Miyakogusa Predicted Gene

Lj0g3v0022169.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0022169.1 Non Chatacterized Hit- tr|D8TL49|D8TL49_VOLCA
Putative uncharacterized protein OS=Volvox carteri
GN=,28.76,2e-17,seg,NULL,CUFF.1231.1
         (327 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G08540.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   362   e-100

>AT5G08540.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast
           thylakoid membrane, chloroplast, chloroplast envelope;
           EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13
           growth stages; Has 30201 Blast hits to 17322 proteins in
           780 species: Archae - 12; Bacteria - 1396; Metazoa -
           17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
           Eukaryotes - 2996 (source: NCBI BLink). |
           chr5:2763914-2765431 FORWARD LENGTH=346
          Length = 346

 Score =  362 bits (928), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 169/239 (70%), Positives = 203/239 (84%), Gaps = 1/239 (0%)

Query: 74  LPWIQEKALDLVEFTGSVTQAIPGPRVGPTSFPWILAVPLAYAGLTFVIAFVKTVRKFTS 133
           +PWIQEKALDLVEFTGSV+QAIPGPRVG +  PW+LAVPLAYAG+TFV AFVKTV+KF+S
Sbjct: 84  MPWIQEKALDLVEFTGSVSQAIPGPRVGSSKLPWMLAVPLAYAGVTFVTAFVKTVQKFSS 143

Query: 134 PKAKRRRLVSKNATLCRSIDDLFQKGRDQVTLDALNEIVNKTGFELEEILRKYIRYTLNE 193
           PKA+R++LV++NA LCRSID+L +K    V    L  +  KT F +EEILRKYIRY LNE
Sbjct: 144 PKAQRKKLVNQNAMLCRSIDELLRKA-GTVHSSELKALEQKTEFNMEEILRKYIRYALNE 202

Query: 194 KPFNPDTVADLIQLRRASMLNDSDVARILNEISLRIVGDKGPVVMDKSGYTEKGFKRKLA 253
           KPFNPD VADLI LR+AS LNDS +  ILNEIS RIV +KGPVVM   G+TEKGFKRKLA
Sbjct: 203 KPFNPDLVADLIHLRKASGLNDSQIPEILNEISRRIVKEKGPVVMKMQGFTEKGFKRKLA 262

Query: 254 VQTLFGKVFYLSELPEFCSRDSSLVVKETFGVTDEDADKLRIHTISDAGNFDALEKMMD 312
           VQ LFGK++YLSELP+FCS+D+SL+VKE FGVTDEDA+KLRIH +++AG+ +ALEKM++
Sbjct: 263 VQALFGKIYYLSELPDFCSKDNSLIVKEIFGVTDEDAEKLRIHALAEAGDIEALEKMVE 321