Miyakogusa Predicted Gene
- Lj5g3v0659340.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v0659340.1 Non Chatacterized Hit- tr|I1LZ84|I1LZ84_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.37816 PE,72.2,0,Sigma2
domain of RNA polymerase sigma factors,RNA polymerase sigma factor,
region 2; Sigma3 and sigm,CUFF.53640.1
(569 letters)
Database: trembl
41,451,118 sequences; 13,208,986,710 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
I1LZ84_SOYBN (tr|I1LZ84) Uncharacterized protein OS=Glycine max ... 791 0.0
G7IA88_MEDTR (tr|G7IA88) RNA polymerase sigma factor OS=Medicago... 764 0.0
I1L8Z5_SOYBN (tr|I1L8Z5) Uncharacterized protein OS=Glycine max ... 764 0.0
I1NAA3_SOYBN (tr|I1NAA3) Uncharacterized protein OS=Glycine max ... 617 e-174
I1JPP1_SOYBN (tr|I1JPP1) Uncharacterized protein OS=Glycine max ... 616 e-174
B9MTE1_POPTR (tr|B9MTE1) Predicted protein OS=Populus trichocarp... 581 e-163
B9S0J0_RICCO (tr|B9S0J0) RNA polymerase sigma factor rpoD, putat... 578 e-162
D7TQP0_VITVI (tr|D7TQP0) Putative uncharacterized protein OS=Vit... 572 e-160
G7L3V2_MEDTR (tr|G7L3V2) RNA polymerase sigma factor rpoD OS=Med... 556 e-156
M5WAB7_PRUPE (tr|M5WAB7) Uncharacterized protein OS=Prunus persi... 554 e-155
E4MX68_THEHA (tr|E4MX68) mRNA, clone: RTFL01-17-E04 OS=Thellungi... 494 e-137
R0HNL5_9BRAS (tr|R0HNL5) Uncharacterized protein OS=Capsella rub... 491 e-136
D7LJA3_ARALL (tr|D7LJA3) RNA polymerase sigma-70 factor OS=Arabi... 491 e-136
I3SER7_LOTJA (tr|I3SER7) Uncharacterized protein OS=Lotus japoni... 478 e-132
K4CQJ3_SOLLC (tr|K4CQJ3) Uncharacterized protein OS=Solanum lyco... 477 e-132
M1BY22_SOLTU (tr|M1BY22) Uncharacterized protein OS=Solanum tube... 473 e-131
M4DL32_BRARP (tr|M4DL32) Uncharacterized protein OS=Brassica rap... 473 e-131
M1BY20_SOLTU (tr|M1BY20) Uncharacterized protein OS=Solanum tube... 461 e-127
M1BY21_SOLTU (tr|M1BY21) Uncharacterized protein OS=Solanum tube... 414 e-113
I1K2F4_SOYBN (tr|I1K2F4) Uncharacterized protein (Fragment) OS=G... 405 e-110
M0RSY5_MUSAM (tr|M0RSY5) Uncharacterized protein OS=Musa acumina... 387 e-105
R0FW66_9BRAS (tr|R0FW66) Uncharacterized protein OS=Capsella rub... 361 5e-97
G7L2W1_MEDTR (tr|G7L2W1) RNA polymerase sigma factor rpoD OS=Med... 331 4e-88
K4A7Y8_SETIT (tr|K4A7Y8) Uncharacterized protein OS=Setaria ital... 331 5e-88
J3MRH6_ORYBR (tr|J3MRH6) Uncharacterized protein OS=Oryza brachy... 330 9e-88
M0WB57_HORVD (tr|M0WB57) Uncharacterized protein OS=Hordeum vulg... 330 1e-87
M0WB53_HORVD (tr|M0WB53) Uncharacterized protein OS=Hordeum vulg... 330 1e-87
M0WB51_HORVD (tr|M0WB51) Uncharacterized protein OS=Hordeum vulg... 329 2e-87
M0WB48_HORVD (tr|M0WB48) Uncharacterized protein OS=Hordeum vulg... 328 4e-87
M8A8U2_TRIUA (tr|M8A8U2) RNA polymerase sigma factor rpoD OS=Tri... 327 9e-87
Q84LK8_ORYSJ (tr|Q84LK8) Os08g0242800 protein OS=Oryza sativa su... 327 1e-86
I1QGT9_ORYGL (tr|I1QGT9) Uncharacterized protein OS=Oryza glaber... 326 1e-86
I1GKK0_BRADI (tr|I1GKK0) Uncharacterized protein OS=Brachypodium... 326 2e-86
B4FJ30_MAIZE (tr|B4FJ30) SIGMA70-like transcription factor OS=Ze... 318 4e-84
B8BC85_ORYSI (tr|B8BC85) Putative uncharacterized protein OS=Ory... 316 1e-83
A3BR19_ORYSJ (tr|A3BR19) Putative uncharacterized protein OS=Ory... 315 3e-83
Q9ZPL0_MAIZE (tr|Q9ZPL0) Sigma factor SIG6 OS=Zea mays GN=sig6 P... 311 3e-82
M1BY23_SOLTU (tr|M1BY23) Uncharacterized protein OS=Solanum tube... 306 1e-80
M8BZZ6_AEGTA (tr|M8BZZ6) RNA polymerase sigma factor rpoD OS=Aeg... 305 3e-80
Q9AYR7_9BRYO (tr|Q9AYR7) PpSIG2 OS=Physcomitrella patens GN=Sig2... 294 8e-77
E1C9M6_PHYPA (tr|E1C9M6) Plastid sigma facor SIG2 OS=Physcomitre... 294 8e-77
K0ISZ8_MARPO (tr|K0ISZ8) Plastid RNA polymerase sigma factor 2 O... 282 2e-73
B8LLW6_PICSI (tr|B8LLW6) Putative uncharacterized protein OS=Pic... 274 8e-71
B8LQB0_PICSI (tr|B8LQB0) Putative uncharacterized protein OS=Pic... 273 1e-70
A9RTR4_PHYPA (tr|A9RTR4) Uncharacterized protein OS=Physcomitrel... 271 5e-70
D7KIT0_ARALL (tr|D7KIT0) Putative uncharacterized protein OS=Ara... 259 3e-66
R0IC61_9BRAS (tr|R0IC61) Uncharacterized protein OS=Capsella rub... 258 4e-66
Q710C3_SPIOL (tr|Q710C3) Sigma factor OS=Spinacia oleracea GN=si... 254 5e-65
K7KHD7_SOYBN (tr|K7KHD7) Uncharacterized protein OS=Glycine max ... 254 9e-65
D7UB90_VITVI (tr|D7UB90) Putative uncharacterized protein OS=Vit... 253 1e-64
B9SDA3_RICCO (tr|B9SDA3) RNA polymerase sigma factor rpoD1, puta... 252 3e-64
B7KDV7_CYAP7 (tr|B7KDV7) RNA polymerase sigma factor OS=Cyanothe... 251 6e-64
E0UHZ3_CYAP2 (tr|E0UHZ3) RNA polymerase sigma factor OS=Cyanothe... 249 2e-63
K8GQ72_9CYAN (tr|K8GQ72) RNA polymerase sigma factor OS=Oscillat... 249 3e-63
K9YFR5_HALP7 (tr|K9YFR5) RNA polymerase sigma factor OS=Halothec... 248 3e-63
A9RTR6_PHYPA (tr|A9RTR6) Uncharacterized protein OS=Physcomitrel... 248 4e-63
M4DQ26_BRARP (tr|M4DQ26) Uncharacterized protein OS=Brassica rap... 248 7e-63
K9S7N4_9CYAN (tr|K9S7N4) RNA polymerase sigma factor OS=Geitleri... 247 9e-63
K9Q1H6_9CYAN (tr|K9Q1H6) RNA polymerase sigma factor OS=Leptolyn... 246 1e-62
Q9MTH3_SINAL (tr|Q9MTH3) Sigma factor 2 (Precursor) OS=Sinapis a... 246 2e-62
B4WPM0_9SYNE (tr|B4WPM0) RNA polymerase sigma factor OS=Synechoc... 246 2e-62
K9T849_9CYAN (tr|K9T849) RNA polymerase sigma factor OS=Pleuroca... 246 3e-62
K9TM07_9CYAN (tr|K9TM07) RNA polymerase sigma factor OS=Oscillat... 245 3e-62
K9ZHC6_ANACC (tr|K9ZHC6) RNA polymerase sigma factor OS=Anabaena... 245 3e-62
F5UG89_9CYAN (tr|F5UG89) RNA polymerase sigma factor OS=Microcol... 245 4e-62
A0ZJC3_NODSP (tr|A0ZJC3) RNA polymerase sigma factor OS=Nodulari... 245 4e-62
B9IPZ1_POPTR (tr|B9IPZ1) Predicted protein OS=Populus trichocarp... 244 5e-62
K4AY41_SOLLC (tr|K4AY41) Uncharacterized protein OS=Solanum lyco... 244 6e-62
K9VRX0_9CYAN (tr|K9VRX0) RNA polymerase sigma factor OS=Oscillat... 244 7e-62
G6FUP1_9CYAN (tr|G6FUP1) RNA polymerase sigma factor OS=Fischere... 244 8e-62
B9I6F1_POPTR (tr|B9I6F1) Predicted protein OS=Populus trichocarp... 244 8e-62
K9PJQ4_9CYAN (tr|K9PJQ4) RNA polymerase sigma factor OS=Calothri... 244 9e-62
M4EPL2_BRARP (tr|M4EPL2) Uncharacterized protein OS=Brassica rap... 244 1e-61
F4XPJ0_9CYAN (tr|F4XPJ0) RNA polymerase sigma factor OS=Moorea p... 244 1e-61
K9Q8G4_9NOSO (tr|K9Q8G4) RNA polymerase sigma factor OS=Nostoc s... 243 1e-61
K9WH45_9CYAN (tr|K9WH45) RNA polymerase sigma factor OS=Microcol... 243 1e-61
C7QR23_CYAP0 (tr|C7QR23) RNA polymerase sigma factor OS=Cyanothe... 243 1e-61
B7K1V2_CYAP8 (tr|B7K1V2) RNA polymerase sigma factor OS=Cyanothe... 243 1e-61
Q9L4T2_NOSP7 (tr|Q9L4T2) RNA polymerase sigma factor OS=Nostoc p... 243 2e-61
Q59965_SYNP2 (tr|Q59965) RNA polymerase sigma factor OS=Synechoc... 243 2e-61
K9QTZ2_NOSS7 (tr|K9QTZ2) RNA polymerase sigma factor OS=Nostoc s... 243 2e-61
B4W0Y8_9CYAN (tr|B4W0Y8) RNA polymerase sigma factor OS=Coleofas... 242 3e-61
D7E0K7_NOSA0 (tr|D7E0K7) RNA polymerase sigma factor OS=Nostoc a... 242 3e-61
D4TQC8_9NOST (tr|D4TQC8) RNA polymerase sigma factor OS=Raphidio... 242 3e-61
M1D2M3_SOLTU (tr|M1D2M3) Uncharacterized protein OS=Solanum tube... 242 4e-61
G7J988_MEDTR (tr|G7J988) RNA polymerase sigma factor rpoD OS=Med... 242 4e-61
D8G4S3_9CYAN (tr|D8G4S3) RNA polymerase sigma factor OS=Oscillat... 241 5e-61
K9XY46_STAC7 (tr|K9XY46) RNA polymerase sigma factor OS=Stanieri... 241 5e-61
M1WSP5_9NOST (tr|M1WSP5) RNA polymerase sigma factor OS=Richelia... 241 5e-61
K9TYL7_9CYAN (tr|K9TYL7) RNA polymerase sigma factor OS=Chroococ... 241 6e-61
Q3MDA3_ANAVT (tr|Q3MDA3) RNA polymerase sigma factor OS=Anabaena... 241 7e-61
M5VUM6_PRUPE (tr|M5VUM6) Uncharacterized protein OS=Prunus persi... 240 9e-61
M0STE2_MUSAM (tr|M0STE2) Uncharacterized protein OS=Musa acumina... 240 1e-60
K9XHA2_9CHRO (tr|K9XHA2) RNA polymerase sigma factor OS=Gloeocap... 240 1e-60
K9V2E9_9CYAN (tr|K9V2E9) RNA polymerase sigma factor OS=Calothri... 240 1e-60
D4TFK7_9NOST (tr|D4TFK7) RNA polymerase sigma factor OS=Cylindro... 240 1e-60
K9UM88_9CHRO (tr|K9UM88) RNA polymerase sigma factor OS=Chamaesi... 239 2e-60
K9W354_9CYAN (tr|K9W354) RNA polymerase sigma factor OS=Crinaliu... 239 3e-60
K9R7S3_9CYAN (tr|K9R7S3) RNA polymerase sigma factor OS=Rivulari... 239 3e-60
Q7U5C4_SYNPX (tr|Q7U5C4) RNA polymerase sigma factor OS=Synechoc... 238 3e-60
L8LB48_9CYAN (tr|L8LB48) RNA polymerase sigma factor OS=Leptolyn... 238 4e-60
Q05YJ7_9SYNE (tr|Q05YJ7) RNA polymerase sigma factor OS=Synechoc... 238 4e-60
Q3AWQ6_SYNS9 (tr|Q3AWQ6) RNA polymerase sigma factor OS=Synechoc... 238 4e-60
C6SYT0_SOYBN (tr|C6SYT0) Putative uncharacterized protein (Fragm... 238 6e-60
Q10UV2_TRIEI (tr|Q10UV2) RNA polymerase sigma factor OS=Trichode... 237 8e-60
K9X1I3_9NOST (tr|K9X1I3) RNA polymerase sigma factor OS=Cylindro... 237 8e-60
D0CLH5_9SYNE (tr|D0CLH5) RNA polymerase sigma factor OS=Synechoc... 237 1e-59
Q3ALS7_SYNSC (tr|Q3ALS7) RNA polymerase sigma factor OS=Synechoc... 236 1e-59
K9YRT3_DACSA (tr|K9YRT3) RNA polymerase sigma factor OS=Dactyloc... 236 1e-59
K9Z8E6_CYAAP (tr|K9Z8E6) RNA polymerase sigma factor OS=Cyanobac... 236 2e-59
L8L5U0_9SYNC (tr|L8L5U0) RNA polymerase sigma factor OS=Synechoc... 236 2e-59
B0CDC4_ACAM1 (tr|B0CDC4) RNA polymerase sigma factor OS=Acaryoch... 236 3e-59
A4CRY9_SYNPV (tr|A4CRY9) RNA polymerase sigma factor OS=Synechoc... 236 3e-59
B8HPM3_CYAP4 (tr|B8HPM3) RNA polymerase sigma factor OS=Cyanothe... 235 3e-59
M0TES6_MUSAM (tr|M0TES6) Uncharacterized protein OS=Musa acumina... 235 3e-59
A2C0V5_PROM1 (tr|A2C0V5) RNA polymerase sigma factor OS=Prochlor... 235 3e-59
Q46GS6_PROMT (tr|Q46GS6) RNA polymerase sigma factor OS=Prochlor... 235 4e-59
G4FIM1_9SYNE (tr|G4FIM1) RNA polymerase sigma factor OS=Synechoc... 235 5e-59
K9YJV2_CYASC (tr|K9YJV2) RNA polymerase sigma factor OS=Cyanobac... 235 5e-59
M0TIC0_MUSAM (tr|M0TIC0) Uncharacterized protein OS=Musa acumina... 234 5e-59
Q2JT33_SYNJA (tr|Q2JT33) RNA polymerase sigma factor OS=Synechoc... 234 7e-59
A5GJC2_SYNPW (tr|A5GJC2) RNA polymerase sigma factor OS=Synechoc... 234 7e-59
B5ILG7_9CHRO (tr|B5ILG7) RNA polymerase sigma factor OS=Cyanobiu... 233 1e-58
A5GSD3_SYNR3 (tr|A5GSD3) RNA polymerase sigma factor OS=Synechoc... 233 1e-58
L8LPU5_9CHRO (tr|L8LPU5) RNA polymerase sigma factor OS=Gloeocap... 233 2e-58
L8M7W7_9CYAN (tr|L8M7W7) RNA polymerase sigma factor OS=Xenococc... 233 2e-58
Q0I8I7_SYNS3 (tr|Q0I8I7) RNA polymerase sigma factor OS=Synechoc... 233 2e-58
Q2JIA4_SYNJB (tr|Q2JIA4) RNA polymerase sigma factor OS=Synechoc... 233 2e-58
Q7V698_PROMM (tr|Q7V698) RNA polymerase sigma factor OS=Prochlor... 232 3e-58
K7W4G2_9NOST (tr|K7W4G2) RNA polymerase sigma factor OS=Anabaena... 232 3e-58
A0YTZ3_LYNSP (tr|A0YTZ3) RNA polymerase sigma factor OS=Lyngbya ... 232 4e-58
Q5N3Q1_SYNP6 (tr|Q5N3Q1) RNA polymerase sigma factor OS=Synechoc... 231 6e-58
A2C7M0_PROM3 (tr|A2C7M0) RNA polymerase sigma factor OS=Prochlor... 231 6e-58
K9SJF8_9CYAN (tr|K9SJF8) RNA polymerase sigma factor OS=Pseudana... 231 7e-58
H1WE70_9CYAN (tr|H1WE70) RNA polymerase sigma factor OS=Arthrosp... 231 9e-58
B5VWQ7_SPIMA (tr|B5VWQ7) RNA polymerase sigma factor OS=Arthrosp... 231 9e-58
K9EXS2_9CYAN (tr|K9EXS2) RNA polymerase sigma factor OS=Leptolyn... 231 9e-58
K1X4L7_SPIPL (tr|K1X4L7) RNA polymerase sigma factor OS=Arthrosp... 231 9e-58
Q31C37_PROM9 (tr|Q31C37) RNA polymerase sigma factor OS=Prochlor... 230 1e-57
K6DHZ3_SPIPL (tr|K6DHZ3) RNA polymerase sigma factor OS=Arthrosp... 230 1e-57
D5A0H0_SPIPL (tr|D5A0H0) RNA polymerase sigma factor OS=Arthrosp... 230 1e-57
Q7V2I0_PROMP (tr|Q7V2I0) RNA polymerase sigma factor OS=Prochlor... 230 1e-57
A9BEB7_PROM4 (tr|A9BEB7) RNA polymerase sigma factor OS=Prochlor... 230 1e-57
A2BVF8_PROM5 (tr|A2BVF8) RNA polymerase sigma factor OS=Prochlor... 230 1e-57
B9P0P2_PROMR (tr|B9P0P2) RNA polymerase sigma factor OS=Prochlor... 229 2e-57
B1X5Q2_PAUCH (tr|B1X5Q2) RNA polymerase sigma factor OS=Paulinel... 229 2e-57
R7QDV9_CHOCR (tr|R7QDV9) Stackhouse genomic scaffold, scaffold_2... 229 2e-57
A8G3L2_PROM2 (tr|A8G3L2) RNA polymerase sigma factor OS=Prochlor... 229 3e-57
A2BPX8_PROMS (tr|A2BPX8) RNA polymerase sigma factor OS=Prochlor... 229 3e-57
A3PBM1_PROM0 (tr|A3PBM1) RNA polymerase sigma factor OS=Prochlor... 229 3e-57
A9RG56_PHYPA (tr|A9RG56) Uncharacterized protein OS=Physcomitrel... 228 4e-57
F2HHX7_9CRYP (tr|F2HHX7) RNA-polymerase sigma factor OS=Cryptomo... 228 5e-57
K9RSJ7_SYNP3 (tr|K9RSJ7) RNA polymerase sigma factor OS=Synechoc... 228 5e-57
Q98RZ3_GUITH (tr|Q98RZ3) RNA-polymerase sigma factor OS=Guillard... 228 8e-57
A9BK56_HEMAN (tr|A9BK56) RpoD OS=Hemiselmis andersenii GN=HAN_1g... 226 2e-56
A3Z5L5_9SYNE (tr|A3Z5L5) RNA polymerase sigma factor OS=Synechoc... 226 2e-56
A4RYI5_OSTLU (tr|A4RYI5) Predicted protein OS=Ostreococcus lucim... 226 2e-56
K9P2V4_CYAGP (tr|K9P2V4) RNA polymerase sigma factor OS=Cyanobiu... 225 3e-56
Q8S9D0_GUITH (tr|Q8S9D0) RNA polymerase sigma factor OS=Guillard... 225 3e-56
Q05RP2_9SYNE (tr|Q05RP2) RNA polymerase sigma factor OS=Synechoc... 225 4e-56
Q8DL79_THEEB (tr|Q8DL79) RNA polymerase sigma factor OS=Thermosy... 225 4e-56
Q7VD88_PROMA (tr|Q7VD88) RNA polymerase sigma factor OS=Prochlor... 225 5e-56
L8NRV5_MICAE (tr|L8NRV5) RNA polymerase sigma factor OS=Microcys... 224 5e-56
A8YCV8_MICAE (tr|A8YCV8) RNA polymerase sigma factor OS=Microcys... 224 5e-56
J7G2H9_9CRYP (tr|J7G2H9) RNA-polymerase sigma factor OS=Chroomon... 224 5e-56
K9SYS4_9SYNE (tr|K9SYS4) RNA polymerase sigma factor OS=Synechoc... 224 6e-56
B0JU57_MICAN (tr|B0JU57) RNA polymerase sigma factor OS=Microcys... 224 7e-56
I4I0R7_MICAE (tr|I4I0R7) RNA polymerase sigma factor OS=Microcys... 224 7e-56
I4GQP9_MICAE (tr|I4GQP9) RNA polymerase sigma factor OS=Microcys... 224 7e-56
L8AT57_9SYNC (tr|L8AT57) RNA polymerase sigma factor OS=Synechoc... 224 8e-56
I4IWN2_MICAE (tr|I4IWN2) RNA polymerase sigma factor OS=Microcys... 224 8e-56
I4FPN8_MICAE (tr|I4FPN8) RNA polymerase sigma factor OS=Microcys... 224 9e-56
L7E8N7_MICAE (tr|L7E8N7) RNA polymerase sigma factor OS=Microcys... 224 9e-56
I4HMJ3_MICAE (tr|I4HMJ3) RNA polymerase sigma factor OS=Microcys... 224 9e-56
I4GJA8_MICAE (tr|I4GJA8) RNA polymerase sigma factor OS=Microcys... 224 9e-56
I4FIV5_MICAE (tr|I4FIV5) RNA polymerase sigma factor OS=Microcys... 224 9e-56
I4G7M0_MICAE (tr|I4G7M0) RNA polymerase sigma factor OS=Microcys... 224 1e-55
B8HQG4_CYAP4 (tr|B8HQG4) RNA polymerase sigma factor OS=Cyanothe... 224 1e-55
Q55525_SYNY3 (tr|Q55525) RNA polymerase sigma factor OS=Synechoc... 223 1e-55
F7URP3_SYNYG (tr|F7URP3) RNA polymerase sigma factor OS=Synechoc... 223 1e-55
M1MBB9_9SYNC (tr|M1MBB9) RNA polymerase sigma factor OS=Synechoc... 223 1e-55
H0PFH3_9SYNC (tr|H0PFH3) RNA polymerase sigma factor OS=Synechoc... 223 1e-55
H0PAJ0_9SYNC (tr|H0PAJ0) RNA polymerase sigma factor OS=Synechoc... 223 1e-55
H0NY38_9SYNC (tr|H0NY38) RNA polymerase sigma factor OS=Synechoc... 223 1e-55
I4H4V9_MICAE (tr|I4H4V9) RNA polymerase sigma factor OS=Microcys... 223 1e-55
A3IZB7_9CHRO (tr|A3IZB7) RNA polymerase sigma factor OS=Cyanothe... 223 1e-55
I4IFY1_9CHRO (tr|I4IFY1) RNA polymerase sigma factor OS=Microcys... 223 2e-55
B1WQ73_CYAA5 (tr|B1WQ73) RNA polymerase sigma factor OS=Cyanothe... 223 2e-55
G6GV95_9CHRO (tr|G6GV95) RNA polymerase sigma factor OS=Cyanothe... 223 2e-55
C1MUC7_MICPC (tr|C1MUC7) Predicted protein OS=Micromonas pusilla... 223 2e-55
D8FXC8_9CYAN (tr|D8FXC8) RNA polymerase sigma factor OS=Oscillat... 222 3e-55
K9VQV7_9CYAN (tr|K9VQV7) RNA polymerase sigma factor OS=Oscillat... 222 3e-55
F5UG18_9CYAN (tr|F5UG18) RNA polymerase sigma factor OS=Microcol... 222 3e-55
K9Z5T0_CYAAP (tr|K9Z5T0) RNA polymerase sigma factor OS=Cyanobac... 222 3e-55
D4TMC1_9NOST (tr|D4TMC1) RNA polymerase sigma factor OS=Raphidio... 221 5e-55
K9EWZ9_9CYAN (tr|K9EWZ9) RNA polymerase sigma factor OS=Leptolyn... 221 6e-55
Q4BYC5_CROWT (tr|Q4BYC5) RNA polymerase sigma factor OS=Crocosph... 221 7e-55
D4TH69_9NOST (tr|D4TH69) RNA polymerase sigma factor OS=Cylindro... 221 7e-55
Q7NHG5_GLOVI (tr|Q7NHG5) RNA polymerase sigma factor OS=Gloeobac... 221 8e-55
E0UE62_CYAP2 (tr|E0UE62) RNA polymerase sigma factor OS=Cyanothe... 220 1e-54
K9RCV1_9CYAN (tr|K9RCV1) RNA polymerase sigma factor OS=Rivulari... 220 1e-54
G5JAP6_CROWT (tr|G5JAP6) RNA polymerase sigma factor OS=Crocosph... 219 2e-54
Q017N3_OSTTA (tr|Q017N3) SigA (ISS) OS=Ostreococcus tauri GN=Ot0... 219 2e-54
L8LL46_9CHRO (tr|L8LL46) RNA polymerase sigma factor OS=Gloeocap... 219 2e-54
K9T8P2_9CYAN (tr|K9T8P2) RNA polymerase sigma factor OS=Pleuroca... 219 2e-54
K9SH00_9CYAN (tr|K9SH00) RNA polymerase sigma factor OS=Pseudana... 219 3e-54
A3YZH3_9SYNE (tr|A3YZH3) RNA polymerase sigma factor OS=Synechoc... 218 4e-54
B2J7M4_NOSP7 (tr|B2J7M4) RNA polymerase sigma factor OS=Nostoc p... 218 5e-54
L8KU07_9SYNC (tr|L8KU07) RNA polymerase sigma factor OS=Synechoc... 218 5e-54
L8M4M2_9CYAN (tr|L8M4M2) RNA polymerase sigma factor OS=Xenococc... 218 6e-54
K9U8Z9_9CYAN (tr|K9U8Z9) RNA polymerase sigma factor OS=Chroococ... 218 6e-54
A0YXP5_LYNSP (tr|A0YXP5) RNA polymerase sigma factor OS=Lyngbya ... 218 7e-54
I4GV22_MICAE (tr|I4GV22) RNA polymerase sigma factor OS=Microcys... 218 7e-54
K9TQ38_9CYAN (tr|K9TQ38) RNA polymerase sigma factor OS=Oscillat... 217 8e-54
C7QM79_CYAP0 (tr|C7QM79) RNA polymerase sigma factor OS=Cyanothe... 217 8e-54
K9YNZ9_CYASC (tr|K9YNZ9) RNA polymerase sigma factor OS=Cyanobac... 217 8e-54
H1WB17_9CYAN (tr|H1WB17) RNA polymerase sigma factor OS=Arthrosp... 217 1e-53
K9V799_9CYAN (tr|K9V799) RNA polymerase sigma factor OS=Calothri... 217 1e-53
K9ZCE5_ANACC (tr|K9ZCE5) RNA polymerase sigma factor OS=Anabaena... 217 1e-53
I4IAI2_9CHRO (tr|I4IAI2) RNA polymerase sigma factor OS=Microcys... 217 1e-53
M0XE63_HORVD (tr|M0XE63) Uncharacterized protein OS=Hordeum vulg... 217 1e-53
I4FLI6_MICAE (tr|I4FLI6) RNA polymerase sigma factor OS=Microcys... 216 1e-53
I4IUY9_MICAE (tr|I4IUY9) RNA polymerase sigma factor OS=Microcys... 216 1e-53
B2IZR4_NOSP7 (tr|B2IZR4) RNA polymerase sigma factor OS=Nostoc p... 216 1e-53
M0XE64_HORVD (tr|M0XE64) Uncharacterized protein OS=Hordeum vulg... 216 1e-53
I4HZ12_MICAE (tr|I4HZ12) RNA polymerase sigma factor OS=Microcys... 216 2e-53
I4GN30_MICAE (tr|I4GN30) RNA polymerase sigma factor OS=Microcys... 216 2e-53
I4GB76_MICAE (tr|I4GB76) RNA polymerase sigma factor OS=Microcys... 216 2e-53
I4FFA4_MICAE (tr|I4FFA4) RNA polymerase sigma factor OS=Microcys... 216 2e-53
B1PVV9_MICAE (tr|B1PVV9) RNA polymerase sigma factor OS=Microcys... 216 2e-53
B7K8N4_CYAP7 (tr|B7K8N4) RNA polymerase sigma factor OS=Cyanothe... 216 2e-53
K1VQH8_SPIPL (tr|K1VQH8) RNA polymerase sigma factor OS=Arthrosp... 216 2e-53
I4H3L6_MICAE (tr|I4H3L6) RNA polymerase sigma factor OS=Microcys... 216 2e-53
A8YBI5_MICAE (tr|A8YBI5) RNA polymerase sigma factor OS=Microcys... 216 2e-53
B0JGK3_MICAN (tr|B0JGK3) RNA polymerase sigma factor OS=Microcys... 216 2e-53
I4HLE0_MICAE (tr|I4HLE0) RNA polymerase sigma factor OS=Microcys... 216 2e-53
B1WS32_CYAA5 (tr|B1WS32) RNA polymerase sigma factor OS=Cyanothe... 216 2e-53
G6GVW3_9CHRO (tr|G6GVW3) RNA polymerase sigma factor OS=Cyanothe... 216 2e-53
B0C249_ACAM1 (tr|B0C249) RNA polymerase sigma factor OS=Acaryoch... 216 2e-53
L8N2V5_9CYAN (tr|L8N2V5) RNA polymerase sigma factor OS=Pseudana... 216 2e-53
B7K407_CYAP8 (tr|B7K407) RNA polymerase sigma factor OS=Cyanothe... 216 3e-53
K9TEU2_9CYAN (tr|K9TEU2) RNA polymerase sigma factor, cyanobacte... 215 3e-53
K7WMI0_9NOST (tr|K7WMI0) RNA polymerase sigma factor OS=Anabaena... 215 4e-53
B4WG00_9SYNE (tr|B4WG00) RNA polymerase sigma factor OS=Synechoc... 215 4e-53
G6FPH6_9CYAN (tr|G6FPH6) RNA polymerase sigma factor OS=Fischere... 215 4e-53
A3ISY9_9CHRO (tr|A3ISY9) RNA polymerase sigma factor OS=Cyanothe... 215 5e-53
K9WSJ0_9NOST (tr|K9WSJ0) RNA polymerase sigma factor OS=Cylindro... 215 5e-53
C7QVB1_CYAP0 (tr|C7QVB1) RNA polymerase, sigma 70 subunit, RpoD ... 214 6e-53
B7JX54_CYAP8 (tr|B7JX54) RNA polymerase, sigma 70 subunit, RpoD ... 214 6e-53
K9SDK2_9CYAN (tr|K9SDK2) RNA polymerase sigma factor OS=Geitleri... 214 6e-53
B5W8F6_SPIMA (tr|B5W8F6) RNA polymerase sigma factor OS=Arthrosp... 214 6e-53
B2IZW2_NOSP7 (tr|B2IZW2) RNA polymerase sigma factor OS=Nostoc p... 214 6e-53
M8AUB6_AEGTA (tr|M8AUB6) RNA polymerase sigma factor rpoD OS=Aeg... 214 6e-53
L8N838_9CYAN (tr|L8N838) RNA polymerase sigma factor OS=Pseudana... 214 7e-53
K9Q859_9NOSO (tr|K9Q859) RNA polymerase sigma factor OS=Nostoc s... 214 7e-53
K9XM05_9CHRO (tr|K9XM05) RNA polymerase, sigma 70 subunit, RpoD ... 214 8e-53
B1XKF5_SYNP2 (tr|B1XKF5) RNA polymerase sigma factor OS=Synechoc... 214 8e-53
A0ZN70_NODSP (tr|A0ZN70) RNA polymerase sigma factor OS=Nodulari... 214 8e-53
Q8DM59_THEEB (tr|Q8DM59) Group2 RNA polymerase sigma factor OS=T... 214 9e-53
K9XMI4_STAC7 (tr|K9XMI4) RNA polymerase sigma factor OS=Stanieri... 214 9e-53
K9TZY6_9CYAN (tr|K9TZY6) RNA polymerase sigma factor OS=Chroococ... 214 9e-53
Q4C7J7_CROWT (tr|Q4C7J7) RNA polymerase sigma factor OS=Crocosph... 214 1e-52
G5JAB0_CROWT (tr|G5JAB0) RNA polymerase sigma factor OS=Crocosph... 214 1e-52
K6DZP2_SPIPL (tr|K6DZP2) RNA polymerase sigma factor OS=Arthrosp... 214 1e-52
D5A2C0_SPIPL (tr|D5A2C0) RNA polymerase sigma factor OS=Arthrosp... 214 1e-52
Q7NEW6_GLOVI (tr|Q7NEW6) RNA polymerase sigma factor OS=Gloeobac... 213 2e-52
K9SR03_9SYNE (tr|K9SR03) RNA polymerase sigma factor OS=Synechoc... 213 2e-52
A3AGH1_ORYSJ (tr|A3AGH1) Putative uncharacterized protein OS=Ory... 213 2e-52
Q84Q84_ORYSJ (tr|Q84Q84) Os03g0271100 protein OS=Oryza sativa su... 213 2e-52
Q10XF4_TRIEI (tr|Q10XF4) RNA polymerase, sigma 28 subunit OS=Tri... 213 2e-52
K9RTH4_SYNP3 (tr|K9RTH4) RNA polymerase sigma factor, cyanobacte... 213 2e-52
I4IAS0_9CHRO (tr|I4IAS0) RNA polymerase sigma factor rpoD3 OS=Mi... 213 2e-52
I1P9X2_ORYGL (tr|I1P9X2) Uncharacterized protein OS=Oryza glaber... 212 3e-52
K9XK63_9CHRO (tr|K9XK63) RNA polymerase sigma factor OS=Gloeocap... 212 3e-52
J3LME6_ORYBR (tr|J3LME6) Uncharacterized protein OS=Oryza brachy... 212 3e-52
K9Y6K9_HALP7 (tr|K9Y6K9) RNA polymerase sigma factor OS=Halothec... 212 3e-52
Q117X0_TRIEI (tr|Q117X0) RNA polymerase sigma factor OS=Trichode... 212 3e-52
B8C130_THAPS (tr|B8C130) RNA polymerase (Fragment) OS=Thalassios... 212 3e-52
D8G620_9CYAN (tr|D8G620) RNA polymerase sigma factor SigD OS=Osc... 212 3e-52
K9RZ35_SYNP3 (tr|K9RZ35) RNA polymerase sigma factor OS=Synechoc... 212 3e-52
Q2JS52_SYNJA (tr|Q2JS52) RNA polymerase sigma factor OS=Synechoc... 212 4e-52
K9QUH7_NOSS7 (tr|K9QUH7) RNA polymerase sigma factor OS=Nostoc s... 212 4e-52
B1XQ38_SYNP2 (tr|B1XQ38) Sigma factor OS=Synechococcus sp. (stra... 212 4e-52
K9PTA0_9CYAN (tr|K9PTA0) RNA polymerase sigma factor OS=Calothri... 212 4e-52
Q10NF3_ORYSJ (tr|Q10NF3) Sigma-70 region 3 family protein, expre... 211 5e-52
K9EMY3_9CYAN (tr|K9EMY3) RNA polymerase sigma factor, cyanobacte... 211 7e-52
D7E4D5_NOSA0 (tr|D7E4D5) RNA polymerase sigma factor OS=Nostoc a... 211 7e-52
A2XF08_ORYSI (tr|A2XF08) Putative uncharacterized protein OS=Ory... 211 8e-52
F2CZB8_HORVD (tr|F2CZB8) Predicted protein OS=Hordeum vulgare va... 211 8e-52
I1H713_BRADI (tr|I1H713) Uncharacterized protein OS=Brachypodium... 210 1e-51
E0UIU1_CYAP2 (tr|E0UIU1) RNA polymerase, sigma 70 subunit, RpoD ... 210 1e-51
I4HQ77_MICAE (tr|I4HQ77) RNA polymerase sigma factor rpoD3 OS=Mi... 210 1e-51
I4FRP5_MICAE (tr|I4FRP5) RNA polymerase sigma factor rpoD3 OS=Mi... 210 1e-51
K9XV83_STAC7 (tr|K9XV83) RNA polymerase, sigma 70 subunit, RpoD ... 210 1e-51
F7ULM9_SYNYG (tr|F7ULM9) RNA polymerase sigma factor OS=Synechoc... 210 1e-51
M1MNH4_9SYNC (tr|M1MNH4) RNA polymerase sigma factor OS=Synechoc... 210 1e-51
H0PJ89_9SYNC (tr|H0PJ89) RNA polymerase sigma factor OS=Synechoc... 210 1e-51
H0PED4_9SYNC (tr|H0PED4) RNA polymerase sigma factor OS=Synechoc... 210 1e-51
H0P220_9SYNC (tr|H0P220) RNA polymerase sigma factor OS=Synechoc... 210 1e-51
A0ZFS4_NODSP (tr|A0ZFS4) RNA polymerase sigma factor OS=Nodulari... 210 1e-51
D3EMZ4_UCYNA (tr|D3EMZ4) RNA polymerase sigma factor OS=cyanobac... 210 1e-51
A4CX44_SYNPV (tr|A4CX44) RNA polymerase sigma factor OS=Synechoc... 209 2e-51
Q2JJL6_SYNJB (tr|Q2JJL6) RNA polymerase sigma factor OS=Synechoc... 209 2e-51
I1ILU6_BRADI (tr|I1ILU6) Uncharacterized protein OS=Brachypodium... 209 2e-51
K9QQ38_NOSS7 (tr|K9QQ38) RNA polymerase sigma factor OS=Nostoc s... 209 2e-51
Q7XXT0_ORYSJ (tr|Q7XXT0) Plastid sigma factor 2A OS=Oryza sativa... 209 3e-51
Q9KHE5_NOSS1 (tr|Q9KHE5) RNA polymerase sigma factor OS=Nostoc s... 209 3e-51
B8AUZ3_ORYSI (tr|B8AUZ3) Putative uncharacterized protein OS=Ory... 209 3e-51
Q53JE7_ORYSJ (tr|Q53JE7) Sigma-70 region 3, putative OS=Oryza sa... 209 3e-51
Q53KH8_ORYSJ (tr|Q53KH8) Os11g0448400 protein OS=Oryza sativa su... 209 3e-51
Q3MBV9_ANAVT (tr|Q3MBV9) RNA polymerase sigma factor OS=Anabaena... 209 3e-51
I1QZW7_ORYGL (tr|I1QZW7) Uncharacterized protein OS=Oryza glaber... 209 3e-51
K9U2G0_9CYAN (tr|K9U2G0) RNA polymerase, sigma 70 subunit, RpoD ... 209 4e-51
K9V798_9CYAN (tr|K9V798) RNA polymerase, sigma 70 subunit, RpoD ... 208 4e-51
B4W0H2_9CYAN (tr|B4W0H2) RNA polymerase sigma factor OS=Coleofas... 208 4e-51
Q3MBX2_ANAVT (tr|Q3MBX2) Sigma 28 (Flagella/Sporulation) OS=Anab... 208 5e-51
B2J979_NOSP7 (tr|B2J979) RNA polymerase, sigma 70 subunit, RpoD ... 208 5e-51
B4WSK5_9SYNE (tr|B4WSK5) RNA polymerase sigma factor, cyanobacte... 208 5e-51
I4GS23_MICAE (tr|I4GS23) RNA polymerase sigma factor rpoD3 OS=Mi... 208 5e-51
P96032_SYNSP (tr|P96032) RNA polymerase sigma factor OS=Synechoc... 208 6e-51
J3N844_ORYBR (tr|J3N844) Uncharacterized protein OS=Oryza brachy... 207 7e-51
I4H5M1_MICAE (tr|I4H5M1) RNA polymerase sigma factor rpoD3 OS=Mi... 207 8e-51
Q8S9C8_CYAPA (tr|Q8S9C8) RNA polymerase sigma factor OS=Cyanopho... 207 8e-51
P96034_SYNSP (tr|P96034) Sigma factor OS=Synechococcus sp. GN=si... 207 9e-51
Q9KHE8_NOSS1 (tr|Q9KHE8) Group 2 sigma 70-type sigma factor D OS... 207 9e-51
K4A8A6_SETIT (tr|K4A8A6) Uncharacterized protein OS=Setaria ital... 207 1e-50
I4G0I4_MICAE (tr|I4G0I4) RNA polymerase sigma factor rpoD3 OS=Mi... 207 1e-50
L8NM63_MICAE (tr|L8NM63) RNA polymerase sigma factor rpoD2 OS=Mi... 207 1e-50
A8YAB5_MICAE (tr|A8YAB5) Genome sequencing data, contig C249 OS=... 207 1e-50
Q05V50_9SYNE (tr|Q05V50) RNA polymerase sigma factor OS=Synechoc... 207 1e-50
K9UHM5_9CHRO (tr|K9UHM5) RNA polymerase sigma factor, cyanobacte... 207 1e-50
K9QHM1_9NOSO (tr|K9QHM1) RNA polymerase, sigma 70 subunit, RpoD ... 207 1e-50
K2A8X5_9BACT (tr|K2A8X5) RNA polymerase sigma factor OS=uncultur... 207 1e-50
K9S928_9CYAN (tr|K9S928) RNA polymerase sigma factor OS=Geitleri... 207 1e-50
K8F5W9_9CHLO (tr|K8F5W9) RNA polymerase sigma factor RpoD OS=Bat... 207 1e-50
I4ISK0_MICAE (tr|I4ISK0) RNA polymerase sigma factor rpoD3 OS=Mi... 206 1e-50
K9X9V9_9CHRO (tr|K9X9V9) RNA polymerase sigma factor OS=Gloeocap... 206 2e-50
K9X3C6_9NOST (tr|K9X3C6) RNA polymerase sigma factor, cyanobacte... 206 2e-50
Q8DKM8_THEEB (tr|Q8DKM8) RNA polymerase sigma factor OS=Thermosy... 206 2e-50
A0YTG7_LYNSP (tr|A0YTG7) RNA polymerase sigma factor OS=Lyngbya ... 206 2e-50
L7E3E5_MICAE (tr|L7E3E5) RNA polymerase sigma factor OS=Microcys... 206 2e-50
I4GLZ5_MICAE (tr|I4GLZ5) RNA polymerase sigma factor rpoD3 OS=Mi... 206 2e-50
I4FIK9_MICAE (tr|I4FIK9) RNA polymerase sigma factor rpoD3 OS=Mi... 206 2e-50
C5WQ19_SORBI (tr|C5WQ19) Putative uncharacterized protein Sb01g0... 206 2e-50
L8L915_9CYAN (tr|L8L915) RNA polymerase sigma factor, cyanobacte... 206 2e-50
K8GCA2_9CYAN (tr|K8GCA2) RNA polymerase sigma factor, cyanobacte... 206 2e-50
Q39515_CYACA (tr|Q39515) Chloroplast RNA polymerase sigma subuni... 206 2e-50
L8LWE0_9CYAN (tr|L8LWE0) RNA polymerase sigma factor, cyanobacte... 206 2e-50
K9PYY3_9CYAN (tr|K9PYY3) RNA polymerase, sigma 70 subunit, RpoD ... 206 3e-50
K7UQN4_MAIZE (tr|K7UQN4) Sigma factor SIG2A OS=Zea mays GN=ZEAMM... 206 3e-50
K7WX98_9NOST (tr|K7WX98) RpoD family RNA polymerase sigma subuni... 206 3e-50
K9WNS7_9CYAN (tr|K9WNS7) RNA polymerase sigma factor, cyanobacte... 205 3e-50
K9ZFX7_ANACC (tr|K9ZFX7) RNA polymerase, sigma 70 subunit, RpoD ... 205 3e-50
B7KAB6_CYAP7 (tr|B7KAB6) RNA polymerase, sigma 70 subunit, RpoD ... 205 3e-50
Q9ZPL2_MAIZE (tr|Q9ZPL2) Sigma factor SIG2A OS=Zea mays GN=sig2A... 205 3e-50
K9RA84_9CYAN (tr|K9RA84) RNA polymerase sigma factor OS=Rivulari... 205 4e-50
B0JTP4_MICAN (tr|B0JTP4) Group 2 RNA polymerase sigma factor OS=... 205 4e-50
H1WGX8_9CYAN (tr|H1WGX8) Group 2 RNA polymerase sigma factor Sig... 205 4e-50
K9W3C4_9CYAN (tr|K9W3C4) RNA polymerase sigma factor OS=Crinaliu... 205 4e-50
F4Y0Z1_9CYAN (tr|F4Y0Z1) Putative RNA polymerase sigma factor OS... 205 4e-50
D4TFM7_9NOST (tr|D4TFM7) SigD (Sigma 28 (Flagella/spoulation)) O... 205 4e-50
K9QYS3_NOSS7 (tr|K9QYS3) RNA polymerase sigma factor, cyanobacte... 205 5e-50
K9YIA7_CYASC (tr|K9YIA7) RNA polymerase, sigma 70 subunit, RpoD ... 205 5e-50
D7E0T9_NOSA0 (tr|D7E0T9) RNA polymerase, sigma 70 subunit, RpoD ... 205 5e-50
Q5N3S3_SYNP6 (tr|Q5N3S3) Group2 RNA polymerase sigma factor RpoD... 205 5e-50
C1E4E8_MICSR (tr|C1E4E8) Predicted protein OS=Micromonas sp. (st... 204 5e-50
F5UJ50_9CYAN (tr|F5UJ50) RNA polymerase, sigma 70 subunit, RpoD ... 204 6e-50
K9SD40_9CYAN (tr|K9SD40) RNA polymerase sigma factor OS=Geitleri... 204 7e-50
K9VD31_9CYAN (tr|K9VD31) RNA polymerase, sigma 70 subunit, RpoD ... 204 7e-50
K9R523_9CYAN (tr|K9R523) RNA polymerase sigma factor, cyanobacte... 204 8e-50
I4I200_MICAE (tr|I4I200) RNA polymerase sigma factor rpoD3 OS=Mi... 204 8e-50
L8L7Y4_9CYAN (tr|L8L7Y4) RNA polymerase sigma factor OS=Leptolyn... 204 9e-50
R5D398_9FIRM (tr|R5D398) RNA polymerase sigma factor OS=Firmicut... 204 9e-50
D4TSS7_9NOST (tr|D4TSS7) RNA polymerase sigma factor OS=Raphidio... 204 1e-49
Q9R5W0_STRGR (tr|Q9R5W0) RNA polymerase sigma factor OS=Streptom... 204 1e-49
K1VAT7_9ACTO (tr|K1VAT7) RNA polymerase sigma factor (Precursor)... 204 1e-49
Q5MZI5_SYNP6 (tr|Q5MZI5) Group2 RNA polymerase sigma factor RpoD... 204 1e-49
G6FRT8_9CYAN (tr|G6FRT8) RNA polymerase, sigma 70 subunit, RpoD ... 204 1e-49
D4TGH9_9NOST (tr|D4TGH9) RNA polymerase sigma factor OS=Cylindro... 203 1e-49
K9QHC9_9NOSO (tr|K9QHC9) RNA polymerase sigma factor OS=Nostoc s... 203 1e-49
K1VW29_SPIPL (tr|K1VW29) RNA polymerase sigma 70 subunit RpoD fa... 203 2e-49
B5VZJ5_SPIMA (tr|B5VZJ5) RNA polymerase, sigma 70 subunit, RpoD ... 203 2e-49
L8L758_9CYAN (tr|L8L758) RNA polymerase sigma factor OS=Leptolyn... 203 2e-49
K9Z739_CYAAP (tr|K9Z739) RNA polymerase, sigma 70 subunit, RpoD ... 202 3e-49
K9PG81_9CYAN (tr|K9PG81) RNA polymerase, sigma 70 subunit, RpoD ... 202 3e-49
B0BZB6_ACAM1 (tr|B0BZB6) RNA polymerase sigma-70 factor OS=Acary... 202 3e-49
B8HR54_CYAP4 (tr|B8HR54) RNA polymerase, sigma 70 subunit, RpoD ... 202 3e-49
Q7UA00_SYNPX (tr|Q7UA00) RNA polymerase sigma factor OS=Synechoc... 202 3e-49
L8L7S5_9CYAN (tr|L8L7S5) RNA polymerase sigma factor OS=Leptolyn... 202 3e-49
D6AZ79_9ACTO (tr|D6AZ79) RNA polymerase sigma factor OS=Streptom... 202 3e-49
K6E178_SPIPL (tr|K6E178) RNA polymerase sigma factor SigD OS=Art... 202 3e-49
K9Q8B2_9NOSO (tr|K9Q8B2) RNA polymerase sigma factor OS=Nostoc s... 201 5e-49
A9B4B0_HERA2 (tr|A9B4B0) RNA polymerase sigma factor OS=Herpetos... 201 5e-49
G6FXB6_9CYAN (tr|G6FXB6) RNA polymerase sigma factor OS=Fischere... 201 5e-49
F1DJX7_MAIZE (tr|F1DJX7) SIGMA70-like transcription factor (Frag... 201 6e-49
K3ZHZ3_SETIT (tr|K3ZHZ3) Uncharacterized protein OS=Setaria ital... 201 6e-49
Q7NKZ2_GLOVI (tr|Q7NKZ2) RNA polymerase sigma factor OS=Gloeobac... 201 6e-49
D5ZJN1_MYCTU (tr|D5ZJN1) RNA polymerase sigma factor OS=Mycobact... 201 6e-49
M9SSP4_9ACTO (tr|M9SSP4) RNA polymerase, sigma 70 subunit, RpoD ... 201 6e-49
K9V3Z1_9CYAN (tr|K9V3Z1) RNA polymerase sigma factor OS=Calothri... 201 6e-49
K9UA01_9CYAN (tr|K9UA01) RNA polymerase sigma factor OS=Chroococ... 201 8e-49
K8GTQ7_9CYAN (tr|K8GTQ7) RNA polymerase sigma factor OS=Oscillat... 201 8e-49
K9ZHT8_ANACC (tr|K9ZHT8) RNA polymerase sigma factor OS=Anabaena... 201 9e-49
R6TIZ6_9STAP (tr|R6TIZ6) RNA polymerase sigma factor OS=Staphylo... 201 9e-49
Q9S5K3_MYCLR (tr|Q9S5K3) RNA polymerase sigma factor OS=Mycobact... 201 9e-49
B7K8M9_CYAP7 (tr|B7K8M9) RNA polymerase sigma factor OS=Cyanothe... 201 9e-49
Q7AQB1_MYCLE (tr|Q7AQB1) RNA polymerase sigma factor OS=Mycobact... 201 1e-48
B8ZQV8_MYCLB (tr|B8ZQV8) RNA polymerase sigma factor OS=Mycobact... 201 1e-48
Q59532_MYCLR (tr|Q59532) RNA polymerase sigma factor OS=Mycobact... 201 1e-48
K9R7J2_9CYAN (tr|K9R7J2) RNA polymerase sigma factor OS=Rivulari... 201 1e-48
K9X1J5_9NOST (tr|K9X1J5) RNA polymerase sigma factor OS=Cylindro... 200 1e-48
R7QJX2_CHOCR (tr|R7QJX2) Stackhouse genomic scaffold, scaffold_3... 200 1e-48
D4TPM4_9NOST (tr|D4TPM4) SigD (Sigma 28 (Flagella/spoulation)) O... 200 1e-48
A3YWT8_9SYNE (tr|A3YWT8) RNA polymerase sigma factor OS=Synechoc... 200 1e-48
R5SI72_9GAMM (tr|R5SI72) RNA polymerase sigma factor OS=Acinetob... 200 1e-48
K3ZHZ1_SETIT (tr|K3ZHZ1) Uncharacterized protein OS=Setaria ital... 200 1e-48
B0C890_ACAM1 (tr|B0C890) RNA polymerase sigma-70 factor OS=Acary... 200 1e-48
K9Z0B1_CYAAP (tr|K9Z0B1) RNA polymerase sigma factor OS=Cyanobac... 200 1e-48
Q9ZPL1_MAIZE (tr|Q9ZPL1) Sigma factor SIG2B OS=Zea mays GN=sig2B... 200 1e-48
M0XE65_HORVD (tr|M0XE65) Uncharacterized protein (Fragment) OS=H... 200 1e-48
D4ZXY7_SPIPL (tr|D4ZXY7) Group 2 RNA polymerase sigma factor Sig... 200 2e-48
K9YVJ3_DACSA (tr|K9YVJ3) RNA polymerase sigma factor OS=Dactyloc... 200 2e-48
A5GPM0_SYNPW (tr|A5GPM0) RNA polymerase sigma factor OS=Synechoc... 200 2e-48
Q46II1_PROMT (tr|Q46II1) RNA polymerase sigma factor OS=Prochlor... 199 2e-48
K8GMJ3_9CYAN (tr|K8GMJ3) RNA polymerase sigma factor OS=Oscillat... 199 2e-48
A9BD74_PROM4 (tr|A9BD74) RNA polymerase sigma factor OS=Prochlor... 199 2e-48
K9PW99_9CYAN (tr|K9PW99) RNA polymerase sigma factor OS=Leptolyn... 199 2e-48
D6AUS5_STRFL (tr|D6AUS5) RNA polymerase sigma factor OS=Streptom... 199 2e-48
M0SK23_MUSAM (tr|M0SK23) Uncharacterized protein OS=Musa acumina... 199 2e-48
A2C578_PROM1 (tr|A2C578) RNA polymerase sigma factor OS=Prochlor... 199 2e-48
C6W8L5_ACTMD (tr|C6W8L5) RNA polymerase sigma factor OS=Actinosy... 199 2e-48
A4CYD7_SYNPV (tr|A4CYD7) RNA polymerase sigma factor OS=Synechoc... 199 2e-48
K9WHH1_9CYAN (tr|K9WHH1) RNA polymerase sigma factor OS=Microcol... 199 2e-48
K9W422_9CYAN (tr|K9W422) RNA polymerase, sigma 70 subunit, RpoD ... 199 3e-48
K9UFK2_9CHRO (tr|K9UFK2) RNA polymerase sigma factor OS=Chamaesi... 199 3e-48
F9DNC2_9BACL (tr|F9DNC2) RNA polymerase sigma factor OS=Sporosar... 199 3e-48
B4VTM7_9CYAN (tr|B4VTM7) RNA polymerase sigma factor, cyanobacte... 199 3e-48
A3Z449_9SYNE (tr|A3Z449) RNA polymerase sigma factor OS=Synechoc... 199 3e-48
B1XNJ6_SYNP2 (tr|B1XNJ6) RNA polymerase sigma factor OS=Synechoc... 199 3e-48
R5H7U6_9FIRM (tr|R5H7U6) RNA polymerase sigma factor OS=Firmicut... 199 3e-48
P96033_SYNSP (tr|P96033) RNA polymerase sigma factor OS=Synechoc... 199 3e-48
Q8KUI1_ACTPA (tr|Q8KUI1) RNA polymerase sigma factor OS=Actinosy... 199 3e-48
Q0I680_SYNS3 (tr|Q0I680) RNA polymerase sigma factor OS=Synechoc... 199 3e-48
K9XFP7_9CHRO (tr|K9XFP7) RNA polymerase sigma factor OS=Gloeocap... 199 3e-48
K9PLW5_9CYAN (tr|K9PLW5) RNA polymerase sigma factor OS=Calothri... 199 3e-48
R8W2M7_9CLOT (tr|R8W2M7) RNA polymerase sigma factor RpoD OS=But... 199 4e-48
R6PFH1_9CLOT (tr|R6PFH1) RNA polymerase sigma factor OS=Clostrid... 198 4e-48
Q7V934_PROMM (tr|Q7V934) RNA polymerase sigma factor OS=Prochlor... 198 4e-48
L8KRC6_9MYCO (tr|L8KRC6) RNA polymerase sigma factor OS=Mycobact... 198 4e-48
I2AGG4_9MYCO (tr|I2AGG4) RNA polymerase sigma factor OS=Mycobact... 198 4e-48
H8IVW9_MYCIA (tr|H8IVW9) RNA polymerase sigma factor OS=Mycobact... 198 5e-48
J9WLP0_9MYCO (tr|J9WLP0) RNA polymerase sigma factor OS=Mycobact... 198 5e-48
H8JJX7_MYCIT (tr|H8JJX7) RNA polymerase sigma factor OS=Mycobact... 198 5e-48
H8J5U5_MYCIT (tr|H8J5U5) RNA polymerase sigma factor OS=Mycobact... 198 5e-48
Q3ANG0_SYNSC (tr|Q3ANG0) RNA polymerase sigma factor OS=Synechoc... 198 5e-48
A5JEM2_9STRA (tr|A5JEM2) Chloroplast RNA-polymerase sigma factor... 198 5e-48
B1VYB1_STRGG (tr|B1VYB1) RNA polymerase sigma factor OS=Streptom... 198 6e-48
G0PSX4_STRGR (tr|G0PSX4) RNA polymerase sigma factor OS=Streptom... 198 6e-48
F4XU70_9CYAN (tr|F4XU70) RNA polymerase sigma factor OS=Moorea p... 198 6e-48
B1LBI9_THESQ (tr|B1LBI9) RNA polymerase sigma factor OS=Thermoto... 198 6e-48
A5IMD4_THEP1 (tr|A5IMD4) RNA polymerase sigma factor OS=Thermoto... 198 6e-48
L0QY54_9MYCO (tr|L0QY54) RNA polymerase sigma factor OS=Mycobact... 198 6e-48
K9RA04_9CYAN (tr|K9RA04) RNA polymerase sigma factor OS=Rivulari... 198 6e-48
Q05UJ7_9SYNE (tr|Q05UJ7) RNA polymerase sigma factor OS=Synechoc... 198 6e-48
D8UF26_VOLCA (tr|D8UF26) Putative uncharacterized protein OS=Vol... 198 6e-48
M1WYW2_9NOST (tr|M1WYW2) RNA polymerase sigma factor OS=Richelia... 198 6e-48
L0QM92_9MYCO (tr|L0QM92) RNA polymerase sigma factor OS=Mycobact... 197 6e-48
Q3B0L4_SYNS9 (tr|Q3B0L4) RNA polymerase sigma factor OS=Synechoc... 197 7e-48
B4WJR0_9SYNE (tr|B4WJR0) RNA polymerase sigma factor OS=Synechoc... 197 7e-48
Q60158_MYCBI (tr|Q60158) RNA polymerase sigma factor OS=Mycobact... 197 7e-48
D2C3Z1_THENR (tr|D2C3Z1) RNA polymerase sigma factor OS=Thermoto... 197 7e-48
Q062S3_9SYNE (tr|Q062S3) RNA polymerase sigma factor OS=Synechoc... 197 7e-48
L0PZZ3_9MYCO (tr|L0PZZ3) RNA polymerase sigma factor OS=Mycobact... 197 7e-48
H8EV48_MYCTE (tr|H8EV48) RNA polymerase sigma factor OS=Mycobact... 197 7e-48
E9ZMD5_MYCTU (tr|E9ZMD5) RNA polymerase sigma factor OS=Mycobact... 197 7e-48
E2WKJ1_MYCTU (tr|E2WKJ1) RNA polymerase sigma factor OS=Mycobact... 197 7e-48
E2VX99_MYCTU (tr|E2VX99) RNA polymerase sigma factor OS=Mycobact... 197 7e-48
E2TPP8_MYCTU (tr|E2TPP8) RNA polymerase sigma factor OS=Mycobact... 197 7e-48
G0TQT4_MYCCP (tr|G0TQT4) RNA polymerase sigma factor OS=Mycobact... 197 7e-48
F7WWV0_MYCTD (tr|F7WWV0) RNA polymerase sigma factor OS=Mycobact... 197 7e-48
F7WHQ3_MYCTC (tr|F7WHQ3) RNA polymerase sigma factor OS=Mycobact... 197 7e-48
C6DLK4_MYCTK (tr|C6DLK4) RNA polymerase sigma factor OS=Mycobact... 197 7e-48
C1AFG2_MYCBT (tr|C1AFG2) RNA polymerase sigma factor OS=Mycobact... 197 7e-48
A5WQV6_MYCTF (tr|A5WQV6) RNA polymerase sigma factor OS=Mycobact... 197 7e-48
A5U655_MYCTA (tr|A5U655) RNA polymerase sigma factor OS=Mycobact... 197 7e-48
A1KM41_MYCBP (tr|A1KM41) RNA polymerase sigma factor OS=Mycobact... 197 7e-48
R4MXJ8_MYCTU (tr|R4MXJ8) RNA polymerase sigma factor OS=Mycobact... 197 7e-48
M9URZ7_MYCTU (tr|M9URZ7) RNA polymerase sigma factor OS=Mycobact... 197 7e-48
M8CBG1_9MYCO (tr|M8CBG1) RNA polymerase sigma factor OS=Mycobact... 197 7e-48
M1IYT0_MYCBI (tr|M1IYT0) RNA polymerase sigma factor OS=Mycobact... 197 7e-48
L0NW65_MYCTU (tr|L0NW65) RNA polymerase sigma factor OS=Mycobact... 197 7e-48
J9H086_9THEM (tr|J9H086) RNA polymerase sigma factor OS=Thermoto... 197 7e-48
I6X558_MYCTU (tr|I6X558) RNA polymerase sigma factor OS=Mycobact... 197 7e-48
I6R069_MYCTU (tr|I6R069) RNA polymerase sigma factor OS=Mycobact... 197 7e-48
H8HSC0_MYCTU (tr|H8HSC0) RNA polymerase sigma factor OS=Mycobact... 197 7e-48
H6SFI3_MYCTU (tr|H6SFI3) RNA polymerase sigma factor OS=Mycobact... 197 7e-48
G7QSM2_MYCBI (tr|G7QSM2) RNA polymerase sigma factor OS=Mycobact... 197 7e-48
G4FFI6_THEMA (tr|G4FFI6) RNA polymerase sigma factor OS=Thermoto... 197 7e-48
G2UT65_MYCTU (tr|G2UT65) RNA polymerase sigma factor OS=Mycobact... 197 7e-48
G2N191_MYCTU (tr|G2N191) RNA polymerase sigma factor OS=Mycobact... 197 7e-48
>I1LZ84_SOYBN (tr|I1LZ84) Uncharacterized protein OS=Glycine max PE=4 SV=2
Length = 574
Score = 791 bits (2044), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/574 (68%), Positives = 455/574 (79%), Gaps = 5/574 (0%)
Query: 1 MESARTIFCASPPFPPRTHH-WNTLPSSSYTSVLMFREQAAPTVSSRSTSVSAQKFPTSV 59
ME +RT+FC+SPPFPPRTHH WNTLP SS TSVLM REQA+PTV+S S++ SAQ FP SV
Sbjct: 1 MEFSRTMFCSSPPFPPRTHHPWNTLPLSSSTSVLMLREQASPTVASWSSNFSAQNFPASV 60
Query: 60 LLQEQRDEQRPLLHVSKEDKTCQAVLNARQVDMSLVHEENNIGKVDQVVDDFRQHLHLWP 119
LLQEQRDE RPLLH+SKEDKT QA+L+ RQ+D +VHEENN DQVV DFR+HLH WP
Sbjct: 61 LLQEQRDEYRPLLHMSKEDKTSQAMLSTRQMDTVMVHEENNTENADQVVLDFRKHLHYWP 120
Query: 120 HLQNLLTSSETGEVDASSTLQHVTV-AERPANDVPCNAISLSRQALSPSKHEASVXXXXX 178
HLQNLL SS+TGE+ ASSTLQ V+ +R N V CN +SL+++ALS SK +SV
Sbjct: 121 HLQNLLASSQTGEISASSTLQQVSSDLDRHTNGVQCNRVSLAKKALSTSKQGSSVVEDLK 180
Query: 179 XXXXXXXXX--XXXXXXXXXPSRRSNKTVRSTRLLEXXXXXXXXXXXXXXDNDTYLARKD 236
PS NKTVRSTRLLE D++TYLARKD
Sbjct: 181 SIKADDDSIPFGLASTGLADPSIGRNKTVRSTRLLERRSKQRKVPKSKVIDDETYLARKD 240
Query: 237 DPQERIRVKRKINEAFDQNDPQRLFLRSP-GKKLLPIEEESQLIVQIQDLLKLEELKTSL 295
D E++RV++K NE DQNDP FLR P K+LL +E+ESQLI QIQDLL+LEE+KT L
Sbjct: 241 DAHEKLRVEKKKNEELDQNDPLCFFLRGPETKQLLTLEQESQLISQIQDLLRLEEVKTKL 300
Query: 296 QSQFGREPTMAEWAEGAGLKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSL 355
QSQFGREPTMAEWAEG GL CR L +LR G+RSREKLI+ANLRMV+HVAK+YQGRGLSL
Sbjct: 301 QSQFGREPTMAEWAEGVGLNCRMLHAQLRSGSRSREKLIQANLRMVVHVAKSYQGRGLSL 360
Query: 356 QDLLQEGSMGLLKSVKKFKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLG 415
QDLLQEGSMGL+KSV+KF P VG RFG+YA+WWI+QAIRKA+F HSRTIRLPEKV+ LG
Sbjct: 361 QDLLQEGSMGLMKSVEKFNPLVGSRFGNYAFWWIRQAIRKAVFRHSRTIRLPEKVFILLG 420
Query: 416 KILEAKKLYIQEGNLRPTKEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQE 475
K++EAKKLYIQEGNL PTKE+LARRVG++ +KI LL+ ARIP+SMQQTVW DQNTTFQE
Sbjct: 421 KVMEAKKLYIQEGNLHPTKEELARRVGVTVEKIDKLLFSARIPISMQQTVWADQNTTFQE 480
Query: 476 ITADTSIESPDSSVSKELMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFG 535
ITAD ++E+ D SV K+LMR+HVLN+LS L PKERRIIRLR+GFEDGEQKSLSE+G+IFG
Sbjct: 481 ITADPTVEATDVSVEKQLMRQHVLNVLSILHPKERRIIRLRYGFEDGEQKSLSEIGDIFG 540
Query: 536 LSKERVRQLENRAFYKLKKCLASQGLDAYADLLV 569
LSKERVRQLE RA YKLKKCL QGLDAY DLL+
Sbjct: 541 LSKERVRQLEIRALYKLKKCLVKQGLDAYVDLLL 574
>G7IA88_MEDTR (tr|G7IA88) RNA polymerase sigma factor OS=Medicago truncatula
GN=MTR_1g063850 PE=4 SV=1
Length = 567
Score = 764 bits (1974), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/574 (65%), Positives = 451/574 (78%), Gaps = 12/574 (2%)
Query: 1 MESARTIFCASPPFPPRTHHWNTLPSSSYTSVLMFREQAAPTVSSRSTSVSAQKFPTSVL 60
MESART+FC+SP PPRTHHWNTLPSSSYTSVLM REQ APTV++ TS S+Q FPTSVL
Sbjct: 1 MESARTMFCSSPLCPPRTHHWNTLPSSSYTSVLMLREQVAPTVTAWCTSYSSQNFPTSVL 60
Query: 61 LQEQRDEQRPLLHVSKEDKTCQAVLNARQVDMSLVHEENNIGKVDQVVDDFRQHLHLWPH 120
LQEQ DE RPLLH+SK+DKTCQA LN RQ+DM V E+N+ DQV DFRQHLHL P
Sbjct: 61 LQEQCDEYRPLLHISKKDKTCQATLNTRQMDMVSVQEKNDTSNTDQVARDFRQHLHLLPR 120
Query: 121 LQNLLTSSETGEVDASSTLQHVTVAERPANDVPCNAISLSRQALSPSKHEASVXXXXXXX 180
L+NLLTSS+TGE+D SSTLQH A+ + CNA+SLS+QA S ++ S+
Sbjct: 121 LENLLTSSQTGEMDGSSTLQH-------ADSLQCNAVSLSKQAASVAEDLISIKADEDAD 173
Query: 181 XXXXXX----XXXXXXXXXXPSRRSNKTVRSTRLLEXXXXXXXXXXXXXXDNDTYLARKD 236
P NKTVRSTRL E D +TYL KD
Sbjct: 174 NSIPFGLVPPSCLASSSSAEPLLGGNKTVRSTRLRERRAKERKVPKLKVKDKETYLDGKD 233
Query: 237 DPQERIRVKRKINEAFDQNDPQRLFLRSP-GKKLLPIEEESQLIVQIQDLLKLEELKTSL 295
+E+++V++KI++ +Q+DP FL+SP K+LL E+ESQL+VQIQ+LL+LE+LKTSL
Sbjct: 234 AAEEKLQVQKKISKGMNQSDPLNKFLQSPESKQLLTSEQESQLVVQIQELLRLEDLKTSL 293
Query: 296 QSQFGREPTMAEWAEGAGLKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSL 355
QSQFGREPTMAEWAEGAGL CR ++ +LRCGNRSREKLI+ANLR+V ++AK+YQGRGLS+
Sbjct: 294 QSQFGREPTMAEWAEGAGLNCRKMKAQLRCGNRSREKLIQANLRLVHYIAKSYQGRGLSI 353
Query: 356 QDLLQEGSMGLLKSVKKFKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLG 415
+DLLQEGS GL+KS+KKFK Q GCRF SYAYWWIKQAIRKAI++HSRTIRLPEKVY +L
Sbjct: 354 EDLLQEGSTGLIKSIKKFKTQAGCRFASYAYWWIKQAIRKAIYNHSRTIRLPEKVYNKLS 413
Query: 416 KILEAKKLYIQEGNLRPTKEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQE 475
K+LEAKKLY +EGNL PTKE+LARRVGIS DK+ LL+VARIP+SMQ TV ++ +TTFQE
Sbjct: 414 KVLEAKKLYKEEGNLNPTKEELARRVGISPDKVDRLLFVARIPISMQNTVGSETDTTFQE 473
Query: 476 ITADTSIESPDSSVSKELMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFG 535
ITAD +IESP+ SV+K+LMRRHVLN+L+ LRPKERRIIRLRFGFEDGE+KSLSE+GEIFG
Sbjct: 474 ITADCAIESPNMSVAKQLMRRHVLNVLNILRPKERRIIRLRFGFEDGEEKSLSEIGEIFG 533
Query: 536 LSKERVRQLENRAFYKLKKCLASQGLDAYADLLV 569
LS+ERVRQLE+RA YKLKK L QGLDAYADLL+
Sbjct: 534 LSRERVRQLESRALYKLKKYLVGQGLDAYADLLI 567
>I1L8Z5_SOYBN (tr|I1L8Z5) Uncharacterized protein OS=Glycine max PE=4 SV=1
Length = 575
Score = 764 bits (1973), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/575 (68%), Positives = 456/575 (79%), Gaps = 6/575 (1%)
Query: 1 MESARTIFCASPPFPPRTHH-WNTLPSSSYTS-VLMFREQAAPTVSSRSTSVSAQKFPTS 58
ME ART+FC+SPPFPPRTHH W+TLPSSS TS VLM EQA+PTV+S S++ SAQ FP S
Sbjct: 1 MEFARTMFCSSPPFPPRTHHPWSTLPSSSSTSSVLMLHEQASPTVASWSSNFSAQNFPAS 60
Query: 59 VLLQEQRDEQRPLLHVSKEDKTCQAVLNARQVDMSLVHEENNIGKVDQVVDDFRQHLHLW 118
VLL EQRDE RPLLH+SKEDKT QA+L+ RQ+D VHEENN DQVV DFR+HLH W
Sbjct: 61 VLLPEQRDEYRPLLHMSKEDKTSQAMLSTRQMDTVTVHEENNTENADQVVLDFRKHLHHW 120
Query: 119 PHLQNLLTSSETGEVDASSTLQHVTV-AERPANDVPCNAISLSRQALSPSKHEASVXXXX 177
P+LQ LLTSS+ GEV ASSTL+HV+V ER N V N +SL+++ALS SK E+SV
Sbjct: 121 PNLQYLLTSSQIGEVAASSTLEHVSVDLERRPNGVQFNGVSLAKKALSTSKQESSVVEDL 180
Query: 178 XXXXXXXXXX--XXXXXXXXXPSRRSNKTVRSTRLLEXXXXXXXXXXXXXXDNDTYLARK 235
PS NKTVRSTRLLE D++TYLARK
Sbjct: 181 KSIKADDDSIPFGLASTSLADPSIGRNKTVRSTRLLERRSKQRKVPKSKVIDDETYLARK 240
Query: 236 DDPQERIRVKRKINEAFDQNDPQRLFLRSP-GKKLLPIEEESQLIVQIQDLLKLEELKTS 294
DD QE++R ++K NE DQ+DP RLFL P K+LL +E+ESQLI QIQDLL+LEE+KT+
Sbjct: 241 DDAQEKLRAEKKKNEELDQDDPLRLFLWGPETKQLLTLEQESQLISQIQDLLRLEEVKTN 300
Query: 295 LQSQFGREPTMAEWAEGAGLKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLS 354
LQSQFGREPTMAEWAEGAGL CR LQ +L GNRSREKLI+ANLRMV+HVAK+YQGRGLS
Sbjct: 301 LQSQFGREPTMAEWAEGAGLNCRLLQSQLHSGNRSREKLIQANLRMVVHVAKSYQGRGLS 360
Query: 355 LQDLLQEGSMGLLKSVKKFKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQL 414
LQDLLQEGSMGL+KSV+KF P G RFG+YA+WWI+QAIRKA+F HSRTIRLPEKV+ L
Sbjct: 361 LQDLLQEGSMGLMKSVEKFNPLAGSRFGNYAFWWIRQAIRKAVFRHSRTIRLPEKVFILL 420
Query: 415 GKILEAKKLYIQEGNLRPTKEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQ 474
GK++EAKKLYIQEGNL PTKE+LARRVG++ +KI LL+ ARIP+SMQQTVW DQNTTFQ
Sbjct: 421 GKVMEAKKLYIQEGNLHPTKEELARRVGVTVEKIDKLLFSARIPISMQQTVWADQNTTFQ 480
Query: 475 EITADTSIESPDSSVSKELMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIF 534
EITAD ++E+ D +V K+LMRRHVLN+LS L PKERRIIRLR+GFEDGEQKSLSE+G+IF
Sbjct: 481 EITADPTVEATDVTVEKQLMRRHVLNVLSVLHPKERRIIRLRYGFEDGEQKSLSEIGDIF 540
Query: 535 GLSKERVRQLENRAFYKLKKCLASQGLDAYADLLV 569
GLSKERVRQLE RA YKLKKCL QGLDAY DLL+
Sbjct: 541 GLSKERVRQLEIRALYKLKKCLVKQGLDAYVDLLL 575
>I1NAA3_SOYBN (tr|I1NAA3) Uncharacterized protein OS=Glycine max PE=4 SV=1
Length = 554
Score = 617 bits (1592), Expect = e-174, Method: Compositional matrix adjust.
Identities = 321/543 (59%), Positives = 396/543 (72%), Gaps = 9/543 (1%)
Query: 32 VLMFREQAAPTVSSRSTSVSAQKFPTSVLLQEQRDEQRPLLHVSKEDKTCQAVLNARQVD 91
V M EQAAP V+S S+S +AQ FPTSVLLQEQRDE +P LHV ++ T LN RQ+D
Sbjct: 16 VTMLHEQAAPAVASWSSSSAAQHFPTSVLLQEQRDEYKPFLHVHNKETT----LNTRQMD 71
Query: 92 MSLVHEENNIGKVDQVVDDFRQHLHLWPHLQNLLTSSETGEVDASSTLQHVTV-AERPAN 150
M+ VHE+ N DQ+V DF Q LHL HLQNLLT S T + ASS LQ V + +E PA+
Sbjct: 72 MTSVHEKGNTSNADQLVHDFVQQLHLRSHLQNLLTCSPTRGIAASSILQPVDIDSEWPAD 131
Query: 151 DVPCNAISLSRQALSPSKHEASVXXXXXXXXXXXXX---XXXXXXXXXXPSRRSNKTVRS 207
VP NA+SL++QALS SK S S + NK VRS
Sbjct: 132 GVPRNAVSLAQQALSASKQAVSTTGEMKLIEIDDDDPLPSGLASTSLTDSSLKKNKVVRS 191
Query: 208 TRLLEXXXXXXXXXXXXXXDNDTYLARKDDPQERIRVKRKINEAFDQNDPQRLFLRSP-G 266
TR++E D ++YL RK D Q R+R+++K+ E +D NDP RLFL P
Sbjct: 192 TRIIERLSKQRKSSKSKFLDEESYLERKSDVQRRLRLEKKLKEGYDPNDPLRLFLSGPES 251
Query: 267 KKLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGLKCRALQMKLRCG 326
++LL EEESQLI Q+QDL +LEE+K LQ+Q REPT+AEWA+ G C ALQ +L C
Sbjct: 252 RQLLTREEESQLITQLQDLSRLEEVKIRLQTQLRREPTLAEWADAVGHSCYALQTQLHCA 311
Query: 327 NRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFKPQVGCRFGSYAY 386
NRS+EKL ANLRMV+H+AK YQGRGLSLQDL QEGS GL+KS++KFKP+ GCRFG+YAY
Sbjct: 312 NRSKEKLFHANLRMVVHIAKHYQGRGLSLQDLFQEGSTGLMKSIEKFKPEAGCRFGTYAY 371
Query: 387 WWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTKEDLARRVGISED 446
WWI+ A+RKAIF HSRTIRLPE +YT LGK++EAKK YIQEGNL PTKE+LAR+VGI+ +
Sbjct: 372 WWIRHAVRKAIFLHSRTIRLPENLYTLLGKVIEAKKSYIQEGNLHPTKEELARKVGITIE 431
Query: 447 KISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELMRRHVLNLLSTLR 506
K+ +LL+ +R P+SMQQTVW DQ+TTFQEITAD++IE PD +VSK+LMR HV NLL+ L
Sbjct: 432 KMDNLLFASRNPISMQQTVWADQDTTFQEITADSAIEIPDVTVSKQLMRMHVHNLLNILS 491
Query: 507 PKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLKKCLASQGLDAYAD 566
PKER IIRLRFG EDGE+K+LS++G++FGL+KERVRQLE+RA KL++CL SQGLDAY D
Sbjct: 492 PKERGIIRLRFGIEDGEEKTLSDIGKVFGLTKERVRQLESRALLKLRQCLESQGLDAYTD 551
Query: 567 LLV 569
LLV
Sbjct: 552 LLV 554
>I1JPP1_SOYBN (tr|I1JPP1) Uncharacterized protein OS=Glycine max PE=4 SV=1
Length = 554
Score = 616 bits (1588), Expect = e-174, Method: Compositional matrix adjust.
Identities = 322/543 (59%), Positives = 396/543 (72%), Gaps = 9/543 (1%)
Query: 32 VLMFREQAAPTVSSRSTSVSAQKFPTSVLLQEQRDEQRPLLHVSKEDKTCQAVLNARQVD 91
V M EQAAP V+S S+S +AQ FPTSVLLQEQRDE +PLLHV ++ T LN RQ+D
Sbjct: 16 VTMLHEQAAPAVASWSSSSAAQHFPTSVLLQEQRDEYKPLLHVHNKETT----LNTRQMD 71
Query: 92 MSLVHEENNIGKVDQVVDDFRQHLHLWPHLQNLLTSSETGEVDASSTLQHVTV-AERPAN 150
M+ VHE+ N+ DQ+V DF Q LHL HLQNLLT S T + ASS LQ V + +E PA+
Sbjct: 72 MTSVHEKGNMSNGDQLVHDFVQQLHLRSHLQNLLTCSPTRGIAASSILQPVDIDSEWPAD 131
Query: 151 DVPCNAISLSRQALSPSKHEASVXXXXXXXXXXXXX---XXXXXXXXXXPSRRSNKTVRS 207
+P NAISL++QALS SK S S + NK VRS
Sbjct: 132 GLPGNAISLAQQALSASKQAVSTTGEMKLIEIDDDDPLPFGLASTSLANSSLKKNKVVRS 191
Query: 208 TRLLEXXXXXXXXXXXXXXDNDTYLARKDDPQERIRVKRKINEAFDQNDPQRLFLRSP-G 266
TR++E D ++YL RK D Q R+R+++K+ E +DQNDP RLFL P
Sbjct: 192 TRIIERRSKQRKSSKSKIIDEESYLERKSDVQRRLRLEKKLKEGYDQNDPLRLFLSGPES 251
Query: 267 KKLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGLKCRALQMKLRCG 326
++LL EEES LI Q+QDL + EE+K LQSQ REPT+AEWA+ GL C LQ +L C
Sbjct: 252 RQLLTREEESLLITQLQDLSRFEEVKIRLQSQLRREPTLAEWADAVGLSCYTLQTQLHCA 311
Query: 327 NRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFKPQVGCRFGSYAY 386
NRS+EKL ANLRMV+H+AK YQGRGLSLQDL QEGS GL+KS++KFKP+ GCRFG+YAY
Sbjct: 312 NRSKEKLFHANLRMVVHIAKHYQGRGLSLQDLFQEGSTGLMKSIQKFKPEAGCRFGTYAY 371
Query: 387 WWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTKEDLARRVGISED 446
WWI+ AIRKAIF HSRTIRLPE +YT LGK++EAKK YIQEGNL PTKE+LARRVGI+ +
Sbjct: 372 WWIRHAIRKAIFLHSRTIRLPENLYTLLGKLIEAKKSYIQEGNLHPTKEELARRVGITVE 431
Query: 447 KISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELMRRHVLNLLSTLR 506
K+ +LL+ +R P+SMQQT+W DQ+TTFQEITAD++IE P +VSK+LMRRHV NLL+ L
Sbjct: 432 KLDNLLFASRNPISMQQTLWVDQDTTFQEITADSAIEIPGVTVSKQLMRRHVHNLLNILS 491
Query: 507 PKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLKKCLASQGLDAYAD 566
PKE+ IIRLRFG EDG++K+LS++G++FGL+KERVRQLE RA KLK+CL SQGLDAY D
Sbjct: 492 PKEKGIIRLRFGIEDGKEKTLSDIGKVFGLTKERVRQLECRALSKLKQCLESQGLDAYID 551
Query: 567 LLV 569
LLV
Sbjct: 552 LLV 554
>B9MTE1_POPTR (tr|B9MTE1) Predicted protein OS=Populus trichocarpa
GN=POPTRDRAFT_809851 PE=4 SV=1
Length = 535
Score = 581 bits (1498), Expect = e-163, Method: Compositional matrix adjust.
Identities = 305/570 (53%), Positives = 381/570 (66%), Gaps = 38/570 (6%)
Query: 1 MESARTIFCASPPFPPRTHHWNTLPSSSYTSVLMFREQAAPTVSSRSTSVSAQKFPTSVL 60
ME+ RT+ +SP FP RTH N+L SS VL+ REQA P VSS T+ +AQ FPTSVL
Sbjct: 1 MEAGRTLLSSSPSFPTRTHLKNSLTSS----VLILREQATPAVSSIPTTSTAQHFPTSVL 56
Query: 61 LQEQRDEQRPLLHVSKEDKTCQAVLNARQVDMSLV-HEENNIGKVDQVVDDFRQHLHLWP 119
LQEQRDE RPL ++ KED+ QA L+ R+ ++ HE + ++DQ+V++F LH WP
Sbjct: 57 LQEQRDEFRPLQNIFKEDRASQATLDRRKTEIGTSGHEGKDSDELDQLVENFEYQLHHWP 116
Query: 120 HLQNLLTSSETGEVDASSTLQHVTVAERPANDVPCNAISLSRQALSPSKHEASVXXXXXX 179
NL ++ + P N I+L+++ALS SKH A +
Sbjct: 117 AYWNL--------------------TDKLIDVEPTNVINLAKRALSASKHAAFLADNNTD 156
Query: 180 XXXXXXXXXXXXXXXXXPSRRSNKTVRSTRLLEXXXXXXXXXXXXXXDNDTYLARKDDPQ 239
K VRS R L +TY ++ D Q
Sbjct: 157 LDNLASTSSSSFSLEEV------KIVRSRRHLARQSLNRRAPKTKDLIFETYDSKSADIQ 210
Query: 240 ERIRVKRKINEAFDQNDPQRLFLRSP-GKKLLPIEEESQLIVQIQDLLKLEELKTSLQSQ 298
+R+ ++ FD NDP RLFL P K+LL +EE +LI QIQDL+ LE +K L+SQ
Sbjct: 211 KRL------SQGFDPNDPLRLFLWGPETKQLLTAKEEFELIAQIQDLMNLEGVKNRLESQ 264
Query: 299 FGREPTMAEWAEGAGLKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDL 358
FGREPT+ EWA+ GL C L+++L GNRSREKLI ANLRMV+H+AK YQ RGL LQDL
Sbjct: 265 FGREPTLVEWAQAVGLSCHVLKLQLHSGNRSREKLINANLRMVVHIAKRYQNRGLGLQDL 324
Query: 359 LQEGSMGLLKSVKKFKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKIL 418
LQEG++GL+KS++KFKPQ GCRF +YAYWWI+Q I KAIF HSRTIRLPE VY LGK++
Sbjct: 325 LQEGTVGLMKSIEKFKPQAGCRFATYAYWWIRQTITKAIFQHSRTIRLPENVYGLLGKVM 384
Query: 419 EAKKLYIQEGNLRPTKEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITA 478
EAK+ YIQEGN +PT E++ARRVGI+ DK+ LL R P+SMQQTVW+DQNTTFQEITA
Sbjct: 385 EAKRSYIQEGNHQPTAEEIARRVGIAIDKLEKLLCFTRTPLSMQQTVWSDQNTTFQEITA 444
Query: 479 DTSIESPDSSVSKELMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSK 538
DT IE PD SV+K+LMR+H+ LL+ L KERRIIRLRFG EDG+QKSLSE+G +FGLSK
Sbjct: 445 DTEIEIPDMSVAKQLMRKHIRGLLNILSLKERRIIRLRFGIEDGKQKSLSEIGNVFGLSK 504
Query: 539 ERVRQLENRAFYKLKKCLASQGLDAYADLL 568
ERVRQLE+RA YKLK+C+ S GLDAYADLL
Sbjct: 505 ERVRQLESRALYKLKQCVGSHGLDAYADLL 534
>B9S0J0_RICCO (tr|B9S0J0) RNA polymerase sigma factor rpoD, putative OS=Ricinus
communis GN=RCOM_1355260 PE=4 SV=1
Length = 548
Score = 578 bits (1490), Expect = e-162, Method: Compositional matrix adjust.
Identities = 311/574 (54%), Positives = 386/574 (67%), Gaps = 31/574 (5%)
Query: 1 MESARTIFCASPPFPPRTHHWNTLPSS-SYTS--VLMFREQAAPTVSSRSTSVSAQKFPT 57
ME+ART + PPFP RTH N+L SS +Y V M EQA P V+S T+ A+ FPT
Sbjct: 1 METARTFLSSPPPFPSRTHFKNSLSSSDAYVDNFVFMLHEQAVPAVTSAPTTSIARNFPT 60
Query: 58 SVLLQEQRDEQRPLLHVSKEDKTCQAVLNARQVDMSLVHEENNIGKVDQVVDDFRQHLHL 117
SVLLQEQRDE RPLL++ KEDKT QA ++ +Q+D +E G V+D H +L
Sbjct: 61 SVLLQEQRDEFRPLLNIFKEDKTFQATVDTKQMDPGTSDQE---GICSDVLDQLILHSNL 117
Query: 118 -WPHLQNLLTSSETGEVDASSTLQHVTVAERPANDVPCNAISLSRQALSPSKHEASVXXX 176
W +L S T D + V E P N I L+R+ALS SK EA++
Sbjct: 118 SW----SLTMQSITTNTD------ELMVVE------PTNVIDLARKALSASK-EAALLAQ 160
Query: 177 XXXXXXXXXXXXXXXXXXXXPSRRSNKTVRSTRLLEXXXXXXXXXXXXXXDNDTYLARKD 236
S KTVRSTR LE ++ Y +R
Sbjct: 161 KCANLDDTVSTGLEPTDLSNFSLEEVKTVRSTRRLERQSKNRRVTKTKEIFHEPYSSR-- 218
Query: 237 DPQERIRVKRKINEAFDQNDPQRLFLRSP-GKKLLPIEEESQLIVQIQDLLKLEELKTSL 295
R V++KINE FD DP RLFL P K+LL +EES+LI Q+QDL+ LE +K
Sbjct: 219 ----RAGVQKKINEGFDPKDPLRLFLWGPETKQLLTAKEESELIGQVQDLMSLENVKEKF 274
Query: 296 QSQFGREPTMAEWAEGAGLKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSL 355
+ QFGR+PT+ EWA+ GL +Q +L GNRSREKLI ANLRMV+H+AK YQGRGLSL
Sbjct: 275 KLQFGRDPTLVEWADAVGLSYSVMQSQLHSGNRSREKLINANLRMVVHIAKQYQGRGLSL 334
Query: 356 QDLLQEGSMGLLKSVKKFKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLG 415
QDLLQEGSMGL+KS++KFKPQVGCRF +YAYWWI+Q +RKAIF HSRTIRLPE VY LG
Sbjct: 335 QDLLQEGSMGLMKSIEKFKPQVGCRFATYAYWWIRQTVRKAIFQHSRTIRLPENVYHTLG 394
Query: 416 KILEAKKLYIQEGNLRPTKEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQE 475
K+ EAK+ YI EGN PTKE+LA+R+GI+ ++ LLY+AR+P+SMQQTVW DQ TTFQE
Sbjct: 395 KVSEAKRSYIMEGNHNPTKEELAKRIGITTVRLERLLYMARMPLSMQQTVWADQETTFQE 454
Query: 476 ITADTSIESPDSSVSKELMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFG 535
ITAD +E P+ V+K+LMR+HVL+LL+ L P+ER+IIRLR+G EDG++KSLSE+G +FG
Sbjct: 455 ITADIEVEIPELCVAKQLMRKHVLSLLNILNPRERKIIRLRYGIEDGKKKSLSEIGSVFG 514
Query: 536 LSKERVRQLENRAFYKLKKCLASQGLDAYADLLV 569
LSKERVRQLE+RA YKLK+CLAS GL+AYADLLV
Sbjct: 515 LSKERVRQLESRALYKLKQCLASHGLEAYADLLV 548
>D7TQP0_VITVI (tr|D7TQP0) Putative uncharacterized protein OS=Vitis vinifera
GN=VIT_08s0040g01560 PE=4 SV=1
Length = 561
Score = 572 bits (1474), Expect = e-160, Method: Compositional matrix adjust.
Identities = 305/575 (53%), Positives = 388/575 (67%), Gaps = 20/575 (3%)
Query: 1 MESARTIFCASPPFPPRTHHWNTLPSSSYTSVLMFREQAAPTVSSRSTSVSAQKFPTSVL 60
ME+ I ++P FPPRTH N S +SVLM +Q AP V+S T++ A+KFPTSVL
Sbjct: 1 MEAGTNILSSTPSFPPRTHFRN-----SSSSVLMLHDQVAPAVASIPTTI-ARKFPTSVL 54
Query: 61 LQEQRDEQRPLLHVSKEDKTCQAVLNARQVDMSLVHEENNIGKVDQVVDDFRQHLHLWPH 120
LQEQRDE RP K+++T QA L RQ+++ + +E N +Q + +F + L L P
Sbjct: 55 LQEQRDEYRPFPQALKDERTFQATLEKRQMEIVVSADEENSDDHNQYMVNFERQLLLQPG 114
Query: 121 LQNLLTSSETGEVD--ASSTLQHVTVAERPANDV-PCNAISLSRQALSPSKHEASVXXXX 177
L L SS+TGE +SS ++ +T + DV PC+ ++L+++ALS SK S+
Sbjct: 115 LWYSLPSSQTGEKSPFSSSIMKSITTDIENSMDVKPCDVLALAKKALSASKQAVSLYENA 174
Query: 178 XXXXXXXXXXXXXXXXXXXPSRR--SNKTVRSTRLLEXXXXXXXXXXXXXXDNDTYLARK 235
KTVRSTRLLE N +
Sbjct: 175 KLLGADLEDSPSPSLGAISSPNLPLEEKTVRSTRLLERRSKKRR--------NPKVAVHE 226
Query: 236 DDPQERIRVKRKINEAFDQNDPQRLFLRSP-GKKLLPIEEESQLIVQIQDLLKLEELKTS 294
+ R V+RKINE +D DP RLFL P +KLL +EES+LIVQIQ+L++LEE+K
Sbjct: 227 NHGSRRAEVQRKINEGYDPKDPLRLFLWGPETRKLLTAKEESELIVQIQELMRLEEVKKR 286
Query: 295 LQSQFGREPTMAEWAEGAGLKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLS 354
LQS REPT+ EWAE GL C+ LQ +L GNRSR+KLI ANLRMV+H+AK YQGRGL+
Sbjct: 287 LQSHLKREPTVVEWAEAVGLSCQVLQSQLHSGNRSRQKLIYANLRMVVHIAKQYQGRGLN 346
Query: 355 LQDLLQEGSMGLLKSVKKFKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQL 414
LQDLLQEGSMGL+ SV+KFKP GCRF SYAYWWI+QA+RKAIF HSRTIRLPE +Y+ L
Sbjct: 347 LQDLLQEGSMGLMNSVEKFKPNAGCRFASYAYWWIRQAVRKAIFQHSRTIRLPENMYSLL 406
Query: 415 GKILEAKKLYIQEGNLRPTKEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQ 474
GK+ EAK+L+IQEG+ PTKE++A RVGI+ +K+ LL R+P+SMQQ VW DQ+TTFQ
Sbjct: 407 GKVKEAKRLFIQEGHHDPTKEEIAERVGITIEKLQRLLLHTRMPLSMQQPVWADQDTTFQ 466
Query: 475 EITADTSIESPDSSVSKELMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIF 534
E+TADT IE PD SV+K+LMR+HV NLL L PKERRIIRLRFG DG ++LSE+G +F
Sbjct: 467 EVTADTGIEIPDVSVAKQLMRQHVRNLLHVLTPKERRIIRLRFGIGDGIPRTLSEIGLVF 526
Query: 535 GLSKERVRQLENRAFYKLKKCLASQGLDAYADLLV 569
G SKERVRQLE RA +KLK+CL+S GL++Y DLLV
Sbjct: 527 GFSKERVRQLEQRALHKLKQCLSSHGLESYTDLLV 561
>G7L3V2_MEDTR (tr|G7L3V2) RNA polymerase sigma factor rpoD OS=Medicago truncatula
GN=MTR_7g101840 PE=4 SV=1
Length = 557
Score = 556 bits (1434), Expect = e-156, Method: Compositional matrix adjust.
Identities = 304/571 (53%), Positives = 383/571 (67%), Gaps = 22/571 (3%)
Query: 7 IFCASPPFPPRTHHWNTLPSSSYTSVLMFREQAAPTVSSRSTSVSAQKFPTSVLLQEQRD 66
+F S PFP R LPS S ++ +QAAP +SS T+ FPTSVLLQE RD
Sbjct: 1 MFSPSTPFPSRI-----LPSPSV--MMPPHDQAAPALSSWPTT-----FPTSVLLQEHRD 48
Query: 67 EQRPLLHVSKED-KTCQAVLNARQVDMSLVHEE------NNIGKVDQVVDDFRQHLHLWP 119
E +PLLH ED K QA LN R DM+ + E+ + G VD V + LHL
Sbjct: 49 EYKPLLHTCNEDNKPPQATLNTRVTDMTSICEKIITGDGDGDGHVDVSVHNCMHQLHLRC 108
Query: 120 HLQNLLTSSETGEVDASSTLQHVTVAERPANDVPCNAISLSRQALSPSKHEASVXXXXXX 179
HLQNLL SS + +SS+ + PA+ +A++L++QALS SK A+V
Sbjct: 109 HLQNLLASSPEEDFVSSSSSSSSSSTMLPADGFQWDALTLAKQALSASKQAAAVAQELKL 168
Query: 180 XXXXXXXXXXXXXXXXXPSRRSNKTVRSTRLLEXXXXXXXXXXXXXXDNDTYLARKDDPQ 239
S NK VRS RL E D++ YL +K + Q
Sbjct: 169 VKIDDDDSLPLGLADS--SLGKNKIVRSIRLKERRSKQRKVSNSKVLDDEMYLTKKSNVQ 226
Query: 240 ERIRVKRKINEAFDQNDPQRLFLRSP-GKKLLPIEEESQLIVQIQDLLKLEELKTSLQSQ 298
R+R+++K+ E D N RLFL SP K+LL IEEESQLI QIQDL KL+E K LQS
Sbjct: 227 RRLRLEKKLKEGLDGNHALRLFLWSPETKQLLSIEEESQLIAQIQDLFKLKETKIKLQSH 286
Query: 299 FGREPTMAEWAEGAGLKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDL 358
FGREPT+AEWA+G GL CR LQ +L CGNRS++KLI ANLR+V+H+AK YQGRGLSLQDL
Sbjct: 287 FGREPTLAEWADGVGLSCRDLQKRLHCGNRSKDKLIHANLRLVVHIAKYYQGRGLSLQDL 346
Query: 359 LQEGSMGLLKSVKKFKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKIL 418
LQEGSMGL++SV+KFKPQ GCRF +YAYWWI+Q IR+A+F HS+TIRLPE Y LGKI
Sbjct: 347 LQEGSMGLMRSVEKFKPQAGCRFSTYAYWWIRQTIRRALFLHSKTIRLPENFYALLGKIA 406
Query: 419 EAKKLYIQEGNLRPTKEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITA 478
EAKK YI+EGNL PTKE++A+RVGI+ D++ LL+ R P+SM++ VW D +TTFQEITA
Sbjct: 407 EAKKSYIKEGNLHPTKEEIAKRVGITVDRLEMLLFSTRTPLSMERAVWADSDTTFQEITA 466
Query: 479 DTSIESPDSSVSKELMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSK 538
D+SIE P+ V+K+LMR HV NLL L PKER+++RLRFG EDG +KSL+E+G++ G+ K
Sbjct: 467 DSSIEIPNVCVAKQLMRSHVRNLLGILPPKERKVLRLRFGIEDGYEKSLTEIGKVLGVCK 526
Query: 539 ERVRQLENRAFYKLKKCLASQGLDAYADLLV 569
ERVRQLE++A KLK+CL SQ LDAY DL+V
Sbjct: 527 ERVRQLESQALNKLKQCLVSQQLDAYVDLIV 557
>M5WAB7_PRUPE (tr|M5WAB7) Uncharacterized protein OS=Prunus persica
GN=PRUPE_ppa003513mg PE=4 SV=1
Length = 568
Score = 554 bits (1428), Expect = e-155, Method: Compositional matrix adjust.
Identities = 301/574 (52%), Positives = 387/574 (67%), Gaps = 11/574 (1%)
Query: 1 MESARTIFCASPPFPPRTH-HWNTLPSSSYTSVLMFREQAAPTVSSRSTSVSAQKFPTSV 59
ME+ R +S FP TH SS TSVLM EQA P V+S + A+ FPTSV
Sbjct: 1 MEAGRHFLSSSSAFPSTTHLRHPLPSSSPSTSVLMLHEQAVPAVTSVPITSVARHFPTSV 60
Query: 60 LLQEQRDEQRPLLHVSKEDKTCQAVLNARQVDMSL-VHEENNIGKVDQVVDDFRQHLHLW 118
LLQEQRDE +PLLHV KEDKT +A L+ Q++ VHE+ +I +V+ + L L
Sbjct: 61 LLQEQRDEFKPLLHVLKEDKTSEAALDRMQIETGASVHEDLDIDDFYPLVNSSKPQL-LN 119
Query: 119 PHLQNLLTSSETGEVDASS-TLQHVTVAERPANDV-PCNAISLSRQALSPSKHEASVXXX 176
+ ++ +S +TG ++ TL+ +T A DV PCN ++L+++ALS S+ AS+
Sbjct: 120 HDILDVFSSLQTGAKPSTPLTLESLTTASNKHMDVEPCNVVALAKKALSASREAASLAED 179
Query: 177 XXXXXXXXXXXXXXXXXXXXPSRRSNKTVRSTRLLEXXXXXXXXXXXXXXDNDTYLARKD 236
KTVRSTR+LE + +
Sbjct: 180 SQSMGADFDDLGYTSLANWIVEE--EKTVRSTRILERRRKRIKTRKV---PKSKVIGHES 234
Query: 237 DPQERIRVKRKINEAFDQNDPQRLFLRSP-GKKLLPIEEESQLIVQIQDLLKLEELKTSL 295
+ V++KI+E F+ NDP RLFL P ++LL +EE++LI ++QDL KLEE+K+ L
Sbjct: 235 NSFTGSDVRKKISEGFNPNDPLRLFLWGPETRQLLTAKEEAELIARVQDLFKLEEVKSRL 294
Query: 296 QSQFGREPTMAEWAEGAGLKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSL 355
Q+QFGREPT+ EWAE G+ C+ L+ +LR G SREKLI ANLRMV+H+AK YQGRGL L
Sbjct: 295 QTQFGREPTLIEWAEAVGISCQILKSQLRSGTSSREKLIYANLRMVVHIAKQYQGRGLGL 354
Query: 356 QDLLQEGSMGLLKSVKKFKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLG 415
QDL+QEGSMGL+KSV+KFKPQ GCRF +YAYWWI+Q +RKAIF HSRTIRLPE VY+ LG
Sbjct: 355 QDLMQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQTVRKAIFQHSRTIRLPENVYSLLG 414
Query: 416 KILEAKKLYIQEGNLRPTKEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQE 475
K+LEAKK IQEGN P KE+LARRVGI+ +K+ LLY R+P+SMQQ VW DQ+TTFQE
Sbjct: 415 KVLEAKKSCIQEGNHNPNKEELARRVGITVEKLEKLLYATRMPLSMQQPVWADQDTTFQE 474
Query: 476 ITADTSIESPDSSVSKELMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFG 535
+TADT +E PD SV+K+LMR+HV +LLS L +ER IIRLR+G EDG+Q+SLSE+G +FG
Sbjct: 475 VTADTGVEIPDVSVAKQLMRQHVRHLLSILNLREREIIRLRYGIEDGKQRSLSEIGGMFG 534
Query: 536 LSKERVRQLENRAFYKLKKCLASQGLDAYADLLV 569
LSKERVRQLE+RAF KL++ L SQGL AY LLV
Sbjct: 535 LSKERVRQLESRAFLKLRQSLGSQGLGAYGPLLV 568
>E4MX68_THEHA (tr|E4MX68) mRNA, clone: RTFL01-17-E04 OS=Thellungiella halophila
PE=2 SV=1
Length = 547
Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust.
Identities = 273/572 (47%), Positives = 364/572 (63%), Gaps = 28/572 (4%)
Query: 1 MESARTIFCASPPFPPRTHHWNTLPSSSYTSVLMFREQAA-PTVSSRSTSVSAQKFPTSV 59
ME+ R + +SP F +TH + SS +SV+M EQ A P V+SR + ++ FP SV
Sbjct: 1 MEATRNLVSSSPSFQTKTHLKSGF--SSPSSVVMLHEQTATPVVNSRHLTSLSRHFPASV 58
Query: 60 LLQEQRDEQRPLLHVSKEDKTCQAVLNARQVDMSLVHEENNIGKVDQVVDDFRQHLHLWP 119
L QE R+E +PL H +ED+T Q L RQ D + E+ + F Q L
Sbjct: 59 LSQELREESKPLSHALREDRTSQLTLERRQFDELVSSRED---------EKFEQQLLHSA 109
Query: 120 HLQNLLTSSETGEVDASSTLQHVTVAERPANDVP-CNAISLSRQALSPSKHEASVXXXXX 178
L NLL S T E + + P+ D C+ ++L+++ALS SK +A++
Sbjct: 110 GLWNLLISPLTTE-------KQLPAVVSPSADADLCDLVALAQKALSASK-QAALLVENS 161
Query: 179 XXXXXXXXXXXXXXXXXXPSRRSNKTVRSTRLLEXXXXXXXXXXXXXXDNDTYLARKDDP 238
VRS R LE D++ Y+ +K
Sbjct: 162 EADPPDNPRDSLSTSSSMSLPEKGTIVRSKRQLERRAKNRRAPKSNNMDSEGYVPQK--- 218
Query: 239 QERIRVKRKINEAFDQNDPQRLFLRSP-GKKLLPIEEESQLIVQIQDLLKLEELKTSLQS 297
I K+K+ + FD +D +LFL P K+LL +EE++LI IQ L+KLE++KT L+S
Sbjct: 219 ---INAKKKMKQGFDTDDALQLFLWGPETKQLLTAKEEAELIAHIQHLIKLEKVKTKLES 275
Query: 298 QFGREPTMAEWAEGAGLKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQD 357
Q G EPT+ EWAE GL L+ ++ G SREKLI ANLR+V+H+AK YQ RGL+ QD
Sbjct: 276 QNGCEPTIGEWAEAMGLSSPVLKSEIHRGRSSREKLITANLRLVVHIAKQYQNRGLNFQD 335
Query: 358 LLQEGSMGLLKSVKKFKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKI 417
LLQEGSMGL+KSV+KFKPQ GCRF +YAYWWI+Q+IRK+IF +SRTIRLPE VY LGK+
Sbjct: 336 LLQEGSMGLMKSVEKFKPQSGCRFATYAYWWIRQSIRKSIFQNSRTIRLPENVYMLLGKV 395
Query: 418 LEAKKLYIQEGNLRPTKEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEIT 477
EA+K IQ+GN RP+KE LA VG+S +K+ LLY R P+SMQQ +W+DQ+TTFQE+T
Sbjct: 396 SEARKTCIQDGNYRPSKEQLASHVGVSTEKLDKLLYNTRTPLSMQQPIWSDQDTTFQEVT 455
Query: 478 ADTSIESPDSSVSKELMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLS 537
D+ IE+P SV K+LMR HV NLL+ L PKE+RII+LRFG + G+Q+SLSE+GEI+GLS
Sbjct: 456 PDSGIETPSMSVGKQLMRNHVRNLLNVLSPKEKRIIKLRFGIDGGKQRSLSEIGEIYGLS 515
Query: 538 KERVRQLENRAFYKLKKCLASQGLDAYADLLV 569
KERVRQLE+RA Y+LK+ ++S GL+AYADLLV
Sbjct: 516 KERVRQLESRALYRLKQNMSSHGLNAYADLLV 547
>R0HNL5_9BRAS (tr|R0HNL5) Uncharacterized protein OS=Capsella rubella
GN=CARUB_v10022939mg PE=4 SV=1
Length = 547
Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust.
Identities = 276/573 (48%), Positives = 359/573 (62%), Gaps = 30/573 (5%)
Query: 1 MESARTIFCASPPFPPRTHHWNTLPSSSYTSVLMFREQAAP--TVSSRSTSVSAQKFPTS 58
ME+ R + +SP F +TH N SS + V+M EQ A V+SR + ++ FP S
Sbjct: 1 MEATRNLVSSSPSFQTKTHLKNY---SSPSLVVMLHEQTATPVVVNSRHLNSLSRHFPAS 57
Query: 59 VLLQEQRDEQRPLLHVSKEDKTCQAVLNARQVDMSLVHEENNIGKVDQVVDDFRQHLHLW 118
VL QE R+E RPL H +ED+T Q L RQ D + E+ + F Q L
Sbjct: 58 VLSQEPREESRPLSHAFREDRTSQLTLERRQFDELVSSRED---------ETFEQQLIQS 108
Query: 119 PHLQNLLTSSETGEVDASSTLQHVTVAERPANDVP-CNAISLSRQALSPSKHEASVXXXX 177
L NLL S T E + + A P D C+ ++L+++ALS SK +A++
Sbjct: 109 AGLWNLLISPITAE-------KQLPAAVSPLADAELCDVVALAQKALSASK-QAALLADD 160
Query: 178 XXXXXXXXXXXXXXXXXXXPSRRSNKTVRSTRLLEXXXXXXXXXXXXXXDNDTYLARKDD 237
VRS RLLE DN+ Y+ +K +
Sbjct: 161 TEANPSDNSGDSLSTSSSMSLPEEGTIVRSKRLLERRAKNRRAPKSNDVDNEGYVPQKSN 220
Query: 238 PQERIRVKRKINEAFDQNDPQRLFLRSP-GKKLLPIEEESQLIVQIQDLLKLEELKTSLQ 296
K+K + D +D +LFL P K+LL +EE++LI IQ LLKLE++KT L+
Sbjct: 221 ------AKKKFKQGVDTDDALQLFLWGPETKQLLTAKEEAELISHIQHLLKLEKVKTKLE 274
Query: 297 SQFGREPTMAEWAEGAGLKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQ 356
SQ G EPT+ EWAE G+ L+ ++ G SREKLI ANLR+V+H+AK YQ RGL+ Q
Sbjct: 275 SQNGCEPTIGEWAEAMGISSPVLKSEIHRGRSSREKLITANLRLVVHIAKQYQNRGLNFQ 334
Query: 357 DLLQEGSMGLLKSVKKFKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGK 416
DLLQEGSMGL+KSV+KFKPQ GCRF +YAYWWI+Q+IRK+IF +SRTIRLPE VY LGK
Sbjct: 335 DLLQEGSMGLMKSVEKFKPQSGCRFATYAYWWIRQSIRKSIFQNSRTIRLPENVYMLLGK 394
Query: 417 ILEAKKLYIQEGNLRPTKEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEI 476
+ EA+K +QEGN RP+KE LA VG+S++K+ LLY R P+SMQQ +W+DQ+TTFQEI
Sbjct: 395 VSEARKTCVQEGNYRPSKEQLAGHVGVSKEKLDKLLYNTRTPLSMQQPIWSDQDTTFQEI 454
Query: 477 TADTSIESPDSSVSKELMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGL 536
T D+ IE P SV K+LMR HV NLL+ L PKER II+LRFG E G+Q+SLSE+GEI+GL
Sbjct: 455 TPDSGIEIPTISVGKQLMRNHVRNLLNVLSPKERSIIKLRFGIEGGKQRSLSEIGEIYGL 514
Query: 537 SKERVRQLENRAFYKLKKCLASQGLDAYADLLV 569
SKERVRQLE+RA Y+LK+ ++S GL AYADLLV
Sbjct: 515 SKERVRQLESRALYRLKQNMSSHGLHAYADLLV 547
>D7LJA3_ARALL (tr|D7LJA3) RNA polymerase sigma-70 factor OS=Arabidopsis lyrata
subsp. lyrata GN=SIGF PE=4 SV=1
Length = 546
Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust.
Identities = 276/572 (48%), Positives = 359/572 (62%), Gaps = 29/572 (5%)
Query: 1 MESARTIFCASPPFPPRTHHWNTLPS-SSYTSVLMFREQAA-PTVSSRSTSVSAQKFPTS 58
ME+ R + +SP F +TH L S SS +SV+M EQ P V+SR + ++ FP S
Sbjct: 1 MEATRNLVSSSPSFQTKTH----LKSYSSPSSVVMLHEQTTTPVVNSRHLNSLSRHFPAS 56
Query: 59 VLLQEQRDEQRPLLHVSKEDKTCQAVLNARQVDMSLVHEENNIGKVDQVVDDFRQHLHLW 118
VL QE R+E RPL H +ED+T Q L RQ D + E+ + F Q L
Sbjct: 57 VLSQEPREESRPLSHALREDRTSQLTLERRQFDELVSSRED---------EKFEQQLLHS 107
Query: 119 PHLQNLLTSSETGEVDASSTLQHVTVAERPANDVPCNAISLSRQALSPSKHEASVXXXXX 178
L NLL S T E + + AE C+ ++L+++ALS SK +A++
Sbjct: 108 AGLWNLLISPLTAETKLPPVVPPLADAEL------CDIVALAQKALSASK-QAALLADDT 160
Query: 179 XXXXXXXXXXXXXXXXXXPSRRSNKTVRSTRLLEXXXXXXXXXXXXXXDNDTYLARKDDP 238
VRS R LE DN+ Y+ +K
Sbjct: 161 EANPSDNTRGSLSTSSSMSLPEKGAIVRSKRQLERRAKNRRAPKSNDVDNEGYVPQK--- 217
Query: 239 QERIRVKRKINEAFDQNDPQRLFLRSP-GKKLLPIEEESQLIVQIQDLLKLEELKTSLQS 297
I K+K + D +D +LFL P K+LL +EE++LI IQ LLKLE++KT L+S
Sbjct: 218 ---INAKKKFKQGVDTDDALQLFLWGPETKQLLTAKEEAELISHIQHLLKLEKVKTKLES 274
Query: 298 QFGREPTMAEWAEGAGLKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQD 357
Q G EPT+ EWAE G+ L+ ++ G SREKLI ANLR+V+H+AK YQ RGL+ QD
Sbjct: 275 QNGCEPTIGEWAEAMGISSPDLKSEIHRGRSSREKLITANLRLVVHIAKQYQNRGLNFQD 334
Query: 358 LLQEGSMGLLKSVKKFKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKI 417
LLQEGSMGL+KSV+KFKPQ GCRF +YAYWWI+Q+IRK+IF +SRTIRLPE VY LGK+
Sbjct: 335 LLQEGSMGLMKSVEKFKPQSGCRFATYAYWWIRQSIRKSIFQNSRTIRLPENVYMLLGKV 394
Query: 418 LEAKKLYIQEGNLRPTKEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEIT 477
EA+K +QEGN RP+KE LA VG+S +K+ LLY R P+SMQQ +W+DQ+TTFQEIT
Sbjct: 395 SEARKTCVQEGNYRPSKEQLAGHVGVSTEKLDKLLYNTRTPLSMQQPIWSDQDTTFQEIT 454
Query: 478 ADTSIESPDSSVSKELMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLS 537
D+ IE+P SV K++MR HV NLL+ L PKERRII+LRFG + G+Q+SLSE+GEI+GLS
Sbjct: 455 PDSGIETPTMSVGKQMMRNHVRNLLNVLSPKERRIIKLRFGIDGGKQRSLSEIGEIYGLS 514
Query: 538 KERVRQLENRAFYKLKKCLASQGLDAYADLLV 569
KERVRQLE+RA Y+LK+ + S GL AYADLLV
Sbjct: 515 KERVRQLESRALYRLKQHMNSHGLHAYADLLV 546
>I3SER7_LOTJA (tr|I3SER7) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
Length = 311
Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust.
Identities = 228/311 (73%), Positives = 265/311 (85%), Gaps = 1/311 (0%)
Query: 260 LFLRSP-GKKLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGLKCRA 318
+FL P KKLL EEESQLI QIQ+L +LEE+K LQSQFGREPTMAEWA+G GL C A
Sbjct: 1 MFLWGPETKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYA 60
Query: 319 LQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFKPQVG 378
LQ +LR G RS+EKLI ANLRMV+HVAK Y GRGLS QDLLQEGSMGL+KSV+KFKPQ G
Sbjct: 61 LQTQLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAG 120
Query: 379 CRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTKEDLA 438
CRF SYAYWWI+Q IR+A+F HSRTIRLPE VYT LGK++EAKK Y +EGN+ PTKE+LA
Sbjct: 121 CRFASYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELA 180
Query: 439 RRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELMRRHV 498
R++G++ DK+ LL ARIP+SMQQTVWTDQ+TT+QEITADT+IE+PD V+K+LMRRH
Sbjct: 181 RKIGVTVDKLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHA 240
Query: 499 LNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLKKCLAS 558
NLL TL P+ERRIIRLRFG EDG +KSLSE+G +FGLSKERVRQLE+RA KLK+CLAS
Sbjct: 241 RNLLHTLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLAS 300
Query: 559 QGLDAYADLLV 569
GLDAYA+LLV
Sbjct: 301 HGLDAYANLLV 311
>K4CQJ3_SOLLC (tr|K4CQJ3) Uncharacterized protein OS=Solanum lycopersicum
GN=Solyc09g008040.2 PE=4 SV=1
Length = 563
Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust.
Identities = 272/574 (47%), Positives = 360/574 (62%), Gaps = 18/574 (3%)
Query: 1 MESA-RTIFCASPPFPPRTHHWNTLPSSSYTSVLMFREQAAPTVSSRSTSVSAQKFPTSV 59
ME+A R + + P F +T N +SVLM E AAP +SS + + P S
Sbjct: 1 MEAAGRNLLSSPPTFSQKTQLRNC-----SSSVLMLHEHAAPVLSSVPHTYLGRYVPASA 55
Query: 60 LLQEQRDEQRPLLHVSKEDKTCQAVLNARQVDMSLVH-EENNIGKVDQVVDDFRQHLHLW 118
+ EQ E R LH+ KE+KT A ++ R V+ + EEN+ +Q ++ + L W
Sbjct: 56 IGPEQHFENRLQLHLVKEEKTSLATIDRRLVEAASSELEENDAVDSEQNINALQVQLLHW 115
Query: 119 PHLQNLLTS---SETGEVDASSTLQHVTVAERPANDVPCNAISLSRQALSPSKHEASVXX 175
P G + + H + ++ N P + ++L+R+AL SK EA++
Sbjct: 116 PGPSYSFPPYYLKGKGPLSPNKEPLH-SKGDKLMNFEPHSVVALARKALLASK-EAALLA 173
Query: 176 XXXXXXXXXXXXXXXXXXXXXPSRRSNKTVRSTRLLEXXXXXXXXXXXXXXDNDTYLARK 235
+ +TVRSTR +E +T
Sbjct: 174 EDSKLLDDSHFPNFLSTHLVDDKLKEQRTVRSTRFIERQSRKRGAPKPIQEVQET----- 228
Query: 236 DDPQERIRVKRKINEAFDQNDPQRLFLRSP-GKKLLPIEEESQLIVQIQDLLKLEELKTS 294
++ R V+RK+NE+ D NDP R+FL P K+LL +EES+LIV+IQ +KL+E+K
Sbjct: 229 NNRSGRPDVRRKVNESIDLNDPLRMFLWGPETKQLLTAKEESELIVKIQISMKLQEVKHQ 288
Query: 295 LQSQFGREPTMAEWAEGAGLKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLS 354
LQ QF REPT EWAE AG+ R L+ +L G SREKLI ANLRMV+H+AK YQGRGL+
Sbjct: 289 LQIQFAREPTSLEWAEAAGITSRELKSQLLSGKSSREKLINANLRMVVHIAKQYQGRGLN 348
Query: 355 LQDLLQEGSMGLLKSVKKFKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQL 414
LQDLLQEGSMGL+KSV+KFKPQ GCRF +YAYWWI+Q++RKAIF HSRTIRLPE VY L
Sbjct: 349 LQDLLQEGSMGLMKSVEKFKPQAGCRFPTYAYWWIRQSVRKAIFQHSRTIRLPENVYALL 408
Query: 415 GKILEAKKLYIQEGNLRPTKEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQ 474
K+ +AK+ I++GN PTKED+A G+S +++ +LL R P+SMQQ+VW+DQ+TTFQ
Sbjct: 409 SKVKDAKRECIRQGNRHPTKEDIASCAGMSVERLQNLLSNVRTPLSMQQSVWSDQDTTFQ 468
Query: 475 EITADTSIESPDSSVSKELMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIF 534
EITAD +IE+P+ SVSK+LMRRH+ LL+ L PKER+IIRLRFG DG+ KSLSE+G +F
Sbjct: 469 EITADNAIEAPELSVSKQLMRRHIRGLLNVLSPKERKIIRLRFGIGDGKPKSLSEIGAVF 528
Query: 535 GLSKERVRQLENRAFYKLKKCLASQGLDAYADLL 568
GLSKERVRQLE RA YKLK+ L GLDAY+DLL
Sbjct: 529 GLSKERVRQLETRALYKLKQNLNKHGLDAYSDLL 562
>M1BY22_SOLTU (tr|M1BY22) Uncharacterized protein OS=Solanum tuberosum
GN=PGSC0003DMG400021553 PE=4 SV=1
Length = 562
Score = 473 bits (1218), Expect = e-131, Method: Compositional matrix adjust.
Identities = 272/574 (47%), Positives = 358/574 (62%), Gaps = 19/574 (3%)
Query: 1 MESA-RTIFCASPPFPPRTHHWNTLPSSSYTSVLMFREQAAPTVSSRSTSVSAQKFPTSV 59
ME+A R + + P F +T N +SVLM E AAP +SS + + P S
Sbjct: 1 MEAAGRNLLSSPPTFSQKTQLRNC-----SSSVLMLHEHAAPVLSSVPHAYLGRHVPASA 55
Query: 60 LLQEQRDEQRPLLHVSKEDKTCQAVLNARQVDMSLVH-EENNIGKVDQVVDDFRQHLHLW 118
+ EQ+ E R LH+ KE+KT A ++ R VD + EEN+ +Q ++ + L
Sbjct: 56 IGPEQQFENRLQLHLVKEEKTSLATIDRRLVDAASSELEENDAVDSEQNINALQVQLLRC 115
Query: 119 PHLQNLLTS---SETGEVDASSTLQHVTVAERPANDVPCNAISLSRQALSPSKHEASVXX 175
P G + + H + ++ N P + ++L+R+AL S+ EA++
Sbjct: 116 PGPSYSFPPYYLKGKGPLSPNKEPLH-SKGDKLMNFEPHSVVALARKALLASR-EAALLA 173
Query: 176 XXXXXXXXXXXXXXXXXXXXXPSRRSNKTVRSTRLLEXXXXXXXXXXXXXXDNDTYLARK 235
+ +TVRSTR E +T + +
Sbjct: 174 EDSKLLDDSNFPNFLSTNLVDDKLKEQRTVRSTRFTERQSRKRGAPKPTQQVQETNRSGR 233
Query: 236 DDPQERIRVKRKINEAFDQNDPQRLFLRSP-GKKLLPIEEESQLIVQIQDLLKLEELKTS 294
D V+RK+NE+ D NDP R+FL P K+LL +EES+LIV+IQ +KL+E+K
Sbjct: 234 PD------VRRKVNESIDLNDPLRMFLWGPETKQLLTAKEESELIVKIQISMKLQEVKHQ 287
Query: 295 LQSQFGREPTMAEWAEGAGLKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLS 354
LQ QF EPT EWAE AG+ R L+ +L G SREKLI ANLRMV+H+AK YQGRGL+
Sbjct: 288 LQIQFAHEPTSVEWAEAAGITSRELKSQLLSGKSSREKLINANLRMVVHIAKQYQGRGLN 347
Query: 355 LQDLLQEGSMGLLKSVKKFKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQL 414
LQDLLQEGSMGL+KSV+KFKPQ GCRF +YAYWWI+Q++RKAIF HSRTIRLPE VY L
Sbjct: 348 LQDLLQEGSMGLMKSVEKFKPQAGCRFPTYAYWWIRQSVRKAIFQHSRTIRLPENVYALL 407
Query: 415 GKILEAKKLYIQEGNLRPTKEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQ 474
K+ +AKK IQ+GN PTKED+A G+S +++ +LL R P+SMQQ+VW+DQ+TTFQ
Sbjct: 408 SKVKDAKKECIQQGNRYPTKEDIASCAGMSVERLQNLLSNVRTPLSMQQSVWSDQDTTFQ 467
Query: 475 EITADTSIESPDSSVSKELMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIF 534
EITAD +IE+P+ SVSK+LMRRH+ LL+ L PKER+IIRLRFG DG+ KSLSE+G +F
Sbjct: 468 EITADNAIEAPELSVSKQLMRRHIRGLLNVLSPKERKIIRLRFGIGDGKPKSLSEIGTVF 527
Query: 535 GLSKERVRQLENRAFYKLKKCLASQGLDAYADLL 568
GLSKERVRQLE RA YKLK+ L GLDAY+DLL
Sbjct: 528 GLSKERVRQLETRALYKLKQNLNKHGLDAYSDLL 561
>M4DL32_BRARP (tr|M4DL32) Uncharacterized protein OS=Brassica rapa subsp.
pekinensis GN=Bra017213 PE=4 SV=1
Length = 533
Score = 473 bits (1218), Expect = e-131, Method: Compositional matrix adjust.
Identities = 270/573 (47%), Positives = 359/573 (62%), Gaps = 49/573 (8%)
Query: 3 SARTIFCASPPFPPRTHHWNTLPSSSYTSVLMFREQAA-PTVSSRSTSVSAQKFPTSVLL 61
+ + + +SP FP +TH N SS +SV+M EQ A P ++SR + ++ FP SVL
Sbjct: 4 TTKNLVSSSPSFPTKTHLKNGF--SSPSSVVMLHEQTATPVINSRHLASLSRHFPASVLS 61
Query: 62 QEQRDEQRP--LLHVSKEDKTCQAV-LNARQVDMSLVHEENNIGKVDQVVDDFRQHLHLW 118
QE R+E RP L H +ED+T Q + L RQ D + E+ + F Q L
Sbjct: 62 QEPREESRPPPLSHSLREDRTSQQLTLERRQFDGLVSSRED---------EKFEQQLLQS 112
Query: 119 PHLQNLLTSSETGEVDASSTLQHVTVAERPANDVPCNAISLSRQALSPSKHEASVXXXXX 178
L NLL S V P D A++L+ +ALS SK A +
Sbjct: 113 AGLWNLLLSPSPTVVS-------------PLED----AVALAHKALSASKQAALLAEDSE 155
Query: 179 XXXXXXXXXXXXXXXXXXPSRRSNKTVRSTRLLEXXXXXXXXXXXXXXDNDT-YLARKDD 237
S VRS +LLE DN++ YL +K +
Sbjct: 156 TAAPPTSSSM---------SLEEGTVVRSKKLLERRARNRRAPKPNGLDNESSYLPQKSN 206
Query: 238 PQERIRVKRKINEAFDQNDPQRLFLRSP-GKKLLPIEEESQLIVQIQDLLKLEELKTSLQ 296
K+K+ + FD +D +LFL P K+LL +EE++LI IQ+L+KLE++KT L+
Sbjct: 207 ------AKKKMRQGFDNDDSLQLFLWGPETKQLLTAKEEAELITHIQNLIKLEKVKTKLE 260
Query: 297 SQFGREPTMAEWAEGAGLKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQ 356
SQ G EPT+AEWAE G+ L+ ++ G SREKLI ANLR+V+H+AK YQ RGL+ Q
Sbjct: 261 SQNGCEPTIAEWAEALGISGPVLKSEIHRGRSSREKLITANLRLVVHIAKQYQNRGLNFQ 320
Query: 357 DLLQEGSMGLLKSVKKFKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGK 416
DLLQEGSMGL+KSV+KFKPQ G RF +YAYWWI+Q+IRK+IF +SRTIRLPE VY LGK
Sbjct: 321 DLLQEGSMGLMKSVEKFKPQSGFRFATYAYWWIRQSIRKSIFQNSRTIRLPENVYMLLGK 380
Query: 417 ILEAKKLYIQEGNLRPTKEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEI 476
+ EA+K +QEGN P+KE+LA VG+S +K+ LLY R P+SMQQ +W+DQ+ TFQE+
Sbjct: 381 VSEARKTCVQEGNYLPSKEELAGHVGVSTEKLDKLLYNTRTPLSMQQPIWSDQDITFQEV 440
Query: 477 TADTSIESPDSSVSKELMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGL 536
T D+ IE+PD SV K++MR HV NLL+ L PKER+II+LRFG + G+Q+SLSE+GEI+GL
Sbjct: 441 TPDSGIETPDMSVGKQMMRNHVRNLLNVLSPKERKIIKLRFGIDGGKQRSLSEIGEIYGL 500
Query: 537 SKERVRQLENRAFYKLKKCLASQGLDAYADLLV 569
SKERVRQLE+RA Y+LK+ + S GL+AYADLLV
Sbjct: 501 SKERVRQLESRALYRLKQNMNSHGLNAYADLLV 533
>M1BY20_SOLTU (tr|M1BY20) Uncharacterized protein OS=Solanum tuberosum
GN=PGSC0003DMG400021553 PE=4 SV=1
Length = 582
Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust.
Identities = 272/594 (45%), Positives = 358/594 (60%), Gaps = 39/594 (6%)
Query: 1 MESA-RTIFCASPPFPPRTHHWNTLPSSSYTSVLMFREQAAPTVSSRSTSVSAQKFPTSV 59
ME+A R + + P F +T N +SVLM E AAP +SS + + P S
Sbjct: 1 MEAAGRNLLSSPPTFSQKTQLRNC-----SSSVLMLHEHAAPVLSSVPHAYLGRHVPASA 55
Query: 60 LLQEQRDEQRPLLHVSKEDKTCQAVLNARQVDMSLVH-EENNIGKVDQVVDDFRQHLHLW 118
+ EQ+ E R LH+ KE+KT A ++ R VD + EEN+ +Q ++ + L
Sbjct: 56 IGPEQQFENRLQLHLVKEEKTSLATIDRRLVDAASSELEENDAVDSEQNINALQVQLLRC 115
Query: 119 PHLQNLLTS---SETGEVDASSTLQHVTVAERPANDVPCNAISLSRQALSPSKHEASVXX 175
P G + + H + ++ N P + ++L+R+AL S+ EA++
Sbjct: 116 PGPSYSFPPYYLKGKGPLSPNKEPLH-SKGDKLMNFEPHSVVALARKALLASR-EAALLA 173
Query: 176 XXXXXXXXXXXXXXXXXXXXXPSRRSNKTVRSTRLLEXXXXXXXXXXXXXXDNDTYLARK 235
+ +TVRSTR E +T + +
Sbjct: 174 EDSKLLDDSNFPNFLSTNLVDDKLKEQRTVRSTRFTERQSRKRGAPKPTQQVQETNRSGR 233
Query: 236 DDPQERIRVKRKINEAFDQNDPQRLFLRSP-GKKLLPIEEESQLIVQIQDLLKLEELKTS 294
D V+RK+NE+ D NDP R+FL P K+LL +EES+LIV+IQ +KL+E+K
Sbjct: 234 PD------VRRKVNESIDLNDPLRMFLWGPETKQLLTAKEESELIVKIQISMKLQEVKHQ 287
Query: 295 LQSQFGREPTMAEWAEGAGLKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLS 354
LQ QF EPT EWAE AG+ R L+ +L G SREKLI ANLRMV+H+AK YQGRGL+
Sbjct: 288 LQIQFAHEPTSVEWAEAAGITSRELKSQLLSGKSSREKLINANLRMVVHIAKQYQGRGLN 347
Query: 355 LQDLLQEGSMGLLKSVKKFKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQL 414
LQDLLQEGSMGL+KSV+KFKPQ GCRF +YAYWWI+Q++RKAIF HSRTIRLPE VY L
Sbjct: 348 LQDLLQEGSMGLMKSVEKFKPQAGCRFPTYAYWWIRQSVRKAIFQHSRTIRLPENVYALL 407
Query: 415 GKILEAKKLYIQEGNLRPTKEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTF- 473
K+ +AKK IQ+GN PTKED+A G+S +++ +LL R P+SMQQ+VW+DQ+TTF
Sbjct: 408 SKVKDAKKECIQQGNRYPTKEDIASCAGMSVERLQNLLSNVRTPLSMQQSVWSDQDTTFQ 467
Query: 474 -------------------QEITADTSIESPDSSVSKELMRRHVLNLLSTLRPKERRIIR 514
QEITAD +IE+P+ SVSK+LMRRH+ LL+ L PKER+IIR
Sbjct: 468 EIFDLVLTVAKERISFFSIQEITADNAIEAPELSVSKQLMRRHIRGLLNVLSPKERKIIR 527
Query: 515 LRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLKKCLASQGLDAYADLL 568
LRFG DG+ KSLSE+G +FGLSKERVRQLE RA YKLK+ L GLDAY+DLL
Sbjct: 528 LRFGIGDGKPKSLSEIGTVFGLSKERVRQLETRALYKLKQNLNKHGLDAYSDLL 581
>M1BY21_SOLTU (tr|M1BY21) Uncharacterized protein OS=Solanum tuberosum
GN=PGSC0003DMG400021553 PE=4 SV=1
Length = 311
Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust.
Identities = 202/310 (65%), Positives = 247/310 (79%), Gaps = 1/310 (0%)
Query: 260 LFLRSP-GKKLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGLKCRA 318
+FL P K+LL +EES+LIV+IQ +KL+E+K LQ QF EPT EWAE AG+ R
Sbjct: 1 MFLWGPETKQLLTAKEESELIVKIQISMKLQEVKHQLQIQFAHEPTSVEWAEAAGITSRE 60
Query: 319 LQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFKPQVG 378
L+ +L G SREKLI ANLRMV+H+AK YQGRGL+LQDLLQEGSMGL+KSV+KFKPQ G
Sbjct: 61 LKSQLLSGKSSREKLINANLRMVVHIAKQYQGRGLNLQDLLQEGSMGLMKSVEKFKPQAG 120
Query: 379 CRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTKEDLA 438
CRF +YAYWWI+Q++RKAIF HSRTIRLPE VY L K+ +AKK IQ+GN PTKED+A
Sbjct: 121 CRFPTYAYWWIRQSVRKAIFQHSRTIRLPENVYALLSKVKDAKKECIQQGNRYPTKEDIA 180
Query: 439 RRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELMRRHV 498
G+S +++ +LL R P+SMQQ+VW+DQ+TTFQEITAD +IE+P+ SVSK+LMRRH+
Sbjct: 181 SCAGMSVERLQNLLSNVRTPLSMQQSVWSDQDTTFQEITADNAIEAPELSVSKQLMRRHI 240
Query: 499 LNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLKKCLAS 558
LL+ L PKER+IIRLRFG DG+ KSLSE+G +FGLSKERVRQLE RA YKLK+ L
Sbjct: 241 RGLLNVLSPKERKIIRLRFGIGDGKPKSLSEIGTVFGLSKERVRQLETRALYKLKQNLNK 300
Query: 559 QGLDAYADLL 568
GLDAY+DLL
Sbjct: 301 HGLDAYSDLL 310
>I1K2F4_SOYBN (tr|I1K2F4) Uncharacterized protein (Fragment) OS=Glycine max PE=4
SV=1
Length = 312
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 199/282 (70%), Positives = 231/282 (81%), Gaps = 4/282 (1%)
Query: 197 PSRRSNKTVRSTRLLEXXXXXXXXXXXXXXDNDTYLARKDDPQERIRVKRKINEAFDQND 256
PS NKTVRSTRLLE D++TYLARKDD QE++R ++K NE DQ+D
Sbjct: 11 PSIGRNKTVRSTRLLERRSKQRKVPKSKVIDDETYLARKDDAQEKLRAEKKKNEEHDQDD 70
Query: 257 PQRLFLRSP-GKKLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGLK 315
P RLFL P K+LL +E+ESQLI QIQDLL+LEE+KT+LQSQFGREPTMAEWAEGAGL
Sbjct: 71 PLRLFLWGPETKQLLTLEQESQLISQIQDLLRLEEVKTNLQSQFGREPTMAEWAEGAGLN 130
Query: 316 CRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFKP 375
CR LQ +L G RSREKLI+ANLRMV+HVAK+YQGRGLSLQDLLQEGSMGL+KSV+KF P
Sbjct: 131 CRLLQSQLHSGIRSREKLIQANLRMVVHVAKSYQGRGLSLQDLLQEGSMGLMKSVEKFNP 190
Query: 376 QVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLP---EKVYTQLGKILEAKKLYIQEGNLRP 432
G RFG+YA+WWI+QAIRKA+F HSRTIRLP EKV+ LGK++EAKKLYIQEGNL P
Sbjct: 191 LAGSRFGNYAFWWIRQAIRKAVFRHSRTIRLPINLEKVFILLGKVIEAKKLYIQEGNLHP 250
Query: 433 TKEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQ 474
TKE+LARRVG++ +KI LL+ ARIP+SMQQTVW DQNTTFQ
Sbjct: 251 TKEELARRVGVTVEKIDKLLFSARIPISMQQTVWADQNTTFQ 292
>M0RSY5_MUSAM (tr|M0RSY5) Uncharacterized protein OS=Musa acuminata subsp.
malaccensis PE=4 SV=1
Length = 579
Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust.
Identities = 242/593 (40%), Positives = 345/593 (58%), Gaps = 38/593 (6%)
Query: 1 MESARTIFC-ASPPFPPRTHHWNTLPSSSYTSVLMFREQAA-PTVSSRSTSVSAQKFPTS 58
M++ R++ S P P+ H L + SV M +QA+ P + +T V S
Sbjct: 1 MKACRSLLSPVSIPMVPKNH----LRTPYTNSVPMLLDQASQPMIHVPATQV-VHHITAS 55
Query: 59 VLLQEQRDEQRPLLHVSKEDKTCQAVLNARQVDMSL-VHEENNIGKVDQVVDDFRQHLHL 117
VL +EQ D+ + H++K +K+ QA + + EE + +Q + L
Sbjct: 56 VLSKEQCDDLK-TNHLNKVEKSVQATPDKWLTEAGRSCSEEREKHEFNQYLRYLECQLSY 114
Query: 118 WPHL-----------QNLLTSSETGEVDASSTLQHVTVAERPAND----VPCNAISLSRQ 162
P L Q+L S G + S+ + + A + N P + ++L+++
Sbjct: 115 QPSLWYPFPPLDEEKQSLPVS--VGPEETSTCVSGDSSAMQVENTKDCITPADVLALAKK 172
Query: 163 ALSPSKHEASVXXXXXXXXXXXXXXXXXXXXXXXPSR---RSNKTVRSTRLLEXXXXXXX 219
A+ SK AS+ + TVRS +LLE
Sbjct: 173 AMIASKIAASLVEQSNILGIEVDKSNFLGFDEGSNDDTFFKEETTVRSRKLLERRSKKRK 232
Query: 220 XXXXXXXDNDTYLARKDDPQERIRVKRKINEAFDQNDPQRLFLRSP-GKKLLPIEEESQL 278
N I +KI++ D NDP RLFL P K+LL ++EE L
Sbjct: 233 VSK-----NPNNFVHHGASSVTINQSKKIDKRLDSNDPLRLFLWGPETKQLLTVKEEKDL 287
Query: 279 IVQIQ--DLLKLEELKTSLQSQFGREPTMAEWAEGAGLKCRALQMKLRCGNRSREKLIKA 336
V+I+ DL++LEE+K LQSQ REPT+AEWA+ G+ C+ LQ L G R+REK+I A
Sbjct: 288 FVKIEACDLMRLEEVKERLQSQSDREPTLAEWAQAVGMSCQDLQSCLSSGRRNREKMIYA 347
Query: 337 NLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFKPQVGCRFGSYAYWWIKQAIRKA 396
N R+V+HVA+ Y+G+GL++QDLLQEGS GL+KS++KFKP+ GCRF +YAYWWI+Q+I+KA
Sbjct: 348 NFRLVVHVARQYEGKGLNIQDLLQEGSRGLMKSLEKFKPRAGCRFPTYAYWWIRQSIKKA 407
Query: 397 IFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTKEDLARRVGISEDKISSLLYVAR 456
IF +SRTIRLPE + +L I EA++L IQEG L PT E++A+RVGI+ K+ LL +R
Sbjct: 408 IFKNSRTIRLPENAFARLKSIREARRLCIQEG-LLPTNEEIAKRVGITVQKLEILLLNSR 466
Query: 457 IPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELMRRHVLNLLSTLRPKERRIIRLR 516
P+S+Q+ W DQ+ TFQE AD IE PD ++K++MR+HV NLL+ L+P+ER I++ R
Sbjct: 467 YPISIQRHPWLDQDVTFQETVADPKIEIPDLVIAKQMMRQHVRNLLNILKPRERVIVQYR 526
Query: 517 FGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLKKCLASQGLDAYADLLV 569
FG EQKSLSE+G ++GLSKERVRQLE++A KL+KCL SQGL+AY DLL+
Sbjct: 527 FGIRCSEQKSLSEIGAMYGLSKERVRQLESQALGKLRKCLQSQGLEAYLDLLI 579
>R0FW66_9BRAS (tr|R0FW66) Uncharacterized protein OS=Capsella rubella
GN=CARUB_v10022939mg PE=4 SV=1
Length = 456
Score = 361 bits (926), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 210/477 (44%), Positives = 281/477 (58%), Gaps = 28/477 (5%)
Query: 1 MESARTIFCASPPFPPRTHHWNTLPSSSYTSVLMFREQAAP--TVSSRSTSVSAQKFPTS 58
ME+ R + +SP F +TH N SS + V+M EQ A V+SR + ++ FP S
Sbjct: 1 MEATRNLVSSSPSFQTKTHLKNY---SSPSLVVMLHEQTATPVVVNSRHLNSLSRHFPAS 57
Query: 59 VLLQEQRDEQRPLLHVSKEDKTCQAVLNARQVDMSLVHEENNIGKVDQVVDDFRQHLHLW 118
VL QE R+E RPL H +ED+T Q L RQ D + E+ + F Q L
Sbjct: 58 VLSQEPREESRPLSHAFREDRTSQLTLERRQFDELVSSRED---------ETFEQQLIQS 108
Query: 119 PHLQNLLTSSETGEVDASSTLQHVTVAERPANDVPCNAISLSRQALSPSKHEASVXXXXX 178
L NLL S T E + + + AE C+ ++L+++ALS SK +A++
Sbjct: 109 AGLWNLLISPITAEKQLPAAVSPLADAEL------CDVVALAQKALSASK-QAALLADDT 161
Query: 179 XXXXXXXXXXXXXXXXXXPSRRSNKTVRSTRLLEXXXXXXXXXXXXXXDNDTYLARKDDP 238
VRS RLLE DN+ Y+ +K +
Sbjct: 162 EANPSDNSGDSLSTSSSMSLPEEGTIVRSKRLLERRAKNRRAPKSNDVDNEGYVPQKSN- 220
Query: 239 QERIRVKRKINEAFDQNDPQRLFLRSP-GKKLLPIEEESQLIVQIQDLLKLEELKTSLQS 297
K+K + D +D +LFL P K+LL +EE++LI IQ LLKLE++KT L+S
Sbjct: 221 -----AKKKFKQGVDTDDALQLFLWGPETKQLLTAKEEAELISHIQHLLKLEKVKTKLES 275
Query: 298 QFGREPTMAEWAEGAGLKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQD 357
Q G EPT+ EWAE G+ L+ ++ G SREKLI ANLR+V+H+AK YQ RGL+ QD
Sbjct: 276 QNGCEPTIGEWAEAMGISSPVLKSEIHRGRSSREKLITANLRLVVHIAKQYQNRGLNFQD 335
Query: 358 LLQEGSMGLLKSVKKFKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKI 417
LLQEGSMGL+KSV+KFKPQ GCRF +YAYWWI+Q+IRK+IF +SRTIRLPE VY LGK+
Sbjct: 336 LLQEGSMGLMKSVEKFKPQSGCRFATYAYWWIRQSIRKSIFQNSRTIRLPENVYMLLGKV 395
Query: 418 LEAKKLYIQEGNLRPTKEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQ 474
EA+K +QEGN RP+KE LA VG+S++K+ LLY R P+SMQQ +W+DQ+TTFQ
Sbjct: 396 SEARKTCVQEGNYRPSKEQLAGHVGVSKEKLDKLLYNTRTPLSMQQPIWSDQDTTFQ 452
>G7L2W1_MEDTR (tr|G7L2W1) RNA polymerase sigma factor rpoD OS=Medicago truncatula
GN=MTR_7g101610 PE=4 SV=1
Length = 365
Score = 331 bits (849), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 155/244 (63%), Positives = 197/244 (80%), Gaps = 1/244 (0%)
Query: 326 GNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFKPQVGCRFGSYA 385
GNRS++KLI ANLR+V+H+AK YQG S L EGSMGL++SV+KFKPQ GCRF +YA
Sbjct: 123 GNRSKDKLIHANLRLVVHIAKYYQG-AWSQPXGLIEGSMGLMRSVEKFKPQAGCRFSTYA 181
Query: 386 YWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTKEDLARRVGISE 445
YWWI+Q IR+A+F HS+TIRLPE Y LGKI EAKK YI+EGNL PTKE++A+RVGI+
Sbjct: 182 YWWIRQTIRRALFLHSKTIRLPENFYALLGKIAEAKKSYIKEGNLHPTKEEIAKRVGITV 241
Query: 446 DKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELMRRHVLNLLSTL 505
D++ LL+ R P+SM++ VW D +TTFQEITAD+SIE P+ V+K+LMR HV NLL L
Sbjct: 242 DRLEMLLFSTRTPLSMERAVWADSDTTFQEITADSSIEIPNVCVAKQLMRSHVRNLLGIL 301
Query: 506 RPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLKKCLASQGLDAYA 565
PKER+++RLRFG EDG +KSL+E+G++ G+ KERVRQLE++A KLK+CL SQ LDAY
Sbjct: 302 PPKERKVLRLRFGIEDGYEKSLTEIGKVLGVCKERVRQLESQALNKLKQCLVSQQLDAYV 361
Query: 566 DLLV 569
DL+V
Sbjct: 362 DLIV 365
>K4A7Y8_SETIT (tr|K4A7Y8) Uncharacterized protein OS=Setaria italica
GN=Si034994m.g PE=4 SV=1
Length = 554
Score = 331 bits (849), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 157/320 (49%), Positives = 223/320 (69%), Gaps = 2/320 (0%)
Query: 251 AFDQNDPQRLFLRS-PGKKLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWA 309
D ++P +LFLR + L +EE Q+ QIQ+L+KLEE + L+ Q GREPT+AEWA
Sbjct: 236 VLDPDEPFKLFLRDRETTEFLTAKEEKQMFSQIQNLMKLEEAQRKLEVQCGREPTVAEWA 295
Query: 310 EGAGLKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKS 369
G+ CR LQ +R G R REK+ ++N R+V+HVA+ Y+G GL +QDL+Q+G GL+K+
Sbjct: 296 AAVGMSCRELQSSIRIGRRCREKMARSNFRLVIHVARKYEGYGLDIQDLVQDGCCGLMKT 355
Query: 370 VKKFKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGN 429
+KF P GCRF +YAYWWI+Q+I+K+IF +SR IRLPE V+ L K+ +A+ I EG
Sbjct: 356 FEKFNPSKGCRFPTYAYWWIRQSIKKSIFKNSRLIRLPESVFALLRKVGKARLECIMEGE 415
Query: 430 LRPTKEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSV 489
+PT E++ARR GI+ +K++ L R P SMQ VW+D T+QEIT D + E P+ SV
Sbjct: 416 -QPTNENVARRAGITIEKLARLRAKTRKPRSMQDRVWSDDGVTYQEITEDPNFEPPELSV 474
Query: 490 SKELMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAF 549
+ +MR+ V N L+ L P+E+ II RFG DGE K+L +G+++GLSKER+RQ++N+A
Sbjct: 475 DRLMMRQQVRNFLAILSPREKEIIEHRFGIHDGEPKTLHVIGDMYGLSKERIRQVQNKAL 534
Query: 550 YKLKKCLASQGLDAYADLLV 569
KLK+ +++QG D Y DLL
Sbjct: 535 DKLKRSVSAQGFDVYFDLLT 554
>J3MRH6_ORYBR (tr|J3MRH6) Uncharacterized protein OS=Oryza brachyantha
GN=OB08G17050 PE=4 SV=1
Length = 577
Score = 330 bits (846), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 160/319 (50%), Positives = 218/319 (68%), Gaps = 2/319 (0%)
Query: 252 FDQNDPQRLFLRS-PGKKLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAE 310
D ++P RLFLR + L +EE L +IQ L+KLEE L+ Q GREPT+AEWAE
Sbjct: 260 LDPDEPFRLFLRDRETTEFLTAKEERHLFSKIQILMKLEEAHRKLEVQCGREPTLAEWAE 319
Query: 311 GAGLKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSV 370
G+ + LQ +R G R REK+ ++N R+V+HVA+ Y+G GL +QDL+Q+G GL+K+
Sbjct: 320 AVGMSSKELQSSIRTGRRCREKMARSNFRLVIHVARKYEGYGLDIQDLVQDGCCGLMKTF 379
Query: 371 KKFKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNL 430
+KF P GCRF +YAYWWI+Q+I+K+IF +SR IRLPE VY L K+ +A+ I EG
Sbjct: 380 EKFNPSKGCRFPTYAYWWIRQSIKKSIFKNSRLIRLPESVYALLRKVGKARMECIMEGE- 438
Query: 431 RPTKEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVS 490
+PT ++ARR GI+ +K++ L R P SMQ VW+D+ TFQEIT D ++E PD SV
Sbjct: 439 QPTNANVARRAGITIEKLAKLRAKTRKPRSMQDHVWSDEGVTFQEITEDPNVEPPDLSVD 498
Query: 491 KELMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFY 550
+ +MR+ V + L L P+E+ II RFG DGE K+L +G++FGLSKER+RQL+NRA
Sbjct: 499 RMMMRQQVRDFLGILSPREKEIIEHRFGIHDGEPKTLHVIGDMFGLSKERIRQLQNRALQ 558
Query: 551 KLKKCLASQGLDAYADLLV 569
KLK ++QG D Y DLL
Sbjct: 559 KLKTSASTQGFDVYFDLLT 577
>M0WB57_HORVD (tr|M0WB57) Uncharacterized protein OS=Hordeum vulgare var.
distichum PE=4 SV=1
Length = 553
Score = 330 bits (846), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 168/366 (45%), Positives = 235/366 (64%), Gaps = 4/366 (1%)
Query: 205 VRSTRLLEXXXXXXXXXXXXXXDNDTYLARKDDPQERIRVKRKINEAFDQNDPQRLFLRS 264
+RSTRLLE D D +++ R K K ++P RLFLR
Sbjct: 188 IRSTRLLERRSKKRNVPRAST-STDVVQCSVADSKKKDRPK-KYGRVLGPDEPFRLFLRD 245
Query: 265 -PGKKLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGLKCRALQMKL 323
+ L +EE L QIQ+L++LEE + L+ Q GREPT+ EWA+ G+ C+ LQ +
Sbjct: 246 RETTEFLTAKEERHLFSQIQNLMRLEEAQRRLEEQCGREPTLPEWAQAVGMSCKDLQSSI 305
Query: 324 RCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFKPQVGCRFGS 383
G R REK+ ++N R+V+HVA+ YQG GL ++DL+Q+G GL+K+ +KF P GCRF +
Sbjct: 306 HIGRRCREKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPT 365
Query: 384 YAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTKEDLARRVGI 443
YAYWWI+QAI+K+IF HSR IRLPE VY +L K+ +A+ I EG +PT +++ARR GI
Sbjct: 366 YAYWWIRQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILEGE-QPTNQNVARRAGI 424
Query: 444 SEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELMRRHVLNLLS 503
S +K++ L R P SMQ VW++ TFQEIT D +I+SPD V + +MR+ V L
Sbjct: 425 SIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLG 484
Query: 504 TLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLKKCLASQGLDA 563
L +E+ I+ RFG DGE K+L +G+++GLSKER+RQL+NRA KLK+ +++QG D
Sbjct: 485 ILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDV 544
Query: 564 YADLLV 569
Y DLL
Sbjct: 545 YLDLLT 550
>M0WB53_HORVD (tr|M0WB53) Uncharacterized protein OS=Hordeum vulgare var.
distichum PE=4 SV=1
Length = 550
Score = 330 bits (845), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 168/366 (45%), Positives = 235/366 (64%), Gaps = 4/366 (1%)
Query: 205 VRSTRLLEXXXXXXXXXXXXXXDNDTYLARKDDPQERIRVKRKINEAFDQNDPQRLFLRS 264
+RSTRLLE D D +++ R K K ++P RLFLR
Sbjct: 185 IRSTRLLERRSKKRNVPRAST-STDVVQCSVADSKKKDRPK-KYGRVLGPDEPFRLFLRD 242
Query: 265 -PGKKLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGLKCRALQMKL 323
+ L +EE L QIQ+L++LEE + L+ Q GREPT+ EWA+ G+ C+ LQ +
Sbjct: 243 RETTEFLTAKEERHLFSQIQNLMRLEEAQRRLEEQCGREPTLPEWAQAVGMSCKDLQSSI 302
Query: 324 RCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFKPQVGCRFGS 383
G R REK+ ++N R+V+HVA+ YQG GL ++DL+Q+G GL+K+ +KF P GCRF +
Sbjct: 303 HIGRRCREKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPT 362
Query: 384 YAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTKEDLARRVGI 443
YAYWWI+QAI+K+IF HSR IRLPE VY +L K+ +A+ I EG +PT +++ARR GI
Sbjct: 363 YAYWWIRQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILEGE-QPTNQNVARRAGI 421
Query: 444 SEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELMRRHVLNLLS 503
S +K++ L R P SMQ VW++ TFQEIT D +I+SPD V + +MR+ V L
Sbjct: 422 SIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLG 481
Query: 504 TLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLKKCLASQGLDA 563
L +E+ I+ RFG DGE K+L +G+++GLSKER+RQL+NRA KLK+ +++QG D
Sbjct: 482 ILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDV 541
Query: 564 YADLLV 569
Y DLL
Sbjct: 542 YLDLLT 547
>M0WB51_HORVD (tr|M0WB51) Uncharacterized protein OS=Hordeum vulgare var.
distichum PE=4 SV=1
Length = 515
Score = 329 bits (843), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 168/366 (45%), Positives = 235/366 (64%), Gaps = 4/366 (1%)
Query: 205 VRSTRLLEXXXXXXXXXXXXXXDNDTYLARKDDPQERIRVKRKINEAFDQNDPQRLFLRS 264
+RSTRLLE D D +++ R K K ++P RLFLR
Sbjct: 150 IRSTRLLERRSKKRNVPRASTS-TDVVQCSVADSKKKDRPK-KYGRVLGPDEPFRLFLRD 207
Query: 265 -PGKKLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGLKCRALQMKL 323
+ L +EE L QIQ+L++LEE + L+ Q GREPT+ EWA+ G+ C+ LQ +
Sbjct: 208 RETTEFLTAKEERHLFSQIQNLMRLEEAQRRLEEQCGREPTLPEWAQAVGMSCKDLQSSI 267
Query: 324 RCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFKPQVGCRFGS 383
G R REK+ ++N R+V+HVA+ YQG GL ++DL+Q+G GL+K+ +KF P GCRF +
Sbjct: 268 HIGRRCREKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPT 327
Query: 384 YAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTKEDLARRVGI 443
YAYWWI+QAI+K+IF HSR IRLPE VY +L K+ +A+ I EG +PT +++ARR GI
Sbjct: 328 YAYWWIRQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILEGE-QPTNQNVARRAGI 386
Query: 444 SEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELMRRHVLNLLS 503
S +K++ L R P SMQ VW++ TFQEIT D +I+SPD V + +MR+ V L
Sbjct: 387 SIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLG 446
Query: 504 TLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLKKCLASQGLDA 563
L +E+ I+ RFG DGE K+L +G+++GLSKER+RQL+NRA KLK+ +++QG D
Sbjct: 447 ILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDV 506
Query: 564 YADLLV 569
Y DLL
Sbjct: 507 YLDLLT 512
>M0WB48_HORVD (tr|M0WB48) Uncharacterized protein OS=Hordeum vulgare var.
distichum PE=4 SV=1
Length = 397
Score = 328 bits (840), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 168/366 (45%), Positives = 235/366 (64%), Gaps = 4/366 (1%)
Query: 205 VRSTRLLEXXXXXXXXXXXXXXDNDTYLARKDDPQERIRVKRKINEAFDQNDPQRLFLRS 264
+RSTRLLE D D +++ R K K ++P RLFLR
Sbjct: 32 IRSTRLLERRSKKRNVPRASTS-TDVVQCSVADSKKKDRPK-KYGRVLGPDEPFRLFLRD 89
Query: 265 -PGKKLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGLKCRALQMKL 323
+ L +EE L QIQ+L++LEE + L+ Q GREPT+ EWA+ G+ C+ LQ +
Sbjct: 90 RETTEFLTAKEERHLFSQIQNLMRLEEAQRRLEEQCGREPTLPEWAQAVGMSCKDLQSSI 149
Query: 324 RCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFKPQVGCRFGS 383
G R REK+ ++N R+V+HVA+ YQG GL ++DL+Q+G GL+K+ +KF P GCRF +
Sbjct: 150 HIGRRCREKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPT 209
Query: 384 YAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTKEDLARRVGI 443
YAYWWI+QAI+K+IF HSR IRLPE VY +L K+ +A+ I EG +PT +++ARR GI
Sbjct: 210 YAYWWIRQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILEGE-QPTNQNVARRAGI 268
Query: 444 SEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELMRRHVLNLLS 503
S +K++ L R P SMQ VW++ TFQEIT D +I+SPD V + +MR+ V L
Sbjct: 269 SIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLG 328
Query: 504 TLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLKKCLASQGLDA 563
L +E+ I+ RFG DGE K+L +G+++GLSKER+RQL+NRA KLK+ +++QG D
Sbjct: 329 ILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDV 388
Query: 564 YADLLV 569
Y DLL
Sbjct: 389 YLDLLT 394
>M8A8U2_TRIUA (tr|M8A8U2) RNA polymerase sigma factor rpoD OS=Triticum urartu
GN=TRIUR3_06257 PE=4 SV=1
Length = 553
Score = 327 bits (838), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 168/372 (45%), Positives = 235/372 (63%), Gaps = 9/372 (2%)
Query: 205 VRSTRLLEXXXXXXXXXXXXXXDNDTYLARKDDPQERIRVKRKINEAFDQNDPQRLFLRS 264
+RSTRLLE D D +++ R K K ++P RLFLR
Sbjct: 181 IRSTRLLERRSKKRNVPRASTSSTDVVQCGVADSKKKDRPK-KYGRVLGPDEPFRLFLRD 239
Query: 265 -PGKKLLPIEEESQLIVQIQ------DLLKLEELKTSLQSQFGREPTMAEWAEGAGLKCR 317
+ L +EE L QIQ +L+KLEE + L++Q GREPT+ EWA+ G+ C+
Sbjct: 240 RETTEFLTAKEERHLFSQIQACSFFLNLMKLEEAQRRLEAQCGREPTLPEWAQAVGMSCK 299
Query: 318 ALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFKPQV 377
LQ + G R REK+ ++N R+V+HVA+ YQG GL ++DL+Q+G GL+K+ +KF P
Sbjct: 300 ELQSSIHIGRRCREKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSK 359
Query: 378 GCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTKEDL 437
GCRF +YAYWWI+QAI+K+IF HSR IRLPE VY +L K+ +A+ I EG +PT +++
Sbjct: 360 GCRFPTYAYWWIRQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILEGE-QPTNQNV 418
Query: 438 ARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELMRRH 497
ARR GI+ +K++ L R P SMQ VW++ TFQEIT D +I+ PD V + +MR+
Sbjct: 419 ARRAGITIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDPPDLVVDRIMMRQQ 478
Query: 498 VLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLKKCLA 557
V L L +E+ II RFG DGE K+L +G+++GLSKER+RQL+NRA KLK+ ++
Sbjct: 479 VREFLGILSTREKEIIEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVS 538
Query: 558 SQGLDAYADLLV 569
+QG D Y DLL
Sbjct: 539 TQGFDVYLDLLT 550
>Q84LK8_ORYSJ (tr|Q84LK8) Os08g0242800 protein OS=Oryza sativa subsp. japonica
GN=SIG6 PE=2 SV=1
Length = 572
Score = 327 bits (837), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 168/366 (45%), Positives = 234/366 (63%), Gaps = 6/366 (1%)
Query: 205 VRSTRLLEXXXXXXXXXXXXXXDNDTYLARKDDPQERIRVKRKINEAFDQNDPQRLFLRS 264
VRSTRLLE D ++ D ++ +K + ++P +LFLR
Sbjct: 212 VRSTRLLERRSKRRYAPRASIAD----VSCSADNSKKKEKSKKYGRVLEPDEPFKLFLRD 267
Query: 265 -PGKKLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGLKCRALQMKL 323
+ L +EE L +IQ L+K+EE L+ Q GREPT+AEWAE G+ + LQ +
Sbjct: 268 RETTEFLTAKEERHLFSKIQILMKIEEAHRKLEVQCGREPTLAEWAEAVGMSSKELQSSI 327
Query: 324 RCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFKPQVGCRFGS 383
R G R REK+ ++N R+V+HVA+ Y+G GL +QDL+Q+G GL+K+ +KF P GCRF +
Sbjct: 328 RTGRRCREKMARSNFRLVIHVARKYEGYGLDIQDLVQDGCSGLMKTFEKFNPSKGCRFPT 387
Query: 384 YAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTKEDLARRVGI 443
YAYWWI+Q+I+K+IF +SR IRLPE VY L K+ +A+ I EG +PT ++ARR GI
Sbjct: 388 YAYWWIRQSIKKSIFKNSRLIRLPESVYALLRKVGKARMECIMEGE-QPTNANVARRAGI 446
Query: 444 SEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELMRRHVLNLLS 503
+ +K++ L R P SMQ VW+D+ TFQEIT D ++E PD SV + +MR+ V + L
Sbjct: 447 TIEKLAKLRAKTRKPRSMQDHVWSDEGVTFQEITEDPNVEPPDLSVDRMMMRQQVRDFLG 506
Query: 504 TLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLKKCLASQGLDA 563
L P+E+ II RFG DGE K+L +G++FGLSKER+RQL+NRA KLK+ + QG D
Sbjct: 507 ILSPREKEIIEHRFGIHDGEPKTLHVIGDMFGLSKERIRQLQNRALEKLKRSASLQGFDV 566
Query: 564 YADLLV 569
Y DLL
Sbjct: 567 YFDLLT 572
>I1QGT9_ORYGL (tr|I1QGT9) Uncharacterized protein OS=Oryza glaberrima PE=4 SV=1
Length = 572
Score = 326 bits (836), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 168/366 (45%), Positives = 234/366 (63%), Gaps = 6/366 (1%)
Query: 205 VRSTRLLEXXXXXXXXXXXXXXDNDTYLARKDDPQERIRVKRKINEAFDQNDPQRLFLRS 264
VRSTRLLE D ++ D ++ +K + ++P +LFLR
Sbjct: 212 VRSTRLLERRSKRRYAPRASIAD----VSCSADNSKKKEKSKKYGRVLEPDEPFKLFLRD 267
Query: 265 -PGKKLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGLKCRALQMKL 323
+ L +EE L +IQ L+K+EE L+ Q GREPT+AEWAE G+ + LQ +
Sbjct: 268 RETTEFLTAKEERHLFSKIQILMKIEEAHRKLEVQCGREPTLAEWAEAVGMSSKELQSSI 327
Query: 324 RCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFKPQVGCRFGS 383
R G R REK+ ++N R+V+HVA+ Y+G GL +QDL+Q+G GL+K+ +KF P GCRF +
Sbjct: 328 RTGRRCREKMARSNFRLVIHVARKYEGYGLDIQDLVQDGCSGLMKTFEKFNPSKGCRFPT 387
Query: 384 YAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTKEDLARRVGI 443
YAYWWI+Q+I+K+IF +SR IRLPE VY L K+ +A+ I EG +PT ++ARR GI
Sbjct: 388 YAYWWIRQSIKKSIFKNSRLIRLPESVYALLRKVGKARMECIMEGE-QPTNANVARRAGI 446
Query: 444 SEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELMRRHVLNLLS 503
+ +K++ L R P SMQ VW+D+ TFQEIT D ++E PD SV + +MR+ V + L
Sbjct: 447 TIEKLAKLRAKTRKPRSMQDHVWSDEGVTFQEITEDPNVEPPDLSVDRMMMRQQVRDFLG 506
Query: 504 TLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLKKCLASQGLDA 563
L P+E+ II RFG DGE K+L +G++FGLSKER+RQL+NRA KLK+ + QG D
Sbjct: 507 ILSPREKEIIEHRFGIHDGEPKTLHVIGDMFGLSKERIRQLQNRALEKLKRSASLQGFDV 566
Query: 564 YADLLV 569
Y DLL
Sbjct: 567 YFDLLT 572
>I1GKK0_BRADI (tr|I1GKK0) Uncharacterized protein OS=Brachypodium distachyon
GN=BRADI1G00750 PE=4 SV=1
Length = 564
Score = 326 bits (835), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 156/319 (48%), Positives = 219/319 (68%), Gaps = 2/319 (0%)
Query: 252 FDQNDPQRLFLRSP-GKKLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAE 310
D ++P +LFLR P + L +EE QL ++Q+L+KLEE + L++Q GREP + EWA+
Sbjct: 244 LDPDEPFKLFLRDPETTEFLTAKEEKQLFSEVQNLMKLEEAQRRLEAQCGREPAIEEWAK 303
Query: 311 GAGLKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSV 370
G+ C+ LQ + G R REK+ ++N R+V+HVA+ YQG GL ++DL+Q+G GL+K+
Sbjct: 304 AVGMSCKDLQSSIHIGRRCREKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTF 363
Query: 371 KKFKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNL 430
+KF P GCRF +YAYWWI+QAI+K+IF HSR IRLPE VY L K+ +A+ I EG
Sbjct: 364 EKFNPSKGCRFPTYAYWWIRQAIKKSIFKHSRLIRLPESVYALLKKVGKARLECILEGE- 422
Query: 431 RPTKEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVS 490
+PT E++ARR GI+ +K++ L R S+Q VW D TFQEIT D +IE PD V
Sbjct: 423 QPTNENVARRAGITIEKLAKLKAKTRKSRSLQDRVWPDDGVTFQEITEDPNIEPPDLVVD 482
Query: 491 KELMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFY 550
+ +MR+ V + L L +E+ II RFG DGE K+L +G+++GLSKER+RQL+NRA
Sbjct: 483 RMMMRQQVRDFLGILSTREKEIIEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALD 542
Query: 551 KLKKCLASQGLDAYADLLV 569
KLK+ +++QG D Y DLL
Sbjct: 543 KLKRSVSNQGFDVYLDLLT 561
>B4FJ30_MAIZE (tr|B4FJ30) SIGMA70-like transcription factor OS=Zea mays PE=2 SV=1
Length = 541
Score = 318 bits (814), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 164/367 (44%), Positives = 236/367 (64%), Gaps = 9/367 (2%)
Query: 205 VRSTRLLEXXXXXXXXXXXXXXDNDTYLARKDDPQERIRVKRKINEAFDQNDPQRLFLRS 264
+RSTRLLE DN + + + K K D ++P RLFLR
Sbjct: 182 IRSTRLLERRSKKRNGGHRAL-DNGVACSGVNSKR-----KDKFGRVLDPDEPFRLFLRD 235
Query: 265 -PGKKLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGLKCRALQMKL 323
+ L +EE Q+ QIQ+L+KLE + +LQ+Q GREPT+ EWA+ G+ CR LQ +
Sbjct: 236 RETTEFLTAKEEKQMFSQIQNLMKLEGAQRNLQAQCGREPTVEEWAQAVGMSCRELQSCV 295
Query: 324 RCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFKPQVGCRFGS 383
R G R REK+ ++N R+V+HVA+ Y+G GL +QDL+Q+G GL+K+ +KF P GCRF +
Sbjct: 296 RTGRRCREKMARSNFRLVIHVARKYEGCGLDIQDLVQDGCCGLMKTFEKFNPSKGCRFPT 355
Query: 384 YAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTKEDLARRVGI 443
YAYWWI+Q+I+K+IF +SR IRLPE VY L K+ +A+ I +G +PT E +ARR GI
Sbjct: 356 YAYWWIRQSIKKSIFKNSRLIRLPESVYALLRKVGKARMECIMDGE-QPTNEVVARRAGI 414
Query: 444 SEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELMRRHVLNLLS 503
+ +K++ L R SMQ VW+D T+QEIT D +IE P+ SV + +MR+ V + L+
Sbjct: 415 TIEKLAKLRAKTRKVRSMQDRVWSDDGVTYQEITEDPNIEGPEVSVDRLMMRQQVRSFLT 474
Query: 504 -TLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLKKCLASQGLD 562
L P+E+ II RFG DG+ K+L +G+++GLSKER+RQ++N+A KL+ +++QG
Sbjct: 475 GILSPREKEIIEHRFGIHDGQPKTLHVIGDMYGLSKERIRQVQNKALDKLRNSISAQGFH 534
Query: 563 AYADLLV 569
Y DLL
Sbjct: 535 VYFDLLT 541
>B8BC85_ORYSI (tr|B8BC85) Putative uncharacterized protein OS=Oryza sativa subsp.
indica GN=OsI_28384 PE=4 SV=1
Length = 537
Score = 316 bits (810), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 168/382 (43%), Positives = 234/382 (61%), Gaps = 22/382 (5%)
Query: 205 VRSTRLLEXXXXXXXXXXXXXXDNDTYLARKDDPQERIRVKRKINEAFDQNDPQRLFLRS 264
VRSTRLLE D ++ D ++ +K + ++P +LFLR
Sbjct: 161 VRSTRLLERRSKRRYAPRASIAD----VSCSADNSKKKEKSKKYGRVLEPDEPFKLFLRD 216
Query: 265 -PGKKLLPIEEESQLIVQIQD----------------LLKLEELKTSLQSQFGREPTMAE 307
+ L +EE L +IQ L+K+EE L+ Q GREPT+AE
Sbjct: 217 RETTEFLTAKEERHLFSKIQAKPYFYPVIFIFRTAQILMKIEEAHRKLEVQCGREPTLAE 276
Query: 308 WAEGAGLKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLL 367
WAE G+ + LQ +R G R REK+ ++N R+V+HVA+ Y+G GL +QDL+Q+G GL+
Sbjct: 277 WAEAVGMSSKELQSSIRTGRRCREKMARSNFRLVIHVARKYEGYGLDIQDLVQDGCSGLM 336
Query: 368 KSVKKFKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQE 427
K+ +KF P GCRF +YAYWWI+Q+I+K+IF +SR IRLPE VY L K+ +A+ I E
Sbjct: 337 KTFEKFNPSKGCRFPTYAYWWIRQSIKKSIFKNSRLIRLPESVYALLRKVGKARMECIME 396
Query: 428 GNLRPTKEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDS 487
G +PT ++ARR GI+ +K++ L R P SMQ VW+D+ TFQEIT D ++E PD
Sbjct: 397 GE-QPTNANVARRAGITIEKLAKLRAKTRKPRSMQDHVWSDEGVTFQEITEDPNVEPPDL 455
Query: 488 SVSKELMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENR 547
SV + +MR+ V + L L P+E+ II RFG DGE K+L +G++FGLSKER+RQL+NR
Sbjct: 456 SVDRMMMRQQVRDFLGILSPREKEIIEHRFGIHDGEPKTLHVIGDMFGLSKERIRQLQNR 515
Query: 548 AFYKLKKCLASQGLDAYADLLV 569
A KLK+ + QG D Y DLL
Sbjct: 516 ALEKLKRSASLQGFDVYFDLLT 537
>A3BR19_ORYSJ (tr|A3BR19) Putative uncharacterized protein OS=Oryza sativa subsp.
japonica GN=OsJ_26557 PE=4 SV=1
Length = 497
Score = 315 bits (808), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 168/382 (43%), Positives = 234/382 (61%), Gaps = 22/382 (5%)
Query: 205 VRSTRLLEXXXXXXXXXXXXXXDNDTYLARKDDPQERIRVKRKINEAFDQNDPQRLFLRS 264
VRSTRLLE D ++ D ++ +K + ++P +LFLR
Sbjct: 121 VRSTRLLERRSKRRYAPRASIAD----VSCSADNSKKKEKSKKYGRVLEPDEPFKLFLRD 176
Query: 265 -PGKKLLPIEEESQLIVQIQD----------------LLKLEELKTSLQSQFGREPTMAE 307
+ L +EE L +IQ L+K+EE L+ Q GREPT+AE
Sbjct: 177 RETTEFLTAKEERHLFSKIQAKPYFYPVIFIFRTAQILMKIEEAHRKLEVQCGREPTLAE 236
Query: 308 WAEGAGLKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLL 367
WAE G+ + LQ +R G R REK+ ++N R+V+HVA+ Y+G GL +QDL+Q+G GL+
Sbjct: 237 WAEAVGMSSKELQSSIRTGRRCREKMARSNFRLVIHVARKYEGYGLDIQDLVQDGCSGLM 296
Query: 368 KSVKKFKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQE 427
K+ +KF P GCRF +YAYWWI+Q+I+K+IF +SR IRLPE VY L K+ +A+ I E
Sbjct: 297 KTFEKFNPSKGCRFPTYAYWWIRQSIKKSIFKNSRLIRLPESVYALLRKVGKARMECIME 356
Query: 428 GNLRPTKEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDS 487
G +PT ++ARR GI+ +K++ L R P SMQ VW+D+ TFQEIT D ++E PD
Sbjct: 357 GE-QPTNANVARRAGITIEKLAKLRAKTRKPRSMQDHVWSDEGVTFQEITEDPNVEPPDL 415
Query: 488 SVSKELMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENR 547
SV + +MR+ V + L L P+E+ II RFG DGE K+L +G++FGLSKER+RQL+NR
Sbjct: 416 SVDRMMMRQQVRDFLGILSPREKEIIEHRFGIHDGEPKTLHVIGDMFGLSKERIRQLQNR 475
Query: 548 AFYKLKKCLASQGLDAYADLLV 569
A KLK+ + QG D Y DLL
Sbjct: 476 ALEKLKRSASLQGFDVYFDLLT 497
>Q9ZPL0_MAIZE (tr|Q9ZPL0) Sigma factor SIG6 OS=Zea mays GN=sig6 PE=2 SV=1
Length = 541
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 163/367 (44%), Positives = 233/367 (63%), Gaps = 9/367 (2%)
Query: 205 VRSTRLLEXXXXXXXXXXXXXXDNDTYLARKDDPQERIRVKRKINEAFDQNDPQRLFLRS 264
+RSTRLLE DN + + + K K Q RLFLR
Sbjct: 182 IRSTRLLERRSKKRNGGHRAL-DNGVACSGVNSKR-----KDKFGRVLIQTSLFRLFLRD 235
Query: 265 -PGKKLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGLKCRALQMKL 323
+ L +EE Q+ QIQ+L+KLE + +LQ+Q GREPT+ EWA+ G+ CR LQ +
Sbjct: 236 RETTEFLTAKEEKQMFSQIQNLMKLEGAQRNLQAQCGREPTVEEWAQAVGMSCRELQSCV 295
Query: 324 RCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFKPQVGCRFGS 383
R G R REK+ ++N R+V+HVA+ Y+G GL +QDL+Q+G GL+K+ +KF P GCRF +
Sbjct: 296 RTGRRCREKMARSNFRLVIHVARKYEGCGLDIQDLVQDGCCGLMKTFEKFNPSKGCRFPT 355
Query: 384 YAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTKEDLARRVGI 443
YAYWWI+Q+I+K+IF +SR IRLPE VY L K+ +A+ I +G +PT E +ARR GI
Sbjct: 356 YAYWWIRQSIKKSIFKNSRLIRLPESVYALLRKVGKARMECIMDGE-QPTNEVVARRAGI 414
Query: 444 SEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELMRRHVLNLLS 503
+ +K++ L R SMQ VW+D T+QEIT D +IE P+ SV + +MR+ V + L+
Sbjct: 415 TIEKLAKLRAKTRKVRSMQDRVWSDDGVTYQEITEDPNIEGPEVSVDRLMMRQQVRSFLT 474
Query: 504 -TLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLKKCLASQGLD 562
L P+E+ II RFG DG+ K+L +G+++GLSKER+RQ++N+A KL+ +++QG
Sbjct: 475 GILSPREKEIIEHRFGIHDGQPKTLHVIGDMYGLSKERIRQVQNKALDKLRNSISAQGFH 534
Query: 563 AYADLLV 569
Y DLL
Sbjct: 535 VYFDLLT 541
>M1BY23_SOLTU (tr|M1BY23) Uncharacterized protein OS=Solanum tuberosum
GN=PGSC0003DMG400021553 PE=4 SV=1
Length = 385
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 164/326 (50%), Positives = 213/326 (65%), Gaps = 8/326 (2%)
Query: 150 NDVPCNAISLSRQALSPSKHEASVXXXXXXXXXXXXXXXXXXXXXXXPSRRSNKTVRSTR 209
N P + ++L+R+AL S+ EA++ + +TVRSTR
Sbjct: 2 NFEPHSVVALARKALLASR-EAALLAEDSKLLDDSNFPNFLSTNLVDDKLKEQRTVRSTR 60
Query: 210 LLEXXXXXXXXXXXXXXDNDTYLARKDDPQERIRVKRKINEAFDQNDPQRLFLRSP-GKK 268
E +T + + D V+RK+NE+ D NDP R+FL P K+
Sbjct: 61 FTERQSRKRGAPKPTQQVQETNRSGRPD------VRRKVNESIDLNDPLRMFLWGPETKQ 114
Query: 269 LLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGLKCRALQMKLRCGNR 328
LL +EES+LIV+IQ +KL+E+K LQ QF EPT EWAE AG+ R L+ +L G
Sbjct: 115 LLTAKEESELIVKIQISMKLQEVKHQLQIQFAHEPTSVEWAEAAGITSRELKSQLLSGKS 174
Query: 329 SREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFKPQVGCRFGSYAYWW 388
SREKLI ANLRMV+H+AK YQGRGL+LQDLLQEGSMGL+KSV+KFKPQ GCRF +YAYWW
Sbjct: 175 SREKLINANLRMVVHIAKQYQGRGLNLQDLLQEGSMGLMKSVEKFKPQAGCRFPTYAYWW 234
Query: 389 IKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTKEDLARRVGISEDKI 448
I+Q++RKAIF HSRTIRLPE VY L K+ +AKK IQ+GN PTKED+A G+S +++
Sbjct: 235 IRQSVRKAIFQHSRTIRLPENVYALLSKVKDAKKECIQQGNRYPTKEDIASCAGMSVERL 294
Query: 449 SSLLYVARIPMSMQQTVWTDQNTTFQ 474
+LL R P+SMQQ+VW+DQ+TTFQ
Sbjct: 295 QNLLSNVRTPLSMQQSVWSDQDTTFQ 320
>M8BZZ6_AEGTA (tr|M8BZZ6) RNA polymerase sigma factor rpoD OS=Aegilops tauschii
GN=F775_07378 PE=4 SV=1
Length = 551
Score = 305 bits (782), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 142/287 (49%), Positives = 202/287 (70%), Gaps = 1/287 (0%)
Query: 283 QDLLKLEELKTSLQSQFGREPTMAEWAEGAGLKCRALQMKLRCGNRSREKLIKANLRMVL 342
++L+KLEE + L++Q GREPT+ EWA+ G+ C+ LQ + G R REK+ ++N R+V+
Sbjct: 263 RNLMKLEEAQRRLEAQCGREPTLPEWAQAVGMSCKELQSSIHMGRRCREKMARSNFRLVI 322
Query: 343 HVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFKPQVGCRFGSYAYWWIKQAIRKAIFHHSR 402
HVA+ YQG GL ++DL+Q+G GL+K+ +KF P GCRF +YAYWWI+QAI+K+IF HSR
Sbjct: 323 HVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWIRQAIKKSIFKHSR 382
Query: 403 TIRLPEKVYTQLGKILEAKKLYIQEGNLRPTKEDLARRVGISEDKISSLLYVARIPMSMQ 462
IRLPE VY +L K+ +A+ I EG +PT +++ARR GI+ +K++ L R P SMQ
Sbjct: 383 LIRLPESVYARLKKVGKARLECILEGE-QPTNQNVARRAGITIEKLAKLKAKTRKPRSMQ 441
Query: 463 QTVWTDQNTTFQEITADTSIESPDSSVSKELMRRHVLNLLSTLRPKERRIIRLRFGFEDG 522
VW++ TFQEIT D +I+ PD V + +MR+ V L L +E+ II RFG DG
Sbjct: 442 DQVWSNDAVTFQEITEDPNIDPPDLVVDRIMMRQQVREFLGILTTREKEIIEHRFGIYDG 501
Query: 523 EQKSLSEVGEIFGLSKERVRQLENRAFYKLKKCLASQGLDAYADLLV 569
E K+L +G+++GLSKER+RQL+NRA KLK+ +++QG Y DLL
Sbjct: 502 EPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFHVYLDLLT 548
>Q9AYR7_9BRYO (tr|Q9AYR7) PpSIG2 OS=Physcomitrella patens GN=Sig2 PE=2 SV=1
Length = 579
Score = 294 bits (752), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 136/318 (42%), Positives = 220/318 (69%), Gaps = 1/318 (0%)
Query: 251 AFDQNDPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWA 309
A D +DP R +LR G+ KLL EE L QIQDLLKLE +K++L+ + GR T+ EW+
Sbjct: 257 AADPSDPVRAYLRDIGRTKLLTAREEVDLSHQIQDLLKLENIKSNLEREIGRNATIGEWS 316
Query: 310 EGAGLKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKS 369
G++ A + +L+ G +++K++ +NLR+V+ +AK YQGRG++LQDL+QEGSMGL++
Sbjct: 317 RAVGMEQNAFEARLKKGRFAKDKMVNSNLRLVVSIAKNYQGRGMTLQDLIQEGSMGLVRG 376
Query: 370 VKKFKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGN 429
+KF P G +F +YA+WWI+QA+ ++I SRTIRLP +Y + +I +AK++ +QE
Sbjct: 377 AEKFDPTKGFKFSTYAHWWIRQAVTRSIADQSRTIRLPIHLYEVISRINKAKRMLVQEHG 436
Query: 430 LRPTKEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSV 489
E++A VG++ +K+ S++ A+ P SM++ + D +TT E+ ADT ++SP+ ++
Sbjct: 437 REARNEEVAELVGLTVEKLKSVVKSAKAPGSMERPIGKDGDTTLGELVADTDVDSPEDAI 496
Query: 490 SKELMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAF 549
K+LMR+ + +L TL P+ER ++RLRFG +DG K+L E+G+IF +++ER+RQ+E +A
Sbjct: 497 VKQLMRQDIEGVLRTLNPREREVLRLRFGLDDGRSKTLEEIGQIFKVTRERIRQIEAKAM 556
Query: 550 YKLKKCLASQGLDAYADL 567
KL++ + L Y D+
Sbjct: 557 RKLRQPSRNSILREYLDV 574
>E1C9M6_PHYPA (tr|E1C9M6) Plastid sigma facor SIG2 OS=Physcomitrella patens
subsp. patens GN=PpSig2 PE=4 SV=1
Length = 579
Score = 294 bits (752), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 136/318 (42%), Positives = 220/318 (69%), Gaps = 1/318 (0%)
Query: 251 AFDQNDPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWA 309
A D +DP R +LR G+ KLL EE L QIQDLLKLE +K++L+ + GR T+ EW+
Sbjct: 257 AADPSDPVRAYLRDIGRTKLLTAREEVDLSHQIQDLLKLENIKSNLEREIGRNATIGEWS 316
Query: 310 EGAGLKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKS 369
G++ A + +L+ G +++K++ +NLR+V+ +AK YQGRG++LQDL+QEGSMGL++
Sbjct: 317 RAVGMEQNAFEARLKKGRFAKDKMVNSNLRLVVSIAKNYQGRGMTLQDLIQEGSMGLVRG 376
Query: 370 VKKFKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGN 429
+KF P G +F +YA+WWI+QA+ ++I SRTIRLP +Y + +I +AK++ +QE
Sbjct: 377 AEKFDPTKGFKFSTYAHWWIRQAVTRSIADQSRTIRLPIHLYEVISRINKAKRMLVQEHG 436
Query: 430 LRPTKEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSV 489
E++A VG++ +K+ S++ A+ P SM++ + D +TT E+ ADT ++SP+ ++
Sbjct: 437 REARNEEVAELVGLTVEKLKSVVKSAKAPGSMERPIGKDGDTTLGELVADTDVDSPEDAI 496
Query: 490 SKELMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAF 549
K+LMR+ + +L TL P+ER ++RLRFG +DG K+L E+G+IF +++ER+RQ+E +A
Sbjct: 497 VKQLMRQDIEGVLRTLNPREREVLRLRFGLDDGRSKTLEEIGQIFKVTRERIRQIEAKAM 556
Query: 550 YKLKKCLASQGLDAYADL 567
KL++ + L Y D+
Sbjct: 557 RKLRQPSRNSILREYLDV 574
>K0ISZ8_MARPO (tr|K0ISZ8) Plastid RNA polymerase sigma factor 2 OS=Marchantia
polymorpha GN=Mpsig2 PE=2 SV=1
Length = 615
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 136/323 (42%), Positives = 214/323 (66%), Gaps = 1/323 (0%)
Query: 246 RKINEAFDQNDPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPT 304
+K A+D DP R +LR GK KLL EE +L IQDLL++E +K L+ Q GREPT
Sbjct: 293 KKSQPAYDPQDPVRAYLRDIGKTKLLTSSEEIELAEGIQDLLRVESVKNDLREQMGREPT 352
Query: 305 MAEWAEGAGLKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSM 364
+ EWA+ G + +L+ +++ G +++++ +NLR+V+ +AK YQGRG+++QDL+QEGSM
Sbjct: 353 LMEWAKAVGTERHSLESRIKSGQACKDRMVNSNLRLVVSIAKRYQGRGMTIQDLIQEGSM 412
Query: 365 GLLKSVKKFKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLY 424
GL++ +KF G +F +YA+WWI+QAI +AI SRTIRLP VY L +I +AK +
Sbjct: 413 GLIRGAEKFDHTRGFKFSTYAHWWIRQAITRAIADQSRTIRLPVHVYELLSRITKAKSML 472
Query: 425 IQEGNLRPTKEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIES 484
E P E++A VG+S +K+ ++ AR P SM+ V + +TT E+ D I+S
Sbjct: 473 AAEHGRAPRDEEVAELVGLSIEKLKMVIKSARSPKSMEFPVGKNNDTTLGEVIPDKDIDS 532
Query: 485 PDSSVSKELMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQL 544
P+ ++SK L+++ + +L TL P+ER ++RLR+G +DG ++L E+G +F +++ER+RQ+
Sbjct: 533 PEEAISKRLLKQDLDVVLHTLSPRERDVLRLRYGLDDGRMRTLEEIGNVFKVTRERIRQI 592
Query: 545 ENRAFYKLKKCLASQGLDAYADL 567
E +A KL++ + L Y DL
Sbjct: 593 EAKALRKLRQPSRNTALREYLDL 615
>B8LLW6_PICSI (tr|B8LLW6) Putative uncharacterized protein OS=Picea sitchensis
PE=2 SV=1
Length = 592
Score = 274 bits (700), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 141/323 (43%), Positives = 207/323 (64%)
Query: 245 KRKINEAFDQNDPQRLFLRSPGKKLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPT 304
K+ I+ +D RL +LL EE +L IQDL+KL+ ++ + + G+EPT
Sbjct: 270 KKAISSKGHISDSIRLLRDWSSSRLLTASEEVELSRGIQDLIKLDRIRAKYKEKTGKEPT 329
Query: 305 MAEWAEGAGLKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSM 364
+A+WAE G+ + L+M+L G S +K+I NLR+V+ VAK YQ RGLSLQDL+Q GSM
Sbjct: 330 LAQWAEVIGVDQKTLKMRLEVGRDSFDKIINCNLRLVISVAKNYQNRGLSLQDLIQAGSM 389
Query: 365 GLLKSVKKFKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLY 424
GL++S +KF G +F +YAYWWI+Q+I KA+ SRTIRLP + + +I A +L
Sbjct: 390 GLMRSAEKFDYSRGFKFSTYAYWWIRQSITKALTEQSRTIRLPVHIVESMTRIRTAWRLL 449
Query: 425 IQEGNLRPTKEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIES 484
QE PTKE++A GIS ++ + +R+P S+ + V D + F EI ADT+ ES
Sbjct: 450 YQEHKRDPTKEEVAEVAGISMTRLRHVTRCSRVPTSLDRCVGKDMDEKFSEIVADTNSES 509
Query: 485 PDSSVSKELMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQL 544
++ VSKEL ++ + +L TL +E++++RLR+G +DG KSL EVGE F LS+ERVRQ+
Sbjct: 510 TETIVSKELFKKDLDRVLDTLTAREKQVVRLRYGLDDGRMKSLHEVGENFSLSRERVRQI 569
Query: 545 ENRAFYKLKKCLASQGLDAYADL 567
E +A KL++ +Q L Y D+
Sbjct: 570 EMKAMRKLRQNHRTQHLKHYLDI 592
>B8LQB0_PICSI (tr|B8LQB0) Putative uncharacterized protein OS=Picea sitchensis
PE=2 SV=1
Length = 495
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 141/323 (43%), Positives = 207/323 (64%)
Query: 245 KRKINEAFDQNDPQRLFLRSPGKKLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPT 304
K+ I+ +D RL +LL EE +L IQDL+KL+ ++ + + G+EPT
Sbjct: 173 KKAISSKGHISDSIRLLRDWSSSRLLTASEEVELSRGIQDLIKLDRIRAKYKEKTGKEPT 232
Query: 305 MAEWAEGAGLKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSM 364
+A+WAE G+ + L+M+L G S +K+I NLR+V+ VAK YQ RGLSLQDL+Q GSM
Sbjct: 233 LAQWAEVIGVDQKTLKMRLEVGRDSFDKIINCNLRLVISVAKNYQNRGLSLQDLIQAGSM 292
Query: 365 GLLKSVKKFKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLY 424
GL++S +KF G +F +YAYWWI+Q+I KA+ SRTIRLP + + +I A +L
Sbjct: 293 GLMRSAEKFDYSRGFKFSTYAYWWIRQSITKALTEQSRTIRLPVHIVESMTRIRTAWRLL 352
Query: 425 IQEGNLRPTKEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIES 484
QE PTKE++A GIS ++ + +R+P S+ + V D + F EI ADT+ ES
Sbjct: 353 YQEHKRDPTKEEVAEVAGISMTRLRHVTRCSRVPTSLDRCVGKDMDEKFSEIVADTNSES 412
Query: 485 PDSSVSKELMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQL 544
++ VSKEL ++ + +L TL +E++++RLR+G +DG KSL EVGE F LS+ERVRQ+
Sbjct: 413 TETIVSKELFKKDLDRVLDTLTAREKQVVRLRYGLDDGRMKSLHEVGENFSLSRERVRQI 472
Query: 545 ENRAFYKLKKCLASQGLDAYADL 567
E +A KL++ +Q L Y D+
Sbjct: 473 EMKAMRKLRQNHRTQHLKHYLDI 495
>A9RTR4_PHYPA (tr|A9RTR4) Uncharacterized protein OS=Physcomitrella patens subsp.
patens GN=PHYPADRAFT_160930 PE=4 SV=1
Length = 591
Score = 271 bits (693), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 128/316 (40%), Positives = 214/316 (67%), Gaps = 3/316 (0%)
Query: 255 NDPQRLFLRSPGK-KLLPIEEESQLIVQIQ--DLLKLEELKTSLQSQFGREPTMAEWAEG 311
DP R +LR GK KLL EE L +IQ DLL LE++K+ LQ + GREP++ EW+
Sbjct: 273 TDPVRAYLRDIGKTKLLTASEEVALSRKIQARDLLVLEKVKSDLQREIGREPSIGEWSRA 332
Query: 312 AGLKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVK 371
G++ A +++++ G S++K++ +NLR+V+ + K YQGRG++L DL+QEGSMGL++ +
Sbjct: 333 VGMEQNAFELRVKEGRYSKDKMVNSNLRLVVSIVKNYQGRGMTLPDLIQEGSMGLIRGAE 392
Query: 372 KFKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLR 431
KF P G +F +YA+WWI+QA+ +AI SR IRLP +Y + +I +AKK+ IQE +
Sbjct: 393 KFDPDKGFKFSTYAHWWIRQAVTRAIADQSRIIRLPIHLYEVISRINKAKKMLIQEHGRQ 452
Query: 432 PTKEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSK 491
P E++A VG+S +K+ ++ A+ P SM + + +++ + E+ AD +ESP+ + +
Sbjct: 453 PRDEEVAELVGMSVEKLKFIVKSAKTPSSMDRLIGKEKDQSIGEMIADKDVESPEDDLIR 512
Query: 492 ELMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYK 551
+++++ V +L TL P+ER ++RLRFG +DG+ ++L E+G +F +++ER+RQ+E +A K
Sbjct: 513 QVLKQDVDGVLCTLNPREREVLRLRFGLDDGQSRTLEEIGTLFKVTRERIRQIEAKAMRK 572
Query: 552 LKKCLASQGLDAYADL 567
L++ + L Y D+
Sbjct: 573 LRQPSRNGVLREYLDV 588
>D7KIT0_ARALL (tr|D7KIT0) Putative uncharacterized protein OS=Arabidopsis lyrata
subsp. lyrata GN=ARALYDRAFT_470915 PE=4 SV=1
Length = 572
Score = 259 bits (661), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 132/323 (40%), Positives = 202/323 (62%), Gaps = 1/323 (0%)
Query: 243 RVKRKINEAFDQNDPQR-LFLRSPGKKLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGR 301
R KR + + D NDP R L + + KLL + EE +L IQDLLKLE L+T L + GR
Sbjct: 245 RKKRLVAQEVDHNDPLRYLRMTTSSSKLLTVREEHELSAGIQDLLKLERLQTELTERCGR 304
Query: 302 EPTMAEWAEGAGLKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQE 361
+PT A+WA AG+ ++L+ ++ G ++K+IK+N+R+V+ +AK YQG G++LQDL+QE
Sbjct: 305 QPTFAQWASAAGVDQKSLRKRIHHGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQE 364
Query: 362 GSMGLLKSVKKFKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAK 421
G GL++ +KF G +F +YA+WWIKQA+RK++ SR IRLP + ++ EA+
Sbjct: 365 GCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEAR 424
Query: 422 KLYIQEGNLRPTKEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTS 481
K E P E++A G+S ++ ++L + P S+ Q + +QN E+ AD
Sbjct: 425 KQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPE 484
Query: 482 IESPDSSVSKELMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERV 541
+ + + KE MR+ + +L +L +E+++IR RFG EDG K+L E+GE+ G+S+ERV
Sbjct: 485 AVTSEDILIKEFMRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERV 544
Query: 542 RQLENRAFYKLKKCLASQGLDAY 564
RQ+E+ AF KLK S L Y
Sbjct: 545 RQIESSAFRKLKNKKRSNHLQQY 567
>R0IC61_9BRAS (tr|R0IC61) Uncharacterized protein OS=Capsella rubella
GN=CARUB_v10008711mg PE=4 SV=1
Length = 571
Score = 258 bits (659), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 132/324 (40%), Positives = 206/324 (63%), Gaps = 3/324 (0%)
Query: 243 RVKRKINEAFDQNDPQR-LFLRSPGKKLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGR 301
R KR + + D NDP R L + + KLL + EE +L IQDLLKLE L+ L + GR
Sbjct: 244 RKKRVVAQEVDHNDPLRYLRVTTSSSKLLTVREEHELSAGIQDLLKLERLQAELTERCGR 303
Query: 302 EPTMAEWAEGAGLKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQE 361
+PT ++WA AG+ ++L+ ++ G + ++K+IK+N+R+V+ +AK YQG G++LQDL+QE
Sbjct: 304 QPTFSQWASAAGVDQKSLRKRINYGTQCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQE 363
Query: 362 GSMGLLKSVKKFKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAK 421
G GL++ +KF G +F +YA+WWIKQA+RK++ SR IRLP + ++ EA+
Sbjct: 364 GCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEAR 423
Query: 422 K-LYIQEGNLRPTKEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADT 480
K LY ++G P E++A G+S ++ ++L + P S+ Q + +QN E+ AD
Sbjct: 424 KQLYTEKGR-HPENEEVAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADP 482
Query: 481 SIESPDSSVSKELMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKER 540
E+ + + K+ MR + +L +L +E+++IR RFG EDG K+L E+GE+ G+S+ER
Sbjct: 483 EAETSEDILIKQFMREDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGELMGVSRER 542
Query: 541 VRQLENRAFYKLKKCLASQGLDAY 564
VRQ+E+ AF KLK S L Y
Sbjct: 543 VRQIESSAFRKLKNKKRSNHLQQY 566
>Q710C3_SPIOL (tr|Q710C3) Sigma factor OS=Spinacia oleracea GN=sig2 PE=2 SV=2
Length = 575
Score = 254 bits (650), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 128/324 (39%), Positives = 204/324 (62%), Gaps = 3/324 (0%)
Query: 243 RVKRKINEAFDQNDPQRLFLRSP--GKKLLPIEEESQLIVQIQDLLKLEELKTSLQSQFG 300
R KR + D +DP R +LR +LL EE++L IQDLLKLE+L L+ +FG
Sbjct: 250 RKKRTSVQEVDYSDPLR-YLRGATNSSRLLTSSEETELSAGIQDLLKLEKLHDELKVRFG 308
Query: 301 REPTMAEWAEGAGLKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQ 360
+ P+ +WA AG+ R L+ +L G ++K+IK+N+R+V+ +AK YQG G++LQDL+Q
Sbjct: 309 KSPSFVQWAAAAGIDQRTLRRRLNHGTFCKDKMIKSNVRLVISIAKNYQGSGMNLQDLVQ 368
Query: 361 EGSMGLLKSVKKFKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEA 420
EG GL++ +KF G +F +YA+WWIKQA+RK++ SRTIRLP + ++ EA
Sbjct: 369 EGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEA 428
Query: 421 KKLYIQEGNLRPTKEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADT 480
+K + E +P E++A G+S +++++L + P S+ Q + + N E+ AD
Sbjct: 429 RKQLLSENGKQPNNEEVAEATGLSMKRLTAVLMTPKAPRSLDQKIGFNMNLKPSEVIADP 488
Query: 481 SIESPDSSVSKELMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKER 540
E+ + ++K+ MR+ + +L TL +E+++IR RFG EDG K+L E+GE+ G+S+ER
Sbjct: 489 EAETAEDLLTKQFMRQDLEKVLDTLSSREKQVIRWRFGLEDGRMKTLQEIGELMGVSRER 548
Query: 541 VRQLENRAFYKLKKCLASQGLDAY 564
+RQ+E+ AF KL+ + L Y
Sbjct: 549 IRQIESSAFRKLQNKKKTINLQQY 572
>K7KHD7_SOYBN (tr|K7KHD7) Uncharacterized protein OS=Glycine max PE=4 SV=1
Length = 564
Score = 254 bits (648), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 129/329 (39%), Positives = 206/329 (62%), Gaps = 3/329 (0%)
Query: 238 PQERIRVKRKINEAFDQNDPQRLFLRS--PGKKLLPIEEESQLIVQIQDLLKLEELKTSL 295
P R KR + D +DP R +LR+ +LL EE +L IQDLLKLE+++ L
Sbjct: 234 PGSSSRRKRVSMQEVDYSDPLR-YLRTTTSASRLLTPTEEIKLSAGIQDLLKLEKIQEDL 292
Query: 296 QSQFGREPTMAEWAEGAGLKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSL 355
+FG +PT A+WA AG+ + L+ +L G ++K+IK+N+R+V+ +AK YQG G++L
Sbjct: 293 AERFGSQPTFAQWAAVAGVDQKTLRKRLNYGIFCKDKMIKSNIRLVISIAKNYQGSGMNL 352
Query: 356 QDLLQEGSMGLLKSVKKFKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLG 415
QDL+QEG GL+K +KF G +F +YA+WWIKQA+RK++ SRTIRLP +
Sbjct: 353 QDLVQEGCRGLVKGAEKFDGTKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATY 412
Query: 416 KILEAKKLYIQEGNLRPTKEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQE 475
++ EA+K E +P E++A G+S +++++L + P S++Q + +QN E
Sbjct: 413 RVKEARKQLYSENGRQPDDEEVAEATGLSMKRLNAVLMTPKAPRSLEQKIGINQNLKPSE 472
Query: 476 ITADTSIESPDSSVSKELMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFG 535
+ +D E+ + + K+ M++ + L +L P+ER+++R RFG +DG K+L E+GE+ G
Sbjct: 473 VISDPDAETAEEQLLKQFMKKDLEEALDSLNPRERQVVRWRFGMDDGRTKTLQEIGEMLG 532
Query: 536 LSKERVRQLENRAFYKLKKCLASQGLDAY 564
+S+ER+RQ+E+ AF KLK + L Y
Sbjct: 533 VSRERIRQIESSAFKKLKNKKRTNHLQQY 561
>D7UB90_VITVI (tr|D7UB90) Putative uncharacterized protein OS=Vitis vinifera
GN=VIT_15s0024g00640 PE=4 SV=1
Length = 575
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 129/324 (39%), Positives = 206/324 (63%), Gaps = 3/324 (0%)
Query: 243 RVKRKINEAFDQNDPQRLFLR--SPGKKLLPIEEESQLIVQIQDLLKLEELKTSLQSQFG 300
R KR + D +DP R +LR + +LL EE +L IQDLLKLE+L+ L+ +FG
Sbjct: 250 RRKRVSLQEVDYSDPLR-YLRGTTSTSRLLTATEELELSEGIQDLLKLEKLQEDLEERFG 308
Query: 301 REPTMAEWAEGAGLKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQ 360
+PT A+WA AG+ + L+ + G R ++K+IK+N+R+V+ +AK YQG G+++QDL+Q
Sbjct: 309 VKPTFAQWAAAAGVDQKTLRRRTNYGIRCKDKMIKSNIRLVISIAKNYQGAGMNIQDLVQ 368
Query: 361 EGSMGLLKSVKKFKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEA 420
EG GL++ +KF G +F +YA+WWIKQA+RK++ SRTIRLP + ++ EA
Sbjct: 369 EGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEA 428
Query: 421 KKLYIQEGNLRPTKEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADT 480
+K E P E++A G+S +++++L + P S+ Q + +QN E+ AD
Sbjct: 429 RKQLYSENGRHPNNEEVAEATGLSMKRLNAVLLTPKAPRSLDQKIGINQNLKPSEVIADP 488
Query: 481 SIESPDSSVSKELMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKER 540
E+ + + K+ MR + +L++L P+E+++IR R+G EDG K+L E+GE+ G+S+ER
Sbjct: 489 DAETAEELLIKQFMREDLEKVLNSLNPREKQVIRWRYGLEDGRTKTLQEIGELMGVSRER 548
Query: 541 VRQLENRAFYKLKKCLASQGLDAY 564
+RQ+E+ AF KLK ++ L Y
Sbjct: 549 IRQIESCAFRKLKNKRRTKHLQQY 572
>B9SDA3_RICCO (tr|B9SDA3) RNA polymerase sigma factor rpoD1, putative OS=Ricinus
communis GN=RCOM_1515490 PE=4 SV=1
Length = 569
Score = 252 bits (643), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 129/329 (39%), Positives = 204/329 (62%), Gaps = 3/329 (0%)
Query: 238 PQERIRVKRKINEAFDQNDPQRLFLR--SPGKKLLPIEEESQLIVQIQDLLKLEELKTSL 295
P + KR + D +DP R +LR + +LL EE +L IQDLLKLE L+ L
Sbjct: 239 PGSTSKKKRGSLQEVDYSDPLR-YLRGTTSTSRLLTASEELELSAAIQDLLKLERLQEEL 297
Query: 296 QSQFGREPTMAEWAEGAGLKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSL 355
++G +PT A+WA AG+ R L+ ++ G ++K+IK+N+R+V+ +AK YQG G++L
Sbjct: 298 AERYGGQPTFAQWAAAAGVDQRTLRKRINHGTICKDKMIKSNIRLVISIAKNYQGAGMNL 357
Query: 356 QDLLQEGSMGLLKSVKKFKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLG 415
QDL+QEG GL++ +KF G +F +YA+WWIKQA+RK++ SRTIRLP +
Sbjct: 358 QDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATY 417
Query: 416 KILEAKKLYIQEGNLRPTKEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQE 475
++ EA+K E P E++A G+S ++S++L + P S+ Q + + + E
Sbjct: 418 RVKEARKQLYSENGRHPDDEEVAEAAGLSMKRLSAVLLTPKAPRSLDQKIGMNMDLKPSE 477
Query: 476 ITADTSIESPDSSVSKELMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFG 535
+ AD E+ + + K+ M++ + +L+TL P+E +++R RFG EDG K+L E+GEI G
Sbjct: 478 VIADPEAETAEELLMKQFMKQDLEKVLNTLNPRETQVVRWRFGLEDGRMKTLQEIGEIMG 537
Query: 536 LSKERVRQLENRAFYKLKKCLASQGLDAY 564
+S+ER+RQ+E+ AF KLK ++ L Y
Sbjct: 538 VSRERIRQIESSAFRKLKNKKRTKQLKQY 566
>B7KDV7_CYAP7 (tr|B7KDV7) RNA polymerase sigma factor OS=Cyanothece sp. (strain
PCC 7424) GN=PCC7424_1979 PE=3 SV=1
Length = 376
Score = 251 bits (641), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 124/300 (41%), Positives = 205/300 (68%), Gaps = 4/300 (1%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D R++L+ G+ +LL EEE +L +I DLL+LE L+ L+ GR P+ EWAE G+
Sbjct: 66 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERLREKLRRSLGRYPSDKEWAEQVGM 125
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
+ A Q +L G R+++K++++NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF
Sbjct: 126 ELPAFQRRLYLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 185
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
+ G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + K+ QE +PT+
Sbjct: 186 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTE 245
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQE-ITADTSIESPDSSVSKEL 493
E++A R+ ++ +K+ + A++P+S++ + ++++ + I AD E+P+ VSK L
Sbjct: 246 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADG--ETPEDEVSKNL 303
Query: 494 MRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
+R + N+L TL P+ER ++RLR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 304 LREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 363
>E0UHZ3_CYAP2 (tr|E0UHZ3) RNA polymerase sigma factor OS=Cyanothece sp. (strain
PCC 7822) GN=Cyan7822_2551 PE=3 SV=1
Length = 377
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 123/300 (41%), Positives = 205/300 (68%), Gaps = 4/300 (1%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D R++L+ G+ +LL EEE +L +I DLL+LE L+ L+ GR P+ EWA+ G+
Sbjct: 67 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERLREKLRRNLGRYPSDKEWAQQVGM 126
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
+ A Q +L G R+++K++++NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF
Sbjct: 127 ELPAFQRRLYLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 186
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
+ G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + K+ QE +PT+
Sbjct: 187 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTE 246
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQE-ITADTSIESPDSSVSKEL 493
E++A R+ ++ +K+ + A++P+S++ + ++++ + I AD E+P+ VSK L
Sbjct: 247 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADG--ETPEDEVSKNL 304
Query: 494 MRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
+R + N+L TL P+ER ++RLR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 305 LREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 364
>K8GQ72_9CYAN (tr|K8GQ72) RNA polymerase sigma factor OS=Oscillatoriales
cyanobacterium JSC-12 GN=OsccyDRAFT_1085 PE=3 SV=1
Length = 382
Score = 249 bits (635), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 120/299 (40%), Positives = 202/299 (67%), Gaps = 2/299 (0%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D RL+L+ G+ +LL +EE +L +I DLL+LE ++ SLQ Q R P AEWA +
Sbjct: 72 DSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIRESLQQQLDRTPQDAEWANAVNM 131
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
A + +L G R+++K++++NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF
Sbjct: 132 TLPAFRHRLHLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 191
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
+ G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + KL QE +PT+
Sbjct: 192 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTE 251
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELM 494
E++A R+ ++ +K+ + A++P+S++ + ++++ + ++ E+P+ V+K L+
Sbjct: 252 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVAKNLL 310
Query: 495 RRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
R + N+L TL P+ER ++RLR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 311 REDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 369
>K9YFR5_HALP7 (tr|K9YFR5) RNA polymerase sigma factor OS=Halothece sp. (strain
PCC 7418) GN=PCC7418_3695 PE=3 SV=1
Length = 394
Score = 248 bits (634), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 124/301 (41%), Positives = 204/301 (67%), Gaps = 4/301 (1%)
Query: 255 NDPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAG 313
D RL+L+ G+ +LL +EE +L +I DLL+LE +T L++ G EPT EWAE
Sbjct: 82 EDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERKRTELEATIGCEPTDEEWAEEVD 141
Query: 314 LKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKF 373
+ + + +L G R++EK++++NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF
Sbjct: 142 MPLQKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 201
Query: 374 KPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPT 433
+ G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + KL QE +PT
Sbjct: 202 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQELGRKPT 261
Query: 434 KEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQE-ITADTSIESPDSSVSKE 492
+E++A R+ ++ +K+ + A++P+S++ + ++++ + I AD E+P+ VSK
Sbjct: 262 EEEIAERMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADG--ETPEDEVSKS 319
Query: 493 LMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKL 552
L+R + ++L TL P+ER ++RLR+G EDG K+L E+G+IF +++ER+RQ+E +A KL
Sbjct: 320 LLREDLEDVLDTLSPRERDVLRLRYGLEDGRMKTLEEIGQIFNVTRERIRQIEAKALRKL 379
Query: 553 K 553
+
Sbjct: 380 R 380
>A9RTR6_PHYPA (tr|A9RTR6) Uncharacterized protein OS=Physcomitrella patens subsp.
patens GN=PHYPADRAFT_178031 PE=4 SV=1
Length = 583
Score = 248 bits (633), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 117/300 (39%), Positives = 198/300 (66%), Gaps = 1/300 (0%)
Query: 255 NDPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAG 313
+DP R +LR + KLL EE L +IQD+LKLE+++ LQ GREPT++EW++
Sbjct: 268 SDPIRSYLRDIKRTKLLSASEEVALSRKIQDILKLEKIRAELQRDIGREPTLSEWSQAVS 327
Query: 314 LKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKF 373
L +L+++++ G +++KL+ +NLR+V+ + K YQGRG++L DL+QEGS+GL++ +KF
Sbjct: 328 LDQTSLELRVKEGRSAKDKLVNSNLRLVVSIVKNYQGRGMTLPDLIQEGSLGLIRGAEKF 387
Query: 374 KPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPT 433
P++G +F +YA WWI+QA+ +AI SR IRLP +Y + +I +AK QE +P
Sbjct: 388 DPEMGYKFSTYATWWIRQAVTRAIADQSRIIRLPVHIYEVISRINKAKMTISQELGRQPR 447
Query: 434 KEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKEL 493
E++A VG+S +K+ ++ AR P SM + + D + E+ AD + SP+ + ++
Sbjct: 448 DEEVAAMVGMSVEKLLFIVKSARPPTSMDRPIGKDGEQSLGEMVADKGVGSPEDDIMTQV 507
Query: 494 MRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
+++ + ++L +L P ER ++RLRFG + +L ++G IF +++ER+RQ+E +A KL+
Sbjct: 508 LKQDIEDVLRSLNPMEREVLRLRFGLSGAQSMTLKDLGIIFKVTRERIRQIEAKALRKLR 567
>M4DQ26_BRARP (tr|M4DQ26) Uncharacterized protein OS=Brassica rapa subsp.
pekinensis GN=Bra018617 PE=4 SV=1
Length = 573
Score = 248 bits (632), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 124/312 (39%), Positives = 194/312 (62%), Gaps = 1/312 (0%)
Query: 243 RVKRKINEAFDQNDPQR-LFLRSPGKKLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGR 301
R KR ++ D NDP R L + + KLL EE QL IQDLLKLE L+ L + G
Sbjct: 243 RKKRVASQEIDNNDPLRYLRMTTSSSKLLTAREEQQLSEGIQDLLKLERLQAELTERCGH 302
Query: 302 EPTMAEWAEGAGLKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQE 361
+PT+A+WA AG+ + L+ ++ G + ++++IK+N+R+V+ +AK YQG G+ QDL+QE
Sbjct: 303 QPTLAQWASAAGIDKKTLRKRITHGTQCKDRMIKSNIRLVISIAKNYQGAGMDFQDLVQE 362
Query: 362 GSMGLLKSVKKFKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAK 421
G GL++ +KF G +F +YA+WWIKQA+RK++ SR IRLP + ++ EA+
Sbjct: 363 GCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEAR 422
Query: 422 KLYIQEGNLRPTKEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTS 481
K E +P E++A G+S ++ ++L + P S+ Q + + N E+ +D
Sbjct: 423 KQLYSETGKQPKNEEVAEATGLSMKRLMAVLLSPKPPRSLDQKIGINLNLKPSEVISDPE 482
Query: 482 IESPDSSVSKELMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERV 541
E+ + + K+ MR + +L +L +E+++IR RFG EDG K+L E+GE G+S+ERV
Sbjct: 483 AETSEDILMKQFMREDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGETMGVSRERV 542
Query: 542 RQLENRAFYKLK 553
RQ+E+ AF KLK
Sbjct: 543 RQIESSAFRKLK 554
>K9S7N4_9CYAN (tr|K9S7N4) RNA polymerase sigma factor OS=Geitlerinema sp. PCC
7407 GN=GEI7407_1675 PE=3 SV=1
Length = 381
Score = 247 bits (631), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 120/299 (40%), Positives = 203/299 (67%), Gaps = 2/299 (0%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D RL+L+ G+ +LL +EE +L +I DLL+LE ++ L Q REPT AEWA+ +
Sbjct: 71 DSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIRADLAEQLEREPTDAEWAQKVDM 130
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
A + +L G R+++K++++NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF
Sbjct: 131 ALPAFRHRLHLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 190
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
+ G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + KL QE +PT+
Sbjct: 191 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTE 250
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELM 494
E++A R+ ++ +K+ + A++P+S++ + ++++ + ++ E+P+ VSK L+
Sbjct: 251 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKNLL 309
Query: 495 RRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
R + ++L TL P+ER ++RLR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 310 REDLESVLGTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 368
>K9Q1H6_9CYAN (tr|K9Q1H6) RNA polymerase sigma factor OS=Leptolyngbya sp. PCC
7376 GN=Lepto7376_2997 PE=3 SV=1
Length = 379
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 122/300 (40%), Positives = 204/300 (68%), Gaps = 4/300 (1%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D R++L+ G+ +LL EEE +L +I DLL+LE ++ L+ R PT EWAE AG+
Sbjct: 69 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERMREQLEEHESRVPTDKEWAEAAGM 128
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
+ + +L G R+++K++++NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF
Sbjct: 129 PLKDFRRRLFHGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 188
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
+ G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + K+ QE +PT+
Sbjct: 189 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQELGRKPTE 248
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQE-ITADTSIESPDSSVSKEL 493
E++A R+ ++ +K+ + A++P+S++ + ++++ + I AD E+P+ VSK L
Sbjct: 249 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADG--ETPEDQVSKSL 306
Query: 494 MRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
+R + N+L TL P+ER ++RLR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 307 LREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 366
>Q9MTH3_SINAL (tr|Q9MTH3) Sigma factor 2 (Precursor) OS=Sinapis alba GN=sig2 PE=2
SV=1
Length = 575
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 123/312 (39%), Positives = 193/312 (61%), Gaps = 1/312 (0%)
Query: 243 RVKRKINEAFDQNDPQR-LFLRSPGKKLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGR 301
R KR ++ D NDP R L + + KLL EE QL IQDLLKLE L+ L + G
Sbjct: 245 RKKRVASQEIDHNDPLRYLRMTTSSSKLLTAREEQQLSEGIQDLLKLERLQAELTERCGH 304
Query: 302 EPTMAEWAEGAGLKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQE 361
+PT ++WA AG+ + L+ ++ G + ++++IK+N+R+V+ +AK YQG G+ QDL+QE
Sbjct: 305 QPTFSQWASAAGVDKKTLRKRITHGTQCKDRMIKSNIRLVISIAKNYQGAGMDFQDLVQE 364
Query: 362 GSMGLLKSVKKFKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAK 421
G GL++ +KF G +F +YA+WWIKQA+RK++ SR IRLP + ++ EA+
Sbjct: 365 GCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEAR 424
Query: 422 KLYIQEGNLRPTKEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTS 481
K E +P E++A G+S ++ ++L + P S+ Q + + N E+ AD
Sbjct: 425 KQLYSETGKQPKNEEVAEATGLSMKRLMAVLLSPKPPRSLDQKIGINLNLKPSEVIADPE 484
Query: 482 IESPDSSVSKELMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERV 541
E+ + + K+ MR+ + +L +L +E+++IR RFG EDG K+L E+GE G+S+ERV
Sbjct: 485 AETSEDILMKQFMRQDLDKVLDSLSTREKQVIRWRFGMEDGRMKTLQEIGETMGVSRERV 544
Query: 542 RQLENRAFYKLK 553
RQ++ AF KLK
Sbjct: 545 RQIDTSAFRKLK 556
>B4WPM0_9SYNE (tr|B4WPM0) RNA polymerase sigma factor OS=Synechococcus sp. PCC
7335 GN=S7335_5088 PE=3 SV=1
Length = 404
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 119/299 (39%), Positives = 202/299 (67%), Gaps = 2/299 (0%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D RL+L+ G+ +LL EEE +L +I DLL+LE ++ + Q EPT A+WA +
Sbjct: 94 DSIRLYLQEIGRIRLLRAEEEIELARKIADLLELERIRDEIDDQLDDEPTDADWANAVDM 153
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
A + +L G R+++K++++NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF
Sbjct: 154 PLPAFRRRLYQGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 213
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
+ G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + KL QE +PT+
Sbjct: 214 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQELGRKPTE 273
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELM 494
E++A R+ ++ +K+ + A++P+S++ + ++++ + ++ E+P+ VSK L+
Sbjct: 274 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDEVSKSLL 332
Query: 495 RRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
R + ++LSTL P+ER ++RLR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 333 REDLESVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 391
>K9T849_9CYAN (tr|K9T849) RNA polymerase sigma factor OS=Pleurocapsa sp. PCC 7327
GN=Ple7327_3395 PE=3 SV=1
Length = 374
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 122/300 (40%), Positives = 203/300 (67%), Gaps = 4/300 (1%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D R++L+ G+ +LL EEE +L +I DLL+LE + L+ + GR P EWAE +
Sbjct: 64 DSIRVYLQEIGRIRLLRAEEEIELARKIADLLELERIYEQLRKRLGRFPNNREWAEAVEM 123
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
+ A Q +L G R+++K++++NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF
Sbjct: 124 ELPAFQRRLYLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 183
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
+ G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + K+ QE +PT+
Sbjct: 184 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTE 243
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQE-ITADTSIESPDSSVSKEL 493
E++A R+ ++ +K+ + A++P+S++ + ++++ + I AD E+P+ VSK L
Sbjct: 244 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADG--ETPEDEVSKNL 301
Query: 494 MRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
+R + N+L TL P+ER ++RLR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 302 LREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 361
>K9TM07_9CYAN (tr|K9TM07) RNA polymerase sigma factor OS=Oscillatoria acuminata
PCC 6304 GN=Oscil6304_3894 PE=3 SV=1
Length = 387
Score = 245 bits (626), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 118/299 (39%), Positives = 201/299 (67%), Gaps = 2/299 (0%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D RL+L+ G+ +LL +EE +L +I DLL+LE ++ L REP AEWA+ +
Sbjct: 77 DSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIREHLCDHLHREPYDAEWADAVKM 136
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
+ +L CG R+++K++++NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF
Sbjct: 137 SVGQFRHRLHCGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 196
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
+ G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + KL QE +PT+
Sbjct: 197 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTE 256
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELM 494
E++A R+ ++ +K+ + A++P+S++ + ++++ + ++ E+P+ VSK L+
Sbjct: 257 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKNLL 315
Query: 495 RRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
R + ++L TL P+ER ++RLR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 316 REDLESVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 374
>K9ZHC6_ANACC (tr|K9ZHC6) RNA polymerase sigma factor OS=Anabaena cylindrica
(strain ATCC 27899 / PCC 7122) GN=Anacy_2718 PE=3 SV=1
Length = 392
Score = 245 bits (626), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 119/299 (39%), Positives = 200/299 (66%), Gaps = 2/299 (0%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D RL+L+ G+ +LL +EE +L +I DLL+LE ++ LQ Q REP EWAE L
Sbjct: 82 DSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRDRLQDQLEREPQFKEWAEAVEL 141
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
+ +L G R+++K++++NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF
Sbjct: 142 PLPTFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 201
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
+ G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + KL QE +PT+
Sbjct: 202 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTE 261
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELM 494
E++A R+ ++ +K+ + A++P+S++ + ++++ + ++ E+P+ VSK L+
Sbjct: 262 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKNLL 320
Query: 495 RRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
R + +L +L P+ER ++RLR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 321 REDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 379
>F5UG89_9CYAN (tr|F5UG89) RNA polymerase sigma factor OS=Microcoleus vaginatus
FGP-2 GN=MicvaDRAFT_3216 PE=3 SV=1
Length = 388
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 118/299 (39%), Positives = 202/299 (67%), Gaps = 2/299 (0%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D RL+L+ G+ +LL +EE +L +I DLL+LE ++ L ++ REP +EWA +
Sbjct: 78 DSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVREQLLEEYNREPKDSEWANAVDM 137
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
A + +L G R++EK++++NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF
Sbjct: 138 ALPAFRHRLHVGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 197
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
+ G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + KL QE +PT+
Sbjct: 198 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTE 257
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELM 494
E++A R+ ++ +K+ + A++P+S++ + ++++ + ++ E+P+ VSK L+
Sbjct: 258 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKNLL 316
Query: 495 RRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
R + ++L TL P+ER ++RLR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 317 REDLESVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 375
>A0ZJC3_NODSP (tr|A0ZJC3) RNA polymerase sigma factor OS=Nodularia spumigena
CCY9414 GN=N9414_22328 PE=3 SV=1
Length = 391
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 119/299 (39%), Positives = 201/299 (67%), Gaps = 2/299 (0%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D RL+L+ G+ +LL +EE +L +I DLL+LE ++ LQ Q REP EWAE +
Sbjct: 81 DSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRDRLQEQLEREPEYREWAEAVQI 140
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
A + +L G R+++K++++NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF
Sbjct: 141 PLPAFRYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 200
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
+ G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + KL QE +PT+
Sbjct: 201 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTE 260
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELM 494
E++A R+ ++ +K+ + A++P+S++ + ++++ + ++ E+P+ VSK L+
Sbjct: 261 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKNLL 319
Query: 495 RRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
R + +L +L P+ER ++RLR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 320 REDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 378
>B9IPZ1_POPTR (tr|B9IPZ1) Predicted protein OS=Populus trichocarpa
GN=POPTRDRAFT_780378 PE=4 SV=1
Length = 564
Score = 244 bits (624), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 124/310 (40%), Positives = 196/310 (63%), Gaps = 1/310 (0%)
Query: 245 KRKINEAFDQNDPQRLFL-RSPGKKLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREP 303
KR + DQ+DP R F S +LL EE +L IQDLLKLE ++ L+ +FG +P
Sbjct: 241 KRVPVQEVDQSDPLRFFRGASTSSRLLSATEEVELSEGIQDLLKLERIEEELKERFGGKP 300
Query: 304 TMAEWAEGAGLKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGS 363
T A+WA A + L+ +L ++K+IK+N+R+V+ +AK YQG G++LQDL+QEG
Sbjct: 301 TFAQWAAAARVDQITLRKRLNYAILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGC 360
Query: 364 MGLLKSVKKFKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKL 423
GL++ V+KF G +F +YA+WWI+QA+R+++ SRTIRLP + ++ EA+K
Sbjct: 361 RGLVRGVEKFDASKGFKFSTYAHWWIRQAVRRSLSDQSRTIRLPFHMVDATYRVKEARKQ 420
Query: 424 YIQEGNLRPTKEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIE 483
+ E P +++A G+S ++S++L + P S+ Q + + + E+TAD E
Sbjct: 421 FYSENGRHPDDKEVAEATGLSMKRLSAVLLTPKAPRSLDQKMGFNMDLKLSEVTADPEAE 480
Query: 484 SPDSSVSKELMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQ 543
+ + + KE M++ + +L +L P+E ++IR RFG EDG K+L E+GE+ G+S+ER+RQ
Sbjct: 481 TAEDLLMKEFMKKDLERVLESLSPRENQVIRWRFGMEDGRMKTLQEIGELMGVSRERIRQ 540
Query: 544 LENRAFYKLK 553
+E AF KLK
Sbjct: 541 IELSAFRKLK 550
>K4AY41_SOLLC (tr|K4AY41) Uncharacterized protein OS=Solanum lycopersicum
GN=Solyc01g081490.2 PE=4 SV=1
Length = 613
Score = 244 bits (624), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 126/326 (38%), Positives = 202/326 (61%), Gaps = 3/326 (0%)
Query: 243 RVKRKINEAFDQNDPQRLFLRSP--GKKLLPIEEESQLIVQIQDLLKLEELKTSLQSQFG 300
R KR + D +DP R +LR +LL EE +L IQDLLKLE L+ L + G
Sbjct: 288 RKKRASVQDVDYSDPLR-YLRGTTCSSRLLTASEEQELSRGIQDLLKLERLQVELTERCG 346
Query: 301 REPTMAEWAEGAGLKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQ 360
+PT +WA AG+ L+ +L G ++K+IK+N+R+V+ +AK YQG G++LQDL+Q
Sbjct: 347 GQPTFTQWAAAAGVDQMTLRKRLNYGILCKDKMIKSNVRLVISIAKNYQGVGMNLQDLVQ 406
Query: 361 EGSMGLLKSVKKFKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEA 420
EG GL++ +KF G +F +YA+WWIKQA+RK++ SRTIRLP + ++ EA
Sbjct: 407 EGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEA 466
Query: 421 KKLYIQEGNLRPTKEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADT 480
+K + E P ++A G+S ++++++ + P S+ Q V +++ E+ AD
Sbjct: 467 RKQLLTENGRHPNDAEVAEATGLSMKRLAAVMLTPKAPRSLDQKVGFNESLKPSEVLADP 526
Query: 481 SIESPDSSVSKELMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKER 540
E+ + ++K+ MR+ + +L TL P+E++++R RFG EDG K+L E+GE+ G+S+ER
Sbjct: 527 DAETSEEILTKQFMRQDLEKVLDTLNPREKQVVRWRFGLEDGRMKTLQEIGELMGVSRER 586
Query: 541 VRQLENRAFYKLKKCLASQGLDAYAD 566
+RQ+E+ AF KLK ++ L Y +
Sbjct: 587 IRQIESCAFRKLKNKKRTKFLQQYIN 612
>K9VRX0_9CYAN (tr|K9VRX0) RNA polymerase sigma factor OS=Oscillatoria
nigro-viridis PCC 7112 GN=Osc7112_5754 PE=3 SV=1
Length = 388
Score = 244 bits (623), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 118/299 (39%), Positives = 202/299 (67%), Gaps = 2/299 (0%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D RL+L+ G+ +LL +EE +L +I DLL+LE ++ L ++ REP +EWA +
Sbjct: 78 DSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVREQLLEEYNREPKDSEWANAVEM 137
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
A + +L G R++EK++++NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF
Sbjct: 138 ALPAFRHRLHVGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 197
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
+ G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + KL QE +PT+
Sbjct: 198 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTE 257
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELM 494
E++A R+ ++ +K+ + A++P+S++ + ++++ + ++ E+P+ VSK L+
Sbjct: 258 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKNLL 316
Query: 495 RRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
R + ++L TL P+ER ++RLR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 317 REDLESVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 375
>G6FUP1_9CYAN (tr|G6FUP1) RNA polymerase sigma factor OS=Fischerella sp. JSC-11
GN=FJSC11DRAFT_2588 PE=3 SV=1
Length = 393
Score = 244 bits (622), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 119/299 (39%), Positives = 201/299 (67%), Gaps = 2/299 (0%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D RL+L+ G+ +LL +EE +L +I DLL+LE ++ LQ Q REP +EWAE L
Sbjct: 83 DSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRDRLQQQLEREPQYSEWAEAVQL 142
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
+ +L G R+++K++++NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF
Sbjct: 143 PLPQFRHRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 202
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
+ G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + KL QE +PT+
Sbjct: 203 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTE 262
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELM 494
E++A R+ ++ +K+ + A++P+S++ + ++++ + ++ E+P+ VSK L+
Sbjct: 263 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKNLL 321
Query: 495 RRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
R + +L +L P+ER ++RLR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 322 REDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 380
>B9I6F1_POPTR (tr|B9I6F1) Predicted protein OS=Populus trichocarpa
GN=POPTRDRAFT_834586 PE=4 SV=1
Length = 567
Score = 244 bits (622), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 125/302 (41%), Positives = 193/302 (63%), Gaps = 1/302 (0%)
Query: 253 DQNDPQRLFL-RSPGKKLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEG 311
DQ+DP R F S +LL EE +L IQDLLKLE ++ L+ +FG EP+ A+WA
Sbjct: 252 DQSDPLRFFRGASSSSRLLSATEEVELSEGIQDLLKLERIEEELKERFGGEPSFAQWAAA 311
Query: 312 AGLKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVK 371
AG+ L+ +L G ++K+IK+N+R+V+ +AK YQG G++LQDL+QEG GL++ +
Sbjct: 312 AGVDQLTLRKRLNYGILCKDKMIKSNVRLVISIAKNYQGTGMNLQDLVQEGCRGLVRGAE 371
Query: 372 KFKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLR 431
KF G +F +YA+WWIKQA+RK++ SRTIRLP + ++ EA+K E
Sbjct: 372 KFDASKGFKFSTYAHWWIKQAVRKSLSDRSRTIRLPFHMVDATYRVKEARKQLYSENGRH 431
Query: 432 PTKEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSK 491
P +++A G+S ++S++L + P S+ Q + + + E+TAD E+ + + K
Sbjct: 432 PDDKEVAEAAGLSMKRLSAVLLTPKAPRSLDQKMGFNMDLKLSEVTADPEAETAEDLLMK 491
Query: 492 ELMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYK 551
E M++ + +L +L P+E +++R RFG EDG K+L E+GE+ G+S+ERVRQ+E AF K
Sbjct: 492 EFMKKDLAKVLGSLSPRENQVVRWRFGMEDGRMKTLQEIGELMGVSRERVRQIELSAFRK 551
Query: 552 LK 553
LK
Sbjct: 552 LK 553
>K9PJQ4_9CYAN (tr|K9PJQ4) RNA polymerase sigma factor OS=Calothrix sp. PCC 7507
GN=Cal7507_2774 PE=3 SV=1
Length = 390
Score = 244 bits (622), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 118/299 (39%), Positives = 201/299 (67%), Gaps = 2/299 (0%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D RL+L+ G+ +LL +EE +L +I DLL+LE ++ L Q R+P +EWAE L
Sbjct: 80 DSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVREKLSEQLDRDPKDSEWAEAVQL 139
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
A + +L G R+++K++++NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF
Sbjct: 140 PLPAFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 199
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
+ G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + KL QE +PT+
Sbjct: 200 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTE 259
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELM 494
E++A R+ ++ +K+ + A++P+S++ + ++++ + ++ E+P+ VSK L+
Sbjct: 260 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKNLL 318
Query: 495 RRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
R + +L +L P+ER ++RLR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 319 REDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 377
>M4EPL2_BRARP (tr|M4EPL2) Uncharacterized protein OS=Brassica rapa subsp.
pekinensis GN=Bra030732 PE=4 SV=1
Length = 570
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 122/317 (38%), Positives = 195/317 (61%), Gaps = 1/317 (0%)
Query: 249 NEAFDQNDPQR-LFLRSPGKKLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAE 307
++ D NDP R L + + KLL EE++L IQDLLKLE L+ L + G +PT +
Sbjct: 250 SQEIDHNDPLRYLRMTTSSSKLLTAREETELSEGIQDLLKLERLQVELTERCGHQPTFGQ 309
Query: 308 WAEGAGLKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLL 367
WA AG+ + L+ ++ G + ++++IK+N+R+V+ +AK YQG G++LQDL+QEG GL+
Sbjct: 310 WASAAGVDQKTLRKRINHGTQCKDRMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLV 369
Query: 368 KSVKKFKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQE 427
+ +KF G +F +YA+WWIKQA+RK++ SR IRLP + ++ EA+K E
Sbjct: 370 RGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSE 429
Query: 428 GNLRPTKEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDS 487
+P E++A G+S ++ ++L + P S+ Q + + N E+ +D E+ +
Sbjct: 430 TGQKPKNEEVAEATGLSMKRLMAVLLAPKPPRSLDQKIGINLNLKPSEVISDPEAETSED 489
Query: 488 SVSKELMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENR 547
+ K+ MR + +L +L +E+++IR RFG EDG K+L E+GE G+S+ERVRQ+E+
Sbjct: 490 ILIKQFMREDLDKVLDSLSTREKQVIRWRFGMEDGRMKTLQEIGETMGVSRERVRQIESS 549
Query: 548 AFYKLKKCLASQGLDAY 564
AF KLK + L Y
Sbjct: 550 AFRKLKNKKRNNHLQQY 566
>F4XPJ0_9CYAN (tr|F4XPJ0) RNA polymerase sigma factor OS=Moorea producens 3L
GN=LYNGBM3L_34960 PE=3 SV=1
Length = 373
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 122/300 (40%), Positives = 202/300 (67%), Gaps = 4/300 (1%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D RL+L+ G+ +LL +EE +L +I DLL+LE ++ L Q REP EWA +
Sbjct: 63 DSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRERLSEQLEREPGDREWATEVDM 122
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
+ A + +L G R++EK++++NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF
Sbjct: 123 ELPAFRYRLHVGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 182
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
+ G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + KL QE +PT+
Sbjct: 183 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTE 242
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQE-ITADTSIESPDSSVSKEL 493
E++A R+ ++ +K+ + A++P+S++ + ++++ + I AD E+P+ VSK L
Sbjct: 243 EEIADRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADG--ETPEDQVSKNL 300
Query: 494 MRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
+R + ++L TL P+ER ++RLR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 301 LREDLESVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 360
>K9Q8G4_9NOSO (tr|K9Q8G4) RNA polymerase sigma factor OS=Nostoc sp. PCC 7107
GN=Nos7107_0427 PE=3 SV=1
Length = 391
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 118/299 (39%), Positives = 201/299 (67%), Gaps = 2/299 (0%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D RL+L+ G+ +LL +EE +L +I DLL+LE ++ L Q R+P +EWAE L
Sbjct: 81 DSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRERLSEQLDRDPRDSEWAEAVQL 140
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
A + +L G R+++K++++NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF
Sbjct: 141 PLPAFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 200
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
+ G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + KL QE +PT+
Sbjct: 201 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTE 260
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELM 494
E++A R+ ++ +K+ + A++P+S++ + ++++ + ++ E+P+ VSK L+
Sbjct: 261 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKNLL 319
Query: 495 RRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
R + +L +L P+ER ++RLR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 320 REDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 378
>K9WH45_9CYAN (tr|K9WH45) RNA polymerase sigma factor OS=Microcoleus sp. PCC 7113
GN=Mic7113_4030 PE=3 SV=1
Length = 373
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 120/300 (40%), Positives = 203/300 (67%), Gaps = 4/300 (1%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D RL+L+ G+ +LL +EE +L +I DLL+LE ++ L Q REP +EWA +
Sbjct: 63 DSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIRDRLSDQLEREPQDSEWATEVNM 122
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
+A + +L G R+++K++++NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF
Sbjct: 123 PLQAFRHRLYVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 182
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
+ G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + K+ QE +PT+
Sbjct: 183 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMGRKPTE 242
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQE-ITADTSIESPDSSVSKEL 493
E++A R+ ++ +K+ + A++P+S++ + ++++ + I AD E+P+ VSK L
Sbjct: 243 EEIADRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADG--ETPEDQVSKNL 300
Query: 494 MRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
+R + ++L TL P+ER ++RLR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 301 LREDLESVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 360
>C7QR23_CYAP0 (tr|C7QR23) RNA polymerase sigma factor OS=Cyanothece sp. (strain
PCC 8802) GN=Cyan8802_0150 PE=3 SV=1
Length = 379
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 119/300 (39%), Positives = 202/300 (67%), Gaps = 4/300 (1%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D R++L+ G+ +LL EEE +L +I DLL+LE ++ + GR PT EW++ +
Sbjct: 69 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERIREKMTEHMGRFPTDLEWSQAINM 128
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
+ A Q +L G ++++K++ +NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF
Sbjct: 129 EWHAFQRRLYLGRKAKDKMVHSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 188
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
+ G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + K+ QE +PT+
Sbjct: 189 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTE 248
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQE-ITADTSIESPDSSVSKEL 493
E++A R+ ++ +K+ + A++P+S++ + ++++ + I AD E+P+ VSK L
Sbjct: 249 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADG--ENPEDEVSKNL 306
Query: 494 MRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
+R + N+L TL P+ER ++RLR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 307 LREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 366
>B7K1V2_CYAP8 (tr|B7K1V2) RNA polymerase sigma factor OS=Cyanothece sp. (strain
PCC 8801) GN=PCC8801_0154 PE=3 SV=1
Length = 379
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 119/300 (39%), Positives = 202/300 (67%), Gaps = 4/300 (1%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D R++L+ G+ +LL EEE +L +I DLL+LE ++ + GR PT EW++ +
Sbjct: 69 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERIREKMTEHMGRFPTDLEWSQAINM 128
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
+ A Q +L G ++++K++ +NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF
Sbjct: 129 EWHAFQRRLYLGRKAKDKMVHSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 188
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
+ G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + K+ QE +PT+
Sbjct: 189 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTE 248
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQE-ITADTSIESPDSSVSKEL 493
E++A R+ ++ +K+ + A++P+S++ + ++++ + I AD E+P+ VSK L
Sbjct: 249 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADG--ENPEDEVSKNL 306
Query: 494 MRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
+R + N+L TL P+ER ++RLR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 307 LREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 366
>Q9L4T2_NOSP7 (tr|Q9L4T2) RNA polymerase sigma factor OS=Nostoc punctiforme
(strain ATCC 29133 / PCC 73102) GN=sigA PE=3 SV=1
Length = 389
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 118/299 (39%), Positives = 201/299 (67%), Gaps = 2/299 (0%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D RL+L+ G+ +LL +EE +L +I DLL+LE ++ L Q R+P +EWAE L
Sbjct: 79 DSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRERLSEQLDRDPRDSEWAEAVQL 138
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
A + +L G R+++K++++NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF
Sbjct: 139 PLPAFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 198
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
+ G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + KL QE +PT+
Sbjct: 199 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTE 258
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELM 494
E++A R+ ++ +K+ + A++P+S++ + ++++ + ++ E+P+ VSK L+
Sbjct: 259 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKNLL 317
Query: 495 RRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
R + +L +L P+ER ++RLR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 318 REDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 376
>Q59965_SYNP2 (tr|Q59965) RNA polymerase sigma factor OS=Synechococcus sp.
(strain ATCC 27264 / PCC 7002 / PR-6) GN=sigA PE=3 SV=1
Length = 375
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 121/300 (40%), Positives = 202/300 (67%), Gaps = 4/300 (1%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D R++L+ G+ +LL EEE +L +I DLL+LE ++ L R PT EWAE AG+
Sbjct: 65 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERMREQLTEHESRVPTDKEWAEAAGM 124
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
+ + +L G R+++K++++NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF
Sbjct: 125 PLKDFRRRLFHGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 184
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
+ G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + K+ QE +PT+
Sbjct: 185 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQELGRKPTE 244
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQE-ITADTSIESPDSSVSKEL 493
E++A R+ ++ +K+ + A++P+S++ + ++++ + I AD E+P+ VSK L
Sbjct: 245 EEIAERMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADG--ETPEDQVSKSL 302
Query: 494 MRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
+R + N+L TL +ER ++RLR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 303 LREDLENVLDTLSARERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 362
>K9QTZ2_NOSS7 (tr|K9QTZ2) RNA polymerase sigma factor OS=Nostoc sp. (strain ATCC
29411 / PCC 7524) GN=Nos7524_2732 PE=3 SV=1
Length = 390
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 118/299 (39%), Positives = 201/299 (67%), Gaps = 2/299 (0%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D RL+L+ G+ +LL +EE +L +I DLL+LE ++ L Q R+P +EWAE L
Sbjct: 80 DSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIRERLSEQLERDPHDSEWAEAVQL 139
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
A + +L G R+++K++++NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF
Sbjct: 140 PLPAFRYRLHLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 199
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
+ G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + KL QE +PT+
Sbjct: 200 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTE 259
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELM 494
E++A R+ ++ +K+ + A++P+S++ + ++++ + ++ E+P+ VSK L+
Sbjct: 260 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKNLL 318
Query: 495 RRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
R + +L +L P+ER ++RLR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 319 REDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 377
>B4W0Y8_9CYAN (tr|B4W0Y8) RNA polymerase sigma factor OS=Coleofasciculus
chthonoplastes PCC 7420 GN=MC7420_8305 PE=3 SV=1
Length = 380
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 121/300 (40%), Positives = 203/300 (67%), Gaps = 4/300 (1%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D RL+L+ G+ +LL +EE +L +I DLL+LE ++ L Q REP EWA+ +
Sbjct: 70 DSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIRDRLYDQLEREPKEGEWAKEVEM 129
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
+ A + +L G R++EK++++NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF
Sbjct: 130 ELPAFRQRLFLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 189
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
+ G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + K+ QE +PT+
Sbjct: 190 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQELGRKPTE 249
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQE-ITADTSIESPDSSVSKEL 493
E++A R+ ++ +K+ + A++P+S++ + ++++ + I AD E+P+ VSK L
Sbjct: 250 EEIADRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADG--ETPEDQVSKNL 307
Query: 494 MRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
+R + ++L TL P+ER ++RLR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 308 LREDLESVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 367
>D7E0K7_NOSA0 (tr|D7E0K7) RNA polymerase sigma factor OS=Nostoc azollae (strain
0708) GN=Aazo_2817 PE=3 SV=1
Length = 390
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 118/299 (39%), Positives = 199/299 (66%), Gaps = 2/299 (0%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D RL+L+ G+ +LL +EE +L +I DLL+LE ++ L Q REP EWAE L
Sbjct: 80 DSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRDRLYEQLEREPQFKEWAEAVQL 139
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
+ +L G R+++K++++NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF
Sbjct: 140 PLPTFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 199
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
+ G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + KL QE +PT+
Sbjct: 200 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTE 259
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELM 494
E++A R+ ++ +K+ + A++P+S++ + ++++ + ++ E+P+ VSK L+
Sbjct: 260 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKNLL 318
Query: 495 RRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
R + +L +L P+ER ++RLR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 319 REDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 377
>D4TQC8_9NOST (tr|D4TQC8) RNA polymerase sigma factor OS=Raphidiopsis brookii D9
GN=CRD_00598 PE=3 SV=1
Length = 390
Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 118/299 (39%), Positives = 199/299 (66%), Gaps = 2/299 (0%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D RL+L+ G+ +LL +EE +L +I DLL+LE ++ L Q REP EWAE L
Sbjct: 80 DSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRDDLYEQLEREPEFREWAEAVKL 139
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
+ +L G R+++K++++NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF
Sbjct: 140 PLPTFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 199
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
+ G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + KL QE +PT+
Sbjct: 200 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTE 259
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELM 494
E++A R+ ++ +K+ + A++P+S++ + ++++ + ++ E+P+ VSK L+
Sbjct: 260 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKSLL 318
Query: 495 RRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
R + +L +L P+ER ++RLR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 319 REDLERVLDSLGPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 377
>M1D2M3_SOLTU (tr|M1D2M3) Uncharacterized protein OS=Solanum tuberosum
GN=PGSC0003DMG400031111 PE=4 SV=1
Length = 613
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 124/326 (38%), Positives = 201/326 (61%), Gaps = 3/326 (0%)
Query: 243 RVKRKINEAFDQNDPQRLFLRSP--GKKLLPIEEESQLIVQIQDLLKLEELKTSLQSQFG 300
R KR + D +DP R +LR +LL EE +L IQDLLKLE L+ L + G
Sbjct: 288 RKKRASVQDVDYSDPLR-YLRGTTCSSRLLTASEEQELSRGIQDLLKLERLQVELTERCG 346
Query: 301 REPTMAEWAEGAGLKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQ 360
+PT +WA AG+ L+ +L G ++K+IK+N+R+V+ +AK YQG G++LQDL+Q
Sbjct: 347 GQPTFTQWAAAAGVDQMTLRKRLNYGILCKDKMIKSNVRLVISIAKNYQGVGMNLQDLVQ 406
Query: 361 EGSMGLLKSVKKFKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEA 420
EG GL++ +KF G +F +YA+WWIKQA+RK++ SR IRLP + ++ EA
Sbjct: 407 EGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEA 466
Query: 421 KKLYIQEGNLRPTKEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADT 480
+K + E P ++A G+S ++++++ + P S+ Q + +++ E+ AD
Sbjct: 467 RKQLLTENGRHPNDAEVAEAAGLSMKRLAAVMLTPKAPRSLDQKIGFNESLKPSEVLADP 526
Query: 481 SIESPDSSVSKELMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKER 540
E+ + ++K+ MR+ + +L TL P+E++++R RFG EDG K+L E+GE+ G+S+ER
Sbjct: 527 EAETSEEILTKQFMRQDLEKVLDTLNPREKQVVRWRFGLEDGRMKTLQEIGELMGVSRER 586
Query: 541 VRQLENRAFYKLKKCLASQGLDAYAD 566
+RQ+E+ AF KLK ++ L Y +
Sbjct: 587 IRQIESCAFRKLKNKKRTKFLQQYIN 612
>G7J988_MEDTR (tr|G7J988) RNA polymerase sigma factor rpoD OS=Medicago truncatula
GN=MTR_3g118290 PE=4 SV=1
Length = 572
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 118/291 (40%), Positives = 189/291 (64%)
Query: 274 EESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGLKCRALQMKLRCGNRSREKL 333
EE + IQDL+KLE+L+ L + G +PT A+WA AG+ + L+ +L G +EK+
Sbjct: 279 EEIKFSEGIQDLIKLEKLQEDLAEKCGGQPTFAQWATMAGVDQKTLRKRLNYGVFCKEKM 338
Query: 334 IKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFKPQVGCRFGSYAYWWIKQAI 393
IK+N+R+V+ VAK YQG G+SLQDL+QEG GL++ +K+ G +F +YA+WWIKQA+
Sbjct: 339 IKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFSTYAHWWIKQAV 398
Query: 394 RKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTKEDLARRVGISEDKISSLLY 453
RK++ SRTIRLP + K+ EA+K E +P E++A G+S ++S++L
Sbjct: 399 RKSLSVQSRTIRLPFHMVGATYKVKEARKQLYSENGRQPDDEEVAEATGLSMKRLSAVLL 458
Query: 454 VARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELMRRHVLNLLSTLRPKERRII 513
+ P S++Q V +Q+ E+ AD E+ + + K+ M++ + +L +L P+E+++I
Sbjct: 459 TPKAPRSLEQKVGINQSLKLSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVI 518
Query: 514 RLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLKKCLASQGLDAY 564
+ RFG +DG K+L E+GE+ G+S+ER+RQ+E+ AF KLK ++ L Y
Sbjct: 519 KWRFGMDDGRMKTLQEIGEMMGVSRERIRQIESCAFRKLKNKKRAKHLQQY 569
>D8G4S3_9CYAN (tr|D8G4S3) RNA polymerase sigma factor OS=Oscillatoria sp. PCC
6506 GN=OSCI_3480020 PE=3 SV=1
Length = 391
Score = 241 bits (616), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 117/299 (39%), Positives = 201/299 (67%), Gaps = 2/299 (0%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D RL+L+ G+ +LL +EE +L +I DLL+LE ++ L + R+P EWA G+
Sbjct: 81 DSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIREQLCEELERDPKDNEWANAVGM 140
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
A + +L G R+++K++++NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF
Sbjct: 141 PLPAFRHRLHLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 200
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
+ G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + KL QE +PT+
Sbjct: 201 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTE 260
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELM 494
E++A R+ ++ +K+ + A++P+S++ + ++++ + ++ E+P+ VSK L+
Sbjct: 261 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKNLL 319
Query: 495 RRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
R + ++L TL P+ER ++RLR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 320 REDLESVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 378
>K9XY46_STAC7 (tr|K9XY46) RNA polymerase sigma factor OS=Stanieria cyanosphaera
(strain ATCC 29371 / PCC 7437) GN=Sta7437_3976 PE=3 SV=1
Length = 372
Score = 241 bits (616), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 120/300 (40%), Positives = 203/300 (67%), Gaps = 4/300 (1%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D R++L+ G+ +LL EEE +L +I DLL+LE ++ + + R P+ AEWAE +
Sbjct: 62 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERIRERMADRLERYPSDAEWAEEVNM 121
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
+ + +L G R+++K++++NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF
Sbjct: 122 RLPEFRRRLFYGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 181
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
+ G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + KL QE +PT+
Sbjct: 182 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTE 241
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQE-ITADTSIESPDSSVSKEL 493
E++A R+ ++ +K+ + A++P+S++ + ++++ + I AD E+P+ VSK L
Sbjct: 242 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADG--ETPEDQVSKSL 299
Query: 494 MRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
+R + N+L TL P+ER ++RLR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 300 LREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 359
>M1WSP5_9NOST (tr|M1WSP5) RNA polymerase sigma factor OS=Richelia intracellularis
HH01 GN=RINTHH_14140 PE=3 SV=1
Length = 390
Score = 241 bits (615), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 116/299 (38%), Positives = 200/299 (66%), Gaps = 2/299 (0%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D RL+L+ G+ +LL +EE +L +I DLL++E ++ L Q REP +EWAE +
Sbjct: 80 DSIRLYLQEIGRIRLLRADEEIELARKIADLLEMERVRDRLYDQLAREPKYSEWAEAVKI 139
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
+ +L G R+++K++++NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF
Sbjct: 140 PLPQFRYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 199
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
+ G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + KL QE +PT+
Sbjct: 200 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTE 259
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELM 494
E++A R+ ++ +K+ + A++P+S++ + ++++ + ++ E+P+ VSK L+
Sbjct: 260 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKGLL 318
Query: 495 RRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
R + +L +L P+ER ++RLR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 319 REDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 377
>K9TYL7_9CYAN (tr|K9TYL7) RNA polymerase sigma factor OS=Chroococcidiopsis
thermalis PCC 7203 GN=Chro_1963 PE=3 SV=1
Length = 392
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 117/299 (39%), Positives = 200/299 (66%), Gaps = 2/299 (0%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D RL+L+ G+ +LL +EE +L +I DLL+LE ++ L + REP +EWAE
Sbjct: 82 DSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIREKLSDRLDREPQDSEWAEAVKQ 141
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
A + +L G R+++K++++NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF
Sbjct: 142 NLPAFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 201
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
+ G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + KL QE +PT+
Sbjct: 202 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTE 261
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELM 494
E++A R+ ++ +K+ + A++P+S++ + ++++ + ++ E+P+ VSK L+
Sbjct: 262 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKNLL 320
Query: 495 RRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
R + +L +L P+ER ++RLR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 321 REDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 379
>Q3MDA3_ANAVT (tr|Q3MDA3) RNA polymerase sigma factor OS=Anabaena variabilis
(strain ATCC 29413 / PCC 7937) GN=Ava_1410 PE=3 SV=1
Length = 390
Score = 241 bits (614), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 117/299 (39%), Positives = 201/299 (67%), Gaps = 2/299 (0%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D RL+L+ G+ +LL +EE +L +I DLL+LE ++ L + R+P +EWAE L
Sbjct: 80 DSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRERLSEKLERDPRDSEWAEAVQL 139
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
A + +L G R+++K++++NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF
Sbjct: 140 PLPAFRYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 199
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
+ G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + KL QE +PT+
Sbjct: 200 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTE 259
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELM 494
E++A R+ ++ +K+ + A++P+S++ + ++++ + ++ E+P+ VSK L+
Sbjct: 260 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKNLL 318
Query: 495 RRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
R + +L +L P+ER ++RLR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 319 REDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 377
>M5VUM6_PRUPE (tr|M5VUM6) Uncharacterized protein OS=Prunus persica
GN=PRUPE_ppa006657mg PE=4 SV=1
Length = 401
Score = 240 bits (613), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 124/324 (38%), Positives = 204/324 (62%), Gaps = 3/324 (0%)
Query: 243 RVKRKINEAFDQNDPQRLFLRSPG--KKLLPIEEESQLIVQIQDLLKLEELKTSLQSQFG 300
R KR + D +DP R +LR+ +LL EE +L IQ+LLKLE+L+ L + G
Sbjct: 76 RKKRASLQDVDHSDPLR-YLRATTHTSRLLTANEEIELSEGIQELLKLEKLQEELVQRCG 134
Query: 301 REPTMAEWAEGAGLKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQ 360
+PT+A+WA AG+ + L+ ++ G ++K+IK+N+R+V+ +AK YQG G++LQDL+Q
Sbjct: 135 GQPTIAQWAAAAGVDQKTLRKRINYGILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQ 194
Query: 361 EGSMGLLKSVKKFKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEA 420
+G GL++ +KF G +F +YA+WWIKQA+RK++ SRTIRLP + ++ EA
Sbjct: 195 QGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVREA 254
Query: 421 KKLYIQEGNLRPTKEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADT 480
KK P E++A G+S +++++L + P S++Q + +QN E+ AD
Sbjct: 255 KKQLYSVNGRHPNDEEVAEATGLSMKRLAAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 314
Query: 481 SIESPDSSVSKELMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKER 540
E+ + + K+ M++ + +L +L +E++++R RFG EDG K+L E+GE+ G+S+ER
Sbjct: 315 EAETAEDMLMKKFMKQDLEKVLDSLNAREKQVVRWRFGLEDGRMKTLQEIGELMGVSRER 374
Query: 541 VRQLENRAFYKLKKCLASQGLDAY 564
+RQ+E+ AF KLK ++ L Y
Sbjct: 375 IRQIESCAFRKLKNKKRTKHLQQY 398
>M0STE2_MUSAM (tr|M0STE2) Uncharacterized protein OS=Musa acuminata subsp.
malaccensis PE=4 SV=1
Length = 201
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 117/204 (57%), Positives = 158/204 (77%), Gaps = 4/204 (1%)
Query: 367 LKSVKKFKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQ 426
+KS++KFKP GCRF +Y+YWWI+Q+IRKAIF +SR IRLP+ +Y L +I A++L IQ
Sbjct: 1 MKSLEKFKPNAGCRFPTYSYWWIRQSIRKAIFQNSRIIRLPDNIYAFLKEIKYARRLCIQ 60
Query: 427 EGNLRPTKEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPD 486
EG L PT E++A+RVGI+ K+ LL R P+S+Q+ W QN TFQEITAD +E PD
Sbjct: 61 EGRL-PTNEEIAKRVGITVKKLEKLLLYFRDPVSIQEHAW--QNVTFQEITADPGVEIPD 117
Query: 487 SSVSKELMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLEN 546
V+K+LMR+HV ++L TL+PKER+II+ RFG + ++K+LSE+G+I+GLS ER+RQLE+
Sbjct: 118 LIVAKQLMRQHVRDILKTLKPKERKIIQYRFGMHENKKKTLSEIGDIYGLSNERIRQLES 177
Query: 547 RAFYKLKK-CLASQGLDAYADLLV 569
RA KLK+ CL +QGL AY DLLV
Sbjct: 178 RALNKLKEWCLTTQGLKAYRDLLV 201
>K9XHA2_9CHRO (tr|K9XHA2) RNA polymerase sigma factor OS=Gloeocapsa sp. PCC 7428
GN=Glo7428_2515 PE=3 SV=1
Length = 390
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 116/299 (38%), Positives = 200/299 (66%), Gaps = 2/299 (0%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D RL+L+ G+ +LL +EE +L +I +LL++E ++ L Q REP +EWAE L
Sbjct: 80 DSIRLYLQEIGRIRLLRADEEIELARKIAELLEMERVRERLLEQLDREPQDSEWAEAVQL 139
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
+ +L G R+++K++++NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF
Sbjct: 140 SLPTFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 199
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
+ G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + KL QE +PT+
Sbjct: 200 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTE 259
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELM 494
E++A R+ ++ +K+ + A++P+S++ + ++++ + ++ E+P+ VSK L+
Sbjct: 260 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKSLL 318
Query: 495 RRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
R + +L +L P+ER ++RLR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 319 REDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 377
>K9V2E9_9CYAN (tr|K9V2E9) RNA polymerase sigma factor OS=Calothrix sp. PCC 6303
GN=Cal6303_3070 PE=3 SV=1
Length = 389
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 116/299 (38%), Positives = 200/299 (66%), Gaps = 2/299 (0%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D RL+L+ G+ +LL +EE +L +I DLL+LE ++ L Q R+P +EWAE +
Sbjct: 79 DSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIREKLSQQLDRDPKDSEWAEAVQV 138
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
+ +L G R+++K++++NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF
Sbjct: 139 PLPQFRYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 198
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
+ G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + KL QE +PT+
Sbjct: 199 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTE 258
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELM 494
E++A R+ ++ +K+ + A++P+S++ + ++++ + ++ E+P+ VSK L+
Sbjct: 259 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKNLL 317
Query: 495 RRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
R + +L +L P+ER ++RLR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 318 REDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 376
>D4TFK7_9NOST (tr|D4TFK7) RNA polymerase sigma factor OS=Cylindrospermopsis
raciborskii CS-505 GN=CRC_01163 PE=3 SV=1
Length = 390
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 117/299 (39%), Positives = 199/299 (66%), Gaps = 2/299 (0%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D RL+L+ G+ +LL +EE +L +I DLL+LE ++ L Q REP EWAE L
Sbjct: 80 DSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRDDLYEQLEREPEFREWAEAVKL 139
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
+ +L G R+++K++++NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF
Sbjct: 140 PLPTFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 199
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
+ G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + KL QE +PT+
Sbjct: 200 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTE 259
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELM 494
E++A R+ ++ +K+ + A++P+S++ + ++++ + ++ E+P+ VSK L+
Sbjct: 260 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKSLL 318
Query: 495 RRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
R + +L +L P+ER ++RLR+G ++G K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 319 REDLERVLDSLGPRERDVLRLRYGLDNGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 377
>K9UM88_9CHRO (tr|K9UM88) RNA polymerase sigma factor OS=Chamaesiphon minutus PCC
6605 GN=Cha6605_4648 PE=3 SV=1
Length = 380
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 127/329 (38%), Positives = 212/329 (64%), Gaps = 8/329 (2%)
Query: 227 DNDTYLARKDDPQERIRVKRKINEAFDQNDPQRLFLRSPGK-KLLPIEEESQLIVQIQDL 285
D D L + + R++ K+K F + D RL+L+ G+ +LL +EE +L +I DL
Sbjct: 45 DEDGKLGKVKASRRRVQTKKK---QFTE-DSIRLYLQEIGRIRLLRADEEIELARKIADL 100
Query: 286 LKLEELKTSLQSQFGREPTMAEWAEGAGLKCRALQMKLRCGNRSREKLIKANLRMVLHVA 345
L+LE ++ L + REP EWA A + + +L G R+++K++++NLR+V+ +A
Sbjct: 101 LELERMREKLLNDLDREPHDREWAAVASMPLNQFRHRLFLGRRAKDKMVQSNLRLVVSIA 160
Query: 346 KTYQGRGLSLQDLLQEGSMGLLKSVKKFKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIR 405
K Y RGLS QDL+QEGS+GL+++ +KF + G +F +YA WWI+QAI +AI SRTIR
Sbjct: 161 KKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIR 220
Query: 406 LPEKVYTQLGKILEAKKLYIQEGNLRPTKEDLARRVGISEDKISSLLYVARIPMSMQQTV 465
LP +Y + +I + KL QE +PT+E++A R+ ++ +K+ + A++P+S++ +
Sbjct: 221 LPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPI 280
Query: 466 WTDQNTTFQE-ITADTSIESPDSSVSKELMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQ 524
++++ + I AD E P+ VSK L+R + +L TL P+ER ++RLR+G +DG
Sbjct: 281 GKEEDSRLGDFIEADG--EMPEDQVSKSLLREDLEGVLDTLSPRERDVLRLRYGLDDGRM 338
Query: 525 KSLSEVGEIFGLSKERVRQLENRAFYKLK 553
K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 339 KTLEEIGQIFNVTRERIRQIEAKALRKLR 367
>K9W354_9CYAN (tr|K9W354) RNA polymerase sigma factor OS=Crinalium epipsammum PCC
9333 GN=Cri9333_3816 PE=3 SV=1
Length = 383
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 119/300 (39%), Positives = 202/300 (67%), Gaps = 4/300 (1%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D RL+L+ G+ +LL +EE +L +I +LL+LE + L++Q REP +EWA +
Sbjct: 73 DSIRLYLQEIGRIRLLRADEEIELARKIAELLQLERVYEQLKAQLDREPKDSEWALAVEM 132
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
+ +L G R+++K++++NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF
Sbjct: 133 PLPQFRHRLYLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 192
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
+ G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + KL QE +PT+
Sbjct: 193 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTE 252
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQE-ITADTSIESPDSSVSKEL 493
E++A R+ ++ +K+ + A++P+S++ + ++++ + I AD E+P+ VSK L
Sbjct: 253 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADG--ETPEDEVSKNL 310
Query: 494 MRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
+R + ++L TL P+ER ++RLR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 311 LREDLESVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 370
>K9R7S3_9CYAN (tr|K9R7S3) RNA polymerase sigma factor OS=Rivularia sp. PCC 7116
GN=Riv7116_1014 PE=3 SV=1
Length = 389
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 117/299 (39%), Positives = 200/299 (66%), Gaps = 2/299 (0%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D RL+L+ G+ +LL +EE +L +I DLL+LE + L Q R+P +EWAE L
Sbjct: 79 DSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVGDRLVQQLERQPQESEWAEAVQL 138
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
+ + +L G R+++K++++NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF
Sbjct: 139 PLQKFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 198
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
+ G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + KL QE +PT+
Sbjct: 199 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTE 258
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELM 494
E++A R+ ++ +K+ + A++P+S++ + ++++ + ++ E+P+ VSK L+
Sbjct: 259 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKSLL 317
Query: 495 RRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
R + +L +L P+ER ++RLR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 318 REDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 376
>Q7U5C4_SYNPX (tr|Q7U5C4) RNA polymerase sigma factor OS=Synechococcus sp.
(strain WH8102) GN=sigA PE=3 SV=1
Length = 471
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 120/300 (40%), Positives = 200/300 (66%), Gaps = 4/300 (1%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D R++L+ G+ +LL +EE +L +I DLL LEEL +S GREP EWA +
Sbjct: 161 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAAQFESDNGREPDKKEWAALVEM 220
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
+ +L G R++EK++++NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF
Sbjct: 221 PLIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 280
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
+ G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + K+ QE +PT+
Sbjct: 281 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTE 340
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQE-ITADTSIESPDSSVSKEL 493
E++A + ++ +K+ + A++P+S++ + ++++ + I AD IE+P+ V+K L
Sbjct: 341 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEAD--IENPEQDVAKNL 398
Query: 494 MRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
+R + +L+TL P+ER ++RLR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 399 LREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLR 458
>L8LB48_9CYAN (tr|L8LB48) RNA polymerase sigma factor OS=Leptolyngbya sp. PCC
6406 GN=Lep6406DRAFT_00037560 PE=3 SV=1
Length = 372
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 118/299 (39%), Positives = 198/299 (66%), Gaps = 2/299 (0%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D RL+L+ G+ +LL EEE +L +I DLL+LE + L R+P AEWAE +
Sbjct: 62 DSIRLYLQEIGRIRLLRAEEEIELARKIADLLELERVYDQLAETLQRDPQDAEWAEAVDM 121
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
Q +L G R+++K++++NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF
Sbjct: 122 PLPKFQRRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 181
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
+ G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + KL QE +PT+
Sbjct: 182 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTE 241
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELM 494
E++A R+ ++ +K+ + A++P+S++ + ++++ + ++ E+P+ VSK L+
Sbjct: 242 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDEVSKSLL 300
Query: 495 RRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
R + ++L TL +ER ++RLR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 301 REDLESVLGTLSARERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 359
>Q05YJ7_9SYNE (tr|Q05YJ7) RNA polymerase sigma factor OS=Synechococcus sp. BL107
GN=BL107_10222 PE=3 SV=1
Length = 451
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 120/300 (40%), Positives = 200/300 (66%), Gaps = 4/300 (1%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D R++L+ G+ +LL +EE +L +I DLL LEEL +S GREP EWA +
Sbjct: 141 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLYLEELAAQFESDNGREPDKKEWAALVEM 200
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
+ +L G R++EK++++NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF
Sbjct: 201 PLIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 260
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
+ G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + K+ QE +PT+
Sbjct: 261 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTE 320
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQE-ITADTSIESPDSSVSKEL 493
E++A + ++ +K+ + A++P+S++ + ++++ + I AD IE+P+ V+K L
Sbjct: 321 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEAD--IENPEQDVAKNL 378
Query: 494 MRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
+R + +L+TL P+ER ++RLR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 379 LREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLR 438
>Q3AWQ6_SYNS9 (tr|Q3AWQ6) RNA polymerase sigma factor OS=Synechococcus sp.
(strain CC9902) GN=Syncc9902_1678 PE=3 SV=1
Length = 451
Score = 238 bits (607), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 120/300 (40%), Positives = 200/300 (66%), Gaps = 4/300 (1%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D R++L+ G+ +LL +EE +L +I DLL LEEL +S GREP EWA +
Sbjct: 141 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLYLEELAAQFESDNGREPDKKEWAALVEM 200
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
+ +L G R++EK++++NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF
Sbjct: 201 PLIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 260
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
+ G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + K+ QE +PT+
Sbjct: 261 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTE 320
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQE-ITADTSIESPDSSVSKEL 493
E++A + ++ +K+ + A++P+S++ + ++++ + I AD IE+P+ V+K L
Sbjct: 321 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEAD--IENPEQDVAKNL 378
Query: 494 MRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
+R + +L+TL P+ER ++RLR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 379 LREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLR 438
>C6SYT0_SOYBN (tr|C6SYT0) Putative uncharacterized protein (Fragment) OS=Glycine
max PE=2 SV=1
Length = 196
Score = 238 bits (606), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 118/175 (67%), Positives = 140/175 (80%), Gaps = 2/175 (1%)
Query: 1 MESARTIFCASPPFPPRTHH-WNTLPSSSYTSVLMFREQAAPTVSSRSTSVSAQKFPTSV 59
ME +RT+FC+SPPFPPRTHH WNTLP SS TSVLM REQA+PTV+S S++ SAQ FP SV
Sbjct: 1 MEFSRTMFCSSPPFPPRTHHPWNTLPLSSSTSVLMLREQASPTVASWSSNFSAQNFPASV 60
Query: 60 LLQEQRDEQRPLLHVSKEDKTCQAVLNARQVDMSLVHEENNIGKVDQVVDDFRQHLHLWP 119
LLQEQRDE RPLLH+SKEDKT QA+ + RQ+D +VHEENN DQVV DFR+HLH WP
Sbjct: 61 LLQEQRDEYRPLLHMSKEDKTSQAMFSTRQMDTVMVHEENNTENADQVVLDFRKHLHYWP 120
Query: 120 HLQNLLTSSETGEVDASSTLQHVTVA-ERPANDVPCNAISLSRQALSPSKHEASV 173
HLQNLL SS+TGE+ ASSTLQ V+ +R N V CN +SL+++ALS SK +SV
Sbjct: 121 HLQNLLASSQTGEISASSTLQQVSSDLDRHTNGVQCNRVSLAKKALSTSKQGSSV 175
>Q10UV2_TRIEI (tr|Q10UV2) RNA polymerase sigma factor OS=Trichodesmium erythraeum
(strain IMS101) GN=Tery_5068 PE=3 SV=1
Length = 386
Score = 237 bits (605), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 115/299 (38%), Positives = 201/299 (67%), Gaps = 2/299 (0%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D RL+L+ G+ +LL +EE +L +I DLL+LE ++ L REP ++EWA +
Sbjct: 76 DSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIREELIYHLDREPQVSEWANAVDM 135
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
+ + +L G R++EK++++NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF
Sbjct: 136 ELPKFKRRLILGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 195
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
+ G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + KL QE +PT+
Sbjct: 196 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTE 255
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELM 494
E++A + ++ +K+ + A++P+S++ + ++++ + ++ E+P+ VSK L+
Sbjct: 256 EEIATSMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDEVSKNLL 314
Query: 495 RRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
R + ++L++L P+ER ++RLR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 315 REDLESVLNSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 373
>K9X1I3_9NOST (tr|K9X1I3) RNA polymerase sigma factor OS=Cylindrospermum stagnale
PCC 7417 GN=Cylst_3438 PE=3 SV=1
Length = 390
Score = 237 bits (605), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 116/299 (38%), Positives = 200/299 (66%), Gaps = 2/299 (0%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D RL+L+ G+ +LL +EE +L +I DLL+LE ++ L + R+P +EWA L
Sbjct: 80 DSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRERLSERLERDPKDSEWAAEVQL 139
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
A + +L G R+++K++++NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF
Sbjct: 140 PLPAFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 199
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
+ G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + KL QE +PT+
Sbjct: 200 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTE 259
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELM 494
E++A R+ ++ +K+ + A++P+S++ + ++++ + ++ E+P+ VSK L+
Sbjct: 260 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKNLL 318
Query: 495 RRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
R + +L +L P+ER ++RLR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 319 REDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 377
>D0CLH5_9SYNE (tr|D0CLH5) RNA polymerase sigma factor OS=Synechococcus sp. WH
8109 GN=SH8109_2432 PE=3 SV=1
Length = 458
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 120/300 (40%), Positives = 200/300 (66%), Gaps = 4/300 (1%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D R++L+ G+ +LL +EE +L +I DLL LEEL +S GREP EWA +
Sbjct: 148 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLYLEELAAQFESDNGREPDNKEWAALVEM 207
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
+ +L G R++EK++++NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF
Sbjct: 208 PLIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 267
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
+ G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + K+ QE +PT+
Sbjct: 268 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTE 327
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQE-ITADTSIESPDSSVSKEL 493
E++A + ++ +K+ + A++P+S++ + ++++ + I AD IE+P+ V+K L
Sbjct: 328 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEAD--IENPEQDVAKNL 385
Query: 494 MRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
+R + +L+TL P+ER ++RLR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 386 LREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLR 445
>Q3ALS7_SYNSC (tr|Q3ALS7) RNA polymerase sigma factor OS=Synechococcus sp.
(strain CC9605) GN=Syncc9605_0681 PE=3 SV=1
Length = 435
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 120/300 (40%), Positives = 200/300 (66%), Gaps = 4/300 (1%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D R++L+ G+ +LL +EE +L +I DLL LEEL +S GREP EWA +
Sbjct: 125 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLYLEELAAQFESDNGREPDNKEWAALVEM 184
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
+ +L G R++EK++++NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF
Sbjct: 185 PLIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 244
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
+ G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + K+ QE +PT+
Sbjct: 245 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTE 304
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQE-ITADTSIESPDSSVSKEL 493
E++A + ++ +K+ + A++P+S++ + ++++ + I AD IE+P+ V+K L
Sbjct: 305 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEAD--IENPEQDVAKNL 362
Query: 494 MRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
+R + +L+TL P+ER ++RLR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 363 LREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLR 422
>K9YRT3_DACSA (tr|K9YRT3) RNA polymerase sigma factor OS=Dactylococcopsis salina
PCC 8305 GN=Dacsa_0937 PE=3 SV=1
Length = 388
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 123/300 (41%), Positives = 202/300 (67%), Gaps = 4/300 (1%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D RL+L+ G+ +LL +EE +L +I DL +LE +T L++ G EPT EWAE G
Sbjct: 77 DSIRLYLQEIGRIRLLRADEEIELARKIADLSELERTRTELEATIGCEPTDEEWAEEVGQ 136
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
+ +L G R++EK++++NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF
Sbjct: 137 ALPKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 196
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
+ G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + K+ QE +PT+
Sbjct: 197 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQELARKPTE 256
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQE-ITADTSIESPDSSVSKEL 493
E++A R+ ++ +K+ + A++P+S++ + ++++ + I AD E+P+ VSK L
Sbjct: 257 EEIAERMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADG--ETPEDEVSKSL 314
Query: 494 MRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
+R + ++L TL P+ER ++RLR+G EDG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 315 LREDLEDVLDTLSPRERDVLRLRYGLEDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 374
>K9Z8E6_CYAAP (tr|K9Z8E6) RNA polymerase sigma factor OS=Cyanobacterium aponinum
(strain PCC 10605) GN=Cyan10605_3382 PE=3 SV=1
Length = 386
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 118/301 (39%), Positives = 201/301 (66%), Gaps = 5/301 (1%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D R++L+ G+ +LL EEE +L QI DLL LE ++++L GR PT EWA + +
Sbjct: 75 DSIRVYLQEIGRIRLLRAEEEIELARQIADLLDLEYIRSTLIEHLGRVPTDEEWAIASDM 134
Query: 315 -KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKF 373
R +L G ++++K++++NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF
Sbjct: 135 PNMRQFNRRLHIGRKAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 194
Query: 374 KPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPT 433
+ G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + K+ Q+ +PT
Sbjct: 195 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKMLSQKMGRKPT 254
Query: 434 KEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQE-ITADTSIESPDSSVSKE 492
+E++A + ++ +K+ + A++P+S++ + ++++ + I AD E+P+ VSK
Sbjct: 255 EEEIAEDMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADG--ETPEDEVSKN 312
Query: 493 LMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKL 552
L+R + N+L +L P+ER ++RLR+G +DG K+L E+G+IF +++ER+RQ+E +A KL
Sbjct: 313 LLREDLENVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKL 372
Query: 553 K 553
+
Sbjct: 373 R 373
>L8L5U0_9SYNC (tr|L8L5U0) RNA polymerase sigma factor OS=Synechocystis sp. PCC
7509 GN=Syn7509DRAFT_00044800 PE=3 SV=1
Length = 386
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 114/299 (38%), Positives = 200/299 (66%), Gaps = 2/299 (0%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D RL+L+ G+ +LL +EE +L +I +LL++E ++ L + R+P +EWAE L
Sbjct: 76 DSIRLYLQEIGRIRLLRADEEIELARKIAELLQMERVREQLCDRLDRDPHDSEWAEAVEL 135
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
+ + +L G R+++K++++NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF
Sbjct: 136 PINSFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 195
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
+ G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + KL QE +PT+
Sbjct: 196 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTE 255
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELM 494
E++A R+ ++ +K+ + A++P+S++ + ++++ + ++ E+P+ VSK L+
Sbjct: 256 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKNLL 314
Query: 495 RRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
R + +L L P+ER ++RLR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 315 REDLEKVLDGLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 373
>B0CDC4_ACAM1 (tr|B0CDC4) RNA polymerase sigma factor OS=Acaryochloris marina
(strain MBIC 11017) GN=rpoD PE=3 SV=1
Length = 371
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 115/299 (38%), Positives = 198/299 (66%), Gaps = 2/299 (0%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D RL+L+ G+ +LL +EE +L +I DLL+LE + L + REP + EWA +
Sbjct: 61 DSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIYDDLFDRLEREPQLQEWALEVDM 120
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
+ +L G R+++K++++NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF
Sbjct: 121 PLNRFRHRLHAGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 180
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
+ G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + KL QE +PT+
Sbjct: 181 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTE 240
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELM 494
E++A R+ ++ +K+ + A++P+S++ + ++++ + ++ E+P+ VSK L+
Sbjct: 241 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKSLL 299
Query: 495 RRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
R + +L TL P+ER +++LR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 300 REDLETVLDTLSPRERDVLKLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 358
>A4CRY9_SYNPV (tr|A4CRY9) RNA polymerase sigma factor OS=Synechococcus sp.
(strain WH7805) GN=WH7805_13938 PE=3 SV=1
Length = 447
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 118/300 (39%), Positives = 199/300 (66%), Gaps = 4/300 (1%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D R++L+ G+ +LL +EE +L +I DLL LEEL +S G+ P EWA +
Sbjct: 137 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAAQFESDNGKLPDTKEWAALVEM 196
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
+ +L G R++EK++++NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF
Sbjct: 197 PVIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 256
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
+ G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + K+ QE +PT+
Sbjct: 257 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTE 316
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQE-ITADTSIESPDSSVSKEL 493
E++A + ++ +K+ + A++P+S++ + ++++ + I AD IE+P+ V+K L
Sbjct: 317 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEAD--IENPEQDVAKNL 374
Query: 494 MRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
+R + +L+TL P+ER ++RLR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 375 LREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLR 434
>B8HPM3_CYAP4 (tr|B8HPM3) RNA polymerase sigma factor OS=Cyanothece sp. (strain
PCC 7425 / ATCC 29141) GN=Cyan7425_1514 PE=3 SV=1
Length = 378
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 114/299 (38%), Positives = 200/299 (66%), Gaps = 2/299 (0%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D RL+L+ G+ +LL +EE +L +I DLL+LE ++ L + REP EWA +
Sbjct: 68 DSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIREQLYDKLDREPQDQEWAGEVDM 127
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
++ + +L G R+++K++++NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF
Sbjct: 128 PLQSFRHRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 187
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
+ G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + KL QE +PT+
Sbjct: 188 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTE 247
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELM 494
E++A R+ ++ +K+ + A++P+S++ + ++++ + ++ E+P+ VSK L+
Sbjct: 248 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKNLL 306
Query: 495 RRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
R + +L TL P+ER +++LR+G +DG K+L E+G++F +++ER+RQ+E +A KL+
Sbjct: 307 REDLETVLCTLSPRERDVLKLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALRKLR 365
>M0TES6_MUSAM (tr|M0TES6) Uncharacterized protein OS=Musa acuminata subsp.
malaccensis PE=4 SV=1
Length = 548
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 127/331 (38%), Positives = 195/331 (58%), Gaps = 12/331 (3%)
Query: 245 KRKINEAFDQNDPQRLFLR--SPGKKLLPIEEESQLIVQIQ---------DLLKLEELKT 293
KR + D +DP +LR + +LL EE +L IQ DLLKLE L+
Sbjct: 216 KRSTLQEIDYSDPLH-YLRGTTSTSRLLTAAEEVELSEGIQTYSKILFNGDLLKLERLQQ 274
Query: 294 SLQSQFGREPTMAEWAEGAGLKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGL 353
L + G +PT A+WA AG+ + L+ +L G ++K+I +N+R+V+ +AK YQ G+
Sbjct: 275 DLTERNGCQPTFAQWAAAAGIDQKVLRKRLNYGTFCKDKMITSNIRLVISIAKNYQHAGM 334
Query: 354 SLQDLLQEGSMGLLKSVKKFKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQ 413
+LQDL+QEG GL+K +KF G +F +YA+WWIKQA+RK++ SRTIRLP +
Sbjct: 335 NLQDLVQEGCRGLIKGAEKFDASKGFKFSTYAHWWIKQAVRKSLSEQSRTIRLPFHMVEA 394
Query: 414 LGKILEAKKLYIQEGNLRPTKEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTF 473
++ EAKK E P E++A G+S + ++++ + P S+ Q + +Q
Sbjct: 395 TYRVREAKKQLYSENGRHPDHEEVAEASGLSMKRFAAVMLTPKAPRSLDQKIGINQTLKP 454
Query: 474 QEITADTSIESPDSSVSKELMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEI 533
E+ AD E+ + + K+ MR + +L TL P+E+R++R RFG EDG K+L E+GE+
Sbjct: 455 SEVIADPDAETSEDILIKQFMREDLNKVLDTLNPREKRVVRWRFGLEDGRMKTLQEIGEL 514
Query: 534 FGLSKERVRQLENRAFYKLKKCLASQGLDAY 564
G+S+ER+RQ+E AF KLK ++ L Y
Sbjct: 515 MGVSRERIRQIEFCAFRKLKSKKRTKNLQQY 545
>A2C0V5_PROM1 (tr|A2C0V5) RNA polymerase sigma factor OS=Prochlorococcus marinus
(strain NATL1A) GN=NATL1_05531 PE=3 SV=1
Length = 420
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 118/300 (39%), Positives = 202/300 (67%), Gaps = 4/300 (1%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D R++L+ G+ +LL +EE +L +I DLL+LEE +S+ G P++ EWA A +
Sbjct: 108 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEEEAAQFESENGHFPSVKEWAVLADM 167
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
+ +L G R++EK++++NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF
Sbjct: 168 PLTRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 227
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
+ G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + K+ QE +PT+
Sbjct: 228 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTE 287
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQE-ITADTSIESPDSSVSKEL 493
E++A + ++ +K+ + A++P+S++ + ++++ + I AD IE+P+ V+K L
Sbjct: 288 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEAD--IENPEQDVAKTL 345
Query: 494 MRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
+R + +L+TL P+ER ++RLR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 346 LREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLR 405
>Q46GS6_PROMT (tr|Q46GS6) RNA polymerase sigma factor OS=Prochlorococcus marinus
(strain NATL2A) GN=PMN2A_1829 PE=3 SV=1
Length = 420
Score = 235 bits (600), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 118/300 (39%), Positives = 202/300 (67%), Gaps = 4/300 (1%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D R++L+ G+ +LL +EE +L +I DLL+LEE +S+ G P++ EWA A +
Sbjct: 108 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEEEAAQFESENGHFPSVKEWAVLADM 167
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
+ +L G R++EK++++NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF
Sbjct: 168 PLARFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 227
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
+ G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + K+ QE +PT+
Sbjct: 228 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTE 287
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQE-ITADTSIESPDSSVSKEL 493
E++A + ++ +K+ + A++P+S++ + ++++ + I AD IE+P+ V+K L
Sbjct: 288 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEAD--IENPEQDVAKTL 345
Query: 494 MRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
+R + +L+TL P+ER ++RLR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 346 LREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLR 405
>G4FIM1_9SYNE (tr|G4FIM1) RNA polymerase sigma factor OS=Synechococcus sp. WH
8016 GN=Syn8016DRAFT_1273 PE=3 SV=1
Length = 443
Score = 235 bits (599), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 118/300 (39%), Positives = 199/300 (66%), Gaps = 4/300 (1%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D R++L+ G+ +LL +EE +L +I DLL LEEL +S G+ P EWA +
Sbjct: 133 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAAQFESDNGKLPDTKEWAALVEM 192
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
+ +L G R++EK++++NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF
Sbjct: 193 PVIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 252
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
+ G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + K+ QE +PT+
Sbjct: 253 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTE 312
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQE-ITADTSIESPDSSVSKEL 493
E++A + ++ +K+ + A++P+S++ + ++++ + I AD IE+P+ V+K L
Sbjct: 313 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEAD--IENPEQDVAKNL 370
Query: 494 MRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
+R + +L+TL P+ER ++RLR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 371 LREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLR 430
>K9YJV2_CYASC (tr|K9YJV2) RNA polymerase sigma factor OS=Cyanobacterium stanieri
(strain ATCC 29140 / PCC 7202) GN=Cyast_1251 PE=3 SV=1
Length = 391
Score = 235 bits (599), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 118/301 (39%), Positives = 198/301 (65%), Gaps = 5/301 (1%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D R++L+ G+ +LL EEE +L QI DLL LE ++ + GR PT EWA +
Sbjct: 80 DSIRVYLQEIGRIRLLRAEEEIELARQIADLLDLEYIRATQIEHLGRIPTDEEWAIACDI 139
Query: 315 -KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKF 373
R +L G R+++K++++NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF
Sbjct: 140 PNMRQFNRRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 199
Query: 374 KPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPT 433
+ G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + K+ Q+ +PT
Sbjct: 200 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKMLSQKMGRKPT 259
Query: 434 KEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQE-ITADTSIESPDSSVSKE 492
+E++A + ++ +K+ + A++P+S++ + ++++ + I AD E+P+ VSK
Sbjct: 260 EEEIAEDMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADG--ETPEDEVSKN 317
Query: 493 LMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKL 552
L+R + N+L +L P+ER ++RLR+G +DG K+L E+G+IF +++ER+RQ+E +A KL
Sbjct: 318 LLREDLENVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKL 377
Query: 553 K 553
+
Sbjct: 378 R 378
>M0TIC0_MUSAM (tr|M0TIC0) Uncharacterized protein OS=Musa acuminata subsp.
malaccensis PE=4 SV=1
Length = 548
Score = 234 bits (598), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 124/311 (39%), Positives = 193/311 (62%), Gaps = 3/311 (0%)
Query: 245 KRKINEAFDQNDPQRLFLR--SPGKKLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGRE 302
KR + D +DP R +LR + KLL EE +L IQDLLKLE L+ L + G +
Sbjct: 225 KRSSFQEVDYSDPLR-YLRGTTSTSKLLSAVEELELSKGIQDLLKLERLREELVGRNGGQ 283
Query: 303 PTMAEWAEGAGLKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEG 362
PT A+WA AG+ + L+ +L G ++K+IK+N+R+V+ +AK YQ GLSLQDL+QEG
Sbjct: 284 PTFAQWATAAGIDQKTLRKRLNDGTFCKDKMIKSNIRLVISIAKNYQNAGLSLQDLVQEG 343
Query: 363 SMGLLKSVKKFKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKK 422
GL+K +KF G +F +YA+WWIKQA+R+++ SRTIRLP + ++ EAKK
Sbjct: 344 YRGLVKGAEKFDASKGFKFSTYAHWWIKQAVRRSLSEQSRTIRLPFHMVEATYRVREAKK 403
Query: 423 LYIQEGNLRPTKEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSI 482
E P ++A G+S ++ ++L + P S+ Q + +QN E+ AD
Sbjct: 404 QLYSENGRHPDYVEVAVATGLSMKRVETVLLTPKAPRSLDQKIGINQNLKPSEVMADPEA 463
Query: 483 ESPDSSVSKELMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVR 542
E+ + + K+ M+ + +L TL P+E++++R RFG ++ K+L E+G++ G+S+ER+R
Sbjct: 464 ETSEEILIKKFMKADLNKVLDTLNPREKQVLRWRFGLDNERIKTLQEIGKLMGVSRERIR 523
Query: 543 QLENRAFYKLK 553
Q+E+ AF KLK
Sbjct: 524 QIESCAFRKLK 534
>Q2JT33_SYNJA (tr|Q2JT33) RNA polymerase sigma factor OS=Synechococcus sp.
(strain JA-3-3Ab) GN=CYA_2037 PE=3 SV=1
Length = 364
Score = 234 bits (597), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 132/310 (42%), Positives = 195/310 (62%), Gaps = 13/310 (4%)
Query: 255 NDPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWA---- 309
D RL+L+ G+ LL +EE L ++QD +KL +++ LQ + GREPT+AEWA
Sbjct: 43 TDLVRLYLQEIGRVPLLGRDEEVALAQRVQDYMKLLDVRLRLQKELGREPTLAEWAARAN 102
Query: 310 ---EGAGLKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGL 366
E A L LQ R G R++E +IKANLR+V+ VAK YQ RGL L DL+QEG++GL
Sbjct: 103 QYPEWANLTPEKLQQIQRIGKRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGL 162
Query: 367 LKSVKKFKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQ 426
++V+KF P+ G RF +YAYWWI+Q I +AI SRTIRLP + +L KI +A++ Q
Sbjct: 163 ERAVEKFDPKKGYRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKLSQ 222
Query: 427 EGNLRPTKEDLARRVGISEDKISSLLYVARIP--MSMQQTVWTDQNTTFQEITADTSIES 484
E PT ED+A + ++ ++ LL R+P +S++ V D++T ++ I S
Sbjct: 223 EKGRTPTIEDIASELEMTVPQVRELL--VRVPRSVSLETKVGKDKDTELGDLLETDDI-S 279
Query: 485 PDSSVSKELMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQL 544
P+ ++ +E + R + LL+ L +ER +IR+RFG DG SL+E+G LS+ERVRQ+
Sbjct: 280 PEETMMREALHRDLQQLLADLTSRERDVIRMRFGLGDGRTYSLAEIGRALDLSRERVRQI 339
Query: 545 ENRAFYKLKK 554
E +A KL++
Sbjct: 340 EAKALQKLRQ 349
>A5GJC2_SYNPW (tr|A5GJC2) RNA polymerase sigma factor OS=Synechococcus sp.
(strain WH7803) GN=rpoD PE=3 SV=1
Length = 450
Score = 234 bits (597), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 118/300 (39%), Positives = 199/300 (66%), Gaps = 4/300 (1%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D R++L+ G+ +LL +EE +L +I DLL LEEL +S G+ P EWA +
Sbjct: 140 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAAQFESDNGKLPDTKEWAALVEM 199
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
+ +L G R++EK++++NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF
Sbjct: 200 PVIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 259
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
+ G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + K+ QE +PT+
Sbjct: 260 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTE 319
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQE-ITADTSIESPDSSVSKEL 493
E++A + ++ +K+ + A++P+S++ + ++++ + I AD IE+P+ V+K L
Sbjct: 320 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEAD--IENPEQDVAKNL 377
Query: 494 MRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
+R + +L+TL P+ER ++RLR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 378 LREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLR 437
>B5ILG7_9CHRO (tr|B5ILG7) RNA polymerase sigma factor OS=Cyanobium sp. PCC 7001
GN=rpoD_2 PE=3 SV=1
Length = 503
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 117/300 (39%), Positives = 198/300 (66%), Gaps = 4/300 (1%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D R++L+ G+ +LL +EE +L +I DLL+LEEL ++ G P EWA +
Sbjct: 193 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELAAQFEADHGHYPDNKEWAALVDM 252
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
+ +L G R++EK++++NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF
Sbjct: 253 PLIKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 312
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
+ G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + K QE +PT+
Sbjct: 313 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKTLSQEFGRKPTE 372
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQE-ITADTSIESPDSSVSKEL 493
E++A + ++ +K+ + A++P+S++ + ++++ + I AD IE+P+ V+K L
Sbjct: 373 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEAD--IENPEQDVAKNL 430
Query: 494 MRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
+R + +L+TL P+ER ++RLR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 431 LREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLR 490
>A5GSD3_SYNR3 (tr|A5GSD3) RNA polymerase sigma factor OS=Synechococcus sp.
(strain RCC307) GN=rpoD PE=3 SV=1
Length = 401
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 118/300 (39%), Positives = 198/300 (66%), Gaps = 4/300 (1%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D R++L+ G+ +LL +EE +L +I DLL LEEL + G+ P EWA +
Sbjct: 91 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELADQYEEDHGKYPDNREWAVLVDM 150
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
+ +L G R++EK++++NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF
Sbjct: 151 PPIKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 210
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
+ G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + K+ QE +PT+
Sbjct: 211 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTE 270
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQE-ITADTSIESPDSSVSKEL 493
E++A + ++ +K+ + A++P+S++ + ++++ + I AD IE+PD V+K L
Sbjct: 271 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEAD--IENPDQDVAKNL 328
Query: 494 MRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
+R + +L+TL P+ER ++RLR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 329 LREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALLKLR 388
>L8LPU5_9CHRO (tr|L8LPU5) RNA polymerase sigma factor OS=Gloeocapsa sp. PCC 73106
GN=GLO73106DRAFT_00034750 PE=3 SV=1
Length = 376
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 117/300 (39%), Positives = 200/300 (66%), Gaps = 4/300 (1%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D R++L+ G+ +LL EEE +L +I DLL+LE+ + L + R P EWA +
Sbjct: 66 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLELEQKREKLWQELKRIPNDREWAASVEM 125
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
+ A + +L G R++EK++++NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF
Sbjct: 126 ELPAFRRRLYLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 185
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
+ G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + K+ QE +PT+
Sbjct: 186 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMGRKPTE 245
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQE-ITADTSIESPDSSVSKEL 493
E++A + ++ +K+ + A++P+S++ + ++++ + I AD E+P+ VSK L
Sbjct: 246 EEIATHMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADG--ETPEDDVSKNL 303
Query: 494 MRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
+R + ++L +L P+ER ++RLR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 304 LREDLEHVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLR 363
>L8M7W7_9CYAN (tr|L8M7W7) RNA polymerase sigma factor OS=Xenococcus sp. PCC 7305
GN=Xen7305DRAFT_00040560 PE=3 SV=1
Length = 380
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 118/300 (39%), Positives = 204/300 (68%), Gaps = 4/300 (1%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D R++L+ G+ +LL EEE +L +I DLL+LE ++ ++ + RE + AEW + +
Sbjct: 70 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERIRERIEDELDREISDAEWGKEVDM 129
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
+ R + +L G R+++K++++NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF
Sbjct: 130 ELRPFRRRLFLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 189
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
+ G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + K+ QE +PT+
Sbjct: 190 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMGRKPTE 249
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQE-ITADTSIESPDSSVSKEL 493
E++A R+ ++ +K+ + A++P+S++ + ++++ + I AD E+P+ VSK L
Sbjct: 250 EEIAERMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADG--ETPEDQVSKSL 307
Query: 494 MRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
+R + N+L TL P+ER ++RLR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 308 LREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 367
>Q0I8I7_SYNS3 (tr|Q0I8I7) RNA polymerase sigma factor OS=Synechococcus sp.
(strain CC9311) GN=rpoD PE=3 SV=1
Length = 440
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 118/300 (39%), Positives = 199/300 (66%), Gaps = 4/300 (1%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D R++L+ G+ +LL +EE +L +I DLL LEEL +S G+ P EWA +
Sbjct: 130 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAAQFESDNGKLPETKEWAALVEM 189
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
+ +L G R++EK++++NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF
Sbjct: 190 PVIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 249
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
+ G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + K+ QE +PT+
Sbjct: 250 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTE 309
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQE-ITADTSIESPDSSVSKEL 493
E++A + ++ +K+ + A++P+S++ + ++++ + I AD IE+P+ V+K L
Sbjct: 310 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEAD--IENPEQDVAKNL 367
Query: 494 MRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
+R + +L+TL P+ER ++RLR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 368 LREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLR 427
>Q2JIA4_SYNJB (tr|Q2JIA4) RNA polymerase sigma factor OS=Synechococcus sp.
(strain JA-2-3B'a(2-13)) GN=CYB_2734 PE=3 SV=1
Length = 366
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 132/310 (42%), Positives = 194/310 (62%), Gaps = 13/310 (4%)
Query: 255 NDPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWA---- 309
D RL+L+ G+ LL +EE L ++QD +KL +L+ LQ + GR+PT+AEW
Sbjct: 45 TDLVRLYLQEIGRVPLLGRDEEVALAQKVQDYMKLLDLRLRLQKELGRDPTLAEWVAKAN 104
Query: 310 ---EGAGLKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGL 366
E A L LQ R G R++E +IKANLR+V+ VAK YQ RGL L DL+QEG++GL
Sbjct: 105 QYPEWAQLTPEKLQQIQRIGKRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGL 164
Query: 367 LKSVKKFKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQ 426
++V+KF P+ G RF +YAYWWI+Q I +AI SRTIRLP + +L KI +A++ Q
Sbjct: 165 ERAVEKFDPKKGYRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKLSQ 224
Query: 427 EGNLRPTKEDLARRVGISEDKISSLLYVARIP--MSMQQTVWTDQNTTFQEITADTSIES 484
E PT ED+A + ++ ++ LL R+P +S++ V D++T ++ I S
Sbjct: 225 EKGRTPTIEDIASELEMTPPQVRELL--VRVPRSVSLETKVGKDKDTELGDLLETDDI-S 281
Query: 485 PDSSVSKELMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQL 544
P+ ++ +E + R + LLS L +ER +IR+RFG DG SL+E+G LS+ERVRQ+
Sbjct: 282 PEETMMREALHRDLQQLLSDLTSRERDVIRMRFGLGDGRTYSLAEIGRALDLSRERVRQI 341
Query: 545 ENRAFYKLKK 554
E +A KL++
Sbjct: 342 EAKALQKLRQ 351
>Q7V698_PROMM (tr|Q7V698) RNA polymerase sigma factor OS=Prochlorococcus marinus
(strain MIT 9313) GN=sigA PE=3 SV=1
Length = 461
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 117/300 (39%), Positives = 197/300 (65%), Gaps = 4/300 (1%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D R++L+ G+ +LL +EE +L +I DLL LEEL S G P EWA +
Sbjct: 151 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAEQFNSDHGHYPNNKEWASLVEM 210
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
+ +L G R++EK++++NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF
Sbjct: 211 PNIKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 270
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
+ G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + K+ QE +PT+
Sbjct: 271 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTE 330
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQE-ITADTSIESPDSSVSKEL 493
E++A + ++ +K+ + A++P+S++ + ++++ + I +DT E+P+ V+K L
Sbjct: 331 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDT--ENPEQDVAKNL 388
Query: 494 MRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
+R + +L+TL P+ER ++RLR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 389 LREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFEVTRERIRQIEAKALRKLR 448
>K7W4G2_9NOST (tr|K7W4G2) RNA polymerase sigma factor OS=Anabaena sp. 90 GN=sigA
PE=3 SV=1
Length = 391
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 114/299 (38%), Positives = 198/299 (66%), Gaps = 2/299 (0%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D RL+L+ G+ +LL +EE +L +I +LL+LE + L + R+P +EWA L
Sbjct: 81 DSIRLYLQEIGRIRLLRADEEIELARKIAELLELERARERLCERLERDPRDSEWAAEVSL 140
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
+ +L G R+++K++++NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF
Sbjct: 141 PLPTFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 200
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
+ G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + KL QE +PT+
Sbjct: 201 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTE 260
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELM 494
E++A R+ ++ +K+ + A++P+S++ + ++++ + ++ E+P+ VSK L+
Sbjct: 261 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKNLL 319
Query: 495 RRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
R + +L +L P+ER ++RLR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 320 REDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 378
>A0YTZ3_LYNSP (tr|A0YTZ3) RNA polymerase sigma factor OS=Lyngbya sp. (strain PCC
8106) GN=L8106_10432 PE=3 SV=1
Length = 391
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 115/299 (38%), Positives = 197/299 (65%), Gaps = 2/299 (0%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D RL+L+ G+ +LL +EE +L +I DLL+LE ++ L EP EWA +
Sbjct: 81 DSIRLYLQEIGRIRLLRADEEIELARRIADLLELERIREKLVEHNHCEPEDREWASAVDM 140
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
+ +L G R+++K++++NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF
Sbjct: 141 ALPEFRRRLYLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 200
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
+ G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + KL QE +PT+
Sbjct: 201 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTE 260
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELM 494
E++A R+ ++ +K+ + A++P+S++ + ++++ + ++ E+P+ VSK L+
Sbjct: 261 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKNLL 319
Query: 495 RRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
R + ++L TL P+ER ++RLR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 320 REDLESVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 378
>Q5N3Q1_SYNP6 (tr|Q5N3Q1) RNA polymerase sigma factor OS=Synechococcus sp.
(strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rpoD1
PE=3 SV=1
Length = 399
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 120/300 (40%), Positives = 199/300 (66%), Gaps = 4/300 (1%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D RL+L+ G+ +LL +EE +L QI DLL LE ++ L Q R P+ AEWA
Sbjct: 89 DSIRLYLQEIGRIRLLRADEEIELARQIADLLALERIRDELLEQLDRLPSDAEWAAAVDS 148
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
+ +L G R+++K++++NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF
Sbjct: 149 PLDEFRRRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 208
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
+ G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + KL QE +PT+
Sbjct: 209 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTE 268
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQE-ITADTSIESPDSSVSKEL 493
E++A R+ ++ +K+ + A++P+S++ + ++++ + I AD E+P+ V+K L
Sbjct: 269 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADG--ETPEDEVAKNL 326
Query: 494 MRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
+R + +LSTL P+ER ++RLR+G +DG K+L E+G++F +++ER+RQ+E +A KL+
Sbjct: 327 LREDLEGVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALRKLR 386
>A2C7M0_PROM3 (tr|A2C7M0) RNA polymerase sigma factor OS=Prochlorococcus marinus
(strain MIT 9303) GN=P9303_07291 PE=3 SV=1
Length = 444
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 117/300 (39%), Positives = 197/300 (65%), Gaps = 4/300 (1%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D R++L+ G+ +LL +EE +L +I DLL LEEL S G P EWA +
Sbjct: 134 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAEQFNSDHGHYPNNKEWAALVEM 193
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
+ +L G R++EK++++NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF
Sbjct: 194 PNIKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 253
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
+ G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + K+ QE +PT+
Sbjct: 254 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTE 313
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQE-ITADTSIESPDSSVSKEL 493
E++A + ++ +K+ + A++P+S++ + ++++ + I +DT E+P+ V+K L
Sbjct: 314 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDT--ENPEQDVAKNL 371
Query: 494 MRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
+R + +L+TL P+ER ++RLR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 372 LREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFEVTRERIRQIEAKALRKLR 431
>K9SJF8_9CYAN (tr|K9SJF8) RNA polymerase sigma factor OS=Pseudanabaena sp. PCC
7367 GN=Pse7367_1641 PE=3 SV=1
Length = 412
Score = 231 bits (588), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 114/303 (37%), Positives = 201/303 (66%), Gaps = 6/303 (1%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFG----REPTMAEWAE 310
D RL+L+ G+ +LL +EE +L +I DLL+LE+ + L ++ G E + ++WA
Sbjct: 98 DSIRLYLQEIGRIRLLRADEEIELARKIADLLELEQQREELANEMGLDDPEEVSDSDWAV 157
Query: 311 GAGLKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSV 370
+ + +L G R+++K++++NLR+V+ +AK Y RGLS QDL+QEGS+GL+++
Sbjct: 158 KVDMPLPRFRRRLYEGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAA 217
Query: 371 KKFKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNL 430
+KF + G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + KL QE
Sbjct: 218 EKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGR 277
Query: 431 RPTKEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVS 490
+PT+E++A R+ ++ +K+ + A++P+S++ + ++++ + ++ E+PD V+
Sbjct: 278 KPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPDDQVA 336
Query: 491 KELMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFY 550
K L+R + N+L TL P+ER +++LR+G +DG K+L E+G+IF +++ER+RQ+E +A
Sbjct: 337 KNLLREDLENVLGTLSPRERDVLKLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 396
Query: 551 KLK 553
KL+
Sbjct: 397 KLR 399
>H1WE70_9CYAN (tr|H1WE70) RNA polymerase sigma factor OS=Arthrospira sp. PCC 8005
GN=rpoD PE=3 SV=1
Length = 387
Score = 231 bits (588), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 116/299 (38%), Positives = 200/299 (66%), Gaps = 2/299 (0%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D RL+L+ G+ +LL +EE +L +I DLL+LE ++ L + REP EWA +
Sbjct: 77 DSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIREKLIEHYHREPNEKEWANAVDM 136
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
+ + +L G R+++K++++NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF
Sbjct: 137 RLPEFRRRLFLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 196
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
+ G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + KL QE +PT+
Sbjct: 197 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTE 256
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELM 494
E++A R+ ++ +K+ + A++P+S++ + ++++ + ++ E+P+ VSK L+
Sbjct: 257 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKNLL 315
Query: 495 RRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
R + ++L TL P+ER ++RLR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 316 REDLESVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 374
>B5VWQ7_SPIMA (tr|B5VWQ7) RNA polymerase sigma factor OS=Arthrospira maxima
CS-328 GN=AmaxDRAFT_0949 PE=3 SV=1
Length = 387
Score = 231 bits (588), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 116/299 (38%), Positives = 200/299 (66%), Gaps = 2/299 (0%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D RL+L+ G+ +LL +EE +L +I DLL+LE ++ L + REP EWA +
Sbjct: 77 DSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIREKLIEHYHREPNEKEWANAVDM 136
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
+ + +L G R+++K++++NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF
Sbjct: 137 RLPEFRRRLFLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 196
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
+ G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + KL QE +PT+
Sbjct: 197 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTE 256
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELM 494
E++A R+ ++ +K+ + A++P+S++ + ++++ + ++ E+P+ VSK L+
Sbjct: 257 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKNLL 315
Query: 495 RRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
R + ++L TL P+ER ++RLR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 316 REDLESVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 374
>K9EXS2_9CYAN (tr|K9EXS2) RNA polymerase sigma factor OS=Leptolyngbya sp. PCC
7375 GN=Lepto7375DRAFT_3552 PE=3 SV=1
Length = 376
Score = 231 bits (588), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 118/299 (39%), Positives = 199/299 (66%), Gaps = 2/299 (0%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D RL+L+ G+ +LL EEE +L +I DLL+LE ++ L EP A+WA +
Sbjct: 66 DSIRLYLQEIGRIRLLRAEEEIELARKIADLLELERIRDDLSDGMDHEPDDADWAAAVDM 125
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
A + +L G R+++K++++NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF
Sbjct: 126 PLPAFRRRLHLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 185
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
+ G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + KL QE +PT+
Sbjct: 186 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQELGRKPTE 245
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELM 494
E++A R+ ++ +K+ + A++P+S++ + ++++ + ++ E+P+ VSK L+
Sbjct: 246 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDEVSKSLL 304
Query: 495 RRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
R + +LSTL P+ER ++RLR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 305 REDLEGVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 363
>K1X4L7_SPIPL (tr|K1X4L7) RNA polymerase sigma factor OS=Arthrospira platensis C1
GN=SPLC1_S360460 PE=3 SV=1
Length = 372
Score = 231 bits (588), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 116/299 (38%), Positives = 200/299 (66%), Gaps = 2/299 (0%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D RL+L+ G+ +LL +EE +L +I DLL+LE ++ L + REP EWA +
Sbjct: 62 DSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIREKLIEHYHREPNEKEWANAVDM 121
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
+ + +L G R+++K++++NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF
Sbjct: 122 RLPEFRRRLFLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 181
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
+ G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + KL QE +PT+
Sbjct: 182 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTE 241
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELM 494
E++A R+ ++ +K+ + A++P+S++ + ++++ + ++ E+P+ VSK L+
Sbjct: 242 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKNLL 300
Query: 495 RRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
R + ++L TL P+ER ++RLR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 301 REDLESVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 359
>Q31C37_PROM9 (tr|Q31C37) RNA polymerase sigma factor OS=Prochlorococcus marinus
(strain MIT 9312) GN=PMT9312_0497 PE=3 SV=1
Length = 393
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 120/300 (40%), Positives = 204/300 (68%), Gaps = 4/300 (1%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D R++L+ G+ +LL +EE +L +I DLL+LEEL T +S+ G P++ EWAE +
Sbjct: 83 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAELIDM 142
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
+ +L G R++EK++++NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF
Sbjct: 143 PLSKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 202
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
+ G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + K+ QE +P++
Sbjct: 203 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSE 262
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQE-ITADTSIESPDSSVSKEL 493
E++A + ++ +K+ + A++P+S++ + ++++ + I AD IE+P+ VSK L
Sbjct: 263 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEAD--IENPEQDVSKTL 320
Query: 494 MRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
+R + +L+TL P+ER ++RLR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 321 LREDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLR 380
>K6DHZ3_SPIPL (tr|K6DHZ3) RNA polymerase sigma factor OS=Arthrospira platensis
str. Paraca GN=APPUASWS_21888 PE=3 SV=1
Length = 387
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 116/299 (38%), Positives = 200/299 (66%), Gaps = 2/299 (0%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D RL+L+ G+ +LL +EE +L +I DLL+LE ++ L + REP EWA +
Sbjct: 77 DSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIREKLIEHYHREPNEKEWANAVDM 136
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
+ + +L G R+++K++++NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF
Sbjct: 137 RLPEFRRRLFLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 196
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
+ G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + KL QE +PT+
Sbjct: 197 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTE 256
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELM 494
E++A R+ ++ +K+ + A++P+S++ + ++++ + ++ E+P+ VSK L+
Sbjct: 257 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKNLL 315
Query: 495 RRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
R + ++L TL P+ER ++RLR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 316 REDLESVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 374
>D5A0H0_SPIPL (tr|D5A0H0) RNA polymerase sigma factor OS=Arthrospira platensis
NIES-39 GN=sigA PE=3 SV=1
Length = 387
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 116/299 (38%), Positives = 200/299 (66%), Gaps = 2/299 (0%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D RL+L+ G+ +LL +EE +L +I DLL+LE ++ L + REP EWA +
Sbjct: 77 DSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIREKLIEHYHREPNEKEWANAVDM 136
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
+ + +L G R+++K++++NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF
Sbjct: 137 RLPEFRRRLFLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 196
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
+ G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + KL QE +PT+
Sbjct: 197 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTE 256
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELM 494
E++A R+ ++ +K+ + A++P+S++ + ++++ + ++ E+P+ VSK L+
Sbjct: 257 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKNLL 315
Query: 495 RRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
R + ++L TL P+ER ++RLR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 316 REDLESVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 374
>Q7V2I0_PROMP (tr|Q7V2I0) RNA polymerase sigma factor OS=Prochlorococcus marinus
subsp. pastoris (strain CCMP1986 / MED4) GN=sigA PE=3
SV=1
Length = 396
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 120/300 (40%), Positives = 204/300 (68%), Gaps = 4/300 (1%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D R++L+ G+ +LL +EE +L +I DLL+LEEL T +S+ G P++ EWAE +
Sbjct: 86 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAELTDM 145
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
+ +L G R++EK++++NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF
Sbjct: 146 PLSKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 205
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
+ G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + K+ QE +P++
Sbjct: 206 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSE 265
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQE-ITADTSIESPDSSVSKEL 493
E++A + ++ +K+ + A++P+S++ + ++++ + I AD IE+P+ VSK L
Sbjct: 266 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEAD--IENPEQDVSKTL 323
Query: 494 MRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
+R + +L+TL P+ER ++RLR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 324 LREDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLR 383
>A9BEB7_PROM4 (tr|A9BEB7) RNA polymerase sigma factor OS=Prochlorococcus marinus
(strain MIT 9211) GN=P9211_04961 PE=3 SV=1
Length = 425
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 113/299 (37%), Positives = 197/299 (65%), Gaps = 2/299 (0%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D R++L+ G+ +LL +EE +L +I DLL LEE+ +S+ G P+ EWA +
Sbjct: 115 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLNLEEIAIQFESENGHYPSKKEWAALVEM 174
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
+ +L G R++EK++++NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF
Sbjct: 175 PVIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 234
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
+ G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + K+ QE +P++
Sbjct: 235 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSE 294
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELM 494
E++A + ++ +K+ + A++P+S++ + ++++ + S E+P+ V+K L+
Sbjct: 295 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDS-ENPELDVAKTLL 353
Query: 495 RRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
R + +L+TL P+ER ++RLR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 354 REDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLR 412
>A2BVF8_PROM5 (tr|A2BVF8) RNA polymerase sigma factor OS=Prochlorococcus marinus
(strain MIT 9515) GN=P9515_05601 PE=3 SV=1
Length = 397
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 120/300 (40%), Positives = 204/300 (68%), Gaps = 4/300 (1%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D R++L+ G+ +LL +EE +L +I DLL+LEEL T +S+ G P++ EWAE +
Sbjct: 87 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELATQFESEKGHFPSVREWAELIDM 146
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
+ +L G R++EK++++NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF
Sbjct: 147 PLSKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 206
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
+ G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + K+ QE +P++
Sbjct: 207 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSE 266
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQE-ITADTSIESPDSSVSKEL 493
E++A + ++ +K+ + A++P+S++ + ++++ + I AD IE+P+ VSK L
Sbjct: 267 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEAD--IENPEQDVSKTL 324
Query: 494 MRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
+R + +L+TL P+ER ++RLR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 325 LREDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLR 384
>B9P0P2_PROMR (tr|B9P0P2) RNA polymerase sigma factor OS=Prochlorococcus marinus
str. MIT 9202 GN=P9202_111 PE=3 SV=1
Length = 393
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 120/300 (40%), Positives = 204/300 (68%), Gaps = 4/300 (1%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D R++L+ G+ +LL +EE +L +I DLL+LEEL T +S+ G P++ EWAE +
Sbjct: 83 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAELIDM 142
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
+ +L G R++EK++++NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF
Sbjct: 143 PLSKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 202
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
+ G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + K+ QE +P++
Sbjct: 203 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSE 262
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQE-ITADTSIESPDSSVSKEL 493
E++A + ++ +K+ + A++P+S++ + ++++ + I AD IE+P+ VSK L
Sbjct: 263 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEAD--IENPEQDVSKTL 320
Query: 494 MRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
+R + +L+TL P+ER ++RLR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 321 LREDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLR 380
>B1X5Q2_PAUCH (tr|B1X5Q2) RNA polymerase sigma factor OS=Paulinella chromatophora
GN=rpoDI PE=4 SV=1
Length = 460
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 116/300 (38%), Positives = 197/300 (65%), Gaps = 4/300 (1%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D R++L+ G+ +LL +EE +L +I DLL LEEL + + G P EWA +
Sbjct: 150 DSIRVYLQEIGRIRLLRPDEEIELARKISDLLYLEELAGQFEGRKGYYPDNKEWAALVEM 209
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
+ +L G R++ K++++NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF
Sbjct: 210 SLIKFRRRLMLGRRAKAKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 269
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
+ G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + K+ QE +PT+
Sbjct: 270 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTE 329
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQE-ITADTSIESPDSSVSKEL 493
E++A + ++ +K+ + A++P+S++ + ++++ + I AD IE+P+ V+K L
Sbjct: 330 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEAD--IENPEQDVAKNL 387
Query: 494 MRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
+R + +L+TL P+ER ++RLR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 388 LREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLR 447
>R7QDV9_CHOCR (tr|R7QDV9) Stackhouse genomic scaffold, scaffold_226 OS=Chondrus
crispus GN=CHC_T00004323001 PE=4 SV=1
Length = 414
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 122/303 (40%), Positives = 185/303 (61%), Gaps = 5/303 (1%)
Query: 255 NDPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAG 313
+D R +L G+ KLL E E L +I LL+LE + +L+ G EP + EWA A
Sbjct: 97 DDSIRRYLHEIGEVKLLDAESEINLAREIAKLLELERISATLKDANGFEPAIPEWAAAAD 156
Query: 314 LKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKF 373
+ + LR G R++E ++ ANLR+V+ +AK Y RGLS QDL+QEGS+GL++ +KF
Sbjct: 157 MNIEVFRETLRRGLRAKEHMVAANLRLVVSIAKKYLNRGLSFQDLIQEGSIGLIRGAEKF 216
Query: 374 KPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPT 433
G +F +YA WWI+QAI +AI HSR IRLP V + I +A KL E N PT
Sbjct: 217 DGNKGFKFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTIAAIKKATKLLSTEMNRSPT 276
Query: 434 KEDLARRVGISEDKISSLLYVARIPMSMQQTVWTD---QNTTFQEITADTSIESPDSSVS 490
+ ++A R+ IS +K+ L AR +S++ + D N T ++P+ S
Sbjct: 277 ETEIAERLQISIEKLRFLSTSARATISLETPIGRDGKESNATLGSFIVWEG-DTPEESTM 335
Query: 491 KELMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFY 550
K L+R + N+L+TL P+ER ++R+R+GF+DG+ K+L E+G +F +++ER+RQ+E +A
Sbjct: 336 KSLLREDLENVLNTLSPRERDVVRMRYGFDDGKMKTLEEIGCLFAVTRERIRQIEAKALR 395
Query: 551 KLK 553
KL+
Sbjct: 396 KLR 398
>A8G3L2_PROM2 (tr|A8G3L2) RNA polymerase sigma factor OS=Prochlorococcus marinus
(strain MIT 9215) GN=rpoD PE=3 SV=1
Length = 393
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 120/300 (40%), Positives = 204/300 (68%), Gaps = 4/300 (1%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D R++L+ G+ +LL +EE +L +I DLL+LEEL T +S+ G P++ EWAE +
Sbjct: 83 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAELIDM 142
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
+ +L G R++EK++++NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF
Sbjct: 143 PLSKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 202
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
+ G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + K+ QE +P++
Sbjct: 203 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSE 262
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQE-ITADTSIESPDSSVSKEL 493
E++A + ++ +K+ + A++P+S++ + ++++ + I AD IE+P+ VSK L
Sbjct: 263 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEAD--IENPEQDVSKTL 320
Query: 494 MRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
+R + +L+TL P+ER ++RLR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 321 LREDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLR 380
>A2BPX8_PROMS (tr|A2BPX8) RNA polymerase sigma factor OS=Prochlorococcus marinus
(strain AS9601) GN=A9601_05531 PE=3 SV=1
Length = 394
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 120/300 (40%), Positives = 204/300 (68%), Gaps = 4/300 (1%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D R++L+ G+ +LL +EE +L +I DLL+LEEL T +S+ G P++ EWAE +
Sbjct: 84 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAELIDM 143
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
+ +L G R++EK++++NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF
Sbjct: 144 PLAKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 203
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
+ G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + K+ QE +P++
Sbjct: 204 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSE 263
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQE-ITADTSIESPDSSVSKEL 493
E++A + ++ +K+ + A++P+S++ + ++++ + I AD IE+P+ VSK L
Sbjct: 264 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEAD--IENPEQDVSKTL 321
Query: 494 MRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
+R + +L+TL P+ER ++RLR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 322 LREDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLR 381
>A3PBM1_PROM0 (tr|A3PBM1) RNA polymerase sigma factor OS=Prochlorococcus marinus
(strain MIT 9301) GN=P9301_05231 PE=3 SV=1
Length = 394
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 120/300 (40%), Positives = 204/300 (68%), Gaps = 4/300 (1%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D R++L+ G+ +LL +EE +L +I DLL+LEEL T +S+ G P++ EWAE +
Sbjct: 84 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAELIDM 143
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
+ +L G R++EK++++NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF
Sbjct: 144 PLPKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 203
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
+ G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + K+ QE +P++
Sbjct: 204 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSE 263
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQE-ITADTSIESPDSSVSKEL 493
E++A + ++ +K+ + A++P+S++ + ++++ + I AD IE+P+ VSK L
Sbjct: 264 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEAD--IENPEQDVSKTL 321
Query: 494 MRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
+R + +L+TL P+ER ++RLR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 322 LREDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLR 381
>A9RG56_PHYPA (tr|A9RG56) Uncharacterized protein OS=Physcomitrella patens subsp.
patens GN=PHYPADRAFT_113461 PE=4 SV=1
Length = 581
Score = 228 bits (582), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 113/309 (36%), Positives = 191/309 (61%), Gaps = 10/309 (3%)
Query: 255 NDPQRLFLRS-PGKKLLPIEEESQLIVQIQ---------DLLKLEELKTSLQSQFGREPT 304
+DP +LR KLL EE L +IQ LKLE+++ LQ GREPT
Sbjct: 257 SDPICSYLRDVKNSKLLTAFEEVALSRKIQVTTLFRFRQYTLKLEKVRAELQRDMGREPT 316
Query: 305 MAEWAEGAGLKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSM 364
+EW+ G+ +++++ G +++KL+ +NLR+V+ + K YQGRG++L DL+Q GS+
Sbjct: 317 RSEWSLAVGMNQTLFELRIKEGQCAKDKLVNSNLRLVVSIVKNYQGRGMTLPDLIQRGSL 376
Query: 365 GLLKSVKKFKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLY 424
GL++ +KF P++G +F +YA WWI+QA+ ++I SR IRLP +Y + +I +++ +
Sbjct: 377 GLIRGAEKFDPEMGFKFSTYATWWIRQAVTRSITDQSRIIRLPVHIYEVISRINKSRMMI 436
Query: 425 IQEGNLRPTKEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIES 484
++ + E++A VGIS +K+ +L AR+P SM Q + D++ E+ AD S
Sbjct: 437 AEDQGRQARDEEVATAVGISVEKLDFILKSARLPASMDQLIGRDKDLPLWEMVADKGFNS 496
Query: 485 PDSSVSKELMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQL 544
D ++ E++++ + +L TL P ER ++RLRFG +D + +L ++G F +++ER+RQ+
Sbjct: 497 ADDFLTNEVLKQDIDGVLQTLSPTEREVLRLRFGLDDAQSMTLKDIGIFFKVTRERIRQI 556
Query: 545 ENRAFYKLK 553
E RA KL+
Sbjct: 557 EVRALRKLR 565
>F2HHX7_9CRYP (tr|F2HHX7) RNA-polymerase sigma factor OS=Cryptomonas paramecium
GN=rpoD PE=4 SV=1
Length = 414
Score = 228 bits (581), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 117/302 (38%), Positives = 196/302 (64%), Gaps = 2/302 (0%)
Query: 255 NDPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAG 313
+D R +L+ GK KLL EEE QL +I LL+ E +K L+ + GREPT EW+
Sbjct: 83 DDSVRWYLQLIGKVKLLKPEEEIQLAREISQLLQWEHIKVFLKEKLGREPTALEWSAACK 142
Query: 314 LK-CRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKK 372
+ + + L +++E++I ANLR+V+ +AK Y RG+SLQDL+QEGS+GL+++ +K
Sbjct: 143 ISDVQKFKTVLYNSRKAKERMIAANLRLVVSIAKRYSNRGMSLQDLVQEGSLGLIRATEK 202
Query: 373 FKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRP 432
F + G +F +YA WWIKQ++ +AI HSRTIRLP +Y L I + ++ E P
Sbjct: 203 FDSEKGFKFSTYATWWIKQSVSRAIADHSRTIRLPVHLYDTLSAIKKTTRILTIELGRSP 262
Query: 433 TKEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKE 492
T+E++A ++ ++ DK+ S+L A+ +S+++ + D +T + ESPD V K
Sbjct: 263 TEEEIACKMDVTVDKLRSVLQSAQPTLSLEKPIKNDGDTAQLSDFIEADQESPDEHVEKS 322
Query: 493 LMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKL 552
++R + +++++L +ER +IR+R+G +DG+ ++L E+G+IF +++ERVRQ+E +A KL
Sbjct: 323 MLRDDLRDVINSLSLRERDVIRMRYGLDDGKIRTLEEIGQIFSVTRERVRQIEAKAIRKL 382
Query: 553 KK 554
++
Sbjct: 383 RQ 384
>K9RSJ7_SYNP3 (tr|K9RSJ7) RNA polymerase sigma factor OS=Synechococcus sp.
(strain ATCC 27167 / PCC 6312) GN=Syn6312_1261 PE=3 SV=1
Length = 382
Score = 228 bits (581), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 115/305 (37%), Positives = 198/305 (64%), Gaps = 7/305 (2%)
Query: 255 NDPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAE-----W 308
D RL+L+ G+ +LL +EE +L +I DLL+LE ++ + Q +P E W
Sbjct: 66 EDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIRDRISEQLDCDPDDLERHPEPW 125
Query: 309 AEGAGLKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLK 368
A + A + +L G R++EK++++NLR+V+ +AK Y RGLS QDL+QEGS+GL++
Sbjct: 126 ASEVKMTLPAFRHRLFVGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIR 185
Query: 369 SVKKFKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEG 428
+ +KF + G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + KL QE
Sbjct: 186 AAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEM 245
Query: 429 NLRPTKEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSS 488
+PT+E++A R+ ++ +K+ + A++P+S++ + ++++ + ++ E+P+
Sbjct: 246 GRKPTEEEIAERMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQ 304
Query: 489 VSKELMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRA 548
VSK L+R + +L TL P+ER +++LR+G +DG K+L E+G+IF +++ER+RQ+E +A
Sbjct: 305 VSKHLLREDLETVLCTLSPRERDVLKLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKA 364
Query: 549 FYKLK 553
KL+
Sbjct: 365 LRKLR 369
>Q98RZ3_GUITH (tr|Q98RZ3) RNA-polymerase sigma factor OS=Guillardia theta GN=rpoD
PE=4 SV=1
Length = 460
Score = 228 bits (580), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 120/314 (38%), Positives = 202/314 (64%), Gaps = 4/314 (1%)
Query: 255 NDPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAG 313
+D R +L+ G+ +LL +EE QL +I LL E +K SL+ + REPT +EW
Sbjct: 112 DDSVRWYLQLIGRVRLLRPDEEIQLAREISQLLHWEHVKISLRDKLRREPTNSEWTAACK 171
Query: 314 LK-CRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKK 372
+ R + L R++E+++ ANLR+V+ +AK Y RG+SLQDL+QEGS+GL+++ +K
Sbjct: 172 VSDVRKFRSILHNARRAKERMVAANLRLVVSIAKRYVNRGMSLQDLIQEGSLGLIRAAEK 231
Query: 373 FKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILE-AKKLYIQEGNLR 431
F + G +F +YA WW+KQA+ +AI HSRTIRLP +Y + I + + L I+ G
Sbjct: 232 FDSEKGFKFSTYATWWVKQAVTRAIADHSRTIRLPVHLYDTISAIRKTTRNLNIEIGR-S 290
Query: 432 PTKEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSK 491
PT+E++A+R+ +S +K+ ++L A+ +S+++ + D +T+ + ESP+ V K
Sbjct: 291 PTEEEIAKRMDMSVEKLRNVLQSAQPTLSLERPLKNDDDTSQLSDFIEADQESPEEHVEK 350
Query: 492 ELMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYK 551
++R + N++++L P+ER ++R+R+G +DG K+L E+G+IF +++ERVRQ+E +A K
Sbjct: 351 SMLRDDLENVINSLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKAIRK 410
Query: 552 LKKCLASQGLDAYA 565
L++ S L Y
Sbjct: 411 LRQPYRSSILRDYV 424
>A9BK56_HEMAN (tr|A9BK56) RpoD OS=Hemiselmis andersenii GN=HAN_1g44 PE=4 SV=1
Length = 485
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 120/316 (37%), Positives = 199/316 (62%), Gaps = 8/316 (2%)
Query: 255 NDPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAG 313
+D R +L+ G+ +LL EEE QL +I LL E +K SL+ + REPT +EW
Sbjct: 129 DDSVRWYLQLIGRVRLLRPEEEIQLAREISQLLHWEHVKISLREKLQREPTSSEWTAACK 188
Query: 314 L----KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKS 369
+ K RA+ L R++E+++ ANLR+V+ +AK Y RG+SLQDL+QEGS+GL+++
Sbjct: 189 VSDVKKFRAI---LHNARRAKERMVAANLRLVVSIAKRYVNRGMSLQDLIQEGSLGLIRA 245
Query: 370 VKKFKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGN 429
+KF + G +F +YA WW+KQA+ +AI HSRTIRLP +Y + I + + E
Sbjct: 246 AEKFDSEKGFKFSTYATWWVKQAVTRAIADHSRTIRLPVHLYDTISAIRKTTRTLNIEIG 305
Query: 430 LRPTKEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSV 489
PT+E++A ++ +S +K+ S+L A+ +S+++ + D + + + ESP+ V
Sbjct: 306 RSPTEEEIAEKMDMSVEKLRSVLQSAQPTLSLERPLKNDDDASQLSDFIEADQESPEEHV 365
Query: 490 SKELMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAF 549
K ++R + N++++L P+ER ++R+R+G +DG K+L E+G+IF +++ERVRQ+E +A
Sbjct: 366 EKSMLRDDLENVINSLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKAI 425
Query: 550 YKLKKCLASQGLDAYA 565
KL++ S L Y
Sbjct: 426 RKLRQPYRSSILRDYV 441
>A3Z5L5_9SYNE (tr|A3Z5L5) RNA polymerase sigma factor OS=Synechococcus sp. RS9917
GN=RS9917_09721 PE=3 SV=1
Length = 456
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 120/300 (40%), Positives = 200/300 (66%), Gaps = 4/300 (1%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D R++L+ G+ +LL +EE +L +I DLL LEEL +S GREP EWA +
Sbjct: 146 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLLLEELAAQFESDNGREPDTKEWAALVEM 205
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
+ +L G R++EK++++NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF
Sbjct: 206 PVIKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 265
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
+ G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + K+ QE +PT+
Sbjct: 266 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTE 325
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQE-ITADTSIESPDSSVSKEL 493
E++A + ++ +K+ + A++P+S++ + ++++ + I AD IE+P+ V+K L
Sbjct: 326 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEAD--IENPEQDVAKNL 383
Query: 494 MRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
+R + +L+TL P+ER ++RLR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 384 LREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLR 443
>A4RYI5_OSTLU (tr|A4RYI5) Predicted protein OS=Ostreococcus lucimarinus (strain
CCE9901) GN=OSTLU_41331 PE=4 SV=1
Length = 344
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 113/303 (37%), Positives = 192/303 (63%), Gaps = 4/303 (1%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSL--QSQFGREPTMAEWAEGA 312
D R +L+ G LL +E +L +IQDL+ LE ++ +L ++ G E T +WA A
Sbjct: 15 DSMRSYLKDIGSVTLLNAGQEVELAKRIQDLMHLESIRENLVEETGPGAEVTDYQWASAA 74
Query: 313 GLKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKK 372
GL +AL +LR G ++ ++I+ANLR+V+ +AK Y +S QDL+QEG +GL++ +K
Sbjct: 75 GLNVQALHQRLRDGKSAKNEMIQANLRLVVSIAKKYANSNMSFQDLIQEGCVGLIRGAEK 134
Query: 373 FKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRP 432
F Q G +F +YA+WWI+QA+ ++I SRTIRLP ++ + +I + ++ + P
Sbjct: 135 FDFQRGYKFSTYAHWWIRQAVTRSISDQSRTIRLPVHLFEIISRISKMEQKFALHNGRNP 194
Query: 433 TKEDLARRVGISEDKISSLLYVARIPMSMQQTVWTD-QNTTFQEITADTSIESPDSSVSK 491
T E++A + +S +KI+ + A+ P+S+ QT+ D + T ++ D + E P+ K
Sbjct: 195 TTEEIAAEMDMSAEKITQIKKAAQAPVSLAQTMGGDNKGRTVEDTLVDVTAEGPEKVSGK 254
Query: 492 ELMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYK 551
L++ + N+L+TL P+ER ++RLR+G +DG K+L E+G +F +++ER+RQ+E +A K
Sbjct: 255 SLLKEDLENVLNTLNPRERDVLRLRYGLDDGRVKTLEEIGTVFSVTRERIRQIEAKALRK 314
Query: 552 LKK 554
LK+
Sbjct: 315 LKQ 317
>K9P2V4_CYAGP (tr|K9P2V4) RNA polymerase sigma factor OS=Cyanobium gracile
(strain ATCC 27147 / PCC 6307) GN=Cyagr_0083 PE=3 SV=1
Length = 432
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 116/300 (38%), Positives = 196/300 (65%), Gaps = 4/300 (1%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D R++L+ G+ +LL +EE +L +I DLL+LEE ++ G P EWA +
Sbjct: 122 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLELEEKAAEFEADKGHFPDTKEWAAIFDM 181
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
+ +L G R++EK++ +NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF
Sbjct: 182 PLIKFRRRLMLGRRAKEKMVLSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 241
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
+ G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + K QE +PT+
Sbjct: 242 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKTLSQEFGRKPTE 301
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQE-ITADTSIESPDSSVSKEL 493
E++A + ++ +K+ + A++P+S++ + ++++ + I AD IE+P+ V+K L
Sbjct: 302 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEAD--IENPEQDVAKNL 359
Query: 494 MRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
+R + +L+TL P+ER ++RLR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 360 LREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLR 419
>Q8S9D0_GUITH (tr|Q8S9D0) RNA polymerase sigma factor OS=Guillardia theta GN=sigA
PE=2 SV=1
Length = 490
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 117/313 (37%), Positives = 197/313 (62%), Gaps = 2/313 (0%)
Query: 255 NDPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAG 313
+D R +L+ G+ +LL EEE QL +I LL E +K SL+ + REPT +EW
Sbjct: 129 DDSVRWYLQLIGRVRLLRPEEEIQLAREISQLLHWEHVKISLREKLQREPTSSEWTAACK 188
Query: 314 LK-CRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKK 372
+ + + L R++E+++ ANLR+V+ +AK Y RG+SLQDL+QEGS+GL+++ +K
Sbjct: 189 VSDVKKFRSILHNARRAKERMVAANLRLVVSIAKRYVNRGMSLQDLIQEGSLGLIRAAEK 248
Query: 373 FKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRP 432
F + G +F +YA WW+KQA+ +AI HSRTIRLP +Y + I + + E P
Sbjct: 249 FDSEKGFKFSTYATWWVKQAVTRAIADHSRTIRLPVHLYDTISAIRKTTRTLNIEIGRSP 308
Query: 433 TKEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKE 492
T+E++A ++ +S +K+ S+L A+ +S+++ + D + + + ESP+ V K
Sbjct: 309 TEEEIAEKMDMSVEKLRSVLQSAQPTLSLERPLKNDDDASQLSDFIEADQESPEEHVEKS 368
Query: 493 LMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKL 552
++R + N++++L P+ER ++R+R+G +DG K+L E+G+IF +++ERVRQ+E +A KL
Sbjct: 369 MLRDDLENVINSLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKAIRKL 428
Query: 553 KKCLASQGLDAYA 565
++ S L Y
Sbjct: 429 RQPYRSSILRDYV 441
>Q05RP2_9SYNE (tr|Q05RP2) RNA polymerase sigma factor OS=Synechococcus sp. RS9916
GN=RS9916_27044 PE=3 SV=1
Length = 479
Score = 225 bits (573), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 120/300 (40%), Positives = 200/300 (66%), Gaps = 4/300 (1%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D R++L+ G+ +LL +EE +L +I DLL LEEL +S GREP EWA +
Sbjct: 169 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLLLEELAAQFESDNGREPDTKEWAALVEM 228
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
+ +L G R++EK++++NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF
Sbjct: 229 PLIKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 288
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
+ G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + K+ QE +PT+
Sbjct: 289 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTE 348
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQE-ITADTSIESPDSSVSKEL 493
E++A + ++ +K+ + A++P+S++ + ++++ + I AD IE+P+ V+K L
Sbjct: 349 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEAD--IENPEQDVAKNL 406
Query: 494 MRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
+R + +L+TL P+ER ++RLR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 407 LREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLR 466
>Q8DL79_THEEB (tr|Q8DL79) RNA polymerase sigma factor OS=Thermosynechococcus
elongatus (strain BP-1) GN=sigA PE=3 SV=1
Length = 418
Score = 225 bits (573), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 114/306 (37%), Positives = 200/306 (65%), Gaps = 11/306 (3%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFG-------REPTMAE 307
D RL+L+ G+ +LL +EE +L +I DLL++E ++ L + G R P
Sbjct: 103 DSIRLYLQEIGRIRLLRADEEIELARKIADLLEMERVRDRLCQELGCTAEELERNP--EP 160
Query: 308 WAEGAGLKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLL 367
WA+ G+ A + +L G +++EK++++NLR+V+ +AK Y RGLS QDL+QEGS+GL+
Sbjct: 161 WAKELGMTVPAFRHRLFVGRKAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLI 220
Query: 368 KSVKKFKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQE 427
++ +KF + G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + KL QE
Sbjct: 221 RAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQE 280
Query: 428 GNLRPTKEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDS 487
+PT+E++A R+ ++ +K+ + A++P+S++ + ++++ + ++ E+P+
Sbjct: 281 MGRKPTEEEIADRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPED 339
Query: 488 SVSKELMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENR 547
VSK L+R + +L TL P+ER +++LR+G +DG K+L E+G++F +++ER+RQ+E +
Sbjct: 340 QVSKHLLREDLETVLCTLSPRERDVLKLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAK 399
Query: 548 AFYKLK 553
A KL+
Sbjct: 400 ALRKLR 405
>Q7VD88_PROMA (tr|Q7VD88) RNA polymerase sigma factor OS=Prochlorococcus marinus
(strain SARG / CCMP1375 / SS120) GN=rpoD PE=3 SV=1
Length = 438
Score = 225 bits (573), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 114/299 (38%), Positives = 196/299 (65%), Gaps = 2/299 (0%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D R++L+ G+ +LL +EE +L +I DLL LEEL +S+ G PT EWA +
Sbjct: 128 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAIQFESEHGNYPTKKEWAALVNM 187
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
+ +L R++EK++++NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF
Sbjct: 188 PMARFRRRLMLARRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 247
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
+ G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + K+ QE +P++
Sbjct: 248 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSE 307
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELM 494
E++A + ++ +K+ + A++P+S++ + ++++ + S E+P+ V+K L+
Sbjct: 308 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDS-ENPELDVAKTLL 366
Query: 495 RRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
R + +L+TL P+ER ++RLR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 367 REDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLR 425
>L8NRV5_MICAE (tr|L8NRV5) RNA polymerase sigma factor OS=Microcystis aeruginosa
DIANCHI905 GN=rpoD2 PE=3 SV=1
Length = 328
Score = 224 bits (572), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 119/300 (39%), Positives = 187/300 (62%), Gaps = 2/300 (0%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D R +L G+ LL E+E Q+Q ++ L E K +L Q GREP EWA+ L
Sbjct: 18 DMVRTYLHEIGRVPLLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPQHLEWADSVNL 77
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
L L+ G+R++ K+I+ANLR+V+ +AK YQ R + DL+QEGS+GL + V+KF
Sbjct: 78 SENELDRALKTGDRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFD 137
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
P G +F +YAYWWI+QAI +AI +RTIRLP + +L KI ++ Q+ T
Sbjct: 138 PTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKRTQRELAQKLGRSATP 197
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELM 494
++A + + +I L +AR P+S+ V +Q+T E+ D+ + SPD+ +++EL+
Sbjct: 198 AEIALELDLEPAQIREYLSMARQPISLDVRVGDNQDTELSELLEDSGV-SPDTFITQELL 256
Query: 495 RRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLKK 554
R+ + NLL+ L P++R +I LRFG DG++ SL+++G+ +S+ERVRQLE++A L++
Sbjct: 257 RQDLANLLAELTPQQREVITLRFGLTDGKELSLAKIGQRMNISRERVRQLEHQALAHLRR 316
>A8YCV8_MICAE (tr|A8YCV8) RNA polymerase sigma factor OS=Microcystis aeruginosa
PCC 7806 GN=rpoD PE=3 SV=1
Length = 328
Score = 224 bits (572), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 119/300 (39%), Positives = 187/300 (62%), Gaps = 2/300 (0%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D R +L G+ LL E+E Q+Q ++ L E K +L Q GREP EWA+ L
Sbjct: 18 DMVRTYLHEIGRVPLLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPQHLEWADSVNL 77
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
L L+ G+R++ K+I+ANLR+V+ +AK YQ R + DL+QEGS+GL + V+KF
Sbjct: 78 SENELDRALKTGDRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFD 137
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
P G +F +YAYWWI+QAI +AI +RTIRLP + +L KI ++ Q+ T
Sbjct: 138 PTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKRTQRELAQKLGRSATP 197
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELM 494
++A + + +I L +AR P+S+ V +Q+T E+ D+ + SPD+ +++EL+
Sbjct: 198 AEIALELDLEPAQIREYLSMARQPISLDVRVGDNQDTELSELLEDSGV-SPDTFITQELL 256
Query: 495 RRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLKK 554
R+ + NLL+ L P++R +I LRFG DG++ SL+++G+ +S+ERVRQLE++A L++
Sbjct: 257 RQDLANLLAELTPQQREVITLRFGLTDGKELSLAKIGQRMNISRERVRQLEHQALAHLRR 316
>J7G2H9_9CRYP (tr|J7G2H9) RNA-polymerase sigma factor OS=Chroomonas
mesostigmatica CCMP1168 GN=rpoD PE=4 SV=1
Length = 485
Score = 224 bits (572), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 120/316 (37%), Positives = 199/316 (62%), Gaps = 8/316 (2%)
Query: 255 NDPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAG 313
+D R +L+ G+ +LL EEE QL +I LL E +K SL+ + REPT +EW
Sbjct: 132 DDSVRWYLQLIGRVRLLRPEEEIQLAREISQLLHWEHVKISLREKLQREPTSSEWTAACK 191
Query: 314 L----KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKS 369
+ K RA+ L R++E+++ ANLR+V+ +AK Y RG+SLQDL+QEGS+GL+++
Sbjct: 192 VSDVKKFRAI---LHNARRAKERMVAANLRLVVSIAKRYVNRGMSLQDLIQEGSLGLIRA 248
Query: 370 VKKFKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGN 429
+KF + G +F +YA WW+KQA+ +AI HSRTIRLP +Y + I + + E
Sbjct: 249 AEKFDSEKGFKFSTYATWWVKQAVTRAIADHSRTIRLPVHLYDTISAIRKTTRTLNIEIG 308
Query: 430 LRPTKEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSV 489
PT+E++A ++ +S +K+ S+L A+ +S+++ + D + + + ESP+ V
Sbjct: 309 RSPTEEEIAEKMDMSVEKLRSVLQSAQPTLSLERPLKNDDDASQLSDFIEADQESPEEHV 368
Query: 490 SKELMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAF 549
K ++R + N++++L P+ER ++R+R+G +DG K+L E+G+IF +++ERVRQ+E +A
Sbjct: 369 EKSMLRDDLENVINSLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKAI 428
Query: 550 YKLKKCLASQGLDAYA 565
KL++ S L Y
Sbjct: 429 RKLRQPYRSSILRDYV 444
>K9SYS4_9SYNE (tr|K9SYS4) RNA polymerase sigma factor OS=Synechococcus sp. PCC
7502 GN=Syn7502_03470 PE=3 SV=1
Length = 393
Score = 224 bits (572), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 112/302 (37%), Positives = 198/302 (65%), Gaps = 5/302 (1%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFG---REPTMAEWAEG 311
D RL+L+ G+ +LL +EE +L +I DLL+LE+ + L Q + + +WA
Sbjct: 80 DSIRLYLQEIGRIRLLRADEEIELARKIADLLQLEDKQRELAEQHDCDLEDVNLEDWAVE 139
Query: 312 AGLKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVK 371
+ + +L G R+++K++++NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +
Sbjct: 140 MDMPLDKFKNRLHSGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAE 199
Query: 372 KFKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLR 431
KF + G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + KL QE +
Sbjct: 200 KFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRK 259
Query: 432 PTKEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSK 491
P++E++A R+ ++ +K+ + A++P+S++ + ++++ + ++ E+PD V+K
Sbjct: 260 PSEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPDDQVAK 318
Query: 492 ELMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYK 551
L+R + ++L TL P+ER ++RLR+G +DG K+L E+G+IF +++ER+RQ+E +A K
Sbjct: 319 NLLREDLESVLGTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRK 378
Query: 552 LK 553
L+
Sbjct: 379 LR 380
>B0JU57_MICAN (tr|B0JU57) RNA polymerase sigma factor OS=Microcystis aeruginosa
(strain NIES-843) GN=MAE_14230 PE=3 SV=1
Length = 328
Score = 224 bits (571), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 119/300 (39%), Positives = 187/300 (62%), Gaps = 2/300 (0%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D R +L G+ LL E+E Q+Q ++ L E K +L Q GREP EWA+ L
Sbjct: 18 DMVRTYLHEIGRVPLLTHEQEIIYGKQVQRMMSLLETKEALSKQLGREPDRLEWADSVNL 77
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
L L+ G+R++ K+I+ANLR+V+ +AK YQ R + DL+QEGS+GL + V+KF
Sbjct: 78 SENELDRALKTGDRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFD 137
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
P G +F +YAYWWI+QAI +AI +RTIRLP + +L KI ++ Q+ T
Sbjct: 138 PTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKRTQRELAQKLGRSATP 197
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELM 494
++A + + +I L +AR P+S+ V +Q+T E+ D+ + SPD+ +++EL+
Sbjct: 198 AEIALELELEPAQIREYLSMARQPISLDVRVGDNQDTELSELLEDSGV-SPDTFITQELL 256
Query: 495 RRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLKK 554
R+ + NLL+ L P++R +I LRFG DG++ SL+++G+ +S+ERVRQLE++A L++
Sbjct: 257 RQDLANLLAELTPQQREVITLRFGLTDGKELSLAKIGQRMNISRERVRQLEHQALAHLRR 316
>I4I0R7_MICAE (tr|I4I0R7) RNA polymerase sigma factor OS=Microcystis aeruginosa
PCC 9809 GN=rpoD PE=3 SV=1
Length = 328
Score = 224 bits (571), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 119/300 (39%), Positives = 187/300 (62%), Gaps = 2/300 (0%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D R +L G+ LL E+E Q+Q ++ L E K +L Q GREP EWA+ L
Sbjct: 18 DMVRTYLHEIGRVPLLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPDRLEWADSVNL 77
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
L L+ G+R++ K+I+ANLR+V+ +AK YQ R + DL+QEGS+GL + V+KF
Sbjct: 78 SENELDRALKTGDRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFD 137
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
P G +F +YAYWWI+QAI +AI +RTIRLP + +L KI ++ Q+ T
Sbjct: 138 PTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKRTQRELAQKLGRSATP 197
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELM 494
++A + + +I L +AR P+S+ V +Q+T E+ D+ + SPD+ +++EL+
Sbjct: 198 AEIALELELEPAQIREYLSMARQPISLDVRVGDNQDTELSELLEDSGV-SPDTFITQELL 256
Query: 495 RRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLKK 554
R+ + NLL+ L P++R +I LRFG DG++ SL+++G+ +S+ERVRQLE++A L++
Sbjct: 257 RQDLANLLAELTPQQREVITLRFGLTDGKELSLAKIGQRMNISRERVRQLEHQALAHLRR 316
>I4GQP9_MICAE (tr|I4GQP9) RNA polymerase sigma factor OS=Microcystis aeruginosa
PCC 9806 GN=rpoD PE=3 SV=1
Length = 328
Score = 224 bits (571), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 119/300 (39%), Positives = 187/300 (62%), Gaps = 2/300 (0%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D R +L G+ LL E+E Q+Q ++ L E K +L Q GREP EWA+ L
Sbjct: 18 DMVRTYLHEIGRVPLLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPDRLEWADSVNL 77
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
L L+ G+R++ K+I+ANLR+V+ +AK YQ R + DL+QEGS+GL + V+KF
Sbjct: 78 SENELDRALKTGDRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFD 137
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
P G +F +YAYWWI+QAI +AI +RTIRLP + +L KI ++ Q+ T
Sbjct: 138 PTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKRTQRELAQKLGRSATP 197
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELM 494
++A + + +I L +AR P+S+ V +Q+T E+ D+ + SPD+ +++EL+
Sbjct: 198 AEIALELELEPAQIREYLSMARQPISLDVRVGDNQDTELSELLEDSGV-SPDTFITQELL 256
Query: 495 RRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLKK 554
R+ + NLL+ L P++R +I LRFG DG++ SL+++G+ +S+ERVRQLE++A L++
Sbjct: 257 RQDLANLLAELTPQQREVITLRFGLTDGKELSLAKIGQRMNISRERVRQLEHQALAHLRR 316
>L8AT57_9SYNC (tr|L8AT57) RNA polymerase sigma factor OS=Synechocystis sp. PCC
6803 GN=rpoD PE=3 SV=1
Length = 328
Score = 224 bits (571), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 120/300 (40%), Positives = 188/300 (62%), Gaps = 2/300 (0%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D R +L G+ LL E+E L Q+Q ++ L E K +L + GREP+ EWAE A L
Sbjct: 18 DMVRSYLHEIGRVPLLTHEQEIILGKQVQQMMALLEHKKALADRLGREPSDPEWAEAADL 77
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
L L G R++ K+I+ANLR+V+ +AK YQ R + DL+QEGS+GL + V+KF
Sbjct: 78 SVTKLHRYLGQGERAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFD 137
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
P G +F +YAYWWI+QAI +AI RTIRLP + +L KI + ++ Q+ T
Sbjct: 138 PTKGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKIKKTQRELSQQLGRSATP 197
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELM 494
++A+ + I +I L ++R P+S+ V +Q+T E+ D + SPD+ +++E M
Sbjct: 198 AEVAKALEIDPSQIREYLSLSRQPISLDVRVGDNQDTELSELLEDEGV-SPDAYITQESM 256
Query: 495 RRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLKK 554
R+ + NLL+ L P+++ ++ +RFG DG++ SL+++G+ +S+ERVRQLEN+A +LK+
Sbjct: 257 RQDLQNLLAELTPQQQAVLTMRFGLNDGQELSLAKIGQHLNISRERVRQLENQALAQLKR 316
>I4IWN2_MICAE (tr|I4IWN2) RNA polymerase sigma factor OS=Microcystis aeruginosa
PCC 9701 GN=rpoD PE=3 SV=1
Length = 328
Score = 224 bits (571), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 119/300 (39%), Positives = 187/300 (62%), Gaps = 2/300 (0%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D R +L G+ LL E+E Q+Q ++ L E K +L Q GREP EWA+ L
Sbjct: 18 DMVRTYLHEIGRVPLLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPDRLEWADSVNL 77
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
L L+ G+R++ K+I+ANLR+V+ +AK YQ R + DL+QEGS+GL + V+KF
Sbjct: 78 SENELDRALKTGDRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFD 137
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
P G +F +YAYWWI+QAI +AI +RTIRLP + +L KI ++ Q+ T
Sbjct: 138 PTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKRTQRELAQKLGRSATP 197
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELM 494
++A + + +I L +AR P+S+ V +Q+T E+ D+ + SPD+ +++EL+
Sbjct: 198 AEIALELELEPAQIREYLSMARQPISLDVRVGDNQDTELSELLEDSGV-SPDTFITQELL 256
Query: 495 RRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLKK 554
R+ + NLL+ L P++R +I LRFG DG++ SL+++G+ +S+ERVRQLE++A L++
Sbjct: 257 RQDLANLLAELTPQQREVITLRFGLTDGKELSLAKIGQRMNISRERVRQLEHQALAHLRR 316
>I4FPN8_MICAE (tr|I4FPN8) RNA polymerase sigma factor OS=Microcystis aeruginosa
PCC 9717 GN=rpoD PE=3 SV=1
Length = 328
Score = 224 bits (570), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 119/300 (39%), Positives = 187/300 (62%), Gaps = 2/300 (0%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D R +L G+ LL E+E Q+Q ++ L E K +L Q GREP EWA+ L
Sbjct: 18 DMVRTYLHEIGRVPLLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPQRLEWADSVNL 77
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
L L+ G+R++ K+I+ANLR+V+ +AK YQ R + DL+QEGS+GL + V+KF
Sbjct: 78 SENELDRALKTGDRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFD 137
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
P G +F +YAYWWI+QAI +AI +RTIRLP + +L KI ++ Q+ T
Sbjct: 138 PTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKRTQRELAQKLGRSATP 197
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELM 494
++A + + +I L +AR P+S+ V +Q+T E+ D+ + SPD+ +++EL+
Sbjct: 198 AEIALELELEPAQIREYLSMARQPISLDVRVGDNQDTELSELLEDSGV-SPDTFITQELL 256
Query: 495 RRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLKK 554
R+ + NLL+ L P++R +I LRFG DG++ SL+++G+ +S+ERVRQLE++A L++
Sbjct: 257 RQDLANLLAELTPQQREVITLRFGLTDGKELSLAKIGQRMNISRERVRQLEHQALAHLRR 316
>L7E8N7_MICAE (tr|L7E8N7) RNA polymerase sigma factor OS=Microcystis aeruginosa
TAIHU98 GN=rpoD-2 PE=3 SV=1
Length = 328
Score = 224 bits (570), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 119/300 (39%), Positives = 187/300 (62%), Gaps = 2/300 (0%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D R +L G+ LL E+E Q+Q ++ L E K +L Q GREP EWA+ L
Sbjct: 18 DMVRTYLHEIGRVPLLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPQRLEWADSVNL 77
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
L L+ G+R++ K+I+ANLR+V+ +AK YQ R + DL+QEGS+GL + V+KF
Sbjct: 78 SENELDRALKTGDRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFD 137
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
P G +F +YAYWWI+QAI +AI +RTIRLP + +L KI ++ Q+ T
Sbjct: 138 PTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKRTQRELAQKLGRSATP 197
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELM 494
++A + + +I L +AR P+S+ V +Q+T E+ D+ + SPD+ +++EL+
Sbjct: 198 AEIALELELEPAQIREYLSMARQPISLDVRVGDNQDTELSELLEDSGV-SPDTFITQELL 256
Query: 495 RRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLKK 554
R+ + NLL+ L P++R +I LRFG DG++ SL+++G+ +S+ERVRQLE++A L++
Sbjct: 257 RQDLANLLAELTPQQREVITLRFGLTDGKELSLAKIGQRMNISRERVRQLEHQALAHLRR 316
>I4HMJ3_MICAE (tr|I4HMJ3) RNA polymerase sigma factor OS=Microcystis aeruginosa
PCC 9808 GN=rpoD PE=3 SV=1
Length = 328
Score = 224 bits (570), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 119/300 (39%), Positives = 187/300 (62%), Gaps = 2/300 (0%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D R +L G+ LL E+E Q+Q ++ L E K +L Q GREP EWA+ L
Sbjct: 18 DMVRTYLHEIGRVPLLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPQRLEWADSVNL 77
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
L L+ G+R++ K+I+ANLR+V+ +AK YQ R + DL+QEGS+GL + V+KF
Sbjct: 78 SENELDRALKTGDRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFD 137
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
P G +F +YAYWWI+QAI +AI +RTIRLP + +L KI ++ Q+ T
Sbjct: 138 PTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKRTQRELAQKLGRSATP 197
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELM 494
++A + + +I L +AR P+S+ V +Q+T E+ D+ + SPD+ +++EL+
Sbjct: 198 AEIALELELEPAQIREYLSMARQPISLDVRVGDNQDTELSELLEDSGV-SPDTFITQELL 256
Query: 495 RRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLKK 554
R+ + NLL+ L P++R +I LRFG DG++ SL+++G+ +S+ERVRQLE++A L++
Sbjct: 257 RQDLANLLAELTPQQREVITLRFGLTDGKELSLAKIGQRMNISRERVRQLEHQALAHLRR 316
>I4GJA8_MICAE (tr|I4GJA8) RNA polymerase sigma factor OS=Microcystis aeruginosa
PCC 7941 GN=rpoD PE=3 SV=1
Length = 328
Score = 224 bits (570), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 119/300 (39%), Positives = 187/300 (62%), Gaps = 2/300 (0%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D R +L G+ LL E+E Q+Q ++ L E K +L Q GREP EWA+ L
Sbjct: 18 DMVRTYLHEIGRVPLLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPQRLEWADSVNL 77
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
L L+ G+R++ K+I+ANLR+V+ +AK YQ R + DL+QEGS+GL + V+KF
Sbjct: 78 SENELDRALKTGDRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFD 137
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
P G +F +YAYWWI+QAI +AI +RTIRLP + +L KI ++ Q+ T
Sbjct: 138 PTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKRTQRELAQKLGRSATP 197
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELM 494
++A + + +I L +AR P+S+ V +Q+T E+ D+ + SPD+ +++EL+
Sbjct: 198 AEIALELELEPAQIREYLSMARQPISLDVRVGDNQDTELSELLEDSGV-SPDTFITQELL 256
Query: 495 RRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLKK 554
R+ + NLL+ L P++R +I LRFG DG++ SL+++G+ +S+ERVRQLE++A L++
Sbjct: 257 RQDLANLLAELTPQQREVITLRFGLTDGKELSLAKIGQRMNISRERVRQLEHQALAHLRR 316
>I4FIV5_MICAE (tr|I4FIV5) RNA polymerase sigma factor OS=Microcystis aeruginosa
PCC 9432 GN=rpoD PE=3 SV=1
Length = 328
Score = 224 bits (570), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 119/300 (39%), Positives = 187/300 (62%), Gaps = 2/300 (0%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D R +L G+ LL E+E Q+Q ++ L E K +L Q GREP EWA+ L
Sbjct: 18 DMVRTYLHEIGRVPLLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPQRLEWADSVNL 77
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
L L+ G+R++ K+I+ANLR+V+ +AK YQ R + DL+QEGS+GL + V+KF
Sbjct: 78 SENELDRALKTGDRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFD 137
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
P G +F +YAYWWI+QAI +AI +RTIRLP + +L KI ++ Q+ T
Sbjct: 138 PTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKRTQRELAQKLGRSATP 197
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELM 494
++A + + +I L +AR P+S+ V +Q+T E+ D+ + SPD+ +++EL+
Sbjct: 198 AEIALELELEPAQIREYLSMARQPISLDVRVGDNQDTELSELLEDSGV-SPDTFITQELL 256
Query: 495 RRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLKK 554
R+ + NLL+ L P++R +I LRFG DG++ SL+++G+ +S+ERVRQLE++A L++
Sbjct: 257 RQDLANLLAELTPQQREVITLRFGLTDGKELSLAKIGQRMNISRERVRQLEHQALAHLRR 316
>I4G7M0_MICAE (tr|I4G7M0) RNA polymerase sigma factor OS=Microcystis aeruginosa
PCC 9443 GN=rpoD PE=3 SV=1
Length = 328
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 119/300 (39%), Positives = 186/300 (62%), Gaps = 2/300 (0%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D R +L G+ LL E+E Q+Q ++ L E K L Q GREP EWA+ L
Sbjct: 18 DMVRTYLHEIGRVPLLTHEQEIIYGKQVQRMMSLLEAKEGLSKQLGREPQQLEWADSVNL 77
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
L L+ G+R++ K+I+ANLR+V+ +AK YQ R + DL+QEGS+GL + V+KF
Sbjct: 78 SENELDRALKTGDRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFD 137
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
P G +F +YAYWWI+QAI +AI +RTIRLP + +L KI ++ Q+ T
Sbjct: 138 PTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKRTQRELAQKLGRSATP 197
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELM 494
++A + + +I L +AR P+S+ V +Q+T E+ D+ + SPD+ +++EL+
Sbjct: 198 AEIALELELEPAQIREYLSMARQPISLDVRVGDNQDTELSELLEDSGV-SPDTFITQELL 256
Query: 495 RRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLKK 554
R+ + NLL+ L P++R +I LRFG DG++ SL+++G+ +S+ERVRQLE++A L++
Sbjct: 257 RQDLANLLAELTPQQREVISLRFGLSDGKELSLAKIGQRMNISRERVRQLEHQALAHLRR 316
>B8HQG4_CYAP4 (tr|B8HQG4) RNA polymerase sigma factor OS=Cyanothece sp. (strain
PCC 7425 / ATCC 29141) GN=Cyan7425_1584 PE=3 SV=1
Length = 327
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 124/314 (39%), Positives = 193/314 (61%), Gaps = 2/314 (0%)
Query: 242 IRVKRKINEAFDQNDPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFG 300
++ K + ++ D R +L G+ LL E+E L Q+Q L++L E + L +
Sbjct: 4 LKTKTQTRDSMVSTDMVRTYLHEIGRVPLLTHEQEIVLGKQVQQLMELLEAREKLTTSLD 63
Query: 301 REPTMAEWAEGAGLKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQ 360
R PT EWAE A L L +R G R+++K+I+ANLR+V+ VAK YQ R L L DL+Q
Sbjct: 64 RSPTAEEWAEQANLSVADLNTAVRRGQRAKQKMIEANLRLVVSVAKKYQKRNLELLDLIQ 123
Query: 361 EGSMGLLKSVKKFKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEA 420
EG++GL + V+KF P G +F +YAYWWI+QAI +AI +RT+RLP + +L KI +A
Sbjct: 124 EGTLGLERGVEKFDPTRGYKFSTYAYWWIRQAITRAIAQQARTVRLPIHITEKLNKIKKA 183
Query: 421 KKLYIQEGNLRPTKEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADT 480
+++ Q T ++A+ + + +I L +AR P+S+ V +Q+T +++ D
Sbjct: 184 QRVLSQRLGRSATPAEIAQELELEPSQIREYLTLARQPVSLDLRVGDNQDTELRDLLEDD 243
Query: 481 SIESPDSSVSKELMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKER 540
S SP+ + E +R V +LL+ L P++R ++ LRFG EDG++ SL++VGE LS+ER
Sbjct: 244 S-PSPEQYTTGEALRDDVNHLLAELTPQQREVLTLRFGLEDGKELSLAKVGEQLSLSRER 302
Query: 541 VRQLENRAFYKLKK 554
VRQLE +A L++
Sbjct: 303 VRQLERQALDHLRR 316
>Q55525_SYNY3 (tr|Q55525) RNA polymerase sigma factor OS=Synechocystis sp.
(strain PCC 6803 / Kazusa) GN=rpoD PE=3 SV=1
Length = 345
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 120/300 (40%), Positives = 188/300 (62%), Gaps = 2/300 (0%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D R +L G+ LL E+E L Q+Q ++ L E K +L + GREP+ EWAE A L
Sbjct: 35 DMVRSYLHEIGRVPLLTHEQEIILGKQVQQMMALLEHKKALADRLGREPSDPEWAEAADL 94
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
L L G R++ K+I+ANLR+V+ +AK YQ R + DL+QEGS+GL + V+KF
Sbjct: 95 SVTKLHRYLGQGERAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFD 154
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
P G +F +YAYWWI+QAI +AI RTIRLP + +L KI + ++ Q+ T
Sbjct: 155 PTKGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKIKKTQRELSQQLGRSATP 214
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELM 494
++A+ + I +I L ++R P+S+ V +Q+T E+ D + SPD+ +++E M
Sbjct: 215 AEVAKALEIDPSQIREYLSLSRQPISLDVRVGDNQDTELSELLEDEGV-SPDAYITQESM 273
Query: 495 RRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLKK 554
R+ + NLL+ L P+++ ++ +RFG DG++ SL+++G+ +S+ERVRQLEN+A +LK+
Sbjct: 274 RQDLQNLLAELTPQQQAVLTMRFGLNDGQELSLAKIGQHLNISRERVRQLENQALAQLKR 333
>F7URP3_SYNYG (tr|F7URP3) RNA polymerase sigma factor OS=Synechocystis sp.
(strain PCC 6803 / GT-S) GN=rpoD PE=3 SV=1
Length = 345
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 120/300 (40%), Positives = 188/300 (62%), Gaps = 2/300 (0%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D R +L G+ LL E+E L Q+Q ++ L E K +L + GREP+ EWAE A L
Sbjct: 35 DMVRSYLHEIGRVPLLTHEQEIILGKQVQQMMALLEHKKALADRLGREPSDPEWAEAADL 94
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
L L G R++ K+I+ANLR+V+ +AK YQ R + DL+QEGS+GL + V+KF
Sbjct: 95 SVTKLHRYLGQGERAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFD 154
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
P G +F +YAYWWI+QAI +AI RTIRLP + +L KI + ++ Q+ T
Sbjct: 155 PTKGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKIKKTQRELSQQLGRSATP 214
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELM 494
++A+ + I +I L ++R P+S+ V +Q+T E+ D + SPD+ +++E M
Sbjct: 215 AEVAKALEIDPSQIREYLSLSRQPISLDVRVGDNQDTELSELLEDEGV-SPDAYITQESM 273
Query: 495 RRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLKK 554
R+ + NLL+ L P+++ ++ +RFG DG++ SL+++G+ +S+ERVRQLEN+A +LK+
Sbjct: 274 RQDLQNLLAELTPQQQAVLTMRFGLNDGQELSLAKIGQHLNISRERVRQLENQALAQLKR 333
>M1MBB9_9SYNC (tr|M1MBB9) RNA polymerase sigma factor OS=Synechocystis sp. PCC
6803 GN=rpoD PE=3 SV=1
Length = 345
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 120/300 (40%), Positives = 188/300 (62%), Gaps = 2/300 (0%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D R +L G+ LL E+E L Q+Q ++ L E K +L + GREP+ EWAE A L
Sbjct: 35 DMVRSYLHEIGRVPLLTHEQEIILGKQVQQMMALLEHKKALADRLGREPSDPEWAEAADL 94
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
L L G R++ K+I+ANLR+V+ +AK YQ R + DL+QEGS+GL + V+KF
Sbjct: 95 SVTKLHRYLGQGERAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFD 154
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
P G +F +YAYWWI+QAI +AI RTIRLP + +L KI + ++ Q+ T
Sbjct: 155 PTKGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKIKKTQRELSQQLGRSATP 214
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELM 494
++A+ + I +I L ++R P+S+ V +Q+T E+ D + SPD+ +++E M
Sbjct: 215 AEVAKALEIDPSQIREYLSLSRQPISLDVRVGDNQDTELSELLEDEGV-SPDAYITQESM 273
Query: 495 RRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLKK 554
R+ + NLL+ L P+++ ++ +RFG DG++ SL+++G+ +S+ERVRQLEN+A +LK+
Sbjct: 274 RQDLQNLLAELTPQQQAVLTMRFGLNDGQELSLAKIGQHLNISRERVRQLENQALAQLKR 333
>H0PFH3_9SYNC (tr|H0PFH3) RNA polymerase sigma factor OS=Synechocystis sp. PCC
6803 substr. PCC-P GN=rpoD PE=3 SV=1
Length = 345
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 120/300 (40%), Positives = 188/300 (62%), Gaps = 2/300 (0%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D R +L G+ LL E+E L Q+Q ++ L E K +L + GREP+ EWAE A L
Sbjct: 35 DMVRSYLHEIGRVPLLTHEQEIILGKQVQQMMALLEHKKALADRLGREPSDPEWAEAADL 94
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
L L G R++ K+I+ANLR+V+ +AK YQ R + DL+QEGS+GL + V+KF
Sbjct: 95 SVTKLHRYLGQGERAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFD 154
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
P G +F +YAYWWI+QAI +AI RTIRLP + +L KI + ++ Q+ T
Sbjct: 155 PTKGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKIKKTQRELSQQLGRSATP 214
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELM 494
++A+ + I +I L ++R P+S+ V +Q+T E+ D + SPD+ +++E M
Sbjct: 215 AEVAKALEIDPSQIREYLSLSRQPISLDVRVGDNQDTELSELLEDEGV-SPDAYITQESM 273
Query: 495 RRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLKK 554
R+ + NLL+ L P+++ ++ +RFG DG++ SL+++G+ +S+ERVRQLEN+A +LK+
Sbjct: 274 RQDLQNLLAELTPQQQAVLTMRFGLNDGQELSLAKIGQHLNISRERVRQLENQALAQLKR 333
>H0PAJ0_9SYNC (tr|H0PAJ0) RNA polymerase sigma factor OS=Synechocystis sp. PCC
6803 substr. PCC-N GN=rpoD PE=3 SV=1
Length = 345
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 120/300 (40%), Positives = 188/300 (62%), Gaps = 2/300 (0%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D R +L G+ LL E+E L Q+Q ++ L E K +L + GREP+ EWAE A L
Sbjct: 35 DMVRSYLHEIGRVPLLTHEQEIILGKQVQQMMALLEHKKALADRLGREPSDPEWAEAADL 94
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
L L G R++ K+I+ANLR+V+ +AK YQ R + DL+QEGS+GL + V+KF
Sbjct: 95 SVTKLHRYLGQGERAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFD 154
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
P G +F +YAYWWI+QAI +AI RTIRLP + +L KI + ++ Q+ T
Sbjct: 155 PTKGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKIKKTQRELSQQLGRSATP 214
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELM 494
++A+ + I +I L ++R P+S+ V +Q+T E+ D + SPD+ +++E M
Sbjct: 215 AEVAKALEIDPSQIREYLSLSRQPISLDVRVGDNQDTELSELLEDEGV-SPDAYITQESM 273
Query: 495 RRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLKK 554
R+ + NLL+ L P+++ ++ +RFG DG++ SL+++G+ +S+ERVRQLEN+A +LK+
Sbjct: 274 RQDLQNLLAELTPQQQAVLTMRFGLNDGQELSLAKIGQHLNISRERVRQLENQALAQLKR 333
>H0NY38_9SYNC (tr|H0NY38) RNA polymerase sigma factor OS=Synechocystis sp. PCC
6803 substr. GT-I GN=rpoD PE=3 SV=1
Length = 345
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 120/300 (40%), Positives = 188/300 (62%), Gaps = 2/300 (0%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D R +L G+ LL E+E L Q+Q ++ L E K +L + GREP+ EWAE A L
Sbjct: 35 DMVRSYLHEIGRVPLLTHEQEIILGKQVQQMMALLEHKKALADRLGREPSDPEWAEAADL 94
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
L L G R++ K+I+ANLR+V+ +AK YQ R + DL+QEGS+GL + V+KF
Sbjct: 95 SVTKLHRYLGQGERAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFD 154
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
P G +F +YAYWWI+QAI +AI RTIRLP + +L KI + ++ Q+ T
Sbjct: 155 PTKGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKIKKTQRELSQQLGRSATP 214
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELM 494
++A+ + I +I L ++R P+S+ V +Q+T E+ D + SPD+ +++E M
Sbjct: 215 AEVAKALEIDPSQIREYLSLSRQPISLDVRVGDNQDTELSELLEDEGV-SPDAYITQESM 273
Query: 495 RRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLKK 554
R+ + NLL+ L P+++ ++ +RFG DG++ SL+++G+ +S+ERVRQLEN+A +LK+
Sbjct: 274 RQDLQNLLAELTPQQQAVLTMRFGLNDGQELSLAKIGQHLNISRERVRQLENQALAQLKR 333
>I4H4V9_MICAE (tr|I4H4V9) RNA polymerase sigma factor OS=Microcystis aeruginosa
PCC 9807 GN=rpoD PE=3 SV=1
Length = 328
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 119/300 (39%), Positives = 186/300 (62%), Gaps = 2/300 (0%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D R +L G+ LL E+E Q+Q ++ L E K L Q GREP EWA+ L
Sbjct: 18 DMVRTYLHEIGRVPLLTHEQEIIYGKQVQRMMSLLEAKEGLSKQLGREPQQLEWADSVNL 77
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
L L+ G+R++ K+I+ANLR+V+ +AK YQ R + DL+QEGS+GL + V+KF
Sbjct: 78 SENELDRALKTGDRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFD 137
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
P G +F +YAYWWI+QAI +AI +RTIRLP + +L KI ++ Q+ T
Sbjct: 138 PTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKRTQRELAQKLGRSATP 197
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELM 494
++A + + +I L +AR P+S+ V +Q+T E+ D+ + SPD+ +++EL+
Sbjct: 198 AEIALELELEPAQIREYLSMARQPISLDVRVGDNQDTELSELLEDSGV-SPDTFITQELL 256
Query: 495 RRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLKK 554
R+ + NLL+ L P++R +I LRFG DG++ SL+++G+ +S+ERVRQLE++A L++
Sbjct: 257 RQDLANLLAELTPQQREVITLRFGLTDGKELSLAKIGQRMNISRERVRQLEHQALAHLRR 316
>A3IZB7_9CHRO (tr|A3IZB7) RNA polymerase sigma factor OS=Cyanothece sp. CCY0110
GN=CY0110_28609 PE=3 SV=1
Length = 328
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 120/312 (38%), Positives = 194/312 (62%), Gaps = 2/312 (0%)
Query: 244 VKRKINEAFDQNDPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGRE 302
V K + D R +L G+ LL E+E Q+Q ++ L E K L + G+E
Sbjct: 6 VNTKTKQPMYSADMVRTYLHEIGRVPLLTHEQEIIYGKQVQTMMNLLEKKEELAQRVGKE 65
Query: 303 PTMAEWAEGAGLKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEG 362
P++ EWA+ ++ +ALQ L G R++ K+I+ANLR+V+ +AK YQ R + DL+QEG
Sbjct: 66 PSIQEWAKEVNIEEKALQKALEQGERAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEG 125
Query: 363 SMGLLKSVKKFKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKK 422
S+GL + V+KF P G +F +YAYWWI+QAI +AI +RTIRLP + +L KI + ++
Sbjct: 126 SLGLERGVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKTQR 185
Query: 423 LYIQEGNLRPTKEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSI 482
Q T ++A+ + I +I L +AR P+S+ V +Q+T E+ D +
Sbjct: 186 ELSQSLGRSATPAEIAQELEIEPSQIREFLSIARQPISLDVRVGDNQDTELSELLEDQGV 245
Query: 483 ESPDSSVSKELMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVR 542
SPD +++EL+R+ + NL++ L P++R ++ LRFG EDG++ SL+++G+ +S+ERVR
Sbjct: 246 -SPDIYITQELLRQDLSNLMAELTPQQRTVLTLRFGLEDGKELSLAKIGKRLNISRERVR 304
Query: 543 QLENRAFYKLKK 554
QLE++A +L++
Sbjct: 305 QLEHQALAQLRR 316
>I4IFY1_9CHRO (tr|I4IFY1) RNA polymerase sigma factor OS=Microcystis sp. T1-4
GN=rpoD PE=3 SV=1
Length = 328
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 118/300 (39%), Positives = 187/300 (62%), Gaps = 2/300 (0%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D R +L G+ LL E+E Q+Q ++ L E K +L Q GREP +WA+ L
Sbjct: 18 DMVRTYLHEIGRVPLLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPDRLDWADSVNL 77
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
L L+ G+R++ K+I+ANLR+V+ +AK YQ R + DL+QEGS+GL + V+KF
Sbjct: 78 SENELDRALKTGDRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFD 137
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
P G +F +YAYWWI+QAI +AI +RTIRLP + +L KI ++ Q+ T
Sbjct: 138 PTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKRTQRELAQKLGRSATP 197
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELM 494
++A + + +I L +AR P+S+ V +Q+T E+ D+ + SPD+ +++EL+
Sbjct: 198 AEIALELELEPAQIREYLSMARQPISLDVRVGDNQDTELSELLEDSGV-SPDTFITQELL 256
Query: 495 RRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLKK 554
R+ + NLL+ L P++R +I LRFG DG++ SL+++G+ +S+ERVRQLE++A L++
Sbjct: 257 RQDLANLLAELTPQQREVITLRFGLTDGKELSLAKIGQRMNISRERVRQLEHQALAHLRR 316
>B1WQ73_CYAA5 (tr|B1WQ73) RNA polymerase sigma factor OS=Cyanothece sp. (strain
ATCC 51142) GN=sigB PE=3 SV=1
Length = 328
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 118/300 (39%), Positives = 189/300 (63%), Gaps = 2/300 (0%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D R +L G+ LL E+E Q+Q ++ L E K L G+EP++ EWA+ L
Sbjct: 18 DMVRTYLHEIGRVPLLTHEQEIIYGKQVQKMMSLLETKEELAQSLGKEPSLQEWAKEVNL 77
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
+ +AL L G R++ K+I+ANLR+V+ +AK YQ R + DL+QEGS+GL + V+KF
Sbjct: 78 EEKALTKALEQGERAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFD 137
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
P G +F +YAYWWI+QAI +AI +RTIRLP + +L KI + ++ Q T
Sbjct: 138 PTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKTQRELSQTLGRSATP 197
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELM 494
++A+ + I +I L +AR P+S+ V +Q+T E+ D + SPD +++EL+
Sbjct: 198 AEIAQELEIEPSQIREFLSIARQPISLDVRVGDNQDTELSELLEDQGV-SPDIYITQELL 256
Query: 495 RRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLKK 554
R+ + NL++ L P++R ++ LRFG EDG++ SL+++G+ +S+ERVRQLE++A +L++
Sbjct: 257 RQDLSNLMAELTPQQRTVLTLRFGLEDGKELSLAKIGKRLNISRERVRQLEHQALAQLRR 316
>G6GV95_9CHRO (tr|G6GV95) RNA polymerase sigma factor OS=Cyanothece sp. ATCC
51472 GN=Cy51472DRAFT_2908 PE=3 SV=1
Length = 328
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 118/300 (39%), Positives = 189/300 (63%), Gaps = 2/300 (0%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D R +L G+ LL E+E Q+Q ++ L E K L G+EP++ EWA+ L
Sbjct: 18 DMVRTYLHEIGRVPLLTHEQEIIYGKQVQKMMSLLETKEELAQSLGKEPSLQEWAKEVNL 77
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
+ +AL L G R++ K+I+ANLR+V+ +AK YQ R + DL+QEGS+GL + V+KF
Sbjct: 78 EEKALTKALEQGERAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFD 137
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
P G +F +YAYWWI+QAI +AI +RTIRLP + +L KI + ++ Q T
Sbjct: 138 PTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKTQRELSQTLGRSATP 197
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELM 494
++A+ + I +I L +AR P+S+ V +Q+T E+ D + SPD +++EL+
Sbjct: 198 AEIAQELEIEPSQIREFLSIARQPISLDVRVGDNQDTELSELLEDQGV-SPDIYITQELL 256
Query: 495 RRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLKK 554
R+ + NL++ L P++R ++ LRFG EDG++ SL+++G+ +S+ERVRQLE++A +L++
Sbjct: 257 RQDLSNLMAELTPQQRTVLTLRFGLEDGKELSLAKIGKRLNISRERVRQLEHQALAQLRR 316
>C1MUC7_MICPC (tr|C1MUC7) Predicted protein OS=Micromonas pusilla (strain
CCMP1545) GN=MICPUCDRAFT_47508 PE=4 SV=1
Length = 587
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 111/320 (34%), Positives = 199/320 (62%), Gaps = 6/320 (1%)
Query: 241 RIRVKRKINEAFDQNDPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQF 299
R KR + + Q D + +L+ G LL E+E +L ++IQDL+ LE ++ L+ +
Sbjct: 239 RKTTKRDPSTSRRQTDSMKTYLKDIGSVSLLTGEQEVELAMRIQDLVYLEGVREQLEEEA 298
Query: 300 GREPTMAE-----WAEGAGLKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLS 354
R +E WA A + R L+ +L G R++ ++I+ANLR+V+ +AK Y + +S
Sbjct: 299 KRRKQTSEVSNFDWAIAANVTERELKERLDAGKRAKNQMIQANLRLVVSIAKRYANKSMS 358
Query: 355 LQDLLQEGSMGLLKSVKKFKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQL 414
QDL+QEG +GL++ +KF + G +F +YA+WWI+QA+ ++I SRTIRLP ++ +
Sbjct: 359 FQDLIQEGCVGLIRGAEKFDFKRGYKFSTYAHWWIRQAVTRSISDQSRTIRLPVHLFEII 418
Query: 415 GKILEAKKLYIQEGNLRPTKEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQ 474
++ + ++ + + PT E++A + ++ +KI+ + + +P+S+ Q+V D + T +
Sbjct: 419 SRMSKVERQLVMKYGRDPTTEEIAEVMDMTVEKINQIQKASLVPISLSQSVNDDDSRTVE 478
Query: 475 EITADTSIESPDSSVSKELMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIF 534
E D E PD + K L++ + N+L+TL P+ER ++RLR+G +DG K+L E+G +F
Sbjct: 479 ETLVDDHAEHPDDATGKVLLKEDLENVLNTLSPRERDVLRLRYGMDDGRVKTLEEIGNVF 538
Query: 535 GLSKERVRQLENRAFYKLKK 554
+++ER+RQ+E +A KL++
Sbjct: 539 SVTRERIRQIEAKALRKLRQ 558
>D8FXC8_9CYAN (tr|D8FXC8) RNA polymerase sigma factor OS=Oscillatoria sp. PCC
6506 GN=sigB PE=3 SV=1
Length = 334
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 121/301 (40%), Positives = 186/301 (61%), Gaps = 2/301 (0%)
Query: 255 NDPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAG 313
D R +L G+ LL E+E Q+Q +++L E K L + REPT EWA
Sbjct: 24 TDTVRTYLHEIGRVALLTREQEIIYGKQVQQMMQLLEAKEELAKELRREPTEVEWALQVQ 83
Query: 314 LKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKF 373
L L+ + G R+++K+I+ANLR+V+ +AK YQ R + DL+QEG++GL + V+KF
Sbjct: 84 LSEAELKRLMHQGRRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKF 143
Query: 374 KPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPT 433
P G +F +YAYWWI+QAI +AI H+RTIRLP + +L KI + ++ Q+ PT
Sbjct: 144 DPMRGYKFSTYAYWWIRQAITRAIAQHARTIRLPIHITEKLNKIKKVQRELAQQLGRSPT 203
Query: 434 KEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKEL 493
++ + + +I L +AR P+S+ V +Q+T QE+ D S SPD ++ EL
Sbjct: 204 PAEIGSALELHPSQIREYLLMARHPVSLDLRVGDNQDTELQELLEDESA-SPDDYITGEL 262
Query: 494 MRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
+R+ + NL++ L P++R ++ LRFG EDG + SL++VGE LS+ERVRQLE++A L+
Sbjct: 263 LRQDLNNLMAELTPQQRDVLSLRFGLEDGHEMSLAKVGERLKLSRERVRQLEHQALAHLR 322
Query: 554 K 554
+
Sbjct: 323 R 323
>K9VQV7_9CYAN (tr|K9VQV7) RNA polymerase sigma factor OS=Oscillatoria
nigro-viridis PCC 7112 GN=Osc7112_5673 PE=3 SV=1
Length = 334
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 123/314 (39%), Positives = 192/314 (61%), Gaps = 2/314 (0%)
Query: 242 IRVKRKINEAFDQNDPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFG 300
++ R + + D R +L G+ LL EEE Q+Q ++KL E K +L ++
Sbjct: 11 VKADRMGSRPYSSTDTVRAYLHEIGRVPLLTREEEIVFGKQVQQMMKLIEAKQALAKEWQ 70
Query: 301 REPTMAEWAEGAGLKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQ 360
R+ T EWA L L L G R+++K+I+ANLR+V+ +AK YQ R + DL+Q
Sbjct: 71 RDLTNQEWAAEMELTEPELSRILHIGRRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 130
Query: 361 EGSMGLLKSVKKFKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEA 420
EG++GL + V+KF P G +F +YAYWWI+QAI +AI H+RTIRLP + +L KI +
Sbjct: 131 EGTLGLERGVEKFDPMRGYKFSTYAYWWIRQAITRAIAQHARTIRLPIHITEKLNKIKKV 190
Query: 421 KKLYIQEGNLRPTKEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADT 480
++ Q+ P+ ++A + + +I L +AR P+S+ V +Q+T QE+ D
Sbjct: 191 QRELTQQLGRSPSPGEIATALELHPSQIREYLLMARHPVSLDLRVGDNQDTELQELLEDE 250
Query: 481 SIESPDSSVSKELMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKER 540
+ SPD+ ++ EL+R+ + L+S L P++R +I LRFG EDG + SL++VGE LS+ER
Sbjct: 251 TA-SPDNYITSELLRQDLDTLISELTPQQRDVIILRFGLEDGTEMSLAKVGERLNLSRER 309
Query: 541 VRQLENRAFYKLKK 554
VRQLE++A L++
Sbjct: 310 VRQLEHQALAHLRR 323
>F5UG18_9CYAN (tr|F5UG18) RNA polymerase sigma factor OS=Microcoleus vaginatus
FGP-2 GN=MicvaDRAFT_3140 PE=3 SV=1
Length = 334
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 123/314 (39%), Positives = 192/314 (61%), Gaps = 2/314 (0%)
Query: 242 IRVKRKINEAFDQNDPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFG 300
++ R + + D R +L G+ LL EEE Q+Q ++KL E K +L ++
Sbjct: 11 VKADRMGSRPYSSTDTVRTYLHEIGRVPLLTREEEIVFGKQVQQMMKLIEAKQALAKEWQ 70
Query: 301 REPTMAEWAEGAGLKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQ 360
R+ T EWA L L L G R+++K+I+ANLR+V+ +AK YQ R + DL+Q
Sbjct: 71 RDLTNQEWAAEMELTEPELSRILHIGRRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 130
Query: 361 EGSMGLLKSVKKFKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEA 420
EG++GL + V+KF P G +F +YAYWWI+QAI +AI H+RTIRLP + +L KI +
Sbjct: 131 EGTLGLERGVEKFDPMRGYKFSTYAYWWIRQAITRAIAQHARTIRLPIHITEKLNKIKKV 190
Query: 421 KKLYIQEGNLRPTKEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADT 480
++ Q+ P+ ++A + + +I L +AR P+S+ V +Q+T QE+ D
Sbjct: 191 QRELTQQLGRSPSPGEIAAALELHPSQIREYLLMARHPVSLDLRVGDNQDTELQELLEDE 250
Query: 481 SIESPDSSVSKELMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKER 540
+ SPD+ ++ EL+R+ + L+S L P++R +I LRFG EDG + SL++VGE LS+ER
Sbjct: 251 TA-SPDNYITSELLRQDLDTLISELTPQQRDVIILRFGLEDGTEMSLAKVGERLNLSRER 309
Query: 541 VRQLENRAFYKLKK 554
VRQLE++A L++
Sbjct: 310 VRQLEHQALAHLRR 323
>K9Z5T0_CYAAP (tr|K9Z5T0) RNA polymerase sigma factor OS=Cyanobacterium aponinum
(strain PCC 10605) GN=Cyan10605_2465 PE=3 SV=1
Length = 332
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 120/315 (38%), Positives = 196/315 (62%), Gaps = 6/315 (1%)
Query: 245 KRKINEAFDQNDPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREP 303
KR++N D R +L+ GK LL E+E Q+Q ++ L E+K +L+ RE
Sbjct: 15 KRRVNTV----DMVRTYLQEIGKVPLLSHEQEIVFGKQVQQMMSLYEVKENLEKNLEREV 70
Query: 304 TMAEWAEGAGLKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGS 363
T+ EWA+ A ++ + G R+++K+I+ANLR+V+ +AK YQ R + DL+QEGS
Sbjct: 71 TLEEWAQKADKTPNEVKKIIHQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGS 130
Query: 364 MGLLKSVKKFKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKL 423
+GL + V+KF P G +F +YAYWWI+QAI +AI +RTIRLP + +L KI + ++
Sbjct: 131 LGLERGVEKFDPTKGFKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKTQRE 190
Query: 424 YIQEGNLRPTKEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIE 483
Q+ P+ ++A + + +I +AR P+S+ V +Q+T E+ D +
Sbjct: 191 LSQKLGRSPSPNEIAEALQLEPAQIREYFSIARQPISLDVKVGDNQDTELSELLEDEGV- 249
Query: 484 SPDSSVSKELMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQ 543
SPD+ +++ELMR+ + LL L P++++++RLRFG EDG++ SL+++G+ +S+ERVRQ
Sbjct: 250 SPDNYITQELMRQDLQKLLGELTPQQQQVVRLRFGLEDGKELSLAKIGQRMNISRERVRQ 309
Query: 544 LENRAFYKLKKCLAS 558
LE +A L+K +S
Sbjct: 310 LEQQALAHLRKKRSS 324
>D4TMC1_9NOST (tr|D4TMC1) RNA polymerase sigma factor OS=Raphidiopsis brookii D9
GN=CRD_00081 PE=3 SV=1
Length = 327
Score = 221 bits (564), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 115/302 (38%), Positives = 189/302 (62%), Gaps = 6/302 (1%)
Query: 256 DPQRLFLRSPGKKLLPIEEESQLIV---QIQDLLKLEELKTSLQSQFGREPTMAEWAEGA 312
D R +LR G+ +P+ Q I+ Q+Q ++ L E K +L + G EP+++EWA
Sbjct: 18 DMVRTYLREIGR--VPLLNREQEIIYGKQVQQMMILVEAKEALAKELGYEPSLSEWAIYV 75
Query: 313 GLKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKK 372
L+ K+ G R+++K+I+ANLR+V+ +AK YQ R + DL+QEG++GL + V+K
Sbjct: 76 NQSENDLKHKISTGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEK 135
Query: 373 FKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRP 432
F P +G +F +YAYWWI+QAI +AI RTIRLP + +L KI + ++ Q+ P
Sbjct: 136 FDPTMGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKIKKVQRELAQKLGRSP 195
Query: 433 TKEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKE 492
+ ++A+ + + +I L +AR P+S+ V +Q+T QE+ D + SP+ ++E
Sbjct: 196 SPTEIAKELELEPAQIREYLNIARQPISLDVRVGDNQDTELQEMLEDDGL-SPEHYTTQE 254
Query: 493 LMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKL 552
+R + NLL+ L P++R ++ LRFG EDG + SL++VG+ +S+ERVRQLE++A L
Sbjct: 255 FLRHDLNNLLAELTPQQREVVTLRFGLEDGNEMSLAKVGDRLNISRERVRQLEHQALTHL 314
Query: 553 KK 554
++
Sbjct: 315 RR 316
>K9EWZ9_9CYAN (tr|K9EWZ9) RNA polymerase sigma factor OS=Leptolyngbya sp. PCC
7375 GN=Lepto7375DRAFT_2556 PE=3 SV=1
Length = 328
Score = 221 bits (563), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 117/305 (38%), Positives = 191/305 (62%), Gaps = 2/305 (0%)
Query: 255 NDPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAG 313
D R +L+ G+ LL EEE L Q+Q L+ L+E K L + G + EW++ AG
Sbjct: 17 TDTVRTYLQEIGRVPLLTHEEEIVLGKQVQCLMALQETKDKLDEELGHDANRVEWSQAAG 76
Query: 314 LKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKF 373
+ L +LR G R++ K+I+ANLR+V+ VAK YQ R L DL+QEG++GL + V+KF
Sbjct: 77 ISETELVHQLRHGERAKRKMIEANLRLVVAVAKKYQKRNLEFLDLIQEGTLGLERGVEKF 136
Query: 374 KPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPT 433
P G +F +YAYWWI+QAI +AI SRTIRLP + +L KI +++ Q+ P+
Sbjct: 137 DPMKGYKFSTYAYWWIRQAITRAIAQQSRTIRLPIHITEKLNKIKREQRVLAQKLGRSPS 196
Query: 434 KEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKEL 493
++ + + ++ +++ L ++R P+S+ + +Q+T QE+ D ++ SP+ ++
Sbjct: 197 VGEIGQELDLTPEQVREYLTMSRQPISLDVRIGDNQDTELQELLEDDTV-SPEDYTVQQS 255
Query: 494 MRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
+R+ + N+L+ L P+++ +I LRFG DG Q SL++VG+ G+S+ERVRQLE +A L+
Sbjct: 256 LRQDIRNMLTELTPQQKEVINLRFGLIDGTQLSLAKVGQRMGISRERVRQLEQQALKHLR 315
Query: 554 KCLAS 558
+ A+
Sbjct: 316 RRKAT 320
>Q4BYC5_CROWT (tr|Q4BYC5) RNA polymerase sigma factor OS=Crocosphaera watsonii WH
8501 GN=CwatDRAFT_1739 PE=3 SV=1
Length = 328
Score = 221 bits (562), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 120/316 (37%), Positives = 194/316 (61%), Gaps = 2/316 (0%)
Query: 244 VKRKINEAFDQNDPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGRE 302
V K + D R +L G+ LL E+E Q+Q ++ E K L + G+E
Sbjct: 6 VNTKTKQPMYSADMVRTYLHEIGRVPLLTHEQEIIYGKQVQKMMNFLEKKEELADKLGKE 65
Query: 303 PTMAEWAEGAGLKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEG 362
PT+ EW++ ++ +AL L G R++ K+I+ANLR+V+ +AK YQ R + DL+QEG
Sbjct: 66 PTVKEWSKELEIEQKALNQALEQGERAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEG 125
Query: 363 SMGLLKSVKKFKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKK 422
S+GL + V+KF P G +F +YAYWWI+QAI +AI SRTIRLP + +L KI + ++
Sbjct: 126 SLGLERGVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQSRTIRLPIHITEKLNKIKKTQR 185
Query: 423 LYIQEGNLRPTKEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSI 482
Q T ++A+ + I +I L +AR P+S+ V +Q+T E+ D +
Sbjct: 186 ELSQTLGRSATPSEIAQELEIEPSQIREFLSIARQPISLDVRVGDNQDTELSELLEDQGV 245
Query: 483 ESPDSSVSKELMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVR 542
SPD +++EL+R+ + NL++ L P++R ++ LRFG EDG++ SL+++G+ +S+ERVR
Sbjct: 246 -SPDLYITQELLRQDLRNLMAELTPQQRTVLTLRFGLEDGKELSLAKIGKRMNISRERVR 304
Query: 543 QLENRAFYKLKKCLAS 558
QLE++A +L++ A+
Sbjct: 305 QLEHQALAQLRRRRAN 320
>D4TH69_9NOST (tr|D4TH69) RNA polymerase sigma factor OS=Cylindrospermopsis
raciborskii CS-505 GN=CRC_02165 PE=3 SV=1
Length = 327
Score = 221 bits (562), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 115/302 (38%), Positives = 190/302 (62%), Gaps = 6/302 (1%)
Query: 256 DPQRLFLRSPGKKLLPIEEESQLIV---QIQDLLKLEELKTSLQSQFGREPTMAEWAEGA 312
D R +LR G+ +P+ Q I+ Q+Q ++ L E+K +L + G EP+++EWA
Sbjct: 18 DMVRTYLREIGR--VPLLNREQEIIYGKQVQQMMLLLEVKEALTKELGYEPSLSEWAIYV 75
Query: 313 GLKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKK 372
L+ K+ G R+++K+I+ANLR+V+ +AK YQ R + DL+QEG++GL + V+K
Sbjct: 76 NQSENDLKHKISTGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEK 135
Query: 373 FKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRP 432
F P +G +F +YAYWWI+QAI +AI RTIRLP + +L KI + ++ Q+ P
Sbjct: 136 FDPTMGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKIKKVQRELAQKLGRSP 195
Query: 433 TKEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKE 492
+ ++A+ + + +I L +AR P+S+ V +Q+T QE+ D + SP+ ++E
Sbjct: 196 SPTEIAKELELEPAQIREYLNIARQPISLDVRVGDNQDTELQEMLEDHGL-SPEHYTTQE 254
Query: 493 LMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKL 552
+R + NLL+ L P++R ++ LRFG EDG + SL++VG+ +S+ERVRQLE++A L
Sbjct: 255 FLRHDLNNLLAELTPQQREVVILRFGLEDGNEMSLAKVGDRLNISRERVRQLEHQALTHL 314
Query: 553 KK 554
++
Sbjct: 315 RR 316
>Q7NHG5_GLOVI (tr|Q7NHG5) RNA polymerase sigma factor OS=Gloeobacter violaceus
(strain PCC 7421) GN=sigA PE=3 SV=1
Length = 400
Score = 221 bits (562), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 120/329 (36%), Positives = 204/329 (62%), Gaps = 33/329 (10%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELK-------TSLQSQF-------- 299
D R++L+ G+ +LL +EE +L QI DLL LE L+ T + S
Sbjct: 61 DSIRVYLQEIGRIRLLRADEEIELARQIADLLTLERLRARMGAAGTDMHSDVADLLGDDD 120
Query: 300 ---------GREPTMAE-----WAEGAGLKCRALQMKLRCGNRSREKLIKANLRMVLHVA 345
G + T +E WAE AG+ + ++ G R+++K++++NLR+V+ +A
Sbjct: 121 LLTENLLASGDQVTESEQELRRWAEAAGIAYEQFRDRIAYGRRAKDKMVQSNLRLVVSIA 180
Query: 346 KTYQGRGLSLQDLLQEGSMGLLKSVKKFKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIR 405
K Y RGLS QDL+QEGS+GL+++ +KF + G +F +YA WWI+QAI +AI SRTIR
Sbjct: 181 KKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIR 240
Query: 406 LPEKVYTQLGKILEAKKLYIQEGNLRPTKEDLARRVGISEDKISSLLYVARIPMSMQQTV 465
LP +Y + +I + KL QE +PT+E++A R+ ++ +K+ + A++P+S++ +
Sbjct: 241 LPVHLYETISRIKKTTKLLSQELGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPI 300
Query: 466 WTDQNTTFQE-ITADTSIESPDSSVSKELMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQ 524
++++ + I AD E+P+ V+K L+R + +L+TL P+ER ++RLR+G +DG
Sbjct: 301 GKEEDSRLGDFIEADG--ETPEDKVAKNLLREDLEAVLNTLSPRERDVLRLRYGLDDGRM 358
Query: 525 KSLSEVGEIFGLSKERVRQLENRAFYKLK 553
K+L E+G++F +++ER+RQ+E +A KL+
Sbjct: 359 KTLEEIGQLFNVTRERIRQIEAKALRKLR 387
>E0UE62_CYAP2 (tr|E0UE62) RNA polymerase sigma factor OS=Cyanothece sp. (strain
PCC 7822) GN=Cyan7822_2208 PE=3 SV=1
Length = 328
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 116/302 (38%), Positives = 190/302 (62%), Gaps = 6/302 (1%)
Query: 256 DPQRLFLRSPGKKLLPIEEESQLIV---QIQDLLKLEELKTSLQSQFGREPTMAEWAEGA 312
D R +L G+ +P+ Q IV Q+Q ++ L E K L Q REP++ EWA
Sbjct: 18 DMVRTYLHEIGR--VPLLTHEQEIVYGKQVQKMMTLLEKKDELAIQLEREPSLTEWANHV 75
Query: 313 GLKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKK 372
+ L ++ G R++ K+I+ANLR+V+ +AK YQ R + DL+QEGS+GL + V+K
Sbjct: 76 QMSEEELNRAIQQGKRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEK 135
Query: 373 FKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRP 432
F P G +F +YAYWWI+QAI +AI +RTIRLP + +L KI + ++ Q+
Sbjct: 136 FDPTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKTQRELSQQLGRSA 195
Query: 433 TKEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKE 492
T ++A+ + + D+I L ++R P+S+ V +Q+T E+ D I SPD+ +++E
Sbjct: 196 TPSEIAKALDLEPDQIREFLSMSRQPISLDVRVGDNQDTELSELLEDEGI-SPDNYITQE 254
Query: 493 LMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKL 552
LMR+ + +LL+ L P++R ++ LRFG +DG++ SL+++G+ +S+ERVRQLE++A +L
Sbjct: 255 LMRQDLQDLLAELTPQQREVLSLRFGLQDGKELSLAKIGQRMNISRERVRQLEHQALSQL 314
Query: 553 KK 554
++
Sbjct: 315 RR 316
>K9RCV1_9CYAN (tr|K9RCV1) RNA polymerase sigma factor OS=Rivularia sp. PCC 7116
GN=Riv7116_3322 PE=3 SV=1
Length = 327
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 123/316 (38%), Positives = 193/316 (61%), Gaps = 3/316 (0%)
Query: 244 VKRKINEAFDQNDPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGRE 302
V K N F D R +LR G+ LL E+E Q+Q ++KL E K +L + GRE
Sbjct: 7 VTEKTNTKFT-ADMVRTYLREIGRVPLLTREQEIIFGKQVQKMMKLVEAKEALAKKLGRE 65
Query: 303 PTMAEWAEGAGLKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEG 362
++ EW + GL L+ + G R+++K+I+ANLR+V+ +AK YQ R + DL+QEG
Sbjct: 66 VSLEEWTQEVGLAETELKKTVLEGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEG 125
Query: 363 SMGLLKSVKKFKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKK 422
++GL + V+KF P G +F +YAYWWI+QAI +AI RTIRLP + +L KI + ++
Sbjct: 126 ALGLERGVEKFDPTRGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKIKKVQR 185
Query: 423 LYIQEGNLRPTKEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSI 482
Q+ P ++A+ + + +I L +AR P+S+ V +Q+T QE+ D
Sbjct: 186 ELAQKLGRSPIPSEIAKELDLEPAQIREYLNMARQPVSLDVRVGDNQDTELQEMLEDDG- 244
Query: 483 ESPDSSVSKELMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVR 542
SP+ ++E +R+ + NLL+ L P++R+++ LRFG DG + SL++VGE LS+ERVR
Sbjct: 245 PSPEYYTTQEFLRQDLNNLLAELTPQQRQVLALRFGLSDGNEMSLAKVGERLSLSRERVR 304
Query: 543 QLENRAFYKLKKCLAS 558
QLE++A L++ A+
Sbjct: 305 QLEHQALAHLRRRRAN 320
>G5JAP6_CROWT (tr|G5JAP6) RNA polymerase sigma factor OS=Crocosphaera watsonii WH
0003 GN=CWATWH0003_4508 PE=3 SV=1
Length = 328
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 119/316 (37%), Positives = 194/316 (61%), Gaps = 2/316 (0%)
Query: 244 VKRKINEAFDQNDPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGRE 302
V K + D R +L G+ LL E+E Q+Q ++ E K L + G+E
Sbjct: 6 VNTKTKQPMYSADMVRTYLHEIGRVPLLTHEQEIIYGKQVQKMMNFLEKKEELADKLGKE 65
Query: 303 PTMAEWAEGAGLKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEG 362
PT+ EW++ ++ +AL L G R++ K+I+ANLR+V+ +AK YQ R + DL+QEG
Sbjct: 66 PTVKEWSKELEIEQKALNQALEQGERAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEG 125
Query: 363 SMGLLKSVKKFKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKK 422
S+GL + V+KF P G +F +YAYWWI+QAI +AI +RTIRLP + +L KI + ++
Sbjct: 126 SLGLERGVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKTQR 185
Query: 423 LYIQEGNLRPTKEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSI 482
Q T ++A+ + I +I L +AR P+S+ V +Q+T E+ D +
Sbjct: 186 ELSQTLGRSATPSEIAQELEIEPSQIREFLSIARQPISLDVRVGDNQDTELSELLEDQGV 245
Query: 483 ESPDSSVSKELMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVR 542
SPD +++EL+R+ + NL++ L P++R ++ LRFG EDG++ SL+++G+ +S+ERVR
Sbjct: 246 -SPDLYITQELLRQDLRNLMAELTPQQRTVLTLRFGLEDGKELSLAKIGKRMNISRERVR 304
Query: 543 QLENRAFYKLKKCLAS 558
QLE++A +L++ A+
Sbjct: 305 QLEHQALAQLRRRRAN 320
>Q017N3_OSTTA (tr|Q017N3) SigA (ISS) OS=Ostreococcus tauri GN=Ot06g01190 PE=4
SV=1
Length = 525
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 113/313 (36%), Positives = 196/313 (62%), Gaps = 4/313 (1%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSL--QSQFGREPTMAEWAEGA 312
D R +L+ G LL +E +L +IQDL+ LE ++ +L ++ G E + ++WA A
Sbjct: 201 DSMRSYLKDIGSVTLLNAGQEVELAKRIQDLMHLESIRENLIEETGPGVELSESQWAAAA 260
Query: 313 GLKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKK 372
GL AL+ +L G ++ ++I+ANLR+V+ +AK Y +S QDL+QEG +GL++ +K
Sbjct: 261 GLNVSALRQRLHDGKAAKNEMIQANLRLVVSIAKKYANTNMSFQDLIQEGCVGLIRGAEK 320
Query: 373 FKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRP 432
F Q G +F +YA+WWI+QA+ ++I SRTIRLP ++ + +I + ++ + P
Sbjct: 321 FDFQRGYKFSTYAHWWIRQAVTRSISDQSRTIRLPVHLFEIISRISKMEQKFALYNGRPP 380
Query: 433 TKEDLARRVGISEDKISSLLYVARIPMSMQQTVWT-DQNTTFQEITADTSIESPDSSVSK 491
T E++A + +S +KI+ + A+ P+S+ QT+ ++ T ++ D + E P+ K
Sbjct: 381 TLEEIASEMEMSVEKITQIKKAAQAPVSLAQTMGGENKGRTIEDTLIDANAEGPEKVSGK 440
Query: 492 ELMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYK 551
L++ + N+L+TL P+ER ++RLR+G +DG K+L E+G +F +++ER+RQ+E +A K
Sbjct: 441 SLLKEDLENVLNTLNPRERDVLRLRYGLDDGRVKTLEEIGTVFSVTRERIRQIEAKALRK 500
Query: 552 LKKCLASQGLDAY 564
LK+ +Q L Y
Sbjct: 501 LKQPSRNQVLQEY 513
>L8LL46_9CHRO (tr|L8LL46) RNA polymerase sigma factor OS=Gloeocapsa sp. PCC 73106
GN=GLO73106DRAFT_00005290 PE=3 SV=1
Length = 328
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 120/300 (40%), Positives = 183/300 (61%), Gaps = 2/300 (0%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D R +L G+ LL E+E Q+Q ++ L E K L Q GRE EWA+ +
Sbjct: 18 DMVRTYLHEIGRVPLLTPEQEISYGKQVQKMMSLIEAKEKLNKQLGREANKQEWAQYVQM 77
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
L+ + G R++ K+I+ANLR+V+ +AK YQ R + DL+QEGS+GL + V+KF
Sbjct: 78 DPEELEKTQQKGQRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFD 137
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
P G +F +YAYWWI+QAI +AI RTIRLP + +L KI ++ Q P+
Sbjct: 138 PTKGFKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKIKRTQRELSQRLGRNPSP 197
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELM 494
++AR + + +I L VAR P+S+ V +Q+T E+ D S+ SPD +++EL+
Sbjct: 198 SEIARELELQPAQIREYLSVARQPISLDVRVGDNQDTELSELLEDDSV-SPDKYITQELL 256
Query: 495 RRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLKK 554
R+ + LL L P+++++I LRFG EDG++ SL+++G+ LS+ERVRQLE++A L+K
Sbjct: 257 RQDLRMLLDELTPQQQQVISLRFGLEDGKEMSLAKIGKQLNLSRERVRQLEHQALAHLRK 316
>K9T8P2_9CYAN (tr|K9T8P2) RNA polymerase sigma factor OS=Pleurocapsa sp. PCC 7327
GN=Ple7327_3573 PE=3 SV=1
Length = 328
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 117/300 (39%), Positives = 189/300 (63%), Gaps = 2/300 (0%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D R +L G+ LL E+E Q+Q ++ L E K L S+ G EP++ EWA L
Sbjct: 18 DMVRTYLHEIGRVPLLTHEQEIVYGKQVQRMMTLLEKKEELASKLGHEPSLTEWANYVQL 77
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
L + GNR++ K+I+ANLR+V+ +AK YQ R + DL+QEGS+GL + V+KF
Sbjct: 78 GEDELNRAIAQGNRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFD 137
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
P G +F +YAYWWI+QAI +AI +RTIRLP + +L KI + ++ Q+ T
Sbjct: 138 PTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKTQRELAQQLGRSATP 197
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELM 494
++A+ + + +I L +AR P+S+ V +Q+T ++ D I SPD+ +++EL+
Sbjct: 198 GEIAQALDLEPAQIREYLSMARQPVSLDVRVGDNQDTELSDLLEDEGI-SPDNYITQELL 256
Query: 495 RRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLKK 554
R+ + NL++ L P++R ++ LRFG EDG++ SL+++G+ +S+ERVRQLE++A +L++
Sbjct: 257 RQDLNNLMAELTPQQREVLSLRFGLEDGKELSLAKIGQRLNISRERVRQLEHQALAQLRR 316
>K9SH00_9CYAN (tr|K9SH00) RNA polymerase sigma factor OS=Pseudanabaena sp. PCC
7367 GN=Pse7367_0768 PE=3 SV=1
Length = 346
Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 123/304 (40%), Positives = 185/304 (60%), Gaps = 2/304 (0%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D R +L GK LL EEE ++Q L++L EL L Q R+PT AEWA+ AGL
Sbjct: 37 DMVRTYLHEIGKIPLLTSEEEIIFGKRVQQLMRLSELYEDLAEQLDRQPTQAEWADKAGL 96
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
L+ +R G RS+ K+I+ANLR+V+ VAK YQ R L L DL+QEG++GL ++V KF
Sbjct: 97 NIEELEQIVRDGTRSKRKMIEANLRLVVSVAKKYQKRNLELLDLVQEGTLGLERAVDKFD 156
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
P G +F +YAYWWI+QAI +AI +RTIRLP + +L KI +A++ Q T
Sbjct: 157 PTKGFKFSTYAYWWIRQAITRAIAQQARTIRLPVHITEKLNKIKKAQRQLSQSLGRVATA 216
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELM 494
++A + + +++ L +AR P+S+ + +Q+T E+ D +SP+S E +
Sbjct: 217 AEIADALKLKPEQVREFLSMARQPVSLDLRIGDNQDTELAELLEDEG-DSPESFALSESL 275
Query: 495 RRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLKK 554
R + LL L PK+R ++ +R+G EDG++ SL+ + + LS+E+VRQLE +A L+K
Sbjct: 276 RDDIAGLLLDLTPKQREVMIMRYGLEDGKEMSLASISKRMELSREQVRQLERQAMDSLRK 335
Query: 555 CLAS 558
A+
Sbjct: 336 RKAA 339
>A3YZH3_9SYNE (tr|A3YZH3) RNA polymerase sigma factor OS=Synechococcus sp. WH
5701 GN=WH5701_12059 PE=3 SV=1
Length = 469
Score = 218 bits (556), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 117/300 (39%), Positives = 197/300 (65%), Gaps = 4/300 (1%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D R++L+ G+ +LL +EE +L +I DLL LEEL + G P EWA +
Sbjct: 159 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLLLEELAGQFEQDNGHYPDNKEWAVLVDM 218
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
+ +L G R++EK++++NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF
Sbjct: 219 PPVKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 278
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
+ G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + K+ QE +PT+
Sbjct: 279 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTE 338
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQE-ITADTSIESPDSSVSKEL 493
E++A + ++ +K+ + A++P+S++ + ++++ + I AD IE+P+ V+K L
Sbjct: 339 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEAD--IENPEQDVAKNL 396
Query: 494 MRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
+R + +L+TL P+ER ++RLR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 397 LREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLR 456
>B2J7M4_NOSP7 (tr|B2J7M4) RNA polymerase sigma factor OS=Nostoc punctiforme
(strain ATCC 29133 / PCC 73102) GN=Npun_R4091 PE=3 SV=1
Length = 327
Score = 218 bits (555), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 119/304 (39%), Positives = 187/304 (61%), Gaps = 2/304 (0%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D R +LR G+ LL E+E Q+Q ++ L + K L + REP M+EWA+
Sbjct: 18 DMVRTYLREIGRVPLLTREQEIVYGKQVQQMMTLIDAKEVLAKKLHREPDMSEWADVVQQ 77
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
+Q + G R+++K+I+ANLR+V+ +AK YQ R + DL+QEG++GL + V+KF
Sbjct: 78 SETEVQQTVAQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFD 137
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
P G +F +YAYWWI+QAI +AI RTIRLP + +L KI + ++ Q PT
Sbjct: 138 PMRGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKIKKVQRELAQTLGRSPTP 197
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELM 494
++A+ + + +I L +AR P+S+ V +Q+T QE+ D+ SP+ ++E +
Sbjct: 198 AEIAKELELEPAQIREYLNMARQPVSLDVKVGDNQDTELQEMLEDSG-PSPEYYTNQEFL 256
Query: 495 RRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLKK 554
R+ + NLL+ L P++R ++ LRFG EDG + SL++VGE LS+ERVRQLE++A L++
Sbjct: 257 RQDLNNLLAELTPQQREVLALRFGLEDGNEMSLAKVGERLNLSRERVRQLEHQALAHLRR 316
Query: 555 CLAS 558
A+
Sbjct: 317 RRAN 320
>L8KU07_9SYNC (tr|L8KU07) RNA polymerase sigma factor OS=Synechocystis sp. PCC
7509 GN=Syn7509DRAFT_00020250 PE=3 SV=1
Length = 327
Score = 218 bits (555), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 119/300 (39%), Positives = 184/300 (61%), Gaps = 2/300 (0%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D R +LR G+ LL E+E Q+Q ++ L E K +L Q REPT EWA +
Sbjct: 18 DMVRTYLREIGRVPLLTREQEIIYGKQVQQMMSLLEAKEALAKQLHREPTSDEWATQVDI 77
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
L ++ G R+++K+I+ANLR+V+ +AK YQ R + DL+QEG+MGL + V+KF
Sbjct: 78 AAAELPETIKRGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTMGLERGVEKFD 137
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
P G +F +YAYWWI+QAI +AI +RTIRLP + +L KI + ++ Q+ P
Sbjct: 138 PMRGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKVQRELAQKLGRSPNA 197
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELM 494
++A + + +I L +AR P+S+ V +Q+T Q++ D SPD +++E +
Sbjct: 198 NEIAIALELEPAQIREYLNLARQPVSLDIRVGDNQDTELQDLLEDDG-PSPDHFMTQEAL 256
Query: 495 RRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLKK 554
R+ + NLL+ L P++R ++ LRFG DG + SL++VGE LS+ERVRQLE++A L++
Sbjct: 257 RQDIDNLLAELTPQQRSVVSLRFGLVDGNELSLAKVGERLNLSRERVRQLEHQALAHLRR 316
>L8M4M2_9CYAN (tr|L8M4M2) RNA polymerase sigma factor OS=Xenococcus sp. PCC 7305
GN=Xen7305DRAFT_00045350 PE=3 SV=1
Length = 328
Score = 218 bits (555), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 122/316 (38%), Positives = 192/316 (60%), Gaps = 11/316 (3%)
Query: 247 KINEAFDQNDPQ-----RLFLRSPGKKLLPIEEESQLIV---QIQDLLKLEELKTSLQSQ 298
KINE + Q R +L G+ +P+ Q IV Q+Q ++ L K+ L+ Q
Sbjct: 5 KINEKTTKTTKQSADMVRSYLHEIGR--VPLLTNEQEIVYGKQVQAMMALLIKKSELEKQ 62
Query: 299 FGREPTMAEWAEGAGLKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDL 358
RE ++ EW+E A + L L+ G R++ K+I+ANLR+V+ +AK YQ R + DL
Sbjct: 63 LEREISLQEWSESAQISEPELNRLLKLGQRAKSKMIEANLRLVVAIAKKYQKRNMEFLDL 122
Query: 359 LQEGSMGLLKSVKKFKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKIL 418
+QEGS+GL + V+KF P G +F +YAYWWI+QAI +AI +RTIRLP + +L KI
Sbjct: 123 IQEGSLGLERGVEKFDPMKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIK 182
Query: 419 EAKKLYIQEGNLRPTKEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITA 478
+ ++ Q+ P ++A + + +I L +AR P+S+ V +Q+T E+
Sbjct: 183 KTQRELSQKLGRNPNPREIAAELELETSQIREYLSIARQPISLDVRVGDNQDTELSELLE 242
Query: 479 DTSIESPDSSVSKELMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSK 538
D I SPD ++EL+R+ + NL++ L P +R +I LRFG EDG++ SL+++G+ LS+
Sbjct: 243 DDGI-SPDKYATQELLRQDLYNLMADLTPPQREVISLRFGLEDGKELSLAKIGQRMSLSR 301
Query: 539 ERVRQLENRAFYKLKK 554
ERVRQLE++A +L++
Sbjct: 302 ERVRQLEHQALAQLRR 317
>K9U8Z9_9CYAN (tr|K9U8Z9) RNA polymerase sigma factor OS=Chroococcidiopsis
thermalis PCC 7203 GN=Chro_5941 PE=3 SV=1
Length = 335
Score = 218 bits (554), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 117/286 (40%), Positives = 179/286 (62%), Gaps = 1/286 (0%)
Query: 269 LLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGLKCRALQMKLRCGNR 328
LL E+E Q+Q ++ L K +L Q REPT+ EWAE L +ALQ +L G +
Sbjct: 39 LLSHEQEIVFGKQVQQMIALVTAKENLAKQLQREPTLQEWAELMHLSDKALQKQLLAGQQ 98
Query: 329 SREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFKPQVGCRFGSYAYWW 388
+++K+I+ANLR+V+ VAK YQ R L DL+QEG++GL + V+KF P G RF +YAYWW
Sbjct: 99 AKQKMIEANLRLVVAVAKKYQKRNLDFLDLIQEGTLGLERGVEKFDPTRGFRFSTYAYWW 158
Query: 389 IKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTKEDLARRVGISEDKI 448
I+Q + +AI SRTIRLP + +L KI ++ Q+ PT ++A + + +++
Sbjct: 159 IRQGVTRAIAQQSRTIRLPIHMTEKLNKIKRTQRELSQKLGRTPTSIEIAEAIDLQPEQV 218
Query: 449 SSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELMRRHVLNLLSTLRPK 508
L +AR P+S++ + +Q+T Q I D + P+S +E +R V N+LS L +
Sbjct: 219 RECLLLARHPISLEARIGDEQDTELQNILQDDGL-LPESYAVRESIRESVQNILSKLPTQ 277
Query: 509 ERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLKK 554
+R I+ LRFG DG + SL+++G+ G+S+ERVRQLE +AF L++
Sbjct: 278 QREILTLRFGLADGNELSLAQIGQRMGISRERVRQLEQQAFSFLRR 323
>A0YXP5_LYNSP (tr|A0YXP5) RNA polymerase sigma factor OS=Lyngbya sp. (strain PCC
8106) GN=L8106_09021 PE=3 SV=1
Length = 333
Score = 218 bits (554), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 118/300 (39%), Positives = 182/300 (60%), Gaps = 2/300 (0%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D R +L G+ LL EEE Q+Q ++K E K L + EP+ EWA L
Sbjct: 24 DTVRTYLHEIGRVPLLTQEEEIHYGKQVQQMMKQLEEKDKLTKKLEHEPSKTEWANEVEL 83
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
L L CG R+++K+I+ANLR+V+ +AK YQ R + DL+QEG++GL + V+KF
Sbjct: 84 TEDELDRILDCGRRAKQKMIEANLRLVVSIAKKYQKRNMEFLDLIQEGTLGLERGVEKFD 143
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
P G +F +YAYWW++QAI +AI + RTIRLP + +L KI ++ +Q+ PT
Sbjct: 144 PMRGYKFSTYAYWWVRQAITRAIAQNGRTIRLPIHITEKLNKIKRVQRDLVQKYGRNPTP 203
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELM 494
++A + + +I L +R P+S+ V +Q+T QE+ D + S D+ V+ EL+
Sbjct: 204 TEIAEALELEPSQIREYLLASRHPISLDLRVGDNQDTELQELLEDETA-SADNYVTHELL 262
Query: 495 RRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLKK 554
R+ + +L+ L P++R +I LR+G EDG++ SLS+VG +S+ERVRQLEN+A L++
Sbjct: 263 RQDLKSLIDELTPQQREVILLRYGLEDGKELSLSKVGARMSISRERVRQLENQALNHLRR 322
>I4GV22_MICAE (tr|I4GV22) RNA polymerase sigma factor OS=Microcystis aeruginosa
PCC 9806 GN=rpoD PE=3 SV=1
Length = 416
Score = 218 bits (554), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 118/339 (34%), Positives = 204/339 (60%), Gaps = 43/339 (12%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQ----SQFGRE-------- 302
D R++L+ G+ +LL EEE +L +I DLLKLE ++ + +++G++
Sbjct: 67 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFRLYSDAEWGKQVFLFERIE 126
Query: 303 ---------------------------PTMAEWAEGAGLKCRALQMKLRCGNRSREKLIK 335
P + EW + A + +L G R++EK+++
Sbjct: 127 KIIAEKSEKEPKLSDIKAYLGKTELMAPMLEEWQAKSKEYLSAFKRRLYHGRRAKEKMVQ 186
Query: 336 ANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFKPQVGCRFGSYAYWWIKQAIRK 395
+NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF + G +F +YA WWI+QAI +
Sbjct: 187 SNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITR 246
Query: 396 AIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTKEDLARRVGISEDKISSLLYVA 455
AI SRTIRLP +Y + +I + K+ QE +PT+E++A ++ ++ +K+ + A
Sbjct: 247 AIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATKMEMTIEKLRFIAKSA 306
Query: 456 RIPMSMQQTVWTDQNTTFQE-ITADTSIESPDSSVSKELMRRHVLNLLSTLRPKERRIIR 514
++P+S++ + ++++ + I AD E+P+ VSK L+R + N+L TL P+ER ++R
Sbjct: 307 QLPISLETPIGKEEDSRLGDFIEADG--ETPEDEVSKNLLREDLENVLDTLSPRERDVLR 364
Query: 515 LRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
LR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 365 LRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 403
>K9TQ38_9CYAN (tr|K9TQ38) RNA polymerase sigma factor OS=Oscillatoria acuminata
PCC 6304 GN=Oscil6304_4611 PE=3 SV=1
Length = 334
Score = 217 bits (553), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 119/307 (38%), Positives = 188/307 (61%), Gaps = 2/307 (0%)
Query: 253 DQNDPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEG 311
D D R +L G+ LL E+E Q+Q ++ E K +L+ + REPT EWAE
Sbjct: 22 DSTDTIRSYLHEIGRVPLLTHEQEIVFGKQVQQMMAFLEAKETLEKKLKREPTEEEWAEA 81
Query: 312 AGLKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVK 371
G L+ ++ G RS++K+I+ANLR+V+ +AK YQ R L DL+QEG++GL + V+
Sbjct: 82 VGHSVGDLKNLVKIGRRSKQKMIEANLRLVVAIAKKYQKRNLEFLDLIQEGTLGLERGVE 141
Query: 372 KFKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLR 431
KF P G +F +YAYWWI+QAI +AI +RTIRLP + +L KI + ++ Q
Sbjct: 142 KFDPMRGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKVQRELTQNLGRS 201
Query: 432 PTKEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSK 491
P+ ++ + + +I L +AR P+S+ V +Q+T Q++ D SP++ +++
Sbjct: 202 PSPSEIGEALELEPAQIREYLLMARQPVSLDLRVGDNQDTELQDLLEDADA-SPENYITQ 260
Query: 492 ELMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYK 551
EL+R + +LL+ L ++R +I LRFG +DG + SL++VGE LS+ERVRQLE++A
Sbjct: 261 ELLREDLESLLAELTTQQRDVIILRFGLKDGRELSLAKVGEKLSLSRERVRQLEHQALAH 320
Query: 552 LKKCLAS 558
L++ A+
Sbjct: 321 LRRRRAN 327
>C7QM79_CYAP0 (tr|C7QM79) RNA polymerase sigma factor OS=Cyanothece sp. (strain
PCC 8802) GN=Cyan8802_3567 PE=3 SV=1
Length = 328
Score = 217 bits (553), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 121/314 (38%), Positives = 190/314 (60%), Gaps = 6/314 (1%)
Query: 244 VKRKINEAFDQNDPQRLFLRSPGKKLLPIEEESQLIV---QIQDLLKLEELKTSLQSQFG 300
V K + D R +L G+ +P+ Q IV Q+Q ++ L E+K L G
Sbjct: 6 VNSKTKQPMYSADMVRTYLHEIGR--VPLLTHEQEIVYGKQVQRMMSLFEMKDQLTQAQG 63
Query: 301 REPTMAEWAEGAGLKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQ 360
EP+ EWA+ LK LQ + GNR++ K+I+ANLR+V+ +AK YQ R + DL+Q
Sbjct: 64 TEPSDKEWAKAVNLKEPELQKTIEQGNRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
Query: 361 EGSMGLLKSVKKFKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEA 420
EGS+GL + V+KF P G +F +YAYWWI+QAI +AI +RTIRLP + +L KI +
Sbjct: 124 EGSLGLERGVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKT 183
Query: 421 KKLYIQEGNLRPTKEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADT 480
++ Q+ T ++A + I +I L +AR P+S+ V +Q+T E+ D
Sbjct: 184 QRELSQKLGRSATPAEIAAVLEIEPSQIRECLSMARQPISLDVRVGDNQDTELSELLEDH 243
Query: 481 SIESPDSSVSKELMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKER 540
SPD +++EL+R+ + NL+ L P++R ++ LRFG EDG++ SL+++G+ +S+ER
Sbjct: 244 EA-SPDQYITQELLRQDLKNLMEELTPQQRSVLILRFGLEDGKELSLAKIGKKLNISRER 302
Query: 541 VRQLENRAFYKLKK 554
VRQLE++A +L++
Sbjct: 303 VRQLEHQALAQLRR 316
>K9YNZ9_CYASC (tr|K9YNZ9) RNA polymerase sigma factor OS=Cyanobacterium stanieri
(strain ATCC 29140 / PCC 7202) GN=Cyast_1868 PE=3 SV=1
Length = 328
Score = 217 bits (553), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 120/315 (38%), Positives = 190/315 (60%), Gaps = 6/315 (1%)
Query: 245 KRKINEAFDQNDPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREP 303
K+K+N D R +L+ GK LL E+E Q+Q ++ L K L REP
Sbjct: 11 KKKVNTV----DMVRTYLQEIGKVPLLSHEQEIVFGKQVQIMMSLYAQKEELAENLDREP 66
Query: 304 TMAEWAEGAGLKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGS 363
T+ EWA+ A L+ + G R+++K+I+ANLR+V+ +AK YQ R + DL+QEGS
Sbjct: 67 TLEEWAQAAEKTPAELKKLIHQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGS 126
Query: 364 MGLLKSVKKFKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKL 423
+GL + V+KF P G +F +YAYWWI+QAI +AI +RTIRLP + +L KI + ++
Sbjct: 127 LGLERGVEKFDPTKGFKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKTQRE 186
Query: 424 YIQEGNLRPTKEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIE 483
Q+ P + ++A + + +I +AR P+S+ V +Q+T E+ D +
Sbjct: 187 LSQKLGRSPNQSEIANALDLEPSQIREYFSIARQPISLDVKVGDNQDTELSELLEDEGL- 245
Query: 484 SPDSSVSKELMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQ 543
SPD +++ELMR+ + LL L +++ ++RLRFG +DG++ SL+++G+ G+S+ERVRQ
Sbjct: 246 SPDKYITQELMRQDLHKLLDELTTQQQEVVRLRFGLDDGKELSLAKIGQRMGISRERVRQ 305
Query: 544 LENRAFYKLKKCLAS 558
LE +A L+K S
Sbjct: 306 LEQQALAHLRKKRGS 320
>H1WB17_9CYAN (tr|H1WB17) RNA polymerase sigma factor OS=Arthrospira sp. PCC 8005
GN=sigB PE=3 SV=1
Length = 332
Score = 217 bits (553), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 114/300 (38%), Positives = 188/300 (62%), Gaps = 2/300 (0%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D R +L G+ LL EEE ++Q ++ L E++ L + R+PT AEW+ AGL
Sbjct: 23 DAVRTYLHEIGRVPLLTREEEIIYGKKVQQMMSLLEMRDELTKELDRDPTAAEWSAKAGL 82
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
+ + G R+++K+I+ANLR+V+ +AK YQ R + DL+QEG++GL + V+KF
Sbjct: 83 SESEMTEIMNRGRRAKQKMIEANLRLVVSIAKKYQKRNMEFLDLIQEGTLGLERGVEKFD 142
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
P G +F +YAYWWI+QAI +AI +SRTIRLP + +L KI + ++ Q+ T
Sbjct: 143 PMRGYKFSTYAYWWIRQAITRAIAQNSRTIRLPIHITEKLNKIKKVQRELFQQYGRNATP 202
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELM 494
++A+ + + +I L +R P+S+ V +Q+T Q++ D S S D+ V+++L+
Sbjct: 203 TEIAKALDLEPSQIRDYLLASRHPVSLDLRVGDNQDTELQDLLEDESA-SADNYVTQQLL 261
Query: 495 RRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLKK 554
R+ + +L++ L P++R ++ LR+G DG++ SLS+VG +S+ERVRQLEN+A L++
Sbjct: 262 RQDLKDLMADLTPQQREVLTLRYGLNDGKEMSLSKVGVHMNISRERVRQLENQALNHLRR 321
>K9V799_9CYAN (tr|K9V799) RNA polymerase sigma factor OS=Calothrix sp. PCC 6303
GN=Cal6303_4417 PE=3 SV=1
Length = 327
Score = 217 bits (553), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 120/304 (39%), Positives = 187/304 (61%), Gaps = 2/304 (0%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D R +LR G+ LL E+E Q+Q ++ L E K +L + REPT+ EWA
Sbjct: 18 DMVRTYLREIGRVPLLTREQEIIFGKQVQQMMILVEAKEALAKKLQREPTLEEWAIQVNQ 77
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
L + + G R+++K+I+ANLR+V+ +AK YQ R + DL+QEG++GL + V+KF
Sbjct: 78 PEAELNLTVHQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFD 137
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
P G +F +YAYWWI+QAI +AI RTIRLP + +L KI + ++ Q+ PT
Sbjct: 138 PTRGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKIKKVQRELAQKLGRSPTP 197
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELM 494
++A+ + + +I L +AR P+S+ V +Q+T QE+ D SP+ ++E +
Sbjct: 198 AEIAKELELEPLQIREYLNMARQPVSLDVRVGDNQDTELQEMLEDDG-PSPEYYTTQEFL 256
Query: 495 RRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLKK 554
R+ + NLL+ L P++R ++ LRFG EDG + SL++VGE LS+ERVRQLE++A L++
Sbjct: 257 RQDLNNLLAELTPQQREVLALRFGLEDGNELSLAKVGERLSLSRERVRQLEHQALAHLRR 316
Query: 555 CLAS 558
A+
Sbjct: 317 RRAN 320
>K9ZCE5_ANACC (tr|K9ZCE5) RNA polymerase sigma factor OS=Anabaena cylindrica
(strain ATCC 27899 / PCC 7122) GN=Anacy_0450 PE=3 SV=1
Length = 327
Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 117/304 (38%), Positives = 186/304 (61%), Gaps = 2/304 (0%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D R +LR G+ LL E+E Q+Q ++ L + K +L + G EP++ EWA
Sbjct: 18 DMVRTYLREIGRVPLLTREQEIVYGKQVQQMMTLLDAKEALSKKLGHEPSLTEWATHVNQ 77
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
+ + G R+++K+I+ANLR+V+ +AK YQ R + DL+QEG++GL + V+KF
Sbjct: 78 SENEVTQTVTQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFD 137
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
P G +F +YAYWWI+QAI +AI RTIRLP + +L KI + ++ Q+ PT
Sbjct: 138 PMRGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKIKKVQRELAQKLGRSPTP 197
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELM 494
++A+ + + +I L +AR P+S+ V +Q+T QE+ D SP+ ++E +
Sbjct: 198 TEIAKELELEPAQIREYLNMARQPVSLDVRVGDNQDTELQEMLEDDG-PSPEYYTTQEFL 256
Query: 495 RRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLKK 554
R+ + NLL+ L P++R ++ LRFG EDG + SL++VGE LS+ERVRQLE++A L++
Sbjct: 257 RQDLNNLLAELTPQQREVVALRFGLEDGNELSLAKVGERLNLSRERVRQLEHQALAHLRR 316
Query: 555 CLAS 558
A+
Sbjct: 317 RRAN 320
>I4IAI2_9CHRO (tr|I4IAI2) RNA polymerase sigma factor OS=Microcystis sp. T1-4
GN=rpoD PE=3 SV=1
Length = 416
Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 118/339 (34%), Positives = 204/339 (60%), Gaps = 43/339 (12%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQ----SQFGRE-------- 302
D R++L+ G+ +LL EEE +L +I DLLKLE ++ + +++G++
Sbjct: 67 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFRLYTDAEWGKQVFLFERIE 126
Query: 303 ---------------------------PTMAEWAEGAGLKCRALQMKLRCGNRSREKLIK 335
P + EW + A + +L G R++EK+++
Sbjct: 127 KIIVEKSEKEPKLSDIKAYLGKTELTAPLVEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQ 186
Query: 336 ANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFKPQVGCRFGSYAYWWIKQAIRK 395
+NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF + G +F +YA WWI+QAI +
Sbjct: 187 SNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITR 246
Query: 396 AIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTKEDLARRVGISEDKISSLLYVA 455
AI SRTIRLP +Y + +I + K+ QE +PT+E++A ++ ++ +K+ + A
Sbjct: 247 AIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATKMEMTIEKLRFIAKSA 306
Query: 456 RIPMSMQQTVWTDQNTTFQE-ITADTSIESPDSSVSKELMRRHVLNLLSTLRPKERRIIR 514
++P+S++ + ++++ + I AD E+P+ VSK L+R + N+L TL P+ER ++R
Sbjct: 307 QLPISLETPIGKEEDSRLGDFIEADG--ETPEDEVSKNLLREDLENVLDTLSPRERDVLR 364
Query: 515 LRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
LR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 365 LRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 403
>M0XE63_HORVD (tr|M0XE63) Uncharacterized protein OS=Hordeum vulgare var.
distichum PE=4 SV=1
Length = 548
Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 106/293 (36%), Positives = 182/293 (62%), Gaps = 1/293 (0%)
Query: 261 FLRSPGKKLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGLKCRALQ 320
F + G+KLL ++E +L IQDLLKLE ++ + G EPT +WA AG L+
Sbjct: 239 FYKMSGRKLLTAKQEVELSEGIQDLLKLEAIQKEVAHYNGGEPTFGQWAAAAGTDENTLR 298
Query: 321 MKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFKPQVGCR 380
+L G + ++K+N+R+V+ +AK ++G G DL+QEG GL++ +KF G R
Sbjct: 299 KRLSDGIYCKNMMVKSNVRLVISIAKEFEGPGTEFSDLIQEGIQGLIRGAEKFDASKGFR 358
Query: 381 FGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTKEDLARR 440
F +Y++WWIKQAIRK++ ++ IRLP + ++ E+++ ++ N PT E++A
Sbjct: 359 FSTYSHWWIKQAIRKSVLEQTQIIRLPAHMAEASSRVKESRRRLRRQLNRLPTNEEIALD 418
Query: 441 VGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELMRRHVLN 500
G++ ++ + + + R +S+ V + T+QEITAD S E+ + ++ + M++ V
Sbjct: 419 TGMTARRVEAAMCLPRYSVSLTGKVGC-TDVTYQEITADKSTETAEETLHRLFMKKDVDK 477
Query: 501 LLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
L +L P+ER +IR RFG +DG+ ++L ++G++ G+S+ER+RQ+E AF KL+
Sbjct: 478 ALDSLTPREREVIRYRFGMDDGKARTLHDIGQLMGVSRERIRQIEMAAFRKLR 530
>I4FLI6_MICAE (tr|I4FLI6) RNA polymerase sigma factor OS=Microcystis aeruginosa
PCC 9717 GN=rpoD PE=3 SV=1
Length = 416
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 118/339 (34%), Positives = 203/339 (59%), Gaps = 43/339 (12%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSL----QSQFGRE-------- 302
D R++L+ G+ +LL EEE +L +I DLLKLE ++ +++G++
Sbjct: 67 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFCLYSDAEWGKQVFLFERIE 126
Query: 303 ---------------------------PTMAEWAEGAGLKCRALQMKLRCGNRSREKLIK 335
P + EW + A + +L G R++EK+++
Sbjct: 127 KIIAEKSEKEPKLSDIKAYLGKTELMAPMLEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQ 186
Query: 336 ANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFKPQVGCRFGSYAYWWIKQAIRK 395
+NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF + G +F +YA WWI+QAI +
Sbjct: 187 SNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITR 246
Query: 396 AIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTKEDLARRVGISEDKISSLLYVA 455
AI SRTIRLP +Y + +I + K+ QE +PT+E++A ++ ++ +K+ + A
Sbjct: 247 AIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATKMEMTIEKLRFIAKSA 306
Query: 456 RIPMSMQQTVWTDQNTTFQE-ITADTSIESPDSSVSKELMRRHVLNLLSTLRPKERRIIR 514
++P+S++ + ++++ + I AD E+P+ VSK L+R + N+L TL P+ER ++R
Sbjct: 307 QLPISLETPIGKEEDSRLGDFIEADG--ETPEDEVSKNLLREDLENVLDTLSPRERDVLR 364
Query: 515 LRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
LR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 365 LRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 403
>I4IUY9_MICAE (tr|I4IUY9) RNA polymerase sigma factor OS=Microcystis aeruginosa
PCC 9701 GN=rpoD PE=3 SV=1
Length = 416
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 118/339 (34%), Positives = 203/339 (59%), Gaps = 43/339 (12%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSL----QSQFGRE-------- 302
D R++L+ G+ +LL EEE +L +I DLLKLE ++ +++G++
Sbjct: 67 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFCLYSDAEWGKQVFLFERIE 126
Query: 303 ---------------------------PTMAEWAEGAGLKCRALQMKLRCGNRSREKLIK 335
P + EW + A + +L G R++EK+++
Sbjct: 127 RIIAEKSEKEPKLSDIKAYLGKTELTAPMVEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQ 186
Query: 336 ANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFKPQVGCRFGSYAYWWIKQAIRK 395
+NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF + G +F +YA WWI+QAI +
Sbjct: 187 SNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITR 246
Query: 396 AIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTKEDLARRVGISEDKISSLLYVA 455
AI SRTIRLP +Y + +I + K+ QE +PT+E++A ++ ++ +K+ + A
Sbjct: 247 AIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATKMEMTIEKLRFIAKSA 306
Query: 456 RIPMSMQQTVWTDQNTTFQE-ITADTSIESPDSSVSKELMRRHVLNLLSTLRPKERRIIR 514
++P+S++ + ++++ + I AD E+P+ VSK L+R + N+L TL P+ER ++R
Sbjct: 307 QLPISLETPIGKEEDSRLGDFIEADG--ETPEDEVSKNLLREDLENVLDTLSPRERDVLR 364
Query: 515 LRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
LR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 365 LRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 403
>B2IZR4_NOSP7 (tr|B2IZR4) RNA polymerase sigma factor OS=Nostoc punctiforme
(strain ATCC 29133 / PCC 73102) GN=Npun_F1499 PE=3 SV=1
Length = 339
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 114/301 (37%), Positives = 184/301 (61%), Gaps = 2/301 (0%)
Query: 255 NDPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAG 313
+D R +L+ G+ LL E+E Q+Q ++ L K L + EPT+ EWA+
Sbjct: 29 DDIVRSYLQEIGRVDLLTREQEVIFAQQVQLMMNLLAAKEELAVKLDHEPTLQEWADRVE 88
Query: 314 LKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKF 373
L L+++L G+++++K+I+ANLR+V+ VAK YQ R L DL+QEG++GL + V KF
Sbjct: 89 LGAEVLELQLSQGHQAKQKMIQANLRLVVAVAKKYQHRNLEFMDLIQEGTLGLERGVDKF 148
Query: 374 KPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPT 433
P +G +F +YAYWWI+Q I +AI RTIRLP V+ +L KI ++ Q+ PT
Sbjct: 149 DPALGYKFSTYAYWWIRQGITRAIAQQGRTIRLPIHVFEKLNKIKRVQRELSQQLGRVPT 208
Query: 434 KEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKEL 493
++A + ++ ++ LY+AR P S++ V Q+T Q+I D SP+ +E
Sbjct: 209 TAEIANALSLTPSQVRECLYLARQPFSLEARVGEQQDTELQDILEDDG-PSPEDYAVEES 267
Query: 494 MRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
+ + + +LL+ L P++R I+ LRFG DG + SL+++G+ G+S+ERVRQ+E +A L+
Sbjct: 268 LHQDLQDLLAKLSPQQREILTLRFGLTDGYELSLAQIGDRMGISRERVRQIEQKALSLLR 327
Query: 554 K 554
+
Sbjct: 328 R 328
>M0XE64_HORVD (tr|M0XE64) Uncharacterized protein OS=Hordeum vulgare var.
distichum PE=4 SV=1
Length = 427
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 106/293 (36%), Positives = 182/293 (62%), Gaps = 1/293 (0%)
Query: 261 FLRSPGKKLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGLKCRALQ 320
F + G+KLL ++E +L IQDLLKLE ++ + G EPT +WA AG L+
Sbjct: 118 FYKMSGRKLLTAKQEVELSEGIQDLLKLEAIQKEVAHYNGGEPTFGQWAAAAGTDENTLR 177
Query: 321 MKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFKPQVGCR 380
+L G + ++K+N+R+V+ +AK ++G G DL+QEG GL++ +KF G R
Sbjct: 178 KRLSDGIYCKNMMVKSNVRLVISIAKEFEGPGTEFSDLIQEGIQGLIRGAEKFDASKGFR 237
Query: 381 FGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTKEDLARR 440
F +Y++WWIKQAIRK++ ++ IRLP + ++ E+++ ++ N PT E++A
Sbjct: 238 FSTYSHWWIKQAIRKSVLEQTQIIRLPAHMAEASSRVKESRRRLRRQLNRLPTNEEIALD 297
Query: 441 VGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELMRRHVLN 500
G++ ++ + + + R +S+ V + T+QEITAD S E+ + ++ + M++ V
Sbjct: 298 TGMTARRVEAAMCLPRYSVSLTGKVGC-TDVTYQEITADKSTETAEETLHRLFMKKDVDK 356
Query: 501 LLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
L +L P+ER +IR RFG +DG+ ++L ++G++ G+S+ER+RQ+E AF KL+
Sbjct: 357 ALDSLTPREREVIRYRFGMDDGKARTLHDIGQLMGVSRERIRQIEMAAFRKLR 409
>I4HZ12_MICAE (tr|I4HZ12) RNA polymerase sigma factor OS=Microcystis aeruginosa
PCC 9808 GN=rpoD PE=3 SV=1
Length = 416
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 118/339 (34%), Positives = 203/339 (59%), Gaps = 43/339 (12%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSL----QSQFGRE-------- 302
D R++L+ G+ +LL EEE +L +I DLLKLE ++ +++G++
Sbjct: 67 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFCLYSDAEWGKQVFLFERIE 126
Query: 303 ---------------------------PTMAEWAEGAGLKCRALQMKLRCGNRSREKLIK 335
P + EW + A + +L G R++EK+++
Sbjct: 127 KIIVEKSEKEPKLSDIKAYLGKTELTAPLLEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQ 186
Query: 336 ANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFKPQVGCRFGSYAYWWIKQAIRK 395
+NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF + G +F +YA WWI+QAI +
Sbjct: 187 SNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITR 246
Query: 396 AIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTKEDLARRVGISEDKISSLLYVA 455
AI SRTIRLP +Y + +I + K+ QE +PT+E++A ++ ++ +K+ + A
Sbjct: 247 AIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATKMEMTIEKLRFIAKSA 306
Query: 456 RIPMSMQQTVWTDQNTTFQE-ITADTSIESPDSSVSKELMRRHVLNLLSTLRPKERRIIR 514
++P+S++ + ++++ + I AD E+P+ VSK L+R + N+L TL P+ER ++R
Sbjct: 307 QLPISLETPIGKEEDSRLGDFIEADG--ETPEDEVSKNLLREDLENVLDTLSPRERDVLR 364
Query: 515 LRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
LR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 365 LRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 403
>I4GN30_MICAE (tr|I4GN30) RNA polymerase sigma factor OS=Microcystis aeruginosa
PCC 7941 GN=rpoD PE=3 SV=1
Length = 416
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 118/339 (34%), Positives = 203/339 (59%), Gaps = 43/339 (12%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSL----QSQFGRE-------- 302
D R++L+ G+ +LL EEE +L +I DLLKLE ++ +++G++
Sbjct: 67 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFCLYSDAEWGKQVFLFERIE 126
Query: 303 ---------------------------PTMAEWAEGAGLKCRALQMKLRCGNRSREKLIK 335
P + EW + A + +L G R++EK+++
Sbjct: 127 KIIVEKSEKEPKLSDIKAYLGKTELTAPLLEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQ 186
Query: 336 ANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFKPQVGCRFGSYAYWWIKQAIRK 395
+NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF + G +F +YA WWI+QAI +
Sbjct: 187 SNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITR 246
Query: 396 AIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTKEDLARRVGISEDKISSLLYVA 455
AI SRTIRLP +Y + +I + K+ QE +PT+E++A ++ ++ +K+ + A
Sbjct: 247 AIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATKMEMTIEKLRFIAKSA 306
Query: 456 RIPMSMQQTVWTDQNTTFQE-ITADTSIESPDSSVSKELMRRHVLNLLSTLRPKERRIIR 514
++P+S++ + ++++ + I AD E+P+ VSK L+R + N+L TL P+ER ++R
Sbjct: 307 QLPISLETPIGKEEDSRLGDFIEADG--ETPEDEVSKNLLREDLENVLDTLSPRERDVLR 364
Query: 515 LRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
LR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 365 LRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 403
>I4GB76_MICAE (tr|I4GB76) RNA polymerase sigma factor OS=Microcystis aeruginosa
PCC 9443 GN=rpoD PE=3 SV=1
Length = 416
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 118/339 (34%), Positives = 203/339 (59%), Gaps = 43/339 (12%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSL----QSQFGRE-------- 302
D R++L+ G+ +LL EEE +L +I DLLKLE ++ +++G++
Sbjct: 67 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFCLYSDAEWGKQVFLFERIE 126
Query: 303 ---------------------------PTMAEWAEGAGLKCRALQMKLRCGNRSREKLIK 335
P + EW + A + +L G R++EK+++
Sbjct: 127 KIIVEKSEKEPKLSDIKAYLGKTELTAPLLEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQ 186
Query: 336 ANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFKPQVGCRFGSYAYWWIKQAIRK 395
+NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF + G +F +YA WWI+QAI +
Sbjct: 187 SNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITR 246
Query: 396 AIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTKEDLARRVGISEDKISSLLYVA 455
AI SRTIRLP +Y + +I + K+ QE +PT+E++A ++ ++ +K+ + A
Sbjct: 247 AIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATKMEMTIEKLRFIAKSA 306
Query: 456 RIPMSMQQTVWTDQNTTFQE-ITADTSIESPDSSVSKELMRRHVLNLLSTLRPKERRIIR 514
++P+S++ + ++++ + I AD E+P+ VSK L+R + N+L TL P+ER ++R
Sbjct: 307 QLPISLETPIGKEEDSRLGDFIEADG--ETPEDEVSKNLLREDLENVLDTLSPRERDVLR 364
Query: 515 LRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
LR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 365 LRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 403
>I4FFA4_MICAE (tr|I4FFA4) RNA polymerase sigma factor OS=Microcystis aeruginosa
PCC 9432 GN=rpoD PE=3 SV=1
Length = 416
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 118/339 (34%), Positives = 203/339 (59%), Gaps = 43/339 (12%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSL----QSQFGRE-------- 302
D R++L+ G+ +LL EEE +L +I DLLKLE ++ +++G++
Sbjct: 67 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFCLYSDAEWGKQVFLFERIE 126
Query: 303 ---------------------------PTMAEWAEGAGLKCRALQMKLRCGNRSREKLIK 335
P + EW + A + +L G R++EK+++
Sbjct: 127 KIIVEKSEKEPKLSDIKAYLGKTELTAPLLEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQ 186
Query: 336 ANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFKPQVGCRFGSYAYWWIKQAIRK 395
+NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF + G +F +YA WWI+QAI +
Sbjct: 187 SNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITR 246
Query: 396 AIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTKEDLARRVGISEDKISSLLYVA 455
AI SRTIRLP +Y + +I + K+ QE +PT+E++A ++ ++ +K+ + A
Sbjct: 247 AIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATKMEMTIEKLRFIAKSA 306
Query: 456 RIPMSMQQTVWTDQNTTFQE-ITADTSIESPDSSVSKELMRRHVLNLLSTLRPKERRIIR 514
++P+S++ + ++++ + I AD E+P+ VSK L+R + N+L TL P+ER ++R
Sbjct: 307 QLPISLETPIGKEEDSRLGDFIEADG--ETPEDEVSKNLLREDLENVLDTLSPRERDVLR 364
Query: 515 LRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
LR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 365 LRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 403
>B1PVV9_MICAE (tr|B1PVV9) RNA polymerase sigma factor OS=Microcystis aeruginosa
PCC 7820 GN=rpoD1 PE=3 SV=1
Length = 416
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 118/339 (34%), Positives = 203/339 (59%), Gaps = 43/339 (12%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSL----QSQFGRE-------- 302
D R++L+ G+ +LL EEE +L +I DLLKLE ++ +++G++
Sbjct: 67 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFCLYSDAEWGKQVFLFERIE 126
Query: 303 ---------------------------PTMAEWAEGAGLKCRALQMKLRCGNRSREKLIK 335
P + EW + A + +L G R++EK+++
Sbjct: 127 KIIVEKSEKEPKLSDIKAYLGKTELTAPLLEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQ 186
Query: 336 ANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFKPQVGCRFGSYAYWWIKQAIRK 395
+NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF + G +F +YA WWI+QAI +
Sbjct: 187 SNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITR 246
Query: 396 AIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTKEDLARRVGISEDKISSLLYVA 455
AI SRTIRLP +Y + +I + K+ QE +PT+E++A ++ ++ +K+ + A
Sbjct: 247 AIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATKMEMTIEKLRFIAKSA 306
Query: 456 RIPMSMQQTVWTDQNTTFQE-ITADTSIESPDSSVSKELMRRHVLNLLSTLRPKERRIIR 514
++P+S++ + ++++ + I AD E+P+ VSK L+R + N+L TL P+ER ++R
Sbjct: 307 QLPISLETPIGKEEDSRLGDFIEADG--ETPEDEVSKNLLREDLENVLDTLSPRERDVLR 364
Query: 515 LRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
LR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 365 LRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 403
>B7K8N4_CYAP7 (tr|B7K8N4) RNA polymerase sigma factor OS=Cyanothece sp. (strain
PCC 7424) GN=PCC7424_2825 PE=3 SV=1
Length = 328
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 114/302 (37%), Positives = 189/302 (62%), Gaps = 6/302 (1%)
Query: 256 DPQRLFLRSPGKKLLPIEEESQLIV---QIQDLLKLEELKTSLQSQFGREPTMAEWAEGA 312
D R +L G+ +P+ Q IV Q+Q ++ L E K L + G+EP + EWA
Sbjct: 18 DMVRTYLHEIGR--VPLLTHEQEIVYGKQVQKMMTLLEKKDQLAIELGKEPNLTEWANQV 75
Query: 313 GLKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKK 372
+ L ++ G R++ K+I+ANLR+V+ +AK YQ R + DL+QEGS+GL + V+K
Sbjct: 76 QMSEEELNRAIQQGKRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEK 135
Query: 373 FKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRP 432
F P G +F +YAYWWI+QAI +AI +RTIRLP + +L KI + ++ Q+
Sbjct: 136 FDPTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKTQRELSQQLGRSA 195
Query: 433 TKEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKE 492
T ++A+ + + +I L ++R P+S+ V +Q+T E+ D I SPD+ +++E
Sbjct: 196 TPAEIAKALDLEPAQIREFLSMSRQPISLDVRVGDNQDTELSELLEDEGI-SPDNYITQE 254
Query: 493 LMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKL 552
LMR+ + +LL+ L P++R ++ LRFG +DG++ SL+++G+ +S+ERVRQLE++A +L
Sbjct: 255 LMRQDLHDLLAELTPQQREVLSLRFGLQDGKELSLAKIGQRMNISRERVRQLEHQALSQL 314
Query: 553 KK 554
++
Sbjct: 315 RR 316
>K1VQH8_SPIPL (tr|K1VQH8) RNA polymerase sigma factor OS=Arthrospira platensis C1
GN=SPLC1_S531030 PE=3 SV=1
Length = 394
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 115/300 (38%), Positives = 186/300 (62%), Gaps = 2/300 (0%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D R +L G+ LL EEE ++Q ++ L E++ L + +PT AEW+ AGL
Sbjct: 85 DAVRTYLHEIGRVPLLTREEEIIYGKKVQQMMSLLEMRDELTKELDHDPTAAEWSAKAGL 144
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
+ + G R+++K+I+ANLR+V+ +AK YQ R + DL+QEG++GL + V+KF
Sbjct: 145 SESEMTEIMNRGRRAKQKMIEANLRLVVSIAKKYQKRNMEFLDLIQEGTLGLERGVEKFD 204
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
P G +F +YAYWWI+QAI +AI +SRTIRLP + +L KI ++ Q+ T
Sbjct: 205 PMRGYKFSTYAYWWIRQAITRAIAQNSRTIRLPIHITEKLNKIKRVQRELFQQYGRNATP 264
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELM 494
++A+ + + +I L +R P+S+ V +Q+T Q++ D S S DS V++EL+
Sbjct: 265 TEIAKALDLEPSQIRDYLLASRHPVSLDLRVGDNQDTELQDLLEDESA-SADSYVTQELL 323
Query: 495 RRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLKK 554
R+ + +L++ L P++R ++ LR+G DG++ SLS+VG +S+ERVRQLEN+A L++
Sbjct: 324 RQDLKDLMADLTPQQREVLTLRYGLNDGKEMSLSKVGVHMNISRERVRQLENQALNHLRR 383
>I4H3L6_MICAE (tr|I4H3L6) RNA polymerase sigma factor OS=Microcystis aeruginosa
PCC 9807 GN=rpoD PE=3 SV=1
Length = 416
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 118/339 (34%), Positives = 203/339 (59%), Gaps = 43/339 (12%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSL----QSQFGRE-------- 302
D R++L+ G+ +LL EEE +L +I DLLKLE ++ +++G++
Sbjct: 67 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFCLYSDAEWGKQVFLFERIE 126
Query: 303 ---------------------------PTMAEWAEGAGLKCRALQMKLRCGNRSREKLIK 335
P + EW + A + +L G R++EK+++
Sbjct: 127 KIIVEKSEKEPKLSDIKAYLGKTELTAPLLEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQ 186
Query: 336 ANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFKPQVGCRFGSYAYWWIKQAIRK 395
+NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF + G +F +YA WWI+QAI +
Sbjct: 187 SNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITR 246
Query: 396 AIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTKEDLARRVGISEDKISSLLYVA 455
AI SRTIRLP +Y + +I + K+ QE +PT+E++A ++ ++ +K+ + A
Sbjct: 247 AIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATKMEMTIEKLRFIAKSA 306
Query: 456 RIPMSMQQTVWTDQNTTFQE-ITADTSIESPDSSVSKELMRRHVLNLLSTLRPKERRIIR 514
++P+S++ + ++++ + I AD E+P+ VSK L+R + N+L TL P+ER ++R
Sbjct: 307 QLPISLETPIGKEEDSRLGDFIEADG--ETPEDEVSKNLLREDLENVLDTLSPRERDVLR 364
Query: 515 LRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
LR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 365 LRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 403
>A8YBI5_MICAE (tr|A8YBI5) RNA polymerase sigma factor OS=Microcystis aeruginosa
PCC 7806 GN=rpoD1 PE=3 SV=1
Length = 416
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 118/339 (34%), Positives = 203/339 (59%), Gaps = 43/339 (12%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSL----QSQFGRE-------- 302
D R++L+ G+ +LL EEE +L +I DLLKLE ++ +++G++
Sbjct: 67 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFCLYSDAEWGKQVFLFERIE 126
Query: 303 ---------------------------PTMAEWAEGAGLKCRALQMKLRCGNRSREKLIK 335
P + EW + A + +L G R++EK+++
Sbjct: 127 KIIVEKSEKEPKLSDIKAYLGKTELTAPLLEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQ 186
Query: 336 ANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFKPQVGCRFGSYAYWWIKQAIRK 395
+NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF + G +F +YA WWI+QAI +
Sbjct: 187 SNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITR 246
Query: 396 AIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTKEDLARRVGISEDKISSLLYVA 455
AI SRTIRLP +Y + +I + K+ QE +PT+E++A ++ ++ +K+ + A
Sbjct: 247 AIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATKMEMTIEKLRFIAKSA 306
Query: 456 RIPMSMQQTVWTDQNTTFQE-ITADTSIESPDSSVSKELMRRHVLNLLSTLRPKERRIIR 514
++P+S++ + ++++ + I AD E+P+ VSK L+R + N+L TL P+ER ++R
Sbjct: 307 QLPISLETPIGKEEDSRLGDFIEADG--ETPEDEVSKNLLREDLENVLDTLSPRERDVLR 364
Query: 515 LRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
LR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 365 LRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 403
>B0JGK3_MICAN (tr|B0JGK3) RNA polymerase sigma factor OS=Microcystis aeruginosa
(strain NIES-843) GN=sigA PE=3 SV=1
Length = 416
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 119/339 (35%), Positives = 203/339 (59%), Gaps = 43/339 (12%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELK---------------------- 292
D R++L+ G+ +LL EEE +L +I DLLKLE ++
Sbjct: 67 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFCLYSDAEWGKQVFLFERIE 126
Query: 293 -------------TSLQSQFGREPTMA----EWAEGAGLKCRALQMKLRCGNRSREKLIK 335
+ +++ G+ MA EW + A + +L G R++EK+++
Sbjct: 127 KIIAEKSEKEPKLSDIKAYLGKTELMAPLVEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQ 186
Query: 336 ANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFKPQVGCRFGSYAYWWIKQAIRK 395
+NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF + G +F +YA WWI+QAI +
Sbjct: 187 SNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITR 246
Query: 396 AIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTKEDLARRVGISEDKISSLLYVA 455
AI SRTIRLP +Y + +I + K+ QE +PT+E++A ++ ++ +K+ + A
Sbjct: 247 AIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATKMEMTIEKLRFIAKSA 306
Query: 456 RIPMSMQQTVWTDQNTTFQE-ITADTSIESPDSSVSKELMRRHVLNLLSTLRPKERRIIR 514
++P+S++ + ++++ + I AD E+P+ VSK L+R + N+L TL P+ER ++R
Sbjct: 307 QLPISLETPIGKEEDSRLGDFIEADG--ETPEDEVSKNLLREDLENVLDTLSPRERDVLR 364
Query: 515 LRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
LR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 365 LRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 403
>I4HLE0_MICAE (tr|I4HLE0) RNA polymerase sigma factor OS=Microcystis aeruginosa
PCC 9809 GN=rpoD PE=3 SV=1
Length = 416
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 119/339 (35%), Positives = 203/339 (59%), Gaps = 43/339 (12%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELK---------------------- 292
D R++L+ G+ +LL EEE +L +I DLLKLE ++
Sbjct: 67 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFCLYSDAEWGKQVFLFERIE 126
Query: 293 -------------TSLQSQFGREPTMA----EWAEGAGLKCRALQMKLRCGNRSREKLIK 335
+ +++ G+ MA EW + A + +L G R++EK+++
Sbjct: 127 KIIAEKSEKEPKLSDIKAYLGKTELMAPLVEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQ 186
Query: 336 ANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFKPQVGCRFGSYAYWWIKQAIRK 395
+NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF + G +F +YA WWI+QAI +
Sbjct: 187 SNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITR 246
Query: 396 AIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTKEDLARRVGISEDKISSLLYVA 455
AI SRTIRLP +Y + +I + K+ QE +PT+E++A ++ ++ +K+ + A
Sbjct: 247 AIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATKMEMTIEKLRFIAKSA 306
Query: 456 RIPMSMQQTVWTDQNTTFQE-ITADTSIESPDSSVSKELMRRHVLNLLSTLRPKERRIIR 514
++P+S++ + ++++ + I AD E+P+ VSK L+R + N+L TL P+ER ++R
Sbjct: 307 QLPISLETPIGKEEDSRLGDFIEADG--ETPEDEVSKNLLREDLENVLDTLSPRERDVLR 364
Query: 515 LRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
LR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 365 LRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 403
>B1WS32_CYAA5 (tr|B1WS32) RNA polymerase sigma factor OS=Cyanothece sp. (strain
ATCC 51142) GN=sigA PE=3 SV=1
Length = 416
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 121/346 (34%), Positives = 206/346 (59%), Gaps = 50/346 (14%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEW------ 308
D R++L+ G+ +LL EEE +L +I DLL+LE ++ +L + +EPT +W
Sbjct: 60 DSIRVYLQEIGRIRLLRAEEEIELARKIADLLQLERIREALWEELDQEPTDEQWGKRIFQ 119
Query: 309 ---------AEGAG---------------------------LKCRA----LQMKLRCGNR 328
A+ A L+ +A + +L G +
Sbjct: 120 WENIEQMLRAQSAKDKDPKWSEVTTMLQQADIISDLEKTWKLESKAYLPKFKRRLYLGRK 179
Query: 329 SREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFKPQVGCRFGSYAYWW 388
+++K++ +NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF + G +F +YA WW
Sbjct: 180 AKDKMVHSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWW 239
Query: 389 IKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTKEDLARRVGISEDKI 448
I+QAI +AI SRTIRLP +Y + +I + KL QE +PT+E++A R+ ++ +K+
Sbjct: 240 IRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMRRKPTEEEIATRMEMTIEKL 299
Query: 449 SSLLYVARIPMSMQQTVWTDQNTTFQE-ITADTSIESPDSSVSKELMRRHVLNLLSTLRP 507
+ A++P+S++ + ++++ + I AD E+P+ VSK L+R + N+L TL P
Sbjct: 300 RFIAKSAQLPISLETPIGKEEDSRLGDFIEADG--ETPEDEVSKNLLREDLENVLDTLSP 357
Query: 508 KERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
+ER ++RLR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 358 RERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 403
>G6GVW3_9CHRO (tr|G6GVW3) RNA polymerase sigma factor OS=Cyanothece sp. ATCC
51472 GN=Cy51472DRAFT_3126 PE=3 SV=1
Length = 416
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 121/346 (34%), Positives = 206/346 (59%), Gaps = 50/346 (14%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEW------ 308
D R++L+ G+ +LL EEE +L +I DLL+LE ++ +L + +EPT +W
Sbjct: 60 DSIRVYLQEIGRIRLLRAEEEIELARKIADLLQLERIREALWEELDQEPTDEQWGKRIFQ 119
Query: 309 ---------AEGAG---------------------------LKCRA----LQMKLRCGNR 328
A+ A L+ +A + +L G +
Sbjct: 120 WENIEQMLRAQSAKDKDPKWSEVTTMLQQADIISDLEKTWKLESKAYLPKFKRRLYLGRK 179
Query: 329 SREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFKPQVGCRFGSYAYWW 388
+++K++ +NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF + G +F +YA WW
Sbjct: 180 AKDKMVHSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWW 239
Query: 389 IKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTKEDLARRVGISEDKI 448
I+QAI +AI SRTIRLP +Y + +I + KL QE +PT+E++A R+ ++ +K+
Sbjct: 240 IRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMRRKPTEEEIATRMEMTIEKL 299
Query: 449 SSLLYVARIPMSMQQTVWTDQNTTFQE-ITADTSIESPDSSVSKELMRRHVLNLLSTLRP 507
+ A++P+S++ + ++++ + I AD E+P+ VSK L+R + N+L TL P
Sbjct: 300 RFIAKSAQLPISLETPIGKEEDSRLGDFIEADG--ETPEDEVSKNLLREDLENVLDTLSP 357
Query: 508 KERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
+ER ++RLR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 358 RERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 403
>B0C249_ACAM1 (tr|B0C249) RNA polymerase sigma factor OS=Acaryochloris marina
(strain MBIC 11017) GN=rpoD PE=3 SV=1
Length = 327
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 118/301 (39%), Positives = 187/301 (62%), Gaps = 2/301 (0%)
Query: 255 NDPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAG 313
D R +L G+ LL EEE Q+Q ++ L +L+ ++ + GREP++ EWAE A
Sbjct: 17 TDMVRTYLHEIGRVPLLTHEEEIVFGKQVQAMMALLDLQKTVMDELGREPSLEEWAEKAN 76
Query: 314 LKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKF 373
L L++ L G ++++K+I+ANLR+V+ VAK YQ R L L DL+QEG++GL + V+KF
Sbjct: 77 LSPSQLELSLHQGQQAKQKMIEANLRLVVSVAKKYQKRNLELLDLIQEGTLGLERGVEKF 136
Query: 374 KPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPT 433
P G +F +YAYWWI+QAI +AI +RTIRLP + +L KI +A++ Q+ T
Sbjct: 137 DPTRGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKAQRELSQKLGRSAT 196
Query: 434 KEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKEL 493
++A + + +I L +AR P+S+ V +Q+T +++ D +SP+ + E
Sbjct: 197 PAEIAEALELEPSQIRDYLTIARQPISLDLRVGDNQDTELRDLLEDDG-QSPEQFTTTEA 255
Query: 494 MRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
+R V LL L P++R ++ LRFG +G++ SL++VG+ LS+ERVRQLE +A L+
Sbjct: 256 LRDDVNQLLKELTPQQRDVLMLRFGLNNGKELSLAKVGQQLSLSRERVRQLERQALDYLR 315
Query: 554 K 554
+
Sbjct: 316 R 316
>L8N2V5_9CYAN (tr|L8N2V5) RNA polymerase sigma factor OS=Pseudanabaena biceps PCC
7429 GN=Pse7429DRAFT_1651 PE=3 SV=1
Length = 394
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 117/305 (38%), Positives = 200/305 (65%), Gaps = 11/305 (3%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFG------REPTMAEW 308
D RL+L+ G+ +LL +EE +L +I DLL+LE + L ++ REP EW
Sbjct: 81 DSIRLYLQEIGRIRLLRADEEIELARKIADLLELELKREELATEADCHPDDVREP---EW 137
Query: 309 AEGAGLKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLK 368
A G+ + +L G R+++K++++NLR+V+ +AK Y RGLS QDL+QEGS+GL++
Sbjct: 138 AIKMGMPLGEFRKRLHSGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIR 197
Query: 369 SVKKFKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEG 428
+ +KF + G +F +YA WWI+QAI +AI SRTIRLP +Y + +I + KL QE
Sbjct: 198 AAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEM 257
Query: 429 NLRPTKEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSS 488
+PT+E++A R+ ++ +K+ + A++P+S++ + ++++ + ++ E+PD
Sbjct: 258 GRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESEGETPDDQ 316
Query: 489 VSKELMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRA 548
V+K L+R + ++L TL P+ER ++RLR+G +DG K+L E+G+IF +++ER+RQ+E +A
Sbjct: 317 VAKSLLREDLESVLGTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKA 376
Query: 549 FYKLK 553
KL+
Sbjct: 377 LRKLR 381
>B7K407_CYAP8 (tr|B7K407) RNA polymerase sigma factor OS=Cyanothece sp. (strain
PCC 8801) GN=PCC8801_2539 PE=3 SV=1
Length = 328
Score = 216 bits (549), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 120/314 (38%), Positives = 190/314 (60%), Gaps = 6/314 (1%)
Query: 244 VKRKINEAFDQNDPQRLFLRSPGKKLLPIEEESQLIV---QIQDLLKLEELKTSLQSQFG 300
V K + D R +L G+ +P+ Q IV Q+Q ++ L E+K L G
Sbjct: 6 VNSKTKQPMYSADMVRTYLHEIGR--VPLLTHEQEIVYGKQVQRMMSLFEMKDQLTQAQG 63
Query: 301 REPTMAEWAEGAGLKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQ 360
EP+ EWA+ LK L+ + GNR++ K+I+ANLR+V+ +AK YQ R + DL+Q
Sbjct: 64 TEPSDKEWAKAVNLKEPELKKTIEQGNRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
Query: 361 EGSMGLLKSVKKFKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEA 420
EGS+GL + V+KF P G +F +YAYWWI+QAI +AI +RTIRLP + +L KI +
Sbjct: 124 EGSLGLERGVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKT 183
Query: 421 KKLYIQEGNLRPTKEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADT 480
++ Q+ T ++A + I +I L +AR P+S+ V +Q+T E+ D
Sbjct: 184 QRELSQKLGRSATPAEIAAVLEIEPSQIRECLSMARQPISLDVRVGDNQDTELSELLEDH 243
Query: 481 SIESPDSSVSKELMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKER 540
SPD +++EL+R+ + NL+ L P++R ++ LRFG EDG++ SL+++G+ +S+ER
Sbjct: 244 EA-SPDQYITQELLRQDLKNLMEELTPQQRSVLILRFGLEDGKELSLAKIGKKLNISRER 302
Query: 541 VRQLENRAFYKLKK 554
VRQLE++A +L++
Sbjct: 303 VRQLEHQALAQLRR 316
>K9TEU2_9CYAN (tr|K9TEU2) RNA polymerase sigma factor, cyanobacterial RpoD-like
family OS=Oscillatoria acuminata PCC 6304
GN=Oscil6304_1212 PE=4 SV=1
Length = 318
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 122/301 (40%), Positives = 179/301 (59%), Gaps = 2/301 (0%)
Query: 255 NDPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAG 313
D R +LR G+ LL E+E L Q+Q L L E+K +L QFG EPT EW++ AG
Sbjct: 8 TDLVRTYLREIGRVPLLTHEQEIVLGKQVQHLSLLHEMKETLTEQFGHEPTDVEWSQAAG 67
Query: 314 LKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKF 373
L LQ + G ++ K+++ANLR+V+ VAK Y R + L DL+QEG++G+ + V+KF
Sbjct: 68 LSLVELQQAIEQGETAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKF 127
Query: 374 KPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPT 433
P G RF +YAYWWI+QAI +AI RTIRLP + +L KI +A + Q+ T
Sbjct: 128 DPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKASRELSQQLGRTAT 187
Query: 434 KEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKEL 493
+LA + +S +I + AR P+S+ V + +T E+ DT SP+ +
Sbjct: 188 IGELAVELELSPKQIREYMERARHPLSLDLRVGDNHDTELSELLEDTG-PSPEDFATHSA 246
Query: 494 MRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
MR + L+S L ++R +I LRFG EDG+ +LS++G+ +S+ERVRQ+E A KL+
Sbjct: 247 MRADLEKLMSELTTQQREVIALRFGLEDGQAMTLSKIGDRLNISRERVRQIEREALTKLR 306
Query: 554 K 554
K
Sbjct: 307 K 307
>K7WMI0_9NOST (tr|K7WMI0) RNA polymerase sigma factor OS=Anabaena sp. 90 GN=sigB
PE=3 SV=1
Length = 327
Score = 215 bits (548), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 120/312 (38%), Positives = 189/312 (60%), Gaps = 3/312 (0%)
Query: 248 INEAFDQNDPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMA 306
+N F D R +LR G+ LL E+E Q+Q ++ L E K +L+ + EP+++
Sbjct: 11 VNAKFTA-DMVRTYLREIGRVPLLSREQEIIYGKQVQQMMALLEAKEALRKEIDHEPSLS 69
Query: 307 EWAEGAGLKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGL 366
EWA L + G R+++K+I+ANLR+V+ +AK YQ R + DL+QEG++GL
Sbjct: 70 EWAARVNQSETELNHLMVQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGL 129
Query: 367 LKSVKKFKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQ 426
+ V+KF P G +F +YAYWWI+QAI +AI RTIRLP + +L KI + ++ Q
Sbjct: 130 ERGVEKFDPMRGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKIKKVQRELAQ 189
Query: 427 EGNLRPTKEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPD 486
PT ++A+ + + +I L +AR P+S+ V +Q+T QE+ D SP+
Sbjct: 190 TLGRSPTPTEIAKELELEPAQIREYLNMARQPVSLDVRVGENQDTELQEMLEDDG-PSPE 248
Query: 487 SSVSKELMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLEN 546
++E +R + NLL+ L P++R+++ LRFG EDG + SL++VGE LS+ERVRQLE+
Sbjct: 249 YYTTQEFLRHDLNNLLAELTPQQRQVVALRFGLEDGNELSLAKVGERLNLSRERVRQLEH 308
Query: 547 RAFYKLKKCLAS 558
+A L++ A+
Sbjct: 309 QALAHLRRRRAN 320
>B4WG00_9SYNE (tr|B4WG00) RNA polymerase sigma factor OS=Synechococcus sp. PCC
7335 GN=S7335_4199 PE=3 SV=1
Length = 319
Score = 215 bits (547), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 113/305 (37%), Positives = 189/305 (61%), Gaps = 4/305 (1%)
Query: 261 FLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGLKCRAL 319
+L+ G+ LL E+E L +Q L+KLE ++ L REPT+AEWAE L AL
Sbjct: 14 YLKGIGRFPLLTHEQEITLGKTVQQLMKLEAIRDDLTETMDREPTLAEWAEATNLSPEAL 73
Query: 320 QMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFKPQVGC 379
+ + G ++++K++++NLR+V+ +AK Y+G L + DL+QEGS+GL + V+KF P G
Sbjct: 74 KKTVEIGQQAKDKMMRSNLRLVVSIAKKYRGSKLDMMDLIQEGSLGLCRGVEKFDPLKGY 133
Query: 380 RFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTKEDLAR 439
RF +YAYWWI+QAI +AI RTIRLP + +L KI +A++ E T ++A
Sbjct: 134 RFSTYAYWWIRQAITRAIADTGRTIRLPIHINEKLSKIRKAQREVSLELGRPATVSEVAE 193
Query: 440 RVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELMRRHVL 499
+V + +K+ L +R+P+S+ + ++QNT + S +SP+ ++ L++R +
Sbjct: 194 KVSLPAEKVRELQRQSRLPLSLNMRIGSEQNTELGALLESDS-QSPEEYATQNLLKRDIG 252
Query: 500 NLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLKKCLASQ 559
LL+ L +++ +I +RFG +DG++K+L+++G +S+ERVRQ+E +A L+ +
Sbjct: 253 QLLARLTERQKDVISMRFGLDDGKKKTLAQIGHDLDISRERVRQIERKALRTLRHT--GR 310
Query: 560 GLDAY 564
GL Y
Sbjct: 311 GLKEY 315
>G6FPH6_9CYAN (tr|G6FPH6) RNA polymerase sigma factor OS=Fischerella sp. JSC-11
GN=FJSC11DRAFT_0756 PE=3 SV=1
Length = 327
Score = 215 bits (547), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 117/304 (38%), Positives = 190/304 (62%), Gaps = 2/304 (0%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D R +LR G+ LL E+E Q+Q ++ L + K +L + REP++ EWA
Sbjct: 18 DMVRTYLREIGRVPLLTREQEIVYGKQVQQMMTLLDAKEALVKKLRREPSLEEWAAHVKK 77
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
++ ++ G R+++K+I+ANLR+V+ +AK YQ R + DL+QEG++GL + V+KF
Sbjct: 78 SESEVKQTVQQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFD 137
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
P G +F +YAYWWI+QAI +AI RTIRLP + +L KI + ++ Q+ P+
Sbjct: 138 PTRGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKIKKVQRELAQKLGRSPSP 197
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELM 494
++A+ + + +I L +AR P+S+ V +Q+T QE+ D +SP+ +++E +
Sbjct: 198 AEIAQELELEPAQIREYLNMARQPVSLDVKVGDNQDTELQEMLEDEG-QSPEYYMTQEFL 256
Query: 495 RRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLKK 554
R+ + NLLS L P++R ++ LRFG EDG + SL++VGE LS+ERVRQLE++A L++
Sbjct: 257 RQDLNNLLSELTPQQREVLALRFGLEDGNEMSLAKVGERLNLSRERVRQLEHQALAHLRR 316
Query: 555 CLAS 558
A+
Sbjct: 317 RRAN 320
>A3ISY9_9CHRO (tr|A3ISY9) RNA polymerase sigma factor OS=Cyanothece sp. CCY0110
GN=CY0110_28844 PE=3 SV=1
Length = 416
Score = 215 bits (547), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 120/346 (34%), Positives = 202/346 (58%), Gaps = 50/346 (14%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWA----- 309
D R++L+ G+ +LL EEE +L +I DLL+LE ++ +L + +EPT +W
Sbjct: 60 DSIRVYLQEIGRIRLLRAEEEIELARKIADLLQLERIREALWEELDQEPTDEQWGKRIFQ 119
Query: 310 -EGAGLKCRA----------------------------------------LQMKLRCGNR 328
E RA + +L G +
Sbjct: 120 WENIEQMLRAQSSKEKEPKWSEVTDMLQKAEIISDLEKTWKLESKAYLPKFKRRLYLGRK 179
Query: 329 SREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFKPQVGCRFGSYAYWW 388
+++K++ +NLR+V+ +AK Y RGLS QDL+QEGS+GL+++ +KF + G +F +YA WW
Sbjct: 180 AKDKMVHSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWW 239
Query: 389 IKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTKEDLARRVGISEDKI 448
I+QAI +AI SRTIRLP +Y + +I + KL QE +PT+E++A R+ ++ +K+
Sbjct: 240 IRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMRRKPTEEEIATRMEMTIEKL 299
Query: 449 SSLLYVARIPMSMQQTVWTDQNTTFQE-ITADTSIESPDSSVSKELMRRHVLNLLSTLRP 507
+ A++P+S++ + ++++ + I AD E+P+ VSK L+R + N+L TL P
Sbjct: 300 RFIAKSAQLPISLETPIGKEEDSRLGDFIEADG--ETPEDEVSKNLLREDLENVLDTLSP 357
Query: 508 KERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
+ER ++RLR+G +DG K+L E+G+IF +++ER+RQ+E +A KL+
Sbjct: 358 RERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 403
>K9WSJ0_9NOST (tr|K9WSJ0) RNA polymerase sigma factor OS=Cylindrospermum stagnale
PCC 7417 GN=Cylst_0837 PE=3 SV=1
Length = 327
Score = 215 bits (547), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 117/304 (38%), Positives = 187/304 (61%), Gaps = 2/304 (0%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
D R +LR G+ LL E+E Q+Q ++ L E K +L + REP++ EWA
Sbjct: 18 DMVRTYLREIGRVPLLTREQEIVFGKQVQHMMTLLEAKEALAKKLRREPSLPEWAADVNQ 77
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
++ + G R+++K+I+ANLR+V+ +AK YQ R + DL+QEG++GL + V+KF
Sbjct: 78 SETDVKQTVTQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFD 137
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
P G +F +YAYWWI+QAI +AI RTIRLP + +L KI + ++ Q+ PT
Sbjct: 138 PTRGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKIKKVQRELAQKLGRSPTP 197
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELM 494
++A+ + + +I L +AR P+S+ V +Q+T Q++ D SP+ ++E +
Sbjct: 198 VEIAKELELEPAQIREYLNMARQPVSLDVRVGDNQDTELQDMLEDDG-PSPEYYTNQEFL 256
Query: 495 RRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLKK 554
R+ + NLL+ L P++R ++ LRFG EDG + SL++VGE LS+ERVRQLE++A L++
Sbjct: 257 RQDLNNLLAELTPQQREVLALRFGLEDGNELSLAKVGERLNLSRERVRQLEHQALAHLRR 316
Query: 555 CLAS 558
A+
Sbjct: 317 RRAN 320
>C7QVB1_CYAP0 (tr|C7QVB1) RNA polymerase, sigma 70 subunit, RpoD subfamily
OS=Cyanothece sp. (strain PCC 8802) GN=Cyan8802_3060
PE=4 SV=1
Length = 318
Score = 214 bits (546), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 116/300 (38%), Positives = 184/300 (61%), Gaps = 2/300 (0%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
DP R +LR G+ LL EEE ++Q + LE LK SL + G+EPT+A+WA+ A +
Sbjct: 9 DPVRAYLREIGRVPLLTHEEEILYAKRVQRFVALETLKESLTEELGQEPTIAQWAKAAKM 68
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
+ L+ + G ++ K+++ANLR+V+ VAK Y R L L DL+QEG++G+ + V+KF
Sbjct: 69 TQKELRSAIEAGEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFD 128
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
P G RF +YAYWWI+QAI +AI SRTIRLP + +L KI +A++ QE T
Sbjct: 129 PTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLSQEKGRAATI 188
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELM 494
+LA + ++ ++ L AR P+S+ V +Q+T ++ DT +SP+ + +
Sbjct: 189 AELAEELELTPRQVREYLERARQPLSLDLRVGDNQDTELGDLLEDTG-QSPEDYATHSSL 247
Query: 495 RRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLKK 554
+ + L+ L P+++ ++ LRFG DG+ +L+++G I +S+ERVRQ+E A KL+K
Sbjct: 248 QLDLDRLMEELTPQQKEVLALRFGLSDGKPLTLAKIGSILNISRERVRQIEREALAKLRK 307
>B7JX54_CYAP8 (tr|B7JX54) RNA polymerase, sigma 70 subunit, RpoD subfamily
OS=Cyanothece sp. (strain PCC 8801) GN=PCC8801_3061 PE=4
SV=1
Length = 318
Score = 214 bits (546), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 116/300 (38%), Positives = 184/300 (61%), Gaps = 2/300 (0%)
Query: 256 DPQRLFLRSPGK-KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGL 314
DP R +LR G+ LL EEE ++Q + LE LK SL + G+EPT+A+WA+ A +
Sbjct: 9 DPVRAYLREIGRVPLLTHEEEILYAKRVQRFVALETLKESLTEELGQEPTIAQWAKAAKM 68
Query: 315 KCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFK 374
+ L+ + G ++ K+++ANLR+V+ VAK Y R L L DL+QEG++G+ + V+KF
Sbjct: 69 TQKELRSAIEAGEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFD 128
Query: 375 PQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTK 434
P G RF +YAYWWI+QAI +AI SRTIRLP + +L KI +A++ QE T
Sbjct: 129 PTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLSQEKGRAATI 188
Query: 435 EDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELM 494
+LA + ++ ++ L AR P+S+ V +Q+T ++ DT +SP+ + +
Sbjct: 189 AELAEELELTPRQVREYLERARQPLSLDLRVGDNQDTELGDLLEDTG-QSPEDYATHSSL 247
Query: 495 RRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLKK 554
+ + L+ L P+++ ++ LRFG DG+ +L+++G I +S+ERVRQ+E A KL+K
Sbjct: 248 QLDLDRLMEELTPQQKEVLALRFGLSDGKPLTLAKIGSILNISRERVRQIEREALAKLRK 307
>K9SDK2_9CYAN (tr|K9SDK2) RNA polymerase sigma factor OS=Geitlerinema sp. PCC
7407 GN=GEI7407_3773 PE=3 SV=1
Length = 365
Score = 214 bits (546), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 112/297 (37%), Positives = 186/297 (62%), Gaps = 1/297 (0%)
Query: 269 LLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGLKCRALQMKLRCGNR 328
LL +EE +L IQ L ++EEL+ + + GR P AE A+ GL R L+ +L
Sbjct: 67 LLKPDEEVELARHIQQLNEIEELRAQFEEEHGRRPNKAELADALGLTERQLEQRLHRSQV 126
Query: 329 SREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFKPQVGCRFGSYAYWW 388
++ K+I++NLR+V+ +AK Y RG+ DL+QEG+MGL ++ +KF P G +F +YAYWW
Sbjct: 127 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWW 186
Query: 389 IKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTKEDLARRVGISEDKI 448
I+Q I + I + +RTIRLP + +L K+ +A++ ++ PT+ +LA + I+E+++
Sbjct: 187 IRQGITRTIANDARTIRLPIHIVEKLNKLKKAQRELRRDLKRPPTEAELATVLEITEEQL 246
Query: 449 SSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELMRRHVLNLLS-TLRP 507
LL V R +S+ V +++T ++ D + SP++ +S+ +MR+ + +LS L
Sbjct: 247 QQLLQVRRQSLSLNVRVGREEDTELVDLLEDNNSRSPEAQMSERMMRQEIAEVLSEVLTE 306
Query: 508 KERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLKKCLASQGLDAY 564
+E+ I+ LR+G E GE +L EVG IF LS+ERVRQ++ RA KL++ ++ L +
Sbjct: 307 REKEIVCLRYGIETGETHTLEEVGNIFNLSRERVRQIQTRAMRKLRRPQVARRLQGW 363