Miyakogusa Predicted Gene

Lj0g3v0014309.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0014309.1 Non Chatacterized Hit- tr|I1L8F1|I1L8F1_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.1278
PE=,86.99,0,SUBFAMILY NOT NAMED,NULL; ATP-BINDING CASSETTE (ABC)
TRANSPORTER-RELATED,NULL; PH domain-like,NULL;
,NODE_46612_length_1390_cov_150.804321.path1.1
         (280 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G03900.1 | Symbols: ATNAP4, NAP4 | non-intrinsic ABC protein ...   314   3e-86
AT3G58600.1 | Symbols:  | Adaptin ear-binding coat-associated pr...   140   1e-33

>AT1G03900.1 | Symbols: ATNAP4, NAP4 | non-intrinsic ABC protein 4 |
           chr1:991252-992852 FORWARD LENGTH=272
          Length = 272

 Score =  314 bits (805), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 180/257 (70%), Positives = 199/257 (77%), Gaps = 16/257 (6%)

Query: 9   SFEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIWTGRIRVVSRRDRCEIRLEDPAS 68
           +FEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIW+GR+RVVS +DRCEIRLED  S
Sbjct: 11  TFEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIWSGRLRVVSCKDRCEIRLEDSNS 70

Query: 69  GDLFAACFVYPGQREGSVEPVLDSSRYFVLKIEDGQGKHAFIGLGFNERNEAFDFNVALS 128
           GDLFAACFV PG+RE SVEP LDSSRYFVL+I+DG+GK+AFIGLGF ERNEAFDFNVALS
Sbjct: 71  GDLFAACFVDPGRRENSVEPSLDSSRYFVLRIDDGRGKYAFIGLGFAERNEAFDFNVALS 130

Query: 129 DHEKYVRREHDKESGNADAAEDSQIDIHPAVNHRLKEGETIRINVKHK-TPGGTGMLSAA 187
           DHEKYVRRE +KE+G   +  D+ IDIHPAVNHRLKEGETIRINVK K T  GTGMLSAA
Sbjct: 131 DHEKYVRREKEKETGET-SESDNHIDIHPAVNHRLKEGETIRINVKPKPTTNGTGMLSAA 189

Query: 188 GLTGGHAATPKPKVLSLAXXXXXXXXXXXXXXXXXNDPVAARIVSTTHGSGPKGTHEGVR 247
            L+G    T KPK L+LA                 NDPVA+RI S        G  E  R
Sbjct: 190 -LSG----TGKPKPLALAPPPKAAGVTRSPLPPPPNDPVASRIAS-------DGCKESRR 237

Query: 248 HSTDALSDLSQLQKNLP 264
           +  + LSDLSQL+KNLP
Sbjct: 238 N--EPLSDLSQLKKNLP 252


>AT3G58600.1 | Symbols:  | Adaptin ear-binding coat-associated
           protein 1 NECAP-1 | chr3:21668746-21670999 REVERSE
           LENGTH=302
          Length = 302

 Score =  140 bits (352), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 76/176 (43%), Positives = 106/176 (60%), Gaps = 10/176 (5%)

Query: 5   EEDESFEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIWTGRIRVVSRRDRCEIRLE 64
           EE E+ E  L  V E  VY IPPR T+  Y+  EW  +   W G ++VVS+ + C I+L 
Sbjct: 27  EEREAIEIALFQVPECYVYLIPPRKTAASYRADEWDVNKWAWEGALKVVSKGEECIIKLV 86

Query: 65  DPASGDLFAACFVYPGQREGSVEPVLDSSRYFVLKIE---DGQGKHAFIGLGFNERNEAF 121
           D  +G+L+A  F+  G+    VE V+DSSRYFVL++E   DG+ +HAFIGLGF ER EA+
Sbjct: 87  DKTTGELYAQAFLREGELH-PVEAVIDSSRYFVLRVEEKIDGRVRHAFIGLGFRERTEAY 145

Query: 122 DFNVALSDHEKYVRREHDKESGNADAAEDSQIDIHPAVNHRLKEGETIRINVKHKT 177
           DF  AL DH KY+ ++   E         S +D      + LKEGETI + +K+++
Sbjct: 146 DFQAALHDHMKYLNKKKTAEEMEQHYQNTSSVD------YSLKEGETIVLQLKNRS 195