Miyakogusa Predicted Gene

Lj6g3v1078200.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1078200.1 Non Chatacterized Hit- tr|B9FM15|B9FM15_ORYSJ
Putative uncharacterized protein OS=Oryza sativa
subsp,33.94,0.0000008,RRM,RNA recognition motif domain; seg,NULL; RNA
recognition motif,RNA recognition motif domain; FAMI,CUFF.58970.1
         (329 letters)

Database: trembl 
           41,451,118 sequences; 13,208,986,710 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9FM15_ORYSJ (tr|B9FM15) Putative uncharacterized protein OS=Ory...    58   5e-06

>B9FM15_ORYSJ (tr|B9FM15) Putative uncharacterized protein OS=Oryza sativa subsp.
           japonica GN=OsJ_16815 PE=4 SV=1
          Length = 417

 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 55/109 (50%), Gaps = 1/109 (0%)

Query: 99  IPADSVKKNSQRKTVSRVGQDVKTQGQSFSVYVDGLSDRITLIKLKTIFGKAGRVKDVXX 158
           +P  S +K   RK ++ VG+      +S  ++VD LS  +    LK IF   G V +V  
Sbjct: 109 LPCKSAQKEYTRKCLNFVGK-ASPPPESTVLHVDHLSRNVNEDHLKEIFENYGEVVNVEL 167

Query: 159 XXXXXXXXXXXYGFVRFQNDEEAWRAIRTLNGLRIDGNYLVVKRANPKQ 207
                      YG+V F+N  +A +A+  L+G +IDGN + V+ A P Q
Sbjct: 168 SMDRVVNLPRGYGYVEFKNRADAEKALLYLDGGQIDGNVVKVRFALPPQ 216