Miyakogusa Predicted Gene

Lj0g3v0015659.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0015659.1 Non Chatacterized Hit- tr|I1HUU1|I1HUU1_BRADI
Uncharacterized protein OS=Brachypodium distachyon GN=,54.12,4e-19,
,NODE_44741_length_509_cov_240.966599.path1.1
         (133 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G43750.1 | Symbols: NDH18 | NAD(P)H dehydrogenase 18 | chr5:1...   130   2e-31

>AT5G43750.1 | Symbols: NDH18 | NAD(P)H dehydrogenase 18 |
           chr5:17580100-17581145 REVERSE LENGTH=212
          Length = 212

 Score =  130 bits (327), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 65/136 (47%), Positives = 89/136 (65%), Gaps = 8/136 (5%)

Query: 5   SSLSLLPPITSQPKLTSTK-------SFSSPIPPNLHGLLTKTNRFSLKAGFNEIEPDLN 57
           +++++L P  S PK+T +K          + +     G   K  +    AG ++IEPD+N
Sbjct: 2   ATVTILSP-KSIPKVTDSKFGARVSDQIVNVVKCGKSGRRLKLAKLVSAAGLSQIEPDIN 60

Query: 58  EDPRDQFALNSIDSEDFEYGIFDGHHTYYEGEHEKGTFWGSIAEDIAATEPPTGFQGIIS 117
           EDP  QF  NSI+ EDF+YG +DG HTYYEGE +KGTFWG+IA+DIAA +   GFQG+IS
Sbjct: 61  EDPIGQFETNSIEMEDFKYGYYDGAHTYYEGEVQKGTFWGAIADDIAAVDQTNGFQGLIS 120

Query: 118 WLFPPAIAAGVFFDVP 133
            +F PAIA G++FD P
Sbjct: 121 CMFLPAIALGMYFDAP 136