Miyakogusa Predicted Gene
- Lj4g3v3014900.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v3014900.1 Non Chatacterized Hit- tr|E1ZK35|E1ZK35_CHLVA
Putative uncharacterized protein OS=Chlorella
variabil,34.05,1e-17,PseudoU_synth_1,Pseudouridine synthase I, TruA,
alpha/beta domain; no description,Pseudouridine synt,CUFF.52095.1
(390 letters)
Database: trembl
41,451,118 sequences; 13,208,986,710 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
I1KPQ1_SOYBN (tr|I1KPQ1) tRNA pseudouridine synthase OS=Glycine ... 596 e-168
I3SYJ2_MEDTR (tr|I3SYJ2) tRNA pseudouridine synthase OS=Medicago... 540 e-151
G7LIU9_MEDTR (tr|G7LIU9) tRNA pseudouridine synthase OS=Medicago... 539 e-151
K7KRU2_SOYBN (tr|K7KRU2) tRNA pseudouridine synthase OS=Glycine ... 521 e-145
F6HT31_VITVI (tr|F6HT31) tRNA pseudouridine synthase OS=Vitis vi... 474 e-131
B9SDU2_RICCO (tr|B9SDU2) tRNA pseudouridine synthase OS=Ricinus ... 457 e-126
B9N838_POPTR (tr|B9N838) tRNA pseudouridine synthase OS=Populus ... 455 e-125
M5XEM7_PRUPE (tr|M5XEM7) Uncharacterized protein OS=Prunus persi... 437 e-120
R0F4N3_9BRAS (tr|R0F4N3) Uncharacterized protein OS=Capsella rub... 426 e-116
D7MHR9_ARALL (tr|D7MHR9) tRNA pseudouridine synthase OS=Arabidop... 419 e-115
Q8GUL5_ARATH (tr|Q8GUL5) tRNA pseudouridine synthase OS=Arabidop... 414 e-113
I1GVV0_BRADI (tr|I1GVV0) tRNA pseudouridine synthase OS=Brachypo... 409 e-111
M4F387_BRARP (tr|M4F387) tRNA pseudouridine synthase OS=Brassica... 406 e-111
M0VMG5_HORVD (tr|M0VMG5) tRNA pseudouridine synthase OS=Hordeum ... 406 e-111
K3XX61_SETIT (tr|K3XX61) tRNA pseudouridine synthase OS=Setaria ... 401 e-109
I1Q4D2_ORYGL (tr|I1Q4D2) tRNA pseudouridine synthase OS=Oryza gl... 397 e-108
Q654A2_ORYSJ (tr|Q654A2) tRNA pseudouridine synthase OS=Oryza sa... 397 e-108
A3BEB6_ORYSJ (tr|A3BEB6) tRNA pseudouridine synthase OS=Oryza sa... 396 e-108
A2YFW6_ORYSI (tr|A2YFW6) tRNA pseudouridine synthase OS=Oryza sa... 396 e-108
J3MGK7_ORYBR (tr|J3MGK7) tRNA pseudouridine synthase OS=Oryza br... 396 e-108
F4JZU2_ARATH (tr|F4JZU2) tRNA pseudouridine synthase OS=Arabidop... 390 e-106
K7UHY3_MAIZE (tr|K7UHY3) tRNA pseudouridine synthase OS=Zea mays... 390 e-106
B4FNC8_MAIZE (tr|B4FNC8) tRNA pseudouridine synthase OS=Zea mays... 390 e-106
I1GVU9_BRADI (tr|I1GVU9) tRNA pseudouridine synthase OS=Brachypo... 384 e-104
M8B639_AEGTA (tr|M8B639) Protein kinase APK1B, chloroplastic OS=... 369 1e-99
D5AA47_PICSI (tr|D5AA47) tRNA pseudouridine synthase OS=Picea si... 359 1e-96
M0SIE3_MUSAM (tr|M0SIE3) Uncharacterized protein OS=Musa acumina... 341 3e-91
O65241_ARATH (tr|O65241) tRNA pseudouridine synthase OS=Arabidop... 304 3e-80
C5Z7C1_SORBI (tr|C5Z7C1) tRNA pseudouridine synthase OS=Sorghum ... 274 4e-71
D8SHG0_SELML (tr|D8SHG0) tRNA pseudouridine synthase (Fragment) ... 263 8e-68
D8T5Q5_SELML (tr|D8T5Q5) tRNA pseudouridine synthase (Fragment) ... 263 9e-68
M0VMG2_HORVD (tr|M0VMG2) tRNA pseudouridine synthase OS=Hordeum ... 216 9e-54
K4CCE3_SOLLC (tr|K4CCE3) tRNA pseudouridine synthase OS=Solanum ... 211 5e-52
M1AKJ9_SOLTU (tr|M1AKJ9) tRNA pseudouridine synthase OS=Solanum ... 204 3e-50
F2CQJ3_HORVD (tr|F2CQJ3) Predicted protein (Fragment) OS=Hordeum... 199 1e-48
M0VMG4_HORVD (tr|M0VMG4) Uncharacterized protein OS=Hordeum vulg... 197 7e-48
K4CCE2_SOLLC (tr|K4CCE2) Uncharacterized protein OS=Solanum lyco... 167 8e-39
Q0DAC1_ORYSJ (tr|Q0DAC1) Os06g0663100 protein OS=Oryza sativa su... 138 4e-30
B4FE12_MAIZE (tr|B4FE12) Pseudouridylate synthase isoform 1 OS=Z... 128 3e-27
K7UYR6_MAIZE (tr|K7UYR6) Uncharacterized protein OS=Zea mays GN=... 128 4e-27
C1FFR9_MICSR (tr|C1FFR9) Predicted protein OS=Micromonas sp. (st... 124 8e-26
C1N1T3_MICPC (tr|C1N1T3) Predicted protein OS=Micromonas pusilla... 121 5e-25
M0VMG6_HORVD (tr|M0VMG6) Uncharacterized protein OS=Hordeum vulg... 116 1e-23
I0YPD2_9CHLO (tr|I0YPD2) tRNA pseudouridine synthase (Fragment) ... 107 6e-21
B8C9R0_THAPS (tr|B8C9R0) Predicted protein OS=Thalassiosira pseu... 106 1e-20
K0TH32_THAOC (tr|K0TH32) Uncharacterized protein OS=Thalassiosir... 105 4e-20
A4RZ76_OSTLU (tr|A4RZ76) Predicted protein OS=Ostreococcus lucim... 103 1e-19
E1ZK35_CHLVA (tr|E1ZK35) Putative uncharacterized protein OS=Chl... 96 2e-17
L1IR33_GUITH (tr|L1IR33) Uncharacterized protein OS=Guillardia t... 89 3e-15
I6X3U9_PROPF (tr|I6X3U9) tRNA pseudouridine synthase A OS=Propio... 89 4e-15
D1AG36_SEBTE (tr|D1AG36) tRNA pseudouridine synthase A OS=Sebald... 85 6e-14
E8R650_ISOPI (tr|E8R650) tRNA pseudouridine synthase A OS=Isosph... 81 9e-13
C7ND49_LEPBD (tr|C7ND49) tRNA pseudouridine synthase A OS=Leptot... 77 2e-11
K8EEF4_9CHLO (tr|K8EEF4) Uncharacterized protein OS=Bathycoccus ... 76 2e-11
Q40J31_EHRCH (tr|Q40J31) tRNA pseudouridine synthase A OS=Ehrlic... 76 2e-11
D0GPD4_9FUSO (tr|D0GPD4) tRNA pseudouridine synthase A OS=Leptot... 76 3e-11
R5BED7_9BACT (tr|R5BED7) tRNA pseudouridine synthase A OS=Alisti... 75 3e-11
G7V946_THELD (tr|G7V946) tRNA pseudouridine synthase A OS=Thermo... 75 4e-11
F9DIR8_9BACT (tr|F9DIR8) tRNA pseudouridine synthase A OS=Prevot... 75 6e-11
I0TCG1_9BACT (tr|I0TCG1) tRNA pseudouridine synthase A OS=Prevot... 75 6e-11
A7HCM5_ANADF (tr|A7HCM5) tRNA pseudouridine synthase A OS=Anaero... 75 6e-11
R5G6H8_9FIRM (tr|R5G6H8) tRNA pseudouridine synthase A 1 OS=Copr... 74 6e-11
F7XVR9_MIDMI (tr|F7XVR9) tRNA pseudouridine synthase A OS=Midich... 74 1e-10
A8SNL4_9FIRM (tr|A8SNL4) tRNA pseudouridine synthase A OS=Parvim... 74 1e-10
R5IVS9_9FIRM (tr|R5IVS9) tRNA pseudouridine synthase A OS=Firmic... 74 1e-10
D5MF74_9BACT (tr|D5MF74) tRNA pseudouridine synthase A OS=Candid... 74 1e-10
C0QUR7_PERMH (tr|C0QUR7) tRNA pseudouridine synthase A OS=Persep... 73 1e-10
B5JG47_9BACT (tr|B5JG47) tRNA pseudouridine synthase A OS=Verruc... 73 1e-10
B4S8J0_PROA2 (tr|B4S8J0) tRNA pseudouridine synthase A OS=Prosth... 73 2e-10
R7JZF3_9CLOT (tr|R7JZF3) tRNA pseudouridine synthase A 1 OS=Clos... 73 2e-10
D8PHD2_9BACT (tr|D8PHD2) tRNA pseudouridine synthase A OS=Candid... 73 2e-10
E2SG52_9ACTO (tr|E2SG52) tRNA pseudouridine synthase A OS=Aeromi... 73 2e-10
R6HEN3_9FIRM (tr|R6HEN3) tRNA pseudouridine synthase A OS=Phasco... 73 2e-10
F5TCB7_9FIRM (tr|F5TCB7) tRNA pseudouridine synthase OS=Parvimon... 73 2e-10
D5SSD7_PLAL2 (tr|D5SSD7) tRNA pseudouridine synthase A OS=Planct... 72 3e-10
C9MQV8_9BACT (tr|C9MQV8) tRNA pseudouridine synthase A OS=Prevot... 72 3e-10
R7LMS2_9CLOT (tr|R7LMS2) tRNA pseudouridine synthase A OS=Clostr... 72 3e-10
R7AYD0_9FIRM (tr|R7AYD0) tRNA pseudouridine synthase A OS=Firmic... 72 3e-10
A3IQ30_9CHRO (tr|A3IQ30) tRNA pseudouridine synthase A OS=Cyanot... 72 4e-10
R6H4K3_9CLOT (tr|R6H4K3) tRNA pseudouridine synthase A 2 OS=Clos... 72 5e-10
C9N0X3_9FUSO (tr|C9N0X3) tRNA pseudouridine synthase A OS=Leptot... 72 5e-10
D4JDM8_9FIRM (tr|D4JDM8) tRNA pseudouridine synthase A OS=[Eubac... 71 5e-10
A4U350_9PROT (tr|A4U350) tRNA pseudouridine synthase A OS=Magnet... 71 6e-10
M4RDW6_9BIFI (tr|M4RDW6) tRNA pseudouridine synthase A OS=Bifido... 71 8e-10
D1C2N5_SPHTD (tr|D1C2N5) tRNA pseudouridine synthase A OS=Sphaer... 71 8e-10
R7JJD5_9BACT (tr|R7JJD5) tRNA pseudouridine synthase A OS=Alisti... 71 8e-10
I7JAI4_9RICK (tr|I7JAI4) tRNA pseudouridine synthase A OS=Wolbac... 71 9e-10
G2SIB1_RHOMR (tr|G2SIB1) tRNA pseudouridine synthase A OS=Rhodot... 71 9e-10
G9PW72_9BACT (tr|G9PW72) tRNA pseudouridine synthase A OS=Synerg... 70 1e-09
C9R8G0_AMMDK (tr|C9R8G0) tRNA pseudouridine synthase A OS=Ammoni... 70 1e-09
F2JSF8_CELLD (tr|F2JSF8) tRNA pseudouridine synthase A OS=Cellul... 70 1e-09
B0MSW4_9BACT (tr|B0MSW4) tRNA pseudouridine synthase A OS=Alisti... 70 1e-09
R6GWK3_9FIRM (tr|R6GWK3) tRNA pseudouridine synthase A OS=Firmic... 70 1e-09
E3H678_ILYPC (tr|E3H678) tRNA pseudouridine synthase A OS=Ilyoba... 70 1e-09
I3DGM8_9FUSO (tr|I3DGM8) tRNA pseudouridine synthase A OS=Fusoba... 70 1e-09
B1WQT7_CYAA5 (tr|B1WQT7) tRNA pseudouridine synthase A OS=Cyanot... 70 1e-09
G6GPE9_9CHRO (tr|G6GPE9) tRNA pseudouridine synthase A OS=Cyanot... 70 1e-09
E1KTU2_9BACT (tr|E1KTU2) tRNA pseudouridine synthase A OS=Prevot... 70 1e-09
E7ACU3_HELFC (tr|E7ACU3) tRNA pseudouridine synthase A OS=Helico... 70 1e-09
B3QNY5_CHLP8 (tr|B3QNY5) tRNA pseudouridine synthase A OS=Chloro... 70 2e-09
A6C4N8_9PLAN (tr|A6C4N8) tRNA pseudouridine synthase A OS=Planct... 70 2e-09
F0RSJ5_SPHGB (tr|F0RSJ5) tRNA pseudouridine synthase A OS=Sphaer... 70 2e-09
F9PQE1_9FIRM (tr|F9PQE1) tRNA pseudouridine synthase A OS=Parvim... 70 2e-09
R5TDT0_9CLOT (tr|R5TDT0) tRNA pseudouridine synthase A OS=Clostr... 70 2e-09
I3YRA3_ALIFI (tr|I3YRA3) tRNA pseudouridine synthase A OS=Alisti... 69 2e-09
L8DKP4_9NOCA (tr|L8DKP4) tRNA pseudouridine synthase A OS=Rhodoc... 69 2e-09
I4EJ07_9CHLR (tr|I4EJ07) tRNA pseudouridine synthase A OS=Nitrol... 69 2e-09
E4MD25_9BACT (tr|E4MD25) tRNA pseudouridine synthase A OS=Alisti... 69 2e-09
B6B8U3_9RHOB (tr|B6B8U3) tRNA pseudouridine synthase A OS=Rhodob... 69 2e-09
R5XB99_9CLOT (tr|R5XB99) tRNA pseudouridine synthase A 1 OS=Clos... 69 3e-09
M5J7N7_9LACO (tr|M5J7N7) tRNA pseudouridine synthase OS=Lactobac... 69 3e-09
K9EWN2_9CYAN (tr|K9EWN2) tRNA pseudouridine synthase A OS=Leptol... 69 3e-09
J9GBR9_9ZZZZ (tr|J9GBR9) tRNA pseudouridine synthase A (Fragment... 69 3e-09
G2ED72_9FLAO (tr|G2ED72) tRNA pseudouridine synthase A OS=Bizion... 69 3e-09
E3ERA5_BIFBS (tr|E3ERA5) tRNA pseudouridine synthase A OS=Bifido... 69 3e-09
R5UF28_9BACT (tr|R5UF28) tRNA pseudouridine synthase A OS=Alisti... 69 3e-09
I4ZAV1_9BACT (tr|I4ZAV1) tRNA pseudouridine synthase A OS=Prevot... 69 3e-09
D1XYC0_9BACT (tr|D1XYC0) tRNA pseudouridine synthase A OS=Prevot... 69 3e-09
H1BNT2_9FIRM (tr|H1BNT2) tRNA pseudouridine synthase A OS=Eubact... 69 3e-09
D6HS44_9FIRM (tr|D6HS44) tRNA pseudouridine synthase A OS=Erysip... 69 3e-09
N1ZLC8_9LACO (tr|N1ZLC8) tRNA pseudouridine synthase A OS=Lactob... 69 3e-09
F2MKK7_LACCD (tr|F2MKK7) tRNA pseudouridine synthase A OS=Lactob... 69 3e-09
F2MC17_LACCC (tr|F2MC17) tRNA pseudouridine synthase A OS=Lactob... 69 3e-09
D8GCI2_LACCZ (tr|D8GCI2) tRNA pseudouridine synthase A OS=Lactob... 69 3e-09
B3EQM8_CHLPB (tr|B3EQM8) tRNA pseudouridine synthase A OS=Chloro... 69 3e-09
R8ZUA2_9LEPT (tr|R8ZUA2) tRNA pseudouridine(38-40) synthase OS=L... 69 4e-09
D5ARE1_RHOCB (tr|D5ARE1) tRNA pseudouridine synthase A OS=Rhodob... 69 4e-09
J4UAW8_9FIRM (tr|J4UAW8) tRNA pseudouridine synthase A OS=Eubact... 69 4e-09
D2R418_PIRSD (tr|D2R418) tRNA pseudouridine synthase A OS=Pirell... 69 4e-09
I0FBE1_BORCA (tr|I0FBE1) tRNA pseudouridine synthase A OS=Borrel... 69 4e-09
E8WYA8_ACISM (tr|E8WYA8) tRNA pseudouridine synthase A OS=Acidob... 69 4e-09
C1DWJ7_SULAA (tr|C1DWJ7) tRNA pseudouridine synthase A OS=Sulfur... 69 4e-09
K6R823_LACCA (tr|K6R823) tRNA pseudouridine synthase A OS=Lactob... 68 5e-09
E4NZ31_BIFBP (tr|E4NZ31) tRNA pseudouridine synthase A OS=Bifido... 68 5e-09
K2IRF8_BIFBI (tr|K2IRF8) tRNA pseudouridine synthase A OS=Bifido... 68 5e-09
E0QJU7_9FIRM (tr|E0QJU7) tRNA pseudouridine synthase A OS=Eubact... 68 5e-09
E3GGZ0_EUBLK (tr|E3GGZ0) tRNA pseudouridine synthase A OS=Eubact... 68 5e-09
D8IMD1_LACSC (tr|D8IMD1) tRNA pseudouridine synthase A OS=Lactob... 68 5e-09
C7TM62_LACRL (tr|C7TM62) tRNA pseudouridine synthase A OS=Lactob... 68 5e-09
G7UYT6_LACRH (tr|G7UYT6) tRNA pseudouridine synthase A OS=Lactob... 68 5e-09
E1JMM5_9LACO (tr|E1JMM5) tRNA pseudouridine synthase A OS=Lactob... 68 5e-09
R5LA20_9SPIR (tr|R5LA20) tRNA pseudouridine synthase A OS=Brachy... 68 5e-09
C2EHF2_9LACO (tr|C2EHF2) tRNA pseudouridine synthase A OS=Lactob... 68 5e-09
E7NVA1_TREPH (tr|E7NVA1) tRNA pseudouridine synthase A OS=Trepon... 68 6e-09
I3WJN9_BIFBI (tr|I3WJN9) tRNA pseudouridine synthase A OS=Bifido... 68 6e-09
J4VU16_9FUSO (tr|J4VU16) tRNA pseudouridine synthase A OS=Fusoba... 68 6e-09
E5BNB6_9FUSO (tr|E5BNB6) tRNA pseudouridine synthase A OS=Fusoba... 68 6e-09
F2KYJ5_PREDF (tr|F2KYJ5) tRNA pseudouridine synthase A OS=Prevot... 68 6e-09
G5J7Y7_CROWT (tr|G5J7Y7) tRNA pseudouridine synthase A OS=Crocos... 68 6e-09
H7FX09_9LACO (tr|H7FX09) tRNA pseudouridine synthase A OS=Lactob... 68 6e-09
F7QTS2_9LACO (tr|F7QTS2) tRNA pseudouridine synthase A OS=Lactob... 68 6e-09
F5VCV6_9LACO (tr|F5VCV6) tRNA pseudouridine synthase A OS=Lactob... 68 6e-09
R7FJ93_9CLOT (tr|R7FJ93) tRNA pseudouridine synthase A OS=Clostr... 68 6e-09
D9SRS8_CLOC7 (tr|D9SRS8) tRNA pseudouridine synthase A OS=Clostr... 68 6e-09
R6GIX4_9BIFI (tr|R6GIX4) tRNA pseudouridine synthase A OS=Bifido... 68 6e-09
Q4C146_CROWT (tr|Q4C146) tRNA pseudouridine synthase A OS=Crocos... 68 6e-09
F7YYT8_9THEM (tr|F7YYT8) tRNA pseudouridine synthase A OS=Thermo... 68 6e-09
K7MW02_SOYBN (tr|K7MW02) tRNA pseudouridine synthase OS=Glycine ... 68 6e-09
H1DC39_9FUSO (tr|H1DC39) tRNA pseudouridine synthase OS=Fusobact... 68 6e-09
A8UHK6_9FLAO (tr|A8UHK6) tRNA pseudouridine synthase A OS=Flavob... 68 7e-09
R7AUT6_9FIRM (tr|R7AUT6) tRNA pseudouridine synthase A 1 OS=Firm... 68 7e-09
A3SYP3_9RHOB (tr|A3SYP3) tRNA pseudouridine synthase A OS=Sulfit... 68 7e-09
A3SF68_9RHOB (tr|A3SF68) tRNA pseudouridine synthase A OS=Sulfit... 68 7e-09
A0LIV1_SYNFM (tr|A0LIV1) tRNA pseudouridine synthase A OS=Syntro... 68 7e-09
E4VBQ6_BIFBI (tr|E4VBQ6) tRNA pseudouridine synthase A OS=Bifido... 68 7e-09
E1NE17_9BIFI (tr|E1NE17) tRNA pseudouridine synthase A OS=Bifido... 68 8e-09
Q2II39_ANADE (tr|Q2II39) tRNA pseudouridine synthase A OS=Anaero... 68 8e-09
F7ZCI6_ROSLO (tr|F7ZCI6) tRNA pseudouridine synthase A OS=Roseob... 67 8e-09
R0EPF5_PEDAC (tr|R0EPF5) tRNA pseudouridine(38-40) synthase, tru... 67 8e-09
G6IRS9_PEDAC (tr|G6IRS9) tRNA pseudouridine synthase A OS=Pedioc... 67 8e-09
E0NFB7_PEDAC (tr|E0NFB7) tRNA pseudouridine synthase A OS=Pedioc... 67 8e-09
D2EKH4_PEDAC (tr|D2EKH4) tRNA pseudouridine synthase A OS=Pedioc... 67 8e-09
F5YEX5_TREAZ (tr|F5YEX5) tRNA pseudouridine synthase A OS=Trepon... 67 8e-09
I7L197_METBM (tr|I7L197) tRNA pseudouridine synthase A OS=Methan... 67 8e-09
D0MFA8_RHOM4 (tr|D0MFA8) tRNA pseudouridine synthase A OS=Rhodot... 67 9e-09
G8NZ09_GRAMM (tr|G8NZ09) tRNA pseudouridine synthase A OS=Granul... 67 9e-09
R6WGM6_9FIRM (tr|R6WGM6) tRNA pseudouridine synthase A OS=Phasco... 67 9e-09
H1Q0M8_9BACT (tr|H1Q0M8) tRNA pseudouridine synthase A OS=Prevot... 67 9e-09
C7XVU2_9LACO (tr|C7XVU2) tRNA pseudouridine synthase A OS=Lactob... 67 9e-09
D3EQH7_UCYNA (tr|D3EQH7) tRNA pseudouridine synthase A OS=cyanob... 67 9e-09
B4UEH8_ANASK (tr|B4UEH8) tRNA pseudouridine synthase A OS=Anaero... 67 1e-08
G8M2D7_CLOCD (tr|G8M2D7) tRNA pseudouridine synthase A OS=Clostr... 67 1e-08
R6MZR5_9CLOT (tr|R6MZR5) tRNA pseudouridine synthase A OS=Clostr... 67 1e-08
R7HLS1_9FIRM (tr|R7HLS1) tRNA pseudouridine synthase A OS=Firmic... 67 1e-08
K0P6D5_9BACT (tr|K0P6D5) tRNA pseudouridine synthase A OS=Cardin... 67 1e-08
D1A345_THECD (tr|D1A345) tRNA pseudouridine synthase A OS=Thermo... 67 1e-08
G9ZMT9_9LACO (tr|G9ZMT9) tRNA pseudouridine synthase A OS=Lactob... 67 1e-08
B6Y6M7_9RICK (tr|B6Y6M7) tRNA pseudouridine synthase A OS=Wolbac... 67 1e-08
B3QUL0_CHLT3 (tr|B3QUL0) tRNA pseudouridine synthase A OS=Chloro... 67 1e-08
D3HRK0_LEGLN (tr|D3HRK0) tRNA pseudouridine synthase A OS=Legion... 67 1e-08
D1RFZ8_LEGLO (tr|D1RFZ8) tRNA pseudouridine synthase A OS=Legion... 67 1e-08
K0IZ82_AMPXN (tr|K0IZ82) tRNA pseudouridine synthase A OS=Amphib... 67 1e-08
K8QFQ2_LACRH (tr|K8QFQ2) tRNA pseudouridine synthase A OS=Lactob... 67 1e-08
K8Q678_LACRH (tr|K8Q678) tRNA pseudouridine synthase A OS=Lactob... 67 1e-08
G6IZG8_LACRH (tr|G6IZG8) tRNA pseudouridine synthase A OS=Lactob... 67 1e-08
B5QPU8_LACRH (tr|B5QPU8) tRNA pseudouridine synthase A OS=Lactob... 67 1e-08
D9R5X6_CLOSW (tr|D9R5X6) tRNA pseudouridine synthase A OS=Clostr... 67 1e-08
R5BSC4_9BACE (tr|R5BSC4) tRNA pseudouridine synthase A OS=Bacter... 67 1e-08
E8LD65_9FIRM (tr|E8LD65) tRNA pseudouridine synthase A OS=Phasco... 67 1e-08
B8JBC1_ANAD2 (tr|B8JBC1) tRNA pseudouridine synthase A OS=Anaero... 67 1e-08
R6XMU8_9FIRM (tr|R6XMU8) tRNA pseudouridine synthase A OS=Firmic... 67 1e-08
A3JQ02_9RHOB (tr|A3JQ02) tRNA pseudouridine synthase A OS=Rhodob... 67 2e-08
N1V5T2_9MICC (tr|N1V5T2) tRNA pseudouridine synthase A OS=Arthro... 67 2e-08
D5RF84_FUSNC (tr|D5RF84) tRNA pseudouridine synthase A OS=Fusoba... 67 2e-08
R5FW10_9FIRM (tr|R5FW10) tRNA pseudouridine synthase A OS=Faecal... 67 2e-08
B7RLD9_9RHOB (tr|B7RLD9) tRNA pseudouridine synthase A OS=Roseob... 67 2e-08
J9DNL7_9THEM (tr|J9DNL7) tRNA pseudouridine synthase A OS=Thermo... 67 2e-08
H8G3Y6_9PSEU (tr|H8G3Y6) tRNA pseudouridine synthase A OS=Saccha... 67 2e-08
C7T713_LACRG (tr|C7T713) tRNA pseudouridine synthase A OS=Lactob... 67 2e-08
K0JHB7_BRAPL (tr|K0JHB7) tRNA pseudouridine synthase A OS=Brachy... 67 2e-08
J5UAZ3_9FIRM (tr|J5UAZ3) tRNA pseudouridine synthase A OS=Eubact... 67 2e-08
R7I2N6_9CLOT (tr|R7I2N6) tRNA pseudouridine synthase A 2 OS=Clos... 66 2e-08
D8ICF0_BRAP9 (tr|D8ICF0) tRNA pseudouridine synthase A OS=Brachy... 66 2e-08
L0F2E2_BRAPL (tr|L0F2E2) tRNA pseudouridine synthase A OS=Brachy... 66 2e-08
J9TSF4_BRAPL (tr|J9TSF4) tRNA pseudouridine synthase A OS=Brachy... 66 2e-08
Q4E7X8_9RICK (tr|Q4E7X8) tRNA pseudouridine synthase (Fragment) ... 66 2e-08
J8V8U3_FUSNU (tr|J8V8U3) tRNA pseudouridine synthase A OS=Fusoba... 66 2e-08
M9WV91_9RICK (tr|M9WV91) tRNA pseudouridine synthase A OS=Wolbac... 66 2e-08
A3SLU7_9RHOB (tr|A3SLU7) tRNA pseudouridine synthase A OS=Roseov... 66 2e-08
A3V9Z5_9RHOB (tr|A3V9Z5) tRNA pseudouridine synthase A OS=Mariti... 66 2e-08
R5SMN5_9CLOT (tr|R5SMN5) tRNA pseudouridine synthase A 2 OS=Clos... 66 2e-08
I1JGM9_SOYBN (tr|I1JGM9) Uncharacterized protein OS=Glycine max ... 66 2e-08
D6LJQ7_9FUSO (tr|D6LJQ7) tRNA pseudouridine synthase A OS=Fusoba... 66 3e-08
R5TJ48_9CLOT (tr|R5TJ48) tRNA pseudouridine synthase A 2 OS=Clos... 66 3e-08
B4V4X1_9ACTO (tr|B4V4X1) tRNA pseudouridine synthase A OS=Strept... 66 3e-08
G2MVS0_9THEO (tr|G2MVS0) tRNA pseudouridine synthase A OS=Thermo... 66 3e-08
A4EPB5_9RHOB (tr|A4EPB5) tRNA pseudouridine synthase A OS=Roseob... 66 3e-08
D3ALA0_9CLOT (tr|D3ALA0) tRNA pseudouridine synthase A OS=Clostr... 66 3e-08
R7N5E4_9FIRM (tr|R7N5E4) tRNA pseudouridine synthase A 1 OS=Firm... 65 3e-08
R9JZ63_9FIRM (tr|R9JZ63) tRNA pseudouridine(38-40) synthase OS=L... 65 3e-08
Q5GSK8_WOLTR (tr|Q5GSK8) tRNA pseudouridine synthase A OS=Wolbac... 65 3e-08
L0DDA4_SINAD (tr|L0DDA4) tRNA pseudouridine synthase A OS=Singul... 65 3e-08
D1B5U1_THEAS (tr|D1B5U1) tRNA pseudouridine synthase A OS=Therma... 65 3e-08
N9WV93_CLOIN (tr|N9WV93) tRNA pseudouridine(38-40) synthase OS=C... 65 3e-08
K8GN11_9CYAN (tr|K8GN11) tRNA pseudouridine synthase A OS=Oscill... 65 3e-08
J1F2V9_9LACO (tr|J1F2V9) tRNA pseudouridine synthase A OS=Lactob... 65 3e-08
G1VJ80_9FIRM (tr|G1VJ80) tRNA pseudouridine synthase A OS=Erysip... 65 3e-08
K4RJ80_HELHE (tr|K4RJ80) tRNA pseudouridine synthase A OS=Helico... 65 3e-08
G9XDD3_9FIRM (tr|G9XDD3) tRNA pseudouridine synthase A OS=Eubact... 65 3e-08
F9EL35_FUSNU (tr|F9EL35) tRNA pseudouridine synthase A OS=Fusoba... 65 3e-08
K4RMQ9_HELHE (tr|K4RMQ9) tRNA pseudouridine synthase OS=Helicoba... 65 4e-08
R5S863_9CLOT (tr|R5S863) tRNA pseudouridine synthase A 1 OS=Clos... 65 4e-08
F2LWT0_HIPMA (tr|F2LWT0) tRNA pseudouridine synthase A OS=Hippea... 65 4e-08
E2SNP6_9FIRM (tr|E2SNP6) tRNA pseudouridine synthase A OS=Erysip... 65 4e-08
A8MGJ9_ALKOO (tr|A8MGJ9) tRNA pseudouridine synthase A OS=Alkali... 65 4e-08
Q2LUS6_SYNAS (tr|Q2LUS6) tRNA pseudouridine synthase A OS=Syntro... 65 4e-08
I0ALT9_IGNAJ (tr|I0ALT9) tRNA pseudouridine synthase A OS=Ignavi... 65 4e-08
B9R8H6_RICCO (tr|B9R8H6) Pseudouridylate synthase, putative OS=R... 65 4e-08
N1WRC8_9FLAO (tr|N1WRC8) tRNA pseudouridine synthase A TruA OS=P... 65 4e-08
I4M5W1_GARVA (tr|I4M5W1) tRNA pseudouridine synthase A OS=Gardne... 65 4e-08
I4M1Z1_GARVA (tr|I4M1Z1) tRNA pseudouridine synthase A OS=Gardne... 65 4e-08
F5SIE8_9BACL (tr|F5SIE8) tRNA pseudouridine synthase A OS=Desmos... 65 5e-08
E8WTK0_GEOS8 (tr|E8WTK0) tRNA pseudouridine synthase A OS=Geobac... 65 5e-08
F8L3C2_SIMNZ (tr|F8L3C2) tRNA pseudouridine synthase A OS=Simkan... 65 5e-08
E0Q8L7_9BIFI (tr|E0Q8L7) tRNA pseudouridine synthase A OS=Bifido... 65 5e-08
Q2CC77_9RHOB (tr|Q2CC77) tRNA pseudouridine synthase A OS=Oceani... 65 5e-08
J7PBQ8_LISMN (tr|J7PBQ8) tRNA pseudouridine synthase A OS=Lister... 65 5e-08
D3KIF4_LISMN (tr|D3KIF4) tRNA pseudouridine synthase A OS=Lister... 65 5e-08
G9X0R9_9FIRM (tr|G9X0R9) tRNA pseudouridine synthase A OS=Eubact... 65 5e-08
M1LXY4_9PROT (tr|M1LXY4) tRNA pseudouridine synthase A OS=Candid... 65 5e-08
M7B4F9_FUSNU (tr|M7B4F9) tRNA pseudouridine synthase A OS=Fusoba... 65 5e-08
C7XRY2_9FUSO (tr|C7XRY2) tRNA pseudouridine synthase A OS=Fusoba... 65 5e-08
L0F5X1_DESDL (tr|L0F5X1) tRNA pseudouridine synthase A OS=Desulf... 65 5e-08
H8NJJ9_RICTP (tr|H8NJJ9) tRNA pseudouridine synthase A OS=Ricket... 65 5e-08
H8NI64_RICTP (tr|H8NI64) tRNA pseudouridine synthase A OS=Ricket... 65 5e-08
D9VUH3_9ACTO (tr|D9VUH3) tRNA pseudouridine synthase A OS=Strept... 65 6e-08
A3IGJ0_9BACI (tr|A3IGJ0) tRNA pseudouridine synthase (Fragment) ... 65 6e-08
M7P702_9BACL (tr|M7P702) tRNA pseudouridine synthase A OS=Bharga... 65 6e-08
E7FYC9_9HELI (tr|E7FYC9) tRNA pseudouridine synthase A OS=Helico... 65 6e-08
J9YZA5_9PROT (tr|J9YZA5) tRNA pseudouridine synthase A OS=alpha ... 65 6e-08
D6L7S5_9FUSO (tr|D6L7S5) tRNA pseudouridine synthase A OS=Fusoba... 65 6e-08
D8QUD6_SELML (tr|D8QUD6) tRNA pseudouridine synthase (Fragment) ... 65 6e-08
D8R403_SELML (tr|D8R403) tRNA pseudouridine synthase (Fragment) ... 65 6e-08
R5CZK2_9FIRM (tr|R5CZK2) tRNA pseudouridine synthase A 2 OS=Dore... 65 6e-08
N6UR35_9RHIZ (tr|N6UR35) tRNA pseudouridine synthase A OS=Barton... 65 6e-08
I4MFF9_GARVA (tr|I4MFF9) tRNA pseudouridine synthase A OS=Gardne... 65 7e-08
D5AYE6_RICPP (tr|D5AYE6) tRNA pseudouridine synthase A OS=Ricket... 64 7e-08
R0MBH3_RICPO (tr|R0MBH3) RNA polymerase sigma factor RpoD OS=Ric... 64 7e-08
R0KH72_RICPO (tr|R0KH72) Uncharacterized protein OS=Rickettsia p... 64 7e-08
M9TDH2_RICPO (tr|M9TDH2) RNA polymerase sigma factor RpoD OS=Ric... 64 7e-08
M9TD69_RICPO (tr|M9TD69) tRNA pseudouridine synthase A OS=Ricket... 64 7e-08
H8NF95_RICPO (tr|H8NF95) tRNA pseudouridine synthase A OS=Ricket... 64 7e-08
H8NCI2_RICPO (tr|H8NCI2) tRNA pseudouridine synthase A OS=Ricket... 64 7e-08
H8NBB9_RICPO (tr|H8NBB9) tRNA pseudouridine synthase A OS=Ricket... 64 7e-08
H8N8B9_RICPO (tr|H8N8B9) tRNA pseudouridine synthase A OS=Ricket... 64 7e-08
H8N5X4_RICPO (tr|H8N5X4) tRNA pseudouridine synthase A OS=Ricket... 64 7e-08
H8N4U6_RICPO (tr|H8N4U6) tRNA pseudouridine synthase A OS=Ricket... 64 7e-08
R1ECN0_EMIHU (tr|R1ECN0) Uncharacterized protein OS=Emiliania hu... 64 7e-08
C2JYL1_LACRH (tr|C2JYL1) tRNA pseudouridine synthase A OS=Lactob... 64 7e-08
E7FQB6_9LACO (tr|E7FQB6) tRNA pseudouridine synthase A OS=Lactob... 64 7e-08
C4FK30_9AQUI (tr|C4FK30) tRNA pseudouridine synthase A OS=Sulfur... 64 7e-08
M2Q2T6_9FIRM (tr|M2Q2T6) tRNA pseudouridine synthase A OS=Eggert... 64 7e-08
H1HH08_FUSNU (tr|H1HH08) tRNA pseudouridine synthase A OS=Fusoba... 64 7e-08
Q2LWJ8_SYNAS (tr|Q2LWJ8) tRNA pseudouridine synthase A OS=Syntro... 64 7e-08
C7MTX7_SACVD (tr|C7MTX7) tRNA pseudouridine synthase A OS=Saccha... 64 8e-08
M9WRV1_9RICK (tr|M9WRV1) Pseudouridine synthase OS=Wolbachia end... 64 8e-08
J0SG00_FUSNU (tr|J0SG00) tRNA pseudouridine synthase A OS=Fusoba... 64 8e-08
F4A2V1_MAHA5 (tr|F4A2V1) tRNA pseudouridine synthase A OS=Mahell... 64 8e-08
G2SR81_LACRR (tr|G2SR81) tRNA pseudouridine synthase A OS=Lactob... 64 8e-08
R6SRM0_9LACO (tr|R6SRM0) tRNA pseudouridine synthase A OS=Lactob... 64 8e-08
F7R3G7_9LACO (tr|F7R3G7) tRNA pseudouridine synthase A OS=Lactob... 64 8e-08
A0YJR8_LYNSP (tr|A0YJR8) tRNA pseudouridine synthase A OS=Lyngby... 64 8e-08
A5TRQ8_FUSNP (tr|A5TRQ8) tRNA pseudouridine synthase A OS=Fusoba... 64 8e-08
R6XU67_9CLOT (tr|R6XU67) tRNA pseudouridine synthase A OS=Clostr... 64 8e-08
J7MX69_LISMN (tr|J7MX69) tRNA pseudouridine synthase A OS=Lister... 64 8e-08
J7MLX7_LISMN (tr|J7MLX7) tRNA pseudouridine synthase A OS=Lister... 64 8e-08
G5GYU8_FUSNP (tr|G5GYU8) tRNA pseudouridine synthase A OS=Fusoba... 64 8e-08
E6YXK6_BARSR (tr|E6YXK6) tRNA pseudouridine synthase A OS=Barton... 64 8e-08
D7UFL5_LISMN (tr|D7UFL5) tRNA pseudouridine synthase A OS=Lister... 64 8e-08
C8K6E3_LISMN (tr|C8K6E3) tRNA pseudouridine synthase A OS=Lister... 64 8e-08
Q03EE7_PEDPA (tr|Q03EE7) tRNA pseudouridine synthase A OS=Pedioc... 64 8e-08
D0BTV9_9FUSO (tr|D0BTV9) tRNA pseudouridine synthase A OS=Fusoba... 64 9e-08
L7W5X2_NONDD (tr|L7W5X2) tRNA pseudouridine synthase A OS=Nonlab... 64 9e-08
R6M2M7_9FIRM (tr|R6M2M7) tRNA pseudouridine synthase A 2 OS=Firm... 64 1e-07
I4LZU6_GARVA (tr|I4LZU6) tRNA pseudouridine synthase A OS=Gardne... 64 1e-07
D7N6X8_9FIRM (tr|D7N6X8) tRNA pseudouridine synthase A OS=Pepton... 64 1e-07
D5U822_BRAM5 (tr|D5U822) tRNA pseudouridine synthase A OS=Brachy... 64 1e-07
C5C0F7_BEUC1 (tr|C5C0F7) tRNA pseudouridine synthase A OS=Beuten... 64 1e-07
R7FC46_9FIRM (tr|R7FC46) tRNA pseudouridine synthase A OS=Rumino... 64 1e-07
I5BU77_9RHIZ (tr|I5BU77) tRNA pseudouridine synthase A OS=Nitrat... 64 1e-07
C3WTC9_9FUSO (tr|C3WTC9) tRNA pseudouridine synthase A OS=Fusoba... 64 1e-07
G2K2M9_LISM4 (tr|G2K2M9) tRNA pseudouridine synthase A OS=Lister... 64 1e-07
D2P7Z7_LISM2 (tr|D2P7Z7) tRNA pseudouridine synthase A OS=Lister... 64 1e-07
D2NWH8_LISM1 (tr|D2NWH8) tRNA pseudouridine synthase A OS=Lister... 64 1e-07
J7P542_LISMN (tr|J7P542) tRNA pseudouridine synthase A OS=Lister... 64 1e-07
J7NP85_LISMN (tr|J7NP85) tRNA pseudouridine synthase A OS=Lister... 64 1e-07
J7NJT1_LISMN (tr|J7NJT1) tRNA pseudouridine synthase A OS=Lister... 64 1e-07
J7MR66_LISMN (tr|J7MR66) tRNA pseudouridine synthase A OS=Lister... 64 1e-07
G2KEC3_LISMN (tr|G2KEC3) tRNA pseudouridine synthase A OS=Lister... 64 1e-07
G2KAG0_LISMN (tr|G2KAG0) tRNA pseudouridine synthase A OS=Lister... 64 1e-07
G2JUC1_LISMN (tr|G2JUC1) tRNA pseudouridine synthase A OS=Lister... 64 1e-07
D4PW64_LISMN (tr|D4PW64) tRNA pseudouridine synthase A OS=Lister... 64 1e-07
C8KD94_LISMN (tr|C8KD94) tRNA pseudouridine synthase A OS=Lister... 64 1e-07
C8JXA1_LISMN (tr|C8JXA1) tRNA pseudouridine synthase A OS=Lister... 64 1e-07
G0EM30_BRAIP (tr|G0EM30) tRNA pseudouridine synthase A OS=Brachy... 64 1e-07
B7C9S2_9FIRM (tr|B7C9S2) tRNA pseudouridine synthase A OS=Eubact... 64 1e-07
A8ZTL2_DESOH (tr|A8ZTL2) tRNA pseudouridine synthase A OS=Desulf... 64 1e-07
R5Y5V3_9CLOT (tr|R5Y5V3) tRNA pseudouridine synthase A OS=Clostr... 64 1e-07
Q7P2Y9_FUSNV (tr|Q7P2Y9) tRNA pseudouridine synthase A OS=Fusoba... 64 1e-07
D6S739_PEPMA (tr|D6S739) tRNA pseudouridine synthase A OS=Finego... 64 1e-07
C9CZP8_9RHOB (tr|C9CZP8) tRNA pseudouridine synthase A OS=Silici... 64 1e-07
R5LIM1_9MOLU (tr|R5LIM1) tRNA pseudouridine synthase A OS=Mycopl... 64 1e-07
K2MTL9_9RHIZ (tr|K2MTL9) tRNA pseudouridine synthase A OS=Nitrat... 64 1e-07
N9XHX4_9CLOT (tr|N9XHX4) tRNA pseudouridine(38-40) synthase OS=C... 64 1e-07
K4IQ00_BIFAP (tr|K4IQ00) tRNA pseudouridine synthase A OS=Bifido... 64 1e-07
B6XWT4_9BIFI (tr|B6XWT4) tRNA pseudouridine synthase A OS=Bifido... 64 1e-07
D2R9Q1_GARV4 (tr|D2R9Q1) tRNA pseudouridine synthase A OS=Gardne... 64 1e-07
F4GU37_PUSST (tr|F4GU37) tRNA pseudouridine synthase A OS=Pusill... 64 1e-07
D2Q8J8_BIFDB (tr|D2Q8J8) tRNA pseudouridine synthase A OS=Bifido... 64 1e-07
R9L057_9FIRM (tr|R9L057) tRNA pseudouridine(38-40) synthase OS=L... 64 1e-07
Q4EGE3_LISMN (tr|Q4EGE3) tRNA pseudouridine synthase A OS=Lister... 64 1e-07
K8EZT0_LISMN (tr|K8EZT0) tRNA pseudouridine synthase A OS=Lister... 64 1e-07
J7PL01_LISMN (tr|J7PL01) tRNA pseudouridine synthase A OS=Lister... 64 1e-07
J7PJ66_LISMN (tr|J7PJ66) tRNA pseudouridine synthase A OS=Lister... 64 1e-07
I0CUT0_LISMN (tr|I0CUT0) tRNA pseudouridine synthase A OS=Lister... 64 1e-07
F3RA59_LISMN (tr|F3RA59) tRNA pseudouridine synthase A OS=Lister... 64 1e-07
D4PLC9_LISMN (tr|D4PLC9) tRNA pseudouridine synthase A OS=Lister... 64 1e-07
A3V313_9RHOB (tr|A3V313) tRNA pseudouridine synthase A OS=Loktan... 64 1e-07
E3YJQ6_LISMN (tr|E3YJQ6) tRNA pseudouridine synthase A OS=Lister... 64 1e-07
C6SLY1_NEIME (tr|C6SLY1) tRNA pseudouridine synthase A OS=Neisse... 64 1e-07
B4RDU3_PHEZH (tr|B4RDU3) tRNA pseudouridine synthase A OS=Phenyl... 64 1e-07
K9T848_9CYAN (tr|K9T848) tRNA pseudouridine synthase A OS=Pleuro... 64 1e-07
K9A218_9BACI (tr|K9A218) tRNA pseudouridine synthase A OS=Lysini... 64 1e-07
D7WZT2_9BACI (tr|D7WZT2) tRNA pseudouridine synthase A OS=Lysini... 64 1e-07
J7PKX0_LISMN (tr|J7PKX0) tRNA pseudouridine synthase A OS=Lister... 64 1e-07
G9XJV6_DESHA (tr|G9XJV6) tRNA pseudouridine synthase A OS=Desulf... 64 1e-07
R9Q5Q1_9AQUI (tr|R9Q5Q1) tRNA pseudouridine synthase A OS=Hydrog... 64 1e-07
R9Q174_9AQUI (tr|R9Q174) tRNA pseudouridine synthase A OS=Hydrog... 64 1e-07
M4V6Q0_9AQUI (tr|M4V6Q0) Pseudouridylate synthase I OS=Hydrogeno... 64 1e-07
M1RKM7_9AQUI (tr|M1RKM7) tRNA pseudouridine synthase A OS=Hydrog... 64 1e-07
A0JZ47_ARTS2 (tr|A0JZ47) tRNA pseudouridine synthase A OS=Arthro... 64 1e-07
F6B2M9_DESCC (tr|F6B2M9) tRNA pseudouridine synthase A OS=Desulf... 64 1e-07
F0DMX2_9FIRM (tr|F0DMX2) tRNA pseudouridine synthase A OS=Desulf... 64 1e-07
H6R0Q7_NOCCG (tr|H6R0Q7) tRNA pseudouridine synthase A OS=Nocard... 64 1e-07
F7KJK0_9FIRM (tr|F7KJK0) tRNA pseudouridine synthase A OS=Lachno... 63 2e-07
R6XMT0_9BACT (tr|R6XMT0) tRNA pseudouridine synthase A OS=Alisti... 63 2e-07
R6N7L5_9CLOT (tr|R6N7L5) tRNA pseudouridine synthase A 2 OS=Clos... 63 2e-07
H0U1U1_WOLPI (tr|H0U1U1) tRNA pseudouridine synthase A OS=Wolbac... 63 2e-07
F2F4E0_SOLSS (tr|F2F4E0) tRNA pseudouridine synthase A OS=Soliba... 63 2e-07
R9CCN3_9BACI (tr|R9CCN3) tRNA pseudouridine synthase A OS=Bacill... 63 2e-07
R9N3H4_9FIRM (tr|R9N3H4) tRNA pseudouridine(38-40) synthase OS=L... 63 2e-07
C3WYL5_9FUSO (tr|C3WYL5) tRNA pseudouridine synthase A OS=Fusoba... 63 2e-07
E4U9J4_OCEP5 (tr|E4U9J4) tRNA pseudouridine synthase A OS=Oceani... 63 2e-07
R5NQM8_9CLOT (tr|R5NQM8) tRNA pseudouridine synthase A OS=Clostr... 63 2e-07
D5EE14_AMICL (tr|D5EE14) tRNA pseudouridine synthase A OS=Aminob... 63 2e-07
R0DPW4_9RHOB (tr|R0DPW4) tRNA pseudouridine synthase A OS=Rueger... 63 2e-07
H1B828_9FIRM (tr|H1B828) tRNA pseudouridine synthase A OS=Erysip... 63 2e-07
H1AWC0_9FIRM (tr|H1AWC0) tRNA pseudouridine synthase A OS=Erysip... 63 2e-07
E4LNR3_9CLOT (tr|E4LNR3) tRNA pseudouridine synthase A OS=Clostr... 63 2e-07
Q250I7_DESHY (tr|Q250I7) tRNA pseudouridine synthase A OS=Desulf... 63 2e-07
R6M8S7_9CLOT (tr|R6M8S7) tRNA pseudouridine synthase A 1 OS=Clos... 63 2e-07
G6ANI8_LACRH (tr|G6ANI8) tRNA pseudouridine synthase A OS=Lactob... 63 2e-07
D6ZBI9_SEGRD (tr|D6ZBI9) tRNA pseudouridine synthase A OS=Segnil... 63 2e-07
D5WS77_BACT2 (tr|D5WS77) tRNA pseudouridine synthase A OS=Bacill... 63 2e-07
J7PHM1_LISMN (tr|J7PHM1) tRNA pseudouridine synthase A OS=Lister... 63 2e-07
F3YNI0_LISMN (tr|F3YNI0) tRNA pseudouridine synthase A OS=Lister... 63 2e-07
F3RMN6_LISMN (tr|F3RMN6) tRNA pseudouridine synthase A OS=Lister... 63 2e-07
D4Q0A7_LISMN (tr|D4Q0A7) tRNA pseudouridine synthase A OS=Lister... 63 2e-07
R5XJ12_9FUSO (tr|R5XJ12) tRNA pseudouridine synthase A OS=Fusoba... 63 2e-07
K1KKJ0_9BACI (tr|K1KKJ0) tRNA pseudouridine synthase A OS=Bacill... 63 2e-07
I4MBP2_GARVA (tr|I4MBP2) tRNA pseudouridine synthase A OS=Gardne... 63 2e-07
D6YZQ4_DESAT (tr|D6YZQ4) tRNA pseudouridine synthase A OS=Desulf... 63 2e-07
K9TT50_9CYAN (tr|K9TT50) tRNA pseudouridine synthase A OS=Chrooc... 63 2e-07
F7MDC7_9FUSO (tr|F7MDC7) tRNA pseudouridine synthase A OS=Fusoba... 63 2e-07
M1WSN2_DESPC (tr|M1WSN2) tRNA pseudouridine synthase A OS=Desulf... 63 2e-07
A4EN27_9RHOB (tr|A4EN27) tRNA pseudouridine synthase A OS=Roseob... 63 2e-07
L7CBP4_RHOBT (tr|L7CBP4) tRNA pseudouridine synthase A OS=Rhodop... 63 2e-07
Q39Y26_GEOMG (tr|Q39Y26) tRNA pseudouridine synthase A OS=Geobac... 63 2e-07
R6PER2_9FIRM (tr|R6PER2) tRNA pseudouridine synthase A 1 OS=Euba... 63 2e-07
H1LBF8_GEOME (tr|H1LBF8) tRNA pseudouridine synthase A OS=Geobac... 63 2e-07
K9IEF2_9LACO (tr|K9IEF2) tRNA pseudouridine synthase A OS=Pedioc... 63 2e-07
D0LWH9_HALO1 (tr|D0LWH9) tRNA pseudouridine synthase A OS=Halian... 63 2e-07
M1Z1W5_9BACT (tr|M1Z1W5) tRNA pseudouridine synthase A OS=Nitros... 63 2e-07
C6PXK3_9CLOT (tr|C6PXK3) tRNA pseudouridine synthase A OS=Clostr... 63 2e-07
I9W732_9RALS (tr|I9W732) tRNA pseudouridine synthase A OS=Ralsto... 63 2e-07
M5SKW4_9PLAN (tr|M5SKW4) tRNA pseudouridine synthase A OS=Rhodop... 63 2e-07
M2AJK2_9PLAN (tr|M2AJK2) tRNA pseudouridine synthase A OS=Rhodop... 63 2e-07
K5D7S1_RHOBT (tr|K5D7S1) tRNA pseudouridine synthase A OS=Rhodop... 63 2e-07
R6XLV3_9BACT (tr|R6XLV3) tRNA pseudouridine synthase A OS=Alisti... 63 2e-07
R6UI61_9FIRM (tr|R6UI61) tRNA pseudouridine synthase A OS=Erysip... 63 2e-07
J4KC26_STRAP (tr|J4KC26) tRNA pseudouridine synthase A OS=Strept... 63 2e-07
M6CJ85_LEPME (tr|M6CJ85) tRNA pseudouridine(38-40) synthase OS=L... 63 2e-07
K5BQX8_LEPME (tr|K5BQX8) tRNA pseudouridine synthase A OS=Leptos... 63 2e-07
C8W418_DESAS (tr|C8W418) tRNA pseudouridine synthase A OS=Desulf... 63 2e-07
C0BQF2_9BIFI (tr|C0BQF2) tRNA pseudouridine synthase A OS=Bifido... 63 2e-07
I4BV55_ANAMD (tr|I4BV55) tRNA pseudouridine synthase A OS=Anaero... 63 2e-07
E8Q759_BLOVB (tr|E8Q759) tRNA pseudouridine synthase A OS=Blochm... 63 2e-07
L8E6W4_LISMN (tr|L8E6W4) tRNA pseudouridine synthase A OS=Lister... 63 2e-07
L8DWT5_LISMN (tr|L8DWT5) tRNA pseudouridine synthase A OS=Lister... 63 2e-07
H6LGR8_ACEWD (tr|H6LGR8) tRNA pseudouridine synthase A OS=Acetob... 63 2e-07
R6WD78_9FIRM (tr|R6WD78) tRNA pseudouridine synthase A 2 OS=Dore... 63 2e-07
Q2JUJ7_SYNJA (tr|Q2JUJ7) tRNA pseudouridine synthase A OS=Synech... 63 2e-07
F2RJW1_STRVP (tr|F2RJW1) tRNA pseudouridine synthase A OS=Strept... 63 2e-07
J1JK90_9RHIZ (tr|J1JK90) tRNA pseudouridine synthase A OS=Barton... 63 2e-07
E1KXS1_PEPMA (tr|E1KXS1) tRNA pseudouridine synthase A OS=Finego... 63 2e-07
L1KFK3_9RHOB (tr|L1KFK3) tRNA pseudouridine synthase A OS=Rhodob... 63 2e-07
G7JGT6_MEDTR (tr|G7JGT6) tRNA pseudouridine synthase OS=Medicago... 63 2e-07
F8BA07_LISMM (tr|F8BA07) tRNA pseudouridine synthase A OS=Lister... 63 2e-07
E1UBI1_LISML (tr|E1UBI1) tRNA pseudouridine synthase A OS=Lister... 63 2e-07
J0Q9D4_9RHIZ (tr|J0Q9D4) tRNA pseudouridine synthase A OS=Barton... 63 2e-07
F9MZ26_PEPMA (tr|F9MZ26) tRNA pseudouridine synthase A OS=Finego... 63 2e-07
D9PP68_PEPMA (tr|D9PP68) tRNA pseudouridine synthase A OS=Finego... 63 2e-07
A0NSB1_9RHOB (tr|A0NSB1) tRNA pseudouridine synthase A OS=Labren... 63 2e-07
G9EU60_9GAMM (tr|G9EU60) tRNA pseudouridine synthase A OS=Legion... 63 3e-07
G7JGU0_MEDTR (tr|G7JGU0) Uncharacterized protein OS=Medicago tru... 62 3e-07
B9NQ81_9RHOB (tr|B9NQ81) tRNA pseudouridine synthase A OS=Rhodob... 62 3e-07
J1K121_9RHIZ (tr|J1K121) tRNA pseudouridine synthase A OS=Barton... 62 3e-07
J0ZW28_9RHIZ (tr|J0ZW28) tRNA pseudouridine synthase A OS=Barton... 62 3e-07
M1LMK3_9CLOT (tr|M1LMK3) tRNA pseudouridine synthase A OS=Clostr... 62 3e-07
B7FLC8_MEDTR (tr|B7FLC8) Uncharacterized protein OS=Medicago tru... 62 3e-07
M2XVR2_GALSU (tr|M2XVR2) tRNA pseudouridine synthase A OS=Galdie... 62 3e-07
G1Y1F0_9PROT (tr|G1Y1F0) tRNA pseudouridine synthase A OS=Azospi... 62 3e-07
Q1IRQ4_KORVE (tr|Q1IRQ4) tRNA pseudouridine synthase A OS=Koriba... 62 3e-07
D7AMW1_GEOSK (tr|D7AMW1) tRNA pseudouridine synthase A OS=Geobac... 62 3e-07
M1WV50_9NOST (tr|M1WV50) tRNA pseudouridine synthase A OS=Richel... 62 3e-07
D0CXH5_9RHOB (tr|D0CXH5) tRNA pseudouridine synthase A OS=Silici... 62 3e-07
C5WCA7_9ENTR (tr|C5WCA7) tRNA pseudouridine synthase A OS=Candid... 62 3e-07
H5V8S6_HELBI (tr|H5V8S6) tRNA pseudouridine synthase A OS=Helico... 62 3e-07
J3TGT3_9ENTR (tr|J3TGT3) tRNA pseudouridine synthase A OS=second... 62 3e-07
G2NF69_9ACTO (tr|G2NF69) tRNA pseudouridine synthase A OS=Strept... 62 3e-07
J0ZT41_9RHIZ (tr|J0ZT41) tRNA pseudouridine synthase A OS=Barton... 62 3e-07
C0BZJ1_9CLOT (tr|C0BZJ1) tRNA pseudouridine synthase A OS=Clostr... 62 3e-07
K0ETC8_9NOCA (tr|K0ETC8) tRNA pseudouridine synthase A OS=Nocard... 62 3e-07
B9TLD0_RICCO (tr|B9TLD0) tRNA pseudouridine synthase (Fragment) ... 62 3e-07
R6SR18_9FIRM (tr|R6SR18) tRNA pseudouridine synthase A 2 OS=Dore... 62 3e-07
G1WUI0_9FIRM (tr|G1WUI0) tRNA pseudouridine synthase A OS=Dorea ... 62 3e-07
B0G1Z8_9FIRM (tr|B0G1Z8) tRNA pseudouridine synthase A OS=Dorea ... 62 3e-07
F9ZFZ4_9PROT (tr|F9ZFZ4) tRNA pseudouridine synthase A OS=Nitros... 62 3e-07
D1CFF5_THET1 (tr|D1CFF5) tRNA pseudouridine synthase A OS=Thermo... 62 3e-07
F8LB99_9CHLA (tr|F8LB99) tRNA pseudouridine synthase A OS=Waddli... 62 3e-07
C6JLP7_FUSVA (tr|C6JLP7) tRNA pseudouridine synthase A OS=Fusoba... 62 3e-07
M1WYZ3_9NOST (tr|M1WYZ3) tRNA pseudouridine synthase A OS=Richel... 62 3e-07
R6FNV4_9CLOT (tr|R6FNV4) tRNA pseudouridine synthase A OS=Clostr... 62 3e-07
M7YB06_9RHIZ (tr|M7YB06) tRNA pseudouridine synthase A OS=Methyl... 62 3e-07
A9EAT3_9RHOB (tr|A9EAT3) tRNA pseudouridine synthase A OS=Oceani... 62 3e-07
B8FTY6_DESHD (tr|B8FTY6) tRNA pseudouridine synthase A OS=Desulf... 62 3e-07
C1F1S9_ACIC5 (tr|C1F1S9) tRNA pseudouridine synthase A OS=Acidob... 62 3e-07
E6Q5I0_9ZZZZ (tr|E6Q5I0) Pseudouridylate synthase I (Modular pro... 62 4e-07
I1CXL7_9PSEU (tr|I1CXL7) tRNA pseudouridine synthase A OS=Saccha... 62 4e-07
L7L6L9_9ACTO (tr|L7L6L9) tRNA pseudouridine synthase A OS=Gordon... 62 4e-07
D6YUD5_WADCW (tr|D6YUD5) tRNA pseudouridine synthase A OS=Waddli... 62 4e-07
C4RAU9_9ACTO (tr|C4RAU9) tRNA pseudouridine synthase A OS=Microm... 62 4e-07
D7CU58_TRURR (tr|D7CU58) tRNA pseudouridine synthase A OS=Truepe... 62 4e-07
R6NSQ7_9BIFI (tr|R6NSQ7) tRNA pseudouridine synthase A OS=Bifido... 62 4e-07
R4RYI1_LACFE (tr|R4RYI1) tRNA pseudouridine synthase A OS=Lactob... 62 4e-07
C0WZT7_LACFE (tr|C0WZT7) tRNA pseudouridine synthase A OS=Lactob... 62 4e-07
L8XPM2_9SPIR (tr|L8XPM2) tRNA pseudouridine synthase A OS=Brachy... 62 4e-07
F7L0U6_9FUSO (tr|F7L0U6) tRNA pseudouridine synthase A OS=Fusoba... 62 4e-07
E0RPI6_SPITD (tr|E0RPI6) tRNA pseudouridine synthase A OS=Spiroc... 62 4e-07
F8A9L6_THEID (tr|F8A9L6) tRNA pseudouridine synthase A OS=Thermo... 62 4e-07
D4H707_DENA2 (tr|D4H707) tRNA pseudouridine synthase A OS=Denitr... 62 4e-07
D8UF65_VOLCA (tr|D8UF65) tRNA pseudouridine synthase (Fragment) ... 62 4e-07
C7MEW9_BRAFD (tr|C7MEW9) tRNA pseudouridine synthase A OS=Brachy... 62 4e-07
F5M4W2_RHOSH (tr|F5M4W2) tRNA pseudouridine synthase A OS=Rhodob... 62 4e-07
E5XKM6_9ACTO (tr|E5XKM6) tRNA pseudouridine synthase A OS=Segnil... 62 4e-07
E5C2J6_9FUSO (tr|E5C2J6) tRNA pseudouridine synthase A OS=Fusoba... 62 4e-07
A3UFC3_9RHOB (tr|A3UFC3) tRNA pseudouridine synthase A OS=Oceani... 62 4e-07
K1WD33_SPIPL (tr|K1WD33) tRNA pseudouridine synthase A OS=Arthro... 62 4e-07
H1WMF8_9CYAN (tr|H1WMF8) tRNA pseudouridine synthase A OS=Arthro... 62 4e-07
B5W6Q6_SPIMA (tr|B5W6Q6) tRNA pseudouridine synthase A OS=Arthro... 62 4e-07
>I1KPQ1_SOYBN (tr|I1KPQ1) tRNA pseudouridine synthase OS=Glycine max PE=3 SV=2
Length = 444
Score = 596 bits (1537), Expect = e-168, Method: Compositional matrix adjust.
Identities = 280/355 (78%), Positives = 311/355 (87%)
Query: 31 SSSMDNHRETENYAHYNHTDPCKHARWNARESYEFMYARPWQRVNDFYLNAVLGNLSLPL 90
S SM+N R+TE + HYNHT P K+ARW ARES+EFMYARPWQRVNDFYLN V NLSLPL
Sbjct: 38 SISMNNLRQTETHVHYNHTHPSKYARWTARESFEFMYARPWQRVNDFYLNIVRANLSLPL 97
Query: 91 LFGAEKIHDHNNEPGIPAVSDKPEFESVASRGRGGRWARLTFKIVLSYHGGSFDGWQKQP 150
LFGA+ + +N+ GI A+S E ESVAS R GRWAR TFKI+LSYHGGSFDGWQKQP
Sbjct: 98 LFGAQTLVVDHNDTGIAALSGSSELESVASEDRSGRWARTTFKIILSYHGGSFDGWQKQP 157
Query: 151 GLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKGVTALQQVCSFYTWKK 210
GLNTVQS++EG LG FVDE KTQ LKD+GLPIEG VAGRTDKGVT LQQVCSFYTWKK
Sbjct: 158 GLNTVQSIVEGSLGKFVDEKKTQLLKDKGLPIEGCAIVAGRTDKGVTGLQQVCSFYTWKK 217
Query: 211 DVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYLYIFPLTDGGYKDQSSGS 270
DVKPRDIEDAI HAAPGKLRVISVSEVSR FHPNFSAKWRRYLYIFPLT+GGY DQSS +
Sbjct: 218 DVKPRDIEDAINHAAPGKLRVISVSEVSRVFHPNFSAKWRRYLYIFPLTNGGYTDQSSDN 277
Query: 271 GEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQKLEGKLLSYKMFARDTKASR 330
GEF+D+ + NEIHDS+SKD+LENE KSY FS+SKVNRLL+KLEGKLLSYKMFARDTKASR
Sbjct: 278 GEFYDSFKYNEIHDSASKDELENEKKSYAFSISKVNRLLRKLEGKLLSYKMFARDTKASR 337
Query: 331 NEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVANRFLRRMVRVLVATSIR 385
N+GPPTECF+YHARA+E +LP D+ EET+VMC+ELVANRFLR+MVRVLVATSIR
Sbjct: 338 NDGPPTECFVYHARAMEVKLPATDHGEETKVMCVELVANRFLRKMVRVLVATSIR 392
>I3SYJ2_MEDTR (tr|I3SYJ2) tRNA pseudouridine synthase OS=Medicago truncatula PE=2
SV=1
Length = 400
Score = 540 bits (1392), Expect = e-151, Method: Compositional matrix adjust.
Identities = 259/344 (75%), Positives = 294/344 (85%), Gaps = 5/344 (1%)
Query: 42 NYAHYNHTDPCKHARWNARESYEFMYARPWQRVNDFYLNAVLGNLSLPLLFGAEKIHDHN 101
++ HYNHT P K+ARWNARES+EFMYARPWQRVN FY N V GNLSLPLLF ++ + H+
Sbjct: 10 HHVHYNHTHPSKYARWNARESFEFMYARPWQRVNHFYSNTVRGNLSLPLLFQSQTLPVHD 69
Query: 102 NEPGIPAVSDKPEFESVASRGRGGRWARLTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEG 161
+ +P +S EF+S AS+ R G+WAR FKI+LSYHGGSFDGWQKQP LNTVQSV+E
Sbjct: 70 SR--VPEIS---EFQSGASKDRSGKWARFNFKILLSYHGGSFDGWQKQPNLNTVQSVVEV 124
Query: 162 PLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKGVTALQQVCSFYTWKKDVKPRDIEDAI 221
LG FVDENKTQ LKD+GLPI+G VAGRTDKGVTALQQVCSFYTWKKD+KPR+IEDAI
Sbjct: 125 SLGKFVDENKTQLLKDKGLPIQGCAAVAGRTDKGVTALQQVCSFYTWKKDIKPREIEDAI 184
Query: 222 YHAAPGKLRVISVSEVSRAFHPNFSAKWRRYLYIFPLTDGGYKDQSSGSGEFFDTLRNNE 281
AAPGKLRV+SV EVSRAFHPNFSAKWRRYLYIFPLTDG KDQS G+GE D+ NE
Sbjct: 185 NDAAPGKLRVVSVYEVSRAFHPNFSAKWRRYLYIFPLTDGQDKDQSGGNGESCDSFIYNE 244
Query: 282 IHDSSSKDDLENETKSYMFSVSKVNRLLQKLEGKLLSYKMFARDTKASRNEGPPTECFLY 341
I DS SKD+LE E KSY+F V KVNRLLQKLEGK+LSYKMFARDTKASRN+GPPTECF++
Sbjct: 245 ICDSDSKDELEKENKSYVFGVRKVNRLLQKLEGKMLSYKMFARDTKASRNDGPPTECFVH 304
Query: 342 HARAIEARLPLADNDEETRVMCIELVANRFLRRMVRVLVATSIR 385
HARA+EA+LP+ +N EETRVMCIELVANRFLR+MVRVLVAT+IR
Sbjct: 305 HARAMEAKLPITENGEETRVMCIELVANRFLRKMVRVLVATTIR 348
>G7LIU9_MEDTR (tr|G7LIU9) tRNA pseudouridine synthase OS=Medicago truncatula
GN=MTR_8g101250 PE=3 SV=1
Length = 400
Score = 539 bits (1388), Expect = e-151, Method: Compositional matrix adjust.
Identities = 258/344 (75%), Positives = 293/344 (85%), Gaps = 5/344 (1%)
Query: 42 NYAHYNHTDPCKHARWNARESYEFMYARPWQRVNDFYLNAVLGNLSLPLLFGAEKIHDHN 101
++ HYNHT P K+ARWNARES+EFMYARPWQRVN FY N V GN SLPLLF ++ + H+
Sbjct: 10 HHVHYNHTHPSKYARWNARESFEFMYARPWQRVNHFYSNTVRGNFSLPLLFQSQTLPVHD 69
Query: 102 NEPGIPAVSDKPEFESVASRGRGGRWARLTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEG 161
+ +P +S EF+S AS+ R G+WAR FKI+LSYHGGSFDGWQKQP LNTVQSV+E
Sbjct: 70 SR--VPEIS---EFQSGASKDRSGKWARFNFKILLSYHGGSFDGWQKQPNLNTVQSVVEV 124
Query: 162 PLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKGVTALQQVCSFYTWKKDVKPRDIEDAI 221
LG FVDENKTQ LKD+GLPI+G VAGRTDKGVTALQQVCSFYTWKKD+KPR+IEDAI
Sbjct: 125 SLGKFVDENKTQLLKDKGLPIQGCAAVAGRTDKGVTALQQVCSFYTWKKDIKPREIEDAI 184
Query: 222 YHAAPGKLRVISVSEVSRAFHPNFSAKWRRYLYIFPLTDGGYKDQSSGSGEFFDTLRNNE 281
AAPGKLRV+SV EVSRAFHPNFSAKWRRYLYIFPLTDG KDQS G+GE D+ NE
Sbjct: 185 NDAAPGKLRVVSVYEVSRAFHPNFSAKWRRYLYIFPLTDGQDKDQSGGNGESCDSFIYNE 244
Query: 282 IHDSSSKDDLENETKSYMFSVSKVNRLLQKLEGKLLSYKMFARDTKASRNEGPPTECFLY 341
I DS SKD+LE E KSY+F V KVNRLLQKLEGK+LSYKMFARDTKASRN+GPPTECF++
Sbjct: 245 ICDSDSKDELEKENKSYVFGVRKVNRLLQKLEGKMLSYKMFARDTKASRNDGPPTECFVH 304
Query: 342 HARAIEARLPLADNDEETRVMCIELVANRFLRRMVRVLVATSIR 385
HARA+EA+LP+ +N EETRVMCIELVANRFLR+MVRVLVAT+IR
Sbjct: 305 HARAMEAKLPITENGEETRVMCIELVANRFLRKMVRVLVATTIR 348
>K7KRU2_SOYBN (tr|K7KRU2) tRNA pseudouridine synthase OS=Glycine max PE=3 SV=1
Length = 372
Score = 521 bits (1341), Expect = e-145, Method: Compositional matrix adjust.
Identities = 247/320 (77%), Positives = 276/320 (86%)
Query: 66 MYARPWQRVNDFYLNAVLGNLSLPLLFGAEKIHDHNNEPGIPAVSDKPEFESVASRGRGG 125
MYARPWQRV+DFYLN V NLSLPLLFGA+ + +N+ GI A+SD E ESVA+ R G
Sbjct: 1 MYARPWQRVDDFYLNIVRANLSLPLLFGAQTLVVDHNDTGIAALSDTCELESVATEDRSG 60
Query: 126 RWARLTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGS 185
R AR TFKI+LSYHGGSFDGWQKQPGLNTVQS++EG LG FVDE KTQ LKD GLPIEG
Sbjct: 61 RRARTTFKIILSYHGGSFDGWQKQPGLNTVQSIVEGSLGKFVDEKKTQLLKDNGLPIEGC 120
Query: 186 VTVAGRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNF 245
VAGRTDKGVT LQQVCSFYTWKKDVKPRDIEDAI HA PGK RVISVSEVSR FHPNF
Sbjct: 121 AVVAGRTDKGVTGLQQVCSFYTWKKDVKPRDIEDAINHATPGKFRVISVSEVSRVFHPNF 180
Query: 246 SAKWRRYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKV 305
SAKWRRYLYIFPLT+G Y DQS+ +G F+++ + NEIHDS+SKD+LEN KSYMFS SKV
Sbjct: 181 SAKWRRYLYIFPLTNGRYTDQSNDNGHFYNSCKYNEIHDSASKDELENGKKSYMFSTSKV 240
Query: 306 NRLLQKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIE 365
NRLL+KLEGKLLSYKMFARDTKASRN+GPPTECF+YHARA+E + P D+ EET+VMC+E
Sbjct: 241 NRLLRKLEGKLLSYKMFARDTKASRNDGPPTECFVYHARAMEVKPPTTDHGEETKVMCVE 300
Query: 366 LVANRFLRRMVRVLVATSIR 385
LVA+RFLR+MVRVLVATSIR
Sbjct: 301 LVADRFLRKMVRVLVATSIR 320
>F6HT31_VITVI (tr|F6HT31) tRNA pseudouridine synthase OS=Vitis vinifera
GN=VIT_02s0012g02420 PE=3 SV=1
Length = 433
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 240/377 (63%), Positives = 275/377 (72%), Gaps = 22/377 (5%)
Query: 34 MDNHRETENYAHYNHTDPCKHARWNARESYEFMYARPWQRVNDFYLNAVLGNLSLPLLFG 93
M+N +E + Y HY HT P K +RW ARES++FMY RPWQ+V DFY N V G SL L G
Sbjct: 14 MENEKENKVYVHYTHTHPTKFSRWTARESHQFMYKRPWQQVLDFYSNVVTGRCSLLGLLG 73
Query: 94 AEKIHDHNNEPGIPAVSDKPEFESVASRGRGGRWARLTFKIVLSYHGGSFDGWQKQPGLN 153
E H+ E I SDK EF +V ++ RGGRWARLTFKIVLSYHG SFDGWQKQPGLN
Sbjct: 74 IETHPIHDGE--IVEASDKTEFGNVLTKDRGGRWARLTFKIVLSYHGASFDGWQKQPGLN 131
Query: 154 TVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKGVTALQQVCSFYTWKKDVK 213
TVQ ++E LG FVDE K QQLK++ LP+EG VTVAGRTDKGVTALQQVCSFYTWKKDVK
Sbjct: 132 TVQGLVEASLGRFVDERKAQQLKEKNLPVEGMVTVAGRTDKGVTALQQVCSFYTWKKDVK 191
Query: 214 PRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYLYIFPLTDGG----------- 262
+DIEDAI AAPGKLRVISVSEVSR FHPNFSAKWR Y YIFPL DG
Sbjct: 192 VQDIEDAINGAAPGKLRVISVSEVSRIFHPNFSAKWRHYFYIFPLNDGDDGEQISENEMD 251
Query: 263 ---------YKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQKLE 313
Y +Q S ++ N E + E+ K FS+S+V++LL++LE
Sbjct: 252 IQKISFNEKYGEQGSECPAQYNGGENTENLIFDDDGEFESRKKPSTFSISRVDQLLRQLE 311
Query: 314 GKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVANRFLR 373
GKLLSYK+FARDTKASRN GPPTECF++HARA EARL +D+ E T+VMCIELVANRFLR
Sbjct: 312 GKLLSYKIFARDTKASRNIGPPTECFVFHARATEARLQFSDDGEGTKVMCIELVANRFLR 371
Query: 374 RMVRVLVATSIREAAAG 390
+MVRVLVATSIREAAAG
Sbjct: 372 KMVRVLVATSIREAAAG 388
>B9SDU2_RICCO (tr|B9SDU2) tRNA pseudouridine synthase OS=Ricinus communis
GN=RCOM_1712560 PE=3 SV=1
Length = 443
Score = 457 bits (1177), Expect = e-126, Method: Compositional matrix adjust.
Identities = 228/362 (62%), Positives = 269/362 (74%), Gaps = 21/362 (5%)
Query: 43 YAHYNHTDPCKHARWNARESYEFMYARPWQRVNDFYLNAVLGNLSLPLLFGAEKIHDHNN 102
Y HYNHTD CK RW ARES++FMYARPWQ V+DFY N V G LS LF ++ +H +
Sbjct: 34 YFHYNHTDSCKSFRWTARESFQFMYARPWQEVSDFYSNVVNGRLSFLELFRSQ-MHFVRD 92
Query: 103 EPGIPAVSDKPEFESVASRGRGGRWARLTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGP 162
+ I S+K E E ++ R GRWAR+ FKI LSYHGGSFDGWQKQPGLNTVQ ++E
Sbjct: 93 DAKIQEDSNKTELEHFSNEDRFGRWARVNFKIDLSYHGGSFDGWQKQPGLNTVQGLVEKS 152
Query: 163 LGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIY 222
LG FVDE K QQLK+ P+EG VAGRTDKGV+AL+QVCSFYTW+KDV+P +IEDAI
Sbjct: 153 LGKFVDEKKAQQLKEACKPLEGCAVVAGRTDKGVSALRQVCSFYTWRKDVRPHEIEDAIN 212
Query: 223 HAAPGKLRVISVSEVSRAFHPNFSAKWRRYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEI 282
+APGK+RVISVSEVSR FHPNFSAKWRRYLYIFP+ DG +QS S E + LR+ E
Sbjct: 213 SSAPGKIRVISVSEVSRVFHPNFSAKWRRYLYIFPINDGEDSEQSFDS-EDLENLRSYEK 271
Query: 283 HD-------------------SSSKDDLENETKSYMFSVSKVNRLLQKLEGKLLSYKMFA 323
+D +S KD+LE K +FS+ +VN+LLQ+LEGKLLSYK+FA
Sbjct: 272 YDEQRNGCAELTSEEHVEELITSDKDELEGAKKPRIFSICRVNQLLQQLEGKLLSYKIFA 331
Query: 324 RDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVANRFLRRMVRVLVATS 383
RDTKASRN GPPTECF+YHARA EARLP D+ E +VMC+ELVANRFLR+MVRVLVATS
Sbjct: 332 RDTKASRNVGPPTECFIYHARATEARLPCPDHGEGRKVMCVELVANRFLRKMVRVLVATS 391
Query: 384 IR 385
IR
Sbjct: 392 IR 393
>B9N838_POPTR (tr|B9N838) tRNA pseudouridine synthase OS=Populus trichocarpa
GN=POPTRDRAFT_786197 PE=3 SV=1
Length = 428
Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust.
Identities = 232/378 (61%), Positives = 275/378 (72%), Gaps = 33/378 (8%)
Query: 43 YAHYNHTDPCKHARWNARESYEFMYARPWQRVNDFYLNAVLGNLSLPLLFGAE------- 95
Y YNHTD CK +RW ARES++FM+ARPWQ V DFY +V G LSL LFG +
Sbjct: 9 YVQYNHTDSCKFSRWTARESFQFMHARPWQEVVDFYSKSVNGQLSLLELFGTQVFFTMEL 68
Query: 96 -KIHDHNNEPGIPAVSDKPEF-ESVASRGRGGRWARLTFKIVLSYHGGSFDGWQKQPGLN 153
K HD + + I VS++ E V++ + GRWAR+TFKIVLSYHGGSFDGWQKQPGLN
Sbjct: 69 KKAHDVHCDDKIEEVSNETGLLEGVSNVDKSGRWARVTFKIVLSYHGGSFDGWQKQPGLN 128
Query: 154 TVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKGVTALQQVCSFYTWKKDVK 213
TVQ ++E LG FVDE K QQLK++ P+EG +VAGRTDKGV+ALQQVCSFYTW+KDVK
Sbjct: 129 TVQGLVEKSLGRFVDEKKAQQLKEQCKPLEGCASVAGRTDKGVSALQQVCSFYTWRKDVK 188
Query: 214 PRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYLYIFPLTDG------------ 261
P +IEDAI APGK+RV S+SEVSRAFHPNFSAKWRRYLYIFPL DG
Sbjct: 189 PHEIEDAINDVAPGKVRVESISEVSRAFHPNFSAKWRRYLYIFPLNDGENREEIEGEGGI 248
Query: 262 -------GYKDQSSGSGEFF--DTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQKL 312
+ Q + GE + + N+ I D +D+L+ K FSV +VN+LLQ+L
Sbjct: 249 ENFSSHENCEKQRNECGELASEENVENSIISD---EDELQGAKKPRSFSVCRVNQLLQQL 305
Query: 313 EGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVANRFL 372
EGKLLSYKMFARDTKASRN GPPTECFLYHARA E RLP D+++ RVMC+EL+ANRFL
Sbjct: 306 EGKLLSYKMFARDTKASRNVGPPTECFLYHARATETRLPSPDHEKGIRVMCVELIANRFL 365
Query: 373 RRMVRVLVATSIREAAAG 390
R+MVRVLVATS+REAAAG
Sbjct: 366 RKMVRVLVATSVREAAAG 383
>M5XEM7_PRUPE (tr|M5XEM7) Uncharacterized protein OS=Prunus persica
GN=PRUPE_ppa006478mg PE=4 SV=1
Length = 409
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 225/368 (61%), Positives = 262/368 (71%), Gaps = 33/368 (8%)
Query: 39 ETENYAHYNHTDPCKHARWNARESYEFMYARPWQRVNDFYLNAVLGNLSLPLLFGA---E 95
E + YNHTDPC ARW +E ++FM ARPWQ+V DFY + V L L G
Sbjct: 2 ENKVLIQYNHTDPCSFARWTTKECFQFMSARPWQQVMDFYSDVVKDRKPLSALLGKACLS 61
Query: 96 KIHDHNNEPGIPAVSDKPEFESVASRGRGGRWARLTFKIVLSYHGGSFDGWQKQPGLNTV 155
K + +N +P DK GGRWARLTFKIV+SYHGGSFDGWQ+QPGLNTV
Sbjct: 62 KSNINNRLESLPPSQDK-----------GGRWARLTFKIVVSYHGGSFDGWQRQPGLNTV 110
Query: 156 QSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKGVTALQQVCSFYTWKKDVKPR 215
QSV+E LG FVDE K Q LKD+GLP+EG+ VAGRTDKGVTA+ QVCSFYTW+KDVK +
Sbjct: 111 QSVVEKSLGKFVDERKAQMLKDKGLPLEGAALVAGRTDKGVTAVHQVCSFYTWRKDVKSQ 170
Query: 216 DIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYLYIFPLTDGGYKDQSSGSGE--- 272
DI DAI AAPGKLRV+SV+EVSRAFHPNF+AKWR YLYIFP D +QS+ SGE
Sbjct: 171 DITDAINSAAPGKLRVVSVTEVSRAFHPNFTAKWRHYLYIFPFNDEEDMEQSNQSGENAQ 230
Query: 273 FFDTLRNNEIHDS---------------SSKDDLENETKSYMFSVSKVNRLLQKLEGKLL 317
F +L N H + + +DLE K F+VS+VN+LLQKLEGKLL
Sbjct: 231 NFKSLENYHEHKNGCDQCNEANVGNLVINDNEDLET-LKPREFTVSRVNQLLQKLEGKLL 289
Query: 318 SYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVANRFLRRMVR 377
SYKMFARDTK SRNEGPPTECFLYHARA E++LP +++++ RVMCIELVANRFLRRMVR
Sbjct: 290 SYKMFARDTKPSRNEGPPTECFLYHARAKESKLPCSEHEKGRRVMCIELVANRFLRRMVR 349
Query: 378 VLVATSIR 385
VLVATSIR
Sbjct: 350 VLVATSIR 357
>R0F4N3_9BRAS (tr|R0F4N3) Uncharacterized protein OS=Capsella rubella
GN=CARUB_v10004903mg PE=4 SV=1
Length = 421
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 222/373 (59%), Positives = 264/373 (70%), Gaps = 28/373 (7%)
Query: 43 YAHYNHTDPCKHARWNARESYEFMYARPWQRVNDFYLNAVLGNLSLPLLFGAEK--IHDH 100
Y HY+H D C ARWNARE++ FMY RPWQ V DFY NAV GN S+ LF +K +HD
Sbjct: 7 YVHYHHADACSKARWNARETFRFMYDRPWQHVLDFYSNAVEGNTSVLNLFQPKKHLVHDD 66
Query: 101 NNEPGIPAVSDKPEFESVASR-GRGGRWARLTFKIVLSYHGGSFDGWQKQPGLNTVQSVI 159
GIP S E E+ + GR GRW R+ FKIVLSY+G SFDGWQKQP L+TVQ V+
Sbjct: 67 GITEGIPLES---ELETSTRKDGRSGRWERVNFKIVLSYNGTSFDGWQKQPDLHTVQGVV 123
Query: 160 EGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKGVTALQQVCSFYTWKKDVKPRDIED 219
E LG FVDE K Q LK + P+EG V VAGRTDKGV+AL QVCSFYTW+KD++P IED
Sbjct: 124 EKSLGEFVDEKKAQLLKKKCKPLEGRVLVAGRTDKGVSALNQVCSFYTWRKDIEPIAIED 183
Query: 220 AIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYLYIFPLTD------GGYKDQSSGSGEF 273
AI A GKL+V+S+S+VSR+FHPNFSAKWRRYLYIFPL D GG ++ E
Sbjct: 184 AINKDASGKLKVVSISKVSRSFHPNFSAKWRRYLYIFPLDDIEPLCEGGKNHENYIFDEN 243
Query: 274 FDTLRNNEIHDS-------SSKDDLENETKSYM---------FSVSKVNRLLQKLEGKLL 317
+ RN + + S D+LE E S FSVSKV+++LQ+L+GK+L
Sbjct: 244 HEKQRNGLLSEENTEEVVLSEDDELEIEETSKELQVVEKPSDFSVSKVDQILQQLQGKVL 303
Query: 318 SYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVANRFLRRMVR 377
SYKMFARDTKA+RNEGPPTECF+YHARA E +L +D+ E RVMC+ELVANRFLR+MVR
Sbjct: 304 SYKMFARDTKAARNEGPPTECFMYHARAAEIKLSCSDHVEGRRVMCVELVANRFLRKMVR 363
Query: 378 VLVATSIREAAAG 390
VLVATSIREAAAG
Sbjct: 364 VLVATSIREAAAG 376
>D7MHR9_ARALL (tr|D7MHR9) tRNA pseudouridine synthase OS=Arabidopsis lyrata
subsp. lyrata GN=ARALYDRAFT_915667 PE=3 SV=1
Length = 420
Score = 419 bits (1077), Expect = e-115, Method: Compositional matrix adjust.
Identities = 221/374 (59%), Positives = 260/374 (69%), Gaps = 30/374 (8%)
Query: 43 YAHYNHTDPCKHARWNARESYEFMYARPWQRVNDFYLNAVLGNLSLPLLFGAEK--IHDH 100
Y HY+H D C ARWNARE++ FMY RPW+ V DFY NAV GNLS+ LF +K +HD
Sbjct: 6 YVHYHHADACSKARWNARETFRFMYDRPWKHVLDFYSNAVEGNLSVLNLFQPKKSLVHDD 65
Query: 101 --NNEPGIPAVSDKPEFESVASRGRGGRWARLTFKIVLSYHGGSFDGWQKQPGLNTVQSV 158
N E + S+ S GR GRW R+ FKIVLSY+G SFDGWQKQP L+TVQ V
Sbjct: 66 GINEEMSLETESET----STRKDGRSGRWERVNFKIVLSYNGTSFDGWQKQPDLHTVQGV 121
Query: 159 IEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKGVTALQQVCSFYTWKKDVKPRDIE 218
+E LG FVD+ K Q LK + P+EG V VAGRTDKGV+AL QVCSFYTW+KD++P IE
Sbjct: 122 VEKSLGGFVDDRKAQLLKKKCKPLEGRVLVAGRTDKGVSALNQVCSFYTWRKDIEPIAIE 181
Query: 219 DAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYLYIFPLTDGGYKDQSSGSGEFFDTLR 278
DAI A GKLRV+S+S+VSR+FHPNFSAKWRRYLYIFPL D +S + E F
Sbjct: 182 DAINKDASGKLRVVSISKVSRSFHPNFSAKWRRYLYIFPLDDAESLHESGENHENFIFDE 241
Query: 279 NNEIHDS-------------SSKDDLENE---------TKSYMFSVSKVNRLLQKLEGKL 316
N+E + S D+LE E K FSV KV++LLQ+L+GK+
Sbjct: 242 NHEKQRNGLLSEENTEEVILSEDDELEIEETSNGLEVVEKPSDFSVIKVDQLLQQLQGKV 301
Query: 317 LSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVANRFLRRMV 376
LSYKMFARDTKA+RNEGPPTECF+YHARA E RL +D E RVMC+ELVANRFLR+MV
Sbjct: 302 LSYKMFARDTKAARNEGPPTECFMYHARAAEIRLSCSDCVEGRRVMCVELVANRFLRKMV 361
Query: 377 RVLVATSIREAAAG 390
RVLVATSIREAAAG
Sbjct: 362 RVLVATSIREAAAG 375
>Q8GUL5_ARATH (tr|Q8GUL5) tRNA pseudouridine synthase OS=Arabidopsis thaliana
GN=AT5G35400 PE=2 SV=1
Length = 420
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 220/368 (59%), Positives = 258/368 (70%), Gaps = 28/368 (7%)
Query: 43 YAHYNHTDPCKHARWNARESYEFMYARPWQRVNDFYLNAVLGNLSLPLLFGAEKIHDHNN 102
Y HY+H D C ARWNARE++ FMY RPWQ V DFY NAV GNLS+ LF +K H++
Sbjct: 6 YVHYHHADACSKARWNARETFRFMYDRPWQHVLDFYSNAVEGNLSVLSLFQPKKSLVHDD 65
Query: 103 EPGIPA---VSDKPEFESVASRGRGGRWARLTFKIVLSYHGGSFDGWQKQPGLNTVQSVI 159
GI + +PE S GR GRW R+ FKIVLSY+G SFDGWQKQP L+TVQ V+
Sbjct: 66 --GITEEMLLESEPE-TSTRKDGRSGRWERVNFKIVLSYNGASFDGWQKQPDLHTVQGVV 122
Query: 160 EGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKGVTALQQVCSFYTWKKDVKPRDIED 219
E LG FVDE K Q LK + P+EG V VAGRTDKGV+AL QVCSFYTW+KD++P IED
Sbjct: 123 EKSLGGFVDERKAQLLKKKCKPLEGRVLVAGRTDKGVSALNQVCSFYTWRKDIEPIAIED 182
Query: 220 AIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYLYIFPLTDGGYKDQSSGSGEFF----- 274
AI A GKLRV+S+S+VSR+FHPNFSAKWRRYLYIFPL D +S + E F
Sbjct: 183 AINKDASGKLRVVSISKVSRSFHPNFSAKWRRYLYIFPLDDAEPLRKSGENHENFIFDEN 242
Query: 275 -----DTLRNNEIHDS---SSKDDLENETKSYM---------FSVSKVNRLLQKLEGKLL 317
+ L + EI + S D+LE E S FSVSKV++LLQ L+GK+L
Sbjct: 243 KKKQRNGLLSEEIAEEVIMSEDDELEIEETSNALEVVEKPSDFSVSKVDQLLQHLQGKVL 302
Query: 318 SYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVANRFLRRMVR 377
SYKMFARDTKA+RNEGPPTECF+YHARA E RL +D E RVMC+ELVANRFLR+MVR
Sbjct: 303 SYKMFARDTKAARNEGPPTECFMYHARAAEIRLSSSDCVEGRRVMCVELVANRFLRKMVR 362
Query: 378 VLVATSIR 385
VLVATSIR
Sbjct: 363 VLVATSIR 370
>I1GVV0_BRADI (tr|I1GVV0) tRNA pseudouridine synthase OS=Brachypodium distachyon
GN=BRADI1G31737 PE=3 SV=1
Length = 410
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 209/365 (57%), Positives = 257/365 (70%), Gaps = 21/365 (5%)
Query: 33 SMDNHRETENYAHYNHTDPCKHARWNARESYEFMYARPWQRVNDFYLNAV---LGNLSLP 89
S+ E + Y YNHTD C+H RW A+ESYE+M+ARPW RV DFY V G L
Sbjct: 14 SVSTAAERDEYPQYNHTDACRHLRWTAKESYEYMHARPWSRVVDFYAMLVRTGAGTAGLA 73
Query: 90 LLF-GAEKIHDHNNEPGIPAVSDKPEFESVASRGRGGRWARLTFKIVLSYHGGSFDGWQK 148
+F EK H + S + + +S+ RGGRW RL FKIVLSYHGGSFDGWQK
Sbjct: 74 EMFRKDEKDHISGTDGEDFETSSEKQMAVASSKARGGRWERLNFKIVLSYHGGSFDGWQK 133
Query: 149 QPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKGVTALQQVCSFYTW 208
QP LNTVQ ++E LG FVDE K +QL++R LPIEG TVAGRTDKGVTALQQVCSFYTW
Sbjct: 134 QPDLNTVQGLVEKHLGQFVDERKAKQLQERSLPIEGCATVAGRTDKGVTALQQVCSFYTW 193
Query: 209 KKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYLYIFPLTDGGYKDQSS 268
+ DVKP DI+D I AAP KL+ + VSEVSR FHPNFSAKWR+YLYIFPL +D
Sbjct: 194 RNDVKPSDIKDTINEAAPDKLKSLFVSEVSRQFHPNFSAKWRKYLYIFPLD----QDAEP 249
Query: 269 GSG-EFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQKLEGKLLSYKMFARDTK 327
SG E + N ++ + + F V+KV+++++KLEGKLLSYK+FARDT+
Sbjct: 250 ISGKELSSIILENPEYNVTCRS----------FDVAKVDKIIRKLEGKLLSYKIFARDTQ 299
Query: 328 ASRNEGPPTECFLYHARAIEARLPLADND--EETRVMCIELVANRFLRRMVRVLVATSIR 385
ASR++GP TECF++H+RA ++L AD + E T+VMCIELVA+RFLR+MVRVLVAT+IR
Sbjct: 300 ASRSDGPATECFMFHSRAAVSKLYSADENFKEGTKVMCIELVADRFLRKMVRVLVATAIR 359
Query: 386 EAAAG 390
EAAAG
Sbjct: 360 EAAAG 364
>M4F387_BRARP (tr|M4F387) tRNA pseudouridine synthase OS=Brassica rapa subsp.
pekinensis GN=Bra035537 PE=3 SV=1
Length = 411
Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust.
Identities = 225/370 (60%), Positives = 264/370 (71%), Gaps = 31/370 (8%)
Query: 43 YAHYNHTDPCKHARWNARESYEFMYARPWQRVNDFYLNAVLGNLSLPLLFGAEKI--HDH 100
YAHY+H D C ARWN RE++ FMY RPWQ V DFY NAV LS+ LF KI HD
Sbjct: 6 YAHYHHGDACSKARWNTRETFRFMYDRPWQHVLDFYSNAVARKLSVLNLFEPNKILAHDD 65
Query: 101 NNEPGIPAVSDKPEFESVASR-GRGGRWARLTFKIVLSYHGGSFDGWQKQPGLNTVQSVI 159
G+P + E E+ + GR GRW R+ FKI+LSY+G SFDGWQKQP L+TVQSV+
Sbjct: 66 GEREGMPL---ETELETCGRKDGRTGRWERVNFKILLSYNGASFDGWQKQPDLHTVQSVV 122
Query: 160 EGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKGVTALQQVCSFYTWKKDVKPRDIED 219
E LG FVDE K Q LK + P+EG V VAGRTDKGV+AL QVCSFYTW+KD++P DIED
Sbjct: 123 EKSLGAFVDEKKAQLLKKKCKPLEGRVLVAGRTDKGVSALNQVCSFYTWRKDIEPIDIED 182
Query: 220 AIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYLYIFPLTDGGYKDQSSGSGEFFDTL-- 277
AI A GKLRV+SVS+VSR FHPNFSAKWRRYLYIFPL D + GSG+ + L
Sbjct: 183 AINKDASGKLRVVSVSKVSREFHPNFSAKWRRYLYIFPL------DHACGSGKDRENLIF 236
Query: 278 -------RNNEIHDSSSK------DDLENE----TKSYMFSVSKVNRLLQKLEGKLLSYK 320
RN + + +++ D+LE E K FSVSKV++LLQ+L+GKLLSYK
Sbjct: 237 DENLGKQRNGLLSEENTEGVGEKDDELETEEVDGAKPSDFSVSKVDQLLQQLQGKLLSYK 296
Query: 321 MFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVANRFLRRMVRVLV 380
MFARD KA+RNEGPPTECF+YHARA E RLP + E RVMC+ELVANRFLR+MVRVLV
Sbjct: 297 MFARDLKAARNEGPPTECFMYHARAAEIRLPSPEYVEGRRVMCVELVANRFLRKMVRVLV 356
Query: 381 ATSIREAAAG 390
ATSIREAAAG
Sbjct: 357 ATSIREAAAG 366
>M0VMG5_HORVD (tr|M0VMG5) tRNA pseudouridine synthase OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 417
Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust.
Identities = 206/355 (58%), Positives = 250/355 (70%), Gaps = 24/355 (6%)
Query: 39 ETENYAHYNHTDPCKHARWNARESYEFMYARPWQRVNDFYLNAV---LGNLSLPLLF-GA 94
E + YA YNHTD C+H RW ARESYE+MYARPW RV DFY V G L LF
Sbjct: 28 ERDGYAQYNHTDACQHLRWTARESYEYMYARPWSRVVDFYAELVRTGAGAAGLAELFRKD 87
Query: 95 EKIHDHNNEPGIPAVSDKPEFESVASRGRGGRWARLTFKIVLSYHGGSFDGWQKQPGLNT 154
EK H + P S + + +S+GRGGRW R FKIVLSYHGGSFDGWQKQP LNT
Sbjct: 88 EKDHTRDTNGEEPLASSEEQMSVKSSKGRGGRWERANFKIVLSYHGGSFDGWQKQPALNT 147
Query: 155 VQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKGVTALQQVCSFYTWKKDVKP 214
VQ ++E LG FVDE K +QL++R LP+EG TVAGRTDKGVTALQQVCSFYTW+KD++P
Sbjct: 148 VQGLVEKHLGQFVDERKAKQLQERSLPVEGCATVAGRTDKGVTALQQVCSFYTWRKDIQP 207
Query: 215 RDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYLYIFPLTDGGYKDQSSGSGEFF 274
DI+D+I AAP K++ + VSEVSR FHPNFSAKWRRYLYIFPL + D SG+
Sbjct: 208 DDIKDSINEAAPDKIKSLVVSEVSREFHPNFSAKWRRYLYIFPLDE----DAKPISGDEL 263
Query: 275 DT--LRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQKLEGKLLSYKMFARDTKASRNE 332
+ L N E S S F V+KV++++++LEGK+LSYK+FARDT+ASR++
Sbjct: 264 SSMILENPEYKASRS------------FDVAKVDKIIRQLEGKMLSYKIFARDTQASRSD 311
Query: 333 GPPTECFLYHARAIEARLPLADND--EETRVMCIELVANRFLRRMVRVLVATSIR 385
GP ECF++H+RA +L AD + E VMCIELVANRFLR+MVRVLVAT+IR
Sbjct: 312 GPAAECFMFHSRAALTKLYSADENCKEGATVMCIELVANRFLRKMVRVLVATTIR 366
>K3XX61_SETIT (tr|K3XX61) tRNA pseudouridine synthase OS=Setaria italica
GN=Si006519m.g PE=3 SV=1
Length = 422
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 204/353 (57%), Positives = 246/353 (69%), Gaps = 20/353 (5%)
Query: 39 ETENYAHYNHTDPCKHARWNARESYEFMYARPWQRVNDFYLNAV---LGNLSLPLLFGA- 94
E + + HY HTD C H RW A+ESYE+MYARPW RV DFY V G L LFG
Sbjct: 33 ERDEHVHYKHTDACHHLRWTAKESYEYMYARPWSRVVDFYAELVRTGAGAAGLAKLFGKD 92
Query: 95 EKIHDHNNEPGIPAVSDKPEFESVASRGRGGRWARLTFKIVLSYHGGSFDGWQKQPGLNT 154
EK + + + + +++S+ RGGRW R+TFKIVLSYHGGSFDGWQKQPGLNT
Sbjct: 93 EKDYSLDTTGENYLAPSEKQTATISSKDRGGRWERVTFKIVLSYHGGSFDGWQKQPGLNT 152
Query: 155 VQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKGVTALQQVCSFYTWKKDVKP 214
VQ ++E LG FVDE K +QL+ R LPIEG VAGRTDKGVTALQQVCSFYTW+KDVK
Sbjct: 153 VQGLVEKHLGQFVDERKAKQLEARSLPIEGGAIVAGRTDKGVTALQQVCSFYTWRKDVKS 212
Query: 215 RDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYLYIFPLTDGGYKDQSSGSGEFF 274
DI+DAI AAP KL+ + VSEV+R FHPNF+AKWRRY+YIFPL + G E
Sbjct: 213 EDIKDAIKEAAPDKLKPLHVSEVAREFHPNFAAKWRRYMYIFPLDEDAKSIIGEGHSE-- 270
Query: 275 DTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQKLEGKLLSYKMFARDTKASRNEGP 334
L+N+ E+ K F V+KV+ +L+KL GK LSYKMFARDT+ASR+ GP
Sbjct: 271 -VLKNS-----------EHIIKPQSFDVAKVDEILRKLAGKTLSYKMFARDTQASRSVGP 318
Query: 335 PTECFLYHARAIEARLPLADND--EETRVMCIELVANRFLRRMVRVLVATSIR 385
PTECF++H+RA A+L A+ D E VMC+ELVANRFLR+MVRVLVAT+IR
Sbjct: 319 PTECFMFHSRAAAAKLYCANEDYKEGLSVMCVELVANRFLRKMVRVLVATAIR 371
>I1Q4D2_ORYGL (tr|I1Q4D2) tRNA pseudouridine synthase OS=Oryza glaberrima PE=3
SV=1
Length = 422
Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust.
Identities = 205/353 (58%), Positives = 246/353 (69%), Gaps = 24/353 (6%)
Query: 39 ETENYAHYNHTDPCKHARWNARESYEFMYARPWQRVNDFYLNAV---LGNLSLPLLFGAE 95
E + +AHYNHTD C H RW A+ESYE+MYARPW RV DFY V G L LFG +
Sbjct: 31 EGDEHAHYNHTDACHHLRWTAKESYEYMYARPWSRVVDFYAELVRTGAGAAGLADLFGKD 90
Query: 96 K---IHDHNNEPGIPAVSDKPEFESVASRGRGGRWARLTFKIVLSYHGGSFDGWQKQPGL 152
+ D N E ++ +S S+ RGGRW R+TFKIVLSYHGGSFDGWQKQPGL
Sbjct: 91 ENGYSLDTNGEDYTAPSENQTSTKS--SKDRGGRWERVTFKIVLSYHGGSFDGWQKQPGL 148
Query: 153 NTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKGVTALQQVCSFYTWKKDV 212
NTVQ ++E LG FVDE K +QL+ R LP+EG VAGRTDKGVTALQQVCSFYTW+KDV
Sbjct: 149 NTVQGLVEKHLGQFVDEKKAKQLEARSLPLEGCAVVAGRTDKGVTALQQVCSFYTWRKDV 208
Query: 213 KPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYLYIFPLTDGGYKDQSSGSGE 272
K DI+DAI AAP KLR + VS+VSR FHPNF+AKWRRYLYIFPL +
Sbjct: 209 KSSDIKDAINKAAPDKLRPLHVSQVSREFHPNFAAKWRRYLYIFPLDEDV---------- 258
Query: 273 FFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQKLEGKLLSYKMFARDTKASRNE 332
L + E + + + E K F V KV++++++LEGK LSYKMFARDT+ASR+
Sbjct: 259 ---KLISGEEQSAKTVEGPECNIKPQSFDVGKVDKIIRQLEGKSLSYKMFARDTQASRSV 315
Query: 333 GPPTECFLYHARAIEARLPLADNDEE---TRVMCIELVANRFLRRMVRVLVAT 382
GPPTECF++H+RA A+L AD + E TR +CIELVANRFLR+MVRVLVAT
Sbjct: 316 GPPTECFMFHSRAAVAKLHTADENCEEGTTRAICIELVANRFLRKMVRVLVAT 368
>Q654A2_ORYSJ (tr|Q654A2) tRNA pseudouridine synthase OS=Oryza sativa subsp.
japonica GN=OSJNBb0065C04.26 PE=2 SV=1
Length = 495
Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust.
Identities = 205/353 (58%), Positives = 246/353 (69%), Gaps = 24/353 (6%)
Query: 39 ETENYAHYNHTDPCKHARWNARESYEFMYARPWQRVNDFYLNAV---LGNLSLPLLFGAE 95
E + +AHYNHTD C H RW A+ESYE+MYARPW RV DFY V G L LFG +
Sbjct: 26 EGDEHAHYNHTDACHHLRWTAKESYEYMYARPWSRVVDFYAELVRTGAGAAGLADLFGKD 85
Query: 96 K---IHDHNNEPGIPAVSDKPEFESVASRGRGGRWARLTFKIVLSYHGGSFDGWQKQPGL 152
+ D N E ++ +S S+ RGGRW R+TFKIVLSYHGGSFDGWQKQPGL
Sbjct: 86 ENGYSLDTNGEDYTAPSENQTSTKS--SKDRGGRWERVTFKIVLSYHGGSFDGWQKQPGL 143
Query: 153 NTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKGVTALQQVCSFYTWKKDV 212
NTVQ ++E LG FVDE K +QL+ R LP+EG VAGRTDKGVTALQQVCSFYTW+KDV
Sbjct: 144 NTVQGLVEKHLGQFVDEKKAKQLEARSLPLEGCAVVAGRTDKGVTALQQVCSFYTWRKDV 203
Query: 213 KPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYLYIFPLTDGGYKDQSSGSGE 272
K DI+DAI AAP KLR + VS+VSR FHPNF+AKWRRYLYIFPL +
Sbjct: 204 KSSDIKDAINKAAPDKLRPLHVSQVSREFHPNFAAKWRRYLYIFPLDEDV---------- 253
Query: 273 FFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQKLEGKLLSYKMFARDTKASRNE 332
L + E + + + E K F V KV++++++LEGK LSYKMFARDT+ASR+
Sbjct: 254 ---KLISGEEQSAKTVEGPECNIKPQSFDVGKVDKIIRQLEGKSLSYKMFARDTQASRSV 310
Query: 333 GPPTECFLYHARAIEARLPLADNDEE---TRVMCIELVANRFLRRMVRVLVAT 382
GPPTECF++H+RA A+L AD + E TR +CIELVANRFLR+MVRVLVAT
Sbjct: 311 GPPTECFMFHSRAAVAKLHTADENCEEGTTRAICIELVANRFLRKMVRVLVAT 363
>A3BEB6_ORYSJ (tr|A3BEB6) tRNA pseudouridine synthase OS=Oryza sativa subsp.
japonica GN=OsJ_22255 PE=3 SV=1
Length = 417
Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust.
Identities = 205/353 (58%), Positives = 246/353 (69%), Gaps = 24/353 (6%)
Query: 39 ETENYAHYNHTDPCKHARWNARESYEFMYARPWQRVNDFYLNAV---LGNLSLPLLFGAE 95
E + +AHYNHTD C H RW A+ESYE+MYARPW RV DFY V G L LFG +
Sbjct: 26 EGDEHAHYNHTDACHHLRWTAKESYEYMYARPWSRVVDFYAELVRTGAGAAGLADLFGKD 85
Query: 96 K---IHDHNNEPGIPAVSDKPEFESVASRGRGGRWARLTFKIVLSYHGGSFDGWQKQPGL 152
+ D N E ++ +S S+ RGGRW R+TFKIVLSYHGGSFDGWQKQPGL
Sbjct: 86 ENGYSLDTNGEDYTAPSENQTSTKS--SKDRGGRWERVTFKIVLSYHGGSFDGWQKQPGL 143
Query: 153 NTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKGVTALQQVCSFYTWKKDV 212
NTVQ ++E LG FVDE K +QL+ R LP+EG VAGRTDKGVTALQQVCSFYTW+KDV
Sbjct: 144 NTVQGLVEKHLGQFVDEKKAKQLEARSLPLEGCAVVAGRTDKGVTALQQVCSFYTWRKDV 203
Query: 213 KPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYLYIFPLTDGGYKDQSSGSGE 272
K DI+DAI AAP KLR + VS+VSR FHPNF+AKWRRYLYIFPL +
Sbjct: 204 KSSDIKDAINKAAPDKLRPLHVSQVSREFHPNFAAKWRRYLYIFPLDEDV---------- 253
Query: 273 FFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQKLEGKLLSYKMFARDTKASRNE 332
L + E + + + E K F V KV++++++LEGK LSYKMFARDT+ASR+
Sbjct: 254 ---KLISGEEQSAKTVEGPECNIKPQSFDVGKVDKIIRQLEGKSLSYKMFARDTQASRSV 310
Query: 333 GPPTECFLYHARAIEARLPLADNDEE---TRVMCIELVANRFLRRMVRVLVAT 382
GPPTECF++H+RA A+L AD + E TR +CIELVANRFLR+MVRVLVAT
Sbjct: 311 GPPTECFMFHSRAAVAKLHTADENCEEGTTRAICIELVANRFLRKMVRVLVAT 363
>A2YFW6_ORYSI (tr|A2YFW6) tRNA pseudouridine synthase OS=Oryza sativa subsp.
indica GN=OsI_24011 PE=2 SV=1
Length = 417
Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust.
Identities = 205/353 (58%), Positives = 246/353 (69%), Gaps = 24/353 (6%)
Query: 39 ETENYAHYNHTDPCKHARWNARESYEFMYARPWQRVNDFYLNAV---LGNLSLPLLFGAE 95
E + +AHYNHTD C H RW A+ESYE+MYARPW RV DFY V G L LFG +
Sbjct: 26 EGDEHAHYNHTDACHHLRWTAKESYEYMYARPWSRVVDFYAELVRTGAGAAGLADLFGKD 85
Query: 96 K---IHDHNNEPGIPAVSDKPEFESVASRGRGGRWARLTFKIVLSYHGGSFDGWQKQPGL 152
+ D N E ++ +S S+ RGGRW R+TFKIVLSYHGGSFDGWQKQPGL
Sbjct: 86 ENGYSLDTNGEDYTAPSENQTSTKS--SKDRGGRWERVTFKIVLSYHGGSFDGWQKQPGL 143
Query: 153 NTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKGVTALQQVCSFYTWKKDV 212
NTVQ ++E LG FVDE K +QL+ R LP+EG VAGRTDKGVTALQQVCSFYTW+KDV
Sbjct: 144 NTVQGLVEKHLGQFVDEKKAKQLEARSLPLEGCAVVAGRTDKGVTALQQVCSFYTWRKDV 203
Query: 213 KPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYLYIFPLTDGGYKDQSSGSGE 272
K DI+DAI AAP KLR + VS+VSR FHPNF+AKWRRYLYIFPL +
Sbjct: 204 KSSDIKDAINKAAPDKLRPLHVSQVSREFHPNFAAKWRRYLYIFPLDEDV---------- 253
Query: 273 FFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQKLEGKLLSYKMFARDTKASRNE 332
L + E + + + E K F V KV++++++LEGK LSYKMFARDT+ASR+
Sbjct: 254 ---KLISGEEQSAKTVEGPECNIKPQSFDVGKVDKIIRQLEGKSLSYKMFARDTQASRSV 310
Query: 333 GPPTECFLYHARAIEARLPLADNDEE---TRVMCIELVANRFLRRMVRVLVAT 382
GPPTECF++H+RA A+L AD + E TR +CIELVANRFLR+MVRVLVAT
Sbjct: 311 GPPTECFMFHSRAAVAKLHTADENCEEGTTRAICIELVANRFLRKMVRVLVAT 363
>J3MGK7_ORYBR (tr|J3MGK7) tRNA pseudouridine synthase OS=Oryza brachyantha
GN=OB06G31510 PE=3 SV=1
Length = 422
Score = 396 bits (1017), Expect = e-108, Method: Compositional matrix adjust.
Identities = 206/350 (58%), Positives = 247/350 (70%), Gaps = 23/350 (6%)
Query: 41 ENYAHYNHTDPCKHARWNARESYEFMYARPWQRVNDFYLNAVL---GNLSLPLLFGAEKI 97
+ + YNHTD C H RW A+ESYE+MYARPW RV DFY V G L LFG ++I
Sbjct: 34 DGHVQYNHTDACHHLRWTAKESYEYMYARPWSRVVDFYAELVCTGAGAAGLADLFGKDEI 93
Query: 98 H---DHNNEPGIPAVSDKPEFESVASRGRGGRWARLTFKIVLSYHGGSFDGWQKQPGLNT 154
D N + P + + S+ RGGRW R+TFKIVLSYHGGSFDGWQKQPGLNT
Sbjct: 94 DYTLDANRDDCTPPSEKQASMKP--SKDRGGRWERVTFKIVLSYHGGSFDGWQKQPGLNT 151
Query: 155 VQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKGVTALQQVCSFYTWKKDVKP 214
VQ ++E LG FVDE K +QL+ R LPIEG VAGRTDKGVTALQQVCSFYTW+KDVK
Sbjct: 152 VQGLVEKHLGQFVDEKKAKQLEARSLPIEGCAIVAGRTDKGVTALQQVCSFYTWRKDVKS 211
Query: 215 RDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYLYIFPLTDGGYKDQSSGSGEFF 274
RDI+DAI A P KLR++ VSEVSR FHPNF+AKWRRYLYIFPL + D SGE
Sbjct: 212 RDIKDAINKATPDKLRLLHVSEVSREFHPNFAAKWRRYLYIFPLDE----DAKPISGE-- 265
Query: 275 DTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQKLEGKLLSYKMFARDTKASRNEGP 334
+ ++I + S E K F+V KV++++++LEGK LSYKMFARDT+ASR+ GP
Sbjct: 266 --EQPSKILEGS-----EYNIKPQSFNVVKVDKIIRQLEGKSLSYKMFARDTQASRSVGP 318
Query: 335 PTECFLYHARAIEARLPLADN--DEETRVMCIELVANRFLRRMVRVLVAT 382
PTECF++H+RA +L AD +E R +CIELVANRFLR+MVRVLVAT
Sbjct: 319 PTECFMFHSRASVVKLHSADENCEEGMRAICIELVANRFLRKMVRVLVAT 368
>F4JZU2_ARATH (tr|F4JZU2) tRNA pseudouridine synthase OS=Arabidopsis thaliana
GN=AT5G35400 PE=2 SV=1
Length = 471
Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust.
Identities = 220/419 (52%), Positives = 258/419 (61%), Gaps = 79/419 (18%)
Query: 43 YAHYNHTDPCKHARWNARESYEFMYARPWQRVNDFYLNAVLGNLSLPLLFGAEKIHDHNN 102
Y HY+H D C ARWNARE++ FMY RPWQ V DFY NAV GNLS+ LF +K H++
Sbjct: 6 YVHYHHADACSKARWNARETFRFMYDRPWQHVLDFYSNAVEGNLSVLSLFQPKKSLVHDD 65
Query: 103 EPGIPA---VSDKPEFESVASRGRGGRWARLTFKIVLSYHGGSFDGWQKQPGLNTVQSVI 159
GI + +PE S GR GRW R+ FKIVLSY+G SFDGWQKQP L+TVQ V+
Sbjct: 66 --GITEEMLLESEPE-TSTRKDGRSGRWERVNFKIVLSYNGASFDGWQKQPDLHTVQGVV 122
Query: 160 EGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKGVTALQQVCSFYTWKKDVKPRDIED 219
E LG FVDE K Q LK + P+EG V VAGRTDKGV+AL QVCSFYTW+KD++P IED
Sbjct: 123 EKSLGGFVDERKAQLLKKKCKPLEGRVLVAGRTDKGVSALNQVCSFYTWRKDIEPIAIED 182
Query: 220 AIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYLYIFPLTDGGYKDQSSGSGEFF----- 274
AI A GKLRV+S+S+VSR+FHPNFSAKWRRYLYIFPL D +S + E F
Sbjct: 183 AINKDASGKLRVVSISKVSRSFHPNFSAKWRRYLYIFPLDDAEPLRKSGENHENFIFDEN 242
Query: 275 -----DTLRNNEIHDS---SSKDDLENETKSYM---------FSVSKVNRLLQKLEGKLL 317
+ L + EI + S D+LE E S FSVSKV++LLQ L+GK+L
Sbjct: 243 KKKQRNGLLSEEIAEEVIMSEDDELEIEETSNALEVVEKPSDFSVSKVDQLLQHLQGKVL 302
Query: 318 SYKMFARDTKASRNEGPPTECFLYHARAIEARLP-------------------------- 351
SYKMFARDTKA+RNEGPPTECF+YHARA E RL
Sbjct: 303 SYKMFARDTKAARNEGPPTECFMYHARAAEIRLSSSVVHFVAWVFGGSIVLVILATEGST 362
Query: 352 -------------------------LADNDEETRVMCIELVANRFLRRMVRVLVATSIR 385
+D E RVMC+ELVANRFLR+MVRVLVATSIR
Sbjct: 363 LDLTDTKLYIASWFLIKRSCEFLFIASDCVEGRRVMCVELVANRFLRKMVRVLVATSIR 421
>K7UHY3_MAIZE (tr|K7UHY3) tRNA pseudouridine synthase OS=Zea mays
GN=ZEAMMB73_642909 PE=3 SV=1
Length = 422
Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust.
Identities = 206/357 (57%), Positives = 247/357 (69%), Gaps = 25/357 (7%)
Query: 39 ETENYAHYNHTDPCKHARWNARESYEFMYARPWQRVNDFYLNAV---LGNLSLPLLFGAE 95
E E + HY HTD C RW A+ESYE+MYARPW RV DFY V G L LFG +
Sbjct: 32 ELEEHVHYKHTDACHQLRWTAKESYEYMYARPWSRVVDFYAELVRAGAGAAGLAKLFGND 91
Query: 96 K----IHDHNNEPGIPAVSDKPEFESVASRGRGGRWARLTFKIVLSYHGGSFDGWQKQPG 151
+ ++ P S+KP + S+GRGGRW R+TFK+V+SYHGGSFDGWQKQPG
Sbjct: 92 EKDYTLYTAGENYLTP--SEKPT-TTTFSKGRGGRWERVTFKVVISYHGGSFDGWQKQPG 148
Query: 152 LNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKGVTALQQVCSFYTWKKD 211
LNTVQ ++E LG FVDE K +QL+ R LPIEG VAGRTDKGVTALQQVCSFYTW+KD
Sbjct: 149 LNTVQGLVEKHLGQFVDERKAKQLEARSLPIEGCAIVAGRTDKGVTALQQVCSFYTWRKD 208
Query: 212 VKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYLYIFPLTDGGYKDQSSGSG 271
VK DI+ AI AAP KL+ + VSEVSR FHPNF+AKWRRY+YIFPL + D G
Sbjct: 209 VKSGDIKGAINEAAPDKLKPLHVSEVSREFHPNFAAKWRRYMYIFPLDEDA--DLILGEA 266
Query: 272 EFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQKLEGKLLSYKMFARDTKASRN 331
+ TL N+ E+ K F VSKV+ +L+ L GK LSYKMFARDT+ASR+
Sbjct: 267 QSSKTLENS-----------EHNIKPQSFDVSKVDEILKPLAGKTLSYKMFARDTQASRS 315
Query: 332 EGPPTECFLYHARAIEARLPLADNDEE--TRVMCIELVANRFLRRMVRVLVATSIRE 386
GPPTECF++H+RA A+L A+ D + VMC+ELVANRFLR+MVRVLVAT+IRE
Sbjct: 316 VGPPTECFMFHSRAAVAKLHSANEDHKGGMVVMCVELVANRFLRKMVRVLVATAIRE 372
>B4FNC8_MAIZE (tr|B4FNC8) tRNA pseudouridine synthase OS=Zea mays PE=2 SV=1
Length = 414
Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust.
Identities = 206/357 (57%), Positives = 247/357 (69%), Gaps = 25/357 (7%)
Query: 39 ETENYAHYNHTDPCKHARWNARESYEFMYARPWQRVNDFYLNAV---LGNLSLPLLFGAE 95
E E + HY HTD C RW A+ESYE+MYARPW RV DFY V G L LFG +
Sbjct: 24 ELEEHVHYKHTDACHQLRWTAKESYEYMYARPWSRVVDFYAELVRAGAGAAGLAKLFGND 83
Query: 96 K----IHDHNNEPGIPAVSDKPEFESVASRGRGGRWARLTFKIVLSYHGGSFDGWQKQPG 151
+ ++ P S+KP + S+GRGGRW R+TFK+V+SYHGGSFDGWQKQPG
Sbjct: 84 EKDYTLYTAGENYLTP--SEKPT-TTTFSKGRGGRWERVTFKVVISYHGGSFDGWQKQPG 140
Query: 152 LNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKGVTALQQVCSFYTWKKD 211
LNTVQ ++E LG FVDE K +QL+ R LPIEG VAGRTDKGVTALQQVCSFYTW+KD
Sbjct: 141 LNTVQGLVEKHLGQFVDERKAKQLEARSLPIEGCAIVAGRTDKGVTALQQVCSFYTWRKD 200
Query: 212 VKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYLYIFPLTDGGYKDQSSGSG 271
VK DI+ AI AAP KL+ + VSEVSR FHPNF+AKWRRY+YIFPL + D G
Sbjct: 201 VKSGDIKGAINEAAPDKLKPLHVSEVSREFHPNFAAKWRRYMYIFPLDEDA--DLILGEA 258
Query: 272 EFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQKLEGKLLSYKMFARDTKASRN 331
+ TL N+ E+ K F VSKV+ +L+ L GK LSYKMFARDT+ASR+
Sbjct: 259 QSSKTLENS-----------EHNIKPQSFDVSKVDEILKPLAGKTLSYKMFARDTQASRS 307
Query: 332 EGPPTECFLYHARAIEARLPLADNDEE--TRVMCIELVANRFLRRMVRVLVATSIRE 386
GPPTECF++H+RA A+L A+ D + VMC+ELVANRFLR+MVRVLVAT+IRE
Sbjct: 308 VGPPTECFMFHSRAAVAKLHSANEDHKGGMVVMCVELVANRFLRKMVRVLVATAIRE 364
>I1GVU9_BRADI (tr|I1GVU9) tRNA pseudouridine synthase OS=Brachypodium distachyon
GN=BRADI1G31737 PE=3 SV=1
Length = 365
Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust.
Identities = 195/355 (54%), Positives = 245/355 (69%), Gaps = 21/355 (5%)
Query: 33 SMDNHRETENYAHYNHTDPCKHARWNARESYEFMYARPWQRVNDFYLNAV---LGNLSLP 89
S+ E + Y YNHTD C+H RW A+ESYE+M+ARPW RV DFY V G L
Sbjct: 14 SVSTAAERDEYPQYNHTDACRHLRWTAKESYEYMHARPWSRVVDFYAMLVRTGAGTAGLA 73
Query: 90 LLF-GAEKIHDHNNEPGIPAVSDKPEFESVASRGRGGRWARLTFKIVLSYHGGSFDGWQK 148
+F EK H + S + + +S+ RGGRW RL FKIVLSYHGGSFDGWQK
Sbjct: 74 EMFRKDEKDHISGTDGEDFETSSEKQMAVASSKARGGRWERLNFKIVLSYHGGSFDGWQK 133
Query: 149 QPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKGVTALQQVCSFYTW 208
QP LNTVQ ++E LG FVDE K +QL++R LPIEG TVAGRTDKGVTALQQVCSFYTW
Sbjct: 134 QPDLNTVQGLVEKHLGQFVDERKAKQLQERSLPIEGCATVAGRTDKGVTALQQVCSFYTW 193
Query: 209 KKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYLYIFPLTDGGYKDQSS 268
+ DVKP DI+D I AAP KL+ + VSEVSR FHPNFSAKWR+YLYIFPL +D
Sbjct: 194 RNDVKPSDIKDTINEAAPDKLKSLFVSEVSRQFHPNFSAKWRKYLYIFPLD----QDAEP 249
Query: 269 GSG-EFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQKLEGKLLSYKMFARDTK 327
SG E + N ++ + + F V+KV+++++KLEGKLLSYK+FARDT+
Sbjct: 250 ISGKELSSIILENPEYNVTCRS----------FDVAKVDKIIRKLEGKLLSYKIFARDTQ 299
Query: 328 ASRNEGPPTECFLYHARAIEARLPLADND--EETRVMCIELVANRFLRRMVRVLV 380
ASR++GP TECF++H+RA ++L AD + E T+VMCIELVA+RFLR++++ V
Sbjct: 300 ASRSDGPATECFMFHSRAAVSKLYSADENFKEGTKVMCIELVADRFLRKVIQQTV 354
>M8B639_AEGTA (tr|M8B639) Protein kinase APK1B, chloroplastic OS=Aegilops
tauschii GN=F775_01875 PE=4 SV=1
Length = 914
Score = 369 bits (947), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 198/338 (58%), Positives = 237/338 (70%), Gaps = 29/338 (8%)
Query: 61 ESYEFMYARPWQRVNDFYLNAV---LGNLSLPLLFGAEKI------HDHNNEPGIPAVSD 111
ESYE+MYARPW RV DFY V G L LF ++I H + P S
Sbjct: 542 ESYEYMYARPWSRVVDFYAELVRTGAGAAGLAELFRKDEIFRPQKDHTRDTNGEEPLTSS 601
Query: 112 KPEFESVASRGRGGRWARLTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENK 171
+ +S+ RGGRW R FKIVLSYHGGSFDGWQKQP LNTVQ ++E LG FVDE K
Sbjct: 602 GKQMSVKSSKARGGRWERANFKIVLSYHGGSFDGWQKQPDLNTVQGLVEKHLGQFVDERK 661
Query: 172 TQQLKDRGLPIEGSVTVAGRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRV 231
+QL++R LPIEG TVAGRTDKGVTALQQVCSFYTW+KDV+P DI+D I AAP K++
Sbjct: 662 AKQLQERSLPIEGCATVAGRTDKGVTALQQVCSFYTWRKDVQPGDIKDTINEAAPDKIKS 721
Query: 232 ISVSEVSRAFHPNFSAKWRRYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDL 291
+ VSEVSR FHPNFSAKWRRYLYIFPL DG D +S S D S L
Sbjct: 722 LVVSEVSREFHPNFSAKWRRYLYIFPL-DG---DATSIS------------EDEQSSTIL 765
Query: 292 EN-ETKS-YMFSVSKVNRLLQKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEAR 349
EN E K+ F V+KV++++++LEGK+LSYK+FARDT+ASR++GP TECF+YH+RA +
Sbjct: 766 ENPELKAPQSFDVAKVDKIIRQLEGKMLSYKIFARDTQASRSDGPATECFMYHSRAAVTK 825
Query: 350 LPLADND--EETRVMCIELVANRFLRRMVRVLVATSIR 385
L AD + E T VMC+ELVANRFLR+MVRVLVAT+IR
Sbjct: 826 LYSADENCKEGTTVMCVELVANRFLRKMVRVLVATTIR 863
>D5AA47_PICSI (tr|D5AA47) tRNA pseudouridine synthase OS=Picea sitchensis PE=2
SV=1
Length = 448
Score = 359 bits (921), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 196/385 (50%), Positives = 252/385 (65%), Gaps = 28/385 (7%)
Query: 30 ISSSMDNHRETENYAHYNHTDPCKHARWNARESYEFMYARPWQRVNDFYLNAVLGNLSLP 89
+ + +DN + + HY+H D C+ RW A+ESY ++Y RPW+ V DFY + G LSL
Sbjct: 24 MRTDVDNEKP---HVHYDHQDDCREFRWTAKESYAYLYDRPWEEVMDFYSHLAAGRLSLS 80
Query: 90 LLFGAEKIHDHNNEP----GIPAVSDKPEFESVASRGRGGRWARLTFKIVLSYHGGSFDG 145
L E + P +P+ + E+ + + +GG+WAR TFKIVLSY G FDG
Sbjct: 81 DLVFHESKKGNVARPYGNAAVPSCTGIL-LENNSKKPKGGKWARRTFKIVLSYDGNLFDG 139
Query: 146 WQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKGVTALQQVCSF 205
WQKQPG+NTVQ ++E LG FVDE K Q+L+ + +E +V VAGRTDKGV+A QQVCSF
Sbjct: 140 WQKQPGMNTVQGLVEKSLGKFVDEKKAQELEAKKASVEAAVAVAGRTDKGVSAFQQVCSF 199
Query: 206 YTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYLYIFPLTDG-GYK 264
YTW+KD DIE I AA GKL+V+S+SEVSR FHPNFSAKWRRYLYI PL DG G K
Sbjct: 200 YTWRKDTSLEDIESEINAAALGKLKVVSISEVSREFHPNFSAKWRRYLYILPLKDGEGNK 259
Query: 265 D-QSSGSGEFFDTL---------------RNNEIHDSSSKDDLENETKSYMFSVSKVNRL 308
GS +D+L N E + S+ + K + F+V VN+L
Sbjct: 260 TVVDGGSPVTYDSLCLADEGGNQSTDMNVINMEAMNISATGKHQASVKPHNFNVDTVNQL 319
Query: 309 LQKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETR---VMCIE 365
LQ+LEG+ LSY++FARDT+ASR+ GP TECF++HARA A LP D ++ VMC+E
Sbjct: 320 LQQLEGQSLSYRIFARDTQASRSRGPATECFMHHARAAVATLPYMGQDHTSKGRTVMCVE 379
Query: 366 LVANRFLRRMVRVLVATSIREAAAG 390
LVANRFLR+MVRVLVAT++REAAAG
Sbjct: 380 LVANRFLRKMVRVLVATAVREAAAG 404
>M0SIE3_MUSAM (tr|M0SIE3) Uncharacterized protein OS=Musa acuminata subsp.
malaccensis PE=4 SV=1
Length = 825
Score = 341 bits (874), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 175/301 (58%), Positives = 212/301 (70%), Gaps = 21/301 (6%)
Query: 107 PAVSDKPEFESVASRGRGGRWARLTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTF 166
P ++ E + S+ R GRW RLTFKIVLSYHGG+FDGWQKQPGL+TVQ ++E LG F
Sbjct: 476 PCGCEETETSTEPSKHRTGRWKRLTFKIVLSYHGGTFDGWQKQPGLHTVQGIVEHFLGRF 535
Query: 167 VDENKTQQLKDRGLPIEGSVTVAGRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAP 226
VDENK +QLK++ +P+EG VAGRTDKGVTALQQVCSFYTW+KDVK DI+D I A P
Sbjct: 536 VDENKAKQLKEKSMPVEGCAVVAGRTDKGVTALQQVCSFYTWRKDVKCEDIKDTINKAVP 595
Query: 227 GKLRVISVSEVSRAFHPNFSAKWRRYLYIFPLTDGGYKDQSSGSGEFF---DTLRNNEIH 283
GKLR + V+EV R FHPNF+AKWRRY YI PL D SS ++ D +++I+
Sbjct: 596 GKLRALHVAEVGRVFHPNFAAKWRRYFYILPLNDNEESIISSSESDWTRTSDGEEDDQIN 655
Query: 284 DSSSKDDLENET----------------KSYMFSVSKVNRLLQKLEGKLLSYKMFARDTK 327
D+ E + K FSVSKV++LL++LEGK LSYKMFARDTK
Sbjct: 656 RLPEGDEKEQQQTFSHVNEDDSPDIVGLKRRSFSVSKVDQLLRELEGKTLSYKMFARDTK 715
Query: 328 ASRNEGPPTECFLYHARAIEARLPLADNDEE--TRVMCIELVANRFLRRMVRVLVATSIR 385
ASR+ GPPTECF++HARA E +LP D RVMC+ELVANRFLR+MVRVLVAT+IR
Sbjct: 716 ASRSIGPPTECFMFHARAAETKLPSDTEDYAYLQRVMCVELVANRFLRKMVRVLVATAIR 775
Query: 386 E 386
E
Sbjct: 776 E 776
>O65241_ARATH (tr|O65241) tRNA pseudouridine synthase OS=Arabidopsis thaliana
GN=T26D22.10 PE=3 SV=1
Length = 364
Score = 304 bits (779), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 182/368 (49%), Positives = 212/368 (57%), Gaps = 84/368 (22%)
Query: 43 YAHYNHTDPCKHARWNARESYEFMYARPWQRVNDFYLNAVLGNLSLPLLFGAEKIHDHNN 102
Y HY+H D C ARWNARE++ FMY RPWQ V DFY NAV GNLS+ LF +K H++
Sbjct: 6 YVHYHHADACSKARWNARETFRFMYDRPWQHVLDFYSNAVEGNLSVLSLFQPKKSLVHDD 65
Query: 103 EPGIPA---VSDKPEFESVASRGRGGRWARLTFKIVLSYHGGSFDGWQKQPGLNTVQSVI 159
GI + +PE S GR GRW R+ FKIVLSY+G SFDGWQKQP L+TVQ V+
Sbjct: 66 --GITEEMLLESEPE-TSTRKDGRSGRWERVNFKIVLSYNGASFDGWQKQPDLHTVQGVV 122
Query: 160 EGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKGVTALQQVCSFYTWKKDVKPRDIED 219
E LG FVDE K Q LK + P+EG V VAGRTDKGV+AL Q
Sbjct: 123 EKSLGGFVDERKAQLLKKKCKPLEGRVLVAGRTDKGVSALNQ------------------ 164
Query: 220 AIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYLYIFPLTDGGYKDQSSGSGEFF----- 274
VSR+FHPNFSAKWRRYLYIFPL D +S + E F
Sbjct: 165 -----------------VSRSFHPNFSAKWRRYLYIFPLDDAEPLRKSGENHENFIFDEN 207
Query: 275 -----DTLRNNEIHDS---SSKDDLENETKSYM---------FSVSKVNRLLQKLEGKLL 317
+ L + EI + S D+LE E S FSVSKV++LLQ L+GK+L
Sbjct: 208 KKKQRNGLLSEEIAEEVIMSEDDELEIEETSNALEVVEKPSDFSVSKVDQLLQHLQGKVL 267
Query: 318 SYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVANRFLRRMVR 377
SYKMFARDTKA+RNEGPPTECF+YHARA E RL + MVR
Sbjct: 268 SYKMFARDTKAARNEGPPTECFMYHARAAEIRLSSS---------------------MVR 306
Query: 378 VLVATSIR 385
VLVATSIR
Sbjct: 307 VLVATSIR 314
>C5Z7C1_SORBI (tr|C5Z7C1) tRNA pseudouridine synthase OS=Sorghum bicolor
GN=Sb10g026490 PE=3 SV=1
Length = 318
Score = 274 bits (701), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 147/272 (54%), Positives = 179/272 (65%), Gaps = 20/272 (7%)
Query: 117 SVASRGRGGRWARLTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLK 176
S +RGRG W+ TF + + P ++E LG FVDE K +QL+
Sbjct: 15 STCTRGRGAGWS--TF---MPSSCAPAPAPRVSPSYLGKMRLVEKHLGQFVDERKAKQLE 69
Query: 177 DRGLPIEGSVTVAGRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSE 236
R LPIEG VAGRTDKGVTALQQVCSFYTW+KDVK DI+DAI AAP KL+ + VSE
Sbjct: 70 ARSLPIEGCAVVAGRTDKGVTALQQVCSFYTWRKDVKSGDIKDAINEAAPDKLKPLHVSE 129
Query: 237 VSRAFHPNFSAKWRRYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETK 296
V R FHPNFSAKWRRY+YIFPL + L E H S ++ E+ K
Sbjct: 130 VPREFHPNFSAKWRRYMYIFPLDEDA-------------NLILGEAHSSKILENSEHNIK 176
Query: 297 SYMFSVSKVNRLLQKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADND 356
F V+KV+++L+ L GK LSYKMFARDT+ASR+ GPPTECF++H+RA A+L A+ D
Sbjct: 177 PQSFDVAKVDKILKTLAGKTLSYKMFARDTQASRSVGPPTECFMFHSRAAVAKLHYANED 236
Query: 357 --EETRVMCIELVANRFLRRMVRVLVATSIRE 386
E VMC+ELVANRFLR+MVRVLVAT+IRE
Sbjct: 237 YKEGMMVMCVELVANRFLRKMVRVLVATAIRE 268
>D8SHG0_SELML (tr|D8SHG0) tRNA pseudouridine synthase (Fragment) OS=Selaginella
moellendorffii GN=SELMODRAFT_117099 PE=3 SV=1
Length = 289
Score = 263 bits (672), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 142/271 (52%), Positives = 174/271 (64%), Gaps = 39/271 (14%)
Query: 120 SRGRGGRWARLTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRG 179
S+ RGGRW R TFKIVLSY G +F GWQKQPG TVQSV+E LG FVD + L+ +G
Sbjct: 2 SKERGGRWERRTFKIVLSYSGTAFAGWQKQPGFLTVQSVLEKQLGRFVDGKRASNLEKQG 61
Query: 180 LPIEGSVTVAGRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSR 239
E V+VAGRTDKGV A QVCSFYTW ++ K D++ A+ A P LR +S SEV+R
Sbjct: 62 KIKEALVSVAGRTDKGVHACGQVCSFYTWMRECKEEDVKSAVNSAMPTILRAVSASEVNR 121
Query: 240 AFHPNFSAKWRRYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYM 299
FHP FSAKWRRY+YIFPL S+D+++
Sbjct: 122 DFHPIFSAKWRRYIYIFPL---------------------------RSRDEID------- 147
Query: 300 FSVSKVNRLLQKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEET 359
VSKV LL+ LEG LSY +FARDTK +R+ GP T C LYHARA A+LP+ + E
Sbjct: 148 --VSKVATLLRGLEGHSLSYAIFARDTKIARSSGPATVCTLYHARAALAKLPVPN---EE 202
Query: 360 RVMCIELVANRFLRRMVRVLVATSIREAAAG 390
VM +ELVA+RFLR+MVRVLV+T+I+EA AG
Sbjct: 203 NVMVVELVADRFLRKMVRVLVSTAIKEAFAG 233
>D8T5Q5_SELML (tr|D8T5Q5) tRNA pseudouridine synthase (Fragment) OS=Selaginella
moellendorffii GN=SELMODRAFT_132613 PE=3 SV=1
Length = 289
Score = 263 bits (672), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 142/271 (52%), Positives = 173/271 (63%), Gaps = 39/271 (14%)
Query: 120 SRGRGGRWARLTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRG 179
S+ RGGRW R TFKIVLSY G +F GWQKQPG TVQSV+E LG FVD + L+ +G
Sbjct: 2 SKERGGRWERRTFKIVLSYSGTAFAGWQKQPGFLTVQSVLEKQLGRFVDGKRASNLEKQG 61
Query: 180 LPIEGSVTVAGRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSR 239
E V+VAGRTDKGV A QVCSFYTW ++ K D++ A+ A P LR +S SEV+R
Sbjct: 62 KIKEALVSVAGRTDKGVHACGQVCSFYTWMRECKEEDVKSAVNSAMPTILRAVSASEVNR 121
Query: 240 AFHPNFSAKWRRYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYM 299
FHP FSAKWRRY+YIFPL S+D+++
Sbjct: 122 DFHPIFSAKWRRYIYIFPL---------------------------RSRDEID------- 147
Query: 300 FSVSKVNRLLQKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEET 359
VSKV LL+ LEG LSY +FARDTK +R+ GP T C LYHARA A+LP + E
Sbjct: 148 --VSKVATLLRALEGHSLSYAIFARDTKIARSSGPATVCTLYHARAALAKLPFPN---EE 202
Query: 360 RVMCIELVANRFLRRMVRVLVATSIREAAAG 390
VM +ELVA+RFLR+MVRVLV+T+I+EA AG
Sbjct: 203 NVMVVELVADRFLRKMVRVLVSTAIKEAFAG 233
>M0VMG2_HORVD (tr|M0VMG2) tRNA pseudouridine synthase OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 199
Score = 216 bits (551), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 105/171 (61%), Positives = 119/171 (69%), Gaps = 4/171 (2%)
Query: 39 ETENYAHYNHTDPCKHARWNARESYEFMYARPWQRVNDFYLNAV---LGNLSLPLLFGA- 94
E + YA YNHTD C+H RW ARESYE+MYARPW RV DFY V G L LF
Sbjct: 28 ERDGYAQYNHTDACQHLRWTARESYEYMYARPWSRVVDFYAELVRTGAGAAGLAELFRKD 87
Query: 95 EKIHDHNNEPGIPAVSDKPEFESVASRGRGGRWARLTFKIVLSYHGGSFDGWQKQPGLNT 154
EK H + P S + + +S+GRGGRW R FKIVLSYHGGSFDGWQKQP LNT
Sbjct: 88 EKDHTRDTNGEEPLASSEEQMSVKSSKGRGGRWERANFKIVLSYHGGSFDGWQKQPALNT 147
Query: 155 VQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKGVTALQQVCSF 205
VQ ++E LG FVDE K +QL++R LP+EG TVAGRTDKGVTALQQVCSF
Sbjct: 148 VQGLVEKHLGQFVDERKAKQLQERSLPVEGCATVAGRTDKGVTALQQVCSF 198
>K4CCE3_SOLLC (tr|K4CCE3) tRNA pseudouridine synthase OS=Solanum lycopersicum
GN=Solyc07g017260.2 PE=3 SV=1
Length = 232
Score = 211 bits (536), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 107/191 (56%), Positives = 128/191 (67%), Gaps = 6/191 (3%)
Query: 21 PTHSRT-RWLISSSMDNHRETENYAHYNHTDPCKHARWNARESYEFMYARPWQRVNDFYL 79
PT RT R L+ +S + + + HYNHTD CK +RW +RE YEFMYARPW +V DFY
Sbjct: 5 PTTVRTLRNLMENSSPTATQQKVHFHYNHTDSCKFSRWTSRECYEFMYARPWHKVVDFYA 64
Query: 80 NAVLGNLSLPLLFGAEKIHDHNNEPGIPAVSDKPEFESV----ASRGRGGRWARLTFKIV 135
+ V G++SL LFG E DH + I +K E ++ SR + GRWAR F IV
Sbjct: 65 DMVKGHISLSGLFGKETPADHEDAE-IREDHEKSELVNIPVKDKSRDKSGRWARANFMIV 123
Query: 136 LSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKG 195
LSYHGGSFDGWQKQP LNTVQ ++E LG FVDE K Q LKD+ LP+E VAGRTDKG
Sbjct: 124 LSYHGGSFDGWQKQPDLNTVQGLVERSLGEFVDEKKAQLLKDKNLPLEACALVAGRTDKG 183
Query: 196 VTALQQVCSFY 206
V+A QQVCSFY
Sbjct: 184 VSASQQVCSFY 194
>M1AKJ9_SOLTU (tr|M1AKJ9) tRNA pseudouridine synthase OS=Solanum tuberosum
GN=PGSC0003DMG401009562 PE=3 SV=1
Length = 232
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 105/191 (54%), Positives = 125/191 (65%), Gaps = 6/191 (3%)
Query: 21 PTHSRT-RWLISSSMDNHRETENYAHYNHTDPCKHARWNARESYEFMYARPWQRVNDFYL 79
PT RT R L+ + + + + HYNHTD CK +RW +RE YEFMYAR W +V DFY
Sbjct: 5 PTTVRTLRNLMENPSQTAAQQKVHFHYNHTDSCKFSRWTSRECYEFMYARLWHKVVDFYA 64
Query: 80 NAVLGNLSLPLLFGAEKIHDHNNEPGIPAVSDKPEFESV----ASRGRGGRWARLTFKIV 135
+ V G+ SL LFG E DH + I +K E ++ SR + GRWAR F IV
Sbjct: 65 DMVKGHTSLSRLFGKETPADHEDAE-IREDHEKSELVNIPVKDKSRDKSGRWARANFMIV 123
Query: 136 LSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKG 195
LSYHGGSFDGWQKQP LNTVQ ++E LG FVDE K Q LKD+ LP+E VAGRTDKG
Sbjct: 124 LSYHGGSFDGWQKQPDLNTVQGLVERSLGEFVDEKKAQLLKDKNLPLEACALVAGRTDKG 183
Query: 196 VTALQQVCSFY 206
V+A QQVCSFY
Sbjct: 184 VSASQQVCSFY 194
>F2CQJ3_HORVD (tr|F2CQJ3) Predicted protein (Fragment) OS=Hordeum vulgare var.
distichum PE=2 SV=1
Length = 221
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 105/188 (55%), Positives = 135/188 (71%), Gaps = 20/188 (10%)
Query: 207 TWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYLYIFPLTDGGYKDQ 266
TW+KD++P DI+D+I AAP K++ + VSEVSR FHPNFSAKWRRYLYIFPL + D
Sbjct: 4 TWRKDIQPGDIKDSINEAAPDKIKSLVVSEVSREFHPNFSAKWRRYLYIFPLDE----DA 59
Query: 267 SSGSGEFFDT--LRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQKLEGKLLSYKMFAR 324
SG+ + L N E S S F V+KV++++++LEGK+LSYK+FAR
Sbjct: 60 KPISGDELSSMILENPEYKASRS------------FDVAKVDKIIRQLEGKMLSYKIFAR 107
Query: 325 DTKASRNEGPPTECFLYHARAIEARLPLADND--EETRVMCIELVANRFLRRMVRVLVAT 382
DT+ASR++GP ECF++H+RA +L AD + E VMCIELVANRFLR+MVRVLVAT
Sbjct: 108 DTQASRSDGPAAECFMFHSRAAVTKLYSADENCKEGATVMCIELVANRFLRKMVRVLVAT 167
Query: 383 SIREAAAG 390
+IREAAAG
Sbjct: 168 TIREAAAG 175
>M0VMG4_HORVD (tr|M0VMG4) Uncharacterized protein OS=Hordeum vulgare var.
distichum PE=4 SV=1
Length = 199
Score = 197 bits (500), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 95/162 (58%), Positives = 110/162 (67%), Gaps = 4/162 (2%)
Query: 39 ETENYAHYNHTDPCKHARWNARESYEFMYARPWQRVNDFYLNAV---LGNLSLPLLFGA- 94
E + YA YNHTD C+H RW ARESYE+MYARPW RV DFY V G L LF
Sbjct: 28 ERDGYAQYNHTDACQHLRWTARESYEYMYARPWSRVVDFYAELVRTGAGAAGLAELFRKD 87
Query: 95 EKIHDHNNEPGIPAVSDKPEFESVASRGRGGRWARLTFKIVLSYHGGSFDGWQKQPGLNT 154
EK H + P S + + +S+GRGGRW R FKIVLSYHGGSFDGWQKQP LNT
Sbjct: 88 EKDHTRDTNGEEPLASSEEQMSVKSSKGRGGRWERANFKIVLSYHGGSFDGWQKQPALNT 147
Query: 155 VQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKGV 196
VQ ++E LG FVDE K +QL++R LP+EG TVAGRTDKG+
Sbjct: 148 VQGLVEKHLGQFVDERKAKQLQERSLPVEGCATVAGRTDKGI 189
>K4CCE2_SOLLC (tr|K4CCE2) Uncharacterized protein OS=Solanum lycopersicum
GN=Solyc07g017250.2 PE=4 SV=1
Length = 196
Score = 167 bits (422), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 94/182 (51%), Positives = 117/182 (64%), Gaps = 20/182 (10%)
Query: 193 DKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRY 252
DK + +L +C TW+KDVK D++ A+ AAPGK+RV+S+++VSR FHPNFSAKWR Y
Sbjct: 14 DKNIGSL--LC-LDTWRKDVKIEDVKAALDKAAPGKIRVVSLTKVSREFHPNFSAKWRHY 70
Query: 253 LYIFPLTD------GG---------YKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKS 297
LYIFP+ D GG Q+ D NEI++ + D L + K
Sbjct: 71 LYIFPIDDVLGEKQGGQIWIDDSTNVHQQNECDKSDVDKSNVNEINNEN--DKLVHGNKP 128
Query: 298 YMFSVSKVNRLLQKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDE 357
F V KVNRLL +LEGKLLSYKMFARDTKASRN GPPTECF++HARAIE +P A
Sbjct: 129 TKFEVGKVNRLLGQLEGKLLSYKMFARDTKASRNIGPPTECFVFHARAIETSIPCAKKRR 188
Query: 358 ET 359
E+
Sbjct: 189 ES 190
>Q0DAC1_ORYSJ (tr|Q0DAC1) Os06g0663100 protein OS=Oryza sativa subsp. japonica
GN=Os06g0663100 PE=2 SV=2
Length = 156
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 71/124 (57%), Positives = 82/124 (66%), Gaps = 8/124 (6%)
Query: 39 ETENYAHYNHTDPCKHARWNARESYEFMYARPWQRVNDFYLNAV---LGNLSLPLLFGAE 95
E + +AHYNHTD C H RW A+ESYE+MYARPW RV DFY V G L LFG +
Sbjct: 34 EGDEHAHYNHTDACHHLRWTAKESYEYMYARPWSRVVDFYAELVRTGAGAAGLADLFGKD 93
Query: 96 KIH---DHNNEPGIPAVSDKPEFESVASRGRGGRWARLTFKIVLSYHGGSFDGWQKQPGL 152
+ D N E ++ +S S+ RGGRW R+TFKIVLSYHGGSFDGWQKQPGL
Sbjct: 94 ENGYSLDTNGEDYTAPSENQTSTKS--SKDRGGRWERVTFKIVLSYHGGSFDGWQKQPGL 151
Query: 153 NTVQ 156
NTVQ
Sbjct: 152 NTVQ 155
>B4FE12_MAIZE (tr|B4FE12) Pseudouridylate synthase isoform 1 OS=Zea mays
GN=ZEAMMB73_642909 PE=2 SV=1
Length = 173
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 71/136 (52%), Positives = 90/136 (66%), Gaps = 15/136 (11%)
Query: 253 LYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQKL 312
+YIFPL + D G + TL N+E + K F VSKV+ +L+ L
Sbjct: 1 MYIFPLDEDA--DLILGEAQSSKTLENSE-----------HNIKPQSFDVSKVDEILKPL 47
Query: 313 EGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEE--TRVMCIELVANR 370
GK LSYKMFARDT+ASR+ GPPTECF++H+RA A+L A+ D + VMC+ELVANR
Sbjct: 48 AGKTLSYKMFARDTQASRSVGPPTECFMFHSRAAVAKLHSANEDHKGGMVVMCVELVANR 107
Query: 371 FLRRMVRVLVATSIRE 386
FLR+MVRVLVAT+IRE
Sbjct: 108 FLRKMVRVLVATAIRE 123
>K7UYR6_MAIZE (tr|K7UYR6) Uncharacterized protein OS=Zea mays GN=ZEAMMB73_642909
PE=4 SV=1
Length = 154
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 68/125 (54%), Positives = 81/125 (64%), Gaps = 10/125 (8%)
Query: 39 ETENYAHYNHTDPCKHARWNARESYEFMYARPWQRVNDFYLNAV---LGNLSLPLLFGAE 95
E E + HY HTD C RW A+ESYE+MYARPW RV DFY V G L LFG +
Sbjct: 32 ELEEHVHYKHTDACHQLRWTAKESYEYMYARPWSRVVDFYAELVRAGAGAAGLAKLFGND 91
Query: 96 K----IHDHNNEPGIPAVSDKPEFESVASRGRGGRWARLTFKIVLSYHGGSFDGWQKQPG 151
+ ++ P S+KP + S+GRGGRW R+TFK+V+SYHGGSFDGWQKQPG
Sbjct: 92 EKDYTLYTAGENYLTP--SEKPT-TTTFSKGRGGRWERVTFKVVISYHGGSFDGWQKQPG 148
Query: 152 LNTVQ 156
LNTVQ
Sbjct: 149 LNTVQ 153
>C1FFR9_MICSR (tr|C1FFR9) Predicted protein OS=Micromonas sp. (strain RCC299 /
NOUM17) GN=MICPUN_60607 PE=4 SV=1
Length = 523
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 114/422 (27%), Positives = 158/422 (37%), Gaps = 131/422 (31%)
Query: 57 WNARESYEFMYARPWQRVNDFYLNAVLGNLSLPLLFGAEKIHDHNNEPGIPAVSDKPEFE 116
W ++ R W+ V F VLG + L E + PG D E
Sbjct: 99 WPPVPCAKYFDDRAWRAVESFAARVVLGEACVSSLAPGE-MEPAGVCPGRGVNQDGTRIE 157
Query: 117 SVASRGRGGRWARLTFKIVLSYHGGSFDGWQKQP-------------------------- 150
++ R +G R R ++ L+Y+G +F GW P
Sbjct: 158 TLPMRTKGSRGRRTNVRVHLAYYGPAFTGWAWTPENDKDYTDCPRSADATSASASANAED 217
Query: 151 -------------------GLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
G +V + I+ L +K + + AGR
Sbjct: 218 DAEDDAVDAARGSSTEWRYGERSVSASIQRALRPLFSSDKERLIHS-----------AGR 266
Query: 192 TDKGVTALQQVCSFYTWKKDV-KPRDIEDAIY----HAAPGKLRVIS-VSEVSRAFHPNF 245
TDKGV A Q S ++ KD PR++ DA+ HAA G RV+ V EVS AFH F
Sbjct: 267 TDKGVHAAAQCFSVWSNAKDTFTPRNVRDALVAHPAHAA-GAWRVVGDVEEVSDAFHATF 325
Query: 246 SAKWRRYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKV 305
A WRRY+YI P+ G D+ EN + +
Sbjct: 326 CATWRRYVYILPMRSLG--------------------------DEEENGLSNVAVDPAAT 359
Query: 306 NRLLQKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEET------ 359
N +L LEGK + FAR T ++ + CF+ ARA EA +P + E
Sbjct: 360 NAMLNALEGKSMDMSAFARATPPGKD----STCFVKVARAFEATVPASKGAERGVGRGAR 415
Query: 360 -------------------------------RVMCIELVANRFLRRMVRVLVATSIREAA 388
RV+ +ELVA+RFLR+MVR LVAT++REAA
Sbjct: 416 RRKSAGFSEDGGLGVGGGGGGDGGPPNSTMERVLVVELVADRFLRKMVRTLVATAVREAA 475
Query: 389 AG 390
G
Sbjct: 476 TG 477
>C1N1T3_MICPC (tr|C1N1T3) Predicted protein OS=Micromonas pusilla (strain
CCMP1545) GN=MICPUCDRAFT_51723 PE=4 SV=1
Length = 554
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 102/344 (29%), Positives = 140/344 (40%), Gaps = 108/344 (31%)
Query: 123 RGGRWARLTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGP-------------------- 162
R G+ R T+K ++Y+G +F GW P ++ P
Sbjct: 196 RRGKKPRHTYKAAVAYYGPAFAGWAWLPSDGATDALFRAPDDERGGGAGGGGAEWTPGAH 255
Query: 163 --LGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKGVTALQQVCSFYTWKKDVKPRDIEDA 220
+ T D+ PI+ AGRTDKGV+AL Q SF+T D+ P +I A
Sbjct: 256 SVVATMQRALNPLFAGDKERPIQ----CAGRTDKGVSALAQTVSFWTL-NDLDPAEIVAA 310
Query: 221 IYHAAPG-------------------------------------KLRVISVSE-VSRAFH 242
+ +P LRV S E V+ FH
Sbjct: 311 VNEGSPAGRAGALRVPSFQSPPSTPFNSASDAFQLHPDIRSYGTTLRVTSAPEKVTERFH 370
Query: 243 PNFSAKWRRYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSV 302
F+A WRRY+YI P+ D +G G+ +SY
Sbjct: 371 ATFAATWRRYVYILPINRIDRIDGKTGDGD-----------------------ESYDVDP 407
Query: 303 SKVNRLLQKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLP--LADNDEETR 360
S V+ +L+KL GK + FARDT +G P+ C + ARA +R+P + D DEE R
Sbjct: 408 SAVDAMLRKLSGKTVDATAFARDTP----QGKPSSCRVKVARAFLSRVPSSVGDGDEEIR 463
Query: 361 --------------VMCIELVANRFLRRMVRVLVATSIREAAAG 390
V +ELVA+RFLR+ VRVLVAT+ REA G
Sbjct: 464 DEDETPTNPSTHQPVCVVELVADRFLRKQVRVLVATAAREANCG 507
>M0VMG6_HORVD (tr|M0VMG6) Uncharacterized protein OS=Hordeum vulgare var.
distichum PE=4 SV=1
Length = 152
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 55/88 (62%), Positives = 74/88 (84%), Gaps = 2/88 (2%)
Query: 300 FSVSKVNRLLQKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADND--E 357
F V+KV++++++LEGK+LSYK+FARDT+ASR++GP ECF++H+RA +L AD + E
Sbjct: 14 FDVAKVDKIIRQLEGKMLSYKIFARDTQASRSDGPAAECFMFHSRAALTKLYSADENCKE 73
Query: 358 ETRVMCIELVANRFLRRMVRVLVATSIR 385
VMCIELVANRFLR+MVRVLVAT+IR
Sbjct: 74 GATVMCIELVANRFLRKMVRVLVATTIR 101
>I0YPD2_9CHLO (tr|I0YPD2) tRNA pseudouridine synthase (Fragment) OS=Coccomyxa
subellipsoidea C-169 GN=COCSUDRAFT_67556 PE=3 SV=1
Length = 250
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 70/205 (34%), Positives = 97/205 (47%), Gaps = 25/205 (12%)
Query: 69 RPWQRVNDFYLNAVLGNLSLPLLFGAEKIH----DHNNEPGIPAVSDKPEFE-------- 116
RPWQ + FY V GN SL L +KI G+P + E
Sbjct: 39 RPWQEIEGFYTRLVAGNASLLDLESLQKIKFTEAAEQTLSGLPGPGGSTQQERQPTSSAD 98
Query: 117 --SVASRGRGGRWARLTFKIVLSYHGGSFDGWQKQPGLN-TVQSVIEGPLGTFVDENKTQ 173
SR + + RLT+ + + + G +F GW PGL+ T Q ++ + +K
Sbjct: 99 SSYSISRRKETQHTRLTYAVTICFFGPAFAGWAWAPGLSGTAQGTVQDAVAKLFGPDKNT 158
Query: 174 QLKDRGLPIEGSVTVAGRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVIS 233
Q+ V AGRTD+GV+A QV SFY+W+ ++ DI I A PGKLR +
Sbjct: 159 QV---------VVNAAGRTDRGVSAYGQVVSFYSWE-ELALDDIITCINAADPGKLRALH 208
Query: 234 VSEVSRAFHPNFSAKWRRYLYIFPL 258
V R+FH F A WRRY+Y+ PL
Sbjct: 209 AQVVPRSFHATFQAVWRRYIYLLPL 233
>B8C9R0_THAPS (tr|B8C9R0) Predicted protein OS=Thalassiosira pseudonana
GN=THAPSDRAFT_8521 PE=4 SV=1
Length = 437
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 99/357 (27%), Positives = 148/357 (41%), Gaps = 101/357 (28%)
Query: 91 LFGAEKIHDHNNEPGIPAVSDKPEFESVASRGRGGRWARLTFKIVLSYHGGSFDGWQKQ- 149
LFG+ H + P P +D F S + R+ K+ ++Y G F GW+ Q
Sbjct: 88 LFGSCSKHTSQSTPR-PPTADLDTFSS-------KKKQRINLKLTVAYRGLDFCGWEDQR 139
Query: 150 -------PGLNTVQSVIEGPL-----GTFVD------------------------ENKTQ 173
QS +E + GT VD N
Sbjct: 140 HELYRSDASGAVKQSAVEEEVLPSVQGTLVDILDPLLGKKATHHNDCKHLEQQAKYNPNF 199
Query: 174 QLKDRGLPIEGSVTVAGRTDKGVTALQQVCSFYTWKKDVKP--------------RDIED 219
Q K + +PIE + VAGRTD GV+A+ QVC T++ D+ +++ +
Sbjct: 200 QKKTKVMPIE--IKVAGRTDTGVSAISQVCRIRTYRTDIGESTNNNTGEGLEKFVQNLVN 257
Query: 220 AIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYLYIFPLTDGGYKDQSSGSGEFFDTLRN 279
LR+ V V FHP F A R Y+Y+ + D
Sbjct: 258 YEMQQLGEGLRIRDVERVKHDFHPTFDASCRAYIYLIDVND------------------- 298
Query: 280 NEIHDSSSKDDLENETKSYMFSVSKVNRLLQKLEGKLLSYKMFARDTKASRNEGPPTECF 339
+ D + + ++ V K+N +L+ LEGK L Y + + + T C
Sbjct: 299 ------DASDAITPKITRHI--VPKLNSVLKTLEGKELDYLAMSH----GKVKTQTTLCT 346
Query: 340 LYHARA--IEARLPLADNDEET----RVMCIELVANRFLRRMVRVLVATSIREAAAG 390
L HARA +E + +ND E+ + +CIELV +RFLRRMVR+LVAT++REA+
Sbjct: 347 LLHARAGIVEWK---CNNDSESPKRKQAICIELVGDRFLRRMVRLLVATALREASGA 400
>K0TH32_THAOC (tr|K0TH32) Uncharacterized protein OS=Thalassiosira oceanica
GN=THAOC_05423 PE=4 SV=1
Length = 417
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 86/287 (29%), Positives = 125/287 (43%), Gaps = 69/287 (24%)
Query: 129 RLTFKIVLSYHGGSFDGW--------QKQPG-------------LNTVQSVIEGPLGTFV 167
R+ KIV+SY GG + GW QK P +VQ + LG +
Sbjct: 133 RVNLKIVVSYRGGDYCGWEDQRHELYQKDPTDASMPIHRKVDDRPPSVQGTLADILGPIL 192
Query: 168 DENKTQQLKDRGLPIEGSVTVAGRTDKGVTALQQVCSFYTWKK-DVKPRDIEDAIYHAAP 226
+ + + + PI + VAGRTD GV+A++QVC TW+ D + D + A
Sbjct: 193 EPDARHETR----PIR--LCVAGRTDLGVSAIRQVCRARTWRNLDDIETYVRDRVNKEAQ 246
Query: 227 GK---LRVISVSEVSRAFHPNFSAKWRRYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIH 283
+ LR+ V V +FHP F A+ R Y Y+ + SG D
Sbjct: 247 ERGLGLRIQDVESVDHSFHPTFDAQSRAYAYLI---------DTCSSGITLDV------- 290
Query: 284 DSSSKDDLENETKSYMFSVSKVNRLLQKLEGKLLSYKMFARDTKASRNEGPPTECFLYHA 343
V K+N+LL+ L GK L Y + + ++ T C ++ A
Sbjct: 291 ------------------VVKLNQLLEPLVGKELDYFVLSYGKVKTQT----TTCTMHRA 328
Query: 344 RAIEARLPLADNDEETRVMCIELVANRFLRRMVRVLVATSIREAAAG 390
RA + E +CIEL+ +RFLRRMVR+LV T++REA G
Sbjct: 329 RATIVEWKEGPSLERREAICIELLGDRFLRRMVRLLVGTALREAHRG 375
>A4RZ76_OSTLU (tr|A4RZ76) Predicted protein OS=Ostreococcus lucimarinus (strain
CCE9901) GN=OSTLU_32283 PE=4 SV=1
Length = 422
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 111/385 (28%), Positives = 158/385 (41%), Gaps = 107/385 (27%)
Query: 56 RWNARESYEFMYARPWQRVNDFYLNAVLGNLSLPLL--FGAEKIHDHNNEPGIPAVSDKP 113
RW+ + F RPW+ V F+ V G+ L L AE + ++ G
Sbjct: 55 RWDPVQQSAFADDRPWRGVERFFRRCVRGDACLRELGLSAAEIVFASGDDAG-------- 106
Query: 114 EFESVASRGRGGRWARLTFKIVLSYHGGSFDG--WQK----------QPGLNTVQSVIEG 161
AS GR R R TF +YHG SF G W +PG +V + ++
Sbjct: 107 -----ASGGRRRREGRRTFAAKCTYHGPSFAGFAWNASRDFAYDGTFEPGCASVSAALQL 161
Query: 162 PLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKGVTALQQVCSFYTWKKDVKPRDIEDAI 221
L +D K R P AGRTD+GV+AL S ++ + +IE +
Sbjct: 162 ALRPVLD-------KTRPTP------SAGRTDRGVSALASCVSLWSKSDAISAAEIERLV 208
Query: 222 YH-AAPGK---LRVISVSEVSRAFHPNFSAKWRRYLYIFPLTDGGYKDQSSGSGEFFDTL 277
+APGK LRV V E AFH F+AK RRY+Y P
Sbjct: 209 NEDSAPGKAGLLRVSDVRETGSAFHATFAAKSRRYVYCLP-------------------- 248
Query: 278 RNNEIHDS-SSKDDLENETKSYMFSVSKVNRLLQKLEGKLLSYKMFARDTKASRNEGPPT 336
+N +S + K DL+ + + L+++ + FAR T G +
Sbjct: 249 KNQAFRESRTPKADLDARIIDRILAA-----LVRECANAPIDMHAFARGTP----PGKSS 299
Query: 337 ECFLYHARAIEARLPL-----ADNDEETR----------------------------VMC 363
ARA EA+LP AD+D +++ V+
Sbjct: 300 VVTFRVARAFEAKLPSPPGDGADSDNDSKVTAGVRRSKSRNDAHDDTIDITDIDADEVIV 359
Query: 364 IELVANRFLRRMVRVLVATSIREAA 388
IELVA+RFLR+++R LVAT+IREAA
Sbjct: 360 IELVADRFLRKLIRCLVATTIREAA 384
>E1ZK35_CHLVA (tr|E1ZK35) Putative uncharacterized protein OS=Chlorella
variabilis GN=CHLNCDRAFT_136316 PE=4 SV=1
Length = 353
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 112/232 (48%), Gaps = 51/232 (21%)
Query: 185 SVTVAGRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPN 244
++ VAGRTD+GV AL Q ++ A+ PG LR ++V R+FH
Sbjct: 43 ALAVAGRTDRGVHALGQ--------------EVVRALNAERPGLLRAWHAAQVPRSFHAT 88
Query: 245 FSAKWRRYLYIFPLTD---GGYK-----------------DQSSGSGEFFDTLRNNEI-- 282
F+AKWRRYLY+ PL + GG + D S+ S +
Sbjct: 89 FAAKWRRYLYLLPLREPENGGMRAGAGDATAAGSAPACEPDASASSAGSEEEGSGQGGSG 148
Query: 283 -------HDSSSKDDLENETKSYMFSVSKVNRLLQKLEGKLLSYKMFARDTKASRNEGPP 335
H+ +D E + + V ++ LL++LE + L Y FAR T A ++
Sbjct: 149 GGAGGRRHELCPEDATEVDAAGEV-DVDRLAALLRRLERRRLDYTAFARATPAGKDP--- 204
Query: 336 TECFLYHARAIEARLPLADNDEETRVMCIELVANRFLRRMVRVLVATSIREA 387
C L ARA RLP + + T V+ EL+ +RFLRRMVRVLVAT++REA
Sbjct: 205 -HCCLLRARAWRGRLP---DPQRTSVLAFELIGDRFLRRMVRVLVATAVREA 252
>L1IR33_GUITH (tr|L1IR33) Uncharacterized protein OS=Guillardia theta CCMP2712
GN=GUITHDRAFT_115478 PE=4 SV=1
Length = 321
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 78/263 (29%), Positives = 113/263 (42%), Gaps = 76/263 (28%)
Query: 129 RLTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQ--QLKDRGLPIEGSV 186
R T+ + +SY G F Q+ PG+ TVQ +E L + T+ L + L +
Sbjct: 80 RRTYVMQVSYLGTDFSAVQRCPGVRTVQEEVEKVLESIFTNYSTRPHSLGGQILACMRTH 139
Query: 187 TVAGRTDKGVTAL-QQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNF 245
AG +G + QQ+ SF+ W + +ED + P +RV+ R+FH NF
Sbjct: 140 RFAGEDREGSKVMGQQMFSFHCWDAIKTCQLVED-MNSRLPRDVRVMP-----RSFHANF 193
Query: 246 SAKWRRYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKV 305
+A WR+Y Y+FPL Q G+G F D+E E +V
Sbjct: 194 AATWRKYCYVFPL-------QEIGAGRF----------------DVEAE---------EV 221
Query: 306 NRLLQKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIE 365
+ +L+ LEG+ Y F+ +V+ +E
Sbjct: 222 DSMLRGLEGRRRHYNSFS-----------------------------------YKVLVVE 246
Query: 366 LVANRFLRRMVRVLVATSIREAA 388
L ANRFLRRMVR LVAT+IR AA
Sbjct: 247 LTANRFLRRMVRKLVATAIRAAA 269
>I6X3U9_PROPF (tr|I6X3U9) tRNA pseudouridine synthase A OS=Propionibacterium
propionicum (strain F0230a) GN=truA PE=3 SV=1
Length = 270
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 60/123 (48%), Gaps = 11/123 (8%)
Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
+I LSY GG+F GW QPGL TVQ V+E LG + + L TVAGR
Sbjct: 4 LRIDLSYDGGAFHGWASQPGLRTVQGVLEDSLGRVLRLDPAPAL-----------TVAGR 52
Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
TD GV A QVC + P D+ + PG + + V+E F FSA WRR
Sbjct: 53 TDAGVHARGQVCHVDVEDPALSPTDLLRRLRRICPGDIAIRDVTEAPDGFDARFSAVWRR 112
Query: 252 YLY 254
Y Y
Sbjct: 113 YCY 115
>D1AG36_SEBTE (tr|D1AG36) tRNA pseudouridine synthase A OS=Sebaldella termitidis
(strain ATCC 33386 / NCTC 11300) GN=truA PE=3 SV=1
Length = 244
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 108/256 (42%), Gaps = 56/256 (21%)
Query: 131 TFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAG 190
KIV Y G F G+Q+Q TVQ IE + + +E E ++ +G
Sbjct: 3 NIKIVYEYDGSKFSGFQRQLNKKTVQGSIEEVIKNYFNE-------------EVNLLSSG 49
Query: 191 RTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWR 250
RTDKGV AL QV +F+ +K + P I+ + A GK+RV E FH FSAK R
Sbjct: 50 RTDKGVHALGQVSNFF-MEKSISPDIIKGILNRALSGKIRVTDAKEADSDFHARFSAKTR 108
Query: 251 RYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQ 310
YLYI L D +SS + L I + K+ ++++
Sbjct: 109 TYLYIMKLKDEITPFESS----YVSALDGKIIPE-------------------KLQKIME 145
Query: 311 KLEGK--LLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVA 368
G+ S++ +D K E C+ EE + + IE+
Sbjct: 146 PFIGRHNFDSFRKKDKDNKNPEREINNIRCY-----------------EEDKRLFIEIEG 188
Query: 369 NRFLRRMVRVLVATSI 384
FL+ M+R+++ +++
Sbjct: 189 KSFLKTMIRIMIGSAL 204
>E8R650_ISOPI (tr|E8R650) tRNA pseudouridine synthase A OS=Isosphaera pallida
(strain ATCC 43644 / DSM 9630 / IS1B) GN=truA PE=3 SV=1
Length = 275
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 69/135 (51%), Gaps = 16/135 (11%)
Query: 131 TFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAG 190
T K++L+Y G F GWQ+QPG TVQ V+E L E P+ +VT +G
Sbjct: 4 TLKLILAYDGTEFSGWQRQPGHRTVQEVVESALRPLTGE-----------PV--AVTASG 50
Query: 191 RTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWR 250
RTD GV AL QV F+T + P A+ P +RV+ E ++FH A+ +
Sbjct: 51 RTDAGVHALGQVAHFHTIARH-PPEVFLKALNATLPPDVRVVWAEEAPQSFHATLDAQSK 109
Query: 251 RYLYIFPLTDGGYKD 265
RY Y+ + +G + D
Sbjct: 110 RYRYV--IDNGPFAD 122
>C7ND49_LEPBD (tr|C7ND49) tRNA pseudouridine synthase A OS=Leptotrichia buccalis
(strain ATCC 14201 / DSM 1135 / JCM 12969 / NCTC 10249)
GN=truA PE=3 SV=1
Length = 251
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 108/252 (42%), Gaps = 48/252 (19%)
Query: 133 KIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRT 192
KIV Y G F G+Q+Q G+ TVQ IE + +N ++ +GRT
Sbjct: 7 KIVYQYDGSKFCGFQRQMGIKTVQGEIEKVISKTFFQNI-------------NMISSGRT 53
Query: 193 DKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRY 252
DKGV A++QV +F +++ I+ + G+++++ + E+ F+ F A+ R Y
Sbjct: 54 DKGVHAIEQVSNF-MIDQNIPLNAIKRQLNKRLKGEIKILDIEEMDEKFNSRFDAQNRTY 112
Query: 253 LYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQKL 312
LYI + D N I M + K +++ +
Sbjct: 113 LYIMKVEDE------------ITPFETNYITGIKE-----------MIDIDKFQKIMLEF 149
Query: 313 EGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVANRFL 372
GK + F + KA RN P E F + D + + + + IE+ N FL
Sbjct: 150 IGK-HDFSSFMKKDKAYRN--PVREIFFINC--------YYDKNGKEKQINIEICGNGFL 198
Query: 373 RRMVRVLVATSI 384
+ MVR+++ +++
Sbjct: 199 KTMVRIMIGSAL 210
>K8EEF4_9CHLO (tr|K8EEF4) Uncharacterized protein OS=Bathycoccus prasinos
GN=Bathy05g03830 PE=4 SV=1
Length = 508
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 100/408 (24%), Positives = 150/408 (36%), Gaps = 112/408 (27%)
Query: 66 MYARPWQRVNDFYLNAVLGNLSLPLLFGAEKIHDHNNEPGIP---AVSDKPEFESVASRG 122
M R W V F L V +L +H + EP +P +V E E+ ++
Sbjct: 71 MDFRDWLSVERFLLQIVREEKNLS------DVHVADAEPDLPWNFSVQKTLE-EAKDAKQ 123
Query: 123 RGGRW----ARLTFKIVLSYHGGSFD--GWQK------------------QPGLNTVQSV 158
R R R + + L Y G +F W K QPG +V +
Sbjct: 124 RSHRTQTESKRAKYCVRLKYFGNAFASFAWDKNVDDTSKHSSERFYGDNWQPGNASVVAT 183
Query: 159 IEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKGVTALQQVCSFY------------ 206
I LG P+ V +GRTD+ V+ Q+ +
Sbjct: 184 IRESLG-----EHCAGFDKEKHPV---VYQSGRTDRNVSGAGQIVQIFRDAKNHLERRYV 235
Query: 207 -----TWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYLYIFPLTDG 261
K ++ R I ++ G L+ + V+ +H FSA WRRY+YI P
Sbjct: 236 DETEEERKCELIRRAINESTEVGKRGYLKAVECFRVNAEWHATFSATWRRYVYIIP---- 291
Query: 262 GYKDQSSGSGEFFDTLRNNEIHDSSSKD-DLENETKSYMFSVSKVNRLLQKLEGKLLSYK 320
++ E + LR E ++ +D D ++R+L+K E K L +
Sbjct: 292 ---KKTLDVDEVKEELRKVEGGETDVEDVDAFAHHSKEEIDCDLLDRMLRKFENKTLDFY 348
Query: 321 MFARDTKASRNEGPPTECFLYHARAIEARLP-------------------------LADN 355
+ARDT +G TEC + +ARA +P L D
Sbjct: 349 AYARDTP----KGKSTECKMLYARAKTISIPKFQMKAATSKYGKRYRDRRYKDTSLLYDE 404
Query: 356 DEETR----------------VMCIELVANRFLRRMVRVLVATSIREA 387
R + IELVA+RFLR+MVR +V+T+ REA
Sbjct: 405 TAFHRATRTEKEEEEEEEPLECIAIELVADRFLRKMVRCIVSTACREA 452
>Q40J31_EHRCH (tr|Q40J31) tRNA pseudouridine synthase A OS=Ehrlichia chaffeensis
str. Sapulpa GN=truA PE=3 SV=1
Length = 245
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 66/127 (51%), Gaps = 16/127 (12%)
Query: 130 LTFKIVLSYHGGSFDGWQKQP-GLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTV 188
+ +KI + Y+G +F GWQKQ N++Q ++E + F ++ T V V
Sbjct: 1 MRYKITIEYNGSNFIGWQKQKHSSNSIQEILENAILKFSQQHTT-------------VYV 47
Query: 189 AGRTDKGVTALQQVCSFYTWKKDVKPRDIEDAI-YHAAPGKLRVISVSEVSRAFHPNFSA 247
AGRTD GV AL QV F ++ + +AI YH P + ++SV + FH FSA
Sbjct: 48 AGRTDAGVHALGQVAHF-DLTTNLDTYVVRNAINYHLIPHAIAILSVEKTDDKFHARFSA 106
Query: 248 KWRRYLY 254
K R YLY
Sbjct: 107 KKRHYLY 113
>D0GPD4_9FUSO (tr|D0GPD4) tRNA pseudouridine synthase A OS=Leptotrichia
goodfellowii F0264 GN=truA PE=3 SV=1
Length = 249
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 120/255 (47%), Gaps = 56/255 (21%)
Query: 133 KIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRT 192
K+V Y G F G+Q+Q TVQ G + + +N +Q++ ++ +GRT
Sbjct: 8 KMVYQYDGSKFYGFQRQKNKKTVQ----GEIEKVILKNFSQKI---------NMISSGRT 54
Query: 193 DKGVTALQQVCSFYTWKK---DVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKW 249
DKGV AL QV +F+ +K + R I +Y G+++++SV E+ R F+ F AK
Sbjct: 55 DKGVHALGQVSNFFIDEKIPLEAIKRQINKNLY----GEIKILSVEEIKREFNSRFDAKS 110
Query: 250 RRYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLL 309
R YLYI E +N I + K+D+ ++ + +++
Sbjct: 111 RTYLYIMK------------KEEEITPFESNYI--TGIKNDI---------NIEQFQKIM 147
Query: 310 QKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVAN 369
+ +GK + F + KA RN T +Y+ + + +E + + +E+ +
Sbjct: 148 EIFKGK-YDFSSFMKKDKAIRN----TMREIYNIK--------CEYEEREKKIYVEICGS 194
Query: 370 RFLRRMVRVLVATSI 384
FL+ M+R+++ +++
Sbjct: 195 SFLKTMIRIMIGSAM 209
>R5BED7_9BACT (tr|R5BED7) tRNA pseudouridine synthase A OS=Alistipes sp. CAG:514
GN=BN689_00664 PE=4 SV=1
Length = 259
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 102/260 (39%), Gaps = 53/260 (20%)
Query: 130 LTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVA 189
+ ++I+LSY G SF GWQ Q TVQ ++ L T + EN +VT A
Sbjct: 1 MRYRIILSYDGSSFCGWQIQNQAETVQECLQNALSTLLKENI-------------AVTGA 47
Query: 190 GRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKW 249
GRTD V A+ V F T D+ + I P ++V SV FH F A
Sbjct: 48 GRTDSKVNAINYVAHFETSNPDIDASAVGYKINAILPAGIKVHSVERCEPDFHARFDATQ 107
Query: 250 RRYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLL 309
R Y Y F R+ + + S ++ V K+NR
Sbjct: 108 REYKY------------------FLHRRRDPFMREYSY-------LYTFPLDVGKMNRAA 142
Query: 310 QKLEGK--LLSYKMFARDTKASRNEGPPTECFLYHARAIEARLP-----LADNDEETRVM 362
Q L GK ++ D K S C + AR EA P + EE +
Sbjct: 143 QALLGKHDFSCFEKVGSDNKTSI-------CTVTLAR-WEAYSPDHVRIMGYPAEEGDYL 194
Query: 363 CIELVANRFLRRMVRVLVAT 382
+ A+RFLR MVR +V +
Sbjct: 195 VFTIRADRFLRNMVRAVVGS 214
>G7V946_THELD (tr|G7V946) tRNA pseudouridine synthase A OS=Thermovirga lienii
(strain ATCC BAA-1197 / DSM 17291 / Cas60314) GN=truA
PE=3 SV=1
Length = 250
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 105/251 (41%), Gaps = 52/251 (20%)
Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
+ + +SY G F GWQKQP TVQ V+E L G P+ +V AGR
Sbjct: 4 YAMQVSYKGKDFSGWQKQPNSRTVQGVLESALELLA-----------GHPV--TVYGAGR 50
Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
TDKGV AL QV SF + P + A+ P +RV+ + V +FH +SA WR
Sbjct: 51 TDKGVHALGQVASFDL-NRHWAPEKLLLAVNAHLPKDVRVMRMRYVDNSFHARYSALWRE 109
Query: 252 YLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQK 311
Y+Y F T R H S D + + + + +SK R +
Sbjct: 110 YVY------------------FIWTGRVCFPHFS---DYVWHRKQKW--DISKARRACKL 146
Query: 312 LEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVANRF 371
G Y+ F R ++E PP+ H + +R L + + + F
Sbjct: 147 FWGT-KDYRAFCR-----KSECPPSAFRTIHKAEVFSRGDL---------VWFRVRGDSF 191
Query: 372 LRRMVRVLVAT 382
L MVR++V T
Sbjct: 192 LTNMVRIMVGT 202
>F9DIR8_9BACT (tr|F9DIR8) tRNA pseudouridine synthase A OS=Prevotella pallens
ATCC 700821 GN=truA PE=3 SV=1
Length = 258
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 100/255 (39%), Gaps = 45/255 (17%)
Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
+ I SY G ++ GWQ QP TVQ V+E L T L + SV AGR
Sbjct: 4 YFIQFSYDGTNYHGWQIQPNGITVQEVLEKALSTL-------------LRTKISVIGAGR 50
Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
TD GV A V F + + + + + P + V + V+ H FSA R
Sbjct: 51 TDSGVHARTMVAHFDFTENSIDCKQLCYKLNRILPRDVAVTAAYPVNNELHARFSATSRT 110
Query: 252 YLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQK 311
Y Y + Q + S E L N++ NE SY+
Sbjct: 111 YHYYMHHARNPF--QKAYSCEMPYALNYNQM----------NEAASYLIGER-------- 150
Query: 312 LEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEA--RLPLADNDEETRVMCIELVAN 369
++K F + + + T C L A+ + L + DN ET C + AN
Sbjct: 151 ------NFKCFCK----AGGDNKTTICNLTEAQWVRCNTELSIYDNTAETESWCFVITAN 200
Query: 370 RFLRRMVRVLVATSI 384
RFLR MVR +V T +
Sbjct: 201 RFLRNMVRAVVGTLV 215
>I0TCG1_9BACT (tr|I0TCG1) tRNA pseudouridine synthase A OS=Prevotella sp. oral
taxon 306 str. F0472 GN=truA PE=3 SV=1
Length = 253
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 77/255 (30%), Positives = 103/255 (40%), Gaps = 47/255 (18%)
Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
+ I LSY G ++ GWQ QP +VQ V+E L T + E E S+T AGR
Sbjct: 4 YFITLSYDGTAYHGWQIQPNGISVQEVLERSLSTLLRE-------------EVSITGAGR 50
Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
TD GV V F T K + + + + P + V + VS H FSA R
Sbjct: 51 TDAGVHGRMMVAHFDT-DKTIDCQQLVYKLNRLLPRDVSVSQIVPVSEDLHARFSATSRT 109
Query: 252 YLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQK 311
Y Y T + Q S EIH Y K+N
Sbjct: 110 YHYYVHTTKQPFSRQYSC-----------EIH--------------YPLDFDKMNEAADY 144
Query: 312 LEGKLLSYKMFARDTKASRNEGPPTECFLYHARAI--EARLPLADNDEETRVMCIELVAN 369
L G+ +K F + + + T C L AR I +A L +D+ T C + AN
Sbjct: 145 LIGE-KDFKCFCK----TGADVKTTICNLTEARWIPCKAEQALVTSDKVTN-WCFVISAN 198
Query: 370 RFLRRMVRVLVATSI 384
RFLR MVR +V T +
Sbjct: 199 RFLRNMVRSVVGTLV 213
>A7HCM5_ANADF (tr|A7HCM5) tRNA pseudouridine synthase A OS=Anaeromyxobacter sp.
(strain Fw109-5) GN=truA PE=3 SV=1
Length = 265
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 66/124 (53%), Gaps = 15/124 (12%)
Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
+ + ++Y GG F G+Q+QPGL TVQ +EG L + ++ VA R
Sbjct: 6 YALRVAYEGGRFRGFQRQPGLPTVQDALEGAL--------------LAAGVRATLAVAAR 51
Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
TD GV AL QV SF + + + P + A+ A P + V+ V V+ +FH +A+ RR
Sbjct: 52 TDAGVHALDQVVSF-SARAALDPAALRGALNAALPEGVAVLEVLRVAPSFHARNTARARR 110
Query: 252 YLYI 255
Y+Y+
Sbjct: 111 YVYL 114
>R5G6H8_9FIRM (tr|R5G6H8) tRNA pseudouridine synthase A 1 OS=Coprobacillus sp.
CAG:698 GN=BN756_01325 PE=4 SV=1
Length = 262
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 111/264 (42%), Gaps = 55/264 (20%)
Query: 119 ASRGRGGRWARLTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDR 178
ASR + +K ++SY G F G+Q QP L TVQ IE L + T
Sbjct: 9 ASRNNCYLGDEMRYKCIVSYDGTCFHGFQVQPNLRTVQEEIEKVLQIICKKKIT------ 62
Query: 179 GLPIEGSVTVAGRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVS 238
+ +GRTD GV A+ QV F T + D+ ++++AI P + + VS+VS
Sbjct: 63 -------IFPSGRTDTGVHAIGQVFHFDT-EIDMGEWNMKNAINSRLPRDIYIKEVSKVS 114
Query: 239 RAFHPNFSAKWRRYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSY 298
FH FS+K + Y YI L + ++ LR N ++ K+
Sbjct: 115 LDFHARFSSKRKEYHYIIGLDE-------------YNPLRKNYVYYPPFKN--------- 152
Query: 299 MFSVSKVNRLLQKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEE 358
F + K+ G+ +K F ++ K R + N E+
Sbjct: 153 -FDIDKMKDASSIFVGE-HDFKSFTKNHKIENT----------------VRTIYSINFEK 194
Query: 359 TR-VMCIELVANRFLRRMVRVLVA 381
T ++ I+ + N FL MVR+LVA
Sbjct: 195 TEDILIIKFIGNGFLHNMVRILVA 218
>F7XVR9_MIDMI (tr|F7XVR9) tRNA pseudouridine synthase A OS=Midichloria
mitochondrii (strain IricVA) GN=truA PE=3 SV=1
Length = 246
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 62/123 (50%), Gaps = 14/123 (11%)
Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
+KI + Y G F GWQ+Q ++Q IE + F + E +V AGR
Sbjct: 4 YKITVEYDGSKFCGWQRQKNCISIQESIENSIAKFAHK-------------EVTVFGAGR 50
Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
TD GV A +QV F ++D + I+ AI H + V+++ VS FH FSAK +R
Sbjct: 51 TDAGVHAFEQVAHF-DLEQDYQLHKIKSAINHFVKPDIAVLNIEAVSTDFHARFSAKKKR 109
Query: 252 YLY 254
Y+Y
Sbjct: 110 YIY 112
>A8SNL4_9FIRM (tr|A8SNL4) tRNA pseudouridine synthase A OS=Parvimonas micra ATCC
33270 GN=truA PE=3 SV=1
Length = 247
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 66/127 (51%), Gaps = 14/127 (11%)
Query: 134 IVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTD 193
+ +SY G F G+QKQ + TVQ IE L +EN ++ AGRTD
Sbjct: 6 LTISYDGSLFFGFQKQKNVVTVQGEIEDALKKITEENI-------------NIISAGRTD 52
Query: 194 KGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYL 253
+GV +L+ + +F+T + +V + + A+ H P +RV+ EVS FH F AK + Y
Sbjct: 53 RGVHSLRHIINFHT-ESNVGVLNFKTALNHFLPIGVRVLDSKEVSENFHSRFDAKMKTYK 111
Query: 254 YIFPLTD 260
YI L +
Sbjct: 112 YILNLDE 118
>R5IVS9_9FIRM (tr|R5IVS9) tRNA pseudouridine synthase A OS=Firmicutes bacterium
CAG:822 GN=BN793_00663 PE=4 SV=1
Length = 247
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 61/129 (47%), Gaps = 12/129 (9%)
Query: 130 LTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVA 189
+ + I +Y G + G+QKQP TVQS +E L T K SV +
Sbjct: 1 MRYLITFAYDGSKYKGYQKQPKEKTVQSELEKALKTINGHKKV------------SVHAS 48
Query: 190 GRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKW 249
GRTD GV A Q F K + P ++D + PG + + +V V+ FH F+AK
Sbjct: 49 GRTDAGVHAFNQKAHFDLDIKHITPEKLKDGLNSLLPGDIYIKNVEIVADDFHARFNAKA 108
Query: 250 RRYLYIFPL 258
+ Y+YI +
Sbjct: 109 KEYIYIINM 117
>D5MF74_9BACT (tr|D5MF74) tRNA pseudouridine synthase A OS=Candidatus
Methylomirabilis oxyfera GN=truA PE=3 SV=1
Length = 263
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 60/124 (48%), Gaps = 14/124 (11%)
Query: 131 TFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAG 190
TFK+ + Y G + GWQ QPG+ T+Q ++G + V ++ V AG
Sbjct: 3 TFKLTIEYDGTDYHGWQVQPGMTTIQGTLQGAVARIVGKDV-------------HVMGAG 49
Query: 191 RTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWR 250
RTD GV A QV S T + P A+ P + V +V E+ FH +SA+W+
Sbjct: 50 RTDAGVHAHGQVASLRT-EFHHPPDTFRRALTSVLPSDIVVTAVEEMDDDFHAQYSAQWK 108
Query: 251 RYLY 254
RY Y
Sbjct: 109 RYRY 112
>C0QUR7_PERMH (tr|C0QUR7) tRNA pseudouridine synthase A OS=Persephonella marina
(strain DSM 14350 / EX-H1) GN=truA PE=3 SV=1
Length = 244
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 64/123 (52%), Gaps = 14/123 (11%)
Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
+K+V+ Y G ++ GWQKQP TVQ V+E L E+ + + GS GR
Sbjct: 7 YKLVIMYIGKNYHGWQKQPKHRTVQGVLEEKLKVLFKED---------IVLIGS----GR 53
Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
TD GV AL QV +F T KP +I + P + V SV EV +FH FSAK +
Sbjct: 54 TDAGVHALGQVANFKTISYR-KPEEIYRYLNATLPRDISVKSVEEVPLSFHARFSAKGKT 112
Query: 252 YLY 254
Y+Y
Sbjct: 113 YIY 115
>B5JG47_9BACT (tr|B5JG47) tRNA pseudouridine synthase A OS=Verrucomicrobiae
bacterium DG1235 GN=truA PE=3 SV=1
Length = 243
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 67/132 (50%), Gaps = 16/132 (12%)
Query: 130 LTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVA 189
+ +K SY G ++ GWQKQ G +VQ VIE L +QL + I GS
Sbjct: 1 MRWKCSCSYDGTNYAGWQKQSGQISVQQVIEEVL---------EQLLKEKVAIHGS---- 47
Query: 190 GRTDKGVTALQQVCSF-YTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAK 248
GRTD GV AL+QV F Y W+ + A++ P ++RV S +EV FH FSA
Sbjct: 48 GRTDAGVHALEQVFHFDYDWRHG--GESLVKALHSKLPKEIRVESATEVGEEFHARFSAV 105
Query: 249 WRRYLYIFPLTD 260
+RY Y L +
Sbjct: 106 SKRYQYRLALGE 117
>B4S8J0_PROA2 (tr|B4S8J0) tRNA pseudouridine synthase A OS=Prosthecochloris
aestuarii (strain DSM 271 / SK 413) GN=truA PE=3 SV=1
Length = 237
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 110/253 (43%), Gaps = 55/253 (21%)
Query: 134 IVLSYHGGSFDGWQKQPG-LNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRT 192
+++ Y G F GWQ+Q G ++TVQ IE L + E S+T AGRT
Sbjct: 1 MIIEYDGTDFAGWQRQDGAVSTVQGEIEAVLRRILQEAV-------------SITGAGRT 47
Query: 193 DKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRY 252
DKGV A+ Q SF T ++ + ++ P +R++S+ +V FH +SA R+Y
Sbjct: 48 DKGVHAMGQAASFMT-GSSMEAGRLCHSLNSLLPSSIRIMSLIDVDGDFHARYSALSRQY 106
Query: 253 LYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQKL 312
Y+ + + SG +D +S D + ++N L
Sbjct: 107 RYMLRQRESAIFRRFSG-------------YDRASHD------------LDQLNSRASVL 141
Query: 313 EGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVANRFL 372
G+ +K F++ +R T C + A+ E + ++ ANRFL
Sbjct: 142 LGR-HDFKAFSKSGSDTRT----TCCTVSEAQWF----------REKEFLVFQISANRFL 186
Query: 373 RRMVRVLVATSIR 385
R MVR LV+ ++R
Sbjct: 187 RSMVRYLVSATLR 199
>R7JZF3_9CLOT (tr|R7JZF3) tRNA pseudouridine synthase A 1 OS=Clostridium sp.
CAG:277 GN=BN584_00801 PE=4 SV=1
Length = 252
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 60/126 (47%), Gaps = 14/126 (11%)
Query: 132 FKIVLSYHGGSFDGWQKQPGL-NTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAG 190
+K++L Y G + GWQKQ NT+Q+ +E G G P + V +G
Sbjct: 4 YKLILQYDGTRYSGWQKQGNTDNTIQAKLETIAGKLT-----------GTPTD--VNGSG 50
Query: 191 RTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWR 250
RTD GV AL Q +F KK I D HA P +RVISV E FH +AK +
Sbjct: 51 RTDAGVHALGQTANFRCEKKLADTDYIRDYFNHALPMDIRVISVEEAPTRFHARLNAKEK 110
Query: 251 RYLYIF 256
Y Y+
Sbjct: 111 HYRYVI 116
>D8PHD2_9BACT (tr|D8PHD2) tRNA pseudouridine synthase A OS=Candidatus Nitrospira
defluvii GN=truA PE=3 SV=1
Length = 253
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/254 (25%), Positives = 100/254 (39%), Gaps = 52/254 (20%)
Query: 131 TFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAG 190
TFK+VL Y G + GWQ+QP T+Q+ +E L T + AG
Sbjct: 3 TFKLVLEYDGTQYAGWQRQPNAPTIQAAVEEALAAIAQTRLT-------------IIGAG 49
Query: 191 RTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWR 250
RTD GV A QV SF T + + R+ A+ P + +SV V FH +SA +
Sbjct: 50 RTDAGVHAFGQVASFRT-DRGLSQREWLRALNAHLPADISALSVKAVPDHFHARYSANGK 108
Query: 251 RYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQ 310
Y Y + + S + L E ++ + +
Sbjct: 109 LYEY--------------------------HLMNRSERAPLLRERAWMLYKPLDFAAMTE 142
Query: 311 KLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVANR 370
S+ + +T + NE P +C RL AD + ++ + A+R
Sbjct: 143 AAAYLTGSHDFSSFETAPTDNENP--QC----------RLQRADLRRQGDLIILSFYADR 190
Query: 371 FLRRMVRVLVATSI 384
FL++MVR +V T +
Sbjct: 191 FLKQMVRSMVGTLV 204
>E2SG52_9ACTO (tr|E2SG52) tRNA pseudouridine synthase A OS=Aeromicrobium marinum
DSM 15272 GN=truA PE=3 SV=1
Length = 262
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 58/125 (46%), Gaps = 14/125 (11%)
Query: 130 LTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVA 189
+ +I L+Y G F GW QPG TVQ VIE LGT + + T L T A
Sbjct: 1 MRLRIDLAYDGTDFRGWAVQPGQRTVQGVIESALGTMLRLDPTPTL-----------TCA 49
Query: 190 GRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKW 249
GRTD GV A QV D P +E + P +R+ SV E F F+A
Sbjct: 50 GRTDAGVHARGQVAHV---DLDTHPGVLERRLRRYLPDDIRIKSVVEAPPGFDARFAATE 106
Query: 250 RRYLY 254
RRY+Y
Sbjct: 107 RRYVY 111
>R6HEN3_9FIRM (tr|R6HEN3) tRNA pseudouridine synthase A OS=Phascolarctobacterium
sp. CAG:266 GN=BN574_00545 PE=4 SV=1
Length = 252
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 63/124 (50%), Gaps = 14/124 (11%)
Query: 131 TFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAG 190
TFK+ ++Y G + G+Q+QP TVQ V+E L EN + + GS G
Sbjct: 4 TFKLTVAYDGSGYHGFQRQPRDITVQQVLEDALSRITGEN---------VVLAGS----G 50
Query: 191 RTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWR 250
RTD GV A QV SF T + +++ A+ P + VI+ E FH FSAKW+
Sbjct: 51 RTDSGVHARGQVVSFTT-GCGIPAANLKRAMNSILPPDITVIASQEAEEGFHARFSAKWK 109
Query: 251 RYLY 254
RY Y
Sbjct: 110 RYCY 113
>F5TCB7_9FIRM (tr|F5TCB7) tRNA pseudouridine synthase OS=Parvimonas sp. oral
taxon 110 str. F0139 GN=truA PE=3 SV=1
Length = 184
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 65/127 (51%), Gaps = 14/127 (11%)
Query: 134 IVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTD 193
+ +SY G F G+QKQ + TVQ IE L EN ++ AGRTD
Sbjct: 6 LTISYDGSLFFGFQKQENVVTVQGEIENALKKITGENI-------------NIISAGRTD 52
Query: 194 KGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYL 253
+GV +L+ + +F+T + +V + + A+ H P +RV+ EVS FH F AK + Y
Sbjct: 53 RGVHSLRHIINFHT-ESNVGILNFKTALNHFLPIGVRVLDSKEVSENFHSRFDAKMKTYK 111
Query: 254 YIFPLTD 260
YI L +
Sbjct: 112 YILNLDE 118
>D5SSD7_PLAL2 (tr|D5SSD7) tRNA pseudouridine synthase A OS=Planctomyces
limnophilus (strain ATCC 43296 / DSM 3776 / IFAM 1008 /
290) GN=truA PE=3 SV=1
Length = 305
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/258 (24%), Positives = 104/258 (40%), Gaps = 39/258 (15%)
Query: 131 TFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAG 190
T K+ ++Y G ++ GWQ QP ++QS + + F E + AG
Sbjct: 7 TLKLTIAYDGTAYCGWQTQPNGVSIQSTLMQAIQEFTAETPV-------------LYAAG 53
Query: 191 RTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWR 250
RTD GV A+ QV SF T V + A+ P + + V +V FH F A+ +
Sbjct: 54 RTDAGVHAVGQVVSFST-TSPVPAANFRPALQRFLPDDIVIRQVEDVQPGFHAQFHARLK 112
Query: 251 RYLYIF---PLTDGGYKDQSSGSGEFFD-TLRNNEIHDSSSKDDLENETKSYMFSVSKVN 306
Y Y+F P+ Y+ + D + I D + + + V
Sbjct: 113 TYRYLFHNAPVWSPFYRQYALWHRTRLDEQAMDFAIRQIVGTFDFRSLETQWPNRKTSVR 172
Query: 307 RLLQKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIEL 366
+++ ++ ++ + + GPP+E E +L D E +C+E+
Sbjct: 173 TVIKASVQRIRNWNLLGEN-------GPPSE---------ECQL-----DPEGEFLCMEI 211
Query: 367 VANRFLRRMVRVLVATSI 384
AN FL MVR + T I
Sbjct: 212 TANGFLYNMVRTIAGTLI 229
>C9MQV8_9BACT (tr|C9MQV8) tRNA pseudouridine synthase A OS=Prevotella veroralis
F0319 GN=truA PE=3 SV=1
Length = 253
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 76/255 (29%), Positives = 101/255 (39%), Gaps = 47/255 (18%)
Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
+ I LSY G ++ GWQ QP +VQ V+E L T + E E S+T GR
Sbjct: 4 YFITLSYDGTAYHGWQIQPNGISVQEVLERSLSTLLRE-------------EVSITGGGR 50
Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
TD GV V F T K + + + + P + V + VS H FSA R
Sbjct: 51 TDAGVHGRMMVAHFDT-DKTIACQQLVYKLNRLLPRDVSVSQIVPVSEDLHARFSATSRT 109
Query: 252 YLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQK 311
Y Y T + Q S EIH Y K+N
Sbjct: 110 YHYYVHTTKQPFSRQYSC-----------EIH--------------YPLDFDKMNEAADY 144
Query: 312 LEGKLLSYKMFARDTKASRNEGPPTECFLYHARAI--EARLPLADNDEETRVMCIELVAN 369
L G+ +K F + + + T C L AR I +A L +D T C + AN
Sbjct: 145 LIGE-KDFKCFCK----TGADVKTTICNLTEARWIPCKAEQALVTSDRITN-WCFVISAN 198
Query: 370 RFLRRMVRVLVATSI 384
RFLR MVR +V T +
Sbjct: 199 RFLRNMVRSVVGTLV 213
>R7LMS2_9CLOT (tr|R7LMS2) tRNA pseudouridine synthase A OS=Clostridium sp.
CAG:389 GN=BN638_01098 PE=4 SV=1
Length = 246
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 100/254 (39%), Gaps = 53/254 (20%)
Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
K+ + Y G F+GWQKQP +Q IE + E E + +GR
Sbjct: 4 IKLTIEYDGKDFNGWQKQPNKLNIQGTIEQAIKIVTGE-------------EVDLMASGR 50
Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
TD GV A QV +F T ++ I A+ +R+IS EV FH + K +
Sbjct: 51 TDAGVHAFGQVANFKT-NSNIPVEKIPIALNSNLKKSIRIISAEEVDERFHSRLTCKKKT 109
Query: 252 YLYIFPLTDGGYKDQSSGSGEFFDTL-RNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQ 310
Y Y+ + EF + RN E H D ++K+ ++
Sbjct: 110 YRYVI------------NNSEFSSAIYRNLETHIPQKLD------------INKMKEAVK 145
Query: 311 KLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVANR 370
EG+ +K F KAS + +Y AR E +P + IEL N
Sbjct: 146 YFEGE-HDFKAF----KASGTSSKSSVRTIYKARVYE--MP-------NNRIYIELTGNG 191
Query: 371 FLRRMVRVLVATSI 384
FL MVR++ T +
Sbjct: 192 FLYNMVRIIAGTLV 205
>R7AYD0_9FIRM (tr|R7AYD0) tRNA pseudouridine synthase A OS=Firmicutes bacterium
CAG:308 GN=BN599_00700 PE=4 SV=1
Length = 243
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 64/126 (50%), Gaps = 14/126 (11%)
Query: 130 LTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVA 189
+ +K++L+Y G ++ GWQKQ +Q VIE L T + E +T +
Sbjct: 1 MIYKVILAYDGSNYAGWQKQENALGIQEVIEKALTTIHKK-------------ETFITAS 47
Query: 190 GRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKW 249
GRTD V AL QV F KK + P + A+ P +R++ VS + FH FSAK
Sbjct: 48 GRTDAKVHALGQVFHFEADKK-IGPDRYKMALNALLPEDIRILKVSMEADDFHARFSAKS 106
Query: 250 RRYLYI 255
+RY YI
Sbjct: 107 KRYDYI 112
>A3IQ30_9CHRO (tr|A3IQ30) tRNA pseudouridine synthase A OS=Cyanothece sp. CCY0110
GN=truA PE=3 SV=1
Length = 285
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 59/123 (47%), Gaps = 14/123 (11%)
Query: 134 IVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTD 193
+V+ Y G F GWQ+QP TVQ VIE + + + PI G AGRTD
Sbjct: 15 LVIQYQGSRFHGWQRQPNQRTVQEVIESSIAEVLGYHT---------PIHG----AGRTD 61
Query: 194 KGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYL 253
GV A QV F + + P+ + + P + + +EVS +H FSA WRRY
Sbjct: 62 AGVHAAAQVAHF-DYISPIPPQRWVEILNQRLPDDILIRGCAEVSLTWHARFSALWRRYR 120
Query: 254 YIF 256
Y F
Sbjct: 121 YSF 123
>R6H4K3_9CLOT (tr|R6H4K3) tRNA pseudouridine synthase A 2 OS=Clostridium sp.
CAG:575 GN=BN717_00492 PE=4 SV=1
Length = 247
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 103/253 (40%), Gaps = 51/253 (20%)
Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
K+ + Y G F+GWQKQP +Q IE + T E+ Q +GR
Sbjct: 4 IKLTIEYDGKEFNGWQKQPNKLNIQGTIEQAIKTITGEDVDLQ-------------ASGR 50
Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
TD GV AL QV +F T ++ + AI +R++ EV FH S K +
Sbjct: 51 TDAGVHALGQVANFKT-NSNIPIEKMSIAINCNLKKSIRIVKAEEVEERFHSRLSCKRKT 109
Query: 252 YLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQK 311
Y YI + N+EI S+ +LE Y + K+ + ++
Sbjct: 110 YRYI---------------------INNSEI-PSAIYRNLETHI-PYKLDIEKMKQAVKY 146
Query: 312 LEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVANRF 371
EG+ +K F KAS + +Y A L + +N + IEL N F
Sbjct: 147 FEGE-HDFKAF----KASGTSSKSSIRTIYKAEV----LKMPNNR-----IYIELTGNGF 192
Query: 372 LRRMVRVLVATSI 384
L MVR++ T +
Sbjct: 193 LYNMVRIIAGTLV 205
>C9N0X3_9FUSO (tr|C9N0X3) tRNA pseudouridine synthase A OS=Leptotrichia hofstadii
F0254 GN=truA PE=3 SV=1
Length = 250
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 110/259 (42%), Gaps = 50/259 (19%)
Query: 127 WARLTFKIVLSYHGGSFDGWQKQPGLNTVQSVIE-GPLGTFVDENKTQQLKDRGLPIEGS 185
+ K++ Y G F G+Q+Q + TVQ IE TF Q++ +
Sbjct: 1 MGKRNLKMIYQYDGSKFCGFQRQKKMKTVQGEIERAVFKTF-----NQEI---------N 46
Query: 186 VTVAGRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNF 245
+ +GRTDKGV A++QV +F +++ I+ I G+++V+ V E + F+ F
Sbjct: 47 MISSGRTDKGVHAMEQVSNF-VIDENIPIEAIKRQINKCLKGEVKVLEVEEAGKDFNARF 105
Query: 246 SAKWRRYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKV 305
AK R YLYI + D + + LR + SV K
Sbjct: 106 DAKSRTYLYIMRNEE----DITPFEANYVTGLRAS-------------------VSVEKF 142
Query: 306 NRLLQKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIE 365
++ GK + F + KA RN P +Y + ++ + + +E
Sbjct: 143 QEIMNDFVGK-YDFSSFMKKDKAYRN---PVREIVYIKCYYDEKIG-------QKQLNVE 191
Query: 366 LVANRFLRRMVRVLVATSI 384
+ N FL+ MVR+++ +++
Sbjct: 192 ICGNGFLKTMVRIMIGSAL 210
>D4JDM8_9FIRM (tr|D4JDM8) tRNA pseudouridine synthase A OS=[Eubacterium]
cylindroides T2-87 GN=truA PE=3 SV=1
Length = 243
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 64/126 (50%), Gaps = 14/126 (11%)
Query: 130 LTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVA 189
+ +K++L+Y G ++ GWQKQ +Q VIE L T + E +T +
Sbjct: 1 MIYKVILAYDGSNYAGWQKQENALGIQEVIEKALTTIHKK-------------EIFITAS 47
Query: 190 GRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKW 249
GRTD V AL QV F KK + P + A+ P +R++ VS + FH FSAK
Sbjct: 48 GRTDAKVHALGQVFHFEADKK-IGPDRYKMALNALLPEDIRILKVSMEADDFHARFSAKS 106
Query: 250 RRYLYI 255
+RY YI
Sbjct: 107 KRYDYI 112
>A4U350_9PROT (tr|A4U350) tRNA pseudouridine synthase A OS=Magnetospirillum
gryphiswaldense GN=truA PE=3 SV=1
Length = 245
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 61/124 (49%), Gaps = 15/124 (12%)
Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
FK+++ YHG F GWQ+Q +VQ +E + F +E +VT AGR
Sbjct: 4 FKLLIEYHGTPFVGWQRQDNGISVQGEVEAAIFRFCG-------------LETTVTAAGR 50
Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAI-YHAAPGKLRVISVSEVSRAFHPNFSAKWR 250
TD GV A QV F +DV ++ A+ YH P + V +V V FH FSA R
Sbjct: 51 TDAGVHATGQVIHF-DLDRDVSAERVQGALNYHLKPHPIAVRAVEIVPDDFHARFSALGR 109
Query: 251 RYLY 254
YLY
Sbjct: 110 SYLY 113
>M4RDW6_9BIFI (tr|M4RDW6) tRNA pseudouridine synthase A OS=Bifidobacterium
thermophilum RBL67 GN=D805_1423 PE=4 SV=1
Length = 299
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 63/140 (45%), Gaps = 29/140 (20%)
Query: 130 LTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVA 189
+ +I LSY GG + GW +QP L TVQ +E L T + ++++ VTVA
Sbjct: 1 MRLRIDLSYDGGGYHGWARQPDLRTVQGELEHALATILRLADEREVR---------VTVA 51
Query: 190 GRTDKGVTALQQVCSFYTWKKDVKPRDIEDAI---------------YHAAPGKLRVISV 234
GRTD GV AL QVC D+ P ++ I H P + + S+
Sbjct: 52 GRTDTGVHALGQVCHV-----DISPEVLDSCIGHMQANGVEALERRLKHVLPDDIVIRSI 106
Query: 235 SEVSRAFHPNFSAKWRRYLY 254
S F FSA R Y+Y
Sbjct: 107 SRAPDGFDARFSALERTYVY 126
>D1C2N5_SPHTD (tr|D1C2N5) tRNA pseudouridine synthase A OS=Sphaerobacter
thermophilus (strain DSM 20745 / S 6022) GN=truA PE=3
SV=1
Length = 271
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 63/126 (50%), Gaps = 16/126 (12%)
Query: 131 TFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAG 190
TF++ L Y G +F G Q+QPG+ TVQ + E+ ++L G P V +AG
Sbjct: 9 TFRVDLGYDGSAFFGSQRQPGVRTVQGAL---------ESAAERLA--GEPTR--VALAG 55
Query: 191 RTDKGVTALQQVCSFYT-WKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKW 249
RTD+GV A+ QV S W + ++ A+ P L V EV FH FSA+W
Sbjct: 56 RTDRGVHAVGQVASLRIRWARSAD--ELARALMALTPDDLVVYGAREVDERFHARFSARW 113
Query: 250 RRYLYI 255
R Y Y
Sbjct: 114 REYRYF 119
>R7JJD5_9BACT (tr|R7JJD5) tRNA pseudouridine synthase A OS=Alistipes putredinis
CAG:67 GN=BN752_00357 PE=4 SV=1
Length = 265
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 61/125 (48%), Gaps = 13/125 (10%)
Query: 130 LTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVA 189
+ + I L Y+GG++ GWQ+QP + +VQ IEG + T + E PI +T A
Sbjct: 1 MRYFIELRYNGGAYCGWQRQPDMPSVQQTIEGAISTLLRE-----------PI--LLTGA 47
Query: 190 GRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKW 249
GRTD GV A V F T P + + H PG + V + V+ H FSA+
Sbjct: 48 GRTDTGVNASYYVAHFDTSSPVADPEQVVFKLNHMLPGDIAVSRIVPVAADAHARFSARE 107
Query: 250 RRYLY 254
R Y Y
Sbjct: 108 REYRY 112
>I7JAI4_9RICK (tr|I7JAI4) tRNA pseudouridine synthase A OS=Wolbachia endosymbiont
of Onchocerca ochengi GN=truA PE=3 SV=1
Length = 245
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 63/127 (49%), Gaps = 16/127 (12%)
Query: 130 LTFKIVLSYHGGSFDGWQKQP-GLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTV 188
+ +KI Y+G SF GWQKQ N++Q IE + F E T +
Sbjct: 1 MRYKITTEYNGSSFSGWQKQQHSSNSIQETIENAIFNFSGEKIT-------------LHC 47
Query: 189 AGRTDKGVTALQQVCSFYTWKKDVKPRDIEDAI-YHAAPGKLRVISVSEVSRAFHPNFSA 247
GRTD GV AL+QV F +++ K I AI YH + V++V V+ AFH FSA
Sbjct: 48 GGRTDAGVHALEQVAHF-DMEREFKLHRIRTAINYHLKSVPVVVLNVETVNDAFHSRFSA 106
Query: 248 KWRRYLY 254
K R Y Y
Sbjct: 107 KKRHYEY 113
>G2SIB1_RHOMR (tr|G2SIB1) tRNA pseudouridine synthase A OS=Rhodothermus marinus
SG0.5JP17-172 GN=truA PE=3 SV=1
Length = 252
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 67/257 (26%), Positives = 103/257 (40%), Gaps = 58/257 (22%)
Query: 131 TFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAG 190
T+++++ Y G F GWQ Q ++Q+ +E L + E + I GS G
Sbjct: 3 TYRLLIEYDGTDFSGWQIQRNGPSIQAALEEALAVVLRER---------VRIVGS----G 49
Query: 191 RTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWR 250
RTD GV A QV F T + V P ++ ++ P + + V+ FH + A+WR
Sbjct: 50 RTDAGVHARGQVAHFCT-NRPVDPERLQGSLNGLLPPSIAIREVAPAPDNFHARYDARWR 108
Query: 251 RYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSV---SKVNR 307
RY Y + ++ LE + Y+ +++NR
Sbjct: 109 RYHY----------------------------YVATVPCALERHLRWYLRPAPDFARMNR 140
Query: 308 LLQKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELV 367
L G + F R A+RN C +Y AR + D E+V
Sbjct: 141 AACDLLGT-HDFTTFCRTQAATRNR----TCTVYLARWVP--------DPRPGDWHFEIV 187
Query: 368 ANRFLRRMVRVLVATSI 384
A+RFL MVR +V T I
Sbjct: 188 ADRFLHGMVRAIVGTLI 204
>G9PW72_9BACT (tr|G9PW72) tRNA pseudouridine synthase A OS=Synergistes sp.
3_1_syn1 GN=truA PE=3 SV=1
Length = 252
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 61/121 (50%), Gaps = 14/121 (11%)
Query: 136 LSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKG 195
+SY GG F GWQ QPGL+TVQ + E ++ R P+ G AGRTD G
Sbjct: 8 VSYDGGKFFGWQIQPGLSTVQRSL---------EEAVSKINGRHTPVAG----AGRTDAG 54
Query: 196 VTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYLYI 255
V A QVCSF ++ +PR + A+ P + ++ + V FH FSA+ R Y Y
Sbjct: 55 VHARAQVCSF-DMERPWEPRRLLLAVNAHLPEGVSLMRAAAVPGDFHARFSAREREYRYF 113
Query: 256 F 256
Sbjct: 114 I 114
>C9R8G0_AMMDK (tr|C9R8G0) tRNA pseudouridine synthase A OS=Ammonifex degensii
(strain DSM 10501 / KC4) GN=truA PE=3 SV=1
Length = 259
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 61/121 (50%), Gaps = 14/121 (11%)
Query: 136 LSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKG 195
++Y G +F G+Q+QPGL TVQ V+E L E T Q+K AGRTD G
Sbjct: 10 VAYDGTAFSGFQRQPGLRTVQGVLEEALARLTKE--TCQVKG-----------AGRTDAG 56
Query: 196 VTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYLYI 255
V A QV SF T PR + A+ P + V++ +EV FHP + A + Y Y
Sbjct: 57 VHAEGQVVSFRTASSIPTPRLV-PALNGLLPPDVAVLAAAEVPEQFHPRYDAVSKVYRYT 115
Query: 256 F 256
F
Sbjct: 116 F 116
>F2JSF8_CELLD (tr|F2JSF8) tRNA pseudouridine synthase A OS=Cellulosilyticum
lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB 11756
/ RHM5) GN=truA PE=3 SV=1
Length = 245
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 63/124 (50%), Gaps = 16/124 (12%)
Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
FK++++Y G +++G+ KQP T+Q ++ + V +++ G AGR
Sbjct: 4 FKLIVAYDGTNYNGFAKQPNATTIQGTLDVAIAKIVQ----HEVRTLG---------AGR 50
Query: 192 TDKGVTALQQVCSFYTWKKDVKPRD-IEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWR 250
TD+GV A Q C F + K P D + AI P + V SV EVS FHP F AK +
Sbjct: 51 TDRGVHAFAQCCVFDSDTK--IPADRLAKAINSQLPADISVKSVEEVSEDFHPRFGAKRK 108
Query: 251 RYLY 254
Y Y
Sbjct: 109 TYRY 112
>B0MSW4_9BACT (tr|B0MSW4) tRNA pseudouridine synthase A OS=Alistipes putredinis
DSM 17216 GN=truA PE=3 SV=1
Length = 390
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 100/256 (39%), Gaps = 54/256 (21%)
Query: 130 LTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVA 189
+ + I L Y+GG++ GWQ+QP + +VQ IEG + T + E PI +T A
Sbjct: 126 MRYFIELRYNGGAYCGWQRQPDMPSVQQTIEGAISTLLRE-----------PI--LLTGA 172
Query: 190 GRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKW 249
GRTD GV A V F T P + + H PG + V + V+ H FSA+
Sbjct: 173 GRTDTGVNASYYVAHFDTSSPVADPEQVVFKLNHMLPGDIAVSRIVPVAADAHARFSARE 232
Query: 250 RRY-LYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRL 308
R Y YI P R N S+ + V
Sbjct: 233 REYRYYIEP--------------------RKNPF----------TRAASWQYYVPLDVAA 262
Query: 309 LQKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVA 368
+ + L+ Y+ F K + ++ C L A R +C + A
Sbjct: 263 MNRAADVLMEYEDFTSFAKLN-SDNKTNICHLKRADWTVGR---------DGTLCFTIRA 312
Query: 369 NRFLRRMVRVLVATSI 384
+RFLR MVR +V T +
Sbjct: 313 DRFLRNMVRAIVGTLV 328
>R6GWK3_9FIRM (tr|R6GWK3) tRNA pseudouridine synthase A OS=Firmicutes bacterium
CAG:552 GN=BN704_00687 PE=4 SV=1
Length = 239
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 65/131 (49%), Gaps = 15/131 (11%)
Query: 130 LTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVA 189
+ +K+ + Y G F GWQ QPG +TVQ IE L E+ + I GS
Sbjct: 1 MRYKVTVEYDGSDFCGWQLQPGKSTVQGAIENALAALTGES---------IRITGS---- 47
Query: 190 GRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKW 249
GRTD GV A QV F + KD+K + + + P +R+ ++ E + FH FSA
Sbjct: 48 GRTDAGVHAKGQVFHFDS-AKDMKGK-WRSGLNYYLPQSVRITAIEESDQNFHARFSAIN 105
Query: 250 RRYLYIFPLTD 260
+ Y Y+F L D
Sbjct: 106 KTYKYLFLLRD 116
>E3H678_ILYPC (tr|E3H678) tRNA pseudouridine synthase A OS=Ilyobacter polytropus
(strain DSM 2926 / CuHBu1) GN=truA PE=3 SV=1
Length = 243
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 63/126 (50%), Gaps = 16/126 (12%)
Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
KI Y G F G+Q+QP TVQ IE L + E E ++ +GR
Sbjct: 4 IKIEYEYDGSGFFGFQRQPSARTVQGEIESALKVVLKE-------------EINLASSGR 50
Query: 192 TDKGVTALQQVCSFYTWKKDVKPRD-IEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWR 250
TD+GV A QV +F+T K P D +E A+ + P +++ S+ VS FH FSAK R
Sbjct: 51 TDRGVHAYMQVSNFFTSSKI--PLDRLEFAVKNLIPEDIKIHSMKNVSEEFHARFSAKSR 108
Query: 251 RYLYIF 256
Y YI
Sbjct: 109 AYEYIM 114
>I3DGM8_9FUSO (tr|I3DGM8) tRNA pseudouridine synthase A OS=Fusobacterium
necrophorum subsp. funduliforme ATCC 51357 GN=truA PE=3
SV=1
Length = 242
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 67/256 (26%), Positives = 108/256 (42%), Gaps = 60/256 (23%)
Query: 133 KIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRT 192
KI Y G SF G+Q+QP TVQ IE L + E + +T +GRT
Sbjct: 5 KISYQYDGSSFMGFQRQPNQRTVQGEIEKSLFHILRE-------------KIDLTSSGRT 51
Query: 193 DKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRY 252
D+GV A+QQV +F+T ++ + A+ P + ++ V EV FH FSAK R Y
Sbjct: 52 DRGVHAIQQVSNFFT-AVNIPSDRLFYALSRNLPEDILLLQVEEVDSEFHARFSAKTRSY 110
Query: 253 LYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYM---FSVSKVNRLL 309
Y + K+ E+ K+Y+ ++ ++L
Sbjct: 111 RYCI----------------------------TWKKNPFEHRYKAYVKEKIESTEFLKIL 142
Query: 310 QKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVAN 369
Q GK +++ F A N P E + +E M I++VAN
Sbjct: 143 QVFVGK-HNFQNFRLQDSAFAN--PMREIYSISVEEVENG------------MNIDIVAN 187
Query: 370 RFLRRMVRVLVATSIR 385
FL+ +R+++ T+++
Sbjct: 188 AFLKSQIRIMIGTALQ 203
>B1WQT7_CYAA5 (tr|B1WQT7) tRNA pseudouridine synthase A OS=Cyanothece sp. (strain
ATCC 51142) GN=truA PE=3 SV=1
Length = 286
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 58/123 (47%), Gaps = 14/123 (11%)
Query: 134 IVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTD 193
+V+ Y GG F GWQ+QP TVQ IE + Q+ +PI G AGRTD
Sbjct: 15 LVIQYQGGRFHGWQRQPTQRTVQEDIETSIA---------QVLGYHVPIHG----AGRTD 61
Query: 194 KGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYL 253
GV A QV F + P+ D + P + V +EV +H FSA WRRY
Sbjct: 62 AGVHAAAQVAHFDD-VSPIPPQRWADILNQRLPDDILVRGSAEVPLTWHARFSALWRRYR 120
Query: 254 YIF 256
Y F
Sbjct: 121 YTF 123
>G6GPE9_9CHRO (tr|G6GPE9) tRNA pseudouridine synthase A OS=Cyanothece sp. ATCC
51472 GN=truA PE=3 SV=1
Length = 286
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 58/123 (47%), Gaps = 14/123 (11%)
Query: 134 IVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTD 193
+V+ Y GG F GWQ+QP TVQ IE + Q+ +PI G AGRTD
Sbjct: 15 LVIQYQGGRFHGWQRQPTQRTVQEDIETSIA---------QVLGYHVPIHG----AGRTD 61
Query: 194 KGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYL 253
GV A QV F + P+ D + P + V +EV +H FSA WRRY
Sbjct: 62 AGVHAAAQVAHFDD-VSPIPPQRWADILNQRLPDDILVRGSAEVPLTWHARFSALWRRYR 120
Query: 254 YIF 256
Y F
Sbjct: 121 YTF 123
>E1KTU2_9BACT (tr|E1KTU2) tRNA pseudouridine synthase A OS=Prevotella disiens
FB035-09AN GN=truA PE=3 SV=1
Length = 255
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 102/254 (40%), Gaps = 45/254 (17%)
Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
+ I SY G ++ GWQ QP +VQ V+E L T L + SVT AGR
Sbjct: 4 YFIKFSYDGTNYHGWQIQPNGISVQEVLEKALSTL-------------LRTKMSVTGAGR 50
Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
TD GV A V F W+ + + + + P + VISV V H FSA R
Sbjct: 51 TDAGVHARLMVAHF-DWEAPIDGQQLAYKLNRMLPRDVSVISVEAVENELHARFSATSRT 109
Query: 252 YLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQK 311
Y Y ++ ++ S + + Y ++N +
Sbjct: 110 YHYYM------HRGRNPFSRAY-------------------SYEMPYELDFERMNEAAKY 144
Query: 312 LEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADND-EETRVMCIELVANR 370
L G+ +K F + + + T C L AR +A ++ E+ C + ANR
Sbjct: 145 LIGE-RDFKCFCK----AGGDNKTTICNLTEARWQHCNTEIAIHEAEKAEEWCFVITANR 199
Query: 371 FLRRMVRVLVATSI 384
FLR MVR +V T +
Sbjct: 200 FLRNMVRAVVGTLV 213
>E7ACU3_HELFC (tr|E7ACU3) tRNA pseudouridine synthase A OS=Helicobacter felis
(strain ATCC 49179 / NCTC 12436 / CS1) GN=truA PE=3 SV=1
Length = 246
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 62/124 (50%), Gaps = 17/124 (13%)
Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
F+++L+Y G +F G+ KQP L +V+ +E L LK L I + AGR
Sbjct: 4 FQMLLAYDGSAFYGYAKQPNLPSVEGALESAL-----------LK---LGISSPILCAGR 49
Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
TD+GV AL QV SF T + + ++ + P + + EV FHP F A WR
Sbjct: 50 TDRGVHALCQVISFST---PLSLQTLQRHLPPKLPAPILCKGIQEVPLDFHPRFDATWRL 106
Query: 252 YLYI 255
Y YI
Sbjct: 107 YRYI 110
>B3QNY5_CHLP8 (tr|B3QNY5) tRNA pseudouridine synthase A OS=Chlorobaculum parvum
(strain NCIB 8327) GN=truA PE=3 SV=1
Length = 238
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 74/250 (29%), Positives = 100/250 (40%), Gaps = 55/250 (22%)
Query: 136 LSYHGGSFDGWQKQPG-LNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDK 194
+ Y G + GWQ+QPG + TVQ IE LG E P+ S+ AGRTD+
Sbjct: 3 IEYDGTDYSGWQRQPGDVVTVQGEIERVLGRITQE-----------PV--SIDGAGRTDR 49
Query: 195 GVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYLY 254
GV A QV SF + R + A P +R+ S+ +V +FH FSA R Y Y
Sbjct: 50 GVHARGQVASFAVASEMPLGRMMHSA-NSLLPSTIRITSMRQVPESFHARFSATSREYRY 108
Query: 255 IFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQKLEG 314
+ + +G S K D V +NRL L G
Sbjct: 109 VLLERPSAIDSRFAGC--------------SHGKPD-----------VVLMNRLAAMLVG 143
Query: 315 KLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVANRFLRR 374
+ F+++T + T C + AR + R + ANRFLR
Sbjct: 144 T-HDFAAFSKETPDQQG----TLCTVTEARWYRS----------GRFHVFRIEANRFLRS 188
Query: 375 MVRVLVATSI 384
MVR LVA I
Sbjct: 189 MVRFLVAGMI 198
>A6C4N8_9PLAN (tr|A6C4N8) tRNA pseudouridine synthase A OS=Planctomyces maris DSM
8797 GN=truA PE=3 SV=1
Length = 267
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/258 (25%), Positives = 107/258 (41%), Gaps = 45/258 (17%)
Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
K+ L+Y G + GWQ QP +VQ+ +E + E TQQ V VAGR
Sbjct: 4 IKLTLAYDGSEYAGWQVQPNGPSVQACVEKAI-----EQLTQQ--------RSPVLVAGR 50
Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
TD GV AL QV SF T + + ++++ + P + V V EV FH +SA +R
Sbjct: 51 TDAGVHALGQVASFQT-ESAIPCKNLQTGLQRFLPESICVREVREVPPDFHATYSAIQKR 109
Query: 252 YLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSY-------MFSVSK 304
Y Y+ + Y EF L ++ +H + + +++ + + SV
Sbjct: 110 YRYVIHNSAVPYPFLKKYVSEFGRPLDSDRMHAAGQQLLGQHDFRCFESHYPNKATSVRT 169
Query: 305 VNRLLQKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCI 364
+ L + G + + +A L + +N + +
Sbjct: 170 ITELTVQRTGVWPVWGVLE-----------------------QAHLSM-ENSTSAEFITV 205
Query: 365 ELVANRFLRRMVRVLVAT 382
++VA+ FL MVR +V T
Sbjct: 206 DVVADGFLYNMVRAIVGT 223
>F0RSJ5_SPHGB (tr|F0RSJ5) tRNA pseudouridine synthase A OS=Sphaerochaeta globosa
(strain ATCC BAA-1886 / DSM 22777 / Buddy) GN=truA PE=3
SV=1
Length = 281
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 54/125 (43%), Gaps = 13/125 (10%)
Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
++ +SYHG + GWQKQ +V +IE L +DE E V +GR
Sbjct: 21 IRMTVSYHGSHYSGWQKQSNAKSVAEIIEQTLKQILDE-------------EVQVVGSGR 67
Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
TD GV AL QVC +K A+ P +R++ E FH ++ R
Sbjct: 68 TDSGVHALAQVCHMDIANTRIKGEKFALALNRLLPADIRILDSCETDGTFHARYTTMART 127
Query: 252 YLYIF 256
Y Y +
Sbjct: 128 YRYYY 132
>F9PQE1_9FIRM (tr|F9PQE1) tRNA pseudouridine synthase A OS=Parvimonas sp. oral
taxon 393 str. F0440 GN=truA PE=3 SV=1
Length = 247
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 63/125 (50%), Gaps = 14/125 (11%)
Query: 134 IVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTD 193
+ +SY G F G+QKQ + TVQ IE L EN ++ AGRTD
Sbjct: 6 LTISYDGSLFFGFQKQDDVITVQGEIESALKKITGENI-------------NIISAGRTD 52
Query: 194 KGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYL 253
+GV +L+ + +F+T + +V + + A+ H P +RV+ EVS FH F A + Y
Sbjct: 53 RGVHSLRHIINFHT-ESNVGVLNFKTALNHFLPIGVRVLDSKEVSEDFHSRFDATMKTYK 111
Query: 254 YIFPL 258
YI L
Sbjct: 112 YILNL 116
>R5TDT0_9CLOT (tr|R5TDT0) tRNA pseudouridine synthase A OS=Clostridium sp.
CAG:762 GN=BN775_00635 PE=4 SV=1
Length = 249
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/251 (27%), Positives = 104/251 (41%), Gaps = 47/251 (18%)
Query: 134 IVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTD 193
I+ SY G +F G+QKQ TVQ +E L D K + V +GRTD
Sbjct: 6 IIFSYDGTNFKGYQKQIKERTVQGELEKALKEINDNKKVE------------VHASGRTD 53
Query: 194 KGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYL 253
GV A+ Q F K + ++ A+ P + + V EV FH F+AK + Y+
Sbjct: 54 AGVHAINQKAHFDLATK-ITSDKLKKALNSILPNDIYIKKVEEVDDNFHARFNAKGKEYI 112
Query: 254 YIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQKLE 313
Y+ + GE+ RN + D +E E R ++ LE
Sbjct: 113 YLINM------------GEYNPIERNYVYQYNKKLDTVEME------------RAMKYLE 148
Query: 314 GKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVANRFLR 373
G ++ F TK ++E P E ++ R I + D + R+ + V FLR
Sbjct: 149 G-THDFRAF---TKIDKDE--PKEDYV---RTISQTNLIRDIKDVNRLTLV-FVGTGFLR 198
Query: 374 RMVRVLVATSI 384
MVR +V T I
Sbjct: 199 YMVRNMVGTLI 209
>I3YRA3_ALIFI (tr|I3YRA3) tRNA pseudouridine synthase A OS=Alistipes finegoldii
(strain DSM 17242 / JCM 16770 / AHN 2437 / CCUG 46020 /
CIP 107999) GN=truA PE=3 SV=1
Length = 254
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/255 (26%), Positives = 102/255 (40%), Gaps = 52/255 (20%)
Query: 130 LTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVA 189
+ + + L Y+G ++ GWQ+QP + +VQ +E L T + E IE VT A
Sbjct: 1 MRYFLELRYNGAAYCGWQRQPDMPSVQQTLERALTTLLREK-----------IE--VTGA 47
Query: 190 GRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKW 249
GRTD GV A V F + P + + PG + V S++ V H F+A+
Sbjct: 48 GRTDTGVNASYYVAHFDCEEPVPDPAQVVYKLNFLLPGDIAVGSMTPVGADAHARFAARE 107
Query: 250 RRYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLL 309
R Y Y + + +N D+ ++ + V +
Sbjct: 108 REYRY------------------YIEPRKNPFTRDA-----------TWQYYVPLDMERM 138
Query: 310 QKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVAN 369
+ LL Y F K + N C + HA A +E V+C + A+
Sbjct: 139 NEAAASLLEYDDFTSFAKLNSNN-KTNICRIMHA---------AWTADERGVLCFTIRAD 188
Query: 370 RFLRRMVRVLVATSI 384
RFLR MVR LV T +
Sbjct: 189 RFLRNMVRSLVGTLV 203
>L8DKP4_9NOCA (tr|L8DKP4) tRNA pseudouridine synthase A OS=Rhodococcus sp.
AW25M09 GN=truA PE=3 SV=1
Length = 298
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 70/144 (48%), Gaps = 27/144 (18%)
Query: 130 LTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVA 189
+ +++ +SY G F GW +QPG+ TV V+E T + + PIE +TVA
Sbjct: 25 VRYRLDISYDGTDFSGWARQPGIRTVCGVLEEAFSTVLRQ-----------PIE--LTVA 71
Query: 190 GRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAA---PGKLRVISVSEVSRAFHPNFS 246
GRTD GV A QV F + P D + + A P +RV ++SEVSR F FS
Sbjct: 72 GRTDAGVHATGQVAHFDAVE---IPGDHDRLVRRMARFLPTDVRVRTISEVSRDFDARFS 128
Query: 247 AKWRRYLYIF--------PLTDGG 262
A R Y Y F PL GG
Sbjct: 129 AYRRHYEYRFSTARYGVDPLDVGG 152
>I4EJ07_9CHLR (tr|I4EJ07) tRNA pseudouridine synthase A OS=Nitrolancetus
hollandicus Lb GN=truA PE=3 SV=1
Length = 289
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 64/124 (51%), Gaps = 16/124 (12%)
Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
F+I L Y G F G Q+QPG TVQ+V+E L +QL G PI + +AGR
Sbjct: 6 FRIDLGYDGTDFAGSQRQPGQRTVQAVVEQAL---------EQLS--GQPIR--IALAGR 52
Query: 192 TDKGVTALQQVCS-FYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWR 250
TD+GV A+ QV S + W++ D+ A+ P + + V AFH FSA +R
Sbjct: 53 TDRGVHAVGQVASGWINWERSAD--DLARALQAVTPEDVAIYGARAVDAAFHARFSACYR 110
Query: 251 RYLY 254
Y Y
Sbjct: 111 EYRY 114
>E4MD25_9BACT (tr|E4MD25) tRNA pseudouridine synthase A OS=Alistipes sp. HGB5
GN=truA PE=3 SV=1
Length = 257
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 72/256 (28%), Positives = 101/256 (39%), Gaps = 54/256 (21%)
Query: 130 LTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVA 189
+ + + L Y+G ++ GWQ+QP + +VQ +E L T + E IE VT A
Sbjct: 4 MRYFLELRYNGAAYCGWQRQPDMPSVQQTLERALTTLLREK-----------IE--VTGA 50
Query: 190 GRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKW 249
GRTD GV A V F + P + + PG + V S++ V H F+A+
Sbjct: 51 GRTDTGVNASYYVAHFDCEEPVPDPAQVVYKLNFLLPGDIAVGSMTPVGADAHARFAARE 110
Query: 250 RRY-LYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRL 308
R Y YI P + +D + D R NE S
Sbjct: 111 REYRYYIEPRKNPFTRDATWQYYVPLDMERMNEAAAS----------------------- 147
Query: 309 LQKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVA 368
LL Y F K + N C + HA A +E V+C + A
Sbjct: 148 -------LLEYDDFTSFAKLNSNN-KTNICRIMHA---------AWTADERGVLCFTIRA 190
Query: 369 NRFLRRMVRVLVATSI 384
+RFLR MVR LV T +
Sbjct: 191 DRFLRNMVRSLVGTLV 206
>B6B8U3_9RHOB (tr|B6B8U3) tRNA pseudouridine synthase A OS=Rhodobacterales
bacterium Y4I GN=truA PE=3 SV=1
Length = 255
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 61/124 (49%), Gaps = 15/124 (12%)
Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
F + + YHG F GWQ+Q L +VQ IE L R P E ++ AGR
Sbjct: 4 FALKVEYHGKPFAGWQRQKDLPSVQGAIEAALA-------------RLEPGEHTIAAAGR 50
Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAI-YHAAPGKLRVISVSEVSRAFHPNFSAKWR 250
TD GV AL QV + KD P + +A+ YH P + ++ + V +H FSA R
Sbjct: 51 TDTGVHALGQV-AHCDMAKDWDPFRLSEALNYHLKPDPVAIVGCARVDDDWHARFSAVER 109
Query: 251 RYLY 254
+YL+
Sbjct: 110 QYLF 113
>R5XB99_9CLOT (tr|R5XB99) tRNA pseudouridine synthase A 1 OS=Clostridium
bartlettii CAG:1329 GN=BN488_00049 PE=4 SV=1
Length = 243
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 64/139 (46%), Gaps = 17/139 (12%)
Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
KI L Y+G ++ GWQKQP +Q +E + E E VT +GR
Sbjct: 4 LKITLQYNGKNYCGWQKQPNALGIQGTVEKAIYEITKE-------------EVKVTASGR 50
Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
TD GV AL QV +F T K R + DA+ P + +IS EV FH ++A +
Sbjct: 51 TDAGVHALGQVANFKTESKIPADR-LPDALNAKLPKDISIISCEEVDIDFHARYNACGKT 109
Query: 252 YLYIF---PLTDGGYKDQS 267
Y Y+ P YKD S
Sbjct: 110 YRYLIYNKPYRSPLYKDLS 128
>M5J7N7_9LACO (tr|M5J7N7) tRNA pseudouridine synthase OS=Lactobacillus saerimneri
30a GN=D271_00300 PE=4 SV=1
Length = 253
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 62/123 (50%), Gaps = 12/123 (9%)
Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
+K+ ++Y G +F G+QKQP TVQSVIE L NKT D + I GS GR
Sbjct: 5 YKVTIAYDGTNFAGFQKQPQQRTVQSVIEDALNKM---NKT----DEHIFIVGS----GR 53
Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
TD GV AL QV F + D+ ++ + P L V V +FH FS +R
Sbjct: 54 TDAGVHALAQVIHF-DFPHDIPALGMKRGLNSMLPLDLEVKDCEIVDDSFHARFSTHGKR 112
Query: 252 YLY 254
Y+Y
Sbjct: 113 YMY 115
>K9EWN2_9CYAN (tr|K9EWN2) tRNA pseudouridine synthase A OS=Leptolyngbya sp. PCC
7375 GN=truA PE=3 SV=1
Length = 292
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 67/149 (44%), Gaps = 34/149 (22%)
Query: 114 EFESVASRGRGGRWARLTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQ 173
+ E+V +G + IV+ Y G F GWQ+QP TVQ+ IE + + + +N T
Sbjct: 9 QLEAVPKANKGNQ----RVAIVIQYQGTHFYGWQRQPAKRTVQAEIEAAIASLLGDNVT- 63
Query: 174 QLKDRGLPIEGSVTVAGRTDKGVTALQQVCSF--------YTWKKDVKPRDIEDAIYHAA 225
I G AGRTD GV A QV F Y W + R ED + AA
Sbjct: 64 --------IHG----AGRTDTGVHAAAQVAHFDAPKIIPAYRWASILNHRLSEDIVIRAA 111
Query: 226 PGKLRVISVSEVSRAFHPNFSAKWRRYLY 254
++V +H +SA+WRRY Y
Sbjct: 112 ---------AQVPDDWHAQYSAQWRRYRY 131
>J9GBR9_9ZZZZ (tr|J9GBR9) tRNA pseudouridine synthase A (Fragment) OS=gut
metagenome GN=EVA_15034 PE=4 SV=1
Length = 114
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 60/124 (48%), Gaps = 14/124 (11%)
Query: 131 TFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAG 190
T K+V++Y G S+ G+QKQ + VQ+VIE L E + GS G
Sbjct: 3 TIKLVVAYDGNSYHGFQKQKNVVAVQNVIEEALSKICGE---------AVATAGS----G 49
Query: 191 RTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWR 250
RTD GV A Q +F T + ++ A+ P + IS E+ FH FSAKW+
Sbjct: 50 RTDAGVHAWAQTITFET-NGRIPCANMIRALSSLLPADIVAISAEEMEAGFHARFSAKWK 108
Query: 251 RYLY 254
RY Y
Sbjct: 109 RYQY 112
>G2ED72_9FLAO (tr|G2ED72) tRNA pseudouridine synthase A OS=Bizionia argentinensis
JUB59 GN=truA PE=3 SV=1
Length = 249
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 103/255 (40%), Gaps = 54/255 (21%)
Query: 130 LTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVA 189
+ + I LSY+G ++ GWQ QP +VQ VIE L T + + + +V A
Sbjct: 1 MRYFIELSYNGQAYHGWQNQPNAISVQEVIEKALSTILGQ-------------KTAVVGA 47
Query: 190 GRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKW 249
GRTD GV A Q F T D + + P + V +V V+ H F A
Sbjct: 48 GRTDAGVHAKQMFAHFET-DADFSIEKLSYKLNAFLPEDIAVHNVFSVTPEAHARFHATS 106
Query: 250 RRYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLL 309
R YLY L + QS+ +F K LE +N+ +
Sbjct: 107 RTYLYRIALDKSAFNYQSA----YF------------VKKKLE------------INK-M 137
Query: 310 QKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVAN 369
Q LL+YK F +K+ T+ Y+ ++ D + + + A+
Sbjct: 138 QAAANSLLNYKDFQCFSKS------KTDVNTYNCNIMQVHFEQVDGE-----LHFTIQAD 186
Query: 370 RFLRRMVRVLVATSI 384
RFLR MVR +V T I
Sbjct: 187 RFLRNMVRAIVGTLI 201
>E3ERA5_BIFBS (tr|E3ERA5) tRNA pseudouridine synthase A OS=Bifidobacterium
bifidum (strain S17) GN=truA PE=3 SV=1
Length = 298
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 104/270 (38%), Gaps = 46/270 (17%)
Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
+I L+Y GG F GW KQP + TVQ IE L T + D P+ +TVAGR
Sbjct: 1 MRIDLAYDGGGFFGWAKQPTIRTVQGEIERVLHTIT----RVPVDDPAEPLR--LTVAGR 54
Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAA---------------PGKLRVISVSE 236
TD GV A QVC D+ + + H + P + + V+
Sbjct: 55 TDTGVHASHQVCHL-----DIGEETLSRCVGHMSVPPTVALKHRLQRMLPADITIHDVTV 109
Query: 237 VSRAFHPNFSAKWRRYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLE-NET 295
F FSA R Y+Y D++S E LR +H + D + NE
Sbjct: 110 APSGFDARFSALERTYVY-------RVADRAS---EVDPRLRGFVLHLDADLDVVAMNEA 159
Query: 296 KSYMFSVSKVNRLLQKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADN 355
+ + G R+ K + PT + R P A++
Sbjct: 160 AAMTIGLHDFGSFATPNPGGTT-----IREVKTAYWRRIPTRPLVVDGMGERYRTPAAES 214
Query: 356 DEETRVMCIELVANRFLRRMVRVLVATSIR 385
D ++C +VA+ F R MVR LV I+
Sbjct: 215 D----LLCFTIVADAFARNMVRSLVGGCIQ 240
>R5UF28_9BACT (tr|R5UF28) tRNA pseudouridine synthase A OS=Alistipes finegoldii
CAG:68 GN=BN754_02376 PE=4 SV=1
Length = 254
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 108/256 (42%), Gaps = 54/256 (21%)
Query: 130 LTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVA 189
+ + + L Y+G ++ GWQ+QP + +VQ +E L T + RG IE VT A
Sbjct: 1 MRYFLELRYNGAAYCGWQRQPDMPSVQQTLERALTTLL----------RG-KIE--VTGA 47
Query: 190 GRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKW 249
GRTD GV A V F + P + + PG + V S++ V H F+A+
Sbjct: 48 GRTDTGVNASYYVAHFDCAEPVPDPAQVVYKLNFLLPGDIAVGSMTPVGADAHARFAARE 107
Query: 250 RRY-LYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRL 308
R Y YI P + +D + +++ L + ++++++
Sbjct: 108 REYRYYIEPRKNPFTRD---ATWQYYVPLDMDRMNEAAA--------------------- 143
Query: 309 LQKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVA 368
LL Y F K + N C + HA A +E V+C + A
Sbjct: 144 ------ALLEYDDFTSFAKLNSNN-KTNICRIMHA---------AWTADERGVLCFTIRA 187
Query: 369 NRFLRRMVRVLVATSI 384
NRFLR MVR LV T +
Sbjct: 188 NRFLRNMVRSLVGTLV 203
>I4ZAV1_9BACT (tr|I4ZAV1) tRNA pseudouridine synthase A OS=Prevotella bivia DSM
20514 GN=truA PE=3 SV=1
Length = 255
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 101/258 (39%), Gaps = 51/258 (19%)
Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
+ I LSY G + GWQ QP ++VQ +E + + E PI ++ AGR
Sbjct: 4 YFITLSYDGSKYHGWQIQPNGSSVQETLEKAISVLLRE-----------PI--AIIGAGR 50
Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
TD GV A V F + V + + P + V + V+ H FSA R
Sbjct: 51 TDAGVHARMMVAHF-DFTGSVDCHQMVYRLNRLLPHDISVSKIEPVTNDLHARFSASRRT 109
Query: 252 YLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKD-DLENETKSYMFSVSKVNRLLQ 310
Y Y Y+ Q S + S + D DL NE Y+
Sbjct: 110 YHYYLHTQKNIYQRQYS-------------CYMSYALDFDLMNEAAQYLIGTK------- 149
Query: 311 KLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEAR----LPLADNDEETRVMCIEL 366
+K F + + + T C L AR + R +PL+ ++ T C +
Sbjct: 150 -------DFKCFCK----AGADVKTTICELTEARWVPIRAELSMPLSSKEQPTD-WCFII 197
Query: 367 VANRFLRRMVRVLVATSI 384
ANRFLR MVR +V T +
Sbjct: 198 SANRFLRNMVRAVVGTLV 215
>D1XYC0_9BACT (tr|D1XYC0) tRNA pseudouridine synthase A OS=Prevotella bivia
JCVIHMP010 GN=truA PE=3 SV=1
Length = 255
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 101/258 (39%), Gaps = 51/258 (19%)
Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
+ I LSY G + GWQ QP ++VQ +E + + E PI ++ AGR
Sbjct: 4 YFITLSYDGSKYHGWQIQPNGSSVQETLEKAISVLLRE-----------PI--AIIGAGR 50
Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
TD GV A V F + V + + P + V + V+ H FSA R
Sbjct: 51 TDAGVHARMMVAHF-DFTGSVDCHQMVYRLNRLLPHDISVSKIEPVTNDLHARFSASRRT 109
Query: 252 YLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKD-DLENETKSYMFSVSKVNRLLQ 310
Y Y Y+ Q S + S + D DL NE Y+
Sbjct: 110 YHYYLHTQKNIYQRQYS-------------CYMSYALDFDLMNEAAQYLIGTK------- 149
Query: 311 KLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEAR----LPLADNDEETRVMCIEL 366
+K F + + + T C L AR + R +PL+ ++ T C +
Sbjct: 150 -------DFKCFCK----AGADVKTTICELTEARWVPIRAELSMPLSSKEQPTD-WCFII 197
Query: 367 VANRFLRRMVRVLVATSI 384
ANRFLR MVR +V T +
Sbjct: 198 SANRFLRNMVRAVVGTLV 215
>H1BNT2_9FIRM (tr|H1BNT2) tRNA pseudouridine synthase A OS=Eubacterium sp. 3_1_31
GN=truA PE=3 SV=1
Length = 251
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 62/125 (49%), Gaps = 14/125 (11%)
Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
+K V+SY G S+ GWQKQ ++Q VIE L + ++ +GR
Sbjct: 4 YKAVVSYDGSSYGGWQKQLNTTSIQEVIEQALAKMHKHD-------------VAIVASGR 50
Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
TD GV A+ QV F + K ++ + A+ P +R+ SV +V+ AFH F A +R
Sbjct: 51 TDAGVHAIAQVFHFDSEMK-IQEKHWIKALNSLLPKDIRIQSVKQVTEAFHARFDAIGKR 109
Query: 252 YLYIF 256
Y Y+
Sbjct: 110 YDYLI 114
>D6HS44_9FIRM (tr|D6HS44) tRNA pseudouridine synthase A OS=Erysipelotrichaceae
bacterium 5_2_54FAA GN=truA PE=3 SV=1
Length = 251
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 62/125 (49%), Gaps = 14/125 (11%)
Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
+K V+SY G S+ GWQKQ ++Q VIE L + ++ +GR
Sbjct: 4 YKAVVSYDGSSYGGWQKQLNTTSIQEVIEQALAKMHKHD-------------VAIVASGR 50
Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
TD GV A+ QV F + K ++ + A+ P +R+ SV +V+ AFH F A +R
Sbjct: 51 TDAGVHAIAQVFHFDSEMK-IQEKHWIKALNSLLPKDIRIQSVKQVTEAFHARFDAIGKR 109
Query: 252 YLYIF 256
Y Y+
Sbjct: 110 YDYLI 114
>N1ZLC8_9LACO (tr|N1ZLC8) tRNA pseudouridine synthase A OS=Lactobacillus murinus
ASF361 GN=C822_01437 PE=4 SV=1
Length = 250
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 60/123 (48%), Gaps = 12/123 (9%)
Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
+ I L+Y G +F G+Q QP TVQSV+E L NK + D + I GS GR
Sbjct: 5 YMITLAYDGTNFAGFQAQPKQRTVQSVLEKAL------NKMSKFDDY-ITIYGS----GR 53
Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
TD GV AL QV F + D+ P + + P VI VS FH F+ +R
Sbjct: 54 TDSGVHALGQVIHF-DFPHDISPEGMLKGLNSMLPLDCEVIDCKIVSDDFHARFTTHGKR 112
Query: 252 YLY 254
Y+Y
Sbjct: 113 YMY 115
>F2MKK7_LACCD (tr|F2MKK7) tRNA pseudouridine synthase A OS=Lactobacillus casei
(strain BD-II) GN=truA PE=3 SV=1
Length = 247
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 104/253 (41%), Gaps = 49/253 (19%)
Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
+K+ L+Y G +F G+Q QP TVQ V++ L T+ K + + ++GS GR
Sbjct: 4 YKVTLAYDGTNFAGYQVQPKQRTVQGVLQKAL--------TKMTKGQPVHVDGS----GR 51
Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
TD GV AL QV SF + ++ + A+ P + ++ V FH +SAK +R
Sbjct: 52 TDSGVHALGQVISF-DYPGNIPAESMLKAMNSLMPLDIEILKAEIVDADFHARYSAKGKR 110
Query: 252 YLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQK 311
YLY R + ++ + L Y V ++ L+
Sbjct: 111 YLY-----------------------RVARGYYTNPFNRLYTGHYPYKLDVQRIEVALKD 147
Query: 312 LEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVANRF 371
L G + FA AS +Y A E D T + E N F
Sbjct: 148 LVGT-HDFTSFA----ASGGVIVDKVRTIYEATVRE--------DPVTNEIIFEFYGNGF 194
Query: 372 LRRMVRVLVATSI 384
L MVR+LVAT++
Sbjct: 195 LYNMVRILVATAL 207
>F2MC17_LACCC (tr|F2MC17) tRNA pseudouridine synthase A OS=Lactobacillus casei
(strain LC2W) GN=truA PE=3 SV=1
Length = 247
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 104/253 (41%), Gaps = 49/253 (19%)
Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
+K+ L+Y G +F G+Q QP TVQ V++ L T+ K + + ++GS GR
Sbjct: 4 YKVTLAYDGTNFAGYQVQPKQRTVQGVLQKAL--------TKMTKGQPVHVDGS----GR 51
Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
TD GV AL QV SF + ++ + A+ P + ++ V FH +SAK +R
Sbjct: 52 TDSGVHALGQVISF-DYPGNIPAESMLKAMNSLMPLDIEILKAEIVDADFHARYSAKGKR 110
Query: 252 YLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQK 311
YLY R + ++ + L Y V ++ L+
Sbjct: 111 YLY-----------------------RVARGYYTNPFNRLYTGHYPYKLDVQRIEVALKD 147
Query: 312 LEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVANRF 371
L G + FA AS +Y A E D T + E N F
Sbjct: 148 LVGT-HDFTSFA----ASGGVIVDKVRTIYEATVRE--------DPVTNEIIFEFYGNGF 194
Query: 372 LRRMVRVLVATSI 384
L MVR+LVAT++
Sbjct: 195 LYNMVRILVATAL 207
>D8GCI2_LACCZ (tr|D8GCI2) tRNA pseudouridine synthase A OS=Lactobacillus casei
(strain Zhang) GN=truA PE=3 SV=1
Length = 247
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 104/253 (41%), Gaps = 49/253 (19%)
Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
+K+ L+Y G +F G+Q QP TVQ V++ L T+ K + + ++GS GR
Sbjct: 4 YKVTLAYDGTNFAGYQVQPKQRTVQGVLQKAL--------TKMTKGQPVHVDGS----GR 51
Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
TD GV AL QV SF + ++ + A+ P + ++ V FH +SAK +R
Sbjct: 52 TDSGVHALGQVISF-DYPGNIPAESMLKAMNSLMPLDIEILKAEIVDADFHARYSAKGKR 110
Query: 252 YLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQK 311
YLY R + ++ + L Y V ++ L+
Sbjct: 111 YLY-----------------------RVARGYYTNPFNRLYTGHYPYKLDVQRIEVALKD 147
Query: 312 LEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVANRF 371
L G + FA AS +Y A E D T + E N F
Sbjct: 148 LVGT-HDFTSFA----ASGGVIVDKVRTIYEATVRE--------DPVTNEIIFEFYGNGF 194
Query: 372 LRRMVRVLVATSI 384
L MVR+LVAT++
Sbjct: 195 LYNMVRILVATAL 207
>B3EQM8_CHLPB (tr|B3EQM8) tRNA pseudouridine synthase A OS=Chlorobium
phaeobacteroides (strain BS1) GN=truA PE=3 SV=1
Length = 233
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 71/258 (27%), Positives = 109/258 (42%), Gaps = 56/258 (21%)
Query: 134 IVLSYHGGSFDGWQKQP-GLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRT 192
+ + Y G F GWQKQP G+ TVQ V+E L V E E +T AGRT
Sbjct: 1 MTIEYDGTDFSGWQKQPEGVVTVQGVLETTLSRIVQE-------------EVVMTAAGRT 47
Query: 193 DKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRY 252
D+GV A QV +F T R + ++ P + + + EV +FH +SA +R Y
Sbjct: 48 DRGVHARGQVANFRTASCLSTGRLLH-SLNALLPSTVCIRDMQEVPDSFHARYSALFREY 106
Query: 253 LYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQKL 312
Y F ++ S G+ + + + V ++NR +L
Sbjct: 107 RYFF-------LEKPSALGKRYAGVYGGRL------------------DVDRLNRCAGEL 141
Query: 313 EGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVANRFL 372
G+ + +A++ + T C ++ A DE+ + + ANRFL
Sbjct: 142 VGR-HDFSAYAKEDA----QNGSTFCTVFGA-------SWGRQDEK---VVFRIAANRFL 186
Query: 373 RRMVRVLVATSIREAAAG 390
R MVR LV+ + EA G
Sbjct: 187 RTMVRFLVSAQL-EAGPG 203
>R8ZUA2_9LEPT (tr|R8ZUA2) tRNA pseudouridine(38-40) synthase OS=Leptospira
yanagawae serovar Saopaulo str. Sao Paulo = ATCC 700523
GN=truA PE=4 SV=1
Length = 264
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 71/251 (28%), Positives = 99/251 (39%), Gaps = 47/251 (18%)
Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
+ +++ Y G F+GWQKQ L TVQS IE L + +N +L +VAGR
Sbjct: 4 YALLVEYDGTHFNGWQKQKNLPTVQSSIESALDIILRKNPASRL-----------SVAGR 52
Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
TD GV AL VC+F T + ++ + V +V EV FH FS R
Sbjct: 53 TDTGVHALGMVCNFKTRDPIPNFHKLLVSLNSLTQSGVSVKNVIEVPPEFHARFSCTGRE 112
Query: 252 YLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQK 311
Y+Y + ++SS + KS++ KV R LQ
Sbjct: 113 YIYKLYYSK----------------------YESSFVEGRAFWVKSHI-DWDKVERQLQV 149
Query: 312 LEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVANRF 371
L G+ K F TKA G RA+ + I + AN F
Sbjct: 150 LVGE----KDFRSLTKAKSMSG---------KRAVREIFSIQLEKITPEWYQIRIRANGF 196
Query: 372 LRRMVRVLVAT 382
+ MVR+ V T
Sbjct: 197 MHNMVRITVGT 207
>D5ARE1_RHOCB (tr|D5ARE1) tRNA pseudouridine synthase A OS=Rhodobacter capsulatus
(strain ATCC BAA-309 / NBRC 16581 / SB1003) GN=truA PE=3
SV=1
Length = 255
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 63/127 (49%), Gaps = 17/127 (13%)
Query: 129 RLTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTV 188
R F+I Y GG F GWQ+Q L +VQ +E L R P E ++
Sbjct: 3 RFAFRI--EYDGGPFAGWQRQAVLPSVQGAVEAALA-------------RLEPGEHTIAA 47
Query: 189 AGRTDKGVTALQQVCSFYTWKKDVKPRDIEDAI-YHAAPGKLRVISVSEVSRAFHPNFSA 247
AGRTD GV A QV + KD P + +A+ +H P + +++ + V FH FSA
Sbjct: 48 AGRTDAGVHATAQV-AHADLAKDWDPFRLSEALNHHLRPDPVAIVACARVGDDFHARFSA 106
Query: 248 KWRRYLY 254
+ RRYL+
Sbjct: 107 RERRYLF 113
>J4UAW8_9FIRM (tr|J4UAW8) tRNA pseudouridine synthase A OS=Eubacterium sp. AS15
GN=truA PE=3 SV=1
Length = 245
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 60/121 (49%), Gaps = 14/121 (11%)
Query: 134 IVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTD 193
I +SY G ++ GWQ+Q ++Q IE + +E E +V +GRTD
Sbjct: 6 IEISYDGTNYSGWQRQKNAISIQEKIEDAISLICNE-------------EINVIASGRTD 52
Query: 194 KGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYL 253
GV AL Q+ +F T + + + AI P +R++S EV F+ FSAK + Y+
Sbjct: 53 AGVHALSQIANFNTSSR-IDAKKFAKAINTKLPDDIRILSSKEVDEDFNARFSAKKKTYV 111
Query: 254 Y 254
Y
Sbjct: 112 Y 112
>D2R418_PIRSD (tr|D2R418) tRNA pseudouridine synthase A OS=Pirellula staleyi
(strain ATCC 27377 / DSM 6068 / ICPB 4128) GN=truA PE=3
SV=1
Length = 285
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 63/135 (46%), Gaps = 16/135 (11%)
Query: 131 TFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAG 190
TFK+ L+Y G +F GWQ QP TVQ +E + T + +G
Sbjct: 3 TFKLTLAYDGTNFGGWQWQPNRRTVQDELEKAVETITG-------------VRSRFVASG 49
Query: 191 RTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWR 250
RTD GV AL QV +F + + + P + + P + + V EV AFHP A +
Sbjct: 50 RTDAGVHALGQVAAFSS-ETGIDPAGLLKGLNAKVPDDIFIFDVVEVPLAFHPIRDAVRK 108
Query: 251 RYLYIFPLTDGGYKD 265
RY Y+ + DG +D
Sbjct: 109 RYRYV--VQDGPLRD 121
>I0FBE1_BORCA (tr|I0FBE1) tRNA pseudouridine synthase A OS=Borrelia crocidurae
(strain Achema) GN=truA PE=3 SV=1
Length = 245
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 107/253 (42%), Gaps = 60/253 (23%)
Query: 136 LSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKG 195
++Y G + G+Q QP T+Q IE L NKT+ + AGRTDKG
Sbjct: 8 IAYDGSLYHGFQIQPTKPTIQGEIEKALEKI---NKTK----------VKIQSAGRTDKG 54
Query: 196 VTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYLYI 255
V A +Q+ SFY K ++ ++++ AI +R+I + VS F P F AK R+Y Y
Sbjct: 55 VHAKRQIISFYI-KININLKNLKTAINSLLKNDIRIIKLKYVSNEFQPRFHAKKRKYTY- 112
Query: 256 FPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYM----FSVSKVNRLLQK 311
+ NNE H E K+Y +++++N + +
Sbjct: 113 --------------------YILNNENHYPWE------EYKAYYVRKKLNINRLNTMAEM 146
Query: 312 LEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVANRF 371
L G L + F+ C + + LA ++ + + E++ + F
Sbjct: 147 LIG-LHDFTTFS--------------CIRDKTNSKLKEIYLAKFKKKNKFIVFEIIGSSF 191
Query: 372 LRRMVRVLVATSI 384
L +MVR +V T I
Sbjct: 192 LWKMVRSIVGTMI 204
>E8WYA8_ACISM (tr|E8WYA8) tRNA pseudouridine synthase A OS=Acidobacterium sp.
(strain MP5ACTX9) GN=truA PE=3 SV=1
Length = 258
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 62/127 (48%), Gaps = 15/127 (11%)
Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
+K+ L+Y G ++ GWQ QPGL TVQ + L E Q GS GR
Sbjct: 4 WKMTLAYDGTAYHGWQVQPGLPTVQGRLAAALKLLTGETVLPQ---------GS----GR 50
Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
TD GV AL QV SF + + ++ A+ A PG +RV+SV V FH A +
Sbjct: 51 TDAGVHALGQVVSF-GLEAPIPGENLLRALNRALPGAIRVLSVEAVEAEFHARRGAVRKT 109
Query: 252 YLY-IFP 257
Y Y +FP
Sbjct: 110 YEYRLFP 116
>C1DWJ7_SULAA (tr|C1DWJ7) tRNA pseudouridine synthase A OS=Sulfurihydrogenibium
azorense (strain Az-Fu1 / DSM 15241 / OCM 825) GN=truA
PE=3 SV=1
Length = 244
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 74/258 (28%), Positives = 106/258 (41%), Gaps = 65/258 (25%)
Query: 129 RLTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTV 188
R +K+ +SY G + GWQ+Q +Q +IE L E T +
Sbjct: 4 RYNYKLTISYIGTRYSGWQRQKNAVGIQQIIEDLLEKLFKEKIT-------------LIG 50
Query: 189 AGRTDKGVTALQQVCSFYTWK-KDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSA 247
+GRTD GV AL QV +F T+ KD P I + P + V V EV F+ FSA
Sbjct: 51 SGRTDAGVHALNQVANFKTYSYKD--PSTIYSYLNAKLPRDISVKKVEEVDLNFNARFSA 108
Query: 248 KWRRYLY-IFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVN 306
K + YLY I+ D G G FFD DL+ +
Sbjct: 109 KGKTYLYRIYTKPD----PFLYGRGWFFDK-------------DLD------------IV 139
Query: 307 RLLQKLEGKLLSYK---MFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMC 363
++LQ +E L YK A++ R E E LY+ + +++
Sbjct: 140 KMLQGIE-ILKKYKDLTSLAKEGNYIRKEVDLREIKLYY---------------DGKIID 183
Query: 364 IELVANRFLRRMVRVLVA 381
IE+ A+ FLR +VR +V
Sbjct: 184 IEITASHFLRNLVRRIVG 201
>K6R823_LACCA (tr|K6R823) tRNA pseudouridine synthase A OS=Lactobacillus casei
CRF28 GN=truA PE=3 SV=1
Length = 247
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 104/253 (41%), Gaps = 49/253 (19%)
Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
+K+ L+Y G +F G+Q QP TVQ V++ L T+ K + + ++GS GR
Sbjct: 4 YKVTLAYDGTNFAGYQVQPKQRTVQGVLQKAL--------TKMTKGQLVHVDGS----GR 51
Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
TD GV AL QV SF + ++ + A+ P + ++ V FH +SAK +R
Sbjct: 52 TDSGVHALGQVISF-DYPGNIPAESMLKAMNSLMPLDIEILKAEIVDADFHARYSAKGKR 110
Query: 252 YLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQK 311
YLY R + ++ + L Y V ++ L+
Sbjct: 111 YLY-----------------------RVARGYYTNPFNRLYTGHYPYKLDVQRIEVALKD 147
Query: 312 LEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVANRF 371
L G + FA AS +Y A E D T + E N F
Sbjct: 148 LVGT-HDFTSFA----ASGGVIVDKVRTIYEATVRE--------DPVTNEIIFEFYGNGF 194
Query: 372 LRRMVRVLVATSI 384
L MVR+LVAT++
Sbjct: 195 LYNMVRILVATAL 207
>E4NZ31_BIFBP (tr|E4NZ31) tRNA pseudouridine synthase A OS=Bifidobacterium
bifidum (strain PRL2010) GN=truA PE=3 SV=1
Length = 303
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 73/272 (26%), Positives = 104/272 (38%), Gaps = 46/272 (16%)
Query: 130 LTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVA 189
+ +I L+Y GG F GW KQP + TVQ IE L T + D P+ +TVA
Sbjct: 4 MRLRIDLAYDGGGFFGWAKQPTIRTVQGEIERVLHTI----TRVPVDDPAEPLR--LTVA 57
Query: 190 GRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAA---------------PGKLRVISV 234
GRTD GV A QVC D+ + + H + P + + V
Sbjct: 58 GRTDTGVHASHQVCHL-----DIGEETLSRCVGHMSVPPTVALKHRLQRMLPADITIHDV 112
Query: 235 SEVSRAFHPNFSAKWRRYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIH-DSSSKDDLEN 293
+ F FSA R Y+Y D++S E LR +H D+ N
Sbjct: 113 TVAPSGFDARFSALERTYVY-------RVADRAS---EVDPRLRGFVLHLDADLDVAAMN 162
Query: 294 ETKSYMFSVSKVNRLLQKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLA 353
E + + G R+ K + PT + R P A
Sbjct: 163 EAAAMTIGLHDFGSFATPNPGGTT-----IREVKTAYWRRIPTRPLVVDGMGERYRTPAA 217
Query: 354 DNDEETRVMCIELVANRFLRRMVRVLVATSIR 385
++D ++C +VA+ F R MVR LV I+
Sbjct: 218 ESD----LLCFTIVADAFARNMVRSLVGGCIQ 245
>K2IRF8_BIFBI (tr|K2IRF8) tRNA pseudouridine synthase A OS=Bifidobacterium
bifidum LMG 13195 GN=truA PE=3 SV=1
Length = 303
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 73/272 (26%), Positives = 104/272 (38%), Gaps = 46/272 (16%)
Query: 130 LTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVA 189
+ +I L+Y GG F GW KQP + TVQ IE L T + D P+ +TVA
Sbjct: 4 MRLRIDLAYDGGGFFGWAKQPTIRTVQGEIERVLHTI----TRVPVDDPAEPLR--LTVA 57
Query: 190 GRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAA---------------PGKLRVISV 234
GRTD GV A QVC D+ + + H + P + + V
Sbjct: 58 GRTDTGVHASHQVCHL-----DIGEETLSRCVGHMSVPPTVALKHRLQRMLPADITIHDV 112
Query: 235 SEVSRAFHPNFSAKWRRYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIH-DSSSKDDLEN 293
+ F FSA R Y+Y D++S E LR +H D+ N
Sbjct: 113 TVAPSGFDARFSALERTYVY-------RVADRAS---EVDPRLRGFVLHLDADLDVAAMN 162
Query: 294 ETKSYMFSVSKVNRLLQKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLA 353
E + + G R+ K + PT + R P A
Sbjct: 163 EAAAMTIGLHDFGSFATPNPGGTT-----IREVKTAYWRRIPTRPLVVDGMGERYRTPAA 217
Query: 354 DNDEETRVMCIELVANRFLRRMVRVLVATSIR 385
++D ++C +VA+ F R MVR LV I+
Sbjct: 218 ESD----LLCFTIVADAFARNMVRSLVGGCIQ 245
>E0QJU7_9FIRM (tr|E0QJU7) tRNA pseudouridine synthase A OS=Eubacterium yurii
subsp. margaretiae ATCC 43715 GN=truA PE=3 SV=1
Length = 245
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 58/119 (48%), Gaps = 14/119 (11%)
Query: 136 LSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKG 195
+SY G ++ GWQ+Q ++Q IE + +E E +V +GRTD G
Sbjct: 8 ISYDGTNYSGWQRQKNAISIQEKIEDAISLICNE-------------EINVIASGRTDAG 54
Query: 196 VTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYLY 254
V AL Q+ +F T + + AI P +R++S EV F+ FSAK + Y+Y
Sbjct: 55 VHALSQIANFST-SSSIDAKKFAKAINTKLPDDIRILSSKEVDEDFNARFSAKKKTYIY 112
>E3GGZ0_EUBLK (tr|E3GGZ0) tRNA pseudouridine synthase A OS=Eubacterium limosum
(strain KIST612) GN=truA PE=3 SV=1
Length = 244
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 66/139 (47%), Gaps = 17/139 (12%)
Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
+++++Y G + GWQ+QP TV+ + G + E T + GS GR
Sbjct: 4 IQMIIAYKGTRYAGWQRQPNAPTVEEALTGAIKAVTGETVT---------LYGS----GR 50
Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
TD GV AL Q F+T + V P A+ PG +RV+S E FH +SAK +
Sbjct: 51 TDAGVHALGQSAHFHTESR-VPPERFAAALNTRLPGDIRVLSSCEAPEGFHSRYSAKGKV 109
Query: 252 Y---LYIFPLTDGGYKDQS 267
Y LY+ P+ Y + S
Sbjct: 110 YTYQLYLNPVLSPFYAEYS 128
>D8IMD1_LACSC (tr|D8IMD1) tRNA pseudouridine synthase A OS=Lactobacillus
salivarius (strain CECT 5713) GN=truA PE=3 SV=1
Length = 256
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 101/251 (40%), Gaps = 48/251 (19%)
Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
FK+ L+Y G +F G+Q QP TVQ V+E + NK + KD + + GS GR
Sbjct: 5 FKVTLAYDGTNFAGFQAQPNQRTVQFVLEKAI------NKMSK-KDEYITVYGS----GR 53
Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
TD GV AL QV F + + + + + P V+ V FH ++ +R
Sbjct: 54 TDSGVHALGQVVHF-DFPHPISAKGMLRGLNSMLPLDCEVVDCKIVPNDFHSRYTTHGKR 112
Query: 252 YLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQK 311
YLY GEF + + L Y + K+ +
Sbjct: 113 YLY------------RVSRGEFVNPFKR-----------LYTGHYKYPLDIEKIKEAMPD 149
Query: 312 LEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVANRF 371
+EG Y F AS ++ +Y A+ E ++ NDE + E N F
Sbjct: 150 VEGT-HDYSSFV----ASGSQAKSHVRTIYEAKVYEDKV----NDE----IVFEFYGNGF 196
Query: 372 LRRMVRVLVAT 382
L VR++VAT
Sbjct: 197 LYNQVRIMVAT 207
>C7TM62_LACRL (tr|C7TM62) tRNA pseudouridine synthase A OS=Lactobacillus
rhamnosus (strain Lc 705) GN=truA PE=3 SV=1
Length = 247
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 107/254 (42%), Gaps = 51/254 (20%)
Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
+K+ L+Y G +F G+Q QP TVQ V++ L T+ K + + ++GS GR
Sbjct: 4 YKVTLAYDGTNFAGYQVQPKQRTVQGVLQKAL--------TKMAKGQPVHVDGS----GR 51
Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
TD GV AL QV SF + ++ + A+ P + ++ V+ FH +SAK +R
Sbjct: 52 TDSGVHALGQVISF-DYPGNIPAESMLRAMNSLMPLDIEILKAEIVAADFHARYSAKGKR 110
Query: 252 YLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQK 311
Y Y R + ++ + L Y V ++ L+
Sbjct: 111 YRY-----------------------RVARGYYTNPFNRLYTGHYPYKLDVKRIEVALKD 147
Query: 312 LEGKLLSYKMFARDTKASRNEGPPTECFLYHARAI-EARLPLADNDEETRVMCIELVANR 370
L G + FA +++ R I EA + + D T + E N
Sbjct: 148 LVGT-HDFTSFAASGGVIKDK----------VRTIYEATV---EEDPATNELIFEFYGNG 193
Query: 371 FLRRMVRVLVATSI 384
FL MVR+LVAT++
Sbjct: 194 FLYNMVRILVATAL 207
>G7UYT6_LACRH (tr|G7UYT6) tRNA pseudouridine synthase A OS=Lactobacillus
rhamnosus ATCC 8530 GN=truA PE=3 SV=1
Length = 247
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 107/254 (42%), Gaps = 51/254 (20%)
Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
+K+ L+Y G +F G+Q QP TVQ V++ L T+ K + + ++GS GR
Sbjct: 4 YKVTLAYDGTNFAGYQVQPKQRTVQGVLQKAL--------TKMAKGQPVHVDGS----GR 51
Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
TD GV AL QV SF + ++ + A+ P + ++ V+ FH +SAK +R
Sbjct: 52 TDSGVHALGQVISF-DYPGNIPAESMLRAMNSLMPLDIEILKAEIVAADFHARYSAKGKR 110
Query: 252 YLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQK 311
Y Y R + ++ + L Y V ++ L+
Sbjct: 111 YRY-----------------------RVARGYYTNPFNRLYTGHYPYKLDVKRIEVALKD 147
Query: 312 LEGKLLSYKMFARDTKASRNEGPPTECFLYHARAI-EARLPLADNDEETRVMCIELVANR 370
L G + FA +++ R I EA + + D T + E N
Sbjct: 148 LVGT-HDFTSFAASGGVIKDK----------VRTIYEATV---EEDPATNELIFEFYGNG 193
Query: 371 FLRRMVRVLVATSI 384
FL MVR+LVAT++
Sbjct: 194 FLYNMVRILVATAL 207
>E1JMM5_9LACO (tr|E1JMM5) tRNA pseudouridine synthase A OS=Lactobacillus
salivarius ACS-116-V-Col5a GN=truA PE=3 SV=1
Length = 256
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 101/251 (40%), Gaps = 48/251 (19%)
Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
FK+ L+Y G +F G+Q QP TVQ V+E + NK + KD + + GS GR
Sbjct: 5 FKVTLAYDGTNFAGFQAQPNQRTVQFVLEKAI------NKMSK-KDEYITVYGS----GR 53
Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
TD GV AL QV F + + + + + P V+ V FH ++ +R
Sbjct: 54 TDSGVHALGQVVHF-DFPHPISAKGMLRGLNSMLPLDCEVVDCKIVPNDFHSRYTTHGKR 112
Query: 252 YLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQK 311
YLY GEF + + L Y + K+ +
Sbjct: 113 YLY------------RVSRGEFVNPFKR-----------LYTGHYKYPLDIEKIKEAMPD 149
Query: 312 LEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVANRF 371
+EG Y F AS ++ +Y A+ E ++ NDE + E N F
Sbjct: 150 VEGT-HDYSSFV----ASGSQAKSHVRTIYEAKVYEDKV----NDE----IVFEFYGNGF 196
Query: 372 LRRMVRVLVAT 382
L VR++VAT
Sbjct: 197 LYNQVRIMVAT 207
>R5LA20_9SPIR (tr|R5LA20) tRNA pseudouridine synthase A OS=Brachyspira sp.
CAG:700 GN=BN758_01530 PE=4 SV=1
Length = 248
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 59/126 (46%), Gaps = 13/126 (10%)
Query: 130 LTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVA 189
KI++ Y G F GWQ QP L T+Q I + Q++ + + I G
Sbjct: 2 FNIKIIVQYDGTDFCGWQIQPNLRTIQGEIYKAV---------QKIYSKKITIYG----C 48
Query: 190 GRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKW 249
GRTD GV AL QV +F K V + A+ P +R+IS + F+ SA +
Sbjct: 49 GRTDAGVHALGQVANFRIPKMLVPIEKVHIALNSCLPKDIRIISAEIMPENFNARASANF 108
Query: 250 RRYLYI 255
R YLYI
Sbjct: 109 REYLYI 114
>C2EHF2_9LACO (tr|C2EHF2) tRNA pseudouridine synthase A OS=Lactobacillus
salivarius ATCC 11741 GN=truA PE=3 SV=1
Length = 256
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 101/251 (40%), Gaps = 48/251 (19%)
Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
FK+ L+Y G +F G+Q QP TVQ V+E + NK + KD + + GS GR
Sbjct: 5 FKVTLAYDGTNFAGFQAQPNQRTVQFVLEKAI------NKMSK-KDEYITVYGS----GR 53
Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
TD GV AL QV F + + + + + P V+ V FH ++ +R
Sbjct: 54 TDSGVHALGQVVHF-DFPHPISAKGMLRGLNSMLPLDCEVVDCKIVPNDFHSRYTTHGKR 112
Query: 252 YLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQK 311
YLY GEF + + L Y + K+ +
Sbjct: 113 YLY------------RVSRGEFVNPFKR-----------LYTGHYKYPLDIEKIKEAMPD 149
Query: 312 LEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVANRF 371
+EG Y F AS ++ +Y A+ E ++ NDE + E N F
Sbjct: 150 VEGT-HDYSSFV----ASGSQAKSHVRTIYEAKVYEDKV----NDE----IVFEFYGNGF 196
Query: 372 LRRMVRVLVAT 382
L VR++VAT
Sbjct: 197 LYNQVRIMVAT 207
>E7NVA1_TREPH (tr|E7NVA1) tRNA pseudouridine synthase A OS=Treponema phagedenis
F0421 GN=truA PE=3 SV=1
Length = 261
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 104/253 (41%), Gaps = 52/253 (20%)
Query: 136 LSYHGGSFDGWQKQP--GLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTD 193
+SY G F GWQKQ G+ T + I+G + E ++ + I G AGRTD
Sbjct: 11 ISYDGTFFSGWQKQVKNGIETFPT-IQGEI-----EKAASKIHKQKKEIIG----AGRTD 60
Query: 194 KGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYL 253
GV A+ Q +F+T + ++ + A P ++RV+ EVS H FSA+ R Y
Sbjct: 61 TGVHAIGQAANFFTEIQTIEAKSFIPAFNSLLPKQIRVVDAQEVSPQLHARFSAQARTYR 120
Query: 254 YIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQKLE 313
Y F + H+ + + K Y +S +NR L
Sbjct: 121 Y------------------FIQCAKREFAHEQA----YCWQIKRYP-DISTLNRYAAVLR 157
Query: 314 GKL-LSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVANRFL 372
G+L + FA+D AS++ + F E + E+ AN FL
Sbjct: 158 GELDCTSFSFAKDQSASKSRYIFSAHFFI----------------EKDFLVFEISANAFL 201
Query: 373 RRMVRVLVATSIR 385
RMVR L T +R
Sbjct: 202 WRMVRSLTGTLLR 214
>I3WJN9_BIFBI (tr|I3WJN9) tRNA pseudouridine synthase A OS=Bifidobacterium
bifidum BGN4 GN=truA PE=3 SV=1
Length = 304
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 73/272 (26%), Positives = 104/272 (38%), Gaps = 46/272 (16%)
Query: 130 LTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVA 189
+ +I L+Y GG F GW KQP + TVQ IE L T + D P+ +TVA
Sbjct: 5 MRLRIDLAYDGGGFFGWAKQPTIRTVQGEIERVLHTI----TRVPVDDPAEPLR--LTVA 58
Query: 190 GRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAA---------------PGKLRVISV 234
GRTD GV A QVC D+ + + H + P + + V
Sbjct: 59 GRTDTGVHASHQVCHL-----DIGEETLSRCVGHMSVPPTVALKHRLQRMLPADITIHDV 113
Query: 235 SEVSRAFHPNFSAKWRRYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIH-DSSSKDDLEN 293
+ F FSA R Y+Y D++S E LR +H D+ N
Sbjct: 114 TVAPSGFDARFSALERTYVY-------RVADRAS---EVDPRLRGFVLHLDADLDVAAMN 163
Query: 294 ETKSYMFSVSKVNRLLQKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLA 353
E + + G R+ K + PT + R P A
Sbjct: 164 EAAAMTIGLHDFGSFATPNPGGTT-----IREVKTAYWRRIPTRPLVVDGMGERYRTPAA 218
Query: 354 DNDEETRVMCIELVANRFLRRMVRVLVATSIR 385
++D ++C +VA+ F R MVR LV I+
Sbjct: 219 ESD----LLCFTIVADAFARNMVRSLVGGCIQ 246
>J4VU16_9FUSO (tr|J4VU16) tRNA pseudouridine synthase A OS=Fusobacterium
necrophorum subsp. funduliforme Fnf 1007 GN=truA PE=3
SV=1
Length = 242
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 63/253 (24%), Positives = 103/253 (40%), Gaps = 54/253 (21%)
Query: 133 KIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRT 192
KI Y G SF G+Q+QP TVQ IE L + E + +T +GRT
Sbjct: 5 KISYQYDGSSFMGFQRQPNQRTVQGEIEKSLFHILRE-------------KIDLTSSGRT 51
Query: 193 DKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRY 252
D+GV A+QQV +F+T ++ + A+ P + ++ V EV FH FSAK R Y
Sbjct: 52 DRGVHAIQQVSNFFT-AVNIPSDRLFYALSRNLPEDILLLQVEEVDSEFHARFSAKTRSY 110
Query: 253 LYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQKL 312
Y + K+ E+ K+Y+ + L+ L
Sbjct: 111 RYCI----------------------------TWKKNPFEHRYKAYVKEKIESTEFLKIL 142
Query: 313 EGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVANRFL 372
+ + + + S P E + +E M I++VAN FL
Sbjct: 143 QVFIGRHNFQNFRLQDSSFANPMREIYSISVEEVENG------------MNIDIVANAFL 190
Query: 373 RRMVRVLVATSIR 385
+ +R+++ T+++
Sbjct: 191 KSQIRIMIGTALQ 203
>E5BNB6_9FUSO (tr|E5BNB6) tRNA pseudouridine synthase A OS=Fusobacterium sp. D12
GN=truA PE=3 SV=1
Length = 242
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 63/253 (24%), Positives = 103/253 (40%), Gaps = 54/253 (21%)
Query: 133 KIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRT 192
KI Y G SF G+Q+QP TVQ IE L + E + +T +GRT
Sbjct: 5 KISYQYDGSSFMGFQRQPNQRTVQGEIEKSLFHILRE-------------KIDLTSSGRT 51
Query: 193 DKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRY 252
D+GV A+QQV +F+T ++ + A+ P + ++ V EV FH FSAK R Y
Sbjct: 52 DRGVHAIQQVSNFFT-AVNIPSDRLFYALSRNLPEDILLLQVEEVDSEFHARFSAKTRSY 110
Query: 253 LYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQKL 312
Y + K+ E+ K+Y+ + L+ L
Sbjct: 111 RYCI----------------------------TWKKNPFEHRYKAYVKEKIESTEFLKIL 142
Query: 313 EGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVANRFL 372
+ + + + S P E + +E M I++VAN FL
Sbjct: 143 QVFIGRHNFQNFRLQDSSFANPMREIYSISVEEVENG------------MNIDIVANAFL 190
Query: 373 RRMVRVLVATSIR 385
+ +R+++ T+++
Sbjct: 191 KSQIRIMIGTALQ 203
>F2KYJ5_PREDF (tr|F2KYJ5) tRNA pseudouridine synthase A OS=Prevotella denticola
(strain F0289) GN=truA PE=3 SV=1
Length = 255
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 78/257 (30%), Positives = 99/257 (38%), Gaps = 51/257 (19%)
Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
+ I LSY G ++ GWQ QP +VQ V+E L + E T VT AGR
Sbjct: 6 YFITLSYDGTAYHGWQIQPNGISVQEVLERSLSILLKETIT-------------VTGAGR 52
Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHA---APGKLRVISVSEVSRAFHPNFSAK 248
TD GV V F T +P D E +Y P + V + VS H FSA
Sbjct: 53 TDAGVHGRMMVAHFDT----AQPFDSEQLVYKMNRLLPRDVSVSRIKAVSADLHARFSAV 108
Query: 249 WRRYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRL 308
R Y Y + + S EIH D + NE SY
Sbjct: 109 SRTYHYYIHTGKQPFSRRYS-----------CEIHYPLDFDKM-NEAASY---------- 146
Query: 309 LQKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRV-MCIELV 367
L+ K F KA + T C L AR I + L+ + T C +
Sbjct: 147 -------LIGEKDFKCFCKAGADV-KTTFCNLTEARWIPSGDGLSLSSGGTIANWCFVIT 198
Query: 368 ANRFLRRMVRVLVATSI 384
ANRFLR MVR +V T +
Sbjct: 199 ANRFLRNMVRAVVGTLV 215
>G5J7Y7_CROWT (tr|G5J7Y7) tRNA pseudouridine synthase A OS=Crocosphaera watsonii
WH 0003 GN=truA PE=3 SV=1
Length = 285
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 56/123 (45%), Gaps = 14/123 (11%)
Query: 134 IVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTD 193
+V+ Y G F GWQ+QP TVQ IE + Q+ PI G AGRTD
Sbjct: 15 LVIQYQGSRFHGWQRQPNQRTVQEDIETAIA---------QVLGYHTPIHG----AGRTD 61
Query: 194 KGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYL 253
GV A QV F + + P+ D + H P + + V +H FSA WRRY
Sbjct: 62 AGVHAAAQVAHF-DYVSPIPPQRWADILNHRLPEDILIRGSQGVPATWHARFSALWRRYR 120
Query: 254 YIF 256
Y F
Sbjct: 121 YSF 123
>H7FX09_9LACO (tr|H7FX09) tRNA pseudouridine synthase A OS=Lactobacillus
salivarius SMXD51 GN=truA PE=3 SV=1
Length = 256
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 101/251 (40%), Gaps = 48/251 (19%)
Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
FK+ L+Y G +F G+Q QP TVQ V+E + NK + KD + + GS GR
Sbjct: 5 FKVTLAYDGTNFAGFQAQPNQRTVQFVLEKAI------NKMSK-KDEYITVYGS----GR 53
Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
TD GV AL QV F + + + + + P V+ V FH ++ +R
Sbjct: 54 TDSGVHALGQVVHF-DFPHPISAKGMLRGLNSMLPLDCEVVDCKIVPNDFHSRYTTHGKR 112
Query: 252 YLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQK 311
YLY GEF + + L Y + K+ +
Sbjct: 113 YLY------------RVSRGEFVNPFKR-----------LYTGHYKYPLDIEKIKEAMPD 149
Query: 312 LEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVANRF 371
+EG Y F AS ++ +Y A+ E ++ NDE + E N F
Sbjct: 150 VEGT-HDYSSFV----ASGSQAKSHVRTIYEAKVYEDKV----NDE----IIFEFYGNGF 196
Query: 372 LRRMVRVLVAT 382
L VR++VAT
Sbjct: 197 LYNQVRIMVAT 207
>F7QTS2_9LACO (tr|F7QTS2) tRNA pseudouridine synthase A OS=Lactobacillus
salivarius GJ-24 GN=truA PE=3 SV=1
Length = 256
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 101/251 (40%), Gaps = 48/251 (19%)
Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
FK+ L+Y G +F G+Q QP TVQ V+E + NK + KD + + GS GR
Sbjct: 5 FKVTLAYDGTNFAGFQAQPNQRTVQFVLEKAI------NKMSK-KDEYITVYGS----GR 53
Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
TD GV AL QV F + + + + + P V+ V FH ++ +R
Sbjct: 54 TDSGVHALGQVVHF-DFPHPISAKGMLRGLNSMLPLDCEVVDCKIVPNDFHSRYTTHGKR 112
Query: 252 YLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQK 311
YLY GEF + + L Y + K+ +
Sbjct: 113 YLY------------RVSRGEFVNPFKR-----------LYTGHYKYPLDIEKIKEAMPD 149
Query: 312 LEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVANRF 371
+EG Y F AS ++ +Y A+ E ++ NDE + E N F
Sbjct: 150 VEGT-HDYSSFV----ASGSQAKSHVRTIYEAKVYEDKV----NDE----IIFEFYGNGF 196
Query: 372 LRRMVRVLVAT 382
L VR++VAT
Sbjct: 197 LYNQVRIMVAT 207
>F5VCV6_9LACO (tr|F5VCV6) tRNA pseudouridine synthase A OS=Lactobacillus
salivarius NIAS840 GN=truA PE=3 SV=1
Length = 256
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 101/251 (40%), Gaps = 48/251 (19%)
Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
FK+ L+Y G +F G+Q QP TVQ V+E + NK + KD + + GS GR
Sbjct: 5 FKVTLAYDGTNFAGFQAQPNQRTVQFVLEKAI------NKMSK-KDEYITVYGS----GR 53
Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
TD GV AL QV F + + + + + P V+ V FH ++ +R
Sbjct: 54 TDSGVHALGQVVHF-DFPHPISAKGMLRGLNSMLPLDCEVVDCKIVPNDFHSRYTTHGKR 112
Query: 252 YLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQK 311
YLY GEF + + L Y + K+ +
Sbjct: 113 YLY------------RVSRGEFVNPFKR-----------LYTGHYKYPLDIEKIKEAMPD 149
Query: 312 LEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVANRF 371
+EG Y F AS ++ +Y A+ E ++ NDE + E N F
Sbjct: 150 VEGT-HDYSSFV----ASGSQAKSHVRTIYEAKVYEDKV----NDE----IIFEFYGNGF 196
Query: 372 LRRMVRVLVAT 382
L VR++VAT
Sbjct: 197 LYNQVRIMVAT 207
>R7FJ93_9CLOT (tr|R7FJ93) tRNA pseudouridine synthase A OS=Clostridium sp.
CAG:470 GN=BN670_00877 PE=4 SV=1
Length = 246
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 98/254 (38%), Gaps = 53/254 (20%)
Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
K+ + Y G F+GWQKQP +Q IE + E E + +GR
Sbjct: 4 IKLTIEYDGKDFNGWQKQPTKLNIQGTIEQAIKIVTGE-------------EVDLMASGR 50
Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
TD GV A QV +F T ++ I A+ +R+IS EV FH + K +
Sbjct: 51 TDAGVHAFGQVANFKT-NSNIPIEKIPIALNSNLKKSIRIISAEEVDERFHSRLTCKRKT 109
Query: 252 YLYIFPLTDGGYKDQSSGSGEFFDTL-RNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQ 310
Y Y+ + EF + RN E H D + K+ + +
Sbjct: 110 YRYVI------------NNSEFSSAIYRNLETHIPQKLD------------IEKMKQAAK 145
Query: 311 KLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVANR 370
EG+ +K F KAS + +Y A E +P + IEL N
Sbjct: 146 YFEGE-HDFKAF----KASGTSSKSSVRIIYKAVVYE--MP-------NNRIYIELTGNG 191
Query: 371 FLRRMVRVLVATSI 384
FL MVR++ T +
Sbjct: 192 FLYNMVRIIAGTLV 205
>D9SRS8_CLOC7 (tr|D9SRS8) tRNA pseudouridine synthase A OS=Clostridium
cellulovorans (strain ATCC 35296 / DSM 3052 / OCM 3 /
743B) GN=truA PE=3 SV=1
Length = 245
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 66/124 (53%), Gaps = 15/124 (12%)
Query: 132 FKIVLSYHGGSFDGWQKQPGLN-TVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAG 190
+K+ + Y G ++ GWQK + T+QS +E L T VDE E +V +G
Sbjct: 4 YKLTIQYDGKNYRGWQKLSDSDKTIQSKLEKVLSTLVDE-------------EVNVIGSG 50
Query: 191 RTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWR 250
RTD GV A +Q+ +F+T +KD+K +D+ Y P + V S +V FH ++AK +
Sbjct: 51 RTDAGVHARKQIANFHT-EKDLKWKDVLKHCYTYLPEDIVVKSCDKVDEKFHARYNAKKK 109
Query: 251 RYLY 254
Y Y
Sbjct: 110 IYTY 113
>R6GIX4_9BIFI (tr|R6GIX4) tRNA pseudouridine synthase A OS=Bifidobacterium
bifidum CAG:234 GN=BN549_00040 PE=4 SV=1
Length = 300
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 73/272 (26%), Positives = 104/272 (38%), Gaps = 46/272 (16%)
Query: 130 LTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVA 189
+ +I L+Y GG F GW KQP + TVQ IE L T + D P+ +TVA
Sbjct: 1 MRLRIDLAYDGGGFFGWAKQPTIRTVQGEIERVLHTIT----RVPVDDPAEPLR--LTVA 54
Query: 190 GRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAA---------------PGKLRVISV 234
GRTD GV A QVC D+ + + H + P + + V
Sbjct: 55 GRTDTGVHASHQVCHL-----DIGEETLSRCVGHMSVPPTVALKHRLQRMLPADITIHDV 109
Query: 235 SEVSRAFHPNFSAKWRRYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIH-DSSSKDDLEN 293
+ F FSA R Y+Y D++S E LR +H D+ N
Sbjct: 110 TVAPSGFDARFSALERTYVY-------RVADRAS---EVDPRLRGFVLHLDADLDVAAMN 159
Query: 294 ETKSYMFSVSKVNRLLQKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLA 353
E + + G R+ K + PT + R P A
Sbjct: 160 EAAAMTIGLHDFGSFATPNPG-----GTTIREVKTAYWRRIPTRPLVVDGVGERYRTPAA 214
Query: 354 DNDEETRVMCIELVANRFLRRMVRVLVATSIR 385
++D ++C +VA+ F R MVR LV I+
Sbjct: 215 ESD----LLCFTIVADAFARNMVRSLVGGCIQ 242
>Q4C146_CROWT (tr|Q4C146) tRNA pseudouridine synthase A OS=Crocosphaera watsonii
WH 8501 GN=truA PE=3 SV=1
Length = 285
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 56/123 (45%), Gaps = 14/123 (11%)
Query: 134 IVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTD 193
+V+ Y G F GWQ+QP TVQ IE + Q+ PI G AGRTD
Sbjct: 15 LVIQYQGSRFHGWQRQPNQRTVQEDIETAIA---------QVLGYHTPIHG----AGRTD 61
Query: 194 KGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYL 253
GV A QV F + + P+ D + H P + + V +H FSA WRRY
Sbjct: 62 AGVHAAAQVAHF-DYVSPIPPQRWADILNHRLPEDILIRGSQGVPATWHARFSALWRRYR 120
Query: 254 YIF 256
Y F
Sbjct: 121 YSF 123
>F7YYT8_9THEM (tr|F7YYT8) tRNA pseudouridine synthase A OS=Thermotoga thermarum
DSM 5069 GN=truA PE=3 SV=1
Length = 260
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 105/257 (40%), Gaps = 57/257 (22%)
Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
F V+SY G +F G+Q Q + TVQ VIE L +R + SV AGR
Sbjct: 4 FAAVISYDGNNFFGFQLQKDVRTVQGVIEQAL-------------ERIFKTKISVVCAGR 50
Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
TD GV A+ QV +F D+ P ++++A+ P + V V EV + F+P F A R
Sbjct: 51 TDTGVHAVGQVIAF-DCPYDIPPENMKNALNANLPDDVYVRKVIEVPKDFNPRFCATRRI 109
Query: 252 YLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETK---SYMFSVSKVNRL 308
Y Y I++ + + + Y V+K+
Sbjct: 110 YHYF--------------------------IYNGKTPNVFTRKYYWWFPYELDVNKMREA 143
Query: 309 LQKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVA 368
+ LEG+ +K FA K NE +Y R + R L + I +
Sbjct: 144 AKYLEGE-HDFKAFA---KTEGNEKSTVRT-IYRIRILRLRKNL---------ILIRVEG 189
Query: 369 NRFLRRMVRVLVATSIR 385
FLRRMVR +V ++
Sbjct: 190 RSFLRRMVRNIVGALVK 206
>K7MW02_SOYBN (tr|K7MW02) tRNA pseudouridine synthase OS=Glycine max PE=3 SV=1
Length = 410
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 69/145 (47%), Gaps = 11/145 (7%)
Query: 116 ESVASRGRGGRWARLTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQL 175
E A G R+ R I +Y G + G QK PG T++ +E L +V +Q
Sbjct: 40 ECAAGTGTKKRYKRRKVAIFFAYCGVGYQGMQKNPGAKTIEGDLEEVL--YVSGAVPEQ- 96
Query: 176 KDRGLPIEGSVTVAGRTDKGVTALQQVCS--FYTWKKDVKPRDIEDAIYHAAPGKLRVIS 233
DRG+P + RTDKGV+A+ QV S FY + P + D + P ++R+
Sbjct: 97 -DRGVPKRYDWARSARTDKGVSAVGQVVSGRFY-----IDPPGLVDRLNSNLPSQIRIFG 150
Query: 234 VSEVSRAFHPNFSAKWRRYLYIFPL 258
V+ +F+ RRY+Y+ P+
Sbjct: 151 YKRVTASFNAKKFCDRRRYVYLIPV 175
>H1DC39_9FUSO (tr|H1DC39) tRNA pseudouridine synthase OS=Fusobacterium
necrophorum subsp. funduliforme 1_1_36S
GN=HMPREF9466_03022 PE=3 SV=1
Length = 132
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 61/123 (49%), Gaps = 14/123 (11%)
Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
KI Y G SF G+Q+QP TVQ IE L + E + +T +GR
Sbjct: 4 IKISYQYDGSSFMGFQRQPNQRTVQGEIEKSLFHILRE-------------KIDLTSSGR 50
Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
TD+GV A+QQV +F+T ++ + A+ P + ++ V EV FH FSAK R
Sbjct: 51 TDRGVHAIQQVSNFFT-AVNIPSDRLFYALSRNLPEDILLLQVEEVDSEFHARFSAKTRS 109
Query: 252 YLY 254
Y Y
Sbjct: 110 YRY 112
>A8UHK6_9FLAO (tr|A8UHK6) tRNA pseudouridine synthase A OS=Flavobacteriales
bacterium ALC-1 GN=truA PE=3 SV=1
Length = 252
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 72/255 (28%), Positives = 106/255 (41%), Gaps = 54/255 (21%)
Query: 130 LTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVA 189
+ F I LSY+G + GWQ QP +VQ V+E L T L E SV A
Sbjct: 1 MRFFIELSYNGKEYHGWQNQPNAISVQEVLEKALSTI-------------LKAEVSVMGA 47
Query: 190 GRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKW 249
GRTD GV A Q F ++K+ + +D+ + P + V ++ EV H F AK
Sbjct: 48 GRTDAGVHASQMFAHF-DFEKEFEYKDVVYKLNSYLPKDIAVSTIFEVKPDAHARFEAKS 106
Query: 250 RRYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLL 309
R Y Y + S S FD +D + + L + ++ M + K+
Sbjct: 107 RTYHY-----------KISTSKNVFD-------YDFAYQVQLPLDVEA-MNTACKI---- 143
Query: 310 QKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVAN 369
L YK F +K++ T+ Y+ EA N + + A+
Sbjct: 144 ------LFEYKDFQCFSKSN------TDVKTYNCDIKEAFWTQNSNQ-----LIFTITAD 186
Query: 370 RFLRRMVRVLVATSI 384
RFLR MVR +V T +
Sbjct: 187 RFLRNMVRAIVGTMV 201
>R7AUT6_9FIRM (tr|R7AUT6) tRNA pseudouridine synthase A 1 OS=Firmicutes bacterium
CAG:534 GN=BN699_02191 PE=4 SV=1
Length = 256
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 64/123 (52%), Gaps = 13/123 (10%)
Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
FK++L Y G + GWQ+Q + ++ I+G L + + Q ++ +G +GR
Sbjct: 4 FKLILQYEGTRYQGWQRQ---ESTENTIQGKLEALLTKMTAQPVELQG---------SGR 51
Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
TD GV A QV +F+ K + P +I + + P + V+SV+EV FH +AK +
Sbjct: 52 TDSGVHAFAQVANFHADTK-MTPEEILEYMNRYLPEDIGVLSVTEVPERFHSRLNAKGKT 110
Query: 252 YLY 254
Y Y
Sbjct: 111 YCY 113
>A3SYP3_9RHOB (tr|A3SYP3) tRNA pseudouridine synthase A OS=Sulfitobacter sp.
NAS-14.1 GN=truA PE=3 SV=1
Length = 262
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 59/124 (47%), Gaps = 15/124 (12%)
Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
+ + + YHG F GWQ+Q L +VQ IE L P ++ AGR
Sbjct: 4 YALKIEYHGAPFVGWQRQIDLASVQGAIEDALAKIE-------------PRAHNIAAAGR 50
Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAI-YHAAPGKLRVISVSEVSRAFHPNFSAKWR 250
TD GV AL QV + ++D P + +AI YH P + ++ V FH FSA R
Sbjct: 51 TDAGVHALAQV-AHCDMERDWTPFRLSEAINYHLKPLPIAIVDCVAVDDDFHARFSALER 109
Query: 251 RYLY 254
RYL+
Sbjct: 110 RYLF 113
>A3SF68_9RHOB (tr|A3SF68) tRNA pseudouridine synthase A OS=Sulfitobacter sp.
EE-36 GN=truA PE=3 SV=1
Length = 262
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 59/124 (47%), Gaps = 15/124 (12%)
Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
+ + + YHG F GWQ+Q L +VQ IE L P ++ AGR
Sbjct: 4 YALKIEYHGAPFVGWQRQIDLASVQGAIEDALAKIE-------------PRAHNIAAAGR 50
Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAI-YHAAPGKLRVISVSEVSRAFHPNFSAKWR 250
TD GV AL QV + ++D P + +AI YH P + ++ V FH FSA R
Sbjct: 51 TDAGVHALAQV-AHCDMERDWTPFRLSEAINYHLKPLPIAIVDCVAVDDDFHARFSALER 109
Query: 251 RYLY 254
RYL+
Sbjct: 110 RYLF 113
>A0LIV1_SYNFM (tr|A0LIV1) tRNA pseudouridine synthase A OS=Syntrophobacter
fumaroxidans (strain DSM 10017 / MPOB) GN=truA PE=3 SV=1
Length = 261
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 61/126 (48%), Gaps = 14/126 (11%)
Query: 129 RLTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTV 188
R FK++L Y G + GWQ+Q G+ T+Q V+E L + P+ V
Sbjct: 9 RKNFKLILEYDGSHYHGWQRQLGVLTIQEVLESRLEVMLQS-----------PV--GVRA 55
Query: 189 AGRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAK 248
+GRTD GV A QV +F+ + ++P +I I P + V+ + +FH FSA
Sbjct: 56 SGRTDAGVHACGQVVNFHVHTR-LRPEEILRGINSLLPPDIVVLHAEVAAESFHARFSAT 114
Query: 249 WRRYLY 254
+ Y Y
Sbjct: 115 GKTYEY 120
>E4VBQ6_BIFBI (tr|E4VBQ6) tRNA pseudouridine synthase A OS=Bifidobacterium
bifidum NCIMB 41171 GN=truA PE=3 SV=1
Length = 304
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 73/272 (26%), Positives = 104/272 (38%), Gaps = 46/272 (16%)
Query: 130 LTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVA 189
+ +I L+Y GG F GW KQP + TVQ IE L T + D P+ +TVA
Sbjct: 5 MRLRIDLAYDGGGFFGWAKQPTIRTVQGEIERVLHTI----TRVPVDDPAEPLR--LTVA 58
Query: 190 GRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAA---------------PGKLRVISV 234
GRTD GV A QVC D+ + + H + P + + V
Sbjct: 59 GRTDTGVHASHQVCHL-----DIGEETLSRCVGHMSVPPTVALKHRLQRMLPADITIHDV 113
Query: 235 SEVSRAFHPNFSAKWRRYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIH-DSSSKDDLEN 293
+ F FSA R Y+Y D++S E LR +H D+ N
Sbjct: 114 TVAPSGFDARFSALERTYVY-------RVADRAS---EVDPRLRGFVLHLDADLDVAAMN 163
Query: 294 ETKSYMFSVSKVNRLLQKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLA 353
E + + G R+ K + PT + R P A
Sbjct: 164 EAAAMTIGLHDFGSFATPNPG-----GTTIREVKTAYWRRIPTRPLVVDGVGERYRTPAA 218
Query: 354 DNDEETRVMCIELVANRFLRRMVRVLVATSIR 385
++D ++C +VA+ F R MVR LV I+
Sbjct: 219 ESD----LLCFTIVADAFARNMVRSLVGGCIQ 246
>E1NE17_9BIFI (tr|E1NE17) tRNA pseudouridine synthase A OS=Bifidobacterium
dentium JCVIHMP022 GN=truA PE=3 SV=1
Length = 302
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 79/274 (28%), Positives = 111/274 (40%), Gaps = 58/274 (21%)
Query: 130 LTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVA 189
+ +I L+Y GG F GW KQP TVQ IE L T + + D G P+ +TVA
Sbjct: 1 MRLRIDLAYDGGGFFGWAKQPDRRTVQGEIERILHTVL----RVPVDDAGEPLR--LTVA 54
Query: 190 GRTDKGVTALQQVCSF---------YTWKKDVKP-RDIEDAIYHAAPGKLRVISVSEVSR 239
GRTD GV A QVC DV P + + P + + ++E +
Sbjct: 55 GRTDTGVHASHQVCHLDVSETILARCVGHMDVPPVVALTRRLQRMLPNDITIHGINEAPQ 114
Query: 240 AFHPNFSAKWRRYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYM 299
F FSA R Y+Y D+SS E +R +H DDL+ ET +
Sbjct: 115 GFDARFSALERTYVYRI-------ADRSS---EIDPRMRGFVLH---VDDDLDLETMN-- 159
Query: 300 FSVSKVNRLLQKLEGKLLSYKMFARDTKASRNEGPPT--ECFLYHARAIEARLPLADND- 356
+ ++ + + A+ N G T E + R I R PL D +
Sbjct: 160 -------------QAAAMTIGLHDFGSFATPNPGGTTIREVKTAYWRRIPQR-PLIDGEM 205
Query: 357 ----------EETRVMCIELVANRFLRRMVRVLV 380
E+ + C +VA+ F R MVR LV
Sbjct: 206 TMGERYHTPSMESGLACFTIVADAFARNMVRSLV 239
>Q2II39_ANADE (tr|Q2II39) tRNA pseudouridine synthase A OS=Anaeromyxobacter
dehalogenans (strain 2CP-C) GN=truA PE=3 SV=1
Length = 272
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 64/127 (50%), Gaps = 15/127 (11%)
Query: 129 RLTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTV 188
R ++ + L+Y GG F G+Q+QPGL TVQ +E + L+ G + + V
Sbjct: 3 RRSYALRLAYDGGRFRGFQRQPGLPTVQQALE------------EALERLG--VRAQLHV 48
Query: 189 AGRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAK 248
A RTD GV AL QV SF + + + P + + P + V+ + V +FH SA
Sbjct: 49 AARTDAGVHALAQVVSF-SARAALDPAALRRGLNEGLPEGILVLDAARVGPSFHARGSAA 107
Query: 249 WRRYLYI 255
R Y+Y+
Sbjct: 108 SRTYVYL 114
>F7ZCI6_ROSLO (tr|F7ZCI6) tRNA pseudouridine synthase A OS=Roseobacter litoralis
(strain ATCC 49566 / DSM 6996 / JCM 21268 / NBRC 15278 /
OCh 149) GN=truA PE=3 SV=1
Length = 275
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 61/126 (48%), Gaps = 19/126 (15%)
Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
+ + + YHG F GWQ+Q +TVQ IE LG P ++ AGR
Sbjct: 23 YALKVEYHGAPFVGWQRQKEHSTVQGAIEQALGKIA-------------PAPHTIAAAGR 69
Query: 192 TDKGVTALQQV--CSFYTWKKDVKPRDIEDAI-YHAAPGKLRVISVSEVSRAFHPNFSAK 248
TD GV A+ QV C +D P + +A+ YH P + + + + V +H FSA+
Sbjct: 70 TDAGVHAIAQVAHCDLV---RDWDPFRLSEALNYHLKPAPIAITACTVVDADWHARFSAR 126
Query: 249 WRRYLY 254
R+YL+
Sbjct: 127 QRQYLF 132
>R0EPF5_PEDAC (tr|R0EPF5) tRNA pseudouridine(38-40) synthase, truA OS=Pediococcus
acidilactici D3 GN=truA PE=4 SV=1
Length = 248
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 105/258 (40%), Gaps = 53/258 (20%)
Query: 130 LTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVA 189
+ +KI ++Y G +F G+Q QP TV+ V++ + NK + +PI GS
Sbjct: 1 MRYKITMAYDGTNFAGFQAQPNQRTVEGVLKRAV------NKIAKNPQPEIPIFGS---- 50
Query: 190 GRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKW 249
GRTD GV A QV F ++ ++ A+ P +V V V FH F+
Sbjct: 51 GRTDAGVHAFGQVVHF-DLPIEMTANNMLHALNSILPLDTQVKKVEIVDEDFHARFTTHG 109
Query: 250 RRYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMF--SVSKVNR 307
+RY Y L GEF D + N T + F S+ + +
Sbjct: 110 KRYQYRMAL------------GEFVDPFK-------------RNYTGHWKFPISIELIQQ 144
Query: 308 LLQKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAI-EARLPLADNDEETRVMCIEL 366
++ LEG + F ++N H R I EA+ A DE + E
Sbjct: 145 AIKDLEGT-HDFSSFVASGSTAKN----------HVRTIYEAK---AWKDEAQNEIIFEF 190
Query: 367 VANRFLRRMVRVLVATSI 384
N FL MVR++VA +
Sbjct: 191 YGNGFLYNMVRIMVAVLV 208
>G6IRS9_PEDAC (tr|G6IRS9) tRNA pseudouridine synthase A OS=Pediococcus
acidilactici MA18/5M GN=truA PE=3 SV=1
Length = 248
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 105/258 (40%), Gaps = 53/258 (20%)
Query: 130 LTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVA 189
+ +KI ++Y G +F G+Q QP TV+ V++ + NK + +PI GS
Sbjct: 1 MRYKITMAYDGTNFAGFQAQPNQRTVEGVLKRAV------NKIAKNPQPEIPIFGS---- 50
Query: 190 GRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKW 249
GRTD GV A QV F ++ ++ A+ P +V V V FH F+
Sbjct: 51 GRTDAGVHAFGQVVHF-DLPIEMTANNMLHALNSILPLDTQVKKVEIVDEDFHARFTTHG 109
Query: 250 RRYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMF--SVSKVNR 307
+RY Y L GEF D + N T + F S+ + +
Sbjct: 110 KRYQYRMAL------------GEFVDPFK-------------RNYTGHWKFPISIELIQQ 144
Query: 308 LLQKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAI-EARLPLADNDEETRVMCIEL 366
++ LEG + F ++N H R I EA+ A DE + E
Sbjct: 145 AIKDLEGT-HDFSSFVASGSTAKN----------HVRTIYEAK---AWKDEAQNEIIFEF 190
Query: 367 VANRFLRRMVRVLVATSI 384
N FL MVR++VA +
Sbjct: 191 YGNGFLYNMVRIMVAVLV 208
>E0NFB7_PEDAC (tr|E0NFB7) tRNA pseudouridine synthase A OS=Pediococcus
acidilactici DSM 20284 GN=truA PE=3 SV=1
Length = 248
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 105/258 (40%), Gaps = 53/258 (20%)
Query: 130 LTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVA 189
+ +KI ++Y G +F G+Q QP TV+ V++ + NK + +PI GS
Sbjct: 1 MRYKITMAYDGTNFAGFQAQPNQRTVEGVLKRAV------NKIAKNPQPEIPIFGS---- 50
Query: 190 GRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKW 249
GRTD GV A QV F ++ ++ A+ P +V V V FH F+
Sbjct: 51 GRTDAGVHAFGQVVHF-DLPIEMTANNMLHALNSILPLDTQVKKVEIVDEDFHARFTTHG 109
Query: 250 RRYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMF--SVSKVNR 307
+RY Y L GEF D + N T + F S+ + +
Sbjct: 110 KRYQYRMAL------------GEFVDPFK-------------RNYTGHWKFPISIELIQQ 144
Query: 308 LLQKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAI-EARLPLADNDEETRVMCIEL 366
++ LEG + F ++N H R I EA+ A DE + E
Sbjct: 145 AIKDLEGT-HDFSSFVASGSTAKN----------HVRTIYEAK---AWKDEAQNEIIFEF 190
Query: 367 VANRFLRRMVRVLVATSI 384
N FL MVR++VA +
Sbjct: 191 YGNGFLYNMVRIMVAVLV 208
>D2EKH4_PEDAC (tr|D2EKH4) tRNA pseudouridine synthase A OS=Pediococcus
acidilactici 7_4 GN=truA PE=3 SV=1
Length = 248
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 105/258 (40%), Gaps = 53/258 (20%)
Query: 130 LTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVA 189
+ +KI ++Y G +F G+Q QP TV+ V++ + NK + +PI GS
Sbjct: 1 MRYKITMAYDGTNFAGFQAQPNQRTVEGVLKRAV------NKIAKNPQPEIPIFGS---- 50
Query: 190 GRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKW 249
GRTD GV A QV F ++ ++ A+ P +V V V FH F+
Sbjct: 51 GRTDAGVHAFGQVVHF-DLPIEMTANNMLHALNSILPLDTQVKKVEIVDEDFHARFTTHG 109
Query: 250 RRYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMF--SVSKVNR 307
+RY Y L GEF D + N T + F S+ + +
Sbjct: 110 KRYQYRMAL------------GEFVDPFK-------------RNYTGHWKFPISIELIQQ 144
Query: 308 LLQKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAI-EARLPLADNDEETRVMCIEL 366
++ LEG + F ++N H R I EA+ A DE + E
Sbjct: 145 AIKDLEGT-HDFSSFVASGSTAKN----------HVRTIYEAK---AWKDEAQNEIIFEF 190
Query: 367 VANRFLRRMVRVLVATSI 384
N FL MVR++VA +
Sbjct: 191 YGNGFLYNMVRIMVAVLV 208
>F5YEX5_TREAZ (tr|F5YEX5) tRNA pseudouridine synthase A OS=Treponema
azotonutricium (strain ATCC BAA-888 / DSM 13862 / ZAS-9)
GN=truA PE=3 SV=1
Length = 248
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 61/126 (48%), Gaps = 14/126 (11%)
Query: 133 KIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRT 192
K++++Y G F GWQ+Q G TVQ IE LG E+ ++T +GRT
Sbjct: 6 KLLIAYDGTDFSGWQRQAGRRTVQGEIEKSLGKVHKESV-------------NLTGSGRT 52
Query: 193 DKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRY 252
D GV A QV +F T ++ R A+ P +R++ +E FH + AK R Y
Sbjct: 53 DAGVHAAGQVANFLTTIDSMEARRFVPALNRILPEDVRILEAAEAGEDFHSRYDAKSRTY 112
Query: 253 LY-IFP 257
Y I P
Sbjct: 113 RYNIIP 118
>I7L197_METBM (tr|I7L197) tRNA pseudouridine synthase A OS=Methanoculleus
bourgensis (strain ATCC 43281 / DSM 3045 / OCM 15 / MS2)
GN=truA PE=3 SV=1
Length = 268
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 71/171 (41%), Gaps = 13/171 (7%)
Query: 130 LTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVA 189
+ I SY G F G Q QPGL TV+ G F+ + L + E A
Sbjct: 1 MKLAIRFSYFGDRFFGSQMQPGLRTVE-------GEFIAACRRLGLFEDWR--EAGFVTA 51
Query: 190 GRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKW 249
GRTD+GV A QVCSF+T K D R + + P + + + V FHP +SA
Sbjct: 52 GRTDRGVHARCQVCSFFTEKPDRAIRSLNRVL----PEDIWCTAWAGVPDRFHPRYSAMS 107
Query: 250 RRYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMF 300
R Y Y F G +GEF + + +D N + +F
Sbjct: 108 RTYRYFFFPVPGNVALMHEAAGEFVGRHDFSAFARAGGRDPERNVLSARVF 158
>D0MFA8_RHOM4 (tr|D0MFA8) tRNA pseudouridine synthase A OS=Rhodothermus marinus
(strain ATCC 43812 / DSM 4252 / R-10) GN=truA PE=3 SV=1
Length = 252
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 100/257 (38%), Gaps = 58/257 (22%)
Query: 131 TFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAG 190
T+++++ Y G F GWQ Q ++Q+ +E L + E GS G
Sbjct: 3 TYRLLIEYDGTDFSGWQIQRNGPSIQAALEEALAVVLRERVRVV---------GS----G 49
Query: 191 RTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWR 250
RTD GV A QV F T + V P ++ ++ P + + SVS FH + A+WR
Sbjct: 50 RTDAGVHARGQVAHFRT-DRPVDPERLQGSLNGLLPPSIAIRSVSLAPDDFHARYDARWR 108
Query: 251 RYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSV---SKVNR 307
RY Y ++ LE + Y+ ++NR
Sbjct: 109 RYHYYV----------------------------ATVPCALERHLRWYLRPAPDFERMNR 140
Query: 308 LLQKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELV 367
L G + F R A+RN C +Y AR + D E+V
Sbjct: 141 AACDLLGT-HDFTTFCRTQTATRNR----TCTVYLARWVP--------DPRPGDWHFEIV 187
Query: 368 ANRFLRRMVRVLVATSI 384
A+RFL MVR +V T I
Sbjct: 188 ADRFLHGMVRAIVGTLI 204
>G8NZ09_GRAMM (tr|G8NZ09) tRNA pseudouridine synthase A OS=Granulicella mallensis
(strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8) GN=truA
PE=3 SV=1
Length = 271
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 61/123 (49%), Gaps = 14/123 (11%)
Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
+K+ LSY G F GWQ QP L TVQ + L E+ Q GS GR
Sbjct: 4 WKLTLSYDGTLFHGWQVQPELPTVQGSLALALKYVTGESVLPQ---------GS----GR 50
Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
TD GV AL QV SF + + P +++ A+ A P +R+++ V +FH SA+ +
Sbjct: 51 TDSGVHALAQVTSF-ALETSIPPANLQRALNRALPPSIRILTAELVDESFHARHSARRKT 109
Query: 252 YLY 254
Y Y
Sbjct: 110 YEY 112
>R6WGM6_9FIRM (tr|R6WGM6) tRNA pseudouridine synthase A OS=Phascolarctobacterium
succinatutens CAG:287 GN=BN587_01928 PE=4 SV=1
Length = 250
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 64/125 (51%), Gaps = 16/125 (12%)
Query: 131 TFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTV-A 189
T K+V++Y G ++ G+QKQ + TVQ+V+E L E P+ VT +
Sbjct: 3 TIKLVVAYDGSAYHGFQKQKNVQTVQNVLEEALTMLCGE-----------PV---VTAGS 48
Query: 190 GRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKW 249
GRTD GV AL Q +F T + ++ A P + V+S E++ FH FSA+W
Sbjct: 49 GRTDAGVHALAQTVTFTT-NGRIPCANLVRAAASLLPEDIVVVSAEEMTEGFHARFSAQW 107
Query: 250 RRYLY 254
+ Y Y
Sbjct: 108 KTYHY 112
>H1Q0M8_9BACT (tr|H1Q0M8) tRNA pseudouridine synthase A OS=Prevotella micans
F0438 GN=truA PE=3 SV=1
Length = 249
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 73/256 (28%), Positives = 99/256 (38%), Gaps = 53/256 (20%)
Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
+ I LSY G + GWQ QP +VQ V+E L T + N S+T AGR
Sbjct: 4 YIIKLSYDGTRYHGWQIQPNGISVQEVLENALTTIMRTNT-------------SITGAGR 50
Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
TD GV A V F + D+ + P + V +V +V FH FSAK R
Sbjct: 51 TDAGVHARMMVAHF-DLGNSIDEHDLVYKLNRFLPNDISVSAVEQVDNDFHARFSAKSRT 109
Query: 252 YLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQK 311
Y Y ++ S LR Y K+N +
Sbjct: 110 YHYYLHTEKDAFQRHYSCE------LR-------------------YKLDFEKMNDAAKL 144
Query: 312 LEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEA---RLPLADNDEETRVMCIELVA 368
L G+ +K F + S+ T C IEA +LP + +R + A
Sbjct: 145 LLGQ-KDFKCFCKTGADSK----TTIC-----NVIEAAWHQLPADECTLASRWF-FRITA 193
Query: 369 NRFLRRMVRVLVATSI 384
+RFLR MVR +V T I
Sbjct: 194 DRFLRNMVRAVVGTLI 209
>C7XVU2_9LACO (tr|C7XVU2) tRNA pseudouridine synthase A OS=Lactobacillus
coleohominis 101-4-CHN GN=truA PE=3 SV=1
Length = 253
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 73/253 (28%), Positives = 104/253 (41%), Gaps = 49/253 (19%)
Query: 130 LTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVA 189
+ +KI +Y G +F G+Q QP T IE L T V N+ + D + I GS
Sbjct: 2 IRYKITFAYDGTNFSGFQIQPHKRT----IEQTLKTIV--NRMAKNPDPAISIIGS---- 51
Query: 190 GRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKW 249
GRTD GV AL QV F + + + + A+ P + V VS FH ++A
Sbjct: 52 GRTDAGVHALNQVAHF-DFPYHIPEQSMVRALNSQLPLDIIVKKAEIVSNEFHARYNAHR 110
Query: 250 RRYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLL 309
+RY Y GEF D + N + + K Y ++ +NR
Sbjct: 111 KRYRY------------RVTQGEFVDPFKRN--YTAHFK---------YPVDIAHMNRAA 147
Query: 310 QKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAI-EARLPLADNDEETRVMCIELVA 368
Q L G A ++A N R I EA++ D+D E + E V
Sbjct: 148 QDLVGTHDFTSFVASGSQAKSN-----------IRTIYEAKVYYEDHDHE---VIFEFVG 193
Query: 369 NRFLRRMVRVLVA 381
N FL VR++VA
Sbjct: 194 NGFLYNQVRIMVA 206
>D3EQH7_UCYNA (tr|D3EQH7) tRNA pseudouridine synthase A OS=cyanobacterium UCYN-A
GN=truA PE=3 SV=1
Length = 281
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 103/260 (39%), Gaps = 69/260 (26%)
Query: 134 IVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTD 193
+++ Y G F GWQ+QP TVQ+ IE + + L + S+ AGRTD
Sbjct: 16 LIIQYSGNRFHGWQRQPYRRTVQADIENTI-------------TKSLGYKVSIHGAGRTD 62
Query: 194 KGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYL 253
GV A QV F + + P+ + + P + + + EVS +H FSA+WRRY
Sbjct: 63 AGVHATGQVAHF-DYAGPIPPKSLARVLNRYLPEDILIRNSKEVSINWHARFSAQWRRYR 121
Query: 254 YIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVS----KVNRLL 309
Y TL N +D KSY + KV +L
Sbjct: 122 Y---------------------TLYTN--------NDCNLLIKSYSWHYYRYPLKVKSML 152
Query: 310 QKLEGKLLSYKMFARDTKAS-RN----EGPPTECFLYHARAIEARLPLADNDEETRVMCI 364
L+ L ++ + A K S RN E EC+ + + I
Sbjct: 153 DALKSLLGTHHLTAFRKKGSQRNHSWVEIQDVECY-----------------RKGAFIHI 195
Query: 365 ELVANRFLRRMVRVLVATSI 384
E+ AN FL MVR+L+ +
Sbjct: 196 EIQANGFLYGMVRLLMGMLV 215
>B4UEH8_ANASK (tr|B4UEH8) tRNA pseudouridine synthase A OS=Anaeromyxobacter sp.
(strain K) GN=truA PE=3 SV=1
Length = 272
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 15/127 (11%)
Query: 129 RLTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTV 188
R ++ + L+Y GG F G+Q+QPGL TVQ +E + L+ GL + V
Sbjct: 3 RRSYALRLAYDGGRFRGFQRQPGLPTVQQALE------------EALERLGL--RAQLHV 48
Query: 189 AGRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAK 248
A RTD GV AL QV SF + + + P + + P + V+ + V +FH SA
Sbjct: 49 AARTDAGVHALAQVVSF-SARAALDPAALRRGLNEGLPEGILVLDAARVGPSFHARGSAI 107
Query: 249 WRRYLYI 255
R Y+Y+
Sbjct: 108 ARTYVYL 114
>G8M2D7_CLOCD (tr|G8M2D7) tRNA pseudouridine synthase A OS=Clostridium
clariflavum (strain DSM 19732 / NBRC 101661 / EBR45)
GN=truA PE=3 SV=1
Length = 244
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 102/252 (40%), Gaps = 52/252 (20%)
Query: 133 KIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRT 192
K+ + Y G ++ GWQ Q TVQ IE + E + I GS RT
Sbjct: 5 KLTIEYDGTNYHGWQAQSNAKTVQGTIEKAIHGLTGEK---------IAITGS----SRT 51
Query: 193 DKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRY 252
D+GV A QV +F+T ++ P A+ P + + EVS FH + +K ++Y
Sbjct: 52 DQGVHAYGQVANFFT-NSNIPPERFSYALNRMLPDDIVIKKSEEVSMDFHARYCSKGKKY 110
Query: 253 LYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQKL 312
Y+ + F + N + S + DLE K+NR ++
Sbjct: 111 RYLIY------------NNSFPSAIYRNRAYHISHRLDLE-----------KMNRAIEFF 147
Query: 313 EGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVANRFL 372
+G D A R G ++ ++ ++ +E ++C E+ + FL
Sbjct: 148 KG--------THDFSAFRATGSSSKT------SVRTIFDVSLTSKED-LICFEVSGDGFL 192
Query: 373 RRMVRVLVATSI 384
MVR++V T +
Sbjct: 193 YNMVRIMVGTIV 204
>R6MZR5_9CLOT (tr|R6MZR5) tRNA pseudouridine synthase A OS=Clostridium sp.
CAG:302 GN=BN595_00217 PE=4 SV=1
Length = 246
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 69/255 (27%), Positives = 106/255 (41%), Gaps = 49/255 (19%)
Query: 130 LTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVA 189
+ + I +SY G F G+QKQP TVQS +E L K V +
Sbjct: 1 MRYLITISYDGTDFSGYQKQPKERTVQSELEKALKEINGGKKV------------DVHAS 48
Query: 190 GRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKW 249
GRTD GV AL Q F K + P + + P + V V EV FH FSA
Sbjct: 49 GRTDAGVHALNQKVHFDLETK-ITPDKLIRGLNSLLPNDIYVKDVKEVPEDFHARFSAIG 107
Query: 250 RRYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLL 309
+ Y+Y + GE ++ L N ++ + K D V ++ R +
Sbjct: 108 KEYIYKLNM------------GE-YNPLERNYVYQHNKKLD-----------VIEMERAM 143
Query: 310 QKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVAN 369
+ LEG+ ++K F + T +++ + R I + D+ + ++ + V
Sbjct: 144 KYLEGE-HNFKSFTK-TDEEKDD---------YVRTISQTNIIRDSKDINKI-TLSFVGT 191
Query: 370 RFLRRMVRVLVATSI 384
FLR MVR +V T I
Sbjct: 192 GFLRYMVRNIVGTLI 206
>R7HLS1_9FIRM (tr|R7HLS1) tRNA pseudouridine synthase A OS=Firmicutes bacterium
CAG:321 GN=BN608_00443 PE=4 SV=1
Length = 246
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 105/255 (41%), Gaps = 49/255 (19%)
Query: 130 LTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVA 189
+ + I +SY G F G+QKQP + TVQ IE L K + +
Sbjct: 1 MRYLITVSYDGTEFSGYQKQPKMRTVQGEIEKALKEISGGKKI------------DIHAS 48
Query: 190 GRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKW 249
GRTD GV A+ Q F ++ + + P + V V EVS FH FSA
Sbjct: 49 GRTDAGVHAMAQKIHF-DLDMNITLEKLAKGLNSLLPKDIFVRKVEEVSSDFHARFSAIG 107
Query: 250 RRYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLL 309
+ Y+YI + GE ++ L N ++ ++K D V ++ R +
Sbjct: 108 KEYIYILNM------------GE-YNPLERNYVYQHNNKLD-----------VVEMERAM 143
Query: 310 QKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVAN 369
+ EG ++K F + T +++ + R I + D + ++ + V
Sbjct: 144 KYFEGT-HNFKSFTK-TDEEKDD---------YVRTISQTNLIRDTKDINKITLV-FVGT 191
Query: 370 RFLRRMVRVLVATSI 384
FLR MVR +V T I
Sbjct: 192 GFLRYMVRNMVGTLI 206
>K0P6D5_9BACT (tr|K0P6D5) tRNA pseudouridine synthase A OS=Cardinium endosymbiont
cEper1 of Encarsia pergandiella GN=truA PE=3 SV=1
Length = 253
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 67/142 (47%), Gaps = 21/142 (14%)
Query: 130 LTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVA 189
+ + I +SY G ++ GWQ Q +VQ V+E LG +L + I GS
Sbjct: 1 MRYFIYISYFGKAYSGWQIQKNGPSVQQVVETALG---------KLLSTTIAISGS---- 47
Query: 190 GRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIY---HAAPGKLRVISVSEVSRAFHPNFS 246
RTDKGV ALQQV F + P D+ D Y P + + ++ V+ H F
Sbjct: 48 SRTDKGVHALQQVAHF----DHIPPIDLADLTYRLNRVLPSDISITAIRPVASDAHARFD 103
Query: 247 AKWRRYLY-IFPLTDGGYKDQS 267
A +RRY Y I D Y++QS
Sbjct: 104 ACYRRYAYTIVTQKDPFYREQS 125
>D1A345_THECD (tr|D1A345) tRNA pseudouridine synthase A OS=Thermomonospora
curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 /
NCIMB 10081) GN=truA PE=3 SV=1
Length = 288
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 84/207 (40%), Gaps = 41/207 (19%)
Query: 128 ARLTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVT 187
A + ++ + Y G F GW +QP TVQ VIE LG + + L T
Sbjct: 5 ALVRLRLDIGYDGTDFSGWARQPDRRTVQGVIEEALGRVLRLDPPPAL-----------T 53
Query: 188 VAGRTDKGVTALQQVCSFYTWKKDVKPR---DIEDAIYHAAPGKL----RVISVSEVSRA 240
VAGRTD GV A QV DV R + + + H G L RV ++ R
Sbjct: 54 VAGRTDAGVHARGQVAHV-----DVPERAYAAVSNRLVHRLAGLLPPDVRVWRIAVAPRG 108
Query: 241 FHPNFSAKWRRYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEI--HDSSSKDDLENETKSY 298
F FSA WRRY+Y D+ +G D LR E+ H D NE +
Sbjct: 109 FDARFSALWRRYVYRV-------CDREAG----VDPLRRREVLWHPRPLDLDRMNEAAAR 157
Query: 299 MFSVSKVNRLLQKLEG-----KLLSYK 320
+ ++ EG +LL Y+
Sbjct: 158 LLGEHDFAAFCRRREGATTIRRLLRYE 184
>G9ZMT9_9LACO (tr|G9ZMT9) tRNA pseudouridine synthase A OS=Lactobacillus
parafarraginis F0439 GN=truA PE=3 SV=1
Length = 268
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 70/261 (26%), Positives = 102/261 (39%), Gaps = 48/261 (18%)
Query: 130 LTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVA 189
+ +KI Y G +F+G+Q+QPG TV+ V+ + K PI V +
Sbjct: 6 IRYKITFIYDGTNFNGFQRQPGQRTVEGVLTQKVNVMA--------KHPTPPI--VVYGS 55
Query: 190 GRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKW 249
GRTD GV AL QV F + D+ I + P + V V +VS FH +
Sbjct: 56 GRTDSGVHALAQVAHF-DFPFDLPTTAIYRGLNSMLPLDMEVTKVEKVSDHFHARYDVSG 114
Query: 250 RRYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLL 309
++YLY L GEF + + N D++ KVN L
Sbjct: 115 KKYLYRLAL------------GEFQNPFKRNYTGHWKYPIDMQ-----------KVNHAL 151
Query: 310 QKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVAN 369
+ L G+ A + A N R I + A+ D + IE N
Sbjct: 152 KDLVGEHDFSSFVASGSTAHTN-----------VRVIYSA--TANYDPAANEVSIEFYGN 198
Query: 370 RFLRRMVRVLVATSIREAAAG 390
FL MVR++V + E +G
Sbjct: 199 GFLYNMVRIMVGVVV-EIGSG 218
>B6Y6M7_9RICK (tr|B6Y6M7) tRNA pseudouridine synthase A OS=Wolbachia endosymbiont
of Culex quinquefasciatus JHB GN=truA PE=3 SV=1
Length = 245
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 60/127 (47%), Gaps = 16/127 (12%)
Query: 130 LTFKIVLSYHGGSFDGWQKQP-GLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTV 188
+ +KI + Y+G SF GWQKQ N++Q IE + F E S+
Sbjct: 1 MRYKITIEYNGSSFSGWQKQQHSANSIQETIENAIFNFSGE-------------RVSLHC 47
Query: 189 AGRTDKGVTALQQVCSFYTWKKDVKPRDIEDAI-YHAAPGKLRVISVSEVSRAFHPNFSA 247
GRTD GV AL QV F ++ + I + I YH + V+S V AFH FSA
Sbjct: 48 GGRTDTGVHALGQVAHF-NMERQFELYRIRNGINYHLKAIPIVVLSAEAVDDAFHARFSA 106
Query: 248 KWRRYLY 254
K R Y Y
Sbjct: 107 KKRYYEY 113
>B3QUL0_CHLT3 (tr|B3QUL0) tRNA pseudouridine synthase A OS=Chloroherpeton
thalassium (strain ATCC 35110 / GB-78) GN=truA PE=3 SV=1
Length = 265
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 107/264 (40%), Gaps = 63/264 (23%)
Query: 128 ARLTFKIVLSYHGGSFDGWQKQPG---LNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEG 184
+R K++L Y G F GWQ+QP T+Q IE L + E P+E
Sbjct: 17 SRRNLKMLLEYDGTDFAGWQRQPQNLHQKTIQGEIESVLCRVLQE-----------PVE- 64
Query: 185 SVTVAGRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPN 244
+ AGRTD GV A QV +F T + + ++ A+ P ++++I + + F+
Sbjct: 65 -LIAAGRTDAGVHAKAQVANFLT-ENSLSISRLKHALNGLLPSQIKIIEIEDAPENFNAR 122
Query: 245 FSAKWRRYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSK 304
F AK R Y Y F LT S+ F R Y F
Sbjct: 123 FDAKSRTYRY-FLLT-----RYSALLSRFTGIYR-------------------YDFDARA 157
Query: 305 VNRLLQKLEGKLLSYKMFARDTKASRNEGPPTE---CFLYHARAIEARLPLADNDEETRV 361
+N Q++ G+ D + G T+ C + AR + + L
Sbjct: 158 MNACCQEILGQ--------HDFTSFSKAGSQTKTRICTIEKARWYQRKNGLM-------- 201
Query: 362 MCIELVANRFLRRMVRVLVATSIR 385
+E+ ANRFL MVR+LV T I+
Sbjct: 202 --LEIRANRFLHSMVRLLVGTMIK 223
>D3HRK0_LEGLN (tr|D3HRK0) tRNA pseudouridine synthase A OS=Legionella longbeachae
serogroup 1 (strain NSW150) GN=truA PE=3 SV=1
Length = 262
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 60/130 (46%), Gaps = 20/130 (15%)
Query: 130 LTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVA 189
+ +VL Y G + GWQ Q GL+TVQ +E L D LPI SV A
Sbjct: 1 MRIALVLEYDGSKYHGWQAQTGLHTVQQAVENALSKVAD-----------LPI--SVVCA 47
Query: 190 GRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHA---APGKLRVISVSEVSRAFHPNFS 246
GRTD GV A QV F + K+ R I I+ P + V E+S FH +S
Sbjct: 48 GRTDTGVHATNQVIHFDSEKQ----RSIRAWIHGVNSFLPKDICVKWGKELSEEFHARYS 103
Query: 247 AKWRRYLYIF 256
A RRY Y+
Sbjct: 104 ATARRYRYVI 113
>D1RFZ8_LEGLO (tr|D1RFZ8) tRNA pseudouridine synthase A OS=Legionella longbeachae
D-4968 GN=truA PE=3 SV=1
Length = 262
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 60/130 (46%), Gaps = 20/130 (15%)
Query: 130 LTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVA 189
+ +VL Y G + GWQ Q GL+TVQ +E L D LPI SV A
Sbjct: 1 MRIALVLEYDGSKYHGWQAQTGLHTVQQAVENALSKVAD-----------LPI--SVVCA 47
Query: 190 GRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHA---APGKLRVISVSEVSRAFHPNFS 246
GRTD GV A QV F + K+ R I I+ P + V E+S FH +S
Sbjct: 48 GRTDTGVHATNQVIHFDSEKQ----RSIRAWIHGVNSFLPKDICVKWGKELSEEFHARYS 103
Query: 247 AKWRRYLYIF 256
A RRY Y+
Sbjct: 104 ATARRYRYVI 113
>K0IZ82_AMPXN (tr|K0IZ82) tRNA pseudouridine synthase A OS=Amphibacillus xylanus
(strain ATCC 51415 / DSM 6626 / JCM 7361 / LMG 17667 /
NBRC 15112 / Ep01) GN=truA PE=3 SV=1
Length = 248
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 63/120 (52%), Gaps = 13/120 (10%)
Query: 135 VLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDK 194
++SY G ++ G+Q QP T+Q+VIE L +G P++ +T +GRTD
Sbjct: 6 IISYDGSNYSGYQIQPNQLTIQAVIEAALTKM----------HKGEPVK--ITASGRTDA 53
Query: 195 GVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYLY 254
GV A QV F + + D+ + + A+ PG + V+ V +VS FH F A + Y+Y
Sbjct: 54 GVHAYGQVIHFDS-ELDIPESNWKKALNSLLPGDIVVLDVKQVSENFHARFDAIKKTYIY 112
>K8QFQ2_LACRH (tr|K8QFQ2) tRNA pseudouridine synthase A OS=Lactobacillus
rhamnosus LRHMDP3 GN=truA PE=3 SV=1
Length = 247
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 106/253 (41%), Gaps = 49/253 (19%)
Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
+K+ L+Y G +F G+Q QP TVQ V++ L T+ K + + ++GS GR
Sbjct: 4 YKVTLAYDGTNFAGYQVQPKQRTVQGVLQKAL--------TKMAKGQPVHVDGS----GR 51
Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
TD GV AL QV SF + ++ + A+ P + ++ V+ FH +SAK +R
Sbjct: 52 TDSGVHALGQVISF-DYPGNIPAESMLRAMNSLMPLDIEILKAEIVAADFHARYSAKGKR 110
Query: 252 YLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQK 311
Y Y R + ++ + L Y V ++ L+
Sbjct: 111 YRY-----------------------RVARGYYTNPFNRLYTGHYPYKLDVKRIEVALKD 147
Query: 312 LEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVANRF 371
L G + FA +++ +Y A E P AD + E N F
Sbjct: 148 LVGT-HDFTSFAASGGVIKDKVRT----IYEATVEED--PAADE------LIFEFYGNGF 194
Query: 372 LRRMVRVLVATSI 384
L MVR+LVAT++
Sbjct: 195 LYNMVRILVATAL 207
>K8Q678_LACRH (tr|K8Q678) tRNA pseudouridine synthase A OS=Lactobacillus
rhamnosus LRHMDP2 GN=truA PE=3 SV=1
Length = 247
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 106/253 (41%), Gaps = 49/253 (19%)
Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
+K+ L+Y G +F G+Q QP TVQ V++ L T+ K + + ++GS GR
Sbjct: 4 YKVTLAYDGTNFAGYQVQPKQRTVQGVLQKAL--------TKMAKGQPVHVDGS----GR 51
Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
TD GV AL QV SF + ++ + A+ P + ++ V+ FH +SAK +R
Sbjct: 52 TDSGVHALGQVISF-DYPGNIPAESMLRAMNSLMPLDIEILKAEIVAADFHARYSAKGKR 110
Query: 252 YLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQK 311
Y Y R + ++ + L Y V ++ L+
Sbjct: 111 YRY-----------------------RVARGYYTNPFNRLYTGHYPYKLDVKRIEVALKD 147
Query: 312 LEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVANRF 371
L G + FA +++ +Y A E P AD + E N F
Sbjct: 148 LVGT-HDFTSFAASGGVIKDKVRT----IYEATVEED--PAADE------LIFEFYGNGF 194
Query: 372 LRRMVRVLVATSI 384
L MVR+LVAT++
Sbjct: 195 LYNMVRILVATAL 207
>G6IZG8_LACRH (tr|G6IZG8) tRNA pseudouridine synthase A OS=Lactobacillus
rhamnosus R0011 GN=truA PE=3 SV=1
Length = 247
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 106/253 (41%), Gaps = 49/253 (19%)
Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
+K+ L+Y G +F G+Q QP TVQ V++ L T+ K + + ++GS GR
Sbjct: 4 YKVTLAYDGTNFAGYQVQPKQRTVQGVLQKAL--------TKMAKGQPVHVDGS----GR 51
Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
TD GV AL QV SF + ++ + A+ P + ++ V+ FH +SAK +R
Sbjct: 52 TDSGVHALGQVISF-DYPGNIPAESMLRAMNSLMPLDIEILKAEIVAADFHARYSAKGKR 110
Query: 252 YLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQK 311
Y Y R + ++ + L Y V ++ L+
Sbjct: 111 YRY-----------------------RVARGYYTNPFNRLYTGHYPYKLDVKRIEVALKD 147
Query: 312 LEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVANRF 371
L G + FA +++ +Y A E P AD + E N F
Sbjct: 148 LVGT-HDFTSFAASGGVIKDKVRT----IYEATVEED--PAADE------LIFEFYGNGF 194
Query: 372 LRRMVRVLVATSI 384
L MVR+LVAT++
Sbjct: 195 LYNMVRILVATAL 207
>B5QPU8_LACRH (tr|B5QPU8) tRNA pseudouridine synthase A OS=Lactobacillus
rhamnosus HN001 GN=truA PE=3 SV=1
Length = 247
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 106/253 (41%), Gaps = 49/253 (19%)
Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
+K+ L+Y G +F G+Q QP TVQ V++ L T+ K + + ++GS GR
Sbjct: 4 YKVTLAYDGTNFAGYQVQPKQRTVQGVLQKAL--------TKMAKGQPVHVDGS----GR 51
Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
TD GV AL QV SF + ++ + A+ P + ++ V+ FH +SAK +R
Sbjct: 52 TDSGVHALGQVISF-DYPGNIPAESMLRAMNSLMPLDIEILKAEIVAADFHARYSAKGKR 110
Query: 252 YLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQK 311
Y Y R + ++ + L Y V ++ L+
Sbjct: 111 YRY-----------------------RVARGYYTNPFNRLYTGHYPYKLDVKRIEVALKD 147
Query: 312 LEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVANRF 371
L G + FA +++ +Y A E P AD + E N F
Sbjct: 148 LVGT-HDFTSFAASGGVIKDKVRT----IYEATVEED--PAADE------LIFEFYGNGF 194
Query: 372 LRRMVRVLVATSI 384
L MVR+LVAT++
Sbjct: 195 LYNMVRILVATAL 207
>D9R5X6_CLOSW (tr|D9R5X6) tRNA pseudouridine synthase A OS=Clostridium
saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC
2533 / WM1) GN=truA PE=3 SV=1
Length = 248
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 13/123 (10%)
Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
+++VL Y G +DGWQKQ NT Q+ I+G + E +++ + + + GS GR
Sbjct: 5 YRMVLEYDGSRYDGWQKQG--NTEQT-IQGKI-----EQVLERMTGQAVEVHGS----GR 52
Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
TD GV AL QV +F+ K + ++I++ + P +RVI++ FH +A+ +
Sbjct: 53 TDAGVHALAQVANFHMDGK-MASKEIQEYLNQYLPEDIRVITLEPAKERFHSRLNAQEKT 111
Query: 252 YLY 254
YLY
Sbjct: 112 YLY 114
>R5BSC4_9BACE (tr|R5BSC4) tRNA pseudouridine synthase A OS=Bacteroides sp.
CAG:1060 GN=BN459_00483 PE=4 SV=1
Length = 269
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 98/260 (37%), Gaps = 50/260 (19%)
Query: 130 LTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVA 189
+ + I+LSY G +F GWQ QP +VQ V+E L T + E SVT A
Sbjct: 1 MRYSIILSYCGAAFHGWQIQPDAQSVQGVLESALSTLLREKV-------------SVTGA 47
Query: 190 GRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKW 249
GRTD GV A+ F + +I + P + V ++SE FH F A
Sbjct: 48 GRTDTGVNAIGYTAHF-DCNSAIDTGNIVYKLNAILPRSVVVHAISEADENFHARFDANE 106
Query: 250 RRYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFS-----VSK 304
R Y Y F +++ + E+ SYM++ K
Sbjct: 107 REYTY------------------FLHRVKDPFV-----------ESFSYMYTYPDLDFGK 137
Query: 305 VNRLLQKLEGK--LLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVM 362
+N + L G+ ++ D+K S Y +R D
Sbjct: 138 MNLAAEALCGRHDFRCFEKVGADSKTSVCTIRKALWESYEPTLCASRRTYPDGKAMEDYW 197
Query: 363 CIELVANRFLRRMVRVLVAT 382
+ A+RFLR MVR +V T
Sbjct: 198 KFTICADRFLRNMVRAVVGT 217
>E8LD65_9FIRM (tr|E8LD65) tRNA pseudouridine synthase A OS=Phascolarctobacterium
succinatutens YIT 12067 GN=truA PE=3 SV=1
Length = 250
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 61/124 (49%), Gaps = 14/124 (11%)
Query: 131 TFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAG 190
T K+V++Y G ++ G+QKQ + TVQ+V+E L E + GS G
Sbjct: 3 TIKLVVAYDGSAYHGFQKQKNVQTVQNVLEEALTMLCGEK---------VVTAGS----G 49
Query: 191 RTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWR 250
RTD GV AL Q +F T + ++ A P + V+S E+ FH FSA+W+
Sbjct: 50 RTDTGVHALAQTVTFTT-NGRIPCANLVRAAASLLPEDIVVVSAEEMPEGFHARFSARWK 108
Query: 251 RYLY 254
Y Y
Sbjct: 109 TYHY 112
>B8JBC1_ANAD2 (tr|B8JBC1) tRNA pseudouridine synthase A OS=Anaeromyxobacter
dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=truA PE=3
SV=1
Length = 272
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 64/127 (50%), Gaps = 15/127 (11%)
Query: 129 RLTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTV 188
R ++ + L+Y GG F G+Q+QPGL TVQ +E + L+ G + + V
Sbjct: 3 RRSYALRLAYDGGRFRGFQRQPGLPTVQQALE------------EALERLG--VRAQLHV 48
Query: 189 AGRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAK 248
A RTD GV AL QV SF + + + P + + P + V+ + V +FH SA
Sbjct: 49 AARTDAGVHALAQVVSF-SARAALDPVALRGGLNEGLPEGILVLDAARVGPSFHARGSAI 107
Query: 249 WRRYLYI 255
R Y+Y+
Sbjct: 108 ARTYVYL 114
>R6XMU8_9FIRM (tr|R6XMU8) tRNA pseudouridine synthase A OS=Firmicutes bacterium
CAG:345 GN=BN617_00665 PE=4 SV=1
Length = 253
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 61/121 (50%), Gaps = 13/121 (10%)
Query: 134 IVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTD 193
I+ SY G +F G QKQPGLNTVQ++ E L DE + ++ R D
Sbjct: 6 IIFSYKGTNFYGSQKQPGLNTVQNLFEDTLSRIYDE-------------KIKFCLSSRLD 52
Query: 194 KGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYL 253
+GV A+ +F T K+ +K ++ A+ P ++VI + EV F + +K + YL
Sbjct: 53 RGVHAIFMGGNFKTSKEKMKMDKLKYALNRLFPLYIQVIDIKEVGEDFSARYDSKSKTYL 112
Query: 254 Y 254
Y
Sbjct: 113 Y 113
>A3JQ02_9RHOB (tr|A3JQ02) tRNA pseudouridine synthase A OS=Rhodobacteraceae
bacterium HTCC2150 GN=truA PE=3 SV=1
Length = 265
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 56/123 (45%), Gaps = 13/123 (10%)
Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
+ + + YHG F GWQ+QP L TVQ IE + N +T AGR
Sbjct: 4 YALKIEYHGAPFAGWQRQPELQTVQGAIEAAIRKLEAGN-------------AGITAAGR 50
Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
TD GV A+ QV K R E +H P + +++ ++V FH F A R+
Sbjct: 51 TDAGVHAVGQVAHVDMAKSWDLFRLTEAINHHLKPLPVAIVACAQVDDDFHARFGALERQ 110
Query: 252 YLY 254
YL+
Sbjct: 111 YLF 113
>N1V5T2_9MICC (tr|N1V5T2) tRNA pseudouridine synthase A OS=Arthrobacter
crystallopoietes BAB-32 GN=D477_004956 PE=4 SV=1
Length = 309
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 62/152 (40%), Gaps = 40/152 (26%)
Query: 130 LTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVA 189
L ++ L+Y GG+F GW QPGL TVQ +E L T V P+ +TVA
Sbjct: 16 LRVRMDLAYDGGAFSGWATQPGLLTVQGAVEEGLATLVRR-----------PVR--LTVA 62
Query: 190 GRTDKGVTALQQVCSFYT----WKKDVKPRDIEDA-----------------------IY 222
GRTD GV A QV F W+ + RDI+ A Y
Sbjct: 63 GRTDAGVHARGQVVHFDVEPGEWEALARGRDIDPADSLVRRLRGVLAKVLGGRVGAPVPY 122
Query: 223 HAAPGKLRVISVSEVSRAFHPNFSAKWRRYLY 254
G + V + F FSA WRRY Y
Sbjct: 123 RDLAGAIEVHTAGLAPEGFDARFSALWRRYSY 154
>D5RF84_FUSNC (tr|D5RF84) tRNA pseudouridine synthase A OS=Fusobacterium
nucleatum subsp. nucleatum ATCC 23726 GN=truA PE=3 SV=1
Length = 247
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 61/128 (47%), Gaps = 14/128 (10%)
Query: 128 ARLTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVT 187
R KI Y G S+ G+Q+QP TVQ IE L E E ++
Sbjct: 4 GRKNIKIEFRYDGSSYYGFQRQPNKITVQGEIEKVLRIVTKE-------------EINLI 50
Query: 188 VAGRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSA 247
AGRTD+GV A QV +FYT ++ + + A P + ++SV EV F+ +A
Sbjct: 51 SAGRTDRGVHANHQVSNFYT-SSNIPIEKYKYLLTRALPNDIDILSVEEVDENFNARHNA 109
Query: 248 KWRRYLYI 255
K R Y+YI
Sbjct: 110 KMREYIYI 117
>R5FW10_9FIRM (tr|R5FW10) tRNA pseudouridine synthase A OS=Faecalibacterium sp.
CAG:1138 GN=BN468_00106 PE=4 SV=1
Length = 246
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 63/125 (50%), Gaps = 14/125 (11%)
Query: 130 LTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVA 189
+ +KIV+ Y+G F GWQ+Q GL +VQ + EN ++ + + +T +
Sbjct: 1 MRYKIVVEYNGKDFFGWQRQAGLPSVQEAL---------ENAVEKATGKAV----VMTAS 47
Query: 190 GRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKW 249
GRTD GV AL QV SF + + I A+ P +R+++ E F+ F AK
Sbjct: 48 GRTDAGVHALGQVVSF-DLETSIPTEKIPYAVNVFLPNGVRILACEEADSDFNARFDAKR 106
Query: 250 RRYLY 254
+ YLY
Sbjct: 107 KTYLY 111
>B7RLD9_9RHOB (tr|B7RLD9) tRNA pseudouridine synthase A OS=Roseobacter sp. GAI101
GN=truA PE=3 SV=1
Length = 256
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 61/124 (49%), Gaps = 15/124 (12%)
Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
+ + + Y+G + GWQ+Q GL TVQ VIE L P + AGR
Sbjct: 4 YALKIEYNGAPYVGWQRQIGLATVQGVIEDALAKVE-------------PRAHKIAAAGR 50
Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAI-YHAAPGKLRVISVSEVSRAFHPNFSAKWR 250
TD GV AL QV + ++D P + +A+ +H P + V+ + V FH FSA+ R
Sbjct: 51 TDGGVHALGQV-AHCDMERDWDPFRLSEALNFHMKPNPVAVVDCAPVGPEFHARFSAQER 109
Query: 251 RYLY 254
RY +
Sbjct: 110 RYQF 113
>J9DNL7_9THEM (tr|J9DNL7) tRNA pseudouridine synthase A OS=Thermotoga sp. EMP
GN=truA PE=3 SV=1
Length = 245
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 59/125 (47%), Gaps = 14/125 (11%)
Query: 135 VLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDK 194
V+ Y G +F G+Q QP + TVQ VIE L + Q AGRTD
Sbjct: 7 VIEYDGSNFFGYQGQPDVRTVQGVIEDALERIFKQRIYTQ-------------AAGRTDA 53
Query: 195 GVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYLY 254
GV A Q+ +F + DI++A+ P + V V EVS+ FHP F K R Y Y
Sbjct: 54 GVHANGQLIAFNCPNDRMTTEDIKNAMNANLPDDVYVKEVFEVSKNFHPRFDVKKRIYHY 113
Query: 255 IFPLT 259
F LT
Sbjct: 114 -FILT 117
>H8G3Y6_9PSEU (tr|H8G3Y6) tRNA pseudouridine synthase A OS=Saccharomonospora
azurea NA-128 GN=truA PE=3 SV=1
Length = 306
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 70/168 (41%), Gaps = 41/168 (24%)
Query: 102 NEPGIPAVSDKPEFESVASRGRGGRWARLTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEG 161
+EP IP+ G GG ARL +I L+Y G F GW +QPG TVQ V+E
Sbjct: 8 SEPAIPS-------------GEGG-LARL--RIDLAYDGTDFSGWARQPGRRTVQGVLED 51
Query: 162 PLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKGVTALQQVCSF---------YTWKKDV 212
L + G + GSV VAGRTD GV A QV ++ V
Sbjct: 52 ALSK----------QPPGASLAGSVVVAGRTDAGVHAAGQVVHVDVTRFAGETHSRTTPV 101
Query: 213 KPRDIEDA------IYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYLY 254
P + D + P +RV+ VS F FSA R Y Y
Sbjct: 102 SPDGLPDLDRARHRLNRVLPADVRVLRVSRAPAGFDARFSAAKRHYRY 149
>C7T713_LACRG (tr|C7T713) tRNA pseudouridine synthase A OS=Lactobacillus
rhamnosus (strain ATCC 53103 / GG) GN=truA PE=3 SV=1
Length = 247
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 106/254 (41%), Gaps = 51/254 (20%)
Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
+K+ L+Y G +F G+Q QP TVQ V++ L T+ K + + ++GS GR
Sbjct: 4 YKVTLAYDGTNFAGYQVQPKQRTVQGVLQKAL--------TKMAKGQPVHVDGS----GR 51
Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
TD GV AL QV SF + ++ + A+ P + ++ V+ FH +SAK +R
Sbjct: 52 TDSGVHALGQVISF-DYPGNIPAESMLRAMNSLMPLDIEILKAEIVAADFHARYSAKGKR 110
Query: 252 YLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQK 311
Y Y R + ++ + L Y V ++ L+
Sbjct: 111 YRY-----------------------RVARGYYTNPFNRLYTGHYPYKLDVKRIEVALKD 147
Query: 312 LEGKLLSYKMFARDTKASRNEGPPTECFLYHARAI-EARLPLADNDEETRVMCIELVANR 370
L G + FA +++ R I EA + + D + E N
Sbjct: 148 LVGT-HDFTSFAASGGVIKDK----------VRTIYEATV---EEDPAANELVFEFYGNG 193
Query: 371 FLRRMVRVLVATSI 384
FL MVR+LVAT++
Sbjct: 194 FLYNMVRILVATAL 207
>K0JHB7_BRAPL (tr|K0JHB7) tRNA pseudouridine synthase A OS=Brachyspira pilosicoli
WesB GN=truA PE=3 SV=1
Length = 247
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 60/128 (46%), Gaps = 13/128 (10%)
Query: 133 KIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRT 192
KI + Y G F GWQ QP L TVQ I + Q++ + I G GRT
Sbjct: 5 KITIQYDGTDFFGWQIQPNLRTVQGEIYKAV---------QKIYSKKSTIYG----CGRT 51
Query: 193 DKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRY 252
D GV AL QV +F K V + A+ A P +R+I V +F+ SA +R Y
Sbjct: 52 DAGVHALGQVANFRVEKMLVPIERVTRALNSALPKDIRIIKSEVVDDSFNARASATFREY 111
Query: 253 LYIFPLTD 260
+Y+ +D
Sbjct: 112 IYVVQNSD 119
>J5UAZ3_9FIRM (tr|J5UAZ3) tRNA pseudouridine synthase A OS=Eubacteriaceae
bacterium OBRC8 GN=truA PE=3 SV=1
Length = 245
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 58/119 (48%), Gaps = 14/119 (11%)
Query: 136 LSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKG 195
+SY G ++ GWQKQ ++Q +E + E + + +GRTD G
Sbjct: 8 VSYDGTNYCGWQKQNNAVSIQQTLEKAISNITRE-------------DTELIASGRTDSG 54
Query: 196 VTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYLY 254
V AL QVC+F T ++ + AI P +RVI EV +F+ FSAK + Y+Y
Sbjct: 55 VHALGQVCNFKT-SSNIPSQKFAYAINSKLPKDIRVIESKEVDFSFNARFSAKKKTYMY 112
>R7I2N6_9CLOT (tr|R7I2N6) tRNA pseudouridine synthase A 2 OS=Clostridium sp.
CAG:411 GN=BN648_00414 PE=4 SV=1
Length = 261
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 67/140 (47%), Gaps = 16/140 (11%)
Query: 123 RGGRWARLTFKIVLSYHGGSFDGWQKQP--GLNTVQSVIEGPLGTFVDENKTQQLKDRGL 180
R GR + ++VL Y G +DGWQKQ G NT+Q +E L K G
Sbjct: 10 RKGRKSMRNIRLVLEYDGSRYDGWQKQARKGSNTIQDKLESVLE-----------KMEGE 58
Query: 181 PIEGSVTVAGRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRA 240
IE V A RT+ GV A Q+ +F T D+K +I+ + P + V+ V EV
Sbjct: 59 KIE--VIGAARTEAGVHAYAQIANFKT-NTDMKMYEIKHYLNRFLPMDIAVLEVDEVPER 115
Query: 241 FHPNFSAKWRRYLYIFPLTD 260
FH ++ AK +Y Y + D
Sbjct: 116 FHSSYLAKSFKYEYKISMGD 135
>D8ICF0_BRAP9 (tr|D8ICF0) tRNA pseudouridine synthase A OS=Brachyspira pilosicoli
(strain ATCC BAA-1826 / 95/1000) GN=truA PE=3 SV=1
Length = 247
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 60/128 (46%), Gaps = 13/128 (10%)
Query: 133 KIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRT 192
KI + Y G F GWQ QP L TVQ I + Q++ + I G GRT
Sbjct: 5 KITIQYDGTDFFGWQIQPNLRTVQGEIYKAV---------QKIYSKKSTIYG----CGRT 51
Query: 193 DKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRY 252
D GV AL QV +F K V + A+ A P +R+I V +F+ SA +R Y
Sbjct: 52 DAGVHALGQVANFRVEKMLVPIERVTRALNSALPKDIRIIKSEVVDDSFNARASATFREY 111
Query: 253 LYIFPLTD 260
+Y+ +D
Sbjct: 112 IYVVQNSD 119
>L0F2E2_BRAPL (tr|L0F2E2) tRNA pseudouridine synthase A OS=Brachyspira pilosicoli
P43/6/78 GN=truA PE=3 SV=1
Length = 247
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 60/128 (46%), Gaps = 13/128 (10%)
Query: 133 KIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRT 192
KI + Y G F GWQ QP L TVQ I + Q++ + I G GRT
Sbjct: 5 KITIQYDGTDFFGWQIQPNLRTVQGEIYKAV---------QKIYSKKSTIYG----CGRT 51
Query: 193 DKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRY 252
D GV AL QV +F K V + A+ A P +R+I V +F+ SA +R Y
Sbjct: 52 DAGVHALGQVANFRVEKMLVPIERVTRALNSALPKDIRIIKSEVVDDSFNARASATFREY 111
Query: 253 LYIFPLTD 260
+Y+ +D
Sbjct: 112 IYVVQNSD 119
>J9TSF4_BRAPL (tr|J9TSF4) tRNA pseudouridine synthase A OS=Brachyspira pilosicoli
B2904 GN=truA PE=3 SV=1
Length = 247
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 60/128 (46%), Gaps = 13/128 (10%)
Query: 133 KIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRT 192
KI + Y G F GWQ QP L TVQ I + Q++ + I G GRT
Sbjct: 5 KITIQYDGTDFFGWQIQPNLRTVQGEIYKAV---------QKIYSKKSTIYG----CGRT 51
Query: 193 DKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRY 252
D GV AL QV +F K V + A+ A P +R+I V +F+ SA +R Y
Sbjct: 52 DAGVHALGQVANFRVEKMLVPIERVTRALNSALPKDIRIIKSEVVDDSFNARASATFREY 111
Query: 253 LYIFPLTD 260
+Y+ +D
Sbjct: 112 IYVVQNSD 119
>Q4E7X8_9RICK (tr|Q4E7X8) tRNA pseudouridine synthase (Fragment) OS=Wolbachia
endosymbiont of Drosophila simulans GN=truA PE=3 SV=1
Length = 188
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 63/127 (49%), Gaps = 16/127 (12%)
Query: 130 LTFKIVLSYHGGSFDGWQKQP-GLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTV 188
+ +KI + Y+G SF GWQKQ N++Q IE + F E + ++
Sbjct: 1 MRYKITVEYNGSSFSGWQKQQHSANSIQEKIENAIFNFSGE-------------KIALYC 47
Query: 189 AGRTDKGVTALQQVCSFYTWKKDVKPRDIEDAI-YHAAPGKLRVISVSEVSRAFHPNFSA 247
GRTD GV AL QV F +K+ + I +AI YH + V++ V AFH FSA
Sbjct: 48 GGRTDAGVHALGQVAHF-DMEKECELYRIRNAINYHLKSIPIVVLNAEVVDDAFHARFSA 106
Query: 248 KWRRYLY 254
K R Y Y
Sbjct: 107 KKRYYEY 113
>J8V8U3_FUSNU (tr|J8V8U3) tRNA pseudouridine synthase A OS=Fusobacterium
nucleatum ChDC F128 GN=truA PE=3 SV=1
Length = 245
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 61/129 (47%), Gaps = 14/129 (10%)
Query: 128 ARLTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVT 187
R KI Y G S+ G+Q+QP TVQ IE L E E ++
Sbjct: 2 GRKNIKIEFRYDGSSYYGFQRQPNKITVQGEIEKVLRIVTKE-------------EINLI 48
Query: 188 VAGRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSA 247
AGRTD+GV A QV +FYT ++ + + A P + ++SV EV F+ +A
Sbjct: 49 SAGRTDRGVHANHQVSNFYT-SSNIPIEKYKYLLTRALPNDIDILSVEEVDENFNARHNA 107
Query: 248 KWRRYLYIF 256
K R Y+YI
Sbjct: 108 KMREYVYII 116
>M9WV91_9RICK (tr|M9WV91) tRNA pseudouridine synthase A OS=Wolbachia endosymbiont
of Drosophila simulans wHa GN=truA PE=4 SV=1
Length = 245
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 63/127 (49%), Gaps = 16/127 (12%)
Query: 130 LTFKIVLSYHGGSFDGWQKQP-GLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTV 188
+ +KI + Y+G SF GWQKQ N++Q IE + F E + ++
Sbjct: 1 MRYKITVEYNGSSFSGWQKQQHSANSIQEKIENAIFNFSGE-------------KIALYC 47
Query: 189 AGRTDKGVTALQQVCSFYTWKKDVKPRDIEDAI-YHAAPGKLRVISVSEVSRAFHPNFSA 247
GRTD GV AL QV F +K+ + I +AI YH + V++ V AFH FSA
Sbjct: 48 GGRTDAGVHALGQVAHF-DMEKECELYRIRNAINYHLKSIPIVVLNAEVVDDAFHARFSA 106
Query: 248 KWRRYLY 254
K R Y Y
Sbjct: 107 KKRYYEY 113
>A3SLU7_9RHOB (tr|A3SLU7) tRNA pseudouridine synthase A OS=Roseovarius
nubinhibens ISM GN=truA PE=3 SV=1
Length = 258
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 60/124 (48%), Gaps = 15/124 (12%)
Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
+ + + YHG F GWQ+Q +VQ IE L P ++ AGR
Sbjct: 4 YALKVEYHGAPFAGWQRQKDQPSVQGAIEAALSALE-------------PGAHTIAAAGR 50
Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAI-YHAAPGKLRVISVSEVSRAFHPNFSAKWR 250
TD GV AL QV + ++D P + +A+ YH P + + + + V+ +H FSA R
Sbjct: 51 TDAGVHALGQV-AHCDLRRDWDPFRLSEALNYHLKPAPVAITACAPVAEDWHARFSALER 109
Query: 251 RYLY 254
RYL+
Sbjct: 110 RYLF 113
>A3V9Z5_9RHOB (tr|A3V9Z5) tRNA pseudouridine synthase A OS=Maritimibacter
alkaliphilus HTCC2654 GN=truA PE=3 SV=1
Length = 257
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 63/124 (50%), Gaps = 15/124 (12%)
Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
+ + + Y G F GWQ+Q +VQ +E LG + +P S+ AGR
Sbjct: 4 YALKIEYDGRPFSGWQRQKDQPSVQGAVEAALGKL----------EADVP---SIAAAGR 50
Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAI-YHAAPGKLRVISVSEVSRAFHPNFSAKWR 250
TD GV AL QV + +KD P + +A+ YH P ++ +++ + V FH FSA R
Sbjct: 51 TDAGVHALGQVATC-DLQKDWTPFRLTEALNYHLKPDRVAIVACALVDDGFHARFSAIER 109
Query: 251 RYLY 254
+YL+
Sbjct: 110 QYLF 113
>R5SMN5_9CLOT (tr|R5SMN5) tRNA pseudouridine synthase A 2 OS=Clostridium sp.
CAG:75 GN=BN771_01980 PE=4 SV=1
Length = 291
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 75/278 (26%), Positives = 107/278 (38%), Gaps = 59/278 (21%)
Query: 132 FKIVLSYHGGSFDGWQKQPGL-NTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAG 190
+K+ + Y G + GWQKQ +T+Q IE L ++ E+ + I GS G
Sbjct: 4 YKLTIQYDGTRYSGWQKQGNTADTIQGKIETVLQKWLKED---------IEIHGS----G 50
Query: 191 RTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWR 250
RTD GV AL QV +F T P+ I A+ P +R+ SV++V FH +AK +
Sbjct: 51 RTDAGVHALCQVANFKTSAALSCPQ-IMTALNQYLPQDVRITSVTQVDPRFHARLNAKQK 109
Query: 251 RYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETK--SYMFSVSKVNRL 308
Y Y D G + E F+ D+ L +T S F S VN
Sbjct: 110 HYRYQI---DNG------SAAEVFERKYITRFADTDYFYKLCRQTGHLSATFGDSSVNTD 160
Query: 309 LQKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADND------------ 356
+ + R+ AS N PP + A A L ++D
Sbjct: 161 ISRPS---------ERNNVASNNTMPPQIIYDLEAMQKAAALLCGEHDFKSFCDNKRMKK 211
Query: 357 ------------EETRVMCIELVANRFLRRMVRVLVAT 382
E M ++ N FL MVR+L T
Sbjct: 212 STVRTITNLTIRNENNKMILDFYGNGFLYHMVRILTGT 249
>I1JGM9_SOYBN (tr|I1JGM9) Uncharacterized protein OS=Glycine max PE=4 SV=1
Length = 548
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 67/139 (48%), Gaps = 11/139 (7%)
Query: 122 GRGGRWARLTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLP 181
G R+ R I +Y G + G QK PG T++ +E L +V +Q DRG+P
Sbjct: 42 GTKKRYKRRKVAIFFAYCGVGYQGMQKNPGAKTIEGDLEEAL--YVSGAVPEQ--DRGVP 97
Query: 182 IEGSVTVAGRTDKGVTALQQVCS--FYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSR 239
+ RTDKGV+A+ QV S FY + P + D + P ++R+ V+
Sbjct: 98 KRYDWARSARTDKGVSAVGQVVSGRFY-----IDPPGLVDRLNSNLPSQIRIFGYKRVTA 152
Query: 240 AFHPNFSAKWRRYLYIFPL 258
+F+ RRY+Y+ P+
Sbjct: 153 SFNAKKFCDRRRYVYLIPV 171
>D6LJQ7_9FUSO (tr|D6LJQ7) tRNA pseudouridine synthase A OS=Fusobacterium sp.
1_1_41FAA GN=truA PE=3 SV=1
Length = 246
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 61/127 (48%), Gaps = 14/127 (11%)
Query: 129 RLTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTV 188
R KI Y G + G+Q+QP TVQ IE L E + ++
Sbjct: 3 RKNIKIEFRYDGSRYYGFQRQPDKVTVQGEIEKILKIVTKE-------------DINLIS 49
Query: 189 AGRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAK 248
AGRTD+GV A QQV +FYT ++ + + A P + ++SV EV + F+ AK
Sbjct: 50 AGRTDRGVHANQQVSNFYT-SSNIPVEKYKYLLTRALPKDIDILSVEEVDKNFNARHDAK 108
Query: 249 WRRYLYI 255
R Y+YI
Sbjct: 109 MREYIYI 115
>R5TJ48_9CLOT (tr|R5TJ48) tRNA pseudouridine synthase A 2 OS=Clostridium
hathewayi CAG:224 GN=BN544_01257 PE=4 SV=1
Length = 250
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 60/124 (48%), Gaps = 15/124 (12%)
Query: 132 FKIVLSYHGGSFDGWQKQPGL-NTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAG 190
+KIVL Y G +DGWQKQ NT+Q +EG L LK G P+E V +G
Sbjct: 5 YKIVLQYDGSRYDGWQKQGNTGNTIQGKLEGIL-----------LKLTGRPVE--VHGSG 51
Query: 191 RTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWR 250
RTD GV AL Q +F+ + I P + V+SV +V FH +A +
Sbjct: 52 RTDAGVHALAQTANFHA-DTGMTEDQIRAYFNQYLPEDIAVLSVEKVPDKFHSRLNAVQK 110
Query: 251 RYLY 254
YLY
Sbjct: 111 TYLY 114
>B4V4X1_9ACTO (tr|B4V4X1) tRNA pseudouridine synthase A OS=Streptomyces sp. Mg1
GN=truA PE=3 SV=1
Length = 283
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 66/134 (49%), Gaps = 15/134 (11%)
Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
++ LSY G F GW KQ L TVQ +E L T + +L D P+E +TVAGR
Sbjct: 12 VRLDLSYDGKDFSGWAKQRVLRTVQGELESALTTVM------RLPD---PVE--LTVAGR 60
Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAA---PGKLRVISVSEVSRAFHPNFSAK 248
TD GV A QV F ++V + + A P +RV V+E + F+ FSA
Sbjct: 61 TDAGVHARGQVAQFDV-AEEVWAEHHDKLLRRLAGRLPHDVRVWKVAEAPQGFNARFSAI 119
Query: 249 WRRYLYIFPLTDGG 262
WRRY Y GG
Sbjct: 120 WRRYAYRVGDHQGG 133
>G2MVS0_9THEO (tr|G2MVS0) tRNA pseudouridine synthase A OS=Thermoanaerobacter
wiegelii Rt8.B1 GN=truA PE=3 SV=1
Length = 244
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 103/254 (40%), Gaps = 62/254 (24%)
Query: 134 IVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTD 193
IV+ Y G ++ GWQ Q TVQ V++ + E E ++ A RTD
Sbjct: 6 IVVEYDGTNYHGWQYQENAVTVQEVLQKAIKKVTGE-------------EVNLIGASRTD 52
Query: 194 KGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYL 253
GV AL QV +F T K + + A+ P + V+ +V +FH +SAK +RY
Sbjct: 53 TGVHALYQVANFRTNTK-IPAEKLPYALNSVLPDDIVVVQAKDVEDSFHARYSAKRKRYK 111
Query: 254 YI-----FPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRL 308
YI FP+ T+RN H SY S+ K+
Sbjct: 112 YIILNRKFPM----------------PTMRNYCWH------------ISYPLSIEKMK-- 141
Query: 309 LQKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVA 368
K SY + D A + G + R + L + N+E + IE+ A
Sbjct: 142 ------KAASYLIGTHDFSAFKASGSSKTSTI---RTV-YDLTIEKNEE---FINIEIEA 188
Query: 369 NRFLRRMVRVLVAT 382
N FL MVR++V T
Sbjct: 189 NGFLYNMVRIIVGT 202
>A4EPB5_9RHOB (tr|A4EPB5) tRNA pseudouridine synthase A OS=Roseobacter sp.
SK209-2-6 GN=truA PE=3 SV=1
Length = 255
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 60/124 (48%), Gaps = 15/124 (12%)
Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
F + + YHG F GWQ+Q L +VQ IE L R P ++ AGR
Sbjct: 4 FALKVEYHGKPFAGWQRQKDLPSVQGAIEDAL-------------SRLEPGAHTIAAAGR 50
Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAI-YHAAPGKLRVISVSEVSRAFHPNFSAKWR 250
TD GV L QV + +KD P + +A+ YH P + ++ + V +H FSA R
Sbjct: 51 TDTGVHGLGQV-AHCDLQKDWDPFRLSEALNYHLKPAPVAILDCAGVDEDWHARFSAIER 109
Query: 251 RYLY 254
+YL+
Sbjct: 110 QYLF 113
>D3ALA0_9CLOT (tr|D3ALA0) tRNA pseudouridine synthase A OS=Clostridium hathewayi
DSM 13479 GN=truA PE=3 SV=1
Length = 404
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 60/124 (48%), Gaps = 15/124 (12%)
Query: 132 FKIVLSYHGGSFDGWQKQPGL-NTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAG 190
+KIVL Y G +DGWQKQ NT+Q +EG L LK G P+E V +G
Sbjct: 159 YKIVLQYDGSRYDGWQKQGNTGNTIQGKLEGIL-----------LKLTGRPVE--VHGSG 205
Query: 191 RTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWR 250
RTD GV AL Q +F+ + I P + V+SV +V FH +A +
Sbjct: 206 RTDAGVHALAQTANFHA-DTGMTEDQIRAYFNQYLPEDIAVLSVEKVQDKFHSRLNAVQK 264
Query: 251 RYLY 254
YLY
Sbjct: 265 TYLY 268
>R7N5E4_9FIRM (tr|R7N5E4) tRNA pseudouridine synthase A 1 OS=Firmicutes bacterium
CAG:95 GN=BN816_02746 PE=4 SV=1
Length = 259
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 64/126 (50%), Gaps = 15/126 (11%)
Query: 132 FKIVLSYHGGSFDGWQKQPGL-NTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAG 190
FK++L Y G + GWQ+Q +T+Q +EG L K G P+E + +G
Sbjct: 4 FKMILQYEGTRYKGWQRQESTEHTIQGKLEGIL-----------TKMAGTPVE--IQGSG 50
Query: 191 RTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWR 250
RTD GV AL QV +F+ + + ++I + + P + VISV E S FH +A +
Sbjct: 51 RTDAGVHALGQVANFHADIR-MSEQEIMNYVNSYLPEDIAVISVKEASERFHSRLNATGK 109
Query: 251 RYLYIF 256
Y Y+
Sbjct: 110 TYCYLL 115
>R9JZ63_9FIRM (tr|R9JZ63) tRNA pseudouridine(38-40) synthase OS=Lachnospiraceae
bacterium M18-1 GN=C808_01909 PE=4 SV=1
Length = 245
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 70/261 (26%), Positives = 99/261 (37%), Gaps = 55/261 (21%)
Query: 131 TFKIVLSYHGGSFDGWQKQPGLN-TVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVA 189
T+K+ ++Y G + GWQ+QP TVQ +E + +G P+E V +
Sbjct: 3 TYKLTIAYDGTRYQGWQRQPDTELTVQGTLERTICAL-----------KGFPVE--VNGS 49
Query: 190 GRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKW 249
GRTD GV A Q S K VK ++ + P +RVI V FH +SA
Sbjct: 50 GRTDGGVHAEAQTASIRLPGK-VKEEVFQEELNRMLPEDIRVIGAELVKNGFHARYSAGG 108
Query: 250 RRYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLL 309
+RY Y D+ K D+ + F + +
Sbjct: 109 KRYEYTI---------------------------DTRDKADVFTRRYCFHFPEKLDIKAM 141
Query: 310 QKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVAN 369
+ L+ FA T RNE T +Y R +EE + I N
Sbjct: 142 KAAAASLVGKHDFAAFT--DRNEDQSTVRNIYDIRI----------EEEGSKVTIIYEGN 189
Query: 370 RFLRRMVRVLVATSIREAAAG 390
F+ MVR+L T I EAA G
Sbjct: 190 GFMYHMVRILTGT-ILEAATG 209
>Q5GSK8_WOLTR (tr|Q5GSK8) tRNA pseudouridine synthase A OS=Wolbachia sp. subsp.
Brugia malayi (strain TRS) GN=truA PE=3 SV=1
Length = 249
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 59/125 (47%), Gaps = 16/125 (12%)
Query: 132 FKIVLSYHGGSFDGWQKQP-GLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAG 190
+KI + Y+G SF GWQKQ N++Q IE + F E T + G
Sbjct: 7 YKITIEYNGSSFSGWQKQQHSANSIQETIENAIFNFSGEKVT-------------LHCGG 53
Query: 191 RTDKGVTALQQVCSFYTWKKDVKPRDIEDAI-YHAAPGKLRVISVSEVSRAFHPNFSAKW 249
RTD GV AL QV F ++ + I +AI YH + V++ V FH FSAK
Sbjct: 54 RTDAGVHALGQVAHF-DMERKFELYKIRNAINYHLKSIPIVVLNAETVDNTFHSRFSAKK 112
Query: 250 RRYLY 254
R Y Y
Sbjct: 113 RYYEY 117
>L0DDA4_SINAD (tr|L0DDA4) tRNA pseudouridine synthase A OS=Singulisphaera
acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM
B-2454 / MOB10) GN=truA PE=3 SV=1
Length = 255
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 58/125 (46%), Gaps = 14/125 (11%)
Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
K++LSY G F GWQ+QP TVQ +E + Q+L S GR
Sbjct: 4 IKLLLSYDGTDFSGWQRQPDRRTVQQTLEEAI---------QRLTGAAAVTNAS----GR 50
Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
TD GV A+ QV FYT + P A+ P +RV + ++ +AFH K +R
Sbjct: 51 TDAGVHAIGQVVHFYTVSRHA-PEVFVKALNATLPHDIRVRNAWDMPQAFHSTLDTKSKR 109
Query: 252 YLYIF 256
Y Y+
Sbjct: 110 YRYVI 114
>D1B5U1_THEAS (tr|D1B5U1) tRNA pseudouridine synthase A OS=Thermanaerovibrio
acidaminovorans (strain ATCC 49978 / DSM 6589 / Su883)
GN=truA PE=3 SV=1
Length = 251
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 58/124 (46%), Gaps = 22/124 (17%)
Query: 136 LSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKG 195
+SY G F G+Q+QP L TVQ +E L E T T AGRTD G
Sbjct: 8 VSYVGSCFAGFQRQPNLVTVQGALEESLSALAGEGVT-------------CTGAGRTDAG 54
Query: 196 VTALQQVCSFYTWKKDVKPR-DIED---AIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
V A QV F D+ R D+E AI P L VI ++EV FH F A+WR
Sbjct: 55 VHARGQVVHF-----DMPSRWDLERLRLAIRARLPRGLEVIRLAEVPGDFHARFDARWRE 109
Query: 252 YLYI 255
Y Y+
Sbjct: 110 YRYL 113
>N9WV93_CLOIN (tr|N9WV93) tRNA pseudouridine(38-40) synthase OS=Clostridium
innocuum 2959 GN=HMPREF1094_01771 PE=4 SV=1
Length = 252
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 62/128 (48%), Gaps = 20/128 (15%)
Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGS---VTV 188
+K++LSY G ++ GWQ+Q +++Q IE + IEGS +T
Sbjct: 4 YKVILSYDGTAYGGWQRQTNTHSIQQEIEAAME----------------KIEGSFIRITA 47
Query: 189 AGRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAK 248
+GRTD V AL QV F + KD+ P + A+ P +R+ V V FH F A
Sbjct: 48 SGRTDAHVHALGQVFHFDS-AKDLAPENWRRALNSLLPHDIRIQDVCLVEDDFHARFHAV 106
Query: 249 WRRYLYIF 256
+RY Y+
Sbjct: 107 SKRYDYLI 114
>K8GN11_9CYAN (tr|K8GN11) tRNA pseudouridine synthase A OS=Oscillatoriales
cyanobacterium JSC-12 GN=truA PE=3 SV=1
Length = 283
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 134 IVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTD 193
+V+ Y G F GWQ QP TVQ IE L + + G P+ + AGRTD
Sbjct: 14 LVIQYLGTHFHGWQWQPNYRTVQDEIEQALHSVI-----------GHPVR--IHGAGRTD 60
Query: 194 KGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYL 253
GV A QV F V D + PG + + + + VS A+H FSA WRRY
Sbjct: 61 TGVHAAAQVAHFEA-PGQVPAHRWADILNSRLPGDILIRASASVSSAWHARFSAIWRRYR 119
Query: 254 YIF 256
Y+
Sbjct: 120 YLL 122
>J1F2V9_9LACO (tr|J1F2V9) tRNA pseudouridine synthase A OS=Lactobacillus mali
KCTC 3596 = DSM 20444 GN=truA PE=3 SV=1
Length = 250
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 12/121 (9%)
Query: 134 IVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTD 193
I L+Y G +F G+Q QP TVQ V+E + NK K+ + I GS GRTD
Sbjct: 2 ITLAYDGTNFAGFQSQPNQRTVQDVLEKAV------NKMSTAKEF-VHIFGS----GRTD 50
Query: 194 KGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYL 253
GV A Q+ F + D+ + I + + P ++V+ VS+ FH F+A +RY+
Sbjct: 51 AGVHAFGQIVHF-DLENDIPAQGIVNGLNSMLPLDMQVVDAKIVSKEFHARFTAHGKRYM 109
Query: 254 Y 254
Y
Sbjct: 110 Y 110
>G1VJ80_9FIRM (tr|G1VJ80) tRNA pseudouridine synthase A OS=Erysipelotrichaceae
bacterium 2_2_44A GN=truA PE=3 SV=1
Length = 252
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 62/128 (48%), Gaps = 20/128 (15%)
Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGS---VTV 188
+K++LSY G ++ GWQ+Q +++Q IE + IEGS +T
Sbjct: 4 YKVILSYDGTAYGGWQRQTNTHSIQQEIEAAME----------------KIEGSFIRITA 47
Query: 189 AGRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAK 248
+GRTD V AL QV F + KD+ P + A+ P +R+ V V FH F A
Sbjct: 48 SGRTDAHVHALGQVFHFDS-AKDLAPENWRRALNSLLPHDIRIQDVCLVEDDFHARFHAV 106
Query: 249 WRRYLYIF 256
+RY Y+
Sbjct: 107 SKRYDYLI 114
>K4RJ80_HELHE (tr|K4RJ80) tRNA pseudouridine synthase A OS=Helicobacter
heilmannii ASB1.4 GN=truA PE=3 SV=1
Length = 253
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 60/125 (48%), Gaps = 15/125 (12%)
Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
FK+ L+Y G +F G+ KQ G NT++ +E L + L I +T AGR
Sbjct: 4 FKLTLAYDGSAFMGFAKQEGHNTIEGALESAL--------------KRLNISSLITAAGR 49
Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
TDKGV A+ QV +F P+ + AP + S+ V FHP F A RR
Sbjct: 50 TDKGVHAICQVVAFDAPAFWSAPKLLAHLAPKLAP-YIVCKSLELVDLDFHPRFCAYKRR 108
Query: 252 YLYIF 256
Y Y+F
Sbjct: 109 YRYLF 113
>G9XDD3_9FIRM (tr|G9XDD3) tRNA pseudouridine synthase A OS=Eubacteriaceae
bacterium CM5 GN=truA PE=3 SV=1
Length = 245
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 60/119 (50%), Gaps = 14/119 (11%)
Query: 136 LSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKG 195
+SY G ++ GWQKQ ++Q +E + E+ IE + +GRTD G
Sbjct: 8 VSYDGTNYCGWQKQNNAVSIQQTLEKAISDITRED-----------IE--LIASGRTDSG 54
Query: 196 VTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYLY 254
V AL QVC+F T ++ + AI P +RVI EV AF+ F+AK + Y+Y
Sbjct: 55 VHALGQVCNFKTGS-NIPSQKFAYAINSKLPKDIRVIESKEVDFAFNARFTAKKKTYMY 112
>F9EL35_FUSNU (tr|F9EL35) tRNA pseudouridine synthase A OS=Fusobacterium
nucleatum subsp. animalis ATCC 51191 GN=truA PE=3 SV=1
Length = 245
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 60/128 (46%), Gaps = 14/128 (10%)
Query: 128 ARLTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVT 187
R KI Y G + G+Q+QP TVQ IE L E E ++
Sbjct: 2 GRKNIKIEFRYDGSRYYGFQRQPNKITVQGEIEKILRIVTKE-------------EINLI 48
Query: 188 VAGRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSA 247
AGRTD+GV A QV +FYT ++ + + A P + ++SV EV F+ +A
Sbjct: 49 SAGRTDRGVHAYHQVSNFYT-SSNIPIEKYKYLLTRALPNDIDILSVEEVDENFNARHNA 107
Query: 248 KWRRYLYI 255
K R Y+YI
Sbjct: 108 KMREYIYI 115
>K4RMQ9_HELHE (tr|K4RMQ9) tRNA pseudouridine synthase OS=Helicobacter heilmannii
ASB1.4 PE=3 SV=1
Length = 178
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 61/128 (47%), Gaps = 21/128 (16%)
Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
FK+ L+Y G +F G+ KQ G NT++ +E L + L I +T AGR
Sbjct: 4 FKLTLAYDGSAFMGFAKQEGHNTIEGALESAL--------------KRLNISSLITAAGR 49
Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVI---SVSEVSRAFHPNFSAK 248
TDKGV A+ QV +F P+ + H AP I S+ V FHP F A
Sbjct: 50 TDKGVHAICQVVAFDAPAFWSAPKLLA----HLAPKLAPYIVCKSLELVDLDFHPRFCAY 105
Query: 249 WRRYLYIF 256
RRY Y+F
Sbjct: 106 KRRYRYLF 113
>R5S863_9CLOT (tr|R5S863) tRNA pseudouridine synthase A 1 OS=Clostridium sp.
CAG:122 GN=BN479_00615 PE=4 SV=1
Length = 252
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 62/256 (24%), Positives = 102/256 (39%), Gaps = 54/256 (21%)
Query: 132 FKIVLSYHGGSFDGWQKQPGL-NTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAG 190
FK+ + Y G F GWQKQ NT+Q IE L E + I GS G
Sbjct: 4 FKLTIQYDGTRFSGWQKQGNTDNTIQGKIENILSKMTGEE---------IEIHGS----G 50
Query: 191 RTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWR 250
RTD GV A++Q+ +F T + D+ D++ P +R++ + FH +AK +
Sbjct: 51 RTDAGVHAIKQIANFKT-NATLSELDVRDSLNKYLPLDIRILDAEKTDNRFHARLNAKGK 109
Query: 251 RYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQ 310
Y Y T+ N E+ + + + T++Y +
Sbjct: 110 HYRY---------------------TIDNGEVANVFERKYMTRLTQNYDXXXQNYDIEAM 148
Query: 311 KLEGKLL----SYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIEL 366
K KL +K F + + ++ R I + + + ++D ++ I+
Sbjct: 149 KKAAKLFIGEHDFKSFCDNKRMKKST----------IRTI-SDISINNSDG---IITIDF 194
Query: 367 VANRFLRRMVRVLVAT 382
N FL MVR+L T
Sbjct: 195 YGNGFLYHMVRILTGT 210
>F2LWT0_HIPMA (tr|F2LWT0) tRNA pseudouridine synthase A OS=Hippea maritima
(strain ATCC 700847 / DSM 10411 / MH2) GN=truA PE=3 SV=1
Length = 241
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 62/128 (48%), Gaps = 16/128 (12%)
Query: 136 LSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKG 195
++Y G ++ G+Q QP + TVQ IE L R + + AGRTD G
Sbjct: 7 IAYDGTNYSGFQIQPDVKTVQGEIEKAL-------------KRIFKTDLRINFAGRTDAG 53
Query: 196 VTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYLYI 255
V A +QV F D++ ++ A+ P +R+ SV V +FH +SAK+R Y+Y
Sbjct: 54 VHAFEQVIDFPVIA-DIETYSLKKALNSVLPEDIRIKSVKIVDNSFHSRYSAKFREYVYF 112
Query: 256 FPLTDGGY 263
DG Y
Sbjct: 113 --AFDGEY 118
>E2SNP6_9FIRM (tr|E2SNP6) tRNA pseudouridine synthase A OS=Erysipelotrichaceae
bacterium 3_1_53 GN=truA PE=3 SV=1
Length = 253
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 64/129 (49%), Gaps = 22/129 (17%)
Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPL----GTFVDENKTQQLKDRGLPIEGSVT 187
+K++LSY G ++ GWQ+Q +++Q +E + G FV S+T
Sbjct: 4 YKVILSYDGSAYGGWQRQTNTHSIQQEVEAAIEKVEGRFV-----------------SIT 46
Query: 188 VAGRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSA 247
+GRTD V AL QV F + K ++P + + A+ P +R+ V V AFH F A
Sbjct: 47 ASGRTDAHVHALGQVFHFDSVKH-LEPENWKRALNSLLPHDIRIQEVCLVDDAFHARFHA 105
Query: 248 KWRRYLYIF 256
+RY Y+
Sbjct: 106 ISKRYDYLI 114
>A8MGJ9_ALKOO (tr|A8MGJ9) tRNA pseudouridine synthase A OS=Alkaliphilus
oremlandii (strain OhILAs) GN=truA PE=3 SV=1
Length = 245
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 63/123 (51%), Gaps = 13/123 (10%)
Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
K+V+ Y G +DGWQ+ L + I+G + ++E + + I GS GR
Sbjct: 4 IKLVIEYDGSRYDGWQR---LKDSEQTIQGKIEKVLNE-----MTGSSVEIIGS----GR 51
Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
TD GV A Q+ +F T K + RDI + + H P + V V EVS FH ++A+ ++
Sbjct: 52 TDAGVHAKNQIANFKT-KSSMSIRDIHNYMNHYLPQDIVVKEVKEVSDRFHSRYNAQKKK 110
Query: 252 YLY 254
Y Y
Sbjct: 111 YTY 113
>Q2LUS6_SYNAS (tr|Q2LUS6) tRNA pseudouridine synthase A OS=Syntrophus
aciditrophicus (strain SB) GN=truA PE=3 SV=1
Length = 259
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 61/126 (48%), Gaps = 14/126 (11%)
Query: 129 RLTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTV 188
R K+VL Y G ++ GWQ+Q L T+Q ++E + E + + GS
Sbjct: 15 RRNIKLVLEYDGTAYRGWQRQGNLPTIQKILEESIARITQEP---------VILHGS--- 62
Query: 189 AGRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAK 248
GRTD GV AL QV +F T + + ++ + PG + + +V FH +SAK
Sbjct: 63 -GRTDAGVHALNQVANFRTSSR-IPAANLLRGLNSLLPGDIVIRETEDVDEEFHSRYSAK 120
Query: 249 WRRYLY 254
+ YLY
Sbjct: 121 SKSYLY 126
>I0ALT9_IGNAJ (tr|I0ALT9) tRNA pseudouridine synthase A OS=Ignavibacterium album
(strain DSM 19864 / JCM 16511 / NBRC 101810 / Mat9-16)
GN=truA PE=3 SV=1
Length = 242
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 60/124 (48%), Gaps = 14/124 (11%)
Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
+K++L Y G + GWQ Q T+Q I + + E E ++ +GR
Sbjct: 4 YKLILQYDGSRYSGWQIQENSITIQQEIISAIKIILKE-------------EVNLIGSGR 50
Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
TD GV AL QV +F T +K++ + A+ P + V SV +V FH F AK R
Sbjct: 51 TDSGVHALGQVANFRT-EKEIDLYKFQFALNSILPNDISVTSVEKVHENFHSRFDAKKRT 109
Query: 252 YLYI 255
Y+Y+
Sbjct: 110 YIYL 113
>B9R8H6_RICCO (tr|B9R8H6) Pseudouridylate synthase, putative OS=Ricinus communis
GN=RCOM_1599840 PE=4 SV=1
Length = 584
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 63/135 (46%), Gaps = 11/135 (8%)
Query: 126 RWARLTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGS 185
R+ R I +Y G + G QK PG T IEG L + + +DRG P
Sbjct: 50 RYKRRKMAIFFAYCGVGYQGMQKNPGAKT----IEGDLEEALFHSGAVPEQDRGCPKRYD 105
Query: 186 VTVAGRTDKGVTALQQVCS--FYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHP 243
+ RTDKGV+A+ QV S FY V P + D + P ++R+ V+ +F+
Sbjct: 106 WARSARTDKGVSAVGQVISGRFY-----VDPPGLVDRLNSILPSQIRIFGYKRVTASFNA 160
Query: 244 NFSAKWRRYLYIFPL 258
RRY+Y+ P+
Sbjct: 161 KKFCDRRRYVYLIPV 175
>N1WRC8_9FLAO (tr|N1WRC8) tRNA pseudouridine synthase A TruA OS=Psychroflexus
gondwanensis ACAM 44 GN=pgond44_06755 PE=4 SV=1
Length = 261
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 64/135 (47%), Gaps = 12/135 (8%)
Query: 126 RWARLTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGS 185
++ R + I L Y G + GWQKQPG+ TV+ ++ L F+ EN Q+ K
Sbjct: 2 QYKRFYYLIQLQYLGFRYHGWQKQPGVLTVEHMLHKTLN-FILEN--QRFK--------- 49
Query: 186 VTVAGRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNF 245
V AGRTD V+A Q + ++ ++ D P +R +S+ E + F+
Sbjct: 50 VLAAGRTDAMVSANQTYIELFVYEDELDLETFLDQFNKNLPQDIRALSIEETTADFNIIQ 109
Query: 246 SAKWRRYLYIFPLTD 260
K + YLY F L +
Sbjct: 110 HPKIKEYLYFFCLKE 124
>I4M5W1_GARVA (tr|I4M5W1) tRNA pseudouridine synthase A OS=Gardnerella vaginalis
00703C2mash GN=truA PE=3 SV=1
Length = 303
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 73/290 (25%), Positives = 114/290 (39%), Gaps = 75/290 (25%)
Query: 130 LTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVA 189
+ ++ L+Y GG F GW KQP L TVQ V+E L + NK D P+ ++VA
Sbjct: 1 MRLRLDLAYDGGDFYGWAKQPTLRTVQGVLEDALHKVLRVNK----DDASEPLR--LSVA 54
Query: 190 GRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYH---------------AAPGKLRVISV 234
GRTD GV A QVC DV +++ + H P + + SV
Sbjct: 55 GRTDTGVHASYQVCHL-----DVSESILQNCVGHTNLTPVKALEYRLCGVLPKDISIHSV 109
Query: 235 SEVSRAFHPNFSAKWRRYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENE 294
S F FSA R Y+Y I D++++ +L+
Sbjct: 110 SIAPSGFDARFSALDRTYVY--------------------------RISDAANRANLDPR 143
Query: 295 TKSYM------FSVSKVNRLLQKLEGKLLSYKMFARDTKASRNEGPPTECFLYHARAIEA 348
+ ++ +V +N+ + G L + FAR G C +A+
Sbjct: 144 MRGFVLQLDYDLNVDAMNQAASLIVG-LHDFGSFARPNPG----GTTIRCV---KKAVWN 195
Query: 349 RLPLAD--NDEETRVMCIE-------LVANRFLRRMVRVLVATSIREAAA 389
R+ + + ++ CIE +VA+ F MVR LV ++ A
Sbjct: 196 RVFVGSCLSKSTGKIPCIENGLLEFTIVADAFAHNMVRSLVGACVQVGCA 245