Miyakogusa Predicted Gene
- Lj3g3v3639960.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v3639960.1 Non Chatacterized Hit- tr|I1LP24|I1LP24_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.13503
PE,88.43,0,sigma70-ECF: RNA polymerase sigma factor, sigma-70,RNA
polymerase sigma-70; no description,NULL; no ,CUFF.46126.1
(337 letters)
Database: trembl
41,451,118 sequences; 13,208,986,710 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
I1LP24_SOYBN (tr|I1LP24) Uncharacterized protein OS=Glycine max ... 623 e-176
I1L5H1_SOYBN (tr|I1L5H1) Uncharacterized protein OS=Glycine max ... 617 e-174
B9SDF8_RICCO (tr|B9SDF8) RNA polymerase sigma factor rpoD, putat... 593 e-167
M5X2A7_PRUPE (tr|M5X2A7) Uncharacterized protein OS=Prunus persi... 592 e-167
B9IPY1_POPTR (tr|B9IPY1) Predicted protein OS=Populus trichocarp... 579 e-163
Q9SLX4_TOBAC (tr|Q9SLX4) Sigma factor OS=Nicotiana tabacum GN=si... 567 e-159
M4CWB6_BRARP (tr|M4CWB6) Uncharacterized protein OS=Brassica rap... 567 e-159
Q9SLX3_TOBAC (tr|Q9SLX3) Sigma factor OS=Nicotiana tabacum GN=si... 566 e-159
R0GH75_9BRAS (tr|R0GH75) Uncharacterized protein OS=Capsella rub... 565 e-158
F6HE86_VITVI (tr|F6HE86) Putative uncharacterized protein OS=Vit... 564 e-158
K4BJE9_SOLLC (tr|K4BJE9) Uncharacterized protein OS=Solanum lyco... 560 e-157
B9I6T5_POPTR (tr|B9I6T5) Predicted protein OS=Populus trichocarp... 558 e-157
O49935_SINAL (tr|O49935) Sig1 protein OS=Sinapis alba GN=Sig1 PE... 558 e-157
D7KZ14_ARALL (tr|D7KZ14) RNA polymerase sigma subunit 1 OS=Arabi... 555 e-156
M1CIG4_SOLTU (tr|M1CIG4) Uncharacterized protein OS=Solanum tube... 555 e-155
I1L5H2_SOYBN (tr|I1L5H2) Uncharacterized protein OS=Glycine max ... 551 e-154
M1CKN6_SOLTU (tr|M1CKN6) Uncharacterized protein OS=Solanum tube... 544 e-152
K4C8Z1_SOLLC (tr|K4C8Z1) Uncharacterized protein OS=Solanum lyco... 540 e-151
M1CIG2_SOLTU (tr|M1CIG2) Uncharacterized protein OS=Solanum tube... 514 e-143
M0RQD1_MUSAM (tr|M0RQD1) Uncharacterized protein OS=Musa acumina... 513 e-143
M0RYS9_MUSAM (tr|M0RYS9) Uncharacterized protein OS=Musa acumina... 496 e-138
O48655_ORYSJ (tr|O48655) Plastid RNA polymerase sigma factor OS=... 463 e-128
Q0J7T6_ORYSJ (tr|Q0J7T6) Os08g0163400 protein OS=Oryza sativa su... 463 e-128
I1QFY1_ORYGL (tr|I1QFY1) Uncharacterized protein OS=Oryza glaber... 463 e-128
A3BPX7_ORYSJ (tr|A3BPX7) Putative uncharacterized protein OS=Ory... 462 e-128
A2YRJ0_ORYSI (tr|A2YRJ0) Putative uncharacterized protein OS=Ory... 462 e-127
Q7EY08_ORYSJ (tr|Q7EY08) Putative plastid RNA polymerase sigma f... 461 e-127
Q7EY07_ORYSJ (tr|Q7EY07) Putative plastid RNA polymerase sigma f... 461 e-127
K3YH90_SETIT (tr|K3YH90) Uncharacterized protein OS=Setaria ital... 459 e-127
C5YHG2_SORBI (tr|C5YHG2) Putative uncharacterized protein Sb07g0... 454 e-125
K7UB44_MAIZE (tr|K7UB44) RNA polymerase sigma factor 2 OS=Zea ma... 454 e-125
J3MQN6_ORYBR (tr|J3MQN6) Uncharacterized protein OS=Oryza brachy... 454 e-125
M7Y829_TRIUA (tr|M7Y829) RNA polymerase sigma factor rpoD OS=Tri... 453 e-125
B4FP19_MAIZE (tr|B4FP19) RNA polymerase sigma factor 1 isoform 1... 453 e-125
O24348_SORBI (tr|O24348) Plastid RNA polymerase sigma factor OS=... 452 e-125
Q9ZTI3_MAIZE (tr|Q9ZTI3) RNA polymerase sigma factor 1 (Fragment... 451 e-124
M1CIG3_SOLTU (tr|M1CIG3) Uncharacterized protein OS=Solanum tube... 450 e-124
I1I198_BRADI (tr|I1I198) Uncharacterized protein OS=Brachypodium... 449 e-124
Q9ZTI2_MAIZE (tr|Q9ZTI2) RNA polymerase sigma factor 2 (Fragment... 446 e-123
Q9ZP70_WHEAT (tr|Q9ZP70) Chloroplast sigma factor (Fragment) OS=... 445 e-122
F2DWX1_HORVD (tr|F2DWX1) Predicted protein OS=Hordeum vulgare va... 444 e-122
F2DCW4_HORVD (tr|F2DCW4) Predicted protein OS=Hordeum vulgare va... 443 e-122
M8CE31_AEGTA (tr|M8CE31) RNA polymerase sigma factor rpoD OS=Aeg... 406 e-111
R0IAB6_9BRAS (tr|R0IAB6) Uncharacterized protein OS=Capsella rub... 349 7e-94
Q93V67_9BRYO (tr|Q93V67) PpSIG1 OS=Physcomitrella patens GN=Sig1... 260 5e-67
E1C9S7_PHYPA (tr|E1C9S7) Plastid sigma factor SIG1 OS=Physcomitr... 260 5e-67
M1CIG6_SOLTU (tr|M1CIG6) Uncharacterized protein OS=Solanum tube... 257 4e-66
K0ITD8_MARPO (tr|K0ITD8) Plastid RNA polymerase sigma factor 1 O... 245 1e-62
A5GQ42_SYNR3 (tr|A5GQ42) RNA polymerase sigma factor OS=Synechoc... 187 6e-45
F2HHX7_9CRYP (tr|F2HHX7) RNA-polymerase sigma factor OS=Cryptomo... 185 2e-44
Q98RZ3_GUITH (tr|Q98RZ3) RNA-polymerase sigma factor OS=Guillard... 184 3e-44
A9BK56_HEMAN (tr|A9BK56) RpoD OS=Hemiselmis andersenii GN=HAN_1g... 184 3e-44
J7G2H9_9CRYP (tr|J7G2H9) RNA-polymerase sigma factor OS=Chroomon... 184 5e-44
Q7NEW6_GLOVI (tr|Q7NEW6) RNA polymerase sigma factor OS=Gloeobac... 184 6e-44
K9YFR5_HALP7 (tr|K9YFR5) RNA polymerase sigma factor OS=Halothec... 183 1e-43
Q8S9D0_GUITH (tr|Q8S9D0) RNA polymerase sigma factor OS=Guillard... 182 1e-43
I4I200_MICAE (tr|I4I200) RNA polymerase sigma factor rpoD3 OS=Mi... 181 4e-43
K0ISZ8_MARPO (tr|K0ISZ8) Plastid RNA polymerase sigma factor 2 O... 180 6e-43
B8HU39_CYAP4 (tr|B8HU39) RNA polymerase sigma factor OS=Cyanothe... 180 6e-43
E0UIU1_CYAP2 (tr|E0UIU1) RNA polymerase, sigma 70 subunit, RpoD ... 180 7e-43
L8NM63_MICAE (tr|L8NM63) RNA polymerase sigma factor rpoD2 OS=Mi... 179 9e-43
A8YAB5_MICAE (tr|A8YAB5) Genome sequencing data, contig C249 OS=... 179 9e-43
K9XV83_STAC7 (tr|K9XV83) RNA polymerase, sigma 70 subunit, RpoD ... 179 9e-43
I4H5M1_MICAE (tr|I4H5M1) RNA polymerase sigma factor rpoD3 OS=Mi... 179 1e-42
L7E3E5_MICAE (tr|L7E3E5) RNA polymerase sigma factor OS=Microcys... 179 1e-42
I4GLZ5_MICAE (tr|I4GLZ5) RNA polymerase sigma factor rpoD3 OS=Mi... 179 1e-42
I4FIK9_MICAE (tr|I4FIK9) RNA polymerase sigma factor rpoD3 OS=Mi... 179 1e-42
I4ISK0_MICAE (tr|I4ISK0) RNA polymerase sigma factor rpoD3 OS=Mi... 179 2e-42
I4G0I4_MICAE (tr|I4G0I4) RNA polymerase sigma factor rpoD3 OS=Mi... 178 2e-42
B7KAB6_CYAP7 (tr|B7KAB6) RNA polymerase, sigma 70 subunit, RpoD ... 178 3e-42
Q2JNL1_SYNJB (tr|Q2JNL1) RNA polymerase sigma factor OS=Synechoc... 178 3e-42
B0JTP4_MICAN (tr|B0JTP4) Group 2 RNA polymerase sigma factor OS=... 178 3e-42
L8LWE0_9CYAN (tr|L8LWE0) RNA polymerase sigma factor, cyanobacte... 178 3e-42
I4HQ77_MICAE (tr|I4HQ77) RNA polymerase sigma factor rpoD3 OS=Mi... 177 4e-42
I4FRP5_MICAE (tr|I4FRP5) RNA polymerase sigma factor rpoD3 OS=Mi... 177 4e-42
B4WMN7_9SYNE (tr|B4WMN7) RNA polymerase sigma factor OS=Synechoc... 177 4e-42
M0TIC0_MUSAM (tr|M0TIC0) Uncharacterized protein OS=Musa acumina... 177 4e-42
B1X0Q3_CYAA5 (tr|B1X0Q3) Group 2 sigma-70 RNA polymerase sigma f... 177 4e-42
G6GT77_9CHRO (tr|G6GT77) RNA polymerase, sigma 70 subunit, RpoD ... 177 4e-42
I4GS23_MICAE (tr|I4GS23) RNA polymerase sigma factor rpoD3 OS=Mi... 177 5e-42
B0C890_ACAM1 (tr|B0C890) RNA polymerase sigma-70 factor OS=Acary... 177 5e-42
I4IAS0_9CHRO (tr|I4IAS0) RNA polymerase sigma factor rpoD3 OS=Mi... 176 8e-42
K9XHA2_9CHRO (tr|K9XHA2) RNA polymerase sigma factor OS=Gloeocap... 176 9e-42
K9X1I3_9NOST (tr|K9X1I3) RNA polymerase sigma factor OS=Cylindro... 176 1e-41
B1X4M1_PAUCH (tr|B1X4M1) Type II alternative RNA polymerase sigm... 176 1e-41
Q2JRK5_SYNJA (tr|Q2JRK5) RNA polymerase sigma factor OS=Synechoc... 176 1e-41
A0YTZ3_LYNSP (tr|A0YTZ3) RNA polymerase sigma factor OS=Lyngbya ... 176 1e-41
K9V798_9CYAN (tr|K9V798) RNA polymerase, sigma 70 subunit, RpoD ... 176 1e-41
K9RSJ7_SYNP3 (tr|K9RSJ7) RNA polymerase sigma factor OS=Synechoc... 176 1e-41
K9TSM8_9CYAN (tr|K9TSM8) RNA polymerase sigma factor OS=Chroococ... 175 2e-41
K9VNL0_9CYAN (tr|K9VNL0) RNA polymerase sigma factor OS=Oscillat... 175 2e-41
D3ER12_UCYNA (tr|D3ER12) RNA polymerase sigma factor, sigma-70 f... 175 2e-41
A3ITT4_9CHRO (tr|A3ITT4) RNA polymerase sigma factor SigD OS=Cya... 175 2e-41
Q3MBX2_ANAVT (tr|Q3MBX2) Sigma 28 (Flagella/Sporulation) OS=Anab... 175 2e-41
C7QVB1_CYAP0 (tr|C7QVB1) RNA polymerase, sigma 70 subunit, RpoD ... 175 2e-41
B7JX54_CYAP8 (tr|B7JX54) RNA polymerase, sigma 70 subunit, RpoD ... 175 2e-41
D7UB90_VITVI (tr|D7UB90) Putative uncharacterized protein OS=Vit... 175 2e-41
I0KYV9_9ACTO (tr|I0KYV9) RNA polymerase sigma factor OS=Micromon... 175 2e-41
Q4C529_CROWT (tr|Q4C529) Sigma-70 region 3:Sigma-70 region 2:Sig... 175 3e-41
B1XMU3_SYNP2 (tr|B1XMU3) RNA polymerase sigma factor OS=Synechoc... 175 3e-41
K9YRT3_DACSA (tr|K9YRT3) RNA polymerase sigma factor OS=Dactyloc... 175 3e-41
K9PWX1_9CYAN (tr|K9PWX1) RNA polymerase sigma factor OS=Leptolyn... 175 3e-41
F4XPJ0_9CYAN (tr|F4XPJ0) RNA polymerase sigma factor OS=Moorea p... 174 3e-41
G5J3J9_CROWT (tr|G5J3J9) Cyanobacteria-specific RpoD-like sigma ... 174 3e-41
Q3MDA3_ANAVT (tr|Q3MDA3) RNA polymerase sigma factor OS=Anabaena... 174 3e-41
R7QJX2_CHOCR (tr|R7QJX2) Stackhouse genomic scaffold, scaffold_3... 174 3e-41
Q9L4T2_NOSP7 (tr|Q9L4T2) RNA polymerase sigma factor OS=Nostoc p... 174 3e-41
D7E0T9_NOSA0 (tr|D7E0T9) RNA polymerase, sigma 70 subunit, RpoD ... 174 3e-41
B2JB50_NOSP7 (tr|B2JB50) RNA polymerase, sigma 70 subunit, RpoD ... 174 4e-41
Q39515_CYACA (tr|Q39515) Chloroplast RNA polymerase sigma subuni... 174 4e-41
Q3ALS7_SYNSC (tr|Q3ALS7) RNA polymerase sigma factor OS=Synechoc... 174 4e-41
K7W4G2_9NOST (tr|K7W4G2) RNA polymerase sigma factor OS=Anabaena... 174 4e-41
D0CLH5_9SYNE (tr|D0CLH5) RNA polymerase sigma factor OS=Synechoc... 174 4e-41
K9XY46_STAC7 (tr|K9XY46) RNA polymerase sigma factor OS=Stanieri... 174 4e-41
K9Q8G4_9NOSO (tr|K9Q8G4) RNA polymerase sigma factor OS=Nostoc s... 174 4e-41
M7E3T8_9STRE (tr|M7E3T8) RNA polymerase sigma factor RpoD OS=Str... 174 4e-41
K9WH45_9CYAN (tr|K9WH45) RNA polymerase sigma factor OS=Microcol... 174 4e-41
B8LQB0_PICSI (tr|B8LQB0) Putative uncharacterized protein OS=Pic... 174 4e-41
K6E178_SPIPL (tr|K6E178) RNA polymerase sigma factor SigD OS=Art... 174 5e-41
K1VW29_SPIPL (tr|K1VW29) RNA polymerase sigma 70 subunit RpoD fa... 174 5e-41
B5VZJ5_SPIMA (tr|B5VZJ5) RNA polymerase, sigma 70 subunit, RpoD ... 174 5e-41
B8LLW6_PICSI (tr|B8LLW6) Putative uncharacterized protein OS=Pic... 174 5e-41
E3CLD6_STRDO (tr|E3CLD6) RNA polymerase sigma factor OS=Streptoc... 174 5e-41
A9RTR4_PHYPA (tr|A9RTR4) Uncharacterized protein OS=Physcomitrel... 174 5e-41
K9YIA7_CYASC (tr|K9YIA7) RNA polymerase, sigma 70 subunit, RpoD ... 174 5e-41
M1WSP5_9NOST (tr|M1WSP5) RNA polymerase sigma factor OS=Richelia... 174 6e-41
K8GTQ7_9CYAN (tr|K8GTQ7) RNA polymerase sigma factor OS=Oscillat... 174 6e-41
M0TES6_MUSAM (tr|M0TES6) Uncharacterized protein OS=Musa acumina... 174 6e-41
E8R2V4_ISOPI (tr|E8R2V4) RNA polymerase sigma factor OS=Isosphae... 173 7e-41
G6FNJ2_9CYAN (tr|G6FNJ2) RNA polymerase sigma factor OS=Fischere... 173 7e-41
K9TYL7_9CYAN (tr|K9TYL7) RNA polymerase sigma factor OS=Chroococ... 173 7e-41
Q05YJ7_9SYNE (tr|Q05YJ7) RNA polymerase sigma factor OS=Synechoc... 173 7e-41
K9QTZ2_NOSS7 (tr|K9QTZ2) RNA polymerase sigma factor OS=Nostoc s... 173 7e-41
E0UE67_CYAP2 (tr|E0UE67) RNA polymerase sigma factor OS=Cyanothe... 173 7e-41
G5JTR2_STRCG (tr|G5JTR2) RNA polymerase sigma factor OS=Streptoc... 173 7e-41
Q7U5C4_SYNPX (tr|Q7U5C4) RNA polymerase sigma factor OS=Synechoc... 173 7e-41
Q3ANG0_SYNSC (tr|Q3ANG0) RNA polymerase sigma factor OS=Synechoc... 173 7e-41
K9PJQ4_9CYAN (tr|K9PJQ4) RNA polymerase sigma factor OS=Calothri... 173 7e-41
Q3AWQ6_SYNS9 (tr|Q3AWQ6) RNA polymerase sigma factor OS=Synechoc... 173 8e-41
F5UJI7_9CYAN (tr|F5UJI7) RNA polymerase sigma factor OS=Microcol... 173 9e-41
H1WGX8_9CYAN (tr|H1WGX8) Group 2 RNA polymerase sigma factor Sig... 173 9e-41
B9SDA3_RICCO (tr|B9SDA3) RNA polymerase sigma factor rpoD1, puta... 173 9e-41
K9V2E9_9CYAN (tr|K9V2E9) RNA polymerase sigma factor OS=Calothri... 173 9e-41
K9W354_9CYAN (tr|K9W354) RNA polymerase sigma factor OS=Crinaliu... 173 9e-41
K9TEU2_9CYAN (tr|K9TEU2) RNA polymerase sigma factor, cyanobacte... 173 1e-40
L8LPU5_9CHRO (tr|L8LPU5) RNA polymerase sigma factor OS=Gloeocap... 172 1e-40
R5UVK4_9FIRM (tr|R5UVK4) RNA polymerase sigma factor OS=Roseburi... 172 1e-40
K9QHM1_9NOSO (tr|K9QHM1) RNA polymerase, sigma 70 subunit, RpoD ... 172 1e-40
B4W0Y8_9CYAN (tr|B4W0Y8) RNA polymerase sigma factor OS=Coleofas... 172 1e-40
A0ZJC3_NODSP (tr|A0ZJC3) RNA polymerase sigma factor OS=Nodulari... 172 1e-40
G6FUP1_9CYAN (tr|G6FUP1) RNA polymerase sigma factor OS=Fischere... 172 1e-40
K9UM88_9CHRO (tr|K9UM88) RNA polymerase sigma factor OS=Chamaesi... 172 1e-40
Q46GS6_PROMT (tr|Q46GS6) RNA polymerase sigma factor OS=Prochlor... 172 2e-40
A2C0V5_PROM1 (tr|A2C0V5) RNA polymerase sigma factor OS=Prochlor... 172 2e-40
K9YEA1_HALP7 (tr|K9YEA1) RNA polymerase sigma factor OS=Halothec... 172 2e-40
A2C7M0_PROM3 (tr|A2C7M0) RNA polymerase sigma factor OS=Prochlor... 172 2e-40
K9VRX0_9CYAN (tr|K9VRX0) RNA polymerase sigma factor OS=Oscillat... 172 2e-40
K9PYY3_9CYAN (tr|K9PYY3) RNA polymerase, sigma 70 subunit, RpoD ... 172 2e-40
Q3CZ52_STRAG (tr|Q3CZ52) RNA polymerase sigma factor OS=Streptoc... 172 2e-40
M1YC18_STRAG (tr|M1YC18) RNA polymerase sigma factor OS=Streptoc... 172 2e-40
Q9KHE8_NOSS1 (tr|Q9KHE8) Group 2 sigma 70-type sigma factor D OS... 172 2e-40
G6FRT8_9CYAN (tr|G6FRT8) RNA polymerase, sigma 70 subunit, RpoD ... 172 2e-40
P96034_SYNSP (tr|P96034) Sigma factor OS=Synechococcus sp. GN=si... 172 2e-40
Q5N3S3_SYNP6 (tr|Q5N3S3) Group2 RNA polymerase sigma factor RpoD... 172 2e-40
B2J979_NOSP7 (tr|B2J979) RNA polymerase, sigma 70 subunit, RpoD ... 172 2e-40
E8JP19_STREI (tr|E8JP19) RNA polymerase sigma factor OS=Streptoc... 172 2e-40
Q2JIA4_SYNJB (tr|Q2JIA4) RNA polymerase sigma factor OS=Synechoc... 172 2e-40
K9TBA0_9CYAN (tr|K9TBA0) RNA polymerase sigma factor, cyanobacte... 172 2e-40
Q8E4A5_STRA3 (tr|Q8E4A5) RNA polymerase sigma factor OS=Streptoc... 172 2e-40
Q8DYP8_STRA5 (tr|Q8DYP8) RNA polymerase sigma factor OS=Streptoc... 172 2e-40
Q3K084_STRA1 (tr|Q3K084) RNA polymerase sigma factor OS=Streptoc... 172 2e-40
J9YT78_STRA2 (tr|J9YT78) RNA polymerase sigma factor OS=Streptoc... 172 2e-40
R4ZV95_STRAG (tr|R4ZV95) RNA polymerase sigma factor RpoD OS=Str... 172 2e-40
R4ZT55_STRAG (tr|R4ZT55) RNA polymerase sigma factor RpoD OS=Str... 172 2e-40
R4ZN32_STRAG (tr|R4ZN32) RNA polymerase sigma factor RpoD OS=Str... 172 2e-40
Q3DIM8_STRAG (tr|Q3DIM8) RNA polymerase sigma factor OS=Streptoc... 172 2e-40
Q3DC03_STRAG (tr|Q3DC03) RNA polymerase sigma factor OS=Streptoc... 172 2e-40
Q3D699_STRAG (tr|Q3D699) RNA polymerase sigma factor OS=Streptoc... 172 2e-40
M1XU13_STRAG (tr|M1XU13) RNA polymerase sigma factor OS=Streptoc... 172 2e-40
J8SZK7_STRAG (tr|J8SZK7) RNA polymerase sigma factor OS=Streptoc... 172 2e-40
I5BMJ8_STRAG (tr|I5BMJ8) RNA polymerase sigma factor OS=Streptoc... 172 2e-40
F8Y1T2_STRAG (tr|F8Y1T2) RNA polymerase sigma factor OS=Streptoc... 172 2e-40
K9Z739_CYAAP (tr|K9Z739) RNA polymerase, sigma 70 subunit, RpoD ... 171 2e-40
K9YNZ9_CYASC (tr|K9YNZ9) RNA polymerase sigma factor OS=Cyanobac... 171 2e-40
Q3B0L4_SYNS9 (tr|Q3B0L4) RNA polymerase sigma factor OS=Synechoc... 171 2e-40
K9QH57_9NOSO (tr|K9QH57) RNA polymerase sigma factor OS=Nostoc s... 171 2e-40
Q062S3_9SYNE (tr|Q062S3) RNA polymerase sigma factor OS=Synechoc... 171 3e-40
E7S3E6_STRAG (tr|E7S3E6) RNA polymerase sigma factor OS=Streptoc... 171 3e-40
F5UG89_9CYAN (tr|F5UG89) RNA polymerase sigma factor OS=Microcol... 171 3e-40
K9TM07_9CYAN (tr|K9TM07) RNA polymerase sigma factor OS=Oscillat... 171 3e-40
K7W742_9NOST (tr|K7W742) RNA polymerase sigma factor OS=Anabaena... 171 3e-40
B1X5Q2_PAUCH (tr|B1X5Q2) RNA polymerase sigma factor OS=Paulinel... 171 3e-40
K9P2V4_CYAGP (tr|K9P2V4) RNA polymerase sigma factor OS=Cyanobiu... 171 3e-40
D4ZXY7_SPIPL (tr|D4ZXY7) Group 2 RNA polymerase sigma factor Sig... 171 3e-40
D7E0K7_NOSA0 (tr|D7E0K7) RNA polymerase sigma factor OS=Nostoc a... 171 3e-40
K9U2G0_9CYAN (tr|K9U2G0) RNA polymerase, sigma 70 subunit, RpoD ... 171 3e-40
B4WPM0_9SYNE (tr|B4WPM0) RNA polymerase sigma factor OS=Synechoc... 171 3e-40
B5ILG7_9CHRO (tr|B5ILG7) RNA polymerase sigma factor OS=Cyanobiu... 171 3e-40
K8GCA2_9CYAN (tr|K8GCA2) RNA polymerase sigma factor, cyanobacte... 171 3e-40
Q5LYT0_STRT1 (tr|Q5LYT0) RNA polymerase sigma factor OS=Streptoc... 171 4e-40
Q03JL2_STRTD (tr|Q03JL2) RNA polymerase sigma factor OS=Streptoc... 171 4e-40
E4SQV0_STRTN (tr|E4SQV0) RNA polymerase sigma factor OS=Streptoc... 171 4e-40
I6Q288_STRTR (tr|I6Q288) RNA polymerase sigma factor OS=Streptoc... 171 4e-40
F8LYP0_STRTR (tr|F8LYP0) RNA polymerase sigma factor OS=Streptoc... 171 4e-40
H6PA52_STRIC (tr|H6PA52) RNA polymerase sigma factor OS=Streptoc... 171 4e-40
K9ZHC6_ANACC (tr|K9ZHC6) RNA polymerase sigma factor OS=Anabaena... 171 4e-40
F5X242_STRPX (tr|F5X242) RNA polymerase sigma factor OS=Streptoc... 171 4e-40
E0PEP9_STREI (tr|E0PEP9) RNA polymerase sigma factor OS=Streptoc... 171 4e-40
Q8P1I9_STRP8 (tr|Q8P1I9) RNA polymerase sigma factor OS=Streptoc... 171 4e-40
L9LJF6_STRTR (tr|L9LJF6) RNA polymerase sigma factor OS=Streptoc... 171 4e-40
L9LGH4_STRTR (tr|L9LGH4) RNA polymerase sigma factor OS=Streptoc... 171 4e-40
Q9A0G8_STRP1 (tr|Q9A0G8) RNA polymerase sigma factor OS=Streptoc... 171 4e-40
Q5XCW1_STRP6 (tr|Q5XCW1) RNA polymerase sigma factor OS=Streptoc... 171 4e-40
Q48UB3_STRPM (tr|Q48UB3) RNA polymerase sigma factor OS=Streptoc... 171 4e-40
Q1JMH0_STRPC (tr|Q1JMH0) RNA polymerase sigma factor OS=Streptoc... 171 4e-40
Q1JHL6_STRPD (tr|Q1JHL6) RNA polymerase sigma factor OS=Streptoc... 171 4e-40
Q1JCJ2_STRPB (tr|Q1JCJ2) RNA polymerase sigma factor OS=Streptoc... 171 4e-40
Q1J7D7_STRPF (tr|Q1J7D7) RNA polymerase sigma factor OS=Streptoc... 171 4e-40
B5XKR9_STRPZ (tr|B5XKR9) RNA polymerase sigma factor OS=Streptoc... 171 4e-40
A2RFA3_STRPG (tr|A2RFA3) RNA polymerase sigma factor OS=Streptoc... 171 4e-40
K4N5H7_STRPY (tr|K4N5H7) RNA polymerase sigma factor OS=Streptoc... 171 4e-40
J7M1E1_STRP1 (tr|J7M1E1) RNA polymerase sigma factor OS=Streptoc... 171 4e-40
I3I2H4_STRPY (tr|I3I2H4) RNA polymerase sigma factor OS=Streptoc... 171 4e-40
H8HDH9_STRPY (tr|H8HDH9) RNA polymerase sigma factor OS=Streptoc... 171 4e-40
H8H9X1_STRPY (tr|H8H9X1) RNA polymerase sigma factor OS=Streptoc... 171 4e-40
H8F6A0_STRPY (tr|H8F6A0) RNA polymerase sigma factor OS=Streptoc... 171 4e-40
G4R3W9_STRPY (tr|G4R3W9) RNA polymerase sigma factor OS=Streptoc... 171 4e-40
E0PWR8_STRPY (tr|E0PWR8) RNA polymerase sigma factor OS=Streptoc... 171 4e-40
E3CRI9_STRVE (tr|E3CRI9) RNA polymerase sigma factor OS=Streptoc... 171 4e-40
M1Y0U8_STRAG (tr|M1Y0U8) RNA polymerase sigma factor OS=Streptoc... 171 5e-40
M1XLX1_STRAG (tr|M1XLX1) RNA polymerase sigma factor OS=Streptoc... 171 5e-40
K4PST0_STRAG (tr|K4PST0) RNA polymerase sigma factor OS=Streptoc... 171 5e-40
K0U7Y0_STRAG (tr|K0U7Y0) RNA polymerase sigma factor OS=Streptoc... 171 5e-40
B1SG84_9STRE (tr|B1SG84) RNA polymerase sigma factor OS=Streptoc... 171 5e-40
F5X1S7_STRG1 (tr|F5X1S7) RNA polymerase sigma factor OS=Streptoc... 171 5e-40
F0VS25_STRG2 (tr|F0VS25) RNA polymerase sigma factor OS=Streptoc... 171 5e-40
D3HEB4_STRG3 (tr|D3HEB4) RNA polymerase sigma factor OS=Streptoc... 171 5e-40
E0PKV5_STRGY (tr|E0PKV5) RNA polymerase sigma factor OS=Streptoc... 171 5e-40
Q5M3E3_STRT2 (tr|Q5M3E3) RNA polymerase sigma factor OS=Streptoc... 171 5e-40
R6AIF2_9STRE (tr|R6AIF2) RNA polymerase sigma factor OS=Streptoc... 171 5e-40
Q8K811_STRP3 (tr|Q8K811) RNA polymerase sigma factor OS=Streptoc... 171 5e-40
F8LR80_STRE8 (tr|F8LR80) RNA polymerase sigma factor OS=Streptoc... 171 5e-40
F8LHM1_STREH (tr|F8LHM1) RNA polymerase sigma factor OS=Streptoc... 171 5e-40
F7ITH4_STRPQ (tr|F7ITH4) RNA polymerase sigma factor OS=Streptoc... 171 5e-40
R7MUC6_9STRE (tr|R7MUC6) RNA polymerase sigma factor OS=Streptoc... 171 5e-40
J7TFC3_STRSL (tr|J7TFC3) RNA polymerase sigma factor OS=Streptoc... 171 5e-40
I0QGZ7_STRSL (tr|I0QGZ7) RNA polymerase sigma factor OS=Streptoc... 171 5e-40
G2GQY2_STRSL (tr|G2GQY2) RNA polymerase sigma factor OS=Streptoc... 171 5e-40
E8KTW8_STRVE (tr|E8KTW8) RNA polymerase sigma factor OS=Streptoc... 171 5e-40
C2LRD4_STRSL (tr|C2LRD4) RNA polymerase sigma factor OS=Streptoc... 171 5e-40
Q7V698_PROMM (tr|Q7V698) RNA polymerase sigma factor OS=Prochlor... 171 5e-40
K1ZVI2_9BACT (tr|K1ZVI2) RNA polymerase sigma factor OS=uncultur... 171 5e-40
K9Q1H6_9CYAN (tr|K9Q1H6) RNA polymerase sigma factor OS=Leptolyn... 170 5e-40
G5JZ74_9STRE (tr|G5JZ74) RNA polymerase sigma factor OS=Streptoc... 170 5e-40
K9S7N4_9CYAN (tr|K9S7N4) RNA polymerase sigma factor OS=Geitleri... 170 5e-40
E1IEG5_9CHLR (tr|E1IEG5) RNA polymerase sigma factor OS=Oscilloc... 170 5e-40
A9B077_HERA2 (tr|A9B077) RNA polymerase sigma factor OS=Herpetos... 170 6e-40
Q2JT33_SYNJA (tr|Q2JT33) RNA polymerase sigma factor OS=Synechoc... 170 6e-40
K8N4M1_9STRE (tr|K8N4M1) RNA polymerase sigma factor OS=Streptoc... 170 6e-40
G5KHC5_9STRE (tr|G5KHC5) RNA polymerase sigma factor OS=Streptoc... 170 6e-40
R4W656_STRIN (tr|R4W656) RNA polymerase sigma factor RpoD OS=Str... 170 6e-40
K1LS43_STRIN (tr|K1LS43) RNA polymerase sigma factor OS=Streptoc... 170 6e-40
A7NS26_ROSCS (tr|A7NS26) RNA polymerase sigma factor OS=Roseifle... 170 6e-40
A2BVF8_PROM5 (tr|A2BVF8) RNA polymerase sigma factor OS=Prochlor... 170 6e-40
B4VH85_9CYAN (tr|B4VH85) RNA polymerase sigma factor OS=Coleofas... 170 6e-40
Q59965_SYNP2 (tr|Q59965) RNA polymerase sigma factor OS=Synechoc... 170 6e-40
G4FIM1_9SYNE (tr|G4FIM1) RNA polymerase sigma factor OS=Synechoc... 170 6e-40
B1XQ38_SYNP2 (tr|B1XQ38) Sigma factor OS=Synechococcus sp. (stra... 170 7e-40
A5GJC2_SYNPW (tr|A5GJC2) RNA polymerase sigma factor OS=Synechoc... 170 7e-40
E8UM18_STREJ (tr|E8UM18) RNA polymerase sigma factor OS=Streptoc... 170 7e-40
D5AIQ9_STRGZ (tr|D5AIQ9) RNA polymerase sigma factor OS=Streptoc... 170 7e-40
C6GUL6_STRS4 (tr|C6GUL6) RNA polymerase sigma factor OS=Streptoc... 170 7e-40
C6GNL4_STRSX (tr|C6GNL4) RNA polymerase sigma factor OS=Streptoc... 170 7e-40
C5VY65_STRSE (tr|C5VY65) RNA polymerase sigma factor OS=Streptoc... 170 7e-40
A4W2L0_STRS2 (tr|A4W2L0) RNA polymerase sigma factor OS=Streptoc... 170 7e-40
A4VWA5_STRSY (tr|A4VWA5) RNA polymerase sigma factor OS=Streptoc... 170 7e-40
R4NUY9_STRSU (tr|R4NUY9) RNA polymerase sigma factor RpoD OS=Str... 170 7e-40
M1UGW5_STRSU (tr|M1UGW5) RNA polymerase sigma factor OS=Streptoc... 170 7e-40
J7KJG7_STRSU (tr|J7KJG7) RNA polymerase sigma factor OS=Streptoc... 170 7e-40
Q0I8I7_SYNS3 (tr|Q0I8I7) RNA polymerase sigma factor OS=Synechoc... 170 7e-40
C4G971_9FIRM (tr|C4G971) RNA polymerase sigma factor OS=Shuttlew... 170 7e-40
K9VD31_9CYAN (tr|K9VD31) RNA polymerase, sigma 70 subunit, RpoD ... 170 7e-40
M2KNL2_STRMG (tr|M2KNL2) RNA polymerase sigma factor OS=Streptoc... 170 7e-40
M2JB47_STRMG (tr|M2JB47) RNA polymerase sigma factor OS=Streptoc... 170 7e-40
K9W422_9CYAN (tr|K9W422) RNA polymerase, sigma 70 subunit, RpoD ... 170 7e-40
Q8DLJ2_THEEB (tr|Q8DLJ2) RNA polymerase sigma factor OS=Thermosy... 170 7e-40
C6SR76_STRMN (tr|C6SR76) RNA polymerase sigma factor OS=Streptoc... 170 7e-40
M7E675_STRMG (tr|M7E675) RNA polymerase sigma factor RpoD OS=Str... 170 7e-40
M7DUP8_STRMG (tr|M7DUP8) RNA polymerase sigma factor RpoD OS=Str... 170 7e-40
M7DTH9_STRMG (tr|M7DTH9) RNA polymerase sigma factor RpoD OS=Str... 170 7e-40
M7DP82_STRMG (tr|M7DP82) RNA polymerase sigma factor RpoD OS=Str... 170 7e-40
M7DAT5_STRMG (tr|M7DAT5) RNA polymerase sigma factor RpoD OS=Str... 170 7e-40
M7CYU4_STRMG (tr|M7CYU4) RNA polymerase sigma factor RpoD OS=Str... 170 7e-40
M2MHE9_STRMG (tr|M2MHE9) RNA polymerase sigma factor OS=Streptoc... 170 7e-40
M2M8C1_STRMG (tr|M2M8C1) RNA polymerase sigma factor OS=Streptoc... 170 7e-40
M2M626_STRMG (tr|M2M626) RNA polymerase sigma factor OS=Streptoc... 170 7e-40
M2M0B6_STRMG (tr|M2M0B6) RNA polymerase sigma factor OS=Streptoc... 170 7e-40
M2LW19_STRMG (tr|M2LW19) RNA polymerase sigma factor OS=Streptoc... 170 7e-40
M2LKH4_STRMG (tr|M2LKH4) RNA polymerase sigma factor OS=Streptoc... 170 7e-40
M2L1S3_STRMG (tr|M2L1S3) RNA polymerase sigma factor OS=Streptoc... 170 7e-40
M2L037_STRMG (tr|M2L037) RNA polymerase sigma factor OS=Streptoc... 170 7e-40
M2KXW8_STRMG (tr|M2KXW8) RNA polymerase sigma factor OS=Streptoc... 170 7e-40
M2KW24_STRMG (tr|M2KW24) RNA polymerase sigma factor OS=Streptoc... 170 7e-40
M2KVF4_STRMG (tr|M2KVF4) RNA polymerase sigma factor OS=Streptoc... 170 7e-40
M2KLX6_STRMG (tr|M2KLX6) RNA polymerase sigma factor OS=Streptoc... 170 7e-40
M2KJK8_STRMG (tr|M2KJK8) RNA polymerase sigma factor OS=Streptoc... 170 7e-40
M2KIG5_STRMG (tr|M2KIG5) RNA polymerase sigma factor OS=Streptoc... 170 7e-40
M2K1I1_STRMG (tr|M2K1I1) RNA polymerase sigma factor OS=Streptoc... 170 7e-40
M2JP04_STRMG (tr|M2JP04) RNA polymerase sigma factor OS=Streptoc... 170 7e-40
M2JGA2_STRMG (tr|M2JGA2) RNA polymerase sigma factor OS=Streptoc... 170 7e-40
M2J7E1_STRMG (tr|M2J7E1) RNA polymerase sigma factor OS=Streptoc... 170 7e-40
M2J017_STRMG (tr|M2J017) RNA polymerase sigma factor OS=Streptoc... 170 7e-40
M2IKJ3_STRMG (tr|M2IKJ3) RNA polymerase sigma factor OS=Streptoc... 170 7e-40
M2IFN6_STRMG (tr|M2IFN6) RNA polymerase sigma factor OS=Streptoc... 170 7e-40
M2IE69_STRMG (tr|M2IE69) RNA polymerase sigma factor OS=Streptoc... 170 7e-40
M2I814_STRMG (tr|M2I814) RNA polymerase sigma factor OS=Streptoc... 170 7e-40
M2I066_STRMG (tr|M2I066) RNA polymerase sigma factor OS=Streptoc... 170 7e-40
M2HWM1_STRMG (tr|M2HWM1) RNA polymerase sigma factor OS=Streptoc... 170 7e-40
M2HST7_STRMG (tr|M2HST7) RNA polymerase sigma factor OS=Streptoc... 170 7e-40
M2HP29_STRMG (tr|M2HP29) RNA polymerase sigma factor OS=Streptoc... 170 7e-40
M2HHN4_STRMG (tr|M2HHN4) RNA polymerase sigma factor OS=Streptoc... 170 7e-40
M2H8U7_STRMG (tr|M2H8U7) RNA polymerase sigma factor OS=Streptoc... 170 7e-40
M2H5I3_STRMG (tr|M2H5I3) RNA polymerase sigma factor OS=Streptoc... 170 7e-40
M2H507_STRMG (tr|M2H507) RNA polymerase sigma factor OS=Streptoc... 170 7e-40
M2GRG3_STRMG (tr|M2GRG3) RNA polymerase sigma factor OS=Streptoc... 170 7e-40
M2GQA1_STRMG (tr|M2GQA1) RNA polymerase sigma factor OS=Streptoc... 170 7e-40
M2GLX8_STRMG (tr|M2GLX8) RNA polymerase sigma factor OS=Streptoc... 170 7e-40
M2GL46_STRMG (tr|M2GL46) RNA polymerase sigma factor OS=Streptoc... 170 7e-40
M2G753_STRMG (tr|M2G753) RNA polymerase sigma factor OS=Streptoc... 170 7e-40
M2FYS7_STRMG (tr|M2FYS7) RNA polymerase sigma factor OS=Streptoc... 170 7e-40
M2FR76_STRMG (tr|M2FR76) RNA polymerase sigma factor OS=Streptoc... 170 7e-40
M2FHE5_STRMG (tr|M2FHE5) RNA polymerase sigma factor OS=Streptoc... 170 7e-40
M2FG13_STRMG (tr|M2FG13) RNA polymerase sigma factor OS=Streptoc... 170 7e-40
M2FC82_STRMG (tr|M2FC82) RNA polymerase sigma factor OS=Streptoc... 170 7e-40
M2F5L1_STRMG (tr|M2F5L1) RNA polymerase sigma factor OS=Streptoc... 170 7e-40
M2F4C3_STRMG (tr|M2F4C3) RNA polymerase sigma factor OS=Streptoc... 170 7e-40
M2F2F1_STRMG (tr|M2F2F1) RNA polymerase sigma factor OS=Streptoc... 170 7e-40
M2EUV1_STRMG (tr|M2EUV1) RNA polymerase sigma factor OS=Streptoc... 170 7e-40
M2EN11_STRMG (tr|M2EN11) RNA polymerase sigma factor OS=Streptoc... 170 7e-40
M2EDM6_STRMG (tr|M2EDM6) RNA polymerase sigma factor OS=Streptoc... 170 7e-40
M2EB38_STRMG (tr|M2EB38) RNA polymerase sigma factor OS=Streptoc... 170 7e-40
M2EAX4_STRMG (tr|M2EAX4) RNA polymerase sigma factor OS=Streptoc... 170 7e-40
M2E1N0_STRMG (tr|M2E1N0) RNA polymerase sigma factor OS=Streptoc... 170 7e-40
M2DXI8_STRMG (tr|M2DXI8) RNA polymerase sigma factor OS=Streptoc... 170 7e-40
M2DHX4_STRMG (tr|M2DHX4) RNA polymerase sigma factor OS=Streptoc... 170 7e-40
M2DH31_STRMG (tr|M2DH31) RNA polymerase sigma factor OS=Streptoc... 170 7e-40
M2D652_STRMG (tr|M2D652) RNA polymerase sigma factor OS=Streptoc... 170 7e-40
M2HJC4_STRMG (tr|M2HJC4) RNA polymerase sigma factor OS=Streptoc... 170 8e-40
A4CRY9_SYNPV (tr|A4CRY9) RNA polymerase sigma factor OS=Synechoc... 170 8e-40
F8IML4_STREC (tr|F8IML4) RNA polymerase sigma factor OS=Streptoc... 170 8e-40
C0MGY0_STRS7 (tr|C0MGY0) RNA polymerase sigma factor OS=Streptoc... 170 8e-40
B9IPZ1_POPTR (tr|B9IPZ1) Predicted protein OS=Populus trichocarp... 170 8e-40
C0M883_STRE4 (tr|C0M883) RNA polymerase sigma factor OS=Streptoc... 170 8e-40
C5WFT4_STRDG (tr|C5WFT4) RNA polymerase sigma factor OS=Streptoc... 170 8e-40
B4U2H7_STREM (tr|B4U2H7) RNA polymerase sigma factor OS=Streptoc... 170 8e-40
K9X3C6_9NOST (tr|K9X3C6) RNA polymerase sigma factor, cyanobacte... 170 8e-40
B9DRV6_STRU0 (tr|B9DRV6) RNA polymerase sigma factor OS=Streptoc... 170 8e-40
B8HPM3_CYAP4 (tr|B8HPM3) RNA polymerase sigma factor OS=Cyanothe... 170 8e-40
K9R7S3_9CYAN (tr|K9R7S3) RNA polymerase sigma factor OS=Rivulari... 170 8e-40
E8Q992_STRED (tr|E8Q992) RNA polymerase sigma factor OS=Streptoc... 170 8e-40
Q5N3Q1_SYNP6 (tr|Q5N3Q1) RNA polymerase sigma factor OS=Synechoc... 170 9e-40
K9XM05_9CHRO (tr|K9XM05) RNA polymerase, sigma 70 subunit, RpoD ... 170 9e-40
K4Q872_STREQ (tr|K4Q872) RNA polymerase sigma factor OS=Streptoc... 170 9e-40
F9NG97_STREQ (tr|F9NG97) RNA polymerase sigma factor OS=Streptoc... 170 9e-40
F5U5W1_STREQ (tr|F5U5W1) RNA polymerase sigma factor OS=Streptoc... 170 9e-40
G5K3W9_9STRE (tr|G5K3W9) RNA polymerase sigma factor OS=Streptoc... 170 9e-40
I7WID0_STRCB (tr|I7WID0) RNA polymerase sigma factor OS=Streptoc... 170 9e-40
E9DKE8_9STRE (tr|E9DKE8) RNA polymerase sigma factor OS=Streptoc... 170 9e-40
Q10WG0_TRIEI (tr|Q10WG0) RNA polymerase sigma factor OS=Trichode... 169 9e-40
E7PVH5_STRDY (tr|E7PVH5) RNA polymerase sigma factor OS=Streptoc... 169 9e-40
F8HBB1_STRE5 (tr|F8HBB1) RNA polymerase sigma factor OS=Streptoc... 169 1e-39
Q9MTH3_SINAL (tr|Q9MTH3) Sigma factor 2 (Precursor) OS=Sinapis a... 169 1e-39
B4WSK5_9SYNE (tr|B4WSK5) RNA polymerase sigma factor, cyanobacte... 169 1e-39
F4Y0Z1_9CYAN (tr|F4Y0Z1) Putative RNA polymerase sigma factor OS... 169 1e-39
K7WX98_9NOST (tr|K7WX98) RpoD family RNA polymerase sigma subuni... 169 1e-39
K9QYS3_NOSS7 (tr|K9QYS3) RNA polymerase sigma factor, cyanobacte... 169 1e-39
M4YXS3_STREQ (tr|M4YXS3) DNA primase OS=Streptococcus dysgalacti... 169 1e-39
L8L7Y4_9CYAN (tr|L8L7Y4) RNA polymerase sigma factor OS=Leptolyn... 169 1e-39
C7QSX1_CYAP0 (tr|C7QSX1) RNA polymerase sigma factor OS=Cyanothe... 169 1e-39
B7K611_CYAP8 (tr|B7K611) RNA polymerase sigma factor OS=Cyanothe... 169 1e-39
M5PHW4_9STRE (tr|M5PHW4) RNA polymerase sigma factor OS=Streptoc... 169 1e-39
M3HPD2_9STRE (tr|M3HPD2) RNA polymerase sigma factor OS=Streptoc... 169 1e-39
P96035_SYNSP (tr|P96035) RNA polymerase sigma factor OS=Synechoc... 169 1e-39
Q017N3_OSTTA (tr|Q017N3) SigA (ISS) OS=Ostreococcus tauri GN=Ot0... 169 1e-39
E0S1I8_BUTPB (tr|E0S1I8) RNA polymerase sigma factor OS=Butyrivi... 169 1e-39
D7E5B4_NOSA0 (tr|D7E5B4) RNA polymerase sigma factor OS=Nostoc a... 169 1e-39
B9P0P2_PROMR (tr|B9P0P2) RNA polymerase sigma factor OS=Prochlor... 169 1e-39
B9LEN8_CHLSY (tr|B9LEN8) RNA polymerase sigma factor OS=Chlorofl... 169 1e-39
A9WAH7_CHLAA (tr|A9WAH7) RNA polymerase sigma factor OS=Chlorofl... 169 1e-39
A8G3L2_PROM2 (tr|A8G3L2) RNA polymerase sigma factor OS=Prochlor... 169 1e-39
K9UA01_9CYAN (tr|K9UA01) RNA polymerase sigma factor OS=Chroococ... 169 1e-39
D8G4S3_9CYAN (tr|D8G4S3) RNA polymerase sigma factor OS=Oscillat... 169 1e-39
A5GSD3_SYNR3 (tr|A5GSD3) RNA polymerase sigma factor OS=Synechoc... 169 1e-39
Q10UV2_TRIEI (tr|Q10UV2) RNA polymerase sigma factor OS=Trichode... 169 2e-39
Q31C37_PROM9 (tr|Q31C37) RNA polymerase sigma factor OS=Prochlor... 169 2e-39
L8L5U0_9SYNC (tr|L8L5U0) RNA polymerase sigma factor OS=Synechoc... 169 2e-39
L0DAT7_SINAD (tr|L0DAT7) RNA polymerase sigma factor OS=Singulis... 169 2e-39
K6SIU9_LACCA (tr|K6SIU9) RNA polymerase sigma factor OS=Lactobac... 169 2e-39
I2NTT4_STRPA (tr|I2NTT4) RNA polymerase sigma factor OS=Streptoc... 169 2e-39
I1ZL56_STRPA (tr|I1ZL56) RNA polymerase sigma factor OS=Streptoc... 169 2e-39
C7TJI1_LACRL (tr|C7TJI1) RNA polymerase sigma factor OS=Lactobac... 169 2e-39
A5UPS4_ROSS1 (tr|A5UPS4) RNA polymerase sigma factor OS=Roseifle... 169 2e-39
F8DFR5_STREP (tr|F8DFR5) RNA polymerase sigma factor OS=Streptoc... 169 2e-39
E3CEF8_STRPA (tr|E3CEF8) RNA polymerase sigma factor OS=Streptoc... 169 2e-39
F5ZHI7_STRPW (tr|F5ZHI7) RNA polymerase sigma factor OS=Streptoc... 169 2e-39
E8K3W2_STRPA (tr|E8K3W2) RNA polymerase sigma factor OS=Streptoc... 169 2e-39
E8JZS8_9STRE (tr|E8JZS8) RNA polymerase sigma factor OS=Streptoc... 169 2e-39
G6IU51_LACRH (tr|G6IU51) RNA polymerase sigma factor OS=Lactobac... 169 2e-39
G6APP9_LACRH (tr|G6APP9) RNA polymerase sigma factor OS=Lactobac... 169 2e-39
Q8S9C8_CYAPA (tr|Q8S9C8) RNA polymerase sigma factor OS=Cyanopho... 169 2e-39
K8MR54_9STRE (tr|K8MR54) RNA polymerase sigma factor OS=Streptoc... 168 2e-39
K6QUD6_LACCA (tr|K6QUD6) RNA polymerase sigma factor OS=Lactobac... 168 2e-39
K8QLH7_LACRH (tr|K8QLH7) RNA polymerase sigma factor OS=Lactobac... 168 2e-39
K8QKA9_LACRH (tr|K8QKA9) RNA polymerase sigma factor OS=Lactobac... 168 2e-39
G7V0V7_LACRH (tr|G7V0V7) RNA polymerase sigma factor OS=Lactobac... 168 2e-39
C2JXD0_LACRH (tr|C2JXD0) RNA polymerase sigma factor OS=Lactobac... 168 2e-39
Q038U5_LACC3 (tr|Q038U5) RNA polymerase sigma factor OS=Lactobac... 168 2e-39
F2ME31_LACCD (tr|F2ME31) RNA polymerase sigma factor OS=Lactobac... 168 2e-39
F2M5K0_LACCC (tr|F2M5K0) RNA polymerase sigma factor OS=Lactobac... 168 2e-39
D8GGX1_LACCZ (tr|D8GGX1) RNA polymerase sigma factor OS=Lactobac... 168 2e-39
C7TCR3_LACRG (tr|C7TCR3) RNA polymerase sigma factor OS=Lactobac... 168 2e-39
B3WEK4_LACCB (tr|B3WEK4) RNA polymerase sigma factor OS=Lactobac... 168 2e-39
K6SMR5_LACCA (tr|K6SMR5) RNA polymerase sigma factor OS=Lactobac... 168 2e-39
K6SKL0_LACCA (tr|K6SKL0) RNA polymerase sigma factor OS=Lactobac... 168 2e-39
K6RLP8_LACCA (tr|K6RLP8) RNA polymerase sigma factor OS=Lactobac... 168 2e-39
K6RE91_LACCA (tr|K6RE91) RNA polymerase sigma factor OS=Lactobac... 168 2e-39
K6RCM2_LACCA (tr|K6RCM2) RNA polymerase sigma factor OS=Lactobac... 168 2e-39
K6R002_LACCA (tr|K6R002) RNA polymerase sigma factor OS=Lactobac... 168 2e-39
K6QF93_LACCA (tr|K6QF93) RNA polymerase sigma factor OS=Lactobac... 168 2e-39
C2FFD7_LACPA (tr|C2FFD7) RNA polymerase sigma factor OS=Lactobac... 168 2e-39
B5QNG5_LACRH (tr|B5QNG5) RNA polymerase sigma factor OS=Lactobac... 168 2e-39
B2J5S6_NOSP7 (tr|B2J5S6) RNA polymerase sigma factor OS=Nostoc p... 168 2e-39
F5UJ50_9CYAN (tr|F5UJ50) RNA polymerase, sigma 70 subunit, RpoD ... 168 2e-39
A9BEB7_PROM4 (tr|A9BEB7) RNA polymerase sigma factor OS=Prochlor... 168 2e-39
K6DHZ3_SPIPL (tr|K6DHZ3) RNA polymerase sigma factor OS=Arthrosp... 168 2e-39
D5A0H0_SPIPL (tr|D5A0H0) RNA polymerase sigma factor OS=Arthrosp... 168 2e-39
K8GQ72_9CYAN (tr|K8GQ72) RNA polymerase sigma factor OS=Oscillat... 168 2e-39
K9XPH8_STAC7 (tr|K9XPH8) RNA polymerase sigma factor OS=Stanieri... 168 2e-39
K9WNS7_9CYAN (tr|K9WNS7) RNA polymerase sigma factor, cyanobacte... 168 2e-39
D4TFM7_9NOST (tr|D4TFM7) SigD (Sigma 28 (Flagella/spoulation)) O... 168 2e-39
K6S9U6_LACCA (tr|K6S9U6) RNA polymerase sigma factor OS=Lactobac... 168 2e-39
K6QPN4_LACCA (tr|K6QPN4) RNA polymerase sigma factor OS=Lactobac... 168 2e-39
K6Q6V7_LACCA (tr|K6Q6V7) RNA polymerase sigma factor OS=Lactobac... 168 2e-39
K0NAV6_LACCA (tr|K0NAV6) RNA polymerase sigma factor OS=Lactobac... 168 2e-39
C5F5B8_LACPA (tr|C5F5B8) RNA polymerase sigma factor OS=Lactobac... 168 2e-39
H1WE70_9CYAN (tr|H1WE70) RNA polymerase sigma factor OS=Arthrosp... 168 2e-39
B5VWQ7_SPIMA (tr|B5VWQ7) RNA polymerase sigma factor OS=Arthrosp... 168 2e-39
K1X4L7_SPIPL (tr|K1X4L7) RNA polymerase sigma factor OS=Arthrosp... 168 3e-39
J1SD02_STRMT (tr|J1SD02) RNA polymerase sigma factor OS=Streptoc... 168 3e-39
I5AR08_EUBCE (tr|I5AR08) RNA polymerase sigma factor OS=Eubacter... 168 3e-39
F9PUU0_9STRE (tr|F9PUU0) RNA polymerase sigma factor OS=Streptoc... 168 3e-39
F9PBH7_9STRE (tr|F9PBH7) RNA polymerase sigma factor OS=Streptoc... 168 3e-39
F5W0G9_9STRE (tr|F5W0G9) RNA polymerase sigma factor OS=Streptoc... 168 3e-39
Q7V2I0_PROMP (tr|Q7V2I0) RNA polymerase sigma factor OS=Prochlor... 168 3e-39
A2BPX8_PROMS (tr|A2BPX8) RNA polymerase sigma factor OS=Prochlor... 168 3e-39
J3JCK7_9LACO (tr|J3JCK7) RNA polymerase sigma factor OS=Lactobac... 168 3e-39
E8KAV3_9STRE (tr|E8KAV3) RNA polymerase sigma factor OS=Streptoc... 168 3e-39
A3PBM1_PROM0 (tr|A3PBM1) RNA polymerase sigma factor OS=Prochlor... 168 3e-39
M1V5C7_CYAME (tr|M1V5C7) Sigma subunit for chloroplast RNA polym... 167 3e-39
R9NJP2_9FIRM (tr|R9NJP2) RNA polymerase sigma factor rpoD OS=Dor... 167 3e-39
D4TFK7_9NOST (tr|D4TFK7) RNA polymerase sigma factor OS=Cylindro... 167 4e-39
K2DTE7_9BACT (tr|K2DTE7) RNA polymerase sigma factor OS=uncultur... 167 4e-39
P77842_CHLAU (tr|P77842) RNA polymerase sigma factor OS=Chlorofl... 167 4e-39
Q05RP2_9SYNE (tr|Q05RP2) RNA polymerase sigma factor OS=Synechoc... 167 4e-39
R8W2M7_9CLOT (tr|R8W2M7) RNA polymerase sigma factor RpoD OS=But... 167 4e-39
Q8DL79_THEEB (tr|Q8DL79) RNA polymerase sigma factor OS=Thermosy... 167 4e-39
M4EPL2_BRARP (tr|M4EPL2) Uncharacterized protein OS=Brassica rap... 167 4e-39
Q7NKZ2_GLOVI (tr|Q7NKZ2) RNA polymerase sigma factor OS=Gloeobac... 167 4e-39
Q9FD90_SYNEL (tr|Q9FD90) RNA polymerase sigma factor OS=Synechoc... 167 4e-39
Q04KL3_STRP2 (tr|Q04KL3) RNA polymerase sigma factor OS=Streptoc... 167 4e-39
H8LG42_STRET (tr|H8LG42) RNA polymerase sigma factor OS=Streptoc... 167 4e-39
E1XR77_STRZI (tr|E1XR77) RNA polymerase sigma factor OS=Streptoc... 167 4e-39
E1XK81_STRZN (tr|E1XK81) RNA polymerase sigma factor OS=Streptoc... 167 4e-39
E1XGF4_STRZO (tr|E1XGF4) RNA polymerase sigma factor OS=Streptoc... 167 4e-39
E0TNG9_STRZ6 (tr|E0TNG9) RNA polymerase sigma factor OS=Streptoc... 167 4e-39
E0SZN2_STRZA (tr|E0SZN2) RNA polymerase sigma factor OS=Streptoc... 167 4e-39
D6ZSQ2_STRP0 (tr|D6ZSQ2) RNA polymerase sigma factor OS=Streptoc... 167 4e-39
C1CRH6_STRZT (tr|C1CRH6) RNA polymerase sigma factor OS=Streptoc... 167 4e-39
C1CKE0_STRZP (tr|C1CKE0) RNA polymerase sigma factor OS=Streptoc... 167 4e-39
C1CE60_STRZJ (tr|C1CE60) RNA polymerase sigma factor OS=Streptoc... 167 4e-39
C1C770_STRP7 (tr|C1C770) RNA polymerase sigma factor OS=Streptoc... 167 4e-39
B8ZPS2_STRPJ (tr|B8ZPS2) RNA polymerase sigma factor OS=Streptoc... 167 4e-39
B2IQ35_STRPS (tr|B2IQ35) RNA polymerase sigma factor OS=Streptoc... 167 4e-39
B1IBL3_STRPI (tr|B1IBL3) RNA polymerase sigma factor OS=Streptoc... 167 4e-39
A5GWT3_SYNR3 (tr|A5GWT3) RNA polymerase sigma factor OS=Synechoc... 167 4e-39
R0NRN4_STREE (tr|R0NRN4) RNA polymerase sigma factor RpoD OS=Str... 167 4e-39
R0NJJ4_STREE (tr|R0NJJ4) RNA polymerase sigma factor RpoD OS=Str... 167 4e-39
R0N9V1_STREE (tr|R0N9V1) RNA polymerase sigma factor RpoD OS=Str... 167 4e-39
R0MHG8_STREE (tr|R0MHG8) RNA polymerase sigma factor RpoD OS=Str... 167 4e-39
R0M7S8_STREE (tr|R0M7S8) RNA polymerase sigma factor RpoD OS=Str... 167 4e-39
R0LTK4_STREE (tr|R0LTK4) RNA polymerase sigma factor RpoD OS=Str... 167 4e-39
R0KZA7_STREE (tr|R0KZA7) RNA polymerase sigma factor RpoD OS=Str... 167 4e-39
N1XSX0_STREE (tr|N1XSX0) RNA polymerase sigma factor RpoD OS=Str... 167 4e-39
N1XKH1_STREE (tr|N1XKH1) RNA polymerase sigma factor RpoD OS=Str... 167 4e-39
N1X3N5_STREE (tr|N1X3N5) RNA polymerase sigma factor RpoD OS=Str... 167 4e-39
N1X234_STREE (tr|N1X234) RNA polymerase sigma factor RpoD OS=Str... 167 4e-39
M7MSD5_STREE (tr|M7MSD5) RNA polymerase sigma factor RpoD OS=Str... 167 4e-39
M5N797_STREE (tr|M5N797) RNA polymerase sigma factor RpoD OS=Str... 167 4e-39
M5N3B0_STREE (tr|M5N3B0) RNA polymerase sigma factor RpoD OS=Str... 167 4e-39
M5MSC6_STREE (tr|M5MSC6) RNA polymerase sigma factor RpoD OS=Str... 167 4e-39
>I1LP24_SOYBN (tr|I1LP24) Uncharacterized protein OS=Glycine max PE=4 SV=1
Length = 503
Score = 623 bits (1607), Expect = e-176, Method: Compositional matrix adjust.
Identities = 300/337 (89%), Positives = 322/337 (95%)
Query: 1 MQACDAMQMRSLISPELLQNRSKGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRL 60
++ C AMQ++S ISPELLQ+R KGYVKG+VSE+LLSHAEVV LSEKIKVGLSL+EHKSRL
Sbjct: 167 IKTCGAMQLKSKISPELLQHRLKGYVKGLVSEELLSHAEVVNLSEKIKVGLSLEEHKSRL 226
Query: 61 KEKLGCEPSDDQIAASLKISRSELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEM 120
KEKLGCEPSDDQ+A SLKISR+ELRA+ IEC+LARE+LAMSNVRLVMSIAQ+YDN+GAEM
Sbjct: 227 KEKLGCEPSDDQMATSLKISRTELRARMIECSLAREKLAMSNVRLVMSIAQKYDNLGAEM 286
Query: 121 ADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLS 180
DLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLP HLHERLS
Sbjct: 287 GDLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPAHLHERLS 346
Query: 181 LIRTAKFRLEERGITPTIDRIAKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDT 240
LIR AKFRLEERGITPTIDRIAK LNMSQKKVRNATEAISK+ SLDREAFPSLNGL G+T
Sbjct: 347 LIRNAKFRLEERGITPTIDRIAKYLNMSQKKVRNATEAISKIISLDREAFPSLNGLQGET 406
Query: 241 HHCYIADNRLENIPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDKECLTWEDIS 300
HH YIADNR+ENIPW+GVDEW LKDEVN+LINVTLVEREREIIRLYYGL+KECLTWEDIS
Sbjct: 407 HHSYIADNRVENIPWNGVDEWALKDEVNRLINVTLVEREREIIRLYYGLEKECLTWEDIS 466
Query: 301 KRIGLSRERVRQVGLVALEKLKHAARKREMEAMLLKH 337
KRIGLSRERVRQVGLVALEKLKHAARKR+MEAMLLKH
Sbjct: 467 KRIGLSRERVRQVGLVALEKLKHAARKRQMEAMLLKH 503
>I1L5H1_SOYBN (tr|I1L5H1) Uncharacterized protein OS=Glycine max PE=4 SV=1
Length = 503
Score = 617 bits (1590), Expect = e-174, Method: Compositional matrix adjust.
Identities = 298/337 (88%), Positives = 320/337 (94%)
Query: 1 MQACDAMQMRSLISPELLQNRSKGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRL 60
++ C AMQ++S ISPELLQ+R KGYVKG+VSE+LLSHAEVV LSE+IKVGLSL+EHKSRL
Sbjct: 167 IKTCGAMQLKSKISPELLQHRLKGYVKGIVSEELLSHAEVVNLSERIKVGLSLEEHKSRL 226
Query: 61 KEKLGCEPSDDQIAASLKISRSELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEM 120
KE+LGCEPSDDQ+A SLKISR+ELRA+ IECTLARE+LAMSNVRLVMSIAQ+YDN+GAEM
Sbjct: 227 KERLGCEPSDDQMAISLKISRTELRARMIECTLAREKLAMSNVRLVMSIAQKYDNLGAEM 286
Query: 121 ADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLS 180
DLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLP HLHERLS
Sbjct: 287 GDLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPAHLHERLS 346
Query: 181 LIRTAKFRLEERGITPTIDRIAKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDT 240
LIR AKFRLEERGITPTIDRIAK LNMSQKKVRNATEAISK SLDREAFPSLNG+ G+T
Sbjct: 347 LIRNAKFRLEERGITPTIDRIAKYLNMSQKKVRNATEAISKTISLDREAFPSLNGIQGET 406
Query: 241 HHCYIADNRLENIPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDKECLTWEDIS 300
HH YIAD+R+ENIPW+GVDEW LKDEVNKLINVTLVEREREIIRLYYGLDKE LTWEDIS
Sbjct: 407 HHSYIADDRVENIPWNGVDEWALKDEVNKLINVTLVEREREIIRLYYGLDKEGLTWEDIS 466
Query: 301 KRIGLSRERVRQVGLVALEKLKHAARKREMEAMLLKH 337
KRIGLSRERVRQVGLVALEKLKHAARKR+MEAMLLKH
Sbjct: 467 KRIGLSRERVRQVGLVALEKLKHAARKRQMEAMLLKH 503
>B9SDF8_RICCO (tr|B9SDF8) RNA polymerase sigma factor rpoD, putative OS=Ricinus
communis GN=RCOM_1517450 PE=4 SV=1
Length = 508
Score = 593 bits (1529), Expect = e-167, Method: Compositional matrix adjust.
Identities = 282/337 (83%), Positives = 315/337 (93%)
Query: 1 MQACDAMQMRSLISPELLQNRSKGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRL 60
+QA Q++S +SPELLQNR KGYVKGVVSE+LLSHAEVV+LS IK GLSL++HKSRL
Sbjct: 172 VQANVFKQLKSAVSPELLQNRLKGYVKGVVSEELLSHAEVVRLSRIIKAGLSLEDHKSRL 231
Query: 61 KEKLGCEPSDDQIAASLKISRSELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEM 120
KE+LGC+PSD+Q+A SLKISR+EL++K+I C+LARE+LAMSNVRLVMSIAQRYDNMGAEM
Sbjct: 232 KERLGCDPSDEQVATSLKISRAELQSKSIACSLAREKLAMSNVRLVMSIAQRYDNMGAEM 291
Query: 121 ADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLS 180
ADLVQGGLIGLLRGIEKFDSSKGF+ISTYVYWWIRQGVSRALVENSRTLRLP HLHERL
Sbjct: 292 ADLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG 351
Query: 181 LIRTAKFRLEERGITPTIDRIAKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDT 240
LIR AK RLEE+G+TP+IDRIA+SLN+SQKKVRNATEA+SKVFSLDREAFPSLNGLPG+T
Sbjct: 352 LIRNAKIRLEEKGVTPSIDRIAESLNISQKKVRNATEAVSKVFSLDREAFPSLNGLPGET 411
Query: 241 HHCYIADNRLENIPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDKECLTWEDIS 300
HH YIADN LEN PWHGVD+W LKDEVNKLIN+TL ERE+EIIRLYYGLD E LTWEDIS
Sbjct: 412 HHSYIADNCLENNPWHGVDDWALKDEVNKLINLTLQEREQEIIRLYYGLDNESLTWEDIS 471
Query: 301 KRIGLSRERVRQVGLVALEKLKHAARKREMEAMLLKH 337
KRIGLSRERVRQVGLVALEKLKHAARK+++EAML+KH
Sbjct: 472 KRIGLSRERVRQVGLVALEKLKHAARKKKLEAMLVKH 508
>M5X2A7_PRUPE (tr|M5X2A7) Uncharacterized protein OS=Prunus persica
GN=PRUPE_ppa004393mg PE=4 SV=1
Length = 512
Score = 592 bits (1526), Expect = e-167, Method: Compositional matrix adjust.
Identities = 282/337 (83%), Positives = 314/337 (93%)
Query: 1 MQACDAMQMRSLISPELLQNRSKGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRL 60
M +R+++SPELLQN KGYVKGV+SE LL+H EVV+LS+KIKVGLS++EHKSRL
Sbjct: 176 MHPSTNKPLRAIVSPELLQNHVKGYVKGVLSEDLLTHTEVVRLSKKIKVGLSVEEHKSRL 235
Query: 61 KEKLGCEPSDDQIAASLKISRSELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEM 120
KE+LGCEPSD+Q+A SL+ISR++L++K IEC LARE+LAMSNVRLVMSIAQRYDNMGAEM
Sbjct: 236 KERLGCEPSDEQLATSLRISRAQLQSKLIECKLAREKLAMSNVRLVMSIAQRYDNMGAEM 295
Query: 121 ADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLS 180
ADL+QGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERL
Sbjct: 296 ADLIQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLG 355
Query: 181 LIRTAKFRLEERGITPTIDRIAKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDT 240
LIR AK RLEE+GITP+IDRIA+SLNMS+KKVRNATEAISKVFSLDR+AFPSLNGLPG+T
Sbjct: 356 LIRNAKIRLEEKGITPSIDRIAESLNMSKKKVRNATEAISKVFSLDRDAFPSLNGLPGET 415
Query: 241 HHCYIADNRLENIPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDKECLTWEDIS 300
HH YIADNRLENIPWHGVD W LK+EV+KLIN+ L ERE+EII+LYYGL+ ECLTWEDIS
Sbjct: 416 HHSYIADNRLENIPWHGVDAWALKEEVSKLINMMLGEREKEIIQLYYGLENECLTWEDIS 475
Query: 301 KRIGLSRERVRQVGLVALEKLKHAARKREMEAMLLKH 337
KRIGLSRERVRQVGLVALEKLKHAARKREMEAMLLKH
Sbjct: 476 KRIGLSRERVRQVGLVALEKLKHAARKREMEAMLLKH 512
>B9IPY1_POPTR (tr|B9IPY1) Predicted protein OS=Populus trichocarpa
GN=POPTRDRAFT_665539 PE=4 SV=1
Length = 509
Score = 579 bits (1493), Expect = e-163, Method: Compositional matrix adjust.
Identities = 274/336 (81%), Positives = 310/336 (92%)
Query: 2 QACDAMQMRSLISPELLQNRSKGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLK 61
Q+ D +RS+ SP+LLQNR KGYVKGVVS+++L H EVV+LS I+ GLS ++HKSRLK
Sbjct: 174 QSSDFKFLRSVSSPDLLQNRLKGYVKGVVSDEVLPHTEVVRLSRIIRAGLSFEDHKSRLK 233
Query: 62 EKLGCEPSDDQIAASLKISRSELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMA 121
E+LGCEPSD+QIA SL+ISR++L++K I+C+LARE+LAMSNVRLVMSIAQ+YDNMGAEMA
Sbjct: 234 ERLGCEPSDEQIADSLRISRADLQSKLIQCSLAREKLAMSNVRLVMSIAQKYDNMGAEMA 293
Query: 122 DLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSL 181
DLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALV+NSRTLRLP HLHERL L
Sbjct: 294 DLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVDNSRTLRLPNHLHERLGL 353
Query: 182 IRTAKFRLEERGITPTIDRIAKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTH 241
IR AK RLEE+G+TP+IDRIA+SLNMSQ+KVRNATEAISKVFSLDREAFPSLNGLPG+TH
Sbjct: 354 IRNAKIRLEEKGVTPSIDRIAESLNMSQRKVRNATEAISKVFSLDREAFPSLNGLPGETH 413
Query: 242 HCYIADNRLENIPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDKECLTWEDISK 301
H YIADNR EN PWHGVDEW LK+EVNKLI+ TL ERE+EIIRLY+GLD+ECLTWEDISK
Sbjct: 414 HSYIADNRPENNPWHGVDEWALKEEVNKLIDSTLQEREKEIIRLYHGLDQECLTWEDISK 473
Query: 302 RIGLSRERVRQVGLVALEKLKHAARKREMEAMLLKH 337
R+GLSRERVRQVGLVALEKLKHAARKR EAML+KH
Sbjct: 474 RMGLSRERVRQVGLVALEKLKHAARKRNTEAMLVKH 509
>Q9SLX4_TOBAC (tr|Q9SLX4) Sigma factor OS=Nicotiana tabacum GN=sigA1 PE=2 SV=1
Length = 508
Score = 567 bits (1462), Expect = e-159, Method: Compositional matrix adjust.
Identities = 273/332 (82%), Positives = 306/332 (92%)
Query: 6 AMQMRSLISPELLQNRSKGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLG 65
A +RS+I PELLQNR KGYVKGVVSE+LL+HAEV++LS+KI+VGL L+E KSRLKE+LG
Sbjct: 177 AKPLRSIIGPELLQNRLKGYVKGVVSEELLTHAEVLQLSKKIQVGLYLEEQKSRLKERLG 236
Query: 66 CEPSDDQIAASLKISRSELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQ 125
CEPSDDQ+A SLK+SR++L++ IEC+LARERLAMSNVRLVMSIAQRYDN+GAEMADLVQ
Sbjct: 237 CEPSDDQLAVSLKMSRTDLQSTLIECSLARERLAMSNVRLVMSIAQRYDNVGAEMADLVQ 296
Query: 126 GGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTA 185
GGLIGLLRGIEKFD SKG+KISTYVYWWIRQGVSRALVENSRTLRLPT+LHERLSLIR A
Sbjct: 297 GGLIGLLRGIEKFDPSKGYKISTYVYWWIRQGVSRALVENSRTLRLPTYLHERLSLIRNA 356
Query: 186 KFRLEERGITPTIDRIAKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYI 245
K RLEE+GITP+++ IA SLNMSQKKVRNATEA SK++SLDREAFPSLNGLPG+T H YI
Sbjct: 357 KARLEEKGITPSVNNIAASLNMSQKKVRNATEASSKMYSLDREAFPSLNGLPGETLHSYI 416
Query: 246 ADNRLENIPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDKECLTWEDISKRIGL 305
ADN LEN PWHGVD W LKDEVN LI+ TL +REREIIRLYYGLD ECLTWEDISKRIGL
Sbjct: 417 ADNHLENNPWHGVDVWALKDEVNNLISSTLRDREREIIRLYYGLDNECLTWEDISKRIGL 476
Query: 306 SRERVRQVGLVALEKLKHAARKREMEAMLLKH 337
SRERVRQVGLVALEKLKHAARKR+++AML+K
Sbjct: 477 SRERVRQVGLVALEKLKHAARKRQLDAMLIKQ 508
>M4CWB6_BRARP (tr|M4CWB6) Uncharacterized protein OS=Brassica rapa subsp.
pekinensis GN=Bra008513 PE=4 SV=1
Length = 492
Score = 567 bits (1461), Expect = e-159, Method: Compositional matrix adjust.
Identities = 270/328 (82%), Positives = 304/328 (92%), Gaps = 2/328 (0%)
Query: 12 LISPELLQNR--SKGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPS 69
+++ +L QN GYVKGV+S+ +LSHAEVV+LS+KIK GL LDEHKSRLK++LGCEPS
Sbjct: 165 VVNSDLFQNNRVKGGYVKGVISDDVLSHAEVVRLSKKIKSGLRLDEHKSRLKDRLGCEPS 224
Query: 70 DDQIAASLKISRSELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLI 129
D+Q+A SLKISR+EL+A +EC LARE+LAMSNVRLVMSIAQRYDNMGAEM+DLVQGGLI
Sbjct: 225 DEQLAVSLKISRAELQAWLMECNLAREKLAMSNVRLVMSIAQRYDNMGAEMSDLVQGGLI 284
Query: 130 GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRL 189
GLLRGIEKFDSSKGF+ISTYVYWWIRQGVSRALV+NSRTLRLPTHLHERL LIR AK RL
Sbjct: 285 GLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRL 344
Query: 190 EERGITPTIDRIAKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNR 249
+E+G+TP+IDRIA+SLNMSQKKVRNATEA+SK+FSLDR+AFPSLNGLPG+THH YIADNR
Sbjct: 345 QEKGVTPSIDRIAESLNMSQKKVRNATEAVSKIFSLDRDAFPSLNGLPGETHHSYIADNR 404
Query: 250 LENIPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDKECLTWEDISKRIGLSRER 309
LEN PWHG DEW LKDEV+KLI+ TL EREREIIRLYYGLDKECLTWEDISKRIGLSRER
Sbjct: 405 LENNPWHGYDEWALKDEVSKLISATLGEREREIIRLYYGLDKECLTWEDISKRIGLSRER 464
Query: 310 VRQVGLVALEKLKHAARKREMEAMLLKH 337
VRQVGLVALEKLKHAARK +MEAM+LK+
Sbjct: 465 VRQVGLVALEKLKHAARKSKMEAMILKN 492
>Q9SLX3_TOBAC (tr|Q9SLX3) Sigma factor OS=Nicotiana tabacum GN=sigA2 PE=2 SV=1
Length = 502
Score = 566 bits (1458), Expect = e-159, Method: Compositional matrix adjust.
Identities = 270/330 (81%), Positives = 302/330 (91%)
Query: 8 QMRSLISPELLQNRSKGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCE 67
++RS+I PELLQNRSKGY+ GVV ++LL+H EVV+LS+KIK GL L+E KSRLKE+LGCE
Sbjct: 173 RLRSVIGPELLQNRSKGYINGVVGQELLTHTEVVQLSKKIKFGLYLEEQKSRLKERLGCE 232
Query: 68 PSDDQIAASLKISRSELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGG 127
PSDDQ+A SLKISR++LR+ IEC+LARE+LAMSNVRLVMSIAQRYD G EMADL+QGG
Sbjct: 233 PSDDQLAISLKISRADLRSTLIECSLAREKLAMSNVRLVMSIAQRYDTNGTEMADLIQGG 292
Query: 128 LIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKF 187
LIGLLRGIEKFD S+GFKISTYVYWWIRQGVSRALVENSRTLRLP HLHERLSLIR AK
Sbjct: 293 LIGLLRGIEKFDHSRGFKISTYVYWWIRQGVSRALVENSRTLRLPIHLHERLSLIRNAKI 352
Query: 188 RLEERGITPTIDRIAKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIAD 247
+L+E GITP+I++IA+ LNMSQKKVRNATEA SKVFSLDREAFPSLNGLPG+T H YIAD
Sbjct: 353 KLKENGITPSIEKIAECLNMSQKKVRNATEASSKVFSLDREAFPSLNGLPGETLHSYIAD 412
Query: 248 NRLENIPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDKECLTWEDISKRIGLSR 307
NRLENIPWHGVDEW LKDEVN LI+ TL EREREI+RLYYGLD ECLTWEDIS+RIGLSR
Sbjct: 413 NRLENIPWHGVDEWMLKDEVNNLISSTLREREREIVRLYYGLDNECLTWEDISRRIGLSR 472
Query: 308 ERVRQVGLVALEKLKHAARKREMEAMLLKH 337
ERVRQVGLVALEKLKHAARKR ++AML+KH
Sbjct: 473 ERVRQVGLVALEKLKHAARKRRLDAMLVKH 502
>R0GH75_9BRAS (tr|R0GH75) Uncharacterized protein OS=Capsella rubella
GN=CARUB_v10020145mg PE=4 SV=1
Length = 521
Score = 565 bits (1455), Expect = e-158, Method: Compositional matrix adjust.
Identities = 274/332 (82%), Positives = 308/332 (92%), Gaps = 2/332 (0%)
Query: 8 QMRSLISPELLQ-NRSKG-YVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLG 65
Q+RS++S EL Q NR +G YVKGV+SE +LSH EVV+LS+KIK GL LD+HKSRLK++LG
Sbjct: 190 QVRSVMSSELFQHNRVRGGYVKGVISEDVLSHTEVVRLSKKIKSGLRLDDHKSRLKDRLG 249
Query: 66 CEPSDDQIAASLKISRSELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQ 125
CEPSD+Q+A SLKISR+EL+A +EC LARE+LAMSNVRLVMSIAQRYDN+GAEM+DLVQ
Sbjct: 250 CEPSDEQLAISLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQ 309
Query: 126 GGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTA 185
GGLIGLLRGIEKFDSSKGF+ISTYVYWWIRQGVSRALV+NSRTLRLPTHLHERL LIR A
Sbjct: 310 GGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNA 369
Query: 186 KFRLEERGITPTIDRIAKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYI 245
K RL+E+GITP+IDRIA+SLNMSQKKVRNATEA+SK+FSLDR+AFPSLNGLPG+THH YI
Sbjct: 370 KLRLQEKGITPSIDRIAESLNMSQKKVRNATEAVSKIFSLDRDAFPSLNGLPGETHHSYI 429
Query: 246 ADNRLENIPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDKECLTWEDISKRIGL 305
ADNRLEN PWHG DE LK+EV+KLI TL EREREIIRLYYGLDKECLTWEDISKRIGL
Sbjct: 430 ADNRLENNPWHGYDELALKEEVSKLITATLGEREREIIRLYYGLDKECLTWEDISKRIGL 489
Query: 306 SRERVRQVGLVALEKLKHAARKREMEAMLLKH 337
SRERVRQVGLVALEKLKHAARKR+MEAM+LK+
Sbjct: 490 SRERVRQVGLVALEKLKHAARKRKMEAMILKN 521
>F6HE86_VITVI (tr|F6HE86) Putative uncharacterized protein OS=Vitis vinifera
GN=VIT_16s0039g00660 PE=4 SV=1
Length = 578
Score = 564 bits (1453), Expect = e-158, Method: Compositional matrix adjust.
Identities = 272/320 (85%), Positives = 300/320 (93%)
Query: 18 LQNRSKGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASL 77
++NR KGYVKGVVSE+LL+HA+VV LS KIK GL L++HKSRLKE++G EP+D+Q+AASL
Sbjct: 259 VENRLKGYVKGVVSEELLTHAQVVLLSNKIKAGLLLEDHKSRLKERIGSEPTDEQVAASL 318
Query: 78 KISRSELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEK 137
++SR+EL++K IEC+LARE+LAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEK
Sbjct: 319 RMSRAELQSKLIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEK 378
Query: 138 FDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRLEERGITPT 197
FDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLP+HLHERLSLIR AK RLEE+GITP+
Sbjct: 379 FDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPSHLHERLSLIRNAKIRLEEKGITPS 438
Query: 198 IDRIAKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHG 257
IDRIA+ LNMSQKKVRNATEAISKVFSLDREAFPSLNGLPG+T H YIAD RLEN PWHG
Sbjct: 439 IDRIAECLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGETLHSYIADVRLENNPWHG 498
Query: 258 VDEWTLKDEVNKLINVTLVEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 317
VDEW LKDEVNKLIN TL ERER+IIRLYYGLD ECLTWEDISKRIGLSRERVRQVGLVA
Sbjct: 499 VDEWALKDEVNKLINTTLGERERDIIRLYYGLDNECLTWEDISKRIGLSRERVRQVGLVA 558
Query: 318 LEKLKHAARKREMEAMLLKH 337
LEKLK+AARK MEAML+K+
Sbjct: 559 LEKLKNAARKGRMEAMLVKY 578
>K4BJE9_SOLLC (tr|K4BJE9) Uncharacterized protein OS=Solanum lycopersicum
GN=Solyc03g097320.2 PE=4 SV=1
Length = 509
Score = 560 bits (1442), Expect = e-157, Method: Compositional matrix adjust.
Identities = 267/329 (81%), Positives = 298/329 (90%)
Query: 9 MRSLISPELLQNRSKGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEP 68
+RS++ P+LLQNR KGYVKG+VSE+LL+H EV++LS+KIKVGL ++E KSRLKE+LGCEP
Sbjct: 181 LRSILGPDLLQNRLKGYVKGIVSEELLTHTEVLQLSKKIKVGLHVEEQKSRLKERLGCEP 240
Query: 69 SDDQIAASLKISRSELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL 128
SDDQ+A SLK+SR++L++ IEC+LARERL+MSNVRLVMSIAQRYDNMGAEMADLVQGGL
Sbjct: 241 SDDQLAVSLKMSRTDLQSTLIECSLARERLSMSNVRLVMSIAQRYDNMGAEMADLVQGGL 300
Query: 129 IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFR 188
IGLLRGIEKFD SKG+KISTYVYWWIRQGVSR LVENSRTLRLPTHLHERL LIR AK R
Sbjct: 301 IGLLRGIEKFDPSKGYKISTYVYWWIRQGVSRTLVENSRTLRLPTHLHERLGLIRNAKMR 360
Query: 189 LEERGITPTIDRIAKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADN 248
LEE+GI P+++ IA SLNMSQKKVRNATEA SKV+SLDRE FPSLNGLPG T H YIADN
Sbjct: 361 LEEKGINPSVNNIAASLNMSQKKVRNATEASSKVYSLDREVFPSLNGLPGTTLHSYIADN 420
Query: 249 RLENIPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDKECLTWEDISKRIGLSRE 308
LEN PWHGVD W LKDEVN LI+ TL EREREIIRLYYGLD ECLTWEDISKRIGLSRE
Sbjct: 421 HLENNPWHGVDVWALKDEVNNLISSTLREREREIIRLYYGLDSECLTWEDISKRIGLSRE 480
Query: 309 RVRQVGLVALEKLKHAARKREMEAMLLKH 337
RVRQVGLVALEKLKHAARKR ++AML+K
Sbjct: 481 RVRQVGLVALEKLKHAARKRRLDAMLIKQ 509
>B9I6T5_POPTR (tr|B9I6T5) Predicted protein OS=Populus trichocarpa
GN=POPTRDRAFT_730207 PE=4 SV=1
Length = 499
Score = 558 bits (1439), Expect = e-157, Method: Compositional matrix adjust.
Identities = 267/325 (82%), Positives = 300/325 (92%)
Query: 13 ISPELLQNRSKGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQ 72
ISP LL NR KGYVKGVVS+++L H EVV+LS I+ GLSL++HKS LKE+LGCEPSD+Q
Sbjct: 175 ISPGLLLNRLKGYVKGVVSDEVLPHTEVVRLSRIIRAGLSLEDHKSSLKERLGCEPSDEQ 234
Query: 73 IAASLKISRSELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLL 132
+A SL+ISR++L+++ I+C+LARE+LAMSNVRLVMSIAQ+ DNMGAEMADLVQ GLIGLL
Sbjct: 235 LADSLRISRADLQSQLIQCSLAREKLAMSNVRLVMSIAQKNDNMGAEMADLVQAGLIGLL 294
Query: 133 RGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRLEER 192
RGIEKFDSSKGFKISTYVYWWIRQGVSRALVEN RTLRLP HLHERL LIR AK RLEE+
Sbjct: 295 RGIEKFDSSKGFKISTYVYWWIRQGVSRALVENPRTLRLPNHLHERLGLIRNAKIRLEEK 354
Query: 193 GITPTIDRIAKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLEN 252
G+TP+IDRIA+SLNMSQ+KVRNATEAISKVFSLDREAFPSLNGLPG+THH YIADNRLEN
Sbjct: 355 GVTPSIDRIAESLNMSQRKVRNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNRLEN 414
Query: 253 IPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQ 312
PWHGVDEW LK+EVNKLI+ L EREREIIRLY+GLDKECLTWEDISKR+GLSRERVRQ
Sbjct: 415 NPWHGVDEWALKEEVNKLIDSALQEREREIIRLYHGLDKECLTWEDISKRMGLSRERVRQ 474
Query: 313 VGLVALEKLKHAARKREMEAMLLKH 337
VGLVALEKLKHAARK ++EAML+KH
Sbjct: 475 VGLVALEKLKHAARKGKLEAMLVKH 499
>O49935_SINAL (tr|O49935) Sig1 protein OS=Sinapis alba GN=Sig1 PE=2 SV=1
Length = 481
Score = 558 bits (1439), Expect = e-157, Method: Compositional matrix adjust.
Identities = 268/319 (84%), Positives = 298/319 (93%)
Query: 19 QNRSKGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLK 78
N KGYVKGV+S+ +LSHAEVV+LS+KIK GL LDEHKSRL ++LGCEPSD+Q+A SLK
Sbjct: 163 NNLVKGYVKGVISDHVLSHAEVVRLSKKIKSGLRLDEHKSRLTDRLGCEPSDEQLAMSLK 222
Query: 79 ISRSELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKF 138
ISR+EL+A +EC LARE+LAMSNVRLVMSIAQRYDNMGAEM+DLVQGGLIGLLRGIEKF
Sbjct: 223 ISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNMGAEMSDLVQGGLIGLLRGIEKF 282
Query: 139 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRLEERGITPTI 198
DSSKGF+ISTYVYWWIRQGVSRALV+NSRTLRLPTHLHERL LIR AK RL+E+GITP+I
Sbjct: 283 DSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQEKGITPSI 342
Query: 199 DRIAKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGV 258
DRIA+SLNMSQKKVRNATEA+SK+FSLDR+AFPSLNGLPG+THH YIADNRLEN PWHG
Sbjct: 343 DRIAESLNMSQKKVRNATEAVSKIFSLDRDAFPSLNGLPGETHHSYIADNRLENNPWHGY 402
Query: 259 DEWTLKDEVNKLINVTLVEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVAL 318
D LKDEV+KLI+VTL EREREIIRLYYGLDKECLTWEDIS+RIGLSRERVRQVGLVAL
Sbjct: 403 DALALKDEVSKLISVTLGEREREIIRLYYGLDKECLTWEDISQRIGLSRERVRQVGLVAL 462
Query: 319 EKLKHAARKREMEAMLLKH 337
EKLKHAARKR+MEAM+LK+
Sbjct: 463 EKLKHAARKRKMEAMILKN 481
>D7KZ14_ARALL (tr|D7KZ14) RNA polymerase sigma subunit 1 OS=Arabidopsis lyrata
subsp. lyrata GN=ARALYDRAFT_893809 PE=4 SV=1
Length = 503
Score = 555 bits (1430), Expect = e-156, Method: Compositional matrix adjust.
Identities = 264/315 (83%), Positives = 298/315 (94%)
Query: 23 KGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRS 82
+GYVKGV+SE +LSHAEVV+LS+KIK GL LD+HKSRLK++LGCEPSD+Q+A SLKISR+
Sbjct: 189 RGYVKGVISEDVLSHAEVVRLSKKIKSGLRLDDHKSRLKDRLGCEPSDEQLAVSLKISRA 248
Query: 83 ELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSK 142
EL+A +EC LARE+LAMSNVRLVMSIAQRYDN+GAEM+DLVQGGLIGLLRGIEKFDSSK
Sbjct: 249 ELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSK 308
Query: 143 GFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRLEERGITPTIDRIA 202
GF+ISTYVYWWIRQGVSRALV+NSRTLRLPTHLHERL LIR AK RL+E+GITP+IDRIA
Sbjct: 309 GFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQEKGITPSIDRIA 368
Query: 203 KSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWT 262
+SLNMSQKKVRNATEA+SK+FSLDR+AFPSLNGLPG+THH YIADNR+EN PWHG D+
Sbjct: 369 ESLNMSQKKVRNATEAVSKIFSLDRDAFPSLNGLPGETHHSYIADNRVENNPWHGYDDLA 428
Query: 263 LKDEVNKLINVTLVEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLK 322
LK+EV+KLI+ TL EREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLK
Sbjct: 429 LKEEVSKLISATLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLK 488
Query: 323 HAARKREMEAMLLKH 337
HAARKR+MEAM+LK+
Sbjct: 489 HAARKRKMEAMILKN 503
>M1CIG4_SOLTU (tr|M1CIG4) Uncharacterized protein OS=Solanum tuberosum
GN=PGSC0003DMG400026491 PE=4 SV=1
Length = 391
Score = 555 bits (1429), Expect = e-155, Method: Compositional matrix adjust.
Identities = 266/329 (80%), Positives = 298/329 (90%)
Query: 9 MRSLISPELLQNRSKGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEP 68
+RS+I PELLQNR KGYVKGVVS++LL+H EV++LS+KI+VGL ++E KSRLK++LGCEP
Sbjct: 63 LRSIIGPELLQNRLKGYVKGVVSDELLTHTEVLQLSKKIQVGLHVEEQKSRLKDRLGCEP 122
Query: 69 SDDQIAASLKISRSELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL 128
SDDQ+A SLK+ R++L++ IEC+LARERL+MSNVRLVMSIAQRYDNMGAEMADLVQGGL
Sbjct: 123 SDDQLALSLKMPRTDLQSTLIECSLARERLSMSNVRLVMSIAQRYDNMGAEMADLVQGGL 182
Query: 129 IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFR 188
IGLLRGIEKFD SKG+KISTYVYWWIRQGVSR LVENSRTLRLPTHLHERL LIR AK R
Sbjct: 183 IGLLRGIEKFDPSKGYKISTYVYWWIRQGVSRTLVENSRTLRLPTHLHERLGLIRNAKMR 242
Query: 189 LEERGITPTIDRIAKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADN 248
LEE+GITP+++ IA SLNMSQKKVRNATEA SKV+SLDRE FPSLNGLPG T H YIADN
Sbjct: 243 LEEKGITPSVNNIAASLNMSQKKVRNATEASSKVYSLDREVFPSLNGLPGATLHSYIADN 302
Query: 249 RLENIPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDKECLTWEDISKRIGLSRE 308
LEN PWHGVD W LKDEVN LI+ +L EREREIIRLYYGLD ECLTWEDISKRIGLSRE
Sbjct: 303 HLENNPWHGVDTWALKDEVNNLISSSLREREREIIRLYYGLDSECLTWEDISKRIGLSRE 362
Query: 309 RVRQVGLVALEKLKHAARKREMEAMLLKH 337
RVRQVGLVALEKLKHAARKR ++AML+K
Sbjct: 363 RVRQVGLVALEKLKHAARKRRLDAMLIKQ 391
>I1L5H2_SOYBN (tr|I1L5H2) Uncharacterized protein OS=Glycine max PE=4 SV=1
Length = 468
Score = 551 bits (1421), Expect = e-154, Method: Compositional matrix adjust.
Identities = 264/302 (87%), Positives = 285/302 (94%)
Query: 1 MQACDAMQMRSLISPELLQNRSKGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRL 60
++ C AMQ++S ISPELLQ+R KGYVKG+VSE+LLSHAEVV LSE+IKVGLSL+EHKSRL
Sbjct: 167 IKTCGAMQLKSKISPELLQHRLKGYVKGIVSEELLSHAEVVNLSERIKVGLSLEEHKSRL 226
Query: 61 KEKLGCEPSDDQIAASLKISRSELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEM 120
KE+LGCEPSDDQ+A SLKISR+ELRA+ IECTLARE+LAMSNVRLVMSIAQ+YDN+GAEM
Sbjct: 227 KERLGCEPSDDQMAISLKISRTELRARMIECTLAREKLAMSNVRLVMSIAQKYDNLGAEM 286
Query: 121 ADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLS 180
DLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLP HLHERLS
Sbjct: 287 GDLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPAHLHERLS 346
Query: 181 LIRTAKFRLEERGITPTIDRIAKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDT 240
LIR AKFRLEERGITPTIDRIAK LNMSQKKVRNATEAISK SLDREAFPSLNG+ G+T
Sbjct: 347 LIRNAKFRLEERGITPTIDRIAKYLNMSQKKVRNATEAISKTISLDREAFPSLNGIQGET 406
Query: 241 HHCYIADNRLENIPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDKECLTWEDIS 300
HH YIAD+R+ENIPW+GVDEW LKDEVNKLINVTLVEREREIIRLYYGLDKE LTWEDIS
Sbjct: 407 HHSYIADDRVENIPWNGVDEWALKDEVNKLINVTLVEREREIIRLYYGLDKEGLTWEDIS 466
Query: 301 KR 302
KR
Sbjct: 467 KR 468
>M1CKN6_SOLTU (tr|M1CKN6) Uncharacterized protein OS=Solanum tuberosum
GN=PGSC0003DMG400027038 PE=4 SV=1
Length = 505
Score = 544 bits (1401), Expect = e-152, Method: Compositional matrix adjust.
Identities = 256/330 (77%), Positives = 300/330 (90%)
Query: 8 QMRSLISPELLQNRSKGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCE 67
++RS++ PEL QNR +GY+KGVV+++LL+H EVV+LS+KIK GL L+E K+ LKE+LGCE
Sbjct: 176 RLRSVVGPELQQNRLRGYMKGVVNQELLTHKEVVQLSKKIKFGLYLEEQKASLKERLGCE 235
Query: 68 PSDDQIAASLKISRSELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGG 127
PSDDQ+A SLK+S ++LR+ +EC+LARE+LAMSNVRLVMSIAQRYD+MG EMADL+QGG
Sbjct: 236 PSDDQLAVSLKMSLADLRSTLMECSLAREKLAMSNVRLVMSIAQRYDSMGTEMADLIQGG 295
Query: 128 LIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKF 187
LIGLLRGIEKFD S+GFKISTYVYWWIRQGVSRALV+NSRTLRLP HLHERLSLIR AK
Sbjct: 296 LIGLLRGIEKFDHSRGFKISTYVYWWIRQGVSRALVDNSRTLRLPIHLHERLSLIRNAKV 355
Query: 188 RLEERGITPTIDRIAKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIAD 247
+L++ GITP+I++IA+ LNMSQKKVRNATEA SKVFSLDREA+PSLNGLPG T H YIAD
Sbjct: 356 KLKDNGITPSIEKIAECLNMSQKKVRNATEASSKVFSLDREAYPSLNGLPGATLHSYIAD 415
Query: 248 NRLENIPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDKECLTWEDISKRIGLSR 307
NRLEN PWHGVD W LKDEVN LI+ TL ERER+I+RLYYGLD ECLTWEDIS+RIGLSR
Sbjct: 416 NRLENNPWHGVDGWALKDEVNNLISSTLRERERDIVRLYYGLDNECLTWEDISRRIGLSR 475
Query: 308 ERVRQVGLVALEKLKHAARKREMEAMLLKH 337
ERVRQVGLVALEKLKHAARK++++AML+KH
Sbjct: 476 ERVRQVGLVALEKLKHAARKKQLDAMLVKH 505
>K4C8Z1_SOLLC (tr|K4C8Z1) Uncharacterized protein OS=Solanum lycopersicum
GN=Solyc06g072710.2 PE=4 SV=1
Length = 505
Score = 540 bits (1390), Expect = e-151, Method: Compositional matrix adjust.
Identities = 255/330 (77%), Positives = 298/330 (90%)
Query: 8 QMRSLISPELLQNRSKGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCE 67
++RS++ PEL QNR +GY+ GVV+++LL+H EVV+LS+KIK GL L+E K+ LKE+LGCE
Sbjct: 176 RLRSVVGPELQQNRLRGYMNGVVNQELLTHKEVVQLSKKIKFGLYLEEQKASLKERLGCE 235
Query: 68 PSDDQIAASLKISRSELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGG 127
PSDDQ+A SLK+S ++LR+ +EC+LARE+LAMSNVRLVMSIAQRYD+MG EMADL+QGG
Sbjct: 236 PSDDQLAVSLKMSLADLRSTLMECSLAREKLAMSNVRLVMSIAQRYDSMGTEMADLIQGG 295
Query: 128 LIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKF 187
LIGLLRGIEKFD S+GFKISTYVYWWIRQGVSRALV+NSRTLRLP HLHERLSLIR AK
Sbjct: 296 LIGLLRGIEKFDHSRGFKISTYVYWWIRQGVSRALVDNSRTLRLPIHLHERLSLIRNAKV 355
Query: 188 RLEERGITPTIDRIAKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIAD 247
+L++ GITP+I++IA+ LNMSQKKVRNATEA SKVFSLDREA+PSLNGLPG T H YIAD
Sbjct: 356 KLKDSGITPSIEKIAECLNMSQKKVRNATEASSKVFSLDREAYPSLNGLPGATLHSYIAD 415
Query: 248 NRLENIPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDKECLTWEDISKRIGLSR 307
NRLEN PWHGVD W LKDEVN LI+ L ERER+IIRLYYGLD ECLTWEDIS+RIGLSR
Sbjct: 416 NRLENNPWHGVDGWALKDEVNNLISSILRERERDIIRLYYGLDNECLTWEDISRRIGLSR 475
Query: 308 ERVRQVGLVALEKLKHAARKREMEAMLLKH 337
ERVRQVGLVALEKLKHAARK++++AML+KH
Sbjct: 476 ERVRQVGLVALEKLKHAARKKQLDAMLVKH 505
>M1CIG2_SOLTU (tr|M1CIG2) Uncharacterized protein OS=Solanum tuberosum
GN=PGSC0003DMG400026491 PE=4 SV=1
Length = 610
Score = 514 bits (1324), Expect = e-143, Method: Compositional matrix adjust.
Identities = 250/329 (75%), Positives = 282/329 (85%), Gaps = 18/329 (5%)
Query: 9 MRSLISPELLQNRSKGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEP 68
+RS+I PELLQNR KGYVKGVVS++LL+H EV++LS+KI+VGL ++E KSRLK++LGCEP
Sbjct: 300 LRSIIGPELLQNRLKGYVKGVVSDELLTHTEVLQLSKKIQVGLHVEEQKSRLKDRLGCEP 359
Query: 69 SDDQIAASLKISRSELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL 128
SDDQ+A SLK+ R++L++ IEC+LARERL+MSNVRLVMSIAQRYDNMGAEMADLVQGGL
Sbjct: 360 SDDQLALSLKMPRTDLQSTLIECSLARERLSMSNVRLVMSIAQRYDNMGAEMADLVQGGL 419
Query: 129 IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFR 188
IGLLRGIEKFD SKG+KISTYVYWWIRQGVSR LVENSRTLRLPTHLHERL LIR AK R
Sbjct: 420 IGLLRGIEKFDPSKGYKISTYVYWWIRQGVSRTLVENSRTLRLPTHLHERLGLIRNAKMR 479
Query: 189 LEERGITPTIDRIAKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADN 248
LEE+GITP+++ A SKV+SLDRE FPSLNGLPG T H YIADN
Sbjct: 480 LEEKGITPSVN------------------ASSKVYSLDREVFPSLNGLPGATLHSYIADN 521
Query: 249 RLENIPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDKECLTWEDISKRIGLSRE 308
LEN PWHGVD W LKDEVN LI+ +L EREREIIRLYYGLD ECLTWEDISKRIGLSRE
Sbjct: 522 HLENNPWHGVDTWALKDEVNNLISSSLREREREIIRLYYGLDSECLTWEDISKRIGLSRE 581
Query: 309 RVRQVGLVALEKLKHAARKREMEAMLLKH 337
RVRQVGLVALEKLKHAARKR ++AML+K
Sbjct: 582 RVRQVGLVALEKLKHAARKRRLDAMLIKQ 610
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 72/98 (73%), Positives = 86/98 (87%)
Query: 59 RLKEKLGCEPSDDQIAASLKISRSELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGA 118
RLKE+LGCE S Q++ SLK+SR++LR+ IEC+LARER +MS++RLVMSIAQRYDNMG
Sbjct: 5 RLKERLGCETSYYQLSLSLKLSRTDLRSTLIECSLARERFSMSSIRLVMSIAQRYDNMGP 64
Query: 119 EMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQ 156
EM DLV+GGL+GLL GIEKFD SKG+KI TYVYWWIRQ
Sbjct: 65 EMTDLVRGGLVGLLHGIEKFDPSKGYKIPTYVYWWIRQ 102
>M0RQD1_MUSAM (tr|M0RQD1) Uncharacterized protein OS=Musa acuminata subsp.
malaccensis PE=4 SV=1
Length = 459
Score = 513 bits (1320), Expect = e-143, Method: Compositional matrix adjust.
Identities = 240/330 (72%), Positives = 287/330 (86%)
Query: 8 QMRSLISPELLQNRSKGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCE 67
Q+RS +SPELL + + GYV+G VSE LL+HAEVV LS+KI+ G+ ++EH+SRLKEK+G E
Sbjct: 130 QLRSCVSPELLNSDASGYVRGTVSESLLTHAEVVNLSKKIRAGMRVEEHRSRLKEKMGYE 189
Query: 68 PSDDQIAASLKISRSELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGG 127
P+D Q+A+SL++SR+EL K IEC+LARE+LAMSNVRLVMSIAQ+YDNMG MADL+QGG
Sbjct: 190 PTDKQLASSLRMSRAELHTKMIECSLAREKLAMSNVRLVMSIAQKYDNMGTAMADLIQGG 249
Query: 128 LIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKF 187
LIGLLRGIEKFD+SKGFKISTYVYWWIRQGV+R L +NSRTLRLP HLHERL IR AK
Sbjct: 250 LIGLLRGIEKFDASKGFKISTYVYWWIRQGVTRTLFKNSRTLRLPAHLHERLGSIRHAKI 309
Query: 188 RLEERGITPTIDRIAKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIAD 247
RLEE+GI P+ID++A+SLNMSQKKVRNAT+A S V S+DREAFPSLNGLPG T H YIAD
Sbjct: 310 RLEEKGIAPSIDKLAESLNMSQKKVRNATQAASIVLSIDREAFPSLNGLPGKTLHSYIAD 369
Query: 248 NRLENIPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDKECLTWEDISKRIGLSR 307
LEN PWHG +EW+LKDEV+KL+ +TL RER+II LY+G+D EC TWEDI K+ GLSR
Sbjct: 370 RNLENNPWHGFEEWSLKDEVDKLLYMTLSNRERDIISLYHGIDNECHTWEDIGKKFGLSR 429
Query: 308 ERVRQVGLVALEKLKHAARKREMEAMLLKH 337
ERVRQVGLVA+EKLKHAAR+R++EAML+K
Sbjct: 430 ERVRQVGLVAMEKLKHAARRRKLEAMLVKQ 459
>M0RYS9_MUSAM (tr|M0RYS9) Uncharacterized protein OS=Musa acuminata subsp.
malaccensis PE=4 SV=1
Length = 423
Score = 496 bits (1278), Expect = e-138, Method: Compositional matrix adjust.
Identities = 233/330 (70%), Positives = 285/330 (86%)
Query: 8 QMRSLISPELLQNRSKGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCE 67
Q+ +S ELL++ GYV+G VSE LL+HAEV LS+ IK G+ + E +++L++KLG E
Sbjct: 94 QLHPSVSRELLKSDISGYVRGTVSENLLTHAEVANLSKTIKAGIHIQEQRAKLQDKLGFE 153
Query: 68 PSDDQIAASLKISRSELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGG 127
P+D Q+A+SL++SR+EL K IE +LARE+LAMSNVRLVMSIAQ+YDN+GAEM DL+Q G
Sbjct: 154 PTDRQLASSLRMSRAELHTKMIESSLAREKLAMSNVRLVMSIAQKYDNLGAEMTDLIQAG 213
Query: 128 LIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKF 187
LIGLLRGIEKFDSSKGF+ISTYVYWWIRQGVSRAL +NSRTLRLPTHLHERLS IR AK
Sbjct: 214 LIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALFKNSRTLRLPTHLHERLSSIRHAKI 273
Query: 188 RLEERGITPTIDRIAKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIAD 247
RLEE+GITP+ID++A++LNMSQKK+R+AT+A SKV SLDREAFPSLNGLPG+T H YIAD
Sbjct: 274 RLEEKGITPSIDKLAETLNMSQKKIRDATQAASKVLSLDREAFPSLNGLPGETLHSYIAD 333
Query: 248 NRLENIPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDKECLTWEDISKRIGLSR 307
+EN PW+G +EW+LKDEV KL+ TL +REREIIRLY+G+D EC TWEDI KR GLSR
Sbjct: 334 RNVENNPWYGFEEWSLKDEVKKLLYTTLSKREREIIRLYHGIDSECHTWEDIGKRFGLSR 393
Query: 308 ERVRQVGLVALEKLKHAARKREMEAMLLKH 337
ERVRQVGL+A+EKLKH AR+R++EA+L+KH
Sbjct: 394 ERVRQVGLIAMEKLKHVARRRKLEAVLVKH 423
>O48655_ORYSJ (tr|O48655) Plastid RNA polymerase sigma factor OS=Oryza sativa
subsp. japonica GN=rsigA PE=2 SV=1
Length = 519
Score = 463 bits (1192), Expect = e-128, Method: Compositional matrix adjust.
Identities = 218/322 (67%), Positives = 274/322 (85%)
Query: 13 ISPELLQNRSKGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQ 72
+SPEL+Q+R++ Y++G VS++LL+H +VV LS KIK G+ L + +S+LKEKLG EPS Q
Sbjct: 195 VSPELIQSRNRIYLRGTVSKELLTHKQVVHLSHKIKDGIWLQQQRSKLKEKLGNEPSYKQ 254
Query: 73 IAASLKISRSELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLL 132
+A SLKIS ELR++ E LARE L MSN+RLV+SIAQ+YDN+G E+ADL+QGGLIGLL
Sbjct: 255 LAHSLKISPPELRSRMHESFLAREMLTMSNLRLVISIAQKYDNLGVELADLIQGGLIGLL 314
Query: 133 RGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRLEER 192
RGIEKFD+S+GF+ISTYVYWWIRQGVSRAL ENS+T RLPT+LHERL IR AK+ LE++
Sbjct: 315 RGIEKFDASRGFRISTYVYWWIRQGVSRALAENSKTFRLPTