Miyakogusa Predicted Gene
- Lj5g3v1889480.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v1889480.2 tr|F6HJC9|F6HJC9_VITVI tRNA pseudouridine
synthase A OS=Vitis vinifera GN=truA PE=3 SV=1,67.51,0,Pseudouridine
synthase,Pseudouridine synthase, catalytic domain; TruA,Pseudouridine
synthase I, TruA,CUFF.56115.2
(427 letters)
Database: trembl
41,451,118 sequences; 13,208,986,710 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
K7N408_SOYBN (tr|K7N408) tRNA pseudouridine synthase OS=Glycine ... 752 0.0
K7LKT0_SOYBN (tr|K7LKT0) tRNA pseudouridine synthase OS=Glycine ... 740 0.0
K7LKT1_SOYBN (tr|K7LKT1) tRNA pseudouridine synthase OS=Glycine ... 734 0.0
K7LKT3_SOYBN (tr|K7LKT3) tRNA pseudouridine synthase OS=Glycine ... 698 0.0
K7LKT4_SOYBN (tr|K7LKT4) tRNA pseudouridine synthase OS=Glycine ... 692 0.0
K7LKT2_SOYBN (tr|K7LKT2) tRNA pseudouridine synthase OS=Glycine ... 687 0.0
K7N409_SOYBN (tr|K7N409) tRNA pseudouridine synthase OS=Glycine ... 639 0.0
F6HJC9_VITVI (tr|F6HJC9) tRNA pseudouridine synthase OS=Vitis vi... 606 e-171
B9SM90_RICCO (tr|B9SM90) tRNA pseudouridine synthase OS=Ricinus ... 570 e-160
K7N410_SOYBN (tr|K7N410) tRNA pseudouridine synthase OS=Glycine ... 557 e-156
K7LKT5_SOYBN (tr|K7LKT5) tRNA pseudouridine synthase OS=Glycine ... 554 e-155
B9GT52_POPTR (tr|B9GT52) tRNA pseudouridine synthase OS=Populus ... 546 e-153
M1D2V3_SOLTU (tr|M1D2V3) tRNA pseudouridine synthase OS=Solanum ... 543 e-152
K4BTK1_SOLLC (tr|K4BTK1) tRNA pseudouridine synthase OS=Solanum ... 539 e-151
K7LKT6_SOYBN (tr|K7LKT6) tRNA pseudouridine synthase OS=Glycine ... 511 e-142
D7KJF1_ARALL (tr|D7KJF1) tRNA pseudouridine synthase OS=Arabidop... 497 e-138
Q9C5K6_ARATH (tr|Q9C5K6) tRNA pseudouridine synthase OS=Arabidop... 496 e-138
M4EGX1_BRARP (tr|M4EGX1) tRNA pseudouridine synthase OS=Brassica... 484 e-134
R0GXN8_9BRAS (tr|R0GXN8) Uncharacterized protein OS=Capsella rub... 460 e-127
B4FYI2_MAIZE (tr|B4FYI2) tRNA pseudouridine synthase OS=Zea mays... 457 e-126
M0S830_MUSAM (tr|M0S830) tRNA pseudouridine synthase OS=Musa acu... 454 e-125
C5WYL0_SORBI (tr|C5WYL0) tRNA pseudouridine synthase OS=Sorghum ... 454 e-125
K4A9H1_SETIT (tr|K4A9H1) tRNA pseudouridine synthase OS=Setaria ... 452 e-124
J3LP99_ORYBR (tr|J3LP99) tRNA pseudouridine synthase OS=Oryza br... 451 e-124
M0W4C2_HORVD (tr|M0W4C2) tRNA pseudouridine synthase OS=Hordeum ... 451 e-124
B7ZX30_MAIZE (tr|B7ZX30) tRNA pseudouridine synthase OS=Zea mays... 449 e-123
Q9FX23_ARATH (tr|Q9FX23) tRNA pseudouridine synthase OS=Arabidop... 448 e-123
M8A7J5_TRIUA (tr|M8A7J5) tRNA pseudouridine synthase 3 OS=Tritic... 437 e-120
I1H501_BRADI (tr|I1H501) tRNA pseudouridine synthase OS=Brachypo... 437 e-120
M8AR27_AEGTA (tr|M8AR27) tRNA pseudouridine synthase 3 OS=Aegilo... 437 e-120
A2XHE2_ORYSI (tr|A2XHE2) tRNA pseudouridine synthase OS=Oryza sa... 399 e-109
B9F8Q5_ORYSJ (tr|B9F8Q5) tRNA pseudouridine synthase OS=Oryza sa... 399 e-108
Q75M65_ORYSJ (tr|Q75M65) tRNA pseudouridine synthase OS=Oryza sa... 382 e-103
D8SR09_SELML (tr|D8SR09) tRNA pseudouridine synthase OS=Selagine... 349 1e-93
M5VKQ3_PRUPE (tr|M5VKQ3) Uncharacterized protein OS=Prunus persi... 340 4e-91
M0W4C7_HORVD (tr|M0W4C7) tRNA pseudouridine synthase OS=Hordeum ... 338 2e-90
M1D2V1_SOLTU (tr|M1D2V1) tRNA pseudouridine synthase OS=Solanum ... 327 6e-87
A9TEF9_PHYPA (tr|A9TEF9) Predicted protein OS=Physcomitrella pat... 325 2e-86
M0W4C6_HORVD (tr|M0W4C6) tRNA pseudouridine synthase OS=Hordeum ... 322 2e-85
B4FJQ8_MAIZE (tr|B4FJQ8) tRNA pseudouridine synthase OS=Zea mays... 321 4e-85
H0YR86_TAEGU (tr|H0YR86) tRNA pseudouridine synthase OS=Taeniopy... 281 4e-73
F1P3X5_CHICK (tr|F1P3X5) tRNA pseudouridine synthase OS=Gallus g... 280 6e-73
R0LIM0_ANAPL (tr|R0LIM0) tRNA pseudouridine synthase 3 (Fragment... 278 3e-72
M0W4C4_HORVD (tr|M0W4C4) tRNA pseudouridine synthase OS=Hordeum ... 276 9e-72
G1MQ86_MELGA (tr|G1MQ86) tRNA pseudouridine synthase OS=Meleagri... 276 2e-71
L9LEM0_TUPCH (tr|L9LEM0) tRNA pseudouridine synthase OS=Tupaia c... 275 3e-71
K3WGL0_PYTUL (tr|K3WGL0) Uncharacterized protein OS=Pythium ulti... 273 7e-71
F1QBS4_DANRE (tr|F1QBS4) tRNA pseudouridine synthase OS=Danio re... 272 2e-70
H3ASP7_LATCH (tr|H3ASP7) tRNA pseudouridine synthase OS=Latimeri... 271 2e-70
Q7ZW97_DANRE (tr|Q7ZW97) tRNA pseudouridine synthase OS=Danio re... 270 7e-70
F1N5P3_BOVIN (tr|F1N5P3) tRNA pseudouridine synthase OS=Bos taur... 270 1e-69
F7GU24_CALJA (tr|F7GU24) tRNA pseudouridine synthase OS=Callithr... 269 1e-69
L8HSN9_BOSMU (tr|L8HSN9) tRNA pseudouridine synthase OS=Bos grun... 269 2e-69
G3HFK1_CRIGR (tr|G3HFK1) tRNA pseudouridine synthase OS=Cricetul... 268 2e-69
G3VEE8_SARHA (tr|G3VEE8) tRNA pseudouridine synthase (Fragment) ... 268 2e-69
M3W3W9_FELCA (tr|M3W3W9) tRNA pseudouridine synthase OS=Felis ca... 268 3e-69
B0BN58_RAT (tr|B0BN58) tRNA pseudouridine synthase OS=Rattus nor... 268 3e-69
G3UUC1_MELGA (tr|G3UUC1) tRNA pseudouridine synthase (Fragment) ... 267 5e-69
K7G5U2_PELSI (tr|K7G5U2) tRNA pseudouridine synthase OS=Pelodisc... 266 8e-69
G7PPM7_MACFA (tr|G7PPM7) tRNA pseudouridine synthase OS=Macaca f... 266 1e-68
G7NCX7_MACMU (tr|G7NCX7) tRNA pseudouridine synthase OS=Macaca m... 266 1e-68
F7AR65_MACMU (tr|F7AR65) tRNA pseudouridine synthase OS=Macaca m... 266 1e-68
H2Q528_PANTR (tr|H2Q528) tRNA pseudouridine synthase OS=Pan trog... 266 1e-68
I3M2V0_SPETR (tr|I3M2V0) tRNA pseudouridine synthase OS=Spermoph... 266 1e-68
F1S759_PIG (tr|F1S759) tRNA pseudouridine synthase OS=Sus scrofa... 265 2e-68
G3RGD8_GORGO (tr|G3RGD8) tRNA pseudouridine synthase OS=Gorilla ... 265 3e-68
H2NFT3_PONAB (tr|H2NFT3) tRNA pseudouridine synthase OS=Pongo ab... 265 3e-68
G1R7A9_NOMLE (tr|G1R7A9) tRNA pseudouridine synthase OS=Nomascus... 264 4e-68
G1Q9U0_MYOLU (tr|G1Q9U0) tRNA pseudouridine synthase OS=Myotis l... 264 4e-68
F7BZ33_HORSE (tr|F7BZ33) tRNA pseudouridine synthase OS=Equus ca... 263 7e-68
G1SLV6_RABIT (tr|G1SLV6) tRNA pseudouridine synthase OS=Oryctola... 263 1e-67
H9G3C7_ANOCA (tr|H9G3C7) tRNA pseudouridine synthase OS=Anolis c... 263 1e-67
M7AXZ5_CHEMY (tr|M7AXZ5) tRNA pseudouridine synthase 3 OS=Chelon... 262 2e-67
I1CE01_RHIO9 (tr|I1CE01) tRNA pseudouridine synthase OS=Rhizopus... 262 2e-67
H0WZH3_OTOGA (tr|H0WZH3) tRNA pseudouridine synthase OS=Otolemur... 262 2e-67
E2RGS6_CANFA (tr|E2RGS6) tRNA pseudouridine synthase OS=Canis fa... 262 2e-67
H0W1G2_CAVPO (tr|H0W1G2) tRNA pseudouridine synthase OS=Cavia po... 261 3e-67
K9ILC1_DESRO (tr|K9ILC1) tRNA pseudouridine synthase OS=Desmodus... 261 3e-67
F1RVF1_PIG (tr|F1RVF1) tRNA pseudouridine synthase OS=Sus scrofa... 261 4e-67
D2HV13_AILME (tr|D2HV13) tRNA pseudouridine synthase (Fragment) ... 260 6e-67
G1KZV9_AILME (tr|G1KZV9) tRNA pseudouridine synthase OS=Ailuropo... 260 6e-67
G3SLW6_LOXAF (tr|G3SLW6) tRNA pseudouridine synthase OS=Loxodont... 260 7e-67
A5PKS2_XENLA (tr|A5PKS2) LOC100101318 protein OS=Xenopus laevis ... 259 1e-66
M3Y5B1_MUSPF (tr|M3Y5B1) tRNA pseudouridine synthase OS=Mustela ... 259 2e-66
G9KJH4_MUSPF (tr|G9KJH4) tRNA pseudouridine synthase (Fragment) ... 259 2e-66
A7SJV8_NEMVE (tr|A7SJV8) tRNA pseudouridine synthase OS=Nematost... 258 3e-66
L5KEL5_PTEAL (tr|L5KEL5) tRNA pseudouridine synthase OS=Pteropus... 257 6e-66
I3KH32_ORENI (tr|I3KH32) tRNA pseudouridine synthase (Fragment) ... 257 7e-66
H2LWW2_ORYLA (tr|H2LWW2) tRNA pseudouridine synthase (Fragment) ... 256 1e-65
Q28GS4_XENTR (tr|Q28GS4) Pseudouridine synthase 3 OS=Xenopus tro... 256 2e-65
H2U851_TAKRU (tr|H2U851) tRNA pseudouridine synthase OS=Takifugu... 256 2e-65
I1PBT8_ORYGL (tr|I1PBT8) tRNA pseudouridine synthase OS=Oryza gl... 255 2e-65
Q6P815_XENTR (tr|Q6P815) Pseudouridylate synthase 3 OS=Xenopus t... 255 2e-65
F6ZXE9_XENTR (tr|F6ZXE9) Uncharacterized protein OS=Xenopus trop... 255 3e-65
E9GYG4_DAPPU (tr|E9GYG4) tRNA pseudouridine synthase OS=Daphnia ... 255 3e-65
K7EAA9_ORNAN (tr|K7EAA9) Uncharacterized protein OS=Ornithorhync... 255 3e-65
B7Q752_IXOSC (tr|B7Q752) tRNA pseudouridine synthase (Fragment) ... 254 4e-65
F6UBX4_MONDO (tr|F6UBX4) tRNA pseudouridine synthase OS=Monodelp... 254 5e-65
F2UFZ2_SALS5 (tr|F2UFZ2) tRNA pseudouridine synthase OS=Salpingo... 253 8e-65
I3KH33_ORENI (tr|I3KH33) tRNA pseudouridine synthase (Fragment) ... 253 8e-65
L7MME1_9ACAR (tr|L7MME1) tRNA pseudouridine synthase (Fragment) ... 253 9e-65
F7GA48_ORNAN (tr|F7GA48) tRNA pseudouridine synthase OS=Ornithor... 253 1e-64
I0YVI2_9CHLO (tr|I0YVI2) tRNA pseudouridine synthase (Fragment) ... 251 5e-64
H3CH66_TETNG (tr|H3CH66) tRNA pseudouridine synthase (Fragment) ... 251 5e-64
B3RZJ4_TRIAD (tr|B3RZJ4) tRNA pseudouridine synthase (Fragment) ... 250 7e-64
C1EGZ5_MICSR (tr|C1EGZ5) tRNA pseudouridine synthase (Fragment) ... 248 3e-63
Q011R7_OSTTA (tr|Q011R7) Exopolyphosphatases and related protein... 248 3e-63
M7P9X1_9ASCO (tr|M7P9X1) Uncharacterized protein OS=Pneumocystis... 248 3e-63
F0WIK8_9STRA (tr|F0WIK8) tRNA pseudouridine synthase OS=Albugo l... 248 5e-63
Q4SEJ2_TETNG (tr|Q4SEJ2) tRNA pseudouridine synthase (Fragment) ... 247 6e-63
L0P949_PNEJ8 (tr|L0P949) tRNA pseudouridine synthase OS=Pneumocy... 247 6e-63
F0ZSG7_DICPU (tr|F0ZSG7) tRNA pseudouridine synthase OS=Dictyost... 247 8e-63
Q9D0F7_MOUSE (tr|Q9D0F7) tRNA pseudouridine synthase OS=Mus musc... 246 1e-62
D8RZ63_SELML (tr|D8RZ63) tRNA pseudouridine synthase (Fragment) ... 246 2e-62
R7VL81_9ANNE (tr|R7VL81) Uncharacterized protein (Fragment) OS=C... 245 2e-62
C5M8F3_CANTT (tr|C5M8F3) tRNA pseudouridine synthase OS=Candida ... 245 2e-62
J9K2I3_ACYPI (tr|J9K2I3) tRNA pseudouridine synthase OS=Acyrthos... 245 3e-62
F4PSG5_DICFS (tr|F4PSG5) tRNA pseudouridylate synthase OS=Dictyo... 245 3e-62
H3CY76_TETNG (tr|H3CY76) tRNA pseudouridine synthase (Fragment) ... 245 3e-62
H2U850_TAKRU (tr|H2U850) tRNA pseudouridine synthase (Fragment) ... 244 4e-62
H2U849_TAKRU (tr|H2U849) tRNA pseudouridine synthase (Fragment) ... 244 6e-62
M1D2U9_SOLTU (tr|M1D2U9) tRNA pseudouridine synthase OS=Solanum ... 244 7e-62
A8I8K9_CHLRE (tr|A8I8K9) tRNA pseudouridine synthase (Fragment) ... 244 7e-62
D2VLE9_NAEGR (tr|D2VLE9) tRNA pseudouridine synthase OS=Naegleri... 243 1e-61
I1CNT1_RHIO9 (tr|I1CNT1) tRNA pseudouridine synthase OS=Rhizopus... 242 2e-61
H3GBW2_PHYRM (tr|H3GBW2) Uncharacterized protein OS=Phytophthora... 242 2e-61
G4ZNB5_PHYSP (tr|G4ZNB5) Putative uncharacterized protein OS=Phy... 242 3e-61
Q4T1T7_TETNG (tr|Q4T1T7) tRNA pseudouridine synthase (Fragment) ... 241 3e-61
E9BWH6_CAPO3 (tr|E9BWH6) tRNA-pseudouridine synthase OS=Capsaspo... 241 3e-61
Q54I97_DICDI (tr|Q54I97) tRNA pseudouridine synthase OS=Dictyost... 241 4e-61
D0MR40_PHYIT (tr|D0MR40) tRNA pseudouridine synthase, putative O... 241 4e-61
G5BB54_HETGA (tr|G5BB54) tRNA pseudouridine synthase OS=Heteroce... 241 5e-61
E6ZHF8_DICLA (tr|E6ZHF8) tRNA pseudouridine synthase OS=Dicentra... 240 8e-61
C4YR49_CANAW (tr|C4YR49) tRNA pseudouridine synthase OS=Candida ... 239 1e-60
A5DGM5_PICGU (tr|A5DGM5) tRNA pseudouridine synthase OS=Meyerozy... 238 3e-60
G0V9E7_NAUCC (tr|G0V9E7) tRNA pseudouridine synthase OS=Naumovoz... 238 3e-60
M3JU58_CANMA (tr|M3JU58) tRNA pseudouridine synthase (Fragment) ... 238 3e-60
Q59N30_CANAL (tr|Q59N30) tRNA pseudouridine synthase OS=Candida ... 237 7e-60
F9X010_MYCGM (tr|F9X010) Uncharacterized protein OS=Mycosphaerel... 236 9e-60
G3NBR7_GASAC (tr|G3NBR7) tRNA pseudouridine synthase (Fragment) ... 236 1e-59
C1MP05_MICPC (tr|C1MP05) tRNA pseudouridine synthase (Fragment) ... 236 2e-59
G6CRU9_DANPL (tr|G6CRU9) Putative pseudouridylate synthase OS=Da... 235 2e-59
G8BHM4_CANPC (tr|G8BHM4) tRNA pseudouridine synthase OS=Candida ... 235 2e-59
F0Y9R3_AURAN (tr|F0Y9R3) tRNA pseudouridine synthase (Fragment) ... 235 2e-59
G8ZR64_TORDC (tr|G8ZR64) tRNA pseudouridine synthase OS=Torulasp... 235 3e-59
N6UJE4_9CUCU (tr|N6UJE4) Uncharacterized protein (Fragment) OS=D... 234 3e-59
J4W3L2_BEAB2 (tr|J4W3L2) Pseudouridine synthase 3 OS=Beauveria b... 234 3e-59
H8X0L9_CANO9 (tr|H8X0L9) tRNA pseudouridine synthase OS=Candida ... 234 3e-59
L8HG78_ACACA (tr|L8HG78) tRNA pseudouridine synthase OS=Acantham... 234 3e-59
N6TMX4_9CUCU (tr|N6TMX4) Uncharacterized protein (Fragment) OS=D... 234 4e-59
D3BUW1_POLPA (tr|D3BUW1) tRNA pseudouridylate synthase OS=Polysp... 234 5e-59
M4B3Y2_HYAAE (tr|M4B3Y2) tRNA pseudouridine synthase OS=Hyaloper... 234 5e-59
A7TJS8_VANPO (tr|A7TJS8) tRNA pseudouridine synthase OS=Vanderwa... 234 5e-59
E7R5R0_PICAD (tr|E7R5R0) tRNA pseudouridine synthase OS=Pichia a... 234 6e-59
Q6CN93_KLULA (tr|Q6CN93) tRNA pseudouridine synthase OS=Kluyvero... 233 9e-59
G8C233_TETPH (tr|G8C233) tRNA pseudouridine synthase OS=Tetrapis... 233 9e-59
B9WH16_CANDC (tr|B9WH16) tRNA pseudouridine synthase OS=Candida ... 233 1e-58
Q17C60_AEDAE (tr|Q17C60) tRNA pseudouridine synthase OS=Aedes ae... 233 1e-58
I1S253_GIBZE (tr|I1S253) Uncharacterized protein OS=Gibberella z... 233 1e-58
H9KIB3_APIME (tr|H9KIB3) tRNA pseudouridine synthase OS=Apis mel... 232 2e-58
A4S2K7_OSTLU (tr|A4S2K7) tRNA pseudouridine synthase (Fragment) ... 232 2e-58
E9E127_METAQ (tr|E9E127) Putative pseudouridine synthase 3 OS=Me... 232 2e-58
N1S346_FUSOX (tr|N1S346) tRNA pseudouridine synthase 3 OS=Fusari... 232 2e-58
J9JC91_9SPIT (tr|J9JC91) tRNA pseudouridine synthase OS=Oxytrich... 232 3e-58
C5DXE3_ZYGRC (tr|C5DXE3) tRNA pseudouridine synthase OS=Zygosacc... 231 3e-58
C0PNV6_MAIZE (tr|C0PNV6) tRNA pseudouridine synthase OS=Zea mays... 230 8e-58
G8YUT8_PICSO (tr|G8YUT8) tRNA pseudouridine synthase OS=Pichia s... 230 8e-58
N4UNN8_FUSOX (tr|N4UNN8) tRNA pseudouridine synthase 3 OS=Fusari... 230 1e-57
C4Y7T4_CLAL4 (tr|C4Y7T4) tRNA pseudouridine synthase OS=Clavispo... 229 2e-57
E7Q3F1_YEASB (tr|E7Q3F1) tRNA pseudouridine synthase OS=Saccharo... 229 2e-57
K3VCC3_FUSPC (tr|K3VCC3) Uncharacterized protein OS=Fusarium pse... 229 2e-57
E7NH83_YEASO (tr|E7NH83) tRNA pseudouridine synthase OS=Saccharo... 229 2e-57
C7GYA6_YEAS2 (tr|C7GYA6) tRNA pseudouridine synthase OS=Saccharo... 229 2e-57
B3LUK8_YEAS1 (tr|B3LUK8) tRNA pseudouridine synthase OS=Saccharo... 229 2e-57
N1P4N2_YEASX (tr|N1P4N2) Deg1p OS=Saccharomyces cerevisiae CEN.P... 228 2e-57
H0GUA6_9SACH (tr|H0GUA6) tRNA pseudouridine synthase OS=Saccharo... 228 2e-57
J4TZ95_SACK1 (tr|J4TZ95) tRNA pseudouridine synthase OS=Saccharo... 228 2e-57
G2WDD9_YEASK (tr|G2WDD9) tRNA pseudouridine synthase OS=Saccharo... 228 3e-57
F2QNK5_PICP7 (tr|F2QNK5) tRNA pseudouridine synthase OS=Komagata... 228 3e-57
A7A238_YEAS7 (tr|A7A238) tRNA pseudouridine synthase OS=Saccharo... 228 3e-57
C4QVR2_PICPG (tr|C4QVR2) tRNA pseudouridine synthase OS=Komagata... 228 3e-57
C7Z0Y2_NECH7 (tr|C7Z0Y2) Predicted protein OS=Nectria haematococ... 228 3e-57
G8JWE4_ERECY (tr|G8JWE4) tRNA pseudouridine synthase OS=Eremothe... 228 3e-57
H0GFN5_9SACH (tr|H0GFN5) tRNA pseudouridine synthase OS=Saccharo... 228 3e-57
E7LU00_YEASV (tr|E7LU00) tRNA pseudouridine synthase OS=Saccharo... 228 3e-57
C8Z7T3_YEAS8 (tr|C8Z7T3) tRNA pseudouridine synthase OS=Saccharo... 228 3e-57
A3LX03_PICST (tr|A3LX03) tRNA pseudouridine synthase OS=Scheffer... 228 3e-57
H1VUT6_COLHI (tr|H1VUT6) tRNA pseudouridine synthase OS=Colletot... 228 4e-57
E9ERL6_METAR (tr|E9ERL6) Putative pseudouridine synthase 3 OS=Me... 228 4e-57
D2A375_TRICA (tr|D2A375) tRNA pseudouridine synthase OS=Triboliu... 228 4e-57
J9NC48_FUSO4 (tr|J9NC48) Uncharacterized protein OS=Fusarium oxy... 228 4e-57
G8YTD4_PICSO (tr|G8YTD4) tRNA pseudouridine synthase OS=Pichia s... 227 7e-57
Q6FKS7_CANGA (tr|Q6FKS7) tRNA pseudouridine synthase OS=Candida ... 227 8e-57
E3WZX2_ANODA (tr|E3WZX2) tRNA pseudouridine synthase OS=Anophele... 226 1e-56
I2H0H2_TETBL (tr|I2H0H2) tRNA pseudouridine synthase OS=Tetrapis... 226 1e-56
F9G8X1_FUSOF (tr|F9G8X1) Uncharacterized protein OS=Fusarium oxy... 226 1e-56
Q7Q242_ANOGA (tr|Q7Q242) tRNA pseudouridine synthase (Fragment) ... 226 1e-56
K0KSL0_WICCF (tr|K0KSL0) tRNA pseudouridine synthase OS=Wickerha... 225 2e-56
H2AQ38_KAZAF (tr|H2AQ38) tRNA pseudouridine synthase OS=Kazachst... 225 2e-56
M2Y7P4_GALSU (tr|M2Y7P4) tRNA pseudouridine synthase OS=Galdieri... 225 3e-56
F8P967_SERL9 (tr|F8P967) tRNA pseudouridine synthase OS=Serpula ... 224 3e-56
G9NWQ3_HYPAI (tr|G9NWQ3) Putative uncharacterized protein OS=Hyp... 224 4e-56
C5DBF6_LACTC (tr|C5DBF6) tRNA pseudouridine synthase OS=Lachance... 224 4e-56
F7VPN4_SORMK (tr|F7VPN4) WGS project CABT00000000 data, contig 2... 224 4e-56
Q750F7_ASHGO (tr|Q750F7) tRNA pseudouridine synthase OS=Ashbya g... 224 5e-56
M9N5B5_ASHGS (tr|M9N5B5) FAGL003Wp OS=Ashbya gossypii FDAG1 GN=F... 224 5e-56
N4W3B1_COLOR (tr|N4W3B1) Pseudouridylate synthase 3 OS=Colletotr... 224 6e-56
Q6BSM4_DEBHA (tr|Q6BSM4) tRNA pseudouridine synthase OS=Debaryom... 224 6e-56
M3D8Q6_9PEZI (tr|M3D8Q6) Pseudouridine synthase OS=Mycosphaerell... 223 9e-56
G3AP53_SPAPN (tr|G3AP53) tRNA pseudouridine synthase OS=Spathasp... 223 9e-56
C5L1W2_PERM5 (tr|C5L1W2) tRNA pseudouridine synthase OS=Perkinsu... 223 1e-55
E3QGP1_COLGM (tr|E3QGP1) tRNA pseudouridine synthase A OS=Collet... 223 1e-55
G0W644_NAUDC (tr|G0W644) tRNA pseudouridine synthase OS=Naumovoz... 222 2e-55
M1VU00_CLAPU (tr|M1VU00) Related to pseudouridine synthase 3 OS=... 222 2e-55
K7ILU7_NASVI (tr|K7ILU7) tRNA pseudouridine synthase OS=Nasonia ... 222 2e-55
G8BS98_TETPH (tr|G8BS98) tRNA pseudouridine synthase OS=Tetrapis... 221 3e-55
K8EJB4_9CHLO (tr|K8EJB4) tRNA pseudouridine synthase OS=Bathycoc... 221 4e-55
E9J363_SOLIN (tr|E9J363) tRNA pseudouridine synthase (Fragment) ... 221 5e-55
E5SDA6_TRISP (tr|E5SDA6) tRNA pseudouridine synthase OS=Trichine... 219 1e-54
G2RHX6_THITE (tr|G2RHX6) Putative uncharacterized protein OS=Thi... 219 1e-54
C1C1W1_9MAXI (tr|C1C1W1) tRNA pseudouridine synthase OS=Caligus ... 219 1e-54
G3JA62_CORMM (tr|G3JA62) Pseudouridylate synthase 3 OS=Cordyceps... 219 1e-54
J7R588_KAZNA (tr|J7R588) tRNA pseudouridine synthase OS=Kazachst... 219 1e-54
B0XGH8_CULQU (tr|B0XGH8) tRNA pseudouridine synthase OS=Culex qu... 219 2e-54
D3PJK9_9MAXI (tr|D3PJK9) tRNA pseudouridine synthase OS=Lepeopht... 219 2e-54
N1PWA4_MYCPJ (tr|N1PWA4) Uncharacterized protein OS=Dothistroma ... 219 2e-54
B4NSM9_DROSI (tr|B4NSM9) tRNA pseudouridine synthase OS=Drosophi... 218 3e-54
K0T8R2_THAOC (tr|K0T8R2) Uncharacterized protein OS=Thalassiosir... 218 3e-54
Q9W282_DROME (tr|Q9W282) tRNA pseudouridine synthase OS=Drosophi... 218 3e-54
B3NND9_DROER (tr|B3NND9) tRNA pseudouridine synthase OS=Drosophi... 218 4e-54
B6K2Z9_SCHJY (tr|B6K2Z9) tRNA pseudouridine synthase OS=Schizosa... 217 6e-54
E2AJH5_CAMFO (tr|E2AJH5) tRNA pseudouridine synthase OS=Camponot... 217 7e-54
F4WM06_ACREC (tr|F4WM06) tRNA pseudouridine synthase OS=Acromyrm... 217 9e-54
A5E2I9_LODEL (tr|A5E2I9) tRNA pseudouridine synthase OS=Lodderom... 216 9e-54
Q22TA6_TETTS (tr|Q22TA6) tRNA pseudouridine synthase OS=Tetrahym... 216 1e-53
H9HAH0_ATTCE (tr|H9HAH0) tRNA pseudouridine synthase OS=Atta cep... 216 1e-53
E2B8R8_HARSA (tr|E2B8R8) tRNA pseudouridine synthase OS=Harpegna... 216 1e-53
R8BW34_9PEZI (tr|R8BW34) Putative pseudouridine synthase 3 prote... 215 2e-53
R4XHC6_9ASCO (tr|R4XHC6) Uncharacterized protein OS=Taphrina def... 215 2e-53
B4LNF7_DROVI (tr|B4LNF7) GJ20484 OS=Drosophila virilis GN=Dvir\G... 215 3e-53
F4P152_BATDJ (tr|F4P152) tRNA pseudouridine synthase (Fragment) ... 215 3e-53
Q8X025_NEUCS (tr|Q8X025) Related to pseudouridine synthase 3 OS=... 214 4e-53
Q7RYJ7_NEUCR (tr|Q7RYJ7) Putative uncharacterized protein OS=Neu... 214 4e-53
L2GEW4_COLGN (tr|L2GEW4) tRNA pseudouridine synthase OS=Colletot... 214 5e-53
B6H2I9_PENCW (tr|B6H2I9) Pc13g14530 protein OS=Penicillium chrys... 214 8e-53
F8QAC7_SERL3 (tr|F8QAC7) tRNA pseudouridine synthase OS=Serpula ... 213 1e-52
B4I810_DROSE (tr|B4I810) tRNA pseudouridine synthase OS=Drosophi... 213 1e-52
B4P7E9_DROYA (tr|B4P7E9) tRNA pseudouridine synthase OS=Drosophi... 213 1e-52
B0D7R0_LACBS (tr|B0D7R0) tRNA pseudouridine synthase OS=Laccaria... 213 2e-52
N9T8Z9_ENTHI (tr|N9T8Z9) tRNA pseudouridine synthase, putative O... 212 2e-52
M7XAZ2_ENTHI (tr|M7XAZ2) tRNA pseudouridine synthase, putative O... 212 2e-52
M3UNY8_ENTHI (tr|M3UNY8) tRNA pseudouridine synthase OS=Entamoeb... 212 2e-52
M2S5P5_ENTHI (tr|M2S5P5) tRNA pseudouridine synthase OS=Entamoeb... 212 2e-52
C4LSK6_ENTHI (tr|C4LSK6) tRNA pseudouridine synthase OS=Entamoeb... 212 2e-52
A2QE34_ASPNC (tr|A2QE34) Catalytic activity: tRNA uridine <=> tR... 212 2e-52
E1GG56_LOALO (tr|E1GG56) tRNA pseudouridine synthase OS=Loa loa ... 212 2e-52
G3BDS2_CANTC (tr|G3BDS2) tRNA pseudouridine synthase OS=Candida ... 212 2e-52
B3MIG8_DROAN (tr|B3MIG8) tRNA pseudouridine synthase OS=Drosophi... 212 2e-52
G9MGE6_HYPVG (tr|G9MGE6) tRNA pseudouridine synthase (Fragment) ... 212 2e-52
A1CL65_ASPCL (tr|A1CL65) Pseudouridylate synthase 3 OS=Aspergill... 212 3e-52
R4G3W9_RHOPR (tr|R4G3W9) Putative pseudouridylate synthase OS=Rh... 212 3e-52
B4KMH4_DROMO (tr|B4KMH4) tRNA pseudouridine synthase OS=Drosophi... 211 3e-52
E3RFX3_PYRTT (tr|E3RFX3) Putative uncharacterized protein OS=Pyr... 211 3e-52
G7DZV4_MIXOS (tr|G7DZV4) Uncharacterized protein OS=Mixia osmund... 211 3e-52
K2GVL3_ENTNP (tr|K2GVL3) tRNA pseudouridine synthase OS=Entamoeb... 211 4e-52
C5FD72_ARTOC (tr|C5FD72) Pseudouridylate synthase 3 OS=Arthroder... 211 4e-52
Q0CQF8_ASPTN (tr|Q0CQF8) Putative uncharacterized protein OS=Asp... 211 4e-52
D3TR57_GLOMM (tr|D3TR57) tRNA pseudouridine synthase OS=Glossina... 211 5e-52
N4X068_COCHE (tr|N4X068) Uncharacterized protein OS=Bipolaris ma... 210 9e-52
M2TIS0_COCHE (tr|M2TIS0) Uncharacterized protein OS=Bipolaris ma... 210 9e-52
A0DFY8_PARTE (tr|A0DFY8) tRNA pseudouridine synthase OS=Parameci... 209 1e-51
Q5B8G0_EMENI (tr|Q5B8G0) Putative uncharacterized protein OS=Eme... 209 1e-51
B8N511_ASPFN (tr|B8N511) Pseudouridylate synthase 3 OS=Aspergill... 209 1e-51
B4MNT4_DROWI (tr|B4MNT4) tRNA pseudouridine synthase OS=Drosophi... 209 1e-51
C8VIE4_EMENI (tr|C8VIE4) Pseudouridylate synthase 3 (AFU_ortholo... 209 2e-51
G3Y0V6_ASPNA (tr|G3Y0V6) Putative uncharacterized protein OS=Asp... 209 2e-51
C4A002_BRAFL (tr|C4A002) tRNA pseudouridine synthase OS=Branchio... 209 2e-51
D5GLN7_TUBMM (tr|D5GLN7) tRNA pseudouridine synthase OS=Tuber me... 209 2e-51
B2B096_PODAN (tr|B2B096) Podospora anserina S mat+ genomic DNA c... 209 2e-51
G0TWW6_TRYVY (tr|G0TWW6) tRNA pseudouridine synthase OS=Trypanos... 208 3e-51
G7XBI3_ASPKW (tr|G7XBI3) Pseudouridylate synthase 3 OS=Aspergill... 208 3e-51
M2ZVN8_9PEZI (tr|M2ZVN8) Uncharacterized protein OS=Pseudocercos... 208 3e-51
B8PDE5_POSPM (tr|B8PDE5) tRNA pseudouridine synthase OS=Postia p... 208 4e-51
Q583N7_TRYB2 (tr|Q583N7) tRNA pseudouridine synthase OS=Trypanos... 207 6e-51
M2T6V0_COCSA (tr|M2T6V0) Uncharacterized protein OS=Bipolaris so... 207 7e-51
B2VYM3_PYRTR (tr|B2VYM3) Pseudouridylate synthase 3 OS=Pyrenopho... 207 8e-51
B0E7N4_ENTDS (tr|B0E7N4) tRNA pseudouridine synthase OS=Entamoeb... 206 1e-50
G0RSI2_HYPJQ (tr|G0RSI2) Putative uncharacterized protein OS=Hyp... 206 1e-50
K9HBV1_AGABB (tr|K9HBV1) Uncharacterized protein OS=Agaricus bis... 206 1e-50
L1JX46_GUITH (tr|L1JX46) tRNA pseudouridine synthase OS=Guillard... 206 2e-50
M2N8Y6_9PEZI (tr|M2N8Y6) Uncharacterized protein OS=Baudoinia co... 205 2e-50
Q2GVZ0_CHAGB (tr|Q2GVZ0) Putative uncharacterized protein OS=Cha... 205 3e-50
M1D2U8_SOLTU (tr|M1D2U8) tRNA pseudouridine synthase OS=Solanum ... 205 3e-50
Q4WYK4_ASPFU (tr|Q4WYK4) Pseudouridylate synthase 3 OS=Neosartor... 205 3e-50
K2NJE1_TRYCR (tr|K2NJE1) tRNA pseudouridine synthase OS=Trypanos... 205 3e-50
C9ZQW8_TRYB9 (tr|C9ZQW8) tRNA pseudouridine synthase OS=Trypanos... 205 3e-50
I2JQH7_DEKBR (tr|I2JQH7) tRNA pseudouridine synthase OS=Dekkera ... 204 4e-50
F0XDE3_GROCL (tr|F0XDE3) Pseudouridylate synthase 3 OS=Grosmanni... 204 4e-50
B4H6X3_DROPE (tr|B4H6X3) tRNA pseudouridine synthase OS=Drosophi... 204 4e-50
K5X011_AGABU (tr|K5X011) Uncharacterized protein OS=Agaricus bis... 204 5e-50
Q28WM9_DROPS (tr|Q28WM9) tRNA pseudouridine synthase OS=Drosophi... 204 5e-50
E5R091_ARTGP (tr|E5R091) tRNA pseudouridine synthase 3 OS=Arthro... 203 8e-50
R0KF86_SETTU (tr|R0KF86) Uncharacterized protein OS=Setosphaeria... 203 1e-49
J0LDT5_AURDE (tr|J0LDT5) tRNA pseudouridine synthase (Fragment) ... 203 1e-49
Q0URV4_PHANO (tr|Q0URV4) tRNA pseudouridine synthase OS=Phaeosph... 203 1e-49
E5ADD9_LEPMJ (tr|E5ADD9) Similar to pseudouridylate synthase 3 O... 203 1e-49
G2QQ17_THIHA (tr|G2QQ17) Uncharacterized protein OS=Thielavia he... 203 1e-49
K9GNI3_PEND2 (tr|K9GNI3) Pseudouridylate synthase 3 OS=Penicilli... 203 1e-49
K9H2W4_PEND1 (tr|K9H2W4) Pseudouridylate synthase 3 OS=Penicilli... 202 2e-49
B0XWG7_ASPFC (tr|B0XWG7) Pseudouridylate synthase 3 OS=Neosartor... 202 2e-49
Q4DZ83_TRYCC (tr|Q4DZ83) tRNA pseudouridine synthase OS=Trypanos... 202 2e-49
B4J8B2_DROGR (tr|B4J8B2) GH21331 OS=Drosophila grimshawi GN=Dgri... 202 2e-49
L8G0K1_GEOD2 (tr|L8G0K1) Uncharacterized protein OS=Geomyces des... 202 2e-49
K4E519_TRYCR (tr|K4E519) Pseudouridine synthase A-like protein, ... 202 2e-49
R1G4R0_9PEZI (tr|R1G4R0) Putative pseudouridylate synthase 3 pro... 202 2e-49
M2QDA2_CERSU (tr|M2QDA2) Uncharacterized protein OS=Ceriporiopsi... 202 2e-49
B8M6L3_TALSN (tr|B8M6L3) Pseudouridylate synthase 3 OS=Talaromyc... 202 3e-49
L7JBI0_MAGOR (tr|L7JBI0) Uncharacterized protein OS=Magnaporthe ... 202 3e-49
L7I7X9_MAGOR (tr|L7I7X9) Uncharacterized protein OS=Magnaporthe ... 202 3e-49
G0RXY9_CHATD (tr|G0RXY9) Pseudouridylate synthase-like protein O... 202 3e-49
G4MKS9_MAGO7 (tr|G4MKS9) tRNA-pseudouridine synthase OS=Magnapor... 202 3e-49
A1D693_NEOFI (tr|A1D693) Pseudouridylate synthase 3 OS=Neosartor... 202 3e-49
A4I5I4_LEIIN (tr|A4I5I4) tRNA pseudouridine synthase OS=Leishman... 201 3e-49
B5VI26_YEAS6 (tr|B5VI26) tRNA pseudouridine synthase OS=Saccharo... 201 3e-49
E9BLQ0_LEIDB (tr|E9BLQ0) tRNA pseudouridine synthase OS=Leishman... 201 4e-49
E7KN02_YEASL (tr|E7KN02) tRNA pseudouridine synthase OS=Saccharo... 201 4e-49
Q4Q7E9_LEIMA (tr|Q4Q7E9) tRNA pseudouridine synthase OS=Leishman... 201 5e-49
G7YVP0_CLOSI (tr|G7YVP0) tRNA pseudouridine synthase (Fragment) ... 201 5e-49
G2XG88_VERDV (tr|G2XG88) tRNA pseudouridine synthase OS=Verticil... 201 7e-49
Q4DVU4_TRYCC (tr|Q4DVU4) tRNA pseudouridine synthase OS=Trypanos... 200 9e-49
G4TDU7_PIRID (tr|G4TDU7) tRNA pseudouridine synthase OS=Piriform... 200 1e-48
R7QCV9_CHOCR (tr|R7QCV9) Stackhouse genomic scaffold, scaffold_2... 200 1e-48
I4YHX5_WALSC (tr|I4YHX5) tRNA pseudouridine synthase OS=Wallemia... 200 1e-48
E9B0S9_LEIMU (tr|E9B0S9) tRNA pseudouridine synthase OS=Leishman... 199 1e-48
J3KBT5_COCIM (tr|J3KBT5) tRNA pseudouridine(38-40) synthase OS=C... 199 1e-48
C4JYQ0_UNCRE (tr|C4JYQ0) Putative uncharacterized protein OS=Unc... 199 1e-48
B6Q3G4_PENMQ (tr|B6Q3G4) Pseudouridylate synthase 3 OS=Penicilli... 199 2e-48
C6HB65_AJECH (tr|C6HB65) Pseudouridylate synthase OS=Ajellomyces... 199 2e-48
F0UDM0_AJEC8 (tr|F0UDM0) Pseudouridylate synthase OS=Ajellomyces... 198 3e-48
F2S455_TRIT1 (tr|F2S455) Pseudouridylate synthase OS=Trichophyto... 198 3e-48
C0NKW9_AJECG (tr|C0NKW9) Pseudouridylate synthase OS=Ajellomyces... 198 4e-48
E9CZG8_COCPS (tr|E9CZG8) Pseudouridylate synthase 3 OS=Coccidioi... 197 4e-48
D4DFE0_TRIVH (tr|D4DFE0) Putative uncharacterized protein OS=Tri... 197 5e-48
C5PA07_COCP7 (tr|C5PA07) Pseudouridylate synthase, putative OS=C... 197 5e-48
A4HIA0_LEIBR (tr|A4HIA0) tRNA pseudouridine synthase OS=Leishman... 197 6e-48
E0VFC8_PEDHC (tr|E0VFC8) tRNA pseudouridine synthase OS=Pediculu... 197 7e-48
Q6C194_YARLI (tr|Q6C194) tRNA pseudouridine synthase OS=Yarrowia... 197 7e-48
J3PCE7_GAGT3 (tr|J3PCE7) Uncharacterized protein OS=Gaeumannomyc... 197 7e-48
M7TQM0_BOTFU (tr|M7TQM0) Putative pseudouridylate synthase 3 pro... 197 9e-48
C0S3U3_PARBP (tr|C0S3U3) Pseudouridylate synthase OS=Paracoccidi... 197 1e-47
C5GA06_AJEDR (tr|C5GA06) Pseudouridylate synthase 3 OS=Ajellomyc... 196 1e-47
G2YPJ1_BOTF4 (tr|G2YPJ1) Similar to pseudouridylate synthase 3 O... 196 1e-47
A7F2S8_SCLS1 (tr|A7F2S8) Putative uncharacterized protein OS=Scl... 196 1e-47
G4USI1_NEUT9 (tr|G4USI1) Pseudouridine synthase OS=Neurospora te... 196 1e-47
F8MQE5_NEUT8 (tr|F8MQE5) Putative uncharacterized protein OS=Neu... 196 1e-47
F2SEA9_TRIRC (tr|F2SEA9) tRNA pseudouridine synthase OS=Trichoph... 196 1e-47
D8M2B0_BLAHO (tr|D8M2B0) tRNA pseudouridine synthase OS=Blastocy... 196 2e-47
A2EY58_TRIVA (tr|A2EY58) tRNA pseudouridine synthase OS=Trichomo... 196 2e-47
C1L5J6_SCHJA (tr|C1L5J6) tRNA pseudouridine synthase OS=Schistos... 196 2e-47
C5JKN5_AJEDS (tr|C5JKN5) Pseudouridylate synthase 3 OS=Ajellomyc... 195 3e-47
F2T9N8_AJEDA (tr|F2T9N8) Pseudouridylate synthase 3 OS=Ajellomyc... 195 3e-47
D8UFA6_VOLCA (tr|D8UFA6) tRNA pseudouridine synthase mitochondri... 195 3e-47
Q55NM5_CRYNB (tr|Q55NM5) Putative uncharacterized protein OS=Cry... 194 4e-47
E4X5C1_OIKDI (tr|E4X5C1) tRNA pseudouridine synthase OS=Oikopleu... 194 7e-47
J9VX59_CRYNH (tr|J9VX59) tRNA pseudouridine synthase OS=Cryptoco... 193 1e-46
K2RHZ5_MACPH (tr|K2RHZ5) Pseudouridine synthase I TruA OS=Macrop... 193 1e-46
K1WBK1_TRIAC (tr|K1WBK1) Pseudouridylate synthase OS=Trichosporo... 193 1e-46
G1XKC7_ARTOA (tr|G1XKC7) Uncharacterized protein OS=Arthrobotrys... 192 2e-46
J4IB69_FIBRA (tr|J4IB69) Uncharacterized protein OS=Fibroporia r... 192 3e-46
A9VC57_MONBE (tr|A9VC57) Predicted protein OS=Monosiga brevicoll... 192 3e-46
J5T0G8_TRIAS (tr|J5T0G8) Pseudouridylate synthase OS=Trichosporo... 191 3e-46
Q5KC13_CRYNJ (tr|Q5KC13) Pseudouridylate synthase, putative OS=C... 191 4e-46
C1GUB7_PARBA (tr|C1GUB7) tRNA pseudouridine synthase OS=Paracocc... 191 5e-46
E6RAG1_CRYGW (tr|E6RAG1) Pseudouridylate synthase, putative OS=C... 191 5e-46
M5G6T2_DACSP (tr|M5G6T2) Pseudouridine synthase OS=Dacryopinax s... 191 5e-46
R9AP63_WALIC (tr|R9AP63) tRNA pseudouridine(38/39) synthase OS=W... 190 1e-45
G0UNP5_TRYCI (tr|G0UNP5) tRNA pseudouridine synthase OS=Trypanos... 189 2e-45
F4RBL7_MELLP (tr|F4RBL7) Putative uncharacterized protein OS=Mel... 188 3e-45
M5E749_MALSM (tr|M5E749) Genomic scaffold, msy_sf_4 OS=Malassezi... 188 3e-45
E4YXS0_OIKDI (tr|E4YXS0) tRNA pseudouridine synthase OS=Oikopleu... 188 3e-45
R7SAE0_TREMS (tr|R7SAE0) Uncharacterized protein OS=Tremella mes... 188 3e-45
H2VSE0_CAEJA (tr|H2VSE0) tRNA pseudouridine synthase OS=Caenorha... 188 4e-45
G4V8J9_SCHMA (tr|G4V8J9) Putative pseudouridylate synthase OS=Sc... 187 5e-45
F1KRG5_ASCSU (tr|F1KRG5) tRNA pseudouridine synthase OS=Ascaris ... 187 6e-45
A8PZK2_MALGO (tr|A8PZK2) Putative uncharacterized protein OS=Mal... 187 7e-45
R7Z3J0_9EURO (tr|R7Z3J0) Uncharacterized protein OS=Coniosporium... 185 3e-44
J9B5A8_WUCBA (tr|J9B5A8) tRNA pseudouridine synthase OS=Wucherer... 185 4e-44
K5WQH7_PHACS (tr|K5WQH7) Uncharacterized protein OS=Phanerochaet... 184 4e-44
R7SST4_DICSQ (tr|R7SST4) tRNA pseudouridine synthase OS=Dichomit... 184 8e-44
G5AXW0_HETGA (tr|G5AXW0) tRNA pseudouridine synthase OS=Heteroce... 183 9e-44
A8NIQ6_COPC7 (tr|A8NIQ6) Pseudouridine synthase OS=Coprinopsis c... 183 1e-43
D8QFH7_SCHCM (tr|D8QFH7) tRNA pseudouridine synthase OS=Schizoph... 182 2e-43
M5VWT2_PRUPE (tr|M5VWT2) Uncharacterized protein (Fragment) OS=P... 182 2e-43
G0MN12_CAEBE (tr|G0MN12) tRNA pseudouridine synthase OS=Caenorha... 182 2e-43
A6R922_AJECN (tr|A6R922) Putative uncharacterized protein OS=Aje... 182 2e-43
G0PLN4_CAEBE (tr|G0PLN4) tRNA pseudouridine synthase OS=Caenorha... 182 2e-43
H3JK05_STRPU (tr|H3JK05) tRNA pseudouridine synthase OS=Strongyl... 180 8e-43
C1G1P3_PARBD (tr|C1G1P3) tRNA pseudouridine synthase OS=Paracocc... 179 1e-42
A8WP84_CAEBR (tr|A8WP84) tRNA pseudouridine synthase OS=Caenorha... 179 1e-42
H2YEI4_CIOSA (tr|H2YEI4) tRNA pseudouridine synthase (Fragment) ... 179 3e-42
D8QFJ6_SCHCM (tr|D8QFJ6) tRNA pseudouridine synthase (Fragment) ... 178 3e-42
M1D2V5_SOLTU (tr|M1D2V5) tRNA pseudouridine synthase OS=Solanum ... 178 3e-42
M1D2V2_SOLTU (tr|M1D2V2) tRNA pseudouridine synthase OS=Solanum ... 177 5e-42
M9M8G8_9BASI (tr|M9M8G8) Pseudouridylate synthase OS=Pseudozyma ... 176 2e-41
B7FYG8_PHATC (tr|B7FYG8) tRNA pseudouridine synthase (Fragment) ... 172 3e-40
R9P127_9BASI (tr|R9P127) tRNA pseudouridine synthase OS=Pseudozy... 169 2e-39
M7XPJ7_RHOTO (tr|M7XPJ7) Pseudouridylate synthase OS=Rhodosporid... 169 2e-39
E3KHT7_PUCGT (tr|E3KHT7) Putative uncharacterized protein OS=Puc... 168 3e-39
Q1ET07_SACBA (tr|Q1ET07) tRNA pseudouridine synthase (Fragment) ... 167 6e-39
Q6DI24_DANRE (tr|Q6DI24) tRNA pseudouridine synthase OS=Danio re... 167 6e-39
E7FCB5_DANRE (tr|E7FCB5) tRNA pseudouridine synthase OS=Danio re... 167 7e-39
E6ZP81_SPORE (tr|E6ZP81) Related to DEG1-pseudouridine synthase ... 166 2e-38
G0SWT4_RHOG2 (tr|G0SWT4) Pseudouridine synthase OS=Rhodotorula g... 166 2e-38
Q1ET03_SACBA (tr|Q1ET03) tRNA pseudouridine synthase (Fragment) ... 163 1e-37
Q5CV63_CRYPI (tr|Q5CV63) tRNA pseudouridine synthase (Fragment) ... 161 6e-37
Q4P5K5_USTMA (tr|Q4P5K5) Putative uncharacterized protein OS=Ust... 159 1e-36
F6R255_CIOIN (tr|F6R255) Uncharacterized protein OS=Ciona intest... 159 3e-36
C6LSZ5_GIAIB (tr|C6LSZ5) Pseudouridylate synthase, putative OS=G... 158 4e-36
A8B4L8_GIAIC (tr|A8B4L8) Pseudouridylate synthase, putative OS=G... 158 5e-36
G5C1S5_HETGA (tr|G5C1S5) Bone morphogenetic protein receptor typ... 157 6e-36
K1WJA4_MARBU (tr|K1WJA4) Pseudouridylate synthase OS=Marssonina ... 156 1e-35
B6AJ38_CRYMR (tr|B6AJ38) tRNA pseudouridine synthase OS=Cryptosp... 156 1e-35
I2FP43_USTH4 (tr|I2FP43) Related to DEG1-pseudouridine synthase ... 155 3e-35
N1J655_ERYGR (tr|N1J655) tRNA pseudouridine synthase 3 OS=Blumer... 154 6e-35
M7T0T5_9PEZI (tr|M7T0T5) Putative pseudouridine synthase 3 prote... 154 9e-35
E1F1Z7_GIAIA (tr|E1F1Z7) Pseudouridylate synthase, putative OS=G... 153 1e-34
M1US23_CYAME (tr|M1US23) tRNA pseudouridine synthase OS=Cyanidio... 153 2e-34
E1ZER2_CHLVA (tr|E1ZER2) Putative uncharacterized protein OS=Chl... 152 2e-34
A8PGC8_BRUMA (tr|A8PGC8) tRNA pseudouridine synthase OS=Brugia m... 150 6e-34
B8C9S1_THAPS (tr|B8C9S1) tRNA pseudouridine synthase (Fragment) ... 149 1e-33
D4B5P6_ARTBC (tr|D4B5P6) tRNA pseudouridine synthase OS=Arthrode... 149 1e-33
H6BPS1_EXODN (tr|H6BPS1) Putative uncharacterized protein OS=Exo... 149 3e-33
B4IQ73_DROSE (tr|B4IQ73) tRNA pseudouridine synthase (Fragment) ... 144 5e-32
B9H7Y7_POPTR (tr|B9H7Y7) tRNA pseudouridine synthase OS=Populus ... 141 6e-31
F0VCS2_NEOCL (tr|F0VCS2) tRNA pseudouridine synthase OS=Neospora... 134 6e-29
I3EM86_NEMP1 (tr|I3EM86) tRNA pseudouridine synthase OS=Nematoci... 134 1e-28
I3EEX1_NEMP3 (tr|I3EEX1) tRNA pseudouridine synthase OS=Nematoci... 134 1e-28
H8ZEQ4_NEMS1 (tr|H8ZEQ4) tRNA pseudouridine synthase OS=Nematoci... 130 9e-28
M1D2V4_SOLTU (tr|M1D2V4) Uncharacterized protein OS=Solanum tube... 129 2e-27
Q4Y919_PLACH (tr|Q4Y919) tRNA pseudouridine synthase (Fragment) ... 126 1e-26
F4C0J9_METCG (tr|F4C0J9) tRNA pseudouridine synthase A OS=Methan... 125 2e-26
Q8I0W4_PLAF7 (tr|Q8I0W4) tRNA pseudouridine synthase OS=Plasmodi... 124 6e-26
B6KUM4_TOXGO (tr|B6KUM4) tRNA pseudouridine synthase OS=Toxoplas... 124 9e-26
Q4YTA0_PLABA (tr|Q4YTA0) tRNA pseudouridine synthase (Fragment) ... 123 1e-25
D1JIP0_9ARCH (tr|D1JIP0) tRNA pseudouridine synthase A OS=uncult... 123 1e-25
Q5CN65_CRYHO (tr|Q5CN65) tRNA pseudouridine synthase OS=Cryptosp... 122 2e-25
Q0DRI5_ORYSJ (tr|Q0DRI5) tRNA pseudouridine synthase OS=Oryza sa... 122 3e-25
L1L9Z2_BABEQ (tr|L1L9Z2) tRNA pseudouridine synthase OS=Babesia ... 121 4e-25
M0W4C3_HORVD (tr|M0W4C3) tRNA pseudouridine synthase OS=Hordeum ... 120 7e-25
M0W4C0_HORVD (tr|M0W4C0) tRNA pseudouridine synthase OS=Hordeum ... 120 1e-24
I7I7R3_BABMI (tr|I7I7R3) tRNA pseudouridine synthase OS=Babesia ... 120 1e-24
E4Z2I9_OIKDI (tr|E4Z2I9) tRNA pseudouridine synthase (Fragment) ... 118 5e-24
E1RHN0_METP4 (tr|E1RHN0) tRNA pseudouridine synthase A OS=Methan... 118 5e-24
A7ANH8_BABBO (tr|A7ANH8) tRNA pseudouridine synthase OS=Babesia ... 115 5e-23
F2KPN0_ARCVS (tr|F2KPN0) tRNA pseudouridine synthase A (Precurso... 114 5e-23
G0QML4_ICHMG (tr|G0QML4) tRNA pseudouridine synthase (Fragment) ... 114 8e-23
Q2VP68_9ARCH (tr|Q2VP68) tRNA pseudouridine synthase A OS=uncult... 114 1e-22
M1JHQ7_ENCCN (tr|M1JHQ7) tRNA pseudouridine synthase OS=Encephal... 113 1e-22
H1YXN6_9EURY (tr|H1YXN6) tRNA pseudouridine synthase A OS=Methan... 113 1e-22
Q8SQS9_ENCCU (tr|Q8SQS9) tRNA pseudouridine synthase OS=Encephal... 113 1e-22
G7WRE0_METH6 (tr|G7WRE0) tRNA pseudouridine synthase A OS=Methan... 113 1e-22
F0LJ40_THEBM (tr|F0LJ40) tRNA pseudouridine synthase A OS=Thermo... 113 2e-22
B3L399_PLAKH (tr|B3L399) tRNA pseudouridine synthase OS=Plasmodi... 113 2e-22
M1Q3R9_METMZ (tr|M1Q3R9) tRNA pseudouridine synthase A OS=Methan... 112 2e-22
G0HN44_THES4 (tr|G0HN44) tRNA pseudouridine synthase A OS=Thermo... 112 4e-22
H9B9P6_EIMTE (tr|H9B9P6) tRNA pseudouridine synthase OS=Eimeria ... 111 6e-22
A8B801_GIAIC (tr|A8B801) tRNA pseudouridine synthase OS=Giardia ... 111 7e-22
F8AHC2_PYRYC (tr|F8AHC2) tRNA pseudouridine synthase A OS=Pyroco... 110 8e-22
L0HGK4_METFS (tr|L0HGK4) tRNA pseudouridine synthase A OS=Methan... 110 1e-21
A7I4S8_METB6 (tr|A7I4S8) tRNA pseudouridine synthase A OS=Methan... 109 2e-21
E1F6F0_GIAIA (tr|E1F6F0) tRNA pseudouridine synthase OS=Giardia ... 108 4e-21
H3ZPS0_THELI (tr|H3ZPS0) tRNA pseudouridine synthase A OS=Thermo... 108 4e-21
I7L197_METBM (tr|I7L197) tRNA pseudouridine synthase A OS=Methan... 108 4e-21
E3GXI5_METFV (tr|E3GXI5) tRNA pseudouridine synthase A OS=Methan... 108 5e-21
E0SA27_ENCIT (tr|E0SA27) tRNA pseudouridine synthase OS=Encephal... 108 5e-21
Q64EQ0_9ARCH (tr|Q64EQ0) tRNA pseudouridine synthase A OS=uncult... 108 6e-21
D9PX77_METTM (tr|D9PX77) tRNA pseudouridine synthase A OS=Methan... 107 9e-21
I6UPW7_ENCHA (tr|I6UPW7) tRNA pseudouridine synthase OS=Encephal... 107 9e-21
I1FJD5_AMPQE (tr|I1FJD5) tRNA pseudouridine synthase OS=Amphimed... 107 1e-20
C5BL62_TERTT (tr|C5BL62) tRNA pseudouridine synthase A OS=Teredi... 107 1e-20
R5FZC7_9ACTN (tr|R5FZC7) tRNA pseudouridine synthase A OS=Eggert... 105 2e-20
L0KUR1_METHD (tr|L0KUR1) tRNA pseudouridine synthase A OS=Methan... 105 3e-20
D5E8Q7_METMS (tr|D5E8Q7) tRNA pseudouridine synthase A OS=Methan... 105 3e-20
L2GLM3_VITCO (tr|L2GLM3) tRNA pseudouridine synthase OS=Vittafor... 105 3e-20
N0BNF8_9EURY (tr|N0BNF8) Pseudouridylate synthase I OS=Archaeogl... 105 3e-20
M5C7T0_9HOMO (tr|M5C7T0) Uncharacterized protein OS=Rhizoctonia ... 105 5e-20
N0AKK3_9BACI (tr|N0AKK3) tRNA pseudouridine synthase A OS=Bacill... 104 6e-20
D7E5Z7_METEZ (tr|D7E5Z7) tRNA pseudouridine synthase A OS=Methan... 104 6e-20
K2R122_METFO (tr|K2R122) tRNA pseudouridine synthase A OS=Methan... 104 8e-20
I6ZWJ3_ENCRO (tr|I6ZWJ3) tRNA pseudouridine synthase OS=Encephal... 103 1e-19
Q0RRP1_FRAAA (tr|Q0RRP1) tRNA pseudouridine synthase A OS=Franki... 103 2e-19
J0RWV5_9EURY (tr|J0RWV5) tRNA pseudouridine synthase A OS=Methan... 102 4e-19
K6U8E9_9EURY (tr|K6U8E9) tRNA pseudouridine synthase A OS=Methan... 101 5e-19
F6D6J0_METSW (tr|F6D6J0) tRNA pseudouridine synthase A OS=Methan... 101 5e-19
H8ZGN8_NEMS1 (tr|H8ZGN8) tRNA pseudouridine synthase (Fragment) ... 101 5e-19
I9A3W8_9ACTO (tr|I9A3W8) tRNA pseudouridine synthase A OS=Franki... 101 6e-19
C6LX49_GIAIB (tr|C6LX49) tRNA pseudouridine synthase OS=Giardia ... 101 6e-19
I6UPI0_9EURY (tr|I6UPI0) tRNA pseudouridine synthase A OS=Pyroco... 101 6e-19
F2NMT9_MARHT (tr|F2NMT9) tRNA pseudouridine synthase A OS=Marini... 100 9e-19
K4MDS8_9EURY (tr|K4MDS8) tRNA pseudouridine synthase A OS=Methan... 100 1e-18
>K7N408_SOYBN (tr|K7N408) tRNA pseudouridine synthase OS=Glycine max PE=3 SV=1
Length = 426
Score = 752 bits (1942), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/425 (84%), Positives = 384/425 (90%), Gaps = 1/425 (0%)
Query: 1 MATQLSDVDHIATLQARVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRK 60
M TQLSD + IATLQAR KELEAENAKLLSQLAD HEMEKKLH+ EK S KGNRK
Sbjct: 1 MTTQLSDTELIATLQARAKELEAENAKLLSQLADCRCHEMEKKLHIPDEKGRESKKGNRK 60
Query: 61 SEEKIEKMTGYNTRFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIR 120
SEEKIEKM GYNTRFMSHHSKRYVALKV YFGKRFYGFASEAQMEPTVESE+FKA K R
Sbjct: 61 SEEKIEKMPGYNTRFMSHHSKRYVALKVTYFGKRFYGFASEAQMEPTVESELFKAFEKTR 120
Query: 121 LLVGDKKESQYSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDY 180
LLVGDKKESQYSRCGRTDKGVSSVGQVIAL+LRSNLKIS N G+SG +++EQHEGEIDY
Sbjct: 121 LLVGDKKESQYSRCGRTDKGVSSVGQVIALFLRSNLKISATNNGNSGVVLDEQHEGEIDY 180
Query: 181 VRVLNRVLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEH 240
V VLNRVLPNDIRI+GWCPAPVDFHARFSCLSREYKYFFWKE LNIPA+E AG KL+GEH
Sbjct: 181 VGVLNRVLPNDIRIMGWCPAPVDFHARFSCLSREYKYFFWKENLNIPAIEVAGNKLVGEH 240
Query: 241 DFRNFCKMDATNVHNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLF 300
DFRNFCKMDA NVHNYRR IT+FEI TDVRY NQLWVIKIRGSAFLWHQVRCMVAVLF
Sbjct: 241 DFRNFCKMDAANVHNYRRCITLFEISSTDVRYNDNQLWVIKIRGSAFLWHQVRCMVAVLF 300
Query: 301 LVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAGEALRIH 360
+VGKGLESPNVIDMLLDT++ RKPQY M+SEVPLVLQSCEF++IKFMCSSDAGEALR+H
Sbjct: 301 MVGKGLESPNVIDMLLDTSRILRKPQYTMASEVPLVLQSCEFDNIKFMCSSDAGEALRVH 360
Query: 361 LVNECQTFQLQAAVFHEALLNCVPLLHDQSLPPSRGTTKKKASYVPLMSRPTEPSYEERR 420
LVNECQ +QLQAA+FHEALLNCVPL +DQSL P +G +KKK S+VPLMSRPTEPSYEERR
Sbjct: 361 LVNECQIYQLQAAIFHEALLNCVPLSNDQSLLPFQG-SKKKVSHVPLMSRPTEPSYEERR 419
Query: 421 AKLNS 425
AKLN+
Sbjct: 420 AKLNT 424
>K7LKT0_SOYBN (tr|K7LKT0) tRNA pseudouridine synthase OS=Glycine max PE=3 SV=1
Length = 426
Score = 740 bits (1911), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/425 (82%), Positives = 382/425 (89%), Gaps = 1/425 (0%)
Query: 1 MATQLSDVDHIATLQARVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRK 60
MATQLSD + I +LQARVKELE ENAKLLSQLAD HEMEKK++V E+ S KGNRK
Sbjct: 1 MATQLSDAELITSLQARVKELETENAKLLSQLADCRSHEMEKKVYVPDERGGKSKKGNRK 60
Query: 61 SEEKIEKMTGYNTRFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIR 120
SEEKIEKM GYNTRFMSHHS+RYVALKVMYFGKRFYGFASEAQMEPTVESE+FKA K R
Sbjct: 61 SEEKIEKMPGYNTRFMSHHSRRYVALKVMYFGKRFYGFASEAQMEPTVESELFKAFEKTR 120
Query: 121 LLVGDKKESQYSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDY 180
LLVG+KKESQYSRCGRTDKGVSSVGQVIAL+LRSNLKIS N G+SG +++EQHEGEIDY
Sbjct: 121 LLVGNKKESQYSRCGRTDKGVSSVGQVIALFLRSNLKISETNNGNSGVVLDEQHEGEIDY 180
Query: 181 VRVLNRVLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEH 240
VRVLNRVLPNDIRI+GWCPAPVDFHARFSCLSREYKYFFWKE LNI AMESAG KL+GEH
Sbjct: 181 VRVLNRVLPNDIRIMGWCPAPVDFHARFSCLSREYKYFFWKENLNIQAMESAGNKLVGEH 240
Query: 241 DFRNFCKMDATNVHNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLF 300
DFRNFCKMDA NVHNYRR I +FEI PTDVRY NQLWVIKIRGSAFLWHQVRCMV VLF
Sbjct: 241 DFRNFCKMDAANVHNYRRRIKLFEISPTDVRYNDNQLWVIKIRGSAFLWHQVRCMVVVLF 300
Query: 301 LVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAGEALRIH 360
+VGKGLESPNVIDMLLDT + RKPQY M+SEVPLVLQSCEF++IKFMCSS+AGEAL +H
Sbjct: 301 MVGKGLESPNVIDMLLDTARILRKPQYTMASEVPLVLQSCEFDNIKFMCSSEAGEALHVH 360
Query: 361 LVNECQTFQLQAAVFHEALLNCVPLLHDQSLPPSRGTTKKKASYVPLMSRPTEPSYEERR 420
LVNECQ +QLQAA+FHEALLNCVPL +DQSL +G +KKK S+VPLMSRPTEPSYEERR
Sbjct: 361 LVNECQIYQLQAAIFHEALLNCVPLSNDQSLLHFQG-SKKKVSHVPLMSRPTEPSYEERR 419
Query: 421 AKLNS 425
AKLN+
Sbjct: 420 AKLNT 424
>K7LKT1_SOYBN (tr|K7LKT1) tRNA pseudouridine synthase OS=Glycine max PE=3 SV=1
Length = 425
Score = 734 bits (1895), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/425 (82%), Positives = 381/425 (89%), Gaps = 2/425 (0%)
Query: 1 MATQLSDVDHIATLQARVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRK 60
MATQLSD + I +LQARVKELE ENAKLLSQLAD HEMEKK++V E+ S KGNRK
Sbjct: 1 MATQLSDAELITSLQARVKELETENAKLLSQLADCRSHEMEKKVYVPDERGGKSKKGNRK 60
Query: 61 SEEKIEKMTGYNTRFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIR 120
SEEKIEKM GYNTRFMSHHS+RYVALKVMYFGKRFYGFASEAQMEPTVESE+FKA K R
Sbjct: 61 SEEKIEKMPGYNTRFMSHHSRRYVALKVMYFGKRFYGFASEAQMEPTVESELFKAFEKTR 120
Query: 121 LLVGDKKESQYSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDY 180
LLVG+KKESQYSRCGRTDKGVSSVGQVIAL+LRSNLKIS N G+SG +++EQH GEIDY
Sbjct: 121 LLVGNKKESQYSRCGRTDKGVSSVGQVIALFLRSNLKISETNNGNSGVVLDEQH-GEIDY 179
Query: 181 VRVLNRVLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEH 240
VRVLNRVLPNDIRI+GWCPAPVDFHARFSCLSREYKYFFWKE LNI AMESAG KL+GEH
Sbjct: 180 VRVLNRVLPNDIRIMGWCPAPVDFHARFSCLSREYKYFFWKENLNIQAMESAGNKLVGEH 239
Query: 241 DFRNFCKMDATNVHNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLF 300
DFRNFCKMDA NVHNYRR I +FEI PTDVRY NQLWVIKIRGSAFLWHQVRCMV VLF
Sbjct: 240 DFRNFCKMDAANVHNYRRRIKLFEISPTDVRYNDNQLWVIKIRGSAFLWHQVRCMVVVLF 299
Query: 301 LVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAGEALRIH 360
+VGKGLESPNVIDMLLDT + RKPQY M+SEVPLVLQSCEF++IKFMCSS+AGEAL +H
Sbjct: 300 MVGKGLESPNVIDMLLDTARILRKPQYTMASEVPLVLQSCEFDNIKFMCSSEAGEALHVH 359
Query: 361 LVNECQTFQLQAAVFHEALLNCVPLLHDQSLPPSRGTTKKKASYVPLMSRPTEPSYEERR 420
LVNECQ +QLQAA+FHEALLNCVPL +DQSL +G +KKK S+VPLMSRPTEPSYEERR
Sbjct: 360 LVNECQIYQLQAAIFHEALLNCVPLSNDQSLLHFQG-SKKKVSHVPLMSRPTEPSYEERR 418
Query: 421 AKLNS 425
AKLN+
Sbjct: 419 AKLNT 423
>K7LKT3_SOYBN (tr|K7LKT3) tRNA pseudouridine synthase OS=Glycine max PE=3 SV=1
Length = 406
Score = 698 bits (1802), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/425 (79%), Positives = 366/425 (86%), Gaps = 21/425 (4%)
Query: 1 MATQLSDVDHIATLQARVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRK 60
MATQLSD + I +LQARVK MEKK++V E+ S KGNRK
Sbjct: 1 MATQLSDAELITSLQARVK--------------------MEKKVYVPDERGGKSKKGNRK 40
Query: 61 SEEKIEKMTGYNTRFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIR 120
SEEKIEKM GYNTRFMSHHS+RYVALKVMYFGKRFYGFASEAQMEPTVESE+FKA K R
Sbjct: 41 SEEKIEKMPGYNTRFMSHHSRRYVALKVMYFGKRFYGFASEAQMEPTVESELFKAFEKTR 100
Query: 121 LLVGDKKESQYSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDY 180
LLVG+KKESQYSRCGRTDKGVSSVGQVIAL+LRSNLKIS N G+SG +++EQHEGEIDY
Sbjct: 101 LLVGNKKESQYSRCGRTDKGVSSVGQVIALFLRSNLKISETNNGNSGVVLDEQHEGEIDY 160
Query: 181 VRVLNRVLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEH 240
VRVLNRVLPNDIRI+GWCPAPVDFHARFSCLSREYKYFFWKE LNI AMESAG KL+GEH
Sbjct: 161 VRVLNRVLPNDIRIMGWCPAPVDFHARFSCLSREYKYFFWKENLNIQAMESAGNKLVGEH 220
Query: 241 DFRNFCKMDATNVHNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLF 300
DFRNFCKMDA NVHNYRR I +FEI PTDVRY NQLWVIKIRGSAFLWHQVRCMV VLF
Sbjct: 221 DFRNFCKMDAANVHNYRRRIKLFEISPTDVRYNDNQLWVIKIRGSAFLWHQVRCMVVVLF 280
Query: 301 LVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAGEALRIH 360
+VGKGLESPNVIDMLLDT + RKPQY M+SEVPLVLQSCEF++IKFMCSS+AGEAL +H
Sbjct: 281 MVGKGLESPNVIDMLLDTARILRKPQYTMASEVPLVLQSCEFDNIKFMCSSEAGEALHVH 340
Query: 361 LVNECQTFQLQAAVFHEALLNCVPLLHDQSLPPSRGTTKKKASYVPLMSRPTEPSYEERR 420
LVNECQ +QLQAA+FHEALLNCVPL +DQSL +G +KKK S+VPLMSRPTEPSYEERR
Sbjct: 341 LVNECQIYQLQAAIFHEALLNCVPLSNDQSLLHFQG-SKKKVSHVPLMSRPTEPSYEERR 399
Query: 421 AKLNS 425
AKLN+
Sbjct: 400 AKLNT 404
>K7LKT4_SOYBN (tr|K7LKT4) tRNA pseudouridine synthase OS=Glycine max PE=3 SV=1
Length = 405
Score = 692 bits (1785), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/425 (78%), Positives = 365/425 (85%), Gaps = 22/425 (5%)
Query: 1 MATQLSDVDHIATLQARVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRK 60
MATQLSD + I +LQARVK MEKK++V E+ S KGNRK
Sbjct: 1 MATQLSDAELITSLQARVK--------------------MEKKVYVPDERGGKSKKGNRK 40
Query: 61 SEEKIEKMTGYNTRFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIR 120
SEEKIEKM GYNTRFMSHHS+RYVALKVMYFGKRFYGFASEAQMEPTVESE+FKA K R
Sbjct: 41 SEEKIEKMPGYNTRFMSHHSRRYVALKVMYFGKRFYGFASEAQMEPTVESELFKAFEKTR 100
Query: 121 LLVGDKKESQYSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDY 180
LLVG+KKESQYSRCGRTDKGVSSVGQVIAL+LRSNLKIS N G+SG +++EQH GEIDY
Sbjct: 101 LLVGNKKESQYSRCGRTDKGVSSVGQVIALFLRSNLKISETNNGNSGVVLDEQH-GEIDY 159
Query: 181 VRVLNRVLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEH 240
VRVLNRVLPNDIRI+GWCPAPVDFHARFSCLSREYKYFFWKE LNI AMESAG KL+GEH
Sbjct: 160 VRVLNRVLPNDIRIMGWCPAPVDFHARFSCLSREYKYFFWKENLNIQAMESAGNKLVGEH 219
Query: 241 DFRNFCKMDATNVHNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLF 300
DFRNFCKMDA NVHNYRR I +FEI PTDVRY NQLWVIKIRGSAFLWHQVRCMV VLF
Sbjct: 220 DFRNFCKMDAANVHNYRRRIKLFEISPTDVRYNDNQLWVIKIRGSAFLWHQVRCMVVVLF 279
Query: 301 LVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAGEALRIH 360
+VGKGLESPNVIDMLLDT + RKPQY M+SEVPLVLQSCEF++IKFMCSS+AGEAL +H
Sbjct: 280 MVGKGLESPNVIDMLLDTARILRKPQYTMASEVPLVLQSCEFDNIKFMCSSEAGEALHVH 339
Query: 361 LVNECQTFQLQAAVFHEALLNCVPLLHDQSLPPSRGTTKKKASYVPLMSRPTEPSYEERR 420
LVNECQ +QLQAA+FHEALLNCVPL +DQSL +G +KKK S+VPLMSRPTEPSYEERR
Sbjct: 340 LVNECQIYQLQAAIFHEALLNCVPLSNDQSLLHFQG-SKKKVSHVPLMSRPTEPSYEERR 398
Query: 421 AKLNS 425
AKLN+
Sbjct: 399 AKLNT 403
>K7LKT2_SOYBN (tr|K7LKT2) tRNA pseudouridine synthase OS=Glycine max PE=3 SV=1
Length = 415
Score = 687 bits (1774), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/416 (79%), Positives = 358/416 (86%), Gaps = 10/416 (2%)
Query: 1 MATQLSDVDHIATLQARVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRK 60
MATQLSD + I +LQARVKELE ENAKLLSQLAD HEMEKK++V E+ S KGNRK
Sbjct: 1 MATQLSDAELITSLQARVKELETENAKLLSQLADCRSHEMEKKVYVPDERGGKSKKGNRK 60
Query: 61 SEEKIEKMTGYNTRFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIR 120
SEEKIEKM GYNTRFMSHHS+RYVALKVMYFGKRFYGFASEAQMEPTVESE+FKA K R
Sbjct: 61 SEEKIEKMPGYNTRFMSHHSRRYVALKVMYFGKRFYGFASEAQMEPTVESELFKAFEKTR 120
Query: 121 LLVGDKKESQYSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDY 180
LLVG+KKESQYSRCGRTDKGVSSVGQVIAL+LRSNLKIS N G+SG +++EQHEGEIDY
Sbjct: 121 LLVGNKKESQYSRCGRTDKGVSSVGQVIALFLRSNLKISETNNGNSGVVLDEQHEGEIDY 180
Query: 181 VRVLNRVLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEH 240
VRVLNRVLPNDIRI+GWCPAPVDFHARFSCLSREYKYFFWKE LNI AMESAG KL+GEH
Sbjct: 181 VRVLNRVLPNDIRIMGWCPAPVDFHARFSCLSREYKYFFWKENLNIQAMESAGNKLVGEH 240
Query: 241 DFRNFCKMDATNVHNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLF 300
DFRNFCKMDA NVHNYRR I +FEI PTDVRY NQLWVIKIRGSAFLWHQVRCMV VLF
Sbjct: 241 DFRNFCKMDAANVHNYRRRIKLFEISPTDVRYNDNQLWVIKIRGSAFLWHQVRCMVVVLF 300
Query: 301 LVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAGEALRIH 360
+VGKGLESPNVIDMLLDT + RKPQY M+SEVPLVLQSCEF++IKFMCSS+AGEAL +H
Sbjct: 301 MVGKGLESPNVIDMLLDTARILRKPQYTMASEVPLVLQSCEFDNIKFMCSSEAGEALHVH 360
Query: 361 LVNECQTFQLQAAVFHEALLNCVPLLHDQSLPPSRGTTKKKASYVPLMSRPTEPSY 416
LVNECQ +QLQAA+FHEALLNCVPL S G AS + SR E S+
Sbjct: 361 LVNECQIYQLQAAIFHEALLNCVPL--------SNGVA--NASKLAAFSRIQEESF 406
>K7N409_SOYBN (tr|K7N409) tRNA pseudouridine synthase OS=Glycine max PE=3 SV=1
Length = 351
Score = 639 bits (1647), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 299/350 (85%), Positives = 323/350 (92%), Gaps = 1/350 (0%)
Query: 76 MSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLVGDKKESQYSRCG 135
MSHHSKRYVALKV YFGKRFYGFASEAQMEPTVESE+FKA K RLLVGDKKESQYSRCG
Sbjct: 1 MSHHSKRYVALKVTYFGKRFYGFASEAQMEPTVESELFKAFEKTRLLVGDKKESQYSRCG 60
Query: 136 RTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDYVRVLNRVLPNDIRIL 195
RTDKGVSSVGQVIAL+LRSNLKIS N G+SG +++EQHEGEIDYV VLNRVLPNDIRI+
Sbjct: 61 RTDKGVSSVGQVIALFLRSNLKISATNNGNSGVVLDEQHEGEIDYVGVLNRVLPNDIRIM 120
Query: 196 GWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMDATNVHN 255
GWCPAPVDFHARFSCLSREYKYFFWKE LNIPA+E AG KL+GEHDFRNFCKMDA NVHN
Sbjct: 121 GWCPAPVDFHARFSCLSREYKYFFWKENLNIPAIEVAGNKLVGEHDFRNFCKMDAANVHN 180
Query: 256 YRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLESPNVIDML 315
YRR IT+FEI TDVRY NQLWVIKIRGSAFLWHQVRCMVAVLF+VGKGLESPNVIDML
Sbjct: 181 YRRCITLFEISSTDVRYNDNQLWVIKIRGSAFLWHQVRCMVAVLFMVGKGLESPNVIDML 240
Query: 316 LDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAGEALRIHLVNECQTFQLQAAVF 375
LDT++ RKPQY M+SEVPLVLQSCEF++IKFMCSSDAGEALR+HLVNECQ +QLQAA+F
Sbjct: 241 LDTSRILRKPQYTMASEVPLVLQSCEFDNIKFMCSSDAGEALRVHLVNECQIYQLQAAIF 300
Query: 376 HEALLNCVPLLHDQSLPPSRGTTKKKASYVPLMSRPTEPSYEERRAKLNS 425
HEALLNCVPL +DQSL P +G +KKK S+VPLMSRPTEPSYEERRAKLN+
Sbjct: 301 HEALLNCVPLSNDQSLLPFQG-SKKKVSHVPLMSRPTEPSYEERRAKLNT 349
>F6HJC9_VITVI (tr|F6HJC9) tRNA pseudouridine synthase OS=Vitis vinifera
GN=VIT_18s0001g01990 PE=3 SV=1
Length = 449
Score = 606 bits (1562), Expect = e-171, Method: Compositional matrix adjust.
Identities = 297/434 (68%), Positives = 353/434 (81%), Gaps = 14/434 (3%)
Query: 8 VDHIATLQA-------RVKELEAENAKLLSQLADSHIHEMEKKLH-VSGEKNTGSIK--G 57
+D I+TLQ+ RV+ELEAENAKL SQ++ H H++ +KL +S + + +K G
Sbjct: 16 LDLISTLQSQLLSLRNRVQELEAENAKLSSQISSCHCHKIREKLDSISLVQQSDELKPGG 75
Query: 58 NRKSEEKIE-KMTGYNTRFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKAL 116
+ ++K++ K+ G N R M+H SKRYVALKVMYFG RFYGFASEA M+PTVESEIFKAL
Sbjct: 76 DETRKKKLKGKIPGTNMRTMNHISKRYVALKVMYFGPRFYGFASEAHMDPTVESEIFKAL 135
Query: 117 AKIRLLVGDKKESQYSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIV-EEQHE 175
K L VGDKKE QYSRCGRTDKGVSSVGQVIAL+LRSNLK GA +S E+V EEQ+E
Sbjct: 136 EKTWLAVGDKKELQYSRCGRTDKGVSSVGQVIALFLRSNLKEIGAREENSKEVVPEEQYE 195
Query: 176 GEIDYVRVLNRVLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIK 235
GEIDY+RVLNRVLP DIR++GWCP P+ FHARFSCLSREYKYFFW+ LNI AMESAG K
Sbjct: 196 GEIDYMRVLNRVLPKDIRVMGWCPVPIGFHARFSCLSREYKYFFWRGNLNILAMESAGKK 255
Query: 236 LIGEHDFRNFCKMDATNVHNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCM 295
+GEHDFRNFCKMDA NVHNYRRHI FEI PT+ RY GNQLW IKI+GSAFLWHQVRCM
Sbjct: 256 FVGEHDFRNFCKMDAVNVHNYRRHIISFEIAPTNNRYDGNQLWAIKIKGSAFLWHQVRCM 315
Query: 296 VAVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAGE 355
VAVLF++G+GLESP+V+D LLDT +T RKPQY M+ E+PLVL+SCEFE +KF+CSSDAG+
Sbjct: 316 VAVLFMIGQGLESPDVVDALLDTERTSRKPQYAMAPEIPLVLESCEFEGLKFICSSDAGQ 375
Query: 356 ALRIHLVNECQTFQLQAAVFHEALLNCVPLLHDQSLPPS--RGTTKKKASYVPLMSRPTE 413
ALR+HL NEC+T+QLQAA+FHEALL+C+P + S GT KK+A+++ LMSRPTE
Sbjct: 376 ALRMHLENECRTYQLQAAIFHEALLSCLPSANSAEKQNSLNNGTIKKEAAHIDLMSRPTE 435
Query: 414 PSYEERRAKLNSST 427
PSYEERRAK NSST
Sbjct: 436 PSYEERRAKFNSST 449
>B9SM90_RICCO (tr|B9SM90) tRNA pseudouridine synthase OS=Ricinus communis
GN=RCOM_0297060 PE=3 SV=1
Length = 438
Score = 570 bits (1468), Expect = e-160, Method: Compositional matrix adjust.
Identities = 278/406 (68%), Positives = 331/406 (81%), Gaps = 8/406 (1%)
Query: 10 HIATLQARVKELEAENAKLLSQLADSHIHEMEKKLHVS-GEKNTGSIKGNRKSEEKIEKM 68
IA+L+++VKELEAENAKL S LA+ ++ E+KL+VS GE N +IK ++ IEK
Sbjct: 34 QIASLKSKVKELEAENAKLSSTLANCRCNQAEEKLNVSTGEHNIKNIK-----KKTIEKN 88
Query: 69 TGYNTRFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLVGDKKE 128
+G+ T M+HH KRYVALKVMYFG+RFYGF+SE QM+PTVESEIFKAL + RLL+GDKKE
Sbjct: 89 SGHATTIMNHHLKRYVALKVMYFGQRFYGFSSEGQMDPTVESEIFKALERTRLLIGDKKE 148
Query: 129 SQYSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQH-EGEIDYVRVLNRV 187
QYSRCGRTDKGVS+VGQVIAL LRS +K GE ++H EGEIDYVRVLNRV
Sbjct: 149 IQYSRCGRTDKGVSAVGQVIALLLRSKVKDIDEIGKVFGETASQKHSEGEIDYVRVLNRV 208
Query: 188 LPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCK 247
LPNDIRI+GWCP P DF ARFSCLSREYKYFF + LN+ AMESAG K IGEHDFRNFCK
Sbjct: 209 LPNDIRIIGWCPVPNDFSARFSCLSREYKYFFRGDNLNLLAMESAGKKFIGEHDFRNFCK 268
Query: 248 MDATNVHNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLE 307
MDA NVHNYRR+IT FEI P RY GNQL+ IKIRGSAFLWHQVRCMVAVLF++G+GLE
Sbjct: 269 MDAMNVHNYRRNITSFEISPCHERYEGNQLFAIKIRGSAFLWHQVRCMVAVLFMIGQGLE 328
Query: 308 SPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAGEALRIHLVNECQT 367
SP+VID+LLDT +TPRKPQY M+ E+PLVL SC+FE ++F CS+DAG+ALR HL NEC+
Sbjct: 329 SPDVIDVLLDTVRTPRKPQYPMAPEIPLVLHSCDFEGLQFTCSTDAGKALRTHLENECRL 388
Query: 368 FQLQAAVFHEALLNCVPLLHDQSLPPSRGTTKKKASYVPLMSRPTE 413
+QLQAA+FHEA+ +C+PL + +SL + GT +KKAS+VPLM RPTE
Sbjct: 389 YQLQAAIFHEAIFSCLPLSNGRSL-SNNGTCEKKASHVPLMLRPTE 433
>K7N410_SOYBN (tr|K7N410) tRNA pseudouridine synthase OS=Glycine max PE=3 SV=1
Length = 320
Score = 557 bits (1435), Expect = e-156, Method: Compositional matrix adjust.
Identities = 265/311 (85%), Positives = 279/311 (89%)
Query: 1 MATQLSDVDHIATLQARVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRK 60
M TQLSD + IATLQAR KELEAENAKLLSQLAD HEMEKKLH+ EK S KGNRK
Sbjct: 1 MTTQLSDTELIATLQARAKELEAENAKLLSQLADCRCHEMEKKLHIPDEKGRESKKGNRK 60
Query: 61 SEEKIEKMTGYNTRFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIR 120
SEEKIEKM GYNTRFMSHHSKRYVALKV YFGKRFYGFASEAQMEPTVESE+FKA K R
Sbjct: 61 SEEKIEKMPGYNTRFMSHHSKRYVALKVTYFGKRFYGFASEAQMEPTVESELFKAFEKTR 120
Query: 121 LLVGDKKESQYSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDY 180
LLVGDKKESQYSRCGRTDKGVSSVGQVIAL+LRSNLKIS N G+SG +++EQHEGEIDY
Sbjct: 121 LLVGDKKESQYSRCGRTDKGVSSVGQVIALFLRSNLKISATNNGNSGVVLDEQHEGEIDY 180
Query: 181 VRVLNRVLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEH 240
V VLNRVLPNDIRI+GWCPAPVDFHARFSCLSREYKYFFWKE LNIPA+E AG KL+GEH
Sbjct: 181 VGVLNRVLPNDIRIMGWCPAPVDFHARFSCLSREYKYFFWKENLNIPAIEVAGNKLVGEH 240
Query: 241 DFRNFCKMDATNVHNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLF 300
DFRNFCKMDA NVHNYRR IT+FEI TDVRY NQLWVIKIRGSAFLWHQVRCMVAVLF
Sbjct: 241 DFRNFCKMDAANVHNYRRCITLFEISSTDVRYNDNQLWVIKIRGSAFLWHQVRCMVAVLF 300
Query: 301 LVGKGLESPNV 311
+VGKGLESPN+
Sbjct: 301 MVGKGLESPNM 311
>K7LKT5_SOYBN (tr|K7LKT5) tRNA pseudouridine synthase OS=Glycine max PE=3 SV=1
Length = 320
Score = 554 bits (1427), Expect = e-155, Method: Compositional matrix adjust.
Identities = 262/310 (84%), Positives = 279/310 (90%)
Query: 1 MATQLSDVDHIATLQARVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRK 60
MATQLSD + I +LQARVKELE ENAKLLSQLAD HEMEKK++V E+ S KGNRK
Sbjct: 1 MATQLSDAELITSLQARVKELETENAKLLSQLADCRSHEMEKKVYVPDERGGKSKKGNRK 60
Query: 61 SEEKIEKMTGYNTRFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIR 120
SEEKIEKM GYNTRFMSHHS+RYVALKVMYFGKRFYGFASEAQMEPTVESE+FKA K R
Sbjct: 61 SEEKIEKMPGYNTRFMSHHSRRYVALKVMYFGKRFYGFASEAQMEPTVESELFKAFEKTR 120
Query: 121 LLVGDKKESQYSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDY 180
LLVG+KKESQYSRCGRTDKGVSSVGQVIAL+LRSNLKIS N G+SG +++EQHEGEIDY
Sbjct: 121 LLVGNKKESQYSRCGRTDKGVSSVGQVIALFLRSNLKISETNNGNSGVVLDEQHEGEIDY 180
Query: 181 VRVLNRVLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEH 240
VRVLNRVLPNDIRI+GWCPAPVDFHARFSCLSREYKYFFWKE LNI AMESAG KL+GEH
Sbjct: 181 VRVLNRVLPNDIRIMGWCPAPVDFHARFSCLSREYKYFFWKENLNIQAMESAGNKLVGEH 240
Query: 241 DFRNFCKMDATNVHNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLF 300
DFRNFCKMDA NVHNYRR I +FEI PTDVRY NQLWVIKIRGSAFLWHQVRCMV VLF
Sbjct: 241 DFRNFCKMDAANVHNYRRRIKLFEISPTDVRYNDNQLWVIKIRGSAFLWHQVRCMVVVLF 300
Query: 301 LVGKGLESPN 310
+VGKGLESPN
Sbjct: 301 MVGKGLESPN 310
>B9GT52_POPTR (tr|B9GT52) tRNA pseudouridine synthase OS=Populus trichocarpa
GN=POPTRDRAFT_816191 PE=3 SV=1
Length = 465
Score = 546 bits (1407), Expect = e-153, Method: Compositional matrix adjust.
Identities = 278/450 (61%), Positives = 328/450 (72%), Gaps = 37/450 (8%)
Query: 10 HIATLQARVKELEAENAKLLSQLADSHIHEMEKKL---------HVSGEKNTGSIKGNRK 60
I LQ RV+ELE ENAK S+L+ E+++K GE N+G K RK
Sbjct: 14 QITFLQNRVQELEEENAKFSSRLSSCRCDELQEKKPKEKCENLGEERGEMNSGCKKSGRK 73
Query: 61 SEEKIEKMTGYNTRFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIR 120
+ K GY+TR M+HH +RYVALKVMYFG+RFYGF+ EAQM+PTVESEIFKAL R
Sbjct: 74 --KATPKTPGYDTRIMNHHPRRYVALKVMYFGQRFYGFSLEAQMDPTVESEIFKALETTR 131
Query: 121 LLVGDKKESQYSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHE---GE 177
LL+GD+KE QYSRCGRTDKGVS+VGQVIALYLRS LK A+ SGE V E+ + GE
Sbjct: 132 LLIGDRKEIQYSRCGRTDKGVSAVGQVIALYLRSKLKDIDAHNKHSGETVPEEQDGQPGE 191
Query: 178 IDYVRVLNRVLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLI 237
IDYVRVLN VLP DIRI+GWCP P DF ARFSCLSREYKYFFW + LN+ ME+AG KLI
Sbjct: 192 IDYVRVLNGVLPKDIRIVGWCPVPSDFSARFSCLSREYKYFFWNDNLNLLVMETAGKKLI 251
Query: 238 GEHDFRNFCKMDATNVHNYRRHITMFEIFPTDV--------------------RYGGNQL 277
GEHDFRNFCKMDA VHNYRR++ FEI P D+ R+ G+QL
Sbjct: 252 GEHDFRNFCKMDAVKVHNYRRNVMSFEISPCDMSHSSGMGSVKWMITKPSIRTRFEGHQL 311
Query: 278 WVIKIRGSAFLWHQVRCMVAVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVL 337
+ IKI+GSAFLWHQVRCMVAVLF++G+GLESP VID LLDT +T RKPQY+M+ E+PLVL
Sbjct: 312 YAIKIKGSAFLWHQVRCMVAVLFMIGQGLESPEVIDALLDT-RTLRKPQYLMAPEIPLVL 370
Query: 338 QSCEFEDIKFMCSSDAGEALRIHLVNECQTFQLQAAVFHEALLNCVPLL--HDQSLPPSR 395
SCEFE +KF CSSDAG+AL +HL NEC+ + LQAA+F EALL+ +PL + S
Sbjct: 371 LSCEFEGLKFSCSSDAGQALHVHLENECRLYHLQAAIFQEALLSHLPLSIGAENKDSSSN 430
Query: 396 GTTKKKASYVPLMSRPTEPSYEERRAKLNS 425
G T+KKAS+VPLMSR TEPSYEERRAKL +
Sbjct: 431 GVTRKKASHVPLMSRETEPSYEERRAKLET 460
>M1D2V3_SOLTU (tr|M1D2V3) tRNA pseudouridine synthase OS=Solanum tuberosum
GN=PGSC0003DMG400031154 PE=3 SV=1
Length = 420
Score = 543 bits (1398), Expect = e-152, Method: Compositional matrix adjust.
Identities = 268/413 (64%), Positives = 324/413 (78%), Gaps = 5/413 (1%)
Query: 11 IATLQARVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRKSEEKIEKMTG 70
+ TL++R+KELE+ENAKL +QL++ E ++K + S KN G ++G+ K + K+ + G
Sbjct: 11 LETLRSRMKELESENAKLSAQLSNCSCQETKEKGNGSVMKN-GVLEGHGKKKNKLRDL-G 68
Query: 71 YNTRFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLVGDKKESQ 130
Y M HHSKRYVALKVMYFG RFYGFASEAQM+PTVE EIFKAL + RL+ GDKKE Q
Sbjct: 69 YGA--MMHHSKRYVALKVMYFGLRFYGFASEAQMDPTVEGEIFKALERTRLIFGDKKELQ 126
Query: 131 YSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDYVRVLNRVLPN 190
YSRCGRTDKGVSSVGQVIAL+LRSN + S + GE E+ GEIDYVRVLNRVLPN
Sbjct: 127 YSRCGRTDKGVSSVGQVIALFLRSNHRESRGDNKYPGENSIEESFGEIDYVRVLNRVLPN 186
Query: 191 DIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMDA 250
DIRI+GW P PV F ARFSCLSR YKYFFW+ LNI AM++A K +GEHDFRNFCKMDA
Sbjct: 187 DIRIMGWSPIPVGFSARFSCLSRVYKYFFWQGNLNITAMQTAAEKFLGEHDFRNFCKMDA 246
Query: 251 TNVHNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLESPN 310
NVHNYRRHI FEI P + +QL ++KI+GSAFLWHQVRCMVAVLFL+G+GLESPN
Sbjct: 247 DNVHNYRRHIISFEILPFNESDKADQLMIMKIKGSAFLWHQVRCMVAVLFLIGQGLESPN 306
Query: 311 VIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAGEALRIHLVNECQTFQL 370
VID+LLD +TPRKPQ+ M+ E+PLVLQSCEFE +KF+CSSD +AL HL EC++++L
Sbjct: 307 VIDLLLDIERTPRKPQFPMAPEIPLVLQSCEFEGLKFICSSDTNQALNEHLERECRSYKL 366
Query: 371 QAAVFHEALLNCVPLLHDQSLPPSRGTTKKKASYVPLMSRPTEPSYEERRAKL 423
Q+A+FHEALLN + D ++ S T KK AS++PL+SRPTEPSYEERR KL
Sbjct: 367 QSAIFHEALLNSSCIEIDNNI-SSDHTKKKGASHIPLLSRPTEPSYEERRKKL 418
>K4BTK1_SOLLC (tr|K4BTK1) tRNA pseudouridine synthase OS=Solanum lycopersicum
GN=Solyc04g072140.2 PE=3 SV=1
Length = 420
Score = 539 bits (1388), Expect = e-151, Method: Compositional matrix adjust.
Identities = 265/415 (63%), Positives = 327/415 (78%), Gaps = 5/415 (1%)
Query: 11 IATLQARVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRKSEEKIEKMTG 70
+ TL++R+K LE+ENAKL +QL++ E ++K + S KN G ++G+ K + K+ + G
Sbjct: 11 LETLRSRMKVLESENAKLSAQLSNCSCQESKEKGNDSVLKN-GVLEGHGKKKNKLRDL-G 68
Query: 71 YNTRFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLVGDKKESQ 130
Y M HHSKRYVALKVMYFG RFYGFASEAQM+PTVE E+FKAL + RL+ GDKKE Q
Sbjct: 69 YGA--MMHHSKRYVALKVMYFGLRFYGFASEAQMDPTVEGELFKALERTRLIFGDKKELQ 126
Query: 131 YSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDYVRVLNRVLPN 190
YSRCGRTDKGVSSVGQVIAL+LRSN + S + GE E+ GEIDYVRVLNRVLPN
Sbjct: 127 YSRCGRTDKGVSSVGQVIALFLRSNHRESRGDNKYPGENSIEESCGEIDYVRVLNRVLPN 186
Query: 191 DIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMDA 250
DIRI+GW P PV F ARFSCLSR YKYFFW+ LN+ AM++A K +GEHDFRNFCKMDA
Sbjct: 187 DIRIMGWSPIPVGFSARFSCLSRVYKYFFWQGNLNLTAMQTAAKKFLGEHDFRNFCKMDA 246
Query: 251 TNVHNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLESPN 310
NVHNYRRHI FEI P + R +QL ++KI+GSAFLWHQVRCMVAVLFL+G+GLESPN
Sbjct: 247 DNVHNYRRHIISFEIVPFNERDNDDQLMIMKIKGSAFLWHQVRCMVAVLFLIGQGLESPN 306
Query: 311 VIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAGEALRIHLVNECQTFQL 370
VID+LLD +TPRKPQ+ M+ E+PLVLQSCEFE +KF+CSSD +AL HL EC++++L
Sbjct: 307 VIDLLLDIERTPRKPQFPMAPEIPLVLQSCEFEGLKFICSSDTKQALNEHLERECRSYKL 366
Query: 371 QAAVFHEALLNCVPLLHDQSLPPSRGTTKKKASYVPLMSRPTEPSYEERRAKLNS 425
Q+A++HEALLN + D ++ S T KK+AS++PL+SRPTEPSYEERR KL++
Sbjct: 367 QSAIYHEALLNSSCIEIDNNI-SSDHTKKKRASHIPLLSRPTEPSYEERRKKLDA 420
>K7LKT6_SOYBN (tr|K7LKT6) tRNA pseudouridine synthase OS=Glycine max PE=3 SV=1
Length = 300
Score = 511 bits (1317), Expect = e-142, Method: Compositional matrix adjust.
Identities = 246/310 (79%), Positives = 263/310 (84%), Gaps = 20/310 (6%)
Query: 1 MATQLSDVDHIATLQARVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRK 60
MATQLSD + I +LQARVK MEKK++V E+ S KGNRK
Sbjct: 1 MATQLSDAELITSLQARVK--------------------MEKKVYVPDERGGKSKKGNRK 40
Query: 61 SEEKIEKMTGYNTRFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIR 120
SEEKIEKM GYNTRFMSHHS+RYVALKVMYFGKRFYGFASEAQMEPTVESE+FKA K R
Sbjct: 41 SEEKIEKMPGYNTRFMSHHSRRYVALKVMYFGKRFYGFASEAQMEPTVESELFKAFEKTR 100
Query: 121 LLVGDKKESQYSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDY 180
LLVG+KKESQYSRCGRTDKGVSSVGQVIAL+LRSNLKIS N G+SG +++EQHEGEIDY
Sbjct: 101 LLVGNKKESQYSRCGRTDKGVSSVGQVIALFLRSNLKISETNNGNSGVVLDEQHEGEIDY 160
Query: 181 VRVLNRVLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEH 240
VRVLNRVLPNDIRI+GWCPAPVDFHARFSCLSREYKYFFWKE LNI AMESAG KL+GEH
Sbjct: 161 VRVLNRVLPNDIRIMGWCPAPVDFHARFSCLSREYKYFFWKENLNIQAMESAGNKLVGEH 220
Query: 241 DFRNFCKMDATNVHNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLF 300
DFRNFCKMDA NVHNYRR I +FEI PTDVRY NQLWVIKIRGSAFLWHQVRCMV VLF
Sbjct: 221 DFRNFCKMDAANVHNYRRRIKLFEISPTDVRYNDNQLWVIKIRGSAFLWHQVRCMVVVLF 280
Query: 301 LVGKGLESPN 310
+VGKGLESPN
Sbjct: 281 MVGKGLESPN 290
>D7KJF1_ARALL (tr|D7KJF1) tRNA pseudouridine synthase OS=Arabidopsis lyrata
subsp. lyrata GN=ARALYDRAFT_473569 PE=3 SV=1
Length = 443
Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust.
Identities = 246/419 (58%), Positives = 308/419 (73%), Gaps = 22/419 (5%)
Query: 14 LQARVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRKSEEKIEKMTGYNT 73
L+ RVKELE ENAKLLSQ++ +ME K H ++ S+ R+ + G
Sbjct: 28 LRNRVKELEVENAKLLSQVSSCQCQQMEVK-HDRSVSDSSSLVRRRRVRK------GDKN 80
Query: 74 RFMSHH-SKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLVGDKKESQYS 132
SH SKRYVALK+MYFGKRFYGF++EAQMEP++ESE+FKAL + RLLVGDKK+S YS
Sbjct: 81 SIPSHLISKRYVALKIMYFGKRFYGFSAEAQMEPSIESEVFKALERTRLLVGDKKDSCYS 140
Query: 133 RCGRTDKGVSSVGQVIALYLRSNLKISGANT-----GSSGEIVEEQHEGEIDYVRVLNRV 187
RCGRTDKGVSS GQVIAL+LRS LK ++ G +GE E DYVRVLNR
Sbjct: 141 RCGRTDKGVSSTGQVIALFLRSRLKSPPGDSKAQVNGKTGE------RPEYDYVRVLNRA 194
Query: 188 LPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCK 247
LP+DIR++GW PAPVDFHARFSC +REYKYFFW++ LN+ AM+ AG K IGEHDFRNFCK
Sbjct: 195 LPDDIRVIGWSPAPVDFHARFSCYAREYKYFFWRQNLNLSAMDIAGKKFIGEHDFRNFCK 254
Query: 248 MDATNVHNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLE 307
MD NVH Y R +T FE+ P + G+QL +RGSAFLWHQ+RCMVAVLF++G+G+E
Sbjct: 255 MDVANVHCYTRRVTFFEVSPCQNSHEGDQLCTFTMRGSAFLWHQIRCMVAVLFMIGQGVE 314
Query: 308 SPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAGEALRIHLVNECQT 367
S +VID LLDT KTPRKPQY+++SE+PLVL++CEFE++ F+CS A E+LR H NE T
Sbjct: 315 SVDVIDTLLDTKKTPRKPQYLLASEIPLVLRTCEFENVDFICSPGAAESLRSHFKNESLT 374
Query: 368 FQLQAAVFHEALLNCVPLLH---DQSLPPSRGTTKKKASYVPLMSRPTEPSYEERRAKL 423
+QL++ ++ EAL NC+PL + ++S KK+A +VPL+SRPTEPSYEER AKL
Sbjct: 375 YQLESVIYQEALRNCLPLSNVSTEESSCNGIEKKKKRAEHVPLLSRPTEPSYEERAAKL 433
>Q9C5K6_ARATH (tr|Q9C5K6) tRNA pseudouridine synthase OS=Arabidopsis thaliana
GN=AT1G34150 PE=2 SV=1
Length = 446
Score = 496 bits (1277), Expect = e-138, Method: Compositional matrix adjust.
Identities = 244/431 (56%), Positives = 310/431 (71%), Gaps = 23/431 (5%)
Query: 3 TQLSDVDHIATLQARVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRKSE 62
++++ + L+ RVKELE ENAKLLSQ++ +ME K + S+ +
Sbjct: 17 SEIAKETELVFLRNRVKELEVENAKLLSQVSSCQCQQMEVK-------HDRSLSDSSSLV 69
Query: 63 EKIEKMTGYNTRFMSHH-SKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRL 121
+ G SH SKRYVALK+MYFGKRFYGF++EAQMEP++ESE+FKAL + RL
Sbjct: 70 RRRRVRKGDKNSIPSHLISKRYVALKIMYFGKRFYGFSAEAQMEPSIESEVFKALERTRL 129
Query: 122 LVGDKKESQYSRCGRTDKGVSSVGQVIALYLRSNLKISGANT-----GSSGEIVEEQHEG 176
LVGDKK+S YSRCGRTDKGVSS GQVIAL+LRS LK ++ G +GE
Sbjct: 130 LVGDKKDSCYSRCGRTDKGVSSTGQVIALFLRSRLKSPPGDSKAQVNGRTGE------RP 183
Query: 177 EIDYVRVLNRVLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKL 236
E DYVRVLNR LP+DIR++GW PAP+DFHARFSC +REYKYFFW++ LN+ AM+ AG K
Sbjct: 184 EYDYVRVLNRALPDDIRVIGWSPAPIDFHARFSCYAREYKYFFWRQNLNLSAMDFAGKKF 243
Query: 237 IGEHDFRNFCKMDATNVHNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMV 296
IGEHDFRNFCKMD NVH Y R +T FE+ P + G+QL +RGSAFLWHQ+RCMV
Sbjct: 244 IGEHDFRNFCKMDVANVHCYTRRVTFFEVSPCQNSHEGDQLCTFTMRGSAFLWHQIRCMV 303
Query: 297 AVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAGEA 356
AVLF++G+G+ES +VID LLDT KTPRKPQY+++SE+PLVL++CEFE++ F+CS A E+
Sbjct: 304 AVLFMIGQGVESVDVIDTLLDTKKTPRKPQYLLASEIPLVLRTCEFENVDFICSPGAAES 363
Query: 357 LRIHLVNECQTFQLQAAVFHEALLNCVPLLHDQSLPPSRGT----TKKKASYVPLMSRPT 412
LR H NE T+QL++ ++ EAL NC+PL ++ S S KK+A +VPL+SRPT
Sbjct: 364 LRSHFKNESLTYQLESVIYQEALRNCLPLSNNVSTEESSCNGVEKKKKRAEHVPLLSRPT 423
Query: 413 EPSYEERRAKL 423
EPSYEER AKL
Sbjct: 424 EPSYEERTAKL 434
>M4EGX1_BRARP (tr|M4EGX1) tRNA pseudouridine synthase OS=Brassica rapa subsp.
pekinensis GN=Bra028036 PE=3 SV=1
Length = 426
Score = 484 bits (1246), Expect = e-134, Method: Compositional matrix adjust.
Identities = 241/415 (58%), Positives = 307/415 (73%), Gaps = 13/415 (3%)
Query: 11 IATLQARVKELEAENAKLLSQLADSHIHEMEK-KLHVSGEKNTGSIKGNRKSEEKIEKMT 69
+A+L+ RVKELEAENAKLLSQ++ + + + SG S +G +++++ I
Sbjct: 13 LASLRNRVKELEAENAKLLSQVSSCQCQQHDDVPVLDSGSLVRRSRRGRKRADKSIP--- 69
Query: 70 GYNTRFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLVGDKKES 129
+ SKRYVALK+MYFGKRFYGF++EAQMEP++ESEIFKAL + RLLVGD KES
Sbjct: 70 ------IHLISKRYVALKIMYFGKRFYGFSAEAQMEPSIESEIFKALERTRLLVGDIKES 123
Query: 130 QYSRCGRTDKGVSSVGQVIALYLRSNLKISGANT-GSSGEIVEEQHEGEIDYVRVLNRVL 188
YSRCGRTDKGVSS GQVIAL+LRS LK ++ + E + + E DYVRVLNR L
Sbjct: 124 NYSRCGRTDKGVSSTGQVIALFLRSRLKTPSIDSEAHANEKINAR--PEYDYVRVLNRAL 181
Query: 189 PNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKM 248
P+DIR+LGW P PVDFHARFSC +REYKYFFW++ LN+ AM+ AG K IGEHDFRNFCKM
Sbjct: 182 PDDIRVLGWSPVPVDFHARFSCSAREYKYFFWRQNLNLSAMDIAGKKFIGEHDFRNFCKM 241
Query: 249 DATNVHNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLES 308
D NVH Y R +T F++ P + G+QL +RGSAFLWHQVR MVAVLF++G+G+ES
Sbjct: 242 DVANVHCYTRRVTFFDVSPCQNSHEGDQLCTFTMRGSAFLWHQVRAMVAVLFMIGQGVES 301
Query: 309 PNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAGEALRIHLVNECQTF 368
+VID LLDT KTP+KPQY+++SE+PLVL++CEFE++ F+CSS A E+LR H E T+
Sbjct: 302 VDVIDTLLDTKKTPKKPQYLLASEIPLVLRTCEFENVNFICSSGALESLRSHFKKESLTY 361
Query: 369 QLQAAVFHEALLNCVPLLHDQSLPPSRGTTKKKASYVPLMSRPTEPSYEERRAKL 423
QL++ +F EAL NC+P+ +D+ KK A +VPL+SRPTEPSYEER AKL
Sbjct: 362 QLESVIFQEALRNCLPIGNDEISCNIEEKKKKAAIHVPLLSRPTEPSYEERSAKL 416
>R0GXN8_9BRAS (tr|R0GXN8) Uncharacterized protein OS=Capsella rubella
GN=CARUB_v10009323mg PE=4 SV=1
Length = 404
Score = 460 bits (1183), Expect = e-127, Method: Compositional matrix adjust.
Identities = 226/397 (56%), Positives = 286/397 (72%), Gaps = 24/397 (6%)
Query: 3 TQLSDVDHIATLQARVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRKSE 62
++++ + L+ RVKELEAENA+LLSQ++ +ME K H E ++ S+ R+
Sbjct: 17 SEIAKDTELVFLRNRVKELEAENAELLSQVSSCQCQQMEVK-HDRSELDSSSLVRRRRVR 75
Query: 63 EKIEKMTGYNTRFMSHH-SKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRL 121
+ G SH SKRYVALK+MYFGKRFYGF++EAQMEP++ESE+FKAL + RL
Sbjct: 76 K------GDKNSIPSHLISKRYVALKIMYFGKRFYGFSAEAQMEPSIESEVFKALERTRL 129
Query: 122 LVGDKKESQYSRCGRTDKGVSSVGQVIALYLRSNLKISGAN--TGSSGEIVEEQHEGEID 179
L+GDKK+S YSRCGRTDKGVSS GQVIAL+LRS LK G GE E D
Sbjct: 130 LIGDKKDSCYSRCGRTDKGVSSTGQVIALFLRSRLKAPTVEQVNGKMGE------RPEYD 183
Query: 180 YVRVLNRVLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGE 239
YVRVLNR LP+DIR+ GW PAPVDFHARFSC +REYKYFFW++ LN+ AM+ AG K IGE
Sbjct: 184 YVRVLNRALPDDIRVTGWSPAPVDFHARFSCSAREYKYFFWRQNLNLSAMDIAGKKFIGE 243
Query: 240 HDFRNFCKMDATNVHNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVL 299
HDFRNFCKMD NVH Y R +T F++ P + G+QL +RGSAFLWHQ+RCMVAVL
Sbjct: 244 HDFRNFCKMDVANVHCYTRRVTFFDVSPCQNSHEGDQLCTFTMRGSAFLWHQIRCMVAVL 303
Query: 300 FLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAGEALRI 359
F++G+G+ES +VID LLDT KTPRKPQY+++SE+PLVL++CEFE++ F+CS A E+L+
Sbjct: 304 FMIGQGVESVDVIDTLLDTKKTPRKPQYLLASEIPLVLRTCEFENVNFICSPGAAESLQS 363
Query: 360 HLVNECQTFQLQAAVFHEALLNCVPLLHDQSLPPSRG 396
H NE T+QL++ ++ EAL NC LPPS G
Sbjct: 364 HFKNESLTYQLESVIYQEALRNC--------LPPSSG 392
>B4FYI2_MAIZE (tr|B4FYI2) tRNA pseudouridine synthase OS=Zea mays PE=2 SV=1
Length = 457
Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust.
Identities = 238/448 (53%), Positives = 302/448 (67%), Gaps = 46/448 (10%)
Query: 11 IATLQARVKELEAENAKL------------------LSQLADSHIHE---MEKKLHVSGE 49
+A L+ RV+ELEAEN +L ++ + H+ MEK L +
Sbjct: 16 VAALRMRVQELEAENQRLARIASTCTCGFKEGSVGSITAHHNVKFHQNSTMEKDLSSPFD 75
Query: 50 ----KNTGSIKGNRKSEE--------KIEKMTGYNTRFMSHHSKRYVALKVMYFGKRFYG 97
N ++ NR +++ K K TG +SH KR VALKVMYFG+RFYG
Sbjct: 76 HTVISNANEMQCNRNADDNGLPEDSSKHTKRTGRKVGILSHCPKRLVALKVMYFGQRFYG 135
Query: 98 FASEAQMEPTVESEIFKALAKIRLLVGDKKESQYSRCGRTDKGVSSVGQVIALYLRSNLK 157
F+SE +EPTVESEIFKAL + +L+V ++KES YSRCGRTDKGVS+ GQVI+LYLRSN+K
Sbjct: 136 FSSEGNIEPTVESEIFKALERAKLMVANRKESCYSRCGRTDKGVSATGQVISLYLRSNIK 195
Query: 158 ISGANTGSSGEIVEEQHEGEIDYVRVLNRVLPNDIRILGWCPAPVDFHARFSCLSREYKY 217
G G++++E+ EIDYV+VLNR+LP DIR+LGWCP P DFHARF+CLSREYKY
Sbjct: 196 DVG------GDMLDER--SEIDYVKVLNRILPRDIRVLGWCPVPADFHARFTCLSREYKY 247
Query: 218 FFWKEGLNIPAMESAGIKLIGEHDFRNFCKMDATNVHNYRRHITMFEIFPTDVRYGGNQL 277
FWK L+I M+ A K IGEHDFRNFCKMDA NV NYRRHIT F I D R ++L
Sbjct: 248 LFWKGDLDILEMQKAASKFIGEHDFRNFCKMDAANVSNYRRHITEFTISACDRRSNNDEL 307
Query: 278 WVIKIRGSAFLWHQVRCMVAVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVL 337
+ I+GSAFLWHQVRCMVAVLFL+G+GLESP+V+D LLD KT RKPQY M+ E+PL+L
Sbjct: 308 CSMTIKGSAFLWHQVRCMVAVLFLIGQGLESPSVVDSLLDIMKTSRKPQYKMAPELPLIL 367
Query: 338 QSCEFEDIKFMCSSDAGEALRIHLVNECQTFQLQAAVFHEALLNCVPLLHDQSLPPSRGT 397
QSC F+ FMCS+DA +L HL +E + LQA +FH A +C+P P S T
Sbjct: 368 QSCLFDKANFMCSADASRSLTEHLNDEYRHHMLQAEIFHIA-SSCLPFPE----PNSSET 422
Query: 398 TKKKASYVPLMSRPTEPSYEERRAKLNS 425
+KK +++PL+SR TEPSYEER +K+ +
Sbjct: 423 PQKKRNHIPLLSRETEPSYEERISKVKA 450
>M0S830_MUSAM (tr|M0S830) tRNA pseudouridine synthase OS=Musa acuminata subsp.
malaccensis PE=3 SV=1
Length = 383
Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust.
Identities = 220/363 (60%), Positives = 274/363 (75%), Gaps = 23/363 (6%)
Query: 82 RYVALKVMYFGKR-FYGFASEAQMEPTVESEIFKALAKIRLLVGDKKESQYSRCGRTDKG 140
RYVALK+MYFG+R FYGFASEAQM+PT+ESEIFKAL + +LL+G K++S YSRCGRTDKG
Sbjct: 17 RYVALKIMYFGQRLFYGFASEAQMDPTIESEIFKALERTKLLIGTKEDSIYSRCGRTDKG 76
Query: 141 VSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDYVRVLNRVLPNDIRILGWCPA 200
VSS GQVI+LYLRSNLK +G T + +E + GEIDYVRVLN+VLP DIR++GWCP
Sbjct: 77 VSSTGQVISLYLRSNLKDTGGYTKNHTTTLEVR--GEIDYVRVLNKVLPGDIRVIGWCPV 134
Query: 201 PVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMDATNVHNYRRHI 260
P DFH+RFSCLSREY+Y FWK L++ AM+ A +K IGE+DFRNFCKMDA NV+NYRR I
Sbjct: 135 PTDFHSRFSCLSREYRYLFWKGNLDVSAMQQAAMKFIGEYDFRNFCKMDAANVNNYRRRI 194
Query: 261 TMFEIFPTDVR-YGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLESPNVIDMLLDTN 319
T F+I D R ++LW + I+GSAFLWHQVRCMVAVLF+VG G ESP+VID+LLDT
Sbjct: 195 TFFDISSLDRRSIDVDELWAVTIKGSAFLWHQVRCMVAVLFMVGHGFESPDVIDVLLDTK 254
Query: 320 KTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAGEALRIHLVNECQTFQLQAAVFHEAL 379
KTPRKPQY M+ E+PL+L+ CEFED++F+CSS+A L HL NE Q LQAA+F+EA
Sbjct: 255 KTPRKPQYNMAPELPLILRFCEFEDLEFICSSEARRTLHEHLKNEVQRHMLQAAIFNEA- 313
Query: 380 LNCV------------------PLLHDQSLPPSRGTTKKKASYVPLMSRPTEPSYEERRA 421
L+C+ ++S S ++KK ++PL+ R TEPSY+ERRA
Sbjct: 314 LSCLSTAGGHEFSLYSGQIFTCAFGKEESAGQSSEFSRKKKCHIPLLRRATEPSYDERRA 373
Query: 422 KLN 424
KL+
Sbjct: 374 KLD 376
>C5WYL0_SORBI (tr|C5WYL0) tRNA pseudouridine synthase OS=Sorghum bicolor
GN=Sb01g033960 PE=3 SV=1
Length = 459
Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust.
Identities = 239/449 (53%), Positives = 300/449 (66%), Gaps = 48/449 (10%)
Query: 11 IATLQARVKELEAENAKLLSQLADS----------------------HIHEMEKKLHVSG 48
+ATL+ RV+ELEAEN +L +++A S +EK L
Sbjct: 18 VATLRTRVQELEAENQRL-ARIASSCTCGFKESNVGSITAQHNAKFRQSSTLEKDLSFQF 76
Query: 49 EKNTGS----IKGNRKSE--------EKIEKMTGYNTRFMSHHSKRYVALKVMYFGKRFY 96
+ S ++ N +E K K TG + +SH KR VALKVMYFG+RFY
Sbjct: 77 DHTVVSTANEVQCNVNAEGNGLPDDSSKRTKRTGRHVGNLSHCPKRLVALKVMYFGQRFY 136
Query: 97 GFASEAQMEPTVESEIFKALAKIRLLVGDKKESQYSRCGRTDKGVSSVGQVIALYLRSNL 156
GF+SE EPTVESEIFKAL + +L+VG +KES YSRCGRTDKGVS+ GQVI+LYLRSN+
Sbjct: 137 GFSSEGNTEPTVESEIFKALERAKLMVGSRKESCYSRCGRTDKGVSATGQVISLYLRSNI 196
Query: 157 KISGANTGSSGEIVEEQHEGEIDYVRVLNRVLPNDIRILGWCPAPVDFHARFSCLSREYK 216
K G G++++E+ EIDYV+VLNR+LP DIR+LGWCP P DFHARF+CLSREYK
Sbjct: 197 KDVG------GDMLDER--SEIDYVKVLNRILPRDIRVLGWCPVPADFHARFTCLSREYK 248
Query: 217 YFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMDATNVHNYRRHITMFEIFPTDVRYGGNQ 276
Y FWK L+I M+ A K IGEHDFRNFCKMDA NV NYRR IT F I D R ++
Sbjct: 249 YLFWKGDLDILEMQKAASKFIGEHDFRNFCKMDAANVSNYRRRITEFTISACDRRSNNDE 308
Query: 277 LWVIKIRGSAFLWHQVRCMVAVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLV 336
L + I+GSAFLWHQVRCMVAVLFL+G+GLESP+V+D LLD KTPRKPQY M+ E+PL+
Sbjct: 309 LCSMMIKGSAFLWHQVRCMVAVLFLIGQGLESPSVVDSLLDITKTPRKPQYKMAPELPLI 368
Query: 337 LQSCEFEDIKFMCSSDAGEALRIHLVNECQTFQLQAAVFHEALLNCVPLLHDQSLPPSRG 396
L+SC F+ FMCSSDA ++L H +E LQA +FH A +C+P P S
Sbjct: 369 LRSCLFDKANFMCSSDASQSLTEHFNDEYHHHMLQAEIFHIA-SSCLPFPE----PNSLE 423
Query: 397 TTKKKASYVPLMSRPTEPSYEERRAKLNS 425
T +KK +++PL+SR TEPSYEER +K+ +
Sbjct: 424 TLQKKRNHIPLLSRQTEPSYEERISKVKT 452
>K4A9H1_SETIT (tr|K4A9H1) tRNA pseudouridine synthase OS=Setaria italica
GN=Si035527m.g PE=3 SV=1
Length = 468
Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust.
Identities = 220/379 (58%), Positives = 276/379 (72%), Gaps = 21/379 (5%)
Query: 55 IKGNRKSE--------EKIEKMTGYNTRFMSHHSKRYVALKVMYFGKRFYGFASEAQMEP 106
I+ NR +E K K TG+ +SH KR VALKVMYFG+RFYGF+SE MEP
Sbjct: 97 IQCNRNAEGNGLPDDSSKRTKRTGHQVAILSHCPKRLVALKVMYFGQRFYGFSSEGNMEP 156
Query: 107 TVESEIFKALAKIRLLVGDKKESQYSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSS 166
TVESEIFKAL + +L+V +KES YSRCGRTDKGVS+ GQVI+LYLRSN+K G +
Sbjct: 157 TVESEIFKALERAKLMVASRKESCYSRCGRTDKGVSASGQVISLYLRSNIKDVGED---- 212
Query: 167 GEIVEEQHEGEIDYVRVLNRVLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNI 226
+++E+ EIDYV+VLNR+LP DIR+LGWCP P DFHARF+CL REYKY FW+ L+I
Sbjct: 213 --MLDER--SEIDYVKVLNRILPRDIRVLGWCPVPADFHARFTCLGREYKYLFWRGDLDI 268
Query: 227 PAMESAGIKLIGEHDFRNFCKMDATNVHNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSA 286
M+ A K IGEHDFRNFCKMDA NV NY+R IT F I D R ++L + I+G+A
Sbjct: 269 LEMQKAASKFIGEHDFRNFCKMDAANVSNYKRRITEFTISSCDKRSYNDELCSMTIKGTA 328
Query: 287 FLWHQVRCMVAVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIK 346
FLWHQVRCMVAVLFL+G+GLESP+V+D LLD KTPRKPQY M++E+PL+L+SC+F+
Sbjct: 329 FLWHQVRCMVAVLFLIGQGLESPSVVDSLLDITKTPRKPQYKMAAELPLILRSCQFDKAD 388
Query: 347 FMCSSDAGEALRIHLVNECQTFQLQAAVFHEALLNCVPLLHDQSLPPSRGTTKKKASYVP 406
FMCSSD ++L HL +E + LQA +FHEA L+C+P L T +KK +++P
Sbjct: 389 FMCSSDVSQSLTEHLNDEYHHYMLQAEIFHEA-LSCLPCPESNPLE----TLQKKRNHIP 443
Query: 407 LMSRPTEPSYEERRAKLNS 425
L+SR TEPSYEER AK+ +
Sbjct: 444 LLSRQTEPSYEERIAKVKT 462
>J3LP99_ORYBR (tr|J3LP99) tRNA pseudouridine synthase OS=Oryza brachyantha
GN=OB03G28750 PE=3 SV=1
Length = 428
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 228/419 (54%), Positives = 289/419 (68%), Gaps = 16/419 (3%)
Query: 11 IATLQARVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRKSEEKIEK--M 68
+ L+ RV+ELE EN +L ++ E + S T S+ + + +K K
Sbjct: 20 VDALRRRVQELERENQRLAKIVSTCSCGSKEDSV-ASSPVLTESVCSSSQELQKNMKSHC 78
Query: 69 TGYNTRFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLVGDKKE 128
G+ + H KR VALK+MYFG+RF+GFASEA EPTVESEIFKAL + +LLVG +KE
Sbjct: 79 AGHQAGVVRHCPKRLVALKIMYFGQRFFGFASEAHTEPTVESEIFKALERAKLLVGSRKE 138
Query: 129 SQYSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDYVRVLNRVL 188
S YSRCGRTDKGVS+ GQVI+L+LRSN+K +G + +E EIDYV+VLNR+L
Sbjct: 139 SCYSRCGRTDKGVSATGQVISLFLRSNIKDAG--------LAVVDNESEIDYVKVLNRIL 190
Query: 189 PNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKM 248
P+DIR++GWCP DF ARFSCL REY Y FWK L++ M+ A K IGEHD+RNFCKM
Sbjct: 191 PHDIRVIGWCPVAADFLARFSCLGREYIYLFWKGDLDVLKMQKAAAKFIGEHDYRNFCKM 250
Query: 249 DATNVHNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLES 308
DA NV NYRRHIT F I + R ++LW I I+GSAFLWHQVRCMVAVLFL+G+GLE
Sbjct: 251 DAANVSNYRRHITDFNISSYNQRSNYDELWAITIKGSAFLWHQVRCMVAVLFLIGQGLEL 310
Query: 309 PNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAGEALRIHLVNECQTF 368
P ++D LLD KTPRKPQY M+SE+PL+L+SC F+++ FM SSDA +AL HL +E +
Sbjct: 311 PCIVDSLLDITKTPRKPQYKMASEIPLILRSCLFDEVNFMSSSDASQALIEHLKDEYHQY 370
Query: 369 QLQAAVFHEALLNCVPLLHDQSLPPSRGTTKKKASYVPLMSRPTEPSYEERRAKLNSST 427
LQAA+F EA L+C+ S P KK +++PLMSR TEPSYEER AKL + +
Sbjct: 371 MLQAAIFREA-LSCLTFRERNSFEPHH----KKRNHIPLMSRQTEPSYEERVAKLKTKS 424
>M0W4C2_HORVD (tr|M0W4C2) tRNA pseudouridine synthase OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 381
Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust.
Identities = 223/369 (60%), Positives = 264/369 (71%), Gaps = 15/369 (4%)
Query: 60 KSEEKIEKMTGYNTRFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKI 119
K K K TG+ +SH KR +ALK+MYFG+RFYGFASEA EPTVESEIFKAL +
Sbjct: 23 KIRRKHSKRTGHQVGNVSHCQKRLIALKIMYFGQRFYGFASEAHTEPTVESEIFKALERA 82
Query: 120 RLLVGDKKESQYSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEID 179
RLLVG K++ YSRCGRTDKGVS+ GQVI+LYLRSN K +G N GE EID
Sbjct: 83 RLLVGSIKDACYSRCGRTDKGVSATGQVISLYLRSNFKEAGGNV--LGE------RSEID 134
Query: 180 YVRVLNRVLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGE 239
YV VLNR LP DIR++GWCP DF ARFSCL REYKY FWK GL++ M+ A K IGE
Sbjct: 135 YVSVLNRNLPRDIRVIGWCPVSADFLARFSCLGREYKYLFWKGGLDVSKMQEAAFKFIGE 194
Query: 240 HDFRNFCKMDATNVHNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVL 299
HD RNFCKMDA NV NY+R IT F I D R ++LW + IRGSAFLWHQVRCMVAVL
Sbjct: 195 HDLRNFCKMDAANVSNYKRCITDFTISACDQRSNHDELWSMNIRGSAFLWHQVRCMVAVL 254
Query: 300 FLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAGEALRI 359
FLVG+GLESP V+D LLD KTPRKPQY M+ E+PL+L+SC F+ + FMCSSDA +AL
Sbjct: 255 FLVGQGLESPCVVDSLLDITKTPRKPQYTMAPELPLILRSCLFDRVNFMCSSDASQALIE 314
Query: 360 HLVNECQTFQLQAAVFHEALLN-CVPLLHDQSLPPSRGTTKKKASYVPLMSRPTEPSYEE 418
HL +E + LQAA+F EAL C+P + P KKK ++PL+SR TEPSYEE
Sbjct: 315 HLKDEYHQYMLQAAIFDEALTCLCIPEANPSESP------KKKRKHIPLLSRETEPSYEE 368
Query: 419 RRAKLNSST 427
RRA++ + +
Sbjct: 369 RRARVKAKS 377
>B7ZX30_MAIZE (tr|B7ZX30) tRNA pseudouridine synthase OS=Zea mays PE=2 SV=1
Length = 486
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 222/383 (57%), Positives = 277/383 (72%), Gaps = 21/383 (5%)
Query: 51 NTGSIKGNRKSEE--------KIEKMTGYNTRFMSHHSKRYVALKVMYFGKRFYGFASEA 102
N ++ NR +++ K K TG +SH KR VALKVMYFG+RFYGF+SE
Sbjct: 110 NANEMQCNRNADDNGLPEDSSKHTKRTGRKVGILSHCPKRLVALKVMYFGQRFYGFSSEG 169
Query: 103 QMEPTVESEIFKALAKIRLLVGDKKESQYSRCGRTDKGVSSVGQVIALYLRSNLKISGAN 162
+EPTVESEIFKAL + +L+V ++KES YSRCGRTDKGVS+ GQVI+LYLRSN+K G
Sbjct: 170 NIEPTVESEIFKALERAKLMVANRKESCYSRCGRTDKGVSATGQVISLYLRSNIKDVG-- 227
Query: 163 TGSSGEIVEEQHEGEIDYVRVLNRVLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKE 222
G++++E+ EIDYV+VLNR+LP DIR+LGWCP P DFHARF+CLSREYKY FWK
Sbjct: 228 ----GDMLDER--SEIDYVKVLNRILPRDIRVLGWCPVPADFHARFTCLSREYKYLFWKG 281
Query: 223 GLNIPAMESAGIKLIGEHDFRNFCKMDATNVHNYRRHITMFEIFPTDVRYGGNQLWVIKI 282
L+I M+ A K IGEHDFRNFCKMDA NV NYRRHIT F I D R ++L + I
Sbjct: 282 DLDILEMQKAASKFIGEHDFRNFCKMDAANVSNYRRHITEFTISACDRRSNNDELCSMTI 341
Query: 283 RGSAFLWHQVRCMVAVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEF 342
+GSAFLWHQVRCMVAVLFL+G+GLESP+V+D LLD KT RKPQY M+ E+PL+LQSC F
Sbjct: 342 KGSAFLWHQVRCMVAVLFLIGQGLESPSVVDSLLDIMKTSRKPQYKMAPELPLILQSCLF 401
Query: 343 EDIKFMCSSDAGEALRIHLVNECQTFQLQAAVFHEALLNCVPLLHDQSLPPSRGTTKKKA 402
+ FMCS+DA +L HL +E + LQA +FH A +C+P P S T +KK
Sbjct: 402 DKANFMCSADASRSLTEHLNDEYRHHMLQAEIFHIA-SSCLPFPE----PNSSETPQKKR 456
Query: 403 SYVPLMSRPTEPSYEERRAKLNS 425
+++PL+SR TEPSYEER +K+ +
Sbjct: 457 NHIPLLSRETEPSYEERISKVKA 479
>Q9FX23_ARATH (tr|Q9FX23) tRNA pseudouridine synthase OS=Arabidopsis thaliana
GN=F12G12.3 PE=3 SV=1
Length = 442
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 223/419 (53%), Positives = 286/419 (68%), Gaps = 44/419 (10%)
Query: 3 TQLSDVDHIATLQARVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRKSE 62
++++ + L+ RVKELE ENAKLLSQ++ +ME K + S+ +
Sbjct: 17 SEIAKETELVFLRNRVKELEVENAKLLSQVSSCQCQQMEVK-------HDRSLSDSSSLV 69
Query: 63 EKIEKMTGYNTRFMSHH-SKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRL 121
+ G SH SKRYVALK+MYFGKRFYGF++EAQMEP++ESE+FKAL + RL
Sbjct: 70 RRRRVRKGDKNSIPSHLISKRYVALKIMYFGKRFYGFSAEAQMEPSIESEVFKALERTRL 129
Query: 122 LVGDKKESQYSRCGRTDKGVSSVGQ-------------------------VIALYLRSNL 156
LVGDKK+S YSRCGRTDKGVSS GQ VIAL+LRS L
Sbjct: 130 LVGDKKDSCYSRCGRTDKGVSSTGQFKNQFLIVLMFFQNPVMGAFPNVYKVIALFLRSRL 189
Query: 157 KISGANT-----GSSGEIVEEQHEGEIDYVRVLNRVLPNDIRILGWCPAPVDFHARFSCL 211
K ++ G +GE E DYVRVLNR LP+DIR++GW PAP+DFHARFSC
Sbjct: 190 KSPPGDSKAQVNGRTGE------RPEYDYVRVLNRALPDDIRVIGWSPAPIDFHARFSCY 243
Query: 212 SREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMDATNVHNYRRHITMFEIFPTDVR 271
+REYKYFFW++ LN+ AM+ AG K IGEHDFRNFCKMD NVH Y R +T FE+ P
Sbjct: 244 AREYKYFFWRQNLNLSAMDFAGKKFIGEHDFRNFCKMDVANVHCYTRRVTFFEVSPCQNS 303
Query: 272 YGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSS 331
+ G+QL +RGSAFLWHQ+RCMVAVLF++G+G+ES +VID LLDT KTPRKPQY+++S
Sbjct: 304 HEGDQLCTFTMRGSAFLWHQIRCMVAVLFMIGQGVESVDVIDTLLDTKKTPRKPQYLLAS 363
Query: 332 EVPLVLQSCEFEDIKFMCSSDAGEALRIHLVNECQTFQLQAAVFHEALLNCVPLLHDQS 390
E+PLVL++CEFE++ F+CS A E+LR H NE T+QL++ ++ EAL NC+PL ++ S
Sbjct: 364 EIPLVLRTCEFENVDFICSPGAAESLRSHFKNESLTYQLESVIYQEALRNCLPLSNNAS 422
>M8A7J5_TRIUA (tr|M8A7J5) tRNA pseudouridine synthase 3 OS=Triticum urartu
GN=TRIUR3_00522 PE=4 SV=1
Length = 462
Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust.
Identities = 232/427 (54%), Positives = 283/427 (66%), Gaps = 37/427 (8%)
Query: 11 IATLQARVKELEAENAKLL----------------SQLADSHIHEMEK--KLHVSGEKNT 52
+A L+ R+ ELE EN +L S LA+S ++ K K H S +
Sbjct: 16 VAALRLRILELERENQRLAQIVSTCSCSSKEGNIPSSLAESRDQQVLKNVKSHESRTSDH 75
Query: 53 G-SIKGN-----RKSEEKIEKMTGYNTRFMSHHSKRYVALKVMYFGKRFYGFASEAQMEP 106
G ++KG K K K TG +SH KR +ALK+MYFG+RFYGFASEA EP
Sbjct: 76 GCNVKGEGHDDLSKIRRKHSKRTGRQQGNVSHCQKRLIALKIMYFGQRFYGFASEAHTEP 135
Query: 107 TVESEIFKALAKIRLLVGDKKESQYSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSS 166
TVESEIFKA+ + RLLVG +++S YSRCGRTDKGVS+ GQVI+LYLRSNLK +G N
Sbjct: 136 TVESEIFKAIERARLLVGSREDSCYSRCGRTDKGVSATGQVISLYLRSNLKDAGEN---- 191
Query: 167 GEIVEEQHEGEIDYVRVLNRVLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNI 226
I+ E+ EIDYV VLNR LP DIR++GWCP DF ARFSCL REYKY FWK GL++
Sbjct: 192 --ILGER--SEIDYVSVLNRNLPRDIRVIGWCPVAADFLARFSCLGREYKYLFWKRGLDV 247
Query: 227 PAMESAGIKLIGEHDFRNFCKMDATNVHNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSA 286
M+ A K IGEHDFRNFCKMDA NV NY+R+IT F I D R ++LW + IRGSA
Sbjct: 248 SKMQKAAFKFIGEHDFRNFCKMDAANVSNYKRYITDFNISACDQRSNHDELWSMNIRGSA 307
Query: 287 FLWHQVRCMVAVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIK 346
FLWHQVRCM AVLF VG+GLESP V+D LLD KTPRKPQY M+ E+PL+L+SC F+ +
Sbjct: 308 FLWHQVRCMAAVLFFVGQGLESPCVVDSLLDITKTPRKPQYTMAPELPLILRSCLFDGVS 367
Query: 347 FMCSSDAGEALRIHLVNECQTFQLQAAVFHEALLNCVPLLHDQSLPPSRGTTKKKASYVP 406
FMCSSDA +AL HL +E + LQAA+F EA L C+ + L KKK ++P
Sbjct: 368 FMCSSDANQALIEHLKDEHHQYMLQAAIFDEA-LTCLSIPEPNPLE----YPKKKRKHIP 422
Query: 407 LMSRPTE 413
L+SR E
Sbjct: 423 LLSREAE 429
>I1H501_BRADI (tr|I1H501) tRNA pseudouridine synthase OS=Brachypodium distachyon
GN=BRADI1G61057 PE=3 SV=1
Length = 492
Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust.
Identities = 213/339 (62%), Positives = 255/339 (75%), Gaps = 13/339 (3%)
Query: 85 ALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLVGDKKESQYSRCGRTDKGVSSV 144
A + F RFYGFASEA EPTVESEIFK L + RLLVG +KES YSRCGRTDKGVS+
Sbjct: 159 AFSSLPFLFRFYGFASEAHTEPTVESEIFKVLERARLLVGSRKESCYSRCGRTDKGVSAT 218
Query: 145 GQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDYVRVLNRVLPNDIRILGWCPAPVDF 204
GQVI+LYLRSNLK G N +++E+ EIDYV+VLNR+LP DIR++GWCP DF
Sbjct: 219 GQVISLYLRSNLKDPGGN------VLDER--SEIDYVKVLNRMLPRDIRVIGWCPVAADF 270
Query: 205 HARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMDATNVHNYRRHITMFE 264
ARFSCL REYKY FWK GL++P M+ A K IGEHDFRNFCKMDA NV NYRRHIT F+
Sbjct: 271 LARFSCLGREYKYLFWKGGLDVPKMQKAASKFIGEHDFRNFCKMDAANVSNYRRHITDFD 330
Query: 265 IFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLESPNVIDMLLDTNKTPRK 324
I D R ++LW + I+GSAFLWHQVRCMVAVLFL+G+GLESP V+D LLD +TPRK
Sbjct: 331 ISAYDERSNNDELWAMNIKGSAFLWHQVRCMVAVLFLIGQGLESPCVVDSLLDITRTPRK 390
Query: 325 PQYIMSSEVPLVLQSCEFEDIKFMCSSDAGEALRIHLVNECQTFQLQAAVFHEALLNCVP 384
PQY M+ E+PL+L+SC+F+ + FM SSDA +AL HL +E + LQAA+FHEA L+C+P
Sbjct: 391 PQYTMAPELPLILRSCKFDKVSFMSSSDASQALIEHLKDEHHQYMLQAAIFHEA-LSCLP 449
Query: 385 LLHDQSLPPSRGTTKKKASYVPLMSRPTEPSYEERRAKL 423
L P KK+ +++PLMSR TEPSYEER AKL
Sbjct: 450 ---SPDLNPFESHQKKR-NHIPLMSRQTEPSYEERIAKL 484
>M8AR27_AEGTA (tr|M8AR27) tRNA pseudouridine synthase 3 OS=Aegilops tauschii
GN=F775_03068 PE=4 SV=1
Length = 704
Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust.
Identities = 231/427 (54%), Positives = 284/427 (66%), Gaps = 37/427 (8%)
Query: 11 IATLQARVKELEAENAKLL----------------SQLADSHIHEMEK--KLHVSGEKNT 52
+A L+ R+ ELE EN +L S LA+S +++K K H S +
Sbjct: 16 VAALRLRILELERENQRLAQIVSTCSCSSKEDNIPSSLAESCDQQVQKNVKSHESRTSDH 75
Query: 53 G-SIKGN-----RKSEEKIEKMTGYNTRFMSHHSKRYVALKVMYFGKRFYGFASEAQMEP 106
G ++KG K K K TG+ +SH KR +ALK+MYFG+RFYGFASEA EP
Sbjct: 76 GCNVKGEGHDDLSKIRRKHSKRTGHQVGNVSHCQKRLIALKIMYFGQRFYGFASEAHTEP 135
Query: 107 TVESEIFKALAKIRLLVGDKKESQYSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSS 166
TVESEIFKA+ + RLLVG +++S YSRCGRTDKGVS+ GQVI+LYLRSNLK +G N
Sbjct: 136 TVESEIFKAIERARLLVGSREDSCYSRCGRTDKGVSATGQVISLYLRSNLKDAGEN---- 191
Query: 167 GEIVEEQHEGEIDYVRVLNRVLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNI 226
I+ E+ EIDYV VLNR LP DIR++GWCP DF ARFSCL REYKY FWK L++
Sbjct: 192 --ILGER--SEIDYVSVLNRNLPRDIRVIGWCPVAADFLARFSCLGREYKYLFWKRALDV 247
Query: 227 PAMESAGIKLIGEHDFRNFCKMDATNVHNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSA 286
M+ A K IGEHDFRNFCKMDA NV NY+R+IT F I D R ++LW + IRGSA
Sbjct: 248 SKMQKAAFKFIGEHDFRNFCKMDAANVSNYKRYITDFNISACDQRSNHDELWSMNIRGSA 307
Query: 287 FLWHQVRCMVAVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIK 346
FLWHQVRCM AVLF VG+GLESP V+D LLD KTPRKPQY M+ E+PL+L+SC F+ +
Sbjct: 308 FLWHQVRCMAAVLFFVGQGLESPCVVDSLLDITKTPRKPQYTMAPELPLILRSCLFDGVS 367
Query: 347 FMCSSDAGEALRIHLVNECQTFQLQAAVFHEALLNCVPLLHDQSLPPSRGTTKKKASYVP 406
FMCSSDA +AL HL +E + LQAA+F EA L C+ + P KKK ++P
Sbjct: 368 FMCSSDASQALIEHLKDEHHQYMLQAAIFDEA-LTCLSIPE----PNPLEHPKKKRKHIP 422
Query: 407 LMSRPTE 413
L+SR E
Sbjct: 423 LLSREAE 429
>A2XHE2_ORYSI (tr|A2XHE2) tRNA pseudouridine synthase OS=Oryza sativa subsp.
indica GN=OsI_11824 PE=2 SV=1
Length = 403
Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust.
Identities = 215/419 (51%), Positives = 271/419 (64%), Gaps = 40/419 (9%)
Query: 11 IATLQARVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRKSEEKIEK--M 68
+A L+ RV+ELE EN +L + + S + S+ +++ +K K
Sbjct: 19 VAALRLRVQELERENQRLGKIASRCTCGSSKDDSAASSPVVSESLSSSKQEPQKNVKSHC 78
Query: 69 TGYNTRFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLVGDKKE 128
G +SH KR +ALK+MYFG+RFYGFASEA EPTVESEIFKAL + +LLVG +KE
Sbjct: 79 RGCQVGVVSHCPKRLIALKIMYFGQRFYGFASEAHTEPTVESEIFKALERAKLLVGSRKE 138
Query: 129 SQYSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDYVRVLNRVL 188
S YSRCGRTDKGVS+ GQVI+L+LRSN+K + ++D VL
Sbjct: 139 SCYSRCGRTDKGVSATGQVISLFLRSNIK-----------------DAKLD-------VL 174
Query: 189 PNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKM 248
N DF ARFSCL REYKY FWK LNI M+ A +K IGEHD+RNFCKM
Sbjct: 175 DNK---------SGDFLARFSCLGREYKYLFWKGDLNISEMQKAALKFIGEHDYRNFCKM 225
Query: 249 DATNVHNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLES 308
DA NV NYRRHIT F I D R ++LW I I+GSAFLWHQVRCMVAVLFL+G+GLES
Sbjct: 226 DAANVSNYRRHITDFNISAYDQRSNYDELWAITIKGSAFLWHQVRCMVAVLFLIGQGLES 285
Query: 309 PNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAGEALRIHLVNECQTF 368
P ++D LLD KTPRKPQY M+SE+PL+L+SC F+++ FMCSS+A +AL HL +E +
Sbjct: 286 PCIVDSLLDITKTPRKPQYKMASEIPLILRSCLFDEVNFMCSSEASQALIEHLKDEYHQY 345
Query: 369 QLQAAVFHEALLNCVPLLHDQSLPPSRGTTKKKASYVPLMSRPTEPSYEERRAKLNSST 427
LQAA+F EA L+C+ P KK +++PLMSR TEPSYEER AK+ + +
Sbjct: 346 MLQAAIFCEA-LSCLCSPEPDPFEPRH----KKRNHIPLMSRQTEPSYEERIAKVKTKS 399
>B9F8Q5_ORYSJ (tr|B9F8Q5) tRNA pseudouridine synthase OS=Oryza sativa subsp.
japonica GN=OsJ_11064 PE=2 SV=1
Length = 403
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 214/419 (51%), Positives = 271/419 (64%), Gaps = 40/419 (9%)
Query: 11 IATLQARVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRKSEEKIEK--M 68
+A L+ RV+ELE EN +L + + S + S+ +++ +K K
Sbjct: 19 VAALRLRVQELERENQRLGKIASRCTCGSSKDDSAASSPVVSESLSSSKQEPQKNVKSHC 78
Query: 69 TGYNTRFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLVGDKKE 128
G +SH KR +ALK+MYFG+RFYGFASEA EPTVESEIFKAL + +LLVG +KE
Sbjct: 79 RGCQVGVVSHCPKRLIALKIMYFGQRFYGFASEAHTEPTVESEIFKALERAKLLVGSRKE 138
Query: 129 SQYSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDYVRVLNRVL 188
S YSRCGRTDKGVS+ GQVI+L+LRSN+K + ++D VL
Sbjct: 139 SCYSRCGRTDKGVSATGQVISLFLRSNIK-----------------DAKLD-------VL 174
Query: 189 PNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKM 248
N DF ARFSCL REYKY FWK LNI M+ A +K IGEHD+RNFCKM
Sbjct: 175 DNK---------SGDFLARFSCLGREYKYLFWKGDLNISEMQKAALKFIGEHDYRNFCKM 225
Query: 249 DATNVHNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLES 308
DA NV NYRRHIT F I D R ++LW I I+GSAFLWHQVRCMVAVLFL+G+GLE+
Sbjct: 226 DAANVSNYRRHITDFNISAYDQRSNYDELWAITIKGSAFLWHQVRCMVAVLFLIGQGLET 285
Query: 309 PNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAGEALRIHLVNECQTF 368
P ++D LLD KTPRKPQY M+SE+PL+L+SC F+++ FMCSS+A +AL HL +E +
Sbjct: 286 PCIVDSLLDITKTPRKPQYKMASEIPLILRSCLFDEVNFMCSSEASQALIEHLKDEYHQY 345
Query: 369 QLQAAVFHEALLNCVPLLHDQSLPPSRGTTKKKASYVPLMSRPTEPSYEERRAKLNSST 427
LQAA+F EA L+C+ P KK +++PLMSR TEPSYEER AK+ + +
Sbjct: 346 MLQAAIFCEA-LSCLCSPEPDPFEPRH----KKRNHIPLMSRQTEPSYEERIAKVKTKS 399
>Q75M65_ORYSJ (tr|Q75M65) tRNA pseudouridine synthase OS=Oryza sativa subsp.
japonica GN=OSJNBa0011H24.20 PE=3 SV=1
Length = 411
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 206/405 (50%), Positives = 260/405 (64%), Gaps = 40/405 (9%)
Query: 11 IATLQARVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRKSEEKIEK--M 68
+A L+ RV+ELE EN +L + + S + S+ +++ +K K
Sbjct: 19 VAALRLRVQELERENQRLGKIASRCTCGSSKDDSAASSPVVSESLSSSKQEPQKNVKSHC 78
Query: 69 TGYNTRFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLVGDKKE 128
G +SH KR +ALK+MYFG+RFYGFASEA EPTVESEIFKAL + +LLVG +KE
Sbjct: 79 RGCQVGVVSHCPKRLIALKIMYFGQRFYGFASEAHTEPTVESEIFKALERAKLLVGSRKE 138
Query: 129 SQYSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDYVRVLNRVL 188
S YSRCGRTDKGVS+ GQVI+L+LRSN+K + ++D VL
Sbjct: 139 SCYSRCGRTDKGVSATGQVISLFLRSNIK-----------------DAKLD-------VL 174
Query: 189 PNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKM 248
N DF ARFSCL REYKY FWK LNI M+ A +K IGEHD+RNFCKM
Sbjct: 175 DNK---------SGDFLARFSCLGREYKYLFWKGDLNISEMQKAALKFIGEHDYRNFCKM 225
Query: 249 DATNVHNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLES 308
DA NV NYRRHIT F I D R ++LW I I+GSAFLWHQVRCMVAVLFL+G+GLE+
Sbjct: 226 DAANVSNYRRHITDFNISAYDQRSNYDELWAITIKGSAFLWHQVRCMVAVLFLIGQGLET 285
Query: 309 PNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAGEALRIHLVNECQTF 368
P ++D LLD KTPRKPQY M+SE+PL+L+SC F+++ FMCSS+A +AL HL +E +
Sbjct: 286 PCIVDSLLDITKTPRKPQYKMASEIPLILRSCLFDEVNFMCSSEASQALIEHLKDEYHQY 345
Query: 369 QLQAAVFHEALLNCVPLLHDQSLPPSRGTTKKKASYVPLMSRPTE 413
LQAA+F EA L+C+ P KK +++PLMSR TE
Sbjct: 346 MLQAAIFCEA-LSCLCSPEPDPFEPRH----KKRNHIPLMSRQTE 385
>D8SR09_SELML (tr|D8SR09) tRNA pseudouridine synthase OS=Selaginella
moellendorffii GN=SELMODRAFT_181988 PE=3 SV=1
Length = 372
Score = 349 bits (895), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 177/358 (49%), Positives = 227/358 (63%), Gaps = 39/358 (10%)
Query: 9 DHIATLQARVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRKSEEKIEKM 68
+ +A L AR+K LE ENA L ++L+ H GE + K K+ + +K
Sbjct: 11 NDVAALSARIKALEVENANLTARLSQQH-----------GENQSLKSKRTHKNHKNHKKE 59
Query: 69 TGYNTRFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLVGDKKE 128
N + +R+VALK+MY G ++GFAS+ TVESEIF AL + L+VG +
Sbjct: 60 NQGNFK------RRFVALKIMYIGSCYHGFASQGCAFNTVESEIFAALQRTNLVVGSIAD 113
Query: 129 SQYSRCGRTDKGVSSVGQVIALYLRSNLK----ISGANTGSSGEIV-------------E 171
+ YSRCGRTD+GVS+ QVIALYLRS K + GS ++
Sbjct: 114 ANYSRCGRTDRGVSATAQVIALYLRSKKKALDDTEESGYGSKDRVIVARSSREEEEMFAA 173
Query: 172 EQHEGEIDYVRVLNRVLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMES 231
E + EIDYV LNR LP DIR+LGWCP P FHARFSCL REYKYFF +GLNI AM+
Sbjct: 174 ETDDDEIDYVSSLNRALPADIRVLGWCPVPPGFHARFSCLYREYKYFFIDDGLNIDAMKQ 233
Query: 232 AGIKLIGEHDFRNFCKMDATNVHNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQ 291
A +L+GEHDFRNFCKMDA N+HNY R I F+I P + LWV+ +RG+AFLWHQ
Sbjct: 234 ASQRLLGEHDFRNFCKMDADNIHNYTRQILAFDILPIE-----ECLWVMHVRGNAFLWHQ 288
Query: 292 VRCMVAVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMC 349
VRCM AVLF++G+G E+ +ID LLD +KT RKPQY+M+ E+PLVLQSC F+ ++F C
Sbjct: 289 VRCMAAVLFMIGRGHETLTIIDDLLDVDKTMRKPQYVMAPELPLVLQSCAFQGLRFYC 346
>M5VKQ3_PRUPE (tr|M5VKQ3) Uncharacterized protein OS=Prunus persica
GN=PRUPE_ppa009448mg PE=4 SV=1
Length = 292
Score = 340 bits (873), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 156/224 (69%), Positives = 182/224 (81%), Gaps = 1/224 (0%)
Query: 202 VDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMDATNVHNYRRHIT 261
V+ + FSCL REY Y FW E LN+ AMESAG K +GEHDFRNFCKMDA NVHNYRR +T
Sbjct: 66 VEASSLFSCLGREYYYLFWGENLNLLAMESAGRKFVGEHDFRNFCKMDALNVHNYRRKVT 125
Query: 262 MFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLESPNVIDMLLDTNKT 321
F I P DVR+ NQLW IKI+GSAFLWHQVRCMVAVLFL+G+G ESP+VID LLDT++
Sbjct: 126 SFAISPCDVRFDENQLWAIKIKGSAFLWHQVRCMVAVLFLIGQGHESPDVIDALLDTDRI 185
Query: 322 PRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAGEALRIHLVNECQTFQLQAAVFHEALLN 381
PRKPQY M+ E+PLVLQSCEFE + F CSSD+G+ALR+HL NECQ + L+AA+FHEAL +
Sbjct: 186 PRKPQYSMAPEIPLVLQSCEFEGLNFTCSSDSGQALRMHLANECQNYHLEAAIFHEALQS 245
Query: 382 CVPLLHDQSLPPSRGTTKKKASYVPLMSRPTEPSYEERRAKLNS 425
C P+ DQ GT KKK+S+VPLMSRPTEPSYEERRAKLN+
Sbjct: 246 CSPIEKDQR-SLDNGTVKKKSSHVPLMSRPTEPSYEERRAKLNT 288
>M0W4C7_HORVD (tr|M0W4C7) tRNA pseudouridine synthase OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 274
Score = 338 bits (868), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 167/283 (59%), Positives = 199/283 (70%), Gaps = 15/283 (5%)
Query: 146 QVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDYVRVLNRVLPNDIRILGWCPAPVDFH 205
QVI+LYLRSN K +G N GE EIDYV VLNR LP DIR++GWCP DF
Sbjct: 2 QVISLYLRSNFKEAGGNV--LGE------RSEIDYVSVLNRNLPRDIRVIGWCPVSADFL 53
Query: 206 ARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMDATNVHNYRRHITMFEI 265
ARFSCL REYKY FWK GL++ M+ A K IGEHD RNFCKMDA NV NY+R IT F I
Sbjct: 54 ARFSCLGREYKYLFWKGGLDVSKMQEAAFKFIGEHDLRNFCKMDAANVSNYKRCITDFTI 113
Query: 266 FPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLESPNVIDMLLDTNKTPRKP 325
D R ++LW + IRGSAFLWHQVRCMVAVLFLVG+GLESP V+D LLD KTPRKP
Sbjct: 114 SACDQRSNHDELWSMNIRGSAFLWHQVRCMVAVLFLVGQGLESPCVVDSLLDITKTPRKP 173
Query: 326 QYIMSSEVPLVLQSCEFEDIKFMCSSDAGEALRIHLVNECQTFQLQAAVFHEALLN-CVP 384
QY M+ E+PL+L+SC F+ + FMCSSDA +AL HL +E + LQAA+F EAL C+P
Sbjct: 174 QYTMAPELPLILRSCLFDRVNFMCSSDASQALIEHLKDEYHQYMLQAAIFDEALTCLCIP 233
Query: 385 LLHDQSLPPSRGTTKKKASYVPLMSRPTEPSYEERRAKLNSST 427
+ P KKK ++PL+SR TEPSYEERRA++ + +
Sbjct: 234 EANPSESP------KKKRKHIPLLSRETEPSYEERRARVKAKS 270
>M1D2V1_SOLTU (tr|M1D2V1) tRNA pseudouridine synthase OS=Solanum tuberosum
GN=PGSC0003DMG400031154 PE=3 SV=1
Length = 230
Score = 327 bits (838), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 152/231 (65%), Positives = 185/231 (80%), Gaps = 5/231 (2%)
Query: 195 LGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMDATNVH 254
+GW P PV F ARFSCLSR YKYFFW+ LNI AM++A K +GEHDFRNFCKMDA NVH
Sbjct: 1 MGWSPIPVGFSARFSCLSRVYKYFFWQGNLNITAMQTAAEKFLGEHDFRNFCKMDADNVH 60
Query: 255 NYRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLESPNVIDM 314
NYRRHI FEI P + +QL ++KI+GSAFLWHQVRCMVAVLFL+G+GLESPNVID+
Sbjct: 61 NYRRHIISFEILPFNESDKADQLMIMKIKGSAFLWHQVRCMVAVLFLIGQGLESPNVIDL 120
Query: 315 LLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAGEALRIHLVNECQTFQLQAAV 374
LLD +TPRKPQ+ M+ E+PLVLQSCEFE +KF+CSSD +AL HL EC++++LQ+A+
Sbjct: 121 LLDIERTPRKPQFPMAPEIPLVLQSCEFEGLKFICSSDTNQALNEHLERECRSYKLQSAI 180
Query: 375 FHEALLN--CVPLLHDQSLPPSRGTTKKKASYVPLMSRPTEPSYEERRAKL 423
FHEALLN C+ + ++ S S T KK AS++PL+SRPTEPSYEERR KL
Sbjct: 181 FHEALLNSSCIEIDNNIS---SDHTKKKGASHIPLLSRPTEPSYEERRKKL 228
>A9TEF9_PHYPA (tr|A9TEF9) Predicted protein OS=Physcomitrella patens subsp.
patens GN=PHYPADRAFT_91697 PE=3 SV=1
Length = 680
Score = 325 bits (834), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 193/467 (41%), Positives = 260/467 (55%), Gaps = 97/467 (20%)
Query: 27 KLLSQLADSHIHEMEKKL-HVSGEKNTGSIKGNRKSEEKIEKMTGYNTRFMSHHSKRYVA 85
K LS+ S I E KL V G++N K +EK MSH+ R+VA
Sbjct: 174 KCLSENPVSDIPSTESKLPKVKGKRN--------KKRNAMEKS-------MSHYCSRHVA 218
Query: 86 LKVMYFGKRFYGFASEAQMEPTVE---------SEIFKALAKIRLLVGDKKESQYSRCGR 136
LKVMY G + GFAS+A TVE +E+F AL + R++ G E++Y+RCGR
Sbjct: 219 LKVMYLGTGYQGFASQAGSPNTVEVQNSLIGGQTELFAALHRTRMITGTAAEAKYTRCGR 278
Query: 137 TDKGVSSVGQVIALYLRSNLK----------------------IS---------GANTGS 165
TDKGVS+VGQV+ALYLRS ++ IS G+ T +
Sbjct: 279 TDKGVSAVGQVVALYLRSKIQPRRQENIVSTGDAEEELNSKSSISAQGVPEGEDGSFTKN 338
Query: 166 SGEIV---------------------EEQ-----HEGEIDYVRVLNRVLPNDIRILGWCP 199
SG ++ EEQ +E E DYV +LNR LP DIR+LGWCP
Sbjct: 339 SGFVMDLSCIDHSGDRVAMARASRKEEEQFARTAYEDEYDYVGILNRALPEDIRVLGWCP 398
Query: 200 APVDFHARFSCLSREYKYFFWKEGLNIPA-------------MESAGIKLIGEHDFRNFC 246
P F+ARFSC+ REYKYFF +GLNI M+ A + GEHDF NFC
Sbjct: 399 VPPGFNARFSCMYREYKYFFIDDGLNIDVWTLIYAFNRQYNVMKFACKQFEGEHDFTNFC 458
Query: 247 KMDATNVHNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGL 306
KMDA NVHNY R IT F+I P++ ++GG +W++ ++G+AFLWHQVRCM AVLF+VG G
Sbjct: 459 KMDAANVHNYMRTITHFDIIPSNEKWGGKSVWIMNVKGTAFLWHQVRCMAAVLFMVGAGH 518
Query: 307 ESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAGEALRIHLVNECQ 366
E P +++ LLD K RKPQYIM+SE PL+L C ++ + F C DA + LR+HL + Q
Sbjct: 519 EKPTIVEELLDVKKIVRKPQYIMASETPLLLFHCGYQGLSFRCHPDAVKRLRLHLESLLQ 578
Query: 367 TFQLQAAVFHEALLNCVPLLHDQSLPPSRGTTKKKASYVPLMSRPTE 413
T + +++ + LL +P + P + +K +VP++ RPTE
Sbjct: 579 TSIVNSSLLLQGLLE-LPSPAKKPTQPG-DSQSRKGLHVPMLKRPTE 623
>M0W4C6_HORVD (tr|M0W4C6) tRNA pseudouridine synthase OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 288
Score = 322 bits (824), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 153/253 (60%), Positives = 183/253 (72%), Gaps = 7/253 (2%)
Query: 176 GEIDYVRVLNRVLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIK 235
EIDYV VLNR LP DIR++GWCP DF ARFSCL REYKY FWK GL++ M+ A K
Sbjct: 38 SEIDYVSVLNRNLPRDIRVIGWCPVSADFLARFSCLGREYKYLFWKGGLDVSKMQEAAFK 97
Query: 236 LIGEHDFRNFCKMDATNVHNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCM 295
IGEHD RNFCKMDA NV NY+R IT F I D R ++LW + IRGSAFLWHQVRCM
Sbjct: 98 FIGEHDLRNFCKMDAANVSNYKRCITDFTISACDQRSNHDELWSMNIRGSAFLWHQVRCM 157
Query: 296 VAVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAGE 355
VAVLFLVG+GLESP V+D LLD KTPRKPQY M+ E+PL+L+SC F+ + FMCSSDA +
Sbjct: 158 VAVLFLVGQGLESPCVVDSLLDITKTPRKPQYTMAPELPLILRSCLFDRVNFMCSSDASQ 217
Query: 356 ALRIHLVNECQTFQLQAAVFHEALLN-CVPLLHDQSLPPSRGTTKKKASYVPLMSRPTEP 414
AL HL +E + LQAA+F EAL C+P + P KKK ++PL+SR TEP
Sbjct: 218 ALIEHLKDEYHQYMLQAAIFDEALTCLCIPEANPSESP------KKKRKHIPLLSRETEP 271
Query: 415 SYEERRAKLNSST 427
SYEERRA++ + +
Sbjct: 272 SYEERRARVKAKS 284
>B4FJQ8_MAIZE (tr|B4FJQ8) tRNA pseudouridine synthase OS=Zea mays PE=2 SV=1
Length = 257
Score = 321 bits (822), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 152/250 (60%), Positives = 185/250 (74%), Gaps = 5/250 (2%)
Query: 176 GEIDYVRVLNRVLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIK 235
EIDYV+VLNR+LP DIR+LGWCP P DFHARF+CLSREYKY FWK L+I M+ A K
Sbjct: 6 SEIDYVKVLNRILPRDIRVLGWCPVPADFHARFTCLSREYKYLFWKGDLDILEMQKAASK 65
Query: 236 LIGEHDFRNFCKMDATNVHNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCM 295
IGEHDFRNFCKMDA NV NYRRHIT F I D R ++L + I+GSAFLWHQVRCM
Sbjct: 66 FIGEHDFRNFCKMDAANVSNYRRHITEFTISACDRRSNNDELCSMTIKGSAFLWHQVRCM 125
Query: 296 VAVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAGE 355
VAVLFL+G+GLESP+V+D LLD KT RKPQY M+ E+PL+LQSC F+ FMCS+DA
Sbjct: 126 VAVLFLIGQGLESPSVVDSLLDIMKTSRKPQYKMAPELPLILQSCLFDKANFMCSADASR 185
Query: 356 ALRIHLVNECQTFQLQAAVFHEALLNCVPLLHDQSLPPSRGTTKKKASYVPLMSRPTEPS 415
+L HL +E + LQA +FH A +C+P P S T +KK +++PL+SR TEPS
Sbjct: 186 SLTEHLNDEYRHHMLQAEIFHIA-SSCLPFPE----PNSSETPQKKRNHIPLLSRETEPS 240
Query: 416 YEERRAKLNS 425
YEER +K+ +
Sbjct: 241 YEERISKVKA 250
>H0YR86_TAEGU (tr|H0YR86) tRNA pseudouridine synthase OS=Taeniopygia guttata
GN=PUS3 PE=3 SV=1
Length = 437
Score = 281 bits (719), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 166/414 (40%), Positives = 234/414 (56%), Gaps = 37/414 (8%)
Query: 1 MATQLSDVDHIATLQARVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRK 60
MA + + DH L+ RV+ELE E +L +L + +K+ E KG ++
Sbjct: 1 MAEESTATDHEQLLR-RVQELEVEVKRLQEKLQE------DKEGAGKREAPPAPGKGRKR 53
Query: 61 SEEKIEKMTGYNTRFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIR 120
+ + + HS+R+VAL++ Y G + GFAS+ T+E ++F+AL K R
Sbjct: 54 QQRPFD---------FAAHSRRHVALRIAYLGWGYQGFASQENTPNTIEEKLFEALKKTR 104
Query: 121 LLVGDKKESQYSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDY 180
L V D++ S Y RCGRTDKGVS+ GQVI+L LRS+L G GE +E E+ Y
Sbjct: 105 L-VDDRQTSNYHRCGRTDKGVSAFGQVISLDLRSSLPEGQQLNGHGGEGQQE----ELRY 159
Query: 181 VRVLNRVLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEH 240
+LNRVLP DIR+L W P +F ARFSCLSR Y+YFF L++ M++A + +G H
Sbjct: 160 THILNRVLPPDIRVLAWAPVGPEFSARFSCLSRTYRYFFPCAQLDVALMDTAAQRYVGTH 219
Query: 241 DFRNFCKMDATN-VHNYRRHITMFEIFPTDVRYGGN-------QLWVIKIRGSAFLWHQV 292
DFRN CKMD N V N++R I + T V GG QL ++ G AFL+HQV
Sbjct: 220 DFRNLCKMDVANGVLNFQRTILRARV--TRVSGGGEARPRDPFQLCQFEVTGQAFLYHQV 277
Query: 293 RCMVAVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSD 352
RCM+AVLFL+G+G+ESP+VID LL+ K PRKPQY M+ E PLVL CEF D++++ +
Sbjct: 278 RCMMAVLFLIGQGMESPDVIDELLNVEKNPRKPQYSMAVEFPLVLYDCEFPDLQWLYDPE 337
Query: 353 AGEALRIHLVNECQTFQLQAAVFHEALLNCVPLLHDQSLPPSRGTTKKKASYVP 406
HL + ++ V + L + P + G + ++S VP
Sbjct: 338 VQGFNVTHLQQLWASHAVKTHVLRDMLAGL------DAAPMATGKGRGRSSLVP 385
>F1P3X5_CHICK (tr|F1P3X5) tRNA pseudouridine synthase OS=Gallus gallus GN=PUS3
PE=3 SV=2
Length = 459
Score = 280 bits (717), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 169/436 (38%), Positives = 238/436 (54%), Gaps = 54/436 (12%)
Query: 17 RVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRKSEEKIEKMTGYNTRFM 76
RV++LE E +L +L++ + K+T S +RKS+++ ++ +
Sbjct: 16 RVRDLEEEVKQLQEKLSEGK--------EGTAVKDTPST--SRKSKKQQQRPFDF----- 60
Query: 77 SHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLVGDKKESQYSRCGR 136
S H +R+VAL++ Y G + GFAS+ T+E ++F+AL K RL V D++ S Y RCGR
Sbjct: 61 SAHGRRHVALRIAYLGWGYQGFASQENTSNTIEEKLFEALKKTRL-VDDRQTSNYHRCGR 119
Query: 137 TDKGVSSVGQVIALYLRSNL----KISGANTGSSGEIVEEQHEGEIDYVRVLNRVLPNDI 192
TDKGVS+ GQVI+L LRSNL K++G S G+ + E E+ Y +LNRVLP DI
Sbjct: 120 TDKGVSAFGQVISLDLRSNLSEEKKLNGCTGDSEGK--SSKSEEELRYTHILNRVLPPDI 177
Query: 193 RILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMDATN 252
R+L W P DF ARFSCL R Y+YFF L++ M +A + +G HDFRN CKMD N
Sbjct: 178 RVLAWAPVEPDFSARFSCLKRTYRYFFPCADLDVALMHTAAQRYVGTHDFRNLCKMDVAN 237
Query: 253 -VHNYRRHITMFEIFPTDVRYGGNQ--------LWVIKIRGSAFLWHQVRCMVAVLFLVG 303
V N++R I ++ D GG + L ++ G AFL+HQVRCM+A+LFL+G
Sbjct: 238 GVINFQRTILSAQVTWAD---GGAESGLRDPFRLCQFEVTGQAFLYHQVRCMMAILFLIG 294
Query: 304 KGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAGEALRIHLVN 363
+ +E P +ID LLD K PRKPQY M+ E PLVL CEFE+I++ + E HL
Sbjct: 295 QRMEGPEIIDELLDVEKNPRKPQYSMAVEFPLVLYDCEFENIQWHYDREVQEFNVTHLQQ 354
Query: 364 ECQTFQLQAAVFHEALL--------------NCVPLLHDQSLPPSRGTTK------KKAS 403
++ ++ V H L N P+L PP + +
Sbjct: 355 LWASYAVKTQVLHSMLRGLDTAPMAAGKDPGNAAPVLWGDLKPPVHNQASSFVEGVRARA 414
Query: 404 YVPLMSRPTEPSYEER 419
Y PL+ RP E R
Sbjct: 415 YKPLLERPRCEGLESR 430
>R0LIM0_ANAPL (tr|R0LIM0) tRNA pseudouridine synthase 3 (Fragment) OS=Anas
platyrhynchos GN=Anapl_11928 PE=4 SV=1
Length = 430
Score = 278 bits (711), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 170/439 (38%), Positives = 236/439 (53%), Gaps = 53/439 (12%)
Query: 14 LQARVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRKSEEKIEKMTGYNT 73
L RV++LE E +L +L E K + + + +RK +++ + Y
Sbjct: 3 LLKRVQDLEEEVKRLQEKL-------FEGKESTVAKDTVSASRKHRKQQQRPFDFSAY-- 53
Query: 74 RFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLVGDKKESQYSR 133
S+R+VALK+ Y G + GFAS+ T+E ++F+AL K RL V D++ S Y R
Sbjct: 54 ------SRRHVALKIAYLGWGYQGFASQENTSNTIEEKLFEALKKTRL-VDDRQTSNYHR 106
Query: 134 CGRTDKGVSSVGQVIALYLRSNL----KISGANTGSSGEIVEEQHEGEIDYVRVLNRVLP 189
CGRTDKGVS+ GQVI+L LRSNL K++G S G+ + E E+ Y +LNRVLP
Sbjct: 107 CGRTDKGVSAFGQVISLDLRSNLSEGKKLNGCKGNSEGK--NSKSEEELCYTHILNRVLP 164
Query: 190 NDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMD 249
DIR+L W P DF ARFSCL R Y+YFF L++ M +A + +G HDFRN CKMD
Sbjct: 165 PDIRVLAWSPVEPDFSARFSCLRRTYRYFFPCADLDVALMHAAAQRYVGTHDFRNLCKMD 224
Query: 250 ATN-VHNYRRHITMFEIFPTDVRYGGN-------QLWVIKIRGSAFLWHQVRCMVAVLFL 301
N V N++R I ++ D G +L ++ G AFL+HQVRCM+A+LFL
Sbjct: 225 VANGVINFQRTILSAQVMWVD--RGAETGLRDPFRLCQFEVTGQAFLYHQVRCMMAILFL 282
Query: 302 VGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAGEALRIHL 361
+G+ +ESP +ID LLD K PRKPQY M+ E PLVL CEFE+I+++ + E HL
Sbjct: 283 IGQRMESPEIIDELLDVEKNPRKPQYSMAVEFPLVLYDCEFENIQWIYDREVQEFNVTHL 342
Query: 362 VNECQTFQLQAAVFHEAL--LNCVP-------------LLHDQSLPPSRGTTK------K 400
+ ++ V H L L+ P +L PP + K
Sbjct: 343 QQLWASHAVKTQVLHNMLQGLDAAPVAAGKGPGDVTATVLWGDLKPPVQNQASSFMEGVK 402
Query: 401 KASYVPLMSRPTEPSYEER 419
+Y PL+ RP E R
Sbjct: 403 ARTYKPLLERPKCEGLESR 421
>M0W4C4_HORVD (tr|M0W4C4) tRNA pseudouridine synthase OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 270
Score = 276 bits (707), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 132/222 (59%), Positives = 160/222 (72%), Gaps = 7/222 (3%)
Query: 207 RFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMDATNVHNYRRHITMFEIF 266
RFSCL REYKY FWK GL++ M+ A K IGEHD RNFCKMDA NV NY+R IT F I
Sbjct: 51 RFSCLGREYKYLFWKGGLDVSKMQEAAFKFIGEHDLRNFCKMDAANVSNYKRCITDFTIS 110
Query: 267 PTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLESPNVIDMLLDTNKTPRKPQ 326
D R ++LW + IRGSAFLWHQVRCMVAVLFLVG+GLESP V+D LLD KTPRKPQ
Sbjct: 111 ACDQRSNHDELWSMNIRGSAFLWHQVRCMVAVLFLVGQGLESPCVVDSLLDITKTPRKPQ 170
Query: 327 YIMSSEVPLVLQSCEFEDIKFMCSSDAGEALRIHLVNECQTFQLQAAVFHEALLN-CVPL 385
Y M+ E+PL+L+SC F+ + FMCSSDA +AL HL +E + LQAA+F EAL C+P
Sbjct: 171 YTMAPELPLILRSCLFDRVNFMCSSDASQALIEHLKDEYHQYMLQAAIFDEALTCLCIPE 230
Query: 386 LHDQSLPPSRGTTKKKASYVPLMSRPTEPSYEERRAKLNSST 427
+ P KKK ++PL+SR TEPSYEERRA++ + +
Sbjct: 231 ANPSESP------KKKRKHIPLLSRETEPSYEERRARVKAKS 266
>G1MQ86_MELGA (tr|G1MQ86) tRNA pseudouridine synthase OS=Meleagris gallopavo
GN=LOC100543853 PE=3 SV=1
Length = 394
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 154/381 (40%), Positives = 221/381 (58%), Gaps = 32/381 (8%)
Query: 17 RVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRKSEEKIEKMTGYNTRFM 76
RV++LE E +L +L++ K ++K + K ++ ++
Sbjct: 16 RVQDLEEEVKQLQEKLSEG--------------KEGTAVKDTPSTSRKSKQQRPFD---F 58
Query: 77 SHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLVGDKKESQYSRCGR 136
S H +R+VAL++ Y G + GFAS+ T+E ++F+AL K RL V ++ S Y RCGR
Sbjct: 59 SAHGRRHVALRIAYLGWGYQGFASQENTSNTIEEKLFEALKKTRL-VDSRQTSNYHRCGR 117
Query: 137 TDKGVSSVGQVIALYLRSNL----KISGANTGSSGEIVEEQHEGEIDYVRVLNRVLPNDI 192
TDKGVS+ GQVI+L LRSNL K++G S G+ + E E+ Y +LNRVLP DI
Sbjct: 118 TDKGVSAFGQVISLDLRSNLSKEKKLNGCTGDSEGK--SSKSEEELRYTHILNRVLPPDI 175
Query: 193 RILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMDATN 252
R+L W P DF ARFSCL R Y+YFF L++ M++A + +G HDFRN CKMD N
Sbjct: 176 RVLAWAPVEPDFSARFSCLKRTYRYFFPCADLDVALMQAAAQRYVGTHDFRNLCKMDVAN 235
Query: 253 -VHNYRRHITMFEIFPTDVRYGGN-----QLWVIKIRGSAFLWHQVRCMVAVLFLVGKGL 306
V N++R I ++ D G +L ++ G AFL+HQVRCM+A+LFL+G+ +
Sbjct: 236 GVINFQRTILSAQVTWVDGGAEGGLRDPFRLCQFEVTGQAFLYHQVRCMMAILFLIGQRM 295
Query: 307 ESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAGEALRIHLVNECQ 366
E P +ID LLD K PRKPQY M+ E PLVL CEFE+I++ + E HL
Sbjct: 296 EGPEIIDELLDVEKNPRKPQYSMAVEFPLVLYDCEFENIQWHYDQEVQEFNITHLQQLWA 355
Query: 367 TFQLQAAVFHEAL--LNCVPL 385
++ ++ V H+ L L+ P+
Sbjct: 356 SYAVKTQVLHDMLRGLDAAPV 376
>L9LEM0_TUPCH (tr|L9LEM0) tRNA pseudouridine synthase OS=Tupaia chinensis
GN=TREES_T100008315 PE=3 SV=1
Length = 479
Score = 275 bits (703), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 175/447 (39%), Positives = 230/447 (51%), Gaps = 51/447 (11%)
Query: 1 MATQLSDVDHIATLQARVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRK 60
MA D L RV+ELE E +L + A + +K G +G+ K R
Sbjct: 1 MAENDGDRSQTEKLLERVRELEREVCRLRKERASN------QKDPAVGRSASGAGKAKRA 54
Query: 61 SEEKIEKMTGYNTRFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIR 120
+ S H +R+VAL++ Y G + GFAS+ TVE ++F+AL K R
Sbjct: 55 FD-------------FSAHGRRHVALRIAYLGWGYQGFASQENTSNTVEEQLFEALTKTR 101
Query: 121 LLVGDKKESQYSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEG-EID 179
L V ++ S Y RCGRTD+GVS+ GQVI+L LRS L GS VE EI
Sbjct: 102 L-VESRQTSNYHRCGRTDRGVSAFGQVISLDLRSQLP---RGRGSEDVHVEGTDTAQEIR 157
Query: 180 YVRVLNRVLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGE 239
Y +LNRVLP DIR+L W P F ARFSCL R Y+YFF + L++ +M SA K +G
Sbjct: 158 YTHILNRVLPPDIRVLAWAPVEPGFSARFSCLERTYRYFFPRADLDVESMNSAAQKYVGT 217
Query: 240 HDFRNFCKMDATN-VHNYRRHITMFEIFPTDVRYGGN------QLWVIKIRGSAFLWHQV 292
HDFRNFCKMD N V N++R + ++ G + QL ++ G AFL+HQV
Sbjct: 218 HDFRNFCKMDVANGVVNFQRTVLSAQVQRVGQSPGEHTQQAPFQLCQFQVTGQAFLYHQV 277
Query: 293 RCMVAVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSD 352
RCM+AVLFL+G+GLE P VID LLD P+KPQY M+ E PLVL C FE+I+++ +
Sbjct: 278 RCMMAVLFLIGQGLERPEVIDELLDIESNPQKPQYSMAVEFPLVLYDCTFENIRWVYDRE 337
Query: 353 AGEALRIHLVNECQTFQLQAAVFHEALLNCVPL-LHDQSLPPSRGTTK------------ 399
A E HL +QA + + L P+ + S P G T
Sbjct: 338 AQELNITHLQQLWAKHAVQAHMLYSLLQGLDPVPVPCASAPEPGGVTGWEDARPSVVKQT 397
Query: 400 -------KKASYVPLMSRPTEPSYEER 419
K +Y PLM RP E R
Sbjct: 398 SAFVEGVKTRTYKPLMDRPKCQGLESR 424
>K3WGL0_PYTUL (tr|K3WGL0) Uncharacterized protein OS=Pythium ultimum
GN=PYU1_G004091 PE=3 SV=1
Length = 944
Score = 273 bits (699), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 146/325 (44%), Positives = 194/325 (59%), Gaps = 25/325 (7%)
Query: 75 FMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLVGDKKESQYSRC 134
MS++ KR VA+K +Y G+RF GFA + ME TVE + AL + +L + D ++S YSRC
Sbjct: 509 LMSNYVKRSVAVKFLYLGERFAGFARQEHMEDTVERYLIDALVRTKL-IEDIEQSAYSRC 567
Query: 135 GRTDKGVSSVGQVIALYLRSNLKISG----------ANTGS-------SGEIVEEQHEGE 177
GRTD+GVS+ GQVI + LRSNL IS GS SGEI + E
Sbjct: 568 GRTDRGVSAFGQVIGVTLRSNLPISAKLVDFASIDEVRPGSKFRIELPSGEI---KTITE 624
Query: 178 IDYVRVLNRVLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLI 237
+DY +NR LP DIR+ P+P F ARF C +R Y+YFF K+ +++ M A L+
Sbjct: 625 VDYPTHINRALPEDIRVYSVVPSPTGFSARFDCTARMYRYFFLKKDMDVVKMREAAQALV 684
Query: 238 GEHDFRNFCKMDATNVHNYRRHITMFEIFPTDVRYGGN---QLWVIKIRGSAFLWHQVRC 294
G HDFRNFC++D TN H + R I FEI + N Q++ +I G AFLWHQVRC
Sbjct: 685 GVHDFRNFCRID-TNCHTFERSIKSFEIVACETEVATNPTDQMYRFEIHGRAFLWHQVRC 743
Query: 295 MVAVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAG 354
MV VLFL+G G E P++I LLD TPRKPQY M+S+ PLVL C F++I+F S A
Sbjct: 744 MVQVLFLIGSGKEEPDLILRLLDIATTPRKPQYDMASDAPLVLHDCYFDNIQFDYSPLAL 803
Query: 355 EALRIHLVNECQTFQLQAAVFHEAL 379
+ L+ + + ++AAV L
Sbjct: 804 YQVHAQLLQQWEQLAIKAAVLRSNL 828
>F1QBS4_DANRE (tr|F1QBS4) tRNA pseudouridine synthase OS=Danio rerio GN=pus3 PE=2
SV=1
Length = 460
Score = 272 bits (695), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 163/421 (38%), Positives = 235/421 (55%), Gaps = 38/421 (9%)
Query: 14 LQARVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRKSEEKIEKMTGYNT 73
L+ RVK LE E +L +QL + EK+ G+R+ ++++EK +
Sbjct: 6 LRVRVKALEEELERLKAQLRAE-----------TEEKSQTPESGSRQKKQRVEKPFDF-- 52
Query: 74 RFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLVGDKKESQYSR 133
S H +R+VAL++ Y G ++ GFA + + TVE+ +F+AL K +L + D++ S Y R
Sbjct: 53 ---SAHPRRHVALRLAYLGWQYQGFAVQENTDNTVEARLFEALLKTKL-IQDRQTSCYHR 108
Query: 134 CGRTDKGVSSVGQVIALYLRSNLKISG--ANTGSSGEIVEEQHEGEIDYVRVLNRVLPND 191
CGRTDKGVS+ QVI++ LRS G + ++ + E+ YV++LNRVLP D
Sbjct: 109 CGRTDKGVSAFSQVISIDLRSTQYGGGLGVTVPADVDVKGKTSADELPYVKILNRVLPQD 168
Query: 192 IRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMDAT 251
IRIL W P F ARF C SR Y+Y+F + L++ M A + G HDFRN CKMD
Sbjct: 169 IRILQWAPVESGFSARFDCQSRTYRYYFPRGDLDLELMAEAAKRYEGTHDFRNLCKMDVG 228
Query: 252 N-VHNYRRHITMFEIFPTD-----VRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKG 305
N V ++R I + P V +QL+V +++G AFL+HQVRCM+A+L L+G+
Sbjct: 229 NGVLQFQRTILSASVQPAQLPHPSVHNDPHQLFVFQVKGLAFLYHQVRCMMALLLLIGQK 288
Query: 306 LESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAGEALRIHLVNEC 365
LE+P VID LLD K PRKPQY M+ + PLVL C FE + + ++ IH++N
Sbjct: 289 LEAPEVIDQLLDVEKNPRKPQYSMAVDYPLVLYDCHFEGVNWRNETEE----EIHILNTF 344
Query: 366 QTFQLQAAVFHEALLNCVPLLHDQSLPPS-------RGTTKKKASYVPLMSRPTEPSYEE 418
+Q AV + LL + L + S G+ +KK Y PL+SRP S E
Sbjct: 345 HQHWVQNAVKTQILLGMIQGLQNTSTEMGSLQCWLMEGSRQKK--YQPLLSRPRCESLES 402
Query: 419 R 419
R
Sbjct: 403 R 403
>H3ASP7_LATCH (tr|H3ASP7) tRNA pseudouridine synthase OS=Latimeria chalumnae PE=3
SV=1
Length = 496
Score = 271 bits (694), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 162/440 (36%), Positives = 234/440 (53%), Gaps = 48/440 (10%)
Query: 17 RVKELEAENAKLLSQLADSHIHEMEKKLHVSGE------------KNTGSIKGNRKSEEK 64
R+K+L E +LL +L + + +KL G + ++ G K ++
Sbjct: 5 RLKDLSKE--QLLRRLKELEKEMLRQKLAQEGGAGPLLAEGAGPGREGAAVAGRSKKHQR 62
Query: 65 IEKMTGYNTRFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLVG 124
+ YN KR+VAL++ Y G + GFAS+ T+E +F+AL K RL V
Sbjct: 63 PFDFSAYN--------KRHVALRIAYLGWGYQGFASQENTSNTIEERLFEALTKTRL-VE 113
Query: 125 DKKESQYSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEI--VEEQHEGEIDYVR 182
++ + Y RCGRTDKGVS+ GQVI+L LRSNL G+ VE + EI Y
Sbjct: 114 SRQTACYHRCGRTDKGVSAFGQVISLDLRSNLSRGKGVKVREGQTADVEGRQTEEIRYTH 173
Query: 183 VLNRVLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDF 242
+LNRVLP DIR+L W P DF ARFSC R Y YFF + L++ M++A + +G HDF
Sbjct: 174 ILNRVLPEDIRVLAWAPVEPDFSARFSCRQRTYHYFFPRGDLDVSLMDAAAQRYVGTHDF 233
Query: 243 RNFCKMDATN-VHNYRRHITMFEIFPTDVRYGGNQ----LWVIKIRGSAFLWHQVRCMVA 297
RN CKMD N V N++R I + PT+ R G + ++ + G AFL+HQVRCMVA
Sbjct: 234 RNLCKMDVANGVFNFQRTILSAAVRPTEERAGAQEDAFAMYEFVVTGLAFLYHQVRCMVA 293
Query: 298 VLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAGEAL 357
VLFL+G+ LE P VID LL+ + PRKPQY M+ E PLVL C FE+++++ D E
Sbjct: 294 VLFLIGQRLERPEVIDELLNAEENPRKPQYSMAVEFPLVLYDCAFENLEWIYDPDVQEFN 353
Query: 358 RIHLVNECQTFQLQAAVFHEALLNCVPLLHDQSLPPSRGTTKKKA--------------- 402
HL ++ +++ + + L + ++ P+ +++K +
Sbjct: 354 VNHLQQMWTSYAIKSQMLYSMLQSLDSGNLEKGEEPNESSSRKTSCPAVRNQASSLLEGV 413
Query: 403 ---SYVPLMSRPTEPSYEER 419
+Y PLM RP E R
Sbjct: 414 RTRTYKPLMGRPKCEGLESR 433
>Q7ZW97_DANRE (tr|Q7ZW97) tRNA pseudouridine synthase OS=Danio rerio GN=pus3 PE=2
SV=1
Length = 460
Score = 270 bits (690), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 163/421 (38%), Positives = 235/421 (55%), Gaps = 38/421 (9%)
Query: 14 LQARVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRKSEEKIEKMTGYNT 73
L+ RVK LE E +L +QL + EK+ S G+R+ ++++EK +
Sbjct: 6 LRVRVKALEEELERLKAQLRAE-----------TEEKSQTSESGSRQKKQRVEKPFDF-- 52
Query: 74 RFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLVGDKKESQYSR 133
S H +R+VAL++ Y G ++ GFA + + TVE+ +F+AL K +L + D++ S Y R
Sbjct: 53 ---SAHPRRHVALRLAYLGWQYQGFAVQENTDNTVEARLFEALLKTKL-IQDRQTSCYHR 108
Query: 134 CGRTDKGVSSVGQVIALYLRSNLKISG--ANTGSSGEIVEEQHEGEIDYVRVLNRVLPND 191
CGRTDKGVS+ QVI++ LRS G + ++ + E+ YV++LNRVLP+D
Sbjct: 109 CGRTDKGVSAFSQVISIDLRSTQYGGGLGVTVPADVDVKGKTSADELPYVKILNRVLPHD 168
Query: 192 IRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMDAT 251
IRIL W P F ARF C SR Y+Y+F + L++ M A + G HDFRN CKMD
Sbjct: 169 IRILQWAPVESGFSARFDCQSRTYRYYFPRGDLDLELMAEAAKRYEGTHDFRNLCKMDVG 228
Query: 252 N-VHNYRRHITMFEIFPTD-----VRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKG 305
N V ++R I + P V +QL+V +++G A L+HQVRCM+A+L L+G+
Sbjct: 229 NGVLQFQRTILSASVQPAQLPHPSVHNDPHQLFVFQVKGLALLYHQVRCMMALLLLIGQK 288
Query: 306 LESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAGEALRIHLVNEC 365
LE+P VID LLD K PRKPQY M+ + PLVL C FE + + + IH++N
Sbjct: 289 LEAPEVIDQLLDVEKNPRKPQYSMAVDYPLVLYDCHFEGVNWRNEIEE----EIHILNTF 344
Query: 366 QTFQLQAAVFHEALLNCVPLLHDQSLPPS-------RGTTKKKASYVPLMSRPTEPSYEE 418
+Q AV + LL + L + S G+ +KK Y PL+SRP S E
Sbjct: 345 HQHWVQNAVKTQILLGMIQGLQNTSTEMGSLQCWLMEGSRQKK--YQPLLSRPRCESLES 402
Query: 419 R 419
R
Sbjct: 403 R 403
>F1N5P3_BOVIN (tr|F1N5P3) tRNA pseudouridine synthase OS=Bos taurus GN=PUS3 PE=3
SV=1
Length = 481
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 180/459 (39%), Positives = 239/459 (52%), Gaps = 81/459 (17%)
Query: 6 SDVDHIAT--LQARVKELEAENAKLLSQLA---DSHIHEMEKKLHVSGEKNTGSIKGNRK 60
+DVD I T L RV+ELE E +L + A DS+I E N+ G K
Sbjct: 4 NDVDRIQTEKLLKRVQELEQEVKRLKKEQANNKDSNIRE-----------NSSGAGGKPK 52
Query: 61 SEEKIEKMTGYNTRFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIR 120
++ S H +R+VALK+ Y G + GFAS+ T+E ++F+AL K R
Sbjct: 53 R--------AFD---FSAHGQRHVALKIAYLGWGYQGFASQENTSNTIEEKLFEALTKTR 101
Query: 121 LLVGDKKESQYSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHE----- 175
L V +++ S Y RCGRTDKGVS+ GQVI+L LRS++ G E ++E
Sbjct: 102 L-VENRQTSNYHRCGRTDKGVSAFGQVISLDLRSHIP-----KGRDSEHFNLKNEVNDVA 155
Query: 176 GEIDYVRVLNRVLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIK 235
EI Y +LNRVLP DIR+L W P F ARFSCL R Y+YFF + L+I M A K
Sbjct: 156 TEIRYTHILNRVLPPDIRVLAWAPVETSFSARFSCLERTYRYFFPRANLDIVTMNYAAQK 215
Query: 236 LIGEHDFRNFCKMDATN-VHNYRRHITMFEIFPTDVRYGGN----------QLWVIKIRG 284
+G HDFRN CKMD N V N++R I ++ R G N QL ++ G
Sbjct: 216 YVGTHDFRNLCKMDVANGVINFQRTILSAQV----QRVGQNLGEEGWQEPFQLCQFEVTG 271
Query: 285 SAFLWHQVRCMVAVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFED 344
AFL+HQVRCM+AVLFL+G+G+E P VID LL+ K P+KPQY M+ E PLVL C+FE+
Sbjct: 272 QAFLYHQVRCMMAVLFLIGQGMEKPEVIDELLNIEKNPQKPQYSMAVEFPLVLYDCKFEN 331
Query: 345 IKFMCSSDAGEALRIHLVNECQTFQLQAAVFHEALLNCVPLLHDQSLPPSRG-------- 396
IK++ + E HL Q AV + L + + L +LP G
Sbjct: 332 IKWIYDREVQEFNVTHL----QQLWANHAVKTQMLYSMLQGLDSVALPCGTGPKMDGMIE 387
Query: 397 -------TTKKKASYV---------PLMSRPTEPSYEER 419
TK+ +++V PLM RP E R
Sbjct: 388 WRNVKPSVTKQTSAFVEGVKMRTYKPLMDRPKCQGLESR 426
>F7GU24_CALJA (tr|F7GU24) tRNA pseudouridine synthase OS=Callithrix jacchus
GN=PUS3 PE=3 SV=1
Length = 477
Score = 269 bits (688), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 158/372 (42%), Positives = 213/372 (57%), Gaps = 39/372 (10%)
Query: 1 MATQLSDVDHIATLQARVKELEAENAKLLSQLA----DSHIHEMEKKLHVSGEKNTGSIK 56
MA +D + L RV+ELE E +L + A DS+I E N+G+ K
Sbjct: 1 MADNDADRNQTEKLLRRVQELEHEVQRLKKEQAKNKEDSNIRE-----------NSGAGK 49
Query: 57 GNRKSEEKIEKMTGYNTRFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKAL 116
R + S H +R+VALK+ Y G + GFAS+ T+E ++F+AL
Sbjct: 50 TKRAFD-------------FSTHGRRHVALKIAYMGWGYQGFASQENTNNTIEEKLFEAL 96
Query: 117 AKIRLLVGDKKESQYSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEG 176
K RL V ++ S Y RCGRTDKGVS+ GQVI+L LRS S V+E+
Sbjct: 97 TKTRL-VESRQTSNYHRCGRTDKGVSAFGQVISLDLRSQFP---RRRDSEDFNVKEEAAE 152
Query: 177 EIDYVRVLNRVLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKL 236
EI Y +LNRVLP DIRIL W P F ARFSCL R Y+YFF + L+I M+ A K
Sbjct: 153 EIRYTHILNRVLPPDIRILAWAPVEPSFSARFSCLERTYRYFFPRADLDIVTMDYAAQKY 212
Query: 237 IGEHDFRNFCKMDATN-VHNYRRHITMFEIFPT-----DVRYG-GNQLWVIKIRGSAFLW 289
+G HDFRN CKMD N V N++R I ++ P + R+ QL ++ G AFL+
Sbjct: 213 VGTHDFRNLCKMDVANGVINFQRTILSAQVQPVGQSPDEERWQVPFQLCQFEVTGQAFLY 272
Query: 290 HQVRCMVAVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMC 349
HQVRCM+A+LFL+G+G+E P +ID LL+ K P+KPQY M+ E PLVL C+FE+++++
Sbjct: 273 HQVRCMMAILFLIGQGMEKPEIIDELLNIEKNPQKPQYSMAVEFPLVLYDCKFENVEWIY 332
Query: 350 SSDAGEALRIHL 361
+A E HL
Sbjct: 333 DQEAQEFNITHL 344
>L8HSN9_BOSMU (tr|L8HSN9) tRNA pseudouridine synthase OS=Bos grunniens mutus
GN=M91_02460 PE=3 SV=1
Length = 481
Score = 269 bits (687), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 175/456 (38%), Positives = 236/456 (51%), Gaps = 75/456 (16%)
Query: 6 SDVDHIAT--LQARVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRKSEE 63
+DVD I T L RV+ELE E +L + A++ + + +G K +
Sbjct: 4 NDVDRIQTEKLLKRVQELEQEVKRLKKEQANNKNSNIRENSSGAGGKPKRAFD------- 56
Query: 64 KIEKMTGYNTRFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLV 123
S H +R+VALK+ Y G + GFAS+ T+E ++F+AL K RL V
Sbjct: 57 ------------FSAHGQRHVALKIAYLGWGYQGFASQENTSNTIEEKLFEALTKTRL-V 103
Query: 124 GDKKESQYSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHE-----GEI 178
+++ S Y RCGRTDKGVS+ GQVI+L LRS++ G E ++E EI
Sbjct: 104 ENRQTSNYHRCGRTDKGVSAFGQVISLDLRSHIP-----KGRDSEHFNLKNEVNDVATEI 158
Query: 179 DYVRVLNRVLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIG 238
Y +LNRVLP DIR+L W P F ARFSCL R Y+YFF + L+I M A K +G
Sbjct: 159 RYTHILNRVLPPDIRVLAWAPVETSFSARFSCLERTYRYFFPRANLDIVTMNYAAQKYVG 218
Query: 239 EHDFRNFCKMDATN-VHNYRRHITMFEIFPTDVRYGGN----------QLWVIKIRGSAF 287
HDFRN CKMD N V N++R I ++ R G N QL ++ G AF
Sbjct: 219 THDFRNLCKMDVANGVINFQRTILSAQV----QRVGQNLGEEGWQEPFQLCQFEVTGQAF 274
Query: 288 LWHQVRCMVAVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKF 347
L+HQVRCM+AVLFL+G+G+E P VID LL+ K P+KPQY M+ E PLVL C+FE+IK+
Sbjct: 275 LYHQVRCMMAVLFLIGQGMEKPEVIDELLNIEKNPQKPQYSMAVEFPLVLYDCKFENIKW 334
Query: 348 MCSSDAGEALRIHLVNECQTFQLQAAVFHEALLNCVPLLHDQSLPPSRG----------- 396
+ + E HL Q AV + L + + L +LP G
Sbjct: 335 IYDREVQEFNVTHL----QQLWANHAVKTQMLYSMLQGLDSVALPCGTGPKMDGMIEWRN 390
Query: 397 ----TTKKKASYV---------PLMSRPTEPSYEER 419
TK+ +++V PLM RP E R
Sbjct: 391 VKPSVTKQTSAFVEGVKMRTYKPLMDRPKCQGLESR 426
>G3HFK1_CRIGR (tr|G3HFK1) tRNA pseudouridine synthase OS=Cricetulus griseus
GN=I79_009360 PE=3 SV=1
Length = 480
Score = 268 bits (686), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 168/443 (37%), Positives = 226/443 (51%), Gaps = 51/443 (11%)
Query: 6 SDVDHIATLQARVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRKSEEKI 65
+D + I L RVKELE E +L + A+S K E + GS K R +
Sbjct: 5 TDRNQIEKLLNRVKELEQEVKRLKKEQANS------TKDSSIRENSLGSGKAKRAFD--- 55
Query: 66 EKMTGYNTRFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLVGD 125
S H +R+VALK+ Y G + GFAS+ T+E ++F+AL K RL V
Sbjct: 56 ----------FSAHGRRHVALKIAYLGWGYQGFASQENTSNTIEEKLFEALTKTRL-VES 104
Query: 126 KKESQYSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDYVRVLN 185
++ S Y RCGRTDKGVS+ GQVI+L LRS + S + + EI Y +LN
Sbjct: 105 RQTSNYHRCGRTDKGVSAFGQVISLDLRSQFPRGRDSDDSDLKDEADDVAKEIRYTHILN 164
Query: 186 RVLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNF 245
RVLP DIR+L W P F ARF+CL R Y+YFF + L+I M A K +G HDFRN
Sbjct: 165 RVLPADIRVLAWAPVEPGFSARFNCLERTYRYFFPRADLDIVTMNYAAQKYVGTHDFRNL 224
Query: 246 CKMDATN-VHNYRRHITMFEI------FPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAV 298
CKMD N V N++R I ++ + R QL ++ G AFL+HQVRCM+A+
Sbjct: 225 CKMDVANGVINFQRTILSAQVQLVTWSLGEERRQEPFQLCQFEVIGQAFLYHQVRCMMAI 284
Query: 299 LFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAGEALR 358
LFL+G+G+E P +ID LL+ K P+KPQY M+ E PLVL C+FE+ K++ + E
Sbjct: 285 LFLIGQGMEKPEIIDELLNIEKNPQKPQYSMAVEFPLVLYDCKFENTKWIYDHEVQEFNV 344
Query: 359 IHLVNECQTFQLQAAVFHEALL----------------------NCVPLLHDQSLPPSRG 396
HL C ++ + + L N P + QS G
Sbjct: 345 THLQQLCANHAVKTHMLYSKLQGLDSVMITCGAGTKMEEATEWRNIKPSVIKQSSAFVEG 404
Query: 397 TTKKKASYVPLMSRPTEPSYEER 419
K +Y PLM RP E R
Sbjct: 405 V--KTRTYKPLMDRPKCEGLESR 425
>G3VEE8_SARHA (tr|G3VEE8) tRNA pseudouridine synthase (Fragment) OS=Sarcophilus
harrisii GN=PUS3 PE=3 SV=1
Length = 484
Score = 268 bits (686), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 168/446 (37%), Positives = 230/446 (51%), Gaps = 54/446 (12%)
Query: 7 DVDHIATLQARVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRKSEEKIE 66
D + TL R++ELE E +L + AD KK ++ G+ +T K ++ E
Sbjct: 7 DTNQTETLLKRIQELEREVQRLQQEQAD-------KKTNIRGQSSTEVGKPKKRHER--- 56
Query: 67 KMTGYNTRFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLVGDK 126
+N S + +R+VAL++ Y G + GFAS+ T+E ++F+AL K RL V +
Sbjct: 57 ---AFN---FSAYGQRHVALRIAYLGWGYQGFASQENTNNTIEEKLFEALTKTRL-VESR 109
Query: 127 KESQYSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDYVRVLNR 186
+ S Y RCGRTDKGVS+ GQVI+L LRS L S S + EI Y +LNR
Sbjct: 110 QTSNYHRCGRTDKGVSAFGQVISLNLRSQLIGSKKPEDQSLKDSINDTVEEIRYTHILNR 169
Query: 187 VLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFC 246
VLP DIR+L W P F ARFSCL R Y+YFF L+I AM A K +G HDFRN C
Sbjct: 170 VLPPDIRVLAWAPVEPSFSARFSCLERTYRYFFPCADLDIEAMNDAAQKYVGTHDFRNLC 229
Query: 247 KMDATN-VHNYRRHITMFEIFPTDVR--------YGGNQLWVIKIRGSAFLWHQVRCMVA 297
KMD N V N++R I + +R QL ++ G AFL+HQVRCM+A
Sbjct: 230 KMDVANGVINFQRTILSANVQLVALRDLEEKLQQQEPFQLCQFEVIGQAFLYHQVRCMMA 289
Query: 298 VLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAGEAL 357
+LFL+G+ +E P +ID LL+ K P+KPQY M+ E PLVL C+FE+IK++ + E
Sbjct: 290 ILFLIGQRMEKPEIIDELLNIEKNPQKPQYSMAVEFPLVLHDCKFENIKWIYDQEVQEFN 349
Query: 358 RIHLVNECQTFQLQAAVFHEALLNCVPLLHDQSLPPSRGTTK------------------ 399
HL Q AV L + + L ++ P G+ +
Sbjct: 350 VTHL----QQLWANYAVKTHMLYSMLQGLDTAAISPGSGSKRNEVVQWKDVRPSVQKQIS 405
Query: 400 ------KKASYVPLMSRPTEPSYEER 419
K +Y PL+ RP E R
Sbjct: 406 AFVEGVKTRTYKPLLDRPRCEGLESR 431
>M3W3W9_FELCA (tr|M3W3W9) tRNA pseudouridine synthase OS=Felis catus GN=PUS3 PE=3
SV=1
Length = 480
Score = 268 bits (685), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 170/448 (37%), Positives = 237/448 (52%), Gaps = 60/448 (13%)
Query: 6 SDVDHIATLQ--ARVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRKSEE 63
SD+D T++ RV+ELE E +L + A++ K E + G+ K R +
Sbjct: 4 SDIDRTQTVKLLKRVQELEQEVQRLKKEQANN-------KDSTVRENSLGAGKAKRAFD- 55
Query: 64 KIEKMTGYNTRFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLV 123
S H +R+VALK+ Y G + GFAS+ T+E ++F+AL K RL V
Sbjct: 56 ------------FSAHGRRHVALKIAYLGWGYQGFASQENTNNTIEEKLFEALTKTRL-V 102
Query: 124 GDKKESQYSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDYVRV 183
++ S Y RCGRTDKGVS+ GQVI+L LRS+ A+ + + EI Y +
Sbjct: 103 ESRQTSNYHRCGRTDKGVSAFGQVISLDLRSHFPKDRASEDCNLKDEVSDAAKEIRYTHI 162
Query: 184 LNRVLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFR 243
LNRVLP DIR+L W P F ARFSCL R Y+YFF + L+I AM A K +G HDFR
Sbjct: 163 LNRVLPPDIRVLAWAPVEPSFSARFSCLERTYRYFFPRADLDIVAMNDAAQKYVGTHDFR 222
Query: 244 NFCKMDATN-VHNYRRHITMFEIFPTDVRYGGN-----------QLWVIKIRGSAFLWHQ 291
N CKMD N V N++R I V+ G QL ++ G AFL+HQ
Sbjct: 223 NLCKMDVANGVINFQR-----TILSAQVQLVGQSLDKERWQEPFQLCQFEVIGQAFLYHQ 277
Query: 292 VRCMVAVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSS 351
VRCM+A+LFL+G+G+E P +ID LL+ K P+KPQY M+ E PLVL C+FE+IK++
Sbjct: 278 VRCMMAILFLIGQGMEKPEIIDELLNIEKNPQKPQYSMAVEFPLVLYDCKFENIKWIYDR 337
Query: 352 DAGEALRIHLVNECQTFQLQAAVFHEAL--LNCVP-----------LLHDQSLPPS--RG 396
+ E HL ++ + + L L+CV ++ +++ PS +
Sbjct: 338 EVQEFNVTHLQQLWANHAVKTHMLYSMLQGLDCVAVPCGTGPEMDGMIEWRNVKPSVIKQ 397
Query: 397 TTK-----KKASYVPLMSRPTEPSYEER 419
T+ K +Y PLM RP E R
Sbjct: 398 TSAFVEGVKMRTYKPLMDRPKCQGLESR 425
>B0BN58_RAT (tr|B0BN58) tRNA pseudouridine synthase OS=Rattus norvegicus
GN=Pus3 PE=2 SV=1
Length = 479
Score = 268 bits (685), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 156/366 (42%), Positives = 212/366 (57%), Gaps = 27/366 (7%)
Query: 3 TQLSDVDHIATLQARVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRKSE 62
+ +D + I L +RVKELE E +L KK + K+T S++ N
Sbjct: 2 AETTDRNQIEKLLSRVKELEQEVERL-------------KKEQANNIKDT-SVRENSLGC 47
Query: 63 EKIEKMTGYNTRFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLL 122
K ++ + S H +R+VALK+ Y G + GFAS+ T+E ++F+AL K RL
Sbjct: 48 GKAKRAFDF-----SAHGRRHVALKIAYLGWGYQGFASQENTSNTIEEKLFEALIKTRL- 101
Query: 123 VGDKKESQYSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDYVR 182
V ++ S Y RCGRTDKGVS+ GQVI+L LRS S + S+ + + EI Y
Sbjct: 102 VESRQTSNYHRCGRTDKGVSAFGQVISLDLRSQFPRSRDSEDSNLKDGADDIAKEIRYAH 161
Query: 183 VLNRVLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDF 242
+LNRVLP DIR+L W PA F ARFSCL R Y+YFF L+I M A K +G HDF
Sbjct: 162 ILNRVLPADIRVLAWAPAEPSFSARFSCLERTYRYFFPCADLDIATMNYAAQKYVGTHDF 221
Query: 243 RNFCKMDATN-VHNYRRHI------TMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCM 295
RN CKMD N V N++R I T+ + + R G QL ++ G AFL+HQVRCM
Sbjct: 222 RNLCKMDVANGVTNFQRTILSAQVQTVAQSPGEEGRQGPFQLCQFEVIGQAFLYHQVRCM 281
Query: 296 VAVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAGE 355
+A+LFL+G+G+E P +ID LL+ K P+KPQY M+ E PLVL C+FE+ K++ + E
Sbjct: 282 MAILFLIGQGMEKPEIIDELLNIEKNPQKPQYSMAVEFPLVLYDCKFENTKWIYDHEVHE 341
Query: 356 ALRIHL 361
HL
Sbjct: 342 FNVTHL 347
>G3UUC1_MELGA (tr|G3UUC1) tRNA pseudouridine synthase (Fragment) OS=Meleagris
gallopavo GN=LOC100543853 PE=3 SV=1
Length = 371
Score = 267 bits (683), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 149/377 (39%), Positives = 215/377 (57%), Gaps = 40/377 (10%)
Query: 17 RVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRKSEEKIEKMTGYNTRFM 76
RV++LE E +L +L++ K ++K + K ++ ++
Sbjct: 12 RVQDLEEEVKQLQEKLSEG--------------KEGTAVKDTPSTSRKSKQQRPFD---F 54
Query: 77 SHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLVGDKKESQYSRCGR 136
S H +R+VAL++ Y G + GFAS+ T+E ++F+AL K RL V ++ S Y RCGR
Sbjct: 55 SAHGRRHVALRIAYLGWGYQGFASQENTSNTIEEKLFEALKKTRL-VDSRQTSNYHRCGR 113
Query: 137 TDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDYVRVLNRVLPNDIRILG 196
TDKGVS+ GQVI+L LRSNL ++ + E+ Y +LNRVLP DIR+L
Sbjct: 114 TDKGVSAFGQVISLDLRSNLS--------------KEKKEELRYTHILNRVLPPDIRVLA 159
Query: 197 WCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMDATN-VHN 255
W P DF ARFSCL R Y+YFF L++ M++A + +G HDFRN CKMD N V N
Sbjct: 160 WAPVEPDFSARFSCLKRTYRYFFPCADLDVALMQAAAQRYVGTHDFRNLCKMDVANGVIN 219
Query: 256 YRRHITMFEIFPTDVRYGGN-----QLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLESPN 310
++R I ++ D G +L ++ G AFL+HQVRCM+A+LFL+G+ +E P
Sbjct: 220 FQRTILSAQVTWVDGGAEGGLRDPFRLCQFEVTGQAFLYHQVRCMMAILFLIGQRMEGPE 279
Query: 311 VIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAGEALRIHLVNECQTFQL 370
+ID LLD K PRKPQY M+ E PLVL CEFE+I++ + E HL ++ +
Sbjct: 280 IIDELLDVEKNPRKPQYSMAVEFPLVLYDCEFENIQWHYDQEVQEFNITHLQQLWASYAV 339
Query: 371 QAAVFHEAL--LNCVPL 385
+ V H+ L L+ P+
Sbjct: 340 KTQVLHDMLRGLDAAPV 356
>K7G5U2_PELSI (tr|K7G5U2) tRNA pseudouridine synthase OS=Pelodiscus sinensis
GN=PUS3 PE=3 SV=1
Length = 493
Score = 266 bits (681), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 163/418 (38%), Positives = 234/418 (55%), Gaps = 38/418 (9%)
Query: 1 MATQLSDVDHIATLQARVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRK 60
MA + D L RV+ELEAE +L +L +E K + + ++ +K
Sbjct: 1 MAELGVEKDQEEGLLKRVQELEAEVKRLQEKL-------LEGKEGPELKSSPSALGRTKK 53
Query: 61 SEEKIEKMTGYNTRFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIR 120
+++ + Y+ +++VALK+ Y G + GFAS+ T+E ++F+AL+K R
Sbjct: 54 RQQRPFDFSAYD--------RKHVALKIAYLGWGYQGFASQENTNNTIEEKLFEALSKTR 105
Query: 121 LLVGDKKESQYSRCGRTDKGVSSVGQVIALYLRSNL----KISGANTGSSGEIVEEQHEG 176
L V +++ S Y RCGRTDKGVS+ GQVI+L LRS+L K++G +G + +E
Sbjct: 106 L-VDNRQTSNYHRCGRTDKGVSAFGQVISLDLRSDLSEGKKVNGHESGLKDKTSSSANE- 163
Query: 177 EIDYVRVLNRVLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKL 236
I Y +LNRVLP DIR+L W P F ARFSCL R Y+YFF + L++ M++A K
Sbjct: 164 -IRYTHILNRVLPPDIRVLAWAPVEPSFSARFSCLKRTYRYFFPRADLDVTLMDAAAQKY 222
Query: 237 IGEHDFRNFCKMDATN-VHNYRRHITMFEIFPTDVRYGGN-------QLWVIKIRGSAFL 288
+G HDFRN CKMD N V N++R I ++ D GG QL+ ++ G AFL
Sbjct: 223 VGTHDFRNLCKMDVANGVTNFQRTILTAQVQLVD--RGGETGLQDPFQLYQFEVTGQAFL 280
Query: 289 WHQVRCMVAVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFM 348
+HQVRCM+A+LFL+G+ E +ID LLD K P+KPQY M+ E PLVL CEF++I+++
Sbjct: 281 YHQVRCMMAILFLIGQRREKLEIIDELLDVEKNPQKPQYSMAVEFPLVLYDCEFDNIQWL 340
Query: 349 CSSDAGEALRIHLVNECQTFQLQAAVFHEALLNCVPLLHDQSLPPSRGTTKKKASYVP 406
+ E HL Q AV L N + L ++ S GT +K VP
Sbjct: 341 YDREVQEFNVTHL----QQLWANHAVKTHILYNMLQGLESAAI--STGTGPEKNRMVP 392
>G7PPM7_MACFA (tr|G7PPM7) tRNA pseudouridine synthase OS=Macaca fascicularis
GN=EGM_06391 PE=3 SV=1
Length = 480
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 153/368 (41%), Positives = 211/368 (57%), Gaps = 37/368 (10%)
Query: 6 SDVDHIATLQARVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRKSEEKI 65
+D + L RV+ELE E +L ++ A + K +I+ N K
Sbjct: 5 TDRNQTEKLLKRVQELEQEVQRLRTEQAKN--------------KEDSNIRKNSSGAGKT 50
Query: 66 EKMTGYNTRFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLVGD 125
++ + S H +R+VAL++ Y G + GFAS+ T+E ++F+AL+K RL V
Sbjct: 51 KRAFDF-----SAHGRRHVALRIAYMGWGYQGFASQENTNNTIEEKLFEALSKTRL-VES 104
Query: 126 KKESQYSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEG-----EIDY 180
++ S Y RCGRTDKGVS+ GQVI+L LRS G E + E EI Y
Sbjct: 105 RQTSNYHRCGRTDKGVSAFGQVISLDLRSQFP-----RGRDSEDFNVKEEANATAEEIRY 159
Query: 181 VRVLNRVLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEH 240
+LNRVLP DIRIL W P F ARFSCL R Y+YFF + L+I AM+ A K +G H
Sbjct: 160 THILNRVLPPDIRILAWAPVEPSFSARFSCLERTYRYFFPRADLDIVAMDYAAQKYVGTH 219
Query: 241 DFRNFCKMDATN-VHNYRRHITMFEI-----FPTDVRYGGN-QLWVIKIRGSAFLWHQVR 293
DFRN CKMD N V N++R I ++ P + R+ QL ++ G AFL+HQVR
Sbjct: 220 DFRNLCKMDVANGVINFQRTILSAQVRLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQVR 279
Query: 294 CMVAVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDA 353
CM+A+LFL+G+G+E P +ID LL+ K P+KPQY M+ E PLVL C+FE++K++ +A
Sbjct: 280 CMMAILFLIGQGMEKPEIIDELLNIEKNPQKPQYSMAVEFPLVLYDCKFENVKWIYDQEA 339
Query: 354 GEALRIHL 361
E HL
Sbjct: 340 QEFNITHL 347
>G7NCX7_MACMU (tr|G7NCX7) tRNA pseudouridine synthase OS=Macaca mulatta GN=PUS3
PE=2 SV=1
Length = 480
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 153/368 (41%), Positives = 211/368 (57%), Gaps = 37/368 (10%)
Query: 6 SDVDHIATLQARVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRKSEEKI 65
+D + L RV+ELE E +L ++ A + K +I+ N K
Sbjct: 5 TDRNQTEKLLKRVQELEQEVQRLRTEQAKN--------------KEDSNIRKNSSGAGKT 50
Query: 66 EKMTGYNTRFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLVGD 125
++ + S H +R+VAL++ Y G + GFAS+ T+E ++F+AL+K RL V
Sbjct: 51 KRAFDF-----SAHGRRHVALRIAYMGWGYQGFASQENTNNTIEEKLFEALSKTRL-VES 104
Query: 126 KKESQYSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEG-----EIDY 180
++ S Y RCGRTDKGVS+ GQVI+L LRS G E + E EI Y
Sbjct: 105 RQTSNYHRCGRTDKGVSAFGQVISLDLRSQFP-----RGRDSEDFNVKEEANATAEEIRY 159
Query: 181 VRVLNRVLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEH 240
+LNRVLP DIRIL W P F ARFSCL R Y+YFF + L+I AM+ A K +G H
Sbjct: 160 THILNRVLPPDIRILAWAPVEPSFSARFSCLERTYRYFFPRADLDIVAMDYAAQKYVGTH 219
Query: 241 DFRNFCKMDATN-VHNYRRHITMFEI-----FPTDVRYGGN-QLWVIKIRGSAFLWHQVR 293
DFRN CKMD N V N++R I ++ P + R+ QL ++ G AFL+HQVR
Sbjct: 220 DFRNLCKMDVANGVINFQRTILSAQVRLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQVR 279
Query: 294 CMVAVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDA 353
CM+A+LFL+G+G+E P +ID LL+ K P+KPQY M+ E PLVL C+FE++K++ +A
Sbjct: 280 CMMAILFLIGQGMEKPEIIDELLNIEKNPQKPQYSMAVEFPLVLYDCKFENVKWIYDQEA 339
Query: 354 GEALRIHL 361
E HL
Sbjct: 340 QEFNITHL 347
>F7AR65_MACMU (tr|F7AR65) tRNA pseudouridine synthase OS=Macaca mulatta GN=PUS3
PE=3 SV=1
Length = 480
Score = 266 bits (680), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 153/368 (41%), Positives = 211/368 (57%), Gaps = 37/368 (10%)
Query: 6 SDVDHIATLQARVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRKSEEKI 65
+D + L RV+ELE E +L ++ A + K +I+ N K
Sbjct: 5 TDRNQTEKLLKRVQELEQEVQRLRTEQAKN--------------KEDSNIRKNSSGAGKT 50
Query: 66 EKMTGYNTRFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLVGD 125
++ + S H +R+VAL++ Y G + GFAS+ T+E ++F+AL+K RL V
Sbjct: 51 KRAFDF-----SAHGRRHVALRIAYMGWGYQGFASQENTNNTIEEKLFEALSKTRL-VES 104
Query: 126 KKESQYSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEG-----EIDY 180
++ S Y RCGRTDKGVS+ GQVI+L LRS G E + E EI Y
Sbjct: 105 RQTSNYHRCGRTDKGVSAFGQVISLDLRSQFP-----RGRDSEDFNVKEEANATAEEIRY 159
Query: 181 VRVLNRVLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEH 240
+LNRVLP DIRIL W P F ARFSCL R Y+YFF + L+I AM+ A K +G H
Sbjct: 160 THILNRVLPPDIRILAWAPVEPSFSARFSCLERTYRYFFPRADLDIVAMDYAAQKYVGTH 219
Query: 241 DFRNFCKMDATN-VHNYRRHITMFEI-----FPTDVRYGGN-QLWVIKIRGSAFLWHQVR 293
DFRN CKMD N V N++R I ++ P + R+ QL ++ G AFL+HQVR
Sbjct: 220 DFRNLCKMDVANGVINFQRTILSAQVRLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQVR 279
Query: 294 CMVAVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDA 353
CM+A+LFL+G+G+E P +ID LL+ K P+KPQY M+ E PLVL C+FE++K++ +A
Sbjct: 280 CMMAILFLIGQGMEKPEIIDELLNIEKNPQKPQYSMAVEFPLVLYDCKFENVKWIYDQEA 339
Query: 354 GEALRIHL 361
E HL
Sbjct: 340 QEFNITHL 347
>H2Q528_PANTR (tr|H2Q528) tRNA pseudouridine synthase OS=Pan troglodytes GN=PUS3
PE=2 SV=1
Length = 481
Score = 266 bits (679), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 167/447 (37%), Positives = 235/447 (52%), Gaps = 49/447 (10%)
Query: 1 MATQLSDVDHIATLQARVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRK 60
MA +D + L RV+ELE E +L + A + K +I+ N
Sbjct: 1 MADNDTDRNQTEKLLKRVRELEQEVQRLKKEQAKN--------------KEDSNIRENSS 46
Query: 61 SEEKIEKMTGYNTRFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIR 120
K ++ + S H +R+VAL++ Y G + GFAS+ T+E ++F+AL K R
Sbjct: 47 GAGKTKRAFDF-----SAHGRRHVALRIAYMGWGYQGFASQENTNNTIEEKLFEALTKTR 101
Query: 121 LLVGDKKESQYSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDY 180
L V ++ S Y RCGRTDKGVS+ GQVI+L LRS+ + + + EI Y
Sbjct: 102 L-VESRQTSNYHRCGRTDKGVSAFGQVISLDLRSHFPRGRDSEDFNVKEEANAAAEEIRY 160
Query: 181 VRVLNRVLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEH 240
+LNRVLP DIRIL W P F ARFSCL R Y+YFF + L+I M+ A K +G H
Sbjct: 161 THILNRVLPPDIRILAWAPVEPSFSARFSCLERTYRYFFPRADLDIVTMDYAAQKYVGTH 220
Query: 241 DFRNFCKMDATN-VHNYRRHITMFEI-----FPTDVRYGGN-QLWVIKIRGSAFLWHQVR 293
DFRN CKMD N V N++R I ++ P + R+ QL ++ G AFL+HQVR
Sbjct: 221 DFRNLCKMDVANGVINFQRTILSAQVQLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQVR 280
Query: 294 CMVAVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDA 353
CM+A+LFL+G+G+E P +ID LL+ K P+KPQY M+ E PLVL C+FE++K++ +A
Sbjct: 281 CMMAILFLIGQGMEKPEIIDELLNIEKNPQKPQYSMAVEFPLVLYDCKFENVKWIYDQEA 340
Query: 354 GEALRIHLVNECQTFQLQAAVFHEAL--LNCVPLLHDQSLPPSRGTTK------------ 399
E HL ++ + + L L+ VP+ P G T+
Sbjct: 341 QEFNITHLQQLWANHAVKTHMLYSMLQGLDTVPVPCGIG-PKMDGMTEWGNVKPSVIKQT 399
Query: 400 -------KKASYVPLMSRPTEPSYEER 419
K +Y PLM+RP E R
Sbjct: 400 SAFVEGVKMRTYKPLMNRPKCQGLESR 426
>I3M2V0_SPETR (tr|I3M2V0) tRNA pseudouridine synthase OS=Spermophilus
tridecemlineatus GN=PUS3 PE=3 SV=1
Length = 479
Score = 266 bits (679), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 171/451 (37%), Positives = 240/451 (53%), Gaps = 58/451 (12%)
Query: 1 MATQLSDVDHIATLQARVKELEAENAKLLSQ---LADSHIHEMEKKLHVSGEKNTGSIKG 57
MA +D + I L RV+ELE E +L + + DS I E ++GS K
Sbjct: 1 MAENDTDRNQIEKLLQRVQELEQEVQRLKKEQDNIKDSTIKE----------DSSGSGKA 50
Query: 58 NRKSEEKIEKMTGYNTRFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALA 117
R + S H KR+VAL++ Y G + GFAS+ T+E ++F+AL
Sbjct: 51 KRAFD-------------FSAHGKRHVALRIAYLGWGYQGFASQENTNNTIEEKLFEALT 97
Query: 118 KIRLLVGDKKESQYSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEG- 176
K RL V ++ S Y RCGRTDKGVS+ GQVI+L LRS + G+++ + +E ++
Sbjct: 98 KTRL-VESRQTSNYHRCGRTDKGVSAFGQVISLDLRSRF-LRGSDSEDPN-LKDEANDAA 154
Query: 177 -EIDYVRVLNRVLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIK 235
EI Y +LNRVLP DIR+L W P F ARFSCL R Y+YFF + L+I M A K
Sbjct: 155 KEIRYTHILNRVLPPDIRVLAWAPVEPSFSARFSCLERTYRYFFPRADLDILTMNFAAQK 214
Query: 236 LIGEHDFRNFCKMDATN-VHNYRRHITMFEIFPTDVRYGGN------QLWVIKIRGSAFL 288
+G HDFRN CKMD N V N++R I ++ G QL ++ G AFL
Sbjct: 215 YVGTHDFRNLCKMDVANGVINFQRTILSAQVQLVSQSMGEERWQEPFQLCQFEVIGQAFL 274
Query: 289 WHQVRCMVAVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFM 348
+HQVRCM+A+LFL+G+GLE P +ID LL+ + P+KPQY M+ E PLVL C+FE+I ++
Sbjct: 275 YHQVRCMMAILFLIGQGLEKPEIIDELLNIERNPQKPQYSMAIEFPLVLYDCKFENITWI 334
Query: 349 CSSDAGEALRIHLVNECQTFQLQAAVFHEAL--LNCVPL-----------LHDQSLPPS- 394
+ E HL ++ + + L L+ V L + +++ PS
Sbjct: 335 YDQEVQEYNVTHLQQLWANHAVKTQILYSMLQGLDSVELPYGTGPKMDGAIEWRNIKPSI 394
Query: 395 -RGTTK-----KKASYVPLMSRPTEPSYEER 419
+ T+ K +Y PLM RP E R
Sbjct: 395 IKQTSAFVEGVKMRTYRPLMDRPKCQGLESR 425
>F1S759_PIG (tr|F1S759) tRNA pseudouridine synthase OS=Sus scrofa
GN=LOC100739830 PE=3 SV=1
Length = 479
Score = 265 bits (677), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 173/451 (38%), Positives = 235/451 (52%), Gaps = 66/451 (14%)
Query: 6 SDVDHIAT--LQARVKELEAENAKLLSQLA---DSHIHEMEKKLHVSGEKNTGSIKGNRK 60
+D+D I T L RV+ELE E +L + A DS + E S G R+
Sbjct: 4 NDIDRIQTEKLLKRVQELEQEVQRLKQEQANNKDSKVRE--------------SSSGGRR 49
Query: 61 SEEKIEKMTGYNTRFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIR 120
++ + S H +R+VALK+ Y G + GFAS+ T+E ++F+AL K R
Sbjct: 50 AKRAFD---------FSAHGRRHVALKIAYLGWGYQGFASQENTSNTIEEKLFEALTKTR 100
Query: 121 LLVGDKKESQYSRCGRTDKGVSSVGQVIALYLRSN-LKISGANTGSSGEIVEEQHEGEID 179
L V +++ S Y RCGRTDKGVS+ GQVI+L LRS+ LK + + + V + + EI
Sbjct: 101 L-VENRQTSNYHRCGRTDKGVSAFGQVISLDLRSHFLKDKDSEDINLKDEVNDATK-EIR 158
Query: 180 YVRVLNRVLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGE 239
Y +LNRVLP DIR+L W P F ARFSCL R Y+YFF L+I M A K +G
Sbjct: 159 YTHILNRVLPPDIRVLAWAPVEPSFSARFSCLERTYRYFFPHADLDIVTMNYAAQKYVGT 218
Query: 240 HDFRNFCKMDATN-VHNYRRHITMFEI------FPTDVRYGGNQLWVIKIRGSAFLWHQV 292
HDFRN CKMD N V N++R I ++ + QL ++ G AFL+HQV
Sbjct: 219 HDFRNLCKMDVANGVTNFQRTILSAQVQLLSQSLEEERWQEAFQLCQFEVVGQAFLYHQV 278
Query: 293 RCMVAVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSD 352
RCM+AVLFL+G+G+E P VID LL+ K P+KPQY M+ E PLVL C+FE+IK++ +
Sbjct: 279 RCMMAVLFLIGQGMEKPEVIDELLNIEKNPQKPQYSMAVEFPLVLYDCKFENIKWIYDRE 338
Query: 353 AGEALRIHLVNECQTFQLQAAVFHEALLNCVPLLHDQSLPPSRGTTK------------- 399
E HL Q AV + L + + L ++P G +
Sbjct: 339 VQEFNVTHL----QQLWANHAVKTQMLYSMLQGLDSVAVPCGTGPSMDGVIEWRNVKPAV 394
Query: 400 -----------KKASYVPLMSRPTEPSYEER 419
K +Y PLM RP E R
Sbjct: 395 IKQTSAFVEGVKMRTYKPLMDRPKCQGLEAR 425
>G3RGD8_GORGO (tr|G3RGD8) tRNA pseudouridine synthase OS=Gorilla gorilla gorilla
GN=PUS3 PE=3 SV=1
Length = 481
Score = 265 bits (676), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 169/452 (37%), Positives = 234/452 (51%), Gaps = 59/452 (13%)
Query: 1 MATQLSDVDHIATLQARVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRK 60
MA +D + L RV+ELE E +L + A + K +I+ N
Sbjct: 1 MADNDTDRNQTEKLLKRVQELEQEVQRLKKEQAKN--------------KEDSNIRENSS 46
Query: 61 SEEKIEKMTGYNTRFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIR 120
K ++ + S H +R+VAL++ Y G + GFAS+ T+E ++F+AL K R
Sbjct: 47 GAGKTKRAFDF-----SAHGRRHVALRIAYMGWGYQGFASQENTNNTIEEKLFEALTKTR 101
Query: 121 LLVGDKKESQYSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEG---- 176
L V ++ S Y RCGRTDKGVS+ GQVI+L LRS G E + E
Sbjct: 102 L-VESRQTSNYHRCGRTDKGVSAFGQVISLDLRSQFP-----RGRDSEDFNVKEEANVAA 155
Query: 177 -EIDYVRVLNRVLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIK 235
EI Y +LNRVLP DIRIL W P F ARFSCL R Y+YFF + L+I M+ A K
Sbjct: 156 EEIRYTHILNRVLPPDIRILAWAPVEPSFSARFSCLERTYRYFFPRADLDIVTMDYAAQK 215
Query: 236 LIGEHDFRNFCKMDATN-VHNYRRHITMFEI-----FPTDVRYGGN-QLWVIKIRGSAFL 288
+G HDFRN CKMD N V N++R I ++ P + R+ QL ++ G AFL
Sbjct: 216 YVGTHDFRNLCKMDVANGVINFQRTILSAQVQLVRQSPGEGRWQEPFQLCQFEVTGQAFL 275
Query: 289 WHQVRCMVAVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFM 348
+HQVRCM+A+LFL+G+G+E P +ID LL+ K P+KPQY M+ E PLVL C+FE++K++
Sbjct: 276 YHQVRCMMAILFLIGQGMEKPEIIDELLNIEKNPQKPQYSMAVEFPLVLYDCKFENVKWI 335
Query: 349 CSSDAGEALRIHLVNECQTFQLQAAVFHEAL--LNCVPLLHDQSLPPSRGTTK------- 399
+A + HL ++ + + L L+ VP+ P G T+
Sbjct: 336 YDQEAQKFNITHLQQLWANHAVKTHMLYSMLQGLDSVPVPCGIG-PKMDGMTEWGNVKPS 394
Query: 400 ------------KKASYVPLMSRPTEPSYEER 419
K +Y PLM RP E R
Sbjct: 395 VIKQTSAFVEGVKMRTYKPLMDRPKCQGLESR 426
>H2NFT3_PONAB (tr|H2NFT3) tRNA pseudouridine synthase OS=Pongo abelii GN=PUS3
PE=3 SV=1
Length = 481
Score = 265 bits (676), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 154/373 (41%), Positives = 210/373 (56%), Gaps = 37/373 (9%)
Query: 1 MATQLSDVDHIATLQARVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRK 60
MA +D + L RV+ELE E +L + A + K +I+ N
Sbjct: 1 MADNDTDRNQTEKLLKRVQELEQEVQRLKKEQAKN--------------KEDSNIRENSS 46
Query: 61 SEEKIEKMTGYNTRFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIR 120
K ++ + S H +R+VAL++ Y G + GFAS+ T+E ++F+AL K R
Sbjct: 47 GAGKTKRAFDF-----SAHGRRHVALRIAYMGWGYQGFASQENTNNTIEEKLFEALTKTR 101
Query: 121 LLVGDKKESQYSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEG---- 176
L V ++ S Y RCGRTDKGVS+ GQVI+L LRS G E + E
Sbjct: 102 L-VESRQTSNYHRCGRTDKGVSAFGQVISLDLRSQFP-----RGKDSEDFNVKGEANAAA 155
Query: 177 -EIDYVRVLNRVLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIK 235
EI Y +LNRVLP DIRIL W P F ARFSCL R Y+YFF + L+I M+ A K
Sbjct: 156 EEIRYTHILNRVLPPDIRILAWAPVEPSFSARFSCLERTYRYFFPRADLDIVTMDYAAQK 215
Query: 236 LIGEHDFRNFCKMDATN-VHNYRRHITMFEI-----FPTDVRYGGN-QLWVIKIRGSAFL 288
+G HDFRN CKMD N V N++R I ++ P + R+ QL ++ G AFL
Sbjct: 216 YVGTHDFRNLCKMDVANGVINFQRTILSAQVQLVGQSPGEGRWQEPFQLCQFEVTGQAFL 275
Query: 289 WHQVRCMVAVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFM 348
+HQVRCM+A+LFL+G+G+E P +ID LL+ K P+KPQY M+ E PLVL C+FE++K++
Sbjct: 276 YHQVRCMMAILFLIGQGMEKPEIIDELLNIEKNPQKPQYSMAIEFPLVLYDCKFENVKWI 335
Query: 349 CSSDAGEALRIHL 361
+A E HL
Sbjct: 336 YDQEAQEFNITHL 348
>G1R7A9_NOMLE (tr|G1R7A9) tRNA pseudouridine synthase OS=Nomascus leucogenys
GN=PUS3 PE=3 SV=1
Length = 481
Score = 264 bits (675), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 151/368 (41%), Positives = 209/368 (56%), Gaps = 27/368 (7%)
Query: 1 MATQLSDVDHIATLQARVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRK 60
MA +D + L RV+ELE E +L + A + K +I+ N
Sbjct: 1 MADNDTDRNQTEKLLKRVQELEQEVQRLKKEQAKN--------------KEDSNIRENSS 46
Query: 61 SEEKIEKMTGYNTRFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIR 120
K ++ + S H +R+VAL++ Y G + GFAS+ T+E ++F+AL K R
Sbjct: 47 GAGKTKRAFDF-----SAHGRRHVALRIAYMGWGYQGFASQENTNNTIEEKLFEALTKTR 101
Query: 121 LLVGDKKESQYSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDY 180
L V ++ S Y RCGRTDKGVS+ GQVI+L LRS + + + EI Y
Sbjct: 102 L-VESRQTSNYHRCGRTDKGVSAFGQVISLDLRSQFPRGRESEDFNVKEEANAAAEEIRY 160
Query: 181 VRVLNRVLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEH 240
+LNRVLP DIRIL W P F ARFSCL R Y+YFF + L+I M+ A K +G H
Sbjct: 161 THILNRVLPPDIRILAWAPVEPSFSARFSCLERTYRYFFPRADLDIVTMDYAAQKYVGTH 220
Query: 241 DFRNFCKMDATN-VHNYRRHITMFEI-----FPTDVRYGGN-QLWVIKIRGSAFLWHQVR 293
DFRN CKMD N V N++R I ++ P + R+ QL ++ G AFL+HQVR
Sbjct: 221 DFRNLCKMDVANGVVNFQRTILSAQVQLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQVR 280
Query: 294 CMVAVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDA 353
CM+A+LFL+G+G+E P +ID LL+ K P+KPQY M+ E PLVL C+FE++K++ +A
Sbjct: 281 CMMAILFLIGQGMEKPELIDELLNIEKNPQKPQYSMAVEFPLVLYDCKFENVKWIYDQEA 340
Query: 354 GEALRIHL 361
E HL
Sbjct: 341 QEFNITHL 348
>G1Q9U0_MYOLU (tr|G1Q9U0) tRNA pseudouridine synthase OS=Myotis lucifugus PE=3
SV=1
Length = 480
Score = 264 bits (675), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 168/450 (37%), Positives = 231/450 (51%), Gaps = 56/450 (12%)
Query: 1 MATQLSDVDHIATLQARVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRK 60
MA +D L RV+ELE E +L + A++ K + E ++G+ K R
Sbjct: 1 MAENDTDRTQTDKLLKRVQELEQEIERLKKEQANT-------KDSNARENSSGARKAKRA 53
Query: 61 SEEKIEKMTGYNTRFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIR 120
+ S H +R+VALK+ Y G + GFAS+ T+E ++F+AL K R
Sbjct: 54 FD-------------FSAHGQRHVALKIAYLGWGYQGFASQENTSNTIEEKLFEALTKTR 100
Query: 121 LLVGDKKESQYSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDY 180
L V ++ S+Y RCGRTDKGVS+ GQVI+L LRS+ + + + EI Y
Sbjct: 101 L-VESRQTSKYHRCGRTDKGVSAFGQVISLDLRSHFPKGRDSEDFNLKDEVNDDAKEIRY 159
Query: 181 VRVLNRVLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEH 240
+LNRVLP DIR+L W P F ARFSCL R Y+YFF + L+I M A K +G H
Sbjct: 160 THILNRVLPPDIRVLAWAPVEPSFSARFSCLERTYRYFFPRADLDIVTMNCAAQKYVGTH 219
Query: 241 DFRNFCKMDATN-VHNYRRHITMFEI------FPTDVRYGGNQLWVIKIRGSAFLWHQVR 293
DFRN CKMD N V N++R I ++ D QL ++ G AFL+HQVR
Sbjct: 220 DFRNLCKMDVANGVINFQRTILSAQVQLVGQSLAEDRWQEPFQLCQFEVTGQAFLYHQVR 279
Query: 294 CMVAVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDA 353
CM+A+LFL+G+G+E P +ID LL+ K P+KPQY M+ E PLVL C+FE+IK++ +
Sbjct: 280 CMMAILFLIGQGMEKPEIIDELLNIEKNPQKPQYSMAVEFPLVLYDCKFENIKWLYDQEV 339
Query: 354 GEALRIHLVNECQTFQLQAAVFHEALLNCVPLLHDQSLPPSRGTTK-------------- 399
E +L Q + QA H L + + L ++P GT
Sbjct: 340 QEFNITYLQ---QQWANQAVKTH-VLYSMLQGLESVAVPCETGTETDEVIEWRNVKPCVI 395
Query: 400 ----------KKASYVPLMSRPTEPSYEER 419
K +Y PLM RP E R
Sbjct: 396 KQTSAFVEGVKMRTYKPLMDRPKCQGLESR 425
>F7BZ33_HORSE (tr|F7BZ33) tRNA pseudouridine synthase OS=Equus caballus GN=PUS3
PE=3 SV=1
Length = 479
Score = 263 bits (673), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 174/456 (38%), Positives = 233/456 (51%), Gaps = 77/456 (16%)
Query: 6 SDVDHIAT--LQARVKELEAENAKLLSQL--ADSHIHEMEKKLHVSGEKNTGSIKGNRKS 61
+D+D I T L RV+ELE E +L Q DS+I E +G+ K R
Sbjct: 4 NDIDRIQTEKLLKRVQELEQEVQRLKEQTNNKDSNIRE----------NYSGTGKAKRAF 53
Query: 62 EEKIEKMTGYNTRFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRL 121
+ S H +R+VAL++ Y G + GFAS+ T+E ++F+AL K RL
Sbjct: 54 D-------------FSAHGRRHVALRIAYLGWGYQGFASQENTNNTIEEKLFEALTKTRL 100
Query: 122 LVGDKKESQYSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEG--EID 179
V ++ S Y RCGRTDKGVS+ GQVI+L LRS+ + +E ++ EI
Sbjct: 101 -VESRQTSNYHRCGRTDKGVSAFGQVISLDLRSHF--PNGRDSEDFNLKDEVNDAAKEIR 157
Query: 180 YVRVLNRVLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGE 239
Y +LNRVLP DIR+L W P F ARFSCL R Y+YFF + L+I M SA K +G
Sbjct: 158 YTHILNRVLPPDIRVLAWAPVEPSFSARFSCLERTYRYFFPRADLDIITMNSAAQKYVGT 217
Query: 240 HDFRNFCKMDATN-VHNYRRHITMFEIFPTDVRYGGN-----------QLWVIKIRGSAF 287
HDFRN CKMD N V N++R I V+ G QL ++ G AF
Sbjct: 218 HDFRNLCKMDVANGVINFQR-----TILSAQVQLVGQSLAEERGQEPFQLCQFEVIGQAF 272
Query: 288 LWHQVRCMVAVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKF 347
L+HQVRCM+A+LFL+G+G+E P VID LL+ K P+KPQY M+ E PLVL C+FE+IK+
Sbjct: 273 LYHQVRCMMAILFLIGQGMEKPEVIDELLNIQKNPQKPQYSMAVEFPLVLYDCKFENIKW 332
Query: 348 MCSSD-------------AGEALRIHLVNE-----------CQTFQLQAAVFHEALLNCV 383
+ + A +A++ H+V C T V N
Sbjct: 333 IYDREVQEFNVTHLQQLWANQAVKTHIVYSMLQGLDSAAVPCGTGPKMDGVIE--WRNVT 390
Query: 384 PLLHDQSLPPSRGTTKKKASYVPLMSRPTEPSYEER 419
P + Q+ G K +Y PLM RP E R
Sbjct: 391 PSVIKQTSAFVEGV--KMRTYKPLMDRPKCQGLESR 424
>G1SLV6_RABIT (tr|G1SLV6) tRNA pseudouridine synthase OS=Oryctolagus cuniculus
GN=LOC100340121 PE=3 SV=1
Length = 480
Score = 263 bits (672), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 151/371 (40%), Positives = 206/371 (55%), Gaps = 34/371 (9%)
Query: 1 MATQLSDVDHIATLQARVKELEAENAKLLSQLA---DSHIHEMEKKLHVSGEKNTGSIKG 57
MA +D + L R++ELE E +L + DS+I E +G+ K
Sbjct: 1 MAENDTDRNQTEKLLKRIQELEQEVQRLKKEQGNYKDSNIRE----------NASGTGKA 50
Query: 58 NRKSEEKIEKMTGYNTRFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALA 117
R T S H +R+VAL++ Y G + GFAS+ T+E ++F+AL
Sbjct: 51 KR-------------TFDFSAHGRRHVALRIAYLGWGYQGFASQENTTNTIEEKLFEALT 97
Query: 118 KIRLLVGDKKESQYSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGE 177
K RL V ++ S Y RCGRTDKGVS+ GQVI+L LRS ++ + + + E
Sbjct: 98 KTRL-VESRQTSNYHRCGRTDKGVSAFGQVISLDLRSQFPMAKDSESCNSKDEANDVAEE 156
Query: 178 IDYVRVLNRVLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLI 237
I Y +LNRVLP DIRIL W P F ARFSCL R Y YFF + L+I M A K +
Sbjct: 157 IRYTHILNRVLPPDIRILAWAPVDPGFSARFSCLERTYHYFFPRADLDIVTMNCAAQKYV 216
Query: 238 GEHDFRNFCKMDATN-VHNYRRHITMFEIFPTDVRYGGN------QLWVIKIRGSAFLWH 290
G HDFRN CKMD N V N++R I ++ G QL ++ G AFL+H
Sbjct: 217 GTHDFRNLCKMDVANGVINFQRTILSAKVQLVGQSLGEERWQEHFQLCQFEVTGQAFLYH 276
Query: 291 QVRCMVAVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCS 350
QVRCM+A+LFL+G+G+E P++ID LL+ K P+KPQY M+ E PLVL C+FE+IK++
Sbjct: 277 QVRCMMAILFLIGQGMEKPDIIDELLNVEKNPQKPQYSMAVEFPLVLHDCKFENIKWIYD 336
Query: 351 SDAGEALRIHL 361
+ + HL
Sbjct: 337 QEVQQFNVTHL 347
>H9G3C7_ANOCA (tr|H9G3C7) tRNA pseudouridine synthase OS=Anolis carolinensis
GN=PUS3 PE=3 SV=2
Length = 455
Score = 263 bits (671), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 132/307 (42%), Positives = 186/307 (60%), Gaps = 9/307 (2%)
Query: 79 HSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLVGDKKESQYSRCGRTD 138
+ +R+VALK+ Y G + GFAS+ T+E ++F+AL K RL V +++ S Y RCGRTD
Sbjct: 61 YGRRHVALKIAYLGWEYQGFASQENTNNTIEEKLFEALGKTRL-VKNRQTSNYHRCGRTD 119
Query: 139 KGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDYVRVLNRVLPNDIRILGWC 198
KGVS+ GQVI+L LRSNL + ++ + + E I Y +LN+VLP DIR+L W
Sbjct: 120 KGVSAFGQVISLDLRSNLPENKPGDTATNKATKASEE--IHYTHILNQVLPPDIRVLAWA 177
Query: 199 PAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMDATN-VHNYR 257
P +F ARF+CL R Y+YFF L++ M A K +G HDFRN CKMD N V ++
Sbjct: 178 PVEPNFSARFNCLKRTYRYFFPCATLDVALMNRAAQKFVGTHDFRNLCKMDVANGVTSFH 237
Query: 258 RHITMFEIFPTDVRYGGNQ-----LWVIKIRGSAFLWHQVRCMVAVLFLVGKGLESPNVI 312
R I E+ P D Q ++ ++ G AFL+HQVRCM+A+LFL+G+ +E P +I
Sbjct: 238 RTILAAEVQPVDGESETEQQNPFRMYYFEVTGQAFLYHQVRCMMAILFLIGQRMERPEII 297
Query: 313 DMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAGEALRIHLVNECQTFQLQA 372
D LLD K PRKPQY M+ E PLVL C+FE+++++ E HL +++
Sbjct: 298 DELLDIEKNPRKPQYSMAVEFPLVLYDCDFENLQWIYDQKVQEFNVTHLQQLWTNHAVKS 357
Query: 373 AVFHEAL 379
+ H L
Sbjct: 358 HMLHSML 364
>M7AXZ5_CHEMY (tr|M7AXZ5) tRNA pseudouridine synthase 3 OS=Chelonia mydas
GN=UY3_13282 PE=4 SV=1
Length = 491
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 167/452 (36%), Positives = 234/452 (51%), Gaps = 56/452 (12%)
Query: 1 MATQLSDVDHIATLQARVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRK 60
MA + + D L RV+ELE E +L +L +E K ++N ++ +K
Sbjct: 1 MADRGMEKDKGEGLLKRVQELEEEVKRLQEKL-------LEGKEGTDIKRNPSALGKTKK 53
Query: 61 SEEKIEKMTGYNTRFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIR 120
+++ + Y +R+VALK+ Y G + GFAS+ T+E ++F+AL+K R
Sbjct: 54 RQQRPFDFSAY--------GRRHVALKIAYLGWGYQGFASQENTNNTIEEKLFEALSKTR 105
Query: 121 LLVGDKKESQYSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHE--GEI 178
L V +++ S Y RCGRTDKGVS+ GQVI+L LRS+L G G + ++ EI
Sbjct: 106 L-VDNRQTSNYHRCGRTDKGVSAFGQVISLDLRSSLSEGKKVNGHEGGLEDKASSPANEI 164
Query: 179 DYVRVLNRVLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIG 238
Y +LNRVLP DIR+L W F ARFSCL R Y+YFF L++ M +A K +G
Sbjct: 165 RYTHILNRVLPPDIRVLAWASVEPSFSARFSCLKRTYRYFFPHADLDVALMNAAAQKYVG 224
Query: 239 EHDFRNFCKMDATN-VHNYRRHITMFEIFPTDVRYGGN------QLWVIKIRGSAFLWHQ 291
HDFRN CKMD N V N++R I ++ D R G QL+ ++ G AFL+HQ
Sbjct: 225 THDFRNLCKMDVANGVTNFQRTILTAQVQLVD-REGETGLQDPFQLYQFEVTGQAFLYHQ 283
Query: 292 VRCMVAVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSS 351
VRCM+A+L L+G+ +E+P +ID LLD K PRKP M+ E PLVL CEFE+I+++
Sbjct: 284 VRCMMAILLLIGQRMENPEIIDELLDVEKNPRKPH--MAVEFPLVLYDCEFENIQWIYDR 341
Query: 352 DAGEALRIHLVNECQTFQLQAAVFHEALLNCVPLLHDQSLPPSRGTTK------------ 399
+ E HL Q AV L N + L +P G K
Sbjct: 342 EVQEFNVTHL----QQLWANHAVKTHMLYNMLQGLDSAVIPIGTGPEKNRMVLWREVKPP 397
Query: 400 ------------KKASYVPLMSRPTEPSYEER 419
K +Y PL++RP E R
Sbjct: 398 VHNQISSFIEGVKARTYKPLLARPKCEGLESR 429
>I1CE01_RHIO9 (tr|I1CE01) tRNA pseudouridine synthase OS=Rhizopus delemar (strain
RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880)
GN=RO3G_11392 PE=3 SV=1
Length = 450
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 141/323 (43%), Positives = 195/323 (60%), Gaps = 21/323 (6%)
Query: 76 MSHHSKRYVALKVMYFGKRFYGFASEAQME--PTVESEIFKALAKIRLLVGDKKESQYSR 133
M+ ++KR +AL+V Y G + GFAS+ E PT+E +FKAL + +L+ Y+R
Sbjct: 53 MTKYTKRKIALRVAYIGWNYIGFASQQDPERIPTIEDMLFKALKECKLVAEIDDSIDYTR 112
Query: 134 CGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDYVRVLNRVLPNDIR 193
CGRTD+GVS +GQVIAL++RS + S +++ E E YV LNR+LP DIR
Sbjct: 113 CGRTDRGVSGLGQVIALWVRSK----KLTSDPSPDLLPA--EQEFPYVDTLNRMLPPDIR 166
Query: 194 ILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMD-ATN 252
+L W P P DF AR+ C SR YKYFF + ++I M GEHDFRNFCKMD A N
Sbjct: 167 VLAWAPVPEDFSARYHCTSRTYKYFFSRGKMDIEKMRQGCKYFEGEHDFRNFCKMDPAKN 226
Query: 253 VHNYRRHITMFEIFPTD----VRYG-GNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLE 307
+ +Y RHI + P D G G + ++++G+AFLWHQVR M++VLFLVG+GLE
Sbjct: 227 IQSYDRHILSMTVRPVDHTQTAHIGDGTDFYEVELKGTAFLWHQVRYMMSVLFLVGQGLE 286
Query: 308 SPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAG------EALRIHL 361
P I +LD K P KP + M+S++PLVL CEF+DI++ S A +LRI+L
Sbjct: 287 PPETIRDVLDIEKVPSKPDFPMASDLPLVLYDCEFKDIEWFYSFKASTYDPFPSSLRIYL 346
Query: 362 -VNECQTFQLQAAVFHEALLNCV 383
NE Q+ ++ ++ L V
Sbjct: 347 HYNELWNVQMIRSLTYQYYLTKV 369
>H0WZH3_OTOGA (tr|H0WZH3) tRNA pseudouridine synthase OS=Otolemur garnettii
GN=PUS3 PE=3 SV=1
Length = 480
Score = 262 bits (669), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 168/453 (37%), Positives = 225/453 (49%), Gaps = 62/453 (13%)
Query: 1 MATQLSDVDHIATLQARVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRK 60
MA D + L RV+ELE E +L + A++ ++ E +GS K R
Sbjct: 1 MAENDRDRNQTEKLLKRVRELEQEVQRLRKERANNKDSDIR-------ENPSGSGKAKRA 53
Query: 61 SEEKIEKMTGYNTRFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIR 120
+ S H +R++ALK+ Y G + GFAS+ T+E ++F+AL K R
Sbjct: 54 FD-------------FSAHGRRHIALKMAYLGWGYQGFASQENTNNTIEEKLFEALTKTR 100
Query: 121 LLVGDKKESQYSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDY 180
L V ++ S Y RCGRTDKGVS+ GQVI+L LRS + + + EI Y
Sbjct: 101 L-VESRQTSNYHRCGRTDKGVSAFGQVISLDLRSQFPRDRDSEDFNLKDEASSAAKEIRY 159
Query: 181 VRVLNRVLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEH 240
+LNRVLP DIRIL W P F ARFSCL R Y+YFF L+I M A K +G H
Sbjct: 160 THILNRVLPPDIRILAWAPVEPSFSARFSCLERTYRYFFPHADLDIETMNYAAQKYVGTH 219
Query: 241 DFRNFCKMDATN-VHNYRRHITMFEIFPTDVRYGGN-----------QLWVIKIRGSAFL 288
DFRNFCKMD N V N++R I V+ G QL ++ G AFL
Sbjct: 220 DFRNFCKMDVANGVINFQR-----TILSAQVQLVGQSLSEERWQEPFQLCQFEVIGQAFL 274
Query: 289 WHQVRCMVAVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFM 348
+HQVRCM+A+LFL+G+G+E P +ID LL+ K P+KPQY M+ E PLVL C+FE+IK++
Sbjct: 275 YHQVRCMMAILFLIGQGMEKPEIIDELLNIEKNPQKPQYSMAIEFPLVLYDCKFENIKWI 334
Query: 349 CSSDAGEALRIHLVNECQTFQLQAAVFHEALL----------------------NCVPLL 386
+ E HL ++ V + L N P +
Sbjct: 335 YDREVQEFNVTHLQQLWANHAVKTHVLYSMLQGLDSVTVPCGTGPKMDGMKEWRNVQPSI 394
Query: 387 HDQSLPPSRGTTKKKASYVPLMSRPTEPSYEER 419
Q+ G K +Y PLM RP E R
Sbjct: 395 MKQTSAFVEGV--KMRTYKPLMDRPKCQGLESR 425
>E2RGS6_CANFA (tr|E2RGS6) tRNA pseudouridine synthase OS=Canis familiaris GN=PUS3
PE=3 SV=1
Length = 480
Score = 262 bits (669), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 150/368 (40%), Positives = 206/368 (55%), Gaps = 28/368 (7%)
Query: 1 MATQLSDVDHIATLQARVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRK 60
MA +D I L RV+ELE E +L + A++ K + E + G+ K R
Sbjct: 1 MAENDTDRLQIEKLLKRVQELEEEVQRLKKEQANN-------KDSNARENSLGARKAKRA 53
Query: 61 SEEKIEKMTGYNTRFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIR 120
+ S H +R+VALK+ Y G + GFAS+ T+E ++F AL K R
Sbjct: 54 FD-------------FSAHGRRHVALKIAYLGWGYQGFASQENTNNTIEEKLFDALTKTR 100
Query: 121 LLVGDKKESQYSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDY 180
L V ++ S Y RCGRTDKGVS+ GQVI+L LRS+ + S+ + EI Y
Sbjct: 101 L-VESRQTSNYHRCGRTDKGVSAFGQVISLDLRSHFPEGSTSEDSNLKNEVNDVAKEIRY 159
Query: 181 VRVLNRVLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEH 240
+LNRVLP DIR+L W P F ARFSCL R Y+YFF + L+I M A K +G H
Sbjct: 160 THILNRVLPPDIRVLAWAPVEPSFSARFSCLERTYRYFFPRADLDIITMNYAAQKYVGTH 219
Query: 241 DFRNFCKMDATN-VHNYRRHITMFEI------FPTDVRYGGNQLWVIKIRGSAFLWHQVR 293
DFRN CKMD N V N++R + ++ + QL ++ G AFL+HQVR
Sbjct: 220 DFRNLCKMDVANGVINFQRTVLFAQVELVGQSLDKEQWQEPFQLCQFEVVGQAFLYHQVR 279
Query: 294 CMVAVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDA 353
CM+A+LFL+G+G+E P +ID LL+ K P+KPQY M+ E PLVL C+FE++K++ +
Sbjct: 280 CMMAILFLIGQGMEKPEIIDELLNIEKNPQKPQYSMAVEFPLVLYDCKFENVKWIYDREV 339
Query: 354 GEALRIHL 361
E HL
Sbjct: 340 QEFNVTHL 347
>H0W1G2_CAVPO (tr|H0W1G2) tRNA pseudouridine synthase OS=Cavia porcellus
GN=LOC100717478 PE=3 SV=1
Length = 480
Score = 261 bits (668), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 175/460 (38%), Positives = 231/460 (50%), Gaps = 75/460 (16%)
Query: 1 MATQLSDVDHIATLQARVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRK 60
MA +D + L R++ELE E +L K S +IK N
Sbjct: 1 MAEADTDRNQTEMLLKRIQELEQEVQRL--------------KKEQSNNIKDPNIKENSS 46
Query: 61 SEEKIEKMTGYNTRFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIR 120
K +++ + S HS+R VAL++ Y G + GFAS+ + T+E ++F+A+ K R
Sbjct: 47 GSAKAKRVFDF-----SAHSRRRVALRIAYLGWGYQGFASQENTDNTIEEKLFEAMTKTR 101
Query: 121 LLVGDKKESQYSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHE----- 175
L + ++ S Y RCGRTDKGVS+ GQVI+L LRS G E + ++E
Sbjct: 102 L-IESRQTSSYHRCGRTDKGVSAFGQVISLDLRSQFP-----RGKDSEDLNLKNEVSDDA 155
Query: 176 GEIDYVRVLNRVLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIK 235
EI Y +LNRVLP DIR+L W P F ARFSCL R Y+YFF L+I M A K
Sbjct: 156 KEIRYTHILNRVLPPDIRVLAWAPVEPSFSARFSCLERTYRYFFPLADLDIVRMNYAAQK 215
Query: 236 LIGEHDFRNFCKMDATN-VHNYRRHITMFEIFPTDVRYGGN-----------QLWVIKIR 283
+G HDFRN CKMD N V N++R I +VR G QL ++
Sbjct: 216 YVGTHDFRNLCKMDVANGVINFQR-----TILSAEVRLVGQSLCAESWQEPFQLCQFEVT 270
Query: 284 GSAFLWHQVRCMVAVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFE 343
G AFL+HQVRCM+AVLFL+G+G+E P VID LL+ K P+KPQY M+ E PLVL C+FE
Sbjct: 271 GQAFLYHQVRCMMAVLFLIGQGMEEPQVIDELLNIEKNPQKPQYSMAVEFPLVLYDCKFE 330
Query: 344 DIKFMCSSDAGEALRIHLVNECQTFQLQAAVFHEALLNCVPLLHDQSLP----PS----- 394
+IK++ + E HL Q AV L N + L LP P+
Sbjct: 331 NIKWIYDHEVQEFNVTHL----QQLWANHAVKSHMLYNMLQGLDSVMLPYRTEPNMDGMT 386
Query: 395 -----RGTTKKKAS----------YVPLMSRPTEPSYEER 419
R + K+ S Y PLM RP E R
Sbjct: 387 DQRHVRPSVIKQTSAFVEGVKMRKYRPLMERPKCQGLESR 426
>K9ILC1_DESRO (tr|K9ILC1) tRNA pseudouridine synthase OS=Desmodus rotundus PE=2
SV=1
Length = 480
Score = 261 bits (667), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 170/450 (37%), Positives = 227/450 (50%), Gaps = 56/450 (12%)
Query: 1 MATQLSDVDHIATLQARVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRK 60
MA D L RV+ELE E +L + AD+ K + E +G+ K R
Sbjct: 1 MAENDRDTIQTDRLLKRVQELEQEVERLKKERADA-------KDSNTRESFSGAGKARRA 53
Query: 61 SEEKIEKMTGYNTRFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIR 120
+ S H +R+VALK+ Y G + GFAS+ T+E ++F+AL K R
Sbjct: 54 FD-------------FSAHGRRHVALKIAYLGWGYQGFASQENTSNTIEEKLFEALTKTR 100
Query: 121 LLVGDKKESQYSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDY 180
L V ++ + Y RCGRTDKGVS+ GQVI+L LRS + + + EI Y
Sbjct: 101 L-VESRQTANYHRCGRTDKGVSAFGQVISLDLRSYFPKDRDSEDLNIKDGVGDAAKEIRY 159
Query: 181 VRVLNRVLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEH 240
+LNRVLP DIR+L W P F ARFSCL R Y+YFF + L+I AM A K +G H
Sbjct: 160 THILNRVLPADIRVLAWAPVEPSFSARFSCLERTYRYFFPRADLDIEAMNCAAHKYVGTH 219
Query: 241 DFRNFCKMDATN-VHNYRRHITMFEI------FPTDVRYGGNQLWVIKIRGSAFLWHQVR 293
DFRN CKMD N V N++R I ++ D QL ++ G AFL+HQVR
Sbjct: 220 DFRNLCKMDVANGVINFQRTILSAQVKLVGQSLAEDGWQAPFQLCQFEVTGQAFLYHQVR 279
Query: 294 CMVAVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDA 353
CM+AVLFL+G+G+E P +ID LL+ K P+KPQY M+ E PLVL C+FE+I ++ +
Sbjct: 280 CMMAVLFLIGQGMEEPEIIDELLNVEKNPQKPQYSMAVEFPLVLYDCKFENIPWVYDREV 339
Query: 354 GEALRIHLVNECQTFQLQAAVFHEALLNCVPLLHDQSLPPSRGTTK-------------- 399
E HL Q + QA H L + + L ++P GT
Sbjct: 340 QEFNVAHLQ---QQWADQAVKTH-LLYSMLQGLDSVAVPCGTGTEAEGVIEWRSVKPPVI 395
Query: 400 ----------KKASYVPLMSRPTEPSYEER 419
K +Y PLM RP E R
Sbjct: 396 KHTSAFVEGVKMRTYKPLMDRPKCQGLESR 425
>F1RVF1_PIG (tr|F1RVF1) tRNA pseudouridine synthase OS=Sus scrofa
GN=LOC100739830 PE=3 SV=2
Length = 479
Score = 261 bits (667), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 172/451 (38%), Positives = 234/451 (51%), Gaps = 66/451 (14%)
Query: 6 SDVDHIAT--LQARVKELEAENAKLLSQLA---DSHIHEMEKKLHVSGEKNTGSIKGNRK 60
+D+D I T L RV+ELE E +L + A DS + E S G R+
Sbjct: 4 NDIDRIQTEKLLKRVQELEQEVQRLKQEQANNKDSKVRE--------------SSSGGRR 49
Query: 61 SEEKIEKMTGYNTRFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIR 120
++ + S H +R+VALK+ Y G + GFAS+ T+E ++F+AL K R
Sbjct: 50 AKRAFD---------FSAHGRRHVALKIAYLGWGYQGFASQENTSNTIEEKLFEALTKTR 100
Query: 121 LLVGDKKESQYSRCGRTDKGVSSVGQVIALYLRSN-LKISGANTGSSGEIVEEQHEGEID 179
L V +++ S Y RCGRTDKGVS+ GQVI+L LRS+ LK + + + V + + EI
Sbjct: 101 L-VENRQTSNYHRCGRTDKGVSAFGQVISLDLRSHFLKDKDSEDINLKDEVNDATK-EIR 158
Query: 180 YVRVLNRVLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGE 239
Y +LNRVLP DIR+L W P F ARFSCL R Y+YFF L+I M A K +G
Sbjct: 159 YTHILNRVLPPDIRVLAWAPVEPSFSARFSCLERTYRYFFPHADLDIVTMNYAAQKYVGT 218
Query: 240 HDFRNFCKMDATN-VHNYRRHITMFEI------FPTDVRYGGNQLWVIKIRGSAFLWHQV 292
HDFRN CKMD N V N++R I ++ + QL ++ G AFL+HQV
Sbjct: 219 HDFRNLCKMDVANGVTNFQRTILSAQVQLLSQSLEEERWQEAFQLCQFEVVGQAFLYHQV 278
Query: 293 RCMVAVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSD 352
RCM+AVLFL+G+G+E P VID LL+ K P+K QY M+ E PLVL C+FE+IK++ +
Sbjct: 279 RCMMAVLFLIGQGMEKPEVIDELLNIEKNPQKHQYSMAVEFPLVLYDCKFENIKWIYDRE 338
Query: 353 AGEALRIHLVNECQTFQLQAAVFHEALLNCVPLLHDQSLPPSRGTTK------------- 399
E HL Q AV + L + + L ++P G +
Sbjct: 339 VQEFNVTHL----QQLWANHAVKTQMLYSMLQGLDSVAVPCGTGPSMDGVIEWRNVKPAV 394
Query: 400 -----------KKASYVPLMSRPTEPSYEER 419
K +Y PLM RP E R
Sbjct: 395 IKQTSAFVEGVKMRTYKPLMDRPKCQGLEAR 425
>D2HV13_AILME (tr|D2HV13) tRNA pseudouridine synthase (Fragment) OS=Ailuropoda
melanoleuca GN=PANDA_016156 PE=3 SV=1
Length = 479
Score = 260 bits (665), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 167/446 (37%), Positives = 234/446 (52%), Gaps = 56/446 (12%)
Query: 6 SDVDHIAT--LQARVKELEAENAKLLSQLA---DSHIHEMEKKLHVSGEKNTGSIKGNRK 60
+++D I T L RV+ELE E +L + A DS++ E + G+ K R
Sbjct: 4 NEIDRIQTEKLLKRVQELEQEVQRLKKEQANNKDSNVRE----------NSLGAGKAKRA 53
Query: 61 SEEKIEKMTGYNTRFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIR 120
+ S H +R+VALK+ Y G + GFAS+ T+E ++F+AL K R
Sbjct: 54 FD-------------FSAHGRRHVALKIAYMGWGYQGFASQENTNNTIEEKLFEALTKTR 100
Query: 121 LLVGDKKESQYSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDY 180
L V ++ S Y RCGRTDKGVS+ GQVI+L LRS+ A+ + EI Y
Sbjct: 101 L-VESRQTSNYHRCGRTDKGVSAFGQVISLDLRSHFLKGRASEDFHVKDEVSDAAKEIRY 159
Query: 181 VRVLNRVLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEH 240
+LNRVLP DIR+L W P F ARFSCL R Y+YFF + L+I M A K +G H
Sbjct: 160 THILNRVLPPDIRVLAWAPVEPSFSARFSCLERTYRYFFPRADLDIVTMNYAAQKYVGTH 219
Query: 241 DFRNFCKMDATN-VHNYRRHITMFEI------FPTDVRYGGNQLWVIKIRGSAFLWHQVR 293
DFRN CKMD N V N++R I ++ + QL ++ G AFL+HQVR
Sbjct: 220 DFRNLCKMDVANGVINFQRTILSAQVQLVGQSLDKETWQEAFQLCQFEVTGQAFLYHQVR 279
Query: 294 CMVAVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDA 353
CM+A+LFL+G+G+E P +ID LL+ K P+KPQY M+ E PLVL C+FE+I+++ +
Sbjct: 280 CMMAILFLIGQGMEKPEIIDELLNIEKNPQKPQYSMAVEFPLVLYDCKFENIQWIYDREV 339
Query: 354 GEALRIHLVNECQTFQLQAAVFHEALLN----CVP---------LLHDQSLPPS--RGTT 398
E HL ++ V + L VP ++ +++ PS + T+
Sbjct: 340 QEFNVTHLQQLWANHAVKTHVLYSMLQGLDSVAVPCGTGPKMDGVIEWRNVKPSVIKQTS 399
Query: 399 K-----KKASYVPLMSRPTEPSYEER 419
K +Y PLM RP E R
Sbjct: 400 AFVEGVKMRTYKPLMDRPKCQGLESR 425
>G1KZV9_AILME (tr|G1KZV9) tRNA pseudouridine synthase OS=Ailuropoda melanoleuca
GN=PUS3 PE=3 SV=1
Length = 480
Score = 260 bits (665), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 167/446 (37%), Positives = 234/446 (52%), Gaps = 56/446 (12%)
Query: 6 SDVDHIAT--LQARVKELEAENAKLLSQLA---DSHIHEMEKKLHVSGEKNTGSIKGNRK 60
+++D I T L RV+ELE E +L + A DS++ E + G+ K R
Sbjct: 4 NEIDRIQTEKLLKRVQELEQEVQRLKKEQANNKDSNVRE----------NSLGAGKAKRA 53
Query: 61 SEEKIEKMTGYNTRFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIR 120
+ S H +R+VALK+ Y G + GFAS+ T+E ++F+AL K R
Sbjct: 54 FD-------------FSAHGRRHVALKIAYMGWGYQGFASQENTNNTIEEKLFEALTKTR 100
Query: 121 LLVGDKKESQYSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDY 180
L V ++ S Y RCGRTDKGVS+ GQVI+L LRS+ A+ + EI Y
Sbjct: 101 L-VESRQTSNYHRCGRTDKGVSAFGQVISLDLRSHFLKGRASEDFHVKDEVSDAAKEIRY 159
Query: 181 VRVLNRVLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEH 240
+LNRVLP DIR+L W P F ARFSCL R Y+YFF + L+I M A K +G H
Sbjct: 160 THILNRVLPPDIRVLAWAPVEPSFSARFSCLERTYRYFFPRADLDIVTMNYAAQKYVGTH 219
Query: 241 DFRNFCKMDATN-VHNYRRHITMFEI------FPTDVRYGGNQLWVIKIRGSAFLWHQVR 293
DFRN CKMD N V N++R I ++ + QL ++ G AFL+HQVR
Sbjct: 220 DFRNLCKMDVANGVINFQRTILSAQVQLVGQSLDKETWQEAFQLCQFEVTGQAFLYHQVR 279
Query: 294 CMVAVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDA 353
CM+A+LFL+G+G+E P +ID LL+ K P+KPQY M+ E PLVL C+FE+I+++ +
Sbjct: 280 CMMAILFLIGQGMEKPEIIDELLNIEKNPQKPQYSMAVEFPLVLYDCKFENIQWIYDREV 339
Query: 354 GEALRIHLVNECQTFQLQAAVFHEALLN----CVP---------LLHDQSLPPS--RGTT 398
E HL ++ V + L VP ++ +++ PS + T+
Sbjct: 340 QEFNVTHLQQLWANHAVKTHVLYSMLQGLDSVAVPCGTGPKMDGVIEWRNVKPSVIKQTS 399
Query: 399 K-----KKASYVPLMSRPTEPSYEER 419
K +Y PLM RP E R
Sbjct: 400 AFVEGVKMRTYKPLMDRPKCQGLESR 425
>G3SLW6_LOXAF (tr|G3SLW6) tRNA pseudouridine synthase OS=Loxodonta africana
GN=LOC100658235 PE=3 SV=1
Length = 480
Score = 260 bits (665), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 166/450 (36%), Positives = 224/450 (49%), Gaps = 56/450 (12%)
Query: 1 MATQLSDVDHIATLQARVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRK 60
MA D + L RV+ELE E +L + ++ K E ++GS K R
Sbjct: 1 MAENDIDRNQTEKLVKRVQELEEEVQRLKKE-------QLNNKDTSRREDSSGSRKAKRA 53
Query: 61 SEEKIEKMTGYNTRFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIR 120
+ S H +R+VAL++ Y G + GFAS+ T+E ++F+AL K R
Sbjct: 54 FD-------------FSAHGRRHVALRIAYLGWSYQGFASQENTNNTIEEKLFEALTKTR 100
Query: 121 LLVGDKKESQYSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDY 180
L V ++ S Y RCGRTDKGVS+ GQVI+L LRS+ + + EI Y
Sbjct: 101 L-VESRQTSNYHRCGRTDKGVSAFGQVISLDLRSHFPKDKDSEDFQLKDEANDSAKEIRY 159
Query: 181 VRVLNRVLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEH 240
+LNRVLP DIRIL W P F ARFSCL R Y+YFF + L+I M A K +G H
Sbjct: 160 THILNRVLPPDIRILAWAPVEPAFSARFSCLERTYRYFFPRADLDIAIMSYAAQKYVGTH 219
Query: 241 DFRNFCKMDATN-VHNYRRHITMFEIFPTDVRYGGN------QLWVIKIRGSAFLWHQVR 293
DFRN CKMD N V N++R I ++ G + QL ++ G AFL+HQVR
Sbjct: 220 DFRNLCKMDVANGVINFQRTILSAQVQLVGQSRGEDRWEESFQLCQFEVTGQAFLYHQVR 279
Query: 294 CMVAVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDA 353
CM+A+LFL+G+G+E P +ID LL+ K +KPQY M+ E PLVL C+FE+IK++ +
Sbjct: 280 CMMAILFLIGQGMEKPEIIDELLNIEKNSQKPQYSMAVEFPLVLYDCKFENIKWIYDREV 339
Query: 354 GEALRIHLVNECQTFQLQAAVFHEALLNCVPLLHDQSLPPSRGTTK-------------- 399
E HL Q AV L + + L ++P G
Sbjct: 340 QEFNVTHL----QQLWANHAVKTHMLYSMLQGLDSVAVPCGEGPETDGMMEWRNVKPSVI 395
Query: 400 ----------KKASYVPLMSRPTEPSYEER 419
K +Y PLM RP E R
Sbjct: 396 KQTSAFVEGVKTRTYKPLMDRPKCQGLESR 425
>A5PKS2_XENLA (tr|A5PKS2) LOC100101318 protein OS=Xenopus laevis GN=pus3 PE=2
SV=1
Length = 507
Score = 259 bits (663), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 172/448 (38%), Positives = 228/448 (50%), Gaps = 81/448 (18%)
Query: 5 LSDVDHIATLQARVKELEAENAKLLSQLADSHIHEMEKKLHVSG----EKNTGSIKGNRK 60
+S + + L+ RVKELE EK LH+ G E + G N K
Sbjct: 1 MSQENEVTQLRQRVKELE------------------EKVLHLEGQCRGEGDQGLRHTNPK 42
Query: 61 SEEKIEKMTGYNTRFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIR 120
+E+ ++ + S H KR+VAL++ Y G + GFAS+ + TVE +F AL K R
Sbjct: 43 QKERPQRAFDF-----SAHPKRHVALRLAYLGWGYQGFASQENTKNTVEETVFNALLKTR 97
Query: 121 LLVGDKKESQYSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDY 180
L V ++ S Y RCGRTD+GVS++ QVI+L LR + + + EI Y
Sbjct: 98 L-VESRQTSNYHRCGRTDRGVSALAQVISLDLRCS----------------AEGKPEIRY 140
Query: 181 VRVLNRVLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEH 240
V +LNRVLP DIR+L W P P F ARFSC SR Y+Y F L++ AM+ A L G H
Sbjct: 141 VHILNRVLPPDIRVLSWAPVPPSFSARFSCGSRTYRYLFPCAQLDVEAMDKAARLLEGTH 200
Query: 241 DFRNFCKMDATN-VHNYRRHITMFEI-----FPTDVRYGGNQLWVIKIRGSAFLWHQVRC 294
DFRN CKMD N V N+ R + + P D+ G QL+ ++I G AFL+HQVRC
Sbjct: 201 DFRNLCKMDVANGVLNFTRTVLSARVGPVPEIPGDM--GPFQLYHLQITGLAFLYHQVRC 258
Query: 295 MVAVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAG 354
++ VLFLVG+G E P VI LLD K PRKPQY M+ E PLVL +C F+D++++ +A
Sbjct: 259 IMGVLFLVGQGKEKPEVITELLDVVKNPRKPQYNMAVEFPLVLYNCHFDDVQWVSEKEAQ 318
Query: 355 EALRIHLVNECQTFQLQAAVFHEALL-----------------------NCVPLLHDQSL 391
HL Q Q AV + L C P + D S
Sbjct: 319 SLTVAHL----QRLWTQEAVKTQILFMAIGGLDSIPISLETGQDPVPWNQCNPTVCDLSG 374
Query: 392 PPSRGTTKKKASYVPLMSRPTEPSYEER 419
G + + SY PLM R EER
Sbjct: 375 GLVEGVSAR--SYTPLMKRHLCQGLEER 400
>M3Y5B1_MUSPF (tr|M3Y5B1) tRNA pseudouridine synthase OS=Mustela putorius furo
GN=PUS3 PE=3 SV=1
Length = 480
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 148/365 (40%), Positives = 207/365 (56%), Gaps = 30/365 (8%)
Query: 6 SDVDHIAT--LQARVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRKSEE 63
+D+D T L RV+ELE E +L + A++ +++ N +
Sbjct: 4 NDIDRTQTEKLLKRVQELEQEVQRLKKEQANN---------------KDSNVRENSLAAG 48
Query: 64 KIEKMTGYNTRFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLV 123
K ++ + S H +R+VALK+ Y G + GFAS+ T+E ++F+AL K RL V
Sbjct: 49 KAKRAFDF-----SAHGRRHVALKIAYLGWGYQGFASQENTNNTIEEKLFEALTKTRL-V 102
Query: 124 GDKKESQYSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDYVRV 183
++ S Y RCGRTDKGVS+ GQVI+L LRS+ A+ + + EI Y +
Sbjct: 103 ESRQTSNYHRCGRTDKGVSAFGQVISLDLRSHFLKGRASEDCNVKDDVYDAAKEIRYTHI 162
Query: 184 LNRVLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFR 243
LNRVLP DIR+L W P F ARFSCL R Y+YFF + L+I M A K +G HDFR
Sbjct: 163 LNRVLPPDIRVLAWAPVEPSFSARFSCLERTYRYFFPRADLDILTMNHAAQKYVGTHDFR 222
Query: 244 NFCKMDATN-VHNYRRHITMFEI------FPTDVRYGGNQLWVIKIRGSAFLWHQVRCMV 296
N CKMD N V N++R I ++ + QL ++ G AFL+HQVRCM+
Sbjct: 223 NLCKMDVANGVINFQRTILSAQVQLVGQTLDEETWQEPFQLCQFEVIGQAFLYHQVRCMM 282
Query: 297 AVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAGEA 356
A+LFL+G+G+E P +ID LL+ K P+KPQY M+ E PLVL C+FE+IK++ + E
Sbjct: 283 AILFLIGQGMEKPEIIDELLNVEKNPQKPQYSMAVEFPLVLYDCKFENIKWIYDREVQEF 342
Query: 357 LRIHL 361
HL
Sbjct: 343 NVTHL 347
>G9KJH4_MUSPF (tr|G9KJH4) tRNA pseudouridine synthase (Fragment) OS=Mustela
putorius furo PE=2 SV=1
Length = 479
Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 148/365 (40%), Positives = 207/365 (56%), Gaps = 30/365 (8%)
Query: 6 SDVDHIAT--LQARVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRKSEE 63
+D+D T L RV+ELE E +L + A++ +++ N +
Sbjct: 4 NDIDRTQTEKLLKRVQELEQEVQRLKKEQANN---------------KDSNVRENSLAAG 48
Query: 64 KIEKMTGYNTRFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLV 123
K ++ + S H +R+VALK+ Y G + GFAS+ T+E ++F+AL K RL V
Sbjct: 49 KAKRAFDF-----SAHGRRHVALKIAYLGWGYQGFASQENTNNTIEEKLFEALTKTRL-V 102
Query: 124 GDKKESQYSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDYVRV 183
++ S Y RCGRTDKGVS+ GQVI+L LRS+ A+ + + EI Y +
Sbjct: 103 ESRQTSNYHRCGRTDKGVSAFGQVISLDLRSHFLKGRASEDCNVKDDVYDAAKEIRYTHI 162
Query: 184 LNRVLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFR 243
LNRVLP DIR+L W P F ARFSCL R Y+YFF + L+I M A K +G HDFR
Sbjct: 163 LNRVLPPDIRVLAWAPVEPSFSARFSCLERTYRYFFPRADLDILTMNHAAQKYVGTHDFR 222
Query: 244 NFCKMDATN-VHNYRRHITMFEI------FPTDVRYGGNQLWVIKIRGSAFLWHQVRCMV 296
N CKMD N V N++R I ++ + QL ++ G AFL+HQVRCM+
Sbjct: 223 NLCKMDVANGVINFQRTILSAQVQLVGQTLDEETWQEPFQLCQFEVIGQAFLYHQVRCMM 282
Query: 297 AVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAGEA 356
A+LFL+G+G+E P +ID LL+ K P+KPQY M+ E PLVL C+FE+IK++ + E
Sbjct: 283 AILFLIGQGMEKPEIIDELLNVEKNPQKPQYSMAVEFPLVLYDCKFENIKWIYDREVQEF 342
Query: 357 LRIHL 361
HL
Sbjct: 343 NVTHL 347
>A7SJV8_NEMVE (tr|A7SJV8) tRNA pseudouridine synthase OS=Nematostella vectensis
GN=v1g245761 PE=3 SV=1
Length = 464
Score = 258 bits (659), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 141/319 (44%), Positives = 193/319 (60%), Gaps = 17/319 (5%)
Query: 77 SHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLVGDKKESQYSRCGR 136
S ++ R +AL++ Y G +GFAS+ +++ TVE+ +F AL K LV ++ YSRCGR
Sbjct: 75 SRYNTRRIALRLSYLGWDMHGFASQEKIDNTVEAHLFDALIKA-CLVKSRESCSYSRCGR 133
Query: 137 TDKGVSSVGQVIALYLRSNL-KISGA---NTGSSGEIVEEQHEGEIDYVRVLNRVLPNDI 192
TDKGVS+ GQVI+L +R+NL K G S G + + EI YV +LN+VLP +I
Sbjct: 134 TDKGVSAFGQVISLNVRTNLDKGPGVILRQESSVGRDTKGKTMKEILYVDILNKVLPKEI 193
Query: 193 RILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMDATN 252
R+L W P +DF ARFSC R+YKY F L+I M A KL GEHDFRNFCKMD N
Sbjct: 194 RVLAWAPVELDFDARFSCSYRKYKYLFPSANLDIDLMNLASKKLEGEHDFRNFCKMDVAN 253
Query: 253 -VHNYRRHITMFEIFPTD-----------VRYGGNQLWVIKIRGSAFLWHQVRCMVAVLF 300
V + R+IT F++ + G ++ I GSAFLWHQVRCM+++L
Sbjct: 254 GVIQFTRNITSFKVQKVSNATYSAPGENKAKQRGYEMCEAVICGSAFLWHQVRCMMSILL 313
Query: 301 LVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAGEALRIH 360
+VG+GLE P VID LLD K P++PQY M+SE+PLVL C +E I ++ E++ +
Sbjct: 314 MVGQGLEQPEVIDWLLDIEKCPQRPQYNMASELPLVLYDCVYEGITWIYDPQVLESVTKN 373
Query: 361 LVNECQTFQLQAAVFHEAL 379
L T+ +A + E L
Sbjct: 374 LQQLWNTYATKATLAQELL 392
>L5KEL5_PTEAL (tr|L5KEL5) tRNA pseudouridine synthase OS=Pteropus alecto
GN=PAL_GLEAN10007637 PE=3 SV=1
Length = 481
Score = 257 bits (657), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 155/406 (38%), Positives = 222/406 (54%), Gaps = 36/406 (8%)
Query: 6 SDVDHIAT--LQARVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRKSEE 63
+D+D I T L RV+ELE E +L ++ A++ + E ++G K R +
Sbjct: 4 NDIDRIQTEKLLKRVQELEQEVQRLKNKQANTKDSNVR-------ENSSGVGKAKRAFD- 55
Query: 64 KIEKMTGYNTRFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLV 123
S H +R+VALK+ Y G + GFAS+ T+E ++F+AL K RL +
Sbjct: 56 ------------FSAHGRRHVALKIAYLGWGYQGFASQENTNNTIEEKLFEALTKTRL-I 102
Query: 124 GDKKESQYSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEG--EIDYV 181
++ S Y RCGRTDKGVS+ GQVI+L LRS+ + +E ++ EI Y
Sbjct: 103 ESRQTSNYHRCGRTDKGVSAFGQVISLDLRSHF--PKGRDSEDFNLTDEVNDAAKEIRYT 160
Query: 182 RVLNRVLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHD 241
+LNRVLP DIR+L W F ARFSCL R Y+YFF + L+I M A K +G HD
Sbjct: 161 HILNRVLPPDIRVLAWASVEPSFSARFSCLERTYRYFFPRADLDIVTMNCAAQKYVGTHD 220
Query: 242 FRNFCKMDATN-VHNYRRHITMFEI------FPTDVRYGGNQLWVIKIRGSAFLWHQVRC 294
FRN CKMD N V N+ R I ++ + Q+ ++ G AFL+HQVRC
Sbjct: 221 FRNLCKMDVANGVINFHRTILSAQVQLVGQGLAEERWQEPFQICQFEVTGQAFLYHQVRC 280
Query: 295 MVAVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAG 354
M+A+LFL+G+G+E P +ID LL+ K P+KPQY M+ E PLVL C+FE+IK++ +
Sbjct: 281 MMAILFLIGQGMEKPEIIDELLNVEKNPQKPQYSMAVEFPLVLYDCKFENIKWIYDREVH 340
Query: 355 EALRIHLVNECQTFQLQAAVFHEAL--LNCVPLLHDQSLPPSRGTT 398
E HL + ++ + + L L+ V + P+ GTT
Sbjct: 341 EFNVTHLQQQWANQAVKTHILYSMLQGLDSVAVPCGTEERPASGTT 386
>I3KH32_ORENI (tr|I3KH32) tRNA pseudouridine synthase (Fragment) OS=Oreochromis
niloticus GN=LOC100704327 PE=3 SV=1
Length = 447
Score = 257 bits (656), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 167/446 (37%), Positives = 229/446 (51%), Gaps = 72/446 (16%)
Query: 5 LSDVDHIATLQARVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRKSEEK 64
+SDV L R+KELEAE KL SQL K GN S +K
Sbjct: 2 MSDV-----LIQRIKELEAELEKLRSQL-----------------KEDCKSDGNAGSSKK 39
Query: 65 IEKMTGYNTRF-MSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLV 123
K +G + F S H +R+VAL++ Y G + GFA + + TVE+ +F+AL K RL +
Sbjct: 40 ERKKSGKDRPFDFSAHPRRHVALRLAYLGWAYQGFAVQENTDNTVEARLFEALLKTRL-I 98
Query: 124 GDKKESQYSRCGRTDKGVSSVGQVIALYLRS-------------NLKISGANTGSSGEIV 170
D++ S Y RCGRTDKGVS+ QVI + LRS N+ +S T S+
Sbjct: 99 QDRQSSNYHRCGRTDKGVSAFSQVITIDLRSTQFCAGLGITLPENVDVSTKATSSA---- 154
Query: 171 EEQHEGEIDYVRVLNRVLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAME 230
E+ YV++LNRVLP DIR+L W P F ARF C SR Y+Y+F + L++ M
Sbjct: 155 ----TSELPYVKMLNRVLPQDIRVLDWAPVAEGFSARFDCQSRTYRYYFPRGSLDVALMA 210
Query: 231 SAGIKLIGEHDFRNFCKMDATN-VHNYRRHITMFEIFPTDVRYGGN----QLWVIKIRGS 285
A + G HDFRN CKMD N V + R I + P ++ + L++ +I+G
Sbjct: 211 EAAKRYEGTHDFRNLCKMDVGNGVLQFERTILSATVKPAQPQHASSTDQYDLFIFEIKGL 270
Query: 286 AFLWHQVRCMVAVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDI 345
AFL+HQVRCM+AVL L+G+ LE+ ++I+ LLD PRKPQY M+ + PLVL C FE +
Sbjct: 271 AFLYHQVRCMMAVLLLIGQKLEALDIINQLLDVENNPRKPQYSMAVDYPLVLYDCHFEGL 330
Query: 346 KFMCSSDAGEALRIHLVNECQTFQLQAAVFHEALLNCVPLLHDQSLPPSRGT-------- 397
+ S+ G + L Q Q+ V L + L D RGT
Sbjct: 331 SWTRESEEGGFVLAAL----QQHWTQSTVKAHVLQGMIQGLED------RGTGAVSSNHC 380
Query: 398 ----TKKKASYVPLMSRPTEPSYEER 419
++ +Y PL+ RP S E R
Sbjct: 381 WLVEGSRQRNYRPLLERPCCESLESR 406
>H2LWW2_ORYLA (tr|H2LWW2) tRNA pseudouridine synthase (Fragment) OS=Oryzias
latipes GN=LOC101173982 PE=3 SV=1
Length = 462
Score = 256 bits (654), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 163/423 (38%), Positives = 231/423 (54%), Gaps = 37/423 (8%)
Query: 13 TLQARVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRKSEEKIEKMTGYN 72
+L R+KELEAE KL SQL +S +G++ + +GN +E+ K +G
Sbjct: 5 SLIGRIKELEAELEKLKSQLKESR---------EAGDRGS---EGNCTRKER--KKSGKE 50
Query: 73 TRF-MSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLVGDKKESQY 131
F + H +R+VAL++ Y G + GFA + + TVE+ +F+AL K RL + D++ S Y
Sbjct: 51 RPFDFAAHPRRHVALRLAYLGWAYQGFAVQENTDNTVEARLFEALLKTRL-IQDRQSSNY 109
Query: 132 SRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGE----IVEEQHEGEIDYVRVLNRV 187
RCGRTDKGVS+ QVI + LRS G + I + E+ YV++LNRV
Sbjct: 110 HRCGRTDKGVSAFSQVITIDLRSTQFCGGLGVTVPEKVDPSIKSKAASSELPYVKMLNRV 169
Query: 188 LPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCK 247
LP DIRIL P F ARF C SR Y+Y+F + L++ ME A + G HDFRN CK
Sbjct: 170 LPQDIRILDCAPVAEGFSARFDCQSRTYRYYFPRGSLDVALMEDAAKRYEGTHDFRNLCK 229
Query: 248 MDATN-VHNYRRHITMFEIFPTDVRYGGN----QLWVIKIRGSAFLWHQVRCMVAVLFLV 302
MD N V + R I I P + + L+V +++G AFL+HQVRCM+AVL L+
Sbjct: 230 MDVGNGVLQFERTILSATIRPMWSQQASSMDQYSLFVFEVKGLAFLYHQVRCMMAVLLLI 289
Query: 303 GKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAGEALRIHLV 362
G+ LE P +I LLD PRKPQY M+ + PLVL C FE + + ++ +++
Sbjct: 290 GQKLEDPQIISQLLDVENNPRKPQYSMAVDYPLVLHHCHFEGLSWQQDTEELN----YVM 345
Query: 363 NECQTFQLQAAVFHEALLNCVPLLHDQSLPPS------RGTTKKKASYVPLMSRPTEPSY 416
+ Q +Q+AV + L + L D+ S G+ +KK Y PL+ RP S
Sbjct: 346 SSLQQHWIQSAVKAQVLQEMIRDLKDRGGVSSNHCWLVEGSRQKK--YRPLLERPCCESL 403
Query: 417 EER 419
E R
Sbjct: 404 ESR 406
>Q28GS4_XENTR (tr|Q28GS4) Pseudouridine synthase 3 OS=Xenopus tropicalis GN=pus3
PE=2 SV=1
Length = 505
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 171/445 (38%), Positives = 228/445 (51%), Gaps = 72/445 (16%)
Query: 5 LSDVDHIATLQARVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKN-TGSIKGNRKSEE 63
+S D + L+ RV+ELE + +L Q GE G ++G +++
Sbjct: 1 MSQEDEVTQLRQRVRELEDKVLRLEEQ--------------CRGEAPPQGVVQGPSHTKQ 46
Query: 64 KIEKMTGYNTRFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLV 123
K ++ S H K++VAL++ Y G + GFAS+ + TVE +F AL K RL V
Sbjct: 47 KQRLQRAFD---FSAHPKQHVALRLAYLGWGYQGFASQENTKNTVEETVFNALIKTRL-V 102
Query: 124 GDKKESQYSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDYVRV 183
++ S Y RCGRTD+GVS++GQVI+L LR SGE + EI YV +
Sbjct: 103 ESRQTSNYHRCGRTDRGVSALGQVISLDLRC-----------SGE-----GKPEIRYVHI 146
Query: 184 LNRVLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFR 243
LNRVLP DIR+L W P F ARFSC SR Y+Y F L++ AM+ A L G HDFR
Sbjct: 147 LNRVLPPDIRVLSWAAVPPSFSARFSCRSRTYRYLFSCAQLDVEAMDKAARLLEGTHDFR 206
Query: 244 NFCKMDATN-VHNYRRHITMFEI-----FPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVA 297
N CKMD N V N+ R + + P D+ G QL+ ++I G AFL+HQVRC++
Sbjct: 207 NLCKMDVANGVMNFIRTVLSARVEPVPEIPGDM--GPFQLYRLQITGLAFLYHQVRCIMG 264
Query: 298 VLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAGEAL 357
VLFLVG+G E P VI LLD K PRKPQY M+ E PLVL +C F+D++++ +A
Sbjct: 265 VLFLVGQGKEKPEVITELLDVAKNPRKPQYNMAVEFPLVLYNCHFDDVQWVSEKEAQSLT 324
Query: 358 RIHLVNECQTFQLQAAVFHEALLN-----------------------CVPLLHDQSLPPS 394
HL Q Q AV + L C P + D S
Sbjct: 325 VSHL----QRLWTQEAVKTQILFMAIGGLDSIPISLETGQDLVPWNLCKPTVCDLSGGLV 380
Query: 395 RGTTKKKASYVPLMSRPTEPSYEER 419
G + + SY PLM R EER
Sbjct: 381 EGVSAR--SYTPLMKRHLCQGLEER 403
>H2U851_TAKRU (tr|H2U851) tRNA pseudouridine synthase OS=Takifugu rubripes
GN=LOC101061470 PE=3 SV=1
Length = 433
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 161/423 (38%), Positives = 225/423 (53%), Gaps = 41/423 (9%)
Query: 14 LQARVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRKSEEKIEKMTGYNT 73
L RVKELEAE KL SQL D + +VS + K G
Sbjct: 5 LMQRVKELEAELEKLKSQLKDPCESQCTPNDNVSTRR----------------KKAGKRP 48
Query: 74 RFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLVGDKKESQYSR 133
S H +R+VAL++ Y G + GFA + TVE+ +F+AL K L+ D++ S Y R
Sbjct: 49 LDFSAHPRRHVALRLAYLGWSYQGFAVQENTGHTVEARLFEALQKT-CLIQDRQTSNYHR 107
Query: 134 CGRTDKGVSSVGQVIALYLRSN-----LKISGANTGSSGEIVEEQHEGEIDYVRVLNRVL 188
CGRTDKGVS+ QVI + LRS L + T +G + E+ YV++LNRVL
Sbjct: 108 CGRTDKGVSAFSQVITIDLRSTQFCGGLGVRLPETVDAGAKTKAA-VSELPYVKMLNRVL 166
Query: 189 PNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKM 248
P DIRIL W PA F ARF C SR Y+Y+F + LN+ M A + G+HDFRN CKM
Sbjct: 167 PQDIRILDWAPAEEGFSARFDCQSRTYRYYFPRGALNLELMADAAKRYEGKHDFRNLCKM 226
Query: 249 DATN-VHNYRRHITMFEIFPTDVRYGGN----QLWVIKIRGSAFLWHQVRCMVAVLFLVG 303
D N V + R I I P + + + +++ +++G AFL+HQVRCM+A+L L+G
Sbjct: 227 DVGNGVLQFERTILSASIRPVNPIHASSTDQYDIFIFEVKGLAFLYHQVRCMMALLLLIG 286
Query: 304 KGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAGEALRIHLVN 363
+ LE+P +I+ LLD PRKPQY M+ + PLVL C FE + + S+D H+++
Sbjct: 287 QELEAPEIINQLLDVQSNPRKPQYSMAVDYPLVLHDCHFEGLDWQQSNDEVN----HVLS 342
Query: 364 ECQTFQLQAAVFHEALLNCVPLLHDQSLPPS-------RGTTKKKASYVPLMSRPTEPSY 416
Q Q+AV L + L + + S GT ++ +Y PL+ RP S
Sbjct: 343 TLQHHWTQSAVRTHVLHGMIKGLENTAGGASSDHCWLIEGTRQR--TYRPLLERPRCESL 400
Query: 417 EER 419
+ R
Sbjct: 401 QSR 403
>I1PBT8_ORYGL (tr|I1PBT8) tRNA pseudouridine synthase OS=Oryza glaberrima PE=3
SV=1
Length = 353
Score = 255 bits (651), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 161/405 (39%), Positives = 211/405 (52%), Gaps = 98/405 (24%)
Query: 11 IATLQARVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRKSEEKIEK--M 68
+A L+ RV+ELE EN +L + + S + S+ +++ +K K
Sbjct: 19 VAALRLRVQELERENQRLGKIASRCTCGRSKDDSAASSPVVSESLSSSKQEPQKNVKSHC 78
Query: 69 TGYNTRFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLVGDKKE 128
G +SH KR +ALK+MYFG+RFYGFASEA EPTVESEIFKAL + +LLVG +KE
Sbjct: 79 RGCQVGVVSHCPKRLIALKIMYFGQRFYGFASEAHTEPTVESEIFKALERAKLLVGSRKE 138
Query: 129 SQYSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDYVRVLNRVL 188
S YSRCGRTDKGVS+ GQVI+L+LRSN+K + ++D VL
Sbjct: 139 SCYSRCGRTDKGVSATGQVISLFLRSNIK-----------------DAKLD-------VL 174
Query: 189 PNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKM 248
N DF ARFSCL REYKY FWK LNI M+ A +K IGEH
Sbjct: 175 DNK---------SGDFLARFSCLGREYKYLFWKGNLNISEMQKAALKFIGEH-------- 217
Query: 249 DATNVHNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLES 308
+YR M ++
Sbjct: 218 ------DYRNFCKM--------------------------------------------DA 227
Query: 309 PNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAGEALRIHLVNECQTF 368
N++D LLD KTPRKPQY M+SE+PL+L+SC F+++ FMCSS+A +AL HL +E +
Sbjct: 228 ANIVDSLLDITKTPRKPQYKMASEIPLILRSCLFDEVNFMCSSEASQALIEHLKDEYHQY 287
Query: 369 QLQAAVFHEALLNCVPLLHDQSLPPSRGTTKKKASYVPLMSRPTE 413
LQAA+F EA L+C+ P KK +++PLMSR TE
Sbjct: 288 MLQAAIFCEA-LSCLCSPEPDPFEPRH----KKRNHIPLMSRQTE 327
>Q6P815_XENTR (tr|Q6P815) Pseudouridylate synthase 3 OS=Xenopus tropicalis
GN=pus3 PE=2 SV=1
Length = 505
Score = 255 bits (651), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 171/445 (38%), Positives = 228/445 (51%), Gaps = 72/445 (16%)
Query: 5 LSDVDHIATLQARVKELEAENAKLLSQLADSHIHEMEKKLHVSGE-KNTGSIKGNRKSEE 63
+S D + L+ RV+ELE + +L Q GE G ++G +++
Sbjct: 1 MSQEDEVTQLRQRVRELEDKVLRLEEQ--------------CRGEAPPQGVVQGPSHTKQ 46
Query: 64 KIEKMTGYNTRFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLV 123
K ++ S H K++VAL++ Y G + GFAS+ + TVE +F AL K RL V
Sbjct: 47 KQRLQRAFD---FSAHPKQHVALRLAYLGWGYQGFASQENTKNTVEETVFNALIKTRL-V 102
Query: 124 GDKKESQYSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDYVRV 183
++ S Y RCGRTD+GVS++GQVI+L LR SGE + EI YV +
Sbjct: 103 ESRQTSNYHRCGRTDRGVSALGQVISLDLRC-----------SGE-----GKPEIRYVHI 146
Query: 184 LNRVLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFR 243
LNRVLP DIR+L W P F ARFSC SR Y+Y F L++ AM+ A L G HDFR
Sbjct: 147 LNRVLPPDIRVLSWAAVPPSFSARFSCRSRTYRYLFPCAQLDVEAMDKAARLLEGTHDFR 206
Query: 244 NFCKMDATN-VHNYRRHITMFEI-----FPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVA 297
N CKMD N V N+ R + + P D+ G QL+ ++I G AFL+HQVRC++
Sbjct: 207 NLCKMDVANGVMNFIRTVLSARVEPVPEIPGDM--GPFQLYRLQITGLAFLYHQVRCIMG 264
Query: 298 VLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAGEAL 357
VLFLVG+G E P VI LLD K PRKPQY M+ E PLVL +C F+D++++ +A
Sbjct: 265 VLFLVGQGKEKPEVITELLDVAKNPRKPQYNMAVEFPLVLYNCHFDDVQWVSEKEAQSLT 324
Query: 358 RIHLVNECQTFQLQAAVFHEALLN-----------------------CVPLLHDQSLPPS 394
HL Q Q AV + L C P + D S
Sbjct: 325 VSHL----QRLWTQEAVKTQILFMAIGGLDYIPISLETGQDLVPWNLCKPTVCDLSGGLV 380
Query: 395 RGTTKKKASYVPLMSRPTEPSYEER 419
G + + SY PLM R EER
Sbjct: 381 EGVSAR--SYTPLMKRHLCQGLEER 403
>F6ZXE9_XENTR (tr|F6ZXE9) Uncharacterized protein OS=Xenopus tropicalis GN=pus3
PE=3 SV=1
Length = 508
Score = 255 bits (651), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 170/445 (38%), Positives = 227/445 (51%), Gaps = 72/445 (16%)
Query: 5 LSDVDHIATLQARVKELEAENAKLLSQLADSHIHEMEKKLHVSGE-KNTGSIKGNRKSEE 63
+S D + L+ RV+ELE + +L Q GE G ++G +++
Sbjct: 1 MSQEDEVTQLRQRVRELEDKVLRLEEQ--------------CRGEAPPQGGVQGPSHTKQ 46
Query: 64 KIEKMTGYNTRFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLV 123
K ++ S H K++VAL++ Y G + GFAS+ + TVE +F AL K RL V
Sbjct: 47 KQRPQRAFD---FSAHPKQHVALRLAYLGWGYQGFASQENTKNTVEETVFNALIKTRL-V 102
Query: 124 GDKKESQYSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDYVRV 183
++ S Y RCGRTD+GVS++GQVI+L LR SG+ + EI YV +
Sbjct: 103 ESRQTSNYHRCGRTDRGVSALGQVISLDLRC-----------SGD-----GKPEIRYVHI 146
Query: 184 LNRVLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFR 243
LNRVLP DIR+L W P F ARFSC SR Y+Y F L++ AM+ A L G HDFR
Sbjct: 147 LNRVLPPDIRVLSWAAVPPSFSARFSCRSRTYRYLFPCAQLDVEAMDKAARLLEGTHDFR 206
Query: 244 NFCKMDATN-VHNYRRHITMFEI-----FPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVA 297
N CKMD N V N+ R + + P D+ G QL+ ++I G AFL+HQVRC++
Sbjct: 207 NLCKMDVANGVMNFIRTVLSARVEPVPEIPGDM--GPFQLYRLQITGLAFLYHQVRCIMG 264
Query: 298 VLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAGEAL 357
VLFLVG+G E P VI LLD K PRKPQY M+ E PLVL C F+D++++ +A
Sbjct: 265 VLFLVGQGKEKPEVITELLDVAKNPRKPQYNMAVEFPLVLYDCHFDDVQWVSEKEAQSLT 324
Query: 358 RIHLVNECQTFQLQAAVFHEALLN-----------------------CVPLLHDQSLPPS 394
HL Q Q AV + L C P + D S
Sbjct: 325 VSHL----QRLWTQEAVKTQMLFMAIGGLDSIPISLETGQDLVPWNLCKPTVCDLSGGLV 380
Query: 395 RGTTKKKASYVPLMSRPTEPSYEER 419
G + + SY PLM R EER
Sbjct: 381 EGVSAR--SYTPLMKRHLCQGLEER 403
>E9GYG4_DAPPU (tr|E9GYG4) tRNA pseudouridine synthase OS=Daphnia pulex
GN=DAPPUDRAFT_323292 PE=3 SV=1
Length = 429
Score = 255 bits (651), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 149/349 (42%), Positives = 201/349 (57%), Gaps = 11/349 (3%)
Query: 79 HSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLVGDKKESQYSRCGRTD 138
++KR+V L+V Y G + GF + E T+E+E+FKAL K RLL ++ S Y RCGRTD
Sbjct: 64 YAKRHVLLQVAYVGWDYAGFVVQEHTEKTIEAEVFKALEKTRLL-ESRETSNYHRCGRTD 122
Query: 139 KGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDYVRVLNRVLPNDIRILGWC 198
KGVSS GQ I++ LRSNL G + + EIDYV +LN+VLP +IR++ W
Sbjct: 123 KGVSSFGQAISIDLRSNLSEGKGVFIPDGHQAKVGNTVEIDYVGILNKVLPPEIRMIAWA 182
Query: 199 PAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMDATN-VHNYR 257
P ARF C R Y Y+F K LNI M A LIGEHDFRN CKMD N V +
Sbjct: 183 PINQSLSARFDCRQRTYHYYFPKANLNIERMRVASQSLIGEHDFRNLCKMDVGNGVIKFD 242
Query: 258 RHITMFEIFPTDVRYGGNQLWV-IKIRGSAFLWHQVRCMVAVLFLVGKGLESPNVIDMLL 316
R I +I D + + +K+ G AFLWHQVRC+VA+LFL+G+G E +I LL
Sbjct: 243 RRIMDIQIEAIDDDKANSYSMIRLKLIGQAFLWHQVRCIVAILFLIGQGKEETTIIQELL 302
Query: 317 DTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAGEALRIHLVNECQTF----QLQA 372
+ + PRKPQY M+SE+PL L +C + D DA E+LR ++++ QT ++A
Sbjct: 303 NVERNPRKPQYGMASEIPLNLFTCTYSDDDCQWIYDA-ESLR-YVISGYQTLWAENSIKA 360
Query: 373 AVFHEALLNCVPLLHDQSLPPSRGTTK--KKASYVPLMSRPTEPSYEER 419
+ E L + LL D+ +G + +Y+PLM R S EER
Sbjct: 361 TMIKEMLNSLEGLLDDKIESQLKGLVYGVEPKTYLPLMERQKCESLEER 409
>K7EAA9_ORNAN (tr|K7EAA9) Uncharacterized protein OS=Ornithorhynchus anatinus
GN=PUS3 PE=3 SV=1
Length = 504
Score = 255 bits (651), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 153/411 (37%), Positives = 221/411 (53%), Gaps = 38/411 (9%)
Query: 14 LQARVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRKSEEKIEKMTGYNT 73
L+ RV+ELE E +L AD + + G +K +++ Y
Sbjct: 15 LRQRVQELEREVQRLQRGRADG--------------REDPAAGGAKKRQQRPFDFGAYG- 59
Query: 74 RFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLVGDKKESQYSR 133
+R+VAL++ Y G + GFAS+ T+E +F+AL K RL + ++ + Y R
Sbjct: 60 -------RRHVALRIAYLGWGYQGFASQENTNNTIEERLFEALTKTRL-IERRQTANYHR 111
Query: 134 CGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDYVRVLNRVLPNDIR 193
CGRTDKGVS+ GQVI+L LRS G S + ++ + EI Y +LNRVLP DIR
Sbjct: 112 CGRTDKGVSAFGQVISLDLRSQTVRGGQEEEGSKDRMDART-AEIRYTHILNRVLPPDIR 170
Query: 194 ILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMDATN- 252
+L W P F ARF+CL R Y+YFF + L++ AM+ A K +G HDFRN CKMD N
Sbjct: 171 VLAWAPVGSGFSARFNCLQRTYRYFFPRADLDLEAMDRAAQKYVGTHDFRNLCKMDVANG 230
Query: 253 VHNYRRHITMFEIFPTDV-----RYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLE 307
V +++R I ++ D R +L ++ G AFL+HQVRCM+A+LFLVG+ +E
Sbjct: 231 VTSFQRTILSAQVRRVDQSEETDRRDPFRLCQFEVTGQAFLYHQVRCMMAILFLVGQRME 290
Query: 308 SPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAGEALRIHLVNECQT 367
P VID LLD K PRKPQY M+ E+PLVL C+FE ++++ + E HL Q
Sbjct: 291 GPEVIDELLDVEKNPRKPQYSMAVELPLVLYDCQFEKLEWIYDREVQEFNVRHL----QQ 346
Query: 368 FQLQAAVFHEALLNCVPLLHDQSLPPSRGTTKKKASYVPLMSRPTEPSYEE 418
AV + L + + L + P G+ + P+ R P++ +
Sbjct: 347 LWASHAVQTQLLFSMLQGLDSAPVAPGPGS----GTDGPVRWRDVRPAFRQ 393
>B7Q752_IXOSC (tr|B7Q752) tRNA pseudouridine synthase (Fragment) OS=Ixodes
scapularis GN=IscW_ISCW011539 PE=3 SV=1
Length = 398
Score = 254 bits (649), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 152/364 (41%), Positives = 198/364 (54%), Gaps = 37/364 (10%)
Query: 81 KRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLVGDKKE-SQYSRCGRTDK 139
KR+VAL+ +Y G + G+ + TVE+ +F+AL + RLL D +E S Y RCGRTDK
Sbjct: 1 KRHVALRFLYLGWNYDGYVVQEDTANTVEAALFQALQRTRLL--DLRETSNYHRCGRTDK 58
Query: 140 GVSSVGQVIALYLRSNLKISGANTGSSGE----IVEEQHEGEIDYVRVLNRVLPNDIRIL 195
GVS+ QVI++ LRSNL T S ++ E+DYV++LN VLP DIR+L
Sbjct: 59 GVSAFSQVISIDLRSNLTEGPEGTAPSARSIHSVISVARSTELDYVKILNGVLPPDIRVL 118
Query: 196 GWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMDATN-VH 254
W PA F ARF C +R Y+YF K L + M A L+GEHDFRN CKMD N V
Sbjct: 119 AWAPAEPSFSARFDCQARTYRYFLPKGNLVVQRMREAAKLLVGEHDFRNLCKMDVGNGVT 178
Query: 255 NYRRHITMFEIFP----TDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLESPN 310
Y R I E++ D G Q+ ++I G AFLWHQVRC+VA+L LVG+GLE P
Sbjct: 179 RYVRRILSTELYDGEPEGDGGSSGYQMLCLEIVGQAFLWHQVRCIVAILLLVGQGLEEPE 238
Query: 311 VIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAGEALRIHLVNECQTFQL 370
V+ LLD P KPQY M+SE+PLVL C+FE + + A+ HL ++
Sbjct: 239 VVSKLLDVEAHPCKPQYGMASEIPLVLYDCQFEGLDWRYDVAELTAVSKHLQKLWMHERV 298
Query: 371 QAAVFH---------------EALLNCVPLLHDQSLPPSRGTTKKKASYVPLMSRPTEPS 415
++ + E L C PLL S P +R Y PL+ RP S
Sbjct: 299 KSEMIRSMLKDIAGLPCMAGTEVLSQCDPLL---SGPTAR-------VYRPLLQRPVCDS 348
Query: 416 YEER 419
EER
Sbjct: 349 LEER 352
>F6UBX4_MONDO (tr|F6UBX4) tRNA pseudouridine synthase OS=Monodelphis domestica
GN=PUS3 PE=3 SV=2
Length = 449
Score = 254 bits (648), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 165/449 (36%), Positives = 229/449 (51%), Gaps = 59/449 (13%)
Query: 7 DVDHIATLQARVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRKSEEKIE 66
+ + TL R++ELE E +L + A+ K + +IKG+ +E
Sbjct: 7 ETNQTETLLKRIQELEREVQRLQQEQAN---------------KRSPNIKGDSSTEVGKP 51
Query: 67 KMTGYNTRFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLVGDK 126
K S + +R+VALK+ Y G + GFAS+ T+E ++F+AL K RL V +
Sbjct: 52 KKRQQRAFDFSAYGQRHVALKIAYLGWGYQGFASQENTNNTIEEKLFEALTKTRL-VESR 110
Query: 127 KESQYSRCGRTDKGVSSVGQVIALYLRSNL-KISGANTGSSGEIVEEQHEGEIDYVRVLN 185
+ S Y RCGRTDKGVS+ GQVI+L LRS L + + + V + E EI Y +LN
Sbjct: 111 QTSNYHRCGRTDKGVSAFGQVISLNLRSQLPRDKDPEDKNLKDTVNDSVE-EICYTHILN 169
Query: 186 RVLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNF 245
RVLP DIR+L W F ARFSCL R Y+YFF L+I AM A K +G HDFRN
Sbjct: 170 RVLPPDIRVLAWATVESSFSARFSCLERTYRYFFPCANLDIEAMNDAAQKYVGTHDFRNL 229
Query: 246 CKMDATN-VHNYRRHITMFEIFPTDVRYGGN----------QLWVIKIRGSAFLWHQVRC 294
CKMD N V N++R I ++ V +G QL ++ G AFL+HQVRC
Sbjct: 230 CKMDVANGVINFQRTILSAKV--QLVAFGSPEEKLQQQESFQLCQFEVIGQAFLYHQVRC 287
Query: 295 MVAVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAG 354
M+A+LFL+G+ +E +ID LL+ K P+KPQY M+ E PLVL C+FE+IK++ +
Sbjct: 288 MMAILFLIGQRMEKAEIIDELLNIEKNPQKPQYSMAVEFPLVLYDCKFENIKWIYDREVQ 347
Query: 355 EALRIHLVNECQTFQLQAAVFHEALLNCVPLLHDQSLPPSRGTTK--------------- 399
E HL Q AV L + + L ++ P G+ +
Sbjct: 348 EFNVTHL----QQLWASYAVKTHMLYSMLQGLDSVAIYPGSGSKRNEVIQWKDVKPCIQK 403
Query: 400 ---------KKASYVPLMSRPTEPSYEER 419
K +Y PL+ RP E R
Sbjct: 404 QISAFVEGVKTRTYKPLLDRPRCEGLESR 432
>F2UFZ2_SALS5 (tr|F2UFZ2) tRNA pseudouridine synthase OS=Salpingoeca sp. (strain
ATCC 50818) GN=PTSG_06496 PE=3 SV=1
Length = 460
Score = 253 bits (647), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 137/314 (43%), Positives = 197/314 (62%), Gaps = 17/314 (5%)
Query: 59 RKSEEKIEKMTGYNTRFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAK 118
RKS +K + ++ S +SKR +ALKV Y G++++G A + T+E+ +F+AL K
Sbjct: 41 RKSGKKSKPQKPFD---FSRYSKRKIALKVAYLGEKYHGLAIQISAPDTIEAHLFEALEK 97
Query: 119 IRLLVGDKKESQYSRCGRTDKGVSSVGQVIALYLRSNL-KISGANTGSSGEIVEEQHEG- 176
+L V D K + YSRCGRTDKGVS+ QV++L +RSNL + G + S E +++ +
Sbjct: 98 SKL-VEDIKTADYSRCGRTDKGVSAYCQVVSLVVRSNLNECRGFISKPSVEPAKKKAKAT 156
Query: 177 --EIDYVRVLNRVLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGI 234
E+DY ++LN +LP +IR++ W DF ARFSC +R YKYFF + ++ AM++A
Sbjct: 157 VDELDYTKILNGLLPPEIRVVDWGAVDTDFSARFSCNARHYKYFFHRANMDTAAMQAACD 216
Query: 235 KLIGEHDFRNFCKMD-ATNVHNYRRHITMFEIFPTDV-------RYGGNQLWVIKIRGSA 286
L+GEHDFRNFCK D A V N+ R I + P ++ G LW I G A
Sbjct: 217 HLVGEHDFRNFCKADVAGGVTNFVRTIKEARVCPAEIGDASVHSSDGDFDLWEFNIIGHA 276
Query: 287 FLWHQVRCMVAVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIK 346
FLWHQVRCM+AVLF+VG+G E P ++ LL+ ++ KPQY+M+SE+PLVL C+F+ I
Sbjct: 277 FLWHQVRCMMAVLFMVGRGDEQPGMVRHLLNIDECTHKPQYVMASELPLVLYDCKFDGID 336
Query: 347 FMCSSDAGEALRIH 360
+ +D A RIH
Sbjct: 337 W-SGNDEQHAARIH 349
>I3KH33_ORENI (tr|I3KH33) tRNA pseudouridine synthase (Fragment) OS=Oreochromis
niloticus GN=LOC100704327 PE=3 SV=1
Length = 440
Score = 253 bits (647), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 164/454 (36%), Positives = 233/454 (51%), Gaps = 72/454 (15%)
Query: 5 LSDVDHIATLQARVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRKSEEK 64
+SDV L R+KELEAE KL SQ GN S +K
Sbjct: 9 MSDV-----LIQRIKELEAELEKLRSQ-------------------EDCKSDGNAGSSKK 44
Query: 65 IEKMTGYNTRF-MSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLV 123
K +G + F S H +R+VAL++ Y G + GFA + + TVE+ +F+AL K R L+
Sbjct: 45 ERKKSGKDRPFDFSAHPRRHVALRLAYLGWAYQGFAVQENTDNTVEARLFEALLKTR-LI 103
Query: 124 GDKKESQYSRCGRTDKGVSSVGQVIALYLRS-------------NLKISGANTGSSGEIV 170
D++ S Y RCGRTDKGVS+ QVI + LRS N+ +S T S+
Sbjct: 104 QDRQSSNYHRCGRTDKGVSAFSQVITIDLRSTQFCAGLGITLPENVDVSTKATSSA---- 159
Query: 171 EEQHEGEIDYVRVLNRVLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAME 230
E+ YV++LNRVLP DIR+L W P F ARF C SR Y+Y+F + L++ M
Sbjct: 160 ----TSELPYVKMLNRVLPQDIRVLDWAPVAEGFSARFDCQSRTYRYYFPRGSLDVALMA 215
Query: 231 SAGIKLIGEHDFRNFCKMDATN-VHNYRRHITMFEIFPTDVRYGGN----QLWVIKIRGS 285
A + G HDFRN CKMD N V + R I + P ++ + L++ +I+G
Sbjct: 216 EAAKRYEGTHDFRNLCKMDVGNGVLQFERTILSATVKPAQPQHASSTDQYDLFIFEIKGL 275
Query: 286 AFLWHQVRCMVAVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDI 345
AFL+HQVRCM+AVL L+G+ LE+ ++I+ LLD PRKPQY M+ + PLVL C FE +
Sbjct: 276 AFLYHQVRCMMAVLLLIGQKLEALDIINQLLDVENNPRKPQYSMAVDYPLVLYDCHFEGL 335
Query: 346 KFMCSSDAG----EALRIHLV-NECQTFQLQAAV--FHEALLNCVPLLHDQSLPPSRGTT 398
+ S+ G AL+ H + + LQ + + ++ C+ L+ L +T
Sbjct: 336 SWTRESEEGGFVLAALQQHWTQSTVKAHVLQGMIQGLEDRVMFCIILVRTGKLSHCSSST 395
Query: 399 -------------KKKASYVPLMSRPTEPSYEER 419
++ +Y PL+ RP S E R
Sbjct: 396 GAVSSNHCWLVEGSRQRNYRPLLERPCCESLESR 429
>L7MME1_9ACAR (tr|L7MME1) tRNA pseudouridine synthase (Fragment) OS=Rhipicephalus
pulchellus PE=2 SV=1
Length = 439
Score = 253 bits (646), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 158/439 (35%), Positives = 221/439 (50%), Gaps = 50/439 (11%)
Query: 15 QARVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRKSEEKIEKMTGYNTR 74
Q R E + L QL + E +KL + + ++ +S++K +K
Sbjct: 8 QHRTNREEKATEEQLLQLEKPALVERIRKLQI----HVQQLQNLLQSKDKPQKARPVKPF 63
Query: 75 FMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLVGDKKESQYSRC 134
S +R+VAL+++Y G + G+ + TVE+ +F+AL + RLL D+ ++ Y RC
Sbjct: 64 DFSRFKRRHVALRLLYLGWDYSGYVLQEDTGRTVEAALFEALERTRLL-EDRTDAHYHRC 122
Query: 135 GRTDKGVSSVGQVIALYLRSNLKISG---ANTGSSGEIVEEQHEGEIDYVRVLNRVLPND 191
GRTDKGVS+ QVI++ LR+NL A G E E+DYV++LN VLP +
Sbjct: 123 GRTDKGVSAFSQVISIDLRTNLSEGVGVFAQEGYQPNSSEASRTEELDYVKILNGVLPPE 182
Query: 192 IRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMDAT 251
IR+L W P F ARF C R Y+YFF + L++ M L+GEHDFRN CKMD
Sbjct: 183 IRVLAWAPVDQAFSARFDCRQRTYRYFFPRGSLDVERMCEGAALLVGEHDFRNLCKMDVA 242
Query: 252 N-VHNYRRHITMFEIF-------PTDVRYGGN------------------QLWVIKIRGS 285
N V NY R I IF P G L ++I G
Sbjct: 243 NGVTNYMRRILRTSIFRWPPSKSPLVASPAGEDSSHTATFHKDGFTEDSYDLLCLEIVGQ 302
Query: 286 AFLWHQVRCMVAVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDI 345
AFLWHQVRC+VAVL L+G+ LE P VI LLD K PRKPQY M++E+PLVL C+FE +
Sbjct: 303 AFLWHQVRCIVAVLLLIGQRLEEPQVISELLDVAKNPRKPQYAMAAELPLVLYDCQFEGL 362
Query: 346 KFMCSSDAGEALRIHLVNECQTFQLQAAVF-------------HEALLNCVPLLHDQSLP 392
++ SS EA+ HL +++ VF E++L +P + Q
Sbjct: 363 EWQQSSAEAEAVATHLQALWTQARIKXRVFTVTPASLLRRSALMESMLTTLPDVRSQ--- 419
Query: 393 PSRGTTKKKASYVPLMSRP 411
P + ++ PL RP
Sbjct: 420 PRCLLARVARNHKPLFERP 438
>F7GA48_ORNAN (tr|F7GA48) tRNA pseudouridine synthase OS=Ornithorhynchus anatinus
GN=PUS3 PE=3 SV=1
Length = 461
Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 140/346 (40%), Positives = 200/346 (57%), Gaps = 16/346 (4%)
Query: 79 HSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLVGDKKESQYSRCGRTD 138
+ +R+VAL++ Y G + GFAS+ T+E +F+AL K RL + ++ + Y RCGRTD
Sbjct: 42 YGRRHVALRIAYLGWGYQGFASQENTNNTIEERLFEALTKTRL-IERRQTANYHRCGRTD 100
Query: 139 KGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDYVRVLNRVLPNDIRILGWC 198
KGVS+ GQVI+L LRS G S + ++ + EI Y +LNRVLP DIR+L W
Sbjct: 101 KGVSAFGQVISLDLRSQTVRGGQEEEGSKDRMDAR-TAEIRYTHILNRVLPPDIRVLAWA 159
Query: 199 PAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMDATN-VHNYR 257
P F ARF+CL R Y+YFF + L++ AM+ A K +G HDFRN CKMD N V +++
Sbjct: 160 PVGSGFSARFNCLQRTYRYFFPRADLDLEAMDRAAQKYVGTHDFRNLCKMDVANGVTSFQ 219
Query: 258 RHITMFEIFPTDV-----RYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLESPNVI 312
R I ++ D R +L ++ G AFL+HQVRCM+A+LFLVG+ +E P VI
Sbjct: 220 RTILSAQVRRVDQSEETDRRDPFRLCQFEVTGQAFLYHQVRCMMAILFLVGQRMEGPEVI 279
Query: 313 DMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAGEALRIHLVNECQTFQLQA 372
D LLD K PRKPQY M+ E+PLVL C+FE ++++ + E HL Q
Sbjct: 280 DELLDVEKNPRKPQYSMAVELPLVLYDCQFEKLEWIYDREVQEFNVRHL----QQLWASH 335
Query: 373 AVFHEALLNCVPLLHDQSLPPSRGTTKKKASYVPLMSRPTEPSYEE 418
AV + L + + L + P G+ + P+ R P++ +
Sbjct: 336 AVQTQLLFSMLQGLDSAPVAPGPGS----GTDGPVRWRDVRPAFRQ 377
>I0YVI2_9CHLO (tr|I0YVI2) tRNA pseudouridine synthase (Fragment) OS=Coccomyxa
subellipsoidea C-169 GN=COCSUDRAFT_16420 PE=3 SV=1
Length = 277
Score = 251 bits (640), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 133/262 (50%), Positives = 172/262 (65%), Gaps = 19/262 (7%)
Query: 76 MSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLV-GDKKES-QYSR 133
MS + +RYVAL V Y G R++GFAS+A E TVE +F+A+ K +L+ G E YSR
Sbjct: 5 MSAYQRRYVALGVFYVGWRYHGFASQADSEETVEGHLFRAMRKTKLIPEGLGWEGLGYSR 64
Query: 134 CGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDYVRVLNRVLPNDIR 193
CGRTDKGVS++GQV+AL+LRS K G V+E E+DY LNR LP+DIR
Sbjct: 65 CGRTDKGVSALGQVVALWLRSGAKADEPALG-----VDE----EMDYAVTLNRALPDDIR 115
Query: 194 ILGWCPAPVDFHARFSCLSREYKYFFWKEG-LNIPAMESAGIKLIGEHDFRNFCKMDATN 252
+LGW P P F AR S YF + G L++ AM+ A +G+HDFRNFCK+DA +
Sbjct: 116 VLGWTPVPEGFSARCS------SYFIVQRGDLDLAAMQEAAGHFVGDHDFRNFCKVDAQH 169
Query: 253 VHNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLESPNVI 312
V ++RR I F I P ++ G Q+ + +RG+AFLWHQVRCM AVL LVG+GLESP+++
Sbjct: 170 VSSFRRTILDFRIVPVGLQ-GAAQVCALHVRGTAFLWHQVRCMAAVLLLVGRGLESPDIV 228
Query: 313 DMLLDTNKTPRKPQYIMSSEVP 334
LLD TP KPQY M+ EVP
Sbjct: 229 RRLLDVEVTPLKPQYNMAPEVP 250
>H3CH66_TETNG (tr|H3CH66) tRNA pseudouridine synthase (Fragment) OS=Tetraodon
nigroviridis GN=PUS3 (1 of 2) PE=3 SV=1
Length = 456
Score = 251 bits (640), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 158/419 (37%), Positives = 222/419 (52%), Gaps = 32/419 (7%)
Query: 13 TLQARVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRKSEEKIEKMTGYN 72
L RVKELEAE KL SQL +S E +G +IK +K+ +
Sbjct: 5 ALLQRVKELEAELEKLKSQLENS----AETNCPPTG----NAIKRGKKA------VKNRP 50
Query: 73 TRFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLVGDKKESQYS 132
F +H +R+VAL++ Y G + GFA + + TVE+ +F+AL K L+ D++ S Y
Sbjct: 51 LDFFAH-PRRHVALRLAYLGWAYQGFAVQENTDNTVEARLFEALHKT-CLIQDRQSSNYH 108
Query: 133 RCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHE----GEIDYVRVLNRVL 188
RCGRTDKGVS+ QVI + RS G + ++ E+ YV++LNRVL
Sbjct: 109 RCGRTDKGVSAFSQVITIESRSTQFCGGLGVKLPENVDADKKSQTAVSELPYVKMLNRVL 168
Query: 189 PNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKM 248
P+DIRI W PA F ARF C SR Y+Y+F + LN+ M A + G HDFRN CKM
Sbjct: 169 PHDIRIWNWAPAAEGFSARFDCQSRTYRYYFPRGSLNVELMADAAERYEGTHDFRNLCKM 228
Query: 249 DATN-VHNYRRHITMFEIFPTDVRYGGN----QLWVIKIRGSAFLWHQVRCMVAVLFLVG 303
D N V + R I + P + + + ++V ++RG AFL+HQVRCM+A+L L+G
Sbjct: 229 DVGNGVLQFERTILSSSVTPVNPEHASSTDQYDIFVFEVRGLAFLYHQVRCMMALLLLIG 288
Query: 304 KGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAGEALRIHLVN 363
+ LE+P +I+ LLD PRKPQY M+ + PLVL C FE + + S+D H+++
Sbjct: 289 QKLEAPEIINQLLDVQSNPRKPQYSMAVDYPLVLYHCHFEGLDWQQSNDEAN----HVLS 344
Query: 364 ECQTFQLQAAVFHEALLNCVPLLHDQSLPPSRGT---TKKKASYVPLMSRPTEPSYEER 419
Q Q+AV L + L S + +Y PL+ RP S E R
Sbjct: 345 TLQHHWTQSAVRSHVLHGMIKGLEGIGGASSDHCWLIEGSRKNYRPLLERPRCESLESR 403
>B3RZJ4_TRIAD (tr|B3RZJ4) tRNA pseudouridine synthase (Fragment) OS=Trichoplax
adhaerens GN=TRIADDRAFT_26740 PE=3 SV=1
Length = 279
Score = 250 bits (639), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 126/257 (49%), Positives = 171/257 (66%), Gaps = 13/257 (5%)
Query: 79 HSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLVGDKKESQYSRCGRTD 138
+++R VA K+ Y G +YG AS+ +E T+E+E+F AL K L+ ++ S YSR GRTD
Sbjct: 6 YNQRRVAFKLAYIGWDYYGLASQEGIEKTIEAELFNALTKT-CLIENRTNSNYSRSGRTD 64
Query: 139 KGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDYVRVLNRVLPNDIRILGWC 198
KGVS++GQVI+L +R+NL +SG V + E+ YV++LN+VLP DIRIL W
Sbjct: 65 KGVSALGQVISLNVRTNL--------ASGPGVIVETVSELSYVKLLNKVLPGDIRILAWA 116
Query: 199 PAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMDATNVHNYRR 258
P DF ARF+ +SR YKY+F + +NI AM A +L GEHDFRNFCKMD NV N+RR
Sbjct: 117 PVDNDFSARFNTVSRTYKYYFPRANMNIEAMNEAAQRLKGEHDFRNFCKMDLANVSNFRR 176
Query: 259 HITMFEIFPTDVRY----GGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLESPNVIDM 314
I ++ + Y G ++ I + G AFLWHQVRCMVA+LFL+G+GLE N+I+
Sbjct: 177 EILSIKVQSIETPYVLQNQGFEMCEIIVCGKAFLWHQVRCMVAILFLIGQGLEDANIINY 236
Query: 315 LLDTNKTPRKPQYIMSS 331
+LD K +KPQY M+S
Sbjct: 237 MLDIEKCNKKPQYGMAS 253
>C1EGZ5_MICSR (tr|C1EGZ5) tRNA pseudouridine synthase (Fragment) OS=Micromonas
sp. (strain RCC299 / NOUM17) GN=MICPUN_69198 PE=3 SV=1
Length = 290
Score = 248 bits (634), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 142/300 (47%), Positives = 177/300 (59%), Gaps = 27/300 (9%)
Query: 69 TGYNTRFMSHHSKRYVALKVMYFGKRFYGFASEAQMEP---TVESEIFKALAKIRLLVGD 125
G+N + + R+VAL VMY G + GFAS+ TVE +F+AL ++RL+ D
Sbjct: 3 NGFN---FAAYPSRHVALHVMYAGWDYRGFASQGAERDGVRTVEEALFRALKRVRLIAPD 59
Query: 126 K--KESQYSRCGRTDKGVSSVGQVIALYLRSNLK-----ISGANTGSSGEIVEEQHEG-E 177
K Y+RCGRTD GVS++GQV++ LR + + +G + HEG E
Sbjct: 60 ATWKTCDYTRCGRTDAGVSALGQVVSARLRCRVPRRDDDDDDDDLSETGRL----HEGDE 115
Query: 178 IDYVRVLNRVLPNDIRILGWCPAPVDFHARFSCLSREYKYFF--WKEGLNIPAMESAGIK 235
IDY VLNR LP DIRILGW P F ARF C R YKYFF W GL++ AM A
Sbjct: 116 IDYPAVLNRALPRDIRILGWTYVPPAFSARFDCDYRHYKYFFTDWN-GLDVRAMNEAASA 174
Query: 236 LIGEHDFRNFCKMDATNVHNYRRHITMFEIFPTDVRYGGNQLWV--IKIRGSAFLWHQVR 293
+GEHDFRNFCKMDA NVHNYRR I + V G V I++ G+AFLWHQVR
Sbjct: 175 FVGEHDFRNFCKMDARNVHNYRRRIDSCRV----VLAAGEPPGVAHIEVVGTAFLWHQVR 230
Query: 294 CMVAVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDA 353
C+ +VLFLVG G E P V+ +LD + PRKPQY M+ E PL+L C F D+ F S A
Sbjct: 231 CIASVLFLVGLGREPPGVVAHMLDLARCPRKPQYEMAPEEPLLLWRCGFRDVSFRLSDAA 290
>Q011R7_OSTTA (tr|Q011R7) Exopolyphosphatases and related proteins (ISS)
OS=Ostreococcus tauri GN=Ot09g02040 PE=3 SV=1
Length = 813
Score = 248 bits (633), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 150/404 (37%), Positives = 217/404 (53%), Gaps = 48/404 (11%)
Query: 52 TGSIKGNRKSEEKIEKMTGYNTRFMSHHSK--RYVALKVMYFGKRFYGFASEA--QMEPT 107
T + ++ E+K+ + + R ++ R +ALKV Y G + GFAS+ PT
Sbjct: 422 TDDVTPSQPPEQKVRRAKTSDARAFDFAARPSRAIALKVAYLGWPYRGFASQGPEATTPT 481
Query: 108 VESEIFKALAKIRLLVGDK---KESQYSRCGRTDKGVSSVGQVIALYLRSNLKISGANTG 164
VE +F+ALAK RL+ K + Y+RCGRTD+GVS +GQ++ L +RSN G
Sbjct: 482 VEWTLFEALAKTRLVAAAADVFKTASYARCGRTDRGVSGLGQIVTLQVRSN--------G 533
Query: 165 SSGEIVEEQHEGEIDYVRVLNRVLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKE-G 223
+S E+DYV +LNR LP+D+R LGW P + +ARF C R+YKYFF K
Sbjct: 534 AS------DPREELDYVGLLNRALPSDVRALGWAPVDEELNARFDCKWRQYKYFFEKTTA 587
Query: 224 LNIPAMESAGIKLIGEHDFRNFCKMDATNVHNYRRHITMFEIFPTDVRYGGNQLWVIKIR 283
L++ AM A G HDFRNFC+MDA NV ++ R + I G +L I +R
Sbjct: 588 LDLEAMGEAARAFEGVHDFRNFCRMDAENVKSFTRRVLECTIEEA----GDGKLMYINVR 643
Query: 284 GSAFLWHQVRCMVAVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFE 343
G+AFLWHQVR M +VLF+VG G E P+V++ LLD +TPRKPQY M+ E L+L ++
Sbjct: 644 GTAFLWHQVRNMASVLFMVGLGHEPPSVVERLLDLERTPRKPQYPMAPEESLLLWRSGYD 703
Query: 344 ----DIKFMCSSDAG-EALRIHLVNECQTFQLQAAVFHEALL----------------NC 382
D++ M SD L H+ ++ + +++AA+ E +
Sbjct: 704 ESRLDVERMHISDGALSQLEAHVASQMHSQRVRAAIHEETWAYVARARQRANEAAGASDT 763
Query: 383 VPLLHDQSLPPSRGTTK-KKASYVPLMSRPTEPSYEERRAKLNS 425
L + + G KA + L RPTE +Y+ER A+ N+
Sbjct: 764 TDLARELAAVTCAGNVSVSKARHQRLCDRPTEATYDERVARNNA 807
>M7P9X1_9ASCO (tr|M7P9X1) Uncharacterized protein OS=Pneumocystis murina B123
GN=PNEG_01370 PE=4 SV=1
Length = 416
Score = 248 bits (633), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 127/285 (44%), Positives = 176/285 (61%), Gaps = 18/285 (6%)
Query: 76 MSHHSKRYVALKVMYFGKRFYGFASEAQME--PTVESEIFKALAKIRLLVGDKKESQYSR 133
MS+++++Y+A K Y G + G ++ PTVE IF AL K +L + + +SR
Sbjct: 74 MSNYNQKYIAFKFAYLGWYYNGLVTQGNETHLPTVEETIFFALKKAKL-IDQESNCNFSR 132
Query: 134 CGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDYVRVLNRVLPNDIR 193
CGRTDK VS++GQVIAL +RSN S E E+ EI Y+ VLNR+LP IR
Sbjct: 133 CGRTDKSVSAIGQVIALNVRSN---------KSFEKDSEKKCCEIKYIDVLNRLLPKTIR 183
Query: 194 ILGWCP-APVDFHARFSCLSREYKYFFWKEG----LNIPAMESAGIKLIGEHDFRNFCKM 248
IL WC P DF ARFSC R YKY F+K L+I M A +GEHDFRNFCK+
Sbjct: 184 ILAWCSDLPSDFSARFSCQKRHYKYLFFKNSPGIHLDIEKMSKAAAYFVGEHDFRNFCKL 243
Query: 249 DAT-NVHNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLE 307
D++ ++ N+RR I EI + + L++ + GSAFLWHQVRCM+++LFLVG+ LE
Sbjct: 244 DSSKSIKNFRRTIIKSEISKYNADEDDDPLYIFDLEGSAFLWHQVRCMISILFLVGQNLE 303
Query: 308 SPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSD 352
P ++ LLD +KTP+KP Y ++ +PL+L C FE++ + S+
Sbjct: 304 EPEIVKTLLDISKTPKKPIYNIADGLPLILYDCHFENLNWNYGSN 348
>F0WIK8_9STRA (tr|F0WIK8) tRNA pseudouridine synthase OS=Albugo laibachii Nc14
GN=AlNc14C111G6408 PE=3 SV=1
Length = 493
Score = 248 bits (632), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 134/334 (40%), Positives = 197/334 (58%), Gaps = 27/334 (8%)
Query: 37 IHEMEKKLHVSGEKNTGSIKGN---RKSEEKIEKMTGYNTRF--MSHHSKRYVALKVMYF 91
IHE+ K HV + SIK +K+++++ K + R M ++ +R VA+K +Y
Sbjct: 30 IHELNK--HVKIDIIAESIKNTLQAKKTKKRLPKENSSDKRIFCMENYRQRMVAMKFLYS 87
Query: 92 GKRFYGFASEAQMEPTVESEIFKALAKIRLLVGDKKESQYSRCGRTDKGVSSVGQVIALY 151
G+R+ GFA + +E T+E +F + + +L+ + YSRCGRTDKGVS+ GQVI +
Sbjct: 88 GERYCGFARQDHIEETIEKYLFDTMQRTKLITS-IDDCCYSRCGRTDKGVSAFGQVIGIK 146
Query: 152 LRSNLKISGA--------NTGSSGEIVEEQHEG------EIDYVRVLNRVLPNDIRILGW 197
+RSN+ I S G + + +G E+DY LNR LP+DIR+
Sbjct: 147 VRSNVPIDAELLDVDSLDQVASGGRVRVKTQDGRIRKITEVDYAASLNRTLPSDIRVYSV 206
Query: 198 CPAPVDFHARFSC-LSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMDATNVHNY 256
AP +F ARF+C R Y+YFF K+ L+I M A I G HDFRNFC++D TN +
Sbjct: 207 VNAPNNFSARFNCDRGRSYRYFFMKKDLDIEKMRLAAIGFEGLHDFRNFCRID-TNCQTF 265
Query: 257 RRHITMFEIFPTDVRYGGN---QLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLESPNVID 313
R++ F+I +D N Q++ +I G+AFLWHQVRCMV++LFL+G+G E P+++
Sbjct: 266 DRNVRSFKIKSSDEIGDKNPYRQMYYFEIHGNAFLWHQVRCMVSILFLIGQGREEPSIVK 325
Query: 314 MLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKF 347
+LD K PRKPQY ++ + PLVL C F+ I F
Sbjct: 326 KMLDIEKYPRKPQYAIAPDHPLVLHDCRFDSINF 359
>Q4SEJ2_TETNG (tr|Q4SEJ2) tRNA pseudouridine synthase (Fragment) OS=Tetraodon
nigroviridis GN=GSTENG00019536001 PE=3 SV=1
Length = 412
Score = 247 bits (631), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 147/373 (39%), Positives = 206/373 (55%), Gaps = 19/373 (5%)
Query: 13 TLQARVKELEAENAKLLSQLA--DSHIHEMEKKLHVSGEKNTGSIKGNRKSEEKIEKMTG 70
L RVKELEAE KL SQL + + + S E N K +K K
Sbjct: 5 ALLQRVKELEAELEKLKSQLEKRSNDAKPIPEPSPSSAETNCPPTGNAIKRGKKAVKNRP 64
Query: 71 YNTRFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLVGDKKESQ 130
+ F +H +R+VAL++ Y G + GFA + + TVE+ +F+AL K L+ D++ S
Sbjct: 65 LD--FFAH-PRRHVALRLAYLGWAYQGFAVQENTDNTVEARLFEALHKT-CLIQDRQSSN 120
Query: 131 YSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHE----GEIDYVRVLNR 186
Y RCGRTDKGVS+ QVI + RS G + ++ E+ YV++LNR
Sbjct: 121 YHRCGRTDKGVSAFSQVITIESRSTQFCGGLGVKLPENVDADKKSQTAVSELPYVKMLNR 180
Query: 187 VLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFC 246
VLP+DIRI W PA F ARF C SR Y+Y+F + LN+ M A + G HDFRN C
Sbjct: 181 VLPHDIRIWNWAPAAEGFSARFDCQSRTYRYYFPRGSLNVELMADAAERYEGTHDFRNLC 240
Query: 247 KMDATN-VHNYRRHITMFEIFPTDVRYGGN----QLWVIKIRGSAFLWHQVRCMVAVLFL 301
KMD N V + R I + P + + + ++V ++RG AFL+HQVRCM+A+L L
Sbjct: 241 KMDVGNGVLQFERTILSSSVTPVNPEHASSTDQYDIFVFEVRGLAFLYHQVRCMMALLLL 300
Query: 302 VGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAGEALRIHL 361
+G+ LE+P +I+ LLD PRKPQY M+ + PLVL C FE + + S+D H+
Sbjct: 301 IGQKLEAPEIINQLLDVQSNPRKPQYSMAVDYPLVLYHCHFEGLDWQQSNDEAN----HV 356
Query: 362 VNECQTFQLQAAV 374
++ Q Q+AV
Sbjct: 357 LSTLQHHWTQSAV 369
>L0P949_PNEJ8 (tr|L0P949) tRNA pseudouridine synthase OS=Pneumocystis jiroveci
(strain SE8) GN=PNEJI1_002419 PE=3 SV=1
Length = 353
Score = 247 bits (630), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 137/367 (37%), Positives = 206/367 (56%), Gaps = 34/367 (9%)
Query: 76 MSHHSKRYVALKVMYFGKRFYGFASEAQME--PTVESEIFKALAKIRLLVGDKKESQYSR 133
MS++++RY+A K Y G + G ++ PTVE IF AL K +L + ++ +SR
Sbjct: 1 MSNYNQRYIAFKFAYLGWYYNGLVTQGNKTQLPTVEETIFFALKKAKL-IDHERNCNFSR 59
Query: 134 CGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDYVRVLNRVLPNDIR 193
CGRTDKGV+++GQV+AL +RSN + E+ EI Y+ +LN++LP IR
Sbjct: 60 CGRTDKGVTAIGQVMALNVRSNKPFNED---------SEEKWSEIKYIDILNKLLPKTIR 110
Query: 194 ILGWCP-APVDFHARFSCLSREYKYFFWKEG----LNIPAMESAGIKLIGEHDFRNFCKM 248
IL WC P DF ARFSC R YKY F+K+ LNI M A IG+HDFRNFCK+
Sbjct: 111 ILAWCSDLPSDFSARFSCQKRHYKYLFFKDSPNVQLNIEKMSKAASYFIGKHDFRNFCKL 170
Query: 249 DAT-NVHNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLE 307
D + + N+ R IT EI + + L+V + G+AFLWHQVR M+AVLFLVG+ LE
Sbjct: 171 DTSKQITNFTRIITRSEINKYNTAEENDSLYVFDLEGTAFLWHQVRSMIAVLFLVGQDLE 230
Query: 308 SPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDA-GEALRIHLVNECQ 366
P +I LLDT+KT +KP Y ++ ++PL+L C F+++ + + ++L ++ +
Sbjct: 231 KPEIIKTLLDTSKTSQKPIYNIAHDLPLILYDCHFQNLNWNYGEETFSQSLYKNIYDLWH 290
Query: 367 TFQLQAAVFHEALLNCVPLLHDQSLPPS-----------RGTTKKKASYVPLMSRPTEPS 415
T ++Q + L N + + +P + G + YV + +R E +
Sbjct: 291 TAKIQNTIIDLLLKN----IQNNKIPNNIITKKVIIKDGTGVNQSLTKYVQIENRKKENN 346
Query: 416 YEERRAK 422
Y+ + K
Sbjct: 347 YKNAKNK 353
>F0ZSG7_DICPU (tr|F0ZSG7) tRNA pseudouridine synthase OS=Dictyostelium purpureum
GN=DICPUDRAFT_154861 PE=3 SV=1
Length = 449
Score = 247 bits (630), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 137/327 (41%), Positives = 190/327 (58%), Gaps = 27/327 (8%)
Query: 72 NTRFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLVGDKKESQY 131
N F H +RYVA KV Y G ++GFA++ + T+E + KAL + L + D K S Y
Sbjct: 59 NVNFDKCH-RRYVAFKVSYVGWPYHGFAAQDCTDETIEGHLIKALKRTSL-ISDIKTSNY 116
Query: 132 SRCGRTDKGVSSVGQVIALYLRSNLK----ISGANTGSSGEIVEEQH------------- 174
++ GRTDKGVS+ GQVI+LY+RSNL I S G I
Sbjct: 117 AKSGRTDKGVSAFGQVISLYVRSNLTEGEGIIAPLDQSGGPISNRPSKNNNNNSNSNNQK 176
Query: 175 -----EGEIDYVRVLNRVLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAM 229
+ E YV++LN VLP +IR+LGW P P F++RFS L R YKYFF +++ M
Sbjct: 177 QQNKAKEEFPYVKMLNGVLPPEIRVLGWAPIPFHFNSRFSTLFRTYKYFFTLNNMDLNLM 236
Query: 230 ESAGIKLIGEHDFRNFCKMDATNVHNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFLW 289
+ AG +GEHDF NFCKMD NV +++R I F I P + N L+V I+G AFLW
Sbjct: 237 KEAGNHYLGEHDFSNFCKMDIENVKSFKRVILEFSIEPVN---NHNDLYVATIKGYAFLW 293
Query: 290 HQVRCMVAVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMC 349
HQ+RCM+A+LFL+G+ ++I LLDT+ KP Y M+SE+PLVL C +ED++F+
Sbjct: 294 HQIRCMMAMLFLIGQKKFPVSIIPELLDTSNGITKPPYEMASEIPLVLFDCGYEDLEFII 353
Query: 350 SSDAGEALRIHLVNECQTFQLQAAVFH 376
+DA E + N F +++ V +
Sbjct: 354 DNDAQERTLSVMNNLYNQFLIKSQVIN 380
>Q9D0F7_MOUSE (tr|Q9D0F7) tRNA pseudouridine synthase OS=Mus musculus GN=Pus3
PE=2 SV=1
Length = 316
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 139/329 (42%), Positives = 188/329 (57%), Gaps = 25/329 (7%)
Query: 6 SDVDHIATLQARVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRKSEEKI 65
+D + I L RVKELE E + ++KK + SI+ N K
Sbjct: 5 TDRNQIEKLLNRVKELEQE------------VERLKKKKEQANNIKDSSIRENSLGSGKA 52
Query: 66 EKMTGYNTRFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLVGD 125
++ + S H +R+VALK+ Y G + GFAS+ T+E ++F+AL K RL V
Sbjct: 53 KRAFDF-----SAHGRRHVALKIAYLGWGYQGFASQENTSNTIEEKLFEALTKTRL-VES 106
Query: 126 KKESQYSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDYVRVLN 185
++ S Y RCGRTDKGVS+ GQVI+L LRS S + S+ + + EI Y +LN
Sbjct: 107 RQTSNYHRCGRTDKGVSAFGQVISLDLRSQFPTSRDSEDSNLKHEADDLAKEIRYTHILN 166
Query: 186 RVLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNF 245
RVLP DIR+L W P F ARFSCL R Y+YFF + L+I M A K +G HDFRN
Sbjct: 167 RVLPADIRVLAWAPVEPSFSARFSCLERTYRYFFPRADLDIATMNYAAQKYVGTHDFRNL 226
Query: 246 CKMDATN-VHNYRRHITMFEI-----FPTDVRYGGN-QLWVIKIRGSAFLWHQVRCMVAV 298
CKMD N V N++R I ++ P + R QL ++ G AFL+HQVRCM+A+
Sbjct: 227 CKMDVANGVINFQRTILCAQVQLVAQSPGEERRQEPFQLCQFEVIGQAFLYHQVRCMMAI 286
Query: 299 LFLVGKGLESPNVIDMLLDTNKTPRKPQY 327
LFL+G+G+E P +ID LL+ K P+KPQY
Sbjct: 287 LFLIGQGMEKPEIIDELLNIQKNPQKPQY 315
>D8RZ63_SELML (tr|D8RZ63) tRNA pseudouridine synthase (Fragment) OS=Selaginella
moellendorffii GN=SELMODRAFT_105100 PE=3 SV=1
Length = 175
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 110/173 (63%), Positives = 133/173 (76%), Gaps = 5/173 (2%)
Query: 177 EIDYVRVLNRVLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKL 236
EIDYV LNR LP DIR+LGWCP P FHARFSCL REYKYFF +GLNI AM+ A +L
Sbjct: 1 EIDYVSSLNRALPADIRVLGWCPVPPGFHARFSCLYREYKYFFIDDGLNIDAMKQASQRL 60
Query: 237 IGEHDFRNFCKMDATNVHNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMV 296
+GEHDFRNFCKMDA N+HNY R I F+I P + LWV+ +RG+AFLWHQVRCM
Sbjct: 61 LGEHDFRNFCKMDADNIHNYTRQILAFDILPIE-----ECLWVMHVRGNAFLWHQVRCMA 115
Query: 297 AVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMC 349
AVLF++G+G E+ +ID LLD +KT RKPQY+M+ E+PLVLQSC F+ ++F C
Sbjct: 116 AVLFMIGRGHETLTIIDDLLDVDKTMRKPQYVMAPELPLVLQSCAFQGLRFYC 168
>R7VL81_9ANNE (tr|R7VL81) Uncharacterized protein (Fragment) OS=Capitella teleta
GN=CAPTEDRAFT_127384 PE=4 SV=1
Length = 372
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 128/286 (44%), Positives = 177/286 (61%), Gaps = 15/286 (5%)
Query: 79 HSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLVGDKKESQYSRCGRTD 138
++KR+VA K Y G F GFA + T+E+ +F A K +L + + S+Y RCGRTD
Sbjct: 1 YNKRHVAFKFTYLGWDFNGFADQETSSKTIEAAVFDAFVKTKL-IESRDTSKYQRCGRTD 59
Query: 139 KGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHE--GEIDYVRVLNRVLPNDIRILG 196
KGVS+ QVI+L +R+NL G + E+ E+ + ++LN LP +IR++
Sbjct: 60 KGVSAFTQVISLEVRTNLL-----EGPGVRVPEDNASRGKEMPFSKMLNGCLPPEIRVIA 114
Query: 197 WCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMDATN-VHN 255
WCP DF ARFSC SR YKYFF + LN+ M +A KLIG HDFRNFCKMD N V
Sbjct: 115 WCPVDEDFSARFSCQSRTYKYFFPRAQLNLDVMRAAAAKLIGLHDFRNFCKMDVRNGVIE 174
Query: 256 YRRHITMFEIFPTDVRYG----GNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLESPNV 311
Y R I+ I P + Y G + V+ + G +FLWHQVRC+ A+L ++G+G E+P +
Sbjct: 175 YMRRISEIHIEPFNSEYAAEDDGYSMCVMTVHGKSFLWHQVRCIAAILLIIGEGKETPEL 234
Query: 312 IDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAGEAL 357
ID LL+ K P++PQY+M+SE+PLVL EFE +++ DA E L
Sbjct: 235 IDDLLNVEKHPQRPQYMMASEIPLVLFGAEFEGTEWV--YDAAEDL 278
>C5M8F3_CANTT (tr|C5M8F3) tRNA pseudouridine synthase OS=Candida tropicalis
(strain ATCC MYA-3404 / T1) GN=CTRG_02675 PE=3 SV=1
Length = 437
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 137/355 (38%), Positives = 199/355 (56%), Gaps = 27/355 (7%)
Query: 77 SHHSKRYVALKVMYFGKRFYG--FASEAQMEPTVESEIFKALAKIRLLVGDKKESQYSRC 134
S + R+VA K Y G + G F E PTVE I K LAK++L+ +E ++SRC
Sbjct: 69 SKQNMRFVAFKFAYLGWNYNGLAFQLEPTPLPTVEEIILKTLAKVKLIKEPIEEVKFSRC 128
Query: 135 GRTDKGVSSVGQVIALYLRSNL-KISGANTGSSGEIVEEQHEGEIDYVRVLNRVLPNDIR 193
GRTDKGVS++ QVI++ LRSNL K AN E + E+DY+ +LN LP+DI+
Sbjct: 129 GRTDKGVSAMNQVISIELRSNLSKEDQANP--------ELDDKEVDYLSILNANLPSDIK 180
Query: 194 ILGWC-PAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMDAT- 251
+ C P DF ARFSC+SR Y+Y F K+ L+I M G HDFRNFCK+D +
Sbjct: 181 VHSICLRPPEDFDARFSCISRHYRYIFKKQNLDIDLMNQGASLYQGIHDFRNFCKLDGSK 240
Query: 252 NVHNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLESPNV 311
+ N++R EI+ + + + + + ++GSAFLWHQVRCMVA+LF +G+GLE P +
Sbjct: 241 QITNFQR-----EIYSSKILHLHDDYYCFDLKGSAFLWHQVRCMVAILFTIGQGLEKPEI 295
Query: 312 IDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAGEALRIHLVNECQTFQLQ 371
+ L+D K P KPQY M+ ++PLVL CEF ++++ + D + LR+ + +Q
Sbjct: 296 VTELMDMEKYPTKPQYEMAHDIPLVLYDCEFPEMEWKVTKDEHKFLRVTQSFSKMEYDIQ 355
Query: 372 AAVFHEALLNCVPLLHDQSLPPSR---------GTTKKKASYVPLMSRPTEPSYE 417
++ V Q P + G + +YVPL +R +YE
Sbjct: 356 LKAQMSQIMETVLFDDRQMSTPDKILKTMNTGDGVGRSYNTYVPLSARDRSENYE 410
>J9K2I3_ACYPI (tr|J9K2I3) tRNA pseudouridine synthase OS=Acyrthosiphon pisum PE=3
SV=1
Length = 402
Score = 245 bits (625), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 150/408 (36%), Positives = 221/408 (54%), Gaps = 40/408 (9%)
Query: 29 LSQLADSHIHEMEKKLHVSGEKNTGSI----KGNRKSEEKIEKMTGYNTRFMSHHSKRYV 84
+S DS +++E H++ E+ I + NRK + F +H KR+V
Sbjct: 1 MSLEVDSDNYDLENLNHLTKEELISIILDLKEQNRKKLGRKITKPKRTIDFTKYH-KRHV 59
Query: 85 ALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLVGDKKESQYSRCGRTDKGVSSV 144
K++Y G ++GFA++ E T+E E+F+AL I L+ ++ S Y RCGRTDKGVSS
Sbjct: 60 VFKILYLGWDYHGFATQDVSEKTIEYELFRALT-ICCLIESRQTSNYHRCGRTDKGVSSF 118
Query: 145 GQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDYVRVLNRVLPNDIRILGWCPAPVDF 204
QVI+L +RSN G E E+ Y ++LNR+LP DIR++ W P DF
Sbjct: 119 SQVISLTVRSN--------GDDSE--------ELPYCKMLNRLLPKDIRVVAWGPVKDDF 162
Query: 205 HARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMDATN-VHNYRRHITMF 263
ARF C SR YKY+F + L++ M A +++G HDFRN CKMD N V + R IT
Sbjct: 163 SARFDCGSRTYKYWFPRGDLDVDLMNQAIQQVVGTHDFRNLCKMDVANGVVQFYRRITSA 222
Query: 264 EI--------FPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLESPNVIDML 315
+I F + Y +L ++ G AFLWHQ+RC+V+VL LVG E+PN+ L
Sbjct: 223 DIKICSENNQFSKNRDYDMCELTIV---GKAFLWHQIRCIVSVLILVGCRKENPNIFKDL 279
Query: 316 LDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAGEALRIHLVNECQTFQLQAAVF 375
L+ PRKPQY ++S++PL L C+FE++ ++ ++ + L T ++A +
Sbjct: 280 LNIENCPRKPQYCLASDLPLNLFDCQFENVNWVIEDESISEVITSLQCSWATHMIKATML 339
Query: 376 HEALLNCVPL----LHDQSLPPSRGTTKKKASYVPLMSRPTEPSYEER 419
E L N L +++QS+ +G K Y PL+ RP S E R
Sbjct: 340 GEMLKNTETLTENKVNNQSIWLIQGV--KSKIYQPLLKRPASASLENR 385
>F4PSG5_DICFS (tr|F4PSG5) tRNA pseudouridylate synthase OS=Dictyostelium
fasciculatum (strain SH3) GN=pus3 PE=3 SV=1
Length = 510
Score = 245 bits (625), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 134/316 (42%), Positives = 184/316 (58%), Gaps = 25/316 (7%)
Query: 80 SKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLVGDKKESQYSRCGRTDK 139
S+R+VALKV Y G ++GFA++ E T+E +F AL K L+ D KE Y++ GRTDK
Sbjct: 89 SRRFVALKVAYLGWHYHGFAAQQCTEETIEGHLFSALQKT-CLIRDIKECNYTKSGRTDK 147
Query: 140 GVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEG--------------------EID 179
GVS+ GQVI+LY+RSNLK G ++ + E
Sbjct: 148 GVSAFGQVISLYVRSNLK---QGDGIIPPVIPDDDNKNQQQKNKNNNKKNNNHVTPIEYP 204
Query: 180 YVRVLNRVLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGE 239
YVR+LN VLP IR+L W P P F+ARFS L R YKY+F GL+I AM+ AG +G
Sbjct: 205 YVRMLNGVLPPYIRVLAWTPVPFHFNARFSTLYRTYKYYFNPAGLDIEAMKEAGNHFLGS 264
Query: 240 HDFRNFCKMDATNVHNYRRHITMFEIFPTDV-RYGGNQLWVIKIRGSAFLWHQVRCMVAV 298
HDF NFCK+D V ++ R I F+I P V ++ L+ I G AFLWHQ+RCM+A+
Sbjct: 265 HDFSNFCKIDLEAVKSFTRVILSFDIAPVPVGQFQSGGLYEATICGYAFLWHQIRCMMAM 324
Query: 299 LFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAGEALR 358
L L+G+ +I LLDT+ KP Y M+SE+PLVL C +ED++F+ +D+ + L
Sbjct: 325 LLLIGQKKFPTTIIKDLLDTSSAIAKPSYEMASEIPLVLYDCGYEDLEFIYENDSHQKLI 384
Query: 359 IHLVNECQTFQLQAAV 374
+ N ++AAV
Sbjct: 385 SSMFNVWNDHYIKAAV 400
>H3CY76_TETNG (tr|H3CY76) tRNA pseudouridine synthase (Fragment) OS=Tetraodon
nigroviridis GN=PUS3 (2 of 2) PE=3 SV=1
Length = 414
Score = 245 bits (625), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 148/375 (39%), Positives = 207/375 (55%), Gaps = 21/375 (5%)
Query: 13 TLQARVKELEAENAKLLSQLAD--SHIHEMEKKLHVSGEKNTGSIKGNRKSEEKIEKMTG 70
L RVKELEAE KL SQL + + + S E N K +K K
Sbjct: 5 ALLQRVKELEAELEKLKSQLEKRRNDAKPIPEPSPSSAETNCPPTGNAIKRGKKAVKNRP 64
Query: 71 YNTRFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLVGDKKESQ 130
+ F +H +R+VAL++ Y G + GFA + + TVE+ +F+AL K L+ D++ S
Sbjct: 65 LD--FFAH-PRRHVALRLAYLGWAYQGFAVQENTDNTVEARLFEALHKT-CLIQDRQSSN 120
Query: 131 YSRCGRTDKGVSSVGQVIALY--LRSNLKISGANTGSSGEIVEEQHE----GEIDYVRVL 184
Y RCGRTDKGVS+ QV A+ LRS G + ++ E+ YV++L
Sbjct: 121 YHRCGRTDKGVSAFSQVTAVQSSLRSTQFCGGLGVKLPENVDADKKSQTAVSELPYVKML 180
Query: 185 NRVLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRN 244
NRVLP+DIRI W PA F ARF C SR Y+Y+F + LN+ M A + G HDFRN
Sbjct: 181 NRVLPHDIRIWNWAPAAEGFSARFDCQSRTYRYYFPRGSLNVELMADAAERYEGTHDFRN 240
Query: 245 FCKMDATN-VHNYRRHITMFEIFPTDVRYGGN----QLWVIKIRGSAFLWHQVRCMVAVL 299
CKMD N V + R I + P + + + ++V ++RG AFL+HQVRCM+A+L
Sbjct: 241 LCKMDVGNGVLQFERTILSSSVTPVNPEHASSTDQYDIFVFEVRGLAFLYHQVRCMMALL 300
Query: 300 FLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAGEALRI 359
L+G+ LE+P +I+ LLD PRKPQY M+ + PLVL C FE + + S+D
Sbjct: 301 LLIGQKLEAPEIINQLLDVQSNPRKPQYSMAVDYPLVLYHCHFEGLDWQQSNDEAN---- 356
Query: 360 HLVNECQTFQLQAAV 374
H+++ Q Q+AV
Sbjct: 357 HVLSTLQHHWTQSAV 371
>H2U850_TAKRU (tr|H2U850) tRNA pseudouridine synthase (Fragment) OS=Takifugu
rubripes GN=LOC101061470 PE=3 SV=1
Length = 412
Score = 244 bits (623), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 150/374 (40%), Positives = 209/374 (55%), Gaps = 22/374 (5%)
Query: 14 LQARVKELEAENAKLLSQLAD-SHIHEMEKKLHVSGEKNTGSIKGNRKSEEKIEKMTGYN 72
L RVKELEAE KL SQL + S + L S ++ + N + K G
Sbjct: 6 LMQRVKELEAELEKLKSQLKEGSSDAALLSDLSPSPCESQCTPNDNVSTRRK---KAGKR 62
Query: 73 TRFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLVGDKKESQYS 132
S H +R+VAL++ Y G + GFA + TVE+ +F+AL K L+ D++ S Y
Sbjct: 63 PLDFSAHPRRHVALRLAYLGWSYQGFAVQENTGHTVEARLFEALQKT-CLIQDRQTSNYH 121
Query: 133 RCGRTDKGVSSVGQVIALY--LRSN-----LKISGANTGSSGEIVEEQHEGEIDYVRVLN 185
RCGRTDKGVS+ QV +L LRS L + T +G + E+ YV++LN
Sbjct: 122 RCGRTDKGVSAFSQVTSLSEDLRSTQFCGGLGVRLPETVDAGAKTKAA-VSELPYVKMLN 180
Query: 186 RVLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNF 245
RVLP DIRIL W PA F ARF C SR Y+Y+F + LN+ M A + G+HDFRN
Sbjct: 181 RVLPQDIRILDWAPAEEGFSARFDCQSRTYRYYFPRGALNLELMADAAKRYEGKHDFRNL 240
Query: 246 CKMDATN-VHNYRRHITMFEIFPTDVRYGGN----QLWVIKIRGSAFLWHQVRCMVAVLF 300
CKMD N V + R I I P + + + +++ +++G AFL+HQVRCM+A+L
Sbjct: 241 CKMDVGNGVLQFERTILSASIRPVNPIHASSTDQYDIFIFEVKGLAFLYHQVRCMMALLL 300
Query: 301 LVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAGEALRIH 360
L+G+ LE+P +I+ LLD PRKPQY M+ + PLVL C FE + + S+D H
Sbjct: 301 LIGQELEAPEIINQLLDVQSNPRKPQYSMAVDYPLVLHDCHFEGLDWQQSNDEVN----H 356
Query: 361 LVNECQTFQLQAAV 374
+++ Q Q+AV
Sbjct: 357 VLSTLQHHWTQSAV 370
>H2U849_TAKRU (tr|H2U849) tRNA pseudouridine synthase (Fragment) OS=Takifugu
rubripes GN=LOC101061470 PE=3 SV=1
Length = 428
Score = 244 bits (622), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 145/368 (39%), Positives = 205/368 (55%), Gaps = 34/368 (9%)
Query: 17 RVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRKSEEKIEKMTGYNTRFM 76
RVKELEAE KL SQL + G + + S + ++ +
Sbjct: 15 RVKELEAELEKLKSQLKE-------------GSSDAALLSDLSPSPCERKRPLDF----- 56
Query: 77 SHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLVGDKKESQYSRCGR 136
S H +R+VAL++ Y G + GFA + TVE+ +F+AL K L+ D++ S Y RCGR
Sbjct: 57 SAHPRRHVALRLAYLGWSYQGFAVQENTGHTVEARLFEALQKT-CLIQDRQTSNYHRCGR 115
Query: 137 TDKGVSSVGQVIALYLRSN-----LKISGANTGSSGEIVEEQHEGEIDYVRVLNRVLPND 191
TDKGVS+ QVI + LRS L + T +G + E+ YV++LNRVLP D
Sbjct: 116 TDKGVSAFSQVITIDLRSTQFCGGLGVRLPETVDAGAKTKAA-VSELPYVKMLNRVLPQD 174
Query: 192 IRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMDAT 251
IRIL W PA F ARF C SR Y+Y+F + LN+ M A + G+HDFRN CKMD
Sbjct: 175 IRILDWAPAEEGFSARFDCQSRTYRYYFPRGALNLELMADAAKRYEGKHDFRNLCKMDVG 234
Query: 252 N-VHNYRRHITMFEIFPTDVRYGGN----QLWVIKIRGSAFLWHQVRCMVAVLFLVGKGL 306
N V + R I I P + + + +++ +++G AFL+HQVRCM+A+L L+G+ L
Sbjct: 235 NGVLQFERTILSASIRPVNPIHASSTDQYDIFIFEVKGLAFLYHQVRCMMALLLLIGQEL 294
Query: 307 ESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAGEALRIHLVNECQ 366
E+P +I+ LLD PRKPQY M+ + PLVL C FE + + S+D H+++ Q
Sbjct: 295 EAPEIINQLLDVQSNPRKPQYSMAVDYPLVLHDCHFEGLDWQQSNDEVN----HVLSTLQ 350
Query: 367 TFQLQAAV 374
Q+AV
Sbjct: 351 HHWTQSAV 358
>M1D2U9_SOLTU (tr|M1D2U9) tRNA pseudouridine synthase OS=Solanum tuberosum
GN=PGSC0003DMG400031154 PE=3 SV=1
Length = 177
Score = 244 bits (622), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 115/178 (64%), Positives = 143/178 (80%), Gaps = 5/178 (2%)
Query: 248 MDATNVHNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLE 307
MDA NVHNYRRHI FEI P + +QL ++KI+GSAFLWHQVRCMVAVLFL+G+GLE
Sbjct: 1 MDADNVHNYRRHIISFEILPFNESDKADQLMIMKIKGSAFLWHQVRCMVAVLFLIGQGLE 60
Query: 308 SPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAGEALRIHLVNECQT 367
SPNVID+LLD +TPRKPQ+ M+ E+PLVLQSCEFE +KF+CSSD +AL HL EC++
Sbjct: 61 SPNVIDLLLDIERTPRKPQFPMAPEIPLVLQSCEFEGLKFICSSDTNQALNEHLERECRS 120
Query: 368 FQLQAAVFHEALLN--CVPLLHDQSLPPSRGTTKKKASYVPLMSRPTEPSYEERRAKL 423
++LQ+A+FHEALLN C+ + ++ S S T KK AS++PL+SRPTEPSYEERR KL
Sbjct: 121 YKLQSAIFHEALLNSSCIEIDNNIS---SDHTKKKGASHIPLLSRPTEPSYEERRKKL 175
>A8I8K9_CHLRE (tr|A8I8K9) tRNA pseudouridine synthase (Fragment) OS=Chlamydomonas
reinhardtii GN=PUS4 PE=3 SV=1
Length = 287
Score = 244 bits (622), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 124/283 (43%), Positives = 168/283 (59%), Gaps = 18/283 (6%)
Query: 76 MSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLL----VGDKKESQY 131
+ RYVAL++MY G F GFA + E T+E +F AL K +L+ E Y
Sbjct: 5 FGRYRTRYVALELMYVGWAFQGFARQDNTENTIEGVLFSALRKTKLIPEAAAKPISELAY 64
Query: 132 SRCGRTDKGVSSVGQVIALYLRSNLKISGANTG-SSGEIVEEQHEG---------EIDYV 181
SRCGRTD+GVS++GQV+AL LRS + G G + E E DY
Sbjct: 65 SRCGRTDRGVSALGQVVALQLRSCARPGGGGLGYHDPSMCGPARESLQCPSWCVQEFDYP 124
Query: 182 RVLNRVLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHD 241
R++N+ LP ++RILGW P P DF+AR C R ++ + + L+I AM +A IGEHD
Sbjct: 125 RLINKALPPEVRILGWTPVPADFNAR--CGGRAGEWVYQQHSLDIQAMRTAAAHFIGEHD 182
Query: 242 FRNFCKMDATNVHNYRRHITMFEIFP--TDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVL 299
FRNFCK D V ++RR I F + P T +Q++ + +RG+AFLWHQVRCM A+L
Sbjct: 183 FRNFCKPDVATVRSFRRRILSFTVEPVTTSAADAAHQVYALTVRGTAFLWHQVRCMAAIL 242
Query: 300 FLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEF 342
+VG+G E+P+V+ LLD PRKPQY M+ E PL+L +C F
Sbjct: 243 LMVGRGQEAPDVVARLLDVEACPRKPQYSMAPEEPLLLYACGF 285
>D2VLE9_NAEGR (tr|D2VLE9) tRNA pseudouridine synthase OS=Naegleria gruberi
GN=NAEGRDRAFT_50518 PE=3 SV=1
Length = 430
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 118/282 (41%), Positives = 177/282 (62%), Gaps = 27/282 (9%)
Query: 77 SHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLVGDKKESQYSRCGR 136
S + R++ALK+ Y G + G + + T+E +F+AL ++L + + ++++CGR
Sbjct: 63 STQTYRHIALKIAYLGFNYQGLSKQLHTPNTIEHHLFEALKTLKL-IEHEDNCEFTKCGR 121
Query: 137 TDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDYVRVLNRVLPNDIRILG 196
TDKGVS++GQV++ R N K + DYVR++N +LP+DIR+L
Sbjct: 122 TDKGVSALGQVVSFNCRYNPKKN-------------------DYVRLINSLLPDDIRVLA 162
Query: 197 WCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMDATNVHNY 256
WCP DF ARF CL R YKY+F ++ LNI M+ A +GEHDFRNFCK++ V N+
Sbjct: 163 WCPVSKDFDARFGCLQRTYKYYFIRQNLNIEKMKQAAAHFVGEHDFRNFCKINE-EVTNF 221
Query: 257 RRHITMFEIFPTDV---RYGGN---QLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLESPN 310
RR I EI +D+ ++G + +++ I + G++FLWHQVRCM A+LFL+G+G E P+
Sbjct: 222 RRRILSMEIIKSDLLHQQHGNDEYFEIYEIVVCGTSFLWHQVRCMTAILFLIGEGKEEPS 281
Query: 311 VIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSD 352
VI LLD K +P Y ++SE PLVL C FED+K++ ++D
Sbjct: 282 VIPELLDIEKYKARPVYHIASEFPLVLYDCVFEDLKWIHTND 323
>I1CNT1_RHIO9 (tr|I1CNT1) tRNA pseudouridine synthase OS=Rhizopus delemar (strain
RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880)
GN=RO3G_14822 PE=3 SV=1
Length = 444
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 127/275 (46%), Positives = 172/275 (62%), Gaps = 17/275 (6%)
Query: 76 MSHHSKRYVALKVMYFGKRFYGFASEAQME-PTVESEIFKALAKIRLLVGDKKESQYSRC 134
+S + +R +ALKV Y G + GFA + PTVE EIFKAL K L+ +E YSR
Sbjct: 67 ISQYGQRRIALKVAYLGWNYCGFAHLKEKNIPTVEGEIFKALQKCSLITS-PEECNYSRG 125
Query: 135 GRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDYVRVLNRVLPNDIRI 194
GRTDKGVS +GQVIAL +RS + I E + ++ Y+ ++N LP DIRI
Sbjct: 126 GRTDKGVSGLGQVIALDVRSTQR---------KLIKEHGDDRDLPYINMINSFLPEDIRI 176
Query: 195 LGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMDAT-NV 253
L W P F+ARF CLSR YKYFF KEG +I M A +IG HDFRNFC +DA N+
Sbjct: 177 LAWAPVATTFNARFDCLSRTYKYFFKKEGQDIERMREAASYMIGSHDFRNFCLLDAARNL 236
Query: 254 HNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLESPNVID 313
+Y R I FEI P + + +K++G+ FLWHQVR +++VLFLVG+ LE P +I
Sbjct: 237 QHYTREIISFEINPVE-----QDFYEVKLKGTGFLWHQVRYIMSVLFLVGQRLEHPAIIQ 291
Query: 314 MLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFM 348
LL+ +K P +P Y ++S +PL+L CE ++IK++
Sbjct: 292 DLLNIDKIPARPDYPLASGIPLMLYDCEIQNIKWI 326
>H3GBW2_PHYRM (tr|H3GBW2) Uncharacterized protein OS=Phytophthora ramorum PE=3
SV=1
Length = 919
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 125/289 (43%), Positives = 177/289 (61%), Gaps = 25/289 (8%)
Query: 76 MSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLVGDKKESQYSRCG 135
MS+++ R VA+K +Y G+++ GFA + M TVE + +AL + +L + + ++ YSRCG
Sbjct: 477 MSNYTARAVAVKFLYLGEKYAGFARQDHMPETVERYLLEALVRSKL-IENVDDAGYSRCG 535
Query: 136 RTDKGVSSVGQVIALYLRSNL----------KISGANTG-------SSGEIVEEQHEGEI 178
RTD+GVS+ GQV+AL +RSNL I G ++GEI + E+
Sbjct: 536 RTDRGVSAFGQVVALRMRSNLPATAELLSAPSIDDVRPGEKFQVRLTTGEI---KTLTEV 592
Query: 179 DYVRVLNRVLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIG 238
DY +NR LP DIR+ +F+ARF C +R Y+YFF + L+I M +A L+G
Sbjct: 593 DYASHMNRALPADIRVYSVASCRPEFNARFDCKARMYRYFFVRRDLDIEKMRAAAQYLVG 652
Query: 239 EHDFRNFCKMDATNVHNYRRHITMFEIFPTDVRYG---GNQLWVIKIRGSAFLWHQVRCM 295
+HDFRNFC++D N H Y R++ FEI + Q++ ++ G AFLWHQVRCM
Sbjct: 653 KHDFRNFCRIDP-NCHVYERNVRSFEIVECPGQRAEDPSQQMYRCEVFGRAFLWHQVRCM 711
Query: 296 VAVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFED 344
V VLFL+G G E P++I LLD +TPRKPQY M+S++PLVL C F D
Sbjct: 712 VEVLFLIGSGREEPSIIPQLLDIAQTPRKPQYDMASDLPLVLHECYFAD 760
>G4ZNB5_PHYSP (tr|G4ZNB5) Putative uncharacterized protein OS=Phytophthora sojae
(strain P6497) GN=PHYSODRAFT_346666 PE=3 SV=1
Length = 553
Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 124/286 (43%), Positives = 175/286 (61%), Gaps = 19/286 (6%)
Query: 76 MSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLVGDKKESQYSRCG 135
MS+++ R VA+K +Y G+++ GFA + M TVE + +AL + +L + + ++ YSRCG
Sbjct: 110 MSNYTMRAVAVKFLYLGEKYAGFARQDHMPETVERYLLEALVRSKL-IENVDDAGYSRCG 168
Query: 136 RTDKGVSSVGQVIALYLRSNL----------KISGANTGSSGEIVEEQHE----GEIDYV 181
RTD+GVS+ GQV+AL +RSNL I G ++ E E E+DY
Sbjct: 169 RTDRGVSAFGQVVALRIRSNLPATAELLSAPSIDDVRPGDKFQVRLESGEIKTLTEVDYA 228
Query: 182 RVLNRVLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHD 241
+NR LP DIR+ +F ARF C +R Y+YFF + L+I M +A L+G+HD
Sbjct: 229 SHINRALPADIRVYSVASCRPEFSARFDCKARMYRYFFVRRDLDIEKMRTAAQFLVGKHD 288
Query: 242 FRNFCKMDATNVHNYRRHITMFEIFPTDVRYGGN---QLWVIKIRGSAFLWHQVRCMVAV 298
FRNFC++D N H Y R++ FEI + + Q++ ++ G AFLWHQVRCMV V
Sbjct: 289 FRNFCRIDP-NCHVYERNVRSFEIVECPGQRADDPSQQMFRCEVFGRAFLWHQVRCMVEV 347
Query: 299 LFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFED 344
LFL+G G E P++I LLD +TPRKPQY M+S++PLVL C F D
Sbjct: 348 LFLIGSGQEEPSIIPRLLDIAQTPRKPQYDMASDLPLVLHDCYFAD 393
>Q4T1T7_TETNG (tr|Q4T1T7) tRNA pseudouridine synthase (Fragment) OS=Tetraodon
nigroviridis GN=GSTENG00008649001 PE=3 SV=1
Length = 409
Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 145/370 (39%), Positives = 203/370 (54%), Gaps = 16/370 (4%)
Query: 13 TLQARVKELEAENAKLLSQLAD--SHIHEMEKKLHVSGEKNTGSIKGNRKSEEKIEKMTG 70
L RVKELEAE KL SQL + + + S E N K +K K
Sbjct: 5 ALLQRVKELEAELEKLKSQLEKRRNDAKPIPEPSPSSAETNCPPTGNAIKRGKKAVKNRP 64
Query: 71 YNTRFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLVGDKKESQ 130
+ F +H +R+VAL++ Y G + GFA + + TVE+ +F+AL K L+ D++ S
Sbjct: 65 LD--FFAH-PRRHVALRLAYLGWAYQGFAVQENTDNTVEARLFEALHKT-CLIQDRQSSN 120
Query: 131 YSRCGRTDKGVSSVGQVIALYLRSNLKIS-GANTGSSGEIVEEQHEGEIDYVRVLNRVLP 189
Y RCGRTDKGVS+ QV A+ S + + E+ YV++LNRVLP
Sbjct: 121 YHRCGRTDKGVSAFSQVTAVQSLHTPPFSFKLPENVDADKKSQTAVSELPYVKMLNRVLP 180
Query: 190 NDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMD 249
+DIRI W PA F ARF C SR Y+Y+F + LN+ M A + G HDFRN CKMD
Sbjct: 181 HDIRIWNWAPAAEGFSARFDCQSRTYRYYFPRGSLNVELMADAAERYEGTHDFRNLCKMD 240
Query: 250 ATN-VHNYRRHITMFEIFPTDVRYGGN----QLWVIKIRGSAFLWHQVRCMVAVLFLVGK 304
N V + R I + P + + + ++V ++RG AFL+HQVRCM+A+L L+G+
Sbjct: 241 VGNGVLQFERTILSSSVTPVNPEHASSTDQYDIFVFEVRGLAFLYHQVRCMMALLLLIGQ 300
Query: 305 GLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAGEALRIHLVNE 364
LE+P +I+ LLD PRKPQY M+ + PLVL C FE + + S+D H+++
Sbjct: 301 KLEAPEIINQLLDVQSNPRKPQYSMAVDYPLVLYHCHFEGLDWQQSNDEAN----HVLST 356
Query: 365 CQTFQLQAAV 374
Q Q+AV
Sbjct: 357 LQHHWTQSAV 366
>E9BWH6_CAPO3 (tr|E9BWH6) tRNA-pseudouridine synthase OS=Capsaspora owczarzaki
(strain ATCC 30864) GN=CAOG_00677 PE=3 SV=1
Length = 548
Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 124/287 (43%), Positives = 176/287 (61%), Gaps = 23/287 (8%)
Query: 81 KRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLVGDKKESQYSRCGRTDKG 140
KR++ALK+ Y G ++ G A + +E TVE + AL K +L+ D + YSRCGRTD G
Sbjct: 139 KRHIALKIAYLGWKYNGLAIQPDVE-TVEGHLISAL-KTCMLIPDLSWANYSRCGRTDAG 196
Query: 141 VSSVGQVIALYLRSNL-------KISGANTGSSGEIVEEQHEGEIDYVRVLNRVLPNDIR 193
VS+ GQV++L +R+NL + A G E H E++YV LNR LP DIR
Sbjct: 197 VSAFGQVVSLDVRTNLTEGVGVIQQESAIPFQKGRKTEATH-AELEYVFKLNRQLPADIR 255
Query: 194 ILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMDATN- 252
++ W P P+ F ARFSCL R+YKYFF K +NI AM+ A +G HD+RNFCK + N
Sbjct: 256 VVAWTPVPLAFDARFSCLYRKYKYFFPKNNMNIEAMQRAAQYFVGTHDYRNFCKTNFDNG 315
Query: 253 VHNYRRHITMFEIF------------PTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLF 300
V ++ R I F++ TD+ +++ + + G AFL+HQVRCM ++LF
Sbjct: 316 VKSFVRRILAFDVVKSTCLPINSATDATDLEGQAAEMYELNVLGFAFLYHQVRCMTSILF 375
Query: 301 LVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKF 347
+VG+GLE P V++ +LD K P +P Y M+S+VPLVL C FED+++
Sbjct: 376 MVGQGLEPPEVVEHMLDIEKCPNRPNYNMASDVPLVLYDCVFEDLEW 422
>Q54I97_DICDI (tr|Q54I97) tRNA pseudouridine synthase OS=Dictyostelium discoideum
GN=pus3 PE=3 SV=1
Length = 491
Score = 241 bits (615), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 132/304 (43%), Positives = 183/304 (60%), Gaps = 35/304 (11%)
Query: 81 KRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLVGDKKESQYSRCGRTDKG 140
KR+VA K+ Y G F+GFA++ E T+E+ + KA K L + D K + Y + GRTDKG
Sbjct: 84 KRHVAFKLSYVGWPFFGFAAQDCSEETIENYLIKAFLKTSL-IPDIKTANYFKSGRTDKG 142
Query: 141 VSSVGQVIALYLRSNLK---------------ISGANTGSSGEIVEE------------- 172
VS+ GQVI+LY+RSNLK IS + E+ +
Sbjct: 143 VSAYGQVISLYVRSNLKEGEGIIPPKDQSGGPISNRTKSNKTELTKNNDNEKARKGNKKS 202
Query: 173 -QHEGEIDYVRVLNRVLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMES 231
+ + E+ Y+++LN VLP +IRIL W P P F+ARFS LSR YKYFF GL++ M+
Sbjct: 203 IEDDEELPYIKMLNGVLPPEIRILAWAPVPFHFNARFSTLSRTYKYFFNPNGLDLNLMKE 262
Query: 232 AGIKLIGEHDFRNFCKMDATNVHNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQ 291
A +GEH++ NFCK+D NV ++ R I F+I + ++L+V I+G AFLWHQ
Sbjct: 263 ASKLYLGEHNYINFCKIDV-NVKSFMRVILQFDI----EKVENSELYVATIKGFAFLWHQ 317
Query: 292 VRCMVAVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSS 351
+RCM+AVLFL+G+ + ++I LLDTNKT KP Y M+SEVPLVL C ++DI F+ S
Sbjct: 318 IRCMMAVLFLIGQKKANISLITQLLDTNKTITKPPYEMASEVPLVLFDCGYDDIDFIYES 377
Query: 352 DAGE 355
E
Sbjct: 378 SVQE 381
>D0MR40_PHYIT (tr|D0MR40) tRNA pseudouridine synthase, putative OS=Phytophthora
infestans (strain T30-4) GN=PITG_00558 PE=3 SV=1
Length = 510
Score = 241 bits (615), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 123/286 (43%), Positives = 176/286 (61%), Gaps = 19/286 (6%)
Query: 76 MSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLVGDKKESQYSRCG 135
MS+++ R VA+K +Y G+++ GFA + M TVE + +AL + +L + + ++ YSRCG
Sbjct: 67 MSNYTMRAVAVKFLYLGEKYAGFARQDHMPETVERYLLEALVRSKL-IENIDDAGYSRCG 125
Query: 136 RTDKGVSSVGQVIALYLRSNL----------KISGANTGSSGEIV----EEQHEGEIDYV 181
RTD+GVS+ GQV+AL +RSNL I G ++ EE+ E+DY
Sbjct: 126 RTDRGVSAFGQVVALRVRSNLPATAELLSAASIDDVRPGEKFQVRLATGEEKTLTEVDYA 185
Query: 182 RVLNRVLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHD 241
+NR LP DIR+ +F ARF C +R Y+YFF + L+I M +A L+G+HD
Sbjct: 186 SHINRALPADIRVYAVASCRPEFSARFDCKARMYRYFFVRRDLDIEKMRTAAQYLVGKHD 245
Query: 242 FRNFCKMDATNVHNYRRHITMFEIFPTDVRYGGN---QLWVIKIRGSAFLWHQVRCMVAV 298
FRNFC++D N H + R++ FEI + + Q++ ++ G AFLWHQVRCMV V
Sbjct: 246 FRNFCRIDP-NCHVFERNVRSFEIVECPGQRADDPSQQMYRCEVFGRAFLWHQVRCMVEV 304
Query: 299 LFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFED 344
LFL+G G E P++I LLD +TPRKPQY M+S++PLVL C F D
Sbjct: 305 LFLIGSGREEPSIIPKLLDIAQTPRKPQYDMASDLPLVLHDCYFAD 350
>G5BB54_HETGA (tr|G5BB54) tRNA pseudouridine synthase OS=Heterocephalus glaber
GN=GW7_10329 PE=3 SV=1
Length = 448
Score = 241 bits (614), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 132/295 (44%), Positives = 173/295 (58%), Gaps = 12/295 (4%)
Query: 76 MSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLVGDKKESQYSRCG 135
S HS+R+VAL++ Y G + GFAS+ + T+E ++F AL K RL V ++ S Y RCG
Sbjct: 25 FSAHSQRHVALRIAYLGWAYQGFASQENTDNTIEEKLFVALTKTRL-VESRQTSNYHRCG 83
Query: 136 RTDKGVSSVGQVIALYLRSNLK--ISGANTGSSGEIVEEQHEGEIDYVRVLNRVLPNDIR 193
RTDKGVS+ GQVI+L LRS + E+ ++ E Y +L+RVLP DIR
Sbjct: 84 RTDKGVSAFGQVISLDLRSQFPRGKDSKDLNLKDEVSDDAKEAR--YTHILSRVLPPDIR 141
Query: 194 ILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMDATN- 252
+L W P F ARFSCL Y YFF LN M A K +G H FRN CKMD N
Sbjct: 142 VLAWAPVECSFSARFSCLEHTYHYFFPCADLNSVRMNYAAQKYVGTHVFRNLCKMDVANG 201
Query: 253 VHNYRRHITMFEIFPTDVRYGGN------QLWVIKIRGSAFLWHQVRCMVAVLFLVGKGL 306
V N++R I ++ G QL +++ G AFL+HQVRCM+A+LFL+G+G+
Sbjct: 202 VINFQRTILSAQVQLVGQSLGEERWQEPFQLCQLEVTGQAFLYHQVRCMMAILFLIGQGM 261
Query: 307 ESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAGEALRIHL 361
E P VID LL K P+KPQY M+ E PLVL C+FE+IK++ E HL
Sbjct: 262 EKPEVIDELLKIEKNPQKPQYSMAVEFPLVLYDCKFENIKWIYDQVVQEFNVTHL 316
>E6ZHF8_DICLA (tr|E6ZHF8) tRNA pseudouridine synthase OS=Dicentrarchus labrax
GN=PUS3 PE=3 SV=1
Length = 472
Score = 240 bits (612), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 138/357 (38%), Positives = 200/357 (56%), Gaps = 18/357 (5%)
Query: 76 MSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLVGDKKESQYSRCG 135
S H +R+VAL++ Y G + GFA + + TVE+ +F+AL K RL + D++ S Y RCG
Sbjct: 65 FSAHPRRHVALRLAYLGWSYQGFAVQENTDNTVEARLFEALLKTRL-IQDRQSSNYHRCG 123
Query: 136 RTDKGVSSVGQVIALYLRSNLKISGANTGSSGEI-VEEQHEG---EIDYVRVLNRVLPND 191
RTDKGVS+ QVI + LRS G + V +++ E+ YV++LNRVLP D
Sbjct: 124 RTDKGVSAFSQVITIDLRSTQFCGGLGVTLPENVDVRSKNKASGSELPYVKMLNRVLPQD 183
Query: 192 IRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMDAT 251
IRIL W PA F ARF C SR Y+Y+F + L++ M A + G HDFRN CKMD
Sbjct: 184 IRILDWAPAAEGFSARFDCQSRTYRYYFPRGSLDVALMAEAAKRYEGTHDFRNLCKMDVG 243
Query: 252 N-VHNYRRHITMFEIFPTDVRYGGN----QLWVIKIRGSAFLWHQVRCMVAVLFLVGKGL 306
N V + R I + P ++ + +L++ +I+G AFL+HQVRCM+A+L L+G+ L
Sbjct: 244 NGVLQFERTILSASVKPVQPQHVSSTDQYELFMFEIKGLAFLYHQVRCMMALLLLIGQKL 303
Query: 307 ESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAGEALRIHLVNECQ 366
E+P +I+ L+D PRKPQY M+ + PLVL C FE + + ++ H+++ Q
Sbjct: 304 EAPEIINQLMDVQSNPRKPQYSMAVDYPLVLYDCHFEGLSWQQENEEVN----HVLSALQ 359
Query: 367 TFQLQAAVFHEALLNCVPLLHDQSLPPSRGT----TKKKASYVPLMSRPTEPSYEER 419
Q+AV L + L S ++ +Y PL+ RP S E R
Sbjct: 360 QHWTQSAVKTHVLHGMIRGLEAIGGVSSNHCWLVEGSRQRNYRPLLERPCCESLESR 416
>C4YR49_CANAW (tr|C4YR49) tRNA pseudouridine synthase OS=Candida albicans (strain
WO-1) GN=CAWG_04548 PE=3 SV=1
Length = 491
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 127/290 (43%), Positives = 179/290 (61%), Gaps = 22/290 (7%)
Query: 77 SHHSKRYVALKVMYFGKRFYGFASEAQMEPT----VESEIFKALAKIRLLVGDKKESQYS 132
S + R+VA K Y G + G A Q+EPT VE KALAK++L+ +E ++S
Sbjct: 127 SKQNMRFVAFKFAYLGWNYNGLA--LQLEPTPLPTVEEVFLKALAKVKLIKEPIEEVKFS 184
Query: 133 RCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDYVRVLNRVLPNDI 192
RCGRTDKGVS++ QVI++ +RSN+ + + ++ EIDY+ VLN LP+DI
Sbjct: 185 RCGRTDKGVSAMNQVISINVRSNITLENQSNPEFDDL-------EIDYISVLNANLPSDI 237
Query: 193 RILGWC-PAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMDAT 251
++ C P DF ARFSCLSR Y+Y F K+ L+I M G HDFRNFCK+D +
Sbjct: 238 KVHSICLRPPPDFDARFSCLSRHYRYIFRKQDLDIELMNQGAKLYQGIHDFRNFCKLDGS 297
Query: 252 NVHNYRRHITMF--EIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLESP 309
+ IT F EI+ + + + + ++GSAFLWHQVRCMVA+LF +G+GLESP
Sbjct: 298 ------KQITNFVREIYQSQIIHLHQDYYCFDLKGSAFLWHQVRCMVAILFTIGQGLESP 351
Query: 310 NVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAGEALRI 359
++I L+DTNK P KPQY M+ ++PLVL CEF +++ + D + R+
Sbjct: 352 SIITDLMDTNKFPTKPQYEMAHDIPLVLYDCEFPSMEWKSTDDEYKLHRV 401
>A5DGM5_PICGU (tr|A5DGM5) tRNA pseudouridine synthase OS=Meyerozyma
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 /
JCM 1539 / NBRC 10279 / NRRL Y-324) GN=PGUG_02426 PE=3
SV=2
Length = 431
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 146/354 (41%), Positives = 194/354 (54%), Gaps = 51/354 (14%)
Query: 14 LQARVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRKSEEKIEKMTGYNT 73
L R+KELE S ++S E KK H S E +K + K +
Sbjct: 24 LLDRIKELE-------SMTSESTSVETTKKNHTSNEPPA------KKPKRKFD------- 63
Query: 74 RFMSHHSKRYVALKVMYFGKRFYG--FASEAQMEPTVESEIFKALAKIRLLV-GDKKESQ 130
S HSKR++AL+ Y G + G F +E PTVE EI +AL K RL+ D
Sbjct: 64 --FSGHSKRFIALRFAYAGWNYNGLAFQNEPTPLPTVEQEILEALTKARLITEPDPLVCN 121
Query: 131 YSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQH------EGEIDYVRVL 184
+SRCGRTDKGVS++ QVI+L +RS L EEQ + EI Y+ +L
Sbjct: 122 FSRCGRTDKGVSAMNQVISLEVRSGL-------------TEEQRSQPGADQKEIPYITIL 168
Query: 185 NRVLPNDIRILGWC-PAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFR 243
N +LP IRI G C P F ARFSC R Y+Y F + L++ AM A K GEHDFR
Sbjct: 169 NSLLPPSIRITGICLNPPPGFDARFSCSYRHYRYIFRRYDLDLEAMTEAAKKYEGEHDFR 228
Query: 244 NFCKMDAT-NVHNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLV 302
NFCK+D + + NY R I I P Y +V ++G+AFLWHQVRCM+ +LFLV
Sbjct: 229 NFCKIDGSKQITNYGRTILSANIMPLKDDY-----YVFDLKGTAFLWHQVRCMMGILFLV 283
Query: 303 GKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAGEA 356
G+ LE P+++D LL+ + P KP Y M+++VPLVL C F DI++ ++D A
Sbjct: 284 GRKLEKPSLVDELLNVDVNPNKPNYDMANDVPLVLYDCVFPDIEWTAATDTAGA 337
>G0V9E7_NAUCC (tr|G0V9E7) tRNA pseudouridine synthase OS=Naumovozyma castellii
(strain ATCC 76901 / CBS 4309 / NBRC 1992 / NRRL
Y-12630) GN=NCAS0B04790 PE=3 SV=1
Length = 444
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 131/311 (42%), Positives = 192/311 (61%), Gaps = 28/311 (9%)
Query: 76 MSHHSKRYVALKVMYFGKRFYGFA--SEAQMEPTVESEIFKALAKIRLLVG-DKKESQYS 132
S HS R+VAL+ Y G + G A +E PT+E +I +AL RL+ + +E Q+S
Sbjct: 80 FSQHSTRFVALRFAYLGWNYNGLAIQNEPTPLPTIEGKILEALHISRLVPSMNPREYQFS 139
Query: 133 RCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDYVRVLNRVLPNDI 192
RCGRTDKGVS++ QVI+L +RSNL ++ EI YV +LN++LP+DI
Sbjct: 140 RCGRTDKGVSAMNQVISLRVRSNLT-------PEEQLDPANDRREIKYVHILNQLLPDDI 192
Query: 193 RILGWCPAPVD-FHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMDAT 251
R+ C P + F ARFSC SR YKY F +GL+I M+ +GEHDFRNFCK+D +
Sbjct: 193 RVSAVCLRPPEGFDARFSCESRHYKYLFSNDGLDISRMQEGATLFLGEHDFRNFCKLDGS 252
Query: 252 -NVHNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLESPN 310
+ NY+R + +I + + L+ + + GSAFLWHQVRCM+A LFL+G+GLE P+
Sbjct: 253 KQITNYKRSVISAKIL-----HIRDDLYCLDLVGSAFLWHQVRCMMAHLFLIGQGLEEPS 307
Query: 311 VIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFM-------CSSDAGEALRIHLVN 363
+I+ + D KTP+KP Y M+S++PL+L C+F +++++ S G+A+ +N
Sbjct: 308 LINDMFDIVKTPQKPIYDMASDIPLLLYDCKFPEMEWLESNLDDYSSIKYGKAVSALALN 367
Query: 364 ECQTFQLQAAV 374
+QL+AAV
Sbjct: 368 ----YQLRAAV 374
>M3JU58_CANMA (tr|M3JU58) tRNA pseudouridine synthase (Fragment) OS=Candida
maltosa Xu316 GN=G210_3337 PE=3 SV=1
Length = 412
Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 125/289 (43%), Positives = 178/289 (61%), Gaps = 17/289 (5%)
Query: 77 SHHSKRYVALKVMYFGKRFYG--FASEAQMEPTVESEIFKALAKIRLLVGDKKESQYSRC 134
S R+VA + Y G + G F +E PTVE ALAK++L+ E YSRC
Sbjct: 52 SKQHMRFVAFRFAYLGWNYNGLAFQTEPTPLPTVEETFLNALAKVKLVKEPISEVDYSRC 111
Query: 135 GRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDYVRVLNRVLPNDIRI 194
GRTDKGVS++ QVI++ +RSNL + + + EIDY+ ++N LP DIR+
Sbjct: 112 GRTDKGVSAMNQVISINVRSNLPLEDQSNP-------DLDSSEIDYISIMNANLPPDIRV 164
Query: 195 LGWC-PAPVDFHARFSCLSREYKYFFWK-EGLNIPAMESAGIKLIGEHDFRNFCKMDAT- 251
C P DF+ARFSC R Y+YFF K GL+I M +A +G HDFRNFCK+D +
Sbjct: 165 HSICLRPPPDFNARFSCTLRHYRYFFKKVPGLDIEKMNTAAEMYVGVHDFRNFCKLDGSK 224
Query: 252 NVHNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLESPNV 311
+ N+ R EI+ + + + + + +RGSAFLWHQVRCMVA+LF +G+GLE P++
Sbjct: 225 QISNFMR-----EIYTSRILHLHDDYYCFDLRGSAFLWHQVRCMVAMLFCIGQGLEKPDL 279
Query: 312 IDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAGEALRIH 360
I LLD K P KPQY M++++PLVL CEF ++++ ++DA + R++
Sbjct: 280 IRDLLDMTKFPTKPQYEMANDIPLVLYDCEFPEMEWKSNNDAFKFKRLN 328
>Q59N30_CANAL (tr|Q59N30) tRNA pseudouridine synthase OS=Candida albicans (strain
SC5314 / ATCC MYA-2876) GN=DEG1 PE=3 SV=1
Length = 489
Score = 237 bits (604), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 128/293 (43%), Positives = 179/293 (61%), Gaps = 25/293 (8%)
Query: 77 SHHSKRYVALKVMYFGKRFYGFASEAQMEPT----VESEIFKALAKIRLLVGDKKESQYS 132
S + R+VA K Y G + G A Q+EPT VE KALAK++L+ +E ++S
Sbjct: 125 SKQNMRFVAFKFAYLGWNYNGLA--LQLEPTPLPTVEEVFLKALAKVKLIKEPIEEVKFS 182
Query: 133 RCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDYVRVLNRVLPNDI 192
RCGRTDKGVS++ QVI++ +RSN+ + + ++ EIDY+ VLN LP+DI
Sbjct: 183 RCGRTDKGVSAMNQVISINVRSNITLENQSNPEFDDL-------EIDYISVLNANLPSDI 235
Query: 193 RILGWC-PAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMDAT 251
++ C P DF ARFSCLSR Y+Y F K+ L+I M G HDFRNFCK+D +
Sbjct: 236 KVHSICLRPPPDFDARFSCLSRHYRYIFRKQDLDIELMNQGAKLYQGIHDFRNFCKLDGS 295
Query: 252 NVHNYRRHITMF--EIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLESP 309
+ IT F EI+ + + + + ++GSAFLWHQVRCMVA+LF +G+ LESP
Sbjct: 296 ------KQITNFVREIYQSQIIHLHQDYYCFDLKGSAFLWHQVRCMVAILFTIGQSLESP 349
Query: 310 NVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAGEALRIHLV 362
++I L+DTNK P KPQY M+ ++PLVL CEF +++ + D R+H V
Sbjct: 350 SIITDLMDTNKFPTKPQYEMAHDIPLVLYDCEFPSMEWKSTDD---EYRLHRV 399
>F9X010_MYCGM (tr|F9X010) Uncharacterized protein OS=Mycosphaerella graminicola
(strain CBS 115943 / IPO323) GN=MYCGRDRAFT_89199 PE=3
SV=1
Length = 534
Score = 236 bits (603), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 133/338 (39%), Positives = 185/338 (54%), Gaps = 56/338 (16%)
Query: 77 SHHSKRYVALKVMYFGKRFYGF---ASEAQMEPTVESEIFKALAKIRLLVG----DKKES 129
S ++ R +ALK Y G + G+ + PT+E E+++AL K+RL+ +K E
Sbjct: 55 SRYNTRLIALKFAYLGGAYNGYEHHTNNTTPLPTIEEELWRALRKVRLIFPAFKPEKSED 114
Query: 130 -------QYSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEG------ 176
+YS+CGRTD+GVS+ GQV+ + +RSN + + E+ EE
Sbjct: 115 DVEWEGCEYSKCGRTDRGVSAFGQVVGIRVRSNRPKPSPRSAENAEVEEETAADAAKQDS 174
Query: 177 ---------------EIDYVRVLNRVLPNDIRILGWCPAP-VDFHARFSCLSREYKYFFW 220
E+ Y+++LNRVLP+DIRIL WCP P DF ARF+C R Y+YFF
Sbjct: 175 TPDDTLEKPFDPVADELPYIQLLNRVLPSDIRILAWCPTPPSDFSARFNCKERRYRYFFT 234
Query: 221 KEG-------------------LNIPAMESAGIKLIGEHDFRNFCKMDAT-NVHNYRRHI 260
L+I AM+ A K G HDFRNFCK+DA+ + N+ R I
Sbjct: 235 NPAYMPLPGSSASKRRGAEDGWLDISAMQQAAAKYEGLHDFRNFCKVDASKQIGNFERRI 294
Query: 261 TMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLESPNVIDMLLDTNK 320
I + G +L+ ++RGSAFLWHQVR +VAV+FLVG+G E P+V+D LLD K
Sbjct: 295 FHAGIHKVEGTGEGPELYWFEVRGSAFLWHQVRHLVAVVFLVGQGYEDPSVVDYLLDVEK 354
Query: 321 TPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAGEALR 358
TP KP Y M+S+VPLVL C F + + + + D G R
Sbjct: 355 TPGKPAYEMASDVPLVLWDCIFPNAEALANGDHGSGER 392
>G3NBR7_GASAC (tr|G3NBR7) tRNA pseudouridine synthase (Fragment) OS=Gasterosteus
aculeatus GN=PUS3 PE=3 SV=1
Length = 462
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 138/362 (38%), Positives = 204/362 (56%), Gaps = 26/362 (7%)
Query: 76 MSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLVGDKKESQYSRCG 135
S + +R+VAL++ Y G + GFA + + TVE+ +F+AL K RL + +++ S Y RCG
Sbjct: 52 FSANPRRHVALRLAYLGWSYQGFAVQENTDNTVEARLFEALLKTRL-IQERQTSNYHRCG 110
Query: 136 RTDKGVSSVGQVIALYLRSNLKISGAN-TGSSGEIVEEQHEG---EIDYVRVLNRVLPND 191
RTDKGVS+ QVI + LRS G T ++V +++ E+ YV++LNRVLP+D
Sbjct: 111 RTDKGVSAFSQVITIDLRSTQFCGGLGVTVPEHDVVSAKNKANGCELPYVKMLNRVLPHD 170
Query: 192 IRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMDAT 251
IR+L W PA F ARF C SR Y+Y+F + L++ M A + G +DFRN CKMD
Sbjct: 171 IRVLDWAPAAEGFSARFDCQSRTYRYYFPRGSLDVTLMADAAKRYEGTYDFRNLCKMDVG 230
Query: 252 N-VHNYRRHITMFEIFPT--DVRYGGNQ--LWVIKIRGSAFLWHQVRCMVAVLFLVGKGL 306
N V + R I + P + G +Q L++ +I+G FL+HQVRCM+A+L L+G+ L
Sbjct: 231 NGVLQFERTILSASVKPVRPQLVSGVDQYDLFMFEIKGLGFLYHQVRCMMALLLLIGQKL 290
Query: 307 ESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAGEALRIHLVNECQ 366
E+P +I+ LLD PRKPQY M+ + PLVL C FE + + ++ H++ Q
Sbjct: 291 EAPEIINQLLDVQSNPRKPQYSMAVDYPLVLHDCHFEGLSWKQETEE----VTHVLATLQ 346
Query: 367 TFQLQAAVFHEALLNCVPLLHDQSLPPSRGTT---------KKKASYVPLMSRPTEPSYE 417
Q+AV L + L S + G + ++ +Y PL+ RP S E
Sbjct: 347 QHWTQSAVRTHVLHGMIQSLESTS---TGGVSSNHCLLIEGSRQRNYRPLLERPCCESLE 403
Query: 418 ER 419
R
Sbjct: 404 SR 405
>C1MP05_MICPC (tr|C1MP05) tRNA pseudouridine synthase (Fragment) OS=Micromonas
pusilla (strain CCMP1545) GN=MICPUCDRAFT_3321 PE=3 SV=1
Length = 281
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 126/278 (45%), Positives = 164/278 (58%), Gaps = 15/278 (5%)
Query: 76 MSHHSKRYVALKVMYFGKRFYGFASEAQ-----MEPTVESEIFKALAKIRLLVGDKK--E 128
S + R++AL V Y G ++GFAS+ PT+E +F AL + RL+ D +
Sbjct: 10 FSKYPTRHIALHVAYAGWDYHGFASQGNDAAEARSPTIEGALFAALKRTRLIADDATWTD 69
Query: 129 SQYSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDYVRVLNRVL 188
Y+RCGRTD GVS++GQ+++L RS G + E+DY +LNR L
Sbjct: 70 VDYTRCGRTDAGVSAMGQLVSLRARSR----GTRYTPPSPPPPAKDADELDYPSILNRAL 125
Query: 189 PNDIRILGWCPAPVDFHARFSCLSREYKYFFW--KEGLNIPAMESAGIKLIGEHDFRNFC 246
P+DIR+ GWC F ARF C R YKYFF GL++ M A +L GEHDFRNFC
Sbjct: 126 PDDIRVTGWCYVDEAFSARFDCEWRHYKYFFTLHDGGLDLEKMRDAARRLEGEHDFRNFC 185
Query: 247 KMDATNVHNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGL 306
KMD NVHN+ R I E + +L I ++G+AFLWHQVRC+ AVLFLVG G
Sbjct: 186 KMDVKNVHNHARRI--LESASSSASGAPPRLCYISVKGTAFLWHQVRCVAAVLFLVGLGK 243
Query: 307 ESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFED 344
E P+VID LLD KT RKPQY M+ E PL+L + F++
Sbjct: 244 EPPSVIDDLLDLEKTTRKPQYEMAPEEPLLLWASGFDE 281
>G6CRU9_DANPL (tr|G6CRU9) Putative pseudouridylate synthase OS=Danaus plexippus
GN=KGM_18004 PE=3 SV=1
Length = 504
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 136/341 (39%), Positives = 193/341 (56%), Gaps = 23/341 (6%)
Query: 60 KSEEKIEKMTGYNTRFMSHHSK---RYVALKVMYFGKRFYGFASEAQMEPTVESEIFKAL 116
KSE E + GYN + +K R V L ++YFG ++G A + T+E +F AL
Sbjct: 51 KSEPVTENIQGYNNQRKFDFTKCTFRRVLLHIIYFGWDYHGLAVQEDSTHTIEHYLFNAL 110
Query: 117 AKIRLLVGDKKESQYSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEG 176
K L+ +++SQY RCGRTDKGVS+ GQ+I++ LRS L+ S + S
Sbjct: 111 VK-SCLIESREQSQYHRCGRTDKGVSAFGQIISISLRSKLEPSSTDYSS----------- 158
Query: 177 EIDYVRVLNRVLPNDIRILGWCPAP---VDFHARFSCLSREYKYFFWKEGLNIPAMESAG 233
EI Y ++LNR+ P DI+ + W P P DF ARF C R+YKY+F K LNI AM A
Sbjct: 159 EIQYCKILNRLFPRDIKAVAWMPIPDDRPDFSARFDCKGRQYKYYFPKSNLNITAMREAC 218
Query: 234 IKLIGEHDFRNFCKMDATN-VHNYRRHITMFEIFPTDVRY-GGNQLWVIKIRGSAFLWHQ 291
+LIG HDFR+ CKMD N V + R + +I D ++ + I G+AFLWHQ
Sbjct: 219 RQLIGSHDFRHLCKMDVGNGVTEFTRRVVSADIIALDKDCEQTTSMYALVIEGNAFLWHQ 278
Query: 292 VRCMVAVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSS 351
+RC++ VL LVG+G ESP +I LLD PRKPQY M+ ++PL L C + D+K
Sbjct: 279 IRCIMGVLLLVGQGHESPGIIAELLDVEANPRKPQYNMALDLPLNLFCCRY-DVKSRWVY 337
Query: 352 DAGEALRI--HLVNECQTFQLQAAVFHEALLNCVPLLHDQS 390
D E I +L + + +++ + +AL + +L+D S
Sbjct: 338 DDEELKYIITNLQADWTLYNVKSTMIKDALEHLEGVLYDLS 378
>G8BHM4_CANPC (tr|G8BHM4) tRNA pseudouridine synthase OS=Candida parapsilosis
(strain CDC 317 / ATCC MYA-4646) GN=CPAR2_501740 PE=3
SV=1
Length = 440
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 137/356 (38%), Positives = 198/356 (55%), Gaps = 30/356 (8%)
Query: 77 SHHSKRYVALKVMYFGKRFYGFAS--EAQMEPTVESEIFKALAKIRLLVGDKKESQYSRC 134
S H R+VAL+ Y G + G A E PTVE I K L+KI+L+ + ++SRC
Sbjct: 77 SKHDLRFVALRFAYLGWNYNGLAYQFEPTPLPTVEETILKTLSKIKLIPEPIDQVEFSRC 136
Query: 135 GRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDYVRVLNRVLPNDIRI 194
GRTDKGVS++ QVI++ LRSNL + ++ + EIDY+ ++N LP+DI++
Sbjct: 137 GRTDKGVSAMNQVISIKLRSNLTPEEQQSSTNDD-------REIDYLTIINANLPSDIKV 189
Query: 195 LGWC-PAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMDATNV 253
C P DF ARFSC +R Y+Y F L+I AM A G+HDFRNFCK+D +
Sbjct: 190 HSICLHPPADFDARFSCKNRHYRYLFKSSNLDIDAMNKAAEYYQGQHDFRNFCKLDGS-- 247
Query: 254 HNYRRHITMFE--IFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLESPNV 311
+ IT FE I+ + + + + L+ + G+AFLWHQVRCMVA+LFLVG+ LE P +
Sbjct: 248 ----KQITNFERFIYSSKIIHLEDDLYCFDLVGTAFLWHQVRCMVAILFLVGQHLEKPEI 303
Query: 312 IDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAGEALRIHLVNECQTFQL- 370
+ L+D K P KPQY M++++PLVL CEF +++ + + RI + + L
Sbjct: 304 VTDLMDITKYPTKPQYEMANDIPLVLYDCEFPPMQWKQFDNEYKFNRIMNGFKGMCYDLS 363
Query: 371 ---------QAAVFHEALLNCVPLLHDQSLPPSRGTTKKKASYVPLMSRPTEPSYE 417
Q VF E P ++ ++P G + A Y PL +R +YE
Sbjct: 364 IKTKMSSIMQNLVFKEQSNANAPAVN--TVPLGDGVGRAFAKYTPLANRERTDNYE 417
>F0Y9R3_AURAN (tr|F0Y9R3) tRNA pseudouridine synthase (Fragment) OS=Aureococcus
anophagefferens GN=AURANDRAFT_11850 PE=3 SV=1
Length = 266
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 130/279 (46%), Positives = 173/279 (62%), Gaps = 32/279 (11%)
Query: 76 MSHHSKRYVALKVMYFGKRFYGFASE---AQMEPTVESEIFKALAKIRLLVGDKKESQYS 132
MS + +R +AL + Y G + GFA + TVE ++F AL K LV ++ YS
Sbjct: 11 MSRYEQRCIALWISYEGGAYSGFAEQNIPGAGVDTVERQLFAALKKT-CLVESRESCGYS 69
Query: 133 RCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDYVRVLNRVLPNDI 192
RCGRTDKGVS++GQV+ L +RS + +GE +DYV +LNRVLP+D+
Sbjct: 70 RCGRTDKGVSALGQVVGLRVRSAAR--------AGE--------PLDYVNMLNRVLPDDV 113
Query: 193 RILGWCPAPVDFHARFSCLSREYKYFFWKEGLN------IPAMESAGIKLIGEHDFRNFC 246
R L W P +F ARFSC SR Y+YFF N +PAM +A +L+G+HDFRNFC
Sbjct: 114 RALAWRPVVPEFSARFSCASRTYRYFFPATSPNTGAAYDVPAMAAAAARLVGDHDFRNFC 173
Query: 247 KMDATNVHNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGL 306
KMD +V N+RR ++ DVR G+ + +I G AFLWH VR +VAVLFLVG+GL
Sbjct: 174 KMDVLHVKNFRR-----VVYAADVRKTGDGFF-FEIHGQAFLWHMVRSLVAVLFLVGEGL 227
Query: 307 ESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDI 345
E P V+D LLD +TPRKPQY+++ E PLVL C F+ +
Sbjct: 228 EPPAVVDALLDVARTPRKPQYLIADERPLVLHDCAFDTL 266
>G8ZR64_TORDC (tr|G8ZR64) tRNA pseudouridine synthase OS=Torulaspora delbrueckii
(strain ATCC 10662 / CBS 1146 / NBRC 0425 / NCYC 2629 /
NRRL Y-866) GN=TDEL0C01170 PE=3 SV=1
Length = 437
Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 126/279 (45%), Positives = 177/279 (63%), Gaps = 19/279 (6%)
Query: 76 MSHHSKRYVALKVMYFGKRFYGFA--SEAQMEPTVESEIFKALAKIRLLVG-DKKESQYS 132
S +S+R++ALK Y G + G A E PTVE I +AL K +L+ D + ++S
Sbjct: 78 FSKYSRRFIALKFAYLGWNYNGLAVQKEPTPLPTVEGVIIEALNKCKLVPSLDPHDFRFS 137
Query: 133 RCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEG-EIDYVRVLNRVLPND 191
RCGRTDKGVS++ QVI+L++RSNL S E + +++ EI YV +LN++LP D
Sbjct: 138 RCGRTDKGVSAMSQVISLFVRSNL--------SEEEQSDPKNDSKEIQYVNILNQLLPED 189
Query: 192 IRILGWC-PAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMDA 250
IR+ P F ARFSC R Y+Y F K+GL++ M+ A GEHDFRNFCK+D
Sbjct: 190 IRVSAVSLRPPKGFDARFSCQYRHYRYLFHKDGLDVGRMDQAAALFKGEHDFRNFCKLDG 249
Query: 251 T-NVHNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLESP 309
+ + NY R+I +I P + + GSAFLWHQVRCM+A LFLVG+GLE+
Sbjct: 250 SKQITNYARNIISAKIIPL-----SGDFYCFDLIGSAFLWHQVRCMMANLFLVGQGLENV 304
Query: 310 NVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFM 348
++I +LD +KTPRKP Y M+S++PL+L C+F DI+++
Sbjct: 305 SLISDMLDVDKTPRKPIYDMASDIPLILYDCKFPDIEWV 343
>N6UJE4_9CUCU (tr|N6UJE4) Uncharacterized protein (Fragment) OS=Dendroctonus
ponderosae GN=YQE_01756 PE=4 SV=1
Length = 818
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 130/300 (43%), Positives = 181/300 (60%), Gaps = 24/300 (8%)
Query: 65 IEKMTGYNTRFMSHHSK--------RYVALKVMYFGKRFYGFASEAQMEPTVESEIFKAL 116
I K T ++T+ SH S+ R++ L + Y G + GFA + TVE +F+AL
Sbjct: 441 INKAT-HSTKLSSHISQFDFSRCRFRHILLHLYYLGWDYQGFAVQEDSSNTVEFHLFQAL 499
Query: 117 AKIRLLVGDKKESQYSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEG 176
K L+ ++ S Y RCGRTDKGVSS GQVI++ +RS K++G + S EI
Sbjct: 500 TKT-CLIKERTSSNYHRCGRTDKGVSSFGQVISIDVRS--KLAGEDNDLSKEI------- 549
Query: 177 EIDYVRVLNRVLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKL 236
DY RVLNRVLP +I+ + W P +F ARF+C SR YKY+F K L+I M A L
Sbjct: 550 --DYCRVLNRVLPANIQCVAWAPVEDNFSARFNCTSRTYKYYFPKGKLDIDKMIEASTHL 607
Query: 237 IGEHDFRNFCKMDATN-VHNYRRHITMFEIFPTDVRYGGNQ--LWVIKIRGSAFLWHQVR 293
IG HDFRNF KMD N V + R I F I P D ++ +++ I+G+AF+WHQ+R
Sbjct: 608 IGSHDFRNFAKMDVGNGVVQFIRKIFDFTITPWDASDMRSEYSIYIATIKGNAFIWHQIR 667
Query: 294 CMVAVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDA 353
++ +LFL+G E P++I LLD K PRKP Y M+SE+PL L C++ED+++ S D+
Sbjct: 668 YIMGILFLIGTNREKPSLIPELLDVAKNPRKPDYNMASEIPLNLFFCQYEDVEWQVSQDS 727
>J4W3L2_BEAB2 (tr|J4W3L2) Pseudouridine synthase 3 OS=Beauveria bassiana (strain
ARSEF 2860) GN=BBA_06185 PE=3 SV=1
Length = 776
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 150/396 (37%), Positives = 206/396 (52%), Gaps = 79/396 (19%)
Query: 14 LQARVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRKSEEKIEKMTGYNT 73
L RV++LEAE ++++ K T S G+ ++ E
Sbjct: 14 LVERVRQLEAE---------------LQRRPAAPEPKPTASPHGDAEAAEAPGSTKPKVK 58
Query: 74 RFM--SHHSKRYVALKVMYFGKRFYGFASEA-QMEPTVESEIFKALAKIRLLVGDKKE-- 128
R M S +S R++ALK+ Y GK + GF +A +PT+E E++ AL K L+ + ++
Sbjct: 59 RKMDPSKYSTRFIALKLAYLGKNYGGFEFQAVGNQPTIEEELWNALTKACLIFPEDEKIV 118
Query: 129 ----SQYSRCGRTDKGVSSVGQVIALYLRSNLKISG-ANTGSSGEIVEEQHEG------- 176
+YS+CGRTD+GVS+ GQVI + +RSN + A G E+Q EG
Sbjct: 119 DFNICEYSKCGRTDRGVSAFGQVIGIRVRSNKPLPKEAKQTVDGVATEDQTEGQEQEAKE 178
Query: 177 --------EIDYVRVLNRVLPNDIRILGWCPAPV-DFHARFSCLSREYKYFFWKEG---- 223
EI Y VLNR+LP +IRIL WCP+P DF ARFSC R+Y+YFF +
Sbjct: 179 RPFDPIADEIPYPMVLNRLLPPEIRILAWCPSPPPDFSARFSCRERQYRYFFTQPAFAPE 238
Query: 224 -------------LNIPAMESAGIKLIGEHDFRNFCKMD-ATNVHNYRRHITMFEIF--- 266
L+I AM A + GE DFRN CK+D A + N+ R I +I
Sbjct: 239 PSDDGGGGAKSGWLDIAAMRDAAKRFEGEQDFRNVCKVDPAKLITNWSRTIFESDIVEVQ 298
Query: 267 ---------------PTDVRYGGN--QLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLESP 309
P + GG +++ +RGSAFLWHQ+R MVAVLFLVG+GLE P
Sbjct: 299 DAATALPYVTGAGFSPAHLEKGGKFPRVYYFHVRGSAFLWHQIRHMVAVLFLVGQGLEKP 358
Query: 310 NVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDI 345
+++ LLD +K PRKP Y M+ EVPLVL C F D+
Sbjct: 359 SIVTELLDVDKYPRKPGYAMADEVPLVLWDCVFPDL 394
>H8X0L9_CANO9 (tr|H8X0L9) tRNA pseudouridine synthase OS=Candida orthopsilosis
(strain 90-125) GN=CORT_0B01900 PE=3 SV=1
Length = 468
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 142/398 (35%), Positives = 211/398 (53%), Gaps = 35/398 (8%)
Query: 35 SHIHEMEKKLHVSGEKNTGSIKGNRKSEEKIEKMTGYNTRFMSHHSKRYVALKVMYFGKR 94
+ I E+E+K + + K + + K +K + S H+ R++AL+ Y G
Sbjct: 67 AKISELEQKTAPTTSPTCTAPKPEIRQKSKKQKQFDW-----SRHNFRFIALRFAYLGWN 121
Query: 95 FYGFAS--EAQMEPTVESEIFKALAKIRLLVGDKKESQYSRCGRTDKGVSSVGQVIALYL 152
+ G A E PTVE I K L+KI+L+ + +SRCGRTDKGVS++ QV+++ L
Sbjct: 122 YNGLAYQFEPTPLPTVEETILKTLSKIKLIPEPIDQVDFSRCGRTDKGVSAMNQVVSIKL 181
Query: 153 RSNLKISGANTGSSGEIVEEQHEGEIDYVRVLNRVLPNDIRILGWC-PAPVDFHARFSCL 211
RSNL ++ + EIDY+ ++N LP+DI++ C P DF ARFSC
Sbjct: 182 RSNLSPEEQQDSTNDD-------KEIDYLTIINANLPSDIKVHSICLHPPPDFDARFSCK 234
Query: 212 SREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMDATNVHNYRRHITMFE--IFPTD 269
+R Y+Y F L+I AM A G+HDFRNFCK+D + + IT FE I+ +
Sbjct: 235 NRHYRYLFKASNLDIEAMNKAAGYYQGQHDFRNFCKLDGS------KQITNFERFIYSSK 288
Query: 270 VRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIM 329
+ + N L+ + G+AFLWHQVRCMVA+LFLVG+ LE P ++ L+D K P KPQY M
Sbjct: 289 IIHLENDLFCFDLIGTAFLWHQVRCMVAILFLVGQHLEKPEIVTDLMDITKYPTKPQYEM 348
Query: 330 SSEVPLVLQSCEFEDIKFMCSSDAGEALRIH--LVNECQTFQLQAA--------VFHEAL 379
++++PLVL CEF + + + + RI C ++ VF +
Sbjct: 349 ANDIPLVLYDCEFPPMDWKQFDNEYKFNRIMNGFKGMCYDLNIRTKMSSIMEDLVFKDQP 408
Query: 380 LNCVPLLHDQSLPPSRGTTKKKASYVPLMSRPTEPSYE 417
P ++ ++P G + A Y PL +R SYE
Sbjct: 409 KATAPAIN--TVPLGDGVGRSFAKYTPLENRERTDSYE 444
>L8HG78_ACACA (tr|L8HG78) tRNA pseudouridine synthase OS=Acanthamoeba castellanii
str. Neff GN=ACA1_153600 PE=3 SV=1
Length = 488
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 136/371 (36%), Positives = 195/371 (52%), Gaps = 33/371 (8%)
Query: 76 MSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLVGDKKESQYSRCG 135
MS + +RY+ALK+ Y G ++ G A + + T+E+ + AL +++L+ D+ S Y+R G
Sbjct: 96 MSRYHQRYIALKLAYLGWQYDGLAVQNDTDNTIETHLIAALKRVKLIT-DRPSSNYNRSG 154
Query: 136 RTDKGVSSVGQVIALYLRSNLKISGA--NTGSSGEI-------VEEQHEGEIDYVRVLNR 186
RTDKGVS++G V RSNLK + G+ I + + E+ Y++++N
Sbjct: 155 RTDKGVSALGNV-----RSNLKPANPIDENGAKAVIYADTPLDTSDPRKEEMPYLKMINS 209
Query: 187 VLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFC 246
LP DI++L W P DF ARFS R YKYFF E L + M A K+ GEHDFR+FC
Sbjct: 210 ALPPDIQVLAWTTVPKDFSARFSTKHRTYKYFFLAENLQLERMREAAKKIEGEHDFRHFC 269
Query: 247 KMDATNVHNYRRHITMFEIFPTDV----RYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLV 302
KMD NVHN+ R I F+I P + ++ + I G AFLWHQVR M A+LFLV
Sbjct: 270 KMDVVNVHNFVRTIYSFDIAPAESGVVPGVAEGSMYTMTICGQAFLWHQVRMMAAILFLV 329
Query: 303 GKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAGEALRIHLV 362
G G E P V+D LLD K +P Y M+SE+PLV +++I++ A +
Sbjct: 330 GSGQEEPTVVDELLDVAKFEGRPHYQMASEIPLVFWEAAYDEIEWTYDPVAVSQVHKVFS 389
Query: 363 NECQTFQLQAAVFHEALLNCVPLLHDQSLPPSRGTTK----------KKASYVPLMSRPT 412
+ +Q AV H L D+ + R K K +V L++R
Sbjct: 390 ERWKWLSIQTAVAHAYRT----FLEDRVVTVGRNEIKWREHAASQPGKPTRHVKLLARGK 445
Query: 413 EPSYEERRAKL 423
+Y R A+L
Sbjct: 446 GDTYAARVARL 456
>N6TMX4_9CUCU (tr|N6TMX4) Uncharacterized protein (Fragment) OS=Dendroctonus
ponderosae GN=YQE_01756 PE=4 SV=1
Length = 791
Score = 234 bits (598), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 137/331 (41%), Positives = 191/331 (57%), Gaps = 32/331 (9%)
Query: 42 KKLHVSGEKNTGSIKGNRKSEEK--------IEKMTGYNTRFMSHHSK--------RYVA 85
K H E+NT + +S E I K T ++T+ SH S+ R++
Sbjct: 383 KTAHHVEEENTVELIARIRSTEAHNIQLQNIINKAT-HSTKLSSHISQFDFSRCRFRHIL 441
Query: 86 LKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLVGDKKESQYSRCGRTDKGVSSVG 145
L + Y G + GFA + TVE +F+AL K L+ ++ S Y RCGRTDKGVSS G
Sbjct: 442 LHLYYLGWDYQGFAVQEDSSNTVEFHLFQALTKT-CLIKERTSSNYHRCGRTDKGVSSFG 500
Query: 146 QVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDYVRVLNRVLPNDIRILGWCPAPVDFH 205
QVI++ +RS K++G + S EI DY RVLNRVLP +I+ + W P +F
Sbjct: 501 QVISIDVRS--KLAGEDNDLSKEI---------DYCRVLNRVLPANIQCVAWAPVEDNFS 549
Query: 206 ARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMDATN-VHNYRRHITMFE 264
ARF+C SR YKY+F K L+I M A LIG HDFRNF KMD N V + R I F
Sbjct: 550 ARFNCTSRTYKYYFPKGKLDIDKMIEASTHLIGSHDFRNFAKMDVGNGVVQFIRKIFDFT 609
Query: 265 IFPTDVRYGGNQ--LWVIKIRGSAFLWHQVRCMVAVLFLVGKGLESPNVIDMLLDTNKTP 322
I P D ++ +++ I+G+AF+WHQ+R ++ +LFL+G E P++I LLD K P
Sbjct: 610 ITPWDASDMRSEYSIYIATIKGNAFIWHQIRYIMGILFLIGTNREKPSLIPELLDVAKNP 669
Query: 323 RKPQYIMSSEVPLVLQSCEFEDIKFMCSSDA 353
RKP Y M+SE+PL L C++ED+++ S D+
Sbjct: 670 RKPDYNMASEIPLNLFFCQYEDVEWQVSQDS 700
>D3BUW1_POLPA (tr|D3BUW1) tRNA pseudouridylate synthase OS=Polysphondylium pallidum
GN=pus3 PE=3 SV=1
Length = 1052
Score = 234 bits (597), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 129/291 (44%), Positives = 177/291 (60%), Gaps = 23/291 (7%)
Query: 81 KRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLVGDKKESQYSR---CGRT 137
KRY+ALKV Y G ++GFA++ E T+E + +AL K L+ D K YS+ GRT
Sbjct: 766 KRYIALKVAYLGWDYHGFAAQQITEETIEGHLIRALQK-TCLINDIKNCNYSKYALSGRT 824
Query: 138 DKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQ---------------HEGEIDYVR 182
DKGVS+ GQVI+LY+RSNL + N +++++ HE E +V+
Sbjct: 825 DKGVSAFGQVISLYVRSNL--TEGNDLIPPTVIDDEAIAKKKANLLKNKKTHE-EFQFVK 881
Query: 183 VLNRVLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDF 242
+LN VLP IR+LGW P P F+ARFS L R YKYFF L++ M+ AG IGEHDF
Sbjct: 882 MLNGVLPPYIRVLGWSPIPFHFNARFSTLYRTYKYFFDPSNLDLNLMKEAGKSYIGEHDF 941
Query: 243 RNFCKMDATNVHNYRRHITMFEIFPTDV-RYGGNQLWVIKIRGSAFLWHQVRCMVAVLFL 301
NFCK+D +V ++ R I F+I P + + + ++V I G AFLWHQ+RCM+A+LFL
Sbjct: 942 SNFCKIDLESVKSFTRVILSFDIQPVESGDFSTSGMYVATICGYAFLWHQIRCMMAMLFL 1001
Query: 302 VGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSD 352
+G+ +I LLD +K KP Y M+SEVPLVL C +ED+ F+ D
Sbjct: 1002 IGQKKFPTTIIADLLDLSKGIVKPPYEMASEVPLVLFDCGYEDLNFIYDKD 1052
>M4B3Y2_HYAAE (tr|M4B3Y2) tRNA pseudouridine synthase OS=Hyaloperonospora
arabidopsidis (strain Emoy2) PE=3 SV=1
Length = 500
Score = 234 bits (597), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 131/329 (39%), Positives = 183/329 (55%), Gaps = 35/329 (10%)
Query: 37 IHEMEKKLHVSGEKNTGSIKGNRKSEEKIEKMTGYNTRFMSHHSKRYVALKVMYFGKRFY 96
+ + +K G+ G + +K +++ MT Y TR VA+K +Y G+++
Sbjct: 27 LRQQKKAASGGGDLEQGHLTSMKKKKQREFSMTNYTTR--------AVAIKFLYVGEKYA 78
Query: 97 GFASEAQMEPTVESEIFKALAKIRLLVGDKKESQYSRCGRTDKGVSSVGQVIALYLRSNL 156
GFA + M TVE + AL + +L + + ++ YSRCGRTD+GVS+ GQV+AL +RSNL
Sbjct: 79 GFARQDHMPETVERYLLDALVRSKL-IQNVDDAGYSRCGRTDRGVSAFGQVVALRVRSNL 137
Query: 157 KISGANTGSS-------GEIVEEQHEG-------EIDYVRVLNRVLPNDIRILGWCPAPV 202
+ ++ GE + + E+DY +NR LP DIR+
Sbjct: 138 PATAELLSATSIDNVRPGEKFQARLATGKVRTLTEVDYASQINRGLPADIRVYSVACCRQ 197
Query: 203 DFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMDATNVHNYRRHITM 262
F ARF C R Y+YFF + L+I M A L+G+HDFRNFC++D N H Y R +
Sbjct: 198 QFSARFDCKGRMYRYFFLRRDLDIEKMRRAAQFLVGKHDFRNFCRID-HNCHVYERSVGS 256
Query: 263 FEIFPTDVRYGGN-------QLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLESPNVIDML 315
FEI V + G Q++ K+ G AFLWHQVRCMV VLFL+G G E P +I L
Sbjct: 257 FEI----VEWPGQRADDSSQQMYCCKVFGRAFLWHQVRCMVEVLFLIGSGQEEPYIIPEL 312
Query: 316 LDTNKTPRKPQYIMSSEVPLVLQSCEFED 344
LD +TPRKPQY M+S++PLVL C F D
Sbjct: 313 LDIERTPRKPQYDMASDLPLVLHDCFFGD 341
>A7TJS8_VANPO (tr|A7TJS8) tRNA pseudouridine synthase OS=Vanderwaltozyma
polyspora (strain ATCC 22028 / DSM 70294)
GN=Kpol_1058p44 PE=3 SV=1
Length = 446
Score = 234 bits (597), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 127/278 (45%), Positives = 173/278 (62%), Gaps = 19/278 (6%)
Query: 76 MSHHSKRYVALKVMYFGKRFYGFA--SEAQMEPTVESEIFKALAKIRLLVG-DKKESQYS 132
S + R++ALK Y G + G A E PTVE I +A+ K RL+ + ++ ++S
Sbjct: 89 FSKYDTRFIALKFAYLGWNYNGLAIQKEPTPLPTVEGVILEAMNKCRLVPSMNPQDYKFS 148
Query: 133 RCGRTDKGVSSVGQVIALYLRSNLKIS-GANTGSSGEIVEEQHEGEIDYVRVLNRVLPND 191
RCGRTDKGVS++ QVI+L +RSNL AN+ + + EI YV +LN++LP+D
Sbjct: 149 RCGRTDKGVSAMSQVISLKVRSNLTPEEQANSDNDSK--------EIQYVDILNQLLPDD 200
Query: 192 IRILGWC-PAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMDA 250
IR+ C P DF ARFSC R YKY F KEGL++ ME A GE+DFRNFCK+D
Sbjct: 201 IRVSAVCLRPPKDFDARFSCKHRHYKYLFNKEGLDLEKMEQAAKYYEGENDFRNFCKLDG 260
Query: 251 T-NVHNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLESP 309
+ + NY+R I + + + + GSAFLWHQVRCM+A LFLVG+GLE
Sbjct: 261 SKQITNYKR-----TIISASIMHVSGDFYCFDLIGSAFLWHQVRCMMANLFLVGQGLEDH 315
Query: 310 NVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKF 347
+I +LD KTPRKP Y M+S+VPL+L C+FED+++
Sbjct: 316 TLIKDMLDIEKTPRKPIYDMASDVPLILYDCKFEDMEW 353
>E7R5R0_PICAD (tr|E7R5R0) tRNA pseudouridine synthase OS=Pichia angusta (strain
ATCC 26012 / NRRL Y-7560 / DL-1) GN=HPODL_1933 PE=3 SV=1
Length = 404
Score = 234 bits (596), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 127/274 (46%), Positives = 172/274 (62%), Gaps = 17/274 (6%)
Query: 76 MSHHSKRYVALKVMYFGKRFYGFASEAQME--PTVESEIFKALAKIRLLVG-DKKESQYS 132
S ++KR +ALK Y G ++G A + PTVE I KAL K +L+ D + +S
Sbjct: 52 FSKYNKRRIALKFSYLGWNYHGLAYQNDTSNIPTVELFILKALEKTKLIRNLDPTDCDFS 111
Query: 133 RCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHE-GEIDYVRVLNRVLPND 191
RCGRTDKGVS++ QVI+L +RSNL + E+ ++ E+DYV++LN+VLP D
Sbjct: 112 RCGRTDKGVSAMNQVISLVVRSNL--------TQDEMANPLNDVKELDYVKILNKVLPED 163
Query: 192 IRILGWCPAPVD-FHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMDA 250
IRI C P + F ARFSCLSR YKYFF + LNI M+ A +GE DFRNFCK+D
Sbjct: 164 IRIHSICLRPPEGFDARFSCLSRHYKYFFEQANLNIEKMQQAASYFVGEQDFRNFCKVDG 223
Query: 251 T-NVHNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLESP 309
+ + NY+R I I T G++ +V +RGSAFLWHQVR M+++LFLVG+ LE P
Sbjct: 224 SKQIVNYKRKIISSSIERTKF---GHKTYVFSLRGSAFLWHQVRSMMSILFLVGQELEEP 280
Query: 310 NVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFE 343
++ LLD P +P Y ++S +PLVL CEF+
Sbjct: 281 EIVRKLLDVKLFPGRPNYTIASPLPLVLYDCEFD 314
>Q6CN93_KLULA (tr|Q6CN93) tRNA pseudouridine synthase OS=Kluyveromyces lactis
(strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
NRRL Y-1140 / WM37) GN=KLLA0E14345g PE=3 SV=1
Length = 444
Score = 233 bits (595), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 130/300 (43%), Positives = 180/300 (60%), Gaps = 27/300 (9%)
Query: 54 SIKGNRKSEEKIEKMTGYNTRFMSHHSKRYVALKVMYFGKRFYGFA--SEAQMEPTVESE 111
++K RKS E + YNTRF VA K Y G + G A +A PTVE
Sbjct: 78 NVKKPRKSRE--FDFSKYNTRF--------VAFKFAYLGWNYNGLAIQKDATPLPTVEGT 127
Query: 112 IFKALAKIRLLVG-DKKESQYSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIV 170
I + + K +L+ +E ++SRCGRTD+GVS++ QVI+L +RSNL + ++
Sbjct: 128 ILETMNKCKLVPSMVPQEYKFSRCGRTDRGVSAMNQVISLRVRSNLT-------AEEQLD 180
Query: 171 EEQHEGEIDYVRVLNRVLPNDIRILGWC-PAPVDFHARFSCLSREYKYFFWKEGLNIPAM 229
+ EI YV +LN++LP DIR+ C P F ARFSC SR YKY F EGL++ M
Sbjct: 181 PSYDDKEIQYVNILNQILPEDIRVSAVCLRPPKGFDARFSCKSRHYKYLFSSEGLDLERM 240
Query: 230 ESAGIKLIGEHDFRNFCKMDAT-NVHNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFL 288
+ A GEHDFRNFCK+D + + NY+R I +++ + ++ + GSAFL
Sbjct: 241 QLAAKHYEGEHDFRNFCKLDGSKQITNYKRTIK-----SSNIMHVSEDMYCFDLVGSAFL 295
Query: 289 WHQVRCMVAVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFM 348
WHQVRCMVA LFLVG+GLE PN+I +LD K PRKP Y M+S++PL+L CEF ++++
Sbjct: 296 WHQVRCMVANLFLVGQGLEDPNLIKEMLDIEKMPRKPIYEMASDIPLILYECEFSPMEWI 355
>G8C233_TETPH (tr|G8C233) tRNA pseudouridine synthase OS=Tetrapisispora phaffii
(strain ATCC 24235 / CBS 4417 / NBRC 1672 / NRRL Y-8282
/ UCD 70-5) GN=TPHA0P00530 PE=3 SV=1
Length = 422
Score = 233 bits (595), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 141/385 (36%), Positives = 210/385 (54%), Gaps = 35/385 (9%)
Query: 56 KGNRKSEEKIEKMTGYN-----------TRFMSHHSKRYVALKVMYFGKRFYGFA--SEA 102
K N+K+ +KIE S ++ R++ALK Y G + G A E
Sbjct: 27 KHNKKTNDKIENTESITQNKNKKFNEKKKFDFSKYNTRFIALKFAYLGWNYNGLAIQKEP 86
Query: 103 QMEPTVESEIFKALAKIRLLVG-DKKESQYSRCGRTDKGVSSVGQVIALYLRSNLKISGA 161
PTVE I A+ K +L+ + + ++SRCGRTDKGVS++ QVI+L +RSNL
Sbjct: 87 TALPTVEGVIVDAMNKCKLIPSINPSDFKFSRCGRTDKGVSAMNQVISLNVRSNLT---- 142
Query: 162 NTGSSGEIVEEQHEGEIDYVRVLNRVLPNDIRILGWC-PAPVDFHARFSCLSREYKYFFW 220
++ E EI Y+ +LN++LP+DIRI C P F ARFSC R YKY F
Sbjct: 143 ---PEQQMNSEFDSKEIQYINILNQLLPDDIRISAVCLRPPTGFDARFSCQYRHYKYLFK 199
Query: 221 KEGLNIPAMESAGIKLIGEHDFRNFCKMDAT-NVHNYRRHITMFEIFPTDVRYGGNQLWV 279
K+GLNI AME+A GEHDFRNFCK+D + + N++R + +I + + +
Sbjct: 200 KDGLNISAMETAASYFKGEHDFRNFCKLDGSKQITNFKRTMMSSQILQVN-----EEFYC 254
Query: 280 IKIRGSAFLWHQVRCMVAVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQS 339
+ GSAFLWHQVRCM A+LFLVG+ LE P ++ L+D P+KP Y M+S++PL+L
Sbjct: 255 FDLIGSAFLWHQVRCMTAILFLVGQNLEVPEIVSQLVDVASNPQKPIYDMASDIPLILYD 314
Query: 340 CEFEDIKF-MCSSDAGEALRIHLVNECQT--FQLQ---AAVFHEALLNCVPLLHDQS-LP 392
C+F ++ + M + + +++ + E T +QL+ A +F + L + +++ +
Sbjct: 315 CKFPEMDWIMNNVNDYNSIKYSKIVEGLTLGYQLKSTVATIFQDILPSADQDFQNKTRIN 374
Query: 393 PSRGTTKKKASYVPLMSRPTEPSYE 417
G K +Y L R SYE
Sbjct: 375 LGDGKGKIVGTYEKLFKRKVMESYE 399
>B9WH16_CANDC (tr|B9WH16) tRNA pseudouridine synthase OS=Candida dubliniensis
(strain CD36 / ATCC MYA-646 / CBS 7987 / NCPF 3949 /
NRRL Y-17841) GN=CD36_50750 PE=3 SV=1
Length = 444
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 139/359 (38%), Positives = 198/359 (55%), Gaps = 35/359 (9%)
Query: 77 SHHSKRYVALKVMYFGKRFYGFASEAQMEP--TVESEIFKALAKIRLLVGDKKESQYSRC 134
S + R+VA K Y G + G A + + P TVE KALAK++L+ +E ++SRC
Sbjct: 82 SKQNMRFVAFKFAYLGWNYNGLALQGEPTPLPTVEEMFLKALAKVKLIKEPIEEVKFSRC 141
Query: 135 GRTDKGVSSVGQVIALYLRSNLKISG-ANTGSSGEIVEEQHEGEIDYVRVLNRVLPNDIR 193
GRTDKGVS++ QVI++ +RSNL + AN E + EIDY+ VLN LP+DI+
Sbjct: 142 GRTDKGVSAMNQVISIDVRSNLSLENQANP--------EFDDQEIDYISVLNANLPSDIK 193
Query: 194 ILGWC-PAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMDATN 252
+ C P +F ARFSCLS Y+Y F K+ LNI M G HDFRNFCK+D +
Sbjct: 194 VHSICLRPPPEFDARFSCLSCHYRYIFRKQDLNIDLMNQGANLYQGIHDFRNFCKLDGS- 252
Query: 253 VHNYRRHITMF--EIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLESPN 310
+ IT F EI+ + + + ++GSAFLWHQVRCMVA+LF +G+ LESP+
Sbjct: 253 -----KQITNFVREIYQAQILHLHQDYYCFDLKGSAFLWHQVRCMVAILFSIGQELESPS 307
Query: 311 VIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAGEALRIHLVNECQT--- 367
+I L+D K P KPQY M+ ++PLVL CEF +++ ++D R+H V + T
Sbjct: 308 IITDLMDMTKYPTKPQYEMAHDIPLVLYDCEFPPMEWKSTND---EYRLHRVIQSFTRMQ 364
Query: 368 FQLQAAVFHEALLNCVPLLHDQSLPPSR---------GTTKKKASYVPLMSRPTEPSYE 417
+ LQ ++ L +Q ++ G + Y+P+ R SYE
Sbjct: 365 YDLQLKTQMSQIMENTLLFKNQDSATTKILKTMNNGDGVGRSYNKYMPISERERTESYE 423
>Q17C60_AEDAE (tr|Q17C60) tRNA pseudouridine synthase OS=Aedes aegypti
GN=AAEL004663 PE=3 SV=1
Length = 467
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 134/333 (40%), Positives = 192/333 (57%), Gaps = 33/333 (9%)
Query: 14 LQARVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRKSEEKIEKMTGYNT 73
L R+ +LE++N +L + + V+G KN K N K + K +
Sbjct: 27 LVDRIVQLESQNFQLKNIIQ-----------KVTGIKNDEP-KSNDKKQRKFD------- 67
Query: 74 RFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLVGDKKESQYSR 133
F S H KR++ L+ Y G + G+AS+ T+E +F AL ++ L+ +++ S Y R
Sbjct: 68 -FASCH-KRHILLRFYYLGWDYQGYASQEDSARTIEHLLFNALTRV-CLIENRETSNYHR 124
Query: 134 CGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDYVRVLNRVLPNDIR 193
CGRTDKGVS+ QV++L +RS ++ E EI+Y ++LNRVLP DIR
Sbjct: 125 CGRTDKGVSAFHQVVSLDVRSKF-------APENQLEPESIANEINYCQLLNRVLPQDIR 177
Query: 194 ILGWCP-APVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMDATN 252
+ W P ++ ARF C SR Y+YFF + LNI AM+ A L+G HDFRN CKMD N
Sbjct: 178 CVAWMPMVNPNYSARFDCRSRTYRYFFPRGSLNIDAMKEACTFLVGAHDFRNLCKMDVGN 237
Query: 253 -VHNYRRHITMFEI--FPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLESP 309
V + R I+ I +D + + +++RG AFLWHQVRC++AVLFLVG+G E P
Sbjct: 238 GVVTFTRRISYVSIEDSQSDAKESPYDMLYLELRGKAFLWHQVRCIMAVLFLVGEGKEEP 297
Query: 310 NVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEF 342
+V+ LLD NK P KPQY ++S++PL L CE+
Sbjct: 298 SVVKELLDVNKNPCKPQYSLASDLPLNLYECEY 330
>I1S253_GIBZE (tr|I1S253) Uncharacterized protein OS=Gibberella zeae (strain PH-1
/ ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=FG10837.1
PE=3 SV=1
Length = 538
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 149/398 (37%), Positives = 206/398 (51%), Gaps = 93/398 (23%)
Query: 14 LQARVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRKSEEKIEKMTGYNT 73
L +VKELEAE Q+ D +++ +K ++ K+++ N
Sbjct: 15 LIQKVKELEAELGNRPPQVKDEEVYDPKKS-----------------TKPKVKRKMDPN- 56
Query: 74 RFMSHHSKRYVALKVMYFGKRFYGFASEAQME-PTVESEIFKALAKIRLLVGDKKE---- 128
++ RY+ALK+ Y GK + GF +A P++E E++ AL K L+ + +
Sbjct: 57 ----KYTTRYIALKLAYLGKNYGGFEFQAMANAPSIEEELWNALTKACLIFPEDERIVDF 112
Query: 129 --SQYSRCGRTDKGVSSVGQVIALYLRS-------NLKISGANTG-----SSGEIVEEQH 174
+YS+CGRTDKGVS+ GQVI L +RS ++S A SGE EE+
Sbjct: 113 DCCEYSKCGRTDKGVSAFGQVIGLRVRSARPVPKKRRRMSEAGEAMVVDEQSGENAEEEV 172
Query: 175 EG----------EIDYVRVLNRVLPNDIRILGWCPAPV-DFHARFSCLSREYKYFFWKEG 223
E E+ Y R+LNRVLP DIRIL WCP+P DF ARFSC R+Y+YFF +
Sbjct: 173 EDNTPPFDPIKDELQYPRLLNRVLPPDIRILAWCPSPPPDFSARFSCRERQYRYFFTQPA 232
Query: 224 --------------LNIPAMESAGIKLIGEHDFRNFCKMD-ATNVHNYRRHITMFEI--- 265
L+I AM A + G+HDFRNFCK+D + N+ R I +I
Sbjct: 233 FTPEPSAGGARNGWLDIEAMRDAAKRYEGDHDFRNFCKIDPGKQITNFERTIYEADIEEV 292
Query: 266 --------------------FPTD-VRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGK 304
PTD +Y +++ K+RGSAFLWHQ+R MVAVLFL G+
Sbjct: 293 QDVSSALPYLSSPQFAPAEGLPTDDAKYP--KVYCFKVRGSAFLWHQIRHMVAVLFLAGQ 350
Query: 305 GLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEF 342
LE+P+V+ +LD K P KP Y+M+ EVPLVL C F
Sbjct: 351 RLETPDVVTTMLDVAKNPCKPNYVMADEVPLVLWDCIF 388
>H9KIB3_APIME (tr|H9KIB3) tRNA pseudouridine synthase OS=Apis mellifera
GN=LOC410475 PE=3 SV=1
Length = 417
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 134/340 (39%), Positives = 190/340 (55%), Gaps = 45/340 (13%)
Query: 12 ATLQARVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGN--RKSEEKIEKMT 69
+ L R+ LE EN +L + ++ EKN S + RKS++ +
Sbjct: 24 SELIERIVNLEKENKQLKT---------------ITNEKNEKSKNKDIIRKSQKPFD--- 65
Query: 70 GYNTRFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLVGDKKES 129
S +KR++ LK Y G + GF + ++ T+E +F+AL K + ++ S
Sbjct: 66 ------FSKCNKRHILLKFYYLGWDYNGFVVQESIDNTIEEHLFEALIK-SCCIESRETS 118
Query: 130 QYSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQH--EGEIDYVRVLNRV 187
Y RCGRTDKGVSS QVI+L +RS L E+Q+ E E+ Y ++LNR+
Sbjct: 119 NYHRCGRTDKGVSSFSQVISLDIRSKLN------------PEDQYKLEDELPYCKILNRL 166
Query: 188 LPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCK 247
LP++IR + WCP P DF ARF+C R YKYFF + LNI AM A +IGEHDFRN CK
Sbjct: 167 LPSNIRCIAWCPVPNDFSARFNCKFRTYKYFFPRGNLNIDAMNKAVKYIIGEHDFRNICK 226
Query: 248 MDATN-VHNYRRHITMFEI--FPTDVR-YGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVG 303
MD N V NY R + E+ + D R G ++ + I AFLWHQ+RC++ VLFL+G
Sbjct: 227 MDVANGVINYIRKVINAEVRMYRQDFRNISGYDMYQLIITSQAFLWHQIRCLMGVLFLIG 286
Query: 304 KGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFE 343
+G E ++ LLD P+KPQY ++ E+PL L CE++
Sbjct: 287 EGKEEAEIMLELLDIENCPKKPQYNLAHEIPLNLWYCEYD 326
>A4S2K7_OSTLU (tr|A4S2K7) tRNA pseudouridine synthase (Fragment) OS=Ostreococcus
lucimarinus (strain CCE9901) GN=OSTLU_3550 PE=3 SV=1
Length = 257
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 127/270 (47%), Positives = 167/270 (61%), Gaps = 26/270 (9%)
Query: 76 MSHHSKRYVALKVMYFGKRFYGFASEAQMEP----TVESEIFKALAKIRLLVGDK---KE 128
S H+ R +AL V Y G ++GFAS+ TVE +F ALAK +L+ + K
Sbjct: 5 FSKHAARKIALHVCYLGWDYHGFASQGAANAAAPRTVEQALFDALAKTKLVESARDVFKV 64
Query: 129 SQYSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDYVRVLNRVL 188
+ Y+RCGRTD+GVS +GQ++ L RSN G+ G V+E E+DYV +LNR L
Sbjct: 65 ADYARCGRTDRGVSGLGQIVTLRARSN--------GAEG--VDE----ELDYVALLNRAL 110
Query: 189 PNDIRILGWCPAPVDFHARFSCLSREYKYFFWK-EGLNIPAMESAGIKLIGEHDFRNFCK 247
PND+R LGW P + +ARF C R+YKYFF K GL++ AM A G HDFRNFC+
Sbjct: 111 PNDVRALGWAPVDDELNARFDCEWRQYKYFFEKTNGLDLGAMREAARAFEGVHDFRNFCR 170
Query: 248 MDATNVHNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLE 307
MDA NV ++ R++ I + +L I +RG+AFLWHQVRCM +VLF+VG G E
Sbjct: 171 MDAENVKSFTRNVLECTIEESH----DGKLMYINVRGTAFLWHQVRCMASVLFMVGLGHE 226
Query: 308 SPNVIDMLLDTNKTPRKPQYIMSSEVPLVL 337
SP V+ LLD +TPRKPQY M+ E L+L
Sbjct: 227 SPTVVTELLDLERTPRKPQYPMAPEHALLL 256
>E9E127_METAQ (tr|E9E127) Putative pseudouridine synthase 3 OS=Metarhizium
acridum (strain CQMa 102) GN=MAC_03575 PE=3 SV=1
Length = 564
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 149/413 (36%), Positives = 211/413 (51%), Gaps = 94/413 (22%)
Query: 17 RVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRKSE---EKIEKMTGYNT 73
R+KELE+E K E K + G++ G++ + +
Sbjct: 18 RLKELESELKKR---------PEASKAVSAPGDEPQGAMAATVSDDMPGPAKKTKAPKAK 68
Query: 74 RFMSH--HSKRYVALKVMYFGKRFYGFASEAQ-MEPTVESEIFKALAKIRLLVGDKKE-- 128
R M H +S R++ALK+ Y GK + GF +A +P++E E++ AL + L+ + +
Sbjct: 69 RRMDHSRYSTRFIALKLAYLGKNYGGFEFQAMGNQPSIEEELWNALTRACLIFPEDERIV 128
Query: 129 ----SQYSRCGRTDKGVSSVGQVIALYLRSNL---------------KISGANTGSSG-- 167
+YS+CGRTD+GVS+ GQVI L +RSN I+ A G G
Sbjct: 129 QFNCCEYSKCGRTDRGVSAFGQVIGLKVRSNRPLPKNGSKTDVAAAEDIAMAEAGPQGGK 188
Query: 168 ------------EIVEEQHEGEIDYVRVLNRVLPNDIRILGWCPAPV-DFHARFSCLSRE 214
+ ++ H+ E+ Y R+LNR+LP+DIRIL WCP+P DF ARFSC R+
Sbjct: 189 QAEEDVEVQEEEKPFDDIHD-ELCYPRILNRLLPDDIRILAWCPSPPPDFSARFSCRERQ 247
Query: 215 YKYFFWKEG---------------------LNIPAMESAGIKLIGEHDFRNFCKMD-ATN 252
Y+YFF + L+I AM A + GEHDFRNFCK+D A
Sbjct: 248 YRYFFTQPAFAPDPASLDLSGASKPLKAGWLDIDAMRDAAKRYEGEHDFRNFCKIDPAKQ 307
Query: 253 VHNYRRHITMFEIF------------------PTDVRYGGN--QLWVIKIRGSAFLWHQV 292
+ N+RR I +I P ++ G +++ +RGSAFLWHQ+
Sbjct: 308 ITNFRRRIFESDIVEVQDASSVMPYLQTSGFSPPGLQGSGPYPKVYYFHVRGSAFLWHQI 367
Query: 293 RCMVAVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDI 345
R MVA+LFLVG+GLESP V+ LLDT K P +P Y+M+ EVPLVL C F D+
Sbjct: 368 RHMVAILFLVGQGLESPTVVSELLDTAKNPGRPSYVMADEVPLVLWDCIFPDL 420
>N1S346_FUSOX (tr|N1S346) tRNA pseudouridine synthase 3 OS=Fusarium oxysporum f.
sp. cubense race 4 GN=FOC4_g10004599 PE=4 SV=1
Length = 546
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 154/396 (38%), Positives = 202/396 (51%), Gaps = 81/396 (20%)
Query: 14 LQARVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRKSEEKIEKMTGYNT 73
L +VKELEAE L + E K + E G E K K G
Sbjct: 15 LIQKVKELEAE-------LRNRPAPGPEPKPEIQPENEEGD-------EAKRTKPKGKRK 60
Query: 74 RFMSHHSKRYVALKVMYFGKRFYGFASEAQME-PTVESEIFKALAKIRLLVGDKKE---- 128
S +S RY+ALK+ Y GK + GF +A P++E E++ AL K L+ + +
Sbjct: 61 MDPSKYSTRYIALKLAYLGKNYGGFEFQAMANAPSIEEELWNALTKACLIFPEDERIVDF 120
Query: 129 --SQYSRCGRTDKGVSSVGQVIALYLRSN--LKISGANTGSSGE--IVEEQHEG------ 176
+YS+CGRTDKGVS+ GQVI L +RSN L +GE +V+EQ G
Sbjct: 121 DCCEYSKCGRTDKGVSAFGQVIGLRVRSNRPLPKKRRRLSEAGEAMVVDEQEGGNAEEEP 180
Query: 177 ------------EIDYVRVLNRVLPNDIRILGWCPAPV-DFHARFSCLSREYKYFFWKEG 223
E+ Y R+LNRVLP DIRIL WCP+P DF ARFSC R+Y+YFF +
Sbjct: 181 VEETPSFDDIKDELQYPRLLNRVLPPDIRILAWCPSPPPDFSARFSCRERQYRYFFTQPA 240
Query: 224 --------------LNIPAMESAGIKLIGEHDFRNFCKMD-ATNVHNYRRHITMFEI--- 265
L+I AM A + GEHDFRNFCK+D + N+ R I +I
Sbjct: 241 FTPEPSAGGARNGWLDIEAMREAAKRYEGEHDFRNFCKIDPGKQITNFVRTIYEADIEEV 300
Query: 266 --------FPTDVRY---GG--------NQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGL 306
+ + +Y GG +++ +RGSAFLWHQ+R MVAVLFL G+ L
Sbjct: 301 KDVSSALPYLSGSQYVPAGGLPDDGTVYPKVYSFNVRGSAFLWHQIRHMVAVLFLAGQKL 360
Query: 307 ESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEF 342
E+P+V+ LLD P KP Y+M+ EVPLVL C F
Sbjct: 361 ETPDVVTTLLDVKANPCKPNYVMADEVPLVLWDCIF 396
>J9JC91_9SPIT (tr|J9JC91) tRNA pseudouridine synthase OS=Oxytricha trifallax
GN=OXYTRI_22425 PE=3 SV=1
Length = 482
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 123/299 (41%), Positives = 172/299 (57%), Gaps = 34/299 (11%)
Query: 60 KSEEKIEKMTGYNTRFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKI 119
KS KI ++ S H + +A K Y GK + G A + + T+E IF AL +
Sbjct: 84 KSHHKIFNQRSFD---FSKHKQVKIAFKFSYLGKDYKGLAIQTNTDETIEGRIFAALKRA 140
Query: 120 RLLVGDKK--ESQYSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGE 177
L+ D +SQY+RCGRTDKGVS++G V++LY+R K+ N
Sbjct: 141 CLVQPDIPIFKSQYTRCGRTDKGVSALGNVLSLYVR---KLKDDN--------------- 182
Query: 178 IDYVRVLNRVLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLI 237
Y +VLN LP DIR++ + P F +RFSC+ REYKYFF ++ +NI M+ A K +
Sbjct: 183 --YCQVLNHCLPADIRMISFSEVPAHFDSRFSCIYREYKYFFVQQNMNIEKMKQAARKYL 240
Query: 238 GEHDFRNFCKMDAT-------NVHNYRRHITMFEIFPTDVRYGGNQL--WVIKIRGSAFL 288
G HDFRNFCK D + + N+ R I F+I + +L W + IRGSAFL
Sbjct: 241 GIHDFRNFCKKDESVKLEDDEDDQNFMRRIYRFDIVQQHINVQNEKLSIWHVVIRGSAFL 300
Query: 289 WHQVRCMVAVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKF 347
WHQVRCM+AVLF++G+G E +VID+L D K P +P Y ++SE L+L C F+DI++
Sbjct: 301 WHQVRCMMAVLFMIGRGEEDESVIDLLYDIEKLPERPNYNIASEFGLILNECGFDDIEW 359
>C5DXE3_ZYGRC (tr|C5DXE3) tRNA pseudouridine synthase OS=Zygosaccharomyces rouxii
(strain ATCC 2623 / CBS 732 / NBRC 1130 / NCYC 568 /
NRRL Y-229) GN=ZYRO0F04334g PE=3 SV=1
Length = 431
Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 135/365 (36%), Positives = 208/365 (56%), Gaps = 19/365 (5%)
Query: 40 MEKKLHVSGEKNTGSIKGNRKSEEKIEKMTGYNTRFMSHHSKRYVALKVMYFGKRFYGFA 99
+EK + + ++ + K ++K+ ++ K S ++ R++ALK Y G + G A
Sbjct: 38 IEKIVELENHQDVQNSKKHKKASPELPKTKRRREFDFSKYNTRFIALKFSYLGWNYNGLA 97
Query: 100 SEAQMEP--TVESEIFKALAKIRLLVGDK-KESQYSRCGRTDKGVSSVGQVIALYLRSNL 156
+ + P TVE I AL K RL+ ++ ++SRCGRTDKGVS++ QVI+L +RSNL
Sbjct: 98 VQKDVTPLPTVEGVIIDALMKCRLVASSNVQDFRFSRCGRTDKGVSAMNQVISLEVRSNL 157
Query: 157 KISGANTGSSGEIVEEQHEGEIDYVRVLNRVLPNDIRILGWCPAPVD-FHARFSCLSREY 215
S+ E+ Y ++LN +LP DI+I C P + F AR+SC R Y
Sbjct: 158 SDEEQKDPSNDT-------RELQYAQILNHLLPEDIKISAMCLRPPEGFDARYSCEYRHY 210
Query: 216 KYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMDAT-NVHNYRRHITMFEIFPTDVRYGG 274
KY F +GL + M+ A GEHDFRNFCK+D + + NY R+I +++++
Sbjct: 211 KYLFSGKGLMLDRMQKAAALYHGEHDFRNFCKLDGSKQITNYTRNI-----LGSEIQHIS 265
Query: 275 NQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVP 334
+ ++ + GSAFLWHQVRCM+A+LFLVG+GLE P+VI LLD +KTP+KP Y M+S++P
Sbjct: 266 DNMYCFDLVGSAFLWHQVRCMMAILFLVGQGLEEPSVITNLLDVDKTPQKPIYEMASDLP 325
Query: 335 LVLQSCEFEDIKFMCSSDAG-EALRIHLVNECQTFQLQ-AAVFHEALLNCVPLLHDQSLP 392
L+L C+F +++++ + A +A++ V E Q A C+ L D +
Sbjct: 326 LILYDCKFPEMEWIQPTSADYKAIKYSKVIESLNLHYQFKATVANMFAECLALQPDSNAD 385
Query: 393 PSRGT 397
S T
Sbjct: 386 FSNKT 390
>C0PNV6_MAIZE (tr|C0PNV6) tRNA pseudouridine synthase OS=Zea mays PE=2 SV=1
Length = 199
Score = 230 bits (587), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 113/197 (57%), Positives = 141/197 (71%), Gaps = 5/197 (2%)
Query: 229 MESAGIKLIGEHDFRNFCKMDATNVHNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFL 288
M+ A K IGEHDFRNFCKMDA NV NYRRHIT F I D R ++L + I+GSAFL
Sbjct: 1 MQKAASKFIGEHDFRNFCKMDAANVSNYRRHITEFTISACDRRSNNDELCSMTIKGSAFL 60
Query: 289 WHQVRCMVAVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFM 348
WHQVRCMVAVLFL+G+GLESP+V+D LLD KT RKPQY M+ E+PL+LQSC F+ FM
Sbjct: 61 WHQVRCMVAVLFLIGQGLESPSVVDSLLDIMKTSRKPQYKMAPELPLILQSCLFDKANFM 120
Query: 349 CSSDAGEALRIHLVNECQTFQLQAAVFHEALLNCVPLLHDQSLPPSRGTTKKKASYVPLM 408
CS+DA +L HL +E + LQA +FH A +C+P P S T +KK +++PL+
Sbjct: 121 CSADASRSLTEHLNDEYRHHMLQAEIFHIA-SSCLPFPE----PNSSETPQKKRNHIPLL 175
Query: 409 SRPTEPSYEERRAKLNS 425
SR TEPSYEER +K+ +
Sbjct: 176 SRETEPSYEERISKVKA 192
>G8YUT8_PICSO (tr|G8YUT8) tRNA pseudouridine synthase OS=Pichia sorbitophila
(strain ATCC MYA-4447 / BCRC 22081 / CBS 7064 / NBRC
10061 / NRRL Y-12695) GN=Piso0_000208 PE=3 SV=1
Length = 432
Score = 230 bits (586), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 121/276 (43%), Positives = 176/276 (63%), Gaps = 19/276 (6%)
Query: 79 HSKRYVALKVMYFGKRFYG--FASEAQMEPTVESEIFKALAKIRLLVG-DKKESQYSRCG 135
HSKR++A+K Y G + G F E PTVE EI KAL K +L+ D SRCG
Sbjct: 72 HSKRFIAIKFAYLGWNYSGLSFQYEPTPLPTVEEEILKALEKAKLIPAVDPLSCDLSRCG 131
Query: 136 RTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEG-EIDYVRVLNRVLPNDIRI 194
RTD+GVS++ QV++L +RSNL ++ S ++G E+ Y+ +LN +LP DIR+
Sbjct: 132 RTDRGVSAMNQVMSLTVRSNLAPEEQDSTS--------NDGRELPYLAILNSLLPPDIRV 183
Query: 195 LGWC-PAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMDAT-N 252
C P DF+ARFSCL R Y+YFF L++ M A K G HDFRNFCK+D +
Sbjct: 184 TAVCLHPPPDFNARFSCLYRHYRYFFRPHDLDVELMSKAAKKYEGVHDFRNFCKIDGSKQ 243
Query: 253 VHNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLESPNVI 312
+ NY+R I ++ P + ++L++++++G+AFLWHQVRCM AVLFLVG+ ES +VI
Sbjct: 244 ITNYKREILSADVLPYN-----DELYMLELKGTAFLWHQVRCMAAVLFLVGQKHESIDVI 298
Query: 313 DMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFM 348
D LL+ +K P KP + M++++PLVL C + ++++
Sbjct: 299 DELLNVDKYPSKPNFEMANDIPLVLFDCAYPSMEWI 334
>N4UNN8_FUSOX (tr|N4UNN8) tRNA pseudouridine synthase 3 OS=Fusarium oxysporum f.
sp. cubense race 1 GN=FOC1_g10009668 PE=4 SV=1
Length = 546
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 153/396 (38%), Positives = 202/396 (51%), Gaps = 81/396 (20%)
Query: 14 LQARVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRKSEEKIEKMTGYNT 73
L +VKELEAE L + E K + E G E K K G
Sbjct: 15 LIQKVKELEAE-------LRNRPAPGPEPKPEIQPENEEGD-------EAKRTKPKGKRK 60
Query: 74 RFMSHHSKRYVALKVMYFGKRFYGFASEAQME-PTVESEIFKALAKIRLLVGDKKE---- 128
S +S RY+ALK+ Y GK + GF +A P++E E++ AL K L+ + +
Sbjct: 61 MDPSKYSTRYIALKLAYLGKNYGGFEFQAMANAPSIEEELWNALTKACLIFPEDERIVDF 120
Query: 129 --SQYSRCGRTDKGVSSVGQVIALYLRSN--LKISGANTGSSGE--IVEEQH-------- 174
+YS+CGRTDKGVS+ GQVI L +RSN L +GE +V+EQ
Sbjct: 121 DCCEYSKCGRTDKGVSAFGQVIGLRVRSNRPLPKKRRRLSEAGEAMVVDEQAGENAEEEP 180
Query: 175 ----------EGEIDYVRVLNRVLPNDIRILGWCPAPV-DFHARFSCLSREYKYFFWKEG 223
+ E+ Y R+LNRVLP DIRIL WCP+P DF ARFSC R+Y+YFF +
Sbjct: 181 VEETPSFDDIKDELQYPRLLNRVLPPDIRILAWCPSPPPDFSARFSCRERQYRYFFTQPA 240
Query: 224 --------------LNIPAMESAGIKLIGEHDFRNFCKMD-ATNVHNYRRHITMFEI--- 265
L+I AM A + GEHDFRNFCK+D + N+ R I +I
Sbjct: 241 FTPEPSAGGARNGWLDIEAMREAAKRYEGEHDFRNFCKIDPGKQITNFVRTIYEADIEEV 300
Query: 266 --------FPTDVRY---GG--------NQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGL 306
+ + +Y GG +++ +RGSAFLWHQ+R MVAVLFL G+ L
Sbjct: 301 KDVSSALPYLSGSQYVPAGGLPNDGTVYPKVYSFNVRGSAFLWHQIRHMVAVLFLAGQKL 360
Query: 307 ESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEF 342
E+P+V+ LLD P KP Y+M+ EVPLVL C F
Sbjct: 361 ETPDVVTTLLDVKANPCKPNYVMADEVPLVLWDCIF 396
>C4Y7T4_CLAL4 (tr|C4Y7T4) tRNA pseudouridine synthase OS=Clavispora lusitaniae
(strain ATCC 42720) GN=CLUG_04262 PE=3 SV=1
Length = 447
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 131/325 (40%), Positives = 190/325 (58%), Gaps = 23/325 (7%)
Query: 76 MSHHSKRYVALKVMYFGKRFYG--FASEAQMEPTVESEIFKALAKIRLLV-GDKKESQYS 132
S H+ R+VA + Y G + G F +E PTVE EI +A+ K +L+ D +S
Sbjct: 78 FSKHNTRFVAFRFAYMGWNYNGLNFQNEPTPLPTVEEEILQAMTKAKLVPEADPASCNFS 137
Query: 133 RCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDYVRVLNRVLPNDI 192
RCGRTDKGVS++ QVI+L +RS L +E+ E+ Y+ +LN +LP DI
Sbjct: 138 RCGRTDKGVSALNQVISLDVRSAL-------SKEEHADKEKDVKELPYLTILNALLPPDI 190
Query: 193 RILGWC-PAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMDAT 251
RI C P +F+ARFSC R YKY F K L++ M+ A +K G HDFRNFCK+D +
Sbjct: 191 RITAVCLRPPPNFNARFSCKYRHYKYLFKKTDLDVDLMQEAALKYEGPHDFRNFCKIDGS 250
Query: 252 -NVHNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLESPN 310
+ N+ R E++ + + + +V ++G+AFLWHQVRCMVAVLF VG+ LESP+
Sbjct: 251 KQITNHCR-----EVYSARIEHFKDDFYVFDLKGTAFLWHQVRCMVAVLFSVGQKLESPS 305
Query: 311 VIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSS-DAGEALRIHLVNECQTFQ 369
++D LL+ +K P KP Y M+++VPLVL C F +++++ S+ D R L E F
Sbjct: 306 IVDDLLNVSKFPSKPIYEMANDVPLVLYDCVFPEMEWLTSANDFNGTQRPKLAKEHGRFN 365
Query: 370 LQAAVFHEALL--NCVPLLHDQSLP 392
++F E L N ++H +P
Sbjct: 366 ---SLFLEYQLKANIASMVHSVFMP 387
>E7Q3F1_YEASB (tr|E7Q3F1) tRNA pseudouridine synthase OS=Saccharomyces cerevisiae
(strain FostersB) GN=FOSTERSB_1484 PE=3 SV=1
Length = 431
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 146/378 (38%), Positives = 209/378 (55%), Gaps = 58/378 (15%)
Query: 17 RVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRKSEEKIEKMTGYNTRFM 76
R+ ELE N + HI E KK +S E+ T S +K+ +K +
Sbjct: 30 RITELENANKPHSEKF--QHI-EDNKKRKISQEEVTRS--KAKKAPKKFD---------F 75
Query: 77 SHHSKRYVALKVMYFGKRFYGFASEAQMEP--TVESEIFKALAKIRLLVGDK-KESQYSR 133
S H+ R++AL+ Y G + G A + + P TVE I +A+ K +L+ ++ ++SR
Sbjct: 76 SKHNTRFIALRFAYLGWNYNGLAVQKEFTPLPTVEGTILEAMNKCKLVPSMVLQDYKFSR 135
Query: 134 CGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEG-----EIDYVRVLNRVL 188
CGRTDKGVS++ QVI+L +RSNL EEQ + EI YV VLN++L
Sbjct: 136 CGRTDKGVSAMNQVISLEVRSNL------------TDEEQRDPTNDSREIPYVHVLNQLL 183
Query: 189 PNDIRILGWC-PAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCK 247
P+DIRI C P +F ARFSC+ R YKY F + LNI M A +GE DFRNFCK
Sbjct: 184 PDDIRISAVCLRPPPNFDARFSCVHRHYKYIFNGKNLNIEKMSKAASYFVGERDFRNFCK 243
Query: 248 MDAT-NVHNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGL 306
+D + + N++R I +I P + + GSAFLWHQVRCM+A+LFLVG+ L
Sbjct: 244 LDGSKQITNFKRTIISSKILPL-----SETFYCFDLIGSAFLWHQVRCMMAILFLVGQSL 298
Query: 307 ESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEF----------EDIKFMCSSDAGEA 356
E P ++ L D KTP++P Y M++++PL+L C+F +D K + + A EA
Sbjct: 299 EVPEIVLRLTDIEKTPQRPVYEMANDIPLLLYDCKFPEMDWQEPTVDDYKAIKFTTATEA 358
Query: 357 LRIHLVNECQTFQLQAAV 374
L +H ++L+AAV
Sbjct: 359 LTLH-------YELKAAV 369
>K3VCC3_FUSPC (tr|K3VCC3) Uncharacterized protein OS=Fusarium pseudograminearum
(strain CS3096) GN=FPSE_09868 PE=3 SV=1
Length = 538
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 147/398 (36%), Positives = 206/398 (51%), Gaps = 93/398 (23%)
Query: 14 LQARVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRKSEEKIEKMTGYNT 73
L +VKELEAE Q+ + +++ +K ++ K+++ N
Sbjct: 15 LIQKVKELEAELGNRPPQVKNEEVYDPKKS-----------------TKPKVKRKMDPN- 56
Query: 74 RFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPT-VESEIFKALAKIRLLVGDKKE---- 128
++ RY+ALK+ Y GK + GF +A + +E E++ AL K L+ + +
Sbjct: 57 ----KYTTRYIALKLAYLGKNYGGFEFQAMANASSIEEELWNALTKACLIFPEDERIVDF 112
Query: 129 --SQYSRCGRTDKGVSSVGQVIALYLRS-------NLKISGANTG-----SSGEIVEEQH 174
+YS+CGRTDKGVS+ GQVI L +RS ++S A SG+ EE+
Sbjct: 113 DCCEYSKCGRTDKGVSAFGQVIGLRVRSARPVPKKRRRLSEAGEAMVVDEQSGDNAEEEV 172
Query: 175 EG----------EIDYVRVLNRVLPNDIRILGWCPAPV-DFHARFSCLSREYKYFFWKEG 223
E E+ Y R+LNRVLP DIRIL WCP+P DF ARFSC R+Y+YFF +
Sbjct: 173 EDNTPPFDPIKDELQYPRLLNRVLPPDIRILAWCPSPPPDFSARFSCRERQYRYFFTQPA 232
Query: 224 --------------LNIPAMESAGIKLIGEHDFRNFCKMD-ATNVHNYRRHITMFEI--- 265
L+I AM A + G+HDFRNFCK+D + N+ R I +I
Sbjct: 233 FTPEPSAGGSRNGWLDIEAMRDAAKRYEGDHDFRNFCKIDPGKQITNFERTIYEADIEEV 292
Query: 266 --------------------FPTD-VRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGK 304
PTD +Y +++ K+RGSAFLWHQ+R MVAVLFL G+
Sbjct: 293 RDVSSALPYLSSPQFAPAEGLPTDDAKY--PKVYCFKVRGSAFLWHQIRHMVAVLFLAGQ 350
Query: 305 GLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEF 342
LE+P+V+ M+LD K P KP Y+M+ EVPLVL C F
Sbjct: 351 RLETPDVVTMMLDVAKNPCKPNYVMADEVPLVLWDCIF 388
>E7NH83_YEASO (tr|E7NH83) tRNA pseudouridine synthase OS=Saccharomyces cerevisiae
(strain FostersO) GN=FOSTERSO_1464 PE=3 SV=1
Length = 442
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 147/381 (38%), Positives = 210/381 (55%), Gaps = 58/381 (15%)
Query: 14 LQARVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRKSEEKIEKMTGYNT 73
L R+ ELE N + HI E KK +S E+ T S +K+ +K +
Sbjct: 38 LIRRITELENANKPHSEKF--QHI-EDNKKRKISQEEVTRS--KAKKAPKKFD------- 85
Query: 74 RFMSHHSKRYVALKVMYFGKRFYGFASEAQMEP--TVESEIFKALAKIRLLVGDK-KESQ 130
S H+ R++AL+ Y G + G A + + P TVE I +A+ K +L+ ++ +
Sbjct: 86 --FSKHNTRFIALRFAYLGWNYNGLAVQKEFTPLPTVEGTILEAMNKCKLVPSMVLQDYK 143
Query: 131 YSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEG-----EIDYVRVLN 185
+SRCGRTDKGVS++ QVI+L +RSNL EEQ + EI YV VLN
Sbjct: 144 FSRCGRTDKGVSAMNQVISLEVRSNL------------TDEEQRDPTNDSREIPYVHVLN 191
Query: 186 RVLPNDIRILGWC-PAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRN 244
++LP+DIRI C P +F ARFSC+ R YKY F + LNI M A +GE DFRN
Sbjct: 192 QLLPDDIRISAVCLRPPPNFDARFSCVHRHYKYIFNGKNLNIEKMSKAASYFVGERDFRN 251
Query: 245 FCKMDAT-NVHNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVG 303
FCK+D + + N++R I +I P + + GSAFLWHQVRCM+A+LFLVG
Sbjct: 252 FCKLDGSKQITNFKRTIISSKILPL-----SETFYCFDLIGSAFLWHQVRCMMAILFLVG 306
Query: 304 KGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEF----------EDIKFMCSSDA 353
+ LE P ++ L D KTP++P Y M++++PL+L C+F +D K + + A
Sbjct: 307 QSLEVPEIVLRLTDIEKTPQRPVYEMANDIPLLLYDCKFPEMDWQEPTVDDYKAIKFTTA 366
Query: 354 GEALRIHLVNECQTFQLQAAV 374
EAL +H ++L+AAV
Sbjct: 367 TEALTLH-------YELKAAV 380
>C7GYA6_YEAS2 (tr|C7GYA6) tRNA pseudouridine synthase OS=Saccharomyces cerevisiae
(strain JAY291) GN=DEG1 PE=3 SV=1
Length = 442
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 147/381 (38%), Positives = 210/381 (55%), Gaps = 58/381 (15%)
Query: 14 LQARVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRKSEEKIEKMTGYNT 73
L R+ ELE N + HI E KK +S E+ T S +K+ +K +
Sbjct: 38 LIRRITELENANKPHSEKF--QHI-EDNKKRKISQEEVTRS--KAKKAPKKFD------- 85
Query: 74 RFMSHHSKRYVALKVMYFGKRFYGFASEAQMEP--TVESEIFKALAKIRLLVGDK-KESQ 130
S H+ R++AL+ Y G + G A + + P TVE I +A+ K +L+ ++ +
Sbjct: 86 --FSKHNTRFIALRFAYLGWNYNGLAVQKEFTPLPTVEGTILEAMNKCKLVPSMVLQDYK 143
Query: 131 YSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEG-----EIDYVRVLN 185
+SRCGRTDKGVS++ QVI+L +RSNL EEQ + EI YV VLN
Sbjct: 144 FSRCGRTDKGVSAMNQVISLEVRSNL------------TDEEQRDPTNDSREIPYVHVLN 191
Query: 186 RVLPNDIRILGWC-PAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRN 244
++LP+DIRI C P +F ARFSC+ R YKY F + LNI M A +GE DFRN
Sbjct: 192 QLLPDDIRISAVCLRPPPNFDARFSCVHRHYKYIFNGKNLNIEKMSKAASYFVGERDFRN 251
Query: 245 FCKMDAT-NVHNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVG 303
FCK+D + + N++R I +I P + + GSAFLWHQVRCM+A+LFLVG
Sbjct: 252 FCKLDGSKQITNFKRTIISSKILPL-----SETFYCFDLIGSAFLWHQVRCMMAILFLVG 306
Query: 304 KGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEF----------EDIKFMCSSDA 353
+ LE P ++ L D KTP++P Y M++++PL+L C+F +D K + + A
Sbjct: 307 QSLEVPEIVLRLTDIEKTPQRPVYEMANDIPLLLYDCKFPEMDWQEPTVDDYKAIKFTTA 366
Query: 354 GEALRIHLVNECQTFQLQAAV 374
EAL +H ++L+AAV
Sbjct: 367 TEALTLH-------YELKAAV 380
>B3LUK8_YEAS1 (tr|B3LUK8) tRNA pseudouridine synthase OS=Saccharomyces cerevisiae
(strain RM11-1a) GN=SCRG_05546 PE=3 SV=1
Length = 442
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 147/381 (38%), Positives = 210/381 (55%), Gaps = 58/381 (15%)
Query: 14 LQARVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRKSEEKIEKMTGYNT 73
L R+ ELE N + HI E KK +S E+ T S +K+ +K +
Sbjct: 38 LIRRITELENANKPHSEKF--QHI-EDNKKRKISQEEVTRS--KAKKAPKKFD------- 85
Query: 74 RFMSHHSKRYVALKVMYFGKRFYGFASEAQMEP--TVESEIFKALAKIRLLVGDK-KESQ 130
S H+ R++AL+ Y G + G A + + P TVE I +A+ K +L+ ++ +
Sbjct: 86 --FSKHNTRFIALRFAYLGWNYNGLAVQKEFTPLPTVEGTILEAMNKCKLVPSMVLQDYK 143
Query: 131 YSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEG-----EIDYVRVLN 185
+SRCGRTDKGVS++ QVI+L +RSNL EEQ + EI YV VLN
Sbjct: 144 FSRCGRTDKGVSAMNQVISLEVRSNL------------TDEEQRDPTNDSREIPYVHVLN 191
Query: 186 RVLPNDIRILGWC-PAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRN 244
++LP+DIRI C P +F ARFSC+ R YKY F + LNI M A +GE DFRN
Sbjct: 192 QLLPDDIRISAVCLRPPPNFDARFSCVHRHYKYIFNGKNLNIEKMSKAASYFVGERDFRN 251
Query: 245 FCKMDAT-NVHNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVG 303
FCK+D + + N++R I +I P + + GSAFLWHQVRCM+A+LFLVG
Sbjct: 252 FCKLDGSKQITNFKRTIISSKILPL-----SETFYCFDLIGSAFLWHQVRCMMAILFLVG 306
Query: 304 KGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEF----------EDIKFMCSSDA 353
+ LE P ++ L D KTP++P Y M++++PL+L C+F +D K + + A
Sbjct: 307 QSLEVPEIVLRLTDIEKTPQRPVYEMANDIPLLLYDCKFPEMDWQEPTVDDYKAIKFTTA 366
Query: 354 GEALRIHLVNECQTFQLQAAV 374
EAL +H ++L+AAV
Sbjct: 367 TEALTLH-------YELKAAV 380
>N1P4N2_YEASX (tr|N1P4N2) Deg1p OS=Saccharomyces cerevisiae CEN.PK113-7D
GN=CENPK1137D_3381 PE=4 SV=1
Length = 442
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 145/374 (38%), Positives = 210/374 (56%), Gaps = 44/374 (11%)
Query: 14 LQARVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRKSEEKIEKMTGYNT 73
L R+ ELE N + HI E KK +S E+ T S +K+ +K +
Sbjct: 38 LIRRITELENANKPHSEKF--QHI-EDNKKRKISQEEVTRS--KAKKAPKKFD------- 85
Query: 74 RFMSHHSKRYVALKVMYFGKRFYGFASEAQMEP--TVESEIFKALAKIRLLVGDK-KESQ 130
S H+ R++AL+ Y G + G A + + P TVE I +A+ K +L+ ++ +
Sbjct: 86 --FSKHNTRFIALRFAYLGWNYNGLAVQKEFTPLPTVEGTILEAMNKCKLVPSMVLQDYK 143
Query: 131 YSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEG-----EIDYVRVLN 185
+SRCGRTDKGVS++ QVI+L +RSNL EEQ + EI YV VLN
Sbjct: 144 FSRCGRTDKGVSAMNQVISLEVRSNL------------TDEEQRDPTNDSREIPYVHVLN 191
Query: 186 RVLPNDIRILGWC-PAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRN 244
++LP+DIRI C P +F ARFSC+ R YKY F + LNI M A +GE DFRN
Sbjct: 192 QLLPDDIRISAVCLRPPPNFDARFSCVHRHYKYIFNGKNLNIEKMSKAASYFVGERDFRN 251
Query: 245 FCKMDAT-NVHNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVG 303
FCK+D + + N++R I +I P + + GSAFLWHQVRCM+A+LFLVG
Sbjct: 252 FCKLDGSKQITNFKRTIISSKILPL-----SETFYCFDLIGSAFLWHQVRCMMAILFLVG 306
Query: 304 KGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFM-CSSDAGEALRIHLV 362
+ LE P ++ L D KTP++P Y M++++PL+L C+F ++ + S D +A++
Sbjct: 307 QSLEVPEIVLRLTDIEKTPQRPVYEMANDIPLLLYDCKFPEMDWQEPSVDDYKAIKFTTA 366
Query: 363 NECQT--FQLQAAV 374
E T ++L+AAV
Sbjct: 367 TEALTLHYELKAAV 380
>H0GUA6_9SACH (tr|H0GUA6) tRNA pseudouridine synthase OS=Saccharomyces cerevisiae
x Saccharomyces kudriavzevii VIN7 GN=VIN7_6882 PE=3 SV=1
Length = 437
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 142/360 (39%), Positives = 199/360 (55%), Gaps = 43/360 (11%)
Query: 17 RVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRKSEEKIEKMTGYNTRFM 76
R+ ELE N Q D H E K K RK K + G
Sbjct: 40 RIAELENAN----KQHPDEPQHTEENKKR----------KLPRKEVIKTKTKIGQKKFDF 85
Query: 77 SHHSKRYVALKVMYFGKRFYGFASEAQMEP--TVESEIFKALAKIRLLVG-DKKESQYSR 133
S H+ R +AL+ Y G + G A + + P TVE I +A+ K +L+ +E ++SR
Sbjct: 86 SRHNTRLIALRFAYLGWNYNGLAIQKEYTPLPTVEGIILEAMNKCKLVPSLVLQEYKFSR 145
Query: 134 CGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEG-EIDYVRVLNRVLPNDI 192
CGRTDKGVS++ QVI+L +RSNL ++ E ++ ++ EI YVRVLN++LP+DI
Sbjct: 146 CGRTDKGVSAMNQVISLKVRSNL--------TNEEQLDPANDCREISYVRVLNQLLPDDI 197
Query: 193 RILGWC-PAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMDAT 251
RI C P DF ARFSC+ R YKY F + LNI M A +GE+DFRNFCK+D +
Sbjct: 198 RISAVCLRPPPDFDARFSCVHRHYKYVFNGKNLNIDKMSKAASYFLGENDFRNFCKLDGS 257
Query: 252 -NVHNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLESPN 310
+ N++R + +I P + + + GSAFLWHQVRCM+A+LFL G+ LE P
Sbjct: 258 KQITNFKRTMLSSKILPL-----SDTFYCFDLIGSAFLWHQVRCMMAILFLAGQELEEPE 312
Query: 311 VIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEF----------EDIKFMCSSDAGEALRIH 360
++ LLD KTP++P Y M+ ++PL+L CEF +D K + + A EAL +H
Sbjct: 313 MVLRLLDIEKTPQRPIYDMADDIPLLLYDCEFPQLEWQETAVDDCKSIRVTTATEALTLH 372
>J4TZ95_SACK1 (tr|J4TZ95) tRNA pseudouridine synthase OS=Saccharomyces
kudriavzevii (strain ATCC MYA-4449 / AS 2.2408 / CBS
8840 / NBRC 1802 / NCYC 2889) GN=YFL001W PE=3 SV=1
Length = 441
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 127/301 (42%), Positives = 182/301 (60%), Gaps = 29/301 (9%)
Query: 76 MSHHSKRYVALKVMYFGKRFYGFASEAQMEP--TVESEIFKALAKIRLLVG-DKKESQYS 132
S H+ R +AL+ Y G + G A + + P TVE I +A+ K +L+ +E ++S
Sbjct: 85 FSRHNTRLIALRFAYLGWNYNGLAIQKEYTPLPTVEGIILEAMNKCKLVPSLVLQEYKFS 144
Query: 133 RCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEG-EIDYVRVLNRVLPND 191
RCGRTDKGVS++ QVI+L +RSNL ++ E ++ ++ EI YVRVLN++LP+D
Sbjct: 145 RCGRTDKGVSAMNQVISLKVRSNL--------TNEEQLDSANDCREISYVRVLNQLLPDD 196
Query: 192 IRILGWC-PAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMDA 250
IRI C P DF ARFSC+ R YKY F + LNI M A +GE+DFRNFCK+D
Sbjct: 197 IRISAVCLRPPPDFDARFSCVHRHYKYVFNGKNLNIDKMSKAASYFLGENDFRNFCKLDG 256
Query: 251 T-NVHNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLESP 309
+ + N++R + +I P + + + GSAFLWHQVRCM+A+LFL G+ LE P
Sbjct: 257 SKQITNFKRTMLSSKILPL-----SDTFYCFDLIGSAFLWHQVRCMMAILFLAGQELEEP 311
Query: 310 NVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEF----------EDIKFMCSSDAGEALRI 359
++ LLD KTP++P Y M+ ++PL+L CEF +D K + + A EAL +
Sbjct: 312 EMVLRLLDIEKTPQRPIYDMADDIPLLLYDCEFPQLEWQETAVDDCKSIRVTTATEALTL 371
Query: 360 H 360
H
Sbjct: 372 H 372
>G2WDD9_YEASK (tr|G2WDD9) tRNA pseudouridine synthase OS=Saccharomyces cerevisiae
(strain Kyokai no. 7 / NBRC 101557) GN=K7_DEG1 PE=3 SV=1
Length = 442
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 145/376 (38%), Positives = 209/376 (55%), Gaps = 48/376 (12%)
Query: 14 LQARVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRKSEEKIEKMTGYNT 73
L R+ ELE N + HI E KK +S E+ T S +K+ +K +
Sbjct: 38 LIRRITELENANKPHSEKF--QHI-EDNKKRKISQEEVTRS--KAKKAPKKFD------- 85
Query: 74 RFMSHHSKRYVALKVMYFGKRFYGFASEAQMEP--TVESEIFKALAKIRLLVGDK-KESQ 130
S H+ R++AL+ Y G + G A + + P TVE I +A+ K +L+ ++ +
Sbjct: 86 --FSKHNTRFIALRFAYLGWNYNGLAVQKEYTPLPTVEGTILEAMNKCKLVPSMVLQDYK 143
Query: 131 YSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDYVRVLNRVLPN 190
+SRCGRTDKGVS++ QVI+L +RSNL G+ + E I YV VLN++LP+
Sbjct: 144 FSRCGRTDKGVSAMNQVISLEVRSNL-----TDEEQGDPTNDSRE--IPYVHVLNQLLPD 196
Query: 191 DIRILGWC-PAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMD 249
DIRI C P +F ARFSC+ R YKY F + LNI M A +GE DFRNFCK+D
Sbjct: 197 DIRISAVCLRPPPNFDARFSCVHRHYKYIFNGKNLNIEKMSKAASYFVGERDFRNFCKLD 256
Query: 250 AT-NVHNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLES 308
+ + N++R I +I P + + GSAFLWHQVRCM+A+LFLVG+ LE
Sbjct: 257 GSKQITNFKRTIISSKILPL-----SETFYCFDLIGSAFLWHQVRCMMAILFLVGQSLEV 311
Query: 309 PNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEF----------EDIKFMCSSDAGEALR 358
P ++ L D KTP++P Y M++++PL+L C+F +D K + + A EAL
Sbjct: 312 PEIVLRLTDIEKTPQRPVYEMANDIPLLLYDCKFPEMDWQEPTVDDYKAIKFTTATEALT 371
Query: 359 IHLVNECQTFQLQAAV 374
+H ++L+AAV
Sbjct: 372 LH-------YELKAAV 380
>F2QNK5_PICP7 (tr|F2QNK5) tRNA pseudouridine synthase OS=Komagataella pastoris
(strain ATCC 76273 / CBS 7435 / CECT 11047 / NRRL
Y-11430 / Wegner 21-1) GN=PP7435_Chr1-0277 PE=3 SV=1
Length = 422
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 121/285 (42%), Positives = 175/285 (61%), Gaps = 16/285 (5%)
Query: 82 RYVALKVMYFGKRFYGFA--SEAQMEPTVESEIFKALAKIRLLVG-DKKESQYSRCGRTD 138
R +ALK Y G + G A EA PT+E +I +AL + R++ + + +SRCGRTD
Sbjct: 48 RQIALKFSYLGWNYQGLAVQREATDLPTIEFKILEALRQCRMIPSLNPIDCAFSRCGRTD 107
Query: 139 KGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDYVRVLNRVLPNDIRILGWC 198
KGVS++ QVI L +RS L + E E+DY+ +LN++LP+DIRI G C
Sbjct: 108 KGVSAMNQVIGLNVRSRLTPEELES-------PENDIKELDYINILNQLLPSDIRIHGVC 160
Query: 199 -PAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMD-ATNVHNY 256
P F ARFSC R YKY F EGL++ +M+ A G HDFRNFCK+D A + NY
Sbjct: 161 LRPPKGFDARFSCRGRHYKYVFQDEGLDLESMKKAAPMFEGVHDFRNFCKVDGAKQMTNY 220
Query: 257 RRHITMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLESPNVIDMLL 316
R + +I P + G +V ++G+AFLWHQVRCMVA+L ++G+G ESP+++ LL
Sbjct: 221 TRAVRSSQILPLE---GHPGYYVFDLKGTAFLWHQVRCMVAILLMIGQGFESPDIVSKLL 277
Query: 317 DTNKTPRKPQYIMSSEVPLVLQSCEF-EDIKFMCSSDAGEALRIH 360
D P+KP Y+M+ ++PLVL C + +D+ F +++A + L+ H
Sbjct: 278 DIQSHPQKPVYVMAHDIPLVLYDCIYDDDVNFQPATNANKILKSH 322
>A7A238_YEAS7 (tr|A7A238) tRNA pseudouridine synthase OS=Saccharomyces cerevisiae
(strain YJM789) GN=DEG1 PE=3 SV=1
Length = 442
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 147/381 (38%), Positives = 210/381 (55%), Gaps = 58/381 (15%)
Query: 14 LQARVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRKSEEKIEKMTGYNT 73
L R+ ELE N + HI E KK +S E+ T S +K+ +K +
Sbjct: 38 LIRRITELENANKPHSEKF--QHI-EDNKKRKISQEEVTRS--KAKKAPKKFD------- 85
Query: 74 RFMSHHSKRYVALKVMYFGKRFYGFASEAQMEP--TVESEIFKALAKIRLLVGDK-KESQ 130
S H+ R++AL+ Y G + G A + + P TVE I +A+ K +L+ ++ +
Sbjct: 86 --FSKHNTRFIALRFAYLGWNYNGLAVQKEYTPLPTVEGTILEAMNKCKLVPSMVLQDYK 143
Query: 131 YSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEG-----EIDYVRVLN 185
+SRCGRTDKGVS++ QVI+L +RSNL EEQ + EI YV VLN
Sbjct: 144 FSRCGRTDKGVSAMNQVISLEVRSNL------------TDEEQRDPTNDSREIPYVHVLN 191
Query: 186 RVLPNDIRILGWC-PAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRN 244
++LP+DIRI C P +F ARFSC+ R YKY F + LNI M A +GE DFRN
Sbjct: 192 QLLPDDIRISAVCLRPPPNFDARFSCVHRHYKYIFNGKNLNIEKMSKAASYFVGERDFRN 251
Query: 245 FCKMDAT-NVHNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVG 303
FCK+D + + N++R I +I P + + GSAFLWHQVRCM+A+LFLVG
Sbjct: 252 FCKLDGSKQITNFKRTIISSKILPL-----SETFYCFDLIGSAFLWHQVRCMMAILFLVG 306
Query: 304 KGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEF----------EDIKFMCSSDA 353
+ LE P ++ L D KTP++P Y M++++PL+L C+F +D K + + A
Sbjct: 307 QSLEVPEIVLRLTDIEKTPQRPVYEMANDIPLLLYDCKFPEMDWQEPTVDDYKAIKFTTA 366
Query: 354 GEALRIHLVNECQTFQLQAAV 374
EAL +H ++L+AAV
Sbjct: 367 TEALTLH-------YELKAAV 380
>C4QVR2_PICPG (tr|C4QVR2) tRNA pseudouridine synthase OS=Komagataella pastoris
(strain GS115 / ATCC 20864) GN=PAS_chr1-3_0271 PE=3 SV=1
Length = 438
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 121/285 (42%), Positives = 175/285 (61%), Gaps = 16/285 (5%)
Query: 82 RYVALKVMYFGKRFYGFA--SEAQMEPTVESEIFKALAKIRLLVG-DKKESQYSRCGRTD 138
R +ALK Y G + G A EA PT+E +I +AL + R++ + + +SRCGRTD
Sbjct: 64 RQIALKFSYLGWNYQGLAVQREATDLPTIEFKILEALRQCRMIPSLNPIDCAFSRCGRTD 123
Query: 139 KGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDYVRVLNRVLPNDIRILGWC 198
KGVS++ QVI L +RS L + E E+DY+ +LN++LP+DIRI G C
Sbjct: 124 KGVSAMNQVIGLNVRSRLTPEELES-------PENDIKELDYINILNQLLPSDIRIHGVC 176
Query: 199 -PAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMD-ATNVHNY 256
P F ARFSC R YKY F EGL++ +M+ A G HDFRNFCK+D A + NY
Sbjct: 177 LRPPKGFDARFSCRGRHYKYVFQDEGLDLESMKKAAPMFEGVHDFRNFCKVDGAKQMTNY 236
Query: 257 RRHITMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLESPNVIDMLL 316
R + +I P + G +V ++G+AFLWHQVRCMVA+L ++G+G ESP+++ LL
Sbjct: 237 TRAVRSSQILPLE---GHPGYYVFDLKGTAFLWHQVRCMVAILLMIGQGFESPDIVSKLL 293
Query: 317 DTNKTPRKPQYIMSSEVPLVLQSCEF-EDIKFMCSSDAGEALRIH 360
D P+KP Y+M+ ++PLVL C + +D+ F +++A + L+ H
Sbjct: 294 DIQSHPQKPVYVMAHDIPLVLYDCIYDDDVNFQPATNANKILKSH 338
>C7Z0Y2_NECH7 (tr|C7Z0Y2) Predicted protein OS=Nectria haematococca (strain
77-13-4 / ATCC MYA-4622 / FGSC 9596 / MPVI)
GN=NECHADRAFT_93324 PE=3 SV=1
Length = 530
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 143/337 (42%), Positives = 188/337 (55%), Gaps = 75/337 (22%)
Query: 77 SHHSKRYVALKVMYFGKRFYGFASEAQME-PTVESEIFKALAKIRLL------VGDKKES 129
S +S R++ALK+ Y GK + GF +A P++E E++ AL K L+ V D +
Sbjct: 50 SKYSTRFIALKLAYLGKNYGGFEFQAMANAPSIEEELWNALTKACLIFPKDERVVDFECC 109
Query: 130 QYSRCGRTDKGVSSVGQVIALYLRSNL-------KISGAN--------TGSSGEIVEEQH 174
+YS+CGRTDKGVS+ GQVI L +RSN ++S A TG +GE EE +
Sbjct: 110 EYSKCGRTDKGVSAFGQVIGLRVRSNRPLPKKRRRLSEAGDAMVVDEPTGENGE--EEDY 167
Query: 175 ---------EGEIDYVRVLNRVLPNDIRILGWCPAPV-DFHARFSCLSREYKYFFWKEG- 223
+ E+ Y R+LNRVLP DIRIL WCP+P DF ARFSC R+Y+YFF +
Sbjct: 168 IETSSFDPIKDELQYPRLLNRVLPPDIRILAWCPSPPPDFSARFSCRERQYRYFFTQPAF 227
Query: 224 -------------LNIPAMESAGIKLIGEHDFRNFCKMD-ATNVHNYRRHITMFEIFPTD 269
L+I AM A + GEHDFRNFCK+D + N+ R+I FE +
Sbjct: 228 TPEPTAGGAKNGWLDIEAMRDAAKRYEGEHDFRNFCKIDPGKQITNFVRNI--FEADIKE 285
Query: 270 VR--------YGGNQ----------------LWVIKIRGSAFLWHQVRCMVAVLFLVGKG 305
VR G+Q +++ ++RGSAFLWHQ+R MV VLFLVG+
Sbjct: 286 VRDVSSALPYLSGSQYAPAGGVVDKDAVHPKVYMFQVRGSAFLWHQIRHMVGVLFLVGQR 345
Query: 306 LESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEF 342
LE P VI LLD K+P KP Y+M+ EVPLVL C F
Sbjct: 346 LEKPEVISTLLDVAKSPCKPNYVMADEVPLVLWDCIF 382
>G8JWE4_ERECY (tr|G8JWE4) tRNA pseudouridine synthase OS=Eremothecium cymbalariae
(strain CBS 270.75 / DBVPG 7215 / KCTC 17166 / NRRL
Y-17582) GN=Ecym_7325 PE=3 SV=1
Length = 431
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 131/315 (41%), Positives = 187/315 (59%), Gaps = 26/315 (8%)
Query: 39 EMEKKLHVSGEKNTGSIKGNRKSEEKIEKMTGYNTRFMSHHSKRYVALKVMYFGKRFYGF 98
E+E K H + + KG RK + + + YNTRF +ALK Y G + G
Sbjct: 48 EVEDKKHKRVKTEGVAKKGKRKQYREFD-FSKYNTRF--------IALKFAYLGWNYNGL 98
Query: 99 A--SEAQMEPTVESEIFKALAKIRLLVG-DKKESQYSRCGRTDKGVSSVGQVIALYLRSN 155
A E PTVE I +A++K +L+ ++ +SRCGRTDKGVS++ QVI+L +RSN
Sbjct: 99 AIQKEPTPLPTVEGTILEAMSKCKLVPSMVPQDYNFSRCGRTDKGVSAMNQVISLSVRSN 158
Query: 156 LKISGANTGSSGEIVEEQHEGEIDYVRVLNRVLPNDIRILGWCPAPVD-FHARFSCLSRE 214
L + ++ EI YV +LN++LP+DIR+ C P + F ARFSC R
Sbjct: 159 L-------TAEEQLDPANDSKEIPYVHILNQLLPDDIRVSAVCLRPPEGFDARFSCKYRH 211
Query: 215 YKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMDAT-NVHNYRRHITMFEIFPTDVRYG 273
YKY F K+ LNI M+ A IGEHDFRNFCK+D + + NY+R I +I D
Sbjct: 212 YKYLFKKDSLNIDLMQEAAKMYIGEHDFRNFCKLDGSKQITNYKRVILSSQILHID---- 267
Query: 274 GNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEV 333
++ + GSAFLWHQVRCM+A LFL+G+ LE ++I LL +K P+KP Y ++S++
Sbjct: 268 -GDMYCFDLIGSAFLWHQVRCMMANLFLIGQELEDISLISNLLSPSKYPQKPIYELASDI 326
Query: 334 PLVLQSCEFEDIKFM 348
PL+L C+FE+I+++
Sbjct: 327 PLILYDCKFENIEWL 341
>H0GFN5_9SACH (tr|H0GFN5) tRNA pseudouridine synthase OS=Saccharomyces cerevisiae
x Saccharomyces kudriavzevii VIN7 GN=VIN7_1519 PE=3 SV=1
Length = 442
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 147/381 (38%), Positives = 210/381 (55%), Gaps = 58/381 (15%)
Query: 14 LQARVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRKSEEKIEKMTGYNT 73
L R+ ELE N + HI E KK +S E+ T S +K+ +K +
Sbjct: 38 LIRRITELENANKPHSEKF--QHI-EDNKKRKISQEEVTRS--KAKKAPKKFD------- 85
Query: 74 RFMSHHSKRYVALKVMYFGKRFYGFASEAQMEP--TVESEIFKALAKIRLLVGDK-KESQ 130
S H+ R++AL+ Y G + G A + + P TVE I +A+ K +L+ ++ +
Sbjct: 86 --FSKHNTRFIALRFAYLGWNYNGLAVQKEFTPLPTVEGTILEAMNKCKLVPSMVLQBYK 143
Query: 131 YSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEG-----EIDYVRVLN 185
+SRCGRTDKGVS++ QVI+L +RSNL EEQ + EI YV VLN
Sbjct: 144 FSRCGRTDKGVSAMNQVISLEVRSNL------------TDEEQRDPTNDSREIPYVHVLN 191
Query: 186 RVLPNDIRILGWC-PAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRN 244
++LP+DIRI C P +F ARFSC+ R YKY F + LNI M A +GE DFRN
Sbjct: 192 QLLPDDIRISAVCLRPPPNFDARFSCVHRHYKYIFNGKNLNIEKMSKAASYFVGERDFRN 251
Query: 245 FCKMDAT-NVHNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVG 303
FCK+D + + N++R I +I P + + GSAFLWHQVRCM+A+LFLVG
Sbjct: 252 FCKLDGSKQITNFKRTIISSKILPL-----SETFYCFDLIGSAFLWHQVRCMMAILFLVG 306
Query: 304 KGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEF----------EDIKFMCSSDA 353
+ LE P ++ L D KTP++P Y M++++PL+L C+F +D K + + A
Sbjct: 307 QSLEVPEIVLRLTDIEKTPQRPVYEMANDIPLLLYDCKFPEMDWQEPTVDDYKAIKFTTA 366
Query: 354 GEALRIHLVNECQTFQLQAAV 374
EAL +H ++L+AAV
Sbjct: 367 TEALTLH-------YELKAAV 380
>E7LU00_YEASV (tr|E7LU00) tRNA pseudouridine synthase OS=Saccharomyces cerevisiae
(strain VIN 13) GN=VIN13_1490 PE=3 SV=1
Length = 442
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 147/381 (38%), Positives = 210/381 (55%), Gaps = 58/381 (15%)
Query: 14 LQARVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRKSEEKIEKMTGYNT 73
L R+ ELE N + HI E KK +S E+ T S +K+ +K +
Sbjct: 38 LIRRITELENANKPHSEKF--QHI-EDNKKRKISQEEVTRS--KAKKAPKKFD------- 85
Query: 74 RFMSHHSKRYVALKVMYFGKRFYGFASEAQMEP--TVESEIFKALAKIRLLVGDK-KESQ 130
S H+ R++AL+ Y G + G A + + P TVE I +A+ K +L+ ++ +
Sbjct: 86 --FSKHNTRFIALRFAYLGWNYNGLAVQKEFTPLPTVEGTILEAMNKCKLVPSMVLQBYK 143
Query: 131 YSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEG-----EIDYVRVLN 185
+SRCGRTDKGVS++ QVI+L +RSNL EEQ + EI YV VLN
Sbjct: 144 FSRCGRTDKGVSAMNQVISLEVRSNL------------TDEEQRDPTNDSREIPYVHVLN 191
Query: 186 RVLPNDIRILGWC-PAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRN 244
++LP+DIRI C P +F ARFSC+ R YKY F + LNI M A +GE DFRN
Sbjct: 192 QLLPDDIRISAVCLRPPPNFDARFSCVHRHYKYIFNGKNLNIEKMSKAASYFVGERDFRN 251
Query: 245 FCKMDAT-NVHNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVG 303
FCK+D + + N++R I +I P + + GSAFLWHQVRCM+A+LFLVG
Sbjct: 252 FCKLDGSKQITNFKRTIISSKILPL-----SETFYCFDLIGSAFLWHQVRCMMAILFLVG 306
Query: 304 KGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEF----------EDIKFMCSSDA 353
+ LE P ++ L D KTP++P Y M++++PL+L C+F +D K + + A
Sbjct: 307 QSLEVPEIVLRLTDIEKTPQRPVYEMANDIPLLLYDCKFPEMDWQEPTVDDYKAIKFTTA 366
Query: 354 GEALRIHLVNECQTFQLQAAV 374
EAL +H ++L+AAV
Sbjct: 367 TEALTLH-------YELKAAV 380
>C8Z7T3_YEAS8 (tr|C8Z7T3) tRNA pseudouridine synthase OS=Saccharomyces cerevisiae
(strain Lalvin EC1118 / Prise de mousse)
GN=EC1118_1F14_0892g PE=3 SV=1
Length = 442
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 147/381 (38%), Positives = 210/381 (55%), Gaps = 58/381 (15%)
Query: 14 LQARVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRKSEEKIEKMTGYNT 73
L R+ ELE N + HI E KK +S E+ T S +K+ +K +
Sbjct: 38 LIRRITELENANKPHSEKF--QHI-EDNKKRKISQEEVTRS--KAKKAPKKFD------- 85
Query: 74 RFMSHHSKRYVALKVMYFGKRFYGFASEAQMEP--TVESEIFKALAKIRLLVGDKKES-Q 130
S H+ R++AL+ Y G + G A + + P TVE I +A+ K +L+ ++ +
Sbjct: 86 --FSKHNTRFIALRFAYLGWNYNGLAVQKEFTPLPTVEGTILEAMNKCKLVPSMVLQNYK 143
Query: 131 YSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEG-----EIDYVRVLN 185
+SRCGRTDKGVS++ QVI+L +RSNL EEQ + EI YV VLN
Sbjct: 144 FSRCGRTDKGVSAMNQVISLEVRSNL------------TDEEQRDPTNDSREIPYVHVLN 191
Query: 186 RVLPNDIRILGWC-PAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRN 244
++LP+DIRI C P +F ARFSC+ R YKY F + LNI M A +GE DFRN
Sbjct: 192 QLLPDDIRISAVCLRPPPNFDARFSCVHRHYKYIFNGKNLNIEKMSKAASYFVGERDFRN 251
Query: 245 FCKMDAT-NVHNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVG 303
FCK+D + + N++R I +I P + + GSAFLWHQVRCM+A+LFLVG
Sbjct: 252 FCKLDGSKQITNFKRTIISSKILPL-----SETFYCFDLIGSAFLWHQVRCMMAILFLVG 306
Query: 304 KGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEF----------EDIKFMCSSDA 353
+ LE P ++ L D KTP++P Y M++++PL+L C+F +D K + + A
Sbjct: 307 QSLEVPEIVLRLTDIEKTPQRPVYEMANDIPLLLYDCKFPEMDWQEPTVDDYKAIKFTTA 366
Query: 354 GEALRIHLVNECQTFQLQAAV 374
EAL +H ++L+AAV
Sbjct: 367 TEALTLH-------YELKAAV 380
>A3LX03_PICST (tr|A3LX03) tRNA pseudouridine synthase OS=Scheffersomyces stipitis
(strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL
Y-11545) GN=DEG1 PE=3 SV=2
Length = 465
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 118/278 (42%), Positives = 172/278 (61%), Gaps = 17/278 (6%)
Query: 76 MSHHSKRYVALKVMYFGKRFYGFA--SEAQMEPTVESEIFKALAKIRLLVGDKKES-QYS 132
M+ ++KR++ALK Y G + G A SE PTVE + KAL RL+ + ++S
Sbjct: 83 MNKYNKRFIALKFAYLGWNYNGLAYQSEPTPLPTVEEVVLKALTMSRLITEPTPDKCKFS 142
Query: 133 RCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDYVRVLNRVLPNDI 192
RCGRTDKGVS++ QVI+L +RSNL ++++E EI Y+ ++N +LP DI
Sbjct: 143 RCGRTDKGVSAMNQVISLVVRSNL-------NEEEQLLKENDHKEIKYLSIINALLPPDI 195
Query: 193 RILGWC-PAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMDAT 251
R+ C P F ARFSC R Y+Y F K L+I M A IK IG HDFRNFCK+D +
Sbjct: 196 RMTAVCLRPPPKFDARFSCDYRHYRYLFKKHDLDIELMNEACIKYIGSHDFRNFCKIDGS 255
Query: 252 -NVHNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLESPN 310
+ NY R E++ + + + + + ++GSAFLWHQVRCMVA+LFL+G+ LE+
Sbjct: 256 KQITNYVR-----EVYSMKIIHLKDDFYAVDLKGSAFLWHQVRCMVAILFLIGQKLEATT 310
Query: 311 VIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFM 348
+I+ L D K P KP Y M++++PLVL C + +++++
Sbjct: 311 IIEDLFDLEKYPTKPVYEMANDIPLVLYDCIYPEMEWL 348
>H1VUT6_COLHI (tr|H1VUT6) tRNA pseudouridine synthase OS=Colletotrichum
higginsianum (strain IMI 349063) GN=CH063_13539 PE=3
SV=1
Length = 482
Score = 228 bits (581), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 139/343 (40%), Positives = 183/343 (53%), Gaps = 84/343 (24%)
Query: 77 SHHSKRYVALKVMYFGKRFYGF--ASEAQMEPTVESEIFKALAKIRLLVGDKKE------ 128
S +S R++ALK Y GKR+ GF AS A + PT+E E++ AL K L+ + E
Sbjct: 4 SRYSSRFIALKFAYLGKRYGGFEYASSASL-PTIEGELWNALTKACLIFPEDPEVVNFDC 62
Query: 129 SQYSRCGRTDKGVSSVGQVIALYLRSNL-------------------------KISGANT 163
+YS+CGRTD+GVS+ GQVIAL +RS+ K G
Sbjct: 63 CEYSKCGRTDRGVSAFGQVIALRVRSSKPLPKKPEEQAIPETEGDTAMEGTVEKAEGEED 122
Query: 164 GSSGEIVEEQHEGEIDYVRVLNRVLPNDIRILGWCPAPVD-FHARFSCLSREYKYFF--- 219
E + E EI YV+VLNR+LP+DIR++ WCPAP F ARFSC R+Y+YFF
Sbjct: 123 NKKPEKEWDDIEDEIPYVKVLNRLLPDDIRVIAWCPAPPPGFSARFSCEERQYRYFFTQP 182
Query: 220 -----------------WKEG-LNIPAMESAGIKLIGEHDFRNFCKMDATNVHNYRRHIT 261
+EG L+I AM A + +G+HDFRNFCK+D + + IT
Sbjct: 183 AFTPTAVTATDGAPPDGLREGYLDIEAMNEAARRFVGDHDFRNFCKVDGS------KQIT 236
Query: 262 MFE----------------IFP---TDVRYGGNQL---WVIKIRGSAFLWHQVRCMVAVL 299
FE + P D G ++L + IRG+AFLWHQ+R MV +L
Sbjct: 237 SFERRMYEAGVEEXQDVGSVLPYLGRDAADGNDKLPRVYSFNIRGTAFLWHQIRHMVTIL 296
Query: 300 FLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEF 342
FLVG+ LE P+VI LLD KTPRKP Y ++ E PLVL +C F
Sbjct: 297 FLVGQRLEGPDVITRLLDVEKTPRKPNYDLAHETPLVLWNCVF 339
>E9ERL6_METAR (tr|E9ERL6) Putative pseudouridine synthase 3 OS=Metarhizium
anisopliae (strain ARSEF 23 / ATCC MYA-3075)
GN=MAA_02612 PE=3 SV=1
Length = 564
Score = 228 bits (581), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 137/350 (39%), Positives = 189/350 (54%), Gaps = 84/350 (24%)
Query: 77 SHHSKRYVALKVMYFGKRFYGFASEAQ-MEPTVESEIFKALAKIRLLVGDKKE------S 129
S +S R++ALK+ Y GK + GF +A +P++E E++ AL + L+ + +
Sbjct: 74 SRYSTRFIALKLAYLGKNYGGFEFQAMGNQPSIEEELWNALTRACLIFPEDERIVQFDCC 133
Query: 130 QYSRCGRTDKGVSSVGQVIALYLRSNL---------------KISGANTGSSG------- 167
+YS+CGRTD+GVS+ GQVI L +RSN I+ A+ G
Sbjct: 134 EYSKCGRTDRGVSAFGQVIGLKVRSNRPLPKKRAETDVAAAEDIALADADPQGVKQAEEE 193
Query: 168 -------EIVEEQHEGEIDYVRVLNRVLPNDIRILGWCPAPV-DFHARFSCLSREYKYFF 219
+ ++ H+ E+ Y R+LNR+LP+DIRIL WCP+P DF ARFSC R+Y+YFF
Sbjct: 194 VEAQEEDKPFDDIHD-ELCYPRILNRLLPDDIRILAWCPSPPPDFSARFSCRERQYRYFF 252
Query: 220 WKEG---------------------LNIPAMESAGIKLIGEHDFRNFCKMD-ATNVHNYR 257
+ L+I AM A + GEHDFRNFCK+D A + N+
Sbjct: 253 TQPAFAPDPTSLDLSGASKPLKAGWLDIDAMRDAAKRYEGEHDFRNFCKIDPAKQITNFH 312
Query: 258 RHITMFEIFPTDVRYGGN----------------------QLWVIKIRGSAFLWHQVRCM 295
R I FE +V+ G+ +++ +RGSAFLWHQ+R M
Sbjct: 313 RRI--FESDIVEVQGAGSVMPYLQTPGFSSPGLEGSGPYPKVYYFHVRGSAFLWHQIRHM 370
Query: 296 VAVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDI 345
VAVLFLVG+GLESP VI LLDT K P +P Y+M+ EVPLVL C F D+
Sbjct: 371 VAVLFLVGQGLESPTVISELLDTAKNPGRPSYVMADEVPLVLWDCIFPDL 420
>D2A375_TRICA (tr|D2A375) tRNA pseudouridine synthase OS=Tribolium castaneum
GN=NONGLEAN-OG9525 PE=3 SV=1
Length = 365
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 132/378 (34%), Positives = 197/378 (52%), Gaps = 39/378 (10%)
Query: 49 EKNTGSIKGNRKSEEKIEKMTGYNTRFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTV 108
E T ++ NR + + +S R+V LK +Y G + G+ ++ T+
Sbjct: 5 EDRTKEVETNRSISKSKNNFFVPPFKLISSCKFRHVLLKFLYLGWDYQGYVTQEDTVNTI 64
Query: 109 ESEIFKALAKIRLLVGDKKESQYSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGE 168
E +F AL K L+ ++ + Y RCGRTDK + S G
Sbjct: 65 EHHVFNALIKT-CLIENRSSANYHRCGRTDKDLRSNG----------------------- 100
Query: 169 IVEEQHEGEIDYVRVLNRVLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPA 228
+ E EI+Y ++LNRVLP +I+ + WCP F ARF C +R YKYFF K L+I A
Sbjct: 101 ---DDFESEINYCKILNRVLPENIQFVAWCPVESAFSARFDCKNRTYKYFFPKSNLDIDA 157
Query: 229 MESAGIKLIGEHDFRNFCKMDATN-VHNYRRHITMFEI--FPTDVRYGGNQLWVIKIRGS 285
M+ A L+G HDFRNFCKMD N V ++R+I +I F D RY + V+ I+G+
Sbjct: 158 MKIAANYLVGTHDFRNFCKMDVNNGVVEFKRNILSVDISLFQEDERYS---IQVLTIKGN 214
Query: 286 AFLWHQVRCMVAVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDI 345
AFLWHQ+RC+V +L LVG+G E P V+ LLD + PRKP Y M+SE+PL L C ++++
Sbjct: 215 AFLWHQIRCIVGILILVGQGKEKPEVVLDLLDITRNPRKPDYHMASEIPLNLYDCHYDNV 274
Query: 346 KFMCSSDAGEALRIHLVNECQTFQLQAAVFHEALLN----CVPLLHDQSLPPSRGTTKKK 401
++ +A ++ L ++ A+ L++ L HD +G K+
Sbjct: 275 NWIYDKEALNIVKAKLYKFWMFSSIKTAMMKSMLVDLEKEASELDHDSIDFLIQGV--KR 332
Query: 402 ASYVPLMSRPTEPSYEER 419
+YVP+M R S E++
Sbjct: 333 KNYVPVMKRQLCESLEDK 350
>J9NC48_FUSO4 (tr|J9NC48) Uncharacterized protein OS=Fusarium oxysporum f. sp.
lycopersici (strain 4287 / CBS 123668 / FGSC 9935 / NRRL
34936) GN=FOXG_12771 PE=3 SV=1
Length = 546
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 152/396 (38%), Positives = 201/396 (50%), Gaps = 81/396 (20%)
Query: 14 LQARVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRKSEEKIEKMTGYNT 73
L +VKELEAE L + E K E G E K K G
Sbjct: 15 LIQKVKELEAE-------LRNRPAPGPEPKPENQPENEEGD-------EAKRTKPKGKRK 60
Query: 74 RFMSHHSKRYVALKVMYFGKRFYGFASEAQME-PTVESEIFKALAKIRLLVGDKKE---- 128
S +S RY+ALK+ Y GK + GF +A P++E E++ AL K L+ + +
Sbjct: 61 MDPSKYSTRYIALKLAYLGKNYGGFEFQAMANAPSIEEELWNALTKACLIFPEDERIVDF 120
Query: 129 --SQYSRCGRTDKGVSSVGQVIALYLRSNLKISGANT--GSSGE--IVEEQH-------- 174
+YS+CGRTDKGVS+ GQVI L +RSN + +GE +V+EQ
Sbjct: 121 DCCEYSKCGRTDKGVSAFGQVIGLRVRSNRPLPKKRRRLSEAGEAMVVDEQAGENAEEEP 180
Query: 175 ----------EGEIDYVRVLNRVLPNDIRILGWCPAPV-DFHARFSCLSREYKYFFWKEG 223
+ E+ Y R+LNRVLP DIRIL WCP+P DF ARFSC R+Y+YFF +
Sbjct: 181 VEETPSFDDIKDELQYPRLLNRVLPPDIRILAWCPSPPPDFSARFSCRERQYRYFFTQPA 240
Query: 224 --------------LNIPAMESAGIKLIGEHDFRNFCKMD-ATNVHNYRRHITMFEI--- 265
L+I AM A + GEHDFRNFCK+D + N+ R I +I
Sbjct: 241 FTPEPSAGGARNGWLDIEAMREAAKRYEGEHDFRNFCKIDPGKQITNFVRTIYEADIEEV 300
Query: 266 --------FPTDVRY---GG--------NQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGL 306
+ + +Y GG +++ +RGSAFLWHQ+R MVAVLFL G+ L
Sbjct: 301 KDVSSALPYLSGSQYVPAGGLPNDGTVYPKVYSFNVRGSAFLWHQIRHMVAVLFLAGQKL 360
Query: 307 ESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEF 342
E+P+V+ LLD P KP Y+M+ EVPLVL C F
Sbjct: 361 ETPDVVTTLLDVKANPCKPNYVMADEVPLVLWDCIF 396
>G8YTD4_PICSO (tr|G8YTD4) tRNA pseudouridine synthase OS=Pichia sorbitophila
(strain ATCC MYA-4447 / BCRC 22081 / CBS 7064 / NBRC
10061 / NRRL Y-12695) GN=Piso0_000208 PE=3 SV=1
Length = 430
Score = 227 bits (578), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 120/276 (43%), Positives = 177/276 (64%), Gaps = 19/276 (6%)
Query: 79 HSKRYVALKVMYFGKRFYG--FASEAQMEPTVESEIFKALAKIRLLVG-DKKESQYSRCG 135
HSKR++A+K Y G + G F E PTVE EI KAL K +++ D SRCG
Sbjct: 70 HSKRFIAIKFAYLGWNYSGLSFQYEPAPLPTVEEEILKALEKAKIIPAVDPLCCDLSRCG 129
Query: 136 RTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEG-EIDYVRVLNRVLPNDIRI 194
RTD+GVS++ QV++L +RSNL ++ S ++G E+ Y+ +LN +LP DIR+
Sbjct: 130 RTDRGVSAMNQVMSLTVRSNLAPEEQDSTS--------NDGRELPYLAILNSLLPPDIRV 181
Query: 195 LGWC-PAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMDAT-N 252
C P +F+ARFSCL R+Y+YFF L++ M A K G HDFR+FCK+D +
Sbjct: 182 TAVCLHPPPNFNARFSCLYRQYRYFFRPHDLDVELMSKAAKKYEGVHDFRSFCKIDGSKQ 241
Query: 253 VHNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLESPNVI 312
+ NY+R I ++ P D ++L++++++G+AFLWHQVRCM AVLFLVG+ ES +VI
Sbjct: 242 ITNYKREILSADVLPYD-----DELYMLELKGTAFLWHQVRCMAAVLFLVGQKHESIDVI 296
Query: 313 DMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFM 348
D LL+ +K P KP Y M++++PLVL C + ++++
Sbjct: 297 DELLNVDKYPSKPNYEMANDIPLVLFDCVYPSMEWI 332
>Q6FKS7_CANGA (tr|Q6FKS7) tRNA pseudouridine synthase OS=Candida glabrata (strain
ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=CAGL0L08998g PE=3 SV=1
Length = 438
Score = 227 bits (578), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 121/272 (44%), Positives = 170/272 (62%), Gaps = 17/272 (6%)
Query: 76 MSHHSKRYVALKVMYFGKRFYGFASEAQMEP--TVESEIFKALAKIRLLVG-DKKESQYS 132
S ++ R++AL+ Y G + G A + P T+E I +AL K +L+ +E ++S
Sbjct: 80 FSKYNTRFIALRFAYLGWNYNGLAIQKDPTPLPTIEGTIIEALNKCKLVPSITPQEFEFS 139
Query: 133 RCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDYVRVLNRVLPNDI 192
RCGRTDKGVS++ QVI+L +RSNL T + H+ EI YV +LN++LP+DI
Sbjct: 140 RCGRTDKGVSAMNQVISLRVRSNL------TDEEQKDPRNDHK-EIQYVAILNQLLPDDI 192
Query: 193 RILGWCPAPVD-FHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMDAT 251
RI C P + F ARFSC R YKY F K+GL++ M+ A GEHDFRNFCK+D +
Sbjct: 193 RISAVCLRPPNSFDARFSCEYRHYKYLFHKDGLDLDRMQKAAKLYEGEHDFRNFCKLDGS 252
Query: 252 -NVHNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLESPN 310
+ NY R TM ++++ N + + GSAFLWHQVRCM A+LFLVG+GLE P
Sbjct: 253 KQITNYNR--TMIS---ANIKHVYNDFYCFDLIGSAFLWHQVRCMTAILFLVGQGLEEPT 307
Query: 311 VIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEF 342
+I+ +LD P+KP Y M+S++PL+L C+F
Sbjct: 308 LIEKMLDVTSMPQKPMYEMASDIPLLLYDCKF 339
>E3WZX2_ANODA (tr|E3WZX2) tRNA pseudouridine synthase OS=Anopheles darlingi
GN=AND_10418 PE=3 SV=1
Length = 376
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 129/325 (39%), Positives = 182/325 (56%), Gaps = 17/325 (5%)
Query: 29 LSQLADSHIHEMEKKLHVSGEKNTGSIKGNRKSEEKIEKMTGYNTR----FMSHHSKRYV 84
L QL+ + + K+L + ++ N K + K E N R F H KR++
Sbjct: 17 LLQLSKQELIDKIKQLEAHNSQLKCIVQKNLKPDTKKENGKPSNKRRAFDFSKCH-KRHI 75
Query: 85 ALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLVGDKKESQYSRCGRTDKGVSSV 144
L+ Y G + GFA++ T+E +F AL K+ L+ ++ S Y+RCGRTDKGVS+
Sbjct: 76 LLRFFYLGWDYQGFAAQEDSIETIEHHLFTALQKV-CLIESRETSNYNRCGRTDKGVSAF 134
Query: 145 GQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDYVRVLNRVLPNDIRILGWCP-APVD 203
QVI++ +RS + ++ E+ E+DY +LNRVLP +IR L W P
Sbjct: 135 HQVISIDVRSKI------APEDDQLSEDSLATELDYCGMLNRVLPEEIRCLAWMPMVNPG 188
Query: 204 FHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMDATN-VHNYRRHITM 262
+ ARF C SR Y+YFF + L I AM+ A L+G HDFRN CKMD N V N+ R I
Sbjct: 189 YSARFDCRSRTYRYFFPRGNLRIDAMQEACRHLVGAHDFRNLCKMDVGNGVVNFVRSIDE 248
Query: 263 FEIFPTDVR---YGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLESPNVIDMLLDTN 319
I + G + +++RG AFLWHQVRC++AVL LVG G E P ++ LLD +
Sbjct: 249 CTIHASQTDSSGMGSYDMMYLQLRGKAFLWHQVRCIMAVLLLVGDGKEDPTIVKELLDVD 308
Query: 320 KTPRKPQYIMSSEVPLVLQSCEFED 344
+ P KPQY M+S+VPL L C+F +
Sbjct: 309 RNPCKPQYSMASDVPLNLYDCQFNE 333
>I2H0H2_TETBL (tr|I2H0H2) tRNA pseudouridine synthase OS=Tetrapisispora blattae
(strain ATCC 34711 / CBS 6284 / DSM 70876 / NBRC 10599 /
NRRL Y-10934 / UCD 77-7) GN=TBLA0C00580 PE=3 SV=1
Length = 435
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 120/278 (43%), Positives = 171/278 (61%), Gaps = 18/278 (6%)
Query: 75 FMSHHSKRYVALKVMYFGKRFYGFASEAQMEP--TVESEIFKALAKIRLLVG-DKKESQY 131
F +H+ R++ALK Y G + G A + P TVE I +A+ K +L+ ++ +
Sbjct: 78 FSKYHT-RFIALKFAYLGWNYNGLAIQKDYTPLPTVEGTILEAMNKCKLVPSMSPQDYNF 136
Query: 132 SRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDYVRVLNRVLPND 191
SRCGRTDKGVS++ QVI+L +RSNL + ++ + EI YV +LN+VLP D
Sbjct: 137 SRCGRTDKGVSAMSQVISLNVRSNL-------SNEEQLNPLKDSDEIHYVDILNQVLPAD 189
Query: 192 IRILGWC-PAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMDA 250
IRI C P F+ARFSC + F K+ L+I M+ A GEHDFRNFCK+D
Sbjct: 190 IRISAVCLRPPSGFNARFSCYKSSLQVFIRKKNLDIEKMKIAAKLYQGEHDFRNFCKLDG 249
Query: 251 T-NVHNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLESP 309
+ + NY R I +I P + + + GSAFLWHQVRCM+A+LFL+G+GLE P
Sbjct: 250 SKQITNYNRTIISADILPIN-----GDFYCFDLVGSAFLWHQVRCMMAILFLIGQGLEEP 304
Query: 310 NVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKF 347
++I+++LD KTPRKP Y M+S+VPL+L C+F ++ +
Sbjct: 305 SLINLMLDIEKTPRKPIYDMASDVPLILYDCKFPEMNW 342
>F9G8X1_FUSOF (tr|F9G8X1) Uncharacterized protein OS=Fusarium oxysporum (strain
Fo5176) GN=FOXB_15103 PE=3 SV=1
Length = 546
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 152/396 (38%), Positives = 201/396 (50%), Gaps = 81/396 (20%)
Query: 14 LQARVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRKSEEKIEKMTGYNT 73
L +VKELEAE L + E K + E G E K K G
Sbjct: 15 LIQKVKELEAE-------LRNRPAPGPEPKPEIQPENEEGD-------EAKRTKPKGKRK 60
Query: 74 RFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPT-VESEIFKALAKIRLLVGDKKE---- 128
S +S RY+ALK+ Y GK + GF +A + +E E++ AL K L+ + +
Sbjct: 61 MDPSKYSTRYIALKLAYLGKNYGGFEFQAMANASSIEEELWNALTKACLIFPEDERIVDF 120
Query: 129 --SQYSRCGRTDKGVSSVGQVIALYLRSN--LKISGANTGSSGE--IVEEQH-------- 174
+YS+CGRTDKGVS+ GQVI L +RSN L +GE +V+EQ
Sbjct: 121 DCCEYSKCGRTDKGVSAFGQVIGLRVRSNRPLPKKRRRLSEAGEAMVVDEQAGENAEEEP 180
Query: 175 ----------EGEIDYVRVLNRVLPNDIRILGWCPAPV-DFHARFSCLSREYKYFFWKEG 223
+ E+ Y R+LNRVLP DIRIL WCP+P DF ARFSC R+Y+YFF +
Sbjct: 181 VEETPSFDDIKDELQYPRLLNRVLPPDIRILAWCPSPPPDFSARFSCRERQYRYFFTQPA 240
Query: 224 --------------LNIPAMESAGIKLIGEHDFRNFCKMD-ATNVHNYRRHITMFEI--- 265
L+I AM A + GEHDFRNFCK+D + N+ R I +I
Sbjct: 241 FTPEPSAGGARNGWLDIEAMREAAKRYEGEHDFRNFCKIDPGKQITNFVRTIYEADIEEV 300
Query: 266 --------FPTDVRY---GG--------NQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGL 306
+ + +Y GG +++ +RGSAFLWHQ+R MVAVLFL G+ L
Sbjct: 301 KDVSSTLPYLSGSQYVPAGGLPNDGTVYPKVYSFNVRGSAFLWHQIRHMVAVLFLAGQKL 360
Query: 307 ESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEF 342
E+P+V+ LLD P KP Y+M+ EVPLVL C F
Sbjct: 361 ETPDVVTTLLDVKANPCKPNYVMADEVPLVLWDCIF 396
>Q7Q242_ANOGA (tr|Q7Q242) tRNA pseudouridine synthase (Fragment) OS=Anopheles
gambiae GN=AGAP010807 PE=3 SV=4
Length = 485
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 160/442 (36%), Positives = 225/442 (50%), Gaps = 75/442 (16%)
Query: 17 RVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRKSEEKIEKMTGYNTRFM 76
R+K+LEA N +L S + +K L E G K K + + F
Sbjct: 29 RIKQLEAHNTQLKSIV--------QKNLQSRDETTNGKAK-------KKHRPFDFAKCF- 72
Query: 77 SHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLVGDKKESQYSRCGR 136
KR++ L+ Y G + GFA++ T+E +F AL K+ L+ ++ S Y+RCGR
Sbjct: 73 ----KRHILLRFYYLGWDYQGFAAQEDSIETIEHHMFAALKKV-CLIESRETSNYNRCGR 127
Query: 137 TDKGVSSVGQVIALYLRSN----LKISGANTGSSGEIVEEQHEGEIDYVRVLNRVLPNDI 192
TDKGVS+ QVI+L +RS L++ N + E+DY +LNRVLP +I
Sbjct: 128 TDKGVSAFHQVISLDVRSKFAPELQLDANNLTN-----------ELDYCAMLNRVLPEEI 176
Query: 193 RILGWCPA--PVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMDA 250
R L W P P + ARF C SR Y+YFF + LNI AME + L+G HDFRN CKMD
Sbjct: 177 RCLAWMPMVNPA-YSARFDCRSRTYRYFFPRGDLNITAMEESARYLVGAHDFRNLCKMDV 235
Query: 251 TN-VHNYRRHITMFEIFPT--DVRYGGN--QLWVIKIRGSAFLWHQVRCMVAVLFLVGKG 305
N V ++ R I I P+ D G+ + ++++G AFLWHQVRC++AVL LVG+G
Sbjct: 236 GNGVVSFVRSIDAISIKPSQRDSERDGSSYDMMYLELQGKAFLWHQVRCIMAVLLLVGQG 295
Query: 306 LESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEF--------EDIKFMCSSDAG--- 354
E P+V+ LLD + P KPQY M+S+VPL L C+F E+ SD
Sbjct: 296 REKPSVVKDLLDVEQNPCKPQYSMASDVPLNLYDCQFNEKSGESNEEESMGGESDLSDWI 355
Query: 355 ---EALRIHLVNECQTFQLQAAV-----------FH---EALLNCVPLLHDQSLPPSRGT 397
E LR +++ Q F ++ +V H E P + DQS+ ++G
Sbjct: 356 YKEEDLR-RTISDLQGFWMKHSVKTTMVREMLKTLHGILEDRFAGAPPIRDQSVLLTQGV 414
Query: 398 TKKKASYVPLMSRPTEPSYEER 419
K+ Y PL+ R S E R
Sbjct: 415 RSKE--YCPLLQRQRCESLENR 434
>K0KSL0_WICCF (tr|K0KSL0) tRNA pseudouridine synthase OS=Wickerhamomyces ciferrii
(strain F-60-10 / ATCC 14091 / CBS 111 / JCM 3599 / NBRC
0793 / NRRL Y-1031) GN=BN7_4611 PE=3 SV=1
Length = 412
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 147/399 (36%), Positives = 215/399 (53%), Gaps = 38/399 (9%)
Query: 35 SHIHEMEKKLHVSGEKNTGSIKGNRKSEEKIEKMTGYNTRFMSHHSKRYVALKVMYFGKR 94
S I E+E E+N IK ++K ++K + F HH+ R++ALK Y G
Sbjct: 21 SRILELETP---KNEQNGTIIKRDQKPQKKSKPFD-----FSKHHT-RFIALKFSYLGWN 71
Query: 95 FYGFA--SEAQMEPTVESEIFKALAKIRLLVG-DKKESQYSRCGRTDKGVSSVGQVIALY 151
+ G A E PTVE I +AL K +L+ + +SRCGRTDKGVS++ QVI+L
Sbjct: 72 YNGLAIQKEPTPLPTVEGTIIEALNKCKLIPSLNPGNFNFSRCGRTDKGVSALNQVISLK 131
Query: 152 LRSNLKISGANTGSSGEIVEEQHEGEIDYVRVLNRVLPNDIRI--LGWCPAPVDFHARFS 209
+RSNL ++ E DY+ +LN +LP+DI+I + P P F ARFS
Sbjct: 132 VRSNLT-------PEEQLDPNLDSKEFDYINILNGILPSDIKIHEISLRP-PQGFDARFS 183
Query: 210 CLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMDAT-NVHNYRRHITMFEIFPT 268
C SR YKY F ++GL+I M+ A G HDFRNFCK+D + + NY R I +I
Sbjct: 184 CTSRHYKYLFHQQGLDIELMQKAAKLYEGSHDFRNFCKIDGSKQISNYERTILKSQILDL 243
Query: 269 DVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLESPNVIDMLLDTNKTPRKPQYI 328
GN L+ + GSAFLWHQVR MVA+LFLVG+ LESP ++ L++ +TP +P +
Sbjct: 244 -----GNGLYCFDLEGSAFLWHQVRNMVAILFLVGQKLESPGIVTQLMNIQETPTRPLFD 298
Query: 329 MSSEVPLVLQSCEFEDIKFMCSSDAGEALRIHLVNECQTFQL----QAAVF-HEALLNCV 383
M S++PL+L C+F +++++ ++ + + Q +L Q A F +E +N
Sbjct: 299 MGSDIPLILYDCKFPEMEWVKANKCAKYEKTLTSVYSQWIELNMKTQVAKFMYEKFVNDD 358
Query: 384 PLLHDQSLPPSR-----GTTKKKASYVPLMSRPTEPSYE 417
+ + + +R G K YVPL R S+E
Sbjct: 359 DIFQNSNERRTRINLGDGKGKIVGEYVPLFKRDRMESFE 397
>H2AQ38_KAZAF (tr|H2AQ38) tRNA pseudouridine synthase OS=Kazachstania africana
(strain ATCC 22294 / BCRC 22015 / CBS 2517 / CECT 1963 /
NBRC 1671 / NRRL Y-8276) GN=KAFR0B01890 PE=3 SV=1
Length = 436
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 125/275 (45%), Positives = 171/275 (62%), Gaps = 21/275 (7%)
Query: 77 SHHSKRYVALKVMYFGKRFYGFASEAQME--PTVESEIFKALAKIRLLVG-DKKESQYSR 133
S++S R++ALK Y G + G A + ++ PTVE I +A+ K +L+ +E +SR
Sbjct: 81 SNYSTRFIALKFAYLGWNYNGLAIQKEVTKLPTVEGTILEAMNKCKLIPSMVPQEYNFSR 140
Query: 134 CGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHE-GEIDYVRVLNRVLPNDI 192
CGRTDKGVS++ QVI+L +RSNL + E ++ Q++ EI YV +LN++LP DI
Sbjct: 141 CGRTDKGVSAMNQVISLRVRSNL--------TEEEQMDPQNDVREIQYVTILNQLLPADI 192
Query: 193 RILGWC--PAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMDA 250
R+ P P F ARFSC +R YKY F GLN+ ME A GEHDFRNFCK+D
Sbjct: 193 RVFAVSLRPPP-GFDARFSCKARHYKYIFHNSGLNLTKMEEAAKFFEGEHDFRNFCKIDG 251
Query: 251 T-NVHNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLESP 309
+ + NY+R I +I N + + GSAFLWHQVRCM+A LFLVG+ LE P
Sbjct: 252 SKQITNYKRTILSAKILKI-----SNNFYCFDLIGSAFLWHQVRCMMANLFLVGQELEEP 306
Query: 310 NVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFED 344
+I ++D KTP+KP Y M+S+VPL+L C+F D
Sbjct: 307 QLIPDMMDVVKTPQKPIYEMASDVPLLLYDCKFPD 341
>M2Y7P4_GALSU (tr|M2Y7P4) tRNA pseudouridine synthase OS=Galdieria sulphuraria
GN=Gasu_08410 PE=3 SV=1
Length = 433
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 138/375 (36%), Positives = 199/375 (53%), Gaps = 45/375 (12%)
Query: 79 HSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLVGDKKESQYSRCGRTD 138
H KR +AL++ Y G RF GFAS+ + TVE +F+AL K +L + +++ S YSR RTD
Sbjct: 64 HGKRKIALRICYLGWRFDGFASQPHSDNTVEEHLFRALLKTKL-IENREGSCYSRAARTD 122
Query: 139 KGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDYVRVLNRVLPNDIRILGWC 198
KGVS++ V++L +RS++ S+GE+ E+DY R+LN VLP+ I I GW
Sbjct: 123 KGVSAIENVVSLTVRSHII-----PPSNGEV-------ELDYPRILNGVLPSGIWITGWT 170
Query: 199 PAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMDATNVHNYRR 258
DFHARFS R Y Y+F E LN+ AM+ A +GEHDFRNFCK D T V ++RR
Sbjct: 171 SVDPDFHARFSASYRVYHYYFRPEHLNLSAMQRAAQFFVGEHDFRNFCKADVTQVQSFRR 230
Query: 259 HITMFEIFPTDVRYGGNQLWVIK-----------------------IRGSAFLWHQVRCM 295
I +I + + W + ++G AFLWHQ+RCM
Sbjct: 231 VIYSCDIKIVSMTHKSRFEWHLPPESATCSLQSSKNTSSICLAKLVVKGQAFLWHQIRCM 290
Query: 296 VAVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAGE 355
++LF+VG+GLE +++ +L KP Y M+SE+PLVL F + F SS A
Sbjct: 291 ASILFMVGEGLEKEDIVKDMLQHECFGAKPLYRMASEIPLVLSQIGFGGLSFQISSKAYT 350
Query: 356 ALRIHLVNECQTFQLQAAVFHEALLNCV-------PLLHDQSLPPSRG-TTKKKASYVPL 407
+ L C + +AA+ + LLN + LH + P S +++ + L
Sbjct: 351 DVEKFLQEACTSLLCKAAILKD-LLNSLHEHFIRGENLHQLTEPTSAYLLDREQGPHRLL 409
Query: 408 MSRPTEPSYEERRAK 422
SR E S + RR +
Sbjct: 410 ESRKREASIDARRER 424
>F8P967_SERL9 (tr|F8P967) tRNA pseudouridine synthase OS=Serpula lacrymans var.
lacrymans (strain S7.9) GN=SERLADRAFT_363593 PE=3 SV=1
Length = 444
Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 135/366 (36%), Positives = 199/366 (54%), Gaps = 44/366 (12%)
Query: 76 MSHHSKRYVALKVMYFGKRFYG--FASEAQMEPTVESEIFKALAKIRLLVGDK--KESQY 131
+ H +R +A+K Y G + G F + PTVE +F A AK RL+ DK +
Sbjct: 52 FTSHPRRKIAVKFCYSGWEYNGLAFQNGPTPLPTVEEVLFNAFAKTRLVDPDKGLDGCGW 111
Query: 132 SRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDYVRVLNRVLPND 191
RCGRTD+GVS+ GQV++L++RS L + + + E+ YV +LNRVLP
Sbjct: 112 ERCGRTDRGVSAAGQVVSLWVRSAL--------DENRLKDAETRSELRYVSILNRVLPPT 163
Query: 192 IRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMD-A 250
IR+L W P F ARF+C SR YKYFF + L++ M+ A +L+GEHDFRN CK+D A
Sbjct: 164 IRVLAWSPISSTFSARFNCQSRHYKYFFSPQELDLGLMQQAADRLVGEHDFRNLCKLDPA 223
Query: 251 TNVHNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLESPN 310
+ N+ R + + +I P + L V +RG+AFL+HQVR ++A+LFLVG GLE P+
Sbjct: 224 KQITNFNRRVLLAKISPI-----SDHLCVFDLRGTAFLYHQVRHIMAILFLVGTGLEHPS 278
Query: 311 VIDMLLDTNK---------------TPRKPQYIMSSEVPLVLQSCEF--EDIKFMCSSDA 353
++ LL+ K RKP+Y M+ +PL+L C + D+++ D
Sbjct: 279 IVSTLLNVGKETNSPSELDNSPLEIVDRKPEYQMADGLPLMLWDCAYSDSDVQWQTDIDT 338
Query: 354 GE-ALRIHLVNECQTFQLQAAVF-HEAL-LNCVPLLHDQ------SLPPSRGTTKKKASY 404
GE A + + + Q F H L L+ +P+L S+P GT K+ A Y
Sbjct: 339 GENAHFLSAAAQLHSHPPQRFPFSHTGLALSTIPVLLKSKERPVLSVPLGGGTFKRTAKY 398
Query: 405 VPLMSR 410
+P++ R
Sbjct: 399 IPVLLR 404
>G9NWQ3_HYPAI (tr|G9NWQ3) Putative uncharacterized protein OS=Hypocrea
atroviridis (strain ATCC 20476 / IMI 206040)
GN=TRIATDRAFT_284330 PE=3 SV=1
Length = 655
Score = 224 bits (572), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 141/355 (39%), Positives = 182/355 (51%), Gaps = 91/355 (25%)
Query: 77 SHHSKRYVALKVMYFGKRFYGFASEAQ-MEPTVESEIFKALAKIRLLVGDKKE------S 129
S +S R++ALK+ Y GK F GF +AQ +P +E E++ AL K L+ + +
Sbjct: 151 SKYSTRFIALKLAYLGKNFGGFEFQAQGNQPAIEEELWNALTKACLIFPEDENVVNFDCC 210
Query: 130 QYSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEI----VEEQHEG--------- 176
+YS+CGRTD+GVS+ GQVI L +RSN + E EE HE
Sbjct: 211 EYSKCGRTDRGVSAFGQVIGLRVRSNRPLPKKQPEMDEEADLAKEEEGHEAAGDGQTKKQ 270
Query: 177 ---------------EIDYVRVLNRVLPNDIRILGWCPA-PVDFHARFSCLSREYKYFF- 219
EI Y VLNR+LP +IRIL WCPA P DF ARFSC R+Y+YFF
Sbjct: 271 SKPKAPPKPFDDIRDEIPYPHVLNRLLPKEIRILAWCPAPPPDFSARFSCRERQYRYFFT 330
Query: 220 ----------------WKEG-----------LNIPAMESAGIKLIGEHDFRNFCKMD-AT 251
K+G L+I AM A + GEHDFRN CK+D A
Sbjct: 331 QPAFAPMPSLIEDSAAAKKGDQDEKLMKPGWLDIEAMRDAAKRYEGEHDFRNLCKVDPAK 390
Query: 252 NVHNYRRHITMFEIFPTDVRYGGNQLWVIK------------------------IRGSAF 287
+ N++R MFE +V+ + L +K +RGSAF
Sbjct: 391 QITNFKRR--MFESDIVEVKDAASALPYLKAAGFAPENLDLSSGEAFPKVYYFHVRGSAF 448
Query: 288 LWHQVRCMVAVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEF 342
LWHQ+R MVAVLFLVG+GLE P++I LLD K PR+P Y+M+ EVPLVL C F
Sbjct: 449 LWHQIRHMVAVLFLVGQGLEKPSLISELLDIEKNPRRPNYVMADEVPLVLWDCIF 503
>C5DBF6_LACTC (tr|C5DBF6) tRNA pseudouridine synthase OS=Lachancea thermotolerans
(strain ATCC 56472 / CBS 6340 / NRRL Y-8284)
GN=KLTH0A02222g PE=3 SV=1
Length = 443
Score = 224 bits (572), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 118/277 (42%), Positives = 174/277 (62%), Gaps = 19/277 (6%)
Query: 77 SHHSKRYVALKVMYFGKRFYGFA--SEAQMEPTVESEIFKALAKIRLLVG-DKKESQYSR 133
S + R+VA K Y G + G A E PTVE I +A+ +L+ ++ +SR
Sbjct: 82 SKYDTRFVAFKFAYLGWNYNGLAIQKEPTPLPTVEGTILEAMNACKLVPSMVPQDYNFSR 141
Query: 134 CGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEG-EIDYVRVLNRVLPNDI 192
CGRTDKGVS++ QVI+L++RSNL + E +E+++G EIDY+ +LN++LP+DI
Sbjct: 142 CGRTDKGVSAMNQVISLHVRSNL--------TREEQQDEENDGREIDYIHILNQLLPDDI 193
Query: 193 RILGWC-PAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMDAT 251
RI C P +F ARFSC R Y+Y F K+GL+I ME A GEHDFRNFCK+D +
Sbjct: 194 RISAVCLRPPTNFDARFSCQYRHYRYLFHKDGLDIKKMEEAARMYEGEHDFRNFCKLDGS 253
Query: 252 -NVHNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLESPN 310
++NY+R+I I ++ + + GSAFLWHQVRCM+A LFL+G+GLE
Sbjct: 254 KQINNYKRNIERSRIISL-----SEDIYCLDLIGSAFLWHQVRCMMANLFLIGQGLEDTT 308
Query: 311 VIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKF 347
++ L+D + +KP Y M+S++PL+L C+F ++++
Sbjct: 309 LLKDLMDVARVKQKPIYDMASDIPLILFDCKFPEMEW 345
>F7VPN4_SORMK (tr|F7VPN4) WGS project CABT00000000 data, contig 2.3 OS=Sordaria
macrospora (strain ATCC MYA-333 / DSM 997 / K(L3346) /
K-hell) GN=SMAC_02466 PE=3 SV=1
Length = 666
Score = 224 bits (572), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 136/340 (40%), Positives = 184/340 (54%), Gaps = 77/340 (22%)
Query: 79 HSKRYVALKVMYFGKRFYGF--ASEAQMEPTVESEIFKALAKIRLLVGDKKES------Q 130
+S R +ALK Y GK + GF S A+M P++E E++KAL K L+ ++ + +
Sbjct: 139 YSTRLIALKFAYLGKNYNGFEYQSSAKM-PSIEEELWKALVKSCLVFPERPDEVDFGPWE 197
Query: 131 YSRCGRTDKGVSSVGQVIALYLRSNLKI-------SGANTGSSGEIVEEQHE-------- 175
YS+CGRTD+GVS+ GQVI + +RSN + +G N G + E Q +
Sbjct: 198 YSKCGRTDRGVSAFGQVIGIRVRSNKPLPKEEPEQTGGNGGDDVVMTEPQQQEAEKATDV 257
Query: 176 -----------GEIDYVRVLNRVLPNDIRILGWCPA-PVDFHARFSCLSREYKYFFW--- 220
E+ Y RVLNR+LP DIRI+ W PA P +F ARFSC R+Y+YFF
Sbjct: 258 EHQKPEWDPIADEVPYCRVLNRLLPPDIRIMAWAPALPPNFSARFSCRERQYRYFFTQPA 317
Query: 221 ----------------KEG-LNIPAMESAGIKLIGEHDFRNFCKMD-ATNVHNYRRHITM 262
K+G L+I M A G HDFRNFCK+D + N+ R I
Sbjct: 318 FAPMPSSLEPLAKKQEKQGWLDIGKMREAAKMFEGVHDFRNFCKIDPGKQITNFSRRIFE 377
Query: 263 FEIFP-----TDVRY----------GGNQ-----LWVIKIRGSAFLWHQVRCMVAVLFLV 302
+I +D+ Y GG++ ++ +RGSAFLWHQ+R MVAVLFLV
Sbjct: 378 SDIVEVKDVESDLPYLGLPEFQPLAGGSEGSHPKVYYFHVRGSAFLWHQIRHMVAVLFLV 437
Query: 303 GKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEF 342
G+GLE P+++ LLD K PRKP Y+M+ EVPLVL C F
Sbjct: 438 GQGLEPPSIVQQLLDVEKNPRKPNYVMADEVPLVLWDCIF 477
>Q750F7_ASHGO (tr|Q750F7) tRNA pseudouridine synthase OS=Ashbya gossypii (strain
ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
GN=AGOS_AGL003W PE=3 SV=2
Length = 432
Score = 224 bits (571), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 121/286 (42%), Positives = 175/286 (61%), Gaps = 19/286 (6%)
Query: 76 MSHHSKRYVALKVMYFGKRFYGFASEAQMEP--TVESEIFKALAKIRLLVG-DKKESQYS 132
S ++ R++ALK Y G + G A + P TVE I +A+ K R++ ++ ++S
Sbjct: 76 FSKYNTRFIALKFAYLGWNYNGLAIQKDPTPLPTVEGTILEAMNKCRMVPSMVPQDYKFS 135
Query: 133 RCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEG-EIDYVRVLNRVLPND 191
RCGRTDKGVS++ QVI+L +RSNL + E + ++ EI Y+ +LN++LP+D
Sbjct: 136 RCGRTDKGVSAMNQVISLRVRSNL--------TPQEQEDPANDAREIPYIHILNQLLPDD 187
Query: 192 IRILGWC-PAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMDA 250
IRI C P F ARFSC R YKY F K GL++ ME A GEHDFRNFCK+D
Sbjct: 188 IRISAICLRPPKGFDARFSCKYRHYKYLFNKSGLDLSKMEEAARLYEGEHDFRNFCKLDG 247
Query: 251 T-NVHNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLESP 309
+ + N++R I +I D ++ + GSAFLWHQVRCM+A LF+VG+GLE
Sbjct: 248 SKQITNFKRTILSAKILHVD-----GDMYCFDLLGSAFLWHQVRCMMANLFIVGQGLEPL 302
Query: 310 NVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAGE 355
+I+ LLD K P+KP Y M+S++PL+L C+F+D+++ + E
Sbjct: 303 TLINNLLDVEKNPQKPVYDMASDIPLILYDCKFDDMEWQLPDLSAE 348
>M9N5B5_ASHGS (tr|M9N5B5) FAGL003Wp OS=Ashbya gossypii FDAG1 GN=FAGOS_FAGL003W
PE=4 SV=1
Length = 432
Score = 224 bits (571), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 121/286 (42%), Positives = 175/286 (61%), Gaps = 19/286 (6%)
Query: 76 MSHHSKRYVALKVMYFGKRFYGFASEAQMEP--TVESEIFKALAKIRLLVG-DKKESQYS 132
S ++ R++ALK Y G + G A + P TVE I +A+ K R++ ++ ++S
Sbjct: 76 FSKYNTRFIALKFAYLGWNYNGLAIQKDPTPLPTVEGTILEAMNKCRMVPSMVPQDYKFS 135
Query: 133 RCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEG-EIDYVRVLNRVLPND 191
RCGRTDKGVS++ QVI+L +RSNL + E + ++ EI Y+ +LN++LP+D
Sbjct: 136 RCGRTDKGVSAMNQVISLRVRSNL--------TPQEQEDPANDAREIPYIHILNQLLPDD 187
Query: 192 IRILGWC-PAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMDA 250
IRI C P F ARFSC R YKY F K GL++ ME A GEHDFRNFCK+D
Sbjct: 188 IRISAICLRPPKGFDARFSCKYRHYKYLFNKSGLDLSKMEEAARLYEGEHDFRNFCKLDG 247
Query: 251 T-NVHNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLESP 309
+ + N++R I +I D ++ + GSAFLWHQVRCM+A LF+VG+GLE
Sbjct: 248 SKQITNFKRTILSAKILHVD-----GDMYCFDLLGSAFLWHQVRCMMANLFIVGQGLEPL 302
Query: 310 NVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAGE 355
+I+ LLD K P+KP Y M+S++PL+L C+F+D+++ + E
Sbjct: 303 TLINNLLDVEKNPQKPVYDMASDIPLILYDCKFDDMEWQLPDLSAE 348
>N4W3B1_COLOR (tr|N4W3B1) Pseudouridylate synthase 3 OS=Colletotrichum orbiculare
(strain 104-T / ATCC 96160 / CBS 514.97 / LARS 414 /
MAFF 240422) GN=Cob_04053 PE=4 SV=1
Length = 519
Score = 224 bits (570), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 135/355 (38%), Positives = 194/355 (54%), Gaps = 75/355 (21%)
Query: 77 SHHSKRYVALKVMYFGKRFYGFA-SEAQMEPTVESEIFKALAKIRLLVGDKKE------S 129
S +S R++ALK+ Y GKR+ GF + + +PT+E ++++AL K L+ + +
Sbjct: 50 SRYSTRFIALKLAYLGKRYGGFEFAPSAAKPTIEGKLWEALTKACLIFPEDPDFVNFDCC 109
Query: 130 QYSRCGRTDKGVSSVGQVIALYLRSNLKIS------GANTGSSGEIVEEQ---------- 173
+YS+CGRTD+GVS+ GQVI L +RS+ + G ++ V E+
Sbjct: 110 EYSKCGRTDRGVSAFGQVIGLRVRSSRPLPKPAVAEGEPDAAAAAAVAEKTDEEIAAEEK 169
Query: 174 ---------HEGEIDYVRVLNRVLPNDIRILGWCPAPV-DFHARFSCLSREYKYFF---- 219
+ EIDY+ LNR+LP+DIRIL WCP+P DF ARFSC REY+YFF
Sbjct: 170 KKKAAEEWTDDQEIDYINTLNRLLPDDIRILAWCPSPPPDFSARFSCEEREYRYFFTQPA 229
Query: 220 -----------WKEG-LNIPAMESAGIKLIGEHDFRNFCKMDAT-NVHNYRRHITMFEIF 266
+EG L+I AM A + +G HDFRNFCK+D + + N+ RH MFE
Sbjct: 230 FAPTEGSSGPGLQEGYLDIEAMNDAAQRFVGNHDFRNFCKVDGSKQITNFERH--MFEAK 287
Query: 267 PTDVRYGGNQL----------------------WVIKIRGSAFLWHQVRCMVAVLFLVGK 304
+V G L + IRG+AFLWHQ+R +V++LFLVG+
Sbjct: 288 VVEVADVGTALPYLGADAASGAGGGGGGVLPKVYSFNIRGTAFLWHQIRHIVSILFLVGQ 347
Query: 305 GLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFE-DIKFMCSSDAGEALR 358
LE+P+++ LLD K+P+KP Y ++ E PLVL +C F D S+ + ALR
Sbjct: 348 RLETPDLVTRLLDVEKSPQKPNYDLAHETPLVLWNCVFPGDAASRTSATSAAALR 402
>Q6BSM4_DEBHA (tr|Q6BSM4) tRNA pseudouridine synthase OS=Debaryomyces hansenii
(strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 /
IGC 2968) GN=DEHA2D07722g PE=3 SV=2
Length = 444
Score = 224 bits (570), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 133/340 (39%), Positives = 196/340 (57%), Gaps = 32/340 (9%)
Query: 14 LQARVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRKSEEKIEKMTGYNT 73
L +++ELE+ N + D+ E N IK + K+ +++ K
Sbjct: 31 LIEKIRELESRNENETAMTNDN------------SENN--DIKPDEKNNKRLSKNKPKEF 76
Query: 74 RFMSHHSKRYVALKVMYFGKRFYG--FASEAQMEPTVESEIFKALAKIRLLVG-DKKESQ 130
F S ++KR++AL+ Y G + G F E PTVE EI KALAK +L+ D
Sbjct: 77 DF-SKYNKRFIALRFAYVGWDYNGLNFQYEPTPLPTVEEEILKALAKSKLITQVDPACCN 135
Query: 131 YSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDYVRVLNRVLPN 190
+SRCGRTDKGVS++ QVI+L +RSNL I SS + + E+ Y+ +LN +LP
Sbjct: 136 FSRCGRTDKGVSAMNQVISLDVRSNL-IPEDQLSSSND------DKELPYLAILNSLLPT 188
Query: 191 DIRILGWC-PAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMD 249
DIRI C P F ARFSC R Y+Y F K L++ M+ + G DFRNFCK+D
Sbjct: 189 DIRITAVCLRPPPKFDARFSCSYRHYRYIFRKYDLDLDLMQEGAKRYEGVRDFRNFCKID 248
Query: 250 AT-NVHNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLES 308
+ + NY+R E+ ++ + + ++ ++GSAFLWHQVRCM+AVLF VG+ LE+
Sbjct: 249 GSKQITNYKR-----EVLSANIIHLRDDFYIFDLKGSAFLWHQVRCMMAVLFAVGQKLEA 303
Query: 309 PNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFM 348
P++ID L+D K P KP + M+++VPLVL C F +++++
Sbjct: 304 PSIIDDLVDVEKFPGKPSFEMANDVPLVLYDCVFPEMEWL 343
>M3D8Q6_9PEZI (tr|M3D8Q6) Pseudouridine synthase OS=Mycosphaerella populorum
SO2202 GN=SEPMUDRAFT_124666 PE=3 SV=1
Length = 546
Score = 223 bits (569), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 138/374 (36%), Positives = 198/374 (52%), Gaps = 82/374 (21%)
Query: 77 SHHSKRYVALKVMYFGKRFYGF---ASEAQMEPTVESEIFKALAKIRLLVGDKKESQ--- 130
S + R +ALK Y G + GF A+ PT+E E+++A+ K++L+ ++K Q
Sbjct: 54 SRYHTRLIALKFAYLGANYNGFEHHANNTTPLPTIEEELWRAMRKVKLIFPEQKPGQSEE 113
Query: 131 --------YSRCGRTDKGVSSVGQVIALYLRS-----------NLKISGANTGSSGEIVE 171
YS+CGRTD+GVS+ GQVI + +RS N +GA + + I+
Sbjct: 114 DVCWDGIEYSKCGRTDRGVSAFGQVIGVRVRSARIKEKKQVLPNEVSAGAESQGADTIMP 173
Query: 172 EQHEG------------------EIDYVRVLNRVLPNDIRILGWCPAPVD-FHARFSCLS 212
+ + E+ Y++++NRVLP DIRIL WCP P D F ARF+C
Sbjct: 174 DVSQDANAAAAPPAEKEFDPIRDELPYIQLINRVLPPDIRILAWCPEPGDGFSARFNCKE 233
Query: 213 REYKYFF-------------WKEG------LNIPAMESAGIKLIGEHDFRNFCKMDAT-N 252
R Y+YFF W+ G L+I AM A K G HDFRN CK+D +
Sbjct: 234 RRYRYFFTNPAYAPLPGGKPWENGKPGEGFLDIEAMNVAAKKYEGLHDFRNLCKVDPSKQ 293
Query: 253 VHNYRR---HITMFEIFPTDVRYGGN----QLWVIKIRGSAFLWHQVRCMVAVLFLVGKG 305
+ N+ R H + E+ P N +L+ ++RGSAFLWHQVR +VA+LFLVG+G
Sbjct: 294 ITNWERRIFHAGIHEVGPHSSAAVSNGDTPKLYYFEVRGSAFLWHQVRHLVAILFLVGQG 353
Query: 306 LESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAGEALRIHLVNEC 365
E P+V+D LL+ KTP KP Y M+S+VPLVL C F ++ + +SD H N+
Sbjct: 354 HEQPSVVDDLLNVQKTPGKPHYEMASDVPLVLWDCIFPSVEELSTSD-------HAGND- 405
Query: 366 QTFQLQAAVFHEAL 379
Q A +H+A+
Sbjct: 406 ---QSMAGGYHDAM 416
>G3AP53_SPAPN (tr|G3AP53) tRNA pseudouridine synthase OS=Spathaspora passalidarum
(strain NRRL Y-27907 / 11-Y1) GN=SPAPADRAFT_61166 PE=3
SV=1
Length = 411
Score = 223 bits (569), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 138/363 (38%), Positives = 200/363 (55%), Gaps = 28/363 (7%)
Query: 77 SHHSKRYVALKVMYFGKRFYGFASEAQMEP--TVESEIFKALAKIRLLVGDKKES-QYSR 133
S + R+VA++ Y G + G A + + P TVE I AL K +L+ + ++SR
Sbjct: 40 SKYHTRFVAIRFAYLGWNYNGLAYQKEETPLPTVEGTILDALHKAKLIKEPTVDCCKFSR 99
Query: 134 CGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDYVRVLNRVLPNDIR 193
CGRTDKGVS++ QVI+L +RS+L SS ++ E+ Y +LN +LP DIR
Sbjct: 100 CGRTDKGVSAMNQVISLNVRSSL-TPEEQADSSNDV------KEVKYATILNSLLPPDIR 152
Query: 194 I--LGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMDAT 251
I + P P F ARFSC SR YKY F K+ L+I AM A G HDFRNFCK+D +
Sbjct: 153 ITAISLRPPP-KFDARFSCESRHYKYLFLKQQLDIDAMNQAAQLYEGTHDFRNFCKVDGS 211
Query: 252 -NVHNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLESPN 310
+ Y R I +I P D G ++ ++GSAFLWHQVRCMVAVLFLVG+GLE +
Sbjct: 212 KQISRYERDIYSAKIMPVD---GIPDMYCFDLKGSAFLWHQVRCMVAVLFLVGQGLEPVS 268
Query: 311 VIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAGEALRIH--------LV 362
++ L+D +K P KPQ+ M+++ PLVL C F +++++ SD + LV
Sbjct: 269 IVSDLMDVDKFPTKPQFEMANDAPLVLYDCTFPEMEWLSLSDMQALYQSKWSWTSFQGLV 328
Query: 363 NECQTFQLQAAVFHEALLN---CVPLLHDQSLPPSRGTTKKKASYVPLMSRPTEPSYEER 419
+ Q A + + +L+ + + Q + G + ASY+P++ R +E
Sbjct: 329 YDHQIKAQMAQIMDQIVLSDKAAIQTHNKQMMNTGDGAGRAFASYIPIVDRERGEHFEVA 388
Query: 420 RAK 422
AK
Sbjct: 389 NAK 391
>C5L1W2_PERM5 (tr|C5L1W2) tRNA pseudouridine synthase OS=Perkinsus marinus
(strain ATCC 50983 / TXsc) GN=Pmar_PMAR024215 PE=3 SV=1
Length = 387
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 148/381 (38%), Positives = 192/381 (50%), Gaps = 50/381 (13%)
Query: 56 KGNRKSEEKIEKMTGYNTRFM----------SHHSKRYVALKVMYFGK-RFYGFA---SE 101
K RK+ I+ T RF+ + +ALKV R+ G A E
Sbjct: 16 KKRRKAPRGIDWSTAKTGRFVMKFAYVGTRQASFPSTTMALKVCVEAVLRYAGVAWQNQE 75
Query: 102 AQMEPTVESEIFKALAKIRLLVGDKKESQYSRCGRTDKGVSSVGQVIALYLRSNLKISGA 161
A TVE+E+FK L K L+ + +SRCGRTDKGV + G L LR LK G
Sbjct: 76 AFGVNTVENELFKGLVKT-CLIESRMSCDFSRCGRTDKGVHARGNYATLRLR--LKPDGT 132
Query: 162 NTGSSGEIVEEQHEGEIDYVRVLNRVLPNDIRILGWCPAPVD-FHARFSCLSREYKYFFW 220
E Y++++NRVLP+DIR+L C P D F ARFSC SR YKYFF
Sbjct: 133 ---------------EFPYIQMINRVLPDDIRVLRICSVPSDDFDARFSCKSRTYKYFFP 177
Query: 221 KEGLNIPAMESAGIKLIGEHDFRNFCKMDATNVHNYRRHITMFEIFPTDVRYGGNQLWVI 280
GL++ M A +L+G+HD+RNFC+MD N+ R I FEI DV +
Sbjct: 178 STGLDLEVMAEAAQRLVGQHDYRNFCRMDVEQTTNFERTIYSFEICNGDV------ISHA 231
Query: 281 KIRGSAFLWHQVRCMVAVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSC 340
I GSAFLWHQVRCM+ VL L+GKGLE P VIDML D NKTP KP Y ++ LVL C
Sbjct: 232 VITGSAFLWHQVRCMMEVLMLIGKGLEKPEVIDMLFDINKTPGKPSYDLADGAGLVLFDC 291
Query: 341 EFEDIKFMCSSDAGEALRIHLVNECQTFQLQAAVFHEALLNCVPLLHDQSLPPSRGTTKK 400
+++ F + + E Q AV L C+ + P ++ T +
Sbjct: 292 KYDAEWFDQTVEDDEEAVAEFSRAAIAAQRDLAV-----LQCL------AGPIAKTTEVQ 340
Query: 401 KASYVPLMSRPTEPSYEERRA 421
YVP+M R P+ +ER A
Sbjct: 341 SRKYVPIMQRAKAPTLDERIA 361
>E3QGP1_COLGM (tr|E3QGP1) tRNA pseudouridine synthase A OS=Colletotrichum
graminicola (strain M1.001 / M2 / FGSC 10212)
GN=GLRG_05173 PE=3 SV=1
Length = 570
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 139/361 (38%), Positives = 190/361 (52%), Gaps = 81/361 (22%)
Query: 77 SHHSKRYVALKVMYFGKRFYGFASEAQME-PTVESEIFKALAKIRLLVGDKKE------S 129
S +S R++ALK+ Y GKR+ GF A PT+E E++ AL K L+ + +
Sbjct: 87 SRYSTRFIALKLAYLGKRYGGFEYAASASLPTIEGELWNALTKACLIFPEDPDVVNFDCC 146
Query: 130 QYSRCGRTDKGVSSVGQVIALYLRSNLKI-------------SGANTGSSGEIVE----- 171
+YS+CGRTD+GVS+ GQVI L +RSN + +T +G E
Sbjct: 147 EYSKCGRTDRGVSAFGQVIGLRVRSNKPLPKKPEEEAAAAEAEEGDTAMAGTAEEEEKKK 206
Query: 172 ----------------EQHEGEIDYVRVLNRVLPNDIRILGWCPAPV-DFHARFSCLSRE 214
+ EI YV+VLNR+LP+DIRI WCP+P DF ARFSC R+
Sbjct: 207 RQEQTQKQKKKPEKEWDDINDEIQYVKVLNRLLPDDIRITAWCPSPPPDFSARFSCEERQ 266
Query: 215 YKYFF------------------WKEG-LNIPAMESAGIKLIGEHDFRNFCKMDAT-NVH 254
Y+YFF +EG L+I AM A + +G+HDFRNFCK+D + +
Sbjct: 267 YRYFFTQPAFTPTAATSDGTPSGLREGYLDIEAMNEAAQRFVGDHDFRNFCKVDGSKQIT 326
Query: 255 NYRRHITMFEIFPTDVRYGGNQL----------------WVIKIRGSAFLWHQVRCMVAV 298
N+ R MFE +VR G+ L + IRG+AFLWHQ+R MV +
Sbjct: 327 NFERR--MFEASVGEVRDVGSALPYLGCSAADGGQLPKVYSFNIRGTAFLWHQIRHMVTI 384
Query: 299 LFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFE-DIKFMCSSDAGEAL 357
LFLVG+ LE P ++ LLD K+PRKP Y ++ E PLVL +C F D + ++ A AL
Sbjct: 385 LFLVGQRLERPELVTELLDVEKSPRKPNYDLAHETPLVLWNCVFPGDPESRTTAGAEGAL 444
Query: 358 R 358
R
Sbjct: 445 R 445
>G0W644_NAUDC (tr|G0W644) tRNA pseudouridine synthase OS=Naumovozyma dairenensis
(strain ATCC 10597 / BCRC 20456 / CBS 421 / NBRC 0211 /
NRRL Y-12639) GN=NDAI0B02200 PE=3 SV=1
Length = 439
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 123/281 (43%), Positives = 176/281 (62%), Gaps = 17/281 (6%)
Query: 76 MSHHSKRYVALKVMYFGKRFYGFA--SEAQMEPTVESEIFKALAKIRLLVG-DKKESQYS 132
S H+ R++ALK Y G + G A EA PTVE +I +A+ +L+ +E +S
Sbjct: 76 FSKHNSRFIALKFAYLGWNYNGLAMQKEATPLPTVEGKIIEAMYTSKLVPSMVPQEYSFS 135
Query: 133 RCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDYVRVLNRVLPNDI 192
RCGRTDKGVS++ QVI+L +RSNL + E EI YV +LN++LP+DI
Sbjct: 136 RCGRTDKGVSAMSQVISLKVRSNL-------TDEEQKRPENDPREIRYVHILNQLLPDDI 188
Query: 193 RILGWCPAPVD-FHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMDAT 251
R+ C P + F ARFSC SR YKY F +GL+I M+ A K G+HDFRNFCK+D +
Sbjct: 189 RVSAVCLRPPEGFDARFSCDSRHYKYLFEADGLDISKMKEASSKYEGDHDFRNFCKLDGS 248
Query: 252 -NVHNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLESPN 310
+ N+RR I +I + GN ++ + G AFLWHQVRCM+A L LVG+GLE +
Sbjct: 249 KQITNHRRTIISAKILHVE----GN-IYCFDLVGRAFLWHQVRCMMANLLLVGQGLEEVS 303
Query: 311 VIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSS 351
+I+ +LD KTP+KP Y M+ ++PL+L C+F +++++ S+
Sbjct: 304 LIEDMLDIEKTPQKPIYDMADDLPLLLYDCKFPEMEWIESN 344
>M1VU00_CLAPU (tr|M1VU00) Related to pseudouridine synthase 3 OS=Claviceps
purpurea 20.1 GN=CPUR_00376 PE=3 SV=1
Length = 619
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 153/444 (34%), Positives = 211/444 (47%), Gaps = 128/444 (28%)
Query: 17 RVKELEAE------NAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRKSEEKIEKMTG 70
R++E+E E + + A + H+ + L G + + KG + + K++
Sbjct: 18 RLREVEGELKRRTEAPQPVVGAASTSTHD--ETLSEDGAPDNKTPKGAQAKKRKMDP--- 72
Query: 71 YNTRFMSHHSKRYVALKVMYFGKRFYGFASEAQ-MEPTVESEIFKALAKIRLLVGDKKE- 128
S +S R++ALK+ Y GK + GF +A +P++E E++ AL K L+ + +
Sbjct: 73 ------SRYSTRFIALKLAYLGKNYGGFEFQAMGNQPSIEEELWNALTKACLIFPEDERV 126
Query: 129 -----SQYSRCGRTDKGVSSVGQVIALYLRSNL---------------KISGANT----- 163
+YS+CGRTD+GVS+ GQVI L +RSN ISG T
Sbjct: 127 VQFECCEYSKCGRTDRGVSAFGQVIGLRVRSNRPLPKKQVEVGGPVSEDISGEATHVEKK 186
Query: 164 GSSGEIVEEQHEG------------------------EIDYVRVLNRVLPNDIRILGWCP 199
SS EE G E+ Y R+LNR+LP+DIRIL WCP
Sbjct: 187 ASSTAGAEEVAGGKETEAGEEQEEEEEEGVPFDDLKDELCYPRILNRLLPDDIRILAWCP 246
Query: 200 AP-VDFHARFSCLSREYKYFFWKEG----------------------------------L 224
+P DF ARFSC R+Y+YFF + L
Sbjct: 247 SPPADFSARFSCRERQYRYFFTQPAFAPNPAEAAGPPSSSSSSSSSSSSSSSSALQPGWL 306
Query: 225 NIPAMESAGIKLIGEHDFRNFCKMD-ATNVHNYRRHITMFEIFPTDVRYGGN-------- 275
+I AM +A + GEHDFRNFCK+D A + N+RR I FE VR
Sbjct: 307 DIEAMRNAAKRFEGEHDFRNFCKVDPAKQISNFRRRI--FESDIVQVRDASGVLPFLQNQ 364
Query: 276 --------------QLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLESPNVIDMLLDTNKT 321
Q++ +RGSAFLWHQ+R MVAVLFLVG+ LE P V+ LLDT +T
Sbjct: 365 QSPCGSSVEEGPYPQVYYFHVRGSAFLWHQIRHMVAVLFLVGQRLEDPAVVSELLDTQRT 424
Query: 322 PRKPQYIMSSEVPLVLQSCEFEDI 345
P +P Y+M+ EVPLVL C F D+
Sbjct: 425 PCRPSYVMAEEVPLVLWDCIFPDL 448
>K7ILU7_NASVI (tr|K7ILU7) tRNA pseudouridine synthase OS=Nasonia vitripennis PE=3
SV=1
Length = 421
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 145/417 (34%), Positives = 214/417 (51%), Gaps = 39/417 (9%)
Query: 19 KELEA-ENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRKSEEKIEKMTGYNTRF-M 76
+ELE + +L+ ++ H ++ K + EK G+ +E+K EK++ N +F
Sbjct: 14 EELEQLDKTELIDRILQLEAHNLQLKQII--EKRLGT------AEKKKEKVSSTNKKFDF 65
Query: 77 SHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLVGDKKESQYSRCGR 136
+ KR++ LK Y G + GFA++ T+E +F AL K L+ ++ S Y RCGR
Sbjct: 66 AKCHKRHIFLKFYYLGWDYQGFAAQEDTTSTIEYYLFAALTK-SCLIESRETSNYHRCGR 124
Query: 137 TDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDYVRVLNRVLPNDIRILG 196
TDKGVS+ QVI+L +RS L+ + S E+ Y ++LNR+LP +IR
Sbjct: 125 TDKGVSAFSQVISLDIRSRLEPEKQDNLSD----------ELHYCKMLNRLLPKNIRCFS 174
Query: 197 WCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMDATN-VHN 255
W PA + ARF C R YKYFF + LNI AM+ A +G HDFRN CKMD N V N
Sbjct: 175 WSPAHPEMSARFDCKFRSYKYFFPRGNLNIEAMDKAAKLTVGSHDFRNLCKMDVANGVVN 234
Query: 256 YRRHITMFEIF------PTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLESP 309
+ R+I ++ P + G + + I+ +AFLWHQ+RC++ +L LVG+ E P
Sbjct: 235 FFRNIVNAQVTCIKREDPEKI--SGYDMCELSIKSNAFLWHQIRCIMGILLLVGREQEKP 292
Query: 310 NVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAGEALRIHLVNECQTFQ 369
VI LLD K PRKPQY + +PL L CE++ + + + + L E
Sbjct: 293 EVITDLLDVEKCPRKPQYNLGHYIPLNLFYCEYDGTNWYTDKEELQRVIKDLQEEWTYAA 352
Query: 370 LQAAVFHEALLNCVPLLHD-------QSLPPSRGTTKKKASYVPLMSRPTEPSYEER 419
++ ++ L + D QS +G K Y PLM R T S E+R
Sbjct: 353 IKCSMTRNMLKDLEAFFDDETSHLNQQSDCLLQGVEAK--VYKPLMQRDTCESLEDR 407
>G8BS98_TETPH (tr|G8BS98) tRNA pseudouridine synthase OS=Tetrapisispora phaffii
(strain ATCC 24235 / CBS 4417 / NBRC 1672 / NRRL Y-8282
/ UCD 70-5) GN=TPHA0D00760 PE=3 SV=1
Length = 434
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 130/317 (41%), Positives = 186/317 (58%), Gaps = 26/317 (8%)
Query: 75 FMSHHSKRYVALKVMYFGKRFYGFASEAQMEP--TVESEIFKALAKIRLLVG-DKKESQY 131
F +H KR+VALK Y G + G A + P T+E + +A+ K + + + K+ ++
Sbjct: 81 FEKYH-KRHVALKFCYLGWDYNGLALQKDKTPLPTIEGILLEAMKKCKFIPSMNPKDFKF 139
Query: 132 SRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHE-GEIDYVRVLNRVLPN 190
SRCGRTDKGVS++ Q+I+L +RS L E V+ + EI+Y +LN++LP
Sbjct: 140 SRCGRTDKGVSALNQIISLDMRSEL--------PPAEQVDANFDHKEINYTAILNQILPP 191
Query: 191 DIRILGWC-PAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMD 249
IRI C P DF ARF+C+SR YKYFF + L+I M A GE+DFRNFCK+D
Sbjct: 192 AIRITAVCLNPPKDFDARFNCISRHYKYFFKLDNLDITLMREAAKHFEGENDFRNFCKLD 251
Query: 250 AT-NVHNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLES 308
+ + NY R IF D+ ++ I SAFLWHQVR MVA+LFLVG+ LE
Sbjct: 252 GSKQIKNYER-----TIFSFDISKVKEDIYCFDIIASAFLWHQVRYMVAILFLVGQKLEP 306
Query: 309 PNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSS-DAGEALRIHLVNECQT 367
+++ LLD NK PRKP Y M+++ PLVL C + D+K++ S+ + +A++ E
Sbjct: 307 SSIVKDLLDVNKYPRKPIYDMAADFPLVLYDCNYSDMKWIKSNINDYKAIKFRKSLEAID 366
Query: 368 FQLQ-----AAVFHEAL 379
+QLQ A++F E L
Sbjct: 367 YQLQIKATIASIFLEEL 383
>K8EJB4_9CHLO (tr|K8EJB4) tRNA pseudouridine synthase OS=Bathycoccus prasinos
GN=Bathy10g02510 PE=3 SV=1
Length = 473
Score = 221 bits (563), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 148/422 (35%), Positives = 209/422 (49%), Gaps = 72/422 (17%)
Query: 76 MSHHSKRYVALKVMYFGKRFYGFASEAQMEP---------------TVESEIFKALAKIR 120
S + R +AL++ Y G +GF+S+ ++ T+E +F+AL K R
Sbjct: 37 FSKYKTRKIALELAYCGANHFGFSSQGCLQASNAETTNAKNNSHIRTIEGALFEALKKCR 96
Query: 121 LLVGDKK-----ESQYSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHE 175
L+ K+ YSRCGRTD+GVSS+G V++L +R G + + ++
Sbjct: 97 LVDPSKEIFGEPSVDYSRCGRTDRGVSSIGNVVSLNVRCKGVGGGGGGEDEEDDEDGENG 156
Query: 176 GEIDYVRVLNRVLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWK-------------- 221
EIDYV LNR LP+D+R L W P F +RF+C SR Y+Y F +
Sbjct: 157 EEIDYVGNLNRALPDDVRALCWYAVPDGFSSRFNCTSRRYEYHFTRVVRQNLAPPPRGGE 216
Query: 222 --------EGLNIPAMESAGIKLIGEHDFRNFCKMDATNVHNYRRHITMFEIFPTDV-RY 272
E L++ M A KL+G HDFRNFCKM+ + +Y RHI I + R
Sbjct: 217 EAGKCEPEEILDVGRMREACEKLVGTHDFRNFCKMNVKDCRDYTRHIKECRIEKKNTERT 276
Query: 273 GGNQL----WVIKIRGSAFLWHQVRCMVAVLFLVGKGLESPNVIDMLLDTNKTPRKPQYI 328
G L WV+ I GS+FLWH VRC+ AVLF VG ++P++ID LLD KTPRKP Y
Sbjct: 277 TGALLRETDWVLIIEGSSFLWHMVRCIAAVLFQVGLRADAPDIIDDLLDLTKTPRKPLYA 336
Query: 329 MSSEVPLVLQSCEFEDI-----KFMCSSDAGEALRIHLVNECQTFQLQAAVFHEALLNC- 382
M+ E LVL CE++D K S +A + L +H + + +L+A+++ E
Sbjct: 337 MAPEHSLVLVGCEYDDSVINPGKRRVSEEARQGLEMHALAAARMHRLKASLWEEIGGKAH 396
Query: 383 VPLLHDQSLPP-----SRGTTK--------------KKASYVPLMSRPTEPSYEERRAKL 423
P+ D P SR T+ K V L R TE +Y+ER A L
Sbjct: 397 SPVKEDADTPSHNVKRSRELTRGLLSSTYYGTAAGEPKGEPVSLKKRSTEKTYDERIADL 456
Query: 424 NS 425
N+
Sbjct: 457 NA 458
>E9J363_SOLIN (tr|E9J363) tRNA pseudouridine synthase (Fragment) OS=Solenopsis
invicta GN=SINV_14818 PE=3 SV=1
Length = 444
Score = 221 bits (562), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 120/311 (38%), Positives = 178/311 (57%), Gaps = 21/311 (6%)
Query: 42 KKLHVSGEKNTGSIKGNRKSEEKIEKMTGYNTRFMSHHSKRYVALKVMYFGKRFYGFASE 101
++L VS KNT ++ K+ K + S KR++ LK Y G ++GF +
Sbjct: 57 EQLKVSITKNTDIKSKKEETSWKVRKTFDF-----SRCHKRHILLKFYYLGWDYHGFTVQ 111
Query: 102 AQMEPTVESEIFKALAKIRLLVGDKKESQYSRCGRTDKGVSSVGQVIALYLRSNLKISGA 161
T+E +F AL K + ++ + Y RCGRTDKGVSS QVI+L +RS K++
Sbjct: 112 EDNCNTIEHHLFAALLK-SCCIESRESANYHRCGRTDKGVSSFSQVISLDIRS--KLAPE 168
Query: 162 NTGSSGEIVEEQHEGEIDYVRVLNRVLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWK 221
+ G+ E+ Y ++LNR+LP +IR + WCP +F ARF C R YKYFF +
Sbjct: 169 DQGNLS--------NELPYCKMLNRLLPTNIRCVAWCPVASNFSARFDCKYRRYKYFFPR 220
Query: 222 EGLNIPAMESAGIKLIGEHDFRNFCKMDATN-VHNYRRHITMFEIFPTD----VRYGGNQ 276
L+I AM A ++G+HDFRN CKMD N + N++R + ++ + + G
Sbjct: 221 GNLDIDAMNKAAKYVVGDHDFRNICKMDVANGIINFKRTVIDAKVSFVNEQSMEKSTGYD 280
Query: 277 LWVIKIRGSAFLWHQVRCMVAVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLV 336
+ ++I AFLWHQ+RC++ +L LVG+ E P VI LLDT P+KPQY M+ +VPL
Sbjct: 281 MCELEITSQAFLWHQIRCLMGILLLVGQRKEEPEVILKLLDTETCPQKPQYNMAHQVPLN 340
Query: 337 LQSCEFEDIKF 347
L C++E+IK+
Sbjct: 341 LWHCDYENIKW 351
>E5SDA6_TRISP (tr|E5SDA6) tRNA pseudouridine synthase OS=Trichinella spiralis
GN=Tsp_01719 PE=3 SV=1
Length = 471
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 137/399 (34%), Positives = 200/399 (50%), Gaps = 57/399 (14%)
Query: 76 MSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLVGDKKESQYSRCG 135
S + +R++AL V Y G GF ++ + TVES+IFKAL + +L + + + YSRCG
Sbjct: 31 FSRYCRRHIALMVAYLGWDLDGFCAQNNSQNTVESKIFKALIETKL-IQSLETANYSRCG 89
Query: 136 RTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEG---------EIDYVRVLNR 186
RTDK VS+ QV++L +RSN G E E+DY ++LN
Sbjct: 90 RTDKTVSAFSQVLSLDVRSNQTTGVGVFEPDGYCPNEPKPTSRKTTPKSEELDYAKILNS 149
Query: 187 VLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPA------------------ 228
VLP +IR+L W P F+AR++C SR+YKYFF K LN+
Sbjct: 150 VLPQEIRVLAWAPVERTFNARYNCTSRQYKYFFPKGALNLKVSTVVDFLHFSAIVALFSN 209
Query: 229 ------------MESAGIKLIGEHDFRNFCKMDATNVHNYRRHITMFEIFPTDVRYGG-- 274
ME A +LIGEHDFRNFCK+D + T+F++ T V GG
Sbjct: 210 FRRGTICVYFQLMEQASKRLIGEHDFRNFCKIDMSKNEIQSCVRTVFDVQFTKVNAGGLN 269
Query: 275 -NQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEV 333
L I +AFLWHQ+RC+++VLF +G+G E P+VI+ LL+T P KPQY M
Sbjct: 270 SRTLCCFTIVANAFLWHQIRCIMSVLFAIGEGKEQPDVIEWLLNTELCPAKPQYSMVVGW 329
Query: 334 PLVLQSCEFEDIKFMCSSDAGEALRIHLVNECQ----TFQLQAAVFHEALLNCVPLLHDQ 389
PLVL C+++++++ E + + ++ Q F ++ + + + + L+ +
Sbjct: 330 PLVLYGCQYDNLEW----HWKEGIIMECISNLQRTLVNFAIKVEIIENMMNSLLSLMPNN 385
Query: 390 SLPPSRGTTK------KKASYVPLMSRPTEPSYEERRAK 422
S TT SY PL R S EE+ AK
Sbjct: 386 STTADLNTTSILHPELLSHSYRPLKGRSVGKSLEEKIAK 424
>G2RHX6_THITE (tr|G2RHX6) Putative uncharacterized protein OS=Thielavia
terrestris (strain ATCC 38088 / NRRL 8126)
GN=THITE_75432 PE=3 SV=1
Length = 614
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 134/350 (38%), Positives = 181/350 (51%), Gaps = 83/350 (23%)
Query: 77 SHHSKRYVALKVMYFGKRFYGFASE-AQMEPTVESEIFKALAKIRLLVGDKKES------ 129
S ++ R VALK+ Y G+R+ GF + PTVE E+++AL + L+ ++ +
Sbjct: 95 SKYATRLVALKLAYLGRRYGGFEHQPGSAVPTVEEELWRALVRTCLIWPEQPDKVDFGPW 154
Query: 130 QYSRCGRTDKGVSSVGQVIALYLRSNLKISGANT--------------------GSSGEI 169
+YS+CGRTD+GVS+ GQVIA+ LRSN + A G +GE+
Sbjct: 155 EYSKCGRTDRGVSAFGQVIAIRLRSNRPLDAAGKKGGDDKGKEGEAGDVEMGERGEAGEM 214
Query: 170 VEEQHEG----------EIDYVRVLNRVLPNDIRILGWCPA-PVDFHARFSCLSREYKYF 218
G EI+Y RVLNR+LP DIR+L W P P F ARFSC R+Y+YF
Sbjct: 215 AGAADGGAKPAWDPIADEINYPRVLNRLLPPDIRVLAWAPTLPPGFSARFSCWERQYRYF 274
Query: 219 F------------------WKEG-LNIPAMESAGIKLIGEHDFRNFCKMD-ATNVHNYRR 258
F +EG L+I AM A G HDFRNFCK+D A + ++R
Sbjct: 275 FTQPAFTPLPASLDPDGTRGREGWLDIDAMRRAAKLFEGVHDFRNFCKVDGAKQITTFKR 334
Query: 259 HITMFEIFPTDVRYGGNQL-----------------------WVIKIRGSAFLWHQVRCM 295
+ FE +V G+ L + +RGSAFLWHQ+R M
Sbjct: 335 RV--FEADVVEVEGTGSALPYLALPDFRPEKLAEQGGTHPKVYYFHVRGSAFLWHQIRHM 392
Query: 296 VAVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDI 345
VA+LFLVG+GLE P++I LLD K PRKP Y +++E PLVL C F +
Sbjct: 393 VAILFLVGQGLEKPSIITDLLDVEKNPRKPNYTLAAEAPLVLWDCIFPKV 442
>C1C1W1_9MAXI (tr|C1C1W1) tRNA pseudouridine synthase OS=Caligus clemensi GN=PUS3
PE=2 SV=1
Length = 423
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 118/273 (43%), Positives = 165/273 (60%), Gaps = 11/273 (4%)
Query: 79 HSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLVGDKKESQYSRCGRTD 138
+ +R V L++ YFG ++GFA + T+E +F AL++ L+ ++ S Y RCGRTD
Sbjct: 57 YKQRKVLLQICYFGWSYHGFAVQEDSPMTIEGHLFNALSRT-CLIRSRETSNYHRCGRTD 115
Query: 139 KGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEG-----EIDYVRVLNRVLPNDIR 193
KGVS+ QV+++ LRSNL + G E EIDY ++LN LP DI+
Sbjct: 116 KGVSAFRQVVSIELRSNL-LEGPGVFDYPECRAHSRPNPTTNEEIDYCKILNSNLPPDIQ 174
Query: 194 ILGWCP-APVDFHARFSCLSREYKYFF-WKEGLNIPAMESAGIKLIGEHDFRNFCKMDAT 251
++ W P DF ARF C REYKY F ++ ++ AG KL+G HDFRNFCKMD +
Sbjct: 175 VIAWAPLTNRDFSARFDCKIREYKYIFPLGAARDLSRIQEAGAKLLGSHDFRNFCKMDVS 234
Query: 252 N-VHNYRRHITMFEIFPTDVRYGGNQLWV-IKIRGSAFLWHQVRCMVAVLFLVGKGLESP 309
N V Y R + + P + + V +KI G+AFLWHQ+RC+V VLF +G+GLE P
Sbjct: 235 NGVLTYIRRMLEVSVSPLESSSTDSYSLVELKIVGNAFLWHQIRCIVTVLFHIGQGLEEP 294
Query: 310 NVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEF 342
++ID LLD K PR+PQY ++SE+PL L C +
Sbjct: 295 SLIDELLDVEKHPRRPQYGLASEIPLNLFDCSY 327
>G3JA62_CORMM (tr|G3JA62) Pseudouridylate synthase 3 OS=Cordyceps militaris
(strain CM01) GN=CCM_02503 PE=3 SV=1
Length = 547
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 146/396 (36%), Positives = 204/396 (51%), Gaps = 82/396 (20%)
Query: 14 LQARVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRKSEEKIEKMTGYNT 73
L RV++LEAE + + H G+ S G + + + KM
Sbjct: 14 LVERVRQLEAELQRRPAAPEPEPTH---------GDPAGASTPGTTRPKVR-RKMDP--- 60
Query: 74 RFMSHHSKRYVALKVMYFGKRFYGFASEAQ-MEPTVESEIFKALAKIRLLVGDKKE---- 128
S +S R++ALK+ Y GK + GF +A+ +P++E E++ AL K L+ + ++
Sbjct: 61 ---SKYSTRFIALKLAYLGKNYGGFEFQAEGHQPSIEEELWIALTKACLIFPENEKIVDF 117
Query: 129 --SQYSRCGRTDKGVSSVGQVIALYLRSNLKISGANT----GSSGEIVE----------- 171
+YS+CGRTDKGVS+ GQVI++ +RSN + G++G+ E
Sbjct: 118 NICEYSKCGRTDKGVSAFGQVISIRVRSNRPLPKEPKPTVEGAAGQDTEQQEPEEEEKPF 177
Query: 172 EQHEGEIDYVRVLNRVLPNDIRILGWCPAPV-DFHARFSCLSREYKYFFWKE-------- 222
+ EI Y VLNR+LP DIRIL WCP+P +F ARFSC R+Y+YFF +
Sbjct: 178 DPIADEIPYPMVLNRLLPPDIRILAWCPSPPPNFSARFSCRERQYRYFFTQPVFSPEPSY 237
Query: 223 ----------GLNIPAMESAGIKLIGEHDFRNFCKMD-ATNVHNYRRHITMFEIFPTDVR 271
L+I AM A + G+ DFRN CK+D A + N+ R T+FE +VR
Sbjct: 238 GTGTGTTHPGWLDIDAMRDAAKRFEGDQDFRNLCKIDPAKLITNWSR--TIFESDIVEVR 295
Query: 272 YGGNQL----------------------WVIKIRGSAFLWHQVRCMVAVLFLVGKGLESP 309
+ L + +RGSAFLWHQ+R MVAVLFLVG LE P
Sbjct: 296 DAASALPYVTAAGFAPSALVGTSSFPKVYYFHVRGSAFLWHQIRHMVAVLFLVGLRLEKP 355
Query: 310 NVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDI 345
+++ LLD NK PRKP Y M+ EVPLVL C F D+
Sbjct: 356 SIVSELLDVNKYPRKPGYTMADEVPLVLWDCLFPDL 391
>J7R588_KAZNA (tr|J7R588) tRNA pseudouridine synthase OS=Kazachstania naganishii
(strain ATCC MYA-139 / BCRC 22969 / CBS 8797 / CCRC
22969 / KCTC 17520 / NBRC 10181 / NCYC 3082)
GN=KNAG0D02400 PE=3 SV=1
Length = 418
Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 125/328 (38%), Positives = 183/328 (55%), Gaps = 35/328 (10%)
Query: 39 EMEKKLHVSGEKNTGSIKGNRKSEEKIEKMTGYNTRF--------MSHHSKRYVALKVMY 90
E+E + + G +T + RKSEE+ + S H R++AL+ Y
Sbjct: 45 ELESEKTIDGTADTNTNNKRRKSEEEPASKKKKRNKKKNSVKPFDFSRHHTRFIALRFAY 104
Query: 91 FGKRFYGFA--SEAQMEPTVESEIFKALAKIRLLVG-DKKESQYSRCGRTDKGVSSVGQV 147
G ++ G A E PTVE I + + K +L+ + + +SRCGRTDKGVS++ QV
Sbjct: 105 LGWKYNGLALQKEPTALPTVEETILEVMNKCKLVPSMEPLDYNFSRCGRTDKGVSAMNQV 164
Query: 148 IALYLRSNLKISGANTGSSGEIVEEQHEG-----EIDYVRVLNRVLPNDIRILGWC-PAP 201
I+L +RSNL EEQ + E+ YV ++N +LP+DIR+ C P
Sbjct: 165 ISLTVRSNLS------------PEEQRDPANDHQELQYVHMINHLLPDDIRVSAVCLRPP 212
Query: 202 VDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMDAT-NVHNYRRHI 260
DF AR SC R Y+Y F E L++ M A GEHDFRNFCK+D + + NYRR I
Sbjct: 213 ADFDARHSCKHRHYRYLFKAEQLDLEKMREAAKLYEGEHDFRNFCKIDGSKQITNYRRRI 272
Query: 261 TMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLESPNVIDMLLDTNK 320
+I + + + G+AFLWHQVRCM+A LFLVG+GLE P+++ L++ +
Sbjct: 273 ISGDIIRVN-----EDFYCFDLVGTAFLWHQVRCMMACLFLVGQGLEKPSIVTDLMNIDL 327
Query: 321 TPRKPQYIMSSEVPLVLQSCEFEDIKFM 348
P+KP Y M+S+VPL+L C+F D++++
Sbjct: 328 MPQKPLYDMASDVPLLLYDCKFPDMEWI 355
>B0XGH8_CULQU (tr|B0XGH8) tRNA pseudouridine synthase OS=Culex quinquefasciatus
GN=CpipJ_CPIJ017918 PE=3 SV=1
Length = 470
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 116/300 (38%), Positives = 177/300 (59%), Gaps = 19/300 (6%)
Query: 49 EKNTGSIKGNRKSEEKIEKMTGYNTRFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTV 108
+K TG+ +S K ++ + S KR++ L+ Y G F G+A++ T+
Sbjct: 46 QKATGTKSDQPRSSNKNQRKFDF-----SKCHKRHILLRFFYLGWDFQGYATQEDSANTI 100
Query: 109 ESEIFKALAKIRLLVGDKKESQYSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGE 168
E +F AL ++ L+ ++ S Y RCGRTDKGVS+ QV++L +RS +
Sbjct: 101 EHHLFNALTRV-CLIESRESSNYHRCGRTDKGVSAFHQVVSLDVRSKFP-------PESQ 152
Query: 169 IVEEQHEGEIDYVRVLNRVLPNDIRILGWCP-APVDFHARFSCLSREYKYFFWKEGLNIP 227
+ E + E++Y ++LNRVLP +IR + W P A ++ ARF C SR Y+YFF + L++
Sbjct: 153 LAPESLQNELNYCQLLNRVLPAEIRCVAWMPTANPNYSARFDCRSRTYRYFFPRGSLDVD 212
Query: 228 AMESAGIKLIGEHDFRNFCKMDATN-VHNYRRHITMFEIFPTDVRYGGN---QLWVIKIR 283
AM L+G HDFRN CKMD N V ++R++ + + ++ GG+ + ++R
Sbjct: 213 AMRKGCEFLVGSHDFRNLCKMDVGNGVVTFQRNV-HYAVIRDSLKDGGDSSYDMLYFELR 271
Query: 284 GSAFLWHQVRCMVAVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFE 343
G AFLWHQVRC++A+L LVG+G E P VI LLD K PRKPQY ++++VPL L C ++
Sbjct: 272 GKAFLWHQVRCIMAILILVGQGREDPTVIRELLDVEKNPRKPQYSLANDVPLNLYECLYK 331
>D3PJK9_9MAXI (tr|D3PJK9) tRNA pseudouridine synthase OS=Lepeophtheirus salmonis
GN=PUS3 PE=2 SV=1
Length = 420
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 147/409 (35%), Positives = 219/409 (53%), Gaps = 34/409 (8%)
Query: 37 IHEMEKKLHVSGEKNTGSIKGNRKSEEKIEKMTGYNTRF-MSHHSKRYVALKVMYFGKRF 95
I +EK HV +N + KG+ + ++KI + F S + KR V ++ YFG +
Sbjct: 15 IRRLEK--HVLQLRNVIAKKGDSR-DKKIVRHKKKGREFDHSLYKKRKVLFQITYFGWNY 71
Query: 96 YGFASEAQMEPTVESEIFKALAKIRLLVGDKKESQYSRCGRTDKGVSSVGQVIALYLRSN 155
+GF ++ T+E+ +FKAL L+ ++ S Y RCGRTDKGVS+ QVI++ +R+N
Sbjct: 72 HGFTTQEDSCMTIEAHLFKALLTT-CLIQSRETSNYHRCGRTDKGVSAFRQVISIDVRTN 130
Query: 156 LK--ISGANTGSSGEIVEEQHEGEIDYVRVLNRVLPNDIRILGWCPAP-VDFHARFSCLS 212
LK I + EIDY++++N LP DI+++ W PA + ARF C
Sbjct: 131 LKEGIGVFDYPDCKADSRPDMPHEIDYIKIINSNLPPDIQLIAWTPAQNRELSARFDCKK 190
Query: 213 REYKYFFWKEGL-NIPAMESAGIKLIGEHDFRNFCKMDATN-VHNYRR---HITMFEIFP 267
R YKYFF + ++ M AG KL+G HDFRNFCKMD +N V Y R +++ + P
Sbjct: 191 RTYKYFFPLGSIKSLSKMNEAGAKLVGSHDFRNFCKMDVSNGVLTYIRRMVNVSTSVLEP 250
Query: 268 TDVRYGGN-QLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLESPNVIDMLLDTNKTPRKPQ 326
+ + L V+K+ G+AFLWHQ+RC+V VLF +G+G E P +ID LLD K P +PQ
Sbjct: 251 SKEKESSPYDLCVLKVEGNAFLWHQIRCIVTVLFHIGQGREEPELIDELLDIEKNPCRPQ 310
Query: 327 YIMSSEVPLVLQSCEFEDIKFMCSSDAGEALRIHLVNECQTFQLQAAVFHEALLNCVPLL 386
Y ++SE+PL L C +E + + + E+LR + Q + A+ E + C+ L
Sbjct: 311 YGLASEIPLNLFDCSYEGLTWDYNL---ESLRT-CIKGFQELWAEHAIKAEMIKACLDEL 366
Query: 387 HDQS-----------LPPSRGTTKKKASYVPLMSRPTEPSYEERRAKLN 424
LP S K+ Y P + PS EE+ +LN
Sbjct: 367 ESHFDERVIEQASALLPHS-----KQRIYTPFLEMLKCPSLEEKIQRLN 410
>N1PWA4_MYCPJ (tr|N1PWA4) Uncharacterized protein OS=Dothistroma septosporum
NZE10 GN=DOTSEDRAFT_22677 PE=4 SV=1
Length = 667
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 142/388 (36%), Positives = 201/388 (51%), Gaps = 65/388 (16%)
Query: 25 NAKLLSQLADSHIH-EMEKKLHVSGEKNTGSIKGNRKSEEKIEKMTGYNTRFMSHHSKRY 83
NA L+ ++ D I + HV + + R+ +K K G++ S ++ R
Sbjct: 12 NADLIRRVTDLEIALRKQNAEHVHATLSHSASSAPRRKPKKPSK--GFDP---SKYNTRL 66
Query: 84 VALKVMYFGKRFYGF---ASEAQMEPTVESEIFKALAKIRLLVGDKKESQ---------- 130
+ALK Y G + GF A+ PTVE E++KAL K RL+ K Q
Sbjct: 67 IALKFAYLGGNYNGFEHHANNITPLPTVEEELWKALKKTRLIFPTLKPGQSEEGVSWEGC 126
Query: 131 -YSRCGRTDKGVSSVGQVIALYLRSN------LKISGANTGSSGEIVEEQHE-------- 175
YS+CGRTD+GVS+ GQVI + +RS + + + S EQ+E
Sbjct: 127 DYSKCGRTDRGVSAFGQVIGIRVRSARPQVQPARAAAEDGADSPMPNAEQNEEPAIEFNS 186
Query: 176 --GEIDYVRVLNRVLPNDIRILGWCP-APVDFHARFSCLSREYKYFFWK----------- 221
E+ Y++++NRVLP+DIRIL WCP P +F ARF+C R Y+YFF
Sbjct: 187 VCDELPYIQLINRVLPSDIRILAWCPHTPENFSARFNCKERRYRYFFTNPAFIPLPGSKG 246
Query: 222 --------EG-LNIPAMESAGIKLIGEHDFRNFCKMDAT-NVHNYRRHITMFEIFPTDVR 271
EG LN+ AME A G HDFRNFCK+D + + N+ R I + +
Sbjct: 247 VAEDGSPDEGCLNVVAMEEAAKMYEGLHDFRNFCKVDPSKQISNFERRIFHAGVHEVNAG 306
Query: 272 YGGN-------QLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLESPNVIDMLLDTNKTPRK 324
G +L+ ++RGSAFLWHQVR +VA+LFLVG+G E P+++ LLD +KTP +
Sbjct: 307 VKGESAASTSPKLYYFEVRGSAFLWHQVRHLVAILFLVGQGHEKPSIVQDLLDIHKTPAR 366
Query: 325 PQYIMSSEVPLVLQSCEFEDIKFMCSSD 352
P Y M+S+ PLVL C F D + + D
Sbjct: 367 PAYEMASDAPLVLWECIFPDPAKLDAGD 394
>B4NSM9_DROSI (tr|B4NSM9) tRNA pseudouridine synthase OS=Drosophila simulans
GN=Dsim\GD15210 PE=3 SV=1
Length = 498
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 140/372 (37%), Positives = 200/372 (53%), Gaps = 26/372 (6%)
Query: 3 TQLSDVDHIATLQARVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRKSE 62
TQ +D + L+A +L K LS+ D H E + G + G + K+
Sbjct: 27 TQTELIDKVVQLEAYNFQLRNLLQKKLSE-HDKHDKEYSG---LFGNEADGKVSQVAKTS 82
Query: 63 EKIEKMTGYNTRFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLL 122
K++K+ ++ + S H KR+V LK+ YFG + GFA + T+ES +F+AL + L
Sbjct: 83 NKVQKIRMFD--WSSAH-KRHVLLKITYFGWDYQGFACQEDSNDTIESNLFRALTRT-CL 138
Query: 123 VGDKKESQYSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDYVR 182
+ + S Y RCGRTDK VS+ QVI++ LRS ++ EIDY
Sbjct: 139 IESRATSNYHRCGRTDKEVSAFCQVISIDLRSK-------HPPESQLDPTSLSSEIDYCG 191
Query: 183 VLNRVLPNDIRILGWCP--APVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEH 240
+LNRVLP +I+ + W P +PV + ARF C+SR Y+Y+F K L+I AM A L+
Sbjct: 192 LLNRVLPKNIQCVAWMPLRSPV-YSARFDCVSRSYRYYFPKGDLDIAAMRKACDLLVRHA 250
Query: 241 DFRNFCKMDATN-VHNYRRHITMFEIFPTDVRY--GGNQLWVIKIRGSAFLWHQVRCMVA 297
DFRNFCKMD N V NY R++ + D + G ++ ++I+ +AFLWHQ+RC++A
Sbjct: 251 DFRNFCKMDVHNGVTNYMRNLQSARVEACDENHTNSGYDMYYLEIQANAFLWHQIRCIMA 310
Query: 298 VLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFED-----IKFMCSSD 352
VL LVG+ E P VI LLD P KPQY + +PL L C+F D + S D
Sbjct: 311 VLLLVGQKKEKPAVISDLLDVESNPCKPQYTPAIGLPLNLFRCDFRDHTTRSVNHSGSGD 370
Query: 353 AGEALRIHLVNE 364
A E + NE
Sbjct: 371 ANEEAMDTVANE 382
>K0T8R2_THAOC (tr|K0T8R2) Uncharacterized protein OS=Thalassiosira oceanica
GN=THAOC_09000 PE=4 SV=1
Length = 617
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 131/360 (36%), Positives = 174/360 (48%), Gaps = 96/360 (26%)
Query: 79 HSKRYVALKVMYFGKRFYGFASEAQMEP--TVESEIFKALAKIRLLVG------------ 124
H R+VALK Y G +F GFA E ++E +F AL K RLLV
Sbjct: 80 HRTRHVALKFSYDGSQFTGFAENVGTEGDNSIEKALFTALEKTRLLVSPEENGAFVLRKQ 139
Query: 125 -----DKKE------------SQYSRCGRTDKGVSSVGQVIALYLRSNLKISGA----NT 163
D+ E +QYSRCGRTDKGV + GQVIA+YL+S +S +
Sbjct: 140 SSHQEDESEEGHGNAISARTAAQYSRCGRTDKGVHAHGQVIAMYLKSAFPLSAKAAIMGS 199
Query: 164 GSSGEIVEEQHEG-------------------------------------EIDYVRVLNR 186
S E+ H+G E DY +VLN
Sbjct: 200 DDSRSQGEDLHDGSLPNNSLDKLECFVLPRRKKQGNAQVQLPAHELRTISEYDYAKVLNN 259
Query: 187 VLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFC 246
VLP+ IR++GWCP F ARFSC R Y+YFF + LN+ A+ +IG HDFRN C
Sbjct: 260 VLPSSIRVIGWCPVSPKFSARFSCSRRTYRYFFPRRDLNLDALAQGLKYMIGRHDFRNLC 319
Query: 247 KMDATNVHNYRRHITMFEIF-----------PTD--VRYGGNQLWV-----------IKI 282
KM+ V+N+ R IT ++ P D V+ G +L ++I
Sbjct: 320 KMNCEQVYNFERVITSGDVVSPQKKFTLTQDPADSTVQLGARKLESAAKESPHDICHVQI 379
Query: 283 RGSAFLWHQVRCMVAVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEF 342
G AFLWHQ+RC++++LFLVG+ LE P+++ LLD P KP Y M+SE LVL C+F
Sbjct: 380 EGQAFLWHQIRCIMSILFLVGRELERPSIVRDLLDVKANPAKPAYDMASETALVLHDCKF 439
>Q9W282_DROME (tr|Q9W282) tRNA pseudouridine synthase OS=Drosophila melanogaster
GN=CG3045 PE=2 SV=1
Length = 499
Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 139/364 (38%), Positives = 198/364 (54%), Gaps = 27/364 (7%)
Query: 3 TQLSDVDHIATLQARVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRKSE 62
TQ +D + L+A +L K LS+ D H E + G + G + K+
Sbjct: 27 TQTELIDKVIQLEAYNFQLRNLLQKKLSE-KDKHDKEYSGLI---GNEAEGKVSQVAKTS 82
Query: 63 EKIEKMTGYNTRFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLL 122
K++K+ ++ + S H KR+V LK+ YFG + GFA + T+ES +F+ALA+ L
Sbjct: 83 SKVQKIRKFD--WSSAH-KRHVLLKITYFGWDYQGFACQEDSNDTIESNLFRALART-CL 138
Query: 123 VGDKKESQYSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDYVR 182
+ + S Y RCGRTDK VS+ QVI++ LRS ++ EIDY
Sbjct: 139 IESRATSNYHRCGRTDKEVSAFCQVISIDLRSK-------HPPESQLDPTALSSEIDYCG 191
Query: 183 VLNRVLPNDIRILGWCP--APVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEH 240
+LNRVLP +I+ + W P +PV + ARF C+SR Y+Y+F K L+I AM A L+
Sbjct: 192 LLNRVLPKNIQCVAWMPLRSPV-YSARFDCVSRTYRYYFPKGDLDIAAMRKACDLLVRHA 250
Query: 241 DFRNFCKMDATN-VHNYRRHITMFEIFPTDVRY---GGNQLWVIKIRGSAFLWHQVRCMV 296
DFRNFCKMD N V NY R++ + D G ++ ++I+ +AFLWHQ+RC++
Sbjct: 251 DFRNFCKMDVHNGVTNYMRNLQSARVEACDQTNHTNSGYDMYYLEIQANAFLWHQIRCIM 310
Query: 297 AVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFED-----IKFMCSS 351
AVL LVG+ E+P VI LLD P KPQY + +PL L C+F D + S
Sbjct: 311 AVLLLVGQKKENPGVISDLLDVESNPCKPQYTPAIGLPLNLFRCDFRDHTTRSVNHPSSG 370
Query: 352 DAGE 355
DA E
Sbjct: 371 DADE 374
>B3NND9_DROER (tr|B3NND9) tRNA pseudouridine synthase OS=Drosophila erecta
GN=Dere\GG20714 PE=3 SV=1
Length = 497
Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 137/351 (39%), Positives = 195/351 (55%), Gaps = 24/351 (6%)
Query: 17 RVKELEAENAKL--LSQLADSHIHEMEKKLHVSGEKNTGSIKGNRKSEEKIEKMTGYNTR 74
+V +LEA N +L L Q + +E+ V G + + KS K++K ++
Sbjct: 34 KVVQLEAYNFQLRNLLQKKLTEQDNLEEYSAVFGNEAKDGVTQVAKSSSKVQKQRKFD-- 91
Query: 75 FMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLVGDKKESQYSRC 134
+ S H KR+V LK+ YFG + GFA + T+ES +F+AL++ L+ + S Y RC
Sbjct: 92 WSSAH-KRHVLLKITYFGWDYQGFACQEDSNDTIESNLFRALSRT-CLIDSRANSNYHRC 149
Query: 135 GRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDYVRVLNRVLPNDIRI 194
GRTDK VS+ QVI++ LRS ++ EIDY +LNRVLP +I+
Sbjct: 150 GRTDKEVSAFCQVISIDLRSK-------HSPEFQLDPTALSTEIDYCGLLNRVLPKNIQC 202
Query: 195 LGWCP--APVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMDATN 252
+ W P +PV + ARF C+SR Y+Y+F K L+I AM A L DFRNFCKMD N
Sbjct: 203 VAWMPLRSPV-YSARFDCVSRSYRYYFPKGDLDIGAMSQACDLLERHADFRNFCKMDVHN 261
Query: 253 -VHNYRRHITMFEIFPTDVRY--GGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLESP 309
V NY R++ + D + G ++ ++I+ +AFLWHQ+RC++AVL LVG+ ESP
Sbjct: 262 GVTNYMRNLQSARVVACDENHTNSGYDMYYLEIQANAFLWHQIRCIMAVLLLVGQKKESP 321
Query: 310 NVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFED-----IKFMCSSDAGE 355
VI LLD P KPQY + +PL L C+F D + + S DA E
Sbjct: 322 TVISELLDVESNPCKPQYSPAIGLPLNLFHCDFRDQTTRSVNQLGSGDANE 372
>B6K2Z9_SCHJY (tr|B6K2Z9) tRNA pseudouridine synthase OS=Schizosaccharomyces
japonicus (strain yFS275 / FY16936) GN=SJAG_02978 PE=3
SV=1
Length = 426
Score = 217 bits (553), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 120/281 (42%), Positives = 170/281 (60%), Gaps = 31/281 (11%)
Query: 75 FMSHHSKRYVALKVMYFGKRFYG--FASEAQMEPTVESEIFKALAKIRLLVGDKKESQYS 132
FM +K ++AL+ Y G + G F +E PTVE ++F+AL + L + D +S
Sbjct: 66 FMLDKTK-FIALRFAYLGWNYNGLAFQTEPTPLPTVEGKLFEALMRAHL-IKDPSTCSFS 123
Query: 133 RCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDYVRVLNRVLPNDI 192
RCGRTDKGVS++GQV++L +R + E I Y VLNR+LP DI
Sbjct: 124 RCGRTDKGVSAMGQVVSLNVRYS------------------EERPIAYCDVLNRLLPEDI 165
Query: 193 RILGWCPAPVD-FHARFSCLSREYKYFFWKE----GLNIPAMESAGIKLIGEHDFRNFCK 247
R++ + P P + F ARFSC+ R YKY F K+ L+I M A +GEHDFRNFCK
Sbjct: 166 RVIAYSPNPPEGFDARFSCVRRHYKYLFLKQYPGGELDIERMSQAAALYLGEHDFRNFCK 225
Query: 248 MDAT-NVHNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGL 306
+DA+ + NY R I +I D + QL+ ++G+AFLWHQVRCM+A+LFLVG+ L
Sbjct: 226 IDASKQITNYNRGILHSKIICVDPQ---KQLYAFDLQGTAFLWHQVRCMMAILFLVGQHL 282
Query: 307 ESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKF 347
E +++ LL+ K P KP Y M+S++PLVL C F++I++
Sbjct: 283 EPVDIVSELLNVEKNPCKPVYDMASDLPLVLYDCVFDNIQW 323
>E2AJH5_CAMFO (tr|E2AJH5) tRNA pseudouridine synthase OS=Camponotus floridanus
GN=EAG_07727 PE=3 SV=1
Length = 345
Score = 217 bits (553), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 118/305 (38%), Positives = 172/305 (56%), Gaps = 26/305 (8%)
Query: 76 MSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLVGDKKESQYSRCG 135
S + KR++ LK Y G ++GF + T+E +F AL K + ++ + Y RCG
Sbjct: 11 FSRYHKRHILLKFYYLGWDYHGFTVQEDNNDTIEHHLFTALLK-SCCIESRESANYHRCG 69
Query: 136 RTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHE--GEIDYVRVLNRVLPNDIR 193
RTDKGVSS QVI+L +RS L+ E QH E+ Y ++LNR+LP +IR
Sbjct: 70 RTDKGVSSFSQVISLDIRSRLE------------PENQHNLSEELPYCKILNRLLPTNIR 117
Query: 194 ILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMDATN- 252
+ WCP +F ARF C R YKYFF K L+I AM+ + IG+HDFRN CKMD N
Sbjct: 118 CIAWCPVSPNFSARFDCKYRTYKYFFPKSNLDIDAMDKSVKYAIGDHDFRNICKMDVANG 177
Query: 253 VHNYRRHITMFEIFPTDV---RYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLESP 309
V N++R + ++ ++ + G + ++I AFLWHQ+RC++ +L LVG+ E P
Sbjct: 178 VINFKRTVIDAKVSMSNQNVEKITGYNMCELEITSQAFLWHQIRCLMGILLLVGQRKEEP 237
Query: 310 NVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAGEALRIHLVNECQTFQ 369
+I LL+ P+KPQY M+ EVPL L C++E I++ + L+N +T Q
Sbjct: 238 EIILKLLNIETCPQKPQYNMAHEVPLNLWYCDYEGIEWFIDKN-------ELINTIKTLQ 290
Query: 370 LQAAV 374
A+
Sbjct: 291 QDWAL 295
>F4WM06_ACREC (tr|F4WM06) tRNA pseudouridine synthase OS=Acromyrmex echinatior
GN=G5I_06839 PE=3 SV=1
Length = 443
Score = 217 bits (552), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 122/343 (35%), Positives = 189/343 (55%), Gaps = 24/343 (6%)
Query: 11 IATLQARVKELEA-ENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRKSEEKIEKMT 69
+ T ++ ++LE + ++L+ ++ H + KL ++ K T + ++ K+ K
Sbjct: 9 VKTTRSTREQLEVLDKSELIDKILQLEAHNEQLKLTIT--KRTDTKMKKEETPGKVRKSF 66
Query: 70 GYNTRFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLVGDKKES 129
+ S KR++ LK Y G ++GFA + T+E +F AL K + ++ S
Sbjct: 67 DF-----SRCHKRHILLKFYYLGWDYHGFAVQEDNTDTIEHHLFAALLK-SCCIESRESS 120
Query: 130 QYSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDYVRVLNRVLP 189
Y RCGRTDKGVSS QVI+L +RS L+ + S E+ Y ++LNR+LP
Sbjct: 121 NYHRCGRTDKGVSSFSQVISLDVRSRLEPENQDNLSD----------ELPYCKILNRLLP 170
Query: 190 NDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMD 249
+IR + WCP F ARF C R Y+YFF + L+I AM+ A +IG+HDFRN CKMD
Sbjct: 171 ANIRCIAWCPVSSIFSARFDCKFRSYRYFFPRGNLDIEAMDKAAKYVIGDHDFRNICKMD 230
Query: 250 ATN-VHNYRRHITMFEIFPTD----VRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGK 304
N V N++R + + + + G + ++I AFLWHQ+RC++ +L L+G+
Sbjct: 231 VANGVINFKRTVMDARVNSLNDQNVEKSTGYDMCELEITSQAFLWHQIRCLMGILLLIGQ 290
Query: 305 GLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKF 347
E P +I LLD P+KPQY M+ +VPL L C++E I +
Sbjct: 291 RKEEPEIILKLLDIETCPQKPQYNMAHQVPLNLWYCDYESINW 333
>A5E2I9_LODEL (tr|A5E2I9) tRNA pseudouridine synthase OS=Lodderomyces
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 /
NBRC 1676 / NRRL YB-4239) GN=LELG_03826 PE=3 SV=1
Length = 491
Score = 216 bits (551), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 135/361 (37%), Positives = 198/361 (54%), Gaps = 37/361 (10%)
Query: 77 SHHSKRYVALKVMYFGKRFYG--FASEAQMEPTVESEIFKALAKIRLLVGDKKESQYSRC 134
S + R+VA+K Y G + G F ++ PTVE I KALAK++L+ +E +YS+C
Sbjct: 124 SKQNMRFVAIKFAYLGWNYNGLAFQNDPTPLPTVEEIILKALAKVKLIREPIEEVEYSKC 183
Query: 135 GRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHE-----GEIDYVRVLNRVLP 189
GRTDKGVS++ QVI++ LRSNL +EQ + E+DY V+N LP
Sbjct: 184 GRTDKGVSAMNQVISIKLRSNL------------TPQEQQDPAFDAKEVDYFTVINANLP 231
Query: 190 NDIRILGWC-PAPVDFHARFSCLSREYKYFFWKEG-LNIPAMESAGIKLIGEHDFRNFCK 247
DI++ C P +F ARFSC R Y+Y F K L+I M A G HDFRNFCK
Sbjct: 232 ADIKVHAICLRPPENFDARFSCKERHYRYLFRKTSTLDIDLMAQAAEYYEGLHDFRNFCK 291
Query: 248 MDAT-NVHNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGL 306
+D + + ++ R I +I P D GN L+ + G+AFLWHQVRCMVA+LFLVG+ L
Sbjct: 292 LDGSKQLTSFVRDIRRSKIIPLDS--DGN-LYCFDLIGNAFLWHQVRCMVAILFLVGQKL 348
Query: 307 ESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKF-----------MCSSDAGE 355
ESP ++ L+D K P KP Y M++++PLVL C F ++++ + +S
Sbjct: 349 ESPEIVKDLMDVTKFPTKPMYEMANDIPLVLYDCVFPEMEWKKFDLEYKFNILHTSFRLL 408
Query: 356 ALRIHLVNECQTFQLQAAVFHEALLNCVPLLHDQSLPPSRGTTKKKASYVPLMSRPTEPS 415
A + + NE T ++ ++ + + L + ++ P G + + Y+PL R
Sbjct: 409 AYELSIQNEV-TKIMENVLYADKREDAFKLANLKATPLGDGVGRAFSEYIPLGKRQRTDD 467
Query: 416 Y 416
Y
Sbjct: 468 Y 468
>Q22TA6_TETTS (tr|Q22TA6) tRNA pseudouridine synthase OS=Tetrahymena thermophila
(strain SB210) GN=TTHERM_00181100 PE=3 SV=1
Length = 481
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 113/278 (40%), Positives = 164/278 (58%), Gaps = 29/278 (10%)
Query: 79 HSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLVGDKKESQYSRCGRTD 138
+ +++ ALK+ Y G + G A + + + TVE ++FKAL K L+ ++ ++R GRTD
Sbjct: 109 YQQQHYALKMSYVGINYQGLAYQQETDNTVEEQLFKALEKT-TLIKNRDNCNFTRSGRTD 167
Query: 139 KGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDYVRVLNRVLPNDIRILGWC 198
KGVS++GQVI + LR+++KI GE ++E ID DIRILG
Sbjct: 168 KGVSALGQVIGITLRTSIKI--------GENIDE-----ID-----------DIRILGCS 203
Query: 199 PAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMDATNVHNYRR 258
F+ARF C R YKY+F++ ++I M+ A +GEHDFRNFCK+D NY R
Sbjct: 204 KVDPAFNARFDCQKRIYKYYFFENQMDIQRMKEAANLFLGEHDFRNFCKIDVLQTLNYVR 263
Query: 259 HITMFEIFPTDVRYGG----NQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLESPNVIDM 314
I +I +G ++L+V I+GSAFLWHQ+R M+A+LFLVG+ E P+++
Sbjct: 264 IIYQLDIEEVQANFGTLDPRSKLYVATIQGSAFLWHQIRNMMAILFLVGRKQEEPSIVTE 323
Query: 315 LLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSD 352
LLD K P KP Y M+ + PLVL C + ++ F SSD
Sbjct: 324 LLDIQKNPSKPNYEMAPDYPLVLFDCLYNNVSFNYSSD 361
>H9HAH0_ATTCE (tr|H9HAH0) tRNA pseudouridine synthase OS=Atta cephalotes PE=3
SV=1
Length = 356
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 112/272 (41%), Positives = 157/272 (57%), Gaps = 15/272 (5%)
Query: 81 KRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLVGDKKESQYSRCGRTDKG 140
KR++ LK Y G ++GFA + T+E +F AL K + ++ S Y RCGRTDKG
Sbjct: 21 KRHILLKFYYLGWDYHGFAVQEDNTDTIEHHLFAALLK-SCCIESRESSNYHRCGRTDKG 79
Query: 141 VSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDYVRVLNRVLPNDIRILGWCPA 200
VSS QVI+L +RS L+ + S E+ Y ++LNR+LP +IR + WCP
Sbjct: 80 VSSFSQVISLDVRSRLEPENQDNLSD----------ELPYCKILNRLLPANIRCIAWCPV 129
Query: 201 PVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMDATN-VHNYRRH 259
F ARF C R Y+YFF + LNI AM+ A +IG HDFRN CKMD N V N++R
Sbjct: 130 SSTFSARFDCKFRSYRYFFPRGNLNIEAMDKAAKYVIGNHDFRNICKMDVANGVINFKRT 189
Query: 260 ITMFEIFPTDV---RYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLESPNVIDMLL 316
+ + + + G + ++I AFLWHQ+RC++ +L LVG+ E P +I LL
Sbjct: 190 VMDARVSSLNQNVKKSTGYDMCELEITSQAFLWHQIRCLMGILLLVGQRKEEPEIILKLL 249
Query: 317 DTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFM 348
D P+KPQY M+ +VPL L C++E I +
Sbjct: 250 DIETCPQKPQYNMAHQVPLNLWYCDYESINWF 281
>E2B8R8_HARSA (tr|E2B8R8) tRNA pseudouridine synthase OS=Harpegnathos saltator
GN=EAI_15947 PE=3 SV=1
Length = 368
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 116/293 (39%), Positives = 167/293 (56%), Gaps = 22/293 (7%)
Query: 81 KRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLVGDKKESQYSRCGRTDKG 140
KR++ LK+ Y G + GF + T+E +F AL K + ++ S Y RCGRTDKG
Sbjct: 16 KRHILLKLYYLGWNYDGFTVQEDSNATIEHHLFAALTK-SCCIESRETSNYHRCGRTDKG 74
Query: 141 VSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDYVRVLNRVLPNDIRILGWCPA 200
VSS QVI+L +RS L+ + S E+ Y ++LN++LP +IR + WCP
Sbjct: 75 VSSFCQVISLDIRSKLEPEQQSNLSK----------ELPYCKILNKLLPTNIRCIAWCPI 124
Query: 201 PVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMDATN-VHNYRRH 259
DF ARF C R+YKYFF + L+I AM+ A +IGE DFRN CKMD N V N++R
Sbjct: 125 SSDFSARFDCKYRKYKYFFPRGNLDIDAMDKAVKYVIGEFDFRNICKMDVANGVTNFKRK 184
Query: 260 ITMFEIFPTDV---RYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLESPNVIDMLL 316
+ +I + + G + ++I AFLWHQ+RC++ +L LVGK E P +I LL
Sbjct: 185 VIDAKISMNNQAVDKSTGYDICELEITSQAFLWHQIRCLMGILLLVGKKREEPEIISKLL 244
Query: 317 DTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAGEALRIHLVNECQTFQ 369
D P+KPQY M+ EVPL L +++D +++ + L+N +T Q
Sbjct: 245 DIETCPQKPQYNMAHEVPLNLWYSDYKDTEWIIDEN-------ELINTIKTLQ 290
>R8BW34_9PEZI (tr|R8BW34) Putative pseudouridine synthase 3 protein OS=Togninia
minima UCRPA7 GN=UCRPA7_928 PE=4 SV=1
Length = 547
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 133/337 (39%), Positives = 183/337 (54%), Gaps = 70/337 (20%)
Query: 76 MSHHSKRYVALKVMYFGKRFYGFA-SEAQMEPTVESEIFKALAKIRLLVGDKKES----- 129
+S + R +ALK Y GK + GF + P++E EI+KAL RL+ ++ E
Sbjct: 62 LSRYCTRLIALKFAYLGKNYSGFEFTSGGKTPSIEEEIWKALLTARLIAPERPEEVNFSP 121
Query: 130 -QYSRCGRTDKGVSSVGQVIALYLRSN----LKISGAN-TGSSGEI-------VEEQH-- 174
+YS+CGRTD+GVS+ GQVI + +RS+ ++ S A+ G GE V+ Q
Sbjct: 122 FEYSKCGRTDRGVSAFGQVIGIRVRSSKLRRVQASQASLEGQEGEADAAGEASVDPQADE 181
Query: 175 -------EGEIDYVRVLNRVLPNDIRILGWCPAPV-DFHARFSCLSREYKYFFW------ 220
E E++Y +VLNR+LP DIRI WCP P DF ARFSC R+Y+YFF
Sbjct: 182 DDTPLPVEEEMEYCKVLNRLLPPDIRIYAWCPVPPPDFSARFSCRERQYRYFFTLPAFAP 241
Query: 221 --------------KEG-LNIPAMESAGIKLIGEHDFRNFCKMDAT-NVHNYRRHITMFE 264
K G L+I AM A G HDFRNFCK+D + + N+ R I +
Sbjct: 242 VPSSMDDQNSRNLVKPGWLDIEAMREAAKLYEGLHDFRNFCKVDPSKQITNFVRRIYEAD 301
Query: 265 I-----------FPTDVRYGGNQL--------WVIKIRGSAFLWHQVRCMVAVLFLVGKG 305
I F +D ++ L + +RGSAFLWHQ+R MV++LFLVG+G
Sbjct: 302 IVEVKDIDSSIPFLSDSQFRPASLAEGTFPKVYYFHVRGSAFLWHQIRHMVSILFLVGQG 361
Query: 306 LESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEF 342
LESP+V+ LLD + PRKP Y+++ + PLVL C F
Sbjct: 362 LESPSVVSDLLDVERYPRKPNYVLADDQPLVLWDCIF 398
>R4XHC6_9ASCO (tr|R4XHC6) Uncharacterized protein OS=Taphrina deformans PYCC 5710
GN=TAPDE_004273 PE=4 SV=1
Length = 445
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 151/413 (36%), Positives = 210/413 (50%), Gaps = 56/413 (13%)
Query: 35 SHIHEMEKKLHVSGEKNTGSIKGN----RKSEEKIEKMTGYNTRF---MSHHSKRYVALK 87
S I ++E + G K+ G + N +SE K +K+ +++ + ++YVA K
Sbjct: 14 SRIKDLESRCETDG-KDHGHVSSNIVRGSRSEPKQKKIKVQSSKRKFDFDKYQQKYVAFK 72
Query: 88 VMYFGKRFYGFASEAQME--PTVESEIFKALAKIRLLVGDKKESQYSRCGRTDKGVSSVG 145
Y G + G ++ PTVE EIFKAL K L + E ++SRCGRTDKGVS++G
Sbjct: 73 FAYLGWHYNGLVTQDMPTELPTVEEEIFKALIKTHL-ISHPDECRFSRCGRTDKGVSAMG 131
Query: 146 QVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDYVRVLNRVLPNDIRILGWCP--APVD 203
QV+AL +RS SGE + E+ ++ LN LP IRIL + AP
Sbjct: 132 QVMALNVRSAF----LKDRPSGE--ADATTKELAWLEQLNGCLPPSIRILAYDDQIAPT- 184
Query: 204 FHARFSCLSREYKYFFWKE-----GLNIPAMESAGIKLIGEHDFRNFCKMDAT-NVHNYR 257
F ARFSC R YKY LN AM A L+G+HDFRNFCK+DA+ + N+
Sbjct: 185 FDARFSCRKRHYKYLLAPRVPGAAALNRDAMNVACSYLVGDHDFRNFCKLDASKQISNFH 244
Query: 258 RHITMFEI---FPTDVRYGGNQ---LWVIKIRGSAFLWHQVRCMVAVLFLVGKGLESPNV 311
R I EI P + L+V+ + G+AFLWHQVRC+ A+L LVG+GLE P V
Sbjct: 245 RTILRCEISDLIPPQSDTLADSSLGLYVLDLEGTAFLWHQVRCITAILLLVGQGLEEPEV 304
Query: 312 IDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAGEALRIHLVNECQTFQLQ 371
+ LLD +KTP KP Y M+ + PL L C+F D + H V + F+
Sbjct: 305 VRELLDISKTPTKPIYEMADDWPLTLYDCDFGD----------QVNWKHSVQSQRIFERT 354
Query: 372 AAVFHEALLN-----------CVPLLHDQSLPPSR---GTTKKKASYVPLMSR 410
A HEA + + + + + P + G K +A+YVPLM R
Sbjct: 355 FATLHEARIKDAISSFMVDAAAISVNQEATKPGTNLGDGRIKVQANYVPLMQR 407
>B4LNF7_DROVI (tr|B4LNF7) GJ20484 OS=Drosophila virilis GN=Dvir\GJ20484 PE=4 SV=1
Length = 509
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 135/344 (39%), Positives = 192/344 (55%), Gaps = 22/344 (6%)
Query: 8 VDHIATLQARVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRKSEEKIEK 67
+D I L+A +L+ K L++ +D + +E L E+ + + K +K
Sbjct: 28 IDKIVQLEAYNFQLKNLLQKKLTE-SDKNNYEYTAVLRREDEQELKPKDSEKDTSGKKDK 86
Query: 68 MTGYNTRFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLVGDKK 127
+N + S H KR+V +KVMYFG + GFA + T+E+ +F+AL + L+ +
Sbjct: 87 QRKFN--WASAH-KRHVLIKVMYFGWDYQGFACQEDSMDTIEAYLFRALIRT-CLIESRA 142
Query: 128 ESQYSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDYVRVLNRV 187
S Y RCGRTDK VS+ QVI++ LRS ++ E EIDY +LNRV
Sbjct: 143 TSNYHRCGRTDKEVSAFCQVISIDLRSK-------HAPDVQMEPEALSSEIDYCSLLNRV 195
Query: 188 LPNDIRILGWCPA--PVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNF 245
LP +I+ + W P P + ARF C+SR Y+Y+F K L+I AM A L+ DFRNF
Sbjct: 196 LPKNIQCVSWMPLRNPA-YSARFDCISRTYRYYFPKGDLDIEAMRIACQSLVCHGDFRNF 254
Query: 246 CKMDATN-VHNYRRHITMFEIFP---TDVRYGGNQ---LWVIKIRGSAFLWHQVRCMVAV 298
CKMD N V NY R++ I P TD++ N ++ ++I+G+AFLWHQ+RC++AV
Sbjct: 255 CKMDVHNGVTNYMRNLQGAAIKPCDNTDIQMHSNSGYAMYYLEIQGNAFLWHQIRCIMAV 314
Query: 299 LFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEF 342
L LVG+ E P VI LLD P KPQY + +PL L CEF
Sbjct: 315 LLLVGQKHEQPCVISKLLDVVSNPCKPQYTPAIGLPLNLFRCEF 358
>F4P152_BATDJ (tr|F4P152) tRNA pseudouridine synthase (Fragment)
OS=Batrachochytrium dendrobatidis (strain JAM81 / FGSC
10211) GN=BATDEDRAFT_3084 PE=3 SV=1
Length = 289
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 113/274 (41%), Positives = 164/274 (59%), Gaps = 17/274 (6%)
Query: 76 MSHHSKRYVALKVMYFGKRFYGFASEAQME-PTVESEIFKALAKIRLLVGDKKESQYSRC 134
+ H R++ALK+ Y G ++YGFAS + PTVES IFKAL RL+ D +SRC
Sbjct: 18 FAKHRARHIALKISYIGDKYYGFASASNDSVPTVESYIFKALEVARLIPSDGGACAWSRC 77
Query: 135 GRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDYVRVLNRVLPNDIRI 194
GRTDKGVS+ QV+++++R+ A G + +Q + Y+ +LNR+LP+DIR+
Sbjct: 78 GRTDKGVSAFDQVVSVWVRT------ARPGDRDTLDWDQ----LPYLNILNRLLPDDIRV 127
Query: 195 LGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMDATNVH 254
L W P F ARF+C R+Y YFF GL++ AM A + +G HD R+ CK+D T
Sbjct: 128 LAWSPVDPIFDARFTCSHRKYNYFFDGAGLDLIAMRDAASRFVGTHDCRHICKIDPTKAA 187
Query: 255 N---YRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLESPNV 311
+ R I +I P V ++ V+ ++G AFLWHQVR M+A+LFL+G+G+E P++
Sbjct: 188 REGFFVRTIMECDIVPVPVDGAPDRFHVLVVKGRAFLWHQVRNMMALLFLIGRGMEMPDM 247
Query: 312 IDMLLDTNK---TPRKPQYIMSSEVPLVLQSCEF 342
I +LD K +P Y M+ + PLVL C +
Sbjct: 248 ISDMLDLTKHAPAAGRPFYEMAPDGPLVLVECAY 281
>Q8X025_NEUCS (tr|Q8X025) Related to pseudouridine synthase 3 OS=Neurospora
crassa GN=B21D9.110 PE=3 SV=1
Length = 669
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 132/347 (38%), Positives = 180/347 (51%), Gaps = 84/347 (24%)
Query: 79 HSKRYVALKVMYFGKRFYGF--ASEAQMEPTVESEIFKALAKIRLLVGDKKES------Q 130
+S R +ALK Y GK + GF S A+M P++E E++KAL K L+ ++ + +
Sbjct: 137 YSTRLIALKFAYLGKNYNGFEYQSSAKM-PSIEEELWKALVKSCLIFPERPDEVDFGPWE 195
Query: 131 YSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSG---------EIVEEQHE------ 175
YS+CGRTD+GVS+ GQVI + +RSN + +G E ++Q +
Sbjct: 196 YSKCGRTDRGVSAFGQVIGIRVRSNKPLPKEEPEQTGNEEDDVVMVEAAQQQAKDSEKAA 255
Query: 176 --------------GEIDYVRVLNRVLPNDIRILGWCPA-PVDFHARFSCLSREYKYFF- 219
EI Y RVLNR+LP DIRI+ W P P +F ARFSC R+Y+YFF
Sbjct: 256 AEVDHQKPEWDPIADEIPYCRVLNRLLPPDIRIMAWAPDLPPNFSARFSCRERQYRYFFT 315
Query: 220 -----------------------WKEG-LNIPAMESAGIKLIGEHDFRNFCKMD-ATNVH 254
K+G L+I M A G HDFRNFCK+D +
Sbjct: 316 QPAFAPMPSTLEPPLASSGHKSGGKQGWLDIDMMRKAAKMFEGVHDFRNFCKIDPGKQIT 375
Query: 255 NYRRHITMFEI-----FPTDVRYGG--------------NQLWVIKIRGSAFLWHQVRCM 295
N+ R + +I +D+ Y G +++ +RGSAFLWHQ+R M
Sbjct: 376 NFSRRVFESDIVEVKDLESDLPYLGLPEFQPPAGSDGPHPKVYYFHVRGSAFLWHQIRHM 435
Query: 296 VAVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEF 342
VAVLFLVG+GLE P+++ LLD K PRKP Y+M+ EVPLVL C F
Sbjct: 436 VAVLFLVGQGLEPPSIVQQLLDVEKNPRKPNYVMADEVPLVLWDCIF 482
>Q7RYJ7_NEUCR (tr|Q7RYJ7) Putative uncharacterized protein OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=NCU01784 PE=3 SV=1
Length = 608
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 132/347 (38%), Positives = 180/347 (51%), Gaps = 84/347 (24%)
Query: 79 HSKRYVALKVMYFGKRFYGF--ASEAQMEPTVESEIFKALAKIRLLVGDKKES------Q 130
+S R +ALK Y GK + GF S A+M P++E E++KAL K L+ ++ + +
Sbjct: 76 YSTRLIALKFAYLGKNYNGFEYQSSAKM-PSIEEELWKALVKSCLIFPERPDEVDFGPWE 134
Query: 131 YSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSG---------EIVEEQHE------ 175
YS+CGRTD+GVS+ GQVI + +RSN + +G E ++Q +
Sbjct: 135 YSKCGRTDRGVSAFGQVIGIRVRSNKPLPKEEPEQTGNEEDDVVMVEAAQQQAKDSEKAA 194
Query: 176 --------------GEIDYVRVLNRVLPNDIRILGWCPA-PVDFHARFSCLSREYKYFF- 219
EI Y RVLNR+LP DIRI+ W P P +F ARFSC R+Y+YFF
Sbjct: 195 AEVDHQKPEWDPIADEIPYCRVLNRLLPPDIRIMAWAPDLPPNFSARFSCRERQYRYFFT 254
Query: 220 -----------------------WKEG-LNIPAMESAGIKLIGEHDFRNFCKMD-ATNVH 254
K+G L+I M A G HDFRNFCK+D +
Sbjct: 255 QPAFAPMPSTLEPPLASSGHKSGGKQGWLDIDMMRKAAKMFEGVHDFRNFCKIDPGKQIT 314
Query: 255 NYRRHITMFEI-----FPTDVRYGG--------------NQLWVIKIRGSAFLWHQVRCM 295
N+ R + +I +D+ Y G +++ +RGSAFLWHQ+R M
Sbjct: 315 NFSRRVFESDIVEVKDLESDLPYLGLPEFQPPAGSDGPHPKVYYFHVRGSAFLWHQIRHM 374
Query: 296 VAVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEF 342
VAVLFLVG+GLE P+++ LLD K PRKP Y+M+ EVPLVL C F
Sbjct: 375 VAVLFLVGQGLEPPSIVQQLLDVEKNPRKPNYVMADEVPLVLWDCIF 421
>L2GEW4_COLGN (tr|L2GEW4) tRNA pseudouridine synthase OS=Colletotrichum
gloeosporioides (strain Nara gc5) GN=CGGC5_3650 PE=3
SV=1
Length = 500
Score = 214 bits (545), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 131/368 (35%), Positives = 199/368 (54%), Gaps = 64/368 (17%)
Query: 24 ENAKLLSQLADSHI-HEMEKKLHVSGEKNTGSIKGNRKSEEKIEKMTGYNTRFMSHHSKR 82
E +L+S++ H+ HE++K+ + + G+ + K +K G + S +S R
Sbjct: 12 EKERLISRI--RHLEHELDKQKAAASKAVDGAAAPPPAKKRKTKK--GIDP---SRYSTR 64
Query: 83 YVALKVMYFGKRFYGFA-SEAQMEPTVESEIFKALAKIRLLVGDKKE------SQYSRCG 135
++ALK+ Y GKR+ GF +++ PT+E E++ AL K L+ + +YS+CG
Sbjct: 65 FIALKLAYLGKRYGGFEYADSAALPTIEGELWNALTKACLIFPEDPAVVNFDCCEYSKCG 124
Query: 136 RTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEE----------------------- 172
RTD+GVS+ GQV+ L +RS+ + + + +
Sbjct: 125 RTDRGVSAFGQVLGLRVRSSKPLPKPDPAPTEGDADTPMEGTAEKTETEEETKKKPEVEW 184
Query: 173 QHEGEIDYVRVLNRVLPNDIRILGWCPAPV-DFHARFSCLSREYKYFFWKEGLNIPAMES 231
E EIDY++ LNR+LP+DIRIL WCP+P F ARFSC R+ + I AM++
Sbjct: 185 SDEKEIDYIKTLNRLLPDDIRILAWCPSPPPGFSARFSCEERQ------RATSTIEAMDA 238
Query: 232 AGIKLIGEHDFRNFCKMDA-TNVHNYRRHITMFEIFPTDVRYGGNQL------------- 277
A +G+HDFRNFCK+D + N+ R MFE +V+ G+ L
Sbjct: 239 AAQLFVGDHDFRNFCKVDGGKQITNFERR--MFEAGVEEVKDVGSALPYLGLSSADGSKL 296
Query: 278 ---WVIKIRGSAFLWHQVRCMVAVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVP 334
+ IRG+AFLWHQ+R MV++LFLVG+ LE P ++ LLD KTPRKP Y ++++ P
Sbjct: 297 PKVYSFNIRGTAFLWHQIRHMVSILFLVGQRLEKPELVAELLDVEKTPRKPNYDLANDTP 356
Query: 335 LVLQSCEF 342
LVL +C F
Sbjct: 357 LVLWNCVF 364
>B6H2I9_PENCW (tr|B6H2I9) Pc13g14530 protein OS=Penicillium chrysogenum (strain
ATCC 28089 / DSM 1075 / Wisconsin 54-1255) GN=Pc13g14530
PE=3 SV=1
Length = 548
Score = 214 bits (544), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 128/334 (38%), Positives = 171/334 (51%), Gaps = 86/334 (25%)
Query: 77 SHHSKRYVALKVMYFGKRFYGFA---SEAQMEPTVESEIFKALAKIRLLV---------G 124
S +S R++ALK Y G+ + G PTVE ++KAL + RL+
Sbjct: 110 SKYSTRFIALKFAYLGQAYNGLEHTNGNTTPLPTVEEVLWKALRRTRLISPETTSDLEPS 169
Query: 125 DKKES-------------QYSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVE 171
D+ E +YS+ GRTDKGVS+ GQVI L +R++
Sbjct: 170 DRAERVPMRPYHLYWDGCEYSKAGRTDKGVSAFGQVIGLRVRTD---------------- 213
Query: 172 EQHEGEIDYVRVLNRVLPNDIRILGWCP-APVDFHARFSCLSREYKYFF----------- 219
E++Y+ VLNRVLP DIR+L WCP P F ARFSC R YKYFF
Sbjct: 214 -----EMNYINVLNRVLPEDIRVLAWCPNPPPGFDARFSCRERRYKYFFTNPAFSPTPGS 268
Query: 220 ----------------WKEG-LNIPAMESAGIKLIGEHDFRNFCKMDAT-NVHNYRR--H 259
++EG L+I AM A G HDFRNFCK+D + N+ R H
Sbjct: 269 IGFQNRAQNGNGPRAEFREGWLDIEAMREAAKHFEGSHDFRNFCKLDTNKQIDNFERIIH 328
Query: 260 ITMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLESPNVIDMLLDTN 319
++ + P Q++ + GSAFLWHQVR MVA+LFLVG+GLESP+++ LLD
Sbjct: 329 HSISQSIP--------QVYSFNLHGSAFLWHQVRHMVAILFLVGQGLESPSIVPELLDVA 380
Query: 320 KTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDA 353
K PRKP Y M+ + PLVL C F D++ +D+
Sbjct: 381 KNPRKPTYAMADDAPLVLWDCIFPDVESGSRADS 414
>F8QAC7_SERL3 (tr|F8QAC7) tRNA pseudouridine synthase OS=Serpula lacrymans var.
lacrymans (strain S7.3) GN=SERLA73DRAFT_114183 PE=3 SV=1
Length = 464
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 137/390 (35%), Positives = 201/390 (51%), Gaps = 72/390 (18%)
Query: 76 MSHHSKRYVALKVMYFGKRFYG--FASEAQMEPTVESEIFKALAKIRLLVGDK--KESQY 131
+ H +R +A+K Y G + G F + PTVE +F A AK RL+ DK +
Sbjct: 52 FTSHPRRKIAVKFCYSGWEYNGLAFQNGPTPLPTVEEVLFNAFAKTRLVDPDKGLDGCGW 111
Query: 132 SRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDYVRVLNRVLPND 191
RCGRTD+GVS+ GQV++L+ S + E+ E+ YV +LNRVLP
Sbjct: 112 ERCGRTDRGVSAAGQVVSLW------------PSMRQPSREETRSELRYVSILNRVLPPT 159
Query: 192 IRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMD-A 250
IR+L W P F ARF+C SR YKYFF + L++ M+ A +L+GEHDFRN CK+D A
Sbjct: 160 IRVLAWSPISSTFSARFNCQSRHYKYFFSPQELDLGLMQQAADRLVGEHDFRNLCKLDPA 219
Query: 251 TNVHNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLESPN 310
+ N+ R + + +I P + L V +RG+AFL+HQVR ++A+LFLVG GLE P+
Sbjct: 220 KQITNFNRRVLLAKISPI-----SDHLCVFDLRGTAFLYHQVRHIMAILFLVGTGLEHPS 274
Query: 311 VIDMLLDTNK---TP------------RKPQYIMSSEVPLVLQSCEF--EDIKFMCSSDA 353
++ LL+ K +P RKP+Y M+ +PL+L C + D+++ D
Sbjct: 275 IVSTLLNVGKETNSPSELDNSPLEIVDRKPEYQMADGLPLMLWDCAYSDSDVQWQTDIDT 334
Query: 354 GE----------------------ALRIHLVN---ECQTFQLQAAVF-HEAL-LNCVPLL 386
GE AL H ++ + + Q F H L L+ +P+L
Sbjct: 335 GESGTGSELYHQLHSIYARSSIHTALDAHFLSAAAQLHSHPPQRFPFSHTGLALSTIPVL 394
Query: 387 HDQ------SLPPSRGTTKKKASYVPLMSR 410
S+P GT K+ A Y+P++ R
Sbjct: 395 LKSKERPVLSVPLGGGTFKRTAKYIPVLLR 424
>B4I810_DROSE (tr|B4I810) tRNA pseudouridine synthase OS=Drosophila sechellia
GN=Dsec\GM15659 PE=3 SV=1
Length = 498
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 129/336 (38%), Positives = 187/336 (55%), Gaps = 20/336 (5%)
Query: 17 RVKELEAENAKL----LSQLADSHIHEMEKKLHVSGEKNTGSIKGNRKSEEKIEKMTGYN 72
+V +LEA N +L +L++ H+ME + G + G + + K++K ++
Sbjct: 34 KVVQLEAYNFQLRHLLQKKLSEHDKHDMEYS-GLFGNEADGKVSQVANTSIKVQKKRMFD 92
Query: 73 TRFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLVGDKKESQYS 132
+ S H KR+V LK+ YFG + GFA + T+ES +F+AL + L+ + S Y
Sbjct: 93 --WSSAH-KRHVLLKITYFGWDYQGFACQEDSNDTIESNLFRALTRT-CLIESRATSNYH 148
Query: 133 RCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDYVRVLNRVLPNDI 192
RCGRTDK VS+ QVI++ LRS ++ EIDY +LNRVLP +I
Sbjct: 149 RCGRTDKEVSAFCQVISIDLRSK-------HPPESQLDPTSLSSEIDYCGLLNRVLPKNI 201
Query: 193 RILGWCPAPVD-FHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMDAT 251
+ + W P + ARF C+SR Y+YFF K L+I AM A L+ DFRNFCKMD
Sbjct: 202 QCVAWMPLRSSVYSARFDCVSRSYRYFFPKGDLDIAAMRKACDLLVRHADFRNFCKMDVH 261
Query: 252 N-VHNYRRHITMFEIFPTDVRY--GGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLES 308
N V NY R++ + D + G ++ ++IR +AFLWHQ+RC++AVL LVG+ E
Sbjct: 262 NGVTNYMRNLQSARVEACDENHTNSGYDMYYLEIRANAFLWHQIRCIMAVLILVGQKKEK 321
Query: 309 PNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFED 344
P +I LL+ P KPQY + +PL L C+F D
Sbjct: 322 PAIISDLLNVESNPCKPQYTPAIGLPLNLFRCDFRD 357
>B4P7E9_DROYA (tr|B4P7E9) tRNA pseudouridine synthase OS=Drosophila yakuba
GN=Dyak\GE11697 PE=3 SV=1
Length = 497
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 130/336 (38%), Positives = 188/336 (55%), Gaps = 21/336 (6%)
Query: 17 RVKELEAENAKLLSQLADSHIHEMEKKLHVS---GEKNTGSIKGNRKSEEKIEKMTGYNT 73
+V +LEA N +L L + E +K S G + + K+ K++K ++
Sbjct: 34 KVVQLEAYNFQL-RNLLQKKLTEQDKLGEYSVLFGNEAEDRVTQVAKTSSKVQKQRKFD- 91
Query: 74 RFMSHHSKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLVGDKKESQYSR 133
+ S H KR+V LK+ YFG + GFA + T+E+ +F+AL + L+ + S Y R
Sbjct: 92 -WSSAH-KRHVLLKITYFGWDYQGFACQEDSNDTIEANLFRALTRT-CLIESRATSNYHR 148
Query: 134 CGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDYVRVLNRVLPNDIR 193
CGRTDK VS+ QVI++ LRS ++ EIDY +LNRVLP +I+
Sbjct: 149 CGRTDKEVSAFCQVISIDLRSK-------HPPESQLDPTAISTEIDYCGLLNRVLPKNIQ 201
Query: 194 ILGWCP--APVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMDAT 251
+ W P +PV + ARF C+SR Y+Y+F K L+I AM A L+ DFRNFCKMD
Sbjct: 202 CVAWMPLRSPV-YSARFDCVSRSYRYYFPKGDLDIAAMSKACDLLVRHADFRNFCKMDVH 260
Query: 252 N-VHNYRRHITMFEIFPTDVRY--GGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLES 308
N V NY R++ + D + G ++ ++I+ +AFLWHQ+RC++AVL LVG+ E+
Sbjct: 261 NGVTNYMRNLQSARVEACDENHTNSGYDMYYLEIQANAFLWHQIRCIMAVLLLVGQKKEN 320
Query: 309 PNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFED 344
P VI LLD P KPQY + +PL L C+F D
Sbjct: 321 PAVISKLLDVESNPCKPQYTPAIGLPLNLFRCDFRD 356
>B0D7R0_LACBS (tr|B0D7R0) tRNA pseudouridine synthase OS=Laccaria bicolor (strain
S238N-H82 / ATCC MYA-4686) GN=LACBIDRAFT_184424 PE=3
SV=1
Length = 446
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 130/380 (34%), Positives = 198/380 (52%), Gaps = 62/380 (16%)
Query: 76 MSHHSKRYVALKVMYFGKRFYGFASE--AQMEPTVESEIFKALAKIRLLVGDK--KESQY 131
S H +R +ALK Y G + G A + PTVE +F ALAK RL+ + + +
Sbjct: 44 FSSHPRRKIALKFSYSGWEYGGLAFQLGPTPLPTVEGVLFDALAKARLIDQEAGFEGCGW 103
Query: 132 SRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDYVRVLNRVLPND 191
+CGRTD+GVS+ GQV++L+ ++ + E DY+ +LNR+LP+
Sbjct: 104 EKCGRTDRGVSAAGQVVSLWATTS-----------------KPTFEHDYLSILNRLLPDT 146
Query: 192 IRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFRNFCKMDAT 251
IR+L W P F ARFSCL R YKYFF GL+IP M+ A ++L+G+HDFRN CK+D
Sbjct: 147 IRVLAWSPVAPKFSARFSCLYRHYKYFFSPLGLDIPRMQQAALRLVGDHDFRNLCKLDPQ 206
Query: 252 -NVHNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVGKGLESPN 310
+ +RR + EI P + G ++V + G+AFL+HQVR ++A+LFLVG GLE P+
Sbjct: 207 KQITIFRRKVITAEIEPLSLAENGEGVYVFNLVGTAFLYHQVRHIMAILFLVGTGLEPPS 266
Query: 311 VIDMLLDT---------NKTP-----RKPQYIMSSEVPLVLQSCEFEDIKFMCSS----- 351
V+ LL+ +P RKP+Y M+ +PL+L C + + + +
Sbjct: 267 VVSSLLNVEAGVEPTKDGDSPYEVVDRKPEYQMADALPLMLWECGYPETEVSWRTTGKPD 326
Query: 352 DAGEALRIHLVNECQT--------------FQLQAAVFHEALLNCVPLLHDQ-------S 390
D G A L ++ Q+ F A++ H + P+ + + +
Sbjct: 327 DDGSAQGGTLYHQMQSIHSRSQIYTTLNQHFFAAASIHHPPPPSLFPVSNVELLPREAMN 386
Query: 391 LPPSRGTTKKKASYVPLMSR 410
+P GT K+ +Y PL+ R
Sbjct: 387 IPLGGGTFKRSNNYTPLLKR 406
>N9T8Z9_ENTHI (tr|N9T8Z9) tRNA pseudouridine synthase, putative OS=Entamoeba
histolytica HM-1:IMSS-A GN=EHI7A_000411 PE=4 SV=1
Length = 366
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 113/288 (39%), Positives = 167/288 (57%), Gaps = 29/288 (10%)
Query: 76 MSHHSKRYVALKVMYFGKRFYGF-------ASEAQMEP-----TVESEIFKALAKIRLLV 123
+++ R++A+++ Y G + G ++A + T+E ++FKAL K RL +
Sbjct: 30 FNNYKTRHIAIRLTYIGIDYNGIQCTLLNDVTDATFDSVINDGTIEYQLFKALFKTRL-I 88
Query: 124 GDKKESQYSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEIDYVRV 183
+ K+ +Y+RCGRTDKGVS+ GQV+ L++RSNLK I+ + EGE+DY R+
Sbjct: 89 QNTKDCKYNRCGRTDKGVSAFGQVVDLWVRSNLK--------DETILYTKREGELDYCRM 140
Query: 184 LNRVLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKLIGEHDFR 243
LN +LP DIR LGWC P DF++RFSC SR Y Y+F ++P M+ A +GEHDF
Sbjct: 141 LNGLLPTDIRCLGWCGVPDDFNSRFSCQSRTYHYYFDPSSYDVPKMKEAAQLFLGEHDFT 200
Query: 244 NFCKMDATNVHNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMVAVLFLVG 303
NFCK D H RR + FE+ TD L + G+AF+WHQVR MV LF +G
Sbjct: 201 NFCKKDPAVSHCVRR-VNSFEVEETD------GLSRFVVCGTAFVWHQVRYMVGALFAIG 253
Query: 304 KGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSS 351
+G +P I LLD + + + PLVL C+++ ++F+C +
Sbjct: 254 QG-ANPESIKQLLDVEHYTKPNYFKYAPAYPLVLYECKYDGVEFLCDN 300