Miyakogusa Predicted Gene
- Lj0g3v0006099.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0006099.1 Non Chatacterized Hit- tr|A5B9J7|A5B9J7_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,49.09,2e-16,seg,NULL; ZF_C3H1,Zinc finger, CCCH-type; no
description,NULL; zf-CCCH,Zinc finger, CCCH-type; zinc
,NODE_51858_length_774_cov_72.377258.path1.1
(144 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G25440.1 | Symbols: ZFWD1 | zinc finger WD40 repeat protein 1... 108 1e-24
AT5G51980.1 | Symbols: | Transducin/WD40 repeat-like superfamil... 104 2e-23
AT5G51980.2 | Symbols: | Transducin/WD40 repeat-like superfamil... 104 2e-23
>AT4G25440.1 | Symbols: ZFWD1 | zinc finger WD40 repeat protein 1 |
chr4:13007107-13009381 REVERSE LENGTH=430
Length = 430
Score = 108 bits (270), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 84/150 (56%), Gaps = 22/150 (14%)
Query: 1 MDVDGGSKRVYHRLGG----PGGDARNQKVCFYWQAGKCDRHPCPYLHSEVVPPHSNSNG 56
+D++GG+KRV+ RLGG P D+ NQKVCF+W+AG+C+R+PCPYLH E+ P S
Sbjct: 3 LDMNGGNKRVFQRLGGGSNRPTTDS-NQKVCFHWRAGRCNRYPCPYLHRELPGPGSGPVA 61
Query: 57 TSSKRPHGYADNSSFSGP--RRSQNFSTWXXXXXXXXXXXXXXXXXXXXXXXXXXXKADK 114
SS + AD S F+GP RR FS K +K
Sbjct: 62 ASSNKR--VADESGFAGPSHRRGPGFS-------------GTANNWGRFGGNRTVTKTEK 106
Query: 115 VCNYWAQGSCSYGERCKFLHSWSLGDGFSL 144
+C +W G+C YG++C++LH WS GD FSL
Sbjct: 107 LCKFWVDGNCPYGDKCRYLHCWSKGDSFSL 136
>AT5G51980.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr5:21113650-21115902 REVERSE LENGTH=437
Length = 437
Score = 104 bits (259), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 80/153 (52%), Gaps = 21/153 (13%)
Query: 1 MDVDGGSKRVYHRLGGPGGDAR-------NQKVCFYWQAGKCDRHPCPYLHSEVVPPHSN 53
D++GG+KRV++RLGG GG R QKVCF+W+AG+C+R PCPYLH E+ P
Sbjct: 3 FDLNGGNKRVFNRLGGGGGSTRPMAPTDTRQKVCFHWRAGRCNRSPCPYLHRELPGPGPG 62
Query: 54 SNGTSSKRPHGYADNSSFSGP--RRSQNFSTWXXXXXXXXXXXXXXXXXXXXXXXXXXXK 111
A+ S F+GP RR F+ K
Sbjct: 63 QGQGPGYTNKRVAEESGFAGPSHRRGPGFN------------GNSSSSWGRFGGNRTVTK 110
Query: 112 ADKVCNYWAQGSCSYGERCKFLHSWSLGDGFSL 144
+KVCN+W G+C+YG++C++LH WS G+ F+L
Sbjct: 111 TEKVCNFWVDGNCTYGDKCRYLHCWSKGESFAL 143
>AT5G51980.2 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr5:21113650-21115902 REVERSE LENGTH=443
Length = 443
Score = 104 bits (259), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 80/153 (52%), Gaps = 21/153 (13%)
Query: 1 MDVDGGSKRVYHRLGGPGGDAR-------NQKVCFYWQAGKCDRHPCPYLHSEVVPPHSN 53
D++GG+KRV++RLGG GG R QKVCF+W+AG+C+R PCPYLH E+ P
Sbjct: 3 FDLNGGNKRVFNRLGGGGGSTRPMAPTDTRQKVCFHWRAGRCNRSPCPYLHRELPGPGPG 62
Query: 54 SNGTSSKRPHGYADNSSFSGP--RRSQNFSTWXXXXXXXXXXXXXXXXXXXXXXXXXXXK 111
A+ S F+GP RR F+ K
Sbjct: 63 QGQGPGYTNKRVAEESGFAGPSHRRGPGFN------------GNSSSSWGRFGGNRTVTK 110
Query: 112 ADKVCNYWAQGSCSYGERCKFLHSWSLGDGFSL 144
+KVCN+W G+C+YG++C++LH WS G+ F+L
Sbjct: 111 TEKVCNFWVDGNCTYGDKCRYLHCWSKGESFAL 143