Miyakogusa Predicted Gene

Lj0g3v0002029.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0002029.1 Non Characterized Hit- tr|I1L2W3|I1L2W3_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max
PE=4,92.33,0,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
Med23,Mediator complex, subunit Med23; seg,NULL,CUFF.118.1
         (879 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g031910.1 | mediator of RNA polymerase II transcription su...  1553   0.0  

>Medtr1g031910.1 | mediator of RNA polymerase II transcription subunit
            23 | HC | chr1:11217223-11235651 | 20130731
          Length = 1615

 Score = 1553 bits (4020), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 757/879 (86%), Positives = 797/879 (90%), Gaps = 2/879 (0%)

Query: 1    MVETYTRLLLIAPHSLFRSHFNHLVHKSPSLLSKPGVTLLVLEILNYRLLPLYRYQGKSK 60
            MVETYTRLLLIAPHSLFRSHF HL  KSPSLLS+PGVTLLVLEILNYRLLPLYRYQGKSK
Sbjct: 739  MVETYTRLLLIAPHSLFRSHFIHLGQKSPSLLSRPGVTLLVLEILNYRLLPLYRYQGKSK 798

Query: 61   ALMYDVTKIISALKGKRGDHRVFRLAENLCLNLIFSLRDFFLVRREGKLQGPTEFTETLN 120
            ALMYDVTKIISALKGKRGDHRVFRLAENLCLNLIFSLRDFFLV+REGK  GPTEF+ETLN
Sbjct: 799  ALMYDVTKIISALKGKRGDHRVFRLAENLCLNLIFSLRDFFLVKREGK--GPTEFSETLN 856

Query: 121  RATVITLAILIKTRGIADADHLLYLQNMLEQIMSTSQHTWSEKTQRHFPSVLREALSGRT 180
            R TV+TLAILIKTRGIADADHL YLQNMLEQIM+TS HTWSEKT R+FPSVLREALSGR 
Sbjct: 857  RVTVVTLAILIKTRGIADADHLPYLQNMLEQIMATSVHTWSEKTLRYFPSVLREALSGRP 916

Query: 181  DKRSLAIQAWQQAETTVINQCTQLLSPSADPSYVMTYISHSFPQHRQYLCAGALILMHGH 240
            DKRSLAIQ WQQAE TVI+QC QLLSPSAD +YVMTYI+HSFPQHRQYLCAGALILM GH
Sbjct: 917  DKRSLAIQTWQQAEQTVIHQCNQLLSPSADSNYVMTYINHSFPQHRQYLCAGALILMQGH 976

Query: 241  PENINSGNLGRVLREFSPEEVTSNIYTMVDVMLHHMQIELQQGHSLQDLMIKALASLTFF 300
             ENINSGNLGRVLREFSPEEVTSNIYTMVDVMLHHMQIELQQGH +QDLM+KA++SL FF
Sbjct: 977  AENINSGNLGRVLREFSPEEVTSNIYTMVDVMLHHMQIELQQGHLIQDLMLKAISSLAFF 1036

Query: 301  VWTNEXXXXXXXXXXXXXXXXXXHALRIVISLLDRQELQQRIKLFCLTRGHPEHWLYSGT 360
            VWTNE                  HALRIVISLLDRQELQQR+KLFCLTRGHPEHWLY+G 
Sbjct: 1037 VWTNEILPLDILLLALTDRDDDPHALRIVISLLDRQELQQRVKLFCLTRGHPEHWLYTGM 1096

Query: 361  FKRVEVQKALGNHLSGKDRYPVFFDDIAARLLPVIPLIIYRLIENDAMDTAERLLAVYSP 420
            FKRVE+QKALGNHLS KDR PV+FDDIAARLLP+IPLIIYRLIENDAMDTAERLLA+YSP
Sbjct: 1097 FKRVELQKALGNHLSWKDRQPVYFDDIAARLLPIIPLIIYRLIENDAMDTAERLLALYSP 1156

Query: 421  LLAYYPLRFTFVRDILSYFYGHLPGKLIVRILNVLDISKIPFSESFPQQISSSNPVMCPP 480
            LLAYYPLRFTFVRDIL+YFYGHLPGKLIVRILNVLDISKIPFSESFPQQISS NP MCPP
Sbjct: 1157 LLAYYPLRFTFVRDILAYFYGHLPGKLIVRILNVLDISKIPFSESFPQQISSPNPAMCPP 1216

Query: 481  LDYFSTLLLGIVNNVIPPLHNNSKSGPMGDASNNALRTTQNKPPAVSQSGPANASEGQKA 540
             DYF+TLLLGIVNNVIPPLHNNSKSG +GD+SN A RT+Q+KPPAVSQSGPANASE QKA
Sbjct: 1217 HDYFTTLLLGIVNNVIPPLHNNSKSGSIGDSSNGAQRTSQSKPPAVSQSGPANASESQKA 1276

Query: 541  FYQIQDPGTYTQLVLETAVIEILSLPXXXXXXXXXXXXXXXXXXPTLIQSSNALHGGSNG 600
            FYQIQDPGTYTQLVLETAV+EILSLP                  PTL+QS+++ +G SNG
Sbjct: 1277 FYQIQDPGTYTQLVLETAVVEILSLPVSASQIVQSLVQIVVNIQPTLVQSNDSFNGSSNG 1336

Query: 601  VGQGSVLPTSPSGGSTDSLGASRSTPSVSGINTSNFASRSGYTCQQLSCLLIQACGLLLA 660
            VGQGSVLPTSPSGGSTDS+GASRSTPS SG+NT+NFASRSGYTCQQLSCLLIQACGLLLA
Sbjct: 1337 VGQGSVLPTSPSGGSTDSIGASRSTPSTSGVNTTNFASRSGYTCQQLSCLLIQACGLLLA 1396

Query: 661  QLPSDFHSQLYLETTRIIKENWWLTDGKRSLGEIDSAVGYALLDPTWAAQDNTSTAIGNV 720
            QLPSDFHSQLYLETTRIIKENWWLTD KRSL EIDSAVGYALLDPTWAAQDNTSTAIGNV
Sbjct: 1397 QLPSDFHSQLYLETTRIIKENWWLTDVKRSLAEIDSAVGYALLDPTWAAQDNTSTAIGNV 1456

Query: 721  VALLHSFFSNLPQEWLEGTNVIVNQLRPVASVAMLRIVFRIMGPLLPKLANAHALFNKTL 780
            VALLHSFFSNLPQEWLEGTNVI+ QLRPV SVAMLRI FRIM PLLPKLANAHALFNKTL
Sbjct: 1457 VALLHSFFSNLPQEWLEGTNVIIKQLRPVTSVAMLRIAFRIMSPLLPKLANAHALFNKTL 1516

Query: 781  SSLLSILVDVFGKNSQTSIAVDASEIADLIDFLHHAIHYEGQGGSVQASSKPRADVLALM 840
            S LLS+LVDVFGKNSQTS AVDASEIAD+IDFLHH IHYEGQGG VQASSKPR DVLAL+
Sbjct: 1517 SILLSVLVDVFGKNSQTSTAVDASEIADIIDFLHHVIHYEGQGGPVQASSKPRPDVLALI 1576

Query: 841  GRASERLRPDIQHLLSHLNPDVNSSVYAAFHPKLVQNPS 879
            GRA+E LRPDIQHLLSHLN DVNSSVYAA HPKLV NP+
Sbjct: 1577 GRAAESLRPDIQHLLSHLNTDVNSSVYAASHPKLVPNPT 1615