Miyakogusa Predicted Gene
- Lj4g3v2238990.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v2238990.1 tr|I1LYF8|I1LYF8_SOYBN tRNA pseudouridine
synthase (Fragment) OS=Glycine max PE=3 SV=1,86.99,0,hisT_truA: tRNA
pseudouridine(38-40) synthase,Pseudouridine synthase I, TruA;
PSEUDOURIDYLATE SYNTHA,CUFF.50549.1
(273 letters)
Database: trembl
41,451,118 sequences; 13,208,986,710 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
K7MJW1_SOYBN (tr|K7MJW1) tRNA pseudouridine synthase OS=Glycine ... 502 e-140
K7LZ80_SOYBN (tr|K7LZ80) tRNA pseudouridine synthase OS=Glycine ... 494 e-137
G7JR09_MEDTR (tr|G7JR09) tRNA pseudouridine synthase OS=Medicago... 489 e-136
G7JR08_MEDTR (tr|G7JR08) tRNA pseudouridine synthase OS=Medicago... 488 e-136
I1LYF8_SOYBN (tr|I1LYF8) tRNA pseudouridine synthase OS=Glycine ... 484 e-134
D7T696_VITVI (tr|D7T696) tRNA pseudouridine synthase OS=Vitis vi... 455 e-126
A5BHS7_VITVI (tr|A5BHS7) tRNA pseudouridine synthase OS=Vitis vi... 444 e-122
M5XCI2_PRUPE (tr|M5XCI2) Uncharacterized protein OS=Prunus persi... 440 e-121
M4CAJ8_BRARP (tr|M4CAJ8) tRNA pseudouridine synthase OS=Brassica... 422 e-116
M1CLH0_SOLTU (tr|M1CLH0) tRNA pseudouridine synthase OS=Solanum ... 417 e-114
B9S012_RICCO (tr|B9S012) tRNA pseudouridine synthase OS=Ricinus ... 416 e-114
M0RPF3_MUSAM (tr|M0RPF3) tRNA pseudouridine synthase OS=Musa acu... 414 e-113
K4C1Z9_SOLLC (tr|K4C1Z9) tRNA pseudouridine synthase OS=Solanum ... 413 e-113
D7L612_ARALL (tr|D7L612) tRNA pseudouridine synthase OS=Arabidop... 403 e-110
Q9M904_ARATH (tr|Q9M904) tRNA pseudouridine synthase OS=Arabidop... 402 e-110
A1A6J3_ARATH (tr|A1A6J3) tRNA pseudouridine synthase OS=Arabidop... 401 e-109
Q0WPX6_ARATH (tr|Q0WPX6) tRNA pseudouridine synthase OS=Arabidop... 401 e-109
K7LZ81_SOYBN (tr|K7LZ81) tRNA pseudouridine synthase OS=Glycine ... 400 e-109
I1PU08_ORYGL (tr|I1PU08) tRNA pseudouridine synthase OS=Oryza gl... 396 e-108
J3M5H1_ORYBR (tr|J3M5H1) tRNA pseudouridine synthase OS=Oryza br... 389 e-106
I1I448_BRADI (tr|I1I448) tRNA pseudouridine synthase OS=Brachypo... 374 e-101
Q1ZY14_BETVU (tr|Q1ZY14) tRNA pseudouridine synthase OS=Beta vul... 373 e-101
K3YYB1_SETIT (tr|K3YYB1) tRNA pseudouridine synthase OS=Setaria ... 373 e-101
F2D073_HORVD (tr|F2D073) tRNA pseudouridine synthase OS=Hordeum ... 370 e-100
M7ZE76_TRIUA (tr|M7ZE76) tRNA pseudouridine synthase A 1 OS=Trit... 370 e-100
M0UT32_HORVD (tr|M0UT32) tRNA pseudouridine synthase OS=Hordeum ... 337 3e-90
B7EV41_ORYSJ (tr|B7EV41) tRNA pseudouridine synthase OS=Oryza sa... 313 5e-83
R0G6L9_9BRAS (tr|R0G6L9) Uncharacterized protein OS=Capsella rub... 308 2e-81
B8A3F7_MAIZE (tr|B8A3F7) tRNA pseudouridine synthase OS=Zea mays... 306 6e-81
M0UT36_HORVD (tr|M0UT36) tRNA pseudouridine synthase OS=Hordeum ... 300 3e-79
B9FNM5_ORYSJ (tr|B9FNM5) tRNA pseudouridine synthase OS=Oryza sa... 296 7e-78
D7MWN1_ARALL (tr|D7MWN1) tRNA pseudouridine synthase OS=Arabidop... 293 5e-77
C5XVS8_SORBI (tr|C5XVS8) tRNA pseudouridine synthase OS=Sorghum ... 284 2e-74
B4FLG8_MAIZE (tr|B4FLG8) tRNA pseudouridine synthase OS=Zea mays... 283 3e-74
A9RTE3_PHYPA (tr|A9RTE3) tRNA pseudouridine synthase OS=Physcomi... 275 9e-72
B9HMQ8_POPTR (tr|B9HMQ8) tRNA pseudouridine synthase (Fragment) ... 268 2e-69
D8QUD6_SELML (tr|D8QUD6) tRNA pseudouridine synthase (Fragment) ... 244 2e-62
M0UT37_HORVD (tr|M0UT37) tRNA pseudouridine synthase OS=Hordeum ... 244 3e-62
D8R403_SELML (tr|D8R403) tRNA pseudouridine synthase (Fragment) ... 243 4e-62
M0UT31_HORVD (tr|M0UT31) tRNA pseudouridine synthase OS=Hordeum ... 243 7e-62
M1CLG9_SOLTU (tr|M1CLG9) tRNA pseudouridine synthase OS=Solanum ... 240 4e-61
F8KVL2_PARAV (tr|F8KVL2) tRNA pseudouridine synthase A OS=Parach... 186 6e-45
F6DPF5_DESRL (tr|F6DPF5) tRNA pseudouridine synthase A OS=Desulf... 181 2e-43
K8DYI1_9FIRM (tr|K8DYI1) tRNA pseudouridine synthase A OS=Desulf... 181 3e-43
M1Z647_9CLOT (tr|M1Z647) tRNA pseudouridine synthase A OS=Clostr... 179 1e-42
D9RZP5_THEOJ (tr|D9RZP5) tRNA pseudouridine synthase A OS=Thermo... 177 3e-42
D1R655_9CHLA (tr|D1R655) tRNA pseudouridine synthase A OS=Parach... 176 1e-41
B4AN00_BACPU (tr|B4AN00) tRNA pseudouridine synthase A OS=Bacill... 175 2e-41
F7NF63_9FIRM (tr|F7NF63) tRNA pseudouridine synthase A OS=Aceton... 174 3e-41
K2NFD2_9BACI (tr|K2NFD2) tRNA pseudouridine synthase A OS=Bacill... 173 4e-41
F0DP17_9FIRM (tr|F0DP17) tRNA pseudouridine synthase A OS=Desulf... 173 5e-41
I4VBL7_9BACI (tr|I4VBL7) tRNA pseudouridine synthase A OS=Bacill... 172 1e-40
F6B5S6_DESCC (tr|F6B5S6) tRNA pseudouridine synthase A OS=Desulf... 172 1e-40
R7RU36_9CLOT (tr|R7RU36) tRNA pseudouridine synthase A OS=Thermo... 171 2e-40
C1ECC9_MICSR (tr|C1ECC9) tRNA pseudouridine synthase (Fragment) ... 171 2e-40
F8LB99_9CHLA (tr|F8LB99) tRNA pseudouridine synthase A OS=Waddli... 171 3e-40
D6YUD5_WADCW (tr|D6YUD5) tRNA pseudouridine synthase A OS=Waddli... 171 3e-40
M5R6T6_9BACI (tr|M5R6T6) Trna pseudouridine synthase a OS=Bacill... 170 5e-40
C9R8G0_AMMDK (tr|C9R8G0) tRNA pseudouridine synthase A OS=Ammoni... 170 5e-40
I4C033_DESTA (tr|I4C033) tRNA pseudouridine synthase A OS=Desulf... 169 7e-40
R7JVK9_9FIRM (tr|R7JVK9) tRNA pseudouridine synthase A 2 OS=Blau... 168 2e-39
G4F0V5_BACIU (tr|G4F0V5) tRNA pseudouridine synthase A OS=Bacill... 168 2e-39
M1Z1W5_9BACT (tr|M1Z1W5) tRNA pseudouridine synthase A OS=Nitros... 167 3e-39
B9XDA1_9BACT (tr|B9XDA1) tRNA pseudouridine synthase A OS=Pedosp... 167 3e-39
H2AB94_BACAM (tr|H2AB94) tRNA pseudouridine synthase A OS=Bacill... 167 4e-39
I0K114_9BACT (tr|I0K114) tRNA pseudouridine synthase A OS=Methyl... 167 5e-39
I3IQP0_9PLAN (tr|I3IQP0) tRNA pseudouridine synthase A OS=planct... 167 5e-39
M4X5M1_BACIU (tr|M4X5M1) tRNA pseudouridine synthase A OS=Bacill... 166 5e-39
M4KMF2_BACIU (tr|M4KMF2) tRNA pseudouridine synthase A OS=Bacill... 166 5e-39
G4P985_BACIU (tr|G4P985) tRNA pseudouridine synthase A OS=Bacill... 166 6e-39
E8VIK0_BACST (tr|E8VIK0) tRNA pseudouridine synthase A OS=Bacill... 166 6e-39
N0D8Q9_BACIU (tr|N0D8Q9) tRNA pseudouridine synthase A OS=Bacill... 166 6e-39
M2VZ91_BACIU (tr|M2VZ91) tRNA pseudouridine synthase A OS=Bacill... 166 6e-39
M1UBX6_BACIU (tr|M1UBX6) tRNA pseudouridine synthase A OS=Bacill... 166 6e-39
L8AC68_BACIU (tr|L8AC68) tRNA pseudouridine synthase A OS=Bacill... 166 6e-39
L0CWB5_BACIU (tr|L0CWB5) tRNA pseudouridine synthase A OS=Bacill... 166 6e-39
J7JU27_BACIU (tr|J7JU27) tRNA pseudouridine synthase A OS=Bacill... 166 6e-39
D4G4D9_BACNA (tr|D4G4D9) tRNA pseudouridine synthase A OS=Bacill... 166 6e-39
K2EDQ1_9BACT (tr|K2EDQ1) tRNA pseudouridine synthase A OS=uncult... 166 8e-39
M5NZ79_9BACI (tr|M5NZ79) tRNA pseudouridine synthase A OS=Bacill... 166 1e-38
F4LSW8_TEPAE (tr|F4LSW8) tRNA pseudouridine synthase A OS=Tepida... 165 1e-38
L0RXI5_TEPAE (tr|L0RXI5) tRNA pseudouridine synthase A OS=Tepida... 165 1e-38
D4M3H8_9FIRM (tr|D4M3H8) tRNA pseudouridine synthase A OS=Rumino... 165 1e-38
M1L6Q0_BACAM (tr|M1L6Q0) tRNA pseudouridine synthase A OS=Bacill... 165 1e-38
K9E8P1_9LACT (tr|K9E8P1) tRNA pseudouridine synthase A OS=Alloio... 165 2e-38
C2EVC9_9LACO (tr|C2EVC9) tRNA pseudouridine synthase A OS=Lactob... 164 2e-38
K2HU91_BACAM (tr|K2HU91) tRNA pseudouridine synthase A OS=Bacill... 164 2e-38
I0EZN3_9BACI (tr|I0EZN3) tRNA pseudouridine synthase A OS=Bacill... 164 2e-38
E8T632_THEA1 (tr|E8T632) tRNA pseudouridine synthase A OS=Thermo... 164 3e-38
E3E458_BACA1 (tr|E3E458) tRNA pseudouridine synthase A OS=Bacill... 164 3e-38
I4XCJ1_BACAT (tr|I4XCJ1) tRNA pseudouridine synthase A OS=Bacill... 164 3e-38
F9N497_9FIRM (tr|F9N497) tRNA pseudouridine synthase A OS=Veillo... 164 3e-38
J0DHG1_9BACI (tr|J0DHG1) tRNA pseudouridine synthase A OS=Bacill... 164 3e-38
Q2B2Q1_9BACI (tr|Q2B2Q1) tRNA pseudouridine synthase A OS=Bacill... 164 4e-38
A1HQP5_9FIRM (tr|A1HQP5) tRNA pseudouridine synthase A OS=Thermo... 163 4e-38
G4NQI0_BACPN (tr|G4NQI0) tRNA pseudouridine synthase A OS=Bacill... 163 5e-38
F3AKK8_9FIRM (tr|F3AKK8) tRNA pseudouridine synthase A OS=Lachno... 163 5e-38
Q0TRP6_CLOP1 (tr|Q0TRP6) tRNA pseudouridine synthase A OS=Clostr... 163 7e-38
Q0SU25_CLOPS (tr|Q0SU25) tRNA pseudouridine synthase A OS=Clostr... 163 7e-38
I7LIW8_9CLOT (tr|I7LIW8) tRNA pseudouridine synthase A OS=Calora... 162 8e-38
M1X8P1_BACAM (tr|M1X8P1) tRNA pseudouridine synthase A OS=Bacill... 162 9e-38
E9RRG1_9FIRM (tr|E9RRG1) tRNA pseudouridine synthase A OS=Lachno... 162 9e-38
R1CWP0_9CLOT (tr|R1CWP0) tRNA pseudouridine synthase A OS=Clostr... 162 1e-37
E0TZI1_BACPZ (tr|E0TZI1) tRNA pseudouridine synthase A OS=Bacill... 162 1e-37
D5N5F7_BACPN (tr|D5N5F7) tRNA pseudouridine synthase A OS=Bacill... 162 1e-37
I2C0R5_BACAM (tr|I2C0R5) tRNA pseudouridine synthase A OS=Bacill... 162 1e-37
H8XDD7_BACAM (tr|H8XDD7) tRNA pseudouridine synthase A OS=Bacill... 162 1e-37
B1RBH0_CLOPF (tr|B1RBH0) tRNA pseudouridine synthase A OS=Clostr... 162 1e-37
B1RGY6_CLOPF (tr|B1RGY6) tRNA pseudouridine synthase A OS=Clostr... 162 1e-37
R6EFL0_9FIRM (tr|R6EFL0) tRNA pseudouridine synthase A 1 OS=Lach... 161 2e-37
C1N6R6_MICPC (tr|C1N6R6) tRNA pseudouridine synthase (Fragment) ... 161 2e-37
H7CV53_CLOPF (tr|H7CV53) tRNA pseudouridine synthase A OS=Clostr... 161 2e-37
H1CQ61_CLOPF (tr|H1CQ61) tRNA pseudouridine synthase A OS=Clostr... 161 2e-37
B1RN56_CLOPF (tr|B1RN56) tRNA pseudouridine synthase A OS=Clostr... 161 2e-37
B1BY96_CLOPF (tr|B1BY96) tRNA pseudouridine synthase A OS=Clostr... 161 2e-37
B1BEH0_CLOPF (tr|B1BEH0) tRNA pseudouridine synthase A OS=Clostr... 161 2e-37
J8AIE2_BACCE (tr|J8AIE2) tRNA pseudouridine synthase A OS=Bacill... 161 2e-37
R5NKZ2_9FIRM (tr|R5NKZ2) tRNA pseudouridine synthase A OS=Eubact... 161 2e-37
F7JKX0_9FIRM (tr|F7JKX0) tRNA pseudouridine synthase A OS=Lachno... 161 2e-37
E0E4E9_9FIRM (tr|E0E4E9) tRNA pseudouridine synthase A OS=Peptos... 161 2e-37
F8L5L1_SIMNZ (tr|F8L5L1) tRNA pseudouridine synthase A OS=Simkan... 161 2e-37
R6NSJ1_9FIRM (tr|R6NSJ1) tRNA pseudouridine synthase A 2 OS=Rumi... 161 3e-37
B1V2T0_CLOPF (tr|B1V2T0) tRNA pseudouridine synthase A OS=Clostr... 161 3e-37
A8MLH4_ALKOO (tr|A8MLH4) tRNA pseudouridine synthase A OS=Alkali... 161 3e-37
F7YYT8_9THEM (tr|F7YYT8) tRNA pseudouridine synthase A OS=Thermo... 161 3e-37
R0PN43_BACAT (tr|R0PN43) tRNA pseudouridine synthase A OS=Bacill... 160 3e-37
L0BJ96_BACAM (tr|L0BJ96) tRNA pseudouridine synthase A OS=Bacill... 160 3e-37
M8CVQ8_THETY (tr|M8CVQ8) Pseudouridylate synthase I OS=Thermoana... 160 3e-37
I9ACI7_9THEO (tr|I9ACI7) tRNA pseudouridine synthase A OS=Thermo... 160 3e-37
J9A2E2_BACCE (tr|J9A2E2) tRNA pseudouridine synthase A OS=Bacill... 160 4e-37
J8RSN2_BACCE (tr|J8RSN2) tRNA pseudouridine synthase A OS=Bacill... 160 4e-37
H3RRD5_9LACO (tr|H3RRD5) tRNA pseudouridine synthase A OS=Lactob... 160 4e-37
F4A2V1_MAHA5 (tr|F4A2V1) tRNA pseudouridine synthase A OS=Mahell... 160 5e-37
E1UK02_BACAS (tr|E1UK02) tRNA pseudouridine synthase A OS=Bacill... 160 5e-37
R4KK16_9FIRM (tr|R4KK16) Pseudouridylate synthase I OS=Desulfoto... 160 5e-37
G0IEP0_BACAM (tr|G0IEP0) tRNA pseudouridine synthase A OS=Bacill... 160 5e-37
F4ERX2_BACAM (tr|F4ERX2) tRNA pseudouridine synthase A OS=Bacill... 160 5e-37
F4E1T5_BACAM (tr|F4E1T5) tRNA pseudouridine synthase A OS=Bacill... 160 5e-37
E8UV17_THEBF (tr|E8UV17) tRNA pseudouridine synthase A OS=Thermo... 159 7e-37
E1SZF9_THESX (tr|E1SZF9) tRNA pseudouridine synthase A OS=Thermo... 159 7e-37
E1FFI5_9THEO (tr|E1FFI5) tRNA pseudouridine synthase A OS=Thermo... 159 7e-37
C7IUU4_THEET (tr|C7IUU4) tRNA pseudouridine synthase A OS=Thermo... 159 7e-37
C2Q680_BACCE (tr|C2Q680) tRNA pseudouridine synthase A OS=Bacill... 159 8e-37
C3AYY4_BACMY (tr|C3AYY4) tRNA pseudouridine synthase A OS=Bacill... 159 8e-37
C3AH29_BACMY (tr|C3AH29) tRNA pseudouridine synthase A OS=Bacill... 159 8e-37
I8AF97_9BACI (tr|I8AF97) tRNA pseudouridine synthase A OS=Bacill... 159 8e-37
A7GKW8_BACCN (tr|A7GKW8) tRNA pseudouridine synthase A OS=Bacill... 159 8e-37
C2P961_BACCE (tr|C2P961) tRNA pseudouridine synthase A OS=Bacill... 159 9e-37
D7DGM5_CHLTL (tr|D7DGM5) tRNA pseudouridine synthase A OS=Chlamy... 159 9e-37
D7DDT6_CHLTD (tr|D7DDT6) tRNA pseudouridine synthase A OS=Chlamy... 159 9e-37
D6YIE4_CHLT0 (tr|D6YIE4) tRNA pseudouridine synthase A OS=Chlamy... 159 9e-37
L0U928_CHLTH (tr|L0U928) tRNA pseudouridine synthase A OS=Chlamy... 159 9e-37
L0TYV5_CHLTH (tr|L0TYV5) tRNA pseudouridine synthase A OS=Chlamy... 159 9e-37
L0TWE2_CHLTH (tr|L0TWE2) tRNA pseudouridine synthase A OS=Chlamy... 159 9e-37
L0TQL0_CHLTH (tr|L0TQL0) tRNA pseudouridine synthase A OS=Chlamy... 159 9e-37
R5PU58_9CLOT (tr|R5PU58) tRNA pseudouridine synthase A OS=Clostr... 159 1e-36
L8PSZ9_BACIU (tr|L8PSZ9) tRNA pseudouridine synthase A OS=Bacill... 159 1e-36
F0T355_CHLP6 (tr|F0T355) tRNA pseudouridine synthase A OS=Chlamy... 159 1e-36
E5AH27_CHLP1 (tr|E5AH27) tRNA pseudouridine synthase A OS=Chlamy... 159 1e-36
M1J2D8_CHLPS (tr|M1J2D8) tRNA pseudouridine synthase A OS=Chlamy... 159 1e-36
K4UMB4_CHLPS (tr|K4UMB4) tRNA pseudouridine synthase A OS=Chlamy... 159 1e-36
J9XI36_CHLPS (tr|J9XI36) tRNA pseudouridine synthase A OS=Chlamy... 159 1e-36
J9X8F6_CHLPS (tr|J9X8F6) tRNA pseudouridine synthase A OS=Chlamy... 159 1e-36
J9X3U0_CHLPS (tr|J9X3U0) tRNA pseudouridine synthase A OS=Chlamy... 159 1e-36
J9WXW8_CHLPS (tr|J9WXW8) tRNA pseudouridine synthase A OS=Chlamy... 159 1e-36
J9WW65_CHLPS (tr|J9WW65) tRNA pseudouridine synthase A OS=Chlamy... 159 1e-36
J9WUR6_CHLPS (tr|J9WUR6) tRNA pseudouridine synthase A OS=Chlamy... 159 1e-36
F6FF75_CHLPS (tr|F6FF75) tRNA pseudouridine synthase A OS=Chlamy... 159 1e-36
F6F9X9_CHLPS (tr|F6F9X9) tRNA pseudouridine synthase A OS=Chlamy... 159 1e-36
F6F7G3_CHLPS (tr|F6F7G3) tRNA pseudouridine synthase A OS=Chlamy... 159 1e-36
F6F4S8_CHLPS (tr|F6F4S8) tRNA pseudouridine synthase A OS=Chlamy... 159 1e-36
F3NUK1_CHLPS (tr|F3NUK1) tRNA pseudouridine synthase A OS=Chlamy... 159 1e-36
E1NVY4_9LACO (tr|E1NVY4) tRNA pseudouridine synthase A OS=Lactob... 159 1e-36
I2HY00_9BACI (tr|I2HY00) tRNA pseudouridine synthase A OS=Bacill... 159 1e-36
R5TN58_9FIRM (tr|R5TN58) tRNA pseudouridine synthase A 1 OS=Rumi... 159 1e-36
J9XAM5_CHLPS (tr|J9XAM5) tRNA pseudouridine synthase A OS=Chlamy... 159 1e-36
B7HJI9_BACC4 (tr|B7HJI9) tRNA pseudouridine synthase A OS=Bacill... 159 1e-36
M4L2U9_BACTK (tr|M4L2U9) TruA OS=Bacillus thuringiensis serovar ... 159 1e-36
C3EEY0_BACTK (tr|C3EEY0) tRNA pseudouridine synthase A OS=Bacill... 159 1e-36
C2WGK5_BACCE (tr|C2WGK5) tRNA pseudouridine synthase A OS=Bacill... 159 1e-36
C2R2A6_BACCE (tr|C2R2A6) tRNA pseudouridine synthase A OS=Bacill... 159 1e-36
C2NT19_BACCE (tr|C2NT19) tRNA pseudouridine synthase A OS=Bacill... 159 1e-36
R8UNN3_BACCE (tr|R8UNN3) tRNA pseudouridine synthase A 1 OS=Baci... 159 1e-36
R8RU11_BACCE (tr|R8RU11) tRNA pseudouridine synthase A 1 OS=Baci... 159 1e-36
R8R3E2_BACCE (tr|R8R3E2) tRNA pseudouridine synthase A 1 OS=Baci... 159 1e-36
R8QWG4_BACCE (tr|R8QWG4) tRNA pseudouridine synthase A 1 OS=Baci... 159 1e-36
R8NKJ4_BACCE (tr|R8NKJ4) tRNA pseudouridine synthase A 1 OS=Baci... 159 1e-36
R8E793_BACCE (tr|R8E793) tRNA pseudouridine synthase A 1 OS=Baci... 159 1e-36
J9BKP2_BACCE (tr|J9BKP2) tRNA pseudouridine synthase A OS=Bacill... 159 1e-36
J8A8H5_BACCE (tr|J8A8H5) tRNA pseudouridine synthase A OS=Bacill... 159 1e-36
J7Y8P4_BACCE (tr|J7Y8P4) tRNA pseudouridine synthase A OS=Bacill... 159 1e-36
J7WQU0_BACCE (tr|J7WQU0) tRNA pseudouridine synthase A OS=Bacill... 159 1e-36
J7W7Q7_BACCE (tr|J7W7Q7) tRNA pseudouridine synthase A OS=Bacill... 159 1e-36
G9QG73_9BACI (tr|G9QG73) tRNA pseudouridine synthase A OS=Bacill... 159 1e-36
E6LVC0_9LACO (tr|E6LVC0) tRNA pseudouridine synthase A OS=Lactob... 159 1e-36
E3C2W5_9LACO (tr|E3C2W5) tRNA pseudouridine synthase A OS=Lactob... 159 1e-36
E3BZZ1_9LACO (tr|E3BZZ1) tRNA pseudouridine synthase A OS=Lactob... 159 1e-36
E1NU14_9LACO (tr|E1NU14) tRNA pseudouridine synthase A OS=Lactob... 159 1e-36
E1NP81_9LACO (tr|E1NP81) tRNA pseudouridine synthase A OS=Lactob... 159 1e-36
E1NJE1_9LACO (tr|E1NJE1) tRNA pseudouridine synthase A OS=Lactob... 159 1e-36
E1NFQ4_9LACO (tr|E1NFQ4) tRNA pseudouridine synthase A OS=Lactob... 159 1e-36
C8PBG3_9LACO (tr|C8PBG3) tRNA pseudouridine synthase A OS=Lactob... 159 1e-36
C2WXW8_BACCE (tr|C2WXW8) tRNA pseudouridine synthase A OS=Bacill... 159 1e-36
R6FYD9_9FIRM (tr|R6FYD9) tRNA pseudouridine synthase A OS=Eubact... 159 1e-36
R8MBI7_BACCE (tr|R8MBI7) tRNA pseudouridine synthase A 1 OS=Baci... 159 1e-36
F0GRN4_9LACO (tr|F0GRN4) tRNA pseudouridine synthase A OS=Lactob... 158 1e-36
F7JTZ8_9FIRM (tr|F7JTZ8) tRNA pseudouridine synthase A OS=Lachno... 158 1e-36
A7B638_RUMGN (tr|A7B638) tRNA pseudouridine synthase A OS=Rumino... 158 1e-36
Q00RV7_OSTTA (tr|Q00RV7) TRUA1_PARUW tRNA pseudouridine synthase... 158 1e-36
R5BUL1_9FIRM (tr|R5BUL1) tRNA pseudouridine synthase A OS=Blauti... 158 1e-36
C0CK95_9FIRM (tr|C0CK95) tRNA pseudouridine synthase A OS=Blauti... 158 1e-36
R5R4Q0_9FIRM (tr|R5R4Q0) tRNA pseudouridine synthase A 2 OS=Firm... 158 2e-36
D7ARP5_THEM3 (tr|D7ARP5) tRNA pseudouridine synthase A OS=Thermo... 158 2e-36
D5XAB7_THEPJ (tr|D5XAB7) tRNA pseudouridine synthase A OS=Thermi... 158 2e-36
J7ZQ78_BACCE (tr|J7ZQ78) tRNA pseudouridine synthase A OS=Bacill... 158 2e-36
C2W3Q0_BACCE (tr|C2W3Q0) tRNA pseudouridine synthase A OS=Bacill... 158 2e-36
I0UNA3_BACLI (tr|I0UNA3) tRNA pseudouridine synthase A OS=Bacill... 158 2e-36
G3YYF8_9LACO (tr|G3YYF8) tRNA pseudouridine synthase A OS=Lactob... 158 2e-36
F3M090_9LACO (tr|F3M090) tRNA pseudouridine synthase A OS=Lactob... 158 2e-36
F0GP82_9LACO (tr|F0GP82) tRNA pseudouridine synthase A OS=Lactob... 158 2e-36
E5WBS1_9BACI (tr|E5WBS1) tRNA pseudouridine synthase A OS=Bacill... 158 2e-36
E3BWW9_9LACO (tr|E3BWW9) tRNA pseudouridine synthase A OS=Lactob... 158 2e-36
E3BRP3_9LACO (tr|E3BRP3) tRNA pseudouridine synthase A OS=Lactob... 158 2e-36
J8ZVZ3_BACCE (tr|J8ZVZ3) tRNA pseudouridine synthase A OS=Bacill... 158 2e-36
E3GGZ0_EUBLK (tr|E3GGZ0) tRNA pseudouridine synthase A OS=Eubact... 158 2e-36
A7GK52_BACCN (tr|A7GK52) tRNA pseudouridine synthase A OS=Bacill... 158 2e-36
R8NRX8_BACCE (tr|R8NRX8) tRNA pseudouridine synthase A 1 OS=Baci... 158 2e-36
R8MID8_BACCE (tr|R8MID8) tRNA pseudouridine synthase A 1 OS=Baci... 158 2e-36
J9CH41_BACCE (tr|J9CH41) tRNA pseudouridine synthase A OS=Bacill... 158 2e-36
J8ZVK7_BACCE (tr|J8ZVK7) tRNA pseudouridine synthase A OS=Bacill... 158 2e-36
J8Z2D2_BACCE (tr|J8Z2D2) tRNA pseudouridine synthase A OS=Bacill... 158 2e-36
J8Q9A2_BACCE (tr|J8Q9A2) tRNA pseudouridine synthase A OS=Bacill... 158 2e-36
J8K022_BACCE (tr|J8K022) tRNA pseudouridine synthase A OS=Bacill... 158 2e-36
J8JYY9_BACCE (tr|J8JYY9) tRNA pseudouridine synthase A OS=Bacill... 158 2e-36
J8ED18_BACCE (tr|J8ED18) tRNA pseudouridine synthase A OS=Bacill... 158 2e-36
J8DD34_BACCE (tr|J8DD34) tRNA pseudouridine synthase A OS=Bacill... 158 2e-36
J8A4P2_BACCE (tr|J8A4P2) tRNA pseudouridine synthase A OS=Bacill... 158 2e-36
J8B7I2_BACCE (tr|J8B7I2) tRNA pseudouridine synthase A OS=Bacill... 158 2e-36
D3T4M2_THEIA (tr|D3T4M2) tRNA pseudouridine synthase A OS=Thermo... 158 2e-36
C2V623_BACCE (tr|C2V623) tRNA pseudouridine synthase A OS=Bacill... 158 2e-36
C2UPQ3_BACCE (tr|C2UPQ3) tRNA pseudouridine synthase A OS=Bacill... 158 2e-36
C2TRJ4_BACCE (tr|C2TRJ4) tRNA pseudouridine synthase A OS=Bacill... 158 2e-36
E6UT09_CLOTL (tr|E6UT09) tRNA pseudouridine synthase A OS=Clostr... 158 2e-36
J9XKZ0_CHLPS (tr|J9XKZ0) tRNA pseudouridine synthase A OS=Chlamy... 158 2e-36
H8ERP8_CLOTM (tr|H8ERP8) tRNA pseudouridine synthase A OS=Clostr... 158 2e-36
H8EG60_CLOTM (tr|H8EG60) tRNA pseudouridine synthase A OS=Clostr... 158 2e-36
D1NQZ9_CLOTM (tr|D1NQZ9) tRNA pseudouridine synthase A OS=Clostr... 158 2e-36
C7HHF2_CLOTM (tr|C7HHF2) tRNA pseudouridine synthase A OS=Clostr... 158 2e-36
I3E0G6_BACMT (tr|I3E0G6) tRNA pseudouridine synthase A OS=Bacill... 157 3e-36
C3BFD0_9BACI (tr|C3BFD0) tRNA pseudouridine synthase A OS=Bacill... 157 3e-36
C4ZI89_EUBR3 (tr|C4ZI89) tRNA pseudouridine synthase A OS=Eubact... 157 3e-36
R8NQQ7_BACCE (tr|R8NQQ7) tRNA pseudouridine synthase A 1 OS=Baci... 157 3e-36
R8KVI3_BACCE (tr|R8KVI3) tRNA pseudouridine synthase A 1 OS=Baci... 157 3e-36
R8F2Z4_BACCE (tr|R8F2Z4) tRNA pseudouridine synthase A 1 OS=Baci... 157 3e-36
R8CJN2_BACCE (tr|R8CJN2) tRNA pseudouridine synthase A 1 OS=Baci... 157 3e-36
J9BJ13_BACCE (tr|J9BJ13) tRNA pseudouridine synthase A OS=Bacill... 157 3e-36
J8NAL8_BACCE (tr|J8NAL8) tRNA pseudouridine synthase A OS=Bacill... 157 3e-36
J8LG38_BACCE (tr|J8LG38) tRNA pseudouridine synthase A OS=Bacill... 157 3e-36
J8GVF1_BACCE (tr|J8GVF1) tRNA pseudouridine synthase A OS=Bacill... 157 3e-36
J8D022_BACCE (tr|J8D022) tRNA pseudouridine synthase A OS=Bacill... 157 3e-36
J8CTX6_BACCE (tr|J8CTX6) tRNA pseudouridine synthase A OS=Bacill... 157 3e-36
J8C4Q7_BACCE (tr|J8C4Q7) tRNA pseudouridine synthase A OS=Bacill... 157 3e-36
J7YP59_BACCE (tr|J7YP59) tRNA pseudouridine synthase A OS=Bacill... 157 3e-36
J9C7J0_BACCE (tr|J9C7J0) tRNA pseudouridine synthase A OS=Bacill... 157 3e-36
J8QAQ2_BACCE (tr|J8QAQ2) tRNA pseudouridine synthase A OS=Bacill... 157 3e-36
D6E3D2_9FIRM (tr|D6E3D2) tRNA pseudouridine synthase A OS=Eubact... 157 3e-36
D4JHV4_9FIRM (tr|D4JHV4) tRNA pseudouridine synthase A OS=Eubact... 157 3e-36
D6YMT1_CHLT1 (tr|D6YMT1) tRNA pseudouridine synthase A OS=Chlamy... 157 3e-36
D6YDN3_CHLT5 (tr|D6YDN3) tRNA pseudouridine synthase A OS=Chlamy... 157 3e-36
D3UUT1_CHLTS (tr|D3UUT1) tRNA pseudouridine synthase A OS=Chlamy... 157 3e-36
M5DDY6_CHLTH (tr|M5DDY6) tRNA pseudouridine synthase A OS=Chlamy... 157 3e-36
M5DAK3_CHLTH (tr|M5DAK3) tRNA pseudouridine synthase A OS=Chlamy... 157 3e-36
L0UGM2_CHLTH (tr|L0UGM2) tRNA pseudouridine synthase A OS=Chlamy... 157 3e-36
L0U9R2_CHLTH (tr|L0U9R2) tRNA pseudouridine synthase A OS=Chlamy... 157 3e-36
L0U7M1_CHLTH (tr|L0U7M1) tRNA pseudouridine synthase A OS=Chlamy... 157 3e-36
L0U4L1_CHLTH (tr|L0U4L1) tRNA pseudouridine synthase A OS=Chlamy... 157 3e-36
L0TVQ8_CHLTH (tr|L0TVQ8) tRNA pseudouridine synthase A OS=Chlamy... 157 3e-36
H8WNS1_CHLTH (tr|H8WNS1) tRNA pseudouridine synthase A OS=Chlamy... 157 3e-36
H8WKB4_CHLTH (tr|H8WKB4) tRNA pseudouridine synthase A OS=Chlamy... 157 3e-36
H8WIQ1_CHLTH (tr|H8WIQ1) tRNA pseudouridine synthase A OS=Chlamy... 157 3e-36
C3A069_BACMY (tr|C3A069) tRNA pseudouridine synthase A OS=Bacill... 157 3e-36
C2SE95_BACCE (tr|C2SE95) tRNA pseudouridine synthase A OS=Bacill... 157 3e-36
C2PQ12_BACCE (tr|C2PQ12) tRNA pseudouridine synthase A OS=Bacill... 157 3e-36
R5KUF2_9CLOT (tr|R5KUF2) tRNA pseudouridine synthase A OS=Clostr... 157 3e-36
C3GVB6_BACTU (tr|C3GVB6) tRNA pseudouridine synthase A OS=Bacill... 157 4e-36
R6TJE6_9FIRM (tr|R6TJE6) tRNA pseudouridine synthase A OS=Eubact... 157 4e-36
A9VPA9_BACWK (tr|A9VPA9) tRNA pseudouridine synthase A OS=Bacill... 157 4e-36
E8T160_GEOS2 (tr|E8T160) tRNA pseudouridine synthase A OS=Geobac... 157 4e-36
C9RYI7_GEOSY (tr|C9RYI7) tRNA pseudouridine synthase A OS=Geobac... 157 4e-36
J8MQC0_BACCE (tr|J8MQC0) tRNA pseudouridine synthase A OS=Bacill... 157 4e-36
J8HH15_BACCE (tr|J8HH15) tRNA pseudouridine synthase A OS=Bacill... 157 4e-36
I3VU66_THESW (tr|I3VU66) tRNA pseudouridine synthase A OS=Thermo... 157 4e-36
M1PE57_BACTU (tr|M1PE57) tRNA pseudouridine synthase A OS=Bacill... 157 4e-36
K4LSE2_BACTU (tr|K4LSE2) tRNA pseudouridine synthase A OS=Bacill... 157 4e-36
R8KPL3_BACCE (tr|R8KPL3) tRNA pseudouridine synthase A 1 OS=Baci... 157 4e-36
R8GUK7_BACCE (tr|R8GUK7) tRNA pseudouridine synthase A 1 OS=Baci... 157 4e-36
R8G479_BACCE (tr|R8G479) tRNA pseudouridine synthase A 1 OS=Baci... 157 4e-36
R8FDJ8_BACCE (tr|R8FDJ8) tRNA pseudouridine synthase A 1 OS=Baci... 157 4e-36
R8DGY6_BACCE (tr|R8DGY6) tRNA pseudouridine synthase A 1 OS=Baci... 157 4e-36
N1LRL7_9BACI (tr|N1LRL7) tRNA pseudouridine synthase A OS=Bacill... 157 4e-36
R8XQY3_BACCE (tr|R8XQY3) tRNA pseudouridine synthase A 1 OS=Baci... 157 4e-36
R8SXH4_BACCE (tr|R8SXH4) tRNA pseudouridine synthase A 1 OS=Baci... 157 4e-36
R8I7S1_BACCE (tr|R8I7S1) tRNA pseudouridine synthase A 1 OS=Baci... 157 4e-36
R8BZ00_BACCE (tr|R8BZ00) tRNA pseudouridine synthase A 1 OS=Baci... 157 4e-36
J8FHY8_BACCE (tr|J8FHY8) tRNA pseudouridine synthase A OS=Bacill... 157 4e-36
J7T0J0_BACCE (tr|J7T0J0) tRNA pseudouridine synthase A OS=Bacill... 157 4e-36
B7IT51_BACC2 (tr|B7IT51) tRNA pseudouridine synthase A OS=Bacill... 157 5e-36
K0FW72_BACTU (tr|K0FW72) tRNA pseudouridine synthase A OS=Bacill... 157 5e-36
Q3EK29_BACTI (tr|Q3EK29) tRNA pseudouridine synthase A OS=Bacill... 157 5e-36
R9CCN3_9BACI (tr|R9CCN3) tRNA pseudouridine synthase A OS=Bacill... 157 5e-36
F2H0R2_BACTU (tr|F2H0R2) tRNA pseudouridine synthase A OS=Bacill... 157 5e-36
C3FEC6_BACTB (tr|C3FEC6) tRNA pseudouridine synthase A OS=Bacill... 157 5e-36
C3CVU5_BACTU (tr|C3CVU5) tRNA pseudouridine synthase A OS=Bacill... 157 5e-36
C3CCU7_BACTU (tr|C3CCU7) tRNA pseudouridine synthase A OS=Bacill... 157 5e-36
J3UQX1_BACTU (tr|J3UQX1) tRNA pseudouridine synthase A OS=Bacill... 157 5e-36
J3UNC0_BACTU (tr|J3UNC0) tRNA pseudouridine synthase A OS=Bacill... 157 5e-36
C3IDL9_BACTU (tr|C3IDL9) tRNA pseudouridine synthase A OS=Bacill... 157 5e-36
C3DDX2_BACTS (tr|C3DDX2) tRNA pseudouridine synthase A OS=Bacill... 157 5e-36
G5IL39_9CLOT (tr|G5IL39) tRNA pseudouridine synthase OS=Clostrid... 157 5e-36
R6QXM0_9FIRM (tr|R6QXM0) tRNA pseudouridine synthase A 1 OS=Buty... 157 5e-36
D6YYF6_CHLT9 (tr|D6YYF6) tRNA pseudouridine synthase A OS=Chlamy... 157 5e-36
D6YL19_CHLTG (tr|D6YL19) tRNA pseudouridine synthase A OS=Chlamy... 157 5e-36
D6YFS7_CHLT7 (tr|D6YFS7) tRNA pseudouridine synthase A OS=Chlamy... 157 5e-36
J8L8V0_BACCE (tr|J8L8V0) tRNA pseudouridine synthase A OS=Bacill... 157 5e-36
J8HJN5_BACCE (tr|J8HJN5) tRNA pseudouridine synthase A OS=Bacill... 157 5e-36
R8GYR3_BACCE (tr|R8GYR3) tRNA pseudouridine synthase A 1 OS=Baci... 157 5e-36
J8XXG9_BACCE (tr|J8XXG9) tRNA pseudouridine synthase A OS=Bacill... 157 5e-36
J8A2C9_BACCE (tr|J8A2C9) tRNA pseudouridine synthase A OS=Bacill... 157 5e-36
B9Y957_9FIRM (tr|B9Y957) tRNA pseudouridine synthase A OS=Holdem... 157 5e-36
G4NNL1_CHLT4 (tr|G4NNL1) tRNA pseudouridine synthase A OS=Chlamy... 156 6e-36
C4PRE2_CHLTJ (tr|C4PRE2) tRNA pseudouridine synthase A OS=Chlamy... 156 6e-36
C4PMX3_CHLTZ (tr|C4PMX3) tRNA pseudouridine synthase A OS=Chlamy... 156 6e-36
L0UHB9_CHLTH (tr|L0UHB9) tRNA pseudouridine synthase A OS=Chlamy... 156 6e-36
L0UDI4_CHLTH (tr|L0UDI4) tRNA pseudouridine synthase A OS=Chlamy... 156 6e-36
L0TMX7_CHLTH (tr|L0TMX7) tRNA pseudouridine synthase A OS=Chlamy... 156 6e-36
L0TJE6_CHLTH (tr|L0TJE6) tRNA pseudouridine synthase A OS=Chlamy... 156 6e-36
L0TIL2_CHLTH (tr|L0TIL2) tRNA pseudouridine synthase A OS=Chlamy... 156 6e-36
R5KUL2_9FIRM (tr|R5KUL2) tRNA pseudouridine synthase A OS=Eubact... 156 6e-36
F1ZVV1_THEET (tr|F1ZVV1) tRNA pseudouridine synthase A OS=Thermo... 156 6e-36
C2YKU5_BACCE (tr|C2YKU5) tRNA pseudouridine synthase A OS=Bacill... 156 6e-36
D5TKE5_BACT1 (tr|D5TKE5) tRNA pseudouridine synthase A OS=Bacill... 156 6e-36
R8CG36_BACCE (tr|R8CG36) tRNA pseudouridine synthase A 1 OS=Baci... 156 6e-36
C3DXQ3_BACTU (tr|C3DXQ3) tRNA pseudouridine synthase A OS=Bacill... 156 6e-36
C2Y4T4_BACCE (tr|C2Y4T4) tRNA pseudouridine synthase A OS=Bacill... 156 6e-36
C2SV45_BACCE (tr|C2SV45) tRNA pseudouridine synthase A OS=Bacill... 156 6e-36
C2RHA0_BACCE (tr|C2RHA0) tRNA pseudouridine synthase A OS=Bacill... 156 6e-36
C2MV22_BACCE (tr|C2MV22) tRNA pseudouridine synthase A OS=Bacill... 156 6e-36
B5UVN6_BACCE (tr|B5UVN6) tRNA pseudouridine synthase A OS=Bacill... 156 6e-36
D4JJH3_9FIRM (tr|D4JJH3) tRNA pseudouridine synthase A OS=Eubact... 156 7e-36
C2XN35_BACCE (tr|C2XN35) tRNA pseudouridine synthase A OS=Bacill... 156 7e-36
R6H4K3_9CLOT (tr|R6H4K3) tRNA pseudouridine synthase A 2 OS=Clos... 156 7e-36
D9SX66_CLOC7 (tr|D9SX66) tRNA pseudouridine synthase A OS=Clostr... 156 7e-36
R8GG59_BACCE (tr|R8GG59) tRNA pseudouridine synthase A 1 OS=Baci... 156 8e-36
J8N128_BACCE (tr|J8N128) tRNA pseudouridine synthase A OS=Bacill... 156 8e-36
J8LDV4_BACCE (tr|J8LDV4) tRNA pseudouridine synthase A OS=Bacill... 156 8e-36
J8KYC8_BACCE (tr|J8KYC8) tRNA pseudouridine synthase A OS=Bacill... 156 8e-36
J8HLU0_BACCE (tr|J8HLU0) tRNA pseudouridine synthase A OS=Bacill... 156 8e-36
J8FK79_BACCE (tr|J8FK79) tRNA pseudouridine synthase A OS=Bacill... 156 8e-36
R8TB82_BACCE (tr|R8TB82) tRNA pseudouridine synthase A 1 OS=Baci... 156 8e-36
R5D670_9FIRM (tr|R5D670) tRNA pseudouridine synthase A 1 OS=Dore... 156 8e-36
R7F8E9_9CLOT (tr|R7F8E9) tRNA pseudouridine synthase A OS=Clostr... 156 8e-36
C2X611_BACCE (tr|C2X611) tRNA pseudouridine synthase A OS=Bacill... 156 8e-36
R8UD96_BACCE (tr|R8UD96) tRNA pseudouridine synthase A 1 OS=Baci... 156 9e-36
R8PUV5_BACCE (tr|R8PUV5) tRNA pseudouridine synthase A 1 OS=Baci... 156 9e-36
F6CKF3_DESK7 (tr|F6CKF3) tRNA pseudouridine synthase A OS=Desulf... 155 9e-36
J8PCA4_BACCE (tr|J8PCA4) tRNA pseudouridine synthase A OS=Bacill... 155 1e-35
J7T152_BACCE (tr|J7T152) tRNA pseudouridine synthase A OS=Bacill... 155 1e-35
A9KJG1_CLOPH (tr|A9KJG1) tRNA pseudouridine synthase A OS=Clostr... 155 1e-35
R6QM87_9CLOT (tr|R6QM87) tRNA pseudouridine synthase A 3 OS=Clos... 155 1e-35
B6FVA8_9CLOT (tr|B6FVA8) tRNA pseudouridine synthase A OS=Clostr... 155 1e-35
G2MVS0_9THEO (tr|G2MVS0) tRNA pseudouridine synthase A OS=Thermo... 155 1e-35
F0Z4Z9_9CLOT (tr|F0Z4Z9) tRNA pseudouridine synthase A OS=Clostr... 155 1e-35
A5Z573_9FIRM (tr|A5Z573) tRNA pseudouridine synthase A OS=Eubact... 155 1e-35
C2ZIM6_BACCE (tr|C2ZIM6) tRNA pseudouridine synthase A OS=Bacill... 155 1e-35
C2Z212_BACCE (tr|C2Z212) tRNA pseudouridine synthase A OS=Bacill... 155 1e-35
B3ZD80_BACCE (tr|B3ZD80) tRNA pseudouridine synthase A OS=Bacill... 155 1e-35
C2YLL6_BACCE (tr|C2YLL6) tRNA pseudouridine synthase A OS=Bacill... 155 1e-35
E6UBA0_RUMA7 (tr|E6UBA0) tRNA pseudouridine synthase A OS=Rumino... 155 1e-35
R4JVM6_LACAI (tr|R4JVM6) tRNA pseudouridine synthase A OS=Lactob... 155 1e-35
C2HMC8_LACAI (tr|C2HMC8) tRNA pseudouridine synthase A OS=Lactob... 155 1e-35
C2QM66_BACCE (tr|C2QM66) tRNA pseudouridine synthase A OS=Bacill... 155 1e-35
R8PU94_BACCE (tr|R8PU94) tRNA pseudouridine synthase A 1 OS=Baci... 155 1e-35
R8I8K8_BACCE (tr|R8I8K8) tRNA pseudouridine synthase A 1 OS=Baci... 155 1e-35
J8PZ47_BACCE (tr|J8PZ47) tRNA pseudouridine synthase A OS=Bacill... 155 1e-35
J7UCX1_BACCE (tr|J7UCX1) tRNA pseudouridine synthase A OS=Bacill... 155 1e-35
C3BER2_9BACI (tr|C3BER2) tRNA pseudouridine synthase A OS=Bacill... 155 1e-35
C3AY71_BACMY (tr|C3AY71) tRNA pseudouridine synthase A OS=Bacill... 155 1e-35
B4BSP2_9BACI (tr|B4BSP2) tRNA pseudouridine synthase A OS=Geobac... 155 1e-35
R5EE15_9CLOT (tr|R5EE15) tRNA pseudouridine synthase A OS=Clostr... 155 1e-35
A6TWE8_ALKMQ (tr|A6TWE8) tRNA pseudouridine synthase A OS=Alkali... 155 1e-35
M4HA37_BACCE (tr|M4HA37) tRNA pseudouridine synthase A OS=Bacill... 155 2e-35
H4GIT0_9LACO (tr|H4GIT0) tRNA pseudouridine synthase A OS=Lactob... 155 2e-35
C2PQU7_BACCE (tr|C2PQU7) tRNA pseudouridine synthase A OS=Bacill... 155 2e-35
C3FX74_BACTU (tr|C3FX74) tRNA pseudouridine synthase A OS=Bacill... 155 2e-35
F5SIE8_9BACL (tr|F5SIE8) tRNA pseudouridine synthase A OS=Desmos... 155 2e-35
C3HUI1_BACTU (tr|C3HUI1) tRNA pseudouridine synthase A OS=Bacill... 155 2e-35
F9YEL5_CHLTC (tr|F9YEL5) tRNA pseudouridine synthase A OS=Chlamy... 155 2e-35
M9UFL3_CHLTH (tr|M9UFL3) tRNA pseudouridine synthase A OS=Chlamy... 155 2e-35
M9UFE8_CHLTH (tr|M9UFE8) tRNA pseudouridine synthase A OS=Chlamy... 155 2e-35
L0VSI3_CHLTH (tr|L0VSI3) tRNA pseudouridine synthase A OS=Chlamy... 155 2e-35
L0VQX5_CHLTH (tr|L0VQX5) tRNA pseudouridine synthase A OS=Chlamy... 155 2e-35
L0VND6_CHLTH (tr|L0VND6) tRNA pseudouridine synthase A OS=Chlamy... 155 2e-35
L0VH35_CHLTH (tr|L0VH35) tRNA pseudouridine synthase A OS=Chlamy... 155 2e-35
L0VEH2_CHLTH (tr|L0VEH2) tRNA pseudouridine synthase A OS=Chlamy... 155 2e-35
L0VBW2_CHLTH (tr|L0VBW2) tRNA pseudouridine synthase A OS=Chlamy... 155 2e-35
L0V9E6_CHLTH (tr|L0V9E6) tRNA pseudouridine synthase A OS=Chlamy... 155 2e-35
L0V6X0_CHLTH (tr|L0V6X0) tRNA pseudouridine synthase A OS=Chlamy... 155 2e-35
L0V581_CHLTH (tr|L0V581) tRNA pseudouridine synthase A OS=Chlamy... 155 2e-35
L0V3Y4_CHLTH (tr|L0V3Y4) tRNA pseudouridine synthase A OS=Chlamy... 155 2e-35
L0V336_CHLTH (tr|L0V336) tRNA pseudouridine synthase A OS=Chlamy... 155 2e-35
L0UZ24_CHLTH (tr|L0UZ24) tRNA pseudouridine synthase A OS=Chlamy... 155 2e-35
L0UY92_CHLTH (tr|L0UY92) tRNA pseudouridine synthase A OS=Chlamy... 155 2e-35
L0UV10_CHLTH (tr|L0UV10) tRNA pseudouridine synthase A OS=Chlamy... 155 2e-35
L0USH2_CHLTH (tr|L0USH2) tRNA pseudouridine synthase A OS=Chlamy... 155 2e-35
L0UNQ3_CHLTH (tr|L0UNQ3) tRNA pseudouridine synthase A OS=Chlamy... 155 2e-35
L0UJ80_CHLTH (tr|L0UJ80) tRNA pseudouridine synthase A OS=Chlamy... 155 2e-35
L0TR56_CHLTH (tr|L0TR56) tRNA pseudouridine synthase A OS=Chlamy... 155 2e-35
C4Z854_EUBR3 (tr|C4Z854) tRNA pseudouridine synthase A OS=Eubact... 155 2e-35
R6TX77_9FIRM (tr|R6TX77) tRNA pseudouridine synthase A 1 OS=Euba... 155 2e-35
Q4MH31_BACCE (tr|Q4MH31) tRNA pseudouridine synthase A OS=Bacill... 155 2e-35
C3BWG4_BACTU (tr|C3BWG4) tRNA pseudouridine synthase A OS=Bacill... 155 2e-35
J9DNL7_9THEM (tr|J9DNL7) tRNA pseudouridine synthase A OS=Thermo... 155 2e-35
B9ZSE2_BACAN (tr|B9ZSE2) tRNA pseudouridine synthase A OS=Bacill... 154 2e-35
J8EL92_BACCE (tr|J8EL92) tRNA pseudouridine synthase A OS=Bacill... 154 2e-35
B3ZST2_BACCE (tr|B3ZST2) tRNA pseudouridine synthase A OS=Bacill... 154 2e-35
B0QAF1_BACAN (tr|B0QAF1) tRNA pseudouridine synthase A OS=Bacill... 154 2e-35
B0AYP2_BACAN (tr|B0AYP2) tRNA pseudouridine synthase A OS=Bacill... 154 2e-35
R8GZY5_BACCE (tr|R8GZY5) tRNA pseudouridine synthase A 2 OS=Baci... 154 2e-35
R8CQE7_BACCE (tr|R8CQE7) tRNA pseudouridine synthase A 2 OS=Baci... 154 2e-35
J8XZK3_BACCE (tr|J8XZK3) tRNA pseudouridine synthase A OS=Bacill... 154 2e-35
D8GXK6_BACAI (tr|D8GXK6) tRNA pseudouridine synthase A OS=Bacill... 154 2e-35
C3P9T7_BACAA (tr|C3P9T7) tRNA pseudouridine synthase A OS=Bacill... 154 2e-35
C3LJX6_BACAC (tr|C3LJX6) tRNA pseudouridine synthase A OS=Bacill... 154 2e-35
C1ET71_BACC3 (tr|C1ET71) tRNA pseudouridine synthase A OS=Bacill... 154 2e-35
B9IZM6_BACCQ (tr|B9IZM6) tRNA pseudouridine synthase A OS=Bacill... 154 2e-35
B7JKF2_BACC0 (tr|B7JKF2) tRNA pseudouridine synthase A OS=Bacill... 154 2e-35
R6XHT4_9CLOT (tr|R6XHT4) tRNA pseudouridine synthase A OS=Clostr... 154 2e-35
J8FNS5_BACCE (tr|J8FNS5) tRNA pseudouridine synthase A OS=Bacill... 154 2e-35
J8FMY2_BACCE (tr|J8FMY2) tRNA pseudouridine synthase A OS=Bacill... 154 2e-35
J6P073_BACAN (tr|J6P073) tRNA pseudouridine synthase A OS=Bacill... 154 2e-35
J5NHF2_BACAN (tr|J5NHF2) tRNA pseudouridine synthase A OS=Bacill... 154 2e-35
C3HCI6_BACTU (tr|C3HCI6) tRNA pseudouridine synthase A OS=Bacill... 154 2e-35
C3GD14_BACTU (tr|C3GD14) tRNA pseudouridine synthase A OS=Bacill... 154 2e-35
C3EVT4_BACTU (tr|C3EVT4) tRNA pseudouridine synthase A OS=Bacill... 154 2e-35
C2VMU8_BACCE (tr|C2VMU8) tRNA pseudouridine synthase A OS=Bacill... 154 2e-35
C2TAG6_BACCE (tr|C2TAG6) tRNA pseudouridine synthase A OS=Bacill... 154 2e-35
C2NBT2_BACCE (tr|C2NBT2) tRNA pseudouridine synthase A OS=Bacill... 154 2e-35
B3YZ60_BACCE (tr|B3YZ60) tRNA pseudouridine synthase A OS=Bacill... 154 2e-35
B3J7E0_BACAN (tr|B3J7E0) tRNA pseudouridine synthase A OS=Bacill... 154 2e-35
B1UY66_BACAN (tr|B1UY66) tRNA pseudouridine synthase A OS=Bacill... 154 2e-35
B1GQL6_BACAN (tr|B1GQL6) tRNA pseudouridine synthase A OS=Bacill... 154 2e-35
R8JKW8_BACCE (tr|R8JKW8) tRNA pseudouridine synthase A 1 OS=Baci... 154 2e-35
R8J2Y5_BACCE (tr|R8J2Y5) tRNA pseudouridine synthase A 1 OS=Baci... 154 2e-35
J8FP83_BACCE (tr|J8FP83) tRNA pseudouridine synthase A OS=Bacill... 154 2e-35
J7W9M0_BACCE (tr|J7W9M0) tRNA pseudouridine synthase A OS=Bacill... 154 2e-35
J7W2N1_BACCE (tr|J7W2N1) tRNA pseudouridine synthase A OS=Bacill... 154 2e-35
D7WL97_BACCE (tr|D7WL97) tRNA pseudouridine synthase A OS=Bacill... 154 2e-35
C3A0X2_BACMY (tr|C3A0X2) tRNA pseudouridine synthase A OS=Bacill... 154 2e-35
C2SF03_BACCE (tr|C2SF03) tRNA pseudouridine synthase A OS=Bacill... 154 2e-35
R6S4H7_9CLOT (tr|R6S4H7) tRNA pseudouridine synthase A 1 OS=Clos... 154 2e-35
I0CVZ0_BACAN (tr|I0CVZ0) tRNA pseudouridine synthase A OS=Bacill... 154 2e-35
G8U548_BACCE (tr|G8U548) tRNA pseudouridine synthase A OS=Bacill... 154 2e-35
C3AGD9_BACMY (tr|C3AGD9) tRNA pseudouridine synthase A OS=Bacill... 154 2e-35
Q2LUS6_SYNAS (tr|Q2LUS6) tRNA pseudouridine synthase A OS=Syntro... 154 2e-35
F0PR58_BACT0 (tr|F0PR58) tRNA pseudouridine synthase A OS=Bacill... 154 2e-35
R6FNV4_9CLOT (tr|R6FNV4) tRNA pseudouridine synthase A OS=Clostr... 154 2e-35
C2MEY9_BACCE (tr|C2MEY9) tRNA pseudouridine synthase A OS=Bacill... 154 2e-35
B7HQX6_BACC7 (tr|B7HQX6) tRNA pseudouridine synthase A OS=Bacill... 154 2e-35
H0NJQ6_BACCE (tr|H0NJQ6) tRNA pseudouridine synthase A OS=Bacill... 154 2e-35
C2RXS1_BACCE (tr|C2RXS1) tRNA pseudouridine synthase A OS=Bacill... 154 2e-35
B5VC32_BACCE (tr|B5VC32) tRNA pseudouridine synthase A OS=Bacill... 154 2e-35
A9VSN7_BACWK (tr|A9VSN7) tRNA pseudouridine synthase A OS=Bacill... 154 3e-35
R8NKK7_BACCE (tr|R8NKK7) tRNA pseudouridine synthase A 2 OS=Baci... 154 3e-35
J9B225_BACCE (tr|J9B225) tRNA pseudouridine synthase A OS=Bacill... 154 3e-35
J8PKK5_BACCE (tr|J8PKK5) tRNA pseudouridine synthase A OS=Bacill... 154 3e-35
J8NC00_BACCE (tr|J8NC00) tRNA pseudouridine synthase A OS=Bacill... 154 3e-35
J8K043_BACCE (tr|J8K043) tRNA pseudouridine synthase A OS=Bacill... 154 3e-35
J8HMI1_BACCE (tr|J8HMI1) tRNA pseudouridine synthase A OS=Bacill... 154 3e-35
J8DET5_BACCE (tr|J8DET5) tRNA pseudouridine synthase A OS=Bacill... 154 3e-35
J8CIP2_BACCE (tr|J8CIP2) tRNA pseudouridine synthase A OS=Bacill... 154 3e-35
J8C758_BACCE (tr|J8C758) tRNA pseudouridine synthase A OS=Bacill... 154 3e-35
F8HYD3_WEIKK (tr|F8HYD3) tRNA pseudouridine synthase A OS=Weisse... 154 3e-35
J1GPN7_9LACT (tr|J1GPN7) tRNA pseudouridine synthase A OS=Weisse... 154 3e-35
A0R8L1_BACAH (tr|A0R8L1) tRNA pseudouridine synthase A OS=Bacill... 154 3e-35
R5YXD1_9FIRM (tr|R5YXD1) tRNA pseudouridine synthase A OS=Eubact... 154 3e-35
C2XNZ8_BACCE (tr|C2XNZ8) tRNA pseudouridine synthase A OS=Bacill... 154 3e-35
R6G740_9FIRM (tr|R6G740) tRNA pseudouridine synthase A 2 OS=Blau... 154 3e-35
R8U911_BACCE (tr|R8U911) tRNA pseudouridine synthase A 2 OS=Baci... 154 3e-35
R8R0N2_BACCE (tr|R8R0N2) tRNA pseudouridine synthase A 2 OS=Baci... 154 3e-35
R8PRK5_BACCE (tr|R8PRK5) tRNA pseudouridine synthase A 2 OS=Baci... 154 3e-35
D9TSD7_THETC (tr|D9TSD7) tRNA pseudouridine synthase A OS=Thermo... 154 3e-35
L0IHA0_THETR (tr|L0IHA0) tRNA pseudouridine synthase A OS=Thermo... 154 3e-35
F0YU70_9CLOT (tr|F0YU70) tRNA pseudouridine synthase A OS=Clostr... 154 3e-35
F3BB98_9FIRM (tr|F3BB98) tRNA pseudouridine synthase A OS=Lachno... 154 3e-35
R8CKG1_BACCE (tr|R8CKG1) tRNA pseudouridine synthase A 2 OS=Baci... 154 3e-35
J8S9G1_BACCE (tr|J8S9G1) tRNA pseudouridine synthase A OS=Bacill... 154 3e-35
J8D7I9_BACCE (tr|J8D7I9) tRNA pseudouridine synthase A OS=Bacill... 154 3e-35
D3H7T3_STRM6 (tr|D3H7T3) tRNA pseudouridine synthase A OS=Strept... 154 3e-35
R7G3D4_9PROT (tr|R7G3D4) tRNA pseudouridine synthase A 3 OS=Acid... 154 4e-35
L5N9P5_9BACI (tr|L5N9P5) tRNA pseudouridine synthase A OS=Haloba... 154 4e-35
>K7MJW1_SOYBN (tr|K7MJW1) tRNA pseudouridine synthase OS=Glycine max PE=3 SV=1
Length = 324
Score = 502 bits (1293), Expect = e-140, Method: Compositional matrix adjust.
Identities = 235/269 (87%), Positives = 254/269 (94%), Gaps = 1/269 (0%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDK 65
+GWQYQ SPPTVQC +E+ALTRATKLQRKD CLVGASRTDAGVHAWGQVAHF TPFNYD
Sbjct: 55 AGWQYQQSPPTVQCTLEKALTRATKLQRKDFCLVGASRTDAGVHAWGQVAHFFTPFNYDN 114
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
LE++HAALNGLLP+DIRVREISP EFHARFSA SKIYHYKIYND IMDPFQRHFAYHS
Sbjct: 115 LEELHAALNGLLPTDIRVREISPASAEFHARFSAISKIYHYKIYNDAIMDPFQRHFAYHS 174
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
YKLNSAVMREAA+Y+VGKH+FSAFANAS+NDGVPDPVKH+FRFD+KEMGALLQ+EVEGS
Sbjct: 175 VYKLNSAVMREAAKYFVGKHDFSAFANASNNDGVPDPVKHVFRFDLKEMGALLQIEVEGS 234
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYNE 245
GFLYRQVRNM ALL+QIG+EA+PPDI+ HILASRDRKELAKY+L APPHGLCLVSINYNE
Sbjct: 235 GFLYRQVRNMVALLLQIGREAIPPDIVPHILASRDRKELAKYSLSAPPHGLCLVSINYNE 294
Query: 246 SHLLPPPGC-PANSFGRHHTIRKCKVPFY 273
SHLLPPPGC PANSFGRHHTIRKCKVPF+
Sbjct: 295 SHLLPPPGCPPANSFGRHHTIRKCKVPFF 323
>K7LZ80_SOYBN (tr|K7LZ80) tRNA pseudouridine synthase OS=Glycine max PE=3 SV=1
Length = 327
Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust.
Identities = 234/269 (86%), Positives = 250/269 (92%), Gaps = 1/269 (0%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDK 65
+GWQYQ SPPTVQC VE+ALT+ATKLQRKDLCLVGASRTDAGVHAWGQVAHF TPFNYD
Sbjct: 58 AGWQYQESPPTVQCTVEKALTQATKLQRKDLCLVGASRTDAGVHAWGQVAHFFTPFNYDN 117
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
LE +HAALNGLLP+DIR+REISP EFHARFSAKSKIYHYKIYND IMDPFQRHFAYHS
Sbjct: 118 LEQLHAALNGLLPTDIRIREISPASAEFHARFSAKSKIYHYKIYNDAIMDPFQRHFAYHS 177
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
YKLNSAVMREAA Y+VGKH+FSAFANASHND VPDPVKH+FRFD+KEMGALLQLEVEGS
Sbjct: 178 VYKLNSAVMREAATYFVGKHDFSAFANASHNDRVPDPVKHVFRFDLKEMGALLQLEVEGS 237
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYNE 245
GFLYRQVRNM ALL+QIG+EA+PPDI+ HILASRDRKELAKY+L APPHGLCLVSINYNE
Sbjct: 238 GFLYRQVRNMVALLLQIGREAIPPDIVPHILASRDRKELAKYSLPAPPHGLCLVSINYNE 297
Query: 246 SHLLPPPGC-PANSFGRHHTIRKCKVPFY 273
SHLLPPP PANSFGRH TIRKCKVPF+
Sbjct: 298 SHLLPPPESPPANSFGRHQTIRKCKVPFF 326
>G7JR09_MEDTR (tr|G7JR09) tRNA pseudouridine synthase OS=Medicago truncatula
GN=MTR_4g123970 PE=3 SV=1
Length = 322
Score = 489 bits (1259), Expect = e-136, Method: Compositional matrix adjust.
Identities = 228/267 (85%), Positives = 244/267 (91%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDK 65
+GWQYQ SPPTVQC VE+AL RATKLQRKDL LVGASRTDAGVHAWGQVAHF+TPFNYD
Sbjct: 56 AGWQYQESPPTVQCAVEKALIRATKLQRKDLQLVGASRTDAGVHAWGQVAHFLTPFNYDN 115
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
L+ +HAALNGLLPSDIRVREISP EFHARFS KSKIYHYKIY+DTIMDPFQRHFAYH+
Sbjct: 116 LDSVHAALNGLLPSDIRVREISPASAEFHARFSVKSKIYHYKIYSDTIMDPFQRHFAYHN 175
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
YKLNSA MREAA+Y++GKH+F+AF NASHND +PDPVKHIFRFDVKEMGALLQLEVEGS
Sbjct: 176 MYKLNSAAMREAARYFIGKHDFTAFENASHNDRIPDPVKHIFRFDVKEMGALLQLEVEGS 235
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYNE 245
GFLYRQVRNM ALL+QIGKEA PPDI+ HILASRDRKELAKY + PPHGLCLVSINYNE
Sbjct: 236 GFLYRQVRNMVALLLQIGKEATPPDIVPHILASRDRKELAKYCYYLPPHGLCLVSINYNE 295
Query: 246 SHLLPPPGCPANSFGRHHTIRKCKVPF 272
SHLLPPPGCPA SFG HHTIRKCKV F
Sbjct: 296 SHLLPPPGCPAKSFGMHHTIRKCKVVF 322
>G7JR08_MEDTR (tr|G7JR08) tRNA pseudouridine synthase OS=Medicago truncatula
GN=MTR_4g123970 PE=3 SV=1
Length = 350
Score = 488 bits (1256), Expect = e-136, Method: Compositional matrix adjust.
Identities = 228/267 (85%), Positives = 244/267 (91%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDK 65
+GWQYQ SPPTVQC VE+AL RATKLQRKDL LVGASRTDAGVHAWGQVAHF+TPFNYD
Sbjct: 84 AGWQYQESPPTVQCAVEKALIRATKLQRKDLQLVGASRTDAGVHAWGQVAHFLTPFNYDN 143
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
L+ +HAALNGLLPSDIRVREISP EFHARFS KSKIYHYKIY+DTIMDPFQRHFAYH+
Sbjct: 144 LDSVHAALNGLLPSDIRVREISPASAEFHARFSVKSKIYHYKIYSDTIMDPFQRHFAYHN 203
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
YKLNSA MREAA+Y++GKH+F+AF NASHND +PDPVKHIFRFDVKEMGALLQLEVEGS
Sbjct: 204 MYKLNSAAMREAARYFIGKHDFTAFENASHNDRIPDPVKHIFRFDVKEMGALLQLEVEGS 263
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYNE 245
GFLYRQVRNM ALL+QIGKEA PPDI+ HILASRDRKELAKY + PPHGLCLVSINYNE
Sbjct: 264 GFLYRQVRNMVALLLQIGKEATPPDIVPHILASRDRKELAKYCYYLPPHGLCLVSINYNE 323
Query: 246 SHLLPPPGCPANSFGRHHTIRKCKVPF 272
SHLLPPPGCPA SFG HHTIRKCKV F
Sbjct: 324 SHLLPPPGCPAKSFGMHHTIRKCKVVF 350
>I1LYF8_SOYBN (tr|I1LYF8) tRNA pseudouridine synthase OS=Glycine max PE=3 SV=2
Length = 281
Score = 484 bits (1245), Expect = e-134, Method: Compositional matrix adjust.
Identities = 230/264 (87%), Positives = 245/264 (92%), Gaps = 1/264 (0%)
Query: 11 QMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDKLEDIH 70
Q SPPTVQC VE+ALT+ATKLQRKDLCLVGASRTDAGVHAWGQVAHF TPFNYD LE +H
Sbjct: 17 QESPPTVQCTVEKALTQATKLQRKDLCLVGASRTDAGVHAWGQVAHFFTPFNYDNLEQLH 76
Query: 71 AALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHSPYKLN 130
AALNGLLP+DIR+REISP EFHARFSAKSKIYHYKIYND IMDPFQRHFAYHS YKLN
Sbjct: 77 AALNGLLPTDIRIREISPASAEFHARFSAKSKIYHYKIYNDAIMDPFQRHFAYHSVYKLN 136
Query: 131 SAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGSGFLYR 190
SAVMREAA Y+VGKH+FSAFANASHND VPDPVKH+FRFD+KEMGALLQLEVEGSGFLYR
Sbjct: 137 SAVMREAATYFVGKHDFSAFANASHNDRVPDPVKHVFRFDLKEMGALLQLEVEGSGFLYR 196
Query: 191 QVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYNESHLLP 250
QVRNM ALL+QIG+EA+PPDI+ HILASRDRKELAKY+L APPHGLCLVSINYNESHLLP
Sbjct: 197 QVRNMVALLLQIGREAIPPDIVPHILASRDRKELAKYSLPAPPHGLCLVSINYNESHLLP 256
Query: 251 PPGC-PANSFGRHHTIRKCKVPFY 273
PP PANSFGRH TIRKCKVPF+
Sbjct: 257 PPESPPANSFGRHQTIRKCKVPFF 280
>D7T696_VITVI (tr|D7T696) tRNA pseudouridine synthase OS=Vitis vinifera
GN=VIT_05s0020g00860 PE=3 SV=1
Length = 326
Score = 455 bits (1171), Expect = e-126, Method: Compositional matrix adjust.
Identities = 211/268 (78%), Positives = 236/268 (88%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDK 65
SGWQYQ SPPT+QC+VE+ALTRATKL+R+DL LVGASRTD GVHAWGQVAHF+TPFNYD
Sbjct: 59 SGWQYQQSPPTIQCIVEKALTRATKLEREDLYLVGASRTDTGVHAWGQVAHFLTPFNYDG 118
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
LE IHAALNGLLP DIRVREISP EFHARFS KSKIYHYKIYND +MDPF RH+ YHS
Sbjct: 119 LESIHAALNGLLPPDIRVREISPAVPEFHARFSVKSKIYHYKIYNDAVMDPFLRHYVYHS 178
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
YKLN+ MREAA+++ GKH+FSAF NASHND P+PVK+IFRFDV EMGALLQLEVEGS
Sbjct: 179 VYKLNTLAMREAAKHFTGKHDFSAFVNASHNDRSPNPVKNIFRFDVNEMGALLQLEVEGS 238
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYNE 245
GFLYRQVRNM ALL+QIG+EA+PP+I+ ILA+RDRKELAKYAL APPHGLCL+S+ YNE
Sbjct: 239 GFLYRQVRNMVALLLQIGREAIPPNIVPWILATRDRKELAKYALSAPPHGLCLMSVKYNE 298
Query: 246 SHLLPPPGCPANSFGRHHTIRKCKVPFY 273
HL P GCPA S GRHHT+RKCK+PFY
Sbjct: 299 EHLQLPSGCPATSHGRHHTVRKCKLPFY 326
>A5BHS7_VITVI (tr|A5BHS7) tRNA pseudouridine synthase OS=Vitis vinifera
GN=VITISV_020811 PE=3 SV=1
Length = 403
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 211/284 (74%), Positives = 236/284 (83%), Gaps = 13/284 (4%)
Query: 3 IYTSGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFN 62
I GWQYQ SPPT+QC+VE+ALTRATKL+R+DL LVGASRTD GVHAWGQVAHF+TPFN
Sbjct: 120 IARRGWQYQQSPPTIQCIVEKALTRATKLEREDLYLVGASRTDTGVHAWGQVAHFLTPFN 179
Query: 63 YDKLEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFA 122
YD LE IHAALNGLLP DIRVREISP EFHARFS KSKIYHYKIYND +MDPF RH+
Sbjct: 180 YDGLESIHAALNGLLPPDIRVREISPAVPEFHARFSXKSKIYHYKIYNDAVMDPFLRHYV 239
Query: 123 YHSPYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEM-------- 174
YHS YKLN+ MREAA+++ GKH+FSAF NASHND P+PVK+IFRFDV EM
Sbjct: 240 YHSVYKLNTLAMREAAKHFTGKHDFSAFVNASHNDRSPNPVKNIFRFDVNEMMFLELIVN 299
Query: 175 -----GALLQLEVEGSGFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYAL 229
GALLQLEVEGSGFLYRQVRNM ALL+QIG+EA+PP+I+ ILA+RDRKELAKYAL
Sbjct: 300 CIIAQGALLQLEVEGSGFLYRQVRNMVALLLQIGREAIPPNIVPWILATRDRKELAKYAL 359
Query: 230 FAPPHGLCLVSINYNESHLLPPPGCPANSFGRHHTIRKCKVPFY 273
APPHGLCL+S+ YNE HL P GCPA S GRHHT+RKCK+PFY
Sbjct: 360 SAPPHGLCLMSVKYNEEHLQLPSGCPATSHGRHHTVRKCKLPFY 403
>M5XCI2_PRUPE (tr|M5XCI2) Uncharacterized protein OS=Prunus persica
GN=PRUPE_ppa008515mg PE=4 SV=1
Length = 328
Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust.
Identities = 204/268 (76%), Positives = 232/268 (86%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDK 65
+GWQYQ SPPT+QC VE+ L +ATKL+RKDL LVGASRTD GVHAWGQVAHFVTPFNYD
Sbjct: 61 AGWQYQSSPPTIQCFVEKVLMQATKLERKDLSLVGASRTDKGVHAWGQVAHFVTPFNYDS 120
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
++ IHAALNGLLPSDIRVREISP EFHARFSAKSKIYHYK+YNDT MDPFQR +AYHS
Sbjct: 121 IDSIHAALNGLLPSDIRVREISPAVPEFHARFSAKSKIYHYKVYNDTFMDPFQRDYAYHS 180
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
+KLN AVMREAA+Y++GKH+FSAFANAS + V DPVK+IFRFDV EMGALLQLEVEGS
Sbjct: 181 AHKLNPAVMREAAKYFIGKHDFSAFANASQKERVRDPVKNIFRFDVIEMGALLQLEVEGS 240
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYNE 245
GFLYRQVRNM +LL+QIG+EALPP ++ ILA+RDR+ELAKYA+FAPPHGL L ++ YNE
Sbjct: 241 GFLYRQVRNMVSLLLQIGREALPPYVVPMILATRDRRELAKYAMFAPPHGLSLATVKYNE 300
Query: 246 SHLLPPPGCPANSFGRHHTIRKCKVPFY 273
HL P GC SFGRH+TI CK+PFY
Sbjct: 301 EHLRLPSGCSTTSFGRHYTIGSCKLPFY 328
>M4CAJ8_BRARP (tr|M4CAJ8) tRNA pseudouridine synthase OS=Brassica rapa subsp.
pekinensis GN=Bra001227 PE=3 SV=1
Length = 322
Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust.
Identities = 197/268 (73%), Positives = 225/268 (83%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDK 65
+GWQYQ SPPTVQ ++E+ALT+ TKLQRK+L LVGA RTDAGVHAWGQVAHFVTPFNY
Sbjct: 55 AGWQYQESPPTVQSMLEKALTQITKLQRKELHLVGAGRTDAGVHAWGQVAHFVTPFNYTS 114
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
L+ IH+ALNGLLP DIRVREI EFHARFS +SK+Y Y+IY+DT MDPFQRHFAYH+
Sbjct: 115 LDSIHSALNGLLPQDIRVREIGAAVPEFHARFSCRSKVYRYQIYSDTFMDPFQRHFAYHT 174
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
YKLN+ MREAAQ++VGKH+FSAFANA+ DGVPDP+K I RFDV EMG+LLQLEVEGS
Sbjct: 175 AYKLNACKMREAAQHFVGKHDFSAFANATREDGVPDPLKTISRFDVIEMGSLLQLEVEGS 234
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYNE 245
GF+YRQVRNM ALLVQ+GKEAL DI+ IL ++DR+ELAKY L APPHGLCLVS+ Y E
Sbjct: 235 GFMYRQVRNMVALLVQVGKEALDSDIVPMILETKDRRELAKYTLPAPPHGLCLVSVKYKE 294
Query: 246 SHLLPPPGCPANSFGRHHTIRKCKVPFY 273
HL PP P SFGRHHTI KCK+PFY
Sbjct: 295 DHLQLPPDSPLTSFGRHHTITKCKLPFY 322
>M1CLH0_SOLTU (tr|M1CLH0) tRNA pseudouridine synthase OS=Solanum tuberosum
GN=PGSC0003DMG400027203 PE=3 SV=1
Length = 327
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 194/267 (72%), Positives = 224/267 (83%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDK 65
SGWQYQ S PTVQCV+E ALT+ TK+ RK+LCLVGASRTDAGVHAWGQVAHFVTPFNY+
Sbjct: 60 SGWQYQQSTPTVQCVLEEALTKKTKINRKELCLVGASRTDAGVHAWGQVAHFVTPFNYET 119
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
L+ IH A+NGLLPSDIRVRE SP EFHARFS SKIY Y++YN TIMDPF RH+AYHS
Sbjct: 120 LDGIHRAVNGLLPSDIRVREFSPAAPEFHARFSVTSKIYCYQVYNSTIMDPFLRHYAYHS 179
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
YKL++AVMR+AA+++VGKH+FSAFAN S ND VP+PVK I RFDV E G LL+LEVEGS
Sbjct: 180 EYKLDAAVMRDAAKHFVGKHDFSAFANTSRNDRVPNPVKTILRFDVVEKGPLLRLEVEGS 239
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYNE 245
GFLYRQVRNM ALL+Q+G++A+PPDI+ IL SRDRKELAKY L PPHGL L ++ YNE
Sbjct: 240 GFLYRQVRNMVALLLQVGRQAVPPDIVVRILESRDRKELAKYTLLLPPHGLSLETVKYNE 299
Query: 246 SHLLPPPGCPANSFGRHHTIRKCKVPF 272
HL+ P PA+SFGRHH+I KCKV F
Sbjct: 300 EHLILPTDSPASSFGRHHSISKCKVLF 326
>B9S012_RICCO (tr|B9S012) tRNA pseudouridine synthase OS=Ricinus communis
GN=RCOM_1003810 PE=3 SV=1
Length = 344
Score = 416 bits (1068), Expect = e-114, Method: Compositional matrix adjust.
Identities = 195/260 (75%), Positives = 221/260 (85%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDK 65
+GWQ+Q SPPT+QC +E+AL + TKL RKDL LVGASRTD GVHA+GQVAHFVTPFNY
Sbjct: 85 AGWQFQQSPPTIQCYLEKALIQVTKLDRKDLLLVGASRTDTGVHAFGQVAHFVTPFNYPS 144
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
L+ IHAALNGLLP DIRVREISP EFHARFS SK+YHYKIYNDT MDPF RH+AYHS
Sbjct: 145 LDTIHAALNGLLPPDIRVREISPAVPEFHARFSTISKLYHYKIYNDTFMDPFLRHYAYHS 204
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
YKLN+A MR+AA+Y++G H+FSAFANAS +D VP+PVK IFRFDV EMGALLQLEVEG+
Sbjct: 205 TYKLNAAAMRQAAKYFIGSHDFSAFANASRDDRVPNPVKTIFRFDVIEMGALLQLEVEGT 264
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYNE 245
GFLYRQVRNM ALL+QIGKEA+PP+I+ ILA+RDR+ELAKYAL PPHGLCLVSI YNE
Sbjct: 265 GFLYRQVRNMVALLLQIGKEAVPPEIVPKILAARDRRELAKYALPTPPHGLCLVSIKYNE 324
Query: 246 SHLLPPPGCPANSFGRHHTI 265
HL P GCP SFGR T+
Sbjct: 325 EHLRLPSGCPTTSFGRWFTV 344
>M0RPF3_MUSAM (tr|M0RPF3) tRNA pseudouridine synthase OS=Musa acuminata subsp.
malaccensis PE=3 SV=1
Length = 326
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 191/268 (71%), Positives = 222/268 (82%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDK 65
+GWQYQ SPPT+QC++E ALT TKL RKDLCLVGASRTDAGVHAWGQVAHF+TPF YD
Sbjct: 59 AGWQYQQSPPTIQCLIENALTCITKLDRKDLCLVGASRTDAGVHAWGQVAHFITPFMYDS 118
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
L+ +HAALNGLLP +IRVREIS EFHARFS KSK Y YKIYN +MDPF+ +AYHS
Sbjct: 119 LDTLHAALNGLLPPEIRVREISAACPEFHARFSTKSKTYQYKIYNYPVMDPFRSLYAYHS 178
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
YKLN VMREAA Y+VG H+FS+FANASHND + +PVK IFRFD+ E+ ALL LEVEG+
Sbjct: 179 SYKLNPVVMREAAAYFVGNHDFSSFANASHNDRLGNPVKEIFRFDITELDALLLLEVEGT 238
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYNE 245
GFL+RQVRNM ALL+QIG+EALPPD++ I+A+RDRKELAK AL APP GLCL+S+NYN
Sbjct: 239 GFLFRQVRNMVALLLQIGREALPPDVVPKIMAARDRKELAKVALSAPPQGLCLMSVNYNN 298
Query: 246 SHLLPPPGCPANSFGRHHTIRKCKVPFY 273
L PP GCPA SFGR H++ KCK+ FY
Sbjct: 299 ESLEPPEGCPAASFGRTHSVSKCKLAFY 326
>K4C1Z9_SOLLC (tr|K4C1Z9) tRNA pseudouridine synthase OS=Solanum lycopersicum
GN=Solyc05g053190.2 PE=3 SV=1
Length = 327
Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust.
Identities = 189/267 (70%), Positives = 223/267 (83%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDK 65
SGWQYQ S PTVQC++E ALT+ TK+ RK+LC+VGASRTDAGVHAWGQVAHF+TPFNY+
Sbjct: 60 SGWQYQQSTPTVQCILEEALTKKTKINRKELCVVGASRTDAGVHAWGQVAHFITPFNYET 119
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
L+ +H A+NGLLPSDIRVRE SP EFHARFS SKIY Y++YN TI+DPF RH+AYHS
Sbjct: 120 LDGVHRAINGLLPSDIRVREFSPAGPEFHARFSVTSKIYCYQVYNSTILDPFLRHYAYHS 179
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
YKLN+ VMR+AA+++VGKH+FSAFAN S ND VP+PVK I RFDV E G LL+LEVEGS
Sbjct: 180 EYKLNADVMRDAAKHFVGKHDFSAFANTSRNDRVPNPVKTILRFDVVEKGPLLRLEVEGS 239
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYNE 245
GFLYRQVRNM ALL+Q+G++A+PPDI+ IL SRDRKELAKY L PPHGL L ++ YNE
Sbjct: 240 GFLYRQVRNMVALLLQVGRQAVPPDIVVRILESRDRKELAKYTLLLPPHGLSLETVKYNE 299
Query: 246 SHLLPPPGCPANSFGRHHTIRKCKVPF 272
HL+ P PA+SFGRHH+I KCKV F
Sbjct: 300 EHLILPTDSPASSFGRHHSISKCKVLF 326
>D7L612_ARALL (tr|D7L612) tRNA pseudouridine synthase OS=Arabidopsis lyrata
subsp. lyrata GN=ARALYDRAFT_478015 PE=3 SV=1
Length = 323
Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust.
Identities = 190/269 (70%), Positives = 220/269 (81%), Gaps = 1/269 (0%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDK 65
+GWQYQ SPPT+Q ++E+AL + T+L RK+L L+GA RTDAGVHAWGQVAHFVTPFNY
Sbjct: 55 AGWQYQESPPTIQSMLEKALIQITELGRKELHLIGAGRTDAGVHAWGQVAHFVTPFNYTS 114
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
L+ HAALNGLLP DIRVRE+S EFHARFSA SK+Y Y+IYNDT MDPFQRH+AYH
Sbjct: 115 LDSFHAALNGLLPKDIRVRELSAAVPEFHARFSAHSKVYRYQIYNDTFMDPFQRHWAYHC 174
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
YKLN++ MREAA +VG H+FSAFANA+ DG+PDP+K I RFDV +MG+LLQLEVEGS
Sbjct: 175 AYKLNASKMREAANLFVGMHDFSAFANATREDGLPDPLKTISRFDVIQMGSLLQLEVEGS 234
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKY-ALFAPPHGLCLVSINYN 244
GFLYRQVRNM ALL+QIGKEAL DI+ IL ++DR+ LAKY L APPHGLCLVS+ Y
Sbjct: 235 GFLYRQVRNMVALLIQIGKEALDSDIVPMILETKDRRVLAKYTTLPAPPHGLCLVSVKYR 294
Query: 245 ESHLLPPPGCPANSFGRHHTIRKCKVPFY 273
ESHL P CP SFGRHHTI KCK+PFY
Sbjct: 295 ESHLKLPLDCPVTSFGRHHTITKCKLPFY 323
>Q9M904_ARATH (tr|Q9M904) tRNA pseudouridine synthase OS=Arabidopsis thaliana
GN=F17A9.10 PE=2 SV=1
Length = 298
Score = 402 bits (1032), Expect = e-110, Method: Compositional matrix adjust.
Identities = 189/269 (70%), Positives = 219/269 (81%), Gaps = 1/269 (0%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDK 65
+GWQYQ SPPT+Q ++E+AL + T+L RK+L L+GA RTDAGVHAWGQVAHFVTPFNY
Sbjct: 30 AGWQYQESPPTIQSMLEKALIQITELGRKELQLIGAGRTDAGVHAWGQVAHFVTPFNYTS 89
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
L+ HAALNGLLP DIRVRE+S EFHARFSA SK+Y Y+IYNDT MDPFQRH+AYH
Sbjct: 90 LDSFHAALNGLLPKDIRVRELSAAVPEFHARFSASSKVYRYQIYNDTFMDPFQRHWAYHC 149
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
YKLN++ MREAA +VGKH+FSAFANA+ DGVPDP+K I RFDV +MG+LLQLEVEGS
Sbjct: 150 AYKLNASKMREAANLFVGKHDFSAFANATREDGVPDPLKTISRFDVIQMGSLLQLEVEGS 209
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKY-ALFAPPHGLCLVSINYN 244
GFLYRQVRNM ALL+QIGKEAL DI+ IL ++DR+ LAKY +L A PHGLCLVS+ Y
Sbjct: 210 GFLYRQVRNMVALLIQIGKEALDSDIVPMILETKDRRVLAKYTSLPASPHGLCLVSVKYK 269
Query: 245 ESHLLPPPGCPANSFGRHHTIRKCKVPFY 273
E HL P CP S GRHHTI KCK+PFY
Sbjct: 270 EDHLKLPLDCPVTSSGRHHTITKCKLPFY 298
>A1A6J3_ARATH (tr|A1A6J3) tRNA pseudouridine synthase OS=Arabidopsis thaliana
GN=AT3G06950 PE=2 SV=1
Length = 323
Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust.
Identities = 189/269 (70%), Positives = 219/269 (81%), Gaps = 1/269 (0%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDK 65
+GWQYQ SPPT+Q ++E+AL + T+L RK+L L+GA RTDAGVHAWGQVAHFVTPFNY
Sbjct: 55 AGWQYQESPPTIQSMLEKALIQITELGRKELQLIGAGRTDAGVHAWGQVAHFVTPFNYTS 114
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
L+ HAALNGLLP DIRVRE+S EFHARFSA SK+Y Y+IYNDT MDPFQRH+AYH
Sbjct: 115 LDSFHAALNGLLPKDIRVRELSAAVPEFHARFSASSKVYRYQIYNDTFMDPFQRHWAYHC 174
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
YKLN++ MREAA +VGKH+FSAFANA+ DGVPDP+K I RFDV +MG+LLQLEVEGS
Sbjct: 175 AYKLNASKMREAANLFVGKHDFSAFANATREDGVPDPLKTISRFDVIQMGSLLQLEVEGS 234
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKY-ALFAPPHGLCLVSINYN 244
GFLYRQVRNM ALL+QIGKEAL DI+ IL ++DR+ LAKY +L A PHGLCLVS+ Y
Sbjct: 235 GFLYRQVRNMVALLIQIGKEALDSDIVPMILETKDRRVLAKYTSLPASPHGLCLVSVKYK 294
Query: 245 ESHLLPPPGCPANSFGRHHTIRKCKVPFY 273
E HL P CP S GRHHTI KCK+PFY
Sbjct: 295 EDHLKLPLDCPVTSSGRHHTITKCKLPFY 323
>Q0WPX6_ARATH (tr|Q0WPX6) tRNA pseudouridine synthase OS=Arabidopsis thaliana
GN=At3g06950 PE=2 SV=1
Length = 323
Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust.
Identities = 189/269 (70%), Positives = 219/269 (81%), Gaps = 1/269 (0%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDK 65
+GWQYQ SPPT+Q ++E+AL + T+L RK+L L+GA RTDAGVHAWGQVAHFVTPFNY
Sbjct: 55 AGWQYQESPPTIQSMLEKALIQITELGRKELQLIGAGRTDAGVHAWGQVAHFVTPFNYTS 114
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
L+ HAALNGLLP DIRVRE+S EFHARFSA SK+Y Y+IYNDT MDPFQRH+AYH
Sbjct: 115 LDSFHAALNGLLPKDIRVRELSAAVPEFHARFSASSKVYRYQIYNDTFMDPFQRHWAYHC 174
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
YKLN++ MREAA +VGKH+FSAFANA+ DGVPDP+K I RFDV +MG+LLQLEVEGS
Sbjct: 175 AYKLNASKMREAANLFVGKHDFSAFANATREDGVPDPLKTISRFDVIQMGSLLQLEVEGS 234
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKY-ALFAPPHGLCLVSINYN 244
GFLYRQVRNM ALL+QIGKEAL DI+ IL ++DR+ LAKY +L A PHGLCLVS+ Y
Sbjct: 235 GFLYRQVRNMVALLIQIGKEALDSDIVPMILETKDRRVLAKYTSLPASPHGLCLVSVKYK 294
Query: 245 ESHLLPPPGCPANSFGRHHTIRKCKVPFY 273
E HL P CP S GRHHTI KCK+PFY
Sbjct: 295 EDHLKLPLDCPVTSSGRHHTITKCKLPFY 323
>K7LZ81_SOYBN (tr|K7LZ81) tRNA pseudouridine synthase OS=Glycine max PE=3 SV=1
Length = 229
Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust.
Identities = 191/221 (86%), Positives = 204/221 (92%), Gaps = 1/221 (0%)
Query: 54 VAHFVTPFNYDKLEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTI 113
VAHF TPFNYD LE +HAALNGLLP+DIR+REISP EFHARFSAKSKIYHYKIYND I
Sbjct: 8 VAHFFTPFNYDNLEQLHAALNGLLPTDIRIREISPASAEFHARFSAKSKIYHYKIYNDAI 67
Query: 114 MDPFQRHFAYHSPYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKE 173
MDPFQRHFAYHS YKLNSAVMREAA Y+VGKH+FSAFANASHND VPDPVKH+FRFD+KE
Sbjct: 68 MDPFQRHFAYHSVYKLNSAVMREAATYFVGKHDFSAFANASHNDRVPDPVKHVFRFDLKE 127
Query: 174 MGALLQLEVEGSGFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPP 233
MGALLQLEVEGSGFLYRQVRNM ALL+QIG+EA+PPDI+ HILASRDRKELAKY+L APP
Sbjct: 128 MGALLQLEVEGSGFLYRQVRNMVALLLQIGREAIPPDIVPHILASRDRKELAKYSLPAPP 187
Query: 234 HGLCLVSINYNESHLLPPPGC-PANSFGRHHTIRKCKVPFY 273
HGLCLVSINYNESHLLPPP PANSFGRH TIRKCKVPF+
Sbjct: 188 HGLCLVSINYNESHLLPPPESPPANSFGRHQTIRKCKVPFF 228
>I1PU08_ORYGL (tr|I1PU08) tRNA pseudouridine synthase OS=Oryza glaberrima PE=3
SV=1
Length = 342
Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust.
Identities = 184/267 (68%), Positives = 217/267 (81%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDKL 66
GWQYQ SPPT+QC +E ALTR TKL RK+LCLVGA RTD GVHAWGQVAHF TPF+Y L
Sbjct: 76 GWQYQPSPPTIQCSIENALTRITKLDRKELCLVGAGRTDTGVHAWGQVAHFTTPFSYHCL 135
Query: 67 EDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHSP 126
+ +H+A+NGLLP +IRVREIS EFHAR S +SKIYHYKIYN +MDPF H+AYHS
Sbjct: 136 DSMHSAINGLLPHEIRVREISAAKPEFHARTSTRSKIYHYKIYNGPVMDPFHNHYAYHSA 195
Query: 127 YKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGSG 186
YKLNS MREAA+++VG H+F++FANA HND V P+K I RFDV EMGA+LQLE+EG+G
Sbjct: 196 YKLNSQAMREAAKHFVGTHDFTSFANAVHNDRVRSPIKKIMRFDVIEMGAILQLEIEGTG 255
Query: 187 FLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYNES 246
FLYRQVRNM ALL+Q+G+EALPPDI+ I+A+RDRKELAK AL APPHGL L+S+NY++
Sbjct: 256 FLYRQVRNMVALLLQVGREALPPDIVAKIIAARDRKELAKVALSAPPHGLYLMSVNYDKE 315
Query: 247 HLLPPPGCPANSFGRHHTIRKCKVPFY 273
L PP G P SFGR H I KCK+ FY
Sbjct: 316 MLQPPEGAPHISFGRTHQISKCKLLFY 342
>J3M5H1_ORYBR (tr|J3M5H1) tRNA pseudouridine synthase OS=Oryza brachyantha
GN=OB05G18450 PE=3 SV=1
Length = 366
Score = 389 bits (999), Expect = e-106, Method: Compositional matrix adjust.
Identities = 182/267 (68%), Positives = 216/267 (80%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDKL 66
GWQYQ SPPT+QC +E ALT TKL RK+LCL+G+ RTD GVHAWGQVAHF TPF+Y L
Sbjct: 100 GWQYQPSPPTIQCCIENALTCITKLDRKELCLIGSGRTDTGVHAWGQVAHFTTPFSYHCL 159
Query: 67 EDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHSP 126
+ IH+A+NGLLP +IRVREIS EFHAR S KSKIYHYKIYN +MDPF +AYHS
Sbjct: 160 DSIHSAINGLLPHEIRVREISAAKPEFHARTSTKSKIYHYKIYNGAVMDPFHNLYAYHSV 219
Query: 127 YKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGSG 186
YKLNS MREAA+++VG H+F++FANA HND V P+K I RFDV EMGA+LQLEVEG+G
Sbjct: 220 YKLNSQAMREAAKHFVGIHDFTSFANAVHNDRVRSPIKKIMRFDVIEMGAILQLEVEGTG 279
Query: 187 FLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYNES 246
FLYRQVRNM ALL+Q+G+EALPPDI+ HI+A+RDR+ELAK AL APPHGL L+++NY++
Sbjct: 280 FLYRQVRNMVALLLQVGREALPPDIVPHIIAARDRRELAKVALSAPPHGLYLMAVNYDKE 339
Query: 247 HLLPPPGCPANSFGRHHTIRKCKVPFY 273
L PP G P SFGR H I KCK+ FY
Sbjct: 340 MLNPPEGAPPISFGRTHQISKCKLLFY 366
>I1I448_BRADI (tr|I1I448) tRNA pseudouridine synthase OS=Brachypodium distachyon
GN=BRADI3G27090 PE=3 SV=1
Length = 278
Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust.
Identities = 174/267 (65%), Positives = 211/267 (79%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDKL 66
GWQYQ SPPT+QC +E+AL TKL RK+LCLVGA RTD GVHA GQVAHF TPF Y L
Sbjct: 12 GWQYQPSPPTIQCFLEKALIHITKLDRKELCLVGAGRTDTGVHARGQVAHFTTPFTYRCL 71
Query: 67 EDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHSP 126
+ H+A+NGLLP DIRVREIS EFHAR S KSKIYHYKIYN+ +MDPF ++AYHS
Sbjct: 72 DSFHSAINGLLPPDIRVREISAARPEFHARTSTKSKIYHYKIYNEAVMDPFHNNYAYHSA 131
Query: 127 YKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGSG 186
++LNS MREAA+++VG+H+F++FANA HND V P+K I RFDV EM A++QLEVEG+G
Sbjct: 132 HRLNSHAMREAAKHFVGEHDFTSFANAVHNDRVRSPIKKILRFDVTEMDAIIQLEVEGTG 191
Query: 187 FLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYNES 246
FLYRQVRNMAALL+Q+G+EALPP+I+ I+ ++DRKELAK A APPHGL L+S+NY+
Sbjct: 192 FLYRQVRNMAALLIQVGREALPPEIVPKIIEAKDRKELAKVAFLAPPHGLYLMSVNYDRE 251
Query: 247 HLLPPPGCPANSFGRHHTIRKCKVPFY 273
L PP P SFGR H I +CK+ FY
Sbjct: 252 ILKPPEDSPPISFGRTHQISRCKLLFY 278
>Q1ZY14_BETVU (tr|Q1ZY14) tRNA pseudouridine synthase OS=Beta vulgaris PE=3 SV=1
Length = 278
Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust.
Identities = 172/248 (69%), Positives = 200/248 (80%)
Query: 8 WQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDKLE 67
WQYQ SPPTVQC +E+ALT+ T L RK+L +VGA RTD GVHAWGQVAHF TPFNYD L+
Sbjct: 26 WQYQASPPTVQCAIEKALTKITHLDRKELSVVGAGRTDTGVHAWGQVAHFFTPFNYDSLD 85
Query: 68 DIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHSPY 127
++HAA NGLLPSDIRVRE+SP +FHARFSAK KIY Y IYN + MDPF R+ YHS Y
Sbjct: 86 EVHAAFNGLLPSDIRVREVSPASPQFHARFSAKGKIYRYSIYNSSFMDPFLRYHVYHSTY 145
Query: 128 KLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGSGF 187
KLN+AVM EAA+Y+ GKH+F+AFANA ND V DP+K I RFDV E G LL+LEVEGSGF
Sbjct: 146 KLNAAVMAEAARYFTGKHDFTAFANAIRNDRVRDPIKTISRFDVTERGPLLELEVEGSGF 205
Query: 188 LYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYNESH 247
LYRQVRNM ALL+QIG+EA+PPDI+ IL +++R+ELAKY PPHGL LVS+ YNE H
Sbjct: 206 LYRQVRNMVALLLQIGREAIPPDIVPEILETKNRRELAKYTKSTPPHGLSLVSVKYNEDH 265
Query: 248 LLPPPGCP 255
L P GCP
Sbjct: 266 LKLPSGCP 273
>K3YYB1_SETIT (tr|K3YYB1) tRNA pseudouridine synthase OS=Setaria italica
GN=Si019261m.g PE=3 SV=1
Length = 356
Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust.
Identities = 178/253 (70%), Positives = 204/253 (80%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDKL 66
GWQYQ SPPT+QC +E AL R TKL RK LCLVGA RTD GVHAWGQVAHF TPF YD L
Sbjct: 67 GWQYQPSPPTIQCFLENALIRITKLDRKKLCLVGAGRTDTGVHAWGQVAHFTTPFAYDCL 126
Query: 67 EDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHSP 126
IH+A+NGLLP +IRVREIS EFHAR S KSKIYHYKIYN+ IMDPF +AYHS
Sbjct: 127 HSIHSAINGLLPPEIRVREISAARPEFHARSSTKSKIYHYKIYNEAIMDPFHNCYAYHSA 186
Query: 127 YKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGSG 186
YKLN MR+AA+++VG H+F++FANA+HND P+K I RFDV EMGALLQLEVEG+G
Sbjct: 187 YKLNPHAMRQAAKHFVGIHDFTSFANAAHNDRERSPIKKITRFDVTEMGALLQLEVEGTG 246
Query: 187 FLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYNES 246
FLYRQVRNM ALL+Q+GKEALPPDI+ I+A+RDRKELA+ AL APPHGL L+S+NY+E
Sbjct: 247 FLYRQVRNMVALLLQVGKEALPPDIVPVIIAARDRKELARVALSAPPHGLYLMSVNYDEE 306
Query: 247 HLLPPPGCPANSF 259
L PP G P NSF
Sbjct: 307 ILKPPEGSPPNSF 319
>F2D073_HORVD (tr|F2D073) tRNA pseudouridine synthase OS=Hordeum vulgare var.
distichum PE=2 SV=1
Length = 328
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 174/267 (65%), Positives = 211/267 (79%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDKL 66
GWQYQ SPPT+QC +E+AL R TKL RK+LCLVGA RTD GVHA GQVAHF TPF Y L
Sbjct: 62 GWQYQPSPPTIQCFLEKALMRITKLDRKELCLVGAGRTDTGVHARGQVAHFTTPFAYHCL 121
Query: 67 EDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHSP 126
+ H+A+NGLLP DIRVREIS EFHAR S KSKIYHYKIYN+ +MDPF ++AYHS
Sbjct: 122 DSFHSAINGLLPPDIRVREISAACGEFHARTSTKSKIYHYKIYNEAVMDPFHTNYAYHSA 181
Query: 127 YKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGSG 186
+KLN M+EAA ++VG H+F++FANA HND V P+K I RFDV +M A++QLEVEG+G
Sbjct: 182 HKLNPHAMQEAANHFVGVHDFTSFANAVHNDRVRSPIKKISRFDVTKMDAIIQLEVEGTG 241
Query: 187 FLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYNES 246
FLYRQVRNM ALL+Q+G+E LPP+I+ I+A++DRKELAK AL APPHGL L+S+NY++
Sbjct: 242 FLYRQVRNMVALLIQVGREGLPPEIVPKIIAAKDRKELAKVALSAPPHGLYLMSVNYDKE 301
Query: 247 HLLPPPGCPANSFGRHHTIRKCKVPFY 273
L PP G P SFGR H I +CK+ FY
Sbjct: 302 ILKPPVGSPPVSFGRTHQISRCKLLFY 328
>M7ZE76_TRIUA (tr|M7ZE76) tRNA pseudouridine synthase A 1 OS=Triticum urartu
GN=TRIUR3_34434 PE=4 SV=1
Length = 303
Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust.
Identities = 174/267 (65%), Positives = 211/267 (79%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDKL 66
GWQYQ SPPT+QC +E+AL R TKL RK+LCLVGA RTD GVHA GQVAHF TPF Y L
Sbjct: 37 GWQYQPSPPTIQCFLEKALIRITKLDRKELCLVGAGRTDTGVHAQGQVAHFTTPFAYHCL 96
Query: 67 EDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHSP 126
+ H+A+NGLLP DIRVREIS EFHAR S KSKIYHYKIYN+ +MDPF ++AYHS
Sbjct: 97 DSFHSAINGLLPPDIRVREISAACPEFHARTSTKSKIYHYKIYNEAVMDPFHTNYAYHSA 156
Query: 127 YKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGSG 186
+KLN M+EAA ++VG H+F++FANA HND V P+K I RFDV +M A++QLEVEG+G
Sbjct: 157 HKLNPHAMQEAANHFVGVHDFTSFANAVHNDRVRSPIKKISRFDVTKMDAIIQLEVEGTG 216
Query: 187 FLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYNES 246
FLYRQVRNM ALL+Q+G+E LPP+I+ I+A++DRKELAK AL APPHGL L+S+NY++
Sbjct: 217 FLYRQVRNMVALLIQVGREGLPPEIVPGIIAAKDRKELAKVALSAPPHGLYLMSVNYDKE 276
Query: 247 HLLPPPGCPANSFGRHHTIRKCKVPFY 273
L PP G P SFGR H I +CK+ FY
Sbjct: 277 ILKPPVGSPPVSFGRTHQISRCKLLFY 303
>M0UT32_HORVD (tr|M0UT32) tRNA pseudouridine synthase OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 248
Score = 337 bits (863), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 160/247 (64%), Positives = 194/247 (78%)
Query: 27 RATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDKLEDIHAALNGLLPSDIRVREI 86
R TKL RK+LCLVGA RTD GVHA GQVAHF TPF Y L+ H+A+NGLLP DIRVREI
Sbjct: 2 RITKLDRKELCLVGAGRTDTGVHARGQVAHFTTPFAYHCLDSFHSAINGLLPPDIRVREI 61
Query: 87 SPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHSPYKLNSAVMREAAQYYVGKHN 146
S EFHAR S KSKIYHYKIYN+ +MDPF ++AYHS +KLN M+EAA ++VG H+
Sbjct: 62 SAACGEFHARTSTKSKIYHYKIYNEAVMDPFHTNYAYHSAHKLNPHAMQEAANHFVGVHD 121
Query: 147 FSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGSGFLYRQVRNMAALLVQIGKEA 206
F++FANA HND V P+K I RFDV +M A++QLEVEG+GFLYRQVRNM ALL+Q+G+E
Sbjct: 122 FTSFANAVHNDRVRSPIKKISRFDVTKMDAIIQLEVEGTGFLYRQVRNMVALLIQVGREG 181
Query: 207 LPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYNESHLLPPPGCPANSFGRHHTIR 266
LPP+I+ I+A++DRKELAK AL APPHGL L+S+NY++ L PP G P SFGR H I
Sbjct: 182 LPPEIVPKIIAAKDRKELAKVALSAPPHGLYLMSVNYDKEILKPPVGSPPVSFGRTHQIS 241
Query: 267 KCKVPFY 273
+CK+ FY
Sbjct: 242 RCKLLFY 248
>B7EV41_ORYSJ (tr|B7EV41) tRNA pseudouridine synthase OS=Oryza sativa subsp.
japonica PE=2 SV=1
Length = 223
Score = 313 bits (801), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 147/220 (66%), Positives = 177/220 (80%)
Query: 54 VAHFVTPFNYDKLEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTI 113
VAHF TPF+Y L+ +H+A+NGLLP +IRVREIS EFHAR S +SKIYHYKIYN +
Sbjct: 4 VAHFTTPFSYHCLDSMHSAINGLLPHEIRVREISAAKPEFHARTSTRSKIYHYKIYNGPV 63
Query: 114 MDPFQRHFAYHSPYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKE 173
MDPF H+AYHS YKLNS MREAA+++VG H+F++FANA HND V P+K I RFDV E
Sbjct: 64 MDPFHNHYAYHSAYKLNSQAMREAAKHFVGTHDFTSFANAVHNDRVRSPIKKIMRFDVIE 123
Query: 174 MGALLQLEVEGSGFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPP 233
MGA+LQLE+EG+GFLYRQVRNM ALL+Q+G+EALPPDI+ I+A+RDRKELAK AL APP
Sbjct: 124 MGAILQLEIEGTGFLYRQVRNMVALLLQVGREALPPDIVAKIIAARDRKELAKVALSAPP 183
Query: 234 HGLCLVSINYNESHLLPPPGCPANSFGRHHTIRKCKVPFY 273
HGL L+S+NY++ L PP G P SFGR H I KCK+ FY
Sbjct: 184 HGLYLMSVNYDKEMLQPPEGAPHISFGRTHQISKCKLLFY 223
>R0G6L9_9BRAS (tr|R0G6L9) Uncharacterized protein OS=Capsella rubella
GN=CARUB_v10014440mg PE=4 SV=1
Length = 258
Score = 308 bits (788), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 142/197 (72%), Positives = 166/197 (84%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDK 65
+GWQYQ SPPT+Q V+E+AL TKL+RK+L LVGA RTDAGVHAWGQVAHFVTP NY
Sbjct: 55 AGWQYQESPPTIQSVLEKALIHITKLERKELHLVGAGRTDAGVHAWGQVAHFVTPINYTS 114
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
L+ IHAALNGLLP DIRVRE+S EFHARFSA SKIY Y+IYNDT MDPFQRH+A+H
Sbjct: 115 LDSIHAALNGLLPKDIRVREMSAAVPEFHARFSASSKIYRYQIYNDTFMDPFQRHWAFHC 174
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
YKLN++ MREAA+ +VGK++FSAFANA+ DGVPDP+K I+RFDV +MG+LLQLEVEGS
Sbjct: 175 AYKLNASKMREAAKLFVGKYDFSAFANATREDGVPDPLKTIYRFDVIQMGSLLQLEVEGS 234
Query: 186 GFLYRQVRNMAALLVQI 202
GFLYRQVRNM + L +
Sbjct: 235 GFLYRQVRNMVSSLFSL 251
>B8A3F7_MAIZE (tr|B8A3F7) tRNA pseudouridine synthase OS=Zea mays PE=2 SV=1
Length = 271
Score = 306 bits (783), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 148/221 (66%), Positives = 173/221 (78%)
Query: 53 QVAHFVTPFNYDKLEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDT 112
QVAHF TPF+Y L IH+A+NGL P +IRVREIS EFHAR S KSK+Y YKIYN+
Sbjct: 51 QVAHFTTPFSYSCLSSIHSAMNGLPPPEIRVREISAARPEFHARSSTKSKVYRYKIYNEA 110
Query: 113 IMDPFQRHFAYHSPYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVK 172
IMDPF H+AYHS YKLN M+EAA Y+VG H+F++FANA+HNDG P K I RFDV
Sbjct: 111 IMDPFHNHYAYHSAYKLNPHAMQEAANYFVGIHDFTSFANAAHNDGERRPTKKITRFDVT 170
Query: 173 EMGALLQLEVEGSGFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAP 232
EMGA+LQLEVEG+GFLYRQVRNM ALL+Q+GKEALPPDI+ I+A+RDRKELAK AL AP
Sbjct: 171 EMGAVLQLEVEGTGFLYRQVRNMVALLLQVGKEALPPDIVPAIIAARDRKELAKVALSAP 230
Query: 233 PHGLCLVSINYNESHLLPPPGCPANSFGRHHTIRKCKVPFY 273
PHGL L+S+NY+E L PP G P SFGR H + KCK+ Y
Sbjct: 231 PHGLYLMSVNYDEEILKPPEGSPPISFGRTHHLSKCKLTLY 271
>M0UT36_HORVD (tr|M0UT36) tRNA pseudouridine synthase OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 214
Score = 300 bits (768), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 142/213 (66%), Positives = 171/213 (80%)
Query: 27 RATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDKLEDIHAALNGLLPSDIRVREI 86
R TKL RK+LCLVGA RTD GVHA GQVAHF TPF Y L+ H+A+NGLLP DIRVREI
Sbjct: 2 RITKLDRKELCLVGAGRTDTGVHARGQVAHFTTPFAYHCLDSFHSAINGLLPPDIRVREI 61
Query: 87 SPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHSPYKLNSAVMREAAQYYVGKHN 146
S EFHAR S KSKIYHYKIYN+ +MDPF ++AYHS +KLN M+EAA ++VG H+
Sbjct: 62 SAACGEFHARTSTKSKIYHYKIYNEAVMDPFHTNYAYHSAHKLNPHAMQEAANHFVGVHD 121
Query: 147 FSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGSGFLYRQVRNMAALLVQIGKEA 206
F++FANA HND V P+K I RFDV +M A++QLEVEG+GFLYRQVRNM ALL+Q+G+E
Sbjct: 122 FTSFANAVHNDRVRSPIKKISRFDVTKMDAIIQLEVEGTGFLYRQVRNMVALLIQVGREG 181
Query: 207 LPPDIIQHILASRDRKELAKYALFAPPHGLCLV 239
LPP+I+ I+A++DRKELAK AL APPHGL L+
Sbjct: 182 LPPEIVPKIIAAKDRKELAKVALSAPPHGLYLM 214
>B9FNM5_ORYSJ (tr|B9FNM5) tRNA pseudouridine synthase OS=Oryza sativa subsp.
japonica GN=OsJ_17893 PE=3 SV=1
Length = 279
Score = 296 bits (757), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 135/191 (70%), Positives = 157/191 (82%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDKL 66
GWQYQ SPPT+QC +E ALTR TKL RK+LCLVGA RTD GVHAWGQVAHF TPF+Y L
Sbjct: 78 GWQYQPSPPTIQCSIENALTRITKLDRKELCLVGAGRTDTGVHAWGQVAHFTTPFSYHCL 137
Query: 67 EDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHSP 126
+ +H+A+NGLLP +IRVREIS EFHAR S +SKIYHYKIYN +MDPF H+AYHS
Sbjct: 138 DSMHSAINGLLPHEIRVREISAAKPEFHARTSTRSKIYHYKIYNGPVMDPFHNHYAYHSA 197
Query: 127 YKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGSG 186
YKLNS MREAA+++VG H+F++FANA HND V P+K I RFDV EMGA+LQLE+EG+G
Sbjct: 198 YKLNSQAMREAAKHFVGTHDFTSFANAVHNDRVRSPIKKIMRFDVIEMGAILQLEIEGTG 257
Query: 187 FLYRQVRNMAA 197
FLYRQVRNMA
Sbjct: 258 FLYRQVRNMAG 268
>D7MWN1_ARALL (tr|D7MWN1) tRNA pseudouridine synthase OS=Arabidopsis lyrata
subsp. lyrata GN=ARALYDRAFT_920264 PE=3 SV=1
Length = 244
Score = 293 bits (749), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 140/209 (66%), Positives = 163/209 (77%), Gaps = 1/209 (0%)
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
L+ HAALNGLLP DIRVRE+S EFHARFSA+SK+Y Y+IYNDT MDPFQR++AYH
Sbjct: 36 LDSFHAALNGLLPKDIRVRELSAAVPEFHARFSAQSKVYRYQIYNDTFMDPFQRYWAYHC 95
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
YKLN++ MRE +VG H+ SAFANA+ DGVPDP+K I RF V +MG+LLQLEVEGS
Sbjct: 96 AYKLNASKMRETVDLFVGMHDVSAFANATREDGVPDPLKSISRFYVIQMGSLLQLEVEGS 155
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKY-ALFAPPHGLCLVSINYN 244
GFLYRQVRNM ALL+ IGKE+L DI+ IL ++DR+ LAKY L PPHGLCLVS+ Y
Sbjct: 156 GFLYRQVRNMVALLIHIGKESLDSDIVPMILETKDRRVLAKYTTLPVPPHGLCLVSVKYK 215
Query: 245 ESHLLPPPGCPANSFGRHHTIRKCKVPFY 273
E HL P CP SFGRHHTI KCK+PFY
Sbjct: 216 EDHLKLPLDCPVTSFGRHHTITKCKLPFY 244
>C5XVS8_SORBI (tr|C5XVS8) tRNA pseudouridine synthase OS=Sorghum bicolor
GN=Sb04g024110 PE=3 SV=1
Length = 201
Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 136/201 (67%), Positives = 158/201 (78%)
Query: 73 LNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHSPYKLNSA 132
+NGLLP +IRVREIS EFHAR S KSK+Y YKIYN+ IMDPF +AYHS YKLN
Sbjct: 1 MNGLLPPEIRVREISAARPEFHARTSTKSKVYRYKIYNEAIMDPFHNRYAYHSAYKLNPH 60
Query: 133 VMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGSGFLYRQV 192
M+EAA Y+VG H+F++FANA+HND K I RFDV EMGA+LQLEVEG+GFLYRQV
Sbjct: 61 AMQEAANYFVGTHDFTSFANAAHNDRERRSTKKITRFDVTEMGAVLQLEVEGTGFLYRQV 120
Query: 193 RNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYNESHLLPPP 252
RNM ALL+Q+GKEALPPDI+ I+A RDRKELAK AL APPHGLCL+S+NY+E L PP
Sbjct: 121 RNMVALLLQVGKEALPPDIVPAIIAVRDRKELAKVALSAPPHGLCLMSVNYDEEILKPPE 180
Query: 253 GCPANSFGRHHTIRKCKVPFY 273
G P SFGR H + KCK+PFY
Sbjct: 181 GSPPVSFGRTHHLSKCKLPFY 201
>B4FLG8_MAIZE (tr|B4FLG8) tRNA pseudouridine synthase OS=Zea mays PE=2 SV=1
Length = 201
Score = 283 bits (725), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 136/201 (67%), Positives = 159/201 (79%)
Query: 73 LNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHSPYKLNSA 132
+NGLLP +IRVREIS EFHAR S KSK+Y YKIYN+ IMDPF H+AYHS YKLN
Sbjct: 1 MNGLLPPEIRVREISAARPEFHARSSTKSKVYRYKIYNEAIMDPFHNHYAYHSAYKLNPH 60
Query: 133 VMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGSGFLYRQV 192
M+EAA Y+VG H+F++FANA+HNDG P K I RFDV EMGA+LQLEVEG+GFLYRQV
Sbjct: 61 AMQEAANYFVGIHDFTSFANAAHNDGERRPTKKITRFDVTEMGAVLQLEVEGTGFLYRQV 120
Query: 193 RNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYNESHLLPPP 252
RNM ALL+Q+GKEALPPDI+ I+A+RDRKELAK AL APPHGL L+S+NY+E L PP
Sbjct: 121 RNMVALLLQVGKEALPPDIVPAIIAARDRKELAKVALSAPPHGLYLMSVNYDEEILKPPE 180
Query: 253 GCPANSFGRHHTIRKCKVPFY 273
G P SFGR H + KCK+ Y
Sbjct: 181 GSPPISFGRTHHLSKCKLTLY 201
>A9RTE3_PHYPA (tr|A9RTE3) tRNA pseudouridine synthase OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_56067 PE=3 SV=1
Length = 299
Score = 275 bits (704), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 134/260 (51%), Positives = 174/260 (66%)
Query: 2 VIYTSGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPF 61
++ S WQ Q + ++Q VE AL++ T+L R +L LVGA RTDAGVHAWGQVAHF TP
Sbjct: 30 TVFRSRWQIQKNYVSIQEKVEDALSKFTRLPRDELKLVGAGRTDAGVHAWGQVAHFTTPT 89
Query: 62 NYDKLEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHF 121
+ LE +H +LNG+LP DIR+ E+S V +FHAR+SA K Y YK Y +MDPFQ +
Sbjct: 90 CFCDLEPLHTSLNGILPPDIRILEVSSVQPDFHARYSACRKTYQYKAYVSPVMDPFQHAY 149
Query: 122 AYHSPYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLE 181
AYH +N A M EAA Y+VG HNFSAFAN S + D ++ + F V +G L E
Sbjct: 150 AYHIKNSVNIAAMEEAASYFVGTHNFSAFANHSADTASRDTLRDLLSFTVSSIGPQLLFE 209
Query: 182 VEGSGFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSI 241
VEG F+Y+QVRNM LLVQ+GKE +PP +++ IL + DR+ELAK + AP HGL L+S+
Sbjct: 210 VEGKSFMYKQVRNMVGLLVQVGKELVPPSMVRTILLTEDRRELAKISPVAPAHGLYLMSV 269
Query: 242 NYNESHLLPPPGCPANSFGR 261
Y++ L P P P SFGR
Sbjct: 270 GYDDKVLRPVPNAPKASFGR 289
>B9HMQ8_POPTR (tr|B9HMQ8) tRNA pseudouridine synthase (Fragment) OS=Populus
trichocarpa GN=POPTRDRAFT_721191 PE=3 SV=1
Length = 232
Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 122/161 (75%), Positives = 141/161 (87%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDKL 66
GWQ+Q +PPT+QC++E+ALTRATKL+RKDL LVGASRTD GVHAWGQVAHFVTPFNYD L
Sbjct: 72 GWQFQQTPPTIQCILEKALTRATKLERKDLHLVGASRTDGGVHAWGQVAHFVTPFNYDSL 131
Query: 67 EDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHSP 126
+ IHAALNGLLP DIRVREIS V EFHARFSAK K YHYKI+NDT+MDPFQR +AYH
Sbjct: 132 DSIHAALNGLLPPDIRVREISAVVPEFHARFSAKGKTYHYKIFNDTVMDPFQRLYAYHVT 191
Query: 127 YKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIF 167
+KLN+AVMREAA +++G +FSAF N+S NDGVP+PVK IF
Sbjct: 192 HKLNAAVMREAANHFIGTRDFSAFVNSSRNDGVPNPVKTIF 232
>D8QUD6_SELML (tr|D8QUD6) tRNA pseudouridine synthase (Fragment) OS=Selaginella
moellendorffii GN=SELMODRAFT_78854 PE=3 SV=1
Length = 268
Score = 244 bits (623), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 122/248 (49%), Positives = 167/248 (67%), Gaps = 2/248 (0%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDK 65
SGWQYQ PTVQ ++E ALT+ T+ R++L + ASRTDAGVHA GQVAHF +P
Sbjct: 14 SGWQYQPDFPTVQGLIEDALTKLTRYTREELLMAAASRTDAGVHALGQVAHFHSPACIGD 73
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
L IH LNG LP +IRVREISP FHA+ A++K Y YK++ +MDP R +AYH
Sbjct: 74 LSRIHRGLNGTLPHEIRVREISPAKSSFHAQACARTKRYQYKLFVAPVMDPLLRLYAYHV 133
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEM--GALLQLEVE 183
P +L+ A M EA Y+VGKH+FS F+N+S + +PV+ I RFD+ E G +L E+E
Sbjct: 134 PERLDVAAMAEACGYFVGKHDFSTFSNSSTLRPLQNPVREILRFDLLEQASGPVLCFEIE 193
Query: 184 GSGFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINY 243
G+GF ++Q+RNM L+V IGK +I +LA +DR++LA+ ++ AP GL LVS++Y
Sbjct: 194 GTGFFHKQIRNMVGLIVAIGKGEHEARVIPELLAMKDRQKLARVSITAPSRGLTLVSVHY 253
Query: 244 NESHLLPP 251
++S L P
Sbjct: 254 DQSDLDLP 261
>M0UT37_HORVD (tr|M0UT37) tRNA pseudouridine synthase OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 191
Score = 244 bits (623), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 115/173 (66%), Positives = 136/173 (78%)
Query: 27 RATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDKLEDIHAALNGLLPSDIRVREI 86
R TKL RK+LCLVGA RTD GVHA GQVAHF TPF Y L+ H+A+NGLLP DIRVREI
Sbjct: 2 RITKLDRKELCLVGAGRTDTGVHARGQVAHFTTPFAYHCLDSFHSAINGLLPPDIRVREI 61
Query: 87 SPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHSPYKLNSAVMREAAQYYVGKHN 146
S EFHAR S KSKIYHYKIYN+ +MDPF ++AYHS +KLN M+EAA ++VG H+
Sbjct: 62 SAACGEFHARTSTKSKIYHYKIYNEAVMDPFHTNYAYHSAHKLNPHAMQEAANHFVGVHD 121
Query: 147 FSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGSGFLYRQVRNMAALL 199
F++FANA HND V P+K I RFDV +M A++QLEVEG+GFLYRQVRNM L+
Sbjct: 122 FTSFANAVHNDRVRSPIKKISRFDVTKMDAIIQLEVEGTGFLYRQVRNMVILI 174
>D8R403_SELML (tr|D8R403) tRNA pseudouridine synthase (Fragment) OS=Selaginella
moellendorffii GN=SELMODRAFT_84331 PE=3 SV=1
Length = 269
Score = 243 bits (621), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 121/249 (48%), Positives = 168/249 (67%), Gaps = 3/249 (1%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDK 65
SGWQYQ PTVQ ++E ALT+ T+ R++L + ASRTDAGVHA GQVAHF +P
Sbjct: 14 SGWQYQPDFPTVQGLIEDALTKLTRYTREELLMAAASRTDAGVHALGQVAHFHSPACIGD 73
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
L IH LNG LP +IRVREISP FHA+ A++K Y YK++ +MDP R +AYH
Sbjct: 74 LSRIHRGLNGTLPHEIRVREISPAKSSFHAQACARTKRYQYKLFVAPVMDPLLRLYAYHV 133
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKE---MGALLQLEV 182
P +L+ A M EA Y+VGKH+FS F+N+S + +PV+ I RF++ E +G +L E+
Sbjct: 134 PERLDVAAMAEACGYFVGKHDFSTFSNSSTLRPLQNPVREILRFELLEQASLGPVLCFEI 193
Query: 183 EGSGFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSIN 242
EG+GF ++Q+RNM L+V IGK +I +LA +DR++LA+ ++ AP GL LVS++
Sbjct: 194 EGTGFFHKQIRNMVGLIVAIGKGEHQARVIPELLAMKDRQKLARVSITAPSRGLTLVSVH 253
Query: 243 YNESHLLPP 251
Y++S L P
Sbjct: 254 YDQSDLDLP 262
>M0UT31_HORVD (tr|M0UT31) tRNA pseudouridine synthase OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 180
Score = 243 bits (619), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 114/174 (65%), Positives = 137/174 (78%)
Query: 27 RATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDKLEDIHAALNGLLPSDIRVREI 86
R TKL RK+LCLVGA RTD GVHA GQVAHF TPF Y L+ H+A+NGLLP DIRVREI
Sbjct: 2 RITKLDRKELCLVGAGRTDTGVHARGQVAHFTTPFAYHCLDSFHSAINGLLPPDIRVREI 61
Query: 87 SPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHSPYKLNSAVMREAAQYYVGKHN 146
S EFHAR S KSKIYHYKIYN+ +MDPF ++AYHS +KLN M+EAA ++VG H+
Sbjct: 62 SAACGEFHARTSTKSKIYHYKIYNEAVMDPFHTNYAYHSAHKLNPHAMQEAANHFVGVHD 121
Query: 147 FSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGSGFLYRQVRNMAALLV 200
F++FANA HND V P+K I RFDV +M A++QLEVEG+GFLYRQVRNM+ ++
Sbjct: 122 FTSFANAVHNDRVRSPIKKISRFDVTKMDAIIQLEVEGTGFLYRQVRNMSNMIT 175
>M1CLG9_SOLTU (tr|M1CLG9) tRNA pseudouridine synthase OS=Solanum tuberosum
GN=PGSC0003DMG400027203 PE=3 SV=1
Length = 160
Score = 240 bits (612), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 111/159 (69%), Positives = 132/159 (83%)
Query: 114 MDPFQRHFAYHSPYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKE 173
MDPF RH+AYHS YKL++AVMR+AA+++VGKH+FSAFAN S ND VP+PVK I RFDV E
Sbjct: 1 MDPFLRHYAYHSEYKLDAAVMRDAAKHFVGKHDFSAFANTSRNDRVPNPVKTILRFDVVE 60
Query: 174 MGALLQLEVEGSGFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPP 233
G LL+LEVEGSGFLYRQVRNM ALL+Q+G++A+PPDI+ IL SRDRKELAKY L PP
Sbjct: 61 KGPLLRLEVEGSGFLYRQVRNMVALLLQVGRQAVPPDIVVRILESRDRKELAKYTLLLPP 120
Query: 234 HGLCLVSINYNESHLLPPPGCPANSFGRHHTIRKCKVPF 272
HGL L ++ YNE HL+ P PA+SFGRHH+I KCKV F
Sbjct: 121 HGLSLETVKYNEEHLILPTDSPASSFGRHHSISKCKVLF 159
>F8KVL2_PARAV (tr|F8KVL2) tRNA pseudouridine synthase A OS=Parachlamydia
acanthamoebae (strain UV7) GN=truA1 PE=3 SV=1
Length = 256
Score = 186 bits (473), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 103/246 (41%), Positives = 147/246 (59%), Gaps = 7/246 (2%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDK 65
SGWQ Q + +Q +VE+ + K+ R+ + +V + RTDAGVHA GQVAHF T D
Sbjct: 17 SGWQIQPNALAIQEIVEKEIG---KIVRQPVRVVASGRTDAGVHARGQVAHFSTDAEID- 72
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
L ++NGLLP DIRV++I VP +FHA++S K YHY + + PF R +A+H
Sbjct: 73 LRRFLVSINGLLPKDIRVKDICQVPPDFHAQYSVSGKAYHYHLTLSRVQSPFSRFYAWHI 132
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
KL+ + ++ AAQ +VG H+F++FAN +H + + V+ I R DV +LE EG
Sbjct: 133 RQKLDLSQLQAAAQLFVGTHDFTSFANEAHREHPQNAVRTIKRVDVIMEDEGCRLEFEGD 192
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYNE 245
GFLY+ VRNM +L+++ P I I A++DRK+ K APPHGL L +N+ E
Sbjct: 193 GFLYKMVRNMVGILIEVATGYRPITDIPAIFAAKDRKKAGKA---APPHGLFLHQVNFPE 249
Query: 246 SHLLPP 251
L P
Sbjct: 250 GVLSFP 255
>F6DPF5_DESRL (tr|F6DPF5) tRNA pseudouridine synthase A OS=Desulfotomaculum
ruminis (strain ATCC 23193 / DSM 2154 / NCIB 8452 / DL)
GN=truA PE=3 SV=1
Length = 251
Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 99/241 (41%), Positives = 148/241 (61%), Gaps = 10/241 (4%)
Query: 7 GWQYQMSP--PTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYD 64
G+Q Q PTVQ +E L+ +L +K + ++GA RTDAGVHA GQV +F
Sbjct: 19 GFQEQRGTGLPTVQEALEAVLS---QLAQKPVQVIGAGRTDAGVHALGQVVNFRCDPWRI 75
Query: 65 KLEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYH 124
+E A+N LLP+DI V + PVP++FHARFSA +K Y Y IY+ IM P QR + +H
Sbjct: 76 PVERTPLAMNPLLPADISVLKAEPVPQDFHARFSAIAKTYRYSIYHHRIMSPLQRLYCHH 135
Query: 125 SPYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEG 184
P +L++ M++AAQY +G H+F +F + V D V+ I+R +V E G L+ + V G
Sbjct: 136 EPRRLDTGAMKQAAQYLLGTHDFKSF--QAQGTPVRDTVRTIYRAEVVEEGPLIHIYVRG 193
Query: 185 SGFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
+GFLY VR +A L++ G + P+ ++HI+AS++R + PP GLCL+ + Y+
Sbjct: 194 NGFLYNMVRIIAGTLLKAGLGKIKPEEMEHIIASKNR---VLAGVTVPPRGLCLMEVEYS 250
Query: 245 E 245
+
Sbjct: 251 K 251
>K8DYI1_9FIRM (tr|K8DYI1) tRNA pseudouridine synthase A OS=Desulfotomaculum
hydrothermale Lam5 = DSM 18033 GN=truA PE=3 SV=1
Length = 250
Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 97/228 (42%), Positives = 134/228 (58%), Gaps = 8/228 (3%)
Query: 16 TVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDKLEDIHAALNG 75
TVQ V+E L+ K+ + + ++GA RTDAGVHAWGQV +F + E IH A+N
Sbjct: 31 TVQEVLESTLS---KIAKDTIQVIGAGRTDAGVHAWGQVVNFRSGRWPVPTEKIHLAMNA 87
Query: 76 LLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHSPYKLNSAVMR 135
LLP DI+V + VP +FHARFSA +K Y Y IYN +M P R + YH P L+ M+
Sbjct: 88 LLPDDIKVLQAEEVPLDFHARFSATAKTYRYSIYNHRVMSPLHRLYCYHEPRLLDVRAMQ 147
Query: 136 EAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGSGFLYRQVRNM 195
E A Y VG H+F +F + V D V+ I+R ++ L+ L + G+GFLY VR +
Sbjct: 148 EGAAYLVGSHDFKSF--QAQGTPVKDTVRTIYRAEILSEPPLIHLYLRGNGFLYNMVRII 205
Query: 196 AALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINY 243
L+ IG +PP + I+A+RDR LA + PP GLCL+ + Y
Sbjct: 206 TGTLLDIGMGKIPPSAMAQIIAARDRT-LAGTTV--PPQGLCLMEVEY 250
>M1Z647_9CLOT (tr|M1Z647) tRNA pseudouridine synthase A OS=Clostridium ultunense
Esp GN=truA PE=3 SV=1
Length = 244
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 100/237 (42%), Positives = 140/237 (59%), Gaps = 9/237 (3%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDKL 66
GWQ Q + ++Q +ERA+ T + + L+G+ RTD+GVHA GQVA+F+T N +
Sbjct: 17 GWQKQKNGNSIQEEIERAIKLITG---ERVNLIGSGRTDSGVHAKGQVANFLTDSNI-PV 72
Query: 67 EDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHSP 126
+ ALN LP DI + + V E+FH+RF A K Y Y IYN I +P R+FAYH P
Sbjct: 73 DRFKFALNSKLPRDISIIDSRRVDEKFHSRFDAIRKRYQYIIYNKKIRNPLYRNFAYHVP 132
Query: 127 YKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGSG 186
Y LN M EA +Y++G H+FS+F + N V ++ I+ F +K G L+ +EG+G
Sbjct: 133 YFLNYKEMEEATKYFLGSHDFSSF--MASNSNVKTTIRTIYTFTIKRTGDLIIFSIEGNG 190
Query: 187 FLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINY 243
FLY VR + LV+IG L D I +I+ S++R E A Y APP GL L + Y
Sbjct: 191 FLYNMVRIIIGTLVEIGSGKLKSDSIPYIIHSKNR-EAAGYT--APPEGLYLEKVFY 244
>D9RZP5_THEOJ (tr|D9RZP5) tRNA pseudouridine synthase A OS=Thermosediminibacter
oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P)
GN=truA PE=3 SV=1
Length = 243
Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 99/237 (41%), Positives = 141/237 (59%), Gaps = 9/237 (3%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDKL 66
GWQ Q + +VQ V+E+A+ L + + ++GA RTDAGVHA GQVA+F T +
Sbjct: 16 GWQKQNNALSVQEVLEKAIY---ALTGERVSIIGAGRTDAGVHARGQVANFRTNTRI-PV 71
Query: 67 EDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHSP 126
E + A+N LP DI V+ VP++FHAR+SAK+K+Y Y IYN P R ++Y P
Sbjct: 72 ERLPYAINSKLPEDIAVKGAEAVPDDFHARYSAKAKVYTYSIYNAPFPSPLLRRYSYFFP 131
Query: 127 YKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGSG 186
L+ MR AA+ ++G H+F+AF + V V++I R DVK+ G LL +EVE G
Sbjct: 132 LPLDVEAMRRAAKAFIGVHDFAAF--RASGSSVKTSVRNITRLDVKKCGKLLTIEVEADG 189
Query: 187 FLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINY 243
FLY VR +A L+++G P+ I I+ SRDR+ + + P HGLCL + Y
Sbjct: 190 FLYNMVRIIAGTLLEVGTGKKDPEEIPSIIESRDRE---RAGVTLPAHGLCLEKVIY 243
>D1R655_9CHLA (tr|D1R655) tRNA pseudouridine synthase A OS=Parachlamydia
acanthamoebae str. Hall's coccus GN=truA PE=3 SV=1
Length = 231
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 98/235 (41%), Positives = 141/235 (60%), Gaps = 7/235 (2%)
Query: 17 VQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDKLEDIHAALNGL 76
+Q +VE+ + K+ R+ + +V + RTDAGVHA GQVAHF T D L ++NGL
Sbjct: 3 IQEIVEKEIG---KIVRQPVRVVASGRTDAGVHARGQVAHFSTNAEID-LRRFLVSINGL 58
Query: 77 LPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHSPYKLNSAVMRE 136
LP DIRV++I VP +FHA++S K YHY + + PF R +A+H KL+ + ++
Sbjct: 59 LPKDIRVKDICQVPPDFHAQYSVSGKAYHYHLTLSRVQSPFSRFYAWHIRQKLDLSQLQV 118
Query: 137 AAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGSGFLYRQVRNMA 196
AAQ +VG H+F++FAN +H + + V+ I R DV +LE EG GFLY+ VRNM
Sbjct: 119 AAQLFVGTHDFTSFANEAHREHPQNAVRTIKRVDVIMEDEGCRLEFEGDGFLYKMVRNMV 178
Query: 197 ALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYNESHLLPP 251
+L+++ P I I A++DRK+ K APPHGL L +N+ E L P
Sbjct: 179 GILIEVATGYRPITDIPAIFAAKDRKKAGKA---APPHGLFLHQVNFPEGVLSFP 230
>B4AN00_BACPU (tr|B4AN00) tRNA pseudouridine synthase A OS=Bacillus pumilus ATCC
7061 GN=truA PE=3 SV=1
Length = 247
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 102/238 (42%), Positives = 142/238 (59%), Gaps = 7/238 (2%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDKL 66
G+Q Q TVQ +E AL R K Q + + +V + RTD+GVHA GQV HF TP + +
Sbjct: 16 GYQVQPGQRTVQTEIESALARMHK-QDELIPIVASGRTDSGVHAKGQVIHFDTPLSI-PM 73
Query: 67 EDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHSP 126
E ALN LLP DIRV + V E FHARFS SK Y YK+ +T + F R +A H P
Sbjct: 74 ERWPFALNSLLPDDIRVLKAEEVDESFHARFSVVSKEYRYKVSTETHQNVFTRQYACHFP 133
Query: 127 YKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGSG 186
Y+L++ MREAA + +G H+F++F A N V D V+ I+ + K + L++ V G+G
Sbjct: 134 YRLDADKMREAAGHLIGTHDFTSFCAA--NTEVQDKVREIYTLEWKNVSDGLEMRVRGNG 191
Query: 187 FLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
FLY VR +A L++IG P+ I+ +LA+R+R+ K AP HGL L + Y+
Sbjct: 192 FLYNMVRIIAGTLLEIGSGKFHPEEIKAMLAARNREAAGKT---APSHGLYLWEVFYD 246
>F7NF63_9FIRM (tr|F7NF63) tRNA pseudouridine synthase A OS=Acetonema longum DSM
6540 GN=truA PE=3 SV=1
Length = 245
Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 104/237 (43%), Positives = 138/237 (58%), Gaps = 9/237 (3%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDKL 66
G+Q Q + T+Q ++E L+R L L + GA RTDAGVHAWGQV +F T +
Sbjct: 18 GFQRQQNALTIQEILEERLSR---LFGHHLKITGAGRTDAGVHAWGQVVNFFTTGTI-PV 73
Query: 67 EDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHSP 126
E I AA NGLLP DI V+ + V +FHAR+SAKSKIY YK+YN + DPF R+ A+H
Sbjct: 74 ERIPAAANGLLPRDIVVKAAATVDADFHARYSAKSKIYIYKVYNHLLPDPFYRNLAWHIK 133
Query: 127 YKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGSG 186
L+ A MR+A G H+FSAF A DPV+ + + D ++ + L G+G
Sbjct: 134 GSLDLAKMRQALAVVQGTHDFSAFRAAGGA--AADPVRTMLQTDCRQQSGTIDLLFHGTG 191
Query: 187 FLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINY 243
FLY VRN+ LV+IG P + + ILAS+DR + + APP GL L I Y
Sbjct: 192 FLYHMVRNLTGTLVEIGLGKRPHEDMGPILASKDRNQA---GITAPPQGLYLSEIFY 245
>K2NFD2_9BACI (tr|K2NFD2) tRNA pseudouridine synthase A OS=Bacillus sp. HYC-10
GN=truA PE=3 SV=1
Length = 247
Score = 173 bits (439), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 103/238 (43%), Positives = 139/238 (58%), Gaps = 7/238 (2%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDKL 66
G+Q Q TVQ +E AL + K Q + + +V + RTD+GVHA GQV HF TP +
Sbjct: 16 GYQVQPGQRTVQTEIESALAKMHK-QDELIPIVASGRTDSGVHAKGQVIHFDTPLAI-PM 73
Query: 67 EDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHSP 126
E ALN LLP DIRV + V E FHARF SK Y YK+ +T + F R +A H P
Sbjct: 74 ERWPFALNSLLPDDIRVLKAEEVDESFHARFGVASKEYRYKVSTETHQNVFTRQYACHYP 133
Query: 127 YKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGSG 186
Y L+ MREAA+Y +G H+F++F A N V D V+ I+ + K + L++ V GSG
Sbjct: 134 YPLDVDKMREAAEYLIGSHDFTSFCAA--NTEVQDKVRVIYALEWKNVSDGLEMRVRGSG 191
Query: 187 FLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
FLY VR MA L++IG P+ I+ +LA+R+R+ K AP HGL L + Y+
Sbjct: 192 FLYNMVRIMAGTLLEIGAGKFHPEEIKAMLAARNREAAGKT---APSHGLYLWEVFYD 246
>F0DP17_9FIRM (tr|F0DP17) tRNA pseudouridine synthase A OS=Desulfotomaculum
nigrificans DSM 574 GN=truA PE=3 SV=1
Length = 249
Score = 173 bits (439), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 98/239 (41%), Positives = 138/239 (57%), Gaps = 10/239 (4%)
Query: 7 GWQYQMSP--PTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYD 64
G+Q Q TVQ V+E AL+ K+ + + ++GA RTDAGVHA GQV +F +
Sbjct: 19 GFQEQRGTGLATVQEVLEAALS---KVANETVQVIGAGRTDAGVHARGQVVNFRSTNWPV 75
Query: 65 KLEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYH 124
E IH A+N LLP DI V + VP +FHARFSA +K Y Y IYN +M P R +AYH
Sbjct: 76 PTEKIHLAVNSLLPDDIAVIKAEEVPLDFHARFSATAKTYRYSIYNHRVMSPLHRLYAYH 135
Query: 125 SPYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEG 184
P L+ MR+AAQY +G H+F +F + V D V+ I+R ++ L+ L + G
Sbjct: 136 EPRPLDIEAMRQAAQYLLGTHDFKSF--QAQGTPVKDTVRTIYRAELVSEPPLIHLYLRG 193
Query: 185 SGFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINY 243
+GFLY VR + L+ +GK P ++ I+ +R+R + PPHGLCL+ + Y
Sbjct: 194 NGFLYNMVRIITGTLLDVGKGKKSPPEMKSIIEARNR---TRAGTTVPPHGLCLMEVEY 249
>I4VBL7_9BACI (tr|I4VBL7) tRNA pseudouridine synthase A OS=Bacillus sp. M 2-6
GN=truA PE=3 SV=1
Length = 247
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 141/238 (59%), Gaps = 7/238 (2%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDKL 66
G+Q Q T+Q +E AL R K Q + + +V + RTD+GVHA GQV HF TP +
Sbjct: 16 GYQVQPGQRTIQTEIESALARMHK-QDELIPIVASGRTDSGVHAKGQVIHFDTPLAI-PM 73
Query: 67 EDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHSP 126
E ALN LLP DIRV + V E FHARFS SK Y YK+ +T + F R +A H P
Sbjct: 74 ERWPFALNSLLPDDIRVLKAEEVDESFHARFSVVSKEYRYKVSTETHQNVFTRQYACHFP 133
Query: 127 YKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGSG 186
Y+L++ MREAA + +G H+F++F A N V D V+ I+ + K + L++ V G+G
Sbjct: 134 YRLDADKMREAAGHLIGIHDFTSFCAA--NTEVQDKVREIYTLEWKNVSDGLEMRVRGNG 191
Query: 187 FLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
FLY VR +A L++IG P+ I+ +LA+R+R+ K AP HGL L + Y+
Sbjct: 192 FLYNMVRIIAGTLLEIGSGKFHPEEIKAMLAARNREAAGKT---APSHGLYLWEVFYD 246
>F6B5S6_DESCC (tr|F6B5S6) tRNA pseudouridine synthase A OS=Desulfotomaculum
carboxydivorans (strain DSM 14880 / VKM B-2319 /
CO-1-SRB) GN=truA PE=3 SV=1
Length = 249
Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 98/239 (41%), Positives = 138/239 (57%), Gaps = 10/239 (4%)
Query: 7 GWQYQMSP--PTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYD 64
G+Q Q TVQ V+E AL+ K+ + + ++GA RTDAGVHA GQV +F +
Sbjct: 19 GFQEQRGTGLATVQEVLEAALS---KVANETVQVIGAGRTDAGVHARGQVVNFRSTNWPV 75
Query: 65 KLEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYH 124
E IH A+N LLP DI V + VP +FHARFSA +K Y Y IYN +M P R +AYH
Sbjct: 76 PTEKIHLAVNSLLPDDIAVIKAEEVPLDFHARFSATAKTYRYSIYNHRVMSPLHRLYAYH 135
Query: 125 SPYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEG 184
P L+ MR+AAQY +G H+F +F + V D V+ I+R ++ L+ L + G
Sbjct: 136 EPRPLDIEAMRQAAQYLLGTHDFKSF--QAQGTPVKDTVRTIYRAELVSEPPLIHLYLRG 193
Query: 185 SGFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINY 243
+GFLY VR + L+ +GK P ++ I+ +R+R + PPHGLCL+ + Y
Sbjct: 194 NGFLYNMVRIITGTLLDVGKGKKFPPEMKSIIEARNR---TRAGTTVPPHGLCLMEVEY 249
>R7RU36_9CLOT (tr|R7RU36) tRNA pseudouridine synthase A OS=Thermobrachium celere
DSM 8682 GN=TCEL_01072 PE=4 SV=1
Length = 244
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 94/239 (39%), Positives = 139/239 (58%), Gaps = 13/239 (5%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFV--TPFNYD 64
GWQ Q + ++ V+E A+ + TK + + L+G+ RTDAGVHA GQVA+F+ T D
Sbjct: 17 GWQKQKNGLSISEVIENAIFKITK---QSVNLIGSGRTDAGVHARGQVANFLIETKIPAD 73
Query: 65 KLEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYH 124
KL+D A+N LPSDI + V E FHAR+S+K K Y Y I N PF +A H
Sbjct: 74 KLKD---AINSKLPSDISIISSEEVDESFHARYSSKGKWYSYTILNRVEPSPFYNKYAAH 130
Query: 125 SPYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEG 184
YKL+ M +A++Y +G+H+F+AF S V V+ I++ D+ + G +++L+ EG
Sbjct: 131 IKYKLDLDKMIKASKYLIGQHDFAAF--KSEGSSVKTTVRTIYKIDINKDGDIIRLDFEG 188
Query: 185 SGFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINY 243
GFLY VR + L+ +G+ + + +Q IL S+DR+ AP GLCL + Y
Sbjct: 189 DGFLYNMVRIITGTLIDVGRGKIQTEDVQKILNSKDRRNA---GFTAPACGLCLEKVYY 244
>C1ECC9_MICSR (tr|C1ECC9) tRNA pseudouridine synthase (Fragment) OS=Micromonas
sp. (strain RCC299 / NOUM17) GN=MICPUN_71216 PE=3 SV=1
Length = 253
Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 103/238 (43%), Positives = 139/238 (58%), Gaps = 9/238 (3%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDKL 66
G+QYQ TVQ VERALT+ T R+ L + + RTD GVHA GQ+ HF T L
Sbjct: 16 GFQYQPKGKTVQGEVERALTKLTGHDREFLGMQASGRTDTGVHARGQILHFYTKEPVSDL 75
Query: 67 EDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHSP 126
E H +LNG++P D+R E+ FHARF A K YHY + ++DPF R A H
Sbjct: 76 ERFHKSLNGIMPKDVRCVEVMRPHPAFHARFHAVRKTYHYFLDPRLVLDPFVRRHALHCG 135
Query: 127 YKLNSAV-MREAAQYYVGKHNFSAFANASHNDG-VPDPVKHIFRFDVKEM-GALLQLEVE 183
+K S +REAA +VG H+F++F+N S + V P + I+RFDV E L++LEVE
Sbjct: 136 WKPPSVERLREAAAVFVGTHDFTSFSNKSRDKTLVRSPTRTIYRFDVVEQPDGLIRLEVE 195
Query: 184 GSGFLYRQVRNM--AALLVQIGKEA-LPPDIIQHILASRDRKELAKYALFAPPHGLCL 238
G+GFLYR VRNM A +L G++ + ++ +L +DR + APPHGL L
Sbjct: 196 GNGFLYRMVRNMVGALMLAATGEDGKFTAEDLRDMLEGKDR---GVAPMGAPPHGLFL 250
>F8LB99_9CHLA (tr|F8LB99) tRNA pseudouridine synthase A OS=Waddlia chondrophila
2032/99 GN=truA1 PE=3 SV=1
Length = 254
Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 98/241 (40%), Positives = 139/241 (57%), Gaps = 12/241 (4%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVT--PFNY 63
SGWQ Q + ++Q V+E L TK + L GA RTDAGVHA GQVAHF PFN
Sbjct: 16 SGWQMQPNALSIQEVLEEKLKVLTKTR---TSLTGAGRTDAGVHAIGQVAHFKVEAPFNP 72
Query: 64 DKLEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAY 123
L L LP DIR+ ++ VP +FHAR+SA +KIY+Y + + DPF++ +++
Sbjct: 73 SLLRLSLNGL---LPKDIRIMDVEEVPLDFHARYSATNKIYYYHLNLGPVQDPFEKQYSW 129
Query: 124 HSPYKLNSAVMREAAQYYVGKHNFSAFAN-ASHNDGVPDPVKHIFRFDVKEMGALLQLEV 182
+ LN ++++ Y +G HNFSAFAN A+ +P++ + R V ++LE
Sbjct: 130 NITNSLNMELLKKGISYLIGTHNFSAFANEANQGAAKKNPIRTLKRISVVPERIGMRLEF 189
Query: 183 EGSGFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSIN 242
EG FLY+ VRNM L+ + K L P+ I+ IL S+DR+ + AP GL LV I+
Sbjct: 190 EGESFLYKMVRNMTGTLIDVAKGKLSPEEIKKILESKDRRNAGRA---APAKGLFLVRID 246
Query: 243 Y 243
Y
Sbjct: 247 Y 247
>D6YUD5_WADCW (tr|D6YUD5) tRNA pseudouridine synthase A OS=Waddlia chondrophila
(strain ATCC VR-1470 / WSU 86-1044) GN=truA1 PE=3 SV=1
Length = 254
Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 98/241 (40%), Positives = 139/241 (57%), Gaps = 12/241 (4%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVT--PFNY 63
SGWQ Q + ++Q V+E L TK + L GA RTDAGVHA GQVAHF PFN
Sbjct: 16 SGWQMQPNALSIQEVLEEKLKVLTKTR---TSLTGAGRTDAGVHAIGQVAHFKVEAPFNP 72
Query: 64 DKLEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAY 123
L L LP DIR+ ++ VP +FHAR+SA +KIY+Y + + DPF++ +++
Sbjct: 73 SLLRLSLNGL---LPKDIRIMDVEEVPLDFHARYSATNKIYYYHLNLGPVQDPFEKQYSW 129
Query: 124 HSPYKLNSAVMREAAQYYVGKHNFSAFAN-ASHNDGVPDPVKHIFRFDVKEMGALLQLEV 182
+ LN ++++ Y +G HNFSAFAN A+ +P++ + R V ++LE
Sbjct: 130 NITNSLNMELLKKGISYLIGTHNFSAFANEANQGAAKKNPIRTLKRISVVPERIGMRLEF 189
Query: 183 EGSGFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSIN 242
EG FLY+ VRNM L+ + K L P+ I+ IL S+DR+ + AP GL LV I+
Sbjct: 190 EGESFLYKMVRNMTGTLIDVAKGKLSPEEIKKILESKDRRNAGRA---APAKGLFLVRID 246
Query: 243 Y 243
Y
Sbjct: 247 Y 247
>M5R6T6_9BACI (tr|M5R6T6) Trna pseudouridine synthase a OS=Bacillus
stratosphericus LAMA 585 GN=C883_169 PE=4 SV=1
Length = 247
Score = 170 bits (430), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 139/238 (58%), Gaps = 7/238 (2%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDKL 66
G+Q Q TVQ +E AL R K Q + + +V + RTD+GVHA GQV HF TP +
Sbjct: 16 GYQVQPGQRTVQTEIESALARMHK-QDELIPIVASGRTDSGVHAKGQVIHFDTPLAI-PM 73
Query: 67 EDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHSP 126
E ALN LLP DIRV + V E FHARFS SK Y YK+ +T + F R +A H P
Sbjct: 74 ERWPFALNSLLPDDIRVLKAEKVDESFHARFSVVSKEYRYKVSTETHQNVFTRQYACHYP 133
Query: 127 YKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGSG 186
Y L+ M+EAA + +G H+F++F A N V D V+ I+ + K + L++ V G+G
Sbjct: 134 YPLDVDKMKEAAGHLIGTHDFTSFCAA--NTEVQDKVREIYTLEWKNVSDGLEMRVRGNG 191
Query: 187 FLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
FLY VR +A L++IG P+ I+ +LA+R+R+ K AP HGL L + Y+
Sbjct: 192 FLYNMVRIIAGTLLEIGSGKFHPEEIKAMLAARNREAAGKT---APSHGLYLWEVFYD 246
>C9R8G0_AMMDK (tr|C9R8G0) tRNA pseudouridine synthase A OS=Ammonifex degensii
(strain DSM 10501 / KC4) GN=truA PE=3 SV=1
Length = 259
Score = 170 bits (430), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 102/241 (42%), Positives = 133/241 (55%), Gaps = 11/241 (4%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLV-GASRTDAGVHAWGQVAHFVTPFNYD 64
SG+Q Q TVQ V+E AL R TK + C V GA RTDAGVHA GQV F T +
Sbjct: 18 SGFQRQPGLRTVQGVLEEALARLTK----ETCQVKGAGRTDAGVHAEGQVVSFRTASSIP 73
Query: 65 KLEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYH 124
+ ALNGLLP D+ V + VPE+FH R+ A SK+Y Y + + P R +A H
Sbjct: 74 T-PRLVPALNGLLPPDVAVLAAAEVPEQFHPRYDAVSKVYRYTFFRRAVRCPLTRFYALH 132
Query: 125 SPYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEG 184
P L+ MREAA Y G+H+F AF N V V+ +F ++E G L +E
Sbjct: 133 VPEPLDVERMREAAAYLGGRHDFRAFQNTGRP--VKSSVRTVFSCRLEEAGPFLYFWIEA 190
Query: 185 SGFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
GFLY+ VR +A L++IG+ L P +I L +R+ L APPHGLCLV + Y
Sbjct: 191 DGFLYQMVRVIAGTLLEIGRGKLEPSVILAALEKGERQLLGPT---APPHGLCLVQVKYP 247
Query: 245 E 245
+
Sbjct: 248 Q 248
>I4C033_DESTA (tr|I4C033) tRNA pseudouridine synthase A OS=Desulfomonile tiedjei
(strain ATCC 49306 / DSM 6799 / DCB-1) GN=truA PE=3 SV=1
Length = 246
Score = 169 bits (429), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 98/239 (41%), Positives = 129/239 (53%), Gaps = 11/239 (4%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDKL 66
GWQ Q S PTVQ +E AL+R + + + GA RTDAGVHA GQVAHF +N L
Sbjct: 17 GWQLQKSLPTVQGALEGALSRILTVPVR---VHGAGRTDAGVHATGQVAHFSADWN-KSL 72
Query: 67 EDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHSP 126
E + A N LLP D+ VR + PE+FHAR SA+SK Y Y I N + RH+ +H P
Sbjct: 73 EALQKACNALLPPDVVVRNLVSAPEDFHARHSAQSKTYVYTILNGPLRCALNRHYTWHIP 132
Query: 127 YKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFR--FDVKEMGALLQLEVEG 184
+ L+ M+ AA+ G H+F+AF S +G P V+ I + LQ + G
Sbjct: 133 FSLDVDAMKHAAKLLEGTHDFAAF--GSPTEGTPSTVRRILSAHWSNGNSSDTLQFTIIG 190
Query: 185 SGFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINY 243
+GFL VR++ LV +G + P IL S DR + APPHGLCL + Y
Sbjct: 191 TGFLRYMVRSLVGTLVPVGAGKIDPTAFGKILESCDRSQSGPT---APPHGLCLALVEY 246
>R7JVK9_9FIRM (tr|R7JVK9) tRNA pseudouridine synthase A 2 OS=Blautia sp. CAG:37
GN=BN630_00355 PE=4 SV=1
Length = 250
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 100/239 (41%), Positives = 137/239 (57%), Gaps = 9/239 (3%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDKL 66
GWQ Q + TVQ V+ +AL+ L K + +GASRTDAGVHA G VA F T
Sbjct: 17 GWQVQPNGITVQEVLNQALS---DLFAKKIACIGASRTDAGVHALGNVAVFDTDARM-PA 72
Query: 67 EDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHSP 126
+ I ALN LP+DIR++ S VP +FH RF+A K Y Y+I N T DP +R +Y
Sbjct: 73 DRIAFALNTRLPADIRIQGSSEVPPDFHPRFTATVKTYEYRILNRTFADPTRRLNSYFWY 132
Query: 127 YKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGSG 186
L+ MR+AA Y VG H+F +FA A V D V+ I+ +++ L++ + G+G
Sbjct: 133 GPLDVDAMRQAASYLVGTHDFKSFATAKPE--VTDTVRTIYETSLEKEDDLIRFRITGNG 190
Query: 187 FLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYNE 245
FLY VR + L+++GK PP+ ++ ILA++DRK A P GL LV I Y E
Sbjct: 191 FLYNMVRIITGTLLEVGKGDYPPEKVKEILAAKDRKTAGATAR---PEGLTLVQIRYPE 246
>G4F0V5_BACIU (tr|G4F0V5) tRNA pseudouridine synthase A OS=Bacillus subtilis
subsp. subtilis str. SC-8 GN=truA PE=3 SV=1
Length = 247
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 97/239 (40%), Positives = 140/239 (58%), Gaps = 7/239 (2%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDK 65
+G+Q Q TVQ +E+AL K + + + +V + RTD+GVHA GQV HF TP +
Sbjct: 15 NGYQVQPGKRTVQDELEKALAVLHKSKDR-IPVVSSGRTDSGVHAAGQVIHFDTPLSI-P 72
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
E ALN LLP DI V++ + FHARFSA K Y Y +Y + D F+RH+AYH
Sbjct: 73 AERWPYALNALLPDDIAVKQAEIADDGFHARFSAVKKEYRYFVYTEKHPDVFKRHYAYHF 132
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
Y+LN MREAA++ +G H+F++F A V D V+ I+ D E LQ+ + GS
Sbjct: 133 SYRLNVQDMREAAKHLIGTHDFTSFCAAKTE--VQDKVRTIYELDWTETADGLQMRITGS 190
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
GFLY VR +A L+ +G + PD ++ +L ++DR+ + AP HGL L ++ Y+
Sbjct: 191 GFLYNMVRIIAGTLLDVGIGKISPDEVKSMLEAKDREAAGR---TAPGHGLYLWNVYYD 246
>M1Z1W5_9BACT (tr|M1Z1W5) tRNA pseudouridine synthase A OS=Nitrospina gracilis
3/211 GN=truA PE=3 SV=1
Length = 258
Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 99/239 (41%), Positives = 134/239 (56%), Gaps = 9/239 (3%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDKL 66
GWQYQ + T+Q V+E+ L T K +VG+ RTD+GVHA GQVAHF T N
Sbjct: 17 GWQYQPNGITIQEVLEKRLETITG---KKTPVVGSGRTDSGVHAEGQVAHFNTASNMTPR 73
Query: 67 EDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHSP 126
+ + A LN LLP DI VR + V +FHAR SAK KIY Y + N + A++
Sbjct: 74 QFLKA-LNSLLPHDIVVRAVEEVDSDFHARKSAKRKIYRYTLLNRDYPSALRCRQAHYVA 132
Query: 127 YKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGSG 186
L MR+AA++ VGKHNF +F A V+ I +K+ G ++ V+GSG
Sbjct: 133 QPLKVTAMRKAARHLVGKHNFKSFQGAGCE--AKSAVREIHDLSIKKRGDWIEFSVDGSG 190
Query: 187 FLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYNE 245
FL VRN+ L+++G + PD I+ IL +RDRK K AP GLCLV + Y++
Sbjct: 191 FLKHMVRNLVGTLIEVGYGRIEPDDIKAILKARDRK---KAGPTAPARGLCLVEVFYDK 246
>B9XDA1_9BACT (tr|B9XDA1) tRNA pseudouridine synthase A OS=Pedosphaera parvula
Ellin514 GN=truA PE=3 SV=1
Length = 270
Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 101/249 (40%), Positives = 135/249 (54%), Gaps = 9/249 (3%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDK 65
SGWQ Q S VQ VE ALT KL + +SRTD GVHA G VAH P +
Sbjct: 18 SGWQVQKSGIGVQQRVEEALT---KLFPSVGRIHSSSRTDTGVHAIGMVAHMEIPKAEFR 74
Query: 66 L--EDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAY 123
+ E + A+N LP DIRV V +FHARF A K Y Y ++N T M+P R A+
Sbjct: 75 MTSEKLALAINAHLPEDIRVMSAQKVAADFHARFDAAGKQYRYFVWNQTAMNPLLREQAW 134
Query: 124 HSPYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVE 183
P +L+ MR AA+ + GKH+F +FA AS N V V+ + R D+K+ G+LL +E
Sbjct: 135 QVPKELDLKAMRSAAKLFPGKHDFRSFA-ASRNYEVESTVRTLARCDIKKSGSLLTFIIE 193
Query: 184 GSGFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINY 243
G GFLY+ R + LVQ+G+ + I+ IL +RDR+ + AP HGL L + Y
Sbjct: 194 GDGFLYKMCRGIVGTLVQVGQGKIAAADIKKILETRDRRVA---GMTAPAHGLVLWKVFY 250
Query: 244 NESHLLPPP 252
+ P
Sbjct: 251 KSKAKVSVP 259
>H2AB94_BACAM (tr|H2AB94) tRNA pseudouridine synthase A OS=Bacillus
amyloliquefaciens subsp. plantarum CAU B946 GN=truA PE=3
SV=1
Length = 247
Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 96/239 (40%), Positives = 138/239 (57%), Gaps = 7/239 (2%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDK 65
+G+Q Q TVQ +E+AL K + + ++ + RTD+ VHA GQV HF TP +
Sbjct: 15 NGYQVQPGKRTVQSELEKALAVIHKTDGR-VPVISSGRTDSDVHAAGQVIHFDTPLSI-P 72
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
E ALN LLP DI V+ + FHARFSA K Y Y +Y + D F+RH+AYH
Sbjct: 73 AEKWPFALNALLPDDIAVKTAEIADDGFHARFSAVQKEYRYFVYTEKHPDVFKRHYAYHF 132
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
Y+LN MREA+++ +GKH+F++F A + V D V+ I+ D E G LQ+ + G+
Sbjct: 133 AYQLNVQKMREASRHLIGKHDFTSFCAA--DTAVQDKVRTIYELDWTETGDGLQMRITGN 190
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
GFLY VR +A L+ G PD ++ +L ++DR+ + AP HGL L S+ Y+
Sbjct: 191 GFLYNMVRIIAGTLLDTGAGKFSPDDVKAMLEAKDREAAGRT---APGHGLYLWSVCYD 246
>I0K114_9BACT (tr|I0K114) tRNA pseudouridine synthase A OS=Methylacidiphilum
fumariolicum SolV GN=truA PE=3 SV=1
Length = 257
Score = 167 bits (422), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 103/251 (41%), Positives = 143/251 (56%), Gaps = 15/251 (5%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDKL 66
GWQ Q PTVQ +E A+ K+ + ++ + GASRTDAGVHA GQVA F+ P +
Sbjct: 21 GWQKQGQLPTVQRFLEEAVA---KIWQTEIHIEGASRTDAGVHAKGQVASFIAPRKLEA- 76
Query: 67 EDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHSP 126
E + ALN LP IRV I V +EFHARF A SK Y Y I+ND +MDPF A+H P
Sbjct: 77 EVLQRALNYYLPETIRVLHIRVVSKEFHARFHAISKTYQYWIWNDPVMDPFYLWRAWHIP 136
Query: 127 YKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGSG 186
+L+ M EAA +VGK +F++F +S + D ++ +F G L ++ +G
Sbjct: 137 RQLDLQSMNEAATLFVGKKDFASFV-SSPGFVLKDTIRTVFDCGFTVQGQLCLFTIKANG 195
Query: 187 FLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYNES 246
FLYR VRN+ LV+IG L + ++ I S++RK L+ + APP GL L+ ++Y
Sbjct: 196 FLYRMVRNIVGALVKIGLGRLDLEKLKDIFESKNRK-LSPAS--APPWGLYLLKVDY--- 249
Query: 247 HLLPPPGCPAN 257
PP N
Sbjct: 250 ----PPDLETN 256
>I3IQP0_9PLAN (tr|I3IQP0) tRNA pseudouridine synthase A OS=planctomycete KSU-1
GN=truA PE=3 SV=1
Length = 246
Score = 167 bits (422), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 89/240 (37%), Positives = 142/240 (59%), Gaps = 9/240 (3%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDK 65
+GWQ+Q + T+Q + A+ +A + Q K L GASRTDAGVHA+GQVA+F T +
Sbjct: 16 AGWQWQKNEKTIQETLTGAIEQAIQEQIK---LYGASRTDAGVHAFGQVANFKTISDIPP 72
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
E + A+N LP DI V++++ VPE FHA++ AKSKIY Y ++ND I R+F Y
Sbjct: 73 -ERLLLAINFYLPCDITVKKVTDVPESFHAQYGAKSKIYQYTLFNDWIRTSLNRYFCYLY 131
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
+ ++ + AA++ +G H+F++F + + D ++ I DVK+ G + +E
Sbjct: 132 GFHMDMNKIVTAARHLIGTHDFTSFTTKARYE--KDRIRTIKSLDVKKEGKYIYFTIEAD 189
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYNE 245
GFLY VR + L++IG+ + + I+ IL +++RK AP GLCL+ + Y++
Sbjct: 190 GFLYNMVRTIVGTLIEIGRGKIMVESIKDILDAKNRKAAGPT---APAKGLCLMEVKYDD 246
>M4X5M1_BACIU (tr|M4X5M1) tRNA pseudouridine synthase A OS=Bacillus subtilis
subsp. subtilis str. BAB-1 GN=truA PE=4 SV=1
Length = 247
Score = 166 bits (421), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 97/239 (40%), Positives = 139/239 (58%), Gaps = 7/239 (2%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDK 65
+G+Q Q TVQ +E+AL K + + + +V + RTD+GVHA GQV HF TP +
Sbjct: 15 NGYQVQPGKRTVQDELEKALAVLHKSKDR-IPVVSSGRTDSGVHAAGQVIHFDTPLSIPA 73
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
HA LN LLP DI V++ + FHARFSA K Y Y +Y + D F+RH+AYH
Sbjct: 74 ERWPHA-LNALLPDDIAVKQAEIADDGFHARFSAVKKEYRYFVYTEKHPDVFKRHYAYHF 132
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
Y+LN MREAA++ +G H+F++F A V D V+ I+ D E LQ+ + GS
Sbjct: 133 SYRLNVQDMREAAKHLIGTHDFTSFCAAKTE--VQDKVRTIYELDWTETADGLQMRITGS 190
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
GFLY VR +A L+ G + PD ++ +L ++DR+ + AP HGL L ++ Y+
Sbjct: 191 GFLYNMVRIIAGTLLDAGIGKISPDEVKSMLEAKDREAAGRT---APGHGLYLWNVYYD 246
>M4KMF2_BACIU (tr|M4KMF2) tRNA pseudouridine synthase A OS=Bacillus subtilis XF-1
GN=truA PE=4 SV=1
Length = 247
Score = 166 bits (421), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 97/239 (40%), Positives = 139/239 (58%), Gaps = 7/239 (2%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDK 65
+G+Q Q TVQ +E+AL K + + + +V + RTD+GVHA GQV HF TP +
Sbjct: 15 NGYQVQPGKRTVQDELEKALAVLHKSKDR-IPVVSSGRTDSGVHAAGQVIHFDTPLSIPA 73
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
HA LN LLP DI V++ + FHARFSA K Y Y +Y + D F+RH+AYH
Sbjct: 74 ERWPHA-LNALLPDDIAVKQAEIADDGFHARFSAVKKEYRYFVYTEKHPDVFKRHYAYHF 132
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
Y+LN MREAA++ +G H+F++F A V D V+ I+ D E LQ+ + GS
Sbjct: 133 SYRLNVQDMREAAKHLIGTHDFTSFCAAKTE--VQDKVRTIYELDWTETADGLQMRITGS 190
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
GFLY VR +A L+ G + PD ++ +L ++DR+ + AP HGL L ++ Y+
Sbjct: 191 GFLYNMVRIIAGTLLDAGIGKISPDEVKSMLEAKDREAAGRT---APGHGLYLWNVYYD 246
>G4P985_BACIU (tr|G4P985) tRNA pseudouridine synthase A OS=Bacillus subtilis
subsp. subtilis str. RO-NN-1 GN=truA PE=3 SV=1
Length = 247
Score = 166 bits (421), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 97/239 (40%), Positives = 139/239 (58%), Gaps = 7/239 (2%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDK 65
+G+Q Q TVQ +E+AL K + + + +V + RTD+GVHA GQV HF TP +
Sbjct: 15 NGYQVQPGKRTVQDELEKALAVLHKSKDR-IPVVSSGRTDSGVHAAGQVIHFDTPLSI-P 72
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
E ALN LLP DI V++ + FHARFSA K Y Y +Y + D F+RH+AYH
Sbjct: 73 AERWPYALNALLPDDIAVKQAEIADDGFHARFSAVKKEYRYFVYTEKHPDVFKRHYAYHF 132
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
Y+LN MREAA++ +G H+F++F A V D V+ I+ D E LQ+ + GS
Sbjct: 133 SYRLNVQDMREAAKHLIGTHDFTSFCAAKTE--VQDKVRTIYELDWTETADGLQMRITGS 190
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
GFLY VR +A L+ G + PD ++ +L ++DR+ + AP HGL L ++ Y+
Sbjct: 191 GFLYNMVRIIAGTLLDAGIGKISPDDVKSMLEAKDREAAGR---TAPGHGLYLWNVYYD 246
>E8VIK0_BACST (tr|E8VIK0) tRNA pseudouridine synthase A OS=Bacillus subtilis
(strain BSn5) GN=truA PE=3 SV=1
Length = 247
Score = 166 bits (421), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 97/239 (40%), Positives = 139/239 (58%), Gaps = 7/239 (2%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDK 65
+G+Q Q TVQ +E+AL K + + + +V + RTD+GVHA GQV HF TP +
Sbjct: 15 NGYQVQPGKRTVQDELEKALAVLHKSKDR-IPVVSSGRTDSGVHAAGQVIHFDTPLSI-P 72
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
E ALN LLP DI V++ + FHARFSA K Y Y +Y + D F+RH+AYH
Sbjct: 73 AERWPYALNALLPDDIAVKQAEIADDGFHARFSAVKKEYRYFVYTEKHPDVFKRHYAYHF 132
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
Y+LN MREAA++ +G H+F++F A V D V+ I+ D E LQ+ + GS
Sbjct: 133 SYRLNVQDMREAAKHLIGTHDFTSFCAAKTE--VQDKVRTIYELDWTETADGLQMRITGS 190
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
GFLY VR +A L+ G + PD ++ +L ++DR+ + AP HGL L ++ Y+
Sbjct: 191 GFLYNMVRIIAGTLLDAGIGKISPDEVKSMLEAKDREAAGR---TAPGHGLYLWNVYYD 246
>N0D8Q9_BACIU (tr|N0D8Q9) tRNA pseudouridine synthase A OS=Bacillus subtilis
BEST7003 GN=truA PE=4 SV=1
Length = 247
Score = 166 bits (421), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 97/239 (40%), Positives = 139/239 (58%), Gaps = 7/239 (2%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDK 65
+G+Q Q TVQ +E+AL K + + + +V + RTD+GVHA GQV HF TP +
Sbjct: 15 NGYQVQPGKRTVQDELEKALAVLHKSKDR-IPVVSSGRTDSGVHAAGQVIHFDTPLSI-P 72
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
E ALN LLP DI V++ + FHARFSA K Y Y +Y + D F+RH+AYH
Sbjct: 73 AERWPYALNALLPDDIAVKQAEIADDGFHARFSAVKKEYRYFVYTEKHPDVFKRHYAYHF 132
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
Y+LN MREAA++ +G H+F++F A V D V+ I+ D E LQ+ + GS
Sbjct: 133 SYRLNVQDMREAAKHLIGTHDFTSFCAAKTE--VQDKVRTIYELDWTETADGLQMRITGS 190
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
GFLY VR +A L+ G + PD ++ +L ++DR+ + AP HGL L ++ Y+
Sbjct: 191 GFLYNMVRIIAGTLLDAGIGKISPDEVKSMLEAKDREAAGR---TAPGHGLYLWNVYYD 246
>M2VZ91_BACIU (tr|M2VZ91) tRNA pseudouridine synthase A OS=Bacillus subtilis
MB73/2 GN=truA PE=3 SV=1
Length = 247
Score = 166 bits (421), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 97/239 (40%), Positives = 139/239 (58%), Gaps = 7/239 (2%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDK 65
+G+Q Q TVQ +E+AL K + + + +V + RTD+GVHA GQV HF TP +
Sbjct: 15 NGYQVQPGKRTVQDELEKALAVLHKSKDR-IPVVSSGRTDSGVHAAGQVIHFDTPLSI-P 72
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
E ALN LLP DI V++ + FHARFSA K Y Y +Y + D F+RH+AYH
Sbjct: 73 AERWPYALNALLPDDIAVKQAEIADDGFHARFSAVKKEYRYFVYTEKHPDVFKRHYAYHF 132
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
Y+LN MREAA++ +G H+F++F A V D V+ I+ D E LQ+ + GS
Sbjct: 133 SYRLNVQDMREAAKHLIGTHDFTSFCAAKTE--VQDKVRTIYELDWTETADGLQMRITGS 190
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
GFLY VR +A L+ G + PD ++ +L ++DR+ + AP HGL L ++ Y+
Sbjct: 191 GFLYNMVRIIAGTLLDAGIGKISPDEVKSMLEAKDREAAGR---TAPGHGLYLWNVYYD 246
>M1UBX6_BACIU (tr|M1UBX6) tRNA pseudouridine synthase A OS=Bacillus subtilis
subsp. subtilis 6051-HGW GN=truA PE=3 SV=1
Length = 247
Score = 166 bits (421), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 97/239 (40%), Positives = 139/239 (58%), Gaps = 7/239 (2%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDK 65
+G+Q Q TVQ +E+AL K + + + +V + RTD+GVHA GQV HF TP +
Sbjct: 15 NGYQVQPGKRTVQDELEKALAVLHKSKDR-IPVVSSGRTDSGVHAAGQVIHFDTPLSI-P 72
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
E ALN LLP DI V++ + FHARFSA K Y Y +Y + D F+RH+AYH
Sbjct: 73 AERWPYALNALLPDDIAVKQAEIADDGFHARFSAVKKEYRYFVYTEKHPDVFKRHYAYHF 132
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
Y+LN MREAA++ +G H+F++F A V D V+ I+ D E LQ+ + GS
Sbjct: 133 SYRLNVQDMREAAKHLIGTHDFTSFCAAKTE--VQDKVRTIYELDWTETADGLQMRITGS 190
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
GFLY VR +A L+ G + PD ++ +L ++DR+ + AP HGL L ++ Y+
Sbjct: 191 GFLYNMVRIIAGTLLDAGIGKISPDEVKSMLEAKDREAAGR---TAPGHGLYLWNVYYD 246
>L8AC68_BACIU (tr|L8AC68) tRNA pseudouridine synthase A OS=Bacillus subtilis
BEST7613 GN=truA PE=3 SV=1
Length = 247
Score = 166 bits (421), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 97/239 (40%), Positives = 139/239 (58%), Gaps = 7/239 (2%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDK 65
+G+Q Q TVQ +E+AL K + + + +V + RTD+GVHA GQV HF TP +
Sbjct: 15 NGYQVQPGKRTVQDELEKALAVLHKSKDR-IPVVSSGRTDSGVHAAGQVIHFDTPLSI-P 72
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
E ALN LLP DI V++ + FHARFSA K Y Y +Y + D F+RH+AYH
Sbjct: 73 AERWPYALNALLPDDIAVKQAEIADDGFHARFSAVKKEYRYFVYTEKHPDVFKRHYAYHF 132
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
Y+LN MREAA++ +G H+F++F A V D V+ I+ D E LQ+ + GS
Sbjct: 133 SYRLNVQDMREAAKHLIGTHDFTSFCAAKTE--VQDKVRTIYELDWTETADGLQMRITGS 190
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
GFLY VR +A L+ G + PD ++ +L ++DR+ + AP HGL L ++ Y+
Sbjct: 191 GFLYNMVRIIAGTLLDAGIGKISPDEVKSMLEAKDREAAGR---TAPGHGLYLWNVYYD 246
>L0CWB5_BACIU (tr|L0CWB5) tRNA pseudouridine synthase A OS=Bacillus subtilis
subsp. subtilis str. BSP1 GN=truA PE=3 SV=1
Length = 247
Score = 166 bits (421), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 97/239 (40%), Positives = 139/239 (58%), Gaps = 7/239 (2%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDK 65
+G+Q Q TVQ +E+AL K + + + +V + RTD+GVHA GQV HF TP +
Sbjct: 15 NGYQVQPGKRTVQDELEKALAVLHKSKDR-IPVVSSGRTDSGVHAAGQVIHFDTPLSI-P 72
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
E ALN LLP DI V++ + FHARFSA K Y Y +Y + D F+RH+AYH
Sbjct: 73 AERWPYALNALLPDDIAVKQAEIADDGFHARFSAVKKEYRYFVYTEKHPDVFKRHYAYHF 132
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
Y+LN MREAA++ +G H+F++F A V D V+ I+ D E LQ+ + GS
Sbjct: 133 SYRLNVQDMREAAKHLIGTHDFTSFCAAKTE--VQDKVRTIYELDWTETADGLQMRITGS 190
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
GFLY VR +A L+ G + PD ++ +L ++DR+ + AP HGL L ++ Y+
Sbjct: 191 GFLYNMVRIIAGTLLDAGIGKISPDEVKSMLEAKDREAAGR---TAPGHGLYLWNVYYD 246
>J7JU27_BACIU (tr|J7JU27) tRNA pseudouridine synthase A OS=Bacillus subtilis
QB928 GN=truA PE=3 SV=1
Length = 247
Score = 166 bits (421), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 97/239 (40%), Positives = 139/239 (58%), Gaps = 7/239 (2%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDK 65
+G+Q Q TVQ +E+AL K + + + +V + RTD+GVHA GQV HF TP +
Sbjct: 15 NGYQVQPGKRTVQDELEKALAVLHKSKDR-IPVVSSGRTDSGVHAAGQVIHFDTPLSI-P 72
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
E ALN LLP DI V++ + FHARFSA K Y Y +Y + D F+RH+AYH
Sbjct: 73 AERWPYALNALLPDDIAVKQAEIADDGFHARFSAVKKEYRYFVYTEKHPDVFKRHYAYHF 132
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
Y+LN MREAA++ +G H+F++F A V D V+ I+ D E LQ+ + GS
Sbjct: 133 SYRLNVQDMREAAKHLIGTHDFTSFCAAKTE--VQDKVRTIYELDWTETADGLQMRITGS 190
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
GFLY VR +A L+ G + PD ++ +L ++DR+ + AP HGL L ++ Y+
Sbjct: 191 GFLYNMVRIIAGTLLDAGIGKISPDEVKSMLEAKDREAAGR---TAPGHGLYLWNVYYD 246
>D4G4D9_BACNA (tr|D4G4D9) tRNA pseudouridine synthase A OS=Bacillus subtilis
subsp. natto BEST195 GN=truA PE=3 SV=1
Length = 247
Score = 166 bits (421), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 97/239 (40%), Positives = 139/239 (58%), Gaps = 7/239 (2%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDK 65
+G+Q Q TVQ +E+AL K + + + +V + RTD+GVHA GQV HF TP +
Sbjct: 15 NGYQVQPGKRTVQDELEKALAVLHKSKDR-IPVVSSGRTDSGVHAAGQVIHFDTPLSI-P 72
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
E ALN LLP DI V++ + FHARFSA K Y Y +Y + D F+RH+AYH
Sbjct: 73 AERWPYALNALLPDDIAVKQAEIADDGFHARFSAVKKEYRYFVYTEKHPDVFKRHYAYHF 132
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
Y+LN MREAA++ +G H+F++F A V D V+ I+ D E LQ+ + GS
Sbjct: 133 SYRLNVQDMREAAKHLIGTHDFTSFCAAKTE--VQDKVRTIYELDWTETADGLQMRITGS 190
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
GFLY VR +A L+ G + PD ++ +L ++DR+ + AP HGL L ++ Y+
Sbjct: 191 GFLYNMVRIIAGTLLDAGIGKISPDEVKSMLEAKDREAAGR---TAPGHGLYLWNVYYD 246
>K2EDQ1_9BACT (tr|K2EDQ1) tRNA pseudouridine synthase A OS=uncultured bacterium
GN=truA PE=3 SV=1
Length = 220
Score = 166 bits (420), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 86/207 (41%), Positives = 127/207 (61%), Gaps = 5/207 (2%)
Query: 38 LVGASRTDAGVHAWGQVAHFVTPFNYDKLEDIHAALNGLLPSDIRVREISPVPEEFHARF 97
L G+ RTDAGVHA GQVAHF + ++D + LN LLPSDIRV++I P FHAR+
Sbjct: 15 LTGSGRTDAGVHARGQVAHFDSNASFDT-ATLRFHLNCLLPSDIRVKKIEPAEGGFHARY 73
Query: 98 SAKSKIYHYKIYNDTIMDPFQRHFAYHSPYKLNSAVMREAAQYYVGKHNFSAFANASHND 157
S K KIY+Y ++ +M+PF++ ++YH N +++ A+Q++VG HNF++FAN N
Sbjct: 74 STKRKIYYYYLFTHPVMNPFRKLYSYHIRGPFNEKLLQTASQHFVGTHNFTSFANVKPN- 132
Query: 158 GVPDPVKHIFRFDVKEMGALLQLEVEGSGFLYRQVRNMAALLVQIGKEALPPDIIQHILA 217
D ++ IFR D++ LL LE EG GFLY+ VRN+ L+ I + + + I A
Sbjct: 133 APEDQIRTIFRIDIRTSEDLLLLEFEGDGFLYKMVRNITGTLIDIATGKIALEDLPTIFA 192
Query: 218 SRDRKELAKYALFAPPHGLCLVSINYN 244
++DR+ + AP GL L ++ Y
Sbjct: 193 AKDRRYAGRT---APAQGLFLETVIYT 216
>M5NZ79_9BACI (tr|M5NZ79) tRNA pseudouridine synthase A OS=Bacillus sonorensis
L12 GN=truA PE=4 SV=1
Length = 247
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 95/238 (39%), Positives = 141/238 (59%), Gaps = 7/238 (2%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDKL 66
G+Q Q TVQ +ERAL K + + + +V + RTD+GVHA GQ HF T + +
Sbjct: 16 GYQVQPGQRTVQDELERALKTLHKSKER-IPVVASGRTDSGVHAVGQTIHFDTQLSIPET 74
Query: 67 EDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHSP 126
+ +A LN LLP DI V + V ++FHARFSAK K Y Y IY ++ F+RH+AYH P
Sbjct: 75 KWPYA-LNALLPDDIAVTKAEAVDDQFHARFSAKKKEYRYMIYRGRHLNVFKRHYAYHVP 133
Query: 127 YKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGSG 186
Y+L+ ++ +AAQ+ VG H+F++F A V D V+ I+ + E LQ+ + GSG
Sbjct: 134 YELDLQMVEKAAQHLVGTHDFTSFCTAKTE--VKDKVRTIYELEWSETEDGLQMRIVGSG 191
Query: 187 FLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
FLY VR +A L+ +G PD I+ ++A+++R + AP HGL L ++ Y+
Sbjct: 192 FLYNMVRIIAGTLLDVGTGKFLPDDIEKMIAAKNRDAAGR---TAPAHGLYLWNVIYD 246
>F4LSW8_TEPAE (tr|F4LSW8) tRNA pseudouridine synthase A OS=Tepidanaerobacter
acetatoxydans (strain DSM 21804 / JCM 16047 / Re1)
GN=truA PE=3 SV=1
Length = 243
Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 93/238 (39%), Positives = 136/238 (57%), Gaps = 9/238 (3%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDK 65
SGWQ Q + ++Q V+E A+ T + + ++G+ RTDAGVHA GQVA+F T
Sbjct: 15 SGWQRQKNAISIQEVLENAIKSITG---EAVNVIGSGRTDAGVHALGQVANFKTQTKIP- 70
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
+E + A+N LP DI V+ VPE+FHARF AK+KIY Y IYN P + ++Y
Sbjct: 71 IEKLPYAINSKLPEDIVVKHAEIVPEDFHARFWAKAKIYTYTIYNAKFPSPLLKRYSYFY 130
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
P LN M++AA +G H+F++F + N V V+ I R +V + G +++ E+E +
Sbjct: 131 PRPLNVRAMKKAADMLIGTHDFASF--MASNSPVKSTVRCIERLEVFQNGDIVKFEIEAN 188
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINY 243
GFLY VR +A L+ +G + I I+ S+DR K PP GLCL+ + Y
Sbjct: 189 GFLYNMVRIIAGTLLDVGINKKKANDIISIIKSKDRSMAGKT---LPPQGLCLIKVIY 243
>L0RXI5_TEPAE (tr|L0RXI5) tRNA pseudouridine synthase A OS=Tepidanaerobacter
acetatoxydans (strain DSM 21804 / JCM 16047 / Re1)
GN=truA PE=3 SV=1
Length = 256
Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 93/238 (39%), Positives = 136/238 (57%), Gaps = 9/238 (3%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDK 65
SGWQ Q + ++Q V+E A+ T + + ++G+ RTDAGVHA GQVA+F T
Sbjct: 28 SGWQRQKNAISIQEVLENAIKSITG---EAVNVIGSGRTDAGVHALGQVANFKTQTKIP- 83
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
+E + A+N LP DI V+ VPE+FHARF AK+KIY Y IYN P + ++Y
Sbjct: 84 IEKLPYAINSKLPEDIVVKHAEIVPEDFHARFWAKAKIYTYTIYNAKFPSPLLKRYSYFY 143
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
P LN M++AA +G H+F++F + N V V+ I R +V + G +++ E+E +
Sbjct: 144 PRPLNVRAMKKAADMLIGTHDFASF--MASNSPVKSTVRCIERLEVFQNGDIVKFEIEAN 201
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINY 243
GFLY VR +A L+ +G + I I+ S+DR K PP GLCL+ + Y
Sbjct: 202 GFLYNMVRIIAGTLLDVGINKKKANDIISIIKSKDRSMAGKT---LPPQGLCLIKVIY 256
>D4M3H8_9FIRM (tr|D4M3H8) tRNA pseudouridine synthase A OS=Ruminococcus torques
L2-14 GN=truA PE=3 SV=1
Length = 256
Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 94/237 (39%), Positives = 133/237 (56%), Gaps = 9/237 (3%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDKL 66
GWQ Q PT++ + +A++R TK +++ ++GASRTDAGVHA G VA F T
Sbjct: 17 GWQVQPEVPTIEGELNQAISRLTK---EEIIVIGASRTDAGVHAKGNVAVFDTESTI-PA 72
Query: 67 EDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHSP 126
+ ALN LLP DI V V ++H R K Y YKI N DP +R YH
Sbjct: 73 DRFAYALNPLLPEDIVVVASDEVEADWHPRHCDTEKTYEYKILNSKFPDPMRRRDTYHVS 132
Query: 127 YKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGSG 186
+ LN MREAA+Y G+H+F +F N V D V+ I+ +V++ L+ + V G+G
Sbjct: 133 FDLNLEKMREAAEYLKGEHDFKSFCNVHTQ--VEDTVRTIYDLEVEKEEELITIRVRGNG 190
Query: 187 FLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINY 243
FLY VR +A L+ +G+ A+ P+ I IL ++DR+ + PP GL LV I+Y
Sbjct: 191 FLYNMVRILAGTLIGVGRGAIAPEQIPAILEAKDRQ---AAGMTVPPQGLTLVKIDY 244
>M1L6Q0_BACAM (tr|M1L6Q0) tRNA pseudouridine synthase A OS=Bacillus
amyloliquefaciens IT-45 GN=truA PE=3 SV=1
Length = 247
Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 95/239 (39%), Positives = 137/239 (57%), Gaps = 7/239 (2%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDK 65
+G+Q Q TVQ +E+AL K + + ++ + RTD+ VHA GQV HF TP +
Sbjct: 15 NGYQVQPGKRTVQSELEKALAVIHKTDGR-VPVISSGRTDSDVHAAGQVIHFDTPLSI-P 72
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
E ALN LLP DI V+ + FHARFSA K Y Y +Y + D F+RH+AYH
Sbjct: 73 AEKWPFALNALLPDDIAVKTAEIADDGFHARFSAVQKEYRYFVYTEKHPDVFKRHYAYHF 132
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
Y+LN MREA+++ +G H+F++F A + V D V+ I+ D E G LQ+ + G+
Sbjct: 133 AYQLNVQKMREASRHLIGTHDFTSFCAA--DTAVQDKVRTIYELDWTETGDGLQMRITGN 190
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
GFLY VR +A L+ G PD ++ +L ++DR+ + AP HGL L S+ Y+
Sbjct: 191 GFLYNMVRIIAGTLLDTGAGKFSPDDVKAMLEAKDREAAGRT---APGHGLYLWSVCYD 246
>K9E8P1_9LACT (tr|K9E8P1) tRNA pseudouridine synthase A OS=Alloiococcus otitis
ATCC 51267 GN=truA PE=3 SV=1
Length = 264
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 99/240 (41%), Positives = 136/240 (56%), Gaps = 10/240 (4%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLV-GASRTDAGVHAWGQVAHFVTPFNYD 64
SG+Q Q++ TVQ +E AL KL + + + ASRTDAGVHA GQVAHF PF +
Sbjct: 17 SGYQTQVNALTVQDEIEGALQ---KLAKGEFVRIHAASRTDAGVHARGQVAHFDFPFEIE 73
Query: 65 KLEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYH 124
E + LN LLP DI +R + V FH+RF AK K Y Y + N IMDPF R +A H
Sbjct: 74 S-EGLQRGLNTLLPGDISIRSLDRVGGNFHSRFDAKGKHYRYWLSNSPIMDPFNRLYACH 132
Query: 125 SPYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEG 184
PY L+ ++ A + VG H+F++FA AS D V D V+ ++R D++ +G G
Sbjct: 133 HPYPLDLEAVQAALAHLVGCHDFTSFA-ASQTD-VKDKVRTLYRADLEVLGHDWIFNFVG 190
Query: 185 SGFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
GFLY VR M +V G+ + PD + I+ ++DR + K P GLCL+ + Y
Sbjct: 191 DGFLYNMVRIMVGTVVAAGEGRIAPDQVPDIIQAKDRSQAGKT---MPSKGLCLMKLYYG 247
>C2EVC9_9LACO (tr|C2EVC9) tRNA pseudouridine synthase A OS=Lactobacillus
vaginalis ATCC 49540 GN=truA PE=3 SV=1
Length = 256
Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 85/240 (35%), Positives = 147/240 (61%), Gaps = 8/240 (3%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDK 65
SG+Q Q TV+ V++ A+ + K ++ ++G+ RTDAGVHA QVAHF P++
Sbjct: 16 SGFQIQPHKRTVEQVLKNAVNKIAKHPTPEIPVIGSGRTDAGVHALNQVAHFDIPYHLSN 75
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
E + ALN +LP DI +++ V +FHAR+SA +K Y Y++ ++PF+R++ H
Sbjct: 76 -ESMRKALNSILPLDILIKKAELVDSDFHARYSAHNKTYRYRVDQGEFVNPFKRNYTAHF 134
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVK--EMGALLQLEVE 183
Y L+ +MR+AA+ ++G+H+F++F + V+ +++ D+K ++ + +
Sbjct: 135 KYPLDLTLMRKAAKNFIGEHDFTSFVASGSQ--AKSNVRTVYKIDIKRDKLRNEVVFDFT 192
Query: 184 GSGFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINY 243
G+GFLY Q+R M A L++IG + P D ++ +LA++DR + + AP GL LVS++Y
Sbjct: 193 GNGFLYNQIRIMVAFLLEIGSKQRPVDDVKRVLAAKDRTQA---RMTAPASGLYLVSVDY 249
>K2HU91_BACAM (tr|K2HU91) tRNA pseudouridine synthase A OS=Bacillus
amyloliquefaciens subsp. plantarum M27 GN=truA PE=3 SV=1
Length = 247
Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 95/239 (39%), Positives = 136/239 (56%), Gaps = 7/239 (2%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDK 65
+G+Q Q TVQ +E+AL K + + ++ + RTD+ VHA GQV HF TP +
Sbjct: 15 NGYQVQPGKRTVQSELEKALAVIHKTDGR-VPVISSGRTDSDVHAAGQVIHFDTPLSI-P 72
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
E ALN LLP DI V+ + FHARFSA K Y Y +Y + D F+RH+AYH
Sbjct: 73 AEKWPFALNALLPDDIAVKTAEIADDGFHARFSAVQKEYRYFVYTEKHPDVFKRHYAYHF 132
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
Y+LN MREA+++ G H+F++F A + V D V+ I+ D E G LQ+ + G+
Sbjct: 133 AYQLNVQKMREASRHLTGTHDFTSFCAA--DTAVQDKVRTIYELDWTETGDGLQMRITGN 190
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
GFLY VR +A L+ G PD ++ +L ++DR+ + AP HGL L S+ Y+
Sbjct: 191 GFLYNMVRIIAGTLLDTGAGKFSPDDVKAMLEAKDREAAGRT---APGHGLYLWSVCYD 246
>I0EZN3_9BACI (tr|I0EZN3) tRNA pseudouridine synthase A OS=Bacillus sp. JS
GN=truA PE=3 SV=1
Length = 247
Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 96/239 (40%), Positives = 137/239 (57%), Gaps = 7/239 (2%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDK 65
+G+Q Q TVQ +E+AL K + + + +V + RTD+GVHA GQV HF TP
Sbjct: 15 NGYQVQPGKRTVQDELEKALAVLHKSKER-IPVVSSGRTDSGVHAAGQVIHFDTPLAI-P 72
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
E ALN LLP DI V++ + FHARFSA K Y Y +Y + D F+RH+AYH
Sbjct: 73 AERWPYALNALLPDDIAVKQAEITDDGFHARFSAVKKEYRYFVYTEKHPDVFKRHYAYHF 132
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
Y+LN MREAA++ +G H+F++F A V D V+ I+ D E LQ+ + GS
Sbjct: 133 SYRLNVQDMREAAKHLIGTHDFTSFCAAKTE--VQDKVRTIYELDWTETDDGLQMRITGS 190
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
GFLY VR + L+ G + PD ++ +L ++DR+ + AP HGL L ++ Y+
Sbjct: 191 GFLYNMVRIIVGTLLDAGIGKISPDDVKSMLEAKDREAAGR---TAPGHGLYLWNVYYD 246
>E8T632_THEA1 (tr|E8T632) tRNA pseudouridine synthase A OS=Thermovibrio
ammonificans (strain DSM 15698 / JCM 12110 / HB-1)
GN=truA PE=3 SV=1
Length = 254
Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 93/243 (38%), Positives = 142/243 (58%), Gaps = 12/243 (4%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDKL 66
GWQ+ PTVQ + R L + R + L+GASRTDAGVHA GQVA+F+T
Sbjct: 17 GWQFLPDKPTVQGEIIRCLE---TVLRHPVKLIGASRTDAGVHARGQVANFLTAKEVS-C 72
Query: 67 EDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHSP 126
E + +ALNGLLP DIRV+E+ VP EFHAR SA+ K+Y Y+++ + PF+ +++
Sbjct: 73 EKLLSALNGLLPPDIRVKEVEEVPLEFHARRSARGKLYRYRLFIRDVPSPFEFRRSWYLR 132
Query: 127 YKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVK----EMGALLQLEV 182
L+ MREA Q+ VG H+F+ F+ + V +P++ I + ++ E G L++L
Sbjct: 133 RTLSVEPMREATQFLVGTHDFTTFSKSERKREV-NPIRTIDKIEITNKEWEEGVLVELLF 191
Query: 183 EGSGFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSIN 242
G FL VR + A LV++G + P ++ +L ++DR ++ APP GL L +
Sbjct: 192 TGRSFLRHMVRVIVATLVKVGTGEVKPQEVKEMLQAKDR---SRAPFLAPPDGLYLERVF 248
Query: 243 YNE 245
Y++
Sbjct: 249 YDD 251
>E3E458_BACA1 (tr|E3E458) tRNA pseudouridine synthase A OS=Bacillus atrophaeus
(strain 1942) GN=truA PE=3 SV=1
Length = 247
Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 95/239 (39%), Positives = 138/239 (57%), Gaps = 7/239 (2%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDK 65
+G+Q Q TVQ +E+AL K + K + ++ + RTD+GVHA GQV HF TP +
Sbjct: 15 NGYQVQPGKRTVQAELEKALAILHKSEDK-VPVISSGRTDSGVHAAGQVIHFDTPLSI-P 72
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
E ALN LLP DI V+ + FHARFSA K Y Y +Y + D F+RH+AYH
Sbjct: 73 AERWPYALNALLPGDIAVKTAEHADDGFHARFSAIKKEYRYFVYTEKHPDVFKRHYAYHF 132
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
Y+LN MREA+++ +G H+F++F +A N V D V+ I+ D + LQ+ + GS
Sbjct: 133 SYRLNVQKMREASEHLIGTHDFTSFCSA--NTEVRDKVRTIYELDWTDTDDGLQMRIVGS 190
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
GFLY VR +A L+ +G D ++ +L ++DR+ + AP HGL L + Y+
Sbjct: 191 GFLYNMVRIIAGTLLDVGTGKFSADDVKGMLDAKDREAAGRT---APGHGLYLWHVYYD 246
>I4XCJ1_BACAT (tr|I4XCJ1) tRNA pseudouridine synthase A OS=Bacillus atrophaeus
C89 GN=truA PE=3 SV=1
Length = 247
Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 95/239 (39%), Positives = 138/239 (57%), Gaps = 7/239 (2%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDK 65
+G+Q Q TVQ +E+AL K + K + ++ + RTD+GVHA GQV HF TP +
Sbjct: 15 NGYQVQPGKRTVQAELEKALAILHKSEDK-VPVISSGRTDSGVHAAGQVIHFDTPLSI-P 72
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
E ALN LLP DI V+ + FHARFSA K Y Y +Y + D F+RH+AYH
Sbjct: 73 AERWPYALNALLPGDIAVKTAEHADDGFHARFSAIKKEYRYFVYTEKHPDVFKRHYAYHF 132
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
Y+LN MREA+++ +G H+F++F +A N V D V+ I+ D + LQ+ + GS
Sbjct: 133 SYRLNVQKMREASEHLIGTHDFTSFCSA--NTEVRDKVRTIYELDWTDTDDGLQMRIVGS 190
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
GFLY VR +A L+ +G D ++ +L ++DR+ + AP HGL L + Y+
Sbjct: 191 GFLYNMVRIIAGTLLDVGTGKFSADDVKGMLDAKDREAAGRT---APGHGLYLWHVYYD 246
>F9N497_9FIRM (tr|F9N497) tRNA pseudouridine synthase A OS=Veillonella sp. oral
taxon 780 str. F0422 GN=truA PE=3 SV=1
Length = 260
Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 93/242 (38%), Positives = 141/242 (58%), Gaps = 9/242 (3%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDKL 66
G+Q Q + PTVQ +E AL+ K+ + + + G+SRTDAGVHA GQV F T +
Sbjct: 18 GYQRQQNGPTVQGYLEEALS---KVCNESITIYGSSRTDAGVHARGQVVAFTTTGKI-PV 73
Query: 67 EDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHSP 126
+++ AL +P I VRE +P +++ R K K Y Y I+ND ++DP Q +AYH
Sbjct: 74 DNLMRALIAHMPPYIVVREAQELPSDWNPRNYVKGKEYIYTIHNDAVVDPLQLRYAYHVR 133
Query: 127 YKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGSG 186
L+ + M++AA+ G HNFS F HN + DPVK ++ V + G+ +++ V G G
Sbjct: 134 KPLDISSMKQAAKALEGTHNFSTF--KGHNTTIQDPVKTMYAVKVSQQGSTVRIHVLGDG 191
Query: 187 FLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYNES 246
F+Y VRN+A LV +G P+ + I+AS +R+ + K AP HGLCL ++ +E+
Sbjct: 192 FVYHMVRNIAGFLVDVGLGRFQPEDVLCIIASENRQLIGKT---APAHGLCLDTVFTDEA 248
Query: 247 HL 248
L
Sbjct: 249 SL 250
>J0DHG1_9BACI (tr|J0DHG1) tRNA pseudouridine synthase A OS=Bacillus sp. 916
GN=truA PE=3 SV=1
Length = 247
Score = 164 bits (414), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 96/239 (40%), Positives = 136/239 (56%), Gaps = 7/239 (2%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDK 65
+G+Q Q TVQ +E+AL K + + + + RTD+ VHA GQV HF TP +
Sbjct: 15 NGYQVQPGKRTVQSELEKALAVIHKTDGR-VPVYSSGRTDSDVHAAGQVIHFDTPLSI-P 72
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
E ALN LLP DI V+ + FHARFSA K Y Y +Y + D F+RH+AYH
Sbjct: 73 AEKWPFALNALLPDDIAVKTAEIADDGFHARFSAVQKEYRYFVYTEKHPDVFKRHYAYHF 132
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
Y+LN MREA+++ VG H+F++F A + V D V+ I+ D E G LQ+ + G+
Sbjct: 133 AYQLNVQKMREASRHLVGTHDFTSFCAA--DTAVQDKVRTIYELDWTETGDGLQMRITGN 190
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
GFLY VR +A L+ G PD ++ +L ++DR+ + AP HGL L S+ Y+
Sbjct: 191 GFLYNMVRIIAGTLLDTGAGKFSPDDVKAMLEAKDREAAGRT---APGHGLYLWSVCYD 246
>Q2B2Q1_9BACI (tr|Q2B2Q1) tRNA pseudouridine synthase A OS=Bacillus sp. NRRL
B-14911 GN=truA PE=3 SV=1
Length = 245
Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 100/238 (42%), Positives = 130/238 (54%), Gaps = 8/238 (3%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDK 65
SG+Q Q TVQ VERAL + K + + + RTDAGVHA GQV HF +P +
Sbjct: 16 SGYQVQPGKRTVQLEVERALAKIHK--GNPVKIFASGRTDAGVHARGQVIHFDSPLAIPE 73
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
+ ALN LLP DI V E FHARF A K Y Y IY I PF+RH++YH
Sbjct: 74 DRWV-TALNSLLPKDIAVESTEKAAEGFHARFDACGKEYRYFIYRGKIRSPFERHYSYHY 132
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
P+ L+ MREAA++ +G H+FS+F AS D V D V+ I + V+E G +L+L GS
Sbjct: 133 PHPLDIRAMREAAEHLLGTHDFSSFC-ASRTD-VEDKVREIRKVHVEEAGEMLELHFTGS 190
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINY 243
GFLY VR + L++ G P +++ RDR K AP GL L + Y
Sbjct: 191 GFLYNMVRILTGTLLEAGAGTRDPGSFPEVISGRDRSLAGKT---APAEGLYLWKVFY 245
>A1HQP5_9FIRM (tr|A1HQP5) tRNA pseudouridine synthase A OS=Thermosinus
carboxydivorans Nor1 GN=truA PE=3 SV=1
Length = 250
Score = 163 bits (413), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 130/238 (54%), Gaps = 11/238 (4%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDKL 66
G+Q Q + TVQ V+E R + L + GA+RTDAGVHA+GQV F T
Sbjct: 23 GFQRQANAITVQQVLEE---RLATIFGHPLKVTGAARTDAGVHAYGQVVGFATSGTIPAA 79
Query: 67 EDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHSP 126
+ AA +LP DI V + V +FHARFSA+SKIY Y+IYN + DPF+R++A+H
Sbjct: 80 NIVRAA-KSVLPPDIVVVKAEEVSADFHARFSARSKIYLYRIYNAAVADPFRRNYAWHVT 138
Query: 127 YKLNSAVMREAAQYYVGKHNFSAFANASHNDGVP-DPVKHIFRFDVKEMGALLQLEVEGS 185
L+ A M A Q VG H+FSAF A G P PV+ I+ G +L+ G+
Sbjct: 139 QPLDEAAMDTAVQTVVGTHDFSAFRAAG---GPPVSPVRTIYEAGCTREGDMLEFRFWGN 195
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINY 243
GFLY VRN+ LV +G L D ILA RDR + + APP GL L I Y
Sbjct: 196 GFLYHMVRNLVGTLVDVGLGRLTRDGFTRILAGRDRT---RAGITAPPQGLYLKEIFY 250
>G4NQI0_BACPN (tr|G4NQI0) tRNA pseudouridine synthase A OS=Bacillus subtilis
subsp. spizizenii TU-B-10 GN=truA PE=3 SV=1
Length = 247
Score = 163 bits (413), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 96/239 (40%), Positives = 137/239 (57%), Gaps = 7/239 (2%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDK 65
+G+Q Q TVQ +E+AL K + + + +V + RTD+GVHA GQV HF TP +
Sbjct: 15 NGYQVQPGKRTVQNELEKALAVLHKSKDR-IPVVSSGRTDSGVHAAGQVIHFDTPLSI-P 72
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
E ALN LLP DI V++ + FHARFSA K Y Y +Y + D F+RH+AYH
Sbjct: 73 AERWPYALNALLPDDIAVKQAEIADDGFHARFSAVKKEYRYFVYTEKHPDVFKRHYAYHF 132
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
Y LN MREAA++ +G H+F++F V D V+ I+ D E LQ+ + GS
Sbjct: 133 SYHLNVQNMREAAKHLIGTHDFTSFCAVKTE--VQDKVRTIYELDWTETDDGLQMRITGS 190
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
GFLY VR + L+ G + PD ++ +LA++DR+ + AP HGL L ++ Y+
Sbjct: 191 GFLYNMVRIIVGTLLDAGIGKISPDDVKSMLAAKDREAAGR---TAPGHGLYLWNVYYD 246
>F3AKK8_9FIRM (tr|F3AKK8) tRNA pseudouridine synthase A OS=Lachnospiraceae
bacterium 9_1_43BFAA GN=truA PE=3 SV=1
Length = 239
Score = 163 bits (413), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 92/238 (38%), Positives = 129/238 (54%), Gaps = 12/238 (5%)
Query: 7 GWQYQMSPP-TVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDK 65
GWQ + P T+Q +ER L+ K++ + + G+ RTDAGVHA GQVAH N D
Sbjct: 12 GWQRLTNEPGTIQGTIERVLS---KIEGSPVKISGSGRTDAGVHAKGQVAHAFLKTNEDP 68
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
E + LN +LP DIR+ + V + FH+R+SA SK+Y Y+I + D F R + YH
Sbjct: 69 -ELLRQELNRMLPEDIRICLVESVSQSFHSRYSAVSKVYEYRIDQRSRADVFTRKYCYHR 127
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
P L+ MR+AA + G H+F +F + D V+ IF D+KE L L G
Sbjct: 128 PVHLDLDRMRQAADHLTGTHDFGSFTDNKE----ADSVRTIFSIDMKEENEKLVLAFRGD 183
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINY 243
GFLY VR +A L+++G+ P+ + RDR + AP HGLCL +NY
Sbjct: 184 GFLYHMVRILAGTLLEVGEGIRTPESVLEAFHHRDR---SLTGFLAPAHGLCLREVNY 238
>Q0TRP6_CLOP1 (tr|Q0TRP6) tRNA pseudouridine synthase A OS=Clostridium
perfringens (strain ATCC 13124 / NCTC 8237 / Type A)
GN=truA1 PE=3 SV=1
Length = 248
Score = 163 bits (412), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 92/241 (38%), Positives = 132/241 (54%), Gaps = 13/241 (5%)
Query: 7 GWQYQMSP----PTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFN 62
GWQ Q TVQ +E+ LT+ T +++ L+G RTD+GVHA VA+F T +
Sbjct: 17 GWQKQNQKGSNVSTVQDKLEKVLTKMTS---EEIQLIGCGRTDSGVHAKNYVANFKTN-S 72
Query: 63 YDKLEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFA 122
LE I +N LP DIRV+EI E FHARF+ KSK Y Y I N+ D F R +A
Sbjct: 73 LMTLEQIIEYINEYLPEDIRVKEIREASERFHARFNVKSKTYEYTIDNNKFKDVFLRKYA 132
Query: 123 YHSPYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEV 182
+H KL+ M E A+Y +G H+F +F + + ++ I + E +L +++
Sbjct: 133 WHVEEKLDLEAMEEGAKYLLGTHDFKSFTSLKSKN--KSTLRTINSIEFHENNNILSIKI 190
Query: 183 EGSGFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSIN 242
G+GFL VR + LV +G + P I IL +++R AK + AP HGLCL+ +N
Sbjct: 191 NGNGFLLNMVRIIVGTLVDVGLGKIEPKYINDILEAKER---AKASEKAPAHGLCLLELN 247
Query: 243 Y 243
Y
Sbjct: 248 Y 248
>Q0SU25_CLOPS (tr|Q0SU25) tRNA pseudouridine synthase A OS=Clostridium
perfringens (strain SM101 / Type A) GN=truA_1 PE=3 SV=1
Length = 248
Score = 163 bits (412), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 92/241 (38%), Positives = 132/241 (54%), Gaps = 13/241 (5%)
Query: 7 GWQYQMSP----PTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFN 62
GWQ Q TVQ +E+ LT+ T +++ L+G RTD+GVHA VA+F T +
Sbjct: 17 GWQKQNQKGSNVSTVQDKLEKVLTKMTS---EEIQLIGCGRTDSGVHAKNYVANFKTN-S 72
Query: 63 YDKLEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFA 122
LE I +N LP DIRV+EI E FHARF+ KSK Y Y I N+ D F R +A
Sbjct: 73 LMTLEQIIKYINEYLPEDIRVKEIREASERFHARFNVKSKTYEYTIDNNKFKDVFLRKYA 132
Query: 123 YHSPYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEV 182
+H KL+ M E A+Y +G H+F +F + + ++ I + E +L +++
Sbjct: 133 WHVEEKLDLEAMEEGAKYLLGTHDFKSFTSLKSKN--KSTLRTINSIEFHENNNILSIKI 190
Query: 183 EGSGFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSIN 242
G+GFL VR + LV +G + P I IL +++R AK + AP HGLCL+ +N
Sbjct: 191 NGNGFLLNMVRIIVGTLVDVGLGKIEPKYINDILEAKER---AKASEKAPAHGLCLLELN 247
Query: 243 Y 243
Y
Sbjct: 248 Y 248
>I7LIW8_9CLOT (tr|I7LIW8) tRNA pseudouridine synthase A OS=Caloramator
australicus RC3 GN=truA PE=3 SV=1
Length = 244
Score = 162 bits (411), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 91/237 (38%), Positives = 139/237 (58%), Gaps = 9/237 (3%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDKL 66
GWQ Q + ++Q +E+A+ + T + + ++ +SRTDAGVHA GQVA+F+T
Sbjct: 17 GWQRQKNGVSIQETIEKAIEKVTGEKTE---IISSSRTDAGVHAKGQVANFLTSSTVPP- 72
Query: 67 EDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHSP 126
E I A+N LP DI + VP +FH+R+S+K K Y Y I N I ++++ H P
Sbjct: 73 EKICYAINSFLPDDIVILSSQEVPLDFHSRYSSKGKKYSYTILNRKIPSALLKNYSAHIP 132
Query: 127 YKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGSG 186
Y+LN M A++Y++G+H+FSAF S V V+ I R ++ + ++++ +E +G
Sbjct: 133 YELNIEDMIRASKYFLGEHDFSAF--KSTGSSVKGNVRTIKRLELIKDEDIIKMFIEANG 190
Query: 187 FLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINY 243
FLY VR +A L+++GK + PD I I+ SRDRK K AP GLCL + Y
Sbjct: 191 FLYNMVRIIAGTLIEVGKGRIKPDDIPFIIDSRDRK---KAGPTAPAQGLCLEKVYY 244
>M1X8P1_BACAM (tr|M1X8P1) tRNA pseudouridine synthase A OS=Bacillus
amyloliquefaciens subsp. plantarum UCMB5036 GN=truA PE=3
SV=1
Length = 247
Score = 162 bits (411), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 96/239 (40%), Positives = 135/239 (56%), Gaps = 7/239 (2%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDK 65
+G+Q Q TVQ +E+AL K + + + + RTD+ VHA GQV HF TP +
Sbjct: 15 NGYQVQPGKRTVQSELEKALAVIHKTDGR-VPVYSSGRTDSDVHAAGQVIHFDTPLSI-P 72
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
E ALN LLP DI V+ + FHARFSA K Y Y +Y + D F+RH+AYH
Sbjct: 73 AEKWPFALNALLPDDIAVKTAEIADDGFHARFSAVQKEYRYFVYTEKHPDVFKRHYAYHF 132
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
Y LN MREA+++ VG H+F++F A + V D V+ I+ D E G LQ+ + G+
Sbjct: 133 AYPLNVQKMREASRHLVGTHDFTSFCAA--DTAVQDKVRTIYELDWTETGDGLQMRITGN 190
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
GFLY VR +A L+ G PD ++ +L ++DR+ + AP HGL L S+ Y+
Sbjct: 191 GFLYNMVRIIAGTLLDTGAGKFSPDDVKAMLEAKDREAAGRT---APGHGLYLWSVCYD 246
>E9RRG1_9FIRM (tr|E9RRG1) tRNA pseudouridine synthase A OS=Lachnospiraceae
bacterium 6_1_37FAA GN=truA PE=3 SV=1
Length = 249
Score = 162 bits (411), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 91/238 (38%), Positives = 129/238 (54%), Gaps = 12/238 (5%)
Query: 7 GWQYQMSPP-TVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDK 65
GWQ + P T+Q +ER L+ +++ + + G+ RTDAGVHA GQVAH N D
Sbjct: 22 GWQRLTNEPGTIQGTIERVLS---EIEGSPVKISGSGRTDAGVHAKGQVAHVFLKTNEDP 78
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
E + LN +LP DIR+ + V + FH+R+SA SK+Y Y+I + D F R + YH
Sbjct: 79 -ELLRQELNRMLPEDIRICRVESVSQSFHSRYSAVSKVYEYRIDQRSRADVFTRKYCYHR 137
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
P L+ MR+AA + G H+F +F + D V+ IF D+KE L L G
Sbjct: 138 PVHLDLDRMRQAADHLTGTHDFGSFTDNKE----ADSVRTIFSIDMKEENEKLVLAFCGD 193
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINY 243
GFLY VR +A L+++G+ P+ + RDR + AP HGLCL +NY
Sbjct: 194 GFLYHMVRILAGTLLEVGEGIRTPESVLEAFHHRDR---SLTGFLAPAHGLCLREVNY 248
>R1CWP0_9CLOT (tr|R1CWP0) tRNA pseudouridine synthase A OS=Clostridiaceae
bacterium L21-TH-D2 GN=L21TH_0926 PE=4 SV=1
Length = 251
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 87/242 (35%), Positives = 138/242 (57%), Gaps = 9/242 (3%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDKL 66
GWQ Q + TVQ +E+A+ + T +++ ++GA RTD GVHA QVA+F T
Sbjct: 17 GWQKQPNVITVQEEIEKAINKITG---EEIKIIGAGRTDRGVHAKAQVANFNTASRI-PA 72
Query: 67 EDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHSP 126
+ I ALN LP DI ++E V E+FH+R+SA K Y Y +YN+ P R++AY+ P
Sbjct: 73 DRIKFALNSQLPEDISIKESEEVGEDFHSRYSAVGKEYRYLVYNNKTRSPLLRNYAYYVP 132
Query: 127 YKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGSG 186
YKL+ ++ A++Y++ ++F F S V D V+ I+ F V + + ++ ++G+G
Sbjct: 133 YKLDVENIKAASKYFIDTYDFKGF--MSSGSSVKDTVRTIYDFSVLKKDSTIEFRIKGNG 190
Query: 187 FLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYNES 246
FLY VR + L+++G + + I +I+ S+DR AL P GL L + YN S
Sbjct: 191 FLYNMVRIIVGTLIEVGNNKIKVEDIPNIIKSKDRSNAGHTAL---PQGLYLYRVYYNNS 247
Query: 247 HL 248
+
Sbjct: 248 EI 249
>E0TZI1_BACPZ (tr|E0TZI1) tRNA pseudouridine synthase A OS=Bacillus subtilis
subsp. spizizenii (strain ATCC 23059 / NRRL B-14472 /
W23) GN=truA PE=3 SV=1
Length = 247
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 96/239 (40%), Positives = 137/239 (57%), Gaps = 7/239 (2%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDK 65
+G+Q Q TVQ +E+AL K + + + +V + RTD+GVHA GQV HF TP +
Sbjct: 15 NGYQVQPGKRTVQDELEKALAVLHKSKDR-IPVVSSGRTDSGVHAAGQVIHFDTPLSI-P 72
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
E ALN LLP DI V++ + FHARFSA K Y Y +Y + D F+RH+AYH
Sbjct: 73 AEKWPYALNALLPDDIAVKQAEIADDGFHARFSAVKKEYRYFVYTEKHPDVFKRHYAYHF 132
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
Y LN MREAA++ +G H+F++F V D V+ I+ D E LQ+ + GS
Sbjct: 133 SYHLNVQNMREAAKHLLGTHDFTSFCAVKTE--VQDKVRTIYELDWAETDDGLQMRITGS 190
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
GFLY VR +A L+ G + PD ++ +L ++DR+ + AP HGL L ++ Y+
Sbjct: 191 GFLYNMVRIIAGTLLDAGIGKISPDDVKSMLEAKDREAAGRT---APGHGLYLWNVFYD 246
>D5N5F7_BACPN (tr|D5N5F7) tRNA pseudouridine synthase A OS=Bacillus subtilis
subsp. spizizenii ATCC 6633 GN=truA PE=3 SV=1
Length = 247
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 96/239 (40%), Positives = 137/239 (57%), Gaps = 7/239 (2%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDK 65
+G+Q Q TVQ +E+AL K + + + +V + RTD+GVHA GQV HF TP +
Sbjct: 15 NGYQVQPGKRTVQDELEKALAVLHKSKDR-IPVVSSGRTDSGVHAAGQVIHFDTPLSI-P 72
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
E ALN LLP DI V++ + FHARFSA K Y Y +Y + D F+RH+AYH
Sbjct: 73 AEKWPYALNALLPDDIAVKQAEIADDGFHARFSAVKKEYRYFVYTEKHPDVFKRHYAYHF 132
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
Y LN MREAA++ +G H+F++F V D V+ I+ D E LQ+ + GS
Sbjct: 133 SYHLNVQNMREAAKHLLGTHDFTSFCAVKTE--VQDKVRTIYELDWAETDDGLQMRITGS 190
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
GFLY VR +A L+ G + PD ++ +L ++DR+ + AP HGL L ++ Y+
Sbjct: 191 GFLYNMVRIIAGTLLDAGIGKISPDDVKSMLEAKDREAAGRT---APGHGLYLWNVFYD 246
>I2C0R5_BACAM (tr|I2C0R5) tRNA pseudouridine synthase A OS=Bacillus
amyloliquefaciens Y2 GN=truA PE=3 SV=1
Length = 247
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 95/239 (39%), Positives = 135/239 (56%), Gaps = 7/239 (2%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDK 65
+G+Q Q TVQ +E+AL K + + + + RTD+ VHA GQV HF TP +
Sbjct: 15 NGYQVQPGKRTVQSELEKALAVIHKTDGR-VPVYSSGRTDSDVHAAGQVIHFDTPLSI-P 72
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
E ALN LLP DI V+ + FHARFSA K Y Y +Y + D F+RH+AYH
Sbjct: 73 AEKWPFALNALLPDDIAVKTAEIADDGFHARFSAVQKEYRYFVYTEKHPDVFKRHYAYHF 132
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
Y LN MREA+++ +G H+F++F A + V D V+ I+ D E G LQ+ + G+
Sbjct: 133 AYPLNVQKMREASRHLIGTHDFTSFCAA--DTAVQDKVRTIYELDWTETGDGLQMRITGN 190
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
GFLY VR +A L+ G PD ++ +L ++DR+ + AP HGL L S+ Y+
Sbjct: 191 GFLYNMVRIIAGTLLDTGAGKFSPDDVKAMLEAKDREAAGRT---APGHGLYLWSVCYD 246
>H8XDD7_BACAM (tr|H8XDD7) tRNA pseudouridine synthase A OS=Bacillus
amyloliquefaciens subsp. plantarum YAU B9601-Y2 GN=truA
PE=3 SV=1
Length = 247
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 95/239 (39%), Positives = 135/239 (56%), Gaps = 7/239 (2%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDK 65
+G+Q Q TVQ +E+AL K + + + + RTD+ VHA GQV HF TP +
Sbjct: 15 NGYQVQPGKRTVQSELEKALAVIHKTDGR-VPVYSSGRTDSDVHAAGQVIHFDTPLSI-P 72
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
E ALN LLP DI V+ + FHARFSA K Y Y +Y + D F+RH+AYH
Sbjct: 73 AEKWPFALNALLPDDIAVKTAEIADDGFHARFSAVQKEYRYFVYTEKHPDVFKRHYAYHF 132
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
Y LN MREA+++ +G H+F++F A + V D V+ I+ D E G LQ+ + G+
Sbjct: 133 AYPLNVQKMREASRHLIGTHDFTSFCAA--DTAVQDKVRTIYELDWTETGDGLQMRITGN 190
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
GFLY VR +A L+ G PD ++ +L ++DR+ + AP HGL L S+ Y+
Sbjct: 191 GFLYNMVRIIAGTLLDTGAGKFSPDDVKAMLEAKDREAAGRT---APGHGLYLWSVCYD 246
>B1RBH0_CLOPF (tr|B1RBH0) tRNA pseudouridine synthase A OS=Clostridium
perfringens B str. ATCC 3626 GN=truA PE=3 SV=1
Length = 248
Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 92/241 (38%), Positives = 131/241 (54%), Gaps = 13/241 (5%)
Query: 7 GWQYQMSP----PTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFN 62
GWQ Q TVQ +E+ LT+ T +++ L+G RTD+GVHA VA+F T +
Sbjct: 17 GWQKQNQKGSNVSTVQDKLEKVLTKMTS---EEIQLIGCGRTDSGVHAKNYVANFKTN-S 72
Query: 63 YDKLEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFA 122
LE I +N LP DIRV EI E FHARF+ KSK Y Y I N+ D F R +A
Sbjct: 73 LMTLEQIIEYINEYLPEDIRVTEIREASERFHARFNVKSKTYEYTIDNNKFKDVFLRKYA 132
Query: 123 YHSPYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEV 182
+H KL+ M E A+Y +G H+F +F + + ++ I + E +L +++
Sbjct: 133 WHVEEKLDLEAMEEGAKYLLGTHDFKSFTSLKSKN--KSTLRTINSIEFHENNNILSIKI 190
Query: 183 EGSGFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSIN 242
G+GFL VR + LV +G + P I IL +++R AK + AP HGLCL+ +N
Sbjct: 191 NGNGFLLNMVRIIVGTLVDVGLGKIEPKYINDILEAKER---AKASEKAPSHGLCLLELN 247
Query: 243 Y 243
Y
Sbjct: 248 Y 248
>B1RGY6_CLOPF (tr|B1RGY6) tRNA pseudouridine synthase A OS=Clostridium
perfringens CPE str. F4969 GN=truA PE=3 SV=1
Length = 248
Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 92/241 (38%), Positives = 131/241 (54%), Gaps = 13/241 (5%)
Query: 7 GWQYQMSP----PTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFN 62
GWQ Q TVQ +E+ LT+ T +++ L+G RTD+GVHA VA+F T +
Sbjct: 17 GWQKQNQKGSNVSTVQDKLEKVLTKMTS---EEIQLIGCGRTDSGVHAKNYVANFKTN-S 72
Query: 63 YDKLEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFA 122
LE I +N LP DIRV EI E FHARF+ KSK Y Y I N+ D F R +A
Sbjct: 73 LMTLEQIIEYINEYLPEDIRVTEIREASERFHARFNVKSKTYEYTIDNNKFKDVFLRKYA 132
Query: 123 YHSPYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEV 182
+H KL+ M E A+Y +G H+F +F + + ++ I + E +L +++
Sbjct: 133 WHVEEKLDLEAMEEGAKYLLGTHDFKSFTSLKSKN--KSTLRTINSIEFHENNNILSIKI 190
Query: 183 EGSGFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSIN 242
G+GFL VR + LV +G + P I IL +++R AK + AP HGLCL+ +N
Sbjct: 191 NGNGFLLNMVRIIVGTLVNVGLGKIEPKYINDILEAKER---AKASEKAPAHGLCLLELN 247
Query: 243 Y 243
Y
Sbjct: 248 Y 248
>R6EFL0_9FIRM (tr|R6EFL0) tRNA pseudouridine synthase A 1 OS=Lachnospiraceae
bacterium CAG:215 GN=BN538_01818 PE=4 SV=1
Length = 257
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 97/242 (40%), Positives = 141/242 (58%), Gaps = 13/242 (5%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVT--PFNYD 64
GWQ Q + TV+ V+ RAL+ T + + ++GASRTD+GVHA G VA F T P D
Sbjct: 17 GWQVQPNGITVEEVLNRALSALTGTK---VNVIGASRTDSGVHARGNVAVFDTDSPIPPD 73
Query: 65 KLEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYH 124
+ I A+N LP DI V + VP+++H R+ K Y Y I N + DP +R+ Y
Sbjct: 74 R---ISYAVNQKLPDDIVVVKSEEVPKDWHPRYQNSVKTYEYHILNAKMPDPTRRYTTYF 130
Query: 125 SPYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEG 184
Y L+ MR+AA Y VG+H+F++F N H D V D V+ I+ V++ G L + V G
Sbjct: 131 VSYHLDLEQMRKAAGYLVGEHDFASFCNI-HTD-VEDTVRTIYELTVEKSGEDLTIRVRG 188
Query: 185 SGFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
+GFLY VR +A L+Q+G+ P+ ++ IL ++DR+ + APPHGL L+ I Y
Sbjct: 189 NGFLYNMVRIIAGTLLQVGRGFYTPEDVRGILETKDRESA---GVTAPPHGLMLMRIEYE 245
Query: 245 ES 246
+
Sbjct: 246 KD 247
>C1N6R6_MICPC (tr|C1N6R6) tRNA pseudouridine synthase (Fragment) OS=Micromonas
pusilla (strain CCMP1545) GN=MICPUCDRAFT_5846 PE=3 SV=1
Length = 261
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 103/244 (42%), Positives = 138/244 (56%), Gaps = 11/244 (4%)
Query: 7 GWQYQ-MSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDK 65
G+QYQ TVQ VE+ALT+ T R L + + RTDAGVHA GQV HF +
Sbjct: 16 GFQYQPRDAKTVQGEVEKALTKITGEDRDFLGIQASGRTDAGVHARGQVLHFYARRPIED 75
Query: 66 LEDIHAALNGLLPSDIRV-REISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYH 124
L ++NG+LP D+RV + I P P FHARF A K YHY + MDPF R A H
Sbjct: 76 LARFQRSMNGVLPRDVRVMKAIRPHP-AFHARFHAVRKTYHYYLDTRLTMDPFLRRHALH 134
Query: 125 SPYK-LNSAVMREAAQYYVGKHNFSAFANASHNDG-VPDPVKHIFRFDVKEM--GALLQL 180
+ + +R A+ +VG +FSAF+N + V DPV+ I+RFDV E+ LL+L
Sbjct: 135 VGWNPPDVEKLRRGAECFVGTRDFSAFSNKPRDKTLVRDPVRTIYRFDVNELKGDGLLRL 194
Query: 181 EVEGSGFLYRQVRNM-AALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLV 239
EVEG+GF+Y+QVRNM A++ + + P I +L +DR + AP HGL L
Sbjct: 195 EVEGNGFMYKQVRNMVGAMITAATSKKMQPADIAAMLEGKDR---GVAPMGAPAHGLFLH 251
Query: 240 SINY 243
+ Y
Sbjct: 252 DVVY 255
>H7CV53_CLOPF (tr|H7CV53) tRNA pseudouridine synthase A OS=Clostridium
perfringens F262 GN=truA PE=3 SV=1
Length = 248
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 92/241 (38%), Positives = 131/241 (54%), Gaps = 13/241 (5%)
Query: 7 GWQYQMSP----PTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFN 62
GWQ Q TVQ +E+ LT+ T +++ L+G RTD+GVHA VA+F T +
Sbjct: 17 GWQKQNQKGSNVSTVQDKLEKVLTKMTS---EEIQLIGCGRTDSGVHAKNYVANFKTN-S 72
Query: 63 YDKLEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFA 122
LE I +N LP DIRV EI E FHARF+ KSK Y Y I N+ D F R +A
Sbjct: 73 LMTLEQIIEYINEYLPEDIRVTEIREASERFHARFNVKSKTYEYTIDNNKFKDVFLRKYA 132
Query: 123 YHSPYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEV 182
+H KL+ M E A+Y +G H+F +F + + ++ I + E +L +++
Sbjct: 133 WHVEEKLDLEAMEEGAKYLLGTHDFKSFTSLKSKN--KSTLRTINSIEFHENNNILSIKI 190
Query: 183 EGSGFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSIN 242
G+GFL VR + LV +G + P I IL +++R AK + AP HGLCL+ +N
Sbjct: 191 NGNGFLLNMVRIIVGTLVDVGLGKIEPKYINDILEAKER---AKASEKAPAHGLCLLELN 247
Query: 243 Y 243
Y
Sbjct: 248 Y 248
>H1CQ61_CLOPF (tr|H1CQ61) tRNA pseudouridine synthase A OS=Clostridium
perfringens WAL-14572 GN=truA PE=3 SV=1
Length = 248
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 92/241 (38%), Positives = 131/241 (54%), Gaps = 13/241 (5%)
Query: 7 GWQYQMSP----PTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFN 62
GWQ Q TVQ +E+ LT+ T +++ L+G RTD+GVHA VA+F T +
Sbjct: 17 GWQKQNQKGSNVSTVQDKLEKVLTKMTS---EEIQLIGCGRTDSGVHAKNYVANFKTN-S 72
Query: 63 YDKLEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFA 122
LE I +N LP DIRV EI E FHARF+ KSK Y Y I N+ D F R +A
Sbjct: 73 LMTLEQIIEYINEYLPEDIRVTEIREASERFHARFNVKSKTYEYTIDNNKFKDVFLRKYA 132
Query: 123 YHSPYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEV 182
+H KL+ M E A+Y +G H+F +F + + ++ I + E +L +++
Sbjct: 133 WHVEEKLDLEAMEEGAKYLLGTHDFKSFTSLKSKN--KSTLRTINSIEFHENNNILSIKI 190
Query: 183 EGSGFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSIN 242
G+GFL VR + LV +G + P I IL +++R AK + AP HGLCL+ +N
Sbjct: 191 NGNGFLLNMVRIIVGTLVDVGLGKIEPKYINDILEAKER---AKASEKAPAHGLCLLELN 247
Query: 243 Y 243
Y
Sbjct: 248 Y 248
>B1RN56_CLOPF (tr|B1RN56) tRNA pseudouridine synthase A OS=Clostridium
perfringens NCTC 8239 GN=truA PE=3 SV=1
Length = 248
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 92/241 (38%), Positives = 131/241 (54%), Gaps = 13/241 (5%)
Query: 7 GWQYQMSP----PTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFN 62
GWQ Q TVQ +E+ LT+ T +++ L+G RTD+GVHA VA+F T +
Sbjct: 17 GWQKQNQKGSNVSTVQDKLEKVLTKMTS---EEIQLIGCGRTDSGVHAKNYVANFKTN-S 72
Query: 63 YDKLEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFA 122
LE I +N LP DIRV EI E FHARF+ KSK Y Y I N+ D F R +A
Sbjct: 73 LMTLEQIIEYINEYLPEDIRVTEIREASERFHARFNVKSKTYEYTIDNNKFKDVFLRKYA 132
Query: 123 YHSPYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEV 182
+H KL+ M E A+Y +G H+F +F + + ++ I + E +L +++
Sbjct: 133 WHVEEKLDLEAMEEGAKYLLGTHDFKSFTSLKSKN--KSTLRTINSIEFHENNNILSIKI 190
Query: 183 EGSGFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSIN 242
G+GFL VR + LV +G + P I IL +++R AK + AP HGLCL+ +N
Sbjct: 191 NGNGFLLNMVRIIVGTLVDVGLGKIEPKYINDILEAKER---AKASEKAPAHGLCLLELN 247
Query: 243 Y 243
Y
Sbjct: 248 Y 248
>B1BY96_CLOPF (tr|B1BY96) tRNA pseudouridine synthase A OS=Clostridium
perfringens E str. JGS1987 GN=truA PE=3 SV=1
Length = 248
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 92/241 (38%), Positives = 131/241 (54%), Gaps = 13/241 (5%)
Query: 7 GWQYQMSP----PTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFN 62
GWQ Q TVQ +E+ LT+ T +++ L+G RTD+GVHA VA+F T +
Sbjct: 17 GWQKQNQKGSNVSTVQDKLEKVLTKMTS---EEIQLIGCGRTDSGVHAKNYVANFKTN-S 72
Query: 63 YDKLEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFA 122
LE I +N LP DIRV EI E FHARF+ KSK Y Y I N+ D F R +A
Sbjct: 73 LMTLEQIIEYINEYLPEDIRVTEIREASERFHARFNVKSKTYEYTIDNNKFKDVFLRKYA 132
Query: 123 YHSPYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEV 182
+H KL+ M E A+Y +G H+F +F + + ++ I + E +L +++
Sbjct: 133 WHVEEKLDLEAMEEGAKYLLGTHDFKSFTSLKSKN--KSTLRTINSIEFHENNNILSIKI 190
Query: 183 EGSGFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSIN 242
G+GFL VR + LV +G + P I IL +++R AK + AP HGLCL+ +N
Sbjct: 191 NGNGFLLNMVRIIVGTLVDVGLGKIEPKYINDILEAKER---AKASEKAPAHGLCLLELN 247
Query: 243 Y 243
Y
Sbjct: 248 Y 248
>B1BEH0_CLOPF (tr|B1BEH0) tRNA pseudouridine synthase A OS=Clostridium
perfringens C str. JGS1495 GN=truA PE=3 SV=1
Length = 248
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 92/241 (38%), Positives = 131/241 (54%), Gaps = 13/241 (5%)
Query: 7 GWQYQMSP----PTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFN 62
GWQ Q TVQ +E+ LT+ T +++ L+G RTD+GVHA VA+F T +
Sbjct: 17 GWQKQNQKGSNVSTVQDKLEKVLTKMTS---EEIQLIGCGRTDSGVHAKNYVANFKTN-S 72
Query: 63 YDKLEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFA 122
LE I +N LP DIRV EI E FHARF+ KSK Y Y I N+ D F R +A
Sbjct: 73 LMTLEQIIEYINEYLPEDIRVTEIREASERFHARFNVKSKTYEYTIDNNKFKDVFLRKYA 132
Query: 123 YHSPYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEV 182
+H KL+ M E A+Y +G H+F +F + + ++ I + E +L +++
Sbjct: 133 WHVEEKLDLEAMEEGAKYLLGTHDFKSFTSLKSKN--KSTLRTINSIEFHENNNILSIKI 190
Query: 183 EGSGFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSIN 242
G+GFL VR + LV +G + P I IL +++R AK + AP HGLCL+ +N
Sbjct: 191 NGNGFLLNMVRIIVGTLVDVGLGKIEPKYINDILEAKER---AKASEKAPAHGLCLLELN 247
Query: 243 Y 243
Y
Sbjct: 248 Y 248
>J8AIE2_BACCE (tr|J8AIE2) tRNA pseudouridine synthase A OS=Bacillus cereus
BAG5X2-1 GN=truA PE=3 SV=1
Length = 247
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 93/239 (38%), Positives = 137/239 (57%), Gaps = 10/239 (4%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGAS-RTDAGVHAWGQVAHFVTPFNYDK 65
G+Q Q TVQ +E+AL KL + +L V AS RTD+ VHA GQV HF TP + ++
Sbjct: 17 GYQIQPQHRTVQQEIEKALQ---KLHKGELVRVQASGRTDSTVHAKGQVIHFDTPLSLEE 73
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
+ ALN +LP DI +R++ EEFHAR+ + K Y Y++ D F+R++ Y
Sbjct: 74 WQ-WSNALNTMLPDDIVIRQVEKKTEEFHARYGVERKEYRYRVLLSKTADVFRRNYVYQY 132
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
PY L + +R+A Y++G H+F++F +A + D V+ I+ ++ E G L G+
Sbjct: 133 PYPLEISSIRKAIPYFIGTHDFTSFCSAKTDK--KDKVRTIYEIELIEQGDELIFRFVGN 190
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
GFLY VR + L+ +G+ L PD I ILA ++R+ K AP HGL L +NYN
Sbjct: 191 GFLYNMVRIIVGTLLSVGQGKLDPDSISEILAKQNRQFAGK---MAPGHGLYLWQVNYN 246
>R5NKZ2_9FIRM (tr|R5NKZ2) tRNA pseudouridine synthase A OS=Eubacterium sp.
CAG:603 GN=BN730_01511 PE=4 SV=1
Length = 251
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 90/238 (37%), Positives = 138/238 (57%), Gaps = 9/238 (3%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDKL 66
GWQ Q++ TV+ V+ R L+R + +D+ ++GASRTD+GVHA G VA F T F+
Sbjct: 23 GWQVQINGITVEEVINRELSR---MLGEDIAVIGASRTDSGVHALGNVAVFDT-FSKIPP 78
Query: 67 EDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHSP 126
E + ALN LP DIR+++ VP +FH R+ +K Y YKI N +P R + +
Sbjct: 79 EKMCFALNQRLPDDIRIQDSCEVPLDFHPRYCDSTKTYEYKILNRRFDNPVMRLYTHFVY 138
Query: 127 YKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGSG 186
L+ M+EAA+Y VG+H+F +F +A V D V+ I+ DV + ++++ + G+G
Sbjct: 139 MPLDYEKMQEAAKYLVGEHDFKSFCSARTQ--VTDTVRTIYSLDVSKEDDIIKIRISGNG 196
Query: 187 FLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
FLY VR + L+++G + PP+ ++ IL + DR AP GL L+ I YN
Sbjct: 197 FLYNMVRIIVGTLIKVGLKVYPPEYVKEILEACDRNVAGPK---APAKGLTLIGIVYN 251
>F7JKX0_9FIRM (tr|F7JKX0) tRNA pseudouridine synthase A OS=Lachnospiraceae
bacterium 1_4_56FAA GN=truA PE=3 SV=1
Length = 257
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 97/242 (40%), Positives = 141/242 (58%), Gaps = 13/242 (5%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVT--PFNYD 64
GWQ Q + TV+ V+ RAL+ T + + ++GASRTD+GVHA G VA F T P D
Sbjct: 17 GWQVQPNGITVEEVLNRALSALTGTK---VNVIGASRTDSGVHARGNVAIFDTDSPIPPD 73
Query: 65 KLEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYH 124
+ I A+N LP DI V + VP+++H R+ K Y Y I N + DP +R+ Y
Sbjct: 74 R---ISYAVNQKLPDDIVVVKSEEVPKDWHPRYQNSVKTYEYHILNARMPDPTRRYTTYF 130
Query: 125 SPYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEG 184
Y L+ MR+AA Y VG+H+F++F N H D V D V+ I+ V++ G L + V G
Sbjct: 131 VSYHLDLEQMRKAAGYLVGEHDFASFCNI-HTD-VEDTVRTIYELTVEKSGEDLTIRVRG 188
Query: 185 SGFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
+GFLY VR +A L+Q+G+ P+ ++ IL ++DR+ + APPHGL L+ I Y
Sbjct: 189 NGFLYNMVRIIAGTLLQVGRGFYTPEDVRGILETKDRESA---GVTAPPHGLMLMRIEYE 245
Query: 245 ES 246
+
Sbjct: 246 KD 247
>E0E4E9_9FIRM (tr|E0E4E9) tRNA pseudouridine synthase A OS=Peptostreptococcus
stomatis DSM 17678 GN=truA PE=3 SV=1
Length = 253
Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 95/242 (39%), Positives = 136/242 (56%), Gaps = 13/242 (5%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFV--TPFNYD 64
GWQ Q P +Q +E A T+A +K++ + G+ RTDAGVHA GQVA+F T D
Sbjct: 19 GWQKQPDSPGIQGELEYACTQA--FNKKNINITGSGRTDAGVHALGQVANFTVDTTIPVD 76
Query: 65 KLEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYH 124
K+ ++ LN LP DI V V EFHAR SA K Y Y+IY I PF + FAY
Sbjct: 77 KIPEV---LNNRLPKDIAVLRAQEVKSEFHARHSAHKKTYRYQIYPSRIRSPFLKDFAYQ 133
Query: 125 SPYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEG 184
Y L+ M+E + +G+H+F F ++ + + V+ I+R D+ + G L+ +EVEG
Sbjct: 134 VKYDLDLDRMKEEIIHLLGQHDFKGFMSSGSD--IKSTVRTIYRADIYKRGDLIVIEVEG 191
Query: 185 SGFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
+GFLY VR +A +V IG+ + ++ I+ S R A+ APP GL LV ++Y
Sbjct: 192 NGFLYNMVRIIAGTMVDIGRGKITES-LRDIIGSGVR---ARAGHTAPPQGLFLVGVDYP 247
Query: 245 ES 246
E
Sbjct: 248 ED 249
>F8L5L1_SIMNZ (tr|F8L5L1) tRNA pseudouridine synthase A OS=Simkania negevensis
(strain ATCC VR-1471 / Z) GN=truA2 PE=3 SV=1
Length = 247
Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 92/240 (38%), Positives = 138/240 (57%), Gaps = 14/240 (5%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFV--TPFNYD 64
GWQ +++ ++ L K+ ++++ L ASRTDAGVHA QV +F P N
Sbjct: 18 GWQASNVGVSIEGTLKEVLE---KILQQEVQLQAASRTDAGVHAEAQVVNFFLEKPRN-- 72
Query: 65 KLEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYH 124
LE +H +LN LLP DIRV + P++FH +K K YHY++ + PF R FA+H
Sbjct: 73 -LEHLHKSLNQLLPKDIRVAIVEEAPDDFHPTLKSKGKEYHYRLTRSHVQLPFDRLFAWH 131
Query: 125 SPYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVP-DPVKHIFRFDVKEMGALLQLEVE 183
P+ L+ A M A ++++GKH+F AF NA+ D P D ++ ++R D+ L+ E+
Sbjct: 132 YPFSLDLAKMETATKFFIGKHDFQAFGNAA--DPKPKDTIRTLYRLDIISSEEELRFEIH 189
Query: 184 GSGFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINY 243
G+ FLY+ VRN+ LV IG L + + ++AS+DR LA + AP HGL L + Y
Sbjct: 190 GNNFLYKMVRNLVGTLVYIGAGKLSLEEAEKLIASKDRT-LA--GMTAPAHGLLLKKVFY 246
>R6NSJ1_9FIRM (tr|R6NSJ1) tRNA pseudouridine synthase A 2 OS=Ruminococcus sp.
CAG:55 GN=BN703_01144 PE=4 SV=1
Length = 250
Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 93/237 (39%), Positives = 132/237 (55%), Gaps = 9/237 (3%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDKL 66
GWQ Q PT++ + +A++R TK +++ ++GASRTDAGVHA G VA F T
Sbjct: 17 GWQVQPEVPTIEGELNQAISRLTK---EEIIVIGASRTDAGVHAKGNVAVFDTESTI-PA 72
Query: 67 EDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHSP 126
+ ALN LLP DI V V ++H R K Y YKI N DP +R YH
Sbjct: 73 DRFAYALNPLLPEDIVVVASDEVEADWHPRHCDTEKTYEYKILNSKFPDPMRRRDTYHVS 132
Query: 127 YKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGSG 186
+ L+ MREAA Y G+H+F +F N V D V+ I+ +V++ L+ + V G+G
Sbjct: 133 FDLDLEKMREAAGYLKGEHDFKSFCNVHTQ--VEDTVRTIYDLEVEKEEELITIRVRGNG 190
Query: 187 FLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINY 243
FLY VR +A L+ +G+ A+ P+ I IL ++DR+ + PP GL LV I+Y
Sbjct: 191 FLYNMVRILAGTLIGVGRGAIAPEQIPAILEAKDRQ---AAGMTVPPQGLRLVKIDY 244
>B1V2T0_CLOPF (tr|B1V2T0) tRNA pseudouridine synthase A OS=Clostridium
perfringens D str. JGS1721 GN=truA PE=3 SV=1
Length = 248
Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 91/241 (37%), Positives = 131/241 (54%), Gaps = 13/241 (5%)
Query: 7 GWQYQMSP----PTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFN 62
GWQ Q TVQ +E+ LT+ T +++ L+G RTD+GVHA VA+F T +
Sbjct: 17 GWQKQNQKGSNVSTVQDKLEKVLTKMTS---EEIQLIGCGRTDSGVHAKNYVANFKTN-S 72
Query: 63 YDKLEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFA 122
LE I +N LP DIR+ EI E FHARF+ KSK Y Y I N+ D F R +A
Sbjct: 73 LMTLEQIIEYINEYLPEDIRITEIREASERFHARFNVKSKTYEYTIDNNKFKDVFLRKYA 132
Query: 123 YHSPYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEV 182
+H KL+ M E A+Y +G H+F +F + + ++ I + E +L +++
Sbjct: 133 WHVEEKLDLEAMEEGAKYLLGTHDFKSFTSLKSKN--KSTLRTINSIEFHENNNILSIKI 190
Query: 183 EGSGFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSIN 242
G+GFL VR + LV +G + P I IL +++R AK + AP HGLCL+ +N
Sbjct: 191 NGNGFLLNMVRIIVGTLVDVGLGKIEPKYINDILEAKER---AKASEKAPAHGLCLLELN 247
Query: 243 Y 243
Y
Sbjct: 248 Y 248
>A8MLH4_ALKOO (tr|A8MLH4) tRNA pseudouridine synthase A OS=Alkaliphilus
oremlandii (strain OhILAs) GN=truA PE=3 SV=1
Length = 248
Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 97/242 (40%), Positives = 137/242 (56%), Gaps = 9/242 (3%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDK 65
SGWQ Q + T+Q + +AL KL+ KD+ + G+ RTDAGVHA+GQVA F+ N
Sbjct: 16 SGWQVQPNAITIQEEIMKALK---KLEGKDVVIHGSGRTDAGVHAYGQVATFLMERNI-P 71
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
+E + A+N LP DI + + VP +FHAR+SA K Y Y IY R+++YH
Sbjct: 72 VERLPLAMNSNLPKDITIIDAKEVPMDFHARYSAIGKRYIYHIYESRYRSAILRNYSYHI 131
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
YKL+ + M EA++ +G H+F F S+ V D V+ I + K G + + +EG
Sbjct: 132 NYKLDRSKMMEASKLLIGTHDFRGF--MSNGSSVEDTVRTIKSLEFKSDGENIYMIIEGD 189
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYNE 245
GFLY VR + LVQIG P + I+ IL ++DR LA + APP GL L + Y
Sbjct: 190 GFLYNMVRIITGTLVQIGAGNKPLEQIEKILKTKDR-SLAGHT--APPQGLFLDKVFYPL 246
Query: 246 SH 247
+H
Sbjct: 247 TH 248
>F7YYT8_9THEM (tr|F7YYT8) tRNA pseudouridine synthase A OS=Thermotoga thermarum
DSM 5069 GN=truA PE=3 SV=1
Length = 260
Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 99/241 (41%), Positives = 139/241 (57%), Gaps = 10/241 (4%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDKL 66
G+Q Q TVQ V+E+AL R K + + +V A RTD GVHA GQV F P++
Sbjct: 17 GFQLQKDVRTVQGVIEQALERIFKTK---ISVVCAGRTDTGVHAVGQVIAFDCPYDIPP- 72
Query: 67 EDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHSP 126
E++ ALN LP D+ VR++ VP++F+ RF A +IYHY IYN + F R + + P
Sbjct: 73 ENMKNALNANLPDDVYVRKVIEVPKDFNPRFCATRRIYHYFIYNGKTPNVFTRKYYWWFP 132
Query: 127 YKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEM-GALLQLEVEGS 185
Y+L+ MREAA+Y G+H+F AFA N+ V+ I+R + + L+ + VEG
Sbjct: 133 YELDVNKMREAAKYLEGEHDFKAFAKTEGNE--KSTVRTIYRIRILRLRKNLILIRVEGR 190
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYNE 245
FL R VRN+ LV++G P I+ IL SR+R LA AP HGL L S+ ++
Sbjct: 191 SFLRRMVRNIVGALVKVGVGVWEPIKIKEILESRNR-SLAPAT--APAHGLYLYSVEFSL 247
Query: 246 S 246
S
Sbjct: 248 S 248
>R0PN43_BACAT (tr|R0PN43) tRNA pseudouridine synthase A OS=Bacillus atrophaeus
UCMB-5137 GN=D068_01320 PE=4 SV=1
Length = 247
Score = 160 bits (406), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 94/239 (39%), Positives = 137/239 (57%), Gaps = 7/239 (2%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDK 65
+G+Q Q TVQ +E+AL K + K + ++ + RTD+GVHA GQV HF T +
Sbjct: 15 NGYQVQPGKRTVQAELEKALAILHKSEDK-VPVISSGRTDSGVHAAGQVIHFDTQLSI-P 72
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
E ALN LLP DI V+ + FHARFSA K Y Y +Y + D F+RH+AYH
Sbjct: 73 AERWPYALNALLPGDIAVKTAEHADDGFHARFSAIKKEYRYFVYTEKHPDVFKRHYAYHF 132
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
Y+LN MREA+++ +G H+F++F +A N V D V+ I+ D + LQ+ + GS
Sbjct: 133 SYRLNVQKMREASEHLIGTHDFTSFCSA--NTEVRDKVRTIYELDWTDTDDGLQMRIVGS 190
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
GFLY VR +A L+ +G D ++ +L ++DR+ + AP HGL L + Y+
Sbjct: 191 GFLYNMVRIIAGTLLDVGTGKFSADDVKGMLDAKDREAAGRT---APGHGLYLWHVYYD 246
>L0BJ96_BACAM (tr|L0BJ96) tRNA pseudouridine synthase A OS=Bacillus
amyloliquefaciens subsp. plantarum AS43.3 GN=truA PE=3
SV=1
Length = 247
Score = 160 bits (406), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 95/239 (39%), Positives = 135/239 (56%), Gaps = 7/239 (2%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDK 65
+G+Q Q TVQ +E+AL K + + + + RTD+ VHA GQV HF TP +
Sbjct: 15 NGYQVQPGKRTVQSELEKALAVIHKTDGR-VPVYSSGRTDSDVHAAGQVIHFDTPLSI-P 72
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
E ALN LLP DI V+ + FHARFSA K Y Y +Y + D F+RH+AYH
Sbjct: 73 AEKWPFALNALLPDDIAVKTAEIADDGFHARFSAVQKEYRYFVYTEKHPDVFKRHYAYHF 132
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
Y LN MREA+++ VG H+F++F A + V D V+ I+ D E G LQ+ + G+
Sbjct: 133 AYPLNVQKMREASRHLVGTHDFTSFCAA--DTAVQDKVRTIYELDWTETGDGLQMRITGN 190
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
GFLY VR +A L+ G P+ ++ +L ++DR+ + AP HGL L S+ Y+
Sbjct: 191 GFLYNMVRIIAGTLLDTGAGKFSPEDVKAMLEAKDREAAGRT---APGHGLYLWSVCYD 246
>M8CVQ8_THETY (tr|M8CVQ8) Pseudouridylate synthase I OS=Thermoanaerobacter
thermohydrosulfuricus WC1 GN=TthWC1_2051 PE=4 SV=1
Length = 244
Score = 160 bits (406), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 92/237 (38%), Positives = 134/237 (56%), Gaps = 9/237 (3%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDKL 66
GWQYQ + TVQ V+++A+ + T +++ L+GASRTD GVHA QVA+F T
Sbjct: 17 GWQYQENAVTVQEVLQKAIKKVTG---EEVNLIGASRTDTGVHALYQVANFRTNTKIPA- 72
Query: 67 EDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHSP 126
E + ALN +LP DI V + V + FHAR+SAK K Y Y I N P R++ +H
Sbjct: 73 EKLPYALNSVLPDDIVVVQAKDVEDSFHARYSAKRKRYKYIILNRKFPMPTMRNYCWHIG 132
Query: 127 YKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGSG 186
Y LN M++AA Y +G H+FSAF + + ++ ++ +++ + +E+E +G
Sbjct: 133 YPLNIEEMKKAASYLIGTHDFSAFRASGSSK--TSTIRTVYDLTIEKNEDFINIEIEANG 190
Query: 187 FLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINY 243
FLY VR + LV +G + D + IL SRDR K + APP GL L+ I Y
Sbjct: 191 FLYNMVRIIVGTLVYVGLGKIKEDEVYDILKSRDR---TKAGVTAPPQGLYLIKIMY 244
>I9ACI7_9THEO (tr|I9ACI7) tRNA pseudouridine synthase A OS=Thermoanaerobacter
siderophilus SR4 GN=truA PE=3 SV=1
Length = 244
Score = 160 bits (406), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 92/237 (38%), Positives = 134/237 (56%), Gaps = 9/237 (3%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDKL 66
GWQYQ + TVQ V+++A+ + T +++ L+GASRTD GVHA QVA+F T
Sbjct: 17 GWQYQENAVTVQEVLQKAIKKVTG---EEVNLIGASRTDTGVHALYQVANFRTNTKIPA- 72
Query: 67 EDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHSP 126
E + ALN +LP DI V + V + FHAR+SAK K Y Y I N P R++ +H
Sbjct: 73 EKLPYALNSVLPDDIVVVQAKDVEDSFHARYSAKRKRYKYIILNRKFPMPTMRNYCWHIG 132
Query: 127 YKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGSG 186
Y LN M++AA Y +G H+FSAF + + ++ ++ +++ + +E+E +G
Sbjct: 133 YPLNIEEMKKAASYLIGTHDFSAFRASGSSK--TSTIRTVYDLTIEKNEDFINIEIEANG 190
Query: 187 FLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINY 243
FLY VR + LV +G + D + IL SRDR K + APP GL L+ I Y
Sbjct: 191 FLYNMVRIIVGTLVYVGLGKIKEDEVYDILKSRDR---TKAGVTAPPQGLYLIKIMY 244
>J9A2E2_BACCE (tr|J9A2E2) tRNA pseudouridine synthase A OS=Bacillus cereus
BAG6X1-1 GN=truA PE=3 SV=1
Length = 247
Score = 160 bits (406), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 93/239 (38%), Positives = 137/239 (57%), Gaps = 10/239 (4%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGAS-RTDAGVHAWGQVAHFVTPFNYDK 65
G+Q Q TVQ +E+AL KL + +L V AS RTD+ VHA GQV HF TP + ++
Sbjct: 17 GYQIQPQHRTVQQEIEKALQ---KLHKGELVRVQASGRTDSTVHAKGQVIHFDTPLSLEE 73
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
+ ALN +LP DI +R++ EEFHAR+ + K Y Y++ D F+R++ Y
Sbjct: 74 WQ-WSNALNTMLPDDIVIRQVEKKTEEFHARYGVERKEYRYRVLLSKTADVFRRNYVYQY 132
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
PY L + +R+A Y++G H+F++F +A + D V+ I+ ++ E G L G+
Sbjct: 133 PYPLEISSIRKAIPYFIGTHDFTSFCSAKTDK--KDKVRTIYEIELIEQGDELIFRFVGN 190
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
GFLY VR + L+ +G+ L PD I ILA ++R+ K AP HGL L +NYN
Sbjct: 191 GFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGK---MAPGHGLYLWQVNYN 246
>J8RSN2_BACCE (tr|J8RSN2) tRNA pseudouridine synthase A OS=Bacillus cereus
BAG2X1-2 GN=truA PE=3 SV=1
Length = 247
Score = 160 bits (406), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 93/239 (38%), Positives = 137/239 (57%), Gaps = 10/239 (4%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGAS-RTDAGVHAWGQVAHFVTPFNYDK 65
G+Q Q TVQ +E+AL KL + +L V AS RTD+ VHA GQV HF TP + ++
Sbjct: 17 GYQIQPQHRTVQQEIEKALQ---KLHKGELVRVQASGRTDSTVHAKGQVIHFDTPLSLEE 73
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
+ ALN +LP DI +R++ EEFHAR+ + K Y Y++ D F+R++ Y
Sbjct: 74 WQ-WSNALNTMLPDDIVIRQVEKKTEEFHARYGVERKEYRYRVLLSKTADVFRRNYVYQY 132
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
PY L + +R+A Y++G H+F++F +A + D V+ I+ ++ E G L G+
Sbjct: 133 PYPLEISSIRKAIPYFIGTHDFTSFCSAKTDK--KDKVRTIYEIELIEQGDELIFRFVGN 190
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
GFLY VR + L+ +G+ L PD I ILA ++R+ K AP HGL L +NYN
Sbjct: 191 GFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGK---MAPGHGLYLWQVNYN 246
>H3RRD5_9LACO (tr|H3RRD5) tRNA pseudouridine synthase A OS=Lactobacillus mucosae
LM1 GN=truA PE=3 SV=1
Length = 264
Score = 160 bits (405), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 93/244 (38%), Positives = 146/244 (59%), Gaps = 8/244 (3%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDK 65
SG+Q Q + TV+ ++ A+ + K L ++G+ RTDAGVHA QVAHF P+
Sbjct: 16 SGFQIQPNKRTVEQTLKNAVNKIAKNPEPPLSVIGSGRTDAGVHALNQVAHFDCPYKLGN 75
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
+ + ALN LLP DI V++ V +FHARF+A SK Y Y++ ++PF+R++ H
Sbjct: 76 -DSMRKALNSLLPLDIIVKKAELVSPDFHARFNAHSKHYRYRVDQSDFVNPFKRNYTAHF 134
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDV--KEMGALLQLEVE 183
Y ++ A M++AAQ VG+H+F++F AS + + + V+ I++ DV E + +
Sbjct: 135 KYPVDVAKMQKAAQDLVGEHDFTSFV-ASGSQALSN-VRTIYQADVHRDEANNEIVFDFV 192
Query: 184 GSGFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINY 243
G+GFLY QVR M A L++IG P D + +LA++DR + + AP GL LVS++Y
Sbjct: 193 GNGFLYNQVRIMVAFLLEIGSNQRPVDDVIRVLAAKDRNQA---RMTAPASGLYLVSVDY 249
Query: 244 NESH 247
+ +
Sbjct: 250 GDQN 253
>F4A2V1_MAHA5 (tr|F4A2V1) tRNA pseudouridine synthase A OS=Mahella australiensis
(strain DSM 15567 / CIP 107919 / 50-1 BON) GN=truA PE=3
SV=1
Length = 245
Score = 160 bits (405), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 92/238 (38%), Positives = 130/238 (54%), Gaps = 9/238 (3%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDK 65
+GWQYQ + T+Q VVE A+ L + ++ A RTD GVHA GQV +F T N
Sbjct: 17 AGWQYQKNALTIQQVVEEAIE---SLTGQHSTVIAAGRTDRGVHALGQVTNFKTESNIPT 73
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
++A LN +LP DIRV + V FHARF AK K+Y Y I+N R+F+ H
Sbjct: 74 DRWLYA-LNAVLPEDIRVIDAQDVLPSFHARFDAKGKLYRYIIWNAPYSSALLRNFSLHV 132
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
L++ M+ AA Y+VG H+FS+F + V D V++I+ ++ G ++ + + G
Sbjct: 133 ARPLDADAMKRAALYFVGTHDFSSFQASGST--VRDTVRNIWDISIQTEGKMISISISGD 190
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINY 243
GFLY VR M L+ +G + + IL +RDRK K A PHGL LV + Y
Sbjct: 191 GFLYNMVRIMVGTLIDVGIGKITACDAKLILEARDRKRAGKT---AGPHGLYLVEVYY 245
>E1UK02_BACAS (tr|E1UK02) tRNA pseudouridine synthase A OS=Bacillus
amyloliquefaciens (strain ATCC 23350 / DSM 7 / BCRC
11601 / NBRC 15535 / NRRL B-14393) GN=truA PE=3 SV=1
Length = 247
Score = 160 bits (404), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 93/239 (38%), Positives = 135/239 (56%), Gaps = 7/239 (2%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDK 65
+G+Q Q TVQ +E+AL K + + + + RTD+ VHA GQV HF TP +
Sbjct: 15 NGYQVQPGKRTVQSELEKALAVIHKTDGR-VPVYSSGRTDSDVHAAGQVIHFDTPLSI-P 72
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
E ALN LLP DI V+ + FHARFSA K Y Y +Y + D F+RH+AYH
Sbjct: 73 AEKWPFALNALLPDDIAVKTAEIADDGFHARFSAVQKEYRYFVYTEKHPDVFKRHYAYHF 132
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
Y+LN MREA+++ +G H+F++F + V D V+ I+ + E G LQ+ + G+
Sbjct: 133 AYQLNVQKMREASRHLIGTHDFTSFCAV--DTAVQDKVRTIYELEWTETGDGLQMRITGN 190
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
GFLY VR +A L+ G PD ++ +L ++DR+ + AP HGL L S+ Y+
Sbjct: 191 GFLYNMVRIIAGTLLDTGAGKFSPDDVKAMLEAKDREAAGRT---APGHGLYLWSVCYD 246
>R4KK16_9FIRM (tr|R4KK16) Pseudouridylate synthase I OS=Desulfotomaculum
gibsoniae DSM 7213 GN=Desgi_0398 PE=4 SV=1
Length = 247
Score = 160 bits (404), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 92/228 (40%), Positives = 127/228 (55%), Gaps = 8/228 (3%)
Query: 16 TVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDKLEDIHAALNG 75
TVQ V+E L R L + + + GA RTDAGVHA GQV +F +E I A+NG
Sbjct: 28 TVQEVLELCLGR---LAGRRVQVTGAGRTDAGVHALGQVVNFDAAGWPIPVERIPLAMNG 84
Query: 76 LLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHSPYKLNSAVMR 135
LLP D+ V E V ++FHARFSA++KIY Y I+N+ I PF R ++ P LN M
Sbjct: 85 LLPGDVVVTEAREVGQDFHARFSARAKIYRYTIWNNRIPSPFNRLYSSFWPVPLNDEAMS 144
Query: 136 EAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGSGFLYRQVRNM 195
+A + +G+H+F F + V V+ ++R +V G L+ +G GFLY VR M
Sbjct: 145 QACDHLLGRHDFKCFQASGAT--VKTTVRTLYRAEVIREGTLVHFVFKGDGFLYNMVRIM 202
Query: 196 AALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINY 243
L+Q+G PD I+++L SR R A+ PP GLCL + Y
Sbjct: 203 TGTLLQVGMGKASPDSIRNLLESRQR---AQAGPTMPPQGLCLEHVEY 247
>G0IEP0_BACAM (tr|G0IEP0) tRNA pseudouridine synthase A OS=Bacillus
amyloliquefaciens XH7 GN=truA PE=3 SV=1
Length = 247
Score = 160 bits (404), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 93/239 (38%), Positives = 135/239 (56%), Gaps = 7/239 (2%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDK 65
+G+Q Q TVQ +E+AL K + + + + RTD+ VHA GQV HF TP +
Sbjct: 15 NGYQVQPGKRTVQSELEKALAVIHKTDGR-VPVYSSGRTDSDVHAAGQVIHFDTPLSI-P 72
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
E ALN LLP DI V+ + FHARFSA K Y Y +Y + D F+RH+AYH
Sbjct: 73 AEKWPFALNALLPDDIAVKTAEIADDGFHARFSAVQKEYRYFVYTEKHPDVFKRHYAYHF 132
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
Y+LN MREA+++ +G H+F++F + V D V+ I+ + E G LQ+ + G+
Sbjct: 133 AYQLNVQKMREASRHLIGTHDFTSFCAV--DTAVQDKVRTIYELEWTETGDGLQMRITGN 190
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
GFLY VR +A L+ G PD ++ +L ++DR+ + AP HGL L S+ Y+
Sbjct: 191 GFLYNMVRIIAGTLLDTGAGKFSPDDVKAMLEAKDREAAGRT---APGHGLYLWSVCYD 246
>F4ERX2_BACAM (tr|F4ERX2) tRNA pseudouridine synthase A OS=Bacillus
amyloliquefaciens GN=truA PE=3 SV=1
Length = 247
Score = 160 bits (404), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 93/239 (38%), Positives = 135/239 (56%), Gaps = 7/239 (2%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDK 65
+G+Q Q TVQ +E+AL K + + + + RTD+ VHA GQV HF TP +
Sbjct: 15 NGYQVQPGKRTVQSELEKALAVIHKTDGR-VPVYSSGRTDSDVHAAGQVIHFDTPLSI-P 72
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
E ALN LLP DI V+ + FHARFSA K Y Y +Y + D F+RH+AYH
Sbjct: 73 AEKWPFALNALLPDDIAVKTAEIADDGFHARFSAVQKEYRYFVYTEKHPDVFKRHYAYHF 132
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
Y+LN MREA+++ +G H+F++F + V D V+ I+ + E G LQ+ + G+
Sbjct: 133 AYQLNVQKMREASRHLIGTHDFTSFCAV--DTAVQDKVRTIYELEWTETGDGLQMRITGN 190
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
GFLY VR +A L+ G PD ++ +L ++DR+ + AP HGL L S+ Y+
Sbjct: 191 GFLYNMVRIIAGTLLDTGAGKFSPDDVKAMLEAKDREAAGRT---APGHGLYLWSVCYD 246
>F4E1T5_BACAM (tr|F4E1T5) tRNA pseudouridine synthase A OS=Bacillus
amyloliquefaciens TA208 GN=truA PE=3 SV=1
Length = 247
Score = 160 bits (404), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 93/239 (38%), Positives = 135/239 (56%), Gaps = 7/239 (2%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDK 65
+G+Q Q TVQ +E+AL K + + + + RTD+ VHA GQV HF TP +
Sbjct: 15 NGYQVQPGKRTVQSELEKALAVIHKTDGR-VPVYSSGRTDSDVHAAGQVIHFDTPLSI-P 72
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
E ALN LLP DI V+ + FHARFSA K Y Y +Y + D F+RH+AYH
Sbjct: 73 AEKWPFALNALLPDDIAVKTAEIADDGFHARFSAVQKEYRYFVYTEKHPDVFKRHYAYHF 132
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
Y+LN MREA+++ +G H+F++F + V D V+ I+ + E G LQ+ + G+
Sbjct: 133 AYQLNVQKMREASRHLIGTHDFTSFCAV--DTAVQDKVRTIYELEWTETGDGLQMRITGN 190
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
GFLY VR +A L+ G PD ++ +L ++DR+ + AP HGL L S+ Y+
Sbjct: 191 GFLYNMVRIIAGTLLDTGAGKFSPDDVKAMLEAKDREAAGRT---APGHGLYLWSVCYD 246
>E8UV17_THEBF (tr|E8UV17) tRNA pseudouridine synthase A OS=Thermoanaerobacter
brockii subsp. finnii (strain ATCC 43586 / DSM 3389 /
AKO-1) GN=truA PE=3 SV=1
Length = 244
Score = 159 bits (403), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 90/237 (37%), Positives = 133/237 (56%), Gaps = 9/237 (3%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDKL 66
GWQYQ + TVQ V+++A+ + T +++ L+GASRTD GVHA QVA+F T
Sbjct: 17 GWQYQKNAVTVQEVLQKAIKKVTG---EEVNLIGASRTDTGVHALYQVANFKTNTKIPA- 72
Query: 67 EDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHSP 126
E + ALN +LP DI V + V + FHAR+SAK K Y Y I N P R++ +H
Sbjct: 73 EKLPYALNSVLPDDIVVVQAKDVEDSFHARYSAKRKRYKYIILNRKFQMPTMRNYCWHIS 132
Query: 127 YKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGSG 186
Y LN M++AA Y +G H+FSAF + + ++ ++ +++ + +E+E +G
Sbjct: 133 YPLNIEEMKKAASYLIGTHDFSAFKASGSSK--TSTIRTVYDLTIEKNEDFINIEIEANG 190
Query: 187 FLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINY 243
FLY VR + L +G + D + IL S+DR K + APP GL L+ I Y
Sbjct: 191 FLYNMVRIIVGTLSYVGLGKIKEDEVYDILKSKDR---TKAGITAPPQGLYLIKIIY 244
>E1SZF9_THESX (tr|E1SZF9) tRNA pseudouridine synthase A OS=Thermoanaerobacter sp.
(strain X513) GN=truA PE=3 SV=1
Length = 244
Score = 159 bits (403), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 90/237 (37%), Positives = 133/237 (56%), Gaps = 9/237 (3%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDKL 66
GWQYQ + TVQ V+++A+ + T +++ L+GASRTD GVHA QVA+F T
Sbjct: 17 GWQYQKNAVTVQEVLQKAIKKVTG---EEVNLIGASRTDTGVHALYQVANFKTNTKIPA- 72
Query: 67 EDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHSP 126
E + ALN +LP DI V + V + FHAR+SAK K Y Y I N P R++ +H
Sbjct: 73 EKLPYALNSVLPDDIVVVQAKDVEDSFHARYSAKRKRYKYIILNRKFQMPTMRNYCWHIS 132
Query: 127 YKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGSG 186
Y LN M++AA Y +G H+FSAF + + ++ ++ +++ + +E+E +G
Sbjct: 133 YPLNIEEMKKAASYLIGTHDFSAFKASGSSK--TSTIRTVYDLTIEKNEDFINIEIEANG 190
Query: 187 FLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINY 243
FLY VR + L +G + D + IL S+DR K + APP GL L+ I Y
Sbjct: 191 FLYNMVRIIVGTLSYVGLGKIKEDEVYDILKSKDR---TKAGITAPPQGLYLIKIIY 244
>E1FFI5_9THEO (tr|E1FFI5) tRNA pseudouridine synthase A OS=Thermoanaerobacter sp.
X561 GN=truA PE=3 SV=1
Length = 244
Score = 159 bits (403), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 90/237 (37%), Positives = 133/237 (56%), Gaps = 9/237 (3%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDKL 66
GWQYQ + TVQ V+++A+ + T +++ L+GASRTD GVHA QVA+F T
Sbjct: 17 GWQYQKNAVTVQEVLQKAIKKVTG---EEVNLIGASRTDTGVHALYQVANFKTNTKIPA- 72
Query: 67 EDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHSP 126
E + ALN +LP DI V + V + FHAR+SAK K Y Y I N P R++ +H
Sbjct: 73 EKLPYALNSVLPDDIVVVQAKDVEDSFHARYSAKRKRYKYIILNRKFQMPTMRNYCWHIS 132
Query: 127 YKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGSG 186
Y LN M++AA Y +G H+FSAF + + ++ ++ +++ + +E+E +G
Sbjct: 133 YPLNIEEMKKAASYLIGTHDFSAFKASGSSK--TSTIRTVYDLTIEKNEDFINIEIEANG 190
Query: 187 FLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINY 243
FLY VR + L +G + D + IL S+DR K + APP GL L+ I Y
Sbjct: 191 FLYNMVRIIVGTLSYVGLGKIKEDEVYDILKSKDR---TKAGITAPPQGLYLIKIIY 244
>C7IUU4_THEET (tr|C7IUU4) tRNA pseudouridine synthase A OS=Thermoanaerobacter
ethanolicus CCSD1 GN=truA PE=3 SV=1
Length = 244
Score = 159 bits (403), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 90/237 (37%), Positives = 133/237 (56%), Gaps = 9/237 (3%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDKL 66
GWQYQ + TVQ V+++A+ + T +++ L+GASRTD GVHA QVA+F T
Sbjct: 17 GWQYQKNAVTVQEVLQKAIKKVTG---EEVNLIGASRTDTGVHALYQVANFKTNTKIPA- 72
Query: 67 EDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHSP 126
E + ALN +LP DI V + V + FHAR+SAK K Y Y I N P R++ +H
Sbjct: 73 EKLPYALNSVLPDDIVVVQAKDVEDSFHARYSAKRKRYKYIILNRKFQMPTMRNYCWHIS 132
Query: 127 YKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGSG 186
Y LN M++AA Y +G H+FSAF + + ++ ++ +++ + +E+E +G
Sbjct: 133 YPLNIEEMKKAASYLIGTHDFSAFKASGSSK--TSTIRTVYDLTIEKNEDFINIEIEANG 190
Query: 187 FLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINY 243
FLY VR + L +G + D + IL S+DR K + APP GL L+ I Y
Sbjct: 191 FLYNMVRIIVGTLSYVGLGKIKEDEVYDILKSKDR---TKAGITAPPQGLYLIKIIY 244
>C2Q680_BACCE (tr|C2Q680) tRNA pseudouridine synthase A OS=Bacillus cereus
R309803 GN=truA PE=3 SV=1
Length = 252
Score = 159 bits (403), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 93/239 (38%), Positives = 136/239 (56%), Gaps = 10/239 (4%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGAS-RTDAGVHAWGQVAHFVTPFNYDK 65
G+Q Q TVQ +E+AL KL + +L V AS RTD+ VHA GQV HF TP + ++
Sbjct: 22 GYQIQPQHRTVQQEIEKALQ---KLHKGELVRVQASGRTDSTVHAKGQVIHFDTPLSLEE 78
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
+ ALN +LP DI +R++ EEFHAR+ + K Y Y++ D F+R++ Y
Sbjct: 79 WQ-WSNALNTMLPDDIVIRQVEKKTEEFHARYGVERKEYRYRVLLSKTADVFRRNYVYQY 137
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
PY L +R+A Y++G H+F++F +A + D V+ I+ ++ E G L G+
Sbjct: 138 PYPLEINSIRKAIPYFIGTHDFTSFCSAKTDK--KDKVRTIYEIELIEQGDELIFRFVGN 195
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
GFLY VR + L+ +G+ L PD I ILA ++R+ K AP HGL L +NYN
Sbjct: 196 GFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGK---MAPGHGLYLWQVNYN 251
>C3AYY4_BACMY (tr|C3AYY4) tRNA pseudouridine synthase A OS=Bacillus mycoides
Rock3-17 GN=truA PE=3 SV=1
Length = 245
Score = 159 bits (403), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 88/238 (36%), Positives = 137/238 (57%), Gaps = 10/238 (4%)
Query: 7 GWQ-YQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDK 65
GWQ + T+Q +E L+ T +++ ++G SRTDAGVHA QVA+F N +
Sbjct: 17 GWQRLGNNDNTIQGKIESVLSEMTG---REIEIIGCSRTDAGVHALHQVANFKIDENLPE 73
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
L+ + LN LP+DI + ++ V E FHAR+++KSK Y YKI+N+ +PF R ++ H
Sbjct: 74 LK-VKKYLNQYLPNDISITDVELVSERFHARYNSKSKTYLYKIWNEEHTNPFMRKYSMHV 132
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
KLN M++AAQY +G H+F+AF+NA V+ I+ DV E +Q+ V G+
Sbjct: 133 GKKLNIENMQKAAQYLIGSHDFTAFSNAKSKK--KSMVREIYMLDVVESEGFIQIRVNGN 190
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINY 243
GFL+ VR + LV++G L ++I IL ++ R ++ A GL L +++
Sbjct: 191 GFLHNMVRKIVGALVEVGLGQLDAEVIPQILEAKQRNQI---NCLADASGLYLEKVDF 245
>C3AH29_BACMY (tr|C3AH29) tRNA pseudouridine synthase A OS=Bacillus mycoides
Rock1-4 GN=truA PE=3 SV=1
Length = 245
Score = 159 bits (403), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 88/238 (36%), Positives = 137/238 (57%), Gaps = 10/238 (4%)
Query: 7 GWQ-YQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDK 65
GWQ + T+Q +E L+ T +++ ++G SRTDAGVHA QVA+F N +
Sbjct: 17 GWQRLGNNDNTIQGKIESVLSEMTG---REIEIIGCSRTDAGVHALHQVANFKIDENLPE 73
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
L+ + LN LP+DI + ++ V E FHAR+++KSK Y YKI+N+ +PF R ++ H
Sbjct: 74 LK-VKKYLNQYLPNDISITDVELVSERFHARYNSKSKTYLYKIWNEEHTNPFMRKYSMHV 132
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
KLN M++AAQY +G H+F+AF+NA V+ I+ DV E +Q+ V G+
Sbjct: 133 GKKLNIENMQKAAQYLIGSHDFTAFSNAKSKK--KSMVREIYMLDVVESEGFIQIRVNGN 190
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINY 243
GFL+ VR + LV++G L ++I IL ++ R ++ A GL L +++
Sbjct: 191 GFLHNMVRKIVGALVEVGLGQLDAEVIPQILEAKQRNQI---NCLADASGLYLEKVDF 245
>I8AF97_9BACI (tr|I8AF97) tRNA pseudouridine synthase A OS=Bacillus macauensis
ZFHKF-1 GN=truA PE=3 SV=1
Length = 245
Score = 159 bits (403), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 94/238 (39%), Positives = 134/238 (56%), Gaps = 10/238 (4%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGAS-RTDAGVHAWGQVAHFVTPFNYDK 65
G+Q Q S TVQ +E L K+ + + AS RTDAGVHA GQV H+ +
Sbjct: 17 GYQVQASGRTVQQEIETVLK---KMHKGLAVRIAASGRTDAGVHAIGQVIHWDSALTLAS 73
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
E ALN +LP DI + ++ V ++FHAR+ A K YHY ++ + + F RHFAYH
Sbjct: 74 -EAWKKALNAMLPHDIHIEKVERVNDDFHARYGAVKKTYHYHLHIGSEPNVFNRHFAYHF 132
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
PY L A MREA + G H+F++F++A V D V+ I+ ++V+E G L +V GS
Sbjct: 133 PYPLALAPMREAMERLCGTHDFTSFSSARST--VEDKVRTIYSYEVQERGQELIFKVTGS 190
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINY 243
GFLY VR M L+ +G+ + P I +L +++R+ K AP HGL L + Y
Sbjct: 191 GFLYNMVRIMTGTLLDVGQGRISPAAIDEMLLAKNREAAGK---TAPAHGLYLYEVQY 245
>A7GKW8_BACCN (tr|A7GKW8) tRNA pseudouridine synthase A OS=Bacillus cereus subsp.
cytotoxis (strain NVH 391-98) GN=truA PE=3 SV=1
Length = 260
Score = 159 bits (403), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 87/240 (36%), Positives = 140/240 (58%), Gaps = 14/240 (5%)
Query: 7 GWQ-YQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDK 65
GWQ + T+Q +E L+ ++ +++ ++G SRTDAGVHA QVA+F +K
Sbjct: 32 GWQRLGNNDNTIQGKIESVLS---EMIGQEIEIIGCSRTDAGVHALNQVANFKVD---EK 85
Query: 66 LED--IHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAY 123
L + + LN LP+DI + E+ VPE FHAR+++K+K Y YKI+N+ +PF R ++
Sbjct: 86 LVETKVKKYLNQYLPNDISITEVEQVPERFHARYNSKTKTYLYKIWNEEHTNPFMRKYSM 145
Query: 124 HSPYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVE 183
H P KLN M++AA Y++G H+F+AF+NA V+ I+ DV E +Q+ V
Sbjct: 146 HVPKKLNVENMKQAAHYFIGSHDFTAFSNAKSKK--KSMVREIYVLDVFESEGFIQIRVS 203
Query: 184 GSGFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINY 243
G+GFL+ VR + L+++G L + I IL ++ R ++ A +GL L +++
Sbjct: 204 GNGFLHNMVRKIVGALIEVGLGQLDAEAIPQILEAKQRNQI---NCLADANGLYLEKVDF 260
>C2P961_BACCE (tr|C2P961) tRNA pseudouridine synthase A OS=Bacillus cereus MM3
GN=truA PE=3 SV=1
Length = 252
Score = 159 bits (402), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 92/239 (38%), Positives = 137/239 (57%), Gaps = 10/239 (4%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGAS-RTDAGVHAWGQVAHFVTPFNYDK 65
G+Q Q TVQ +E+AL KL + +L V AS RTD+ VHA GQV HF TP + ++
Sbjct: 22 GYQIQPQHRTVQQEIEKALQ---KLHKGELVRVQASGRTDSTVHAKGQVIHFDTPLSLEE 78
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
+ ALN +LP DI ++++ EEFHAR+ + K Y Y++ D F+R++ Y
Sbjct: 79 WQ-WSNALNTMLPDDIVIKQVEKKTEEFHARYGVERKEYRYRVLLSKTADVFRRNYVYQY 137
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
PY L + +R+A Y++G H+F++F +A + D V+ I+ ++ E G L G+
Sbjct: 138 PYPLEISSIRKAIPYFIGTHDFTSFCSAKTDK--KDKVRTIYEIELIEQGDELIFRFVGN 195
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
GFLY VR + L+ +G+ L PD I ILA ++R+ K AP HGL L +NYN
Sbjct: 196 GFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGK---MAPGHGLYLWQVNYN 251
>D7DGM5_CHLTL (tr|D7DGM5) tRNA pseudouridine synthase A OS=Chlamydia trachomatis
serovar D (strain D-LC) GN=truA PE=3 SV=1
Length = 267
Score = 159 bits (402), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 96/249 (38%), Positives = 139/249 (55%), Gaps = 16/249 (6%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFN--Y 63
SGWQYQ + ++Q V+E L + + + ++ + RTDAGVHA GQ+AHF P + +
Sbjct: 17 SGWQYQPNALSIQEVLETILKKIAGFR---ISVISSGRTDAGVHAQGQIAHFHCPDHPHF 73
Query: 64 DKLEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAY 123
I LN LLP DI +R+ E+FH+RFSA +K Y Y + P R F +
Sbjct: 74 TDPRQIQKMLNALLPHDIVIRDAVMTDEDFHSRFSAIAKEYRYTLSLLPKPLPHHRLFCF 133
Query: 124 HSPYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVE 183
YKLN A M+EAAQY VG H+F++FAN ++ ++ D+ E L+ +
Sbjct: 134 SPRYKLNIARMQEAAQYLVGTHDFASFANLGRE--YSSTIRTLYTLDLSEQEHLVTVICR 191
Query: 184 GSGFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINY 243
G+GFLY+ VRN+ L+ IGK PP+ + +LA++DR+ K APP+GL L + Y
Sbjct: 192 GNGFLYKMVRNIVGALLDIGKGKYPPEHLLDMLATKDRR---KGPPSAPPYGLSLHHVCY 248
Query: 244 NESHLLPPP 252
PPP
Sbjct: 249 ------PPP 251
>D7DDT6_CHLTD (tr|D7DDT6) tRNA pseudouridine synthase A OS=Chlamydia trachomatis
serovar D (strain D-EC) GN=truA PE=3 SV=1
Length = 267
Score = 159 bits (402), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 96/249 (38%), Positives = 139/249 (55%), Gaps = 16/249 (6%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFN--Y 63
SGWQYQ + ++Q V+E L + + + ++ + RTDAGVHA GQ+AHF P + +
Sbjct: 17 SGWQYQPNALSIQEVLETILKKIAGFR---ISVISSGRTDAGVHAQGQIAHFHCPDHPHF 73
Query: 64 DKLEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAY 123
I LN LLP DI +R+ E+FH+RFSA +K Y Y + P R F +
Sbjct: 74 TDPRQIQKMLNALLPHDIVIRDAVMTDEDFHSRFSAIAKEYRYTLSLLPKPLPHHRLFCF 133
Query: 124 HSPYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVE 183
YKLN A M+EAAQY VG H+F++FAN ++ ++ D+ E L+ +
Sbjct: 134 SPRYKLNIARMQEAAQYLVGTHDFASFANLGRE--YSSTIRTLYTLDLSEQEHLVTVICR 191
Query: 184 GSGFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINY 243
G+GFLY+ VRN+ L+ IGK PP+ + +LA++DR+ K APP+GL L + Y
Sbjct: 192 GNGFLYKMVRNIVGALLDIGKGKYPPEHLLDMLATKDRR---KGPPSAPPYGLSLHHVCY 248
Query: 244 NESHLLPPP 252
PPP
Sbjct: 249 ------PPP 251
>D6YIE4_CHLT0 (tr|D6YIE4) tRNA pseudouridine synthase A OS=Chlamydia trachomatis
serovar G (strain G/11222) GN=truA PE=3 SV=1
Length = 267
Score = 159 bits (402), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 96/249 (38%), Positives = 139/249 (55%), Gaps = 16/249 (6%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFN--Y 63
SGWQYQ + ++Q V+E L + + + ++ + RTDAGVHA GQ+AHF P + +
Sbjct: 17 SGWQYQPNALSIQEVLETILKKIAGFR---ISVISSGRTDAGVHAQGQIAHFHCPDHPHF 73
Query: 64 DKLEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAY 123
I LN LLP DI +R+ E+FH+RFSA +K Y Y + P R F +
Sbjct: 74 TDPRQIQKMLNALLPHDIVIRDAVMTDEDFHSRFSAIAKEYRYTLSLLPKPLPHHRLFCF 133
Query: 124 HSPYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVE 183
YKLN A M+EAAQY VG H+F++FAN ++ ++ D+ E L+ +
Sbjct: 134 SPRYKLNIARMQEAAQYLVGTHDFASFANLGRE--YSSTIRTLYTLDLSEQEHLVTVICR 191
Query: 184 GSGFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINY 243
G+GFLY+ VRN+ L+ IGK PP+ + +LA++DR+ K APP+GL L + Y
Sbjct: 192 GNGFLYKMVRNIVGALLDIGKGKYPPEHLLDMLATKDRR---KGPPSAPPYGLSLHHVCY 248
Query: 244 NESHLLPPP 252
PPP
Sbjct: 249 ------PPP 251
>L0U928_CHLTH (tr|L0U928) tRNA pseudouridine synthase A OS=Chlamydia trachomatis
G/SotonG1 GN=truA PE=3 SV=1
Length = 267
Score = 159 bits (402), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 96/249 (38%), Positives = 139/249 (55%), Gaps = 16/249 (6%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFN--Y 63
SGWQYQ + ++Q V+E L + + + ++ + RTDAGVHA GQ+AHF P + +
Sbjct: 17 SGWQYQPNALSIQEVLETILKKIAGFR---ISVISSGRTDAGVHAQGQIAHFHCPDHPHF 73
Query: 64 DKLEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAY 123
I LN LLP DI +R+ E+FH+RFSA +K Y Y + P R F +
Sbjct: 74 TDPRQIQKMLNALLPHDIVIRDAVMTDEDFHSRFSAIAKEYRYTLSLLPKPLPHHRLFCF 133
Query: 124 HSPYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVE 183
YKLN A M+EAAQY VG H+F++FAN ++ ++ D+ E L+ +
Sbjct: 134 SPRYKLNIARMQEAAQYLVGTHDFASFANLGRE--YSSTIRTLYTLDLSEQEHLVTVICR 191
Query: 184 GSGFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINY 243
G+GFLY+ VRN+ L+ IGK PP+ + +LA++DR+ K APP+GL L + Y
Sbjct: 192 GNGFLYKMVRNIVGALLDIGKGKYPPEHLLDMLATKDRR---KGPPSAPPYGLSLHHVCY 248
Query: 244 NESHLLPPP 252
PPP
Sbjct: 249 ------PPP 251
>L0TYV5_CHLTH (tr|L0TYV5) tRNA pseudouridine synthase A OS=Chlamydia trachomatis
D/SotonD6 GN=truA PE=3 SV=1
Length = 267
Score = 159 bits (402), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 96/249 (38%), Positives = 139/249 (55%), Gaps = 16/249 (6%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFN--Y 63
SGWQYQ + ++Q V+E L + + + ++ + RTDAGVHA GQ+AHF P + +
Sbjct: 17 SGWQYQPNALSIQEVLETILKKIAGFR---ISVISSGRTDAGVHAQGQIAHFHCPDHPHF 73
Query: 64 DKLEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAY 123
I LN LLP DI +R+ E+FH+RFSA +K Y Y + P R F +
Sbjct: 74 TDPRQIQKMLNALLPHDIVIRDAVMTDEDFHSRFSAIAKEYRYTLSLLPKPLPHHRLFCF 133
Query: 124 HSPYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVE 183
YKLN A M+EAAQY VG H+F++FAN ++ ++ D+ E L+ +
Sbjct: 134 SPRYKLNIARMQEAAQYLVGTHDFASFANLGRE--YSSTIRTLYTLDLSEQEHLVTVICR 191
Query: 184 GSGFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINY 243
G+GFLY+ VRN+ L+ IGK PP+ + +LA++DR+ K APP+GL L + Y
Sbjct: 192 GNGFLYKMVRNIVGALLDIGKGKYPPEHLLDMLATKDRR---KGPPSAPPYGLSLHHVCY 248
Query: 244 NESHLLPPP 252
PPP
Sbjct: 249 ------PPP 251
>L0TWE2_CHLTH (tr|L0TWE2) tRNA pseudouridine synthase A OS=Chlamydia trachomatis
D/SotonD5 GN=truA PE=3 SV=1
Length = 267
Score = 159 bits (402), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 96/249 (38%), Positives = 139/249 (55%), Gaps = 16/249 (6%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFN--Y 63
SGWQYQ + ++Q V+E L + + + ++ + RTDAGVHA GQ+AHF P + +
Sbjct: 17 SGWQYQPNALSIQEVLETILKKIAGFR---ISVISSGRTDAGVHAQGQIAHFHCPDHPHF 73
Query: 64 DKLEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAY 123
I LN LLP DI +R+ E+FH+RFSA +K Y Y + P R F +
Sbjct: 74 TDPRQIQKMLNALLPHDIVIRDAVMTDEDFHSRFSAIAKEYRYTLSLLPKPLPHHRLFCF 133
Query: 124 HSPYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVE 183
YKLN A M+EAAQY VG H+F++FAN ++ ++ D+ E L+ +
Sbjct: 134 SPRYKLNIARMQEAAQYLVGTHDFASFANLGRE--YSSTIRTLYTLDLSEQEHLVTVICR 191
Query: 184 GSGFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINY 243
G+GFLY+ VRN+ L+ IGK PP+ + +LA++DR+ K APP+GL L + Y
Sbjct: 192 GNGFLYKMVRNIVGALLDIGKGKYPPEHLLDMLATKDRR---KGPPSAPPYGLSLHHVCY 248
Query: 244 NESHLLPPP 252
PPP
Sbjct: 249 ------PPP 251
>L0TQL0_CHLTH (tr|L0TQL0) tRNA pseudouridine synthase A OS=Chlamydia trachomatis
K/SotonK1 GN=truA PE=3 SV=1
Length = 267
Score = 159 bits (402), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 96/249 (38%), Positives = 139/249 (55%), Gaps = 16/249 (6%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFN--Y 63
SGWQYQ + ++Q V+E L + + + ++ + RTDAGVHA GQ+AHF P + +
Sbjct: 17 SGWQYQPNALSIQEVLETILKKIAGFR---ISVISSGRTDAGVHAQGQIAHFHCPDHPHF 73
Query: 64 DKLEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAY 123
I LN LLP DI +R+ E+FH+RFSA +K Y Y + P R F +
Sbjct: 74 TDPRQIQKMLNALLPHDIVIRDAVMTDEDFHSRFSAIAKEYRYTLSLLPKPLPHHRLFCF 133
Query: 124 HSPYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVE 183
YKLN A M+EAAQY VG H+F++FAN ++ ++ D+ E L+ +
Sbjct: 134 SPRYKLNIARMQEAAQYLVGTHDFASFANLGRE--YSSTIRTLYTLDLSEQEHLVTVICR 191
Query: 184 GSGFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINY 243
G+GFLY+ VRN+ L+ IGK PP+ + +LA++DR+ K APP+GL L + Y
Sbjct: 192 GNGFLYKMVRNIVGALLDIGKGKYPPEHLLDMLATKDRR---KGPPSAPPYGLSLHHVCY 248
Query: 244 NESHLLPPP 252
PPP
Sbjct: 249 ------PPP 251
>R5PU58_9CLOT (tr|R5PU58) tRNA pseudouridine synthase A OS=Clostridium sp.
CAG:780 GN=BN780_00968 PE=4 SV=1
Length = 245
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 87/239 (36%), Positives = 139/239 (58%), Gaps = 9/239 (3%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDK 65
+GWQ Q + +Q +ERA+ TK +++ L+G+ RTDAGVHA GQVA+F T
Sbjct: 16 NGWQKQPNKLNIQGEIERAIYNITK---EEVDLIGSGRTDAGVHALGQVANFKTNSQIS- 71
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
+E I A+N L + I ++E V E FH+R++AK K Y Y I N R+ Y
Sbjct: 72 IEKIPLAINSQLKNSIVIKEAEEVDERFHSRYNAKHKTYRYIINNSKCGTAIYRNLEYSY 131
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
P+KL+ M++A++Y+ G+H+F AF ++ + + V+ I++ VK+ G + +E+ G+
Sbjct: 132 PFKLDVEKMKQASKYFEGEHDFKAFKSSGTSS--KNSVRTIYKAIVKQEGEKIIIELTGN 189
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
GFLY VR ++ L+ +G + P+ I I+ S+DR+ K P HGL LV + Y+
Sbjct: 190 GFLYNMVRIISGTLLDVGLGKIRPEEIPEIIESKDRQRAGK---TLPAHGLYLVEVKYD 245
>L8PSZ9_BACIU (tr|L8PSZ9) tRNA pseudouridine synthase A OS=Bacillus subtilis
subsp. inaquosorum KCTC 13429 GN=truA PE=3 SV=1
Length = 247
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 94/239 (39%), Positives = 136/239 (56%), Gaps = 7/239 (2%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDK 65
+G+Q Q TVQ +E+AL K + + + +V + RTD+GVHA GQV HF T +
Sbjct: 15 NGYQVQPGKRTVQDELEKALAVLHKSKDR-IPVVSSGRTDSGVHAAGQVIHFDTSLSI-P 72
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
E ALN LLP DI V++ + FHARFSA K Y Y +Y + D F+RH+AYH
Sbjct: 73 TERWPYALNALLPDDIAVKQAEIADDGFHARFSAVKKEYRYFVYTEKHPDVFKRHYAYHF 132
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
Y LN MREAA++ +G H+F++F V D V+ I+ D E LQ+ + GS
Sbjct: 133 SYHLNVQNMREAAKHLIGTHDFTSFCATKTE--VQDKVRTIYELDWTETDDGLQMRITGS 190
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
GFLY VR +A L+ G + P+ ++ +L ++DR+ + AP HGL L ++ Y+
Sbjct: 191 GFLYNMVRIIAGTLLDAGIGKISPEDVKSMLEAKDREAAGR---TAPGHGLYLWNVYYD 246
>F0T355_CHLP6 (tr|F0T355) tRNA pseudouridine synthase A OS=Chlamydophila psittaci
(strain ATCC VR-125 / 6BC) GN=truA PE=3 SV=1
Length = 268
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/257 (35%), Positives = 146/257 (56%), Gaps = 11/257 (4%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFN--Y 63
+GWQ Q + +VQ V+E +LT K+ K + + + RTDAGVHA+GQVAHF P + +
Sbjct: 16 AGWQRQPNDLSVQEVIENSLT---KVVGKRIHVTSSGRTDAGVHAFGQVAHFPQPDHPRF 72
Query: 64 DKLEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAY 123
+ I LN LLP DI +R++ + FH+RFSA +K Y Y + P++R+F+Y
Sbjct: 73 SQASGIKKMLNALLPKDIVIRDVVLGDDTFHSRFSAIAKEYRYLLTRSPKPLPWERYFSY 132
Query: 124 HSPYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVE 183
+ + L + +M+E A+Y +G H+F++FAN H ++ +F D+ + G + + +
Sbjct: 133 YPRHHLRTDLMQEGAKYLIGTHDFASFAN--HGRDYTSTIRTLFNLDIVDNGETVTIICK 190
Query: 184 GSGFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINY 243
G+GFLY+ VRN+ L+ I + PP+ IQ IL ++R+ K AP + L L + Y
Sbjct: 191 GNGFLYKMVRNIVGSLLDISRGKYPPEYIQEILIQKNRR---KGPPAAPSYALSLYHVCY 247
Query: 244 NES-HLLPPPGCPANSF 259
+ H P C NS
Sbjct: 248 PKPYHWFCTPECNINSL 264
>E5AH27_CHLP1 (tr|E5AH27) tRNA pseudouridine synthase A OS=Chlamydophila psittaci
(strain RD1) GN=truA PE=3 SV=1
Length = 268
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/257 (35%), Positives = 146/257 (56%), Gaps = 11/257 (4%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFN--Y 63
+GWQ Q + +VQ V+E +LT K+ K + + + RTDAGVHA+GQVAHF P + +
Sbjct: 16 AGWQRQPNDLSVQEVIENSLT---KVVGKRIHVTSSGRTDAGVHAFGQVAHFPQPDHPRF 72
Query: 64 DKLEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAY 123
+ I LN LLP DI +R++ + FH+RFSA +K Y Y + P++R+F+Y
Sbjct: 73 SQASGIKKMLNALLPKDIVIRDVVLGDDTFHSRFSAIAKEYRYLLTRSPKPLPWERYFSY 132
Query: 124 HSPYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVE 183
+ + L + +M+E A+Y +G H+F++FAN H ++ +F D+ + G + + +
Sbjct: 133 YPRHHLRTDLMQEGAKYLIGTHDFASFAN--HGRDYTSTIRTLFNLDIVDNGETVTIICK 190
Query: 184 GSGFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINY 243
G+GFLY+ VRN+ L+ I + PP+ IQ IL ++R+ K AP + L L + Y
Sbjct: 191 GNGFLYKMVRNIVGSLLDISRGKYPPEYIQEILIQKNRR---KGPPAAPSYALSLYHVCY 247
Query: 244 NES-HLLPPPGCPANSF 259
+ H P C NS
Sbjct: 248 PKPYHWFCTPECNINSL 264
>M1J2D8_CHLPS (tr|M1J2D8) tRNA pseudouridine synthase A OS=Chlamydophila psittaci
Mat116 GN=truA PE=3 SV=1
Length = 268
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/257 (35%), Positives = 146/257 (56%), Gaps = 11/257 (4%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFN--Y 63
+GWQ Q + +VQ V+E +LT K+ K + + + RTDAGVHA+GQVAHF P + +
Sbjct: 16 AGWQRQPNDLSVQEVIENSLT---KVVGKRIHVTSSGRTDAGVHAFGQVAHFPQPDHPRF 72
Query: 64 DKLEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAY 123
+ I LN LLP DI +R++ + FH+RFSA +K Y Y + P++R+F+Y
Sbjct: 73 SQASGIKKMLNALLPKDIVIRDVVLGDDTFHSRFSAIAKEYRYLLTRSPKPLPWERYFSY 132
Query: 124 HSPYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVE 183
+ + L + +M+E A+Y +G H+F++FAN H ++ +F D+ + G + + +
Sbjct: 133 YPRHHLRTDLMQEGAKYLIGTHDFASFAN--HGRDYTSTIRTLFNLDIVDNGETVTIICK 190
Query: 184 GSGFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINY 243
G+GFLY+ VRN+ L+ I + PP+ IQ IL ++R+ K AP + L L + Y
Sbjct: 191 GNGFLYKMVRNIVGSLLDISRGKYPPEYIQEILIQKNRR---KGPPAAPSYALSLYHVCY 247
Query: 244 NES-HLLPPPGCPANSF 259
+ H P C NS
Sbjct: 248 PKPYHWFCTPECNINSL 264
>K4UMB4_CHLPS (tr|K4UMB4) tRNA pseudouridine synthase A OS=Chlamydia psittaci
01DC12 GN=truA PE=3 SV=1
Length = 268
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/257 (35%), Positives = 146/257 (56%), Gaps = 11/257 (4%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFN--Y 63
+GWQ Q + +VQ V+E +LT K+ K + + + RTDAGVHA+GQVAHF P + +
Sbjct: 16 AGWQRQPNDLSVQEVIENSLT---KVVGKRIHVTSSGRTDAGVHAFGQVAHFPQPDHPRF 72
Query: 64 DKLEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAY 123
+ I LN LLP DI +R++ + FH+RFSA +K Y Y + P++R+F+Y
Sbjct: 73 SQASGIKKMLNALLPKDIVIRDVVLGDDTFHSRFSAIAKEYRYLLTRSPKPLPWERYFSY 132
Query: 124 HSPYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVE 183
+ + L + +M+E A+Y +G H+F++FAN H ++ +F D+ + G + + +
Sbjct: 133 YPRHHLRTDLMQEGAKYLIGTHDFASFAN--HGRDYTSTIRTLFNLDIVDNGETVTIICK 190
Query: 184 GSGFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINY 243
G+GFLY+ VRN+ L+ I + PP+ IQ IL ++R+ K AP + L L + Y
Sbjct: 191 GNGFLYKMVRNIVGSLLDISRGKYPPEYIQEILIQKNRR---KGPPAAPSYALSLYHVCY 247
Query: 244 NES-HLLPPPGCPANSF 259
+ H P C NS
Sbjct: 248 PKPYHWFCTPECNINSL 264
>J9XI36_CHLPS (tr|J9XI36) tRNA pseudouridine synthase A OS=Chlamydia psittaci CP3
GN=truA PE=3 SV=1
Length = 268
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/257 (35%), Positives = 146/257 (56%), Gaps = 11/257 (4%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFN--Y 63
+GWQ Q + +VQ V+E +LT K+ K + + + RTDAGVHA+GQVAHF P + +
Sbjct: 16 AGWQRQPNDLSVQEVIENSLT---KVVGKRIHVTSSGRTDAGVHAFGQVAHFPQPDHPRF 72
Query: 64 DKLEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAY 123
+ I LN LLP DI +R++ + FH+RFSA +K Y Y + P++R+F+Y
Sbjct: 73 SQASGIKKMLNALLPKDIVIRDVVLGDDTFHSRFSAIAKEYRYLLTRSPKPLPWERYFSY 132
Query: 124 HSPYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVE 183
+ + L + +M+E A+Y +G H+F++FAN H ++ +F D+ + G + + +
Sbjct: 133 YPRHHLRTDLMQEGAKYLIGTHDFASFAN--HGRDYTSTIRTLFNLDIVDNGETVTIICK 190
Query: 184 GSGFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINY 243
G+GFLY+ VRN+ L+ I + PP+ IQ IL ++R+ K AP + L L + Y
Sbjct: 191 GNGFLYKMVRNIVGSLLDISRGKYPPEYIQEILIQKNRR---KGPPAAPSYALSLYHVCY 247
Query: 244 NES-HLLPPPGCPANSF 259
+ H P C NS
Sbjct: 248 PKPYHWFCTPECNINSL 264
>J9X8F6_CHLPS (tr|J9X8F6) tRNA pseudouridine synthase A OS=Chlamydia psittaci WC
GN=truA PE=3 SV=1
Length = 268
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/257 (35%), Positives = 146/257 (56%), Gaps = 11/257 (4%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFN--Y 63
+GWQ Q + +VQ V+E +LT K+ K + + + RTDAGVHA+GQVAHF P + +
Sbjct: 16 AGWQRQPNDLSVQEVIENSLT---KVVGKRIHVTSSGRTDAGVHAFGQVAHFPQPDHPRF 72
Query: 64 DKLEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAY 123
+ I LN LLP DI +R++ + FH+RFSA +K Y Y + P++R+F+Y
Sbjct: 73 SQASGIKKMLNALLPKDIVIRDVVLGDDTFHSRFSAIAKEYRYLLTRSPKPLPWERYFSY 132
Query: 124 HSPYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVE 183
+ + L + +M+E A+Y +G H+F++FAN H ++ +F D+ + G + + +
Sbjct: 133 YPRHHLRTDLMQEGAKYLIGTHDFASFAN--HGRDYTSTIRTLFNLDIVDNGETVTIICK 190
Query: 184 GSGFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINY 243
G+GFLY+ VRN+ L+ I + PP+ IQ IL ++R+ K AP + L L + Y
Sbjct: 191 GNGFLYKMVRNIVGSLLDISRGKYPPEYIQEILIQKNRR---KGPPAAPSYALSLYHVCY 247
Query: 244 NES-HLLPPPGCPANSF 259
+ H P C NS
Sbjct: 248 PKPYHWFCTPECNINSL 264
>J9X3U0_CHLPS (tr|J9X3U0) tRNA pseudouridine synthase A OS=Chlamydia psittaci
VS225 GN=truA PE=3 SV=1
Length = 268
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/257 (35%), Positives = 146/257 (56%), Gaps = 11/257 (4%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFN--Y 63
+GWQ Q + +VQ V+E +LT K+ K + + + RTDAGVHA+GQVAHF P + +
Sbjct: 16 AGWQRQPNDLSVQEVIENSLT---KVVGKRIHVTSSGRTDAGVHAFGQVAHFPQPDHPRF 72
Query: 64 DKLEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAY 123
+ I LN LLP DI +R++ + FH+RFSA +K Y Y + P++R+F+Y
Sbjct: 73 SQASGIKKMLNALLPKDIVIRDVVLGDDTFHSRFSAIAKEYRYLLTRSPKPLPWERYFSY 132
Query: 124 HSPYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVE 183
+ + L + +M+E A+Y +G H+F++FAN H ++ +F D+ + G + + +
Sbjct: 133 YPRHHLRTDLMQEGAKYLIGTHDFASFAN--HGRDYTSTIRTLFNLDIVDNGETVTIICK 190
Query: 184 GSGFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINY 243
G+GFLY+ VRN+ L+ I + PP+ IQ IL ++R+ K AP + L L + Y
Sbjct: 191 GNGFLYKMVRNIVGSLLDISRGKYPPEYIQEILIQKNRR---KGPPAAPSYALSLYHVCY 247
Query: 244 NES-HLLPPPGCPANSF 259
+ H P C NS
Sbjct: 248 PKPYHWFCTPECNINSL 264
>J9WXW8_CHLPS (tr|J9WXW8) tRNA pseudouridine synthase A OS=Chlamydia psittaci GR9
GN=truA PE=3 SV=1
Length = 268
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/257 (35%), Positives = 146/257 (56%), Gaps = 11/257 (4%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFN--Y 63
+GWQ Q + +VQ V+E +LT K+ K + + + RTDAGVHA+GQVAHF P + +
Sbjct: 16 AGWQRQPNDLSVQEVIENSLT---KVVGKRIHVTSSGRTDAGVHAFGQVAHFPQPDHPRF 72
Query: 64 DKLEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAY 123
+ I LN LLP DI +R++ + FH+RFSA +K Y Y + P++R+F+Y
Sbjct: 73 SQASGIKKMLNALLPKDIVIRDVVLGDDTFHSRFSAIAKEYRYLLTRSPKPLPWERYFSY 132
Query: 124 HSPYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVE 183
+ + L + +M+E A+Y +G H+F++FAN H ++ +F D+ + G + + +
Sbjct: 133 YPRHHLRTDLMQEGAKYLIGTHDFASFAN--HGRDYTSTIRTLFNLDIVDNGETVTIICK 190
Query: 184 GSGFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINY 243
G+GFLY+ VRN+ L+ I + PP+ IQ IL ++R+ K AP + L L + Y
Sbjct: 191 GNGFLYKMVRNIVGSLLDISRGKYPPEYIQEILIQKNRR---KGPPAAPSYALSLYHVCY 247
Query: 244 NES-HLLPPPGCPANSF 259
+ H P C NS
Sbjct: 248 PKPYHWFCTPECNINSL 264
>J9WW65_CHLPS (tr|J9WW65) tRNA pseudouridine synthase A OS=Chlamydia psittaci MN
GN=truA PE=3 SV=1
Length = 268
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/257 (35%), Positives = 146/257 (56%), Gaps = 11/257 (4%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFN--Y 63
+GWQ Q + +VQ V+E +LT K+ K + + + RTDAGVHA+GQVAHF P + +
Sbjct: 16 AGWQRQPNDLSVQEVIENSLT---KVVGKRIHVTSSGRTDAGVHAFGQVAHFPQPDHPRF 72
Query: 64 DKLEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAY 123
+ I LN LLP DI +R++ + FH+RFSA +K Y Y + P++R+F+Y
Sbjct: 73 SQASGIKKMLNALLPKDIVIRDVVLGDDTFHSRFSAIAKEYRYLLTRSPKPLPWERYFSY 132
Query: 124 HSPYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVE 183
+ + L + +M+E A+Y +G H+F++FAN H ++ +F D+ + G + + +
Sbjct: 133 YPRHHLRTDLMQEGAKYLIGTHDFASFAN--HGRDYTSTIRTLFNLDIVDNGETVTIICK 190
Query: 184 GSGFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINY 243
G+GFLY+ VRN+ L+ I + PP+ IQ IL ++R+ K AP + L L + Y
Sbjct: 191 GNGFLYKMVRNIVGSLLDISRGKYPPEYIQEILIQKNRR---KGPPAAPSYALSLYHVCY 247
Query: 244 NES-HLLPPPGCPANSF 259
+ H P C NS
Sbjct: 248 PKPYHWFCTPECNINSL 264
>J9WUR6_CHLPS (tr|J9WUR6) tRNA pseudouridine synthase A OS=Chlamydia psittaci
84/55 GN=truA PE=3 SV=1
Length = 268
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/257 (35%), Positives = 146/257 (56%), Gaps = 11/257 (4%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFN--Y 63
+GWQ Q + +VQ V+E +LT K+ K + + + RTDAGVHA+GQVAHF P + +
Sbjct: 16 AGWQRQPNDLSVQEVIENSLT---KVVGKRIHVTSSGRTDAGVHAFGQVAHFPQPDHPRF 72
Query: 64 DKLEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAY 123
+ I LN LLP DI +R++ + FH+RFSA +K Y Y + P++R+F+Y
Sbjct: 73 SQASGIKKMLNALLPKDIVIRDVVLGDDTFHSRFSAIAKEYRYLLTRSPKPLPWERYFSY 132
Query: 124 HSPYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVE 183
+ + L + +M+E A+Y +G H+F++FAN H ++ +F D+ + G + + +
Sbjct: 133 YPRHHLRTDLMQEGAKYLIGTHDFASFAN--HGRDYTSTIRTLFNLDIVDNGETVTIICK 190
Query: 184 GSGFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINY 243
G+GFLY+ VRN+ L+ I + PP+ IQ IL ++R+ K AP + L L + Y
Sbjct: 191 GNGFLYKMVRNIVGSLLDISRGKYPPEYIQEILIQKNRR---KGPPAAPSYALSLYHVCY 247
Query: 244 NES-HLLPPPGCPANSF 259
+ H P C NS
Sbjct: 248 PKPYHWFCTPECNINSL 264
>F6FF75_CHLPS (tr|F6FF75) tRNA pseudouridine synthase A OS=Chlamydophila psittaci
08DC60 GN=truA PE=3 SV=1
Length = 268
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/257 (35%), Positives = 146/257 (56%), Gaps = 11/257 (4%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFN--Y 63
+GWQ Q + +VQ V+E +LT K+ K + + + RTDAGVHA+GQVAHF P + +
Sbjct: 16 AGWQRQPNDLSVQEVIENSLT---KVVGKRIHVTSSGRTDAGVHAFGQVAHFPQPDHPRF 72
Query: 64 DKLEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAY 123
+ I LN LLP DI +R++ + FH+RFSA +K Y Y + P++R+F+Y
Sbjct: 73 SQASGIKKMLNALLPKDIVIRDVVLGDDTFHSRFSAIAKEYRYLLTRSPKPLPWERYFSY 132
Query: 124 HSPYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVE 183
+ + L + +M+E A+Y +G H+F++FAN H ++ +F D+ + G + + +
Sbjct: 133 YPRHHLRTDLMQEGAKYLIGTHDFASFAN--HGRDYTSTIRTLFNLDIVDNGETVTIICK 190
Query: 184 GSGFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINY 243
G+GFLY+ VRN+ L+ I + PP+ IQ IL ++R+ K AP + L L + Y
Sbjct: 191 GNGFLYKMVRNIVGSLLDISRGKYPPEYIQEILIQKNRR---KGPPAAPSYALSLYHVCY 247
Query: 244 NES-HLLPPPGCPANSF 259
+ H P C NS
Sbjct: 248 PKPYHWFCTPECNINSL 264
>F6F9X9_CHLPS (tr|F6F9X9) tRNA pseudouridine synthase A OS=Chlamydophila psittaci
02DC15 GN=truA PE=3 SV=1
Length = 268
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/257 (35%), Positives = 146/257 (56%), Gaps = 11/257 (4%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFN--Y 63
+GWQ Q + +VQ V+E +LT K+ K + + + RTDAGVHA+GQVAHF P + +
Sbjct: 16 AGWQRQPNDLSVQEVIENSLT---KVVGKRIHVTSSGRTDAGVHAFGQVAHFPQPDHPRF 72
Query: 64 DKLEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAY 123
+ I LN LLP DI +R++ + FH+RFSA +K Y Y + P++R+F+Y
Sbjct: 73 SQASGIKKMLNALLPKDIVIRDVVLGDDTFHSRFSAIAKEYRYLLTRSPKPLPWERYFSY 132
Query: 124 HSPYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVE 183
+ + L + +M+E A+Y +G H+F++FAN H ++ +F D+ + G + + +
Sbjct: 133 YPRHHLRTDLMQEGAKYLIGTHDFASFAN--HGRDYTSTIRTLFNLDIVDNGETVTIICK 190
Query: 184 GSGFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINY 243
G+GFLY+ VRN+ L+ I + PP+ IQ IL ++R+ K AP + L L + Y
Sbjct: 191 GNGFLYKMVRNIVGSLLDISRGKYPPEYIQEILIQKNRR---KGPPAAPSYALSLYHVCY 247
Query: 244 NES-HLLPPPGCPANSF 259
+ H P C NS
Sbjct: 248 PKPYHWFCTPECNINSL 264
>F6F7G3_CHLPS (tr|F6F7G3) tRNA pseudouridine synthase A OS=Chlamydophila psittaci
01DC11 GN=truA PE=3 SV=1
Length = 268
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/257 (35%), Positives = 146/257 (56%), Gaps = 11/257 (4%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFN--Y 63
+GWQ Q + +VQ V+E +LT K+ K + + + RTDAGVHA+GQVAHF P + +
Sbjct: 16 AGWQRQPNDLSVQEVIENSLT---KVVGKRIHVTSSGRTDAGVHAFGQVAHFPQPDHPRF 72
Query: 64 DKLEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAY 123
+ I LN LLP DI +R++ + FH+RFSA +K Y Y + P++R+F+Y
Sbjct: 73 SQASGIKKMLNALLPKDIVIRDVVLGDDTFHSRFSAIAKEYRYLLTRSPKPLPWERYFSY 132
Query: 124 HSPYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVE 183
+ + L + +M+E A+Y +G H+F++FAN H ++ +F D+ + G + + +
Sbjct: 133 YPRHHLRTDLMQEGAKYLIGTHDFASFAN--HGRDYTSTIRTLFNLDIVDNGETVTIICK 190
Query: 184 GSGFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINY 243
G+GFLY+ VRN+ L+ I + PP+ IQ IL ++R+ K AP + L L + Y
Sbjct: 191 GNGFLYKMVRNIVGSLLDISRGKYPPEYIQEILIQKNRR---KGPPAAPSYALSLYHVCY 247
Query: 244 NES-HLLPPPGCPANSF 259
+ H P C NS
Sbjct: 248 PKPYHWFCTPECNINSL 264
>F6F4S8_CHLPS (tr|F6F4S8) tRNA pseudouridine synthase A OS=Chlamydophila psittaci
C19/98 GN=truA PE=3 SV=1
Length = 268
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/257 (35%), Positives = 146/257 (56%), Gaps = 11/257 (4%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFN--Y 63
+GWQ Q + +VQ V+E +LT K+ K + + + RTDAGVHA+GQVAHF P + +
Sbjct: 16 AGWQRQPNDLSVQEVIENSLT---KVVGKRIHVTSSGRTDAGVHAFGQVAHFPQPDHPRF 72
Query: 64 DKLEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAY 123
+ I LN LLP DI +R++ + FH+RFSA +K Y Y + P++R+F+Y
Sbjct: 73 SQASGIKKMLNALLPKDIVIRDVVLGDDTFHSRFSAIAKEYRYLLTRSPKPLPWERYFSY 132
Query: 124 HSPYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVE 183
+ + L + +M+E A+Y +G H+F++FAN H ++ +F D+ + G + + +
Sbjct: 133 YPRHHLRTDLMQEGAKYLIGTHDFASFAN--HGRDYTSTIRTLFNLDIVDNGETVTIICK 190
Query: 184 GSGFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINY 243
G+GFLY+ VRN+ L+ I + PP+ IQ IL ++R+ K AP + L L + Y
Sbjct: 191 GNGFLYKMVRNIVGSLLDISRGKYPPEYIQEILIQKNRR---KGPPAAPSYALSLYHVCY 247
Query: 244 NES-HLLPPPGCPANSF 259
+ H P C NS
Sbjct: 248 PKPYHWFCTPECNINSL 264
>F3NUK1_CHLPS (tr|F3NUK1) tRNA pseudouridine synthase A OS=Chlamydophila psittaci
Cal10 GN=truA PE=3 SV=1
Length = 268
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/257 (35%), Positives = 146/257 (56%), Gaps = 11/257 (4%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFN--Y 63
+GWQ Q + +VQ V+E +LT K+ K + + + RTDAGVHA+GQVAHF P + +
Sbjct: 16 AGWQRQPNDLSVQEVIENSLT---KVVGKRIHVTSSGRTDAGVHAFGQVAHFPQPDHPRF 72
Query: 64 DKLEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAY 123
+ I LN LLP DI +R++ + FH+RFSA +K Y Y + P++R+F+Y
Sbjct: 73 SQASGIKKMLNALLPKDIVIRDVVLGDDTFHSRFSAIAKEYRYLLTRSPKPLPWERYFSY 132
Query: 124 HSPYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVE 183
+ + L + +M+E A+Y +G H+F++FAN H ++ +F D+ + G + + +
Sbjct: 133 YPRHHLRTDLMQEGAKYLIGTHDFASFAN--HGRDYTSTIRTLFNLDIVDNGETVTIICK 190
Query: 184 GSGFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINY 243
G+GFLY+ VRN+ L+ I + PP+ IQ IL ++R+ K AP + L L + Y
Sbjct: 191 GNGFLYKMVRNIVGSLLDISRGKYPPEYIQEILIQKNRR---KGPPAAPSYALSLYHVCY 247
Query: 244 NES-HLLPPPGCPANSF 259
+ H P C NS
Sbjct: 248 PKPYHWFCTPECNINSL 264
>E1NVY4_9LACO (tr|E1NVY4) tRNA pseudouridine synthase A OS=Lactobacillus iners
SPIN 2503V10-D GN=truA PE=3 SV=1
Length = 260
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 90/239 (37%), Positives = 140/239 (58%), Gaps = 7/239 (2%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDKL 66
G+Q Q + T+Q V+E AL + TK K + + G+ RTDAGVHA GQV HF P N
Sbjct: 17 GFQKQPNQRTIQGVIEDALLKMTK--GKHVIVHGSGRTDAGVHAKGQVIHFDYPGNVIPA 74
Query: 67 EDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHSP 126
+++ ALN L+P DI + V ++FH ++S K+K Y Y I DPF+R++ H P
Sbjct: 75 KNMLLALNALMPRDIIFLDSELVNDDFHVQYSTKAKWYRYIINQSRFTDPFRRNYTGHCP 134
Query: 127 YKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGSG 186
YKL+ M++AA Y +GKH+F++FA + + D V+ IF ++++ G + L+V G G
Sbjct: 135 YKLDMLKMKKAATYLLGKHDFTSFAASGGQ--IVDKVRTIFYINLEQNGDEIVLDVIGDG 192
Query: 187 FLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYNE 245
FLY VR + LL+ IG + ++ I+ ++DR++ AP GL L + Y++
Sbjct: 193 FLYNMVRIITGLLIDIGHGQKDVEDVEKIILAKDRQQARNT---APASGLYLYHVFYDD 248
>I2HY00_9BACI (tr|I2HY00) tRNA pseudouridine synthase A OS=Bacillus sp. 5B6
GN=truA PE=3 SV=1
Length = 247
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 93/239 (38%), Positives = 135/239 (56%), Gaps = 7/239 (2%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDK 65
+G+Q Q TVQ +E+AL K + + + + RTD+ VHA GQV HF T +
Sbjct: 15 NGYQVQPGKRTVQSELEKALAVIHKTDGR-VPVYSSGRTDSDVHAAGQVIHFDTSLSI-P 72
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
E ALN LLP DI V+ + FHARFSA K Y Y +Y + D F+R++AYH
Sbjct: 73 AEKWPFALNALLPDDIAVKTAEIADDGFHARFSAVQKEYRYIVYTEKHPDVFKRYYAYHF 132
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
Y+LN MREA+++ +G H+F++F A + V D V+ I+ D E G LQ+ + G+
Sbjct: 133 AYQLNVQKMREASRHLIGTHDFTSFCAA--DTAVQDKVRTIYELDWTETGDGLQMRITGN 190
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
GFLY VR +A L+ G PD ++ +L ++DR+ + AP HGL L S+ Y+
Sbjct: 191 GFLYNMVRIIAGTLLDTGAGKFSPDDVKAMLEAKDREAAGRT---APGHGLYLWSVCYD 246
>R5TN58_9FIRM (tr|R5TN58) tRNA pseudouridine synthase A 1 OS=Ruminococcus gnavus
CAG:126 GN=BN481_02318 PE=4 SV=1
Length = 246
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 93/239 (38%), Positives = 135/239 (56%), Gaps = 9/239 (3%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDKL 66
GWQ Q + TV+ V+ RAL KL +++ ++GASRTD+GVHA G VA F + +
Sbjct: 17 GWQIQPNGITVEEVLNRALR---KLTGEEITVIGASRTDSGVHALGNVAVFDSETSIPP- 72
Query: 67 EDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHSP 126
E I ALN LP DI V VP ++H R+ K Y Y I N I DP +R +
Sbjct: 73 ERISYALNQRLPDDIVVIRSEEVPGDWHPRYCNSKKTYEYHILNAKIPDPTRRLTRHFVS 132
Query: 127 YKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGSG 186
+ L+ M++AAQY VG H+F +F N + V D V+ I+ D+ +G + + ++G+G
Sbjct: 133 FDLDIEKMKKAAQYLVGTHDFVSFCNVRTD--VEDTVRTIYSLDILPVGDEITIRIQGNG 190
Query: 187 FLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYNE 245
FLY VR + LV++G+ P+ +Q IL +++RK + APP GL LV I Y E
Sbjct: 191 FLYNMVRIIVGTLVRVGRGFYTPEQVQEILEAKNRK---AAGVTAPPQGLFLVGIEYEE 246
>J9XAM5_CHLPS (tr|J9XAM5) tRNA pseudouridine synthase A OS=Chlamydia psittaci
WS/RT/E30 GN=truA PE=3 SV=1
Length = 268
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/257 (35%), Positives = 146/257 (56%), Gaps = 11/257 (4%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFN--Y 63
+GWQ Q + +VQ V+E +LT K+ K + + + RTDAGVHA+GQVAHF P + +
Sbjct: 16 AGWQRQPNDLSVQEVIENSLT---KVVGKRIHVTSSGRTDAGVHAFGQVAHFPQPDHPRF 72
Query: 64 DKLEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAY 123
+ I LN LLP DI +R++ + FH+RFSA +K Y Y + P++R+F+Y
Sbjct: 73 SQASGIKKMLNALLPKDIVIRDVVLGDDTFHSRFSAIAKEYRYLLKRSPKPLPWERYFSY 132
Query: 124 HSPYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVE 183
+ + L + +M+E A+Y +G H+F++FAN H ++ +F D+ + G + + +
Sbjct: 133 YPRHHLRTDLMQEGAKYLIGTHDFASFAN--HGRDYTSTIRTLFNLDIVDNGETVTIICK 190
Query: 184 GSGFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINY 243
G+GFLY+ VRN+ L+ I + PP+ IQ IL ++R+ K AP + L L + Y
Sbjct: 191 GNGFLYKMVRNIVGSLLDISRGKYPPEYIQEILIQKNRR---KGPPAAPSYALSLYHVCY 247
Query: 244 NES-HLLPPPGCPANSF 259
+ H P C NS
Sbjct: 248 PKPYHWFCTPECNINSL 264
>B7HJI9_BACC4 (tr|B7HJI9) tRNA pseudouridine synthase A OS=Bacillus cereus
(strain B4264) GN=truA1 PE=3 SV=1
Length = 252
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/239 (38%), Positives = 138/239 (57%), Gaps = 10/239 (4%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGAS-RTDAGVHAWGQVAHFVTPFNYDK 65
G+Q Q + TVQ +E+AL KL + +L V AS RTD+ VHA GQV HF TP + ++
Sbjct: 22 GYQIQPNHRTVQQEIEKALQ---KLHKGELVRVQASGRTDSTVHAKGQVIHFDTPLSLEE 78
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
+ I+A LN +LP DI +R++ EEFHAR+ + K Y Y++ D F+R++ Y
Sbjct: 79 WQWINA-LNTMLPDDIVIRQVEKKTEEFHARYGVEKKEYRYRVLLSKTADVFRRNYVYQY 137
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
PY L +R+A Y++G H+F++F +A + D V+ I+ ++ E + G+
Sbjct: 138 PYPLEINSIRKAIPYFIGTHDFTSFCSAKTDK--KDKVRTIYEIELIEQNDEIIFRFVGN 195
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
GFLY VR + L+ +G+ L PD I ILA ++R+ K AP HGL L +NYN
Sbjct: 196 GFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGK---MAPGHGLYLWEVNYN 251
>M4L2U9_BACTK (tr|M4L2U9) TruA OS=Bacillus thuringiensis serovar kurstaki str.
HD73 GN=HD73_0142 PE=4 SV=1
Length = 252
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/239 (38%), Positives = 138/239 (57%), Gaps = 10/239 (4%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGAS-RTDAGVHAWGQVAHFVTPFNYDK 65
G+Q Q + TVQ +E+AL KL + +L V AS RTD+ VHA GQV HF TP + ++
Sbjct: 22 GYQIQPNHRTVQQEIEKALQ---KLHKGELVRVQASGRTDSTVHAKGQVIHFDTPLSLEE 78
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
+ I+A LN +LP DI +R++ EEFHAR+ + K Y Y++ D F+R++ Y
Sbjct: 79 WQWINA-LNTMLPDDIVIRQVEKKTEEFHARYGVEKKEYRYRVLLSKTADVFRRNYVYQY 137
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
PY L +R+A Y++G H+F++F +A + D V+ I+ ++ E + G+
Sbjct: 138 PYPLEINSIRKAIPYFIGTHDFTSFCSAKTDK--KDKVRTIYEIELIEQNDEIIFRFVGN 195
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
GFLY VR + L+ +G+ L PD I ILA ++R+ K AP HGL L +NYN
Sbjct: 196 GFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGK---MAPGHGLYLWEVNYN 251
>C3EEY0_BACTK (tr|C3EEY0) tRNA pseudouridine synthase A OS=Bacillus thuringiensis
serovar kurstaki str. T03a001 GN=truA PE=3 SV=1
Length = 252
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/239 (38%), Positives = 138/239 (57%), Gaps = 10/239 (4%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGAS-RTDAGVHAWGQVAHFVTPFNYDK 65
G+Q Q + TVQ +E+AL KL + +L V AS RTD+ VHA GQV HF TP + ++
Sbjct: 22 GYQIQPNHRTVQQEIEKALQ---KLHKGELVRVQASGRTDSTVHAKGQVIHFDTPLSLEE 78
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
+ I+A LN +LP DI +R++ EEFHAR+ + K Y Y++ D F+R++ Y
Sbjct: 79 WQWINA-LNTMLPDDIVIRQVEKKTEEFHARYGVEKKEYRYRVLLSKTADVFRRNYVYQY 137
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
PY L +R+A Y++G H+F++F +A + D V+ I+ ++ E + G+
Sbjct: 138 PYPLEINSIRKAIPYFIGTHDFTSFCSAKTDK--KDKVRTIYEIELIEQNDEIIFRFVGN 195
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
GFLY VR + L+ +G+ L PD I ILA ++R+ K AP HGL L +NYN
Sbjct: 196 GFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGK---MAPGHGLYLWEVNYN 251
>C2WGK5_BACCE (tr|C2WGK5) tRNA pseudouridine synthase A OS=Bacillus cereus
Rock4-2 GN=truA PE=3 SV=1
Length = 252
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/239 (38%), Positives = 138/239 (57%), Gaps = 10/239 (4%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGAS-RTDAGVHAWGQVAHFVTPFNYDK 65
G+Q Q + TVQ +E+AL KL + +L V AS RTD+ VHA GQV HF TP + ++
Sbjct: 22 GYQIQPNHRTVQQEIEKALQ---KLHKGELVRVQASGRTDSTVHAKGQVIHFDTPLSLEE 78
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
+ I+A LN +LP DI +R++ EEFHAR+ + K Y Y++ D F+R++ Y
Sbjct: 79 WQWINA-LNTMLPDDIVIRQVEKKTEEFHARYGVEKKEYRYRVLLSKTADVFRRNYVYQY 137
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
PY L +R+A Y++G H+F++F +A + D V+ I+ ++ E + G+
Sbjct: 138 PYPLEINSIRKAIPYFIGTHDFTSFCSAKTDK--KDKVRTIYEIELIEQNDEIIFRFVGN 195
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
GFLY VR + L+ +G+ L PD I ILA ++R+ K AP HGL L +NYN
Sbjct: 196 GFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGK---MAPGHGLYLWEVNYN 251
>C2R2A6_BACCE (tr|C2R2A6) tRNA pseudouridine synthase A OS=Bacillus cereus m1550
GN=truA PE=3 SV=1
Length = 252
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/239 (38%), Positives = 138/239 (57%), Gaps = 10/239 (4%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGAS-RTDAGVHAWGQVAHFVTPFNYDK 65
G+Q Q + TVQ +E+AL KL + +L V AS RTD+ VHA GQV HF TP + ++
Sbjct: 22 GYQIQPNHRTVQQEIEKALQ---KLHKGELVRVQASGRTDSTVHAKGQVIHFDTPLSLEE 78
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
+ I+A LN +LP DI +R++ EEFHAR+ + K Y Y++ D F+R++ Y
Sbjct: 79 WQWINA-LNTMLPDDIVIRQVEKKTEEFHARYGVEKKEYRYRVLLSKTADVFRRNYVYQY 137
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
PY L +R+A Y++G H+F++F +A + D V+ I+ ++ E + G+
Sbjct: 138 PYPLEINSIRKAIPYFIGTHDFTSFCSAKTDK--KDKVRTIYEIELIEQNDEIIFRFVGN 195
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
GFLY VR + L+ +G+ L PD I ILA ++R+ K AP HGL L +NYN
Sbjct: 196 GFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGK---MAPGHGLYLWEVNYN 251
>C2NT19_BACCE (tr|C2NT19) tRNA pseudouridine synthase A OS=Bacillus cereus
172560W GN=truA PE=3 SV=1
Length = 252
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/239 (38%), Positives = 138/239 (57%), Gaps = 10/239 (4%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGAS-RTDAGVHAWGQVAHFVTPFNYDK 65
G+Q Q + TVQ +E+AL KL + +L V AS RTD+ VHA GQV HF TP + ++
Sbjct: 22 GYQIQPNHRTVQQEIEKALQ---KLHKGELVRVQASGRTDSTVHAKGQVIHFDTPLSLEE 78
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
+ I+A LN +LP DI +R++ EEFHAR+ + K Y Y++ D F+R++ Y
Sbjct: 79 WQWINA-LNTMLPDDIVIRQVEKKTEEFHARYGVEKKEYRYRVLLSKTADVFRRNYVYQY 137
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
PY L +R+A Y++G H+F++F +A + D V+ I+ ++ E + G+
Sbjct: 138 PYPLEINSIRKAIPYFIGTHDFTSFCSAKTDK--KDKVRTIYEIELIEQNDEIIFRFVGN 195
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
GFLY VR + L+ +G+ L PD I ILA ++R+ K AP HGL L +NYN
Sbjct: 196 GFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGK---MAPGHGLYLWEVNYN 251
>R8UNN3_BACCE (tr|R8UNN3) tRNA pseudouridine synthase A 1 OS=Bacillus cereus
VD184 GN=IKC_05911 PE=4 SV=1
Length = 247
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/239 (38%), Positives = 138/239 (57%), Gaps = 10/239 (4%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGAS-RTDAGVHAWGQVAHFVTPFNYDK 65
G+Q Q + TVQ +E+AL KL + +L V AS RTD+ VHA GQV HF TP + ++
Sbjct: 17 GYQIQPNHRTVQQEIEKALQ---KLHKGELVRVQASGRTDSTVHAKGQVIHFDTPLSLEE 73
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
+ I+A LN +LP DI +R++ EEFHAR+ + K Y Y++ D F+R++ Y
Sbjct: 74 WQWINA-LNTMLPDDIVIRQVEKKTEEFHARYGVEKKEYRYRVLLSKTADVFRRNYVYQY 132
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
PY L +R+A Y++G H+F++F +A + D V+ I+ ++ E + G+
Sbjct: 133 PYPLEINSIRKAIPYFIGTHDFTSFCSAKTDK--KDKVRTIYEIELIEQNDEIIFRFVGN 190
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
GFLY VR + L+ +G+ L PD I ILA ++R+ K AP HGL L +NYN
Sbjct: 191 GFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGK---MAPGHGLYLWEVNYN 246
>R8RU11_BACCE (tr|R8RU11) tRNA pseudouridine synthase A 1 OS=Bacillus cereus
BMG1.7 GN=IES_05692 PE=4 SV=1
Length = 247
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/239 (38%), Positives = 138/239 (57%), Gaps = 10/239 (4%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGAS-RTDAGVHAWGQVAHFVTPFNYDK 65
G+Q Q + TVQ +E+AL KL + +L V AS RTD+ VHA GQV HF TP + ++
Sbjct: 17 GYQIQPNHRTVQQEIEKALQ---KLHKGELVRVQASGRTDSTVHAKGQVIHFDTPLSLEE 73
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
+ I+A LN +LP DI +R++ EEFHAR+ + K Y Y++ D F+R++ Y
Sbjct: 74 WQWINA-LNTMLPDDIVIRQVEKKTEEFHARYGVEKKEYRYRVLLSKTADVFRRNYVYQY 132
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
PY L +R+A Y++G H+F++F +A + D V+ I+ ++ E + G+
Sbjct: 133 PYPLEINSIRKAIPYFIGTHDFTSFCSAKTDK--KDKVRTIYEIELIEQNDEIIFRFVGN 190
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
GFLY VR + L+ +G+ L PD I ILA ++R+ K AP HGL L +NYN
Sbjct: 191 GFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGK---MAPGHGLYLWEVNYN 246
>R8R3E2_BACCE (tr|R8R3E2) tRNA pseudouridine synthase A 1 OS=Bacillus cereus
BAG5X12-1 GN=IEG_05361 PE=4 SV=1
Length = 247
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/239 (38%), Positives = 138/239 (57%), Gaps = 10/239 (4%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGAS-RTDAGVHAWGQVAHFVTPFNYDK 65
G+Q Q + TVQ +E+AL KL + +L V AS RTD+ VHA GQV HF TP + ++
Sbjct: 17 GYQIQPNHRTVQQEIEKALQ---KLHKGELVRVQASGRTDSTVHAKGQVIHFDTPLSLEE 73
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
+ I+A LN +LP DI +R++ EEFHAR+ + K Y Y++ D F+R++ Y
Sbjct: 74 WQWINA-LNTMLPDDIVIRQVEKKTEEFHARYGVEKKEYRYRVLLSKTADVFRRNYVYQY 132
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
PY L +R+A Y++G H+F++F +A + D V+ I+ ++ E + G+
Sbjct: 133 PYPLEINSIRKAIPYFIGTHDFTSFCSAKTDK--KDKVRTIYEIELIEQNDEIIFRFVGN 190
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
GFLY VR + L+ +G+ L PD I ILA ++R+ K AP HGL L +NYN
Sbjct: 191 GFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGK---MAPGHGLYLWEVNYN 246
>R8QWG4_BACCE (tr|R8QWG4) tRNA pseudouridine synthase A 1 OS=Bacillus cereus
ISP2954 GN=IGU_06324 PE=4 SV=1
Length = 247
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/239 (38%), Positives = 138/239 (57%), Gaps = 10/239 (4%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGAS-RTDAGVHAWGQVAHFVTPFNYDK 65
G+Q Q + TVQ +E+AL KL + +L V AS RTD+ VHA GQV HF TP + ++
Sbjct: 17 GYQIQPNHRTVQQEIEKALQ---KLHKGELVRVQASGRTDSTVHAKGQVIHFDTPLSLEE 73
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
+ I+A LN +LP DI +R++ EEFHAR+ + K Y Y++ D F+R++ Y
Sbjct: 74 WQWINA-LNTMLPDDIVIRQVEKKTEEFHARYGVEKKEYRYRVLLSKTADVFRRNYVYQY 132
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
PY L +R+A Y++G H+F++F +A + D V+ I+ ++ E + G+
Sbjct: 133 PYPLEINSIRKAIPYFIGTHDFTSFCSAKTDK--KDKVRTIYEIELIEQNDEIIFRFVGN 190
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
GFLY VR + L+ +G+ L PD I ILA ++R+ K AP HGL L +NYN
Sbjct: 191 GFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGK---MAPGHGLYLWEVNYN 246
>R8NKJ4_BACCE (tr|R8NKJ4) tRNA pseudouridine synthase A 1 OS=Bacillus cereus
HuB13-1 GN=IGG_06287 PE=4 SV=1
Length = 247
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/239 (38%), Positives = 138/239 (57%), Gaps = 10/239 (4%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGAS-RTDAGVHAWGQVAHFVTPFNYDK 65
G+Q Q + TVQ +E+AL KL + +L V AS RTD+ VHA GQV HF TP + ++
Sbjct: 17 GYQIQPNHRTVQQEIEKALQ---KLHKGELVRVQASGRTDSTVHAKGQVIHFDTPLSLEE 73
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
+ I+A LN +LP DI +R++ EEFHAR+ + K Y Y++ D F+R++ Y
Sbjct: 74 WQWINA-LNTMLPDDIVIRQVEKKTEEFHARYGVEKKEYRYRVLLSKTADVFRRNYVYQY 132
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
PY L +R+A Y++G H+F++F +A + D V+ I+ ++ E + G+
Sbjct: 133 PYPLEINSIRKAIPYFIGTHDFTSFCSAKTDK--KDKVRTIYEIELIEQNDEIIFRFVGN 190
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
GFLY VR + L+ +G+ L PD I ILA ++R+ K AP HGL L +NYN
Sbjct: 191 GFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGK---MAPGHGLYLWEVNYN 246
>R8E793_BACCE (tr|R8E793) tRNA pseudouridine synthase A 1 OS=Bacillus cereus
VD133 GN=IIU_04472 PE=4 SV=1
Length = 247
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/239 (38%), Positives = 138/239 (57%), Gaps = 10/239 (4%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGAS-RTDAGVHAWGQVAHFVTPFNYDK 65
G+Q Q + TVQ +E+AL KL + +L V AS RTD+ VHA GQV HF TP + ++
Sbjct: 17 GYQIQPNHRTVQQEIEKALQ---KLHKGELVRVQASGRTDSTVHAKGQVIHFDTPLSLEE 73
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
+ I+A LN +LP DI +R++ EEFHAR+ + K Y Y++ D F+R++ Y
Sbjct: 74 WQWINA-LNTMLPDDIVIRQVEKKTEEFHARYGVEKKEYRYRVLLSKTADVFRRNYVYQY 132
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
PY L +R+A Y++G H+F++F +A + D V+ I+ ++ E + G+
Sbjct: 133 PYPLEINSIRKAIPYFIGTHDFTSFCSAKTDK--KDKVRTIYEIELIEQNDEIIFRFVGN 190
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
GFLY VR + L+ +G+ L PD I ILA ++R+ K AP HGL L +NYN
Sbjct: 191 GFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGK---MAPGHGLYLWEVNYN 246
>J9BKP2_BACCE (tr|J9BKP2) tRNA pseudouridine synthase A OS=Bacillus cereus HD73
GN=truA PE=3 SV=1
Length = 247
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/239 (38%), Positives = 138/239 (57%), Gaps = 10/239 (4%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGAS-RTDAGVHAWGQVAHFVTPFNYDK 65
G+Q Q + TVQ +E+AL KL + +L V AS RTD+ VHA GQV HF TP + ++
Sbjct: 17 GYQIQPNHRTVQQEIEKALQ---KLHKGELVRVQASGRTDSTVHAKGQVIHFDTPLSLEE 73
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
+ I+A LN +LP DI +R++ EEFHAR+ + K Y Y++ D F+R++ Y
Sbjct: 74 WQWINA-LNTMLPDDIVIRQVEKKTEEFHARYGVEKKEYRYRVLLSKTADVFRRNYVYQY 132
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
PY L +R+A Y++G H+F++F +A + D V+ I+ ++ E + G+
Sbjct: 133 PYPLEINSIRKAIPYFIGTHDFTSFCSAKTDK--KDKVRTIYEIELIEQNDEIIFRFVGN 190
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
GFLY VR + L+ +G+ L PD I ILA ++R+ K AP HGL L +NYN
Sbjct: 191 GFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGK---MAPGHGLYLWEVNYN 246
>J8A8H5_BACCE (tr|J8A8H5) tRNA pseudouridine synthase A OS=Bacillus cereus
BAG4O-1 GN=truA PE=3 SV=1
Length = 247
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/239 (38%), Positives = 138/239 (57%), Gaps = 10/239 (4%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGAS-RTDAGVHAWGQVAHFVTPFNYDK 65
G+Q Q + TVQ +E+AL KL + +L V AS RTD+ VHA GQV HF TP + ++
Sbjct: 17 GYQIQPNHRTVQQEIEKALQ---KLHKGELVRVQASGRTDSTVHAKGQVIHFDTPLSLEE 73
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
+ I+A LN +LP DI +R++ EEFHAR+ + K Y Y++ D F+R++ Y
Sbjct: 74 WQWINA-LNTMLPDDIVIRQVEKKTEEFHARYGVEKKEYRYRVLLSKTADVFRRNYVYQY 132
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
PY L +R+A Y++G H+F++F +A + D V+ I+ ++ E + G+
Sbjct: 133 PYPLEINSIRKAIPYFIGTHDFTSFCSAKTDK--KDKVRTIYEIELIEQNDEIIFRFVGN 190
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
GFLY VR + L+ +G+ L PD I ILA ++R+ K AP HGL L +NYN
Sbjct: 191 GFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGK---MAPGHGLYLWEVNYN 246
>J7Y8P4_BACCE (tr|J7Y8P4) tRNA pseudouridine synthase A OS=Bacillus cereus
BAG4X12-1 GN=truA PE=3 SV=1
Length = 247
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/239 (38%), Positives = 138/239 (57%), Gaps = 10/239 (4%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGAS-RTDAGVHAWGQVAHFVTPFNYDK 65
G+Q Q + TVQ +E+AL KL + +L V AS RTD+ VHA GQV HF TP + ++
Sbjct: 17 GYQIQPNHRTVQQEIEKALQ---KLHKGELVRVQASGRTDSTVHAKGQVIHFDTPLSLEE 73
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
+ I+A LN +LP DI +R++ EEFHAR+ + K Y Y++ D F+R++ Y
Sbjct: 74 WQWINA-LNTMLPDDIVIRQVEKKTEEFHARYGVEKKEYRYRVLLSKTADVFRRNYVYQY 132
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
PY L +R+A Y++G H+F++F +A + D V+ I+ ++ E + G+
Sbjct: 133 PYPLEINSIRKAIPYFIGTHDFTSFCSAKTDK--KDKVRTIYEIELIEQNDEIIFRFVGN 190
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
GFLY VR + L+ +G+ L PD I ILA ++R+ K AP HGL L +NYN
Sbjct: 191 GFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGK---MAPGHGLYLWEVNYN 246
>J7WQU0_BACCE (tr|J7WQU0) tRNA pseudouridine synthase A OS=Bacillus cereus
BAG3O-2 GN=truA PE=3 SV=1
Length = 247
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/239 (38%), Positives = 138/239 (57%), Gaps = 10/239 (4%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGAS-RTDAGVHAWGQVAHFVTPFNYDK 65
G+Q Q + TVQ +E+AL KL + +L V AS RTD+ VHA GQV HF TP + ++
Sbjct: 17 GYQIQPNHRTVQQEIEKALQ---KLHKGELVRVQASGRTDSTVHAKGQVIHFDTPLSLEE 73
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
+ I+A LN +LP DI +R++ EEFHAR+ + K Y Y++ D F+R++ Y
Sbjct: 74 WQWINA-LNTMLPDDIVIRQVEKKTEEFHARYGVEKKEYRYRVLLSKTADVFRRNYVYQY 132
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
PY L +R+A Y++G H+F++F +A + D V+ I+ ++ E + G+
Sbjct: 133 PYPLEINSIRKAIPYFIGTHDFTSFCSAKTDK--KDKVRTIYEIELIEQNDEIIFRFVGN 190
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
GFLY VR + L+ +G+ L PD I ILA ++R+ K AP HGL L +NYN
Sbjct: 191 GFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGK---MAPGHGLYLWEVNYN 246
>J7W7Q7_BACCE (tr|J7W7Q7) tRNA pseudouridine synthase A OS=Bacillus cereus
BAG3X2-2 GN=truA PE=3 SV=1
Length = 247
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/239 (38%), Positives = 138/239 (57%), Gaps = 10/239 (4%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGAS-RTDAGVHAWGQVAHFVTPFNYDK 65
G+Q Q + TVQ +E+AL KL + +L V AS RTD+ VHA GQV HF TP + ++
Sbjct: 17 GYQIQPNHRTVQQEIEKALQ---KLHKGELVRVQASGRTDSTVHAKGQVIHFDTPLSLEE 73
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
+ I+A LN +LP DI +R++ EEFHAR+ + K Y Y++ D F+R++ Y
Sbjct: 74 WQWINA-LNTMLPDDIVIRQVEKKTEEFHARYGVEKKEYRYRVLLSKTADVFRRNYVYQY 132
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
PY L +R+A Y++G H+F++F +A + D V+ I+ ++ E + G+
Sbjct: 133 PYPLEINSIRKAIPYFIGTHDFTSFCSAKTDK--KDKVRTIYEIELIEQNDEIIFRFVGN 190
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
GFLY VR + L+ +G+ L PD I ILA ++R+ K AP HGL L +NYN
Sbjct: 191 GFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGK---MAPGHGLYLWEVNYN 246
>G9QG73_9BACI (tr|G9QG73) tRNA pseudouridine synthase A OS=Bacillus sp.
7_6_55CFAA_CT2 GN=truA PE=3 SV=1
Length = 247
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/239 (38%), Positives = 138/239 (57%), Gaps = 10/239 (4%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGAS-RTDAGVHAWGQVAHFVTPFNYDK 65
G+Q Q + TVQ +E+AL KL + +L V AS RTD+ VHA GQV HF TP + ++
Sbjct: 17 GYQIQPNHRTVQQEIEKALQ---KLHKGELVRVQASGRTDSTVHAKGQVIHFDTPLSLEE 73
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
+ I+A LN +LP DI +R++ EEFHAR+ + K Y Y++ D F+R++ Y
Sbjct: 74 WQWINA-LNTMLPDDIVIRQVEKKTEEFHARYGVEKKEYRYRVLLSKTADVFRRNYVYQY 132
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
PY L +R+A Y++G H+F++F +A + D V+ I+ ++ E + G+
Sbjct: 133 PYPLEINSIRKAIPYFIGTHDFTSFCSAKTDK--KDKVRTIYEIELIEQNDEIIFRFVGN 190
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
GFLY VR + L+ +G+ L PD I ILA ++R+ K AP HGL L +NYN
Sbjct: 191 GFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGK---MAPGHGLYLWEVNYN 246
>E6LVC0_9LACO (tr|E6LVC0) tRNA pseudouridine synthase A OS=Lactobacillus iners
ATCC 55195 GN=truA PE=3 SV=1
Length = 260
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 90/239 (37%), Positives = 140/239 (58%), Gaps = 7/239 (2%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDKL 66
G+Q Q + T+Q V+E AL + TK K + + G+ RTDAGVHA GQV HF P N
Sbjct: 17 GFQKQPNQRTIQGVIEDALLKMTK--GKHVIVHGSGRTDAGVHAKGQVIHFDYPGNVIPA 74
Query: 67 EDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHSP 126
+++ ALN L+P DI + V ++FH ++S K+K Y Y I DPF+R++ H P
Sbjct: 75 KNMLLALNALMPRDIIFLDSELVNDDFHVQYSTKAKWYRYIINQSRFTDPFRRNYTGHCP 134
Query: 127 YKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGSG 186
YKL+ M++AA Y +GKH+F++FA + + D V+ IF ++++ G + L+V G G
Sbjct: 135 YKLDMLKMKKAATYLLGKHDFTSFAASGGQ--IVDKVRTIFYINLEQNGDEIVLDVIGDG 192
Query: 187 FLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYNE 245
FLY VR + LL+ IG + ++ I+ ++DR++ AP GL L + Y++
Sbjct: 193 FLYNMVRIITGLLIDIGHGQKDVEDVEKIILAKDRQKARNT---APASGLYLYHVFYDD 248
>E3C2W5_9LACO (tr|E3C2W5) tRNA pseudouridine synthase A OS=Lactobacillus iners
LEAF 3008A-a GN=truA PE=3 SV=1
Length = 260
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 90/239 (37%), Positives = 140/239 (58%), Gaps = 7/239 (2%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDKL 66
G+Q Q + T+Q V+E AL + TK K + + G+ RTDAGVHA GQV HF P N
Sbjct: 17 GFQKQPNQRTIQGVIEDALLKMTK--GKHVIVHGSGRTDAGVHAKGQVIHFDYPGNVIPA 74
Query: 67 EDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHSP 126
+++ ALN L+P DI + V ++FH ++S K+K Y Y I DPF+R++ H P
Sbjct: 75 KNMLLALNALMPRDIIFLDSELVNDDFHVQYSTKAKWYRYIINQSRFTDPFRRNYTGHCP 134
Query: 127 YKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGSG 186
YKL+ M++AA Y +GKH+F++FA + + D V+ IF ++++ G + L+V G G
Sbjct: 135 YKLDMLKMKKAATYLLGKHDFTSFAASGGQ--IVDKVRTIFYINLEQNGDEIVLDVIGDG 192
Query: 187 FLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYNE 245
FLY VR + LL+ IG + ++ I+ ++DR++ AP GL L + Y++
Sbjct: 193 FLYNMVRIITGLLIDIGHGQKDVEDVEKIILAKDRQKARNT---APASGLYLYHVFYDD 248
>E3BZZ1_9LACO (tr|E3BZZ1) tRNA pseudouridine synthase A OS=Lactobacillus iners
LEAF 2062A-h1 GN=truA PE=3 SV=1
Length = 260
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 90/239 (37%), Positives = 140/239 (58%), Gaps = 7/239 (2%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDKL 66
G+Q Q + T+Q V+E AL + TK K + + G+ RTDAGVHA GQV HF P N
Sbjct: 17 GFQKQPNQRTIQGVIEDALLKMTK--GKHVIVHGSGRTDAGVHAKGQVIHFDYPGNVIPA 74
Query: 67 EDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHSP 126
+++ ALN L+P DI + V ++FH ++S K+K Y Y I DPF+R++ H P
Sbjct: 75 KNMLLALNALMPRDIIFLDSELVNDDFHVQYSTKAKWYRYIINQSRFTDPFRRNYTGHCP 134
Query: 127 YKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGSG 186
YKL+ M++AA Y +GKH+F++FA + + D V+ IF ++++ G + L+V G G
Sbjct: 135 YKLDMLKMKKAATYLLGKHDFTSFAASGGQ--IVDKVRTIFYINLEQNGDEIVLDVIGDG 192
Query: 187 FLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYNE 245
FLY VR + LL+ IG + ++ I+ ++DR++ AP GL L + Y++
Sbjct: 193 FLYNMVRIITGLLIDIGHGQKDVEDVEKIILAKDRQKARNT---APASGLYLYHVFYDD 248
>E1NU14_9LACO (tr|E1NU14) tRNA pseudouridine synthase A OS=Lactobacillus iners
LactinV 01V1-a GN=truA PE=3 SV=1
Length = 260
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 90/239 (37%), Positives = 140/239 (58%), Gaps = 7/239 (2%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDKL 66
G+Q Q + T+Q V+E AL + TK K + + G+ RTDAGVHA GQV HF P N
Sbjct: 17 GFQKQPNQRTIQGVIEDALLKMTK--GKHVIVHGSGRTDAGVHAKGQVIHFDYPGNVIPA 74
Query: 67 EDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHSP 126
+++ ALN L+P DI + V ++FH ++S K+K Y Y I DPF+R++ H P
Sbjct: 75 KNMLLALNALMPRDIIFLDSELVNDDFHVQYSTKAKWYRYIINQSRFTDPFRRNYTGHCP 134
Query: 127 YKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGSG 186
YKL+ M++AA Y +GKH+F++FA + + D V+ IF ++++ G + L+V G G
Sbjct: 135 YKLDMLKMKKAATYLLGKHDFTSFAASGGQ--IVDKVRTIFYINLEQNGDEIVLDVIGDG 192
Query: 187 FLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYNE 245
FLY VR + LL+ IG + ++ I+ ++DR++ AP GL L + Y++
Sbjct: 193 FLYNMVRIITGLLIDIGHGQKDVEDVEKIILAKDRQKARNT---APASGLYLYHVFYDD 248
>E1NP81_9LACO (tr|E1NP81) tRNA pseudouridine synthase A OS=Lactobacillus iners
LactinV 03V1-b GN=truA PE=3 SV=1
Length = 260
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 90/239 (37%), Positives = 140/239 (58%), Gaps = 7/239 (2%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDKL 66
G+Q Q + T+Q V+E AL + TK K + + G+ RTDAGVHA GQV HF P N
Sbjct: 17 GFQKQPNQRTIQGVIEDALLKMTK--GKHVIVHGSGRTDAGVHAKGQVIHFDYPGNVIPA 74
Query: 67 EDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHSP 126
+++ ALN L+P DI + V ++FH ++S K+K Y Y I DPF+R++ H P
Sbjct: 75 KNMLLALNALMPRDIIFLDSELVNDDFHVQYSTKAKWYRYIINQSRFTDPFRRNYTGHCP 134
Query: 127 YKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGSG 186
YKL+ M++AA Y +GKH+F++FA + + D V+ IF ++++ G + L+V G G
Sbjct: 135 YKLDMLKMKKAATYLLGKHDFTSFAASGGQ--IVDKVRTIFYINLEQNGDEIVLDVIGDG 192
Query: 187 FLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYNE 245
FLY VR + LL+ IG + ++ I+ ++DR++ AP GL L + Y++
Sbjct: 193 FLYNMVRIITGLLIDIGHGQKDVEDVEKIILAKDRQKARNT---APASGLYLYHVFYDD 248
>E1NJE1_9LACO (tr|E1NJE1) tRNA pseudouridine synthase A OS=Lactobacillus iners
LactinV 09V1-c GN=truA PE=3 SV=1
Length = 260
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 90/239 (37%), Positives = 140/239 (58%), Gaps = 7/239 (2%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDKL 66
G+Q Q + T+Q V+E AL + TK K + + G+ RTDAGVHA GQV HF P N
Sbjct: 17 GFQKQPNQRTIQGVIEDALLKMTK--GKHVIVHGSGRTDAGVHAKGQVIHFDYPGNVIPA 74
Query: 67 EDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHSP 126
+++ ALN L+P DI + V ++FH ++S K+K Y Y I DPF+R++ H P
Sbjct: 75 KNMLLALNALMPRDIIFLDSELVNDDFHVQYSTKAKWYRYIINQSRFTDPFRRNYTGHCP 134
Query: 127 YKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGSG 186
YKL+ M++AA Y +GKH+F++FA + + D V+ IF ++++ G + L+V G G
Sbjct: 135 YKLDMLKMKKAATYLLGKHDFTSFAASGGQ--IVDKVRTIFYINLEQNGDEIVLDVIGDG 192
Query: 187 FLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYNE 245
FLY VR + LL+ IG + ++ I+ ++DR++ AP GL L + Y++
Sbjct: 193 FLYNMVRIITGLLIDIGHGQKDVEDVEKIILAKDRQKARNT---APASGLYLYHVFYDD 248
>E1NFQ4_9LACO (tr|E1NFQ4) tRNA pseudouridine synthase A OS=Lactobacillus iners
LactinV 11V1-d GN=truA PE=3 SV=1
Length = 260
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 90/239 (37%), Positives = 140/239 (58%), Gaps = 7/239 (2%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDKL 66
G+Q Q + T+Q V+E AL + TK K + + G+ RTDAGVHA GQV HF P N
Sbjct: 17 GFQKQPNQRTIQGVIEDALLKMTK--GKHVIVHGSGRTDAGVHAKGQVIHFDYPGNVIPA 74
Query: 67 EDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHSP 126
+++ ALN L+P DI + V ++FH ++S K+K Y Y I DPF+R++ H P
Sbjct: 75 KNMLLALNALMPRDIIFLDSELVNDDFHVQYSTKAKWYRYIINQSRFTDPFRRNYTGHCP 134
Query: 127 YKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGSG 186
YKL+ M++AA Y +GKH+F++FA + + D V+ IF ++++ G + L+V G G
Sbjct: 135 YKLDMLKMKKAATYLLGKHDFTSFAASGGQ--IVDKVRTIFYINLEQNGDEIVLDVIGDG 192
Query: 187 FLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYNE 245
FLY VR + LL+ IG + ++ I+ ++DR++ AP GL L + Y++
Sbjct: 193 FLYNMVRIITGLLIDIGHGQKDVEDVEKIILAKDRQKARNT---APASGLYLYHVFYDD 248
>C8PBG3_9LACO (tr|C8PBG3) tRNA pseudouridine synthase A OS=Lactobacillus iners
DSM 13335 GN=truA PE=3 SV=1
Length = 260
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 90/239 (37%), Positives = 140/239 (58%), Gaps = 7/239 (2%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDKL 66
G+Q Q + T+Q V+E AL + TK K + + G+ RTDAGVHA GQV HF P N
Sbjct: 17 GFQKQPNQRTIQGVIEDALLKMTK--GKHVIVHGSGRTDAGVHAKGQVIHFDYPGNVIPA 74
Query: 67 EDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHSP 126
+++ ALN L+P DI + V ++FH ++S K+K Y Y I DPF+R++ H P
Sbjct: 75 KNMLLALNALMPRDIIFLDSELVNDDFHVQYSTKAKWYRYIINQSRFTDPFRRNYTGHCP 134
Query: 127 YKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGSG 186
YKL+ M++AA Y +GKH+F++FA + + D V+ IF ++++ G + L+V G G
Sbjct: 135 YKLDMLKMKKAATYLLGKHDFTSFAASGGQ--IVDKVRTIFYINLEQNGDEIVLDVIGDG 192
Query: 187 FLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYNE 245
FLY VR + LL+ IG + ++ I+ ++DR++ AP GL L + Y++
Sbjct: 193 FLYNMVRIITGLLIDIGHGQKDVEDVEKIILAKDRQKARNT---APASGLYLYHVFYDD 248
>C2WXW8_BACCE (tr|C2WXW8) tRNA pseudouridine synthase A OS=Bacillus cereus
Rock4-18 GN=truA PE=3 SV=1
Length = 252
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 94/239 (39%), Positives = 135/239 (56%), Gaps = 10/239 (4%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGAS-RTDAGVHAWGQVAHFVTPFNYDK 65
G+Q Q TVQ +E+AL KL + +L V AS RTD+ VHA GQV HF TP + ++
Sbjct: 22 GYQIQPQHRTVQQEIEKALQ---KLHKGELVRVQASGRTDSTVHAKGQVIHFDTPLSLEE 78
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
+ ALN +LP DI +R++ EEFHAR+ + K Y Y++ D F+R++ Y
Sbjct: 79 WQ-WSNALNTMLPDDIVIRQVEKKTEEFHARYGVERKEYRYRVLLSKTADVFRRNYVYQY 137
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
PY L +R+A Y++G H+F++F +A + D V+ IF ++ E L G+
Sbjct: 138 PYPLEINSIRKAIPYFIGTHDFTSFCSAKTDK--KDKVRTIFEIELIEQDDELIFRFVGN 195
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
GFLY VR + L+ IG+ L PD I ILA ++R+ K AP HGL L +NYN
Sbjct: 196 GFLYNMVRIIVGTLLNIGQGKLDPDSIPEILAKQNRQFAGK---MAPGHGLYLWQVNYN 251
>R6FYD9_9FIRM (tr|R6FYD9) tRNA pseudouridine synthase A OS=Eubacterium sp.
CAG:192 GN=BN525_00139 PE=4 SV=1
Length = 246
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 86/239 (35%), Positives = 135/239 (56%), Gaps = 9/239 (3%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDKL 66
GWQ Q + TV+ ++ R L+ L ++D+ ++GASRTD+GVHA VA F T
Sbjct: 17 GWQIQKNGITVEEIINRELS---SLLKEDIAVIGASRTDSGVHAVANVAVFDTDTKI-PA 72
Query: 67 EDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHSP 126
E I ALN LP DIR+++ VP++FH R+ +K Y YKI N DP R + +
Sbjct: 73 EKISFALNQRLPDDIRIQKSEEVPQDFHPRYCNSTKTYEYKILNRRFPDPLNRLYTHFVY 132
Query: 127 YKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGSG 186
L+ M++AA+Y VG+H+F++F +A V V+ ++ DV + ++ +++ G+G
Sbjct: 133 LPLDVDKMKKAAEYIVGEHDFASFCSAGSQ--VKTTVRTVYTLDVSKENDIISIKISGNG 190
Query: 187 FLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYNE 245
FLY VR + ++++G PP+ ++ IL S+DR AP GL L+ I Y E
Sbjct: 191 FLYNMVRIIVGTMLKVGLSVYPPEHVKEILDSKDRYMAGPK---APARGLTLIGIEYEE 246
>R8MBI7_BACCE (tr|R8MBI7) tRNA pseudouridine synthase A 1 OS=Bacillus cereus
VD131 GN=IIS_05833 PE=4 SV=1
Length = 247
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 93/239 (38%), Positives = 136/239 (56%), Gaps = 10/239 (4%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGAS-RTDAGVHAWGQVAHFVTPFNYDK 65
G+Q Q TVQ +E+AL KL + +L V AS RTD+ VHA GQV HF TP + ++
Sbjct: 17 GYQIQPQHRTVQQEIEKALQ---KLHKGELVRVQASGRTDSTVHAKGQVIHFDTPLSLEE 73
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
+ + ALN +LP DI +R++ EEFHAR+ + K Y Y++ D F+R++ Y
Sbjct: 74 WQ-WNNALNTMLPDDIVIRQVEKKTEEFHARYGVERKEYRYRVLLSKTADVFRRNYVYQY 132
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
PY L +R+A Y++G H+F++F +A + D V+ IF ++ E L G+
Sbjct: 133 PYPLEINSIRKAIPYFIGTHDFTSFCSAKTDK--KDKVRTIFEIELIEQDDELIFRFVGN 190
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
GFLY VR + L+ +G+ L PD I ILA ++R+ K AP HGL L +NYN
Sbjct: 191 GFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGK---MAPGHGLYLWQVNYN 246
>F0GRN4_9LACO (tr|F0GRN4) tRNA pseudouridine synthase A OS=Lactobacillus iners
UPII 60-B GN=truA PE=3 SV=1
Length = 260
Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 90/239 (37%), Positives = 140/239 (58%), Gaps = 7/239 (2%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDKL 66
G+Q Q + T+Q V+E AL + TK K + + G+ RTDAGVHA GQV HF P N
Sbjct: 17 GFQKQPNQRTIQGVIEDALLKMTK--GKHVIVHGSGRTDAGVHAKGQVIHFDYPGNVIPA 74
Query: 67 EDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHSP 126
+++ ALN L+P DI + V ++FH ++S K+K Y Y I DPF+R++ H P
Sbjct: 75 KNMLLALNALMPRDIIFLDSELVNDDFHVQYSTKAKWYRYIINQSRFTDPFRRNYTGHCP 134
Query: 127 YKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGSG 186
YKL+ M++AA Y +GKH+F++FA + + D V+ IF ++++ G + L+V G G
Sbjct: 135 YKLDMLKMKKAATYLLGKHDFTSFAASGGQ--IVDKVRTIFYINLEQHGDEIVLDVIGDG 192
Query: 187 FLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYNE 245
FLY VR + LL+ IG + ++ I+ ++DR++ AP GL L + Y++
Sbjct: 193 FLYNMVRIITGLLIDIGHGQKDVEDVEKIILAKDRQKARNT---APASGLYLYHVFYDD 248
>F7JTZ8_9FIRM (tr|F7JTZ8) tRNA pseudouridine synthase A OS=Lachnospiraceae
bacterium 2_1_58FAA GN=truA PE=3 SV=1
Length = 246
Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 93/239 (38%), Positives = 134/239 (56%), Gaps = 9/239 (3%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDKL 66
GWQ Q + TV+ V+ RAL KL +++ ++GASRTD+GVHA G VA F + +
Sbjct: 17 GWQIQPNGITVEEVLNRALR---KLTGEEITVIGASRTDSGVHALGNVAVFDSETSIPP- 72
Query: 67 EDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHSP 126
E I ALN LP DI V V ++H R+ K Y Y I N I DP +R Y
Sbjct: 73 ERISYALNQRLPDDIVVIRSEEVSADWHPRYCNSKKTYEYHILNAKIPDPTRRLTRYFVS 132
Query: 127 YKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGSG 186
+ L+ M++AAQY VG H+F +F N + V D V+ I+ D+ +G + + ++G+G
Sbjct: 133 FDLDIEKMKKAAQYLVGTHDFVSFCNVRTD--VEDTVRTIYSLDILPVGDEITIRIQGNG 190
Query: 187 FLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYNE 245
FLY VR + LV++G+ P+ +Q IL +++RK + APP GL LV I Y E
Sbjct: 191 FLYNMVRIIVGTLVRVGRGFYTPEQVQEILEAKNRK---AAGVTAPPQGLFLVGIEYEE 246
>A7B638_RUMGN (tr|A7B638) tRNA pseudouridine synthase A OS=Ruminococcus gnavus
ATCC 29149 GN=truA PE=3 SV=1
Length = 246
Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 93/239 (38%), Positives = 134/239 (56%), Gaps = 9/239 (3%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDKL 66
GWQ Q + TV+ V+ RAL KL +++ ++GASRTD+GVHA G VA F + +
Sbjct: 17 GWQIQPNGITVEEVLNRALR---KLTGEEITVIGASRTDSGVHALGNVAVFDSETSIPP- 72
Query: 67 EDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHSP 126
E I ALN LP DI V V ++H R+ K Y Y I N I DP +R Y
Sbjct: 73 ERISYALNQRLPDDIVVIRSEEVSADWHPRYCNSKKTYEYHILNAKIPDPTRRLTRYFVS 132
Query: 127 YKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGSG 186
+ L+ M++AAQY VG H+F +F N + V D V+ I+ D+ +G + + ++G+G
Sbjct: 133 FDLDIEKMKKAAQYLVGTHDFVSFCNVRTD--VEDTVRTIYSLDILPVGDEITIRIQGNG 190
Query: 187 FLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYNE 245
FLY VR + LV++G+ P+ +Q IL +++RK + APP GL LV I Y E
Sbjct: 191 FLYNMVRIIVGTLVRVGRGFYTPEQVQEILEAKNRK---AAGVTAPPQGLFLVGIEYEE 246
>Q00RV7_OSTTA (tr|Q00RV7) TRUA1_PARUW tRNA pseudouridine synthase A 1 (ISS)
OS=Ostreococcus tauri GN=Ot20g00590 PE=3 SV=1
Length = 705
Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 105/252 (41%), Positives = 137/252 (54%), Gaps = 17/252 (6%)
Query: 7 GWQYQMSP-PTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDK 65
G+Q Q + +VQ +ER LTR T R L L G+ RTD GVHA GQV HF + ++
Sbjct: 30 GFQRQGADVASVQRELERCLTRLTGEGRDALRLGGSGRTDGGVHARGQVVHFYSEKDWRS 89
Query: 66 LEDIH---AALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFA 122
ED A+NG+LP D+R FHARF A K Y Y + + D F R +A
Sbjct: 90 AEDFARCVKAMNGMLPRDVRCERFWRPHPAFHARFHATRKTYAYYVDARSPHDVFARAYA 149
Query: 123 YHSPYK-LNSAVMREAAQYYVGKHNFSAFANASHNDGVPD----PVKHIFRFDVKEMG-A 176
++ + +R A QY+VG +F AFAN S + D + IFRFDV E
Sbjct: 150 CQCGWRACDVDALRRACQYFVGTRDFRAFANTSRDKPTSDEDLNTTRTIFRFDVFEQADG 209
Query: 177 LLQLEVEGSGFLYRQVRNM--AALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPH 234
L++LE EG GFLYRQVRNM AAL+V G+E P+ I +LAS DR+ + AP
Sbjct: 210 LIRLECEGDGFLYRQVRNMVGAALVVASGRE--KPEWILDLLASGDRRRVPTA---APAR 264
Query: 235 GLCLVSINYNES 246
GL L S+ Y +S
Sbjct: 265 GLFLQSVEYPDS 276
>R5BUL1_9FIRM (tr|R5BUL1) tRNA pseudouridine synthase A OS=Blautia
hydrogenotrophica CAG:147 GN=BN499_02496 PE=4 SV=1
Length = 245
Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 91/238 (38%), Positives = 130/238 (54%), Gaps = 9/238 (3%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDKL 66
GWQ Q + T+Q + R L+ +L +++ +GASRTDAGVHA G VA F T
Sbjct: 17 GWQVQPNGITIQGELNRCLS---ELLGEEIETIGASRTDAGVHAMGNVAVFDTETRMPG- 72
Query: 67 EDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHSP 126
E I ALN LP DIR++ +P +FH R+ K Y Y+I N P +R ++Y
Sbjct: 73 EKISYALNQRLPEDIRIQLSEEMPMDFHPRYCDSVKTYEYRILNRRFQIPTERLYSYFYH 132
Query: 127 YKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGSG 186
YKL+ MREA Y +G+H+F++F A V V+ I +V+ G ++ + + G G
Sbjct: 133 YKLDEKKMREATSYLIGRHDFASFCGAGAQ--VKSTVRTIRSVEVERFGDMVTIRISGEG 190
Query: 187 FLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
FLY VR +A L++IG PP+ +Q IL +RDR+ AP GL L+ I Y
Sbjct: 191 FLYNMVRIIAGTLIEIGNGQYPPERMQEILDARDREWAGP---TAPAKGLTLLGIQYE 245
>C0CK95_9FIRM (tr|C0CK95) tRNA pseudouridine synthase A OS=Blautia
hydrogenotrophica DSM 10507 GN=truA PE=3 SV=1
Length = 245
Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 91/238 (38%), Positives = 130/238 (54%), Gaps = 9/238 (3%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDKL 66
GWQ Q + T+Q + R L+ +L +++ +GASRTDAGVHA G VA F T
Sbjct: 17 GWQVQPNGITIQGELNRCLS---ELLGEEIETIGASRTDAGVHAMGNVAVFDTETRMPG- 72
Query: 67 EDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHSP 126
E I ALN LP DIR++ +P +FH R+ K Y Y+I N P +R ++Y
Sbjct: 73 EKISYALNQRLPEDIRIQLSEEMPMDFHPRYCDSVKTYEYRILNRRFQIPTERLYSYFYH 132
Query: 127 YKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGSG 186
YKL+ MREA Y +G+H+F++F A V V+ I +V+ G ++ + + G G
Sbjct: 133 YKLDEKKMREATSYLIGRHDFASFCGAGAQ--VKSTVRTIRSVEVERFGDMVTIRISGEG 190
Query: 187 FLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
FLY VR +A L++IG PP+ +Q IL +RDR+ AP GL L+ I Y
Sbjct: 191 FLYNMVRIIAGTLIEIGNGQYPPERMQEILDARDREWAGP---TAPAKGLTLLGIQYE 245
>R5R4Q0_9FIRM (tr|R5R4Q0) tRNA pseudouridine synthase A 2 OS=Firmicutes bacterium
CAG:646 GN=BN747_01262 PE=4 SV=1
Length = 249
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 97/239 (40%), Positives = 131/239 (54%), Gaps = 9/239 (3%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDKL 66
GWQ Q + VQ V+ R L+ Q + +GASRTDAGVHA G VA F T
Sbjct: 17 GWQVQPNGLAVQEVLNRCLSEFLGEQ---ITTIGASRTDAGVHALGNVAVFDTEARMPA- 72
Query: 67 EDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHSP 126
+ I ALN LP DI++RE VP +FH RF K Y YKIYN DP +R + Y
Sbjct: 73 DRISYALNTRLPEDIKIRESREVPLDFHPRFQQTVKTYEYKIYNQRFPDPTRRLYTYFYY 132
Query: 127 YKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGSG 186
Y L+ M+EAA Y VG+H+F +F +++ V V+ I+ V+ ++ + + G+G
Sbjct: 133 YPLDVKKMQEAADYLVGEHDFKSF--STYKPEVESTVRTIYDLQVERQEDVITIRIRGNG 190
Query: 187 FLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYNE 245
FLY VR +A L+++G PP +Q IL ++R ELA A P GL LV I Y E
Sbjct: 191 FLYNMVRIIAGTLIRVGGGFYPPGQVQTILEGKNR-ELAGET--ARPEGLTLVKIEYPE 246
>D7ARP5_THEM3 (tr|D7ARP5) tRNA pseudouridine synthase A OS=Thermoanaerobacter
mathranii (strain DSM 11426 / CIP 108742 / A3) GN=truA
PE=3 SV=1
Length = 240
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 89/237 (37%), Positives = 134/237 (56%), Gaps = 9/237 (3%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDKL 66
GWQYQ + TVQ V+++A+ + T +++ L+GASRTD GVHA QVA+F T
Sbjct: 13 GWQYQKNAITVQEVLQKAIKKVTG---EEVNLIGASRTDTGVHALYQVANFKTNTKIPA- 68
Query: 67 EDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHSP 126
E + ALN +LP DI + + V + FHAR+SAK K Y Y I N P R++ +H
Sbjct: 69 EKLPYALNSVLPDDIVITQAKDVEDSFHARYSAKRKRYKYLILNRKFRMPTMRNYCWHIS 128
Query: 127 YKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGSG 186
Y LN M++AA Y +G H+FSAF + + ++ ++ +++ + +E+E G
Sbjct: 129 YPLNVEKMKKAATYLIGTHDFSAFKASGSSK--TSTIRTVYDLIIEKNEDFINIEIEADG 186
Query: 187 FLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINY 243
FLY VR + L +G + + + +ILAS+DR K + APP GL L+ I Y
Sbjct: 187 FLYNMVRIIVGTLSYVGLGKIGENEVYNILASKDR---TKAGITAPPQGLYLIKIIY 240
>D5XAB7_THEPJ (tr|D5XAB7) tRNA pseudouridine synthase A OS=Thermincola potens
(strain JR) GN=truA PE=3 SV=1
Length = 246
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 94/239 (39%), Positives = 139/239 (58%), Gaps = 11/239 (4%)
Query: 7 GWQYQMSP--PTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYD 64
G+Q Q PT+Q +E+AL KL +++ + GA RTDAGVHA GQV +F T +
Sbjct: 17 GFQKQADQNLPTIQEALEKALR---KLTGEEISVTGAGRTDAGVHALGQVINFYTESSIP 73
Query: 65 KLEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYH 124
+ A LN +LP DI ++ P +FHA+F AK K Y Y I+NDT+ F R ++
Sbjct: 74 TGNFVRA-LNSVLPEDIVAKDAVEAPGDFHAQFWAKKKTYRYTIFNDTVPSVFYRRYSLF 132
Query: 125 SPYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEG 184
P KLN MR+AA + VG+H+FSAF A ++ ++R +V++ G L+ + +E
Sbjct: 133 VPCKLNVDNMRKAASFLVGQHDFSAFRAAGST--ARSSIRTMYRAEVEQEGELIHVYLEA 190
Query: 185 SGFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINY 243
+GFLY VR + L+ IG+ L + ++ I+AS DR LA + PP GLCL+ + Y
Sbjct: 191 NGFLYNMVRIITGTLLYIGQGKLRVEEMKDIIASGDRT-LAGPTV--PPQGLCLMRVEY 246
>J7ZQ78_BACCE (tr|J7ZQ78) tRNA pseudouridine synthase A OS=Bacillus cereus
BAG5X1-1 GN=truA PE=3 SV=1
Length = 247
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 94/243 (38%), Positives = 137/243 (56%), Gaps = 10/243 (4%)
Query: 3 IYTSGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGAS-RTDAGVHAWGQVAHFVTPF 61
I+ G+Q Q TVQ +E+AL KL + +L V AS RTD+ VHA GQV HF TP
Sbjct: 13 IHFCGYQIQPQHRTVQQEIEKALQ---KLHKGELVRVQASGRTDSTVHAKGQVIHFDTPL 69
Query: 62 NYDKLEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHF 121
+ ++ + ALN +LP DI +R++ EEFHAR+ + K Y Y++ D F+R++
Sbjct: 70 SLEEWQ-WSNALNTMLPDDIIIRQVEKKTEEFHARYGVEKKEYRYRVLLSKTADVFRRNY 128
Query: 122 AYHSPYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLE 181
Y PY L +R+A Y++G H+F++F +A + D V+ I+ ++ E L
Sbjct: 129 VYQYPYPLEIDSIRKAIPYFIGTHDFTSFCSAKTDK--KDKVRTIYEIELIEQDDELIFR 186
Query: 182 VEGSGFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSI 241
G+GFLY VR + L+ IG+ L PD I ILA ++R+ K AP HGL L +
Sbjct: 187 FVGNGFLYNMVRIIVGTLLNIGQGKLDPDSIPEILAKQNRQFAGK---MAPGHGLYLWQV 243
Query: 242 NYN 244
NYN
Sbjct: 244 NYN 246
>C2W3Q0_BACCE (tr|C2W3Q0) tRNA pseudouridine synthase A OS=Bacillus cereus
Rock3-44 GN=truA PE=3 SV=1
Length = 268
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 87/240 (36%), Positives = 138/240 (57%), Gaps = 14/240 (5%)
Query: 7 GWQ-YQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDK 65
GWQ + T+Q +E L+ ++ +++ ++G SRTDAGVHA QVA+F +K
Sbjct: 40 GWQRLGNNDNTIQGKIESVLS---EMVGQEIEIIGCSRTDAGVHALNQVANFKIE---EK 93
Query: 66 LED--IHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAY 123
L + + LN LP+DI + ++ VPE FHAR+++K+K Y YKI+N+ +PF R ++
Sbjct: 94 LSEPKVKKYLNQYLPNDISITDVEQVPERFHARYNSKAKTYLYKIWNEEHTNPFMRKYSM 153
Query: 124 HSPYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVE 183
H KLN M++AAQY +G H+F+AF+NA V+ ++ DV E +Q+ V
Sbjct: 154 HVQKKLNIESMQKAAQYLIGSHDFTAFSNAKSKK--KSMVREVYMLDVAESEGFIQIRVS 211
Query: 184 GSGFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINY 243
G+GFL+ VR + LV++G L D I IL ++ R ++ A GL L +++
Sbjct: 212 GNGFLHNMVRKIVGALVEVGLGQLDADAIPQILEAKQRNQI---NCLADASGLYLEKVDF 268
>I0UNA3_BACLI (tr|I0UNA3) tRNA pseudouridine synthase A OS=Bacillus licheniformis
WX-02 GN=truA PE=3 SV=1
Length = 247
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 90/238 (37%), Positives = 137/238 (57%), Gaps = 7/238 (2%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDKL 66
G+Q Q T+Q +E+AL K + + + +V + RTD+GVHA GQ HF +P + +
Sbjct: 16 GYQVQPGQRTIQDELEKALQTLHKAKER-IPVVSSGRTDSGVHAVGQTIHFDSPLSIPEA 74
Query: 67 EDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHSP 126
+ +A LN LLP DI VR+ V ++FHARFSAK K Y Y IY D F+R++AYH P
Sbjct: 75 KWPYA-LNALLPDDISVRKAEAVNDQFHARFSAKRKEYRYMIYRGRHPDVFKRYYAYHVP 133
Query: 127 YKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGSG 186
Y L+ ++EA++Y VG H+F++F V D V+ + + + G LQ+ + GSG
Sbjct: 134 YDLDMEKVKEASRYLVGTHDFTSFCATKTE--VKDKVRTVHELEWSDTGDGLQMRIVGSG 191
Query: 187 FLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
FLY VR +A L+ +G P I+ ++ +++R + AP HGL L + Y+
Sbjct: 192 FLYNMVRIIAGTLLDVGTGKFSPGDIEKMILAKNRDAAGR---TAPAHGLYLWRVIYD 246
>G3YYF8_9LACO (tr|G3YYF8) tRNA pseudouridine synthase A OS=Lactobacillus sp.
7_1_47FAA GN=truA PE=3 SV=1
Length = 260
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 89/239 (37%), Positives = 141/239 (58%), Gaps = 7/239 (2%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDKL 66
G+Q Q + T+Q V+E AL + TK K + + G+ RTDAGVHA GQV HF P N
Sbjct: 17 GFQKQPNQRTIQGVIEDALLKMTK--GKHVIVHGSGRTDAGVHAKGQVIHFDYPGNVIPA 74
Query: 67 EDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHSP 126
+++ ALN L+P DI + V ++FH ++S K+K Y Y I DPF+R++ H P
Sbjct: 75 KNMLLALNALMPRDIIFLDSELVNDDFHVQYSTKAKWYRYIINQSRFTDPFRRNYTGHCP 134
Query: 127 YKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGSG 186
YKL+ M++AA Y +GKH+F++FA + + D V+ IF ++++ G + L+V G G
Sbjct: 135 YKLDMLKMKKAATYLLGKHDFTSFAASGGQ--IVDKVRTIFYINLEQHGDEIVLDVIGDG 192
Query: 187 FLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYNE 245
FLY VR + LL+ IG + ++ I+ +++R+++ AP GL L + Y++
Sbjct: 193 FLYNMVRIITGLLIDIGHGQKEVEDVEKIILAKNRQQVRNT---APASGLYLYHVFYDD 248
>F3M090_9LACO (tr|F3M090) tRNA pseudouridine synthase A OS=Lactobacillus iners
SPIN 1401G GN=truA PE=3 SV=1
Length = 260
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 89/239 (37%), Positives = 141/239 (58%), Gaps = 7/239 (2%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDKL 66
G+Q Q + T+Q V+E AL + TK K + + G+ RTDAGVHA GQV HF P N
Sbjct: 17 GFQKQPNQRTIQGVIEDALLKMTK--GKHVIVHGSGRTDAGVHAKGQVIHFDYPGNVIPA 74
Query: 67 EDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHSP 126
+++ ALN L+P DI + V ++FH ++S K+K Y Y I DPF+R++ H P
Sbjct: 75 KNMLLALNALMPRDIIFLDSELVNDDFHVQYSTKAKWYRYIINQSRFTDPFRRNYTGHCP 134
Query: 127 YKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGSG 186
YKL+ M++AA Y +GKH+F++FA + + D V+ IF ++++ G + L+V G G
Sbjct: 135 YKLDMLKMKKAATYLLGKHDFTSFAASGGQ--IVDKVRTIFYINLEQHGDEIVLDVIGDG 192
Query: 187 FLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYNE 245
FLY VR + LL+ IG + ++ I+ +++R+++ AP GL L + Y++
Sbjct: 193 FLYNMVRIITGLLIDIGHGQKEVEDVEKIILAKNRQQVRNT---APASGLYLYHVFYDD 248
>F0GP82_9LACO (tr|F0GP82) tRNA pseudouridine synthase A OS=Lactobacillus iners
UPII 143-D GN=truA PE=3 SV=1
Length = 260
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 89/239 (37%), Positives = 141/239 (58%), Gaps = 7/239 (2%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDKL 66
G+Q Q + T+Q V+E AL + TK K + + G+ RTDAGVHA GQV HF P N
Sbjct: 17 GFQKQPNQRTIQGVIEDALLKMTK--GKHVIVHGSGRTDAGVHAKGQVIHFDYPGNVIPA 74
Query: 67 EDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHSP 126
+++ ALN L+P DI + V ++FH ++S K+K Y Y I DPF+R++ H P
Sbjct: 75 KNMLLALNALMPRDIIFLDSELVNDDFHVQYSTKAKWYRYIINQSRFTDPFRRNYTGHCP 134
Query: 127 YKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGSG 186
YKL+ M++AA Y +GKH+F++FA + + D V+ IF ++++ G + L+V G G
Sbjct: 135 YKLDMLKMKKAATYLLGKHDFTSFAASGGQ--IVDKVRTIFYINLEQHGDEIVLDVIGDG 192
Query: 187 FLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYNE 245
FLY VR + LL+ IG + ++ I+ +++R+++ AP GL L + Y++
Sbjct: 193 FLYNMVRIITGLLIDIGHGQKEVEDVEKIILAKNRQQVRNT---APASGLYLYHVFYDD 248
>E5WBS1_9BACI (tr|E5WBS1) tRNA pseudouridine synthase A OS=Bacillus sp. BT1B_CT2
GN=truA PE=3 SV=1
Length = 247
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 90/238 (37%), Positives = 137/238 (57%), Gaps = 7/238 (2%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDKL 66
G+Q Q T+Q +E+AL K + + + +V + RTD+GVHA GQ HF +P + +
Sbjct: 16 GYQVQPGQRTIQDELEKALQTLHKAKER-IPVVSSGRTDSGVHAVGQTIHFDSPLSIPEA 74
Query: 67 EDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHSP 126
+ +A LN LLP DI VR+ V ++FHARFSAK K Y Y IY D F+R++AYH P
Sbjct: 75 KWPYA-LNALLPDDISVRKAEAVNDQFHARFSAKRKEYRYMIYRGRHPDVFKRYYAYHVP 133
Query: 127 YKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGSG 186
Y L+ ++EA++Y VG H+F++F V D V+ + + + G LQ+ + GSG
Sbjct: 134 YDLDMEKVKEASRYLVGTHDFTSFCATKTE--VKDKVRTVHELEWSDTGDGLQMRIVGSG 191
Query: 187 FLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
FLY VR +A L+ +G P I+ ++ +++R + AP HGL L + Y+
Sbjct: 192 FLYNMVRIIAGTLLDVGTGKFSPGDIEKMILAKNRDAAGR---TAPAHGLYLWRVIYD 246
>E3BWW9_9LACO (tr|E3BWW9) tRNA pseudouridine synthase A OS=Lactobacillus iners
LEAF 2052A-d GN=truA PE=3 SV=1
Length = 260
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 89/239 (37%), Positives = 141/239 (58%), Gaps = 7/239 (2%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDKL 66
G+Q Q + T+Q V+E AL + TK K + + G+ RTDAGVHA GQV HF P N
Sbjct: 17 GFQKQPNQRTIQGVIEDALLKMTK--GKHVIVHGSGRTDAGVHAKGQVIHFDYPGNVIPA 74
Query: 67 EDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHSP 126
+++ ALN L+P DI + V ++FH ++S K+K Y Y I DPF+R++ H P
Sbjct: 75 KNMLLALNALMPRDIIFLDSELVNDDFHVQYSTKAKWYRYIINQSRFTDPFRRNYTGHCP 134
Query: 127 YKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGSG 186
YKL+ M++AA Y +GKH+F++FA + + D V+ IF ++++ G + L+V G G
Sbjct: 135 YKLDMLKMKKAATYLLGKHDFTSFAASGGQ--IVDKVRTIFYINLEQHGDEIVLDVIGDG 192
Query: 187 FLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYNE 245
FLY VR + LL+ IG + ++ I+ +++R+++ AP GL L + Y++
Sbjct: 193 FLYNMVRIITGLLIDIGHGQKEVEDVEKIILAKNRQQVRNT---APASGLYLYHVFYDD 248
>E3BRP3_9LACO (tr|E3BRP3) tRNA pseudouridine synthase A OS=Lactobacillus iners
LEAF 2053A-b GN=truA PE=3 SV=1
Length = 260
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 89/239 (37%), Positives = 141/239 (58%), Gaps = 7/239 (2%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDKL 66
G+Q Q + T+Q V+E AL + TK K + + G+ RTDAGVHA GQV HF P N
Sbjct: 17 GFQKQPNQRTIQGVIEDALLKMTK--GKHVIVHGSGRTDAGVHAKGQVIHFDYPGNVIPA 74
Query: 67 EDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHSP 126
+++ ALN L+P DI + V ++FH ++S K+K Y Y I DPF+R++ H P
Sbjct: 75 KNMLLALNALMPRDIIFLDSELVNDDFHVQYSTKAKWYRYIINQSRFTDPFRRNYTGHCP 134
Query: 127 YKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGSG 186
YKL+ M++AA Y +GKH+F++FA + + D V+ IF ++++ G + L+V G G
Sbjct: 135 YKLDMLKMKKAATYLLGKHDFTSFAASGGQ--IVDKVRTIFYINLEQHGDEIVLDVIGDG 192
Query: 187 FLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYNE 245
FLY VR + LL+ IG + ++ I+ +++R+++ AP GL L + Y++
Sbjct: 193 FLYNMVRIITGLLIDIGHGQKEVEDVEKIILAKNRQQVRNT---APASGLYLYHVFYDD 248
>J8ZVZ3_BACCE (tr|J8ZVZ3) tRNA pseudouridine synthase A OS=Bacillus cereus
BAG6O-2 GN=truA PE=3 SV=1
Length = 247
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 94/243 (38%), Positives = 137/243 (56%), Gaps = 10/243 (4%)
Query: 3 IYTSGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGAS-RTDAGVHAWGQVAHFVTPF 61
I+ G+Q Q TVQ +E+AL KL + +L V AS RTD+ VHA GQV HF TP
Sbjct: 13 IHFCGYQIQPQHRTVQQEIEKALQ---KLHKGELVRVQASGRTDSTVHAKGQVIHFDTPL 69
Query: 62 NYDKLEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHF 121
+ ++ + ALN +LP DI +R++ EEFHAR+ + K Y Y++ D F+R++
Sbjct: 70 SLEEWQ-WSNALNTMLPDDIIIRQVEKKTEEFHARYGVEKKEYRYRVLLSKTADVFRRNY 128
Query: 122 AYHSPYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLE 181
Y PY L +R+A Y++G H+F++F +A + D V+ I+ ++ E L
Sbjct: 129 VYQYPYPLEIDSIRKAIPYFIGTHDFTSFCSAKTDK--KDKVRTIYEIELIEQDDELIFR 186
Query: 182 VEGSGFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSI 241
G+GFLY VR + L+ IG+ L PD I ILA ++R+ K AP HGL L +
Sbjct: 187 FVGNGFLYNMVRIIVGTLLSIGQGKLDPDSIPEILAKQNRQFAGK---MAPGHGLYLWQV 243
Query: 242 NYN 244
NYN
Sbjct: 244 NYN 246
>E3GGZ0_EUBLK (tr|E3GGZ0) tRNA pseudouridine synthase A OS=Eubacterium limosum
(strain KIST612) GN=truA PE=3 SV=1
Length = 244
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 94/239 (39%), Positives = 135/239 (56%), Gaps = 11/239 (4%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATK-LQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYD 64
+GWQ Q + PTV E ALT A K + + + L G+ RTDAGVHA GQ AHF T
Sbjct: 16 AGWQRQPNAPTV----EEALTGAIKAVTGETVTLYGSGRTDAGVHALGQSAHFHTESRVP 71
Query: 65 KLEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYH 124
E AALN LP DIRV PE FH+R+SAK K+Y Y++Y + ++ PF +++H
Sbjct: 72 P-ERFAAALNTRLPGDIRVLSSCEAPEGFHSRYSAKGKVYTYQLYLNPVLSPFYAEYSWH 130
Query: 125 SPYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEG 184
Y ++ + M+ A+ ++G+H+F F A + V V+ I ++ GALL++ G
Sbjct: 131 VNYPVDVSRMKAASAAFLGEHDFCGFMAAGSS--VRGTVRTIRAITFEQEGALLRITYTG 188
Query: 185 SGFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINY 243
+GFLY VR M L +IG + + + I+AS DRK+ + APP GL L + Y
Sbjct: 189 NGFLYNMVRIMTGTLAEIGMGRIKAEALPGIIASCDRKQA---GMTAPPQGLFLREVLY 244
>A7GK52_BACCN (tr|A7GK52) tRNA pseudouridine synthase A OS=Bacillus cereus subsp.
cytotoxis (strain NVH 391-98) GN=truA PE=3 SV=1
Length = 247
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 92/239 (38%), Positives = 135/239 (56%), Gaps = 10/239 (4%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGAS-RTDAGVHAWGQVAHFVTPFNYDK 65
G+Q Q TVQ +E+AL KL + +L V AS RTD+ VHA GQV HF TP + ++
Sbjct: 17 GYQIQPQHRTVQQEIEKALQ---KLHKGELVRVQASGRTDSTVHAKGQVIHFDTPLSLEE 73
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
+ ALN LLP DI + ++ EEFHAR+ K Y Y++ D F+R++ Y
Sbjct: 74 WQ-WGNALNTLLPDDIVIVQVEKKTEEFHARYGVVKKEYRYRVLLSKTADVFRRNYVYQY 132
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
PY ++ ++R+A Y++G H+F++F +A + D V+ I+ D+ E G L G+
Sbjct: 133 PYPIDIQLIRKAIPYFIGTHDFTSFCSAKTDK--KDKVRTIYEIDLFEQGDELVFRFVGN 190
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
GFLY VR + L+ +G+ + PD I ILA +DR+ K P HGL L +NYN
Sbjct: 191 GFLYNMVRIIVGTLLSVGQGKVDPDSIPEILAKQDRRFAGK---MVPGHGLYLWQVNYN 246
>R8NRX8_BACCE (tr|R8NRX8) tRNA pseudouridine synthase A 1 OS=Bacillus cereus
VD214 GN=IKI_05621 PE=4 SV=1
Length = 247
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 93/239 (38%), Positives = 135/239 (56%), Gaps = 10/239 (4%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGAS-RTDAGVHAWGQVAHFVTPFNYDK 65
G+Q Q TVQ +E+AL KL + +L V AS RTD+ VHA GQV HF TP + ++
Sbjct: 17 GYQIQPQHRTVQQEIEKALQ---KLHKGELVRVQASGRTDSTVHAKGQVIHFDTPLSLEE 73
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
+ ALN +LP DI +R++ EEFHAR+ + K Y Y++ D F+R++ Y
Sbjct: 74 WQ-WSNALNTMLPDDIVIRQVEKKTEEFHARYGVERKEYRYRVLLSKTADVFRRNYVYQY 132
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
PY L +R+A Y++G H+F++F +A + D V+ IF ++ E L G+
Sbjct: 133 PYPLEINSIRKAIPYFIGTHDFTSFCSAKTDK--KDKVRTIFEIELIEQDDELIFRFVGN 190
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
GFLY VR + L+ +G+ L PD I ILA ++R+ K AP HGL L +NYN
Sbjct: 191 GFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGK---MAPGHGLYLWQVNYN 246
>R8MID8_BACCE (tr|R8MID8) tRNA pseudouridine synthase A 1 OS=Bacillus cereus
HuA2-3 GN=IG5_05452 PE=4 SV=1
Length = 247
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 93/239 (38%), Positives = 135/239 (56%), Gaps = 10/239 (4%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGAS-RTDAGVHAWGQVAHFVTPFNYDK 65
G+Q Q TVQ +E+AL KL + +L V AS RTD+ VHA GQV HF TP + ++
Sbjct: 17 GYQIQPQHRTVQQEIEKALQ---KLHKGELVRVQASGRTDSTVHAKGQVIHFDTPLSLEE 73
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
+ ALN +LP DI +R++ EEFHAR+ + K Y Y++ D F+R++ Y
Sbjct: 74 WQ-WSNALNTMLPDDIVIRQVEKKTEEFHARYGVERKEYRYRVLLSKTADVFRRNYVYQY 132
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
PY L +R+A Y++G H+F++F +A + D V+ IF ++ E L G+
Sbjct: 133 PYPLEINSIRKAIPYFIGTHDFTSFCSAKTDK--KDKVRTIFEIELIEQDDELIFRFVGN 190
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
GFLY VR + L+ +G+ L PD I ILA ++R+ K AP HGL L +NYN
Sbjct: 191 GFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGK---MAPGHGLYLWQVNYN 246
>J9CH41_BACCE (tr|J9CH41) tRNA pseudouridine synthase A OS=Bacillus cereus HuB2-9
GN=truA PE=3 SV=1
Length = 247
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 93/239 (38%), Positives = 135/239 (56%), Gaps = 10/239 (4%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGAS-RTDAGVHAWGQVAHFVTPFNYDK 65
G+Q Q TVQ +E+AL KL + +L V AS RTD+ VHA GQV HF TP + ++
Sbjct: 17 GYQIQPQHRTVQQEIEKALQ---KLHKGELVRVQASGRTDSTVHAKGQVIHFDTPLSLEE 73
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
+ ALN +LP DI +R++ EEFHAR+ + K Y Y++ D F+R++ Y
Sbjct: 74 WQ-WSNALNTMLPDDIVIRQVEKKTEEFHARYGVERKEYRYRVLLSKTADVFRRNYVYQY 132
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
PY L +R+A Y++G H+F++F +A + D V+ IF ++ E L G+
Sbjct: 133 PYPLEINSIRKAIPYFIGTHDFTSFCSAKTDK--KDKVRTIFEIELIEQDDELIFRFVGN 190
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
GFLY VR + L+ +G+ L PD I ILA ++R+ K AP HGL L +NYN
Sbjct: 191 GFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGK---MAPGHGLYLWQVNYN 246
>J8ZVK7_BACCE (tr|J8ZVK7) tRNA pseudouridine synthase A OS=Bacillus cereus
BAG4X2-1 GN=truA PE=3 SV=1
Length = 247
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 93/239 (38%), Positives = 135/239 (56%), Gaps = 10/239 (4%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGAS-RTDAGVHAWGQVAHFVTPFNYDK 65
G+Q Q TVQ +E+AL KL + +L V AS RTD+ VHA GQV HF TP + ++
Sbjct: 17 GYQIQPQHRTVQQEIEKALQ---KLHKGELVRVQASGRTDSTVHAKGQVIHFDTPLSLEE 73
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
+ ALN +LP DI +R++ EEFHAR+ + K Y Y++ D F+R++ Y
Sbjct: 74 WQ-WSNALNTMLPDDIVIRQVEKKTEEFHARYGVERKEYRYRVLLSKTADVFRRNYVYQY 132
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
PY L +R+A Y++G H+F++F +A + D V+ IF ++ E L G+
Sbjct: 133 PYPLEINSIRKAIPYFIGTHDFTSFCSAKTDK--KDKVRTIFEIELIEQDDELIFRFVGN 190
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
GFLY VR + L+ +G+ L PD I ILA ++R+ K AP HGL L +NYN
Sbjct: 191 GFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGK---MAPGHGLYLWQVNYN 246
>J8Z2D2_BACCE (tr|J8Z2D2) tRNA pseudouridine synthase A OS=Bacillus cereus
BAG6O-1 GN=truA PE=3 SV=1
Length = 247
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 93/239 (38%), Positives = 135/239 (56%), Gaps = 10/239 (4%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGAS-RTDAGVHAWGQVAHFVTPFNYDK 65
G+Q Q TVQ +E+AL KL + +L V AS RTD+ VHA GQV HF TP + ++
Sbjct: 17 GYQIQPQHRTVQQEIEKALQ---KLHKGELVRVQASGRTDSTVHAKGQVIHFDTPLSLEE 73
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
+ ALN +LP DI +R++ EEFHAR+ + K Y Y++ D F+R++ Y
Sbjct: 74 WQ-WSNALNTMLPDDIVIRQVEKKTEEFHARYGVERKEYRYRVLLSKTADVFRRNYVYQY 132
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
PY L +R+A Y++G H+F++F +A + D V+ IF ++ E L G+
Sbjct: 133 PYPLEINSIRKAIPYFIGTHDFTSFCSAKTDK--KDKVRTIFEIELIEQDDELIFRFVGN 190
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
GFLY VR + L+ +G+ L PD I ILA ++R+ K AP HGL L +NYN
Sbjct: 191 GFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGK---MAPGHGLYLWQVNYN 246
>J8Q9A2_BACCE (tr|J8Q9A2) tRNA pseudouridine synthase A OS=Bacillus cereus
BAG1O-2 GN=truA PE=3 SV=1
Length = 247
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 93/239 (38%), Positives = 135/239 (56%), Gaps = 10/239 (4%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGAS-RTDAGVHAWGQVAHFVTPFNYDK 65
G+Q Q TVQ +E+AL KL + +L V AS RTD+ VHA GQV HF TP + ++
Sbjct: 17 GYQIQPQHRTVQQEIEKALQ---KLHKGELVRVQASGRTDSTVHAKGQVIHFDTPLSLEE 73
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
+ ALN +LP DI +R++ EEFHAR+ + K Y Y++ D F+R++ Y
Sbjct: 74 WQ-WSNALNTMLPDDIVIRQVEKKTEEFHARYGVERKEYRYRVLLSKTADVFRRNYVYQY 132
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
PY L +R+A Y++G H+F++F +A + D V+ IF ++ E L G+
Sbjct: 133 PYPLEINSIRKAIPYFIGTHDFTSFCSAKTDK--KDKVRTIFEIELIEQDDELIFRFVGN 190
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
GFLY VR + L+ +G+ L PD I ILA ++R+ K AP HGL L +NYN
Sbjct: 191 GFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGK---MAPGHGLYLWQVNYN 246
>J8K022_BACCE (tr|J8K022) tRNA pseudouridine synthase A OS=Bacillus cereus VD148
GN=truA PE=3 SV=1
Length = 247
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 93/239 (38%), Positives = 135/239 (56%), Gaps = 10/239 (4%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGAS-RTDAGVHAWGQVAHFVTPFNYDK 65
G+Q Q TVQ +E+AL KL + +L V AS RTD+ VHA GQV HF TP + ++
Sbjct: 17 GYQIQPQHRTVQQEIEKALQ---KLHKGELVRVQASGRTDSTVHAKGQVIHFDTPLSLEE 73
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
+ ALN +LP DI +R++ EEFHAR+ + K Y Y++ D F+R++ Y
Sbjct: 74 WQ-WSNALNTMLPDDIVIRQVEKKTEEFHARYGVERKEYRYRVLLSKTADVFRRNYVYQY 132
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
PY L +R+A Y++G H+F++F +A + D V+ IF ++ E L G+
Sbjct: 133 PYPLEINSIRKAIPYFIGTHDFTSFCSAKTDK--KDKVRTIFEIELIEQDDELIFRFVGN 190
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
GFLY VR + L+ +G+ L PD I ILA ++R+ K AP HGL L +NYN
Sbjct: 191 GFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGK---MAPGHGLYLWQVNYN 246
>J8JYY9_BACCE (tr|J8JYY9) tRNA pseudouridine synthase A OS=Bacillus cereus VD115
GN=truA PE=3 SV=1
Length = 247
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 93/239 (38%), Positives = 135/239 (56%), Gaps = 10/239 (4%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGAS-RTDAGVHAWGQVAHFVTPFNYDK 65
G+Q Q TVQ +E+AL KL + +L V AS RTD+ VHA GQV HF TP + ++
Sbjct: 17 GYQIQPQHRTVQQEIEKALQ---KLHKGELVRVQASGRTDSTVHAKGQVIHFDTPLSLEE 73
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
+ ALN +LP DI +R++ EEFHAR+ + K Y Y++ D F+R++ Y
Sbjct: 74 WQ-WSNALNTMLPDDIVIRQVEKKTEEFHARYGVERKEYRYRVLLSKTADVFRRNYVYQY 132
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
PY L +R+A Y++G H+F++F +A + D V+ IF ++ E L G+
Sbjct: 133 PYPLEINSIRKAIPYFIGTHDFTSFCSAKTDK--KDKVRTIFEIELIEQDDELIFRFVGN 190
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
GFLY VR + L+ +G+ L PD I ILA ++R+ K AP HGL L +NYN
Sbjct: 191 GFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGK---MAPGHGLYLWQVNYN 246
>J8ED18_BACCE (tr|J8ED18) tRNA pseudouridine synthase A OS=Bacillus cereus HuB5-5
GN=truA PE=3 SV=1
Length = 247
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 93/239 (38%), Positives = 135/239 (56%), Gaps = 10/239 (4%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGAS-RTDAGVHAWGQVAHFVTPFNYDK 65
G+Q Q TVQ +E+AL KL + +L V AS RTD+ VHA GQV HF TP + ++
Sbjct: 17 GYQIQPQHRTVQQEIEKALQ---KLHKGELVRVQASGRTDSTVHAKGQVIHFDTPLSLEE 73
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
+ ALN +LP DI +R++ EEFHAR+ + K Y Y++ D F+R++ Y
Sbjct: 74 WQ-WSNALNTMLPDDIVIRQVEKKTEEFHARYGVERKEYRYRVLLSKTADVFRRNYVYQY 132
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
PY L +R+A Y++G H+F++F +A + D V+ IF ++ E L G+
Sbjct: 133 PYPLEINSIRKAIPYFIGTHDFTSFCSAKTDK--KDKVRTIFEIELIEQDDELIFRFVGN 190
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
GFLY VR + L+ +G+ L PD I ILA ++R+ K AP HGL L +NYN
Sbjct: 191 GFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGK---MAPGHGLYLWQVNYN 246
>J8DD34_BACCE (tr|J8DD34) tRNA pseudouridine synthase A OS=Bacillus cereus
HuB4-10 GN=truA PE=3 SV=1
Length = 247
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 93/239 (38%), Positives = 135/239 (56%), Gaps = 10/239 (4%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGAS-RTDAGVHAWGQVAHFVTPFNYDK 65
G+Q Q TVQ +E+AL KL + +L V AS RTD+ VHA GQV HF TP + ++
Sbjct: 17 GYQIQPQHRTVQQEIEKALQ---KLHKGELVRVQASGRTDSTVHAKGQVIHFDTPLSLEE 73
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
+ ALN +LP DI +R++ EEFHAR+ + K Y Y++ D F+R++ Y
Sbjct: 74 WQ-WSNALNTMLPDDIVIRQVEKKTEEFHARYGVERKEYRYRVLLSKTADVFRRNYVYQY 132
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
PY L +R+A Y++G H+F++F +A + D V+ IF ++ E L G+
Sbjct: 133 PYPLEINSIRKAIPYFIGTHDFTSFCSAKTDK--KDKVRTIFEIELIEQDDELIFRFVGN 190
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
GFLY VR + L+ +G+ L PD I ILA ++R+ K AP HGL L +NYN
Sbjct: 191 GFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGK---MAPGHGLYLWQVNYN 246
>J8A4P2_BACCE (tr|J8A4P2) tRNA pseudouridine synthase A OS=Bacillus cereus
BAG5O-1 GN=truA PE=3 SV=1
Length = 247
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 93/239 (38%), Positives = 135/239 (56%), Gaps = 10/239 (4%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGAS-RTDAGVHAWGQVAHFVTPFNYDK 65
G+Q Q TVQ +E+AL KL + +L V AS RTD+ VHA GQV HF TP + ++
Sbjct: 17 GYQIQPQHRTVQQEIEKALQ---KLHKGELVRVQASGRTDSTVHAKGQVIHFDTPLSLEE 73
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
+ ALN +LP DI +R++ EEFHAR+ + K Y Y++ D F+R++ Y
Sbjct: 74 WQ-WSNALNTMLPDDIVIRQVEKKTEEFHARYGVERKEYRYRVLLSKTADVFRRNYVYQY 132
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
PY L +R+A Y++G H+F++F +A + D V+ IF ++ E L G+
Sbjct: 133 PYPLEINSIRKAIPYFIGTHDFTSFCSAKTDK--KDKVRTIFEIELIEQDDELIFRFVGN 190
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
GFLY VR + L+ +G+ L PD I ILA ++R+ K AP HGL L +NYN
Sbjct: 191 GFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGK---MAPGHGLYLWQVNYN 246
>J8B7I2_BACCE (tr|J8B7I2) tRNA pseudouridine synthase A OS=Bacillus cereus
BAG6X1-2 GN=truA PE=3 SV=1
Length = 247
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 94/243 (38%), Positives = 137/243 (56%), Gaps = 10/243 (4%)
Query: 3 IYTSGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGAS-RTDAGVHAWGQVAHFVTPF 61
I+ G+Q Q TVQ +E+AL KL + +L V AS RTD+ VHA GQV HF TP
Sbjct: 13 IHFCGYQIQPQHRTVQQEIEKALQ---KLHKGELVRVQASGRTDSTVHAKGQVIHFDTPL 69
Query: 62 NYDKLEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHF 121
+ ++ + ALN +LP DI +R++ EEFHAR+ + K Y Y++ D F+R++
Sbjct: 70 SLEEWQ-WSNALNTMLPDDIVIRQVEKKTEEFHARYGVEKKEYRYRVLLSKTADVFRRNY 128
Query: 122 AYHSPYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLE 181
Y PY L +R+A Y++G H+F++F +A + D V+ I+ ++ E L
Sbjct: 129 VYQYPYPLEIDSIRKAIPYFIGTHDFTSFCSAKTDK--KDKVRTIYEIELIEQDDELIFR 186
Query: 182 VEGSGFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSI 241
G+GFLY VR + L+ IG+ L PD I ILA ++R+ K AP HGL L +
Sbjct: 187 FVGNGFLYNMVRIIVGTLLSIGQGKLDPDSIPEILAKQNRQCAGK---MAPGHGLYLWQV 243
Query: 242 NYN 244
NYN
Sbjct: 244 NYN 246
>D3T4M2_THEIA (tr|D3T4M2) tRNA pseudouridine synthase A OS=Thermoanaerobacter
italicus (strain DSM 9252 / Ab9) GN=truA PE=3 SV=1
Length = 240
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 89/237 (37%), Positives = 133/237 (56%), Gaps = 9/237 (3%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDKL 66
GWQ Q + TVQ V+++A+ + T +++ L+GASRTD GVHA QVA+F T
Sbjct: 13 GWQLQKNAITVQEVLQKAIKKVTG---EEVNLIGASRTDTGVHALYQVANFKTNTKMPA- 68
Query: 67 EDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHSP 126
E + ALN +LP DI + + V + FHAR+SAK K Y Y I N P R++ +H
Sbjct: 69 EKLPYALNSVLPDDIVITQAKDVEDSFHARYSAKRKRYKYIILNRKFRMPTMRNYCWHIS 128
Query: 127 YKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGSG 186
Y LN M++AA Y +G H+FSAF + + ++ ++ +++ + +E+E G
Sbjct: 129 YPLNVEKMKKAATYLIGTHDFSAFKASGSSK--TSTIRTVYDLIIEKNEDFINIEIEADG 186
Query: 187 FLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINY 243
FLY VR + L +G + + + HILAS+DR K + APP GL L+ I Y
Sbjct: 187 FLYNMVRIIVGTLSYVGLGKIGENEVYHILASKDR---TKAGITAPPQGLYLIKIIY 240
>C2V623_BACCE (tr|C2V623) tRNA pseudouridine synthase A OS=Bacillus cereus
Rock3-29 GN=truA PE=3 SV=1
Length = 252
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 93/239 (38%), Positives = 135/239 (56%), Gaps = 10/239 (4%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGAS-RTDAGVHAWGQVAHFVTPFNYDK 65
G+Q Q TVQ +E+AL KL + +L V AS RTD+ VHA GQV HF TP + ++
Sbjct: 22 GYQIQPQHRTVQQEIEKALQ---KLHKGELVRVQASGRTDSTVHAKGQVIHFDTPLSLEE 78
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
+ ALN +LP DI +R++ EEFHAR+ + K Y Y++ D F+R++ Y
Sbjct: 79 WQ-WSNALNTMLPDDIVIRQVEKKTEEFHARYGVERKEYRYRVLLSKTADVFRRNYVYQY 137
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
PY L +R+A Y++G H+F++F +A + D V+ IF ++ E L G+
Sbjct: 138 PYPLEINSIRKAIPYFIGTHDFTSFCSAKTDK--KDKVRTIFEIELIEQDDELIFRFVGN 195
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
GFLY VR + L+ +G+ L PD I ILA ++R+ K AP HGL L +NYN
Sbjct: 196 GFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGK---MAPGHGLYLWQVNYN 251
>C2UPQ3_BACCE (tr|C2UPQ3) tRNA pseudouridine synthase A OS=Bacillus cereus
Rock3-28 GN=truA PE=3 SV=1
Length = 252
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 93/239 (38%), Positives = 135/239 (56%), Gaps = 10/239 (4%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGAS-RTDAGVHAWGQVAHFVTPFNYDK 65
G+Q Q TVQ +E+AL KL + +L V AS RTD+ VHA GQV HF TP + ++
Sbjct: 22 GYQIQPQHRTVQQEIEKALQ---KLHKGELVRVQASGRTDSTVHAKGQVIHFDTPLSLEE 78
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
+ ALN +LP DI +R++ EEFHAR+ + K Y Y++ D F+R++ Y
Sbjct: 79 WQ-WSNALNTMLPDDIVIRQVEKKTEEFHARYGVERKEYRYRVLLSKTADVFRRNYVYQY 137
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
PY L +R+A Y++G H+F++F +A + D V+ IF ++ E L G+
Sbjct: 138 PYPLEINSIRKAIPYFIGTHDFTSFCSAKTDK--KDKVRTIFEIELIEQDDELIFRFVGN 195
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
GFLY VR + L+ +G+ L PD I ILA ++R+ K AP HGL L +NYN
Sbjct: 196 GFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGK---MAPGHGLYLWQVNYN 251
>C2TRJ4_BACCE (tr|C2TRJ4) tRNA pseudouridine synthase A OS=Bacillus cereus
Rock1-3 GN=truA PE=3 SV=1
Length = 252
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 93/239 (38%), Positives = 135/239 (56%), Gaps = 10/239 (4%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGAS-RTDAGVHAWGQVAHFVTPFNYDK 65
G+Q Q TVQ +E+AL KL + +L V AS RTD+ VHA GQV HF TP + ++
Sbjct: 22 GYQIQPQHRTVQQEIEKALQ---KLHKGELVRVQASGRTDSTVHAKGQVIHFDTPLSLEE 78
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
+ ALN +LP DI +R++ EEFHAR+ + K Y Y++ D F+R++ Y
Sbjct: 79 WQ-WSNALNTMLPDDIVIRQVEKKTEEFHARYGVERKEYRYRVLLSKTADVFRRNYVYQY 137
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
PY L +R+A Y++G H+F++F +A + D V+ IF ++ E L G+
Sbjct: 138 PYPLEINSIRKAIPYFIGTHDFTSFCSAKTDK--KDKVRTIFEIELIEQDDELIFRFVGN 195
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYN 244
GFLY VR + L+ +G+ L PD I ILA ++R+ K AP HGL L +NYN
Sbjct: 196 GFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGK---MAPGHGLYLWQVNYN 251
>E6UT09_CLOTL (tr|E6UT09) tRNA pseudouridine synthase A OS=Clostridium
thermocellum (strain DSM 1313 / LMG 6656 / LQ8) GN=truA
PE=3 SV=1
Length = 244
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 94/244 (38%), Positives = 129/244 (52%), Gaps = 23/244 (9%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTP------ 60
GWQ Q + TVQ +ERA+ L + + L+GASRTD GVHA GQVA+F+T
Sbjct: 17 GWQKQKNAKTVQDTIERAIK---GLTGEKVDLIGASRTDFGVHALGQVANFITNSGIPGD 73
Query: 61 -FNYDKLEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQR 119
F+Y ALN +LP DI ++E V +FHAR+ AK K Y Y IYN R
Sbjct: 74 RFSY--------ALNRMLPDDIVIKESQEVDMDFHARYKAKGKRYRYLIYNSQFPSALLR 125
Query: 120 HFAYHSPYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQ 179
H YH +KL+ M+ AA Y++G H+FSAF S V+ I ++ +++
Sbjct: 126 HRTYHVSHKLDFESMQRAASYFLGTHDFSAF--RSSGSSAKTSVRTITDVSLEREDKIVK 183
Query: 180 LEVEGSGFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLV 239
E+ G GFLY VR + L+++G + D I I+ SR RK + AP GL LV
Sbjct: 184 FEIAGDGFLYNMVRIIVGTLMEVGIGKIRADEIPQIIESRKRKRAGRT---APAEGLYLV 240
Query: 240 SINY 243
+ Y
Sbjct: 241 EVYY 244
>J9XKZ0_CHLPS (tr|J9XKZ0) tRNA pseudouridine synthase A OS=Chlamydia psittaci NJ1
GN=truA PE=3 SV=1
Length = 268
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 92/257 (35%), Positives = 146/257 (56%), Gaps = 11/257 (4%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFN--Y 63
+GWQ Q + +VQ V+E +LT K+ K + + + RTDAGVHA+GQVAHF P + +
Sbjct: 16 AGWQRQPNDLSVQEVIENSLT---KVVGKRIHVTSSGRTDAGVHAFGQVAHFPQPDHPRF 72
Query: 64 DKLEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAY 123
+ I LN LLP DI +R++ + FH+RFSA +K Y Y + P++R+F+Y
Sbjct: 73 SQASGIKKMLNALLPKDIVIRDVVLGDDIFHSRFSAIAKEYRYLLTRSPKPLPWERYFSY 132
Query: 124 HSPYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVE 183
+ + L + +M+E A+Y +G H+F++FAN H ++ +F D+ + G + + +
Sbjct: 133 YPRHHLRTDLMQEGAKYLIGTHDFASFAN--HGRDYTSTIRTLFNLDIVDNGETVTIICK 190
Query: 184 GSGFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINY 243
G+GFLY+ VRN+ L+ I + PP+ IQ IL ++R+ K AP + L L + Y
Sbjct: 191 GNGFLYKMVRNIVGSLLDISRGKYPPEYIQEILIQKNRR---KGPPAAPSYALSLYHVCY 247
Query: 244 NES-HLLPPPGCPANSF 259
+ H P C NS
Sbjct: 248 PKPYHWFCTPECNINSL 264
>H8ERP8_CLOTM (tr|H8ERP8) tRNA pseudouridine synthase A OS=Clostridium
thermocellum YS GN=truA PE=3 SV=1
Length = 244
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 94/244 (38%), Positives = 129/244 (52%), Gaps = 23/244 (9%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTP------ 60
GWQ Q + TVQ +ERA+ L + + L+GASRTD GVHA GQVA+F+T
Sbjct: 17 GWQKQKNAKTVQDTIERAIK---GLTGEKVDLIGASRTDFGVHALGQVANFITNSGIPGD 73
Query: 61 -FNYDKLEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQR 119
F+Y ALN +LP DI ++E V +FHAR+ AK K Y Y IYN R
Sbjct: 74 RFSY--------ALNRMLPDDIVIKESQEVDMDFHARYKAKGKRYRYLIYNSQFPSALLR 125
Query: 120 HFAYHSPYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQ 179
H YH +KL+ M+ AA Y++G H+FSAF S V+ I ++ +++
Sbjct: 126 HRTYHVSHKLDFESMQRAASYFLGTHDFSAF--RSSGSSAKTSVRTITDVSLEREDKIVK 183
Query: 180 LEVEGSGFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLV 239
E+ G GFLY VR + L+++G + D I I+ SR RK + AP GL LV
Sbjct: 184 FEIAGDGFLYNMVRIIVGTLMEVGIGKIRADEIPQIIESRKRKRAGRT---APAEGLYLV 240
Query: 240 SINY 243
+ Y
Sbjct: 241 EVYY 244
>H8EG60_CLOTM (tr|H8EG60) tRNA pseudouridine synthase A OS=Clostridium
thermocellum AD2 GN=truA PE=3 SV=1
Length = 244
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 94/244 (38%), Positives = 129/244 (52%), Gaps = 23/244 (9%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTP------ 60
GWQ Q + TVQ +ERA+ L + + L+GASRTD GVHA GQVA+F+T
Sbjct: 17 GWQKQKNAKTVQDTIERAIK---GLTGEKVDLIGASRTDFGVHALGQVANFITNSGIPGD 73
Query: 61 -FNYDKLEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQR 119
F+Y ALN +LP DI ++E V +FHAR+ AK K Y Y IYN R
Sbjct: 74 RFSY--------ALNRMLPDDIVIKESQEVDMDFHARYKAKGKRYRYLIYNSQFPSALLR 125
Query: 120 HFAYHSPYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQ 179
H YH +KL+ M+ AA Y++G H+FSAF S V+ I ++ +++
Sbjct: 126 HRTYHVSHKLDFESMQRAASYFLGTHDFSAF--RSSGSSAKTSVRTITDVSLEREDKIVK 183
Query: 180 LEVEGSGFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLV 239
E+ G GFLY VR + L+++G + D I I+ SR RK + AP GL LV
Sbjct: 184 FEIAGDGFLYNMVRIIVGTLMEVGIGKIRADEIPQIIESRKRKRAGRT---APAEGLYLV 240
Query: 240 SINY 243
+ Y
Sbjct: 241 EVYY 244
>D1NQZ9_CLOTM (tr|D1NQZ9) tRNA pseudouridine synthase A OS=Clostridium
thermocellum JW20 GN=truA PE=3 SV=1
Length = 244
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 94/244 (38%), Positives = 129/244 (52%), Gaps = 23/244 (9%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTP------ 60
GWQ Q + TVQ +ERA+ L + + L+GASRTD GVHA GQVA+F+T
Sbjct: 17 GWQKQKNAKTVQDTIERAIK---GLTGEKVDLIGASRTDFGVHALGQVANFITNSGIPGD 73
Query: 61 -FNYDKLEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQR 119
F+Y ALN +LP DI ++E V +FHAR+ AK K Y Y IYN R
Sbjct: 74 RFSY--------ALNRMLPDDIVIKESQEVDMDFHARYKAKGKRYRYLIYNSQFPSALLR 125
Query: 120 HFAYHSPYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQ 179
H YH +KL+ M+ AA Y++G H+FSAF S V+ I ++ +++
Sbjct: 126 HRTYHVSHKLDFESMQRAASYFLGTHDFSAF--RSSGSSAKTSVRTITDVSLEREDKIVK 183
Query: 180 LEVEGSGFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLV 239
E+ G GFLY VR + L+++G + D I I+ SR RK + AP GL LV
Sbjct: 184 FEIAGDGFLYNMVRIIVGTLMEVGIGKIRADEIPQIIESRKRKRAGRT---APAEGLYLV 240
Query: 240 SINY 243
+ Y
Sbjct: 241 EVYY 244
>C7HHF2_CLOTM (tr|C7HHF2) tRNA pseudouridine synthase A OS=Clostridium
thermocellum DSM 2360 GN=truA PE=3 SV=1
Length = 244
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 94/244 (38%), Positives = 129/244 (52%), Gaps = 23/244 (9%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTP------ 60
GWQ Q + TVQ +ERA+ L + + L+GASRTD GVHA GQVA+F+T
Sbjct: 17 GWQKQKNAKTVQDTIERAIK---GLTGEKVDLIGASRTDFGVHALGQVANFITNSGIPGD 73
Query: 61 -FNYDKLEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQR 119
F+Y ALN +LP DI ++E V +FHAR+ AK K Y Y IYN R
Sbjct: 74 RFSY--------ALNRMLPDDIVIKESQEVDMDFHARYKAKGKRYRYLIYNSQFPSALLR 125
Query: 120 HFAYHSPYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQ 179
H YH +KL+ M+ AA Y++G H+FSAF S V+ I ++ +++
Sbjct: 126 HRTYHVSHKLDFESMQRAASYFLGTHDFSAF--RSSGSSAKTSVRTITDVSLEREDKIVK 183
Query: 180 LEVEGSGFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLV 239
E+ G GFLY VR + L+++G + D I I+ SR RK + AP GL LV
Sbjct: 184 FEIAGDGFLYNMVRIIVGTLMEVGIGKIRADEIPQIIESRKRKRAGRT---APAEGLYLV 240
Query: 240 SINY 243
+ Y
Sbjct: 241 EVYY 244
>I3E0G6_BACMT (tr|I3E0G6) tRNA pseudouridine synthase A OS=Bacillus methanolicus
PB1 GN=truA PE=3 SV=1
Length = 245
Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 94/238 (39%), Positives = 130/238 (54%), Gaps = 8/238 (3%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDK 65
SG+Q Q T+Q +E AL++ K +R + + + RTDAGVHA GQV HF +
Sbjct: 16 SGYQIQPGKRTIQGEIEVALSKLHKGKR--IKISASGRTDAGVHAKGQVIHFDSALAIST 73
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
E ALN +LP DI V + FHARF A K Y Y ++ DPF+RH+AY
Sbjct: 74 -EKWEIALNSILPDDIAVIRVEKAAPGFHARFDAFGKEYRYFVHLSPKRDPFKRHYAYQF 132
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
PY L+ A M+EA +Y +G H+F++F +A + D V+ I + D + G LL G+
Sbjct: 133 PYPLDYAAMKEALKYLIGTHDFTSFCSAKTE--IEDKVRTIEKIDFFQEGDLLVFRFIGN 190
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINY 243
GFLY VR + L+++G + PD I IL +DRK K AP HGL L + Y
Sbjct: 191 GFLYNMVRILTGTLLEVGSGSRSPDSIPDILEKKDRKFAGKT---APAHGLYLWRVFY 245
>C3BFD0_9BACI (tr|C3BFD0) tRNA pseudouridine synthase A OS=Bacillus
pseudomycoides DSM 12442 GN=truA PE=3 SV=1
Length = 245
Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 86/238 (36%), Positives = 137/238 (57%), Gaps = 10/238 (4%)
Query: 7 GWQ-YQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDK 65
GWQ + T+Q +E L+ T +++ ++G SRTDAGVHA QVA+F N +
Sbjct: 17 GWQRLGNNDNTIQGKIESVLSEMTG---REIEIIGCSRTDAGVHALHQVANFKIDENLPE 73
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
L+ + LN LP+DI + ++ + E FHAR+++K+K Y YKI+N+ +PF R ++ H
Sbjct: 74 LK-VKKYLNQYLPNDISITDVELISERFHARYNSKAKTYLYKIWNEEHTNPFMRKYSMHV 132
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
KLN M++AAQY +G H+F+AF+NA V+ I+ DV E +Q+ V G+
Sbjct: 133 GKKLNIENMQKAAQYLIGSHDFTAFSNAKSKK--KSMVREIYMLDVVESEGFIQIRVNGN 190
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINY 243
GFL+ VR + LV++G L ++I IL ++ R ++ A GL L +++
Sbjct: 191 GFLHNMVRKIVGALVEVGLGQLDAEVIPQILEAKQRNQI---NCLADASGLYLEKVDF 245