Miyakogusa Predicted Gene

Lj5g3v0539520.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0539520.1 Non Chatacterized Hit- tr|C0JP24|C0JP24_LOTJA
Putative basic helix-loop-helix protein BHLH6 OS=Lotus,46.67,0.000007,
,CUFF.53236.1
         (123 letters)

Database: trembl 
           41,451,118 sequences; 13,208,986,710 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

C0JP24_LOTJA (tr|C0JP24) Putative basic helix-loop-helix protein...    55   1e-05

>C0JP24_LOTJA (tr|C0JP24) Putative basic helix-loop-helix protein BHLH6 OS=Lotus
           japonicus PE=4 SV=1
          Length = 364

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/90 (46%), Positives = 49/90 (54%), Gaps = 7/90 (7%)

Query: 33  STGRKRGRKPRTEVGS---AILREVTEGSRGLDPSIASLQATAER----AGAGGYFTRAT 85
           S  +KR    R+EV S   A L  V EG   L      L+ +A        +GGYFTRA 
Sbjct: 271 SKKQKRRWPSRSEVVSSAGAELLFVPEGGNSLFDVSTPLEVSAPTPSGACSSGGYFTRAK 330

Query: 86  KAWLLGKSVGLRYPGSDEEAIRGLAEELEE 115
           K+ LLGK +GL Y  SD EAIRGL EEL E
Sbjct: 331 KSRLLGKVLGLEYDRSDLEAIRGLEEELRE 360