Miyakogusa Predicted Gene

Lj4g3v3014900.1
Show Alignment: 

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v3014900.1 Non Chatacterized Hit- tr|E1ZK35|E1ZK35_CHLVA
Putative uncharacterized protein OS=Chlorella
variabil,34.05,1e-17,PseudoU_synth_1,Pseudouridine synthase I, TruA,
alpha/beta domain; no description,Pseudouridine synt,CUFF.52095.1
         (390 letters)

Database: trembl 
           41,451,118 sequences; 13,208,986,710 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

I1KPQ1_SOYBN (tr|I1KPQ1) tRNA pseudouridine synthase OS=Glycine ...   596   e-168
I3SYJ2_MEDTR (tr|I3SYJ2) tRNA pseudouridine synthase OS=Medicago...   540   e-151
G7LIU9_MEDTR (tr|G7LIU9) tRNA pseudouridine synthase OS=Medicago...   539   e-151
K7KRU2_SOYBN (tr|K7KRU2) tRNA pseudouridine synthase OS=Glycine ...   521   e-145
F6HT31_VITVI (tr|F6HT31) tRNA pseudouridine synthase OS=Vitis vi...   474   e-131
B9SDU2_RICCO (tr|B9SDU2) tRNA pseudouridine synthase OS=Ricinus ...   457   e-126
B9N838_POPTR (tr|B9N838) tRNA pseudouridine synthase OS=Populus ...   455   e-125
M5XEM7_PRUPE (tr|M5XEM7) Uncharacterized protein OS=Prunus persi...   437   e-120
R0F4N3_9BRAS (tr|R0F4N3) Uncharacterized protein OS=Capsella rub...   426   e-116
D7MHR9_ARALL (tr|D7MHR9) tRNA pseudouridine synthase OS=Arabidop...   419   e-115
Q8GUL5_ARATH (tr|Q8GUL5) tRNA pseudouridine synthase OS=Arabidop...   414   e-113
I1GVV0_BRADI (tr|I1GVV0) tRNA pseudouridine synthase OS=Brachypo...   409   e-111
M4F387_BRARP (tr|M4F387) tRNA pseudouridine synthase OS=Brassica...   406   e-111
M0VMG5_HORVD (tr|M0VMG5) tRNA pseudouridine synthase OS=Hordeum ...   406   e-111
K3XX61_SETIT (tr|K3XX61) tRNA pseudouridine synthase OS=Setaria ...   401   e-109
I1Q4D2_ORYGL (tr|I1Q4D2) tRNA pseudouridine synthase OS=Oryza gl...   397   e-108
Q654A2_ORYSJ (tr|Q654A2) tRNA pseudouridine synthase OS=Oryza sa...   397   e-108
A3BEB6_ORYSJ (tr|A3BEB6) tRNA pseudouridine synthase OS=Oryza sa...   396   e-108
A2YFW6_ORYSI (tr|A2YFW6) tRNA pseudouridine synthase OS=Oryza sa...   396   e-108
J3MGK7_ORYBR (tr|J3MGK7) tRNA pseudouridine synthase OS=Oryza br...   396   e-108
F4JZU2_ARATH (tr|F4JZU2) tRNA pseudouridine synthase OS=Arabidop...   390   e-106
K7UHY3_MAIZE (tr|K7UHY3) tRNA pseudouridine synthase OS=Zea mays...   390   e-106
B4FNC8_MAIZE (tr|B4FNC8) tRNA pseudouridine synthase OS=Zea mays...   390   e-106
I1GVU9_BRADI (tr|I1GVU9) tRNA pseudouridine synthase OS=Brachypo...   384   e-104
M8B639_AEGTA (tr|M8B639) Protein kinase APK1B, chloroplastic OS=...   369   1e-99
D5AA47_PICSI (tr|D5AA47) tRNA pseudouridine synthase OS=Picea si...   359   1e-96
M0SIE3_MUSAM (tr|M0SIE3) Uncharacterized protein OS=Musa acumina...   341   3e-91
O65241_ARATH (tr|O65241) tRNA pseudouridine synthase OS=Arabidop...   304   3e-80
C5Z7C1_SORBI (tr|C5Z7C1) tRNA pseudouridine synthase OS=Sorghum ...   274   4e-71
D8SHG0_SELML (tr|D8SHG0) tRNA pseudouridine synthase (Fragment) ...   263   8e-68
D8T5Q5_SELML (tr|D8T5Q5) tRNA pseudouridine synthase (Fragment) ...   263   9e-68
M0VMG2_HORVD (tr|M0VMG2) tRNA pseudouridine synthase OS=Hordeum ...   216   9e-54
K4CCE3_SOLLC (tr|K4CCE3) tRNA pseudouridine synthase OS=Solanum ...   211   5e-52
M1AKJ9_SOLTU (tr|M1AKJ9) tRNA pseudouridine synthase OS=Solanum ...   204   3e-50
F2CQJ3_HORVD (tr|F2CQJ3) Predicted protein (Fragment) OS=Hordeum...   199   1e-48
M0VMG4_HORVD (tr|M0VMG4) Uncharacterized protein OS=Hordeum vulg...   197   7e-48
K4CCE2_SOLLC (tr|K4CCE2) Uncharacterized protein OS=Solanum lyco...   167   8e-39
Q0DAC1_ORYSJ (tr|Q0DAC1) Os06g0663100 protein OS=Oryza sativa su...   138   4e-30
B4FE12_MAIZE (tr|B4FE12) Pseudouridylate synthase isoform 1 OS=Z...   128   3e-27
K7UYR6_MAIZE (tr|K7UYR6) Uncharacterized protein OS=Zea mays GN=...   128   4e-27
C1FFR9_MICSR (tr|C1FFR9) Predicted protein OS=Micromonas sp. (st...   124   8e-26
C1N1T3_MICPC (tr|C1N1T3) Predicted protein OS=Micromonas pusilla...   121   5e-25
M0VMG6_HORVD (tr|M0VMG6) Uncharacterized protein OS=Hordeum vulg...   116   1e-23
I0YPD2_9CHLO (tr|I0YPD2) tRNA pseudouridine synthase (Fragment) ...   107   6e-21
B8C9R0_THAPS (tr|B8C9R0) Predicted protein OS=Thalassiosira pseu...   106   1e-20
K0TH32_THAOC (tr|K0TH32) Uncharacterized protein OS=Thalassiosir...   105   4e-20
A4RZ76_OSTLU (tr|A4RZ76) Predicted protein OS=Ostreococcus lucim...   103   1e-19
E1ZK35_CHLVA (tr|E1ZK35) Putative uncharacterized protein OS=Chl...    96   2e-17
L1IR33_GUITH (tr|L1IR33) Uncharacterized protein OS=Guillardia t...    89   3e-15
I6X3U9_PROPF (tr|I6X3U9) tRNA pseudouridine synthase A OS=Propio...    89   4e-15
D1AG36_SEBTE (tr|D1AG36) tRNA pseudouridine synthase A OS=Sebald...    85   6e-14
E8R650_ISOPI (tr|E8R650) tRNA pseudouridine synthase A OS=Isosph...    81   9e-13
C7ND49_LEPBD (tr|C7ND49) tRNA pseudouridine synthase A OS=Leptot...    77   2e-11
K8EEF4_9CHLO (tr|K8EEF4) Uncharacterized protein OS=Bathycoccus ...    76   2e-11
Q40J31_EHRCH (tr|Q40J31) tRNA pseudouridine synthase A OS=Ehrlic...    76   2e-11
D0GPD4_9FUSO (tr|D0GPD4) tRNA pseudouridine synthase A OS=Leptot...    76   3e-11
R5BED7_9BACT (tr|R5BED7) tRNA pseudouridine synthase A OS=Alisti...    75   3e-11
G7V946_THELD (tr|G7V946) tRNA pseudouridine synthase A OS=Thermo...    75   4e-11
F9DIR8_9BACT (tr|F9DIR8) tRNA pseudouridine synthase A OS=Prevot...    75   6e-11
I0TCG1_9BACT (tr|I0TCG1) tRNA pseudouridine synthase A OS=Prevot...    75   6e-11
A7HCM5_ANADF (tr|A7HCM5) tRNA pseudouridine synthase A OS=Anaero...    75   6e-11
R5G6H8_9FIRM (tr|R5G6H8) tRNA pseudouridine synthase A 1 OS=Copr...    74   6e-11
F7XVR9_MIDMI (tr|F7XVR9) tRNA pseudouridine synthase A OS=Midich...    74   1e-10
A8SNL4_9FIRM (tr|A8SNL4) tRNA pseudouridine synthase A OS=Parvim...    74   1e-10
R5IVS9_9FIRM (tr|R5IVS9) tRNA pseudouridine synthase A OS=Firmic...    74   1e-10
D5MF74_9BACT (tr|D5MF74) tRNA pseudouridine synthase A OS=Candid...    74   1e-10
C0QUR7_PERMH (tr|C0QUR7) tRNA pseudouridine synthase A OS=Persep...    73   1e-10
B5JG47_9BACT (tr|B5JG47) tRNA pseudouridine synthase A OS=Verruc...    73   1e-10
B4S8J0_PROA2 (tr|B4S8J0) tRNA pseudouridine synthase A OS=Prosth...    73   2e-10
R7JZF3_9CLOT (tr|R7JZF3) tRNA pseudouridine synthase A 1 OS=Clos...    73   2e-10
D8PHD2_9BACT (tr|D8PHD2) tRNA pseudouridine synthase A OS=Candid...    73   2e-10
E2SG52_9ACTO (tr|E2SG52) tRNA pseudouridine synthase A OS=Aeromi...    73   2e-10
R6HEN3_9FIRM (tr|R6HEN3) tRNA pseudouridine synthase A OS=Phasco...    73   2e-10
F5TCB7_9FIRM (tr|F5TCB7) tRNA pseudouridine synthase OS=Parvimon...    73   2e-10
D5SSD7_PLAL2 (tr|D5SSD7) tRNA pseudouridine synthase A OS=Planct...    72   3e-10
C9MQV8_9BACT (tr|C9MQV8) tRNA pseudouridine synthase A OS=Prevot...    72   3e-10
R7LMS2_9CLOT (tr|R7LMS2) tRNA pseudouridine synthase A OS=Clostr...    72   3e-10
R7AYD0_9FIRM (tr|R7AYD0) tRNA pseudouridine synthase A OS=Firmic...    72   3e-10
A3IQ30_9CHRO (tr|A3IQ30) tRNA pseudouridine synthase A OS=Cyanot...    72   4e-10
R6H4K3_9CLOT (tr|R6H4K3) tRNA pseudouridine synthase A 2 OS=Clos...    72   5e-10
C9N0X3_9FUSO (tr|C9N0X3) tRNA pseudouridine synthase A OS=Leptot...    72   5e-10
D4JDM8_9FIRM (tr|D4JDM8) tRNA pseudouridine synthase A OS=[Eubac...    71   5e-10
A4U350_9PROT (tr|A4U350) tRNA pseudouridine synthase A OS=Magnet...    71   6e-10
M4RDW6_9BIFI (tr|M4RDW6) tRNA pseudouridine synthase A OS=Bifido...    71   8e-10
D1C2N5_SPHTD (tr|D1C2N5) tRNA pseudouridine synthase A OS=Sphaer...    71   8e-10
R7JJD5_9BACT (tr|R7JJD5) tRNA pseudouridine synthase A OS=Alisti...    71   8e-10
I7JAI4_9RICK (tr|I7JAI4) tRNA pseudouridine synthase A OS=Wolbac...    71   9e-10
G2SIB1_RHOMR (tr|G2SIB1) tRNA pseudouridine synthase A OS=Rhodot...    71   9e-10
G9PW72_9BACT (tr|G9PW72) tRNA pseudouridine synthase A OS=Synerg...    70   1e-09
C9R8G0_AMMDK (tr|C9R8G0) tRNA pseudouridine synthase A OS=Ammoni...    70   1e-09
F2JSF8_CELLD (tr|F2JSF8) tRNA pseudouridine synthase A OS=Cellul...    70   1e-09
B0MSW4_9BACT (tr|B0MSW4) tRNA pseudouridine synthase A OS=Alisti...    70   1e-09
R6GWK3_9FIRM (tr|R6GWK3) tRNA pseudouridine synthase A OS=Firmic...    70   1e-09
E3H678_ILYPC (tr|E3H678) tRNA pseudouridine synthase A OS=Ilyoba...    70   1e-09
I3DGM8_9FUSO (tr|I3DGM8) tRNA pseudouridine synthase A OS=Fusoba...    70   1e-09
B1WQT7_CYAA5 (tr|B1WQT7) tRNA pseudouridine synthase A OS=Cyanot...    70   1e-09
G6GPE9_9CHRO (tr|G6GPE9) tRNA pseudouridine synthase A OS=Cyanot...    70   1e-09
E1KTU2_9BACT (tr|E1KTU2) tRNA pseudouridine synthase A OS=Prevot...    70   1e-09
E7ACU3_HELFC (tr|E7ACU3) tRNA pseudouridine synthase A OS=Helico...    70   1e-09
B3QNY5_CHLP8 (tr|B3QNY5) tRNA pseudouridine synthase A OS=Chloro...    70   2e-09
A6C4N8_9PLAN (tr|A6C4N8) tRNA pseudouridine synthase A OS=Planct...    70   2e-09
F0RSJ5_SPHGB (tr|F0RSJ5) tRNA pseudouridine synthase A OS=Sphaer...    70   2e-09
F9PQE1_9FIRM (tr|F9PQE1) tRNA pseudouridine synthase A OS=Parvim...    70   2e-09
R5TDT0_9CLOT (tr|R5TDT0) tRNA pseudouridine synthase A OS=Clostr...    70   2e-09
I3YRA3_ALIFI (tr|I3YRA3) tRNA pseudouridine synthase A OS=Alisti...    69   2e-09
L8DKP4_9NOCA (tr|L8DKP4) tRNA pseudouridine synthase A OS=Rhodoc...    69   2e-09
I4EJ07_9CHLR (tr|I4EJ07) tRNA pseudouridine synthase A OS=Nitrol...    69   2e-09
E4MD25_9BACT (tr|E4MD25) tRNA pseudouridine synthase A OS=Alisti...    69   2e-09
B6B8U3_9RHOB (tr|B6B8U3) tRNA pseudouridine synthase A OS=Rhodob...    69   2e-09
R5XB99_9CLOT (tr|R5XB99) tRNA pseudouridine synthase A 1 OS=Clos...    69   3e-09
M5J7N7_9LACO (tr|M5J7N7) tRNA pseudouridine synthase OS=Lactobac...    69   3e-09
K9EWN2_9CYAN (tr|K9EWN2) tRNA pseudouridine synthase A OS=Leptol...    69   3e-09
J9GBR9_9ZZZZ (tr|J9GBR9) tRNA pseudouridine synthase A (Fragment...    69   3e-09
G2ED72_9FLAO (tr|G2ED72) tRNA pseudouridine synthase A OS=Bizion...    69   3e-09
E3ERA5_BIFBS (tr|E3ERA5) tRNA pseudouridine synthase A OS=Bifido...    69   3e-09
R5UF28_9BACT (tr|R5UF28) tRNA pseudouridine synthase A OS=Alisti...    69   3e-09
I4ZAV1_9BACT (tr|I4ZAV1) tRNA pseudouridine synthase A OS=Prevot...    69   3e-09
D1XYC0_9BACT (tr|D1XYC0) tRNA pseudouridine synthase A OS=Prevot...    69   3e-09
H1BNT2_9FIRM (tr|H1BNT2) tRNA pseudouridine synthase A OS=Eubact...    69   3e-09
D6HS44_9FIRM (tr|D6HS44) tRNA pseudouridine synthase A OS=Erysip...    69   3e-09
N1ZLC8_9LACO (tr|N1ZLC8) tRNA pseudouridine synthase A OS=Lactob...    69   3e-09
F2MKK7_LACCD (tr|F2MKK7) tRNA pseudouridine synthase A OS=Lactob...    69   3e-09
F2MC17_LACCC (tr|F2MC17) tRNA pseudouridine synthase A OS=Lactob...    69   3e-09
D8GCI2_LACCZ (tr|D8GCI2) tRNA pseudouridine synthase A OS=Lactob...    69   3e-09
B3EQM8_CHLPB (tr|B3EQM8) tRNA pseudouridine synthase A OS=Chloro...    69   3e-09
R8ZUA2_9LEPT (tr|R8ZUA2) tRNA pseudouridine(38-40) synthase OS=L...    69   4e-09
D5ARE1_RHOCB (tr|D5ARE1) tRNA pseudouridine synthase A OS=Rhodob...    69   4e-09
J4UAW8_9FIRM (tr|J4UAW8) tRNA pseudouridine synthase A OS=Eubact...    69   4e-09
D2R418_PIRSD (tr|D2R418) tRNA pseudouridine synthase A OS=Pirell...    69   4e-09
I0FBE1_BORCA (tr|I0FBE1) tRNA pseudouridine synthase A OS=Borrel...    69   4e-09
E8WYA8_ACISM (tr|E8WYA8) tRNA pseudouridine synthase A OS=Acidob...    69   4e-09
C1DWJ7_SULAA (tr|C1DWJ7) tRNA pseudouridine synthase A OS=Sulfur...    69   4e-09
K6R823_LACCA (tr|K6R823) tRNA pseudouridine synthase A OS=Lactob...    68   5e-09
E4NZ31_BIFBP (tr|E4NZ31) tRNA pseudouridine synthase A OS=Bifido...    68   5e-09
K2IRF8_BIFBI (tr|K2IRF8) tRNA pseudouridine synthase A OS=Bifido...    68   5e-09
E0QJU7_9FIRM (tr|E0QJU7) tRNA pseudouridine synthase A OS=Eubact...    68   5e-09
E3GGZ0_EUBLK (tr|E3GGZ0) tRNA pseudouridine synthase A OS=Eubact...    68   5e-09
D8IMD1_LACSC (tr|D8IMD1) tRNA pseudouridine synthase A OS=Lactob...    68   5e-09
C7TM62_LACRL (tr|C7TM62) tRNA pseudouridine synthase A OS=Lactob...    68   5e-09
G7UYT6_LACRH (tr|G7UYT6) tRNA pseudouridine synthase A OS=Lactob...    68   5e-09
E1JMM5_9LACO (tr|E1JMM5) tRNA pseudouridine synthase A OS=Lactob...    68   5e-09
R5LA20_9SPIR (tr|R5LA20) tRNA pseudouridine synthase A OS=Brachy...    68   5e-09
C2EHF2_9LACO (tr|C2EHF2) tRNA pseudouridine synthase A OS=Lactob...    68   5e-09
E7NVA1_TREPH (tr|E7NVA1) tRNA pseudouridine synthase A OS=Trepon...    68   6e-09
I3WJN9_BIFBI (tr|I3WJN9) tRNA pseudouridine synthase A OS=Bifido...    68   6e-09
J4VU16_9FUSO (tr|J4VU16) tRNA pseudouridine synthase A OS=Fusoba...    68   6e-09
E5BNB6_9FUSO (tr|E5BNB6) tRNA pseudouridine synthase A OS=Fusoba...    68   6e-09
F2KYJ5_PREDF (tr|F2KYJ5) tRNA pseudouridine synthase A OS=Prevot...    68   6e-09
G5J7Y7_CROWT (tr|G5J7Y7) tRNA pseudouridine synthase A OS=Crocos...    68   6e-09
H7FX09_9LACO (tr|H7FX09) tRNA pseudouridine synthase A OS=Lactob...    68   6e-09
F7QTS2_9LACO (tr|F7QTS2) tRNA pseudouridine synthase A OS=Lactob...    68   6e-09
F5VCV6_9LACO (tr|F5VCV6) tRNA pseudouridine synthase A OS=Lactob...    68   6e-09
R7FJ93_9CLOT (tr|R7FJ93) tRNA pseudouridine synthase A OS=Clostr...    68   6e-09
D9SRS8_CLOC7 (tr|D9SRS8) tRNA pseudouridine synthase A OS=Clostr...    68   6e-09
R6GIX4_9BIFI (tr|R6GIX4) tRNA pseudouridine synthase A OS=Bifido...    68   6e-09
Q4C146_CROWT (tr|Q4C146) tRNA pseudouridine synthase A OS=Crocos...    68   6e-09
F7YYT8_9THEM (tr|F7YYT8) tRNA pseudouridine synthase A OS=Thermo...    68   6e-09
K7MW02_SOYBN (tr|K7MW02) tRNA pseudouridine synthase OS=Glycine ...    68   6e-09
H1DC39_9FUSO (tr|H1DC39) tRNA pseudouridine synthase OS=Fusobact...    68   6e-09
A8UHK6_9FLAO (tr|A8UHK6) tRNA pseudouridine synthase A OS=Flavob...    68   7e-09
R7AUT6_9FIRM (tr|R7AUT6) tRNA pseudouridine synthase A 1 OS=Firm...    68   7e-09
A3SYP3_9RHOB (tr|A3SYP3) tRNA pseudouridine synthase A OS=Sulfit...    68   7e-09
A3SF68_9RHOB (tr|A3SF68) tRNA pseudouridine synthase A OS=Sulfit...    68   7e-09
A0LIV1_SYNFM (tr|A0LIV1) tRNA pseudouridine synthase A OS=Syntro...    68   7e-09
E4VBQ6_BIFBI (tr|E4VBQ6) tRNA pseudouridine synthase A OS=Bifido...    68   7e-09
E1NE17_9BIFI (tr|E1NE17) tRNA pseudouridine synthase A OS=Bifido...    68   8e-09
Q2II39_ANADE (tr|Q2II39) tRNA pseudouridine synthase A OS=Anaero...    68   8e-09
F7ZCI6_ROSLO (tr|F7ZCI6) tRNA pseudouridine synthase A OS=Roseob...    67   8e-09
R0EPF5_PEDAC (tr|R0EPF5) tRNA pseudouridine(38-40) synthase, tru...    67   8e-09
G6IRS9_PEDAC (tr|G6IRS9) tRNA pseudouridine synthase A OS=Pedioc...    67   8e-09
E0NFB7_PEDAC (tr|E0NFB7) tRNA pseudouridine synthase A OS=Pedioc...    67   8e-09
D2EKH4_PEDAC (tr|D2EKH4) tRNA pseudouridine synthase A OS=Pedioc...    67   8e-09
F5YEX5_TREAZ (tr|F5YEX5) tRNA pseudouridine synthase A OS=Trepon...    67   8e-09
I7L197_METBM (tr|I7L197) tRNA pseudouridine synthase A OS=Methan...    67   8e-09
D0MFA8_RHOM4 (tr|D0MFA8) tRNA pseudouridine synthase A OS=Rhodot...    67   9e-09
G8NZ09_GRAMM (tr|G8NZ09) tRNA pseudouridine synthase A OS=Granul...    67   9e-09
R6WGM6_9FIRM (tr|R6WGM6) tRNA pseudouridine synthase A OS=Phasco...    67   9e-09
H1Q0M8_9BACT (tr|H1Q0M8) tRNA pseudouridine synthase A OS=Prevot...    67   9e-09
C7XVU2_9LACO (tr|C7XVU2) tRNA pseudouridine synthase A OS=Lactob...    67   9e-09
D3EQH7_UCYNA (tr|D3EQH7) tRNA pseudouridine synthase A OS=cyanob...    67   9e-09
B4UEH8_ANASK (tr|B4UEH8) tRNA pseudouridine synthase A OS=Anaero...    67   1e-08
G8M2D7_CLOCD (tr|G8M2D7) tRNA pseudouridine synthase A OS=Clostr...    67   1e-08
R6MZR5_9CLOT (tr|R6MZR5) tRNA pseudouridine synthase A OS=Clostr...    67   1e-08
R7HLS1_9FIRM (tr|R7HLS1) tRNA pseudouridine synthase A OS=Firmic...    67   1e-08
K0P6D5_9BACT (tr|K0P6D5) tRNA pseudouridine synthase A OS=Cardin...    67   1e-08
D1A345_THECD (tr|D1A345) tRNA pseudouridine synthase A OS=Thermo...    67   1e-08
G9ZMT9_9LACO (tr|G9ZMT9) tRNA pseudouridine synthase A OS=Lactob...    67   1e-08
B6Y6M7_9RICK (tr|B6Y6M7) tRNA pseudouridine synthase A OS=Wolbac...    67   1e-08
B3QUL0_CHLT3 (tr|B3QUL0) tRNA pseudouridine synthase A OS=Chloro...    67   1e-08
D3HRK0_LEGLN (tr|D3HRK0) tRNA pseudouridine synthase A OS=Legion...    67   1e-08
D1RFZ8_LEGLO (tr|D1RFZ8) tRNA pseudouridine synthase A OS=Legion...    67   1e-08
K0IZ82_AMPXN (tr|K0IZ82) tRNA pseudouridine synthase A OS=Amphib...    67   1e-08
K8QFQ2_LACRH (tr|K8QFQ2) tRNA pseudouridine synthase A OS=Lactob...    67   1e-08
K8Q678_LACRH (tr|K8Q678) tRNA pseudouridine synthase A OS=Lactob...    67   1e-08
G6IZG8_LACRH (tr|G6IZG8) tRNA pseudouridine synthase A OS=Lactob...    67   1e-08
B5QPU8_LACRH (tr|B5QPU8) tRNA pseudouridine synthase A OS=Lactob...    67   1e-08
D9R5X6_CLOSW (tr|D9R5X6) tRNA pseudouridine synthase A OS=Clostr...    67   1e-08
R5BSC4_9BACE (tr|R5BSC4) tRNA pseudouridine synthase A OS=Bacter...    67   1e-08
E8LD65_9FIRM (tr|E8LD65) tRNA pseudouridine synthase A OS=Phasco...    67   1e-08
B8JBC1_ANAD2 (tr|B8JBC1) tRNA pseudouridine synthase A OS=Anaero...    67   1e-08
R6XMU8_9FIRM (tr|R6XMU8) tRNA pseudouridine synthase A OS=Firmic...    67   1e-08
A3JQ02_9RHOB (tr|A3JQ02) tRNA pseudouridine synthase A OS=Rhodob...    67   2e-08
N1V5T2_9MICC (tr|N1V5T2) tRNA pseudouridine synthase A OS=Arthro...    67   2e-08
D5RF84_FUSNC (tr|D5RF84) tRNA pseudouridine synthase A OS=Fusoba...    67   2e-08
R5FW10_9FIRM (tr|R5FW10) tRNA pseudouridine synthase A OS=Faecal...    67   2e-08
B7RLD9_9RHOB (tr|B7RLD9) tRNA pseudouridine synthase A OS=Roseob...    67   2e-08
J9DNL7_9THEM (tr|J9DNL7) tRNA pseudouridine synthase A OS=Thermo...    67   2e-08
H8G3Y6_9PSEU (tr|H8G3Y6) tRNA pseudouridine synthase A OS=Saccha...    67   2e-08
C7T713_LACRG (tr|C7T713) tRNA pseudouridine synthase A OS=Lactob...    67   2e-08
K0JHB7_BRAPL (tr|K0JHB7) tRNA pseudouridine synthase A OS=Brachy...    67   2e-08
J5UAZ3_9FIRM (tr|J5UAZ3) tRNA pseudouridine synthase A OS=Eubact...    67   2e-08
R7I2N6_9CLOT (tr|R7I2N6) tRNA pseudouridine synthase A 2 OS=Clos...    66   2e-08
D8ICF0_BRAP9 (tr|D8ICF0) tRNA pseudouridine synthase A OS=Brachy...    66   2e-08
L0F2E2_BRAPL (tr|L0F2E2) tRNA pseudouridine synthase A OS=Brachy...    66   2e-08
J9TSF4_BRAPL (tr|J9TSF4) tRNA pseudouridine synthase A OS=Brachy...    66   2e-08
Q4E7X8_9RICK (tr|Q4E7X8) tRNA pseudouridine synthase (Fragment) ...    66   2e-08
J8V8U3_FUSNU (tr|J8V8U3) tRNA pseudouridine synthase A OS=Fusoba...    66   2e-08
M9WV91_9RICK (tr|M9WV91) tRNA pseudouridine synthase A OS=Wolbac...    66   2e-08
A3SLU7_9RHOB (tr|A3SLU7) tRNA pseudouridine synthase A OS=Roseov...    66   2e-08
A3V9Z5_9RHOB (tr|A3V9Z5) tRNA pseudouridine synthase A OS=Mariti...    66   2e-08
R5SMN5_9CLOT (tr|R5SMN5) tRNA pseudouridine synthase A 2 OS=Clos...    66   2e-08
I1JGM9_SOYBN (tr|I1JGM9) Uncharacterized protein OS=Glycine max ...    66   2e-08
D6LJQ7_9FUSO (tr|D6LJQ7) tRNA pseudouridine synthase A OS=Fusoba...    66   3e-08
R5TJ48_9CLOT (tr|R5TJ48) tRNA pseudouridine synthase A 2 OS=Clos...    66   3e-08
B4V4X1_9ACTO (tr|B4V4X1) tRNA pseudouridine synthase A OS=Strept...    66   3e-08
G2MVS0_9THEO (tr|G2MVS0) tRNA pseudouridine synthase A OS=Thermo...    66   3e-08
A4EPB5_9RHOB (tr|A4EPB5) tRNA pseudouridine synthase A OS=Roseob...    66   3e-08
D3ALA0_9CLOT (tr|D3ALA0) tRNA pseudouridine synthase A OS=Clostr...    66   3e-08
R7N5E4_9FIRM (tr|R7N5E4) tRNA pseudouridine synthase A 1 OS=Firm...    65   3e-08
R9JZ63_9FIRM (tr|R9JZ63) tRNA pseudouridine(38-40) synthase OS=L...    65   3e-08
Q5GSK8_WOLTR (tr|Q5GSK8) tRNA pseudouridine synthase A OS=Wolbac...    65   3e-08
L0DDA4_SINAD (tr|L0DDA4) tRNA pseudouridine synthase A OS=Singul...    65   3e-08
D1B5U1_THEAS (tr|D1B5U1) tRNA pseudouridine synthase A OS=Therma...    65   3e-08
N9WV93_CLOIN (tr|N9WV93) tRNA pseudouridine(38-40) synthase OS=C...    65   3e-08
K8GN11_9CYAN (tr|K8GN11) tRNA pseudouridine synthase A OS=Oscill...    65   3e-08
J1F2V9_9LACO (tr|J1F2V9) tRNA pseudouridine synthase A OS=Lactob...    65   3e-08
G1VJ80_9FIRM (tr|G1VJ80) tRNA pseudouridine synthase A OS=Erysip...    65   3e-08
K4RJ80_HELHE (tr|K4RJ80) tRNA pseudouridine synthase A OS=Helico...    65   3e-08
G9XDD3_9FIRM (tr|G9XDD3) tRNA pseudouridine synthase A OS=Eubact...    65   3e-08
F9EL35_FUSNU (tr|F9EL35) tRNA pseudouridine synthase A OS=Fusoba...    65   3e-08
K4RMQ9_HELHE (tr|K4RMQ9) tRNA pseudouridine synthase OS=Helicoba...    65   4e-08
R5S863_9CLOT (tr|R5S863) tRNA pseudouridine synthase A 1 OS=Clos...    65   4e-08
F2LWT0_HIPMA (tr|F2LWT0) tRNA pseudouridine synthase A OS=Hippea...    65   4e-08
E2SNP6_9FIRM (tr|E2SNP6) tRNA pseudouridine synthase A OS=Erysip...    65   4e-08
A8MGJ9_ALKOO (tr|A8MGJ9) tRNA pseudouridine synthase A OS=Alkali...    65   4e-08
Q2LUS6_SYNAS (tr|Q2LUS6) tRNA pseudouridine synthase A OS=Syntro...    65   4e-08
I0ALT9_IGNAJ (tr|I0ALT9) tRNA pseudouridine synthase A OS=Ignavi...    65   4e-08
B9R8H6_RICCO (tr|B9R8H6) Pseudouridylate synthase, putative OS=R...    65   4e-08
N1WRC8_9FLAO (tr|N1WRC8) tRNA pseudouridine synthase A TruA OS=P...    65   4e-08
I4M5W1_GARVA (tr|I4M5W1) tRNA pseudouridine synthase A OS=Gardne...    65   4e-08
I4M1Z1_GARVA (tr|I4M1Z1) tRNA pseudouridine synthase A OS=Gardne...    65   4e-08
F5SIE8_9BACL (tr|F5SIE8) tRNA pseudouridine synthase A OS=Desmos...    65   5e-08
E8WTK0_GEOS8 (tr|E8WTK0) tRNA pseudouridine synthase A OS=Geobac...    65   5e-08
F8L3C2_SIMNZ (tr|F8L3C2) tRNA pseudouridine synthase A OS=Simkan...    65   5e-08
E0Q8L7_9BIFI (tr|E0Q8L7) tRNA pseudouridine synthase A OS=Bifido...    65   5e-08
Q2CC77_9RHOB (tr|Q2CC77) tRNA pseudouridine synthase A OS=Oceani...    65   5e-08
J7PBQ8_LISMN (tr|J7PBQ8) tRNA pseudouridine synthase A OS=Lister...    65   5e-08
D3KIF4_LISMN (tr|D3KIF4) tRNA pseudouridine synthase A OS=Lister...    65   5e-08
G9X0R9_9FIRM (tr|G9X0R9) tRNA pseudouridine synthase A OS=Eubact...    65   5e-08
M1LXY4_9PROT (tr|M1LXY4) tRNA pseudouridine synthase A OS=Candid...    65   5e-08
M7B4F9_FUSNU (tr|M7B4F9) tRNA pseudouridine synthase A OS=Fusoba...    65   5e-08
C7XRY2_9FUSO (tr|C7XRY2) tRNA pseudouridine synthase A OS=Fusoba...    65   5e-08
L0F5X1_DESDL (tr|L0F5X1) tRNA pseudouridine synthase A OS=Desulf...    65   5e-08
H8NJJ9_RICTP (tr|H8NJJ9) tRNA pseudouridine synthase A OS=Ricket...    65   5e-08
H8NI64_RICTP (tr|H8NI64) tRNA pseudouridine synthase A OS=Ricket...    65   5e-08
D9VUH3_9ACTO (tr|D9VUH3) tRNA pseudouridine synthase A OS=Strept...    65   6e-08
A3IGJ0_9BACI (tr|A3IGJ0) tRNA pseudouridine synthase (Fragment) ...    65   6e-08
M7P702_9BACL (tr|M7P702) tRNA pseudouridine synthase A OS=Bharga...    65   6e-08
E7FYC9_9HELI (tr|E7FYC9) tRNA pseudouridine synthase A OS=Helico...    65   6e-08
J9YZA5_9PROT (tr|J9YZA5) tRNA pseudouridine synthase A OS=alpha ...    65   6e-08
D6L7S5_9FUSO (tr|D6L7S5) tRNA pseudouridine synthase A OS=Fusoba...    65   6e-08
D8QUD6_SELML (tr|D8QUD6) tRNA pseudouridine synthase (Fragment) ...    65   6e-08
D8R403_SELML (tr|D8R403) tRNA pseudouridine synthase (Fragment) ...    65   6e-08
R5CZK2_9FIRM (tr|R5CZK2) tRNA pseudouridine synthase A 2 OS=Dore...    65   6e-08
N6UR35_9RHIZ (tr|N6UR35) tRNA pseudouridine synthase A OS=Barton...    65   6e-08
I4MFF9_GARVA (tr|I4MFF9) tRNA pseudouridine synthase A OS=Gardne...    65   7e-08
D5AYE6_RICPP (tr|D5AYE6) tRNA pseudouridine synthase A OS=Ricket...    64   7e-08
R0MBH3_RICPO (tr|R0MBH3) RNA polymerase sigma factor RpoD OS=Ric...    64   7e-08
R0KH72_RICPO (tr|R0KH72) Uncharacterized protein OS=Rickettsia p...    64   7e-08
M9TDH2_RICPO (tr|M9TDH2) RNA polymerase sigma factor RpoD OS=Ric...    64   7e-08
M9TD69_RICPO (tr|M9TD69) tRNA pseudouridine synthase A OS=Ricket...    64   7e-08
H8NF95_RICPO (tr|H8NF95) tRNA pseudouridine synthase A OS=Ricket...    64   7e-08
H8NCI2_RICPO (tr|H8NCI2) tRNA pseudouridine synthase A OS=Ricket...    64   7e-08
H8NBB9_RICPO (tr|H8NBB9) tRNA pseudouridine synthase A OS=Ricket...    64   7e-08
H8N8B9_RICPO (tr|H8N8B9) tRNA pseudouridine synthase A OS=Ricket...    64   7e-08
H8N5X4_RICPO (tr|H8N5X4) tRNA pseudouridine synthase A OS=Ricket...    64   7e-08
H8N4U6_RICPO (tr|H8N4U6) tRNA pseudouridine synthase A OS=Ricket...    64   7e-08
R1ECN0_EMIHU (tr|R1ECN0) Uncharacterized protein OS=Emiliania hu...    64   7e-08
C2JYL1_LACRH (tr|C2JYL1) tRNA pseudouridine synthase A OS=Lactob...    64   7e-08
E7FQB6_9LACO (tr|E7FQB6) tRNA pseudouridine synthase A OS=Lactob...    64   7e-08
C4FK30_9AQUI (tr|C4FK30) tRNA pseudouridine synthase A OS=Sulfur...    64   7e-08
M2Q2T6_9FIRM (tr|M2Q2T6) tRNA pseudouridine synthase A OS=Eggert...    64   7e-08
H1HH08_FUSNU (tr|H1HH08) tRNA pseudouridine synthase A OS=Fusoba...    64   7e-08
Q2LWJ8_SYNAS (tr|Q2LWJ8) tRNA pseudouridine synthase A OS=Syntro...    64   7e-08
C7MTX7_SACVD (tr|C7MTX7) tRNA pseudouridine synthase A OS=Saccha...    64   8e-08
M9WRV1_9RICK (tr|M9WRV1) Pseudouridine synthase OS=Wolbachia end...    64   8e-08
J0SG00_FUSNU (tr|J0SG00) tRNA pseudouridine synthase A OS=Fusoba...    64   8e-08
F4A2V1_MAHA5 (tr|F4A2V1) tRNA pseudouridine synthase A OS=Mahell...    64   8e-08
G2SR81_LACRR (tr|G2SR81) tRNA pseudouridine synthase A OS=Lactob...    64   8e-08
R6SRM0_9LACO (tr|R6SRM0) tRNA pseudouridine synthase A OS=Lactob...    64   8e-08
F7R3G7_9LACO (tr|F7R3G7) tRNA pseudouridine synthase A OS=Lactob...    64   8e-08
A0YJR8_LYNSP (tr|A0YJR8) tRNA pseudouridine synthase A OS=Lyngby...    64   8e-08
A5TRQ8_FUSNP (tr|A5TRQ8) tRNA pseudouridine synthase A OS=Fusoba...    64   8e-08
R6XU67_9CLOT (tr|R6XU67) tRNA pseudouridine synthase A OS=Clostr...    64   8e-08
J7MX69_LISMN (tr|J7MX69) tRNA pseudouridine synthase A OS=Lister...    64   8e-08
J7MLX7_LISMN (tr|J7MLX7) tRNA pseudouridine synthase A OS=Lister...    64   8e-08
G5GYU8_FUSNP (tr|G5GYU8) tRNA pseudouridine synthase A OS=Fusoba...    64   8e-08
E6YXK6_BARSR (tr|E6YXK6) tRNA pseudouridine synthase A OS=Barton...    64   8e-08
D7UFL5_LISMN (tr|D7UFL5) tRNA pseudouridine synthase A OS=Lister...    64   8e-08
C8K6E3_LISMN (tr|C8K6E3) tRNA pseudouridine synthase A OS=Lister...    64   8e-08
Q03EE7_PEDPA (tr|Q03EE7) tRNA pseudouridine synthase A OS=Pedioc...    64   8e-08
D0BTV9_9FUSO (tr|D0BTV9) tRNA pseudouridine synthase A OS=Fusoba...    64   9e-08
L7W5X2_NONDD (tr|L7W5X2) tRNA pseudouridine synthase A OS=Nonlab...    64   9e-08
R6M2M7_9FIRM (tr|R6M2M7) tRNA pseudouridine synthase A 2 OS=Firm...    64   1e-07
I4LZU6_GARVA (tr|I4LZU6) tRNA pseudouridine synthase A OS=Gardne...    64   1e-07
D7N6X8_9FIRM (tr|D7N6X8) tRNA pseudouridine synthase A OS=Pepton...    64   1e-07
D5U822_BRAM5 (tr|D5U822) tRNA pseudouridine synthase A OS=Brachy...    64   1e-07
C5C0F7_BEUC1 (tr|C5C0F7) tRNA pseudouridine synthase A OS=Beuten...    64   1e-07
R7FC46_9FIRM (tr|R7FC46) tRNA pseudouridine synthase A OS=Rumino...    64   1e-07
I5BU77_9RHIZ (tr|I5BU77) tRNA pseudouridine synthase A OS=Nitrat...    64   1e-07
C3WTC9_9FUSO (tr|C3WTC9) tRNA pseudouridine synthase A OS=Fusoba...    64   1e-07
G2K2M9_LISM4 (tr|G2K2M9) tRNA pseudouridine synthase A OS=Lister...    64   1e-07
D2P7Z7_LISM2 (tr|D2P7Z7) tRNA pseudouridine synthase A OS=Lister...    64   1e-07
D2NWH8_LISM1 (tr|D2NWH8) tRNA pseudouridine synthase A OS=Lister...    64   1e-07
J7P542_LISMN (tr|J7P542) tRNA pseudouridine synthase A OS=Lister...    64   1e-07
J7NP85_LISMN (tr|J7NP85) tRNA pseudouridine synthase A OS=Lister...    64   1e-07
J7NJT1_LISMN (tr|J7NJT1) tRNA pseudouridine synthase A OS=Lister...    64   1e-07
J7MR66_LISMN (tr|J7MR66) tRNA pseudouridine synthase A OS=Lister...    64   1e-07
G2KEC3_LISMN (tr|G2KEC3) tRNA pseudouridine synthase A OS=Lister...    64   1e-07
G2KAG0_LISMN (tr|G2KAG0) tRNA pseudouridine synthase A OS=Lister...    64   1e-07
G2JUC1_LISMN (tr|G2JUC1) tRNA pseudouridine synthase A OS=Lister...    64   1e-07
D4PW64_LISMN (tr|D4PW64) tRNA pseudouridine synthase A OS=Lister...    64   1e-07
C8KD94_LISMN (tr|C8KD94) tRNA pseudouridine synthase A OS=Lister...    64   1e-07
C8JXA1_LISMN (tr|C8JXA1) tRNA pseudouridine synthase A OS=Lister...    64   1e-07
G0EM30_BRAIP (tr|G0EM30) tRNA pseudouridine synthase A OS=Brachy...    64   1e-07
B7C9S2_9FIRM (tr|B7C9S2) tRNA pseudouridine synthase A OS=Eubact...    64   1e-07
A8ZTL2_DESOH (tr|A8ZTL2) tRNA pseudouridine synthase A OS=Desulf...    64   1e-07
R5Y5V3_9CLOT (tr|R5Y5V3) tRNA pseudouridine synthase A OS=Clostr...    64   1e-07
Q7P2Y9_FUSNV (tr|Q7P2Y9) tRNA pseudouridine synthase A OS=Fusoba...    64   1e-07
D6S739_PEPMA (tr|D6S739) tRNA pseudouridine synthase A OS=Finego...    64   1e-07
C9CZP8_9RHOB (tr|C9CZP8) tRNA pseudouridine synthase A OS=Silici...    64   1e-07
R5LIM1_9MOLU (tr|R5LIM1) tRNA pseudouridine synthase A OS=Mycopl...    64   1e-07
K2MTL9_9RHIZ (tr|K2MTL9) tRNA pseudouridine synthase A OS=Nitrat...    64   1e-07
N9XHX4_9CLOT (tr|N9XHX4) tRNA pseudouridine(38-40) synthase OS=C...    64   1e-07
K4IQ00_BIFAP (tr|K4IQ00) tRNA pseudouridine synthase A OS=Bifido...    64   1e-07
B6XWT4_9BIFI (tr|B6XWT4) tRNA pseudouridine synthase A OS=Bifido...    64   1e-07
D2R9Q1_GARV4 (tr|D2R9Q1) tRNA pseudouridine synthase A OS=Gardne...    64   1e-07
F4GU37_PUSST (tr|F4GU37) tRNA pseudouridine synthase A OS=Pusill...    64   1e-07
D2Q8J8_BIFDB (tr|D2Q8J8) tRNA pseudouridine synthase A OS=Bifido...    64   1e-07
R9L057_9FIRM (tr|R9L057) tRNA pseudouridine(38-40) synthase OS=L...    64   1e-07
Q4EGE3_LISMN (tr|Q4EGE3) tRNA pseudouridine synthase A OS=Lister...    64   1e-07
K8EZT0_LISMN (tr|K8EZT0) tRNA pseudouridine synthase A OS=Lister...    64   1e-07
J7PL01_LISMN (tr|J7PL01) tRNA pseudouridine synthase A OS=Lister...    64   1e-07
J7PJ66_LISMN (tr|J7PJ66) tRNA pseudouridine synthase A OS=Lister...    64   1e-07
I0CUT0_LISMN (tr|I0CUT0) tRNA pseudouridine synthase A OS=Lister...    64   1e-07
F3RA59_LISMN (tr|F3RA59) tRNA pseudouridine synthase A OS=Lister...    64   1e-07
D4PLC9_LISMN (tr|D4PLC9) tRNA pseudouridine synthase A OS=Lister...    64   1e-07
A3V313_9RHOB (tr|A3V313) tRNA pseudouridine synthase A OS=Loktan...    64   1e-07
E3YJQ6_LISMN (tr|E3YJQ6) tRNA pseudouridine synthase A OS=Lister...    64   1e-07
C6SLY1_NEIME (tr|C6SLY1) tRNA pseudouridine synthase A OS=Neisse...    64   1e-07
B4RDU3_PHEZH (tr|B4RDU3) tRNA pseudouridine synthase A OS=Phenyl...    64   1e-07
K9T848_9CYAN (tr|K9T848) tRNA pseudouridine synthase A OS=Pleuro...    64   1e-07
K9A218_9BACI (tr|K9A218) tRNA pseudouridine synthase A OS=Lysini...    64   1e-07
D7WZT2_9BACI (tr|D7WZT2) tRNA pseudouridine synthase A OS=Lysini...    64   1e-07
J7PKX0_LISMN (tr|J7PKX0) tRNA pseudouridine synthase A OS=Lister...    64   1e-07
G9XJV6_DESHA (tr|G9XJV6) tRNA pseudouridine synthase A OS=Desulf...    64   1e-07
R9Q5Q1_9AQUI (tr|R9Q5Q1) tRNA pseudouridine synthase A OS=Hydrog...    64   1e-07
R9Q174_9AQUI (tr|R9Q174) tRNA pseudouridine synthase A OS=Hydrog...    64   1e-07
M4V6Q0_9AQUI (tr|M4V6Q0) Pseudouridylate synthase I OS=Hydrogeno...    64   1e-07
M1RKM7_9AQUI (tr|M1RKM7) tRNA pseudouridine synthase A OS=Hydrog...    64   1e-07
A0JZ47_ARTS2 (tr|A0JZ47) tRNA pseudouridine synthase A OS=Arthro...    64   1e-07
F6B2M9_DESCC (tr|F6B2M9) tRNA pseudouridine synthase A OS=Desulf...    64   1e-07
F0DMX2_9FIRM (tr|F0DMX2) tRNA pseudouridine synthase A OS=Desulf...    64   1e-07
H6R0Q7_NOCCG (tr|H6R0Q7) tRNA pseudouridine synthase A OS=Nocard...    64   1e-07
F7KJK0_9FIRM (tr|F7KJK0) tRNA pseudouridine synthase A OS=Lachno...    63   2e-07
R6XMT0_9BACT (tr|R6XMT0) tRNA pseudouridine synthase A OS=Alisti...    63   2e-07
R6N7L5_9CLOT (tr|R6N7L5) tRNA pseudouridine synthase A 2 OS=Clos...    63   2e-07
H0U1U1_WOLPI (tr|H0U1U1) tRNA pseudouridine synthase A OS=Wolbac...    63   2e-07
F2F4E0_SOLSS (tr|F2F4E0) tRNA pseudouridine synthase A OS=Soliba...    63   2e-07
R9CCN3_9BACI (tr|R9CCN3) tRNA pseudouridine synthase A OS=Bacill...    63   2e-07
R9N3H4_9FIRM (tr|R9N3H4) tRNA pseudouridine(38-40) synthase OS=L...    63   2e-07
C3WYL5_9FUSO (tr|C3WYL5) tRNA pseudouridine synthase A OS=Fusoba...    63   2e-07
E4U9J4_OCEP5 (tr|E4U9J4) tRNA pseudouridine synthase A OS=Oceani...    63   2e-07
R5NQM8_9CLOT (tr|R5NQM8) tRNA pseudouridine synthase A OS=Clostr...    63   2e-07
D5EE14_AMICL (tr|D5EE14) tRNA pseudouridine synthase A OS=Aminob...    63   2e-07
R0DPW4_9RHOB (tr|R0DPW4) tRNA pseudouridine synthase A OS=Rueger...    63   2e-07
H1B828_9FIRM (tr|H1B828) tRNA pseudouridine synthase A OS=Erysip...    63   2e-07
H1AWC0_9FIRM (tr|H1AWC0) tRNA pseudouridine synthase A OS=Erysip...    63   2e-07
E4LNR3_9CLOT (tr|E4LNR3) tRNA pseudouridine synthase A OS=Clostr...    63   2e-07
Q250I7_DESHY (tr|Q250I7) tRNA pseudouridine synthase A OS=Desulf...    63   2e-07
R6M8S7_9CLOT (tr|R6M8S7) tRNA pseudouridine synthase A 1 OS=Clos...    63   2e-07
G6ANI8_LACRH (tr|G6ANI8) tRNA pseudouridine synthase A OS=Lactob...    63   2e-07
D6ZBI9_SEGRD (tr|D6ZBI9) tRNA pseudouridine synthase A OS=Segnil...    63   2e-07
D5WS77_BACT2 (tr|D5WS77) tRNA pseudouridine synthase A OS=Bacill...    63   2e-07
J7PHM1_LISMN (tr|J7PHM1) tRNA pseudouridine synthase A OS=Lister...    63   2e-07
F3YNI0_LISMN (tr|F3YNI0) tRNA pseudouridine synthase A OS=Lister...    63   2e-07
F3RMN6_LISMN (tr|F3RMN6) tRNA pseudouridine synthase A OS=Lister...    63   2e-07
D4Q0A7_LISMN (tr|D4Q0A7) tRNA pseudouridine synthase A OS=Lister...    63   2e-07
R5XJ12_9FUSO (tr|R5XJ12) tRNA pseudouridine synthase A OS=Fusoba...    63   2e-07
K1KKJ0_9BACI (tr|K1KKJ0) tRNA pseudouridine synthase A OS=Bacill...    63   2e-07
I4MBP2_GARVA (tr|I4MBP2) tRNA pseudouridine synthase A OS=Gardne...    63   2e-07
D6YZQ4_DESAT (tr|D6YZQ4) tRNA pseudouridine synthase A OS=Desulf...    63   2e-07
K9TT50_9CYAN (tr|K9TT50) tRNA pseudouridine synthase A OS=Chrooc...    63   2e-07
F7MDC7_9FUSO (tr|F7MDC7) tRNA pseudouridine synthase A OS=Fusoba...    63   2e-07
M1WSN2_DESPC (tr|M1WSN2) tRNA pseudouridine synthase A OS=Desulf...    63   2e-07
A4EN27_9RHOB (tr|A4EN27) tRNA pseudouridine synthase A OS=Roseob...    63   2e-07
L7CBP4_RHOBT (tr|L7CBP4) tRNA pseudouridine synthase A OS=Rhodop...    63   2e-07
Q39Y26_GEOMG (tr|Q39Y26) tRNA pseudouridine synthase A OS=Geobac...    63   2e-07
R6PER2_9FIRM (tr|R6PER2) tRNA pseudouridine synthase A 1 OS=Euba...    63   2e-07
H1LBF8_GEOME (tr|H1LBF8) tRNA pseudouridine synthase A OS=Geobac...    63   2e-07
K9IEF2_9LACO (tr|K9IEF2) tRNA pseudouridine synthase A OS=Pedioc...    63   2e-07
D0LWH9_HALO1 (tr|D0LWH9) tRNA pseudouridine synthase A OS=Halian...    63   2e-07
M1Z1W5_9BACT (tr|M1Z1W5) tRNA pseudouridine synthase A OS=Nitros...    63   2e-07
C6PXK3_9CLOT (tr|C6PXK3) tRNA pseudouridine synthase A OS=Clostr...    63   2e-07
I9W732_9RALS (tr|I9W732) tRNA pseudouridine synthase A OS=Ralsto...    63   2e-07
M5SKW4_9PLAN (tr|M5SKW4) tRNA pseudouridine synthase A OS=Rhodop...    63   2e-07
M2AJK2_9PLAN (tr|M2AJK2) tRNA pseudouridine synthase A OS=Rhodop...    63   2e-07
K5D7S1_RHOBT (tr|K5D7S1) tRNA pseudouridine synthase A OS=Rhodop...    63   2e-07
R6XLV3_9BACT (tr|R6XLV3) tRNA pseudouridine synthase A OS=Alisti...    63   2e-07
R6UI61_9FIRM (tr|R6UI61) tRNA pseudouridine synthase A OS=Erysip...    63   2e-07
J4KC26_STRAP (tr|J4KC26) tRNA pseudouridine synthase A OS=Strept...    63   2e-07
M6CJ85_LEPME (tr|M6CJ85) tRNA pseudouridine(38-40) synthase OS=L...    63   2e-07
K5BQX8_LEPME (tr|K5BQX8) tRNA pseudouridine synthase A OS=Leptos...    63   2e-07
C8W418_DESAS (tr|C8W418) tRNA pseudouridine synthase A OS=Desulf...    63   2e-07
C0BQF2_9BIFI (tr|C0BQF2) tRNA pseudouridine synthase A OS=Bifido...    63   2e-07
I4BV55_ANAMD (tr|I4BV55) tRNA pseudouridine synthase A OS=Anaero...    63   2e-07
E8Q759_BLOVB (tr|E8Q759) tRNA pseudouridine synthase A OS=Blochm...    63   2e-07
L8E6W4_LISMN (tr|L8E6W4) tRNA pseudouridine synthase A OS=Lister...    63   2e-07
L8DWT5_LISMN (tr|L8DWT5) tRNA pseudouridine synthase A OS=Lister...    63   2e-07
H6LGR8_ACEWD (tr|H6LGR8) tRNA pseudouridine synthase A OS=Acetob...    63   2e-07
R6WD78_9FIRM (tr|R6WD78) tRNA pseudouridine synthase A 2 OS=Dore...    63   2e-07
Q2JUJ7_SYNJA (tr|Q2JUJ7) tRNA pseudouridine synthase A OS=Synech...    63   2e-07
F2RJW1_STRVP (tr|F2RJW1) tRNA pseudouridine synthase A OS=Strept...    63   2e-07
J1JK90_9RHIZ (tr|J1JK90) tRNA pseudouridine synthase A OS=Barton...    63   2e-07
E1KXS1_PEPMA (tr|E1KXS1) tRNA pseudouridine synthase A OS=Finego...    63   2e-07
L1KFK3_9RHOB (tr|L1KFK3) tRNA pseudouridine synthase A OS=Rhodob...    63   2e-07
G7JGT6_MEDTR (tr|G7JGT6) tRNA pseudouridine synthase OS=Medicago...    63   2e-07
F8BA07_LISMM (tr|F8BA07) tRNA pseudouridine synthase A OS=Lister...    63   2e-07
E1UBI1_LISML (tr|E1UBI1) tRNA pseudouridine synthase A OS=Lister...    63   2e-07
J0Q9D4_9RHIZ (tr|J0Q9D4) tRNA pseudouridine synthase A OS=Barton...    63   2e-07
F9MZ26_PEPMA (tr|F9MZ26) tRNA pseudouridine synthase A OS=Finego...    63   2e-07
D9PP68_PEPMA (tr|D9PP68) tRNA pseudouridine synthase A OS=Finego...    63   2e-07
A0NSB1_9RHOB (tr|A0NSB1) tRNA pseudouridine synthase A OS=Labren...    63   2e-07
G9EU60_9GAMM (tr|G9EU60) tRNA pseudouridine synthase A OS=Legion...    63   3e-07
G7JGU0_MEDTR (tr|G7JGU0) Uncharacterized protein OS=Medicago tru...    62   3e-07
B9NQ81_9RHOB (tr|B9NQ81) tRNA pseudouridine synthase A OS=Rhodob...    62   3e-07
J1K121_9RHIZ (tr|J1K121) tRNA pseudouridine synthase A OS=Barton...    62   3e-07
J0ZW28_9RHIZ (tr|J0ZW28) tRNA pseudouridine synthase A OS=Barton...    62   3e-07
M1LMK3_9CLOT (tr|M1LMK3) tRNA pseudouridine synthase A OS=Clostr...    62   3e-07
B7FLC8_MEDTR (tr|B7FLC8) Uncharacterized protein OS=Medicago tru...    62   3e-07
M2XVR2_GALSU (tr|M2XVR2) tRNA pseudouridine synthase A OS=Galdie...    62   3e-07
G1Y1F0_9PROT (tr|G1Y1F0) tRNA pseudouridine synthase A OS=Azospi...    62   3e-07
Q1IRQ4_KORVE (tr|Q1IRQ4) tRNA pseudouridine synthase A OS=Koriba...    62   3e-07
D7AMW1_GEOSK (tr|D7AMW1) tRNA pseudouridine synthase A OS=Geobac...    62   3e-07
M1WV50_9NOST (tr|M1WV50) tRNA pseudouridine synthase A OS=Richel...    62   3e-07
D0CXH5_9RHOB (tr|D0CXH5) tRNA pseudouridine synthase A OS=Silici...    62   3e-07
C5WCA7_9ENTR (tr|C5WCA7) tRNA pseudouridine synthase A OS=Candid...    62   3e-07
H5V8S6_HELBI (tr|H5V8S6) tRNA pseudouridine synthase A OS=Helico...    62   3e-07
J3TGT3_9ENTR (tr|J3TGT3) tRNA pseudouridine synthase A OS=second...    62   3e-07
G2NF69_9ACTO (tr|G2NF69) tRNA pseudouridine synthase A OS=Strept...    62   3e-07
J0ZT41_9RHIZ (tr|J0ZT41) tRNA pseudouridine synthase A OS=Barton...    62   3e-07
C0BZJ1_9CLOT (tr|C0BZJ1) tRNA pseudouridine synthase A OS=Clostr...    62   3e-07
K0ETC8_9NOCA (tr|K0ETC8) tRNA pseudouridine synthase A OS=Nocard...    62   3e-07
B9TLD0_RICCO (tr|B9TLD0) tRNA pseudouridine synthase (Fragment) ...    62   3e-07
R6SR18_9FIRM (tr|R6SR18) tRNA pseudouridine synthase A 2 OS=Dore...    62   3e-07
G1WUI0_9FIRM (tr|G1WUI0) tRNA pseudouridine synthase A OS=Dorea ...    62   3e-07
B0G1Z8_9FIRM (tr|B0G1Z8) tRNA pseudouridine synthase A OS=Dorea ...    62   3e-07
F9ZFZ4_9PROT (tr|F9ZFZ4) tRNA pseudouridine synthase A OS=Nitros...    62   3e-07
D1CFF5_THET1 (tr|D1CFF5) tRNA pseudouridine synthase A OS=Thermo...    62   3e-07
F8LB99_9CHLA (tr|F8LB99) tRNA pseudouridine synthase A OS=Waddli...    62   3e-07
C6JLP7_FUSVA (tr|C6JLP7) tRNA pseudouridine synthase A OS=Fusoba...    62   3e-07
M1WYZ3_9NOST (tr|M1WYZ3) tRNA pseudouridine synthase A OS=Richel...    62   3e-07
R6FNV4_9CLOT (tr|R6FNV4) tRNA pseudouridine synthase A OS=Clostr...    62   3e-07
M7YB06_9RHIZ (tr|M7YB06) tRNA pseudouridine synthase A OS=Methyl...    62   3e-07
A9EAT3_9RHOB (tr|A9EAT3) tRNA pseudouridine synthase A OS=Oceani...    62   3e-07
B8FTY6_DESHD (tr|B8FTY6) tRNA pseudouridine synthase A OS=Desulf...    62   3e-07
C1F1S9_ACIC5 (tr|C1F1S9) tRNA pseudouridine synthase A OS=Acidob...    62   3e-07
E6Q5I0_9ZZZZ (tr|E6Q5I0) Pseudouridylate synthase I (Modular pro...    62   4e-07
I1CXL7_9PSEU (tr|I1CXL7) tRNA pseudouridine synthase A OS=Saccha...    62   4e-07
L7L6L9_9ACTO (tr|L7L6L9) tRNA pseudouridine synthase A OS=Gordon...    62   4e-07
D6YUD5_WADCW (tr|D6YUD5) tRNA pseudouridine synthase A OS=Waddli...    62   4e-07
C4RAU9_9ACTO (tr|C4RAU9) tRNA pseudouridine synthase A OS=Microm...    62   4e-07
D7CU58_TRURR (tr|D7CU58) tRNA pseudouridine synthase A OS=Truepe...    62   4e-07
R6NSQ7_9BIFI (tr|R6NSQ7) tRNA pseudouridine synthase A OS=Bifido...    62   4e-07
R4RYI1_LACFE (tr|R4RYI1) tRNA pseudouridine synthase A OS=Lactob...    62   4e-07
C0WZT7_LACFE (tr|C0WZT7) tRNA pseudouridine synthase A OS=Lactob...    62   4e-07
L8XPM2_9SPIR (tr|L8XPM2) tRNA pseudouridine synthase A OS=Brachy...    62   4e-07
F7L0U6_9FUSO (tr|F7L0U6) tRNA pseudouridine synthase A OS=Fusoba...    62   4e-07
E0RPI6_SPITD (tr|E0RPI6) tRNA pseudouridine synthase A OS=Spiroc...    62   4e-07
F8A9L6_THEID (tr|F8A9L6) tRNA pseudouridine synthase A OS=Thermo...    62   4e-07
D4H707_DENA2 (tr|D4H707) tRNA pseudouridine synthase A OS=Denitr...    62   4e-07
D8UF65_VOLCA (tr|D8UF65) tRNA pseudouridine synthase (Fragment) ...    62   4e-07
C7MEW9_BRAFD (tr|C7MEW9) tRNA pseudouridine synthase A OS=Brachy...    62   4e-07
F5M4W2_RHOSH (tr|F5M4W2) tRNA pseudouridine synthase A OS=Rhodob...    62   4e-07
E5XKM6_9ACTO (tr|E5XKM6) tRNA pseudouridine synthase A OS=Segnil...    62   4e-07
E5C2J6_9FUSO (tr|E5C2J6) tRNA pseudouridine synthase A OS=Fusoba...    62   4e-07
A3UFC3_9RHOB (tr|A3UFC3) tRNA pseudouridine synthase A OS=Oceani...    62   4e-07
K1WD33_SPIPL (tr|K1WD33) tRNA pseudouridine synthase A OS=Arthro...    62   4e-07
H1WMF8_9CYAN (tr|H1WMF8) tRNA pseudouridine synthase A OS=Arthro...    62   4e-07
B5W6Q6_SPIMA (tr|B5W6Q6) tRNA pseudouridine synthase A OS=Arthro...    62   4e-07

