Miyakogusa Predicted Gene

Lj4g3v3002740.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v3002740.1 Non Chatacterized Hit- tr|C6SW29|C6SW29_SOYBN
Putative uncharacterized protein OS=Glycine max PE=2
S,33.16,0.000000009,seg,NULL,CUFF.52037.1
         (188 letters)

Database: trembl 
           41,451,118 sequences; 13,208,986,710 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

C6SW29_SOYBN (tr|C6SW29) Uncharacterized protein OS=Glycine max ...    57   3e-06

>C6SW29_SOYBN (tr|C6SW29) Uncharacterized protein OS=Glycine max PE=2 SV=1
          Length = 129

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 70/167 (41%), Gaps = 66/167 (39%)

Query: 1   MTSVQCYKTCEQTCQQKNQHGSYGQKVADLFKGNHGHSKDKECHTGHNGHSNGAHTGHLV 60
           M SVQC+KTC+ +CQQ+NQH S+GQKV+DLFKG+            HN HS+   T    
Sbjct: 1   MASVQCHKTCKVSCQQENQHASFGQKVSDLFKGHQ-----------HNDHSSNYAT---- 45

Query: 61  XXXXXXXXXXXXXXXXXXXXKDGYKVNHGHSKEGFEVKRCSKTEVVSQSA---GTKAHKT 117
                                                    +T+V+SQS    G    KT
Sbjct: 46  -----------------------------------------QTKVLSQSGSGLGPFTTKT 64

Query: 118 ELSCSKTQ----TTHAAGGTKH---KGSTTRKHKKNLFGKIKDGLSG 157
           +  C   Q    TTH +    H   +G   R+HK+ +   IKD LSG
Sbjct: 65  QTQCGCPQTHLSTTHGSNTKGHGHGQGRIKREHKRGMLQNIKDRLSG 111