>I1KPQ1_SOYBN (tr|I1KPQ1) tRNA pseudouridine synthase OS=Glycine max PE=3 SV=2
          Length = 444

 Score =  596 bits (1537), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 280/355 (78%), Positives = 311/355 (87%)

Query: 31  SSSMDNHRETENYAHYNHTDPCKHARWNARESYEFMYARPWQRVNDFYLNAVLGNLSLPL 90
           S SM+N R+TE + HYNHT P K+ARW ARES+EFMYARPWQRVNDFYLN V  NLSLPL
Sbjct: 38  SISMNNLRQTETHVHYNHTHPSKYARWTARESFEFMYARPWQRVNDFYLNIVRANLSLPL 97

Query: 91  LFGAEKIHDHNNEPGIPAVSDKPEFESVASRGRGGRWARLTFKIVLSYHGGSFDGWQKQP 150
           LFGA+ +   +N+ GI A+S   E ESVAS  R GRWAR TFKI+LSYHGGSFDGWQKQP
Sbjct: 98  LFGAQTLVVDHNDTGIAALSGSSELESVASEDRSGRWARTTFKIILSYHGGSFDGWQKQP 157

Query: 151 GLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKGVTALQQVCSFYTWKK 210
           GLNTVQS++EG LG FVDE KTQ LKD+GLPIEG   VAGRTDKGVT LQQVCSFYTWKK
Sbjct: 158 GLNTVQSIVEGSLGKFVDEKKTQLLKDKGLPIEGCAIVAGRTDKGVTGLQQVCSFYTWKK 217

Query: 211 DVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYLYIFPLTDGGYKDQSSGS 270
           DVKPRDIEDAI HAAPGKLRVISVSEVSR FHPNFSAKWRRYLYIFPLT+GGY DQSS +
Sbjct: 218 DVKPRDIEDAINHAAPGKLRVISVSEVSRVFHPNFSAKWRRYLYIFPLTNGGYTDQSSDN 277

Query: 271 GEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQKLEGKLLSYKMFARDTKASR 330
           GEF+D+ + NEIHDS+SKD+LENE KSY FS+SKVNRLL+KLEGKLLSYKMFARDTKASR
Sbjct: 278 GEFYDSFKYNEIHDSASKDELENEKKSYAFSISKVNRLLRKLEGKLLSYKMFARDTKASR 337

Query: 331 NEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVANRFLRRMVRVLVATSIR 385
           N+GPPTECF+YHARA+E +LP  D+ EET+VMC+ELVANRFLR+MVRVLVATSIR
Sbjct: 338 NDGPPTECFVYHARAMEVKLPATDHGEETKVMCVELVANRFLRKMVRVLVATSIR 392


>I3SYJ2_MEDTR (tr|I3SYJ2) tRNA pseudouridine synthase OS=Medicago truncatula PE=2
           SV=1
          Length = 400

 Score =  540 bits (1392), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 259/344 (75%), Positives = 294/344 (85%), Gaps = 5/344 (1%)

Query: 42  NYAHYNHTDPCKHARWNARESYEFMYARPWQRVNDFYLNAVLGNLSLPLLFGAEKIHDHN 101
           ++ HYNHT P K+ARWNARES+EFMYARPWQRVN FY N V GNLSLPLLF ++ +  H+
Sbjct: 10  HHVHYNHTHPSKYARWNARESFEFMYARPWQRVNHFYSNTVRGNLSLPLLFQSQTLPVHD 69

Query: 102 NEPGIPAVSDKPEFESVASRGRGGRWARLTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEG 161
           +   +P +S   EF+S AS+ R G+WAR  FKI+LSYHGGSFDGWQKQP LNTVQSV+E 
Sbjct: 70  SR--VPEIS---EFQSGASKDRSGKWARFNFKILLSYHGGSFDGWQKQPNLNTVQSVVEV 124

Query: 162 PLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKGVTALQQVCSFYTWKKDVKPRDIEDAI 221
            LG FVDENKTQ LKD+GLPI+G   VAGRTDKGVTALQQVCSFYTWKKD+KPR+IEDAI
Sbjct: 125 SLGKFVDENKTQLLKDKGLPIQGCAAVAGRTDKGVTALQQVCSFYTWKKDIKPREIEDAI 184

Query: 222 YHAAPGKLRVISVSEVSRAFHPNFSAKWRRYLYIFPLTDGGYKDQSSGSGEFFDTLRNNE 281
             AAPGKLRV+SV EVSRAFHPNFSAKWRRYLYIFPLTDG  KDQS G+GE  D+   NE
Sbjct: 185 NDAAPGKLRVVSVYEVSRAFHPNFSAKWRRYLYIFPLTDGQDKDQSGGNGESCDSFIYNE 244

Query: 282 IHDSSSKDDLENETKSYMFSVSKVNRLLQKLEGKLLSYKMFARDTKASRNEGPPTECFLY 341
           I DS SKD+LE E KSY+F V KVNRLLQKLEGK+LSYKMFARDTKASRN+GPPTECF++
Sbjct: 245 ICDSDSKDELEKENKSYVFGVRKVNRLLQKLEGKMLSYKMFARDTKASRNDGPPTECFVH 304

Query: 342 HARAIEARLPLADNDEETRVMCIELVANRFLRRMVRVLVATSIR 385
           HARA+EA+LP+ +N EETRVMCIELVANRFLR+MVRVLVAT+IR
Sbjct: 305 HARAMEAKLPITENGEETRVMCIELVANRFLRKMVRVLVATTIR 348


>G7LIU9_MEDTR (tr|G7LIU9) tRNA pseudouridine synthase OS=Medicago truncatula
           GN=MTR_8g101250 PE=3 SV=1
          Length = 400

 Score =  539 bits (1388), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 258/344 (75%), Positives = 293/344 (85%), Gaps = 5/344 (1%)

Query: 42  NYAHYNHTDPCKHARWNARESYEFMYARPWQRVNDFYLNAVLGNLSLPLLFGAEKIHDHN 101
           ++ HYNHT P K+ARWNARES+EFMYARPWQRVN FY N V GN SLPLLF ++ +  H+
Sbjct: 10  HHVHYNHTHPSKYARWNARESFEFMYARPWQRVNHFYSNTVRGNFSLPLLFQSQTLPVHD 69

Query: 102 NEPGIPAVSDKPEFESVASRGRGGRWARLTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEG 161
           +   +P +S   EF+S AS+ R G+WAR  FKI+LSYHGGSFDGWQKQP LNTVQSV+E 
Sbjct: 70  SR--VPEIS---EFQSGASKDRSGKWARFNFKILLSYHGGSFDGWQKQPNLNTVQSVVEV 124

Query: 162 PLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKGVTALQQVCSFYTWKKDVKPRDIEDAI 221
            LG FVDENKTQ LKD+GLPI+G   VAGRTDKGVTALQQVCSFYTWKKD+KPR+IEDAI
Sbjct: 125 SLGKFVDENKTQLLKDKGLPIQGCAAVAGRTDKGVTALQQVCSFYTWKKDIKPREIEDAI 184

Query: 222 YHAAPGKLRVISVSEVSRAFHPNFSAKWRRYLYIFPLTDGGYKDQSSGSGEFFDTLRNNE 281
             AAPGKLRV+SV EVSRAFHPNFSAKWRRYLYIFPLTDG  KDQS G+GE  D+   NE
Sbjct: 185 NDAAPGKLRVVSVYEVSRAFHPNFSAKWRRYLYIFPLTDGQDKDQSGGNGESCDSFIYNE 244

Query: 282 IHDSSSKDDLENETKSYMFSVSKVNRLLQKLEGKLLSYKMFARDTKASRNEGPPTECFLY 341
           I DS SKD+LE E KSY+F V KVNRLLQKLEGK+LSYKMFARDTKASRN+GPPTECF++
Sbjct: 245 ICDSDSKDELEKENKSYVFGVRKVNRLLQKLEGKMLSYKMFARDTKASRNDGPPTECFVH 304

Query: 342 HARAIEARLPLADNDEETRVMCIELVANRFLRRMVRVLVATSIR 385
           HARA+EA+LP+ +N EETRVMCIELVANRFLR+MVRVLVAT+IR
Sbjct: 305 HARAMEAKLPITENGEETRVMCIELVANRFLRKMVRVLVATTIR 348


>K7KRU2_SOYBN (tr|K7KRU2) tRNA pseudouridine synthase OS=Glycine max PE=3 SV=1
          Length = 372

 Score =  521 bits (1341), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 247/320 (77%), Positives = 276/320 (86%)

Query: 66  MYARPWQRVNDFYLNAVLGNLSLPLLFGAEKIHDHNNEPGIPAVSDKPEFESVASRGRGG 125
           MYARPWQRV+DFYLN V  NLSLPLLFGA+ +   +N+ GI A+SD  E ESVA+  R G
Sbjct: 1   MYARPWQRVDDFYLNIVRANLSLPLLFGAQTLVVDHNDTGIAALSDTCELESVATEDRSG 60

Query: 126 RWARLTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGS 185
           R AR TFKI+LSYHGGSFDGWQKQPGLNTVQS++EG LG FVDE KTQ LKD GLPIEG 
Sbjct: 61  RRARTTFKIILSYHGGSFDGWQKQPGLNTVQSIVEGSLGKFVDEKKTQLLKDNGLPIEGC 120

Query: 186 VTVAGRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNF 245
             VAGRTDKGVT LQQVCSFYTWKKDVKPRDIEDAI HA PGK RVISVSEVSR FHPNF
Sbjct: 121 AVVAGRTDKGVTGLQQVCSFYTWKKDVKPRDIEDAINHATPGKFRVISVSEVSRVFHPNF 180

Query: 246 SAKWRRYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKV 305
           SAKWRRYLYIFPLT+G Y DQS+ +G F+++ + NEIHDS+SKD+LEN  KSYMFS SKV
Sbjct: 181 SAKWRRYLYIFPLTNGRYTDQSNDNGHFYNSCKYNEIHDSASKDELENGKKSYMFSTSKV 240

Query: 306 NRLLQKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIE 365
           NRLL+KLEGKLLSYKMFARDTKASRN+GPPTECF+YHARA+E + P  D+ EET+VMC+E
Sbjct: 241 NRLLRKLEGKLLSYKMFARDTKASRNDGPPTECFVYHARAMEVKPPTTDHGEETKVMCVE 300

Query: 366 LVANRFLRRMVRVLVATSIR 385
           LVA+RFLR+MVRVLVATSIR
Sbjct: 301 LVADRFLRKMVRVLVATSIR 320


>F6HT31_VITVI (tr|F6HT31) tRNA pseudouridine synthase OS=Vitis vinifera
           GN=VIT_02s0012g02420 PE=3 SV=1
          Length = 433

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 240/377 (63%), Positives = 275/377 (72%), Gaps = 22/377 (5%)

Query: 34  MDNHRETENYAHYNHTDPCKHARWNARESYEFMYARPWQRVNDFYLNAVLGNLSLPLLFG 93
           M+N +E + Y HY HT P K +RW ARES++FMY RPWQ+V DFY N V G  SL  L G
Sbjct: 14  MENEKENKVYVHYTHTHPTKFSRWTARESHQFMYKRPWQQVLDFYSNVVTGRCSLLGLLG 73

Query: 94  AEKIHDHNNEPGIPAVSDKPEFESVASRGRGGRWARLTFKIVLSYHGGSFDGWQKQPGLN 153
            E    H+ E  I   SDK EF +V ++ RGGRWARLTFKIVLSYHG SFDGWQKQPGLN
Sbjct: 74  IETHPIHDGE--IVEASDKTEFGNVLTKDRGGRWARLTFKIVLSYHGASFDGWQKQPGLN 131

Query: 154 TVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKGVTALQQVCSFYTWKKDVK 213
           TVQ ++E  LG FVDE K QQLK++ LP+EG VTVAGRTDKGVTALQQVCSFYTWKKDVK
Sbjct: 132 TVQGLVEASLGRFVDERKAQQLKEKNLPVEGMVTVAGRTDKGVTALQQVCSFYTWKKDVK 191

Query: 214 PRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYLYIFPLTDGG----------- 262
            +DIEDAI  AAPGKLRVISVSEVSR FHPNFSAKWR Y YIFPL DG            
Sbjct: 192 VQDIEDAINGAAPGKLRVISVSEVSRIFHPNFSAKWRHYFYIFPLNDGDDGEQISENEMD 251

Query: 263 ---------YKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQKLE 313
                    Y +Q S     ++   N E        + E+  K   FS+S+V++LL++LE
Sbjct: 252 IQKISFNEKYGEQGSECPAQYNGGENTENLIFDDDGEFESRKKPSTFSISRVDQLLRQLE 311

Query: 314 GKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVANRFLR 373
           GKLLSYK+FARDTKASRN GPPTECF++HARA EARL  +D+ E T+VMCIELVANRFLR
Sbjct: 312 GKLLSYKIFARDTKASRNIGPPTECFVFHARATEARLQFSDDGEGTKVMCIELVANRFLR 371

Query: 374 RMVRVLVATSIREAAAG 390
           +MVRVLVATSIREAAAG
Sbjct: 372 KMVRVLVATSIREAAAG 388


>B9SDU2_RICCO (tr|B9SDU2) tRNA pseudouridine synthase OS=Ricinus communis
           GN=RCOM_1712560 PE=3 SV=1
          Length = 443

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 228/362 (62%), Positives = 269/362 (74%), Gaps = 21/362 (5%)

Query: 43  YAHYNHTDPCKHARWNARESYEFMYARPWQRVNDFYLNAVLGNLSLPLLFGAEKIHDHNN 102
           Y HYNHTD CK  RW ARES++FMYARPWQ V+DFY N V G LS   LF ++ +H   +
Sbjct: 34  YFHYNHTDSCKSFRWTARESFQFMYARPWQEVSDFYSNVVNGRLSFLELFRSQ-MHFVRD 92

Query: 103 EPGIPAVSDKPEFESVASRGRGGRWARLTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGP 162
           +  I   S+K E E  ++  R GRWAR+ FKI LSYHGGSFDGWQKQPGLNTVQ ++E  
Sbjct: 93  DAKIQEDSNKTELEHFSNEDRFGRWARVNFKIDLSYHGGSFDGWQKQPGLNTVQGLVEKS 152

Query: 163 LGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIY 222
           LG FVDE K QQLK+   P+EG   VAGRTDKGV+AL+QVCSFYTW+KDV+P +IEDAI 
Sbjct: 153 LGKFVDEKKAQQLKEACKPLEGCAVVAGRTDKGVSALRQVCSFYTWRKDVRPHEIEDAIN 212

Query: 223 HAAPGKLRVISVSEVSRAFHPNFSAKWRRYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEI 282
            +APGK+RVISVSEVSR FHPNFSAKWRRYLYIFP+ DG   +QS  S E  + LR+ E 
Sbjct: 213 SSAPGKIRVISVSEVSRVFHPNFSAKWRRYLYIFPINDGEDSEQSFDS-EDLENLRSYEK 271

Query: 283 HD-------------------SSSKDDLENETKSYMFSVSKVNRLLQKLEGKLLSYKMFA 323
           +D                   +S KD+LE   K  +FS+ +VN+LLQ+LEGKLLSYK+FA
Sbjct: 272 YDEQRNGCAELTSEEHVEELITSDKDELEGAKKPRIFSICRVNQLLQQLEGKLLSYKIFA 331

Query: 324 RDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVANRFLRRMVRVLVATS 383
           RDTKASRN GPPTECF+YHARA EARLP  D+ E  +VMC+ELVANRFLR+MVRVLVATS
Sbjct: 332 RDTKASRNVGPPTECFIYHARATEARLPCPDHGEGRKVMCVELVANRFLRKMVRVLVATS 391

Query: 384 IR 385
           IR
Sbjct: 392 IR 393


>B9N838_POPTR (tr|B9N838) tRNA pseudouridine synthase OS=Populus trichocarpa
           GN=POPTRDRAFT_786197 PE=3 SV=1
          Length = 428

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 232/378 (61%), Positives = 275/378 (72%), Gaps = 33/378 (8%)

Query: 43  YAHYNHTDPCKHARWNARESYEFMYARPWQRVNDFYLNAVLGNLSLPLLFGAE------- 95
           Y  YNHTD CK +RW ARES++FM+ARPWQ V DFY  +V G LSL  LFG +       
Sbjct: 9   YVQYNHTDSCKFSRWTARESFQFMHARPWQEVVDFYSKSVNGQLSLLELFGTQVFFTMEL 68

Query: 96  -KIHDHNNEPGIPAVSDKPEF-ESVASRGRGGRWARLTFKIVLSYHGGSFDGWQKQPGLN 153
            K HD + +  I  VS++    E V++  + GRWAR+TFKIVLSYHGGSFDGWQKQPGLN
Sbjct: 69  KKAHDVHCDDKIEEVSNETGLLEGVSNVDKSGRWARVTFKIVLSYHGGSFDGWQKQPGLN 128

Query: 154 TVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKGVTALQQVCSFYTWKKDVK 213
           TVQ ++E  LG FVDE K QQLK++  P+EG  +VAGRTDKGV+ALQQVCSFYTW+KDVK
Sbjct: 129 TVQGLVEKSLGRFVDEKKAQQLKEQCKPLEGCASVAGRTDKGVSALQQVCSFYTWRKDVK 188

Query: 214 PRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYLYIFPLTDG------------ 261
           P +IEDAI   APGK+RV S+SEVSRAFHPNFSAKWRRYLYIFPL DG            
Sbjct: 189 PHEIEDAINDVAPGKVRVESISEVSRAFHPNFSAKWRRYLYIFPLNDGENREEIEGEGGI 248

Query: 262 -------GYKDQSSGSGEFF--DTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQKL 312
                    + Q +  GE    + + N+ I D   +D+L+   K   FSV +VN+LLQ+L
Sbjct: 249 ENFSSHENCEKQRNECGELASEENVENSIISD---EDELQGAKKPRSFSVCRVNQLLQQL 305

Query: 313 EGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVANRFL 372
           EGKLLSYKMFARDTKASRN GPPTECFLYHARA E RLP  D+++  RVMC+EL+ANRFL
Sbjct: 306 EGKLLSYKMFARDTKASRNVGPPTECFLYHARATETRLPSPDHEKGIRVMCVELIANRFL 365

Query: 373 RRMVRVLVATSIREAAAG 390
           R+MVRVLVATS+REAAAG
Sbjct: 366 RKMVRVLVATSVREAAAG 383


>M5XEM7_PRUPE (tr|M5XEM7) Uncharacterized protein OS=Prunus persica
           GN=PRUPE_ppa006478mg PE=4 SV=1
          Length = 409

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 225/368 (61%), Positives = 262/368 (71%), Gaps = 33/368 (8%)

Query: 39  ETENYAHYNHTDPCKHARWNARESYEFMYARPWQRVNDFYLNAVLGNLSLPLLFGA---E 95
           E +    YNHTDPC  ARW  +E ++FM ARPWQ+V DFY + V     L  L G     
Sbjct: 2   ENKVLIQYNHTDPCSFARWTTKECFQFMSARPWQQVMDFYSDVVKDRKPLSALLGKACLS 61

Query: 96  KIHDHNNEPGIPAVSDKPEFESVASRGRGGRWARLTFKIVLSYHGGSFDGWQKQPGLNTV 155
           K + +N    +P   DK           GGRWARLTFKIV+SYHGGSFDGWQ+QPGLNTV
Sbjct: 62  KSNINNRLESLPPSQDK-----------GGRWARLTFKIVVSYHGGSFDGWQRQPGLNTV 110

Query: 156 QSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKGVTALQQVCSFYTWKKDVKPR 215
           QSV+E  LG FVDE K Q LKD+GLP+EG+  VAGRTDKGVTA+ QVCSFYTW+KDVK +
Sbjct: 111 QSVVEKSLGKFVDERKAQMLKDKGLPLEGAALVAGRTDKGVTAVHQVCSFYTWRKDVKSQ 170

Query: 216 DIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYLYIFPLTDGGYKDQSSGSGE--- 272
           DI DAI  AAPGKLRV+SV+EVSRAFHPNF+AKWR YLYIFP  D    +QS+ SGE   
Sbjct: 171 DITDAINSAAPGKLRVVSVTEVSRAFHPNFTAKWRHYLYIFPFNDEEDMEQSNQSGENAQ 230

Query: 273 FFDTLRNNEIHDS---------------SSKDDLENETKSYMFSVSKVNRLLQKLEGKLL 317
            F +L N   H +               +  +DLE   K   F+VS+VN+LLQKLEGKLL
Sbjct: 231 NFKSLENYHEHKNGCDQCNEANVGNLVINDNEDLET-LKPREFTVSRVNQLLQKLEGKLL 289

Query: 318 SYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVANRFLRRMVR 377
           SYKMFARDTK SRNEGPPTECFLYHARA E++LP +++++  RVMCIELVANRFLRRMVR
Sbjct: 290 SYKMFARDTKPSRNEGPPTECFLYHARAKESKLPCSEHEKGRRVMCIELVANRFLRRMVR 349

Query: 378 VLVATSIR 385
           VLVATSIR
Sbjct: 350 VLVATSIR 357


>R0F4N3_9BRAS (tr|R0F4N3) Uncharacterized protein OS=Capsella rubella
           GN=CARUB_v10004903mg PE=4 SV=1
          Length = 421

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 222/373 (59%), Positives = 264/373 (70%), Gaps = 28/373 (7%)

Query: 43  YAHYNHTDPCKHARWNARESYEFMYARPWQRVNDFYLNAVLGNLSLPLLFGAEK--IHDH 100
           Y HY+H D C  ARWNARE++ FMY RPWQ V DFY NAV GN S+  LF  +K  +HD 
Sbjct: 7   YVHYHHADACSKARWNARETFRFMYDRPWQHVLDFYSNAVEGNTSVLNLFQPKKHLVHDD 66

Query: 101 NNEPGIPAVSDKPEFESVASR-GRGGRWARLTFKIVLSYHGGSFDGWQKQPGLNTVQSVI 159
               GIP  S   E E+   + GR GRW R+ FKIVLSY+G SFDGWQKQP L+TVQ V+
Sbjct: 67  GITEGIPLES---ELETSTRKDGRSGRWERVNFKIVLSYNGTSFDGWQKQPDLHTVQGVV 123

Query: 160 EGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKGVTALQQVCSFYTWKKDVKPRDIED 219
           E  LG FVDE K Q LK +  P+EG V VAGRTDKGV+AL QVCSFYTW+KD++P  IED
Sbjct: 124 EKSLGEFVDEKKAQLLKKKCKPLEGRVLVAGRTDKGVSALNQVCSFYTWRKDIEPIAIED 183

Query: 220 AIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYLYIFPLTD------GGYKDQSSGSGEF 273
           AI   A GKL+V+S+S+VSR+FHPNFSAKWRRYLYIFPL D      GG   ++    E 
Sbjct: 184 AINKDASGKLKVVSISKVSRSFHPNFSAKWRRYLYIFPLDDIEPLCEGGKNHENYIFDEN 243

Query: 274 FDTLRNNEIHDS-------SSKDDLENETKSYM---------FSVSKVNRLLQKLEGKLL 317
            +  RN  + +        S  D+LE E  S           FSVSKV+++LQ+L+GK+L
Sbjct: 244 HEKQRNGLLSEENTEEVVLSEDDELEIEETSKELQVVEKPSDFSVSKVDQILQQLQGKVL 303

Query: 318 SYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVANRFLRRMVR 377
           SYKMFARDTKA+RNEGPPTECF+YHARA E +L  +D+ E  RVMC+ELVANRFLR+MVR
Sbjct: 304 SYKMFARDTKAARNEGPPTECFMYHARAAEIKLSCSDHVEGRRVMCVELVANRFLRKMVR 363

Query: 378 VLVATSIREAAAG 390
           VLVATSIREAAAG
Sbjct: 364 VLVATSIREAAAG 376


>D7MHR9_ARALL (tr|D7MHR9) tRNA pseudouridine synthase OS=Arabidopsis lyrata
           subsp. lyrata GN=ARALYDRAFT_915667 PE=3 SV=1
          Length = 420

 Score =  419 bits (1077), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 221/374 (59%), Positives = 260/374 (69%), Gaps = 30/374 (8%)

Query: 43  YAHYNHTDPCKHARWNARESYEFMYARPWQRVNDFYLNAVLGNLSLPLLFGAEK--IHDH 100
           Y HY+H D C  ARWNARE++ FMY RPW+ V DFY NAV GNLS+  LF  +K  +HD 
Sbjct: 6   YVHYHHADACSKARWNARETFRFMYDRPWKHVLDFYSNAVEGNLSVLNLFQPKKSLVHDD 65

Query: 101 --NNEPGIPAVSDKPEFESVASRGRGGRWARLTFKIVLSYHGGSFDGWQKQPGLNTVQSV 158
             N E  +   S+     S    GR GRW R+ FKIVLSY+G SFDGWQKQP L+TVQ V
Sbjct: 66  GINEEMSLETESET----STRKDGRSGRWERVNFKIVLSYNGTSFDGWQKQPDLHTVQGV 121

Query: 159 IEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKGVTALQQVCSFYTWKKDVKPRDIE 218
           +E  LG FVD+ K Q LK +  P+EG V VAGRTDKGV+AL QVCSFYTW+KD++P  IE
Sbjct: 122 VEKSLGGFVDDRKAQLLKKKCKPLEGRVLVAGRTDKGVSALNQVCSFYTWRKDIEPIAIE 181

Query: 219 DAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYLYIFPLTDGGYKDQSSGSGEFFDTLR 278
           DAI   A GKLRV+S+S+VSR+FHPNFSAKWRRYLYIFPL D     +S  + E F    
Sbjct: 182 DAINKDASGKLRVVSISKVSRSFHPNFSAKWRRYLYIFPLDDAESLHESGENHENFIFDE 241

Query: 279 NNEIHDS-------------SSKDDLENE---------TKSYMFSVSKVNRLLQKLEGKL 316
           N+E   +             S  D+LE E          K   FSV KV++LLQ+L+GK+
Sbjct: 242 NHEKQRNGLLSEENTEEVILSEDDELEIEETSNGLEVVEKPSDFSVIKVDQLLQQLQGKV 301

Query: 317 LSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVANRFLRRMV 376
           LSYKMFARDTKA+RNEGPPTECF+YHARA E RL  +D  E  RVMC+ELVANRFLR+MV
Sbjct: 302 LSYKMFARDTKAARNEGPPTECFMYHARAAEIRLSCSDCVEGRRVMCVELVANRFLRKMV 361

Query: 377 RVLVATSIREAAAG 390
           RVLVATSIREAAAG
Sbjct: 362 RVLVATSIREAAAG 375


>Q8GUL5_ARATH (tr|Q8GUL5) tRNA pseudouridine synthase OS=Arabidopsis thaliana
           GN=AT5G35400 PE=2 SV=1
          Length = 420

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 220/368 (59%), Positives = 258/368 (70%), Gaps = 28/368 (7%)

Query: 43  YAHYNHTDPCKHARWNARESYEFMYARPWQRVNDFYLNAVLGNLSLPLLFGAEKIHDHNN 102
           Y HY+H D C  ARWNARE++ FMY RPWQ V DFY NAV GNLS+  LF  +K   H++
Sbjct: 6   YVHYHHADACSKARWNARETFRFMYDRPWQHVLDFYSNAVEGNLSVLSLFQPKKSLVHDD 65

Query: 103 EPGIPA---VSDKPEFESVASRGRGGRWARLTFKIVLSYHGGSFDGWQKQPGLNTVQSVI 159
             GI     +  +PE  S    GR GRW R+ FKIVLSY+G SFDGWQKQP L+TVQ V+
Sbjct: 66  --GITEEMLLESEPE-TSTRKDGRSGRWERVNFKIVLSYNGASFDGWQKQPDLHTVQGVV 122

Query: 160 EGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKGVTALQQVCSFYTWKKDVKPRDIED 219
           E  LG FVDE K Q LK +  P+EG V VAGRTDKGV+AL QVCSFYTW+KD++P  IED
Sbjct: 123 EKSLGGFVDERKAQLLKKKCKPLEGRVLVAGRTDKGVSALNQVCSFYTWRKDIEPIAIED 182

Query: 220 AIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYLYIFPLTDGGYKDQSSGSGEFF----- 274
           AI   A GKLRV+S+S+VSR+FHPNFSAKWRRYLYIFPL D     +S  + E F     
Sbjct: 183 AINKDASGKLRVVSISKVSRSFHPNFSAKWRRYLYIFPLDDAEPLRKSGENHENFIFDEN 242

Query: 275 -----DTLRNNEIHDS---SSKDDLENETKSYM---------FSVSKVNRLLQKLEGKLL 317
                + L + EI +    S  D+LE E  S           FSVSKV++LLQ L+GK+L
Sbjct: 243 KKKQRNGLLSEEIAEEVIMSEDDELEIEETSNALEVVEKPSDFSVSKVDQLLQHLQGKVL 302

Query: 318 SYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVANRFLRRMVR 377
           SYKMFARDTKA+RNEGPPTECF+YHARA E RL  +D  E  RVMC+ELVANRFLR+MVR
Sbjct: 303 SYKMFARDTKAARNEGPPTECFMYHARAAEIRLSSSDCVEGRRVMCVELVANRFLRKMVR 362

Query: 378 VLVATSIR 385
           VLVATSIR
Sbjct: 363 VLVATSIR 370


>I1GVV0_BRADI (tr|I1GVV0) tRNA pseudouridine synthase OS=Brachypodium distachyon
           GN=BRADI1G31737 PE=3 SV=1
          Length = 410

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 209/365 (57%), Positives = 257/365 (70%), Gaps = 21/365 (5%)

Query: 33  SMDNHRETENYAHYNHTDPCKHARWNARESYEFMYARPWQRVNDFYLNAV---LGNLSLP 89
           S+    E + Y  YNHTD C+H RW A+ESYE+M+ARPW RV DFY   V    G   L 
Sbjct: 14  SVSTAAERDEYPQYNHTDACRHLRWTAKESYEYMHARPWSRVVDFYAMLVRTGAGTAGLA 73

Query: 90  LLF-GAEKIHDHNNEPGIPAVSDKPEFESVASRGRGGRWARLTFKIVLSYHGGSFDGWQK 148
            +F   EK H    +      S + +    +S+ RGGRW RL FKIVLSYHGGSFDGWQK
Sbjct: 74  EMFRKDEKDHISGTDGEDFETSSEKQMAVASSKARGGRWERLNFKIVLSYHGGSFDGWQK 133

Query: 149 QPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKGVTALQQVCSFYTW 208
           QP LNTVQ ++E  LG FVDE K +QL++R LPIEG  TVAGRTDKGVTALQQVCSFYTW
Sbjct: 134 QPDLNTVQGLVEKHLGQFVDERKAKQLQERSLPIEGCATVAGRTDKGVTALQQVCSFYTW 193

Query: 209 KKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYLYIFPLTDGGYKDQSS 268
           + DVKP DI+D I  AAP KL+ + VSEVSR FHPNFSAKWR+YLYIFPL     +D   
Sbjct: 194 RNDVKPSDIKDTINEAAPDKLKSLFVSEVSRQFHPNFSAKWRKYLYIFPLD----QDAEP 249

Query: 269 GSG-EFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQKLEGKLLSYKMFARDTK 327
            SG E    +  N  ++ + +           F V+KV+++++KLEGKLLSYK+FARDT+
Sbjct: 250 ISGKELSSIILENPEYNVTCRS----------FDVAKVDKIIRKLEGKLLSYKIFARDTQ 299

Query: 328 ASRNEGPPTECFLYHARAIEARLPLADND--EETRVMCIELVANRFLRRMVRVLVATSIR 385
           ASR++GP TECF++H+RA  ++L  AD +  E T+VMCIELVA+RFLR+MVRVLVAT+IR
Sbjct: 300 ASRSDGPATECFMFHSRAAVSKLYSADENFKEGTKVMCIELVADRFLRKMVRVLVATAIR 359

Query: 386 EAAAG 390
           EAAAG
Sbjct: 360 EAAAG 364


>M4F387_BRARP (tr|M4F387) tRNA pseudouridine synthase OS=Brassica rapa subsp.
           pekinensis GN=Bra035537 PE=3 SV=1
          Length = 411

 Score =  406 bits (1044), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 225/370 (60%), Positives = 264/370 (71%), Gaps = 31/370 (8%)

Query: 43  YAHYNHTDPCKHARWNARESYEFMYARPWQRVNDFYLNAVLGNLSLPLLFGAEKI--HDH 100
           YAHY+H D C  ARWN RE++ FMY RPWQ V DFY NAV   LS+  LF   KI  HD 
Sbjct: 6   YAHYHHGDACSKARWNTRETFRFMYDRPWQHVLDFYSNAVARKLSVLNLFEPNKILAHDD 65

Query: 101 NNEPGIPAVSDKPEFESVASR-GRGGRWARLTFKIVLSYHGGSFDGWQKQPGLNTVQSVI 159
               G+P    + E E+   + GR GRW R+ FKI+LSY+G SFDGWQKQP L+TVQSV+
Sbjct: 66  GEREGMPL---ETELETCGRKDGRTGRWERVNFKILLSYNGASFDGWQKQPDLHTVQSVV 122

Query: 160 EGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKGVTALQQVCSFYTWKKDVKPRDIED 219
           E  LG FVDE K Q LK +  P+EG V VAGRTDKGV+AL QVCSFYTW+KD++P DIED
Sbjct: 123 EKSLGAFVDEKKAQLLKKKCKPLEGRVLVAGRTDKGVSALNQVCSFYTWRKDIEPIDIED 182

Query: 220 AIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYLYIFPLTDGGYKDQSSGSGEFFDTL-- 277
           AI   A GKLRV+SVS+VSR FHPNFSAKWRRYLYIFPL      D + GSG+  + L  
Sbjct: 183 AINKDASGKLRVVSVSKVSREFHPNFSAKWRRYLYIFPL------DHACGSGKDRENLIF 236

Query: 278 -------RNNEIHDSSSK------DDLENE----TKSYMFSVSKVNRLLQKLEGKLLSYK 320
                  RN  + + +++      D+LE E     K   FSVSKV++LLQ+L+GKLLSYK
Sbjct: 237 DENLGKQRNGLLSEENTEGVGEKDDELETEEVDGAKPSDFSVSKVDQLLQQLQGKLLSYK 296

Query: 321 MFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVANRFLRRMVRVLV 380
           MFARD KA+RNEGPPTECF+YHARA E RLP  +  E  RVMC+ELVANRFLR+MVRVLV
Sbjct: 297 MFARDLKAARNEGPPTECFMYHARAAEIRLPSPEYVEGRRVMCVELVANRFLRKMVRVLV 356

Query: 381 ATSIREAAAG 390
           ATSIREAAAG
Sbjct: 357 ATSIREAAAG 366


>M0VMG5_HORVD (tr|M0VMG5) tRNA pseudouridine synthase OS=Hordeum vulgare var.
           distichum PE=3 SV=1
          Length = 417

 Score =  406 bits (1044), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 206/355 (58%), Positives = 250/355 (70%), Gaps = 24/355 (6%)

Query: 39  ETENYAHYNHTDPCKHARWNARESYEFMYARPWQRVNDFYLNAV---LGNLSLPLLF-GA 94
           E + YA YNHTD C+H RW ARESYE+MYARPW RV DFY   V    G   L  LF   
Sbjct: 28  ERDGYAQYNHTDACQHLRWTARESYEYMYARPWSRVVDFYAELVRTGAGAAGLAELFRKD 87

Query: 95  EKIHDHNNEPGIPAVSDKPEFESVASRGRGGRWARLTFKIVLSYHGGSFDGWQKQPGLNT 154
           EK H  +     P  S + +    +S+GRGGRW R  FKIVLSYHGGSFDGWQKQP LNT
Sbjct: 88  EKDHTRDTNGEEPLASSEEQMSVKSSKGRGGRWERANFKIVLSYHGGSFDGWQKQPALNT 147

Query: 155 VQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKGVTALQQVCSFYTWKKDVKP 214
           VQ ++E  LG FVDE K +QL++R LP+EG  TVAGRTDKGVTALQQVCSFYTW+KD++P
Sbjct: 148 VQGLVEKHLGQFVDERKAKQLQERSLPVEGCATVAGRTDKGVTALQQVCSFYTWRKDIQP 207

Query: 215 RDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYLYIFPLTDGGYKDQSSGSGEFF 274
            DI+D+I  AAP K++ + VSEVSR FHPNFSAKWRRYLYIFPL +    D    SG+  
Sbjct: 208 DDIKDSINEAAPDKIKSLVVSEVSREFHPNFSAKWRRYLYIFPLDE----DAKPISGDEL 263

Query: 275 DT--LRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQKLEGKLLSYKMFARDTKASRNE 332
            +  L N E   S S            F V+KV++++++LEGK+LSYK+FARDT+ASR++
Sbjct: 264 SSMILENPEYKASRS------------FDVAKVDKIIRQLEGKMLSYKIFARDTQASRSD 311

Query: 333 GPPTECFLYHARAIEARLPLADND--EETRVMCIELVANRFLRRMVRVLVATSIR 385
           GP  ECF++H+RA   +L  AD +  E   VMCIELVANRFLR+MVRVLVAT+IR
Sbjct: 312 GPAAECFMFHSRAALTKLYSADENCKEGATVMCIELVANRFLRKMVRVLVATTIR 366


>K3XX61_SETIT (tr|K3XX61) tRNA pseudouridine synthase OS=Setaria italica
           GN=Si006519m.g PE=3 SV=1
          Length = 422

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 204/353 (57%), Positives = 246/353 (69%), Gaps = 20/353 (5%)

Query: 39  ETENYAHYNHTDPCKHARWNARESYEFMYARPWQRVNDFYLNAV---LGNLSLPLLFGA- 94
           E + + HY HTD C H RW A+ESYE+MYARPW RV DFY   V    G   L  LFG  
Sbjct: 33  ERDEHVHYKHTDACHHLRWTAKESYEYMYARPWSRVVDFYAELVRTGAGAAGLAKLFGKD 92

Query: 95  EKIHDHNNEPGIPAVSDKPEFESVASRGRGGRWARLTFKIVLSYHGGSFDGWQKQPGLNT 154
           EK +  +          + +  +++S+ RGGRW R+TFKIVLSYHGGSFDGWQKQPGLNT
Sbjct: 93  EKDYSLDTTGENYLAPSEKQTATISSKDRGGRWERVTFKIVLSYHGGSFDGWQKQPGLNT 152

Query: 155 VQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKGVTALQQVCSFYTWKKDVKP 214
           VQ ++E  LG FVDE K +QL+ R LPIEG   VAGRTDKGVTALQQVCSFYTW+KDVK 
Sbjct: 153 VQGLVEKHLGQFVDERKAKQLEARSLPIEGGAIVAGRTDKGVTALQQVCSFYTWRKDVKS 212

Query: 215 RDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYLYIFPLTDGGYKDQSSGSGEFF 274
            DI+DAI  AAP KL+ + VSEV+R FHPNF+AKWRRY+YIFPL +        G  E  
Sbjct: 213 EDIKDAIKEAAPDKLKPLHVSEVAREFHPNFAAKWRRYMYIFPLDEDAKSIIGEGHSE-- 270

Query: 275 DTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQKLEGKLLSYKMFARDTKASRNEGP 334
             L+N+           E+  K   F V+KV+ +L+KL GK LSYKMFARDT+ASR+ GP
Sbjct: 271 -VLKNS-----------EHIIKPQSFDVAKVDEILRKLAGKTLSYKMFARDTQASRSVGP 318

Query: 335 PTECFLYHARAIEARLPLADND--EETRVMCIELVANRFLRRMVRVLVATSIR 385
           PTECF++H+RA  A+L  A+ D  E   VMC+ELVANRFLR+MVRVLVAT+IR
Sbjct: 319 PTECFMFHSRAAAAKLYCANEDYKEGLSVMCVELVANRFLRKMVRVLVATAIR 371


>I1Q4D2_ORYGL (tr|I1Q4D2) tRNA pseudouridine synthase OS=Oryza glaberrima PE=3
           SV=1
          Length = 422

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 205/353 (58%), Positives = 246/353 (69%), Gaps = 24/353 (6%)

Query: 39  ETENYAHYNHTDPCKHARWNARESYEFMYARPWQRVNDFYLNAV---LGNLSLPLLFGAE 95
           E + +AHYNHTD C H RW A+ESYE+MYARPW RV DFY   V    G   L  LFG +
Sbjct: 31  EGDEHAHYNHTDACHHLRWTAKESYEYMYARPWSRVVDFYAELVRTGAGAAGLADLFGKD 90

Query: 96  K---IHDHNNEPGIPAVSDKPEFESVASRGRGGRWARLTFKIVLSYHGGSFDGWQKQPGL 152
           +     D N E       ++   +S  S+ RGGRW R+TFKIVLSYHGGSFDGWQKQPGL
Sbjct: 91  ENGYSLDTNGEDYTAPSENQTSTKS--SKDRGGRWERVTFKIVLSYHGGSFDGWQKQPGL 148

Query: 153 NTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKGVTALQQVCSFYTWKKDV 212
           NTVQ ++E  LG FVDE K +QL+ R LP+EG   VAGRTDKGVTALQQVCSFYTW+KDV
Sbjct: 149 NTVQGLVEKHLGQFVDEKKAKQLEARSLPLEGCAVVAGRTDKGVTALQQVCSFYTWRKDV 208

Query: 213 KPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYLYIFPLTDGGYKDQSSGSGE 272
           K  DI+DAI  AAP KLR + VS+VSR FHPNF+AKWRRYLYIFPL +            
Sbjct: 209 KSSDIKDAINKAAPDKLRPLHVSQVSREFHPNFAAKWRRYLYIFPLDEDV---------- 258

Query: 273 FFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQKLEGKLLSYKMFARDTKASRNE 332
               L + E   + + +  E   K   F V KV++++++LEGK LSYKMFARDT+ASR+ 
Sbjct: 259 ---KLISGEEQSAKTVEGPECNIKPQSFDVGKVDKIIRQLEGKSLSYKMFARDTQASRSV 315

Query: 333 GPPTECFLYHARAIEARLPLADNDEE---TRVMCIELVANRFLRRMVRVLVAT 382
           GPPTECF++H+RA  A+L  AD + E   TR +CIELVANRFLR+MVRVLVAT
Sbjct: 316 GPPTECFMFHSRAAVAKLHTADENCEEGTTRAICIELVANRFLRKMVRVLVAT 368


>Q654A2_ORYSJ (tr|Q654A2) tRNA pseudouridine synthase OS=Oryza sativa subsp.
           japonica GN=OSJNBb0065C04.26 PE=2 SV=1
          Length = 495

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 205/353 (58%), Positives = 246/353 (69%), Gaps = 24/353 (6%)

Query: 39  ETENYAHYNHTDPCKHARWNARESYEFMYARPWQRVNDFYLNAV---LGNLSLPLLFGAE 95
           E + +AHYNHTD C H RW A+ESYE+MYARPW RV DFY   V    G   L  LFG +
Sbjct: 26  EGDEHAHYNHTDACHHLRWTAKESYEYMYARPWSRVVDFYAELVRTGAGAAGLADLFGKD 85

Query: 96  K---IHDHNNEPGIPAVSDKPEFESVASRGRGGRWARLTFKIVLSYHGGSFDGWQKQPGL 152
           +     D N E       ++   +S  S+ RGGRW R+TFKIVLSYHGGSFDGWQKQPGL
Sbjct: 86  ENGYSLDTNGEDYTAPSENQTSTKS--SKDRGGRWERVTFKIVLSYHGGSFDGWQKQPGL 143

Query: 153 NTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKGVTALQQVCSFYTWKKDV 212
           NTVQ ++E  LG FVDE K +QL+ R LP+EG   VAGRTDKGVTALQQVCSFYTW+KDV
Sbjct: 144 NTVQGLVEKHLGQFVDEKKAKQLEARSLPLEGCAVVAGRTDKGVTALQQVCSFYTWRKDV 203

Query: 213 KPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYLYIFPLTDGGYKDQSSGSGE 272
           K  DI+DAI  AAP KLR + VS+VSR FHPNF+AKWRRYLYIFPL +            
Sbjct: 204 KSSDIKDAINKAAPDKLRPLHVSQVSREFHPNFAAKWRRYLYIFPLDEDV---------- 253

Query: 273 FFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQKLEGKLLSYKMFARDTKASRNE 332
               L + E   + + +  E   K   F V KV++++++LEGK LSYKMFARDT+ASR+ 
Sbjct: 254 ---KLISGEEQSAKTVEGPECNIKPQSFDVGKVDKIIRQLEGKSLSYKMFARDTQASRSV 310

Query: 333 GPPTECFLYHARAIEARLPLADNDEE---TRVMCIELVANRFLRRMVRVLVAT 382
           GPPTECF++H+RA  A+L  AD + E   TR +CIELVANRFLR+MVRVLVAT
Sbjct: 311 GPPTECFMFHSRAAVAKLHTADENCEEGTTRAICIELVANRFLRKMVRVLVAT 363


>A3BEB6_ORYSJ (tr|A3BEB6) tRNA pseudouridine synthase OS=Oryza sativa subsp.
           japonica GN=OsJ_22255 PE=3 SV=1
          Length = 417

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 205/353 (58%), Positives = 246/353 (69%), Gaps = 24/353 (6%)

Query: 39  ETENYAHYNHTDPCKHARWNARESYEFMYARPWQRVNDFYLNAV---LGNLSLPLLFGAE 95
           E + +AHYNHTD C H RW A+ESYE+MYARPW RV DFY   V    G   L  LFG +
Sbjct: 26  EGDEHAHYNHTDACHHLRWTAKESYEYMYARPWSRVVDFYAELVRTGAGAAGLADLFGKD 85

Query: 96  K---IHDHNNEPGIPAVSDKPEFESVASRGRGGRWARLTFKIVLSYHGGSFDGWQKQPGL 152
           +     D N E       ++   +S  S+ RGGRW R+TFKIVLSYHGGSFDGWQKQPGL
Sbjct: 86  ENGYSLDTNGEDYTAPSENQTSTKS--SKDRGGRWERVTFKIVLSYHGGSFDGWQKQPGL 143

Query: 153 NTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKGVTALQQVCSFYTWKKDV 212
           NTVQ ++E  LG FVDE K +QL+ R LP+EG   VAGRTDKGVTALQQVCSFYTW+KDV
Sbjct: 144 NTVQGLVEKHLGQFVDEKKAKQLEARSLPLEGCAVVAGRTDKGVTALQQVCSFYTWRKDV 203

Query: 213 KPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYLYIFPLTDGGYKDQSSGSGE 272
           K  DI+DAI  AAP KLR + VS+VSR FHPNF+AKWRRYLYIFPL +            
Sbjct: 204 KSSDIKDAINKAAPDKLRPLHVSQVSREFHPNFAAKWRRYLYIFPLDEDV---------- 253

Query: 273 FFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQKLEGKLLSYKMFARDTKASRNE 332
               L + E   + + +  E   K   F V KV++++++LEGK LSYKMFARDT+ASR+ 
Sbjct: 254 ---KLISGEEQSAKTVEGPECNIKPQSFDVGKVDKIIRQLEGKSLSYKMFARDTQASRSV 310

Query: 333 GPPTECFLYHARAIEARLPLADNDEE---TRVMCIELVANRFLRRMVRVLVAT 382
           GPPTECF++H+RA  A+L  AD + E   TR +CIELVANRFLR+MVRVLVAT
Sbjct: 311 GPPTECFMFHSRAAVAKLHTADENCEEGTTRAICIELVANRFLRKMVRVLVAT 363


>A2YFW6_ORYSI (tr|A2YFW6) tRNA pseudouridine synthase OS=Oryza sativa subsp.
           indica GN=OsI_24011 PE=2 SV=1
          Length = 417

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 205/353 (58%), Positives = 246/353 (69%), Gaps = 24/353 (6%)

Query: 39  ETENYAHYNHTDPCKHARWNARESYEFMYARPWQRVNDFYLNAV---LGNLSLPLLFGAE 95
           E + +AHYNHTD C H RW A+ESYE+MYARPW RV DFY   V    G   L  LFG +
Sbjct: 26  EGDEHAHYNHTDACHHLRWTAKESYEYMYARPWSRVVDFYAELVRTGAGAAGLADLFGKD 85

Query: 96  K---IHDHNNEPGIPAVSDKPEFESVASRGRGGRWARLTFKIVLSYHGGSFDGWQKQPGL 152
           +     D N E       ++   +S  S+ RGGRW R+TFKIVLSYHGGSFDGWQKQPGL
Sbjct: 86  ENGYSLDTNGEDYTAPSENQTSTKS--SKDRGGRWERVTFKIVLSYHGGSFDGWQKQPGL 143

Query: 153 NTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKGVTALQQVCSFYTWKKDV 212
           NTVQ ++E  LG FVDE K +QL+ R LP+EG   VAGRTDKGVTALQQVCSFYTW+KDV
Sbjct: 144 NTVQGLVEKHLGQFVDEKKAKQLEARSLPLEGCAVVAGRTDKGVTALQQVCSFYTWRKDV 203

Query: 213 KPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYLYIFPLTDGGYKDQSSGSGE 272
           K  DI+DAI  AAP KLR + VS+VSR FHPNF+AKWRRYLYIFPL +            
Sbjct: 204 KSSDIKDAINKAAPDKLRPLHVSQVSREFHPNFAAKWRRYLYIFPLDEDV---------- 253

Query: 273 FFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQKLEGKLLSYKMFARDTKASRNE 332
               L + E   + + +  E   K   F V KV++++++LEGK LSYKMFARDT+ASR+ 
Sbjct: 254 ---KLISGEEQSAKTVEGPECNIKPQSFDVGKVDKIIRQLEGKSLSYKMFARDTQASRSV 310

Query: 333 GPPTECFLYHARAIEARLPLADNDEE---TRVMCIELVANRFLRRMVRVLVAT 382
           GPPTECF++H+RA  A+L  AD + E   TR +CIELVANRFLR+MVRVLVAT
Sbjct: 311 GPPTECFMFHSRAAVAKLHTADENCEEGTTRAICIELVANRFLRKMVRVLVAT 363


>J3MGK7_ORYBR (tr|J3MGK7) tRNA pseudouridine synthase OS=Oryza brachyantha
           GN=OB06G31510 PE=3 SV=1
          Length = 422

 Score =  396 bits (1017), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 206/350 (58%), Positives = 247/350 (70%), Gaps = 23/350 (6%)

Query: 41  ENYAHYNHTDPCKHARWNARESYEFMYARPWQRVNDFYLNAVL---GNLSLPLLFGAEKI 97
           + +  YNHTD C H RW A+ESYE+MYARPW RV DFY   V    G   L  LFG ++I
Sbjct: 34  DGHVQYNHTDACHHLRWTAKESYEYMYARPWSRVVDFYAELVCTGAGAAGLADLFGKDEI 93

Query: 98  H---DHNNEPGIPAVSDKPEFESVASRGRGGRWARLTFKIVLSYHGGSFDGWQKQPGLNT 154
               D N +   P    +   +   S+ RGGRW R+TFKIVLSYHGGSFDGWQKQPGLNT
Sbjct: 94  DYTLDANRDDCTPPSEKQASMKP--SKDRGGRWERVTFKIVLSYHGGSFDGWQKQPGLNT 151

Query: 155 VQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKGVTALQQVCSFYTWKKDVKP 214
           VQ ++E  LG FVDE K +QL+ R LPIEG   VAGRTDKGVTALQQVCSFYTW+KDVK 
Sbjct: 152 VQGLVEKHLGQFVDEKKAKQLEARSLPIEGCAIVAGRTDKGVTALQQVCSFYTWRKDVKS 211

Query: 215 RDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYLYIFPLTDGGYKDQSSGSGEFF 274
           RDI+DAI  A P KLR++ VSEVSR FHPNF+AKWRRYLYIFPL +    D    SGE  
Sbjct: 212 RDIKDAINKATPDKLRLLHVSEVSREFHPNFAAKWRRYLYIFPLDE----DAKPISGE-- 265

Query: 275 DTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQKLEGKLLSYKMFARDTKASRNEGP 334
              + ++I + S     E   K   F+V KV++++++LEGK LSYKMFARDT+ASR+ GP
Sbjct: 266 --EQPSKILEGS-----EYNIKPQSFNVVKVDKIIRQLEGKSLSYKMFARDTQASRSVGP 318

Query: 335 PTECFLYHARAIEARLPLADN--DEETRVMCIELVANRFLRRMVRVLVAT 382
           PTECF++H+RA   +L  AD   +E  R +CIELVANRFLR+MVRVLVAT
Sbjct: 319 PTECFMFHSRASVVKLHSADENCEEGMRAICIELVANRFLRKMVRVLVAT 368


>F4JZU2_ARATH (tr|F4JZU2) tRNA pseudouridine synthase OS=Arabidopsis thaliana
           GN=AT5G35400 PE=2 SV=1
          Length = 471

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 220/419 (52%), Positives = 258/419 (61%), Gaps = 79/419 (18%)

Query: 43  YAHYNHTDPCKHARWNARESYEFMYARPWQRVNDFYLNAVLGNLSLPLLFGAEKIHDHNN 102
           Y HY+H D C  ARWNARE++ FMY RPWQ V DFY NAV GNLS+  LF  +K   H++
Sbjct: 6   YVHYHHADACSKARWNARETFRFMYDRPWQHVLDFYSNAVEGNLSVLSLFQPKKSLVHDD 65

Query: 103 EPGIPA---VSDKPEFESVASRGRGGRWARLTFKIVLSYHGGSFDGWQKQPGLNTVQSVI 159
             GI     +  +PE  S    GR GRW R+ FKIVLSY+G SFDGWQKQP L+TVQ V+
Sbjct: 66  --GITEEMLLESEPE-TSTRKDGRSGRWERVNFKIVLSYNGASFDGWQKQPDLHTVQGVV 122

Query: 160 EGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKGVTALQQVCSFYTWKKDVKPRDIED 219
           E  LG FVDE K Q LK +  P+EG V VAGRTDKGV+AL QVCSFYTW+KD++P  IED
Sbjct: 123 EKSLGGFVDERKAQLLKKKCKPLEGRVLVAGRTDKGVSALNQVCSFYTWRKDIEPIAIED 182

Query: 220 AIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYLYIFPLTDGGYKDQSSGSGEFF----- 274
           AI   A GKLRV+S+S+VSR+FHPNFSAKWRRYLYIFPL D     +S  + E F     
Sbjct: 183 AINKDASGKLRVVSISKVSRSFHPNFSAKWRRYLYIFPLDDAEPLRKSGENHENFIFDEN 242

Query: 275 -----DTLRNNEIHDS---SSKDDLENETKSYM---------FSVSKVNRLLQKLEGKLL 317
                + L + EI +    S  D+LE E  S           FSVSKV++LLQ L+GK+L
Sbjct: 243 KKKQRNGLLSEEIAEEVIMSEDDELEIEETSNALEVVEKPSDFSVSKVDQLLQHLQGKVL 302

Query: 318 SYKMFARDTKASRNEGPPTECFLYHARAIEARLP-------------------------- 351
           SYKMFARDTKA+RNEGPPTECF+YHARA E RL                           
Sbjct: 303 SYKMFARDTKAARNEGPPTECFMYHARAAEIRLSSSVVHFVAWVFGGSIVLVILATEGST 362

Query: 352 -------------------------LADNDEETRVMCIELVANRFLRRMVRVLVATSIR 385
                                     +D  E  RVMC+ELVANRFLR+MVRVLVATSIR
Sbjct: 363 LDLTDTKLYIASWFLIKRSCEFLFIASDCVEGRRVMCVELVANRFLRKMVRVLVATSIR 421


>K7UHY3_MAIZE (tr|K7UHY3) tRNA pseudouridine synthase OS=Zea mays
           GN=ZEAMMB73_642909 PE=3 SV=1
          Length = 422

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 206/357 (57%), Positives = 247/357 (69%), Gaps = 25/357 (7%)

Query: 39  ETENYAHYNHTDPCKHARWNARESYEFMYARPWQRVNDFYLNAV---LGNLSLPLLFGAE 95
           E E + HY HTD C   RW A+ESYE+MYARPW RV DFY   V    G   L  LFG +
Sbjct: 32  ELEEHVHYKHTDACHQLRWTAKESYEYMYARPWSRVVDFYAELVRAGAGAAGLAKLFGND 91

Query: 96  K----IHDHNNEPGIPAVSDKPEFESVASRGRGGRWARLTFKIVLSYHGGSFDGWQKQPG 151
           +    ++        P  S+KP   +  S+GRGGRW R+TFK+V+SYHGGSFDGWQKQPG
Sbjct: 92  EKDYTLYTAGENYLTP--SEKPT-TTTFSKGRGGRWERVTFKVVISYHGGSFDGWQKQPG 148

Query: 152 LNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKGVTALQQVCSFYTWKKD 211
           LNTVQ ++E  LG FVDE K +QL+ R LPIEG   VAGRTDKGVTALQQVCSFYTW+KD
Sbjct: 149 LNTVQGLVEKHLGQFVDERKAKQLEARSLPIEGCAIVAGRTDKGVTALQQVCSFYTWRKD 208

Query: 212 VKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYLYIFPLTDGGYKDQSSGSG 271
           VK  DI+ AI  AAP KL+ + VSEVSR FHPNF+AKWRRY+YIFPL +    D   G  
Sbjct: 209 VKSGDIKGAINEAAPDKLKPLHVSEVSREFHPNFAAKWRRYMYIFPLDEDA--DLILGEA 266

Query: 272 EFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQKLEGKLLSYKMFARDTKASRN 331
           +   TL N+           E+  K   F VSKV+ +L+ L GK LSYKMFARDT+ASR+
Sbjct: 267 QSSKTLENS-----------EHNIKPQSFDVSKVDEILKPLAGKTLSYKMFARDTQASRS 315

Query: 332 EGPPTECFLYHARAIEARLPLADNDEE--TRVMCIELVANRFLRRMVRVLVATSIRE 386
            GPPTECF++H+RA  A+L  A+ D +    VMC+ELVANRFLR+MVRVLVAT+IRE
Sbjct: 316 VGPPTECFMFHSRAAVAKLHSANEDHKGGMVVMCVELVANRFLRKMVRVLVATAIRE 372


>B4FNC8_MAIZE (tr|B4FNC8) tRNA pseudouridine synthase OS=Zea mays PE=2 SV=1
          Length = 414

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 206/357 (57%), Positives = 247/357 (69%), Gaps = 25/357 (7%)

Query: 39  ETENYAHYNHTDPCKHARWNARESYEFMYARPWQRVNDFYLNAV---LGNLSLPLLFGAE 95
           E E + HY HTD C   RW A+ESYE+MYARPW RV DFY   V    G   L  LFG +
Sbjct: 24  ELEEHVHYKHTDACHQLRWTAKESYEYMYARPWSRVVDFYAELVRAGAGAAGLAKLFGND 83

Query: 96  K----IHDHNNEPGIPAVSDKPEFESVASRGRGGRWARLTFKIVLSYHGGSFDGWQKQPG 151
           +    ++        P  S+KP   +  S+GRGGRW R+TFK+V+SYHGGSFDGWQKQPG
Sbjct: 84  EKDYTLYTAGENYLTP--SEKPT-TTTFSKGRGGRWERVTFKVVISYHGGSFDGWQKQPG 140

Query: 152 LNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKGVTALQQVCSFYTWKKD 211
           LNTVQ ++E  LG FVDE K +QL+ R LPIEG   VAGRTDKGVTALQQVCSFYTW+KD
Sbjct: 141 LNTVQGLVEKHLGQFVDERKAKQLEARSLPIEGCAIVAGRTDKGVTALQQVCSFYTWRKD 200

Query: 212 VKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYLYIFPLTDGGYKDQSSGSG 271
           VK  DI+ AI  AAP KL+ + VSEVSR FHPNF+AKWRRY+YIFPL +    D   G  
Sbjct: 201 VKSGDIKGAINEAAPDKLKPLHVSEVSREFHPNFAAKWRRYMYIFPLDEDA--DLILGEA 258

Query: 272 EFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQKLEGKLLSYKMFARDTKASRN 331
           +   TL N+           E+  K   F VSKV+ +L+ L GK LSYKMFARDT+ASR+
Sbjct: 259 QSSKTLENS-----------EHNIKPQSFDVSKVDEILKPLAGKTLSYKMFARDTQASRS 307

Query: 332 EGPPTECFLYHARAIEARLPLADNDEE--TRVMCIELVANRFLRRMVRVLVATSIRE 386
            GPPTECF++H+RA  A+L  A+ D +    VMC+ELVANRFLR+MVRVLVAT+IRE
Sbjct: 308 VGPPTECFMFHSRAAVAKLHSANEDHKGGMVVMCVELVANRFLRKMVRVLVATAIRE 364


>I1GVU9_BRADI (tr|I1GVU9) tRNA pseudouridine synthase OS=Brachypodium distachyon
           GN=BRADI1G31737 PE=3 SV=1
          Length = 365

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 195/355 (54%), Positives = 245/355 (69%), Gaps = 21/355 (5%)

Query: 33  SMDNHRETENYAHYNHTDPCKHARWNARESYEFMYARPWQRVNDFYLNAV---LGNLSLP 89
           S+    E + Y  YNHTD C+H RW A+ESYE+M+ARPW RV DFY   V    G   L 
Sbjct: 14  SVSTAAERDEYPQYNHTDACRHLRWTAKESYEYMHARPWSRVVDFYAMLVRTGAGTAGLA 73

Query: 90  LLF-GAEKIHDHNNEPGIPAVSDKPEFESVASRGRGGRWARLTFKIVLSYHGGSFDGWQK 148
            +F   EK H    +      S + +    +S+ RGGRW RL FKIVLSYHGGSFDGWQK
Sbjct: 74  EMFRKDEKDHISGTDGEDFETSSEKQMAVASSKARGGRWERLNFKIVLSYHGGSFDGWQK 133

Query: 149 QPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKGVTALQQVCSFYTW 208
           QP LNTVQ ++E  LG FVDE K +QL++R LPIEG  TVAGRTDKGVTALQQVCSFYTW
Sbjct: 134 QPDLNTVQGLVEKHLGQFVDERKAKQLQERSLPIEGCATVAGRTDKGVTALQQVCSFYTW 193

Query: 209 KKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYLYIFPLTDGGYKDQSS 268
           + DVKP DI+D I  AAP KL+ + VSEVSR FHPNFSAKWR+YLYIFPL     +D   
Sbjct: 194 RNDVKPSDIKDTINEAAPDKLKSLFVSEVSRQFHPNFSAKWRKYLYIFPLD----QDAEP 249

Query: 269 GSG-EFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQKLEGKLLSYKMFARDTK 327
            SG E    +  N  ++ + +           F V+KV+++++KLEGKLLSYK+FARDT+
Sbjct: 250 ISGKELSSIILENPEYNVTCRS----------FDVAKVDKIIRKLEGKLLSYKIFARDTQ 299

Query: 328 ASRNEGPPTECFLYHARAIEARLPLADND--EETRVMCIELVANRFLRRMVRVLV 380
           ASR++GP TECF++H+RA  ++L  AD +  E T+VMCIELVA+RFLR++++  V
Sbjct: 300 ASRSDGPATECFMFHSRAAVSKLYSADENFKEGTKVMCIELVADRFLRKVIQQTV 354


>M8B639_AEGTA (tr|M8B639) Protein kinase APK1B, chloroplastic OS=Aegilops
           tauschii GN=F775_01875 PE=4 SV=1
          Length = 914

 Score =  369 bits (947), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 198/338 (58%), Positives = 237/338 (70%), Gaps = 29/338 (8%)

Query: 61  ESYEFMYARPWQRVNDFYLNAV---LGNLSLPLLFGAEKI------HDHNNEPGIPAVSD 111
           ESYE+MYARPW RV DFY   V    G   L  LF  ++I      H  +     P  S 
Sbjct: 542 ESYEYMYARPWSRVVDFYAELVRTGAGAAGLAELFRKDEIFRPQKDHTRDTNGEEPLTSS 601

Query: 112 KPEFESVASRGRGGRWARLTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENK 171
             +    +S+ RGGRW R  FKIVLSYHGGSFDGWQKQP LNTVQ ++E  LG FVDE K
Sbjct: 602 GKQMSVKSSKARGGRWERANFKIVLSYHGGSFDGWQKQPDLNTVQGLVEKHLGQFVDERK 661

Query: 172 TQQLKDRGLPIEGSVTVAGRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRV 231
            +QL++R LPIEG  TVAGRTDKGVTALQQVCSFYTW+KDV+P DI+D I  AAP K++ 
Sbjct: 662 AKQLQERSLPIEGCATVAGRTDKGVTALQQVCSFYTWRKDVQPGDIKDTINEAAPDKIKS 721

Query: 232 ISVSEVSRAFHPNFSAKWRRYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDL 291
           + VSEVSR FHPNFSAKWRRYLYIFPL DG   D +S S             D  S   L
Sbjct: 722 LVVSEVSREFHPNFSAKWRRYLYIFPL-DG---DATSIS------------EDEQSSTIL 765

Query: 292 EN-ETKS-YMFSVSKVNRLLQKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEAR 349
           EN E K+   F V+KV++++++LEGK+LSYK+FARDT+ASR++GP TECF+YH+RA   +
Sbjct: 766 ENPELKAPQSFDVAKVDKIIRQLEGKMLSYKIFARDTQASRSDGPATECFMYHSRAAVTK 825

Query: 350 LPLADND--EETRVMCIELVANRFLRRMVRVLVATSIR 385
           L  AD +  E T VMC+ELVANRFLR+MVRVLVAT+IR
Sbjct: 826 LYSADENCKEGTTVMCVELVANRFLRKMVRVLVATTIR 863


>D5AA47_PICSI (tr|D5AA47) tRNA pseudouridine synthase OS=Picea sitchensis PE=2
           SV=1
          Length = 448

 Score =  359 bits (921), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 196/385 (50%), Positives = 252/385 (65%), Gaps = 28/385 (7%)

Query: 30  ISSSMDNHRETENYAHYNHTDPCKHARWNARESYEFMYARPWQRVNDFYLNAVLGNLSLP 89
           + + +DN +    + HY+H D C+  RW A+ESY ++Y RPW+ V DFY +   G LSL 
Sbjct: 24  MRTDVDNEKP---HVHYDHQDDCREFRWTAKESYAYLYDRPWEEVMDFYSHLAAGRLSLS 80

Query: 90  LLFGAEKIHDHNNEP----GIPAVSDKPEFESVASRGRGGRWARLTFKIVLSYHGGSFDG 145
            L   E    +   P     +P+ +     E+ + + +GG+WAR TFKIVLSY G  FDG
Sbjct: 81  DLVFHESKKGNVARPYGNAAVPSCTGIL-LENNSKKPKGGKWARRTFKIVLSYDGNLFDG 139

Query: 146 WQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKGVTALQQVCSF 205
           WQKQPG+NTVQ ++E  LG FVDE K Q+L+ +   +E +V VAGRTDKGV+A QQVCSF
Sbjct: 140 WQKQPGMNTVQGLVEKSLGKFVDEKKAQELEAKKASVEAAVAVAGRTDKGVSAFQQVCSF 199

Query: 206 YTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYLYIFPLTDG-GYK 264
           YTW+KD    DIE  I  AA GKL+V+S+SEVSR FHPNFSAKWRRYLYI PL DG G K
Sbjct: 200 YTWRKDTSLEDIESEINAAALGKLKVVSISEVSREFHPNFSAKWRRYLYILPLKDGEGNK 259

Query: 265 D-QSSGSGEFFDTL---------------RNNEIHDSSSKDDLENETKSYMFSVSKVNRL 308
                GS   +D+L                N E  + S+    +   K + F+V  VN+L
Sbjct: 260 TVVDGGSPVTYDSLCLADEGGNQSTDMNVINMEAMNISATGKHQASVKPHNFNVDTVNQL 319

Query: 309 LQKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETR---VMCIE 365
           LQ+LEG+ LSY++FARDT+ASR+ GP TECF++HARA  A LP    D  ++   VMC+E
Sbjct: 320 LQQLEGQSLSYRIFARDTQASRSRGPATECFMHHARAAVATLPYMGQDHTSKGRTVMCVE 379

Query: 366 LVANRFLRRMVRVLVATSIREAAAG 390
           LVANRFLR+MVRVLVAT++REAAAG
Sbjct: 380 LVANRFLRKMVRVLVATAVREAAAG 404


>M0SIE3_MUSAM (tr|M0SIE3) Uncharacterized protein OS=Musa acuminata subsp.
           malaccensis PE=4 SV=1
          Length = 825

 Score =  341 bits (874), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 175/301 (58%), Positives = 212/301 (70%), Gaps = 21/301 (6%)

Query: 107 PAVSDKPEFESVASRGRGGRWARLTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTF 166
           P   ++ E  +  S+ R GRW RLTFKIVLSYHGG+FDGWQKQPGL+TVQ ++E  LG F
Sbjct: 476 PCGCEETETSTEPSKHRTGRWKRLTFKIVLSYHGGTFDGWQKQPGLHTVQGIVEHFLGRF 535

Query: 167 VDENKTQQLKDRGLPIEGSVTVAGRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAP 226
           VDENK +QLK++ +P+EG   VAGRTDKGVTALQQVCSFYTW+KDVK  DI+D I  A P
Sbjct: 536 VDENKAKQLKEKSMPVEGCAVVAGRTDKGVTALQQVCSFYTWRKDVKCEDIKDTINKAVP 595

Query: 227 GKLRVISVSEVSRAFHPNFSAKWRRYLYIFPLTDGGYKDQSSGSGEFF---DTLRNNEIH 283
           GKLR + V+EV R FHPNF+AKWRRY YI PL D      SS   ++    D   +++I+
Sbjct: 596 GKLRALHVAEVGRVFHPNFAAKWRRYFYILPLNDNEESIISSSESDWTRTSDGEEDDQIN 655

Query: 284 DSSSKDDLENET----------------KSYMFSVSKVNRLLQKLEGKLLSYKMFARDTK 327
                D+ E +                 K   FSVSKV++LL++LEGK LSYKMFARDTK
Sbjct: 656 RLPEGDEKEQQQTFSHVNEDDSPDIVGLKRRSFSVSKVDQLLRELEGKTLSYKMFARDTK 715

Query: 328 ASRNEGPPTECFLYHARAIEARLPLADNDEE--TRVMCIELVANRFLRRMVRVLVATSIR 385
           ASR+ GPPTECF++HARA E +LP    D     RVMC+ELVANRFLR+MVRVLVAT+IR
Sbjct: 716 ASRSIGPPTECFMFHARAAETKLPSDTEDYAYLQRVMCVELVANRFLRKMVRVLVATAIR 775

Query: 386 E 386
           E
Sbjct: 776 E 776


>O65241_ARATH (tr|O65241) tRNA pseudouridine synthase OS=Arabidopsis thaliana
           GN=T26D22.10 PE=3 SV=1
          Length = 364

 Score =  304 bits (779), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 182/368 (49%), Positives = 212/368 (57%), Gaps = 84/368 (22%)

Query: 43  YAHYNHTDPCKHARWNARESYEFMYARPWQRVNDFYLNAVLGNLSLPLLFGAEKIHDHNN 102
           Y HY+H D C  ARWNARE++ FMY RPWQ V DFY NAV GNLS+  LF  +K   H++
Sbjct: 6   YVHYHHADACSKARWNARETFRFMYDRPWQHVLDFYSNAVEGNLSVLSLFQPKKSLVHDD 65

Query: 103 EPGIPA---VSDKPEFESVASRGRGGRWARLTFKIVLSYHGGSFDGWQKQPGLNTVQSVI 159
             GI     +  +PE  S    GR GRW R+ FKIVLSY+G SFDGWQKQP L+TVQ V+
Sbjct: 66  --GITEEMLLESEPE-TSTRKDGRSGRWERVNFKIVLSYNGASFDGWQKQPDLHTVQGVV 122

Query: 160 EGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKGVTALQQVCSFYTWKKDVKPRDIED 219
           E  LG FVDE K Q LK +  P+EG V VAGRTDKGV+AL Q                  
Sbjct: 123 EKSLGGFVDERKAQLLKKKCKPLEGRVLVAGRTDKGVSALNQ------------------ 164

Query: 220 AIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYLYIFPLTDGGYKDQSSGSGEFF----- 274
                            VSR+FHPNFSAKWRRYLYIFPL D     +S  + E F     
Sbjct: 165 -----------------VSRSFHPNFSAKWRRYLYIFPLDDAEPLRKSGENHENFIFDEN 207

Query: 275 -----DTLRNNEIHDS---SSKDDLENETKSYM---------FSVSKVNRLLQKLEGKLL 317
                + L + EI +    S  D+LE E  S           FSVSKV++LLQ L+GK+L
Sbjct: 208 KKKQRNGLLSEEIAEEVIMSEDDELEIEETSNALEVVEKPSDFSVSKVDQLLQHLQGKVL 267

Query: 318 SYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVANRFLRRMVR 377
           SYKMFARDTKA+RNEGPPTECF+YHARA E RL  +                     MVR
Sbjct: 268 SYKMFARDTKAARNEGPPTECFMYHARAAEIRLSSS---------------------MVR 306

Query: 378 VLVATSIR 385
           VLVATSIR
Sbjct: 307 VLVATSIR 314


>C5Z7C1_SORBI (tr|C5Z7C1) tRNA pseudouridine synthase OS=Sorghum bicolor
           GN=Sb10g026490 PE=3 SV=1
          Length = 318

 Score =  274 bits (701), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 147/272 (54%), Positives = 179/272 (65%), Gaps = 20/272 (7%)

Query: 117 SVASRGRGGRWARLTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLK 176
           S  +RGRG  W+  TF   +          +  P       ++E  LG FVDE K +QL+
Sbjct: 15  STCTRGRGAGWS--TF---MPSSCAPAPAPRVSPSYLGKMRLVEKHLGQFVDERKAKQLE 69

Query: 177 DRGLPIEGSVTVAGRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSE 236
            R LPIEG   VAGRTDKGVTALQQVCSFYTW+KDVK  DI+DAI  AAP KL+ + VSE
Sbjct: 70  ARSLPIEGCAVVAGRTDKGVTALQQVCSFYTWRKDVKSGDIKDAINEAAPDKLKPLHVSE 129

Query: 237 VSRAFHPNFSAKWRRYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETK 296
           V R FHPNFSAKWRRY+YIFPL +                L   E H S   ++ E+  K
Sbjct: 130 VPREFHPNFSAKWRRYMYIFPLDEDA-------------NLILGEAHSSKILENSEHNIK 176

Query: 297 SYMFSVSKVNRLLQKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADND 356
              F V+KV+++L+ L GK LSYKMFARDT+ASR+ GPPTECF++H+RA  A+L  A+ D
Sbjct: 177 PQSFDVAKVDKILKTLAGKTLSYKMFARDTQASRSVGPPTECFMFHSRAAVAKLHYANED 236

Query: 357 --EETRVMCIELVANRFLRRMVRVLVATSIRE 386
             E   VMC+ELVANRFLR+MVRVLVAT+IRE
Sbjct: 237 YKEGMMVMCVELVANRFLRKMVRVLVATAIRE 268


>D8SHG0_SELML (tr|D8SHG0) tRNA pseudouridine synthase (Fragment) OS=Selaginella
           moellendorffii GN=SELMODRAFT_117099 PE=3 SV=1
          Length = 289

 Score =  263 bits (672), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 142/271 (52%), Positives = 174/271 (64%), Gaps = 39/271 (14%)

Query: 120 SRGRGGRWARLTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRG 179
           S+ RGGRW R TFKIVLSY G +F GWQKQPG  TVQSV+E  LG FVD  +   L+ +G
Sbjct: 2   SKERGGRWERRTFKIVLSYSGTAFAGWQKQPGFLTVQSVLEKQLGRFVDGKRASNLEKQG 61

Query: 180 LPIEGSVTVAGRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSR 239
              E  V+VAGRTDKGV A  QVCSFYTW ++ K  D++ A+  A P  LR +S SEV+R
Sbjct: 62  KIKEALVSVAGRTDKGVHACGQVCSFYTWMRECKEEDVKSAVNSAMPTILRAVSASEVNR 121

Query: 240 AFHPNFSAKWRRYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYM 299
            FHP FSAKWRRY+YIFPL                            S+D+++       
Sbjct: 122 DFHPIFSAKWRRYIYIFPL---------------------------RSRDEID------- 147

Query: 300 FSVSKVNRLLQKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEET 359
             VSKV  LL+ LEG  LSY +FARDTK +R+ GP T C LYHARA  A+LP+ +   E 
Sbjct: 148 --VSKVATLLRGLEGHSLSYAIFARDTKIARSSGPATVCTLYHARAALAKLPVPN---EE 202

Query: 360 RVMCIELVANRFLRRMVRVLVATSIREAAAG 390
            VM +ELVA+RFLR+MVRVLV+T+I+EA AG
Sbjct: 203 NVMVVELVADRFLRKMVRVLVSTAIKEAFAG 233


>D8T5Q5_SELML (tr|D8T5Q5) tRNA pseudouridine synthase (Fragment) OS=Selaginella
           moellendorffii GN=SELMODRAFT_132613 PE=3 SV=1
          Length = 289

 Score =  263 bits (672), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 142/271 (52%), Positives = 173/271 (63%), Gaps = 39/271 (14%)

Query: 120 SRGRGGRWARLTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRG 179
           S+ RGGRW R TFKIVLSY G +F GWQKQPG  TVQSV+E  LG FVD  +   L+ +G
Sbjct: 2   SKERGGRWERRTFKIVLSYSGTAFAGWQKQPGFLTVQSVLEKQLGRFVDGKRASNLEKQG 61

Query: 180 LPIEGSVTVAGRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSR 239
              E  V+VAGRTDKGV A  QVCSFYTW ++ K  D++ A+  A P  LR +S SEV+R
Sbjct: 62  KIKEALVSVAGRTDKGVHACGQVCSFYTWMRECKEEDVKSAVNSAMPTILRAVSASEVNR 121

Query: 240 AFHPNFSAKWRRYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYM 299
            FHP FSAKWRRY+YIFPL                            S+D+++       
Sbjct: 122 DFHPIFSAKWRRYIYIFPL---------------------------RSRDEID------- 147

Query: 300 FSVSKVNRLLQKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEET 359
             VSKV  LL+ LEG  LSY +FARDTK +R+ GP T C LYHARA  A+LP  +   E 
Sbjct: 148 --VSKVATLLRALEGHSLSYAIFARDTKIARSSGPATVCTLYHARAALAKLPFPN---EE 202

Query: 360 RVMCIELVANRFLRRMVRVLVATSIREAAAG 390
            VM +ELVA+RFLR+MVRVLV+T+I+EA AG
Sbjct: 203 NVMVVELVADRFLRKMVRVLVSTAIKEAFAG 233


>M0VMG2_HORVD (tr|M0VMG2) tRNA pseudouridine synthase OS=Hordeum vulgare var.
           distichum PE=3 SV=1
          Length = 199

 Score =  216 bits (551), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 105/171 (61%), Positives = 119/171 (69%), Gaps = 4/171 (2%)

Query: 39  ETENYAHYNHTDPCKHARWNARESYEFMYARPWQRVNDFYLNAV---LGNLSLPLLFGA- 94
           E + YA YNHTD C+H RW ARESYE+MYARPW RV DFY   V    G   L  LF   
Sbjct: 28  ERDGYAQYNHTDACQHLRWTARESYEYMYARPWSRVVDFYAELVRTGAGAAGLAELFRKD 87

Query: 95  EKIHDHNNEPGIPAVSDKPEFESVASRGRGGRWARLTFKIVLSYHGGSFDGWQKQPGLNT 154
           EK H  +     P  S + +    +S+GRGGRW R  FKIVLSYHGGSFDGWQKQP LNT
Sbjct: 88  EKDHTRDTNGEEPLASSEEQMSVKSSKGRGGRWERANFKIVLSYHGGSFDGWQKQPALNT 147

Query: 155 VQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKGVTALQQVCSF 205
           VQ ++E  LG FVDE K +QL++R LP+EG  TVAGRTDKGVTALQQVCSF
Sbjct: 148 VQGLVEKHLGQFVDERKAKQLQERSLPVEGCATVAGRTDKGVTALQQVCSF 198


>K4CCE3_SOLLC (tr|K4CCE3) tRNA pseudouridine synthase OS=Solanum lycopersicum
           GN=Solyc07g017260.2 PE=3 SV=1
          Length = 232

 Score =  211 bits (536), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 107/191 (56%), Positives = 128/191 (67%), Gaps = 6/191 (3%)

Query: 21  PTHSRT-RWLISSSMDNHRETENYAHYNHTDPCKHARWNARESYEFMYARPWQRVNDFYL 79
           PT  RT R L+ +S     + + + HYNHTD CK +RW +RE YEFMYARPW +V DFY 
Sbjct: 5   PTTVRTLRNLMENSSPTATQQKVHFHYNHTDSCKFSRWTSRECYEFMYARPWHKVVDFYA 64

Query: 80  NAVLGNLSLPLLFGAEKIHDHNNEPGIPAVSDKPEFESV----ASRGRGGRWARLTFKIV 135
           + V G++SL  LFG E   DH +   I    +K E  ++     SR + GRWAR  F IV
Sbjct: 65  DMVKGHISLSGLFGKETPADHEDAE-IREDHEKSELVNIPVKDKSRDKSGRWARANFMIV 123

Query: 136 LSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKG 195
           LSYHGGSFDGWQKQP LNTVQ ++E  LG FVDE K Q LKD+ LP+E    VAGRTDKG
Sbjct: 124 LSYHGGSFDGWQKQPDLNTVQGLVERSLGEFVDEKKAQLLKDKNLPLEACALVAGRTDKG 183

Query: 196 VTALQQVCSFY 206
           V+A QQVCSFY
Sbjct: 184 VSASQQVCSFY 194


>M1AKJ9_SOLTU (tr|M1AKJ9) tRNA pseudouridine synthase OS=Solanum tuberosum
           GN=PGSC0003DMG401009562 PE=3 SV=1
          Length = 232

 Score =  204 bits (520), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 105/191 (54%), Positives = 125/191 (65%), Gaps = 6/191 (3%)

Query: 21  PTHSRT-RWLISSSMDNHRETENYAHYNHTDPCKHARWNARESYEFMYARPWQRVNDFYL 79
           PT  RT R L+ +      + + + HYNHTD CK +RW +RE YEFMYAR W +V DFY 
Sbjct: 5   PTTVRTLRNLMENPSQTAAQQKVHFHYNHTDSCKFSRWTSRECYEFMYARLWHKVVDFYA 64

Query: 80  NAVLGNLSLPLLFGAEKIHDHNNEPGIPAVSDKPEFESV----ASRGRGGRWARLTFKIV 135
           + V G+ SL  LFG E   DH +   I    +K E  ++     SR + GRWAR  F IV
Sbjct: 65  DMVKGHTSLSRLFGKETPADHEDAE-IREDHEKSELVNIPVKDKSRDKSGRWARANFMIV 123

Query: 136 LSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKG 195
           LSYHGGSFDGWQKQP LNTVQ ++E  LG FVDE K Q LKD+ LP+E    VAGRTDKG
Sbjct: 124 LSYHGGSFDGWQKQPDLNTVQGLVERSLGEFVDEKKAQLLKDKNLPLEACALVAGRTDKG 183

Query: 196 VTALQQVCSFY 206
           V+A QQVCSFY
Sbjct: 184 VSASQQVCSFY 194


>F2CQJ3_HORVD (tr|F2CQJ3) Predicted protein (Fragment) OS=Hordeum vulgare var.
           distichum PE=2 SV=1
          Length = 221

 Score =  199 bits (507), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 105/188 (55%), Positives = 135/188 (71%), Gaps = 20/188 (10%)

Query: 207 TWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYLYIFPLTDGGYKDQ 266
           TW+KD++P DI+D+I  AAP K++ + VSEVSR FHPNFSAKWRRYLYIFPL +    D 
Sbjct: 4   TWRKDIQPGDIKDSINEAAPDKIKSLVVSEVSREFHPNFSAKWRRYLYIFPLDE----DA 59

Query: 267 SSGSGEFFDT--LRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQKLEGKLLSYKMFAR 324
              SG+   +  L N E   S S            F V+KV++++++LEGK+LSYK+FAR
Sbjct: 60  KPISGDELSSMILENPEYKASRS------------FDVAKVDKIIRQLEGKMLSYKIFAR 107

Query: 325 DTKASRNEGPPTECFLYHARAIEARLPLADND--EETRVMCIELVANRFLRRMVRVLVAT 382
           DT+ASR++GP  ECF++H+RA   +L  AD +  E   VMCIELVANRFLR+MVRVLVAT
Sbjct: 108 DTQASRSDGPAAECFMFHSRAAVTKLYSADENCKEGATVMCIELVANRFLRKMVRVLVAT 167

Query: 383 SIREAAAG 390
           +IREAAAG
Sbjct: 168 TIREAAAG 175


>M0VMG4_HORVD (tr|M0VMG4) Uncharacterized protein OS=Hordeum vulgare var.
           distichum PE=4 SV=1
          Length = 199

 Score =  197 bits (500), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 95/162 (58%), Positives = 110/162 (67%), Gaps = 4/162 (2%)

Query: 39  ETENYAHYNHTDPCKHARWNARESYEFMYARPWQRVNDFYLNAV---LGNLSLPLLFGA- 94
           E + YA YNHTD C+H RW ARESYE+MYARPW RV DFY   V    G   L  LF   
Sbjct: 28  ERDGYAQYNHTDACQHLRWTARESYEYMYARPWSRVVDFYAELVRTGAGAAGLAELFRKD 87

Query: 95  EKIHDHNNEPGIPAVSDKPEFESVASRGRGGRWARLTFKIVLSYHGGSFDGWQKQPGLNT 154
           EK H  +     P  S + +    +S+GRGGRW R  FKIVLSYHGGSFDGWQKQP LNT
Sbjct: 88  EKDHTRDTNGEEPLASSEEQMSVKSSKGRGGRWERANFKIVLSYHGGSFDGWQKQPALNT 147

Query: 155 VQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKGV 196
           VQ ++E  LG FVDE K +QL++R LP+EG  TVAGRTDKG+
Sbjct: 148 VQGLVEKHLGQFVDERKAKQLQERSLPVEGCATVAGRTDKGI 189


>K4CCE2_SOLLC (tr|K4CCE2) Uncharacterized protein OS=Solanum lycopersicum
           GN=Solyc07g017250.2 PE=4 SV=1
          Length = 196

 Score =  167 bits (422), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 94/182 (51%), Positives = 117/182 (64%), Gaps = 20/182 (10%)

Query: 193 DKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRY 252
           DK + +L  +C   TW+KDVK  D++ A+  AAPGK+RV+S+++VSR FHPNFSAKWR Y
Sbjct: 14  DKNIGSL--LC-LDTWRKDVKIEDVKAALDKAAPGKIRVVSLTKVSREFHPNFSAKWRHY 70

Query: 253 LYIFPLTD------GG---------YKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKS 297
           LYIFP+ D      GG            Q+       D    NEI++ +  D L +  K 
Sbjct: 71  LYIFPIDDVLGEKQGGQIWIDDSTNVHQQNECDKSDVDKSNVNEINNEN--DKLVHGNKP 128

Query: 298 YMFSVSKVNRLLQKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDE 357
             F V KVNRLL +LEGKLLSYKMFARDTKASRN GPPTECF++HARAIE  +P A    
Sbjct: 129 TKFEVGKVNRLLGQLEGKLLSYKMFARDTKASRNIGPPTECFVFHARAIETSIPCAKKRR 188

Query: 358 ET 359
           E+
Sbjct: 189 ES 190


>Q0DAC1_ORYSJ (tr|Q0DAC1) Os06g0663100 protein OS=Oryza sativa subsp. japonica
           GN=Os06g0663100 PE=2 SV=2
          Length = 156

 Score =  138 bits (347), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 71/124 (57%), Positives = 82/124 (66%), Gaps = 8/124 (6%)

Query: 39  ETENYAHYNHTDPCKHARWNARESYEFMYARPWQRVNDFYLNAV---LGNLSLPLLFGAE 95
           E + +AHYNHTD C H RW A+ESYE+MYARPW RV DFY   V    G   L  LFG +
Sbjct: 34  EGDEHAHYNHTDACHHLRWTAKESYEYMYARPWSRVVDFYAELVRTGAGAAGLADLFGKD 93

Query: 96  KIH---DHNNEPGIPAVSDKPEFESVASRGRGGRWARLTFKIVLSYHGGSFDGWQKQPGL 152
           +     D N E       ++   +S  S+ RGGRW R+TFKIVLSYHGGSFDGWQKQPGL
Sbjct: 94  ENGYSLDTNGEDYTAPSENQTSTKS--SKDRGGRWERVTFKIVLSYHGGSFDGWQKQPGL 151

Query: 153 NTVQ 156
           NTVQ
Sbjct: 152 NTVQ 155


>B4FE12_MAIZE (tr|B4FE12) Pseudouridylate synthase isoform 1 OS=Zea mays
           GN=ZEAMMB73_642909 PE=2 SV=1
          Length = 173

 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 71/136 (52%), Positives = 90/136 (66%), Gaps = 15/136 (11%)

Query: 253 LYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQKL 312
           +YIFPL +    D   G  +   TL N+E           +  K   F VSKV+ +L+ L
Sbjct: 1   MYIFPLDEDA--DLILGEAQSSKTLENSE-----------HNIKPQSFDVSKVDEILKPL 47

Query: 313 EGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEE--TRVMCIELVANR 370
            GK LSYKMFARDT+ASR+ GPPTECF++H+RA  A+L  A+ D +    VMC+ELVANR
Sbjct: 48  AGKTLSYKMFARDTQASRSVGPPTECFMFHSRAAVAKLHSANEDHKGGMVVMCVELVANR 107

Query: 371 FLRRMVRVLVATSIRE 386
           FLR+MVRVLVAT+IRE
Sbjct: 108 FLRKMVRVLVATAIRE 123


>K7UYR6_MAIZE (tr|K7UYR6) Uncharacterized protein OS=Zea mays GN=ZEAMMB73_642909
           PE=4 SV=1
          Length = 154

 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 68/125 (54%), Positives = 81/125 (64%), Gaps = 10/125 (8%)

Query: 39  ETENYAHYNHTDPCKHARWNARESYEFMYARPWQRVNDFYLNAV---LGNLSLPLLFGAE 95
           E E + HY HTD C   RW A+ESYE+MYARPW RV DFY   V    G   L  LFG +
Sbjct: 32  ELEEHVHYKHTDACHQLRWTAKESYEYMYARPWSRVVDFYAELVRAGAGAAGLAKLFGND 91

Query: 96  K----IHDHNNEPGIPAVSDKPEFESVASRGRGGRWARLTFKIVLSYHGGSFDGWQKQPG 151
           +    ++        P  S+KP   +  S+GRGGRW R+TFK+V+SYHGGSFDGWQKQPG
Sbjct: 92  EKDYTLYTAGENYLTP--SEKPT-TTTFSKGRGGRWERVTFKVVISYHGGSFDGWQKQPG 148

Query: 152 LNTVQ 156
           LNTVQ
Sbjct: 149 LNTVQ 153


>C1FFR9_MICSR (tr|C1FFR9) Predicted protein OS=Micromonas sp. (strain RCC299 /
           NOUM17) GN=MICPUN_60607 PE=4 SV=1
          Length = 523

 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 114/422 (27%), Positives = 158/422 (37%), Gaps = 131/422 (31%)

Query: 57  WNARESYEFMYARPWQRVNDFYLNAVLGNLSLPLLFGAEKIHDHNNEPGIPAVSDKPEFE 116
           W      ++   R W+ V  F    VLG   +  L   E +      PG     D    E
Sbjct: 99  WPPVPCAKYFDDRAWRAVESFAARVVLGEACVSSLAPGE-MEPAGVCPGRGVNQDGTRIE 157

Query: 117 SVASRGRGGRWARLTFKIVLSYHGGSFDGWQKQP-------------------------- 150
           ++  R +G R  R   ++ L+Y+G +F GW   P                          
Sbjct: 158 TLPMRTKGSRGRRTNVRVHLAYYGPAFTGWAWTPENDKDYTDCPRSADATSASASANAED 217

Query: 151 -------------------GLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
                              G  +V + I+  L      +K + +             AGR
Sbjct: 218 DAEDDAVDAARGSSTEWRYGERSVSASIQRALRPLFSSDKERLIHS-----------AGR 266

Query: 192 TDKGVTALQQVCSFYTWKKDV-KPRDIEDAIY----HAAPGKLRVIS-VSEVSRAFHPNF 245
           TDKGV A  Q  S ++  KD   PR++ DA+     HAA G  RV+  V EVS AFH  F
Sbjct: 267 TDKGVHAAAQCFSVWSNAKDTFTPRNVRDALVAHPAHAA-GAWRVVGDVEEVSDAFHATF 325

Query: 246 SAKWRRYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKV 305
            A WRRY+YI P+   G                          D+ EN   +     +  
Sbjct: 326 CATWRRYVYILPMRSLG--------------------------DEEENGLSNVAVDPAAT 359

Query: 306 NRLLQKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEET------ 359
           N +L  LEGK +    FAR T   ++    + CF+  ARA EA +P +   E        
Sbjct: 360 NAMLNALEGKSMDMSAFARATPPGKD----STCFVKVARAFEATVPASKGAERGVGRGAR 415

Query: 360 -------------------------------RVMCIELVANRFLRRMVRVLVATSIREAA 388
                                          RV+ +ELVA+RFLR+MVR LVAT++REAA
Sbjct: 416 RRKSAGFSEDGGLGVGGGGGGDGGPPNSTMERVLVVELVADRFLRKMVRTLVATAVREAA 475

Query: 389 AG 390
            G
Sbjct: 476 TG 477


>C1N1T3_MICPC (tr|C1N1T3) Predicted protein OS=Micromonas pusilla (strain
           CCMP1545) GN=MICPUCDRAFT_51723 PE=4 SV=1
          Length = 554

 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 102/344 (29%), Positives = 140/344 (40%), Gaps = 108/344 (31%)

Query: 123 RGGRWARLTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGP-------------------- 162
           R G+  R T+K  ++Y+G +F GW   P      ++   P                    
Sbjct: 196 RRGKKPRHTYKAAVAYYGPAFAGWAWLPSDGATDALFRAPDDERGGGAGGGGAEWTPGAH 255

Query: 163 --LGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKGVTALQQVCSFYTWKKDVKPRDIEDA 220
             + T           D+  PI+     AGRTDKGV+AL Q  SF+T   D+ P +I  A
Sbjct: 256 SVVATMQRALNPLFAGDKERPIQ----CAGRTDKGVSALAQTVSFWTL-NDLDPAEIVAA 310

Query: 221 IYHAAPG-------------------------------------KLRVISVSE-VSRAFH 242
           +   +P                                       LRV S  E V+  FH
Sbjct: 311 VNEGSPAGRAGALRVPSFQSPPSTPFNSASDAFQLHPDIRSYGTTLRVTSAPEKVTERFH 370

Query: 243 PNFSAKWRRYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSV 302
             F+A WRRY+YI P+      D  +G G+                       +SY    
Sbjct: 371 ATFAATWRRYVYILPINRIDRIDGKTGDGD-----------------------ESYDVDP 407

Query: 303 SKVNRLLQKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLP--LADNDEETR 360
           S V+ +L+KL GK +    FARDT     +G P+ C +  ARA  +R+P  + D DEE R
Sbjct: 408 SAVDAMLRKLSGKTVDATAFARDTP----QGKPSSCRVKVARAFLSRVPSSVGDGDEEIR 463

Query: 361 --------------VMCIELVANRFLRRMVRVLVATSIREAAAG 390
                         V  +ELVA+RFLR+ VRVLVAT+ REA  G
Sbjct: 464 DEDETPTNPSTHQPVCVVELVADRFLRKQVRVLVATAAREANCG 507


>M0VMG6_HORVD (tr|M0VMG6) Uncharacterized protein OS=Hordeum vulgare var.
           distichum PE=4 SV=1
          Length = 152

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 55/88 (62%), Positives = 74/88 (84%), Gaps = 2/88 (2%)

Query: 300 FSVSKVNRLLQKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADND--E 357
           F V+KV++++++LEGK+LSYK+FARDT+ASR++GP  ECF++H+RA   +L  AD +  E
Sbjct: 14  FDVAKVDKIIRQLEGKMLSYKIFARDTQASRSDGPAAECFMFHSRAALTKLYSADENCKE 73

Query: 358 ETRVMCIELVANRFLRRMVRVLVATSIR 385
              VMCIELVANRFLR+MVRVLVAT+IR
Sbjct: 74  GATVMCIELVANRFLRKMVRVLVATTIR 101


>I0YPD2_9CHLO (tr|I0YPD2) tRNA pseudouridine synthase (Fragment) OS=Coccomyxa
           subellipsoidea C-169 GN=COCSUDRAFT_67556 PE=3 SV=1
          Length = 250

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 70/205 (34%), Positives = 97/205 (47%), Gaps = 25/205 (12%)

Query: 69  RPWQRVNDFYLNAVLGNLSLPLLFGAEKIH----DHNNEPGIPAVSDKPEFE-------- 116
           RPWQ +  FY   V GN SL  L   +KI           G+P      + E        
Sbjct: 39  RPWQEIEGFYTRLVAGNASLLDLESLQKIKFTEAAEQTLSGLPGPGGSTQQERQPTSSAD 98

Query: 117 --SVASRGRGGRWARLTFKIVLSYHGGSFDGWQKQPGLN-TVQSVIEGPLGTFVDENKTQ 173
                SR +  +  RLT+ + + + G +F GW   PGL+ T Q  ++  +      +K  
Sbjct: 99  SSYSISRRKETQHTRLTYAVTICFFGPAFAGWAWAPGLSGTAQGTVQDAVAKLFGPDKNT 158

Query: 174 QLKDRGLPIEGSVTVAGRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVIS 233
           Q+          V  AGRTD+GV+A  QV SFY+W+ ++   DI   I  A PGKLR + 
Sbjct: 159 QV---------VVNAAGRTDRGVSAYGQVVSFYSWE-ELALDDIITCINAADPGKLRALH 208

Query: 234 VSEVSRAFHPNFSAKWRRYLYIFPL 258
              V R+FH  F A WRRY+Y+ PL
Sbjct: 209 AQVVPRSFHATFQAVWRRYIYLLPL 233


>B8C9R0_THAPS (tr|B8C9R0) Predicted protein OS=Thalassiosira pseudonana
           GN=THAPSDRAFT_8521 PE=4 SV=1
          Length = 437

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 99/357 (27%), Positives = 148/357 (41%), Gaps = 101/357 (28%)

Query: 91  LFGAEKIHDHNNEPGIPAVSDKPEFESVASRGRGGRWARLTFKIVLSYHGGSFDGWQKQ- 149
           LFG+   H   + P  P  +D   F S        +  R+  K+ ++Y G  F GW+ Q 
Sbjct: 88  LFGSCSKHTSQSTPR-PPTADLDTFSS-------KKKQRINLKLTVAYRGLDFCGWEDQR 139

Query: 150 -------PGLNTVQSVIEGPL-----GTFVD------------------------ENKTQ 173
                        QS +E  +     GT VD                         N   
Sbjct: 140 HELYRSDASGAVKQSAVEEEVLPSVQGTLVDILDPLLGKKATHHNDCKHLEQQAKYNPNF 199

Query: 174 QLKDRGLPIEGSVTVAGRTDKGVTALQQVCSFYTWKKDVKP--------------RDIED 219
           Q K + +PIE  + VAGRTD GV+A+ QVC   T++ D+                +++ +
Sbjct: 200 QKKTKVMPIE--IKVAGRTDTGVSAISQVCRIRTYRTDIGESTNNNTGEGLEKFVQNLVN 257

Query: 220 AIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYLYIFPLTDGGYKDQSSGSGEFFDTLRN 279
                    LR+  V  V   FHP F A  R Y+Y+  + D                   
Sbjct: 258 YEMQQLGEGLRIRDVERVKHDFHPTFDASCRAYIYLIDVND------------------- 298

Query: 280 NEIHDSSSKDDLENETKSYMFSVSKVNRLLQKLEGKLLSYKMFARDTKASRNEGPPTECF 339
                  + D +  +   ++  V K+N +L+ LEGK L Y   +      + +   T C 
Sbjct: 299 ------DASDAITPKITRHI--VPKLNSVLKTLEGKELDYLAMSH----GKVKTQTTLCT 346

Query: 340 LYHARA--IEARLPLADNDEET----RVMCIELVANRFLRRMVRVLVATSIREAAAG 390
           L HARA  +E +    +ND E+    + +CIELV +RFLRRMVR+LVAT++REA+  
Sbjct: 347 LLHARAGIVEWK---CNNDSESPKRKQAICIELVGDRFLRRMVRLLVATALREASGA 400


>K0TH32_THAOC (tr|K0TH32) Uncharacterized protein OS=Thalassiosira oceanica
           GN=THAOC_05423 PE=4 SV=1
          Length = 417

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 86/287 (29%), Positives = 125/287 (43%), Gaps = 69/287 (24%)

Query: 129 RLTFKIVLSYHGGSFDGW--------QKQPG-------------LNTVQSVIEGPLGTFV 167
           R+  KIV+SY GG + GW        QK P                +VQ  +   LG  +
Sbjct: 133 RVNLKIVVSYRGGDYCGWEDQRHELYQKDPTDASMPIHRKVDDRPPSVQGTLADILGPIL 192

Query: 168 DENKTQQLKDRGLPIEGSVTVAGRTDKGVTALQQVCSFYTWKK-DVKPRDIEDAIYHAAP 226
           + +   + +    PI   + VAGRTD GV+A++QVC   TW+  D     + D +   A 
Sbjct: 193 EPDARHETR----PIR--LCVAGRTDLGVSAIRQVCRARTWRNLDDIETYVRDRVNKEAQ 246

Query: 227 GK---LRVISVSEVSRAFHPNFSAKWRRYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIH 283
            +   LR+  V  V  +FHP F A+ R Y Y+           +  SG   D        
Sbjct: 247 ERGLGLRIQDVESVDHSFHPTFDAQSRAYAYLI---------DTCSSGITLDV------- 290

Query: 284 DSSSKDDLENETKSYMFSVSKVNRLLQKLEGKLLSYKMFARDTKASRNEGPPTECFLYHA 343
                             V K+N+LL+ L GK L Y + +     ++     T C ++ A
Sbjct: 291 ------------------VVKLNQLLEPLVGKELDYFVLSYGKVKTQT----TTCTMHRA 328

Query: 344 RAIEARLPLADNDEETRVMCIELVANRFLRRMVRVLVATSIREAAAG 390
           RA         + E    +CIEL+ +RFLRRMVR+LV T++REA  G
Sbjct: 329 RATIVEWKEGPSLERREAICIELLGDRFLRRMVRLLVGTALREAHRG 375


>A4RZ76_OSTLU (tr|A4RZ76) Predicted protein OS=Ostreococcus lucimarinus (strain
           CCE9901) GN=OSTLU_32283 PE=4 SV=1
          Length = 422

 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 111/385 (28%), Positives = 158/385 (41%), Gaps = 107/385 (27%)

Query: 56  RWNARESYEFMYARPWQRVNDFYLNAVLGNLSLPLL--FGAEKIHDHNNEPGIPAVSDKP 113
           RW+  +   F   RPW+ V  F+   V G+  L  L    AE +    ++ G        
Sbjct: 55  RWDPVQQSAFADDRPWRGVERFFRRCVRGDACLRELGLSAAEIVFASGDDAG-------- 106

Query: 114 EFESVASRGRGGRWARLTFKIVLSYHGGSFDG--WQK----------QPGLNTVQSVIEG 161
                AS GR  R  R TF    +YHG SF G  W            +PG  +V + ++ 
Sbjct: 107 -----ASGGRRRREGRRTFAAKCTYHGPSFAGFAWNASRDFAYDGTFEPGCASVSAALQL 161

Query: 162 PLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKGVTALQQVCSFYTWKKDVKPRDIEDAI 221
            L   +D       K R  P       AGRTD+GV+AL    S ++    +   +IE  +
Sbjct: 162 ALRPVLD-------KTRPTP------SAGRTDRGVSALASCVSLWSKSDAISAAEIERLV 208

Query: 222 YH-AAPGK---LRVISVSEVSRAFHPNFSAKWRRYLYIFPLTDGGYKDQSSGSGEFFDTL 277
              +APGK   LRV  V E   AFH  F+AK RRY+Y  P                    
Sbjct: 209 NEDSAPGKAGLLRVSDVRETGSAFHATFAAKSRRYVYCLP-------------------- 248

Query: 278 RNNEIHDS-SSKDDLENETKSYMFSVSKVNRLLQKLEGKLLSYKMFARDTKASRNEGPPT 336
           +N    +S + K DL+      + +      L+++     +    FAR T      G  +
Sbjct: 249 KNQAFRESRTPKADLDARIIDRILAA-----LVRECANAPIDMHAFARGTP----PGKSS 299

Query: 337 ECFLYHARAIEARLPL-----ADNDEETR----------------------------VMC 363
                 ARA EA+LP      AD+D +++                            V+ 
Sbjct: 300 VVTFRVARAFEAKLPSPPGDGADSDNDSKVTAGVRRSKSRNDAHDDTIDITDIDADEVIV 359

Query: 364 IELVANRFLRRMVRVLVATSIREAA 388
           IELVA+RFLR+++R LVAT+IREAA
Sbjct: 360 IELVADRFLRKLIRCLVATTIREAA 384


>E1ZK35_CHLVA (tr|E1ZK35) Putative uncharacterized protein OS=Chlorella
           variabilis GN=CHLNCDRAFT_136316 PE=4 SV=1
          Length = 353

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 79/232 (34%), Positives = 112/232 (48%), Gaps = 51/232 (21%)

Query: 185 SVTVAGRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPN 244
           ++ VAGRTD+GV AL Q              ++  A+    PG LR    ++V R+FH  
Sbjct: 43  ALAVAGRTDRGVHALGQ--------------EVVRALNAERPGLLRAWHAAQVPRSFHAT 88

Query: 245 FSAKWRRYLYIFPLTD---GGYK-----------------DQSSGSGEFFDTLRNNEI-- 282
           F+AKWRRYLY+ PL +   GG +                 D S+ S    +         
Sbjct: 89  FAAKWRRYLYLLPLREPENGGMRAGAGDATAAGSAPACEPDASASSAGSEEEGSGQGGSG 148

Query: 283 -------HDSSSKDDLENETKSYMFSVSKVNRLLQKLEGKLLSYKMFARDTKASRNEGPP 335
                  H+   +D  E +    +  V ++  LL++LE + L Y  FAR T A ++    
Sbjct: 149 GGAGGRRHELCPEDATEVDAAGEV-DVDRLAALLRRLERRRLDYTAFARATPAGKDP--- 204

Query: 336 TECFLYHARAIEARLPLADNDEETRVMCIELVANRFLRRMVRVLVATSIREA 387
             C L  ARA   RLP   + + T V+  EL+ +RFLRRMVRVLVAT++REA
Sbjct: 205 -HCCLLRARAWRGRLP---DPQRTSVLAFELIGDRFLRRMVRVLVATAVREA 252


>L1IR33_GUITH (tr|L1IR33) Uncharacterized protein OS=Guillardia theta CCMP2712
           GN=GUITHDRAFT_115478 PE=4 SV=1
          Length = 321

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 78/263 (29%), Positives = 113/263 (42%), Gaps = 76/263 (28%)

Query: 129 RLTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQ--QLKDRGLPIEGSV 186
           R T+ + +SY G  F   Q+ PG+ TVQ  +E  L +      T+   L  + L    + 
Sbjct: 80  RRTYVMQVSYLGTDFSAVQRCPGVRTVQEEVEKVLESIFTNYSTRPHSLGGQILACMRTH 139

Query: 187 TVAGRTDKGVTAL-QQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNF 245
             AG   +G   + QQ+ SF+ W      + +ED +    P  +RV+      R+FH NF
Sbjct: 140 RFAGEDREGSKVMGQQMFSFHCWDAIKTCQLVED-MNSRLPRDVRVMP-----RSFHANF 193

Query: 246 SAKWRRYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKV 305
           +A WR+Y Y+FPL       Q  G+G F                D+E E         +V
Sbjct: 194 AATWRKYCYVFPL-------QEIGAGRF----------------DVEAE---------EV 221

Query: 306 NRLLQKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIE 365
           + +L+ LEG+   Y  F+                                    +V+ +E
Sbjct: 222 DSMLRGLEGRRRHYNSFS-----------------------------------YKVLVVE 246

Query: 366 LVANRFLRRMVRVLVATSIREAA 388
           L ANRFLRRMVR LVAT+IR AA
Sbjct: 247 LTANRFLRRMVRKLVATAIRAAA 269


>I6X3U9_PROPF (tr|I6X3U9) tRNA pseudouridine synthase A OS=Propionibacterium
           propionicum (strain F0230a) GN=truA PE=3 SV=1
          Length = 270

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 49/123 (39%), Positives = 60/123 (48%), Gaps = 11/123 (8%)

Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
            +I LSY GG+F GW  QPGL TVQ V+E  LG  +  +    L           TVAGR
Sbjct: 4   LRIDLSYDGGAFHGWASQPGLRTVQGVLEDSLGRVLRLDPAPAL-----------TVAGR 52

Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
           TD GV A  QVC        + P D+   +    PG + +  V+E    F   FSA WRR
Sbjct: 53  TDAGVHARGQVCHVDVEDPALSPTDLLRRLRRICPGDIAIRDVTEAPDGFDARFSAVWRR 112

Query: 252 YLY 254
           Y Y
Sbjct: 113 YCY 115


>D1AG36_SEBTE (tr|D1AG36) tRNA pseudouridine synthase A OS=Sebaldella termitidis
           (strain ATCC 33386 / NCTC 11300) GN=truA PE=3 SV=1
          Length = 244

 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 108/256 (42%), Gaps = 56/256 (21%)

Query: 131 TFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAG 190
             KIV  Y G  F G+Q+Q    TVQ  IE  +  + +E             E ++  +G
Sbjct: 3   NIKIVYEYDGSKFSGFQRQLNKKTVQGSIEEVIKNYFNE-------------EVNLLSSG 49

Query: 191 RTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWR 250
           RTDKGV AL QV +F+  +K + P  I+  +  A  GK+RV    E    FH  FSAK R
Sbjct: 50  RTDKGVHALGQVSNFF-MEKSISPDIIKGILNRALSGKIRVTDAKEADSDFHARFSAKTR 108

Query: 251 RYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQ 310
            YLYI  L D     +SS    +   L    I +                   K+ ++++
Sbjct: 109 TYLYIMKLKDEITPFESS----YVSALDGKIIPE-------------------KLQKIME 145

Query: 311 KLEGK--LLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVA 368
              G+    S++   +D K    E     C+                 EE + + IE+  
Sbjct: 146 PFIGRHNFDSFRKKDKDNKNPEREINNIRCY-----------------EEDKRLFIEIEG 188

Query: 369 NRFLRRMVRVLVATSI 384
             FL+ M+R+++ +++
Sbjct: 189 KSFLKTMIRIMIGSAL 204


>E8R650_ISOPI (tr|E8R650) tRNA pseudouridine synthase A OS=Isosphaera pallida
           (strain ATCC 43644 / DSM 9630 / IS1B) GN=truA PE=3 SV=1
          Length = 275

 Score = 80.9 bits (198), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 48/135 (35%), Positives = 69/135 (51%), Gaps = 16/135 (11%)

Query: 131 TFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAG 190
           T K++L+Y G  F GWQ+QPG  TVQ V+E  L     E           P+  +VT +G
Sbjct: 4   TLKLILAYDGTEFSGWQRQPGHRTVQEVVESALRPLTGE-----------PV--AVTASG 50

Query: 191 RTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWR 250
           RTD GV AL QV  F+T  +   P     A+    P  +RV+   E  ++FH    A+ +
Sbjct: 51  RTDAGVHALGQVAHFHTIARH-PPEVFLKALNATLPPDVRVVWAEEAPQSFHATLDAQSK 109

Query: 251 RYLYIFPLTDGGYKD 265
           RY Y+  + +G + D
Sbjct: 110 RYRYV--IDNGPFAD 122


>C7ND49_LEPBD (tr|C7ND49) tRNA pseudouridine synthase A OS=Leptotrichia buccalis
           (strain ATCC 14201 / DSM 1135 / JCM 12969 / NCTC 10249)
           GN=truA PE=3 SV=1
          Length = 251

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 108/252 (42%), Gaps = 48/252 (19%)

Query: 133 KIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRT 192
           KIV  Y G  F G+Q+Q G+ TVQ  IE  +     +N              ++  +GRT
Sbjct: 7   KIVYQYDGSKFCGFQRQMGIKTVQGEIEKVISKTFFQNI-------------NMISSGRT 53

Query: 193 DKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRY 252
           DKGV A++QV +F    +++    I+  +     G+++++ + E+   F+  F A+ R Y
Sbjct: 54  DKGVHAIEQVSNF-MIDQNIPLNAIKRQLNKRLKGEIKILDIEEMDEKFNSRFDAQNRTY 112

Query: 253 LYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQKL 312
           LYI  + D                   N I                M  + K  +++ + 
Sbjct: 113 LYIMKVEDE------------ITPFETNYITGIKE-----------MIDIDKFQKIMLEF 149

Query: 313 EGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVANRFL 372
            GK   +  F +  KA RN  P  E F  +           D + + + + IE+  N FL
Sbjct: 150 IGK-HDFSSFMKKDKAYRN--PVREIFFINC--------YYDKNGKEKQINIEICGNGFL 198

Query: 373 RRMVRVLVATSI 384
           + MVR+++ +++
Sbjct: 199 KTMVRIMIGSAL 210


>K8EEF4_9CHLO (tr|K8EEF4) Uncharacterized protein OS=Bathycoccus prasinos
           GN=Bathy05g03830 PE=4 SV=1
          Length = 508

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 100/408 (24%), Positives = 150/408 (36%), Gaps = 112/408 (27%)

Query: 66  MYARPWQRVNDFYLNAVLGNLSLPLLFGAEKIHDHNNEPGIP---AVSDKPEFESVASRG 122
           M  R W  V  F L  V    +L        +H  + EP +P   +V    E E+  ++ 
Sbjct: 71  MDFRDWLSVERFLLQIVREEKNLS------DVHVADAEPDLPWNFSVQKTLE-EAKDAKQ 123

Query: 123 RGGRW----ARLTFKIVLSYHGGSFD--GWQK------------------QPGLNTVQSV 158
           R  R      R  + + L Y G +F    W K                  QPG  +V + 
Sbjct: 124 RSHRTQTESKRAKYCVRLKYFGNAFASFAWDKNVDDTSKHSSERFYGDNWQPGNASVVAT 183

Query: 159 IEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKGVTALQQVCSFY------------ 206
           I   LG                P+   V  +GRTD+ V+   Q+   +            
Sbjct: 184 IRESLG-----EHCAGFDKEKHPV---VYQSGRTDRNVSGAGQIVQIFRDAKNHLERRYV 235

Query: 207 -----TWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYLYIFPLTDG 261
                  K ++  R I ++      G L+ +    V+  +H  FSA WRRY+YI P    
Sbjct: 236 DETEEERKCELIRRAINESTEVGKRGYLKAVECFRVNAEWHATFSATWRRYVYIIP---- 291

Query: 262 GYKDQSSGSGEFFDTLRNNEIHDSSSKD-DLENETKSYMFSVSKVNRLLQKLEGKLLSYK 320
               ++    E  + LR  E  ++  +D D              ++R+L+K E K L + 
Sbjct: 292 ---KKTLDVDEVKEELRKVEGGETDVEDVDAFAHHSKEEIDCDLLDRMLRKFENKTLDFY 348

Query: 321 MFARDTKASRNEGPPTECFLYHARAIEARLP-------------------------LADN 355
            +ARDT     +G  TEC + +ARA    +P                         L D 
Sbjct: 349 AYARDTP----KGKSTECKMLYARAKTISIPKFQMKAATSKYGKRYRDRRYKDTSLLYDE 404

Query: 356 DEETR----------------VMCIELVANRFLRRMVRVLVATSIREA 387
               R                 + IELVA+RFLR+MVR +V+T+ REA
Sbjct: 405 TAFHRATRTEKEEEEEEEPLECIAIELVADRFLRKMVRCIVSTACREA 452


>Q40J31_EHRCH (tr|Q40J31) tRNA pseudouridine synthase A OS=Ehrlichia chaffeensis
           str. Sapulpa GN=truA PE=3 SV=1
          Length = 245

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/127 (36%), Positives = 66/127 (51%), Gaps = 16/127 (12%)

Query: 130 LTFKIVLSYHGGSFDGWQKQP-GLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTV 188
           + +KI + Y+G +F GWQKQ    N++Q ++E  +  F  ++ T             V V
Sbjct: 1   MRYKITIEYNGSNFIGWQKQKHSSNSIQEILENAILKFSQQHTT-------------VYV 47

Query: 189 AGRTDKGVTALQQVCSFYTWKKDVKPRDIEDAI-YHAAPGKLRVISVSEVSRAFHPNFSA 247
           AGRTD GV AL QV  F     ++    + +AI YH  P  + ++SV +    FH  FSA
Sbjct: 48  AGRTDAGVHALGQVAHF-DLTTNLDTYVVRNAINYHLIPHAIAILSVEKTDDKFHARFSA 106

Query: 248 KWRRYLY 254
           K R YLY
Sbjct: 107 KKRHYLY 113


>D0GPD4_9FUSO (tr|D0GPD4) tRNA pseudouridine synthase A OS=Leptotrichia
           goodfellowii F0264 GN=truA PE=3 SV=1
          Length = 249

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 120/255 (47%), Gaps = 56/255 (21%)

Query: 133 KIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRT 192
           K+V  Y G  F G+Q+Q    TVQ    G +   + +N +Q++         ++  +GRT
Sbjct: 8   KMVYQYDGSKFYGFQRQKNKKTVQ----GEIEKVILKNFSQKI---------NMISSGRT 54

Query: 193 DKGVTALQQVCSFYTWKK---DVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKW 249
           DKGV AL QV +F+  +K   +   R I   +Y    G+++++SV E+ R F+  F AK 
Sbjct: 55  DKGVHALGQVSNFFIDEKIPLEAIKRQINKNLY----GEIKILSVEEIKREFNSRFDAKS 110

Query: 250 RRYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLL 309
           R YLYI                E      +N I  +  K+D+         ++ +  +++
Sbjct: 111 RTYLYIMK------------KEEEITPFESNYI--TGIKNDI---------NIEQFQKIM 147

Query: 310 QKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVAN 369
           +  +GK   +  F +  KA RN    T   +Y+ +         + +E  + + +E+  +
Sbjct: 148 EIFKGK-YDFSSFMKKDKAIRN----TMREIYNIK--------CEYEEREKKIYVEICGS 194

Query: 370 RFLRRMVRVLVATSI 384
            FL+ M+R+++ +++
Sbjct: 195 SFLKTMIRIMIGSAM 209


>R5BED7_9BACT (tr|R5BED7) tRNA pseudouridine synthase A OS=Alistipes sp. CAG:514
           GN=BN689_00664 PE=4 SV=1
          Length = 259

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 102/260 (39%), Gaps = 53/260 (20%)

Query: 130 LTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVA 189
           + ++I+LSY G SF GWQ Q    TVQ  ++  L T + EN              +VT A
Sbjct: 1   MRYRIILSYDGSSFCGWQIQNQAETVQECLQNALSTLLKENI-------------AVTGA 47

Query: 190 GRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKW 249
           GRTD  V A+  V  F T   D+    +   I    P  ++V SV      FH  F A  
Sbjct: 48  GRTDSKVNAINYVAHFETSNPDIDASAVGYKINAILPAGIKVHSVERCEPDFHARFDATQ 107

Query: 250 RRYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLL 309
           R Y Y                  F    R+  + + S          ++   V K+NR  
Sbjct: 108 REYKY------------------FLHRRRDPFMREYSY-------LYTFPLDVGKMNRAA 142

Query: 310 QKLEGK--LLSYKMFARDTKASRNEGPPTECFLYHARAIEARLP-----LADNDEETRVM 362
           Q L GK     ++    D K S        C +  AR  EA  P     +    EE   +
Sbjct: 143 QALLGKHDFSCFEKVGSDNKTSI-------CTVTLAR-WEAYSPDHVRIMGYPAEEGDYL 194

Query: 363 CIELVANRFLRRMVRVLVAT 382
              + A+RFLR MVR +V +
Sbjct: 195 VFTIRADRFLRNMVRAVVGS 214


>G7V946_THELD (tr|G7V946) tRNA pseudouridine synthase A OS=Thermovirga lienii
           (strain ATCC BAA-1197 / DSM 17291 / Cas60314) GN=truA
           PE=3 SV=1
          Length = 250

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 73/251 (29%), Positives = 105/251 (41%), Gaps = 52/251 (20%)

Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
           + + +SY G  F GWQKQP   TVQ V+E  L               G P+  +V  AGR
Sbjct: 4   YAMQVSYKGKDFSGWQKQPNSRTVQGVLESALELLA-----------GHPV--TVYGAGR 50

Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
           TDKGV AL QV SF    +   P  +  A+    P  +RV+ +  V  +FH  +SA WR 
Sbjct: 51  TDKGVHALGQVASFDL-NRHWAPEKLLLAVNAHLPKDVRVMRMRYVDNSFHARYSALWRE 109

Query: 252 YLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQK 311
           Y+Y                  F  T R    H S   D + +  + +   +SK  R  + 
Sbjct: 110 YVY------------------FIWTGRVCFPHFS---DYVWHRKQKW--DISKARRACKL 146

Query: 312 LEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVANRF 371
             G    Y+ F R     ++E PP+     H   + +R  L         +   +  + F
Sbjct: 147 FWGT-KDYRAFCR-----KSECPPSAFRTIHKAEVFSRGDL---------VWFRVRGDSF 191

Query: 372 LRRMVRVLVAT 382
           L  MVR++V T
Sbjct: 192 LTNMVRIMVGT 202


>F9DIR8_9BACT (tr|F9DIR8) tRNA pseudouridine synthase A OS=Prevotella pallens
           ATCC 700821 GN=truA PE=3 SV=1
          Length = 258

 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 100/255 (39%), Gaps = 45/255 (17%)

Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
           + I  SY G ++ GWQ QP   TVQ V+E  L T              L  + SV  AGR
Sbjct: 4   YFIQFSYDGTNYHGWQIQPNGITVQEVLEKALSTL-------------LRTKISVIGAGR 50

Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
           TD GV A   V  F   +  +  + +   +    P  + V +   V+   H  FSA  R 
Sbjct: 51  TDSGVHARTMVAHFDFTENSIDCKQLCYKLNRILPRDVAVTAAYPVNNELHARFSATSRT 110

Query: 252 YLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQK 311
           Y Y        +  Q + S E    L  N++          NE  SY+            
Sbjct: 111 YHYYMHHARNPF--QKAYSCEMPYALNYNQM----------NEAASYLIGER-------- 150

Query: 312 LEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEA--RLPLADNDEETRVMCIELVAN 369
                 ++K F +    +  +   T C L  A+ +     L + DN  ET   C  + AN
Sbjct: 151 ------NFKCFCK----AGGDNKTTICNLTEAQWVRCNTELSIYDNTAETESWCFVITAN 200

Query: 370 RFLRRMVRVLVATSI 384
           RFLR MVR +V T +
Sbjct: 201 RFLRNMVRAVVGTLV 215


>I0TCG1_9BACT (tr|I0TCG1) tRNA pseudouridine synthase A OS=Prevotella sp. oral
           taxon 306 str. F0472 GN=truA PE=3 SV=1
          Length = 253

 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 77/255 (30%), Positives = 103/255 (40%), Gaps = 47/255 (18%)

Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
           + I LSY G ++ GWQ QP   +VQ V+E  L T + E             E S+T AGR
Sbjct: 4   YFITLSYDGTAYHGWQIQPNGISVQEVLERSLSTLLRE-------------EVSITGAGR 50

Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
           TD GV     V  F T  K +  + +   +    P  + V  +  VS   H  FSA  R 
Sbjct: 51  TDAGVHGRMMVAHFDT-DKTIDCQQLVYKLNRLLPRDVSVSQIVPVSEDLHARFSATSRT 109

Query: 252 YLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQK 311
           Y Y    T   +  Q S            EIH              Y     K+N     
Sbjct: 110 YHYYVHTTKQPFSRQYSC-----------EIH--------------YPLDFDKMNEAADY 144

Query: 312 LEGKLLSYKMFARDTKASRNEGPPTECFLYHARAI--EARLPLADNDEETRVMCIELVAN 369
           L G+   +K F +    +  +   T C L  AR I  +A   L  +D+ T   C  + AN
Sbjct: 145 LIGE-KDFKCFCK----TGADVKTTICNLTEARWIPCKAEQALVTSDKVTN-WCFVISAN 198

Query: 370 RFLRRMVRVLVATSI 384
           RFLR MVR +V T +
Sbjct: 199 RFLRNMVRSVVGTLV 213


>A7HCM5_ANADF (tr|A7HCM5) tRNA pseudouridine synthase A OS=Anaeromyxobacter sp.
           (strain Fw109-5) GN=truA PE=3 SV=1
          Length = 265

 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 66/124 (53%), Gaps = 15/124 (12%)

Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
           + + ++Y GG F G+Q+QPGL TVQ  +EG L                  +  ++ VA R
Sbjct: 6   YALRVAYEGGRFRGFQRQPGLPTVQDALEGAL--------------LAAGVRATLAVAAR 51

Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
           TD GV AL QV SF + +  + P  +  A+  A P  + V+ V  V+ +FH   +A+ RR
Sbjct: 52  TDAGVHALDQVVSF-SARAALDPAALRGALNAALPEGVAVLEVLRVAPSFHARNTARARR 110

Query: 252 YLYI 255
           Y+Y+
Sbjct: 111 YVYL 114


>R5G6H8_9FIRM (tr|R5G6H8) tRNA pseudouridine synthase A 1 OS=Coprobacillus sp.
           CAG:698 GN=BN756_01325 PE=4 SV=1
          Length = 262

 Score = 74.3 bits (181), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 72/264 (27%), Positives = 111/264 (42%), Gaps = 55/264 (20%)

Query: 119 ASRGRGGRWARLTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDR 178
           ASR        + +K ++SY G  F G+Q QP L TVQ  IE  L     +  T      
Sbjct: 9   ASRNNCYLGDEMRYKCIVSYDGTCFHGFQVQPNLRTVQEEIEKVLQIICKKKIT------ 62

Query: 179 GLPIEGSVTVAGRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVS 238
                  +  +GRTD GV A+ QV  F T + D+   ++++AI    P  + +  VS+VS
Sbjct: 63  -------IFPSGRTDTGVHAIGQVFHFDT-EIDMGEWNMKNAINSRLPRDIYIKEVSKVS 114

Query: 239 RAFHPNFSAKWRRYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSY 298
             FH  FS+K + Y YI  L +             ++ LR N ++    K+         
Sbjct: 115 LDFHARFSSKRKEYHYIIGLDE-------------YNPLRKNYVYYPPFKN--------- 152

Query: 299 MFSVSKVNRLLQKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEE 358
            F + K+        G+   +K F ++ K                     R   + N E+
Sbjct: 153 -FDIDKMKDASSIFVGE-HDFKSFTKNHKIENT----------------VRTIYSINFEK 194

Query: 359 TR-VMCIELVANRFLRRMVRVLVA 381
           T  ++ I+ + N FL  MVR+LVA
Sbjct: 195 TEDILIIKFIGNGFLHNMVRILVA 218


>F7XVR9_MIDMI (tr|F7XVR9) tRNA pseudouridine synthase A OS=Midichloria
           mitochondrii (strain IricVA) GN=truA PE=3 SV=1
          Length = 246

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/123 (34%), Positives = 62/123 (50%), Gaps = 14/123 (11%)

Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
           +KI + Y G  F GWQ+Q    ++Q  IE  +  F  +             E +V  AGR
Sbjct: 4   YKITVEYDGSKFCGWQRQKNCISIQESIENSIAKFAHK-------------EVTVFGAGR 50

Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
           TD GV A +QV  F   ++D +   I+ AI H     + V+++  VS  FH  FSAK +R
Sbjct: 51  TDAGVHAFEQVAHF-DLEQDYQLHKIKSAINHFVKPDIAVLNIEAVSTDFHARFSAKKKR 109

Query: 252 YLY 254
           Y+Y
Sbjct: 110 YIY 112


>A8SNL4_9FIRM (tr|A8SNL4) tRNA pseudouridine synthase A OS=Parvimonas micra ATCC
           33270 GN=truA PE=3 SV=1
          Length = 247

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/127 (34%), Positives = 66/127 (51%), Gaps = 14/127 (11%)

Query: 134 IVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTD 193
           + +SY G  F G+QKQ  + TVQ  IE  L    +EN              ++  AGRTD
Sbjct: 6   LTISYDGSLFFGFQKQKNVVTVQGEIEDALKKITEENI-------------NIISAGRTD 52

Query: 194 KGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYL 253
           +GV +L+ + +F+T + +V   + + A+ H  P  +RV+   EVS  FH  F AK + Y 
Sbjct: 53  RGVHSLRHIINFHT-ESNVGVLNFKTALNHFLPIGVRVLDSKEVSENFHSRFDAKMKTYK 111

Query: 254 YIFPLTD 260
           YI  L +
Sbjct: 112 YILNLDE 118


>R5IVS9_9FIRM (tr|R5IVS9) tRNA pseudouridine synthase A OS=Firmicutes bacterium
           CAG:822 GN=BN793_00663 PE=4 SV=1
          Length = 247

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 61/129 (47%), Gaps = 12/129 (9%)

Query: 130 LTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVA 189
           + + I  +Y G  + G+QKQP   TVQS +E  L T     K             SV  +
Sbjct: 1   MRYLITFAYDGSKYKGYQKQPKEKTVQSELEKALKTINGHKKV------------SVHAS 48

Query: 190 GRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKW 249
           GRTD GV A  Q   F    K + P  ++D +    PG + + +V  V+  FH  F+AK 
Sbjct: 49  GRTDAGVHAFNQKAHFDLDIKHITPEKLKDGLNSLLPGDIYIKNVEIVADDFHARFNAKA 108

Query: 250 RRYLYIFPL 258
           + Y+YI  +
Sbjct: 109 KEYIYIINM 117


>D5MF74_9BACT (tr|D5MF74) tRNA pseudouridine synthase A OS=Candidatus
           Methylomirabilis oxyfera GN=truA PE=3 SV=1
          Length = 263

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 60/124 (48%), Gaps = 14/124 (11%)

Query: 131 TFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAG 190
           TFK+ + Y G  + GWQ QPG+ T+Q  ++G +   V ++               V  AG
Sbjct: 3   TFKLTIEYDGTDYHGWQVQPGMTTIQGTLQGAVARIVGKDV-------------HVMGAG 49

Query: 191 RTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWR 250
           RTD GV A  QV S  T +    P     A+    P  + V +V E+   FH  +SA+W+
Sbjct: 50  RTDAGVHAHGQVASLRT-EFHHPPDTFRRALTSVLPSDIVVTAVEEMDDDFHAQYSAQWK 108

Query: 251 RYLY 254
           RY Y
Sbjct: 109 RYRY 112


>C0QUR7_PERMH (tr|C0QUR7) tRNA pseudouridine synthase A OS=Persephonella marina
           (strain DSM 14350 / EX-H1) GN=truA PE=3 SV=1
          Length = 244

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/123 (39%), Positives = 64/123 (52%), Gaps = 14/123 (11%)

Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
           +K+V+ Y G ++ GWQKQP   TVQ V+E  L     E+         + + GS    GR
Sbjct: 7   YKLVIMYIGKNYHGWQKQPKHRTVQGVLEEKLKVLFKED---------IVLIGS----GR 53

Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
           TD GV AL QV +F T     KP +I   +    P  + V SV EV  +FH  FSAK + 
Sbjct: 54  TDAGVHALGQVANFKTISYR-KPEEIYRYLNATLPRDISVKSVEEVPLSFHARFSAKGKT 112

Query: 252 YLY 254
           Y+Y
Sbjct: 113 YIY 115


>B5JG47_9BACT (tr|B5JG47) tRNA pseudouridine synthase A OS=Verrucomicrobiae
           bacterium DG1235 GN=truA PE=3 SV=1
          Length = 243

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 67/132 (50%), Gaps = 16/132 (12%)

Query: 130 LTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVA 189
           + +K   SY G ++ GWQKQ G  +VQ VIE  L         +QL    + I GS    
Sbjct: 1   MRWKCSCSYDGTNYAGWQKQSGQISVQQVIEEVL---------EQLLKEKVAIHGS---- 47

Query: 190 GRTDKGVTALQQVCSF-YTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAK 248
           GRTD GV AL+QV  F Y W+       +  A++   P ++RV S +EV   FH  FSA 
Sbjct: 48  GRTDAGVHALEQVFHFDYDWRHG--GESLVKALHSKLPKEIRVESATEVGEEFHARFSAV 105

Query: 249 WRRYLYIFPLTD 260
            +RY Y   L +
Sbjct: 106 SKRYQYRLALGE 117


>B4S8J0_PROA2 (tr|B4S8J0) tRNA pseudouridine synthase A OS=Prosthecochloris
           aestuarii (strain DSM 271 / SK 413) GN=truA PE=3 SV=1
          Length = 237

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 68/253 (26%), Positives = 110/253 (43%), Gaps = 55/253 (21%)

Query: 134 IVLSYHGGSFDGWQKQPG-LNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRT 192
           +++ Y G  F GWQ+Q G ++TVQ  IE  L   + E               S+T AGRT
Sbjct: 1   MIIEYDGTDFAGWQRQDGAVSTVQGEIEAVLRRILQEAV-------------SITGAGRT 47

Query: 193 DKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRY 252
           DKGV A+ Q  SF T    ++   +  ++    P  +R++S+ +V   FH  +SA  R+Y
Sbjct: 48  DKGVHAMGQAASFMT-GSSMEAGRLCHSLNSLLPSSIRIMSLIDVDGDFHARYSALSRQY 106

Query: 253 LYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQKL 312
            Y+    +     + SG             +D +S D            + ++N     L
Sbjct: 107 RYMLRQRESAIFRRFSG-------------YDRASHD------------LDQLNSRASVL 141

Query: 313 EGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVANRFL 372
            G+   +K F++    +R     T C +  A+             E   +  ++ ANRFL
Sbjct: 142 LGR-HDFKAFSKSGSDTRT----TCCTVSEAQWF----------REKEFLVFQISANRFL 186

Query: 373 RRMVRVLVATSIR 385
           R MVR LV+ ++R
Sbjct: 187 RSMVRYLVSATLR 199


>R7JZF3_9CLOT (tr|R7JZF3) tRNA pseudouridine synthase A 1 OS=Clostridium sp.
           CAG:277 GN=BN584_00801 PE=4 SV=1
          Length = 252

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/126 (36%), Positives = 60/126 (47%), Gaps = 14/126 (11%)

Query: 132 FKIVLSYHGGSFDGWQKQPGL-NTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAG 190
           +K++L Y G  + GWQKQ    NT+Q+ +E   G              G P +  V  +G
Sbjct: 4   YKLILQYDGTRYSGWQKQGNTDNTIQAKLETIAGKLT-----------GTPTD--VNGSG 50

Query: 191 RTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWR 250
           RTD GV AL Q  +F   KK      I D   HA P  +RVISV E    FH   +AK +
Sbjct: 51  RTDAGVHALGQTANFRCEKKLADTDYIRDYFNHALPMDIRVISVEEAPTRFHARLNAKEK 110

Query: 251 RYLYIF 256
            Y Y+ 
Sbjct: 111 HYRYVI 116


>D8PHD2_9BACT (tr|D8PHD2) tRNA pseudouridine synthase A OS=Candidatus Nitrospira
           defluvii GN=truA PE=3 SV=1
          Length = 253

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 100/254 (39%), Gaps = 52/254 (20%)

Query: 131 TFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAG 190
           TFK+VL Y G  + GWQ+QP   T+Q+ +E  L        T             +  AG
Sbjct: 3   TFKLVLEYDGTQYAGWQRQPNAPTIQAAVEEALAAIAQTRLT-------------IIGAG 49

Query: 191 RTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWR 250
           RTD GV A  QV SF T  + +  R+   A+    P  +  +SV  V   FH  +SA  +
Sbjct: 50  RTDAGVHAFGQVASFRT-DRGLSQREWLRALNAHLPADISALSVKAVPDHFHARYSANGK 108

Query: 251 RYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQ 310
            Y Y                           + + S +  L  E    ++       + +
Sbjct: 109 LYEY--------------------------HLMNRSERAPLLRERAWMLYKPLDFAAMTE 142

Query: 311 KLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVANR 370
                  S+   + +T  + NE P  +C          RL  AD   +  ++ +   A+R
Sbjct: 143 AAAYLTGSHDFSSFETAPTDNENP--QC----------RLQRADLRRQGDLIILSFYADR 190

Query: 371 FLRRMVRVLVATSI 384
           FL++MVR +V T +
Sbjct: 191 FLKQMVRSMVGTLV 204


>E2SG52_9ACTO (tr|E2SG52) tRNA pseudouridine synthase A OS=Aeromicrobium marinum
           DSM 15272 GN=truA PE=3 SV=1
          Length = 262

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/125 (37%), Positives = 58/125 (46%), Gaps = 14/125 (11%)

Query: 130 LTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVA 189
           +  +I L+Y G  F GW  QPG  TVQ VIE  LGT +  + T  L           T A
Sbjct: 1   MRLRIDLAYDGTDFRGWAVQPGQRTVQGVIESALGTMLRLDPTPTL-----------TCA 49

Query: 190 GRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKW 249
           GRTD GV A  QV        D  P  +E  +    P  +R+ SV E    F   F+A  
Sbjct: 50  GRTDAGVHARGQVAHV---DLDTHPGVLERRLRRYLPDDIRIKSVVEAPPGFDARFAATE 106

Query: 250 RRYLY 254
           RRY+Y
Sbjct: 107 RRYVY 111


>R6HEN3_9FIRM (tr|R6HEN3) tRNA pseudouridine synthase A OS=Phascolarctobacterium
           sp. CAG:266 GN=BN574_00545 PE=4 SV=1
          Length = 252

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/124 (37%), Positives = 63/124 (50%), Gaps = 14/124 (11%)

Query: 131 TFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAG 190
           TFK+ ++Y G  + G+Q+QP   TVQ V+E  L     EN         + + GS    G
Sbjct: 4   TFKLTVAYDGSGYHGFQRQPRDITVQQVLEDALSRITGEN---------VVLAGS----G 50

Query: 191 RTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWR 250
           RTD GV A  QV SF T    +   +++ A+    P  + VI+  E    FH  FSAKW+
Sbjct: 51  RTDSGVHARGQVVSFTT-GCGIPAANLKRAMNSILPPDITVIASQEAEEGFHARFSAKWK 109

Query: 251 RYLY 254
           RY Y
Sbjct: 110 RYCY 113


>F5TCB7_9FIRM (tr|F5TCB7) tRNA pseudouridine synthase OS=Parvimonas sp. oral
           taxon 110 str. F0139 GN=truA PE=3 SV=1
          Length = 184

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/127 (34%), Positives = 65/127 (51%), Gaps = 14/127 (11%)

Query: 134 IVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTD 193
           + +SY G  F G+QKQ  + TVQ  IE  L     EN              ++  AGRTD
Sbjct: 6   LTISYDGSLFFGFQKQENVVTVQGEIENALKKITGENI-------------NIISAGRTD 52

Query: 194 KGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYL 253
           +GV +L+ + +F+T + +V   + + A+ H  P  +RV+   EVS  FH  F AK + Y 
Sbjct: 53  RGVHSLRHIINFHT-ESNVGILNFKTALNHFLPIGVRVLDSKEVSENFHSRFDAKMKTYK 111

Query: 254 YIFPLTD 260
           YI  L +
Sbjct: 112 YILNLDE 118


>D5SSD7_PLAL2 (tr|D5SSD7) tRNA pseudouridine synthase A OS=Planctomyces
           limnophilus (strain ATCC 43296 / DSM 3776 / IFAM 1008 /
           290) GN=truA PE=3 SV=1
          Length = 305

 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 63/258 (24%), Positives = 104/258 (40%), Gaps = 39/258 (15%)

Query: 131 TFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAG 190
           T K+ ++Y G ++ GWQ QP   ++QS +   +  F  E                +  AG
Sbjct: 7   TLKLTIAYDGTAYCGWQTQPNGVSIQSTLMQAIQEFTAETPV-------------LYAAG 53

Query: 191 RTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWR 250
           RTD GV A+ QV SF T    V   +   A+    P  + +  V +V   FH  F A+ +
Sbjct: 54  RTDAGVHAVGQVVSFST-TSPVPAANFRPALQRFLPDDIVIRQVEDVQPGFHAQFHARLK 112

Query: 251 RYLYIF---PLTDGGYKDQSSGSGEFFD-TLRNNEIHDSSSKDDLENETKSYMFSVSKVN 306
            Y Y+F   P+    Y+  +       D    +  I       D  +    +    + V 
Sbjct: 113 TYRYLFHNAPVWSPFYRQYALWHRTRLDEQAMDFAIRQIVGTFDFRSLETQWPNRKTSVR 172

Query: 307 RLLQKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIEL 366
            +++    ++ ++ +   +       GPP+E         E +L     D E   +C+E+
Sbjct: 173 TVIKASVQRIRNWNLLGEN-------GPPSE---------ECQL-----DPEGEFLCMEI 211

Query: 367 VANRFLRRMVRVLVATSI 384
            AN FL  MVR +  T I
Sbjct: 212 TANGFLYNMVRTIAGTLI 229


>C9MQV8_9BACT (tr|C9MQV8) tRNA pseudouridine synthase A OS=Prevotella veroralis
           F0319 GN=truA PE=3 SV=1
          Length = 253

 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 76/255 (29%), Positives = 101/255 (39%), Gaps = 47/255 (18%)

Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
           + I LSY G ++ GWQ QP   +VQ V+E  L T + E             E S+T  GR
Sbjct: 4   YFITLSYDGTAYHGWQIQPNGISVQEVLERSLSTLLRE-------------EVSITGGGR 50

Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
           TD GV     V  F T  K +  + +   +    P  + V  +  VS   H  FSA  R 
Sbjct: 51  TDAGVHGRMMVAHFDT-DKTIACQQLVYKLNRLLPRDVSVSQIVPVSEDLHARFSATSRT 109

Query: 252 YLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQK 311
           Y Y    T   +  Q S            EIH              Y     K+N     
Sbjct: 110 YHYYVHTTKQPFSRQYSC-----------EIH--------------YPLDFDKMNEAADY 144

Query: 312 LEGKLLSYKMFARDTKASRNEGPPTECFLYHARAI--EARLPLADNDEETRVMCIELVAN 369
           L G+   +K F +    +  +   T C L  AR I  +A   L  +D  T   C  + AN
Sbjct: 145 LIGE-KDFKCFCK----TGADVKTTICNLTEARWIPCKAEQALVTSDRITN-WCFVISAN 198

Query: 370 RFLRRMVRVLVATSI 384
           RFLR MVR +V T +
Sbjct: 199 RFLRNMVRSVVGTLV 213


>R7LMS2_9CLOT (tr|R7LMS2) tRNA pseudouridine synthase A OS=Clostridium sp.
           CAG:389 GN=BN638_01098 PE=4 SV=1
          Length = 246

 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 100/254 (39%), Gaps = 53/254 (20%)

Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
            K+ + Y G  F+GWQKQP    +Q  IE  +     E             E  +  +GR
Sbjct: 4   IKLTIEYDGKDFNGWQKQPNKLNIQGTIEQAIKIVTGE-------------EVDLMASGR 50

Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
           TD GV A  QV +F T   ++    I  A+       +R+IS  EV   FH   + K + 
Sbjct: 51  TDAGVHAFGQVANFKT-NSNIPVEKIPIALNSNLKKSIRIISAEEVDERFHSRLTCKKKT 109

Query: 252 YLYIFPLTDGGYKDQSSGSGEFFDTL-RNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQ 310
           Y Y+              + EF   + RN E H     D            ++K+   ++
Sbjct: 110 YRYVI------------NNSEFSSAIYRNLETHIPQKLD------------INKMKEAVK 145

Query: 311 KLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVANR 370
             EG+   +K F    KAS      +   +Y AR  E  +P          + IEL  N 
Sbjct: 146 YFEGE-HDFKAF----KASGTSSKSSVRTIYKARVYE--MP-------NNRIYIELTGNG 191

Query: 371 FLRRMVRVLVATSI 384
           FL  MVR++  T +
Sbjct: 192 FLYNMVRIIAGTLV 205


>R7AYD0_9FIRM (tr|R7AYD0) tRNA pseudouridine synthase A OS=Firmicutes bacterium
           CAG:308 GN=BN599_00700 PE=4 SV=1
          Length = 243

 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/126 (35%), Positives = 64/126 (50%), Gaps = 14/126 (11%)

Query: 130 LTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVA 189
           + +K++L+Y G ++ GWQKQ     +Q VIE  L T   +             E  +T +
Sbjct: 1   MIYKVILAYDGSNYAGWQKQENALGIQEVIEKALTTIHKK-------------ETFITAS 47

Query: 190 GRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKW 249
           GRTD  V AL QV  F   KK + P   + A+    P  +R++ VS  +  FH  FSAK 
Sbjct: 48  GRTDAKVHALGQVFHFEADKK-IGPDRYKMALNALLPEDIRILKVSMEADDFHARFSAKS 106

Query: 250 RRYLYI 255
           +RY YI
Sbjct: 107 KRYDYI 112


>A3IQ30_9CHRO (tr|A3IQ30) tRNA pseudouridine synthase A OS=Cyanothece sp. CCY0110
           GN=truA PE=3 SV=1
          Length = 285

 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 59/123 (47%), Gaps = 14/123 (11%)

Query: 134 IVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTD 193
           +V+ Y G  F GWQ+QP   TVQ VIE  +   +  +          PI G    AGRTD
Sbjct: 15  LVIQYQGSRFHGWQRQPNQRTVQEVIESSIAEVLGYHT---------PIHG----AGRTD 61

Query: 194 KGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYL 253
            GV A  QV  F  +   + P+   + +    P  + +   +EVS  +H  FSA WRRY 
Sbjct: 62  AGVHAAAQVAHF-DYISPIPPQRWVEILNQRLPDDILIRGCAEVSLTWHARFSALWRRYR 120

Query: 254 YIF 256
           Y F
Sbjct: 121 YSF 123


>R6H4K3_9CLOT (tr|R6H4K3) tRNA pseudouridine synthase A 2 OS=Clostridium sp.
           CAG:575 GN=BN717_00492 PE=4 SV=1
          Length = 247

 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 69/253 (27%), Positives = 103/253 (40%), Gaps = 51/253 (20%)

Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
            K+ + Y G  F+GWQKQP    +Q  IE  + T   E+   Q              +GR
Sbjct: 4   IKLTIEYDGKEFNGWQKQPNKLNIQGTIEQAIKTITGEDVDLQ-------------ASGR 50

Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
           TD GV AL QV +F T   ++    +  AI       +R++   EV   FH   S K + 
Sbjct: 51  TDAGVHALGQVANFKT-NSNIPIEKMSIAINCNLKKSIRIVKAEEVEERFHSRLSCKRKT 109

Query: 252 YLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQK 311
           Y YI                     + N+EI  S+   +LE     Y   + K+ + ++ 
Sbjct: 110 YRYI---------------------INNSEI-PSAIYRNLETHI-PYKLDIEKMKQAVKY 146

Query: 312 LEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVANRF 371
            EG+   +K F    KAS      +   +Y A      L + +N      + IEL  N F
Sbjct: 147 FEGE-HDFKAF----KASGTSSKSSIRTIYKAEV----LKMPNNR-----IYIELTGNGF 192

Query: 372 LRRMVRVLVATSI 384
           L  MVR++  T +
Sbjct: 193 LYNMVRIIAGTLV 205


>C9N0X3_9FUSO (tr|C9N0X3) tRNA pseudouridine synthase A OS=Leptotrichia hofstadii
           F0254 GN=truA PE=3 SV=1
          Length = 250

 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 63/259 (24%), Positives = 110/259 (42%), Gaps = 50/259 (19%)

Query: 127 WARLTFKIVLSYHGGSFDGWQKQPGLNTVQSVIE-GPLGTFVDENKTQQLKDRGLPIEGS 185
             +   K++  Y G  F G+Q+Q  + TVQ  IE     TF      Q++         +
Sbjct: 1   MGKRNLKMIYQYDGSKFCGFQRQKKMKTVQGEIERAVFKTF-----NQEI---------N 46

Query: 186 VTVAGRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNF 245
           +  +GRTDKGV A++QV +F    +++    I+  I     G+++V+ V E  + F+  F
Sbjct: 47  MISSGRTDKGVHAMEQVSNF-VIDENIPIEAIKRQINKCLKGEVKVLEVEEAGKDFNARF 105

Query: 246 SAKWRRYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKV 305
            AK R YLYI    +    D +     +   LR +                    SV K 
Sbjct: 106 DAKSRTYLYIMRNEE----DITPFEANYVTGLRAS-------------------VSVEKF 142

Query: 306 NRLLQKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIE 365
             ++    GK   +  F +  KA RN   P    +Y     + ++         + + +E
Sbjct: 143 QEIMNDFVGK-YDFSSFMKKDKAYRN---PVREIVYIKCYYDEKIG-------QKQLNVE 191

Query: 366 LVANRFLRRMVRVLVATSI 384
           +  N FL+ MVR+++ +++
Sbjct: 192 ICGNGFLKTMVRIMIGSAL 210


>D4JDM8_9FIRM (tr|D4JDM8) tRNA pseudouridine synthase A OS=[Eubacterium]
           cylindroides T2-87 GN=truA PE=3 SV=1
          Length = 243

 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 45/126 (35%), Positives = 64/126 (50%), Gaps = 14/126 (11%)

Query: 130 LTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVA 189
           + +K++L+Y G ++ GWQKQ     +Q VIE  L T   +             E  +T +
Sbjct: 1   MIYKVILAYDGSNYAGWQKQENALGIQEVIEKALTTIHKK-------------EIFITAS 47

Query: 190 GRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKW 249
           GRTD  V AL QV  F   KK + P   + A+    P  +R++ VS  +  FH  FSAK 
Sbjct: 48  GRTDAKVHALGQVFHFEADKK-IGPDRYKMALNALLPEDIRILKVSMEADDFHARFSAKS 106

Query: 250 RRYLYI 255
           +RY YI
Sbjct: 107 KRYDYI 112


>A4U350_9PROT (tr|A4U350) tRNA pseudouridine synthase A OS=Magnetospirillum
           gryphiswaldense GN=truA PE=3 SV=1
          Length = 245

 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 46/124 (37%), Positives = 61/124 (49%), Gaps = 15/124 (12%)

Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
           FK+++ YHG  F GWQ+Q    +VQ  +E  +  F               +E +VT AGR
Sbjct: 4   FKLLIEYHGTPFVGWQRQDNGISVQGEVEAAIFRFCG-------------LETTVTAAGR 50

Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAI-YHAAPGKLRVISVSEVSRAFHPNFSAKWR 250
           TD GV A  QV  F    +DV    ++ A+ YH  P  + V +V  V   FH  FSA  R
Sbjct: 51  TDAGVHATGQVIHF-DLDRDVSAERVQGALNYHLKPHPIAVRAVEIVPDDFHARFSALGR 109

Query: 251 RYLY 254
            YLY
Sbjct: 110 SYLY 113


>M4RDW6_9BIFI (tr|M4RDW6) tRNA pseudouridine synthase A OS=Bifidobacterium
           thermophilum RBL67 GN=D805_1423 PE=4 SV=1
          Length = 299

 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 63/140 (45%), Gaps = 29/140 (20%)

Query: 130 LTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVA 189
           +  +I LSY GG + GW +QP L TVQ  +E  L T +     ++++         VTVA
Sbjct: 1   MRLRIDLSYDGGGYHGWARQPDLRTVQGELEHALATILRLADEREVR---------VTVA 51

Query: 190 GRTDKGVTALQQVCSFYTWKKDVKPRDIEDAI---------------YHAAPGKLRVISV 234
           GRTD GV AL QVC       D+ P  ++  I                H  P  + + S+
Sbjct: 52  GRTDTGVHALGQVCHV-----DISPEVLDSCIGHMQANGVEALERRLKHVLPDDIVIRSI 106

Query: 235 SEVSRAFHPNFSAKWRRYLY 254
           S     F   FSA  R Y+Y
Sbjct: 107 SRAPDGFDARFSALERTYVY 126


>D1C2N5_SPHTD (tr|D1C2N5) tRNA pseudouridine synthase A OS=Sphaerobacter
           thermophilus (strain DSM 20745 / S 6022) GN=truA PE=3
           SV=1
          Length = 271

 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 46/126 (36%), Positives = 63/126 (50%), Gaps = 16/126 (12%)

Query: 131 TFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAG 190
           TF++ L Y G +F G Q+QPG+ TVQ  +         E+  ++L   G P    V +AG
Sbjct: 9   TFRVDLGYDGSAFFGSQRQPGVRTVQGAL---------ESAAERLA--GEPTR--VALAG 55

Query: 191 RTDKGVTALQQVCSFYT-WKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKW 249
           RTD+GV A+ QV S    W +     ++  A+    P  L V    EV   FH  FSA+W
Sbjct: 56  RTDRGVHAVGQVASLRIRWARSAD--ELARALMALTPDDLVVYGAREVDERFHARFSARW 113

Query: 250 RRYLYI 255
           R Y Y 
Sbjct: 114 REYRYF 119


>R7JJD5_9BACT (tr|R7JJD5) tRNA pseudouridine synthase A OS=Alistipes putredinis
           CAG:67 GN=BN752_00357 PE=4 SV=1
          Length = 265

 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 44/125 (35%), Positives = 61/125 (48%), Gaps = 13/125 (10%)

Query: 130 LTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVA 189
           + + I L Y+GG++ GWQ+QP + +VQ  IEG + T + E           PI   +T A
Sbjct: 1   MRYFIELRYNGGAYCGWQRQPDMPSVQQTIEGAISTLLRE-----------PI--LLTGA 47

Query: 190 GRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKW 249
           GRTD GV A   V  F T      P  +   + H  PG + V  +  V+   H  FSA+ 
Sbjct: 48  GRTDTGVNASYYVAHFDTSSPVADPEQVVFKLNHMLPGDIAVSRIVPVAADAHARFSARE 107

Query: 250 RRYLY 254
           R Y Y
Sbjct: 108 REYRY 112


>I7JAI4_9RICK (tr|I7JAI4) tRNA pseudouridine synthase A OS=Wolbachia endosymbiont
           of Onchocerca ochengi GN=truA PE=3 SV=1
          Length = 245

 Score = 70.9 bits (172), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 63/127 (49%), Gaps = 16/127 (12%)

Query: 130 LTFKIVLSYHGGSFDGWQKQP-GLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTV 188
           + +KI   Y+G SF GWQKQ    N++Q  IE  +  F  E  T             +  
Sbjct: 1   MRYKITTEYNGSSFSGWQKQQHSSNSIQETIENAIFNFSGEKIT-------------LHC 47

Query: 189 AGRTDKGVTALQQVCSFYTWKKDVKPRDIEDAI-YHAAPGKLRVISVSEVSRAFHPNFSA 247
            GRTD GV AL+QV  F   +++ K   I  AI YH     + V++V  V+ AFH  FSA
Sbjct: 48  GGRTDAGVHALEQVAHF-DMEREFKLHRIRTAINYHLKSVPVVVLNVETVNDAFHSRFSA 106

Query: 248 KWRRYLY 254
           K R Y Y
Sbjct: 107 KKRHYEY 113


>G2SIB1_RHOMR (tr|G2SIB1) tRNA pseudouridine synthase A OS=Rhodothermus marinus
           SG0.5JP17-172 GN=truA PE=3 SV=1
          Length = 252

 Score = 70.9 bits (172), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 103/257 (40%), Gaps = 58/257 (22%)

Query: 131 TFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAG 190
           T+++++ Y G  F GWQ Q    ++Q+ +E  L   + E          + I GS    G
Sbjct: 3   TYRLLIEYDGTDFSGWQIQRNGPSIQAALEEALAVVLRER---------VRIVGS----G 49

Query: 191 RTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWR 250
           RTD GV A  QV  F T  + V P  ++ ++    P  + +  V+     FH  + A+WR
Sbjct: 50  RTDAGVHARGQVAHFCT-NRPVDPERLQGSLNGLLPPSIAIREVAPAPDNFHARYDARWR 108

Query: 251 RYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSV---SKVNR 307
           RY Y                            + ++    LE   + Y+      +++NR
Sbjct: 109 RYHY----------------------------YVATVPCALERHLRWYLRPAPDFARMNR 140

Query: 308 LLQKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELV 367
               L G    +  F R   A+RN      C +Y AR +         D        E+V
Sbjct: 141 AACDLLGT-HDFTTFCRTQAATRNR----TCTVYLARWVP--------DPRPGDWHFEIV 187

Query: 368 ANRFLRRMVRVLVATSI 384
           A+RFL  MVR +V T I
Sbjct: 188 ADRFLHGMVRAIVGTLI 204


>G9PW72_9BACT (tr|G9PW72) tRNA pseudouridine synthase A OS=Synergistes sp.
           3_1_syn1 GN=truA PE=3 SV=1
          Length = 252

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/121 (37%), Positives = 61/121 (50%), Gaps = 14/121 (11%)

Query: 136 LSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKG 195
           +SY GG F GWQ QPGL+TVQ  +         E    ++  R  P+ G    AGRTD G
Sbjct: 8   VSYDGGKFFGWQIQPGLSTVQRSL---------EEAVSKINGRHTPVAG----AGRTDAG 54

Query: 196 VTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYLYI 255
           V A  QVCSF   ++  +PR +  A+    P  + ++  + V   FH  FSA+ R Y Y 
Sbjct: 55  VHARAQVCSF-DMERPWEPRRLLLAVNAHLPEGVSLMRAAAVPGDFHARFSAREREYRYF 113

Query: 256 F 256
            
Sbjct: 114 I 114


>C9R8G0_AMMDK (tr|C9R8G0) tRNA pseudouridine synthase A OS=Ammonifex degensii
           (strain DSM 10501 / KC4) GN=truA PE=3 SV=1
          Length = 259

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/121 (38%), Positives = 61/121 (50%), Gaps = 14/121 (11%)

Query: 136 LSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKG 195
           ++Y G +F G+Q+QPGL TVQ V+E  L     E  T Q+K            AGRTD G
Sbjct: 10  VAYDGTAFSGFQRQPGLRTVQGVLEEALARLTKE--TCQVKG-----------AGRTDAG 56

Query: 196 VTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYLYI 255
           V A  QV SF T      PR +  A+    P  + V++ +EV   FHP + A  + Y Y 
Sbjct: 57  VHAEGQVVSFRTASSIPTPRLV-PALNGLLPPDVAVLAAAEVPEQFHPRYDAVSKVYRYT 115

Query: 256 F 256
           F
Sbjct: 116 F 116


>F2JSF8_CELLD (tr|F2JSF8) tRNA pseudouridine synthase A OS=Cellulosilyticum
           lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB 11756
           / RHM5) GN=truA PE=3 SV=1
          Length = 245

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 63/124 (50%), Gaps = 16/124 (12%)

Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
           FK++++Y G +++G+ KQP   T+Q  ++  +   V      +++  G         AGR
Sbjct: 4   FKLIVAYDGTNYNGFAKQPNATTIQGTLDVAIAKIVQ----HEVRTLG---------AGR 50

Query: 192 TDKGVTALQQVCSFYTWKKDVKPRD-IEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWR 250
           TD+GV A  Q C F +  K   P D +  AI    P  + V SV EVS  FHP F AK +
Sbjct: 51  TDRGVHAFAQCCVFDSDTK--IPADRLAKAINSQLPADISVKSVEEVSEDFHPRFGAKRK 108

Query: 251 RYLY 254
            Y Y
Sbjct: 109 TYRY 112


>B0MSW4_9BACT (tr|B0MSW4) tRNA pseudouridine synthase A OS=Alistipes putredinis
           DSM 17216 GN=truA PE=3 SV=1
          Length = 390

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 100/256 (39%), Gaps = 54/256 (21%)

Query: 130 LTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVA 189
           + + I L Y+GG++ GWQ+QP + +VQ  IEG + T + E           PI   +T A
Sbjct: 126 MRYFIELRYNGGAYCGWQRQPDMPSVQQTIEGAISTLLRE-----------PI--LLTGA 172

Query: 190 GRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKW 249
           GRTD GV A   V  F T      P  +   + H  PG + V  +  V+   H  FSA+ 
Sbjct: 173 GRTDTGVNASYYVAHFDTSSPVADPEQVVFKLNHMLPGDIAVSRIVPVAADAHARFSARE 232

Query: 250 RRY-LYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRL 308
           R Y  YI P                    R N                S+ + V      
Sbjct: 233 REYRYYIEP--------------------RKNPF----------TRAASWQYYVPLDVAA 262

Query: 309 LQKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVA 368
           + +    L+ Y+ F    K + ++     C L  A     R            +C  + A
Sbjct: 263 MNRAADVLMEYEDFTSFAKLN-SDNKTNICHLKRADWTVGR---------DGTLCFTIRA 312

Query: 369 NRFLRRMVRVLVATSI 384
           +RFLR MVR +V T +
Sbjct: 313 DRFLRNMVRAIVGTLV 328


>R6GWK3_9FIRM (tr|R6GWK3) tRNA pseudouridine synthase A OS=Firmicutes bacterium
           CAG:552 GN=BN704_00687 PE=4 SV=1
          Length = 239

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/131 (35%), Positives = 65/131 (49%), Gaps = 15/131 (11%)

Query: 130 LTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVA 189
           + +K+ + Y G  F GWQ QPG +TVQ  IE  L     E+         + I GS    
Sbjct: 1   MRYKVTVEYDGSDFCGWQLQPGKSTVQGAIENALAALTGES---------IRITGS---- 47

Query: 190 GRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKW 249
           GRTD GV A  QV  F +  KD+K +     + +  P  +R+ ++ E  + FH  FSA  
Sbjct: 48  GRTDAGVHAKGQVFHFDS-AKDMKGK-WRSGLNYYLPQSVRITAIEESDQNFHARFSAIN 105

Query: 250 RRYLYIFPLTD 260
           + Y Y+F L D
Sbjct: 106 KTYKYLFLLRD 116


>E3H678_ILYPC (tr|E3H678) tRNA pseudouridine synthase A OS=Ilyobacter polytropus
           (strain DSM 2926 / CuHBu1) GN=truA PE=3 SV=1
          Length = 243

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/126 (37%), Positives = 63/126 (50%), Gaps = 16/126 (12%)

Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
            KI   Y G  F G+Q+QP   TVQ  IE  L   + E             E ++  +GR
Sbjct: 4   IKIEYEYDGSGFFGFQRQPSARTVQGEIESALKVVLKE-------------EINLASSGR 50

Query: 192 TDKGVTALQQVCSFYTWKKDVKPRD-IEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWR 250
           TD+GV A  QV +F+T  K   P D +E A+ +  P  +++ S+  VS  FH  FSAK R
Sbjct: 51  TDRGVHAYMQVSNFFTSSKI--PLDRLEFAVKNLIPEDIKIHSMKNVSEEFHARFSAKSR 108

Query: 251 RYLYIF 256
            Y YI 
Sbjct: 109 AYEYIM 114


>I3DGM8_9FUSO (tr|I3DGM8) tRNA pseudouridine synthase A OS=Fusobacterium
           necrophorum subsp. funduliforme ATCC 51357 GN=truA PE=3
           SV=1
          Length = 242

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 108/256 (42%), Gaps = 60/256 (23%)

Query: 133 KIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRT 192
           KI   Y G SF G+Q+QP   TVQ  IE  L   + E             +  +T +GRT
Sbjct: 5   KISYQYDGSSFMGFQRQPNQRTVQGEIEKSLFHILRE-------------KIDLTSSGRT 51

Query: 193 DKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRY 252
           D+GV A+QQV +F+T   ++    +  A+    P  + ++ V EV   FH  FSAK R Y
Sbjct: 52  DRGVHAIQQVSNFFT-AVNIPSDRLFYALSRNLPEDILLLQVEEVDSEFHARFSAKTRSY 110

Query: 253 LYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYM---FSVSKVNRLL 309
            Y                              +  K+  E+  K+Y+      ++  ++L
Sbjct: 111 RYCI----------------------------TWKKNPFEHRYKAYVKEKIESTEFLKIL 142

Query: 310 QKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVAN 369
           Q   GK  +++ F     A  N  P  E +      +E              M I++VAN
Sbjct: 143 QVFVGK-HNFQNFRLQDSAFAN--PMREIYSISVEEVENG------------MNIDIVAN 187

Query: 370 RFLRRMVRVLVATSIR 385
            FL+  +R+++ T+++
Sbjct: 188 AFLKSQIRIMIGTALQ 203


>B1WQT7_CYAA5 (tr|B1WQT7) tRNA pseudouridine synthase A OS=Cyanothece sp. (strain
           ATCC 51142) GN=truA PE=3 SV=1
          Length = 286

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/123 (37%), Positives = 58/123 (47%), Gaps = 14/123 (11%)

Query: 134 IVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTD 193
           +V+ Y GG F GWQ+QP   TVQ  IE  +          Q+    +PI G    AGRTD
Sbjct: 15  LVIQYQGGRFHGWQRQPTQRTVQEDIETSIA---------QVLGYHVPIHG----AGRTD 61

Query: 194 KGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYL 253
            GV A  QV  F      + P+   D +    P  + V   +EV   +H  FSA WRRY 
Sbjct: 62  AGVHAAAQVAHFDD-VSPIPPQRWADILNQRLPDDILVRGSAEVPLTWHARFSALWRRYR 120

Query: 254 YIF 256
           Y F
Sbjct: 121 YTF 123


>G6GPE9_9CHRO (tr|G6GPE9) tRNA pseudouridine synthase A OS=Cyanothece sp. ATCC
           51472 GN=truA PE=3 SV=1
          Length = 286

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/123 (37%), Positives = 58/123 (47%), Gaps = 14/123 (11%)

Query: 134 IVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTD 193
           +V+ Y GG F GWQ+QP   TVQ  IE  +          Q+    +PI G    AGRTD
Sbjct: 15  LVIQYQGGRFHGWQRQPTQRTVQEDIETSIA---------QVLGYHVPIHG----AGRTD 61

Query: 194 KGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYL 253
            GV A  QV  F      + P+   D +    P  + V   +EV   +H  FSA WRRY 
Sbjct: 62  AGVHAAAQVAHFDD-VSPIPPQRWADILNQRLPDDILVRGSAEVPLTWHARFSALWRRYR 120

Query: 254 YIF 256
           Y F
Sbjct: 121 YTF 123


>E1KTU2_9BACT (tr|E1KTU2) tRNA pseudouridine synthase A OS=Prevotella disiens
           FB035-09AN GN=truA PE=3 SV=1
          Length = 255

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 102/254 (40%), Gaps = 45/254 (17%)

Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
           + I  SY G ++ GWQ QP   +VQ V+E  L T              L  + SVT AGR
Sbjct: 4   YFIKFSYDGTNYHGWQIQPNGISVQEVLEKALSTL-------------LRTKMSVTGAGR 50

Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
           TD GV A   V  F  W+  +  + +   +    P  + VISV  V    H  FSA  R 
Sbjct: 51  TDAGVHARLMVAHF-DWEAPIDGQQLAYKLNRMLPRDVSVISVEAVENELHARFSATSRT 109

Query: 252 YLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQK 311
           Y Y        ++ ++  S  +                   +    Y     ++N   + 
Sbjct: 110 YHYYM------HRGRNPFSRAY-------------------SYEMPYELDFERMNEAAKY 144

Query: 312 LEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADND-EETRVMCIELVANR 370
           L G+   +K F +    +  +   T C L  AR       +A ++ E+    C  + ANR
Sbjct: 145 LIGE-RDFKCFCK----AGGDNKTTICNLTEARWQHCNTEIAIHEAEKAEEWCFVITANR 199

Query: 371 FLRRMVRVLVATSI 384
           FLR MVR +V T +
Sbjct: 200 FLRNMVRAVVGTLV 213


>E7ACU3_HELFC (tr|E7ACU3) tRNA pseudouridine synthase A OS=Helicobacter felis
           (strain ATCC 49179 / NCTC 12436 / CS1) GN=truA PE=3 SV=1
          Length = 246

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/124 (35%), Positives = 62/124 (50%), Gaps = 17/124 (13%)

Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
           F+++L+Y G +F G+ KQP L +V+  +E  L           LK   L I   +  AGR
Sbjct: 4   FQMLLAYDGSAFYGYAKQPNLPSVEGALESAL-----------LK---LGISSPILCAGR 49

Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
           TD+GV AL QV SF T    +  + ++  +    P  +    + EV   FHP F A WR 
Sbjct: 50  TDRGVHALCQVISFST---PLSLQTLQRHLPPKLPAPILCKGIQEVPLDFHPRFDATWRL 106

Query: 252 YLYI 255
           Y YI
Sbjct: 107 YRYI 110


>B3QNY5_CHLP8 (tr|B3QNY5) tRNA pseudouridine synthase A OS=Chlorobaculum parvum
           (strain NCIB 8327) GN=truA PE=3 SV=1
          Length = 238

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 74/250 (29%), Positives = 100/250 (40%), Gaps = 55/250 (22%)

Query: 136 LSYHGGSFDGWQKQPG-LNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDK 194
           + Y G  + GWQ+QPG + TVQ  IE  LG    E           P+  S+  AGRTD+
Sbjct: 3   IEYDGTDYSGWQRQPGDVVTVQGEIERVLGRITQE-----------PV--SIDGAGRTDR 49

Query: 195 GVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYLY 254
           GV A  QV SF    +    R +  A     P  +R+ S+ +V  +FH  FSA  R Y Y
Sbjct: 50  GVHARGQVASFAVASEMPLGRMMHSA-NSLLPSTIRITSMRQVPESFHARFSATSREYRY 108

Query: 255 IFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQKLEG 314
           +          + +G               S  K D           V  +NRL   L G
Sbjct: 109 VLLERPSAIDSRFAGC--------------SHGKPD-----------VVLMNRLAAMLVG 143

Query: 315 KLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVANRFLRR 374
               +  F+++T   +     T C +  AR   +           R     + ANRFLR 
Sbjct: 144 T-HDFAAFSKETPDQQG----TLCTVTEARWYRS----------GRFHVFRIEANRFLRS 188

Query: 375 MVRVLVATSI 384
           MVR LVA  I
Sbjct: 189 MVRFLVAGMI 198


>A6C4N8_9PLAN (tr|A6C4N8) tRNA pseudouridine synthase A OS=Planctomyces maris DSM
           8797 GN=truA PE=3 SV=1
          Length = 267

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/258 (25%), Positives = 107/258 (41%), Gaps = 45/258 (17%)

Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
            K+ L+Y G  + GWQ QP   +VQ+ +E  +     E  TQQ           V VAGR
Sbjct: 4   IKLTLAYDGSEYAGWQVQPNGPSVQACVEKAI-----EQLTQQ--------RSPVLVAGR 50

Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
           TD GV AL QV SF T +  +  ++++  +    P  + V  V EV   FH  +SA  +R
Sbjct: 51  TDAGVHALGQVASFQT-ESAIPCKNLQTGLQRFLPESICVREVREVPPDFHATYSAIQKR 109

Query: 252 YLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSY-------MFSVSK 304
           Y Y+   +   Y        EF   L ++ +H +  +   +++ + +         SV  
Sbjct: 110 YRYVIHNSAVPYPFLKKYVSEFGRPLDSDRMHAAGQQLLGQHDFRCFESHYPNKATSVRT 169

Query: 305 VNRLLQKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCI 364
           +  L  +  G    + +                         +A L + +N      + +
Sbjct: 170 ITELTVQRTGVWPVWGVLE-----------------------QAHLSM-ENSTSAEFITV 205

Query: 365 ELVANRFLRRMVRVLVAT 382
           ++VA+ FL  MVR +V T
Sbjct: 206 DVVADGFLYNMVRAIVGT 223


>F0RSJ5_SPHGB (tr|F0RSJ5) tRNA pseudouridine synthase A OS=Sphaerochaeta globosa
           (strain ATCC BAA-1886 / DSM 22777 / Buddy) GN=truA PE=3
           SV=1
          Length = 281

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 54/125 (43%), Gaps = 13/125 (10%)

Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
            ++ +SYHG  + GWQKQ    +V  +IE  L   +DE             E  V  +GR
Sbjct: 21  IRMTVSYHGSHYSGWQKQSNAKSVAEIIEQTLKQILDE-------------EVQVVGSGR 67

Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
           TD GV AL QVC        +K      A+    P  +R++   E    FH  ++   R 
Sbjct: 68  TDSGVHALAQVCHMDIANTRIKGEKFALALNRLLPADIRILDSCETDGTFHARYTTMART 127

Query: 252 YLYIF 256
           Y Y +
Sbjct: 128 YRYYY 132


>F9PQE1_9FIRM (tr|F9PQE1) tRNA pseudouridine synthase A OS=Parvimonas sp. oral
           taxon 393 str. F0440 GN=truA PE=3 SV=1
          Length = 247

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 63/125 (50%), Gaps = 14/125 (11%)

Query: 134 IVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTD 193
           + +SY G  F G+QKQ  + TVQ  IE  L     EN              ++  AGRTD
Sbjct: 6   LTISYDGSLFFGFQKQDDVITVQGEIESALKKITGENI-------------NIISAGRTD 52

Query: 194 KGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYL 253
           +GV +L+ + +F+T + +V   + + A+ H  P  +RV+   EVS  FH  F A  + Y 
Sbjct: 53  RGVHSLRHIINFHT-ESNVGVLNFKTALNHFLPIGVRVLDSKEVSEDFHSRFDATMKTYK 111

Query: 254 YIFPL 258
           YI  L
Sbjct: 112 YILNL 116


>R5TDT0_9CLOT (tr|R5TDT0) tRNA pseudouridine synthase A OS=Clostridium sp.
           CAG:762 GN=BN775_00635 PE=4 SV=1
          Length = 249

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 104/251 (41%), Gaps = 47/251 (18%)

Query: 134 IVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTD 193
           I+ SY G +F G+QKQ    TVQ  +E  L    D  K +            V  +GRTD
Sbjct: 6   IIFSYDGTNFKGYQKQIKERTVQGELEKALKEINDNKKVE------------VHASGRTD 53

Query: 194 KGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYL 253
            GV A+ Q   F    K +    ++ A+    P  + +  V EV   FH  F+AK + Y+
Sbjct: 54  AGVHAINQKAHFDLATK-ITSDKLKKALNSILPNDIYIKKVEEVDDNFHARFNAKGKEYI 112

Query: 254 YIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQKLE 313
           Y+  +            GE+    RN     +   D +E E            R ++ LE
Sbjct: 113 YLINM------------GEYNPIERNYVYQYNKKLDTVEME------------RAMKYLE 148

Query: 314 GKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVANRFLR 373
           G    ++ F   TK  ++E  P E ++   R I     + D  +  R+  +  V   FLR
Sbjct: 149 G-THDFRAF---TKIDKDE--PKEDYV---RTISQTNLIRDIKDVNRLTLV-FVGTGFLR 198

Query: 374 RMVRVLVATSI 384
            MVR +V T I
Sbjct: 199 YMVRNMVGTLI 209


>I3YRA3_ALIFI (tr|I3YRA3) tRNA pseudouridine synthase A OS=Alistipes finegoldii
           (strain DSM 17242 / JCM 16770 / AHN 2437 / CCUG 46020 /
           CIP 107999) GN=truA PE=3 SV=1
          Length = 254

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 67/255 (26%), Positives = 102/255 (40%), Gaps = 52/255 (20%)

Query: 130 LTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVA 189
           + + + L Y+G ++ GWQ+QP + +VQ  +E  L T + E            IE  VT A
Sbjct: 1   MRYFLELRYNGAAYCGWQRQPDMPSVQQTLERALTTLLREK-----------IE--VTGA 47

Query: 190 GRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKW 249
           GRTD GV A   V  F   +    P  +   +    PG + V S++ V    H  F+A+ 
Sbjct: 48  GRTDTGVNASYYVAHFDCEEPVPDPAQVVYKLNFLLPGDIAVGSMTPVGADAHARFAARE 107

Query: 250 RRYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLL 309
           R Y Y                  + +  +N    D+           ++ + V      +
Sbjct: 108 REYRY------------------YIEPRKNPFTRDA-----------TWQYYVPLDMERM 138

Query: 310 QKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVAN 369
            +    LL Y  F    K + N      C + HA         A   +E  V+C  + A+
Sbjct: 139 NEAAASLLEYDDFTSFAKLNSNN-KTNICRIMHA---------AWTADERGVLCFTIRAD 188

Query: 370 RFLRRMVRVLVATSI 384
           RFLR MVR LV T +
Sbjct: 189 RFLRNMVRSLVGTLV 203


>L8DKP4_9NOCA (tr|L8DKP4) tRNA pseudouridine synthase A OS=Rhodococcus sp.
           AW25M09 GN=truA PE=3 SV=1
          Length = 298

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/144 (36%), Positives = 70/144 (48%), Gaps = 27/144 (18%)

Query: 130 LTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVA 189
           + +++ +SY G  F GW +QPG+ TV  V+E    T + +           PIE  +TVA
Sbjct: 25  VRYRLDISYDGTDFSGWARQPGIRTVCGVLEEAFSTVLRQ-----------PIE--LTVA 71

Query: 190 GRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAA---PGKLRVISVSEVSRAFHPNFS 246
           GRTD GV A  QV  F   +    P D +  +   A   P  +RV ++SEVSR F   FS
Sbjct: 72  GRTDAGVHATGQVAHFDAVE---IPGDHDRLVRRMARFLPTDVRVRTISEVSRDFDARFS 128

Query: 247 AKWRRYLYIF--------PLTDGG 262
           A  R Y Y F        PL  GG
Sbjct: 129 AYRRHYEYRFSTARYGVDPLDVGG 152


>I4EJ07_9CHLR (tr|I4EJ07) tRNA pseudouridine synthase A OS=Nitrolancetus
           hollandicus Lb GN=truA PE=3 SV=1
          Length = 289

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/124 (37%), Positives = 64/124 (51%), Gaps = 16/124 (12%)

Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
           F+I L Y G  F G Q+QPG  TVQ+V+E  L         +QL   G PI   + +AGR
Sbjct: 6   FRIDLGYDGTDFAGSQRQPGQRTVQAVVEQAL---------EQLS--GQPIR--IALAGR 52

Query: 192 TDKGVTALQQVCS-FYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWR 250
           TD+GV A+ QV S +  W++     D+  A+    P  + +     V  AFH  FSA +R
Sbjct: 53  TDRGVHAVGQVASGWINWERSAD--DLARALQAVTPEDVAIYGARAVDAAFHARFSACYR 110

Query: 251 RYLY 254
            Y Y
Sbjct: 111 EYRY 114


>E4MD25_9BACT (tr|E4MD25) tRNA pseudouridine synthase A OS=Alistipes sp. HGB5
           GN=truA PE=3 SV=1
          Length = 257

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 72/256 (28%), Positives = 101/256 (39%), Gaps = 54/256 (21%)

Query: 130 LTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVA 189
           + + + L Y+G ++ GWQ+QP + +VQ  +E  L T + E            IE  VT A
Sbjct: 4   MRYFLELRYNGAAYCGWQRQPDMPSVQQTLERALTTLLREK-----------IE--VTGA 50

Query: 190 GRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKW 249
           GRTD GV A   V  F   +    P  +   +    PG + V S++ V    H  F+A+ 
Sbjct: 51  GRTDTGVNASYYVAHFDCEEPVPDPAQVVYKLNFLLPGDIAVGSMTPVGADAHARFAARE 110

Query: 250 RRY-LYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRL 308
           R Y  YI P  +   +D +       D  R NE   S                       
Sbjct: 111 REYRYYIEPRKNPFTRDATWQYYVPLDMERMNEAAAS----------------------- 147

Query: 309 LQKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVA 368
                  LL Y  F    K + N      C + HA         A   +E  V+C  + A
Sbjct: 148 -------LLEYDDFTSFAKLNSNN-KTNICRIMHA---------AWTADERGVLCFTIRA 190

Query: 369 NRFLRRMVRVLVATSI 384
           +RFLR MVR LV T +
Sbjct: 191 DRFLRNMVRSLVGTLV 206


>B6B8U3_9RHOB (tr|B6B8U3) tRNA pseudouridine synthase A OS=Rhodobacterales
           bacterium Y4I GN=truA PE=3 SV=1
          Length = 255

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/124 (35%), Positives = 61/124 (49%), Gaps = 15/124 (12%)

Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
           F + + YHG  F GWQ+Q  L +VQ  IE  L              R  P E ++  AGR
Sbjct: 4   FALKVEYHGKPFAGWQRQKDLPSVQGAIEAALA-------------RLEPGEHTIAAAGR 50

Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAI-YHAAPGKLRVISVSEVSRAFHPNFSAKWR 250
           TD GV AL QV +     KD  P  + +A+ YH  P  + ++  + V   +H  FSA  R
Sbjct: 51  TDTGVHALGQV-AHCDMAKDWDPFRLSEALNYHLKPDPVAIVGCARVDDDWHARFSAVER 109

Query: 251 RYLY 254
           +YL+
Sbjct: 110 QYLF 113


>R5XB99_9CLOT (tr|R5XB99) tRNA pseudouridine synthase A 1 OS=Clostridium
           bartlettii CAG:1329 GN=BN488_00049 PE=4 SV=1
          Length = 243

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/139 (34%), Positives = 64/139 (46%), Gaps = 17/139 (12%)

Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
            KI L Y+G ++ GWQKQP    +Q  +E  +     E             E  VT +GR
Sbjct: 4   LKITLQYNGKNYCGWQKQPNALGIQGTVEKAIYEITKE-------------EVKVTASGR 50

Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
           TD GV AL QV +F T  K    R + DA+    P  + +IS  EV   FH  ++A  + 
Sbjct: 51  TDAGVHALGQVANFKTESKIPADR-LPDALNAKLPKDISIISCEEVDIDFHARYNACGKT 109

Query: 252 YLYIF---PLTDGGYKDQS 267
           Y Y+    P     YKD S
Sbjct: 110 YRYLIYNKPYRSPLYKDLS 128


>M5J7N7_9LACO (tr|M5J7N7) tRNA pseudouridine synthase OS=Lactobacillus saerimneri
           30a GN=D271_00300 PE=4 SV=1
          Length = 253

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/123 (38%), Positives = 62/123 (50%), Gaps = 12/123 (9%)

Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
           +K+ ++Y G +F G+QKQP   TVQSVIE  L      NKT    D  + I GS    GR
Sbjct: 5   YKVTIAYDGTNFAGFQKQPQQRTVQSVIEDALNKM---NKT----DEHIFIVGS----GR 53

Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
           TD GV AL QV  F  +  D+    ++  +    P  L V     V  +FH  FS   +R
Sbjct: 54  TDAGVHALAQVIHF-DFPHDIPALGMKRGLNSMLPLDLEVKDCEIVDDSFHARFSTHGKR 112

Query: 252 YLY 254
           Y+Y
Sbjct: 113 YMY 115


>K9EWN2_9CYAN (tr|K9EWN2) tRNA pseudouridine synthase A OS=Leptolyngbya sp. PCC
           7375 GN=truA PE=3 SV=1
          Length = 292

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 67/149 (44%), Gaps = 34/149 (22%)

Query: 114 EFESVASRGRGGRWARLTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQ 173
           + E+V    +G +       IV+ Y G  F GWQ+QP   TVQ+ IE  + + + +N T 
Sbjct: 9   QLEAVPKANKGNQ----RVAIVIQYQGTHFYGWQRQPAKRTVQAEIEAAIASLLGDNVT- 63

Query: 174 QLKDRGLPIEGSVTVAGRTDKGVTALQQVCSF--------YTWKKDVKPRDIEDAIYHAA 225
                   I G    AGRTD GV A  QV  F        Y W   +  R  ED +  AA
Sbjct: 64  --------IHG----AGRTDTGVHAAAQVAHFDAPKIIPAYRWASILNHRLSEDIVIRAA 111

Query: 226 PGKLRVISVSEVSRAFHPNFSAKWRRYLY 254
                    ++V   +H  +SA+WRRY Y
Sbjct: 112 ---------AQVPDDWHAQYSAQWRRYRY 131


>J9GBR9_9ZZZZ (tr|J9GBR9) tRNA pseudouridine synthase A (Fragment) OS=gut
           metagenome GN=EVA_15034 PE=4 SV=1
          Length = 114

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/124 (35%), Positives = 60/124 (48%), Gaps = 14/124 (11%)

Query: 131 TFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAG 190
           T K+V++Y G S+ G+QKQ  +  VQ+VIE  L     E          +   GS    G
Sbjct: 3   TIKLVVAYDGNSYHGFQKQKNVVAVQNVIEEALSKICGE---------AVATAGS----G 49

Query: 191 RTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWR 250
           RTD GV A  Q  +F T    +   ++  A+    P  +  IS  E+   FH  FSAKW+
Sbjct: 50  RTDAGVHAWAQTITFET-NGRIPCANMIRALSSLLPADIVAISAEEMEAGFHARFSAKWK 108

Query: 251 RYLY 254
           RY Y
Sbjct: 109 RYQY 112


>G2ED72_9FLAO (tr|G2ED72) tRNA pseudouridine synthase A OS=Bizionia argentinensis
           JUB59 GN=truA PE=3 SV=1
          Length = 249

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 70/255 (27%), Positives = 103/255 (40%), Gaps = 54/255 (21%)

Query: 130 LTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVA 189
           + + I LSY+G ++ GWQ QP   +VQ VIE  L T + +             + +V  A
Sbjct: 1   MRYFIELSYNGQAYHGWQNQPNAISVQEVIEKALSTILGQ-------------KTAVVGA 47

Query: 190 GRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKW 249
           GRTD GV A Q    F T   D     +   +    P  + V +V  V+   H  F A  
Sbjct: 48  GRTDAGVHAKQMFAHFET-DADFSIEKLSYKLNAFLPEDIAVHNVFSVTPEAHARFHATS 106

Query: 250 RRYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLL 309
           R YLY   L    +  QS+    +F             K  LE            +N+ +
Sbjct: 107 RTYLYRIALDKSAFNYQSA----YF------------VKKKLE------------INK-M 137

Query: 310 QKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVAN 369
           Q     LL+YK F   +K+       T+   Y+   ++      D +     +   + A+
Sbjct: 138 QAAANSLLNYKDFQCFSKS------KTDVNTYNCNIMQVHFEQVDGE-----LHFTIQAD 186

Query: 370 RFLRRMVRVLVATSI 384
           RFLR MVR +V T I
Sbjct: 187 RFLRNMVRAIVGTLI 201


>E3ERA5_BIFBS (tr|E3ERA5) tRNA pseudouridine synthase A OS=Bifidobacterium
           bifidum (strain S17) GN=truA PE=3 SV=1
          Length = 298

 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 73/270 (27%), Positives = 104/270 (38%), Gaps = 46/270 (17%)

Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
            +I L+Y GG F GW KQP + TVQ  IE  L T         + D   P+   +TVAGR
Sbjct: 1   MRIDLAYDGGGFFGWAKQPTIRTVQGEIERVLHTIT----RVPVDDPAEPLR--LTVAGR 54

Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAA---------------PGKLRVISVSE 236
           TD GV A  QVC       D+    +   + H +               P  + +  V+ 
Sbjct: 55  TDTGVHASHQVCHL-----DIGEETLSRCVGHMSVPPTVALKHRLQRMLPADITIHDVTV 109

Query: 237 VSRAFHPNFSAKWRRYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLE-NET 295
               F   FSA  R Y+Y          D++S   E    LR   +H  +  D +  NE 
Sbjct: 110 APSGFDARFSALERTYVY-------RVADRAS---EVDPRLRGFVLHLDADLDVVAMNEA 159

Query: 296 KSYMFSVSKVNRLLQKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADN 355
            +    +           G         R+ K +     PT   +        R P A++
Sbjct: 160 AAMTIGLHDFGSFATPNPGGTT-----IREVKTAYWRRIPTRPLVVDGMGERYRTPAAES 214

Query: 356 DEETRVMCIELVANRFLRRMVRVLVATSIR 385
           D    ++C  +VA+ F R MVR LV   I+
Sbjct: 215 D----LLCFTIVADAFARNMVRSLVGGCIQ 240


>R5UF28_9BACT (tr|R5UF28) tRNA pseudouridine synthase A OS=Alistipes finegoldii
           CAG:68 GN=BN754_02376 PE=4 SV=1
          Length = 254

 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 108/256 (42%), Gaps = 54/256 (21%)

Query: 130 LTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVA 189
           + + + L Y+G ++ GWQ+QP + +VQ  +E  L T +          RG  IE  VT A
Sbjct: 1   MRYFLELRYNGAAYCGWQRQPDMPSVQQTLERALTTLL----------RG-KIE--VTGA 47

Query: 190 GRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKW 249
           GRTD GV A   V  F   +    P  +   +    PG + V S++ V    H  F+A+ 
Sbjct: 48  GRTDTGVNASYYVAHFDCAEPVPDPAQVVYKLNFLLPGDIAVGSMTPVGADAHARFAARE 107

Query: 250 RRY-LYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRL 308
           R Y  YI P  +   +D    + +++  L  + ++++++                     
Sbjct: 108 REYRYYIEPRKNPFTRD---ATWQYYVPLDMDRMNEAAA--------------------- 143

Query: 309 LQKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVA 368
                  LL Y  F    K + N      C + HA         A   +E  V+C  + A
Sbjct: 144 ------ALLEYDDFTSFAKLNSNN-KTNICRIMHA---------AWTADERGVLCFTIRA 187

Query: 369 NRFLRRMVRVLVATSI 384
           NRFLR MVR LV T +
Sbjct: 188 NRFLRNMVRSLVGTLV 203


>I4ZAV1_9BACT (tr|I4ZAV1) tRNA pseudouridine synthase A OS=Prevotella bivia DSM
           20514 GN=truA PE=3 SV=1
          Length = 255

 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 101/258 (39%), Gaps = 51/258 (19%)

Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
           + I LSY G  + GWQ QP  ++VQ  +E  +   + E           PI  ++  AGR
Sbjct: 4   YFITLSYDGSKYHGWQIQPNGSSVQETLEKAISVLLRE-----------PI--AIIGAGR 50

Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
           TD GV A   V  F  +   V    +   +    P  + V  +  V+   H  FSA  R 
Sbjct: 51  TDAGVHARMMVAHF-DFTGSVDCHQMVYRLNRLLPHDISVSKIEPVTNDLHARFSASRRT 109

Query: 252 YLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKD-DLENETKSYMFSVSKVNRLLQ 310
           Y Y        Y+ Q S              + S + D DL NE   Y+           
Sbjct: 110 YHYYLHTQKNIYQRQYS-------------CYMSYALDFDLMNEAAQYLIGTK------- 149

Query: 311 KLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEAR----LPLADNDEETRVMCIEL 366
                   +K F +    +  +   T C L  AR +  R    +PL+  ++ T   C  +
Sbjct: 150 -------DFKCFCK----AGADVKTTICELTEARWVPIRAELSMPLSSKEQPTD-WCFII 197

Query: 367 VANRFLRRMVRVLVATSI 384
            ANRFLR MVR +V T +
Sbjct: 198 SANRFLRNMVRAVVGTLV 215


>D1XYC0_9BACT (tr|D1XYC0) tRNA pseudouridine synthase A OS=Prevotella bivia
           JCVIHMP010 GN=truA PE=3 SV=1
          Length = 255

 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 101/258 (39%), Gaps = 51/258 (19%)

Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
           + I LSY G  + GWQ QP  ++VQ  +E  +   + E           PI  ++  AGR
Sbjct: 4   YFITLSYDGSKYHGWQIQPNGSSVQETLEKAISVLLRE-----------PI--AIIGAGR 50

Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
           TD GV A   V  F  +   V    +   +    P  + V  +  V+   H  FSA  R 
Sbjct: 51  TDAGVHARMMVAHF-DFTGSVDCHQMVYRLNRLLPHDISVSKIEPVTNDLHARFSASRRT 109

Query: 252 YLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKD-DLENETKSYMFSVSKVNRLLQ 310
           Y Y        Y+ Q S              + S + D DL NE   Y+           
Sbjct: 110 YHYYLHTQKNIYQRQYS-------------CYMSYALDFDLMNEAAQYLIGTK------- 149

Query: 311 KLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEAR----LPLADNDEETRVMCIEL 366
                   +K F +    +  +   T C L  AR +  R    +PL+  ++ T   C  +
Sbjct: 150 -------DFKCFCK----AGADVKTTICELTEARWVPIRAELSMPLSSKEQPTD-WCFII 197

Query: 367 VANRFLRRMVRVLVATSI 384
            ANRFLR MVR +V T +
Sbjct: 198 SANRFLRNMVRAVVGTLV 215


>H1BNT2_9FIRM (tr|H1BNT2) tRNA pseudouridine synthase A OS=Eubacterium sp. 3_1_31
           GN=truA PE=3 SV=1
          Length = 251

 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 62/125 (49%), Gaps = 14/125 (11%)

Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
           +K V+SY G S+ GWQKQ    ++Q VIE  L      +              ++  +GR
Sbjct: 4   YKAVVSYDGSSYGGWQKQLNTTSIQEVIEQALAKMHKHD-------------VAIVASGR 50

Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
           TD GV A+ QV  F +  K ++ +    A+    P  +R+ SV +V+ AFH  F A  +R
Sbjct: 51  TDAGVHAIAQVFHFDSEMK-IQEKHWIKALNSLLPKDIRIQSVKQVTEAFHARFDAIGKR 109

Query: 252 YLYIF 256
           Y Y+ 
Sbjct: 110 YDYLI 114


>D6HS44_9FIRM (tr|D6HS44) tRNA pseudouridine synthase A OS=Erysipelotrichaceae
           bacterium 5_2_54FAA GN=truA PE=3 SV=1
          Length = 251

 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 62/125 (49%), Gaps = 14/125 (11%)

Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
           +K V+SY G S+ GWQKQ    ++Q VIE  L      +              ++  +GR
Sbjct: 4   YKAVVSYDGSSYGGWQKQLNTTSIQEVIEQALAKMHKHD-------------VAIVASGR 50

Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
           TD GV A+ QV  F +  K ++ +    A+    P  +R+ SV +V+ AFH  F A  +R
Sbjct: 51  TDAGVHAIAQVFHFDSEMK-IQEKHWIKALNSLLPKDIRIQSVKQVTEAFHARFDAIGKR 109

Query: 252 YLYIF 256
           Y Y+ 
Sbjct: 110 YDYLI 114


>N1ZLC8_9LACO (tr|N1ZLC8) tRNA pseudouridine synthase A OS=Lactobacillus murinus
           ASF361 GN=C822_01437 PE=4 SV=1
          Length = 250

 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/123 (37%), Positives = 60/123 (48%), Gaps = 12/123 (9%)

Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
           + I L+Y G +F G+Q QP   TVQSV+E  L      NK  +  D  + I GS    GR
Sbjct: 5   YMITLAYDGTNFAGFQAQPKQRTVQSVLEKAL------NKMSKFDDY-ITIYGS----GR 53

Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
           TD GV AL QV  F  +  D+ P  +   +    P    VI    VS  FH  F+   +R
Sbjct: 54  TDSGVHALGQVIHF-DFPHDISPEGMLKGLNSMLPLDCEVIDCKIVSDDFHARFTTHGKR 112

Query: 252 YLY 254
           Y+Y
Sbjct: 113 YMY 115


>F2MKK7_LACCD (tr|F2MKK7) tRNA pseudouridine synthase A OS=Lactobacillus casei
           (strain BD-II) GN=truA PE=3 SV=1
          Length = 247

 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 69/253 (27%), Positives = 104/253 (41%), Gaps = 49/253 (19%)

Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
           +K+ L+Y G +F G+Q QP   TVQ V++  L        T+  K + + ++GS    GR
Sbjct: 4   YKVTLAYDGTNFAGYQVQPKQRTVQGVLQKAL--------TKMTKGQPVHVDGS----GR 51

Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
           TD GV AL QV SF  +  ++    +  A+    P  + ++    V   FH  +SAK +R
Sbjct: 52  TDSGVHALGQVISF-DYPGNIPAESMLKAMNSLMPLDIEILKAEIVDADFHARYSAKGKR 110

Query: 252 YLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQK 311
           YLY                       R    + ++  + L      Y   V ++   L+ 
Sbjct: 111 YLY-----------------------RVARGYYTNPFNRLYTGHYPYKLDVQRIEVALKD 147

Query: 312 LEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVANRF 371
           L G    +  FA    AS          +Y A   E        D  T  +  E   N F
Sbjct: 148 LVGT-HDFTSFA----ASGGVIVDKVRTIYEATVRE--------DPVTNEIIFEFYGNGF 194

Query: 372 LRRMVRVLVATSI 384
           L  MVR+LVAT++
Sbjct: 195 LYNMVRILVATAL 207


>F2MC17_LACCC (tr|F2MC17) tRNA pseudouridine synthase A OS=Lactobacillus casei
           (strain LC2W) GN=truA PE=3 SV=1
          Length = 247

 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 69/253 (27%), Positives = 104/253 (41%), Gaps = 49/253 (19%)

Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
           +K+ L+Y G +F G+Q QP   TVQ V++  L        T+  K + + ++GS    GR
Sbjct: 4   YKVTLAYDGTNFAGYQVQPKQRTVQGVLQKAL--------TKMTKGQPVHVDGS----GR 51

Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
           TD GV AL QV SF  +  ++    +  A+    P  + ++    V   FH  +SAK +R
Sbjct: 52  TDSGVHALGQVISF-DYPGNIPAESMLKAMNSLMPLDIEILKAEIVDADFHARYSAKGKR 110

Query: 252 YLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQK 311
           YLY                       R    + ++  + L      Y   V ++   L+ 
Sbjct: 111 YLY-----------------------RVARGYYTNPFNRLYTGHYPYKLDVQRIEVALKD 147

Query: 312 LEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVANRF 371
           L G    +  FA    AS          +Y A   E        D  T  +  E   N F
Sbjct: 148 LVGT-HDFTSFA----ASGGVIVDKVRTIYEATVRE--------DPVTNEIIFEFYGNGF 194

Query: 372 LRRMVRVLVATSI 384
           L  MVR+LVAT++
Sbjct: 195 LYNMVRILVATAL 207


>D8GCI2_LACCZ (tr|D8GCI2) tRNA pseudouridine synthase A OS=Lactobacillus casei
           (strain Zhang) GN=truA PE=3 SV=1
          Length = 247

 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 69/253 (27%), Positives = 104/253 (41%), Gaps = 49/253 (19%)

Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
           +K+ L+Y G +F G+Q QP   TVQ V++  L        T+  K + + ++GS    GR
Sbjct: 4   YKVTLAYDGTNFAGYQVQPKQRTVQGVLQKAL--------TKMTKGQPVHVDGS----GR 51

Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
           TD GV AL QV SF  +  ++    +  A+    P  + ++    V   FH  +SAK +R
Sbjct: 52  TDSGVHALGQVISF-DYPGNIPAESMLKAMNSLMPLDIEILKAEIVDADFHARYSAKGKR 110

Query: 252 YLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQK 311
           YLY                       R    + ++  + L      Y   V ++   L+ 
Sbjct: 111 YLY-----------------------RVARGYYTNPFNRLYTGHYPYKLDVQRIEVALKD 147

Query: 312 LEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVANRF 371
           L G    +  FA    AS          +Y A   E        D  T  +  E   N F
Sbjct: 148 LVGT-HDFTSFA----ASGGVIVDKVRTIYEATVRE--------DPVTNEIIFEFYGNGF 194

Query: 372 LRRMVRVLVATSI 384
           L  MVR+LVAT++
Sbjct: 195 LYNMVRILVATAL 207


>B3EQM8_CHLPB (tr|B3EQM8) tRNA pseudouridine synthase A OS=Chlorobium
           phaeobacteroides (strain BS1) GN=truA PE=3 SV=1
          Length = 233

 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 109/258 (42%), Gaps = 56/258 (21%)

Query: 134 IVLSYHGGSFDGWQKQP-GLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRT 192
           + + Y G  F GWQKQP G+ TVQ V+E  L   V E             E  +T AGRT
Sbjct: 1   MTIEYDGTDFSGWQKQPEGVVTVQGVLETTLSRIVQE-------------EVVMTAAGRT 47

Query: 193 DKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRY 252
           D+GV A  QV +F T       R +  ++    P  + +  + EV  +FH  +SA +R Y
Sbjct: 48  DRGVHARGQVANFRTASCLSTGRLLH-SLNALLPSTVCIRDMQEVPDSFHARYSALFREY 106

Query: 253 LYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQKL 312
            Y F        ++ S  G+ +  +    +                   V ++NR   +L
Sbjct: 107 RYFF-------LEKPSALGKRYAGVYGGRL------------------DVDRLNRCAGEL 141

Query: 313 EGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVANRFL 372
            G+   +  +A++      +   T C ++ A            DE+   +   + ANRFL
Sbjct: 142 VGR-HDFSAYAKEDA----QNGSTFCTVFGA-------SWGRQDEK---VVFRIAANRFL 186

Query: 373 RRMVRVLVATSIREAAAG 390
           R MVR LV+  + EA  G
Sbjct: 187 RTMVRFLVSAQL-EAGPG 203


>R8ZUA2_9LEPT (tr|R8ZUA2) tRNA pseudouridine(38-40) synthase OS=Leptospira
           yanagawae serovar Saopaulo str. Sao Paulo = ATCC 700523
           GN=truA PE=4 SV=1
          Length = 264

 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 99/251 (39%), Gaps = 47/251 (18%)

Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
           + +++ Y G  F+GWQKQ  L TVQS IE  L   + +N   +L           +VAGR
Sbjct: 4   YALLVEYDGTHFNGWQKQKNLPTVQSSIESALDIILRKNPASRL-----------SVAGR 52

Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
           TD GV AL  VC+F T         +  ++       + V +V EV   FH  FS   R 
Sbjct: 53  TDTGVHALGMVCNFKTRDPIPNFHKLLVSLNSLTQSGVSVKNVIEVPPEFHARFSCTGRE 112

Query: 252 YLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQK 311
           Y+Y    +                       ++SS  +      KS++    KV R LQ 
Sbjct: 113 YIYKLYYSK----------------------YESSFVEGRAFWVKSHI-DWDKVERQLQV 149

Query: 312 LEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVANRF 371
           L G+    K F   TKA    G          RA+     +           I + AN F
Sbjct: 150 LVGE----KDFRSLTKAKSMSG---------KRAVREIFSIQLEKITPEWYQIRIRANGF 196

Query: 372 LRRMVRVLVAT 382
           +  MVR+ V T
Sbjct: 197 MHNMVRITVGT 207


>D5ARE1_RHOCB (tr|D5ARE1) tRNA pseudouridine synthase A OS=Rhodobacter capsulatus
           (strain ATCC BAA-309 / NBRC 16581 / SB1003) GN=truA PE=3
           SV=1
          Length = 255

 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/127 (35%), Positives = 63/127 (49%), Gaps = 17/127 (13%)

Query: 129 RLTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTV 188
           R  F+I   Y GG F GWQ+Q  L +VQ  +E  L              R  P E ++  
Sbjct: 3   RFAFRI--EYDGGPFAGWQRQAVLPSVQGAVEAALA-------------RLEPGEHTIAA 47

Query: 189 AGRTDKGVTALQQVCSFYTWKKDVKPRDIEDAI-YHAAPGKLRVISVSEVSRAFHPNFSA 247
           AGRTD GV A  QV +     KD  P  + +A+ +H  P  + +++ + V   FH  FSA
Sbjct: 48  AGRTDAGVHATAQV-AHADLAKDWDPFRLSEALNHHLRPDPVAIVACARVGDDFHARFSA 106

Query: 248 KWRRYLY 254
           + RRYL+
Sbjct: 107 RERRYLF 113


>J4UAW8_9FIRM (tr|J4UAW8) tRNA pseudouridine synthase A OS=Eubacterium sp. AS15
           GN=truA PE=3 SV=1
          Length = 245

 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 60/121 (49%), Gaps = 14/121 (11%)

Query: 134 IVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTD 193
           I +SY G ++ GWQ+Q    ++Q  IE  +    +E             E +V  +GRTD
Sbjct: 6   IEISYDGTNYSGWQRQKNAISIQEKIEDAISLICNE-------------EINVIASGRTD 52

Query: 194 KGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYL 253
            GV AL Q+ +F T  + +  +    AI    P  +R++S  EV   F+  FSAK + Y+
Sbjct: 53  AGVHALSQIANFNTSSR-IDAKKFAKAINTKLPDDIRILSSKEVDEDFNARFSAKKKTYV 111

Query: 254 Y 254
           Y
Sbjct: 112 Y 112


>D2R418_PIRSD (tr|D2R418) tRNA pseudouridine synthase A OS=Pirellula staleyi
           (strain ATCC 27377 / DSM 6068 / ICPB 4128) GN=truA PE=3
           SV=1
          Length = 285

 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 63/135 (46%), Gaps = 16/135 (11%)

Query: 131 TFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAG 190
           TFK+ L+Y G +F GWQ QP   TVQ  +E  + T                +      +G
Sbjct: 3   TFKLTLAYDGTNFGGWQWQPNRRTVQDELEKAVETITG-------------VRSRFVASG 49

Query: 191 RTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWR 250
           RTD GV AL QV +F + +  + P  +   +    P  + +  V EV  AFHP   A  +
Sbjct: 50  RTDAGVHALGQVAAFSS-ETGIDPAGLLKGLNAKVPDDIFIFDVVEVPLAFHPIRDAVRK 108

Query: 251 RYLYIFPLTDGGYKD 265
           RY Y+  + DG  +D
Sbjct: 109 RYRYV--VQDGPLRD 121


>I0FBE1_BORCA (tr|I0FBE1) tRNA pseudouridine synthase A OS=Borrelia crocidurae
           (strain Achema) GN=truA PE=3 SV=1
          Length = 245

 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 66/253 (26%), Positives = 107/253 (42%), Gaps = 60/253 (23%)

Query: 136 LSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKG 195
           ++Y G  + G+Q QP   T+Q  IE  L      NKT+            +  AGRTDKG
Sbjct: 8   IAYDGSLYHGFQIQPTKPTIQGEIEKALEKI---NKTK----------VKIQSAGRTDKG 54

Query: 196 VTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYLYI 255
           V A +Q+ SFY  K ++  ++++ AI       +R+I +  VS  F P F AK R+Y Y 
Sbjct: 55  VHAKRQIISFYI-KININLKNLKTAINSLLKNDIRIIKLKYVSNEFQPRFHAKKRKYTY- 112

Query: 256 FPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYM----FSVSKVNRLLQK 311
                                + NNE H          E K+Y      +++++N + + 
Sbjct: 113 --------------------YILNNENHYPWE------EYKAYYVRKKLNINRLNTMAEM 146

Query: 312 LEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVANRF 371
           L G L  +  F+              C      +    + LA   ++ + +  E++ + F
Sbjct: 147 LIG-LHDFTTFS--------------CIRDKTNSKLKEIYLAKFKKKNKFIVFEIIGSSF 191

Query: 372 LRRMVRVLVATSI 384
           L +MVR +V T I
Sbjct: 192 LWKMVRSIVGTMI 204


>E8WYA8_ACISM (tr|E8WYA8) tRNA pseudouridine synthase A OS=Acidobacterium sp.
           (strain MP5ACTX9) GN=truA PE=3 SV=1
          Length = 258

 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 62/127 (48%), Gaps = 15/127 (11%)

Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
           +K+ L+Y G ++ GWQ QPGL TVQ  +   L     E    Q         GS    GR
Sbjct: 4   WKMTLAYDGTAYHGWQVQPGLPTVQGRLAAALKLLTGETVLPQ---------GS----GR 50

Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
           TD GV AL QV SF   +  +   ++  A+  A PG +RV+SV  V   FH    A  + 
Sbjct: 51  TDAGVHALGQVVSF-GLEAPIPGENLLRALNRALPGAIRVLSVEAVEAEFHARRGAVRKT 109

Query: 252 YLY-IFP 257
           Y Y +FP
Sbjct: 110 YEYRLFP 116


>C1DWJ7_SULAA (tr|C1DWJ7) tRNA pseudouridine synthase A OS=Sulfurihydrogenibium
           azorense (strain Az-Fu1 / DSM 15241 / OCM 825) GN=truA
           PE=3 SV=1
          Length = 244

 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 74/258 (28%), Positives = 106/258 (41%), Gaps = 65/258 (25%)

Query: 129 RLTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTV 188
           R  +K+ +SY G  + GWQ+Q     +Q +IE  L     E  T             +  
Sbjct: 4   RYNYKLTISYIGTRYSGWQRQKNAVGIQQIIEDLLEKLFKEKIT-------------LIG 50

Query: 189 AGRTDKGVTALQQVCSFYTWK-KDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSA 247
           +GRTD GV AL QV +F T+  KD  P  I   +    P  + V  V EV   F+  FSA
Sbjct: 51  SGRTDAGVHALNQVANFKTYSYKD--PSTIYSYLNAKLPRDISVKKVEEVDLNFNARFSA 108

Query: 248 KWRRYLY-IFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVN 306
           K + YLY I+   D        G G FFD              DL+            + 
Sbjct: 109 KGKTYLYRIYTKPD----PFLYGRGWFFDK-------------DLD------------IV 139

Query: 307 RLLQKLEGKLLSYK---MFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMC 363
           ++LQ +E  L  YK     A++    R E    E  LY+               + +++ 
Sbjct: 140 KMLQGIE-ILKKYKDLTSLAKEGNYIRKEVDLREIKLYY---------------DGKIID 183

Query: 364 IELVANRFLRRMVRVLVA 381
           IE+ A+ FLR +VR +V 
Sbjct: 184 IEITASHFLRNLVRRIVG 201


>K6R823_LACCA (tr|K6R823) tRNA pseudouridine synthase A OS=Lactobacillus casei
           CRF28 GN=truA PE=3 SV=1
          Length = 247

 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 69/253 (27%), Positives = 104/253 (41%), Gaps = 49/253 (19%)

Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
           +K+ L+Y G +F G+Q QP   TVQ V++  L        T+  K + + ++GS    GR
Sbjct: 4   YKVTLAYDGTNFAGYQVQPKQRTVQGVLQKAL--------TKMTKGQLVHVDGS----GR 51

Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
           TD GV AL QV SF  +  ++    +  A+    P  + ++    V   FH  +SAK +R
Sbjct: 52  TDSGVHALGQVISF-DYPGNIPAESMLKAMNSLMPLDIEILKAEIVDADFHARYSAKGKR 110

Query: 252 YLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQK 311
           YLY                       R    + ++  + L      Y   V ++   L+ 
Sbjct: 111 YLY-----------------------RVARGYYTNPFNRLYTGHYPYKLDVQRIEVALKD 147

Query: 312 LEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVANRF 371
           L G    +  FA    AS          +Y A   E        D  T  +  E   N F
Sbjct: 148 LVGT-HDFTSFA----ASGGVIVDKVRTIYEATVRE--------DPVTNEIIFEFYGNGF 194

Query: 372 LRRMVRVLVATSI 384
           L  MVR+LVAT++
Sbjct: 195 LYNMVRILVATAL 207


>E4NZ31_BIFBP (tr|E4NZ31) tRNA pseudouridine synthase A OS=Bifidobacterium
           bifidum (strain PRL2010) GN=truA PE=3 SV=1
          Length = 303

 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 73/272 (26%), Positives = 104/272 (38%), Gaps = 46/272 (16%)

Query: 130 LTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVA 189
           +  +I L+Y GG F GW KQP + TVQ  IE  L T         + D   P+   +TVA
Sbjct: 4   MRLRIDLAYDGGGFFGWAKQPTIRTVQGEIERVLHTI----TRVPVDDPAEPLR--LTVA 57

Query: 190 GRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAA---------------PGKLRVISV 234
           GRTD GV A  QVC       D+    +   + H +               P  + +  V
Sbjct: 58  GRTDTGVHASHQVCHL-----DIGEETLSRCVGHMSVPPTVALKHRLQRMLPADITIHDV 112

Query: 235 SEVSRAFHPNFSAKWRRYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIH-DSSSKDDLEN 293
           +     F   FSA  R Y+Y          D++S   E    LR   +H D+       N
Sbjct: 113 TVAPSGFDARFSALERTYVY-------RVADRAS---EVDPRLRGFVLHLDADLDVAAMN 162

Query: 294 ETKSYMFSVSKVNRLLQKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLA 353
           E  +    +           G         R+ K +     PT   +        R P A
Sbjct: 163 EAAAMTIGLHDFGSFATPNPGGTT-----IREVKTAYWRRIPTRPLVVDGMGERYRTPAA 217

Query: 354 DNDEETRVMCIELVANRFLRRMVRVLVATSIR 385
           ++D    ++C  +VA+ F R MVR LV   I+
Sbjct: 218 ESD----LLCFTIVADAFARNMVRSLVGGCIQ 245


>K2IRF8_BIFBI (tr|K2IRF8) tRNA pseudouridine synthase A OS=Bifidobacterium
           bifidum LMG 13195 GN=truA PE=3 SV=1
          Length = 303

 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 73/272 (26%), Positives = 104/272 (38%), Gaps = 46/272 (16%)

Query: 130 LTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVA 189
           +  +I L+Y GG F GW KQP + TVQ  IE  L T         + D   P+   +TVA
Sbjct: 4   MRLRIDLAYDGGGFFGWAKQPTIRTVQGEIERVLHTI----TRVPVDDPAEPLR--LTVA 57

Query: 190 GRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAA---------------PGKLRVISV 234
           GRTD GV A  QVC       D+    +   + H +               P  + +  V
Sbjct: 58  GRTDTGVHASHQVCHL-----DIGEETLSRCVGHMSVPPTVALKHRLQRMLPADITIHDV 112

Query: 235 SEVSRAFHPNFSAKWRRYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIH-DSSSKDDLEN 293
           +     F   FSA  R Y+Y          D++S   E    LR   +H D+       N
Sbjct: 113 TVAPSGFDARFSALERTYVY-------RVADRAS---EVDPRLRGFVLHLDADLDVAAMN 162

Query: 294 ETKSYMFSVSKVNRLLQKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLA 353
           E  +    +           G         R+ K +     PT   +        R P A
Sbjct: 163 EAAAMTIGLHDFGSFATPNPGGTT-----IREVKTAYWRRIPTRPLVVDGMGERYRTPAA 217

Query: 354 DNDEETRVMCIELVANRFLRRMVRVLVATSIR 385
           ++D    ++C  +VA+ F R MVR LV   I+
Sbjct: 218 ESD----LLCFTIVADAFARNMVRSLVGGCIQ 245


>E0QJU7_9FIRM (tr|E0QJU7) tRNA pseudouridine synthase A OS=Eubacterium yurii
           subsp. margaretiae ATCC 43715 GN=truA PE=3 SV=1
          Length = 245

 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 58/119 (48%), Gaps = 14/119 (11%)

Query: 136 LSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKG 195
           +SY G ++ GWQ+Q    ++Q  IE  +    +E             E +V  +GRTD G
Sbjct: 8   ISYDGTNYSGWQRQKNAISIQEKIEDAISLICNE-------------EINVIASGRTDAG 54

Query: 196 VTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYLY 254
           V AL Q+ +F T    +  +    AI    P  +R++S  EV   F+  FSAK + Y+Y
Sbjct: 55  VHALSQIANFST-SSSIDAKKFAKAINTKLPDDIRILSSKEVDEDFNARFSAKKKTYIY 112


>E3GGZ0_EUBLK (tr|E3GGZ0) tRNA pseudouridine synthase A OS=Eubacterium limosum
           (strain KIST612) GN=truA PE=3 SV=1
          Length = 244

 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 66/139 (47%), Gaps = 17/139 (12%)

Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
            +++++Y G  + GWQ+QP   TV+  + G +     E  T         + GS    GR
Sbjct: 4   IQMIIAYKGTRYAGWQRQPNAPTVEEALTGAIKAVTGETVT---------LYGS----GR 50

Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
           TD GV AL Q   F+T  + V P     A+    PG +RV+S  E    FH  +SAK + 
Sbjct: 51  TDAGVHALGQSAHFHTESR-VPPERFAAALNTRLPGDIRVLSSCEAPEGFHSRYSAKGKV 109

Query: 252 Y---LYIFPLTDGGYKDQS 267
           Y   LY+ P+    Y + S
Sbjct: 110 YTYQLYLNPVLSPFYAEYS 128


>D8IMD1_LACSC (tr|D8IMD1) tRNA pseudouridine synthase A OS=Lactobacillus
           salivarius (strain CECT 5713) GN=truA PE=3 SV=1
          Length = 256

 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 68/251 (27%), Positives = 101/251 (40%), Gaps = 48/251 (19%)

Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
           FK+ L+Y G +F G+Q QP   TVQ V+E  +      NK  + KD  + + GS    GR
Sbjct: 5   FKVTLAYDGTNFAGFQAQPNQRTVQFVLEKAI------NKMSK-KDEYITVYGS----GR 53

Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
           TD GV AL QV  F  +   +  + +   +    P    V+    V   FH  ++   +R
Sbjct: 54  TDSGVHALGQVVHF-DFPHPISAKGMLRGLNSMLPLDCEVVDCKIVPNDFHSRYTTHGKR 112

Query: 252 YLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQK 311
           YLY                GEF +  +            L      Y   + K+   +  
Sbjct: 113 YLY------------RVSRGEFVNPFKR-----------LYTGHYKYPLDIEKIKEAMPD 149

Query: 312 LEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVANRF 371
           +EG    Y  F     AS ++       +Y A+  E ++    NDE    +  E   N F
Sbjct: 150 VEGT-HDYSSFV----ASGSQAKSHVRTIYEAKVYEDKV----NDE----IVFEFYGNGF 196

Query: 372 LRRMVRVLVAT 382
           L   VR++VAT
Sbjct: 197 LYNQVRIMVAT 207


>C7TM62_LACRL (tr|C7TM62) tRNA pseudouridine synthase A OS=Lactobacillus
           rhamnosus (strain Lc 705) GN=truA PE=3 SV=1
          Length = 247

 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 107/254 (42%), Gaps = 51/254 (20%)

Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
           +K+ L+Y G +F G+Q QP   TVQ V++  L        T+  K + + ++GS    GR
Sbjct: 4   YKVTLAYDGTNFAGYQVQPKQRTVQGVLQKAL--------TKMAKGQPVHVDGS----GR 51

Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
           TD GV AL QV SF  +  ++    +  A+    P  + ++    V+  FH  +SAK +R
Sbjct: 52  TDSGVHALGQVISF-DYPGNIPAESMLRAMNSLMPLDIEILKAEIVAADFHARYSAKGKR 110

Query: 252 YLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQK 311
           Y Y                       R    + ++  + L      Y   V ++   L+ 
Sbjct: 111 YRY-----------------------RVARGYYTNPFNRLYTGHYPYKLDVKRIEVALKD 147

Query: 312 LEGKLLSYKMFARDTKASRNEGPPTECFLYHARAI-EARLPLADNDEETRVMCIELVANR 370
           L G    +  FA      +++           R I EA +   + D  T  +  E   N 
Sbjct: 148 LVGT-HDFTSFAASGGVIKDK----------VRTIYEATV---EEDPATNELIFEFYGNG 193

Query: 371 FLRRMVRVLVATSI 384
           FL  MVR+LVAT++
Sbjct: 194 FLYNMVRILVATAL 207


>G7UYT6_LACRH (tr|G7UYT6) tRNA pseudouridine synthase A OS=Lactobacillus
           rhamnosus ATCC 8530 GN=truA PE=3 SV=1
          Length = 247

 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 107/254 (42%), Gaps = 51/254 (20%)

Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
           +K+ L+Y G +F G+Q QP   TVQ V++  L        T+  K + + ++GS    GR
Sbjct: 4   YKVTLAYDGTNFAGYQVQPKQRTVQGVLQKAL--------TKMAKGQPVHVDGS----GR 51

Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
           TD GV AL QV SF  +  ++    +  A+    P  + ++    V+  FH  +SAK +R
Sbjct: 52  TDSGVHALGQVISF-DYPGNIPAESMLRAMNSLMPLDIEILKAEIVAADFHARYSAKGKR 110

Query: 252 YLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQK 311
           Y Y                       R    + ++  + L      Y   V ++   L+ 
Sbjct: 111 YRY-----------------------RVARGYYTNPFNRLYTGHYPYKLDVKRIEVALKD 147

Query: 312 LEGKLLSYKMFARDTKASRNEGPPTECFLYHARAI-EARLPLADNDEETRVMCIELVANR 370
           L G    +  FA      +++           R I EA +   + D  T  +  E   N 
Sbjct: 148 LVGT-HDFTSFAASGGVIKDK----------VRTIYEATV---EEDPATNELIFEFYGNG 193

Query: 371 FLRRMVRVLVATSI 384
           FL  MVR+LVAT++
Sbjct: 194 FLYNMVRILVATAL 207


>E1JMM5_9LACO (tr|E1JMM5) tRNA pseudouridine synthase A OS=Lactobacillus
           salivarius ACS-116-V-Col5a GN=truA PE=3 SV=1
          Length = 256

 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 68/251 (27%), Positives = 101/251 (40%), Gaps = 48/251 (19%)

Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
           FK+ L+Y G +F G+Q QP   TVQ V+E  +      NK  + KD  + + GS    GR
Sbjct: 5   FKVTLAYDGTNFAGFQAQPNQRTVQFVLEKAI------NKMSK-KDEYITVYGS----GR 53

Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
           TD GV AL QV  F  +   +  + +   +    P    V+    V   FH  ++   +R
Sbjct: 54  TDSGVHALGQVVHF-DFPHPISAKGMLRGLNSMLPLDCEVVDCKIVPNDFHSRYTTHGKR 112

Query: 252 YLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQK 311
           YLY                GEF +  +            L      Y   + K+   +  
Sbjct: 113 YLY------------RVSRGEFVNPFKR-----------LYTGHYKYPLDIEKIKEAMPD 149

Query: 312 LEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVANRF 371
           +EG    Y  F     AS ++       +Y A+  E ++    NDE    +  E   N F
Sbjct: 150 VEGT-HDYSSFV----ASGSQAKSHVRTIYEAKVYEDKV----NDE----IVFEFYGNGF 196

Query: 372 LRRMVRVLVAT 382
           L   VR++VAT
Sbjct: 197 LYNQVRIMVAT 207


>R5LA20_9SPIR (tr|R5LA20) tRNA pseudouridine synthase A OS=Brachyspira sp.
           CAG:700 GN=BN758_01530 PE=4 SV=1
          Length = 248

 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 59/126 (46%), Gaps = 13/126 (10%)

Query: 130 LTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVA 189
              KI++ Y G  F GWQ QP L T+Q  I   +         Q++  + + I G     
Sbjct: 2   FNIKIIVQYDGTDFCGWQIQPNLRTIQGEIYKAV---------QKIYSKKITIYG----C 48

Query: 190 GRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKW 249
           GRTD GV AL QV +F   K  V    +  A+    P  +R+IS   +   F+   SA +
Sbjct: 49  GRTDAGVHALGQVANFRIPKMLVPIEKVHIALNSCLPKDIRIISAEIMPENFNARASANF 108

Query: 250 RRYLYI 255
           R YLYI
Sbjct: 109 REYLYI 114


>C2EHF2_9LACO (tr|C2EHF2) tRNA pseudouridine synthase A OS=Lactobacillus
           salivarius ATCC 11741 GN=truA PE=3 SV=1
          Length = 256

 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 68/251 (27%), Positives = 101/251 (40%), Gaps = 48/251 (19%)

Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
           FK+ L+Y G +F G+Q QP   TVQ V+E  +      NK  + KD  + + GS    GR
Sbjct: 5   FKVTLAYDGTNFAGFQAQPNQRTVQFVLEKAI------NKMSK-KDEYITVYGS----GR 53

Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
           TD GV AL QV  F  +   +  + +   +    P    V+    V   FH  ++   +R
Sbjct: 54  TDSGVHALGQVVHF-DFPHPISAKGMLRGLNSMLPLDCEVVDCKIVPNDFHSRYTTHGKR 112

Query: 252 YLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQK 311
           YLY                GEF +  +            L      Y   + K+   +  
Sbjct: 113 YLY------------RVSRGEFVNPFKR-----------LYTGHYKYPLDIEKIKEAMPD 149

Query: 312 LEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVANRF 371
           +EG    Y  F     AS ++       +Y A+  E ++    NDE    +  E   N F
Sbjct: 150 VEGT-HDYSSFV----ASGSQAKSHVRTIYEAKVYEDKV----NDE----IVFEFYGNGF 196

Query: 372 LRRMVRVLVAT 382
           L   VR++VAT
Sbjct: 197 LYNQVRIMVAT 207


>E7NVA1_TREPH (tr|E7NVA1) tRNA pseudouridine synthase A OS=Treponema phagedenis
           F0421 GN=truA PE=3 SV=1
          Length = 261

 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 104/253 (41%), Gaps = 52/253 (20%)

Query: 136 LSYHGGSFDGWQKQP--GLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTD 193
           +SY G  F GWQKQ   G+ T  + I+G +     E    ++  +   I G    AGRTD
Sbjct: 11  ISYDGTFFSGWQKQVKNGIETFPT-IQGEI-----EKAASKIHKQKKEIIG----AGRTD 60

Query: 194 KGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYL 253
            GV A+ Q  +F+T  + ++ +    A     P ++RV+   EVS   H  FSA+ R Y 
Sbjct: 61  TGVHAIGQAANFFTEIQTIEAKSFIPAFNSLLPKQIRVVDAQEVSPQLHARFSAQARTYR 120

Query: 254 YIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQKLE 313
           Y                  F    +    H+ +       + K Y   +S +NR    L 
Sbjct: 121 Y------------------FIQCAKREFAHEQA----YCWQIKRYP-DISTLNRYAAVLR 157

Query: 314 GKL-LSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVANRFL 372
           G+L  +   FA+D  AS++    +  F                  E   +  E+ AN FL
Sbjct: 158 GELDCTSFSFAKDQSASKSRYIFSAHFFI----------------EKDFLVFEISANAFL 201

Query: 373 RRMVRVLVATSIR 385
            RMVR L  T +R
Sbjct: 202 WRMVRSLTGTLLR 214


>I3WJN9_BIFBI (tr|I3WJN9) tRNA pseudouridine synthase A OS=Bifidobacterium
           bifidum BGN4 GN=truA PE=3 SV=1
          Length = 304

 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 73/272 (26%), Positives = 104/272 (38%), Gaps = 46/272 (16%)

Query: 130 LTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVA 189
           +  +I L+Y GG F GW KQP + TVQ  IE  L T         + D   P+   +TVA
Sbjct: 5   MRLRIDLAYDGGGFFGWAKQPTIRTVQGEIERVLHTI----TRVPVDDPAEPLR--LTVA 58

Query: 190 GRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAA---------------PGKLRVISV 234
           GRTD GV A  QVC       D+    +   + H +               P  + +  V
Sbjct: 59  GRTDTGVHASHQVCHL-----DIGEETLSRCVGHMSVPPTVALKHRLQRMLPADITIHDV 113

Query: 235 SEVSRAFHPNFSAKWRRYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIH-DSSSKDDLEN 293
           +     F   FSA  R Y+Y          D++S   E    LR   +H D+       N
Sbjct: 114 TVAPSGFDARFSALERTYVY-------RVADRAS---EVDPRLRGFVLHLDADLDVAAMN 163

Query: 294 ETKSYMFSVSKVNRLLQKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLA 353
           E  +    +           G         R+ K +     PT   +        R P A
Sbjct: 164 EAAAMTIGLHDFGSFATPNPGGTT-----IREVKTAYWRRIPTRPLVVDGMGERYRTPAA 218

Query: 354 DNDEETRVMCIELVANRFLRRMVRVLVATSIR 385
           ++D    ++C  +VA+ F R MVR LV   I+
Sbjct: 219 ESD----LLCFTIVADAFARNMVRSLVGGCIQ 246


>J4VU16_9FUSO (tr|J4VU16) tRNA pseudouridine synthase A OS=Fusobacterium
           necrophorum subsp. funduliforme Fnf 1007 GN=truA PE=3
           SV=1
          Length = 242

 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 103/253 (40%), Gaps = 54/253 (21%)

Query: 133 KIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRT 192
           KI   Y G SF G+Q+QP   TVQ  IE  L   + E             +  +T +GRT
Sbjct: 5   KISYQYDGSSFMGFQRQPNQRTVQGEIEKSLFHILRE-------------KIDLTSSGRT 51

Query: 193 DKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRY 252
           D+GV A+QQV +F+T   ++    +  A+    P  + ++ V EV   FH  FSAK R Y
Sbjct: 52  DRGVHAIQQVSNFFT-AVNIPSDRLFYALSRNLPEDILLLQVEEVDSEFHARFSAKTRSY 110

Query: 253 LYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQKL 312
            Y                              +  K+  E+  K+Y+    +    L+ L
Sbjct: 111 RYCI----------------------------TWKKNPFEHRYKAYVKEKIESTEFLKIL 142

Query: 313 EGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVANRFL 372
           +  +  +       + S    P  E +      +E              M I++VAN FL
Sbjct: 143 QVFIGRHNFQNFRLQDSSFANPMREIYSISVEEVENG------------MNIDIVANAFL 190

Query: 373 RRMVRVLVATSIR 385
           +  +R+++ T+++
Sbjct: 191 KSQIRIMIGTALQ 203


>E5BNB6_9FUSO (tr|E5BNB6) tRNA pseudouridine synthase A OS=Fusobacterium sp. D12
           GN=truA PE=3 SV=1
          Length = 242

 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 103/253 (40%), Gaps = 54/253 (21%)

Query: 133 KIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRT 192
           KI   Y G SF G+Q+QP   TVQ  IE  L   + E             +  +T +GRT
Sbjct: 5   KISYQYDGSSFMGFQRQPNQRTVQGEIEKSLFHILRE-------------KIDLTSSGRT 51

Query: 193 DKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRY 252
           D+GV A+QQV +F+T   ++    +  A+    P  + ++ V EV   FH  FSAK R Y
Sbjct: 52  DRGVHAIQQVSNFFT-AVNIPSDRLFYALSRNLPEDILLLQVEEVDSEFHARFSAKTRSY 110

Query: 253 LYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQKL 312
            Y                              +  K+  E+  K+Y+    +    L+ L
Sbjct: 111 RYCI----------------------------TWKKNPFEHRYKAYVKEKIESTEFLKIL 142

Query: 313 EGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVANRFL 372
           +  +  +       + S    P  E +      +E              M I++VAN FL
Sbjct: 143 QVFIGRHNFQNFRLQDSSFANPMREIYSISVEEVENG------------MNIDIVANAFL 190

Query: 373 RRMVRVLVATSIR 385
           +  +R+++ T+++
Sbjct: 191 KSQIRIMIGTALQ 203


>F2KYJ5_PREDF (tr|F2KYJ5) tRNA pseudouridine synthase A OS=Prevotella denticola
           (strain F0289) GN=truA PE=3 SV=1
          Length = 255

 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 78/257 (30%), Positives = 99/257 (38%), Gaps = 51/257 (19%)

Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
           + I LSY G ++ GWQ QP   +VQ V+E  L   + E  T             VT AGR
Sbjct: 6   YFITLSYDGTAYHGWQIQPNGISVQEVLERSLSILLKETIT-------------VTGAGR 52

Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHA---APGKLRVISVSEVSRAFHPNFSAK 248
           TD GV     V  F T     +P D E  +Y      P  + V  +  VS   H  FSA 
Sbjct: 53  TDAGVHGRMMVAHFDT----AQPFDSEQLVYKMNRLLPRDVSVSRIKAVSADLHARFSAV 108

Query: 249 WRRYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRL 308
            R Y Y        +  + S            EIH     D + NE  SY          
Sbjct: 109 SRTYHYYIHTGKQPFSRRYS-----------CEIHYPLDFDKM-NEAASY---------- 146

Query: 309 LQKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRV-MCIELV 367
                  L+  K F    KA  +    T C L  AR I +   L+ +   T    C  + 
Sbjct: 147 -------LIGEKDFKCFCKAGADV-KTTFCNLTEARWIPSGDGLSLSSGGTIANWCFVIT 198

Query: 368 ANRFLRRMVRVLVATSI 384
           ANRFLR MVR +V T +
Sbjct: 199 ANRFLRNMVRAVVGTLV 215


>G5J7Y7_CROWT (tr|G5J7Y7) tRNA pseudouridine synthase A OS=Crocosphaera watsonii
           WH 0003 GN=truA PE=3 SV=1
          Length = 285

 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 56/123 (45%), Gaps = 14/123 (11%)

Query: 134 IVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTD 193
           +V+ Y G  F GWQ+QP   TVQ  IE  +          Q+     PI G    AGRTD
Sbjct: 15  LVIQYQGSRFHGWQRQPNQRTVQEDIETAIA---------QVLGYHTPIHG----AGRTD 61

Query: 194 KGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYL 253
            GV A  QV  F  +   + P+   D + H  P  + +     V   +H  FSA WRRY 
Sbjct: 62  AGVHAAAQVAHF-DYVSPIPPQRWADILNHRLPEDILIRGSQGVPATWHARFSALWRRYR 120

Query: 254 YIF 256
           Y F
Sbjct: 121 YSF 123


>H7FX09_9LACO (tr|H7FX09) tRNA pseudouridine synthase A OS=Lactobacillus
           salivarius SMXD51 GN=truA PE=3 SV=1
          Length = 256

 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 68/251 (27%), Positives = 101/251 (40%), Gaps = 48/251 (19%)

Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
           FK+ L+Y G +F G+Q QP   TVQ V+E  +      NK  + KD  + + GS    GR
Sbjct: 5   FKVTLAYDGTNFAGFQAQPNQRTVQFVLEKAI------NKMSK-KDEYITVYGS----GR 53

Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
           TD GV AL QV  F  +   +  + +   +    P    V+    V   FH  ++   +R
Sbjct: 54  TDSGVHALGQVVHF-DFPHPISAKGMLRGLNSMLPLDCEVVDCKIVPNDFHSRYTTHGKR 112

Query: 252 YLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQK 311
           YLY                GEF +  +            L      Y   + K+   +  
Sbjct: 113 YLY------------RVSRGEFVNPFKR-----------LYTGHYKYPLDIEKIKEAMPD 149

Query: 312 LEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVANRF 371
           +EG    Y  F     AS ++       +Y A+  E ++    NDE    +  E   N F
Sbjct: 150 VEGT-HDYSSFV----ASGSQAKSHVRTIYEAKVYEDKV----NDE----IIFEFYGNGF 196

Query: 372 LRRMVRVLVAT 382
           L   VR++VAT
Sbjct: 197 LYNQVRIMVAT 207


>F7QTS2_9LACO (tr|F7QTS2) tRNA pseudouridine synthase A OS=Lactobacillus
           salivarius GJ-24 GN=truA PE=3 SV=1
          Length = 256

 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 68/251 (27%), Positives = 101/251 (40%), Gaps = 48/251 (19%)

Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
           FK+ L+Y G +F G+Q QP   TVQ V+E  +      NK  + KD  + + GS    GR
Sbjct: 5   FKVTLAYDGTNFAGFQAQPNQRTVQFVLEKAI------NKMSK-KDEYITVYGS----GR 53

Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
           TD GV AL QV  F  +   +  + +   +    P    V+    V   FH  ++   +R
Sbjct: 54  TDSGVHALGQVVHF-DFPHPISAKGMLRGLNSMLPLDCEVVDCKIVPNDFHSRYTTHGKR 112

Query: 252 YLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQK 311
           YLY                GEF +  +            L      Y   + K+   +  
Sbjct: 113 YLY------------RVSRGEFVNPFKR-----------LYTGHYKYPLDIEKIKEAMPD 149

Query: 312 LEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVANRF 371
           +EG    Y  F     AS ++       +Y A+  E ++    NDE    +  E   N F
Sbjct: 150 VEGT-HDYSSFV----ASGSQAKSHVRTIYEAKVYEDKV----NDE----IIFEFYGNGF 196

Query: 372 LRRMVRVLVAT 382
           L   VR++VAT
Sbjct: 197 LYNQVRIMVAT 207


>F5VCV6_9LACO (tr|F5VCV6) tRNA pseudouridine synthase A OS=Lactobacillus
           salivarius NIAS840 GN=truA PE=3 SV=1
          Length = 256

 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 68/251 (27%), Positives = 101/251 (40%), Gaps = 48/251 (19%)

Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
           FK+ L+Y G +F G+Q QP   TVQ V+E  +      NK  + KD  + + GS    GR
Sbjct: 5   FKVTLAYDGTNFAGFQAQPNQRTVQFVLEKAI------NKMSK-KDEYITVYGS----GR 53

Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
           TD GV AL QV  F  +   +  + +   +    P    V+    V   FH  ++   +R
Sbjct: 54  TDSGVHALGQVVHF-DFPHPISAKGMLRGLNSMLPLDCEVVDCKIVPNDFHSRYTTHGKR 112

Query: 252 YLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQK 311
           YLY                GEF +  +            L      Y   + K+   +  
Sbjct: 113 YLY------------RVSRGEFVNPFKR-----------LYTGHYKYPLDIEKIKEAMPD 149

Query: 312 LEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVANRF 371
           +EG    Y  F     AS ++       +Y A+  E ++    NDE    +  E   N F
Sbjct: 150 VEGT-HDYSSFV----ASGSQAKSHVRTIYEAKVYEDKV----NDE----IIFEFYGNGF 196

Query: 372 LRRMVRVLVAT 382
           L   VR++VAT
Sbjct: 197 LYNQVRIMVAT 207


>R7FJ93_9CLOT (tr|R7FJ93) tRNA pseudouridine synthase A OS=Clostridium sp.
           CAG:470 GN=BN670_00877 PE=4 SV=1
          Length = 246

 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 98/254 (38%), Gaps = 53/254 (20%)

Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
            K+ + Y G  F+GWQKQP    +Q  IE  +     E             E  +  +GR
Sbjct: 4   IKLTIEYDGKDFNGWQKQPTKLNIQGTIEQAIKIVTGE-------------EVDLMASGR 50

Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
           TD GV A  QV +F T   ++    I  A+       +R+IS  EV   FH   + K + 
Sbjct: 51  TDAGVHAFGQVANFKT-NSNIPIEKIPIALNSNLKKSIRIISAEEVDERFHSRLTCKRKT 109

Query: 252 YLYIFPLTDGGYKDQSSGSGEFFDTL-RNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQ 310
           Y Y+              + EF   + RN E H     D            + K+ +  +
Sbjct: 110 YRYVI------------NNSEFSSAIYRNLETHIPQKLD------------IEKMKQAAK 145

Query: 311 KLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVANR 370
             EG+   +K F    KAS      +   +Y A   E  +P          + IEL  N 
Sbjct: 146 YFEGE-HDFKAF----KASGTSSKSSVRIIYKAVVYE--MP-------NNRIYIELTGNG 191

Query: 371 FLRRMVRVLVATSI 384
           FL  MVR++  T +
Sbjct: 192 FLYNMVRIIAGTLV 205


>D9SRS8_CLOC7 (tr|D9SRS8) tRNA pseudouridine synthase A OS=Clostridium
           cellulovorans (strain ATCC 35296 / DSM 3052 / OCM 3 /
           743B) GN=truA PE=3 SV=1
          Length = 245

 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 66/124 (53%), Gaps = 15/124 (12%)

Query: 132 FKIVLSYHGGSFDGWQKQPGLN-TVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAG 190
           +K+ + Y G ++ GWQK    + T+QS +E  L T VDE             E +V  +G
Sbjct: 4   YKLTIQYDGKNYRGWQKLSDSDKTIQSKLEKVLSTLVDE-------------EVNVIGSG 50

Query: 191 RTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWR 250
           RTD GV A +Q+ +F+T +KD+K +D+    Y   P  + V S  +V   FH  ++AK +
Sbjct: 51  RTDAGVHARKQIANFHT-EKDLKWKDVLKHCYTYLPEDIVVKSCDKVDEKFHARYNAKKK 109

Query: 251 RYLY 254
            Y Y
Sbjct: 110 IYTY 113


>R6GIX4_9BIFI (tr|R6GIX4) tRNA pseudouridine synthase A OS=Bifidobacterium
           bifidum CAG:234 GN=BN549_00040 PE=4 SV=1
          Length = 300

 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 73/272 (26%), Positives = 104/272 (38%), Gaps = 46/272 (16%)

Query: 130 LTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVA 189
           +  +I L+Y GG F GW KQP + TVQ  IE  L T         + D   P+   +TVA
Sbjct: 1   MRLRIDLAYDGGGFFGWAKQPTIRTVQGEIERVLHTIT----RVPVDDPAEPLR--LTVA 54

Query: 190 GRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAA---------------PGKLRVISV 234
           GRTD GV A  QVC       D+    +   + H +               P  + +  V
Sbjct: 55  GRTDTGVHASHQVCHL-----DIGEETLSRCVGHMSVPPTVALKHRLQRMLPADITIHDV 109

Query: 235 SEVSRAFHPNFSAKWRRYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIH-DSSSKDDLEN 293
           +     F   FSA  R Y+Y          D++S   E    LR   +H D+       N
Sbjct: 110 TVAPSGFDARFSALERTYVY-------RVADRAS---EVDPRLRGFVLHLDADLDVAAMN 159

Query: 294 ETKSYMFSVSKVNRLLQKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLA 353
           E  +    +           G         R+ K +     PT   +        R P A
Sbjct: 160 EAAAMTIGLHDFGSFATPNPG-----GTTIREVKTAYWRRIPTRPLVVDGVGERYRTPAA 214

Query: 354 DNDEETRVMCIELVANRFLRRMVRVLVATSIR 385
           ++D    ++C  +VA+ F R MVR LV   I+
Sbjct: 215 ESD----LLCFTIVADAFARNMVRSLVGGCIQ 242


>Q4C146_CROWT (tr|Q4C146) tRNA pseudouridine synthase A OS=Crocosphaera watsonii
           WH 8501 GN=truA PE=3 SV=1
          Length = 285

 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 56/123 (45%), Gaps = 14/123 (11%)

Query: 134 IVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTD 193
           +V+ Y G  F GWQ+QP   TVQ  IE  +          Q+     PI G    AGRTD
Sbjct: 15  LVIQYQGSRFHGWQRQPNQRTVQEDIETAIA---------QVLGYHTPIHG----AGRTD 61

Query: 194 KGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYL 253
            GV A  QV  F  +   + P+   D + H  P  + +     V   +H  FSA WRRY 
Sbjct: 62  AGVHAAAQVAHF-DYVSPIPPQRWADILNHRLPEDILIRGSQGVPATWHARFSALWRRYR 120

Query: 254 YIF 256
           Y F
Sbjct: 121 YSF 123


>F7YYT8_9THEM (tr|F7YYT8) tRNA pseudouridine synthase A OS=Thermotoga thermarum
           DSM 5069 GN=truA PE=3 SV=1
          Length = 260

 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 71/257 (27%), Positives = 105/257 (40%), Gaps = 57/257 (22%)

Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
           F  V+SY G +F G+Q Q  + TVQ VIE  L             +R    + SV  AGR
Sbjct: 4   FAAVISYDGNNFFGFQLQKDVRTVQGVIEQAL-------------ERIFKTKISVVCAGR 50

Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
           TD GV A+ QV +F     D+ P ++++A+    P  + V  V EV + F+P F A  R 
Sbjct: 51  TDTGVHAVGQVIAF-DCPYDIPPENMKNALNANLPDDVYVRKVIEVPKDFNPRFCATRRI 109

Query: 252 YLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETK---SYMFSVSKVNRL 308
           Y Y                           I++  + +    +      Y   V+K+   
Sbjct: 110 YHYF--------------------------IYNGKTPNVFTRKYYWWFPYELDVNKMREA 143

Query: 309 LQKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVA 368
            + LEG+   +K FA   K   NE       +Y  R +  R  L         + I +  
Sbjct: 144 AKYLEGE-HDFKAFA---KTEGNEKSTVRT-IYRIRILRLRKNL---------ILIRVEG 189

Query: 369 NRFLRRMVRVLVATSIR 385
             FLRRMVR +V   ++
Sbjct: 190 RSFLRRMVRNIVGALVK 206


>K7MW02_SOYBN (tr|K7MW02) tRNA pseudouridine synthase OS=Glycine max PE=3 SV=1
          Length = 410

 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 69/145 (47%), Gaps = 11/145 (7%)

Query: 116 ESVASRGRGGRWARLTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQL 175
           E  A  G   R+ R    I  +Y G  + G QK PG  T++  +E  L  +V     +Q 
Sbjct: 40  ECAAGTGTKKRYKRRKVAIFFAYCGVGYQGMQKNPGAKTIEGDLEEVL--YVSGAVPEQ- 96

Query: 176 KDRGLPIEGSVTVAGRTDKGVTALQQVCS--FYTWKKDVKPRDIEDAIYHAAPGKLRVIS 233
            DRG+P       + RTDKGV+A+ QV S  FY     + P  + D +    P ++R+  
Sbjct: 97  -DRGVPKRYDWARSARTDKGVSAVGQVVSGRFY-----IDPPGLVDRLNSNLPSQIRIFG 150

Query: 234 VSEVSRAFHPNFSAKWRRYLYIFPL 258
              V+ +F+       RRY+Y+ P+
Sbjct: 151 YKRVTASFNAKKFCDRRRYVYLIPV 175


>H1DC39_9FUSO (tr|H1DC39) tRNA pseudouridine synthase OS=Fusobacterium
           necrophorum subsp. funduliforme 1_1_36S
           GN=HMPREF9466_03022 PE=3 SV=1
          Length = 132

 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 61/123 (49%), Gaps = 14/123 (11%)

Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
            KI   Y G SF G+Q+QP   TVQ  IE  L   + E             +  +T +GR
Sbjct: 4   IKISYQYDGSSFMGFQRQPNQRTVQGEIEKSLFHILRE-------------KIDLTSSGR 50

Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
           TD+GV A+QQV +F+T   ++    +  A+    P  + ++ V EV   FH  FSAK R 
Sbjct: 51  TDRGVHAIQQVSNFFT-AVNIPSDRLFYALSRNLPEDILLLQVEEVDSEFHARFSAKTRS 109

Query: 252 YLY 254
           Y Y
Sbjct: 110 YRY 112


>A8UHK6_9FLAO (tr|A8UHK6) tRNA pseudouridine synthase A OS=Flavobacteriales
           bacterium ALC-1 GN=truA PE=3 SV=1
          Length = 252

 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 72/255 (28%), Positives = 106/255 (41%), Gaps = 54/255 (21%)

Query: 130 LTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVA 189
           + F I LSY+G  + GWQ QP   +VQ V+E  L T              L  E SV  A
Sbjct: 1   MRFFIELSYNGKEYHGWQNQPNAISVQEVLEKALSTI-------------LKAEVSVMGA 47

Query: 190 GRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKW 249
           GRTD GV A Q    F  ++K+ + +D+   +    P  + V ++ EV    H  F AK 
Sbjct: 48  GRTDAGVHASQMFAHF-DFEKEFEYKDVVYKLNSYLPKDIAVSTIFEVKPDAHARFEAKS 106

Query: 250 RRYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLL 309
           R Y Y           + S S   FD       +D + +  L  + ++ M +  K+    
Sbjct: 107 RTYHY-----------KISTSKNVFD-------YDFAYQVQLPLDVEA-MNTACKI---- 143

Query: 310 QKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVAN 369
                 L  YK F   +K++      T+   Y+    EA      N      +   + A+
Sbjct: 144 ------LFEYKDFQCFSKSN------TDVKTYNCDIKEAFWTQNSNQ-----LIFTITAD 186

Query: 370 RFLRRMVRVLVATSI 384
           RFLR MVR +V T +
Sbjct: 187 RFLRNMVRAIVGTMV 201


>R7AUT6_9FIRM (tr|R7AUT6) tRNA pseudouridine synthase A 1 OS=Firmicutes bacterium
           CAG:534 GN=BN699_02191 PE=4 SV=1
          Length = 256

 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 64/123 (52%), Gaps = 13/123 (10%)

Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
           FK++L Y G  + GWQ+Q    + ++ I+G L   + +   Q ++ +G         +GR
Sbjct: 4   FKLILQYEGTRYQGWQRQ---ESTENTIQGKLEALLTKMTAQPVELQG---------SGR 51

Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
           TD GV A  QV +F+   K + P +I + +    P  + V+SV+EV   FH   +AK + 
Sbjct: 52  TDSGVHAFAQVANFHADTK-MTPEEILEYMNRYLPEDIGVLSVTEVPERFHSRLNAKGKT 110

Query: 252 YLY 254
           Y Y
Sbjct: 111 YCY 113


>A3SYP3_9RHOB (tr|A3SYP3) tRNA pseudouridine synthase A OS=Sulfitobacter sp.
           NAS-14.1 GN=truA PE=3 SV=1
          Length = 262

 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 59/124 (47%), Gaps = 15/124 (12%)

Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
           + + + YHG  F GWQ+Q  L +VQ  IE  L                 P   ++  AGR
Sbjct: 4   YALKIEYHGAPFVGWQRQIDLASVQGAIEDALAKIE-------------PRAHNIAAAGR 50

Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAI-YHAAPGKLRVISVSEVSRAFHPNFSAKWR 250
           TD GV AL QV +    ++D  P  + +AI YH  P  + ++    V   FH  FSA  R
Sbjct: 51  TDAGVHALAQV-AHCDMERDWTPFRLSEAINYHLKPLPIAIVDCVAVDDDFHARFSALER 109

Query: 251 RYLY 254
           RYL+
Sbjct: 110 RYLF 113


>A3SF68_9RHOB (tr|A3SF68) tRNA pseudouridine synthase A OS=Sulfitobacter sp.
           EE-36 GN=truA PE=3 SV=1
          Length = 262

 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 59/124 (47%), Gaps = 15/124 (12%)

Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
           + + + YHG  F GWQ+Q  L +VQ  IE  L                 P   ++  AGR
Sbjct: 4   YALKIEYHGAPFVGWQRQIDLASVQGAIEDALAKIE-------------PRAHNIAAAGR 50

Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAI-YHAAPGKLRVISVSEVSRAFHPNFSAKWR 250
           TD GV AL QV +    ++D  P  + +AI YH  P  + ++    V   FH  FSA  R
Sbjct: 51  TDAGVHALAQV-AHCDMERDWTPFRLSEAINYHLKPLPIAIVDCVAVDDDFHARFSALER 109

Query: 251 RYLY 254
           RYL+
Sbjct: 110 RYLF 113


>A0LIV1_SYNFM (tr|A0LIV1) tRNA pseudouridine synthase A OS=Syntrophobacter
           fumaroxidans (strain DSM 10017 / MPOB) GN=truA PE=3 SV=1
          Length = 261

 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 61/126 (48%), Gaps = 14/126 (11%)

Query: 129 RLTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTV 188
           R  FK++L Y G  + GWQ+Q G+ T+Q V+E  L   +             P+   V  
Sbjct: 9   RKNFKLILEYDGSHYHGWQRQLGVLTIQEVLESRLEVMLQS-----------PV--GVRA 55

Query: 189 AGRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAK 248
           +GRTD GV A  QV +F+   + ++P +I   I    P  + V+     + +FH  FSA 
Sbjct: 56  SGRTDAGVHACGQVVNFHVHTR-LRPEEILRGINSLLPPDIVVLHAEVAAESFHARFSAT 114

Query: 249 WRRYLY 254
            + Y Y
Sbjct: 115 GKTYEY 120


>E4VBQ6_BIFBI (tr|E4VBQ6) tRNA pseudouridine synthase A OS=Bifidobacterium
           bifidum NCIMB 41171 GN=truA PE=3 SV=1
          Length = 304

 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 73/272 (26%), Positives = 104/272 (38%), Gaps = 46/272 (16%)

Query: 130 LTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVA 189
           +  +I L+Y GG F GW KQP + TVQ  IE  L T         + D   P+   +TVA
Sbjct: 5   MRLRIDLAYDGGGFFGWAKQPTIRTVQGEIERVLHTI----TRVPVDDPAEPLR--LTVA 58

Query: 190 GRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAA---------------PGKLRVISV 234
           GRTD GV A  QVC       D+    +   + H +               P  + +  V
Sbjct: 59  GRTDTGVHASHQVCHL-----DIGEETLSRCVGHMSVPPTVALKHRLQRMLPADITIHDV 113

Query: 235 SEVSRAFHPNFSAKWRRYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIH-DSSSKDDLEN 293
           +     F   FSA  R Y+Y          D++S   E    LR   +H D+       N
Sbjct: 114 TVAPSGFDARFSALERTYVY-------RVADRAS---EVDPRLRGFVLHLDADLDVAAMN 163

Query: 294 ETKSYMFSVSKVNRLLQKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLA 353
           E  +    +           G         R+ K +     PT   +        R P A
Sbjct: 164 EAAAMTIGLHDFGSFATPNPG-----GTTIREVKTAYWRRIPTRPLVVDGVGERYRTPAA 218

Query: 354 DNDEETRVMCIELVANRFLRRMVRVLVATSIR 385
           ++D    ++C  +VA+ F R MVR LV   I+
Sbjct: 219 ESD----LLCFTIVADAFARNMVRSLVGGCIQ 246


>E1NE17_9BIFI (tr|E1NE17) tRNA pseudouridine synthase A OS=Bifidobacterium
           dentium JCVIHMP022 GN=truA PE=3 SV=1
          Length = 302

 Score = 67.8 bits (164), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 79/274 (28%), Positives = 111/274 (40%), Gaps = 58/274 (21%)

Query: 130 LTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVA 189
           +  +I L+Y GG F GW KQP   TVQ  IE  L T +       + D G P+   +TVA
Sbjct: 1   MRLRIDLAYDGGGFFGWAKQPDRRTVQGEIERILHTVL----RVPVDDAGEPLR--LTVA 54

Query: 190 GRTDKGVTALQQVCSF---------YTWKKDVKP-RDIEDAIYHAAPGKLRVISVSEVSR 239
           GRTD GV A  QVC                DV P   +   +    P  + +  ++E  +
Sbjct: 55  GRTDTGVHASHQVCHLDVSETILARCVGHMDVPPVVALTRRLQRMLPNDITIHGINEAPQ 114

Query: 240 AFHPNFSAKWRRYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYM 299
            F   FSA  R Y+Y          D+SS   E    +R   +H     DDL+ ET +  
Sbjct: 115 GFDARFSALERTYVYRI-------ADRSS---EIDPRMRGFVLH---VDDDLDLETMN-- 159

Query: 300 FSVSKVNRLLQKLEGKLLSYKMFARDTKASRNEGPPT--ECFLYHARAIEARLPLADND- 356
                        +   ++  +    + A+ N G  T  E    + R I  R PL D + 
Sbjct: 160 -------------QAAAMTIGLHDFGSFATPNPGGTTIREVKTAYWRRIPQR-PLIDGEM 205

Query: 357 ----------EETRVMCIELVANRFLRRMVRVLV 380
                      E+ + C  +VA+ F R MVR LV
Sbjct: 206 TMGERYHTPSMESGLACFTIVADAFARNMVRSLV 239


>Q2II39_ANADE (tr|Q2II39) tRNA pseudouridine synthase A OS=Anaeromyxobacter
           dehalogenans (strain 2CP-C) GN=truA PE=3 SV=1
          Length = 272

 Score = 67.8 bits (164), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 64/127 (50%), Gaps = 15/127 (11%)

Query: 129 RLTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTV 188
           R ++ + L+Y GG F G+Q+QPGL TVQ  +E            + L+  G  +   + V
Sbjct: 3   RRSYALRLAYDGGRFRGFQRQPGLPTVQQALE------------EALERLG--VRAQLHV 48

Query: 189 AGRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAK 248
           A RTD GV AL QV SF + +  + P  +   +    P  + V+  + V  +FH   SA 
Sbjct: 49  AARTDAGVHALAQVVSF-SARAALDPAALRRGLNEGLPEGILVLDAARVGPSFHARGSAA 107

Query: 249 WRRYLYI 255
            R Y+Y+
Sbjct: 108 SRTYVYL 114


>F7ZCI6_ROSLO (tr|F7ZCI6) tRNA pseudouridine synthase A OS=Roseobacter litoralis
           (strain ATCC 49566 / DSM 6996 / JCM 21268 / NBRC 15278 /
           OCh 149) GN=truA PE=3 SV=1
          Length = 275

 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 61/126 (48%), Gaps = 19/126 (15%)

Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
           + + + YHG  F GWQ+Q   +TVQ  IE  LG                P   ++  AGR
Sbjct: 23  YALKVEYHGAPFVGWQRQKEHSTVQGAIEQALGKIA-------------PAPHTIAAAGR 69

Query: 192 TDKGVTALQQV--CSFYTWKKDVKPRDIEDAI-YHAAPGKLRVISVSEVSRAFHPNFSAK 248
           TD GV A+ QV  C      +D  P  + +A+ YH  P  + + + + V   +H  FSA+
Sbjct: 70  TDAGVHAIAQVAHCDLV---RDWDPFRLSEALNYHLKPAPIAITACTVVDADWHARFSAR 126

Query: 249 WRRYLY 254
            R+YL+
Sbjct: 127 QRQYLF 132


>R0EPF5_PEDAC (tr|R0EPF5) tRNA pseudouridine(38-40) synthase, truA OS=Pediococcus
           acidilactici D3 GN=truA PE=4 SV=1
          Length = 248

 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 105/258 (40%), Gaps = 53/258 (20%)

Query: 130 LTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVA 189
           + +KI ++Y G +F G+Q QP   TV+ V++  +      NK  +     +PI GS    
Sbjct: 1   MRYKITMAYDGTNFAGFQAQPNQRTVEGVLKRAV------NKIAKNPQPEIPIFGS---- 50

Query: 190 GRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKW 249
           GRTD GV A  QV  F     ++   ++  A+    P   +V  V  V   FH  F+   
Sbjct: 51  GRTDAGVHAFGQVVHF-DLPIEMTANNMLHALNSILPLDTQVKKVEIVDEDFHARFTTHG 109

Query: 250 RRYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMF--SVSKVNR 307
           +RY Y   L            GEF D  +              N T  + F  S+  + +
Sbjct: 110 KRYQYRMAL------------GEFVDPFK-------------RNYTGHWKFPISIELIQQ 144

Query: 308 LLQKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAI-EARLPLADNDEETRVMCIEL 366
            ++ LEG    +  F      ++N          H R I EA+   A  DE    +  E 
Sbjct: 145 AIKDLEGT-HDFSSFVASGSTAKN----------HVRTIYEAK---AWKDEAQNEIIFEF 190

Query: 367 VANRFLRRMVRVLVATSI 384
             N FL  MVR++VA  +
Sbjct: 191 YGNGFLYNMVRIMVAVLV 208


>G6IRS9_PEDAC (tr|G6IRS9) tRNA pseudouridine synthase A OS=Pediococcus
           acidilactici MA18/5M GN=truA PE=3 SV=1
          Length = 248

 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 105/258 (40%), Gaps = 53/258 (20%)

Query: 130 LTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVA 189
           + +KI ++Y G +F G+Q QP   TV+ V++  +      NK  +     +PI GS    
Sbjct: 1   MRYKITMAYDGTNFAGFQAQPNQRTVEGVLKRAV------NKIAKNPQPEIPIFGS---- 50

Query: 190 GRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKW 249
           GRTD GV A  QV  F     ++   ++  A+    P   +V  V  V   FH  F+   
Sbjct: 51  GRTDAGVHAFGQVVHF-DLPIEMTANNMLHALNSILPLDTQVKKVEIVDEDFHARFTTHG 109

Query: 250 RRYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMF--SVSKVNR 307
           +RY Y   L            GEF D  +              N T  + F  S+  + +
Sbjct: 110 KRYQYRMAL------------GEFVDPFK-------------RNYTGHWKFPISIELIQQ 144

Query: 308 LLQKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAI-EARLPLADNDEETRVMCIEL 366
            ++ LEG    +  F      ++N          H R I EA+   A  DE    +  E 
Sbjct: 145 AIKDLEGT-HDFSSFVASGSTAKN----------HVRTIYEAK---AWKDEAQNEIIFEF 190

Query: 367 VANRFLRRMVRVLVATSI 384
             N FL  MVR++VA  +
Sbjct: 191 YGNGFLYNMVRIMVAVLV 208


>E0NFB7_PEDAC (tr|E0NFB7) tRNA pseudouridine synthase A OS=Pediococcus
           acidilactici DSM 20284 GN=truA PE=3 SV=1
          Length = 248

 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 105/258 (40%), Gaps = 53/258 (20%)

Query: 130 LTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVA 189
           + +KI ++Y G +F G+Q QP   TV+ V++  +      NK  +     +PI GS    
Sbjct: 1   MRYKITMAYDGTNFAGFQAQPNQRTVEGVLKRAV------NKIAKNPQPEIPIFGS---- 50

Query: 190 GRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKW 249
           GRTD GV A  QV  F     ++   ++  A+    P   +V  V  V   FH  F+   
Sbjct: 51  GRTDAGVHAFGQVVHF-DLPIEMTANNMLHALNSILPLDTQVKKVEIVDEDFHARFTTHG 109

Query: 250 RRYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMF--SVSKVNR 307
           +RY Y   L            GEF D  +              N T  + F  S+  + +
Sbjct: 110 KRYQYRMAL------------GEFVDPFK-------------RNYTGHWKFPISIELIQQ 144

Query: 308 LLQKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAI-EARLPLADNDEETRVMCIEL 366
            ++ LEG    +  F      ++N          H R I EA+   A  DE    +  E 
Sbjct: 145 AIKDLEGT-HDFSSFVASGSTAKN----------HVRTIYEAK---AWKDEAQNEIIFEF 190

Query: 367 VANRFLRRMVRVLVATSI 384
             N FL  MVR++VA  +
Sbjct: 191 YGNGFLYNMVRIMVAVLV 208


>D2EKH4_PEDAC (tr|D2EKH4) tRNA pseudouridine synthase A OS=Pediococcus
           acidilactici 7_4 GN=truA PE=3 SV=1
          Length = 248

 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 105/258 (40%), Gaps = 53/258 (20%)

Query: 130 LTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVA 189
           + +KI ++Y G +F G+Q QP   TV+ V++  +      NK  +     +PI GS    
Sbjct: 1   MRYKITMAYDGTNFAGFQAQPNQRTVEGVLKRAV------NKIAKNPQPEIPIFGS---- 50

Query: 190 GRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKW 249
           GRTD GV A  QV  F     ++   ++  A+    P   +V  V  V   FH  F+   
Sbjct: 51  GRTDAGVHAFGQVVHF-DLPIEMTANNMLHALNSILPLDTQVKKVEIVDEDFHARFTTHG 109

Query: 250 RRYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMF--SVSKVNR 307
           +RY Y   L            GEF D  +              N T  + F  S+  + +
Sbjct: 110 KRYQYRMAL------------GEFVDPFK-------------RNYTGHWKFPISIELIQQ 144

Query: 308 LLQKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAI-EARLPLADNDEETRVMCIEL 366
            ++ LEG    +  F      ++N          H R I EA+   A  DE    +  E 
Sbjct: 145 AIKDLEGT-HDFSSFVASGSTAKN----------HVRTIYEAK---AWKDEAQNEIIFEF 190

Query: 367 VANRFLRRMVRVLVATSI 384
             N FL  MVR++VA  +
Sbjct: 191 YGNGFLYNMVRIMVAVLV 208


>F5YEX5_TREAZ (tr|F5YEX5) tRNA pseudouridine synthase A OS=Treponema
           azotonutricium (strain ATCC BAA-888 / DSM 13862 / ZAS-9)
           GN=truA PE=3 SV=1
          Length = 248

 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 61/126 (48%), Gaps = 14/126 (11%)

Query: 133 KIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRT 192
           K++++Y G  F GWQ+Q G  TVQ  IE  LG    E+              ++T +GRT
Sbjct: 6   KLLIAYDGTDFSGWQRQAGRRTVQGEIEKSLGKVHKESV-------------NLTGSGRT 52

Query: 193 DKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRY 252
           D GV A  QV +F T    ++ R    A+    P  +R++  +E    FH  + AK R Y
Sbjct: 53  DAGVHAAGQVANFLTTIDSMEARRFVPALNRILPEDVRILEAAEAGEDFHSRYDAKSRTY 112

Query: 253 LY-IFP 257
            Y I P
Sbjct: 113 RYNIIP 118


>I7L197_METBM (tr|I7L197) tRNA pseudouridine synthase A OS=Methanoculleus
           bourgensis (strain ATCC 43281 / DSM 3045 / OCM 15 / MS2)
           GN=truA PE=3 SV=1
          Length = 268

 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 71/171 (41%), Gaps = 13/171 (7%)

Query: 130 LTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVA 189
           +   I  SY G  F G Q QPGL TV+       G F+   +   L +     E     A
Sbjct: 1   MKLAIRFSYFGDRFFGSQMQPGLRTVE-------GEFIAACRRLGLFEDWR--EAGFVTA 51

Query: 190 GRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKW 249
           GRTD+GV A  QVCSF+T K D   R +   +    P  +   + + V   FHP +SA  
Sbjct: 52  GRTDRGVHARCQVCSFFTEKPDRAIRSLNRVL----PEDIWCTAWAGVPDRFHPRYSAMS 107

Query: 250 RRYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMF 300
           R Y Y F    G        +GEF      +    +  +D   N   + +F
Sbjct: 108 RTYRYFFFPVPGNVALMHEAAGEFVGRHDFSAFARAGGRDPERNVLSARVF 158


>D0MFA8_RHOM4 (tr|D0MFA8) tRNA pseudouridine synthase A OS=Rhodothermus marinus
           (strain ATCC 43812 / DSM 4252 / R-10) GN=truA PE=3 SV=1
          Length = 252

 Score = 67.4 bits (163), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 100/257 (38%), Gaps = 58/257 (22%)

Query: 131 TFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAG 190
           T+++++ Y G  F GWQ Q    ++Q+ +E  L   + E              GS    G
Sbjct: 3   TYRLLIEYDGTDFSGWQIQRNGPSIQAALEEALAVVLRERVRVV---------GS----G 49

Query: 191 RTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWR 250
           RTD GV A  QV  F T  + V P  ++ ++    P  + + SVS     FH  + A+WR
Sbjct: 50  RTDAGVHARGQVAHFRT-DRPVDPERLQGSLNGLLPPSIAIRSVSLAPDDFHARYDARWR 108

Query: 251 RYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSV---SKVNR 307
           RY Y                              ++    LE   + Y+       ++NR
Sbjct: 109 RYHYYV----------------------------ATVPCALERHLRWYLRPAPDFERMNR 140

Query: 308 LLQKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELV 367
               L G    +  F R   A+RN      C +Y AR +         D        E+V
Sbjct: 141 AACDLLGT-HDFTTFCRTQTATRNR----TCTVYLARWVP--------DPRPGDWHFEIV 187

Query: 368 ANRFLRRMVRVLVATSI 384
           A+RFL  MVR +V T I
Sbjct: 188 ADRFLHGMVRAIVGTLI 204


>G8NZ09_GRAMM (tr|G8NZ09) tRNA pseudouridine synthase A OS=Granulicella mallensis
           (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8) GN=truA
           PE=3 SV=1
          Length = 271

 Score = 67.4 bits (163), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 61/123 (49%), Gaps = 14/123 (11%)

Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
           +K+ LSY G  F GWQ QP L TVQ  +   L     E+   Q         GS    GR
Sbjct: 4   WKLTLSYDGTLFHGWQVQPELPTVQGSLALALKYVTGESVLPQ---------GS----GR 50

Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
           TD GV AL QV SF   +  + P +++ A+  A P  +R+++   V  +FH   SA+ + 
Sbjct: 51  TDSGVHALAQVTSF-ALETSIPPANLQRALNRALPPSIRILTAELVDESFHARHSARRKT 109

Query: 252 YLY 254
           Y Y
Sbjct: 110 YEY 112


>R6WGM6_9FIRM (tr|R6WGM6) tRNA pseudouridine synthase A OS=Phascolarctobacterium
           succinatutens CAG:287 GN=BN587_01928 PE=4 SV=1
          Length = 250

 Score = 67.4 bits (163), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 64/125 (51%), Gaps = 16/125 (12%)

Query: 131 TFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTV-A 189
           T K+V++Y G ++ G+QKQ  + TVQ+V+E  L     E           P+   VT  +
Sbjct: 3   TIKLVVAYDGSAYHGFQKQKNVQTVQNVLEEALTMLCGE-----------PV---VTAGS 48

Query: 190 GRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKW 249
           GRTD GV AL Q  +F T    +   ++  A     P  + V+S  E++  FH  FSA+W
Sbjct: 49  GRTDAGVHALAQTVTFTT-NGRIPCANLVRAAASLLPEDIVVVSAEEMTEGFHARFSAQW 107

Query: 250 RRYLY 254
           + Y Y
Sbjct: 108 KTYHY 112


>H1Q0M8_9BACT (tr|H1Q0M8) tRNA pseudouridine synthase A OS=Prevotella micans
           F0438 GN=truA PE=3 SV=1
          Length = 249

 Score = 67.4 bits (163), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 99/256 (38%), Gaps = 53/256 (20%)

Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
           + I LSY G  + GWQ QP   +VQ V+E  L T +  N              S+T AGR
Sbjct: 4   YIIKLSYDGTRYHGWQIQPNGISVQEVLENALTTIMRTNT-------------SITGAGR 50

Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
           TD GV A   V  F      +   D+   +    P  + V +V +V   FH  FSAK R 
Sbjct: 51  TDAGVHARMMVAHF-DLGNSIDEHDLVYKLNRFLPNDISVSAVEQVDNDFHARFSAKSRT 109

Query: 252 YLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQK 311
           Y Y        ++   S        LR                   Y     K+N   + 
Sbjct: 110 YHYYLHTEKDAFQRHYSCE------LR-------------------YKLDFEKMNDAAKL 144

Query: 312 LEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEA---RLPLADNDEETRVMCIELVA 368
           L G+   +K F +    S+     T C       IEA   +LP  +    +R     + A
Sbjct: 145 LLGQ-KDFKCFCKTGADSK----TTIC-----NVIEAAWHQLPADECTLASRWF-FRITA 193

Query: 369 NRFLRRMVRVLVATSI 384
           +RFLR MVR +V T I
Sbjct: 194 DRFLRNMVRAVVGTLI 209


>C7XVU2_9LACO (tr|C7XVU2) tRNA pseudouridine synthase A OS=Lactobacillus
           coleohominis 101-4-CHN GN=truA PE=3 SV=1
          Length = 253

 Score = 67.4 bits (163), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 73/253 (28%), Positives = 104/253 (41%), Gaps = 49/253 (19%)

Query: 130 LTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVA 189
           + +KI  +Y G +F G+Q QP   T    IE  L T V  N+  +  D  + I GS    
Sbjct: 2   IRYKITFAYDGTNFSGFQIQPHKRT----IEQTLKTIV--NRMAKNPDPAISIIGS---- 51

Query: 190 GRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKW 249
           GRTD GV AL QV  F  +   +  + +  A+    P  + V     VS  FH  ++A  
Sbjct: 52  GRTDAGVHALNQVAHF-DFPYHIPEQSMVRALNSQLPLDIIVKKAEIVSNEFHARYNAHR 110

Query: 250 RRYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLL 309
           +RY Y                GEF D  + N  + +  K         Y   ++ +NR  
Sbjct: 111 KRYRY------------RVTQGEFVDPFKRN--YTAHFK---------YPVDIAHMNRAA 147

Query: 310 QKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAI-EARLPLADNDEETRVMCIELVA 368
           Q L G        A  ++A  N            R I EA++   D+D E   +  E V 
Sbjct: 148 QDLVGTHDFTSFVASGSQAKSN-----------IRTIYEAKVYYEDHDHE---VIFEFVG 193

Query: 369 NRFLRRMVRVLVA 381
           N FL   VR++VA
Sbjct: 194 NGFLYNQVRIMVA 206


>D3EQH7_UCYNA (tr|D3EQH7) tRNA pseudouridine synthase A OS=cyanobacterium UCYN-A
           GN=truA PE=3 SV=1
          Length = 281

 Score = 67.4 bits (163), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 70/260 (26%), Positives = 103/260 (39%), Gaps = 69/260 (26%)

Query: 134 IVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTD 193
           +++ Y G  F GWQ+QP   TVQ+ IE  +              + L  + S+  AGRTD
Sbjct: 16  LIIQYSGNRFHGWQRQPYRRTVQADIENTI-------------TKSLGYKVSIHGAGRTD 62

Query: 194 KGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYL 253
            GV A  QV  F  +   + P+ +   +    P  + + +  EVS  +H  FSA+WRRY 
Sbjct: 63  AGVHATGQVAHF-DYAGPIPPKSLARVLNRYLPEDILIRNSKEVSINWHARFSAQWRRYR 121

Query: 254 YIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVS----KVNRLL 309
           Y                     TL  N        +D     KSY +       KV  +L
Sbjct: 122 Y---------------------TLYTN--------NDCNLLIKSYSWHYYRYPLKVKSML 152

Query: 310 QKLEGKLLSYKMFARDTKAS-RN----EGPPTECFLYHARAIEARLPLADNDEETRVMCI 364
             L+  L ++ + A   K S RN    E    EC+                  +   + I
Sbjct: 153 DALKSLLGTHHLTAFRKKGSQRNHSWVEIQDVECY-----------------RKGAFIHI 195

Query: 365 ELVANRFLRRMVRVLVATSI 384
           E+ AN FL  MVR+L+   +
Sbjct: 196 EIQANGFLYGMVRLLMGMLV 215


>B4UEH8_ANASK (tr|B4UEH8) tRNA pseudouridine synthase A OS=Anaeromyxobacter sp.
           (strain K) GN=truA PE=3 SV=1
          Length = 272

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 15/127 (11%)

Query: 129 RLTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTV 188
           R ++ + L+Y GG F G+Q+QPGL TVQ  +E            + L+  GL     + V
Sbjct: 3   RRSYALRLAYDGGRFRGFQRQPGLPTVQQALE------------EALERLGL--RAQLHV 48

Query: 189 AGRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAK 248
           A RTD GV AL QV SF + +  + P  +   +    P  + V+  + V  +FH   SA 
Sbjct: 49  AARTDAGVHALAQVVSF-SARAALDPAALRRGLNEGLPEGILVLDAARVGPSFHARGSAI 107

Query: 249 WRRYLYI 255
            R Y+Y+
Sbjct: 108 ARTYVYL 114


>G8M2D7_CLOCD (tr|G8M2D7) tRNA pseudouridine synthase A OS=Clostridium
           clariflavum (strain DSM 19732 / NBRC 101661 / EBR45)
           GN=truA PE=3 SV=1
          Length = 244

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/252 (24%), Positives = 102/252 (40%), Gaps = 52/252 (20%)

Query: 133 KIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRT 192
           K+ + Y G ++ GWQ Q    TVQ  IE  +     E          + I GS     RT
Sbjct: 5   KLTIEYDGTNYHGWQAQSNAKTVQGTIEKAIHGLTGEK---------IAITGS----SRT 51

Query: 193 DKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRY 252
           D+GV A  QV +F+T   ++ P     A+    P  + +    EVS  FH  + +K ++Y
Sbjct: 52  DQGVHAYGQVANFFT-NSNIPPERFSYALNRMLPDDIVIKKSEEVSMDFHARYCSKGKKY 110

Query: 253 LYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQKL 312
            Y+              +  F   +  N  +  S + DLE           K+NR ++  
Sbjct: 111 RYLIY------------NNSFPSAIYRNRAYHISHRLDLE-----------KMNRAIEFF 147

Query: 313 EGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVANRFL 372
           +G          D  A R  G  ++       ++     ++   +E  ++C E+  + FL
Sbjct: 148 KG--------THDFSAFRATGSSSKT------SVRTIFDVSLTSKED-LICFEVSGDGFL 192

Query: 373 RRMVRVLVATSI 384
             MVR++V T +
Sbjct: 193 YNMVRIMVGTIV 204


>R6MZR5_9CLOT (tr|R6MZR5) tRNA pseudouridine synthase A OS=Clostridium sp.
           CAG:302 GN=BN595_00217 PE=4 SV=1
          Length = 246

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 106/255 (41%), Gaps = 49/255 (19%)

Query: 130 LTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVA 189
           + + I +SY G  F G+QKQP   TVQS +E  L       K              V  +
Sbjct: 1   MRYLITISYDGTDFSGYQKQPKERTVQSELEKALKEINGGKKV------------DVHAS 48

Query: 190 GRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKW 249
           GRTD GV AL Q   F    K + P  +   +    P  + V  V EV   FH  FSA  
Sbjct: 49  GRTDAGVHALNQKVHFDLETK-ITPDKLIRGLNSLLPNDIYVKDVKEVPEDFHARFSAIG 107

Query: 250 RRYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLL 309
           + Y+Y   +            GE ++ L  N ++  + K D           V ++ R +
Sbjct: 108 KEYIYKLNM------------GE-YNPLERNYVYQHNKKLD-----------VIEMERAM 143

Query: 310 QKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVAN 369
           + LEG+  ++K F + T   +++         + R I     + D+ +  ++  +  V  
Sbjct: 144 KYLEGE-HNFKSFTK-TDEEKDD---------YVRTISQTNIIRDSKDINKI-TLSFVGT 191

Query: 370 RFLRRMVRVLVATSI 384
            FLR MVR +V T I
Sbjct: 192 GFLRYMVRNIVGTLI 206


>R7HLS1_9FIRM (tr|R7HLS1) tRNA pseudouridine synthase A OS=Firmicutes bacterium
           CAG:321 GN=BN608_00443 PE=4 SV=1
          Length = 246

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 105/255 (41%), Gaps = 49/255 (19%)

Query: 130 LTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVA 189
           + + I +SY G  F G+QKQP + TVQ  IE  L       K              +  +
Sbjct: 1   MRYLITVSYDGTEFSGYQKQPKMRTVQGEIEKALKEISGGKKI------------DIHAS 48

Query: 190 GRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKW 249
           GRTD GV A+ Q   F     ++    +   +    P  + V  V EVS  FH  FSA  
Sbjct: 49  GRTDAGVHAMAQKIHF-DLDMNITLEKLAKGLNSLLPKDIFVRKVEEVSSDFHARFSAIG 107

Query: 250 RRYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLL 309
           + Y+YI  +            GE ++ L  N ++  ++K D           V ++ R +
Sbjct: 108 KEYIYILNM------------GE-YNPLERNYVYQHNNKLD-----------VVEMERAM 143

Query: 310 QKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVAN 369
           +  EG   ++K F + T   +++         + R I     + D  +  ++  +  V  
Sbjct: 144 KYFEGT-HNFKSFTK-TDEEKDD---------YVRTISQTNLIRDTKDINKITLV-FVGT 191

Query: 370 RFLRRMVRVLVATSI 384
            FLR MVR +V T I
Sbjct: 192 GFLRYMVRNMVGTLI 206


>K0P6D5_9BACT (tr|K0P6D5) tRNA pseudouridine synthase A OS=Cardinium endosymbiont
           cEper1 of Encarsia pergandiella GN=truA PE=3 SV=1
          Length = 253

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 67/142 (47%), Gaps = 21/142 (14%)

Query: 130 LTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVA 189
           + + I +SY G ++ GWQ Q    +VQ V+E  LG         +L    + I GS    
Sbjct: 1   MRYFIYISYFGKAYSGWQIQKNGPSVQQVVETALG---------KLLSTTIAISGS---- 47

Query: 190 GRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIY---HAAPGKLRVISVSEVSRAFHPNFS 246
            RTDKGV ALQQV  F      + P D+ D  Y      P  + + ++  V+   H  F 
Sbjct: 48  SRTDKGVHALQQVAHF----DHIPPIDLADLTYRLNRVLPSDISITAIRPVASDAHARFD 103

Query: 247 AKWRRYLY-IFPLTDGGYKDQS 267
           A +RRY Y I    D  Y++QS
Sbjct: 104 ACYRRYAYTIVTQKDPFYREQS 125


>D1A345_THECD (tr|D1A345) tRNA pseudouridine synthase A OS=Thermomonospora
           curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 /
           NCIMB 10081) GN=truA PE=3 SV=1
          Length = 288

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/207 (29%), Positives = 84/207 (40%), Gaps = 41/207 (19%)

Query: 128 ARLTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVT 187
           A +  ++ + Y G  F GW +QP   TVQ VIE  LG  +  +    L           T
Sbjct: 5   ALVRLRLDIGYDGTDFSGWARQPDRRTVQGVIEEALGRVLRLDPPPAL-----------T 53

Query: 188 VAGRTDKGVTALQQVCSFYTWKKDVKPR---DIEDAIYHAAPGKL----RVISVSEVSRA 240
           VAGRTD GV A  QV        DV  R    + + + H   G L    RV  ++   R 
Sbjct: 54  VAGRTDAGVHARGQVAHV-----DVPERAYAAVSNRLVHRLAGLLPPDVRVWRIAVAPRG 108

Query: 241 FHPNFSAKWRRYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEI--HDSSSKDDLENETKSY 298
           F   FSA WRRY+Y          D+ +G     D LR  E+  H      D  NE  + 
Sbjct: 109 FDARFSALWRRYVYRV-------CDREAG----VDPLRRREVLWHPRPLDLDRMNEAAAR 157

Query: 299 MFSVSKVNRLLQKLEG-----KLLSYK 320
           +          ++ EG     +LL Y+
Sbjct: 158 LLGEHDFAAFCRRREGATTIRRLLRYE 184


>G9ZMT9_9LACO (tr|G9ZMT9) tRNA pseudouridine synthase A OS=Lactobacillus
           parafarraginis F0439 GN=truA PE=3 SV=1
          Length = 268

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 102/261 (39%), Gaps = 48/261 (18%)

Query: 130 LTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVA 189
           + +KI   Y G +F+G+Q+QPG  TV+ V+   +            K    PI   V  +
Sbjct: 6   IRYKITFIYDGTNFNGFQRQPGQRTVEGVLTQKVNVMA--------KHPTPPI--VVYGS 55

Query: 190 GRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKW 249
           GRTD GV AL QV  F  +  D+    I   +    P  + V  V +VS  FH  +    
Sbjct: 56  GRTDSGVHALAQVAHF-DFPFDLPTTAIYRGLNSMLPLDMEVTKVEKVSDHFHARYDVSG 114

Query: 250 RRYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLL 309
           ++YLY   L            GEF +  + N         D++           KVN  L
Sbjct: 115 KKYLYRLAL------------GEFQNPFKRNYTGHWKYPIDMQ-----------KVNHAL 151

Query: 310 QKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVAN 369
           + L G+       A  + A  N            R I +    A+ D     + IE   N
Sbjct: 152 KDLVGEHDFSSFVASGSTAHTN-----------VRVIYSA--TANYDPAANEVSIEFYGN 198

Query: 370 RFLRRMVRVLVATSIREAAAG 390
            FL  MVR++V   + E  +G
Sbjct: 199 GFLYNMVRIMVGVVV-EIGSG 218


>B6Y6M7_9RICK (tr|B6Y6M7) tRNA pseudouridine synthase A OS=Wolbachia endosymbiont
           of Culex quinquefasciatus JHB GN=truA PE=3 SV=1
          Length = 245

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/127 (36%), Positives = 60/127 (47%), Gaps = 16/127 (12%)

Query: 130 LTFKIVLSYHGGSFDGWQKQP-GLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTV 188
           + +KI + Y+G SF GWQKQ    N++Q  IE  +  F  E               S+  
Sbjct: 1   MRYKITIEYNGSSFSGWQKQQHSANSIQETIENAIFNFSGE-------------RVSLHC 47

Query: 189 AGRTDKGVTALQQVCSFYTWKKDVKPRDIEDAI-YHAAPGKLRVISVSEVSRAFHPNFSA 247
            GRTD GV AL QV  F   ++  +   I + I YH     + V+S   V  AFH  FSA
Sbjct: 48  GGRTDTGVHALGQVAHF-NMERQFELYRIRNGINYHLKAIPIVVLSAEAVDDAFHARFSA 106

Query: 248 KWRRYLY 254
           K R Y Y
Sbjct: 107 KKRYYEY 113


>B3QUL0_CHLT3 (tr|B3QUL0) tRNA pseudouridine synthase A OS=Chloroherpeton
           thalassium (strain ATCC 35110 / GB-78) GN=truA PE=3 SV=1
          Length = 265

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 72/264 (27%), Positives = 107/264 (40%), Gaps = 63/264 (23%)

Query: 128 ARLTFKIVLSYHGGSFDGWQKQPG---LNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEG 184
           +R   K++L Y G  F GWQ+QP      T+Q  IE  L   + E           P+E 
Sbjct: 17  SRRNLKMLLEYDGTDFAGWQRQPQNLHQKTIQGEIESVLCRVLQE-----------PVE- 64

Query: 185 SVTVAGRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPN 244
            +  AGRTD GV A  QV +F T +  +    ++ A+    P ++++I + +    F+  
Sbjct: 65  -LIAAGRTDAGVHAKAQVANFLT-ENSLSISRLKHALNGLLPSQIKIIEIEDAPENFNAR 122

Query: 245 FSAKWRRYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSK 304
           F AK R Y Y F LT       S+    F    R                   Y F    
Sbjct: 123 FDAKSRTYRY-FLLT-----RYSALLSRFTGIYR-------------------YDFDARA 157

Query: 305 VNRLLQKLEGKLLSYKMFARDTKASRNEGPPTE---CFLYHARAIEARLPLADNDEETRV 361
           +N   Q++ G+         D  +    G  T+   C +  AR  + +  L         
Sbjct: 158 MNACCQEILGQ--------HDFTSFSKAGSQTKTRICTIEKARWYQRKNGLM-------- 201

Query: 362 MCIELVANRFLRRMVRVLVATSIR 385
             +E+ ANRFL  MVR+LV T I+
Sbjct: 202 --LEIRANRFLHSMVRLLVGTMIK 223


>D3HRK0_LEGLN (tr|D3HRK0) tRNA pseudouridine synthase A OS=Legionella longbeachae
           serogroup 1 (strain NSW150) GN=truA PE=3 SV=1
          Length = 262

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/130 (36%), Positives = 60/130 (46%), Gaps = 20/130 (15%)

Query: 130 LTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVA 189
           +   +VL Y G  + GWQ Q GL+TVQ  +E  L    D           LPI  SV  A
Sbjct: 1   MRIALVLEYDGSKYHGWQAQTGLHTVQQAVENALSKVAD-----------LPI--SVVCA 47

Query: 190 GRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHA---APGKLRVISVSEVSRAFHPNFS 246
           GRTD GV A  QV  F + K+    R I   I+      P  + V    E+S  FH  +S
Sbjct: 48  GRTDTGVHATNQVIHFDSEKQ----RSIRAWIHGVNSFLPKDICVKWGKELSEEFHARYS 103

Query: 247 AKWRRYLYIF 256
           A  RRY Y+ 
Sbjct: 104 ATARRYRYVI 113


>D1RFZ8_LEGLO (tr|D1RFZ8) tRNA pseudouridine synthase A OS=Legionella longbeachae
           D-4968 GN=truA PE=3 SV=1
          Length = 262

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/130 (36%), Positives = 60/130 (46%), Gaps = 20/130 (15%)

Query: 130 LTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVA 189
           +   +VL Y G  + GWQ Q GL+TVQ  +E  L    D           LPI  SV  A
Sbjct: 1   MRIALVLEYDGSKYHGWQAQTGLHTVQQAVENALSKVAD-----------LPI--SVVCA 47

Query: 190 GRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHA---APGKLRVISVSEVSRAFHPNFS 246
           GRTD GV A  QV  F + K+    R I   I+      P  + V    E+S  FH  +S
Sbjct: 48  GRTDTGVHATNQVIHFDSEKQ----RSIRAWIHGVNSFLPKDICVKWGKELSEEFHARYS 103

Query: 247 AKWRRYLYIF 256
           A  RRY Y+ 
Sbjct: 104 ATARRYRYVI 113


>K0IZ82_AMPXN (tr|K0IZ82) tRNA pseudouridine synthase A OS=Amphibacillus xylanus
           (strain ATCC 51415 / DSM 6626 / JCM 7361 / LMG 17667 /
           NBRC 15112 / Ep01) GN=truA PE=3 SV=1
          Length = 248

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 63/120 (52%), Gaps = 13/120 (10%)

Query: 135 VLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDK 194
           ++SY G ++ G+Q QP   T+Q+VIE  L              +G P++  +T +GRTD 
Sbjct: 6   IISYDGSNYSGYQIQPNQLTIQAVIEAALTKM----------HKGEPVK--ITASGRTDA 53

Query: 195 GVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYLY 254
           GV A  QV  F + + D+   + + A+    PG + V+ V +VS  FH  F A  + Y+Y
Sbjct: 54  GVHAYGQVIHFDS-ELDIPESNWKKALNSLLPGDIVVLDVKQVSENFHARFDAIKKTYIY 112


>K8QFQ2_LACRH (tr|K8QFQ2) tRNA pseudouridine synthase A OS=Lactobacillus
           rhamnosus LRHMDP3 GN=truA PE=3 SV=1
          Length = 247

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 106/253 (41%), Gaps = 49/253 (19%)

Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
           +K+ L+Y G +F G+Q QP   TVQ V++  L        T+  K + + ++GS    GR
Sbjct: 4   YKVTLAYDGTNFAGYQVQPKQRTVQGVLQKAL--------TKMAKGQPVHVDGS----GR 51

Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
           TD GV AL QV SF  +  ++    +  A+    P  + ++    V+  FH  +SAK +R
Sbjct: 52  TDSGVHALGQVISF-DYPGNIPAESMLRAMNSLMPLDIEILKAEIVAADFHARYSAKGKR 110

Query: 252 YLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQK 311
           Y Y                       R    + ++  + L      Y   V ++   L+ 
Sbjct: 111 YRY-----------------------RVARGYYTNPFNRLYTGHYPYKLDVKRIEVALKD 147

Query: 312 LEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVANRF 371
           L G    +  FA      +++       +Y A   E   P AD       +  E   N F
Sbjct: 148 LVGT-HDFTSFAASGGVIKDKVRT----IYEATVEED--PAADE------LIFEFYGNGF 194

Query: 372 LRRMVRVLVATSI 384
           L  MVR+LVAT++
Sbjct: 195 LYNMVRILVATAL 207


>K8Q678_LACRH (tr|K8Q678) tRNA pseudouridine synthase A OS=Lactobacillus
           rhamnosus LRHMDP2 GN=truA PE=3 SV=1
          Length = 247

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 106/253 (41%), Gaps = 49/253 (19%)

Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
           +K+ L+Y G +F G+Q QP   TVQ V++  L        T+  K + + ++GS    GR
Sbjct: 4   YKVTLAYDGTNFAGYQVQPKQRTVQGVLQKAL--------TKMAKGQPVHVDGS----GR 51

Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
           TD GV AL QV SF  +  ++    +  A+    P  + ++    V+  FH  +SAK +R
Sbjct: 52  TDSGVHALGQVISF-DYPGNIPAESMLRAMNSLMPLDIEILKAEIVAADFHARYSAKGKR 110

Query: 252 YLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQK 311
           Y Y                       R    + ++  + L      Y   V ++   L+ 
Sbjct: 111 YRY-----------------------RVARGYYTNPFNRLYTGHYPYKLDVKRIEVALKD 147

Query: 312 LEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVANRF 371
           L G    +  FA      +++       +Y A   E   P AD       +  E   N F
Sbjct: 148 LVGT-HDFTSFAASGGVIKDKVRT----IYEATVEED--PAADE------LIFEFYGNGF 194

Query: 372 LRRMVRVLVATSI 384
           L  MVR+LVAT++
Sbjct: 195 LYNMVRILVATAL 207


>G6IZG8_LACRH (tr|G6IZG8) tRNA pseudouridine synthase A OS=Lactobacillus
           rhamnosus R0011 GN=truA PE=3 SV=1
          Length = 247

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 106/253 (41%), Gaps = 49/253 (19%)

Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
           +K+ L+Y G +F G+Q QP   TVQ V++  L        T+  K + + ++GS    GR
Sbjct: 4   YKVTLAYDGTNFAGYQVQPKQRTVQGVLQKAL--------TKMAKGQPVHVDGS----GR 51

Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
           TD GV AL QV SF  +  ++    +  A+    P  + ++    V+  FH  +SAK +R
Sbjct: 52  TDSGVHALGQVISF-DYPGNIPAESMLRAMNSLMPLDIEILKAEIVAADFHARYSAKGKR 110

Query: 252 YLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQK 311
           Y Y                       R    + ++  + L      Y   V ++   L+ 
Sbjct: 111 YRY-----------------------RVARGYYTNPFNRLYTGHYPYKLDVKRIEVALKD 147

Query: 312 LEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVANRF 371
           L G    +  FA      +++       +Y A   E   P AD       +  E   N F
Sbjct: 148 LVGT-HDFTSFAASGGVIKDKVRT----IYEATVEED--PAADE------LIFEFYGNGF 194

Query: 372 LRRMVRVLVATSI 384
           L  MVR+LVAT++
Sbjct: 195 LYNMVRILVATAL 207


>B5QPU8_LACRH (tr|B5QPU8) tRNA pseudouridine synthase A OS=Lactobacillus
           rhamnosus HN001 GN=truA PE=3 SV=1
          Length = 247

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 106/253 (41%), Gaps = 49/253 (19%)

Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
           +K+ L+Y G +F G+Q QP   TVQ V++  L        T+  K + + ++GS    GR
Sbjct: 4   YKVTLAYDGTNFAGYQVQPKQRTVQGVLQKAL--------TKMAKGQPVHVDGS----GR 51

Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
           TD GV AL QV SF  +  ++    +  A+    P  + ++    V+  FH  +SAK +R
Sbjct: 52  TDSGVHALGQVISF-DYPGNIPAESMLRAMNSLMPLDIEILKAEIVAADFHARYSAKGKR 110

Query: 252 YLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQK 311
           Y Y                       R    + ++  + L      Y   V ++   L+ 
Sbjct: 111 YRY-----------------------RVARGYYTNPFNRLYTGHYPYKLDVKRIEVALKD 147

Query: 312 LEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVANRF 371
           L G    +  FA      +++       +Y A   E   P AD       +  E   N F
Sbjct: 148 LVGT-HDFTSFAASGGVIKDKVRT----IYEATVEED--PAADE------LIFEFYGNGF 194

Query: 372 LRRMVRVLVATSI 384
           L  MVR+LVAT++
Sbjct: 195 LYNMVRILVATAL 207


>D9R5X6_CLOSW (tr|D9R5X6) tRNA pseudouridine synthase A OS=Clostridium
           saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC
           2533 / WM1) GN=truA PE=3 SV=1
          Length = 248

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 13/123 (10%)

Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
           +++VL Y G  +DGWQKQ   NT Q+ I+G +     E   +++  + + + GS    GR
Sbjct: 5   YRMVLEYDGSRYDGWQKQG--NTEQT-IQGKI-----EQVLERMTGQAVEVHGS----GR 52

Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
           TD GV AL QV +F+   K +  ++I++ +    P  +RVI++      FH   +A+ + 
Sbjct: 53  TDAGVHALAQVANFHMDGK-MASKEIQEYLNQYLPEDIRVITLEPAKERFHSRLNAQEKT 111

Query: 252 YLY 254
           YLY
Sbjct: 112 YLY 114


>R5BSC4_9BACE (tr|R5BSC4) tRNA pseudouridine synthase A OS=Bacteroides sp.
           CAG:1060 GN=BN459_00483 PE=4 SV=1
          Length = 269

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 67/260 (25%), Positives = 98/260 (37%), Gaps = 50/260 (19%)

Query: 130 LTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVA 189
           + + I+LSY G +F GWQ QP   +VQ V+E  L T + E               SVT A
Sbjct: 1   MRYSIILSYCGAAFHGWQIQPDAQSVQGVLESALSTLLREKV-------------SVTGA 47

Query: 190 GRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKW 249
           GRTD GV A+     F      +   +I   +    P  + V ++SE    FH  F A  
Sbjct: 48  GRTDTGVNAIGYTAHF-DCNSAIDTGNIVYKLNAILPRSVVVHAISEADENFHARFDANE 106

Query: 250 RRYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFS-----VSK 304
           R Y Y                  F   +++  +           E+ SYM++       K
Sbjct: 107 REYTY------------------FLHRVKDPFV-----------ESFSYMYTYPDLDFGK 137

Query: 305 VNRLLQKLEGK--LLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVM 362
           +N   + L G+     ++    D+K S           Y      +R    D        
Sbjct: 138 MNLAAEALCGRHDFRCFEKVGADSKTSVCTIRKALWESYEPTLCASRRTYPDGKAMEDYW 197

Query: 363 CIELVANRFLRRMVRVLVAT 382
              + A+RFLR MVR +V T
Sbjct: 198 KFTICADRFLRNMVRAVVGT 217


>E8LD65_9FIRM (tr|E8LD65) tRNA pseudouridine synthase A OS=Phascolarctobacterium
           succinatutens YIT 12067 GN=truA PE=3 SV=1
          Length = 250

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 61/124 (49%), Gaps = 14/124 (11%)

Query: 131 TFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAG 190
           T K+V++Y G ++ G+QKQ  + TVQ+V+E  L     E          +   GS    G
Sbjct: 3   TIKLVVAYDGSAYHGFQKQKNVQTVQNVLEEALTMLCGEK---------VVTAGS----G 49

Query: 191 RTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWR 250
           RTD GV AL Q  +F T    +   ++  A     P  + V+S  E+   FH  FSA+W+
Sbjct: 50  RTDTGVHALAQTVTFTT-NGRIPCANLVRAAASLLPEDIVVVSAEEMPEGFHARFSARWK 108

Query: 251 RYLY 254
            Y Y
Sbjct: 109 TYHY 112


>B8JBC1_ANAD2 (tr|B8JBC1) tRNA pseudouridine synthase A OS=Anaeromyxobacter
           dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=truA PE=3
           SV=1
          Length = 272

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 64/127 (50%), Gaps = 15/127 (11%)

Query: 129 RLTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTV 188
           R ++ + L+Y GG F G+Q+QPGL TVQ  +E            + L+  G  +   + V
Sbjct: 3   RRSYALRLAYDGGRFRGFQRQPGLPTVQQALE------------EALERLG--VRAQLHV 48

Query: 189 AGRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAK 248
           A RTD GV AL QV SF + +  + P  +   +    P  + V+  + V  +FH   SA 
Sbjct: 49  AARTDAGVHALAQVVSF-SARAALDPVALRGGLNEGLPEGILVLDAARVGPSFHARGSAI 107

Query: 249 WRRYLYI 255
            R Y+Y+
Sbjct: 108 ARTYVYL 114


>R6XMU8_9FIRM (tr|R6XMU8) tRNA pseudouridine synthase A OS=Firmicutes bacterium
           CAG:345 GN=BN617_00665 PE=4 SV=1
          Length = 253

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 61/121 (50%), Gaps = 13/121 (10%)

Query: 134 IVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTD 193
           I+ SY G +F G QKQPGLNTVQ++ E  L    DE             +    ++ R D
Sbjct: 6   IIFSYKGTNFYGSQKQPGLNTVQNLFEDTLSRIYDE-------------KIKFCLSSRLD 52

Query: 194 KGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYL 253
           +GV A+    +F T K+ +K   ++ A+    P  ++VI + EV   F   + +K + YL
Sbjct: 53  RGVHAIFMGGNFKTSKEKMKMDKLKYALNRLFPLYIQVIDIKEVGEDFSARYDSKSKTYL 112

Query: 254 Y 254
           Y
Sbjct: 113 Y 113


>A3JQ02_9RHOB (tr|A3JQ02) tRNA pseudouridine synthase A OS=Rhodobacteraceae
           bacterium HTCC2150 GN=truA PE=3 SV=1
          Length = 265

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 56/123 (45%), Gaps = 13/123 (10%)

Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
           + + + YHG  F GWQ+QP L TVQ  IE  +      N               +T AGR
Sbjct: 4   YALKIEYHGAPFAGWQRQPELQTVQGAIEAAIRKLEAGN-------------AGITAAGR 50

Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
           TD GV A+ QV      K     R  E   +H  P  + +++ ++V   FH  F A  R+
Sbjct: 51  TDAGVHAVGQVAHVDMAKSWDLFRLTEAINHHLKPLPVAIVACAQVDDDFHARFGALERQ 110

Query: 252 YLY 254
           YL+
Sbjct: 111 YLF 113


>N1V5T2_9MICC (tr|N1V5T2) tRNA pseudouridine synthase A OS=Arthrobacter
           crystallopoietes BAB-32 GN=D477_004956 PE=4 SV=1
          Length = 309

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 62/152 (40%), Gaps = 40/152 (26%)

Query: 130 LTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVA 189
           L  ++ L+Y GG+F GW  QPGL TVQ  +E  L T V             P+   +TVA
Sbjct: 16  LRVRMDLAYDGGAFSGWATQPGLLTVQGAVEEGLATLVRR-----------PVR--LTVA 62

Query: 190 GRTDKGVTALQQVCSFYT----WKKDVKPRDIEDA-----------------------IY 222
           GRTD GV A  QV  F      W+   + RDI+ A                        Y
Sbjct: 63  GRTDAGVHARGQVVHFDVEPGEWEALARGRDIDPADSLVRRLRGVLAKVLGGRVGAPVPY 122

Query: 223 HAAPGKLRVISVSEVSRAFHPNFSAKWRRYLY 254
               G + V +       F   FSA WRRY Y
Sbjct: 123 RDLAGAIEVHTAGLAPEGFDARFSALWRRYSY 154


>D5RF84_FUSNC (tr|D5RF84) tRNA pseudouridine synthase A OS=Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726 GN=truA PE=3 SV=1
          Length = 247

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/128 (34%), Positives = 61/128 (47%), Gaps = 14/128 (10%)

Query: 128 ARLTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVT 187
            R   KI   Y G S+ G+Q+QP   TVQ  IE  L     E             E ++ 
Sbjct: 4   GRKNIKIEFRYDGSSYYGFQRQPNKITVQGEIEKVLRIVTKE-------------EINLI 50

Query: 188 VAGRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSA 247
            AGRTD+GV A  QV +FYT   ++     +  +  A P  + ++SV EV   F+   +A
Sbjct: 51  SAGRTDRGVHANHQVSNFYT-SSNIPIEKYKYLLTRALPNDIDILSVEEVDENFNARHNA 109

Query: 248 KWRRYLYI 255
           K R Y+YI
Sbjct: 110 KMREYIYI 117


>R5FW10_9FIRM (tr|R5FW10) tRNA pseudouridine synthase A OS=Faecalibacterium sp.
           CAG:1138 GN=BN468_00106 PE=4 SV=1
          Length = 246

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 63/125 (50%), Gaps = 14/125 (11%)

Query: 130 LTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVA 189
           + +KIV+ Y+G  F GWQ+Q GL +VQ  +         EN  ++   + +     +T +
Sbjct: 1   MRYKIVVEYNGKDFFGWQRQAGLPSVQEAL---------ENAVEKATGKAV----VMTAS 47

Query: 190 GRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKW 249
           GRTD GV AL QV SF   +  +    I  A+    P  +R+++  E    F+  F AK 
Sbjct: 48  GRTDAGVHALGQVVSF-DLETSIPTEKIPYAVNVFLPNGVRILACEEADSDFNARFDAKR 106

Query: 250 RRYLY 254
           + YLY
Sbjct: 107 KTYLY 111


>B7RLD9_9RHOB (tr|B7RLD9) tRNA pseudouridine synthase A OS=Roseobacter sp. GAI101
           GN=truA PE=3 SV=1
          Length = 256

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 61/124 (49%), Gaps = 15/124 (12%)

Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
           + + + Y+G  + GWQ+Q GL TVQ VIE  L                 P    +  AGR
Sbjct: 4   YALKIEYNGAPYVGWQRQIGLATVQGVIEDALAKVE-------------PRAHKIAAAGR 50

Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAI-YHAAPGKLRVISVSEVSRAFHPNFSAKWR 250
           TD GV AL QV +    ++D  P  + +A+ +H  P  + V+  + V   FH  FSA+ R
Sbjct: 51  TDGGVHALGQV-AHCDMERDWDPFRLSEALNFHMKPNPVAVVDCAPVGPEFHARFSAQER 109

Query: 251 RYLY 254
           RY +
Sbjct: 110 RYQF 113


>J9DNL7_9THEM (tr|J9DNL7) tRNA pseudouridine synthase A OS=Thermotoga sp. EMP
           GN=truA PE=3 SV=1
          Length = 245

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/125 (36%), Positives = 59/125 (47%), Gaps = 14/125 (11%)

Query: 135 VLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDK 194
           V+ Y G +F G+Q QP + TVQ VIE  L     +    Q              AGRTD 
Sbjct: 7   VIEYDGSNFFGYQGQPDVRTVQGVIEDALERIFKQRIYTQ-------------AAGRTDA 53

Query: 195 GVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYLY 254
           GV A  Q+ +F      +   DI++A+    P  + V  V EVS+ FHP F  K R Y Y
Sbjct: 54  GVHANGQLIAFNCPNDRMTTEDIKNAMNANLPDDVYVKEVFEVSKNFHPRFDVKKRIYHY 113

Query: 255 IFPLT 259
            F LT
Sbjct: 114 -FILT 117


>H8G3Y6_9PSEU (tr|H8G3Y6) tRNA pseudouridine synthase A OS=Saccharomonospora
           azurea NA-128 GN=truA PE=3 SV=1
          Length = 306

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 70/168 (41%), Gaps = 41/168 (24%)

Query: 102 NEPGIPAVSDKPEFESVASRGRGGRWARLTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEG 161
           +EP IP+             G GG  ARL  +I L+Y G  F GW +QPG  TVQ V+E 
Sbjct: 8   SEPAIPS-------------GEGG-LARL--RIDLAYDGTDFSGWARQPGRRTVQGVLED 51

Query: 162 PLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKGVTALQQVCSF---------YTWKKDV 212
            L            +  G  + GSV VAGRTD GV A  QV            ++    V
Sbjct: 52  ALSK----------QPPGASLAGSVVVAGRTDAGVHAAGQVVHVDVTRFAGETHSRTTPV 101

Query: 213 KPRDIEDA------IYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYLY 254
            P  + D       +    P  +RV+ VS     F   FSA  R Y Y
Sbjct: 102 SPDGLPDLDRARHRLNRVLPADVRVLRVSRAPAGFDARFSAAKRHYRY 149


>C7T713_LACRG (tr|C7T713) tRNA pseudouridine synthase A OS=Lactobacillus
           rhamnosus (strain ATCC 53103 / GG) GN=truA PE=3 SV=1
          Length = 247

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 106/254 (41%), Gaps = 51/254 (20%)

Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
           +K+ L+Y G +F G+Q QP   TVQ V++  L        T+  K + + ++GS    GR
Sbjct: 4   YKVTLAYDGTNFAGYQVQPKQRTVQGVLQKAL--------TKMAKGQPVHVDGS----GR 51

Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
           TD GV AL QV SF  +  ++    +  A+    P  + ++    V+  FH  +SAK +R
Sbjct: 52  TDSGVHALGQVISF-DYPGNIPAESMLRAMNSLMPLDIEILKAEIVAADFHARYSAKGKR 110

Query: 252 YLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQK 311
           Y Y                       R    + ++  + L      Y   V ++   L+ 
Sbjct: 111 YRY-----------------------RVARGYYTNPFNRLYTGHYPYKLDVKRIEVALKD 147

Query: 312 LEGKLLSYKMFARDTKASRNEGPPTECFLYHARAI-EARLPLADNDEETRVMCIELVANR 370
           L G    +  FA      +++           R I EA +   + D     +  E   N 
Sbjct: 148 LVGT-HDFTSFAASGGVIKDK----------VRTIYEATV---EEDPAANELVFEFYGNG 193

Query: 371 FLRRMVRVLVATSI 384
           FL  MVR+LVAT++
Sbjct: 194 FLYNMVRILVATAL 207


>K0JHB7_BRAPL (tr|K0JHB7) tRNA pseudouridine synthase A OS=Brachyspira pilosicoli
           WesB GN=truA PE=3 SV=1
          Length = 247

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/128 (34%), Positives = 60/128 (46%), Gaps = 13/128 (10%)

Query: 133 KIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRT 192
           KI + Y G  F GWQ QP L TVQ  I   +         Q++  +   I G     GRT
Sbjct: 5   KITIQYDGTDFFGWQIQPNLRTVQGEIYKAV---------QKIYSKKSTIYG----CGRT 51

Query: 193 DKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRY 252
           D GV AL QV +F   K  V    +  A+  A P  +R+I    V  +F+   SA +R Y
Sbjct: 52  DAGVHALGQVANFRVEKMLVPIERVTRALNSALPKDIRIIKSEVVDDSFNARASATFREY 111

Query: 253 LYIFPLTD 260
           +Y+   +D
Sbjct: 112 IYVVQNSD 119


>J5UAZ3_9FIRM (tr|J5UAZ3) tRNA pseudouridine synthase A OS=Eubacteriaceae
           bacterium OBRC8 GN=truA PE=3 SV=1
          Length = 245

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 58/119 (48%), Gaps = 14/119 (11%)

Query: 136 LSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKG 195
           +SY G ++ GWQKQ    ++Q  +E  +     E             +  +  +GRTD G
Sbjct: 8   VSYDGTNYCGWQKQNNAVSIQQTLEKAISNITRE-------------DTELIASGRTDSG 54

Query: 196 VTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYLY 254
           V AL QVC+F T   ++  +    AI    P  +RVI   EV  +F+  FSAK + Y+Y
Sbjct: 55  VHALGQVCNFKT-SSNIPSQKFAYAINSKLPKDIRVIESKEVDFSFNARFSAKKKTYMY 112


>R7I2N6_9CLOT (tr|R7I2N6) tRNA pseudouridine synthase A 2 OS=Clostridium sp.
           CAG:411 GN=BN648_00414 PE=4 SV=1
          Length = 261

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/140 (34%), Positives = 67/140 (47%), Gaps = 16/140 (11%)

Query: 123 RGGRWARLTFKIVLSYHGGSFDGWQKQP--GLNTVQSVIEGPLGTFVDENKTQQLKDRGL 180
           R GR +    ++VL Y G  +DGWQKQ   G NT+Q  +E  L            K  G 
Sbjct: 10  RKGRKSMRNIRLVLEYDGSRYDGWQKQARKGSNTIQDKLESVLE-----------KMEGE 58

Query: 181 PIEGSVTVAGRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRA 240
            IE  V  A RT+ GV A  Q+ +F T   D+K  +I+  +    P  + V+ V EV   
Sbjct: 59  KIE--VIGAARTEAGVHAYAQIANFKT-NTDMKMYEIKHYLNRFLPMDIAVLEVDEVPER 115

Query: 241 FHPNFSAKWRRYLYIFPLTD 260
           FH ++ AK  +Y Y   + D
Sbjct: 116 FHSSYLAKSFKYEYKISMGD 135


>D8ICF0_BRAP9 (tr|D8ICF0) tRNA pseudouridine synthase A OS=Brachyspira pilosicoli
           (strain ATCC BAA-1826 / 95/1000) GN=truA PE=3 SV=1
          Length = 247

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/128 (34%), Positives = 60/128 (46%), Gaps = 13/128 (10%)

Query: 133 KIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRT 192
           KI + Y G  F GWQ QP L TVQ  I   +         Q++  +   I G     GRT
Sbjct: 5   KITIQYDGTDFFGWQIQPNLRTVQGEIYKAV---------QKIYSKKSTIYG----CGRT 51

Query: 193 DKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRY 252
           D GV AL QV +F   K  V    +  A+  A P  +R+I    V  +F+   SA +R Y
Sbjct: 52  DAGVHALGQVANFRVEKMLVPIERVTRALNSALPKDIRIIKSEVVDDSFNARASATFREY 111

Query: 253 LYIFPLTD 260
           +Y+   +D
Sbjct: 112 IYVVQNSD 119


>L0F2E2_BRAPL (tr|L0F2E2) tRNA pseudouridine synthase A OS=Brachyspira pilosicoli
           P43/6/78 GN=truA PE=3 SV=1
          Length = 247

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/128 (34%), Positives = 60/128 (46%), Gaps = 13/128 (10%)

Query: 133 KIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRT 192
           KI + Y G  F GWQ QP L TVQ  I   +         Q++  +   I G     GRT
Sbjct: 5   KITIQYDGTDFFGWQIQPNLRTVQGEIYKAV---------QKIYSKKSTIYG----CGRT 51

Query: 193 DKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRY 252
           D GV AL QV +F   K  V    +  A+  A P  +R+I    V  +F+   SA +R Y
Sbjct: 52  DAGVHALGQVANFRVEKMLVPIERVTRALNSALPKDIRIIKSEVVDDSFNARASATFREY 111

Query: 253 LYIFPLTD 260
           +Y+   +D
Sbjct: 112 IYVVQNSD 119


>J9TSF4_BRAPL (tr|J9TSF4) tRNA pseudouridine synthase A OS=Brachyspira pilosicoli
           B2904 GN=truA PE=3 SV=1
          Length = 247

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/128 (34%), Positives = 60/128 (46%), Gaps = 13/128 (10%)

Query: 133 KIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRT 192
           KI + Y G  F GWQ QP L TVQ  I   +         Q++  +   I G     GRT
Sbjct: 5   KITIQYDGTDFFGWQIQPNLRTVQGEIYKAV---------QKIYSKKSTIYG----CGRT 51

Query: 193 DKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRY 252
           D GV AL QV +F   K  V    +  A+  A P  +R+I    V  +F+   SA +R Y
Sbjct: 52  DAGVHALGQVANFRVEKMLVPIERVTRALNSALPKDIRIIKSEVVDDSFNARASATFREY 111

Query: 253 LYIFPLTD 260
           +Y+   +D
Sbjct: 112 IYVVQNSD 119


>Q4E7X8_9RICK (tr|Q4E7X8) tRNA pseudouridine synthase (Fragment) OS=Wolbachia
           endosymbiont of Drosophila simulans GN=truA PE=3 SV=1
          Length = 188

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/127 (36%), Positives = 63/127 (49%), Gaps = 16/127 (12%)

Query: 130 LTFKIVLSYHGGSFDGWQKQP-GLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTV 188
           + +KI + Y+G SF GWQKQ    N++Q  IE  +  F  E             + ++  
Sbjct: 1   MRYKITVEYNGSSFSGWQKQQHSANSIQEKIENAIFNFSGE-------------KIALYC 47

Query: 189 AGRTDKGVTALQQVCSFYTWKKDVKPRDIEDAI-YHAAPGKLRVISVSEVSRAFHPNFSA 247
            GRTD GV AL QV  F   +K+ +   I +AI YH     + V++   V  AFH  FSA
Sbjct: 48  GGRTDAGVHALGQVAHF-DMEKECELYRIRNAINYHLKSIPIVVLNAEVVDDAFHARFSA 106

Query: 248 KWRRYLY 254
           K R Y Y
Sbjct: 107 KKRYYEY 113


>J8V8U3_FUSNU (tr|J8V8U3) tRNA pseudouridine synthase A OS=Fusobacterium
           nucleatum ChDC F128 GN=truA PE=3 SV=1
          Length = 245

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 61/129 (47%), Gaps = 14/129 (10%)

Query: 128 ARLTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVT 187
            R   KI   Y G S+ G+Q+QP   TVQ  IE  L     E             E ++ 
Sbjct: 2   GRKNIKIEFRYDGSSYYGFQRQPNKITVQGEIEKVLRIVTKE-------------EINLI 48

Query: 188 VAGRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSA 247
            AGRTD+GV A  QV +FYT   ++     +  +  A P  + ++SV EV   F+   +A
Sbjct: 49  SAGRTDRGVHANHQVSNFYT-SSNIPIEKYKYLLTRALPNDIDILSVEEVDENFNARHNA 107

Query: 248 KWRRYLYIF 256
           K R Y+YI 
Sbjct: 108 KMREYVYII 116


>M9WV91_9RICK (tr|M9WV91) tRNA pseudouridine synthase A OS=Wolbachia endosymbiont
           of Drosophila simulans wHa GN=truA PE=4 SV=1
          Length = 245

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/127 (36%), Positives = 63/127 (49%), Gaps = 16/127 (12%)

Query: 130 LTFKIVLSYHGGSFDGWQKQP-GLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTV 188
           + +KI + Y+G SF GWQKQ    N++Q  IE  +  F  E             + ++  
Sbjct: 1   MRYKITVEYNGSSFSGWQKQQHSANSIQEKIENAIFNFSGE-------------KIALYC 47

Query: 189 AGRTDKGVTALQQVCSFYTWKKDVKPRDIEDAI-YHAAPGKLRVISVSEVSRAFHPNFSA 247
            GRTD GV AL QV  F   +K+ +   I +AI YH     + V++   V  AFH  FSA
Sbjct: 48  GGRTDAGVHALGQVAHF-DMEKECELYRIRNAINYHLKSIPIVVLNAEVVDDAFHARFSA 106

Query: 248 KWRRYLY 254
           K R Y Y
Sbjct: 107 KKRYYEY 113


>A3SLU7_9RHOB (tr|A3SLU7) tRNA pseudouridine synthase A OS=Roseovarius
           nubinhibens ISM GN=truA PE=3 SV=1
          Length = 258

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 60/124 (48%), Gaps = 15/124 (12%)

Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
           + + + YHG  F GWQ+Q    +VQ  IE  L                 P   ++  AGR
Sbjct: 4   YALKVEYHGAPFAGWQRQKDQPSVQGAIEAALSALE-------------PGAHTIAAAGR 50

Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAI-YHAAPGKLRVISVSEVSRAFHPNFSAKWR 250
           TD GV AL QV +    ++D  P  + +A+ YH  P  + + + + V+  +H  FSA  R
Sbjct: 51  TDAGVHALGQV-AHCDLRRDWDPFRLSEALNYHLKPAPVAITACAPVAEDWHARFSALER 109

Query: 251 RYLY 254
           RYL+
Sbjct: 110 RYLF 113


>A3V9Z5_9RHOB (tr|A3V9Z5) tRNA pseudouridine synthase A OS=Maritimibacter
           alkaliphilus HTCC2654 GN=truA PE=3 SV=1
          Length = 257

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 63/124 (50%), Gaps = 15/124 (12%)

Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
           + + + Y G  F GWQ+Q    +VQ  +E  LG            +  +P   S+  AGR
Sbjct: 4   YALKIEYDGRPFSGWQRQKDQPSVQGAVEAALGKL----------EADVP---SIAAAGR 50

Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAI-YHAAPGKLRVISVSEVSRAFHPNFSAKWR 250
           TD GV AL QV +    +KD  P  + +A+ YH  P ++ +++ + V   FH  FSA  R
Sbjct: 51  TDAGVHALGQVATC-DLQKDWTPFRLTEALNYHLKPDRVAIVACALVDDGFHARFSAIER 109

Query: 251 RYLY 254
           +YL+
Sbjct: 110 QYLF 113


>R5SMN5_9CLOT (tr|R5SMN5) tRNA pseudouridine synthase A 2 OS=Clostridium sp.
           CAG:75 GN=BN771_01980 PE=4 SV=1
          Length = 291

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 75/278 (26%), Positives = 107/278 (38%), Gaps = 59/278 (21%)

Query: 132 FKIVLSYHGGSFDGWQKQPGL-NTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAG 190
           +K+ + Y G  + GWQKQ    +T+Q  IE  L  ++ E+         + I GS    G
Sbjct: 4   YKLTIQYDGTRYSGWQKQGNTADTIQGKIETVLQKWLKED---------IEIHGS----G 50

Query: 191 RTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWR 250
           RTD GV AL QV +F T      P+ I  A+    P  +R+ SV++V   FH   +AK +
Sbjct: 51  RTDAGVHALCQVANFKTSAALSCPQ-IMTALNQYLPQDVRITSVTQVDPRFHARLNAKQK 109

Query: 251 RYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETK--SYMFSVSKVNRL 308
            Y Y     D G       + E F+        D+     L  +T   S  F  S VN  
Sbjct: 110 HYRYQI---DNG------SAAEVFERKYITRFADTDYFYKLCRQTGHLSATFGDSSVNTD 160

Query: 309 LQKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADND------------ 356
           + +            R+  AS N  PP   +   A    A L   ++D            
Sbjct: 161 ISRPS---------ERNNVASNNTMPPQIIYDLEAMQKAAALLCGEHDFKSFCDNKRMKK 211

Query: 357 ------------EETRVMCIELVANRFLRRMVRVLVAT 382
                        E   M ++   N FL  MVR+L  T
Sbjct: 212 STVRTITNLTIRNENNKMILDFYGNGFLYHMVRILTGT 249


>I1JGM9_SOYBN (tr|I1JGM9) Uncharacterized protein OS=Glycine max PE=4 SV=1
          Length = 548

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 67/139 (48%), Gaps = 11/139 (7%)

Query: 122 GRGGRWARLTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLP 181
           G   R+ R    I  +Y G  + G QK PG  T++  +E  L  +V     +Q  DRG+P
Sbjct: 42  GTKKRYKRRKVAIFFAYCGVGYQGMQKNPGAKTIEGDLEEAL--YVSGAVPEQ--DRGVP 97

Query: 182 IEGSVTVAGRTDKGVTALQQVCS--FYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSR 239
                  + RTDKGV+A+ QV S  FY     + P  + D +    P ++R+     V+ 
Sbjct: 98  KRYDWARSARTDKGVSAVGQVVSGRFY-----IDPPGLVDRLNSNLPSQIRIFGYKRVTA 152

Query: 240 AFHPNFSAKWRRYLYIFPL 258
           +F+       RRY+Y+ P+
Sbjct: 153 SFNAKKFCDRRRYVYLIPV 171


>D6LJQ7_9FUSO (tr|D6LJQ7) tRNA pseudouridine synthase A OS=Fusobacterium sp.
           1_1_41FAA GN=truA PE=3 SV=1
          Length = 246

 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 61/127 (48%), Gaps = 14/127 (11%)

Query: 129 RLTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTV 188
           R   KI   Y G  + G+Q+QP   TVQ  IE  L     E             + ++  
Sbjct: 3   RKNIKIEFRYDGSRYYGFQRQPDKVTVQGEIEKILKIVTKE-------------DINLIS 49

Query: 189 AGRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAK 248
           AGRTD+GV A QQV +FYT   ++     +  +  A P  + ++SV EV + F+    AK
Sbjct: 50  AGRTDRGVHANQQVSNFYT-SSNIPVEKYKYLLTRALPKDIDILSVEEVDKNFNARHDAK 108

Query: 249 WRRYLYI 255
            R Y+YI
Sbjct: 109 MREYIYI 115


>R5TJ48_9CLOT (tr|R5TJ48) tRNA pseudouridine synthase A 2 OS=Clostridium
           hathewayi CAG:224 GN=BN544_01257 PE=4 SV=1
          Length = 250

 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/124 (37%), Positives = 60/124 (48%), Gaps = 15/124 (12%)

Query: 132 FKIVLSYHGGSFDGWQKQPGL-NTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAG 190
           +KIVL Y G  +DGWQKQ    NT+Q  +EG L           LK  G P+E  V  +G
Sbjct: 5   YKIVLQYDGSRYDGWQKQGNTGNTIQGKLEGIL-----------LKLTGRPVE--VHGSG 51

Query: 191 RTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWR 250
           RTD GV AL Q  +F+     +    I        P  + V+SV +V   FH   +A  +
Sbjct: 52  RTDAGVHALAQTANFHA-DTGMTEDQIRAYFNQYLPEDIAVLSVEKVPDKFHSRLNAVQK 110

Query: 251 RYLY 254
            YLY
Sbjct: 111 TYLY 114


>B4V4X1_9ACTO (tr|B4V4X1) tRNA pseudouridine synthase A OS=Streptomyces sp. Mg1
           GN=truA PE=3 SV=1
          Length = 283

 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/134 (38%), Positives = 66/134 (49%), Gaps = 15/134 (11%)

Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
            ++ LSY G  F GW KQ  L TVQ  +E  L T +      +L D   P+E  +TVAGR
Sbjct: 12  VRLDLSYDGKDFSGWAKQRVLRTVQGELESALTTVM------RLPD---PVE--LTVAGR 60

Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAA---PGKLRVISVSEVSRAFHPNFSAK 248
           TD GV A  QV  F    ++V     +  +   A   P  +RV  V+E  + F+  FSA 
Sbjct: 61  TDAGVHARGQVAQFDV-AEEVWAEHHDKLLRRLAGRLPHDVRVWKVAEAPQGFNARFSAI 119

Query: 249 WRRYLYIFPLTDGG 262
           WRRY Y      GG
Sbjct: 120 WRRYAYRVGDHQGG 133


>G2MVS0_9THEO (tr|G2MVS0) tRNA pseudouridine synthase A OS=Thermoanaerobacter
           wiegelii Rt8.B1 GN=truA PE=3 SV=1
          Length = 244

 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 71/254 (27%), Positives = 103/254 (40%), Gaps = 62/254 (24%)

Query: 134 IVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTD 193
           IV+ Y G ++ GWQ Q    TVQ V++  +     E             E ++  A RTD
Sbjct: 6   IVVEYDGTNYHGWQYQENAVTVQEVLQKAIKKVTGE-------------EVNLIGASRTD 52

Query: 194 KGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYL 253
            GV AL QV +F T  K +    +  A+    P  + V+   +V  +FH  +SAK +RY 
Sbjct: 53  TGVHALYQVANFRTNTK-IPAEKLPYALNSVLPDDIVVVQAKDVEDSFHARYSAKRKRYK 111

Query: 254 YI-----FPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRL 308
           YI     FP+                 T+RN   H             SY  S+ K+   
Sbjct: 112 YIILNRKFPM----------------PTMRNYCWH------------ISYPLSIEKMK-- 141

Query: 309 LQKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVA 368
                 K  SY +   D  A +  G      +   R +   L +  N+E    + IE+ A
Sbjct: 142 ------KAASYLIGTHDFSAFKASGSSKTSTI---RTV-YDLTIEKNEE---FINIEIEA 188

Query: 369 NRFLRRMVRVLVAT 382
           N FL  MVR++V T
Sbjct: 189 NGFLYNMVRIIVGT 202


>A4EPB5_9RHOB (tr|A4EPB5) tRNA pseudouridine synthase A OS=Roseobacter sp.
           SK209-2-6 GN=truA PE=3 SV=1
          Length = 255

 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 60/124 (48%), Gaps = 15/124 (12%)

Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
           F + + YHG  F GWQ+Q  L +VQ  IE  L              R  P   ++  AGR
Sbjct: 4   FALKVEYHGKPFAGWQRQKDLPSVQGAIEDAL-------------SRLEPGAHTIAAAGR 50

Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAI-YHAAPGKLRVISVSEVSRAFHPNFSAKWR 250
           TD GV  L QV +    +KD  P  + +A+ YH  P  + ++  + V   +H  FSA  R
Sbjct: 51  TDTGVHGLGQV-AHCDLQKDWDPFRLSEALNYHLKPAPVAILDCAGVDEDWHARFSAIER 109

Query: 251 RYLY 254
           +YL+
Sbjct: 110 QYLF 113


>D3ALA0_9CLOT (tr|D3ALA0) tRNA pseudouridine synthase A OS=Clostridium hathewayi
           DSM 13479 GN=truA PE=3 SV=1
          Length = 404

 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/124 (37%), Positives = 60/124 (48%), Gaps = 15/124 (12%)

Query: 132 FKIVLSYHGGSFDGWQKQPGL-NTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAG 190
           +KIVL Y G  +DGWQKQ    NT+Q  +EG L           LK  G P+E  V  +G
Sbjct: 159 YKIVLQYDGSRYDGWQKQGNTGNTIQGKLEGIL-----------LKLTGRPVE--VHGSG 205

Query: 191 RTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWR 250
           RTD GV AL Q  +F+     +    I        P  + V+SV +V   FH   +A  +
Sbjct: 206 RTDAGVHALAQTANFHA-DTGMTEDQIRAYFNQYLPEDIAVLSVEKVQDKFHSRLNAVQK 264

Query: 251 RYLY 254
            YLY
Sbjct: 265 TYLY 268


>R7N5E4_9FIRM (tr|R7N5E4) tRNA pseudouridine synthase A 1 OS=Firmicutes bacterium
           CAG:95 GN=BN816_02746 PE=4 SV=1
          Length = 259

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/126 (33%), Positives = 64/126 (50%), Gaps = 15/126 (11%)

Query: 132 FKIVLSYHGGSFDGWQKQPGL-NTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAG 190
           FK++L Y G  + GWQ+Q    +T+Q  +EG L            K  G P+E  +  +G
Sbjct: 4   FKMILQYEGTRYKGWQRQESTEHTIQGKLEGIL-----------TKMAGTPVE--IQGSG 50

Query: 191 RTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWR 250
           RTD GV AL QV +F+   + +  ++I + +    P  + VISV E S  FH   +A  +
Sbjct: 51  RTDAGVHALGQVANFHADIR-MSEQEIMNYVNSYLPEDIAVISVKEASERFHSRLNATGK 109

Query: 251 RYLYIF 256
            Y Y+ 
Sbjct: 110 TYCYLL 115


>R9JZ63_9FIRM (tr|R9JZ63) tRNA pseudouridine(38-40) synthase OS=Lachnospiraceae
           bacterium M18-1 GN=C808_01909 PE=4 SV=1
          Length = 245

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 99/261 (37%), Gaps = 55/261 (21%)

Query: 131 TFKIVLSYHGGSFDGWQKQPGLN-TVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVA 189
           T+K+ ++Y G  + GWQ+QP    TVQ  +E  +              +G P+E  V  +
Sbjct: 3   TYKLTIAYDGTRYQGWQRQPDTELTVQGTLERTICAL-----------KGFPVE--VNGS 49

Query: 190 GRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKW 249
           GRTD GV A  Q  S     K VK    ++ +    P  +RVI    V   FH  +SA  
Sbjct: 50  GRTDGGVHAEAQTASIRLPGK-VKEEVFQEELNRMLPEDIRVIGAELVKNGFHARYSAGG 108

Query: 250 RRYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLL 309
           +RY Y                             D+  K D+      + F      + +
Sbjct: 109 KRYEYTI---------------------------DTRDKADVFTRRYCFHFPEKLDIKAM 141

Query: 310 QKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVAN 369
           +     L+    FA  T   RNE   T   +Y  R           +EE   + I    N
Sbjct: 142 KAAAASLVGKHDFAAFT--DRNEDQSTVRNIYDIRI----------EEEGSKVTIIYEGN 189

Query: 370 RFLRRMVRVLVATSIREAAAG 390
            F+  MVR+L  T I EAA G
Sbjct: 190 GFMYHMVRILTGT-ILEAATG 209


>Q5GSK8_WOLTR (tr|Q5GSK8) tRNA pseudouridine synthase A OS=Wolbachia sp. subsp.
           Brugia malayi (strain TRS) GN=truA PE=3 SV=1
          Length = 249

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 59/125 (47%), Gaps = 16/125 (12%)

Query: 132 FKIVLSYHGGSFDGWQKQP-GLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAG 190
           +KI + Y+G SF GWQKQ    N++Q  IE  +  F  E  T             +   G
Sbjct: 7   YKITIEYNGSSFSGWQKQQHSANSIQETIENAIFNFSGEKVT-------------LHCGG 53

Query: 191 RTDKGVTALQQVCSFYTWKKDVKPRDIEDAI-YHAAPGKLRVISVSEVSRAFHPNFSAKW 249
           RTD GV AL QV  F   ++  +   I +AI YH     + V++   V   FH  FSAK 
Sbjct: 54  RTDAGVHALGQVAHF-DMERKFELYKIRNAINYHLKSIPIVVLNAETVDNTFHSRFSAKK 112

Query: 250 RRYLY 254
           R Y Y
Sbjct: 113 RYYEY 117


>L0DDA4_SINAD (tr|L0DDA4) tRNA pseudouridine synthase A OS=Singulisphaera
           acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM
           B-2454 / MOB10) GN=truA PE=3 SV=1
          Length = 255

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 58/125 (46%), Gaps = 14/125 (11%)

Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
            K++LSY G  F GWQ+QP   TVQ  +E  +         Q+L         S    GR
Sbjct: 4   IKLLLSYDGTDFSGWQRQPDRRTVQQTLEEAI---------QRLTGAAAVTNAS----GR 50

Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
           TD GV A+ QV  FYT  +   P     A+    P  +RV +  ++ +AFH     K +R
Sbjct: 51  TDAGVHAIGQVVHFYTVSRHA-PEVFVKALNATLPHDIRVRNAWDMPQAFHSTLDTKSKR 109

Query: 252 YLYIF 256
           Y Y+ 
Sbjct: 110 YRYVI 114


>D1B5U1_THEAS (tr|D1B5U1) tRNA pseudouridine synthase A OS=Thermanaerovibrio
           acidaminovorans (strain ATCC 49978 / DSM 6589 / Su883)
           GN=truA PE=3 SV=1
          Length = 251

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/124 (38%), Positives = 58/124 (46%), Gaps = 22/124 (17%)

Query: 136 LSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKG 195
           +SY G  F G+Q+QP L TVQ  +E  L     E  T              T AGRTD G
Sbjct: 8   VSYVGSCFAGFQRQPNLVTVQGALEESLSALAGEGVT-------------CTGAGRTDAG 54

Query: 196 VTALQQVCSFYTWKKDVKPR-DIED---AIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
           V A  QV  F     D+  R D+E    AI    P  L VI ++EV   FH  F A+WR 
Sbjct: 55  VHARGQVVHF-----DMPSRWDLERLRLAIRARLPRGLEVIRLAEVPGDFHARFDARWRE 109

Query: 252 YLYI 255
           Y Y+
Sbjct: 110 YRYL 113


>N9WV93_CLOIN (tr|N9WV93) tRNA pseudouridine(38-40) synthase OS=Clostridium
           innocuum 2959 GN=HMPREF1094_01771 PE=4 SV=1
          Length = 252

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 62/128 (48%), Gaps = 20/128 (15%)

Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGS---VTV 188
           +K++LSY G ++ GWQ+Q   +++Q  IE  +                  IEGS   +T 
Sbjct: 4   YKVILSYDGTAYGGWQRQTNTHSIQQEIEAAME----------------KIEGSFIRITA 47

Query: 189 AGRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAK 248
           +GRTD  V AL QV  F +  KD+ P +   A+    P  +R+  V  V   FH  F A 
Sbjct: 48  SGRTDAHVHALGQVFHFDS-AKDLAPENWRRALNSLLPHDIRIQDVCLVEDDFHARFHAV 106

Query: 249 WRRYLYIF 256
            +RY Y+ 
Sbjct: 107 SKRYDYLI 114


>K8GN11_9CYAN (tr|K8GN11) tRNA pseudouridine synthase A OS=Oscillatoriales
           cyanobacterium JSC-12 GN=truA PE=3 SV=1
          Length = 283

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 57/123 (46%), Gaps = 14/123 (11%)

Query: 134 IVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTD 193
           +V+ Y G  F GWQ QP   TVQ  IE  L + +           G P+   +  AGRTD
Sbjct: 14  LVIQYLGTHFHGWQWQPNYRTVQDEIEQALHSVI-----------GHPVR--IHGAGRTD 60

Query: 194 KGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYL 253
            GV A  QV  F      V      D +    PG + + + + VS A+H  FSA WRRY 
Sbjct: 61  TGVHAAAQVAHFEA-PGQVPAHRWADILNSRLPGDILIRASASVSSAWHARFSAIWRRYR 119

Query: 254 YIF 256
           Y+ 
Sbjct: 120 YLL 122


>J1F2V9_9LACO (tr|J1F2V9) tRNA pseudouridine synthase A OS=Lactobacillus mali
           KCTC 3596 = DSM 20444 GN=truA PE=3 SV=1
          Length = 250

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 12/121 (9%)

Query: 134 IVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTD 193
           I L+Y G +F G+Q QP   TVQ V+E  +      NK    K+  + I GS    GRTD
Sbjct: 2   ITLAYDGTNFAGFQSQPNQRTVQDVLEKAV------NKMSTAKEF-VHIFGS----GRTD 50

Query: 194 KGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYL 253
            GV A  Q+  F   + D+  + I + +    P  ++V+    VS+ FH  F+A  +RY+
Sbjct: 51  AGVHAFGQIVHF-DLENDIPAQGIVNGLNSMLPLDMQVVDAKIVSKEFHARFTAHGKRYM 109

Query: 254 Y 254
           Y
Sbjct: 110 Y 110


>G1VJ80_9FIRM (tr|G1VJ80) tRNA pseudouridine synthase A OS=Erysipelotrichaceae
           bacterium 2_2_44A GN=truA PE=3 SV=1
          Length = 252

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 62/128 (48%), Gaps = 20/128 (15%)

Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGS---VTV 188
           +K++LSY G ++ GWQ+Q   +++Q  IE  +                  IEGS   +T 
Sbjct: 4   YKVILSYDGTAYGGWQRQTNTHSIQQEIEAAME----------------KIEGSFIRITA 47

Query: 189 AGRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAK 248
           +GRTD  V AL QV  F +  KD+ P +   A+    P  +R+  V  V   FH  F A 
Sbjct: 48  SGRTDAHVHALGQVFHFDS-AKDLAPENWRRALNSLLPHDIRIQDVCLVEDDFHARFHAV 106

Query: 249 WRRYLYIF 256
            +RY Y+ 
Sbjct: 107 SKRYDYLI 114


>K4RJ80_HELHE (tr|K4RJ80) tRNA pseudouridine synthase A OS=Helicobacter
           heilmannii ASB1.4 GN=truA PE=3 SV=1
          Length = 253

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/125 (35%), Positives = 60/125 (48%), Gaps = 15/125 (12%)

Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
           FK+ L+Y G +F G+ KQ G NT++  +E  L              + L I   +T AGR
Sbjct: 4   FKLTLAYDGSAFMGFAKQEGHNTIEGALESAL--------------KRLNISSLITAAGR 49

Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
           TDKGV A+ QV +F        P+ +       AP  +   S+  V   FHP F A  RR
Sbjct: 50  TDKGVHAICQVVAFDAPAFWSAPKLLAHLAPKLAP-YIVCKSLELVDLDFHPRFCAYKRR 108

Query: 252 YLYIF 256
           Y Y+F
Sbjct: 109 YRYLF 113


>G9XDD3_9FIRM (tr|G9XDD3) tRNA pseudouridine synthase A OS=Eubacteriaceae
           bacterium CM5 GN=truA PE=3 SV=1
          Length = 245

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 60/119 (50%), Gaps = 14/119 (11%)

Query: 136 LSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKG 195
           +SY G ++ GWQKQ    ++Q  +E  +     E+           IE  +  +GRTD G
Sbjct: 8   VSYDGTNYCGWQKQNNAVSIQQTLEKAISDITRED-----------IE--LIASGRTDSG 54

Query: 196 VTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYLY 254
           V AL QVC+F T   ++  +    AI    P  +RVI   EV  AF+  F+AK + Y+Y
Sbjct: 55  VHALGQVCNFKTGS-NIPSQKFAYAINSKLPKDIRVIESKEVDFAFNARFTAKKKTYMY 112


>F9EL35_FUSNU (tr|F9EL35) tRNA pseudouridine synthase A OS=Fusobacterium
           nucleatum subsp. animalis ATCC 51191 GN=truA PE=3 SV=1
          Length = 245

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/128 (33%), Positives = 60/128 (46%), Gaps = 14/128 (10%)

Query: 128 ARLTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVT 187
            R   KI   Y G  + G+Q+QP   TVQ  IE  L     E             E ++ 
Sbjct: 2   GRKNIKIEFRYDGSRYYGFQRQPNKITVQGEIEKILRIVTKE-------------EINLI 48

Query: 188 VAGRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSA 247
            AGRTD+GV A  QV +FYT   ++     +  +  A P  + ++SV EV   F+   +A
Sbjct: 49  SAGRTDRGVHAYHQVSNFYT-SSNIPIEKYKYLLTRALPNDIDILSVEEVDENFNARHNA 107

Query: 248 KWRRYLYI 255
           K R Y+YI
Sbjct: 108 KMREYIYI 115


>K4RMQ9_HELHE (tr|K4RMQ9) tRNA pseudouridine synthase OS=Helicobacter heilmannii
           ASB1.4 PE=3 SV=1
          Length = 178

 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/128 (35%), Positives = 61/128 (47%), Gaps = 21/128 (16%)

Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
           FK+ L+Y G +F G+ KQ G NT++  +E  L              + L I   +T AGR
Sbjct: 4   FKLTLAYDGSAFMGFAKQEGHNTIEGALESAL--------------KRLNISSLITAAGR 49

Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVI---SVSEVSRAFHPNFSAK 248
           TDKGV A+ QV +F        P+ +     H AP     I   S+  V   FHP F A 
Sbjct: 50  TDKGVHAICQVVAFDAPAFWSAPKLLA----HLAPKLAPYIVCKSLELVDLDFHPRFCAY 105

Query: 249 WRRYLYIF 256
            RRY Y+F
Sbjct: 106 KRRYRYLF 113


>R5S863_9CLOT (tr|R5S863) tRNA pseudouridine synthase A 1 OS=Clostridium sp.
           CAG:122 GN=BN479_00615 PE=4 SV=1
          Length = 252

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 62/256 (24%), Positives = 102/256 (39%), Gaps = 54/256 (21%)

Query: 132 FKIVLSYHGGSFDGWQKQPGL-NTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAG 190
           FK+ + Y G  F GWQKQ    NT+Q  IE  L     E          + I GS    G
Sbjct: 4   FKLTIQYDGTRFSGWQKQGNTDNTIQGKIENILSKMTGEE---------IEIHGS----G 50

Query: 191 RTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWR 250
           RTD GV A++Q+ +F T    +   D+ D++    P  +R++   +    FH   +AK +
Sbjct: 51  RTDAGVHAIKQIANFKT-NATLSELDVRDSLNKYLPLDIRILDAEKTDNRFHARLNAKGK 109

Query: 251 RYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQ 310
            Y Y                     T+ N E+ +   +  +   T++Y       +    
Sbjct: 110 HYRY---------------------TIDNGEVANVFERKYMTRLTQNYDXXXQNYDIEAM 148

Query: 311 KLEGKLL----SYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIEL 366
           K   KL      +K F  + +  ++            R I + + + ++D    ++ I+ 
Sbjct: 149 KKAAKLFIGEHDFKSFCDNKRMKKST----------IRTI-SDISINNSDG---IITIDF 194

Query: 367 VANRFLRRMVRVLVAT 382
             N FL  MVR+L  T
Sbjct: 195 YGNGFLYHMVRILTGT 210


>F2LWT0_HIPMA (tr|F2LWT0) tRNA pseudouridine synthase A OS=Hippea maritima
           (strain ATCC 700847 / DSM 10411 / MH2) GN=truA PE=3 SV=1
          Length = 241

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 62/128 (48%), Gaps = 16/128 (12%)

Query: 136 LSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKG 195
           ++Y G ++ G+Q QP + TVQ  IE  L              R    +  +  AGRTD G
Sbjct: 7   IAYDGTNYSGFQIQPDVKTVQGEIEKAL-------------KRIFKTDLRINFAGRTDAG 53

Query: 196 VTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYLYI 255
           V A +QV  F     D++   ++ A+    P  +R+ SV  V  +FH  +SAK+R Y+Y 
Sbjct: 54  VHAFEQVIDFPVIA-DIETYSLKKALNSVLPEDIRIKSVKIVDNSFHSRYSAKFREYVYF 112

Query: 256 FPLTDGGY 263
               DG Y
Sbjct: 113 --AFDGEY 118


>E2SNP6_9FIRM (tr|E2SNP6) tRNA pseudouridine synthase A OS=Erysipelotrichaceae
           bacterium 3_1_53 GN=truA PE=3 SV=1
          Length = 253

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 64/129 (49%), Gaps = 22/129 (17%)

Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPL----GTFVDENKTQQLKDRGLPIEGSVT 187
           +K++LSY G ++ GWQ+Q   +++Q  +E  +    G FV                 S+T
Sbjct: 4   YKVILSYDGSAYGGWQRQTNTHSIQQEVEAAIEKVEGRFV-----------------SIT 46

Query: 188 VAGRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSA 247
            +GRTD  V AL QV  F + K  ++P + + A+    P  +R+  V  V  AFH  F A
Sbjct: 47  ASGRTDAHVHALGQVFHFDSVKH-LEPENWKRALNSLLPHDIRIQEVCLVDDAFHARFHA 105

Query: 248 KWRRYLYIF 256
             +RY Y+ 
Sbjct: 106 ISKRYDYLI 114


>A8MGJ9_ALKOO (tr|A8MGJ9) tRNA pseudouridine synthase A OS=Alkaliphilus
           oremlandii (strain OhILAs) GN=truA PE=3 SV=1
          Length = 245

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 63/123 (51%), Gaps = 13/123 (10%)

Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
            K+V+ Y G  +DGWQ+   L   +  I+G +   ++E     +    + I GS    GR
Sbjct: 4   IKLVIEYDGSRYDGWQR---LKDSEQTIQGKIEKVLNE-----MTGSSVEIIGS----GR 51

Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
           TD GV A  Q+ +F T K  +  RDI + + H  P  + V  V EVS  FH  ++A+ ++
Sbjct: 52  TDAGVHAKNQIANFKT-KSSMSIRDIHNYMNHYLPQDIVVKEVKEVSDRFHSRYNAQKKK 110

Query: 252 YLY 254
           Y Y
Sbjct: 111 YTY 113


>Q2LUS6_SYNAS (tr|Q2LUS6) tRNA pseudouridine synthase A OS=Syntrophus
           aciditrophicus (strain SB) GN=truA PE=3 SV=1
          Length = 259

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 61/126 (48%), Gaps = 14/126 (11%)

Query: 129 RLTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTV 188
           R   K+VL Y G ++ GWQ+Q  L T+Q ++E  +     E          + + GS   
Sbjct: 15  RRNIKLVLEYDGTAYRGWQRQGNLPTIQKILEESIARITQEP---------VILHGS--- 62

Query: 189 AGRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAK 248
            GRTD GV AL QV +F T  + +   ++   +    PG + +    +V   FH  +SAK
Sbjct: 63  -GRTDAGVHALNQVANFRTSSR-IPAANLLRGLNSLLPGDIVIRETEDVDEEFHSRYSAK 120

Query: 249 WRRYLY 254
            + YLY
Sbjct: 121 SKSYLY 126


>I0ALT9_IGNAJ (tr|I0ALT9) tRNA pseudouridine synthase A OS=Ignavibacterium album
           (strain DSM 19864 / JCM 16511 / NBRC 101810 / Mat9-16)
           GN=truA PE=3 SV=1
          Length = 242

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 60/124 (48%), Gaps = 14/124 (11%)

Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
           +K++L Y G  + GWQ Q    T+Q  I   +   + E             E ++  +GR
Sbjct: 4   YKLILQYDGSRYSGWQIQENSITIQQEIISAIKIILKE-------------EVNLIGSGR 50

Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
           TD GV AL QV +F T +K++     + A+    P  + V SV +V   FH  F AK R 
Sbjct: 51  TDSGVHALGQVANFRT-EKEIDLYKFQFALNSILPNDISVTSVEKVHENFHSRFDAKKRT 109

Query: 252 YLYI 255
           Y+Y+
Sbjct: 110 YIYL 113


>B9R8H6_RICCO (tr|B9R8H6) Pseudouridylate synthase, putative OS=Ricinus communis
           GN=RCOM_1599840 PE=4 SV=1
          Length = 584

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 63/135 (46%), Gaps = 11/135 (8%)

Query: 126 RWARLTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGS 185
           R+ R    I  +Y G  + G QK PG  T    IEG L   +  +     +DRG P    
Sbjct: 50  RYKRRKMAIFFAYCGVGYQGMQKNPGAKT----IEGDLEEALFHSGAVPEQDRGCPKRYD 105

Query: 186 VTVAGRTDKGVTALQQVCS--FYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHP 243
              + RTDKGV+A+ QV S  FY     V P  + D +    P ++R+     V+ +F+ 
Sbjct: 106 WARSARTDKGVSAVGQVISGRFY-----VDPPGLVDRLNSILPSQIRIFGYKRVTASFNA 160

Query: 244 NFSAKWRRYLYIFPL 258
                 RRY+Y+ P+
Sbjct: 161 KKFCDRRRYVYLIPV 175


>N1WRC8_9FLAO (tr|N1WRC8) tRNA pseudouridine synthase A TruA OS=Psychroflexus
           gondwanensis ACAM 44 GN=pgond44_06755 PE=4 SV=1
          Length = 261

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 64/135 (47%), Gaps = 12/135 (8%)

Query: 126 RWARLTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGS 185
           ++ R  + I L Y G  + GWQKQPG+ TV+ ++   L  F+ EN  Q+ K         
Sbjct: 2   QYKRFYYLIQLQYLGFRYHGWQKQPGVLTVEHMLHKTLN-FILEN--QRFK--------- 49

Query: 186 VTVAGRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNF 245
           V  AGRTD  V+A Q     + ++ ++      D      P  +R +S+ E +  F+   
Sbjct: 50  VLAAGRTDAMVSANQTYIELFVYEDELDLETFLDQFNKNLPQDIRALSIEETTADFNIIQ 109

Query: 246 SAKWRRYLYIFPLTD 260
             K + YLY F L +
Sbjct: 110 HPKIKEYLYFFCLKE 124


>I4M5W1_GARVA (tr|I4M5W1) tRNA pseudouridine synthase A OS=Gardnerella vaginalis
           00703C2mash GN=truA PE=3 SV=1
          Length = 303

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 114/290 (39%), Gaps = 75/290 (25%)

Query: 130 LTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVA 189
           +  ++ L+Y GG F GW KQP L TVQ V+E  L   +  NK     D   P+   ++VA
Sbjct: 1   MRLRLDLAYDGGDFYGWAKQPTLRTVQGVLEDALHKVLRVNK----DDASEPLR--LSVA 54

Query: 190 GRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYH---------------AAPGKLRVISV 234
           GRTD GV A  QVC       DV    +++ + H                 P  + + SV
Sbjct: 55  GRTDTGVHASYQVCHL-----DVSESILQNCVGHTNLTPVKALEYRLCGVLPKDISIHSV 109

Query: 235 SEVSRAFHPNFSAKWRRYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENE 294
           S     F   FSA  R Y+Y                           I D++++ +L+  
Sbjct: 110 SIAPSGFDARFSALDRTYVY--------------------------RISDAANRANLDPR 143

Query: 295 TKSYM------FSVSKVNRLLQKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEA 348
            + ++       +V  +N+    + G L  +  FAR        G    C     +A+  
Sbjct: 144 MRGFVLQLDYDLNVDAMNQAASLIVG-LHDFGSFARPNPG----GTTIRCV---KKAVWN 195

Query: 349 RLPLAD--NDEETRVMCIE-------LVANRFLRRMVRVLVATSIREAAA 389
           R+ +    +    ++ CIE       +VA+ F   MVR LV   ++   A
Sbjct: 196 RVFVGSCLSKSTGKIPCIENGLLEFTIVADAFAHNMVRSLVGACVQVGCA 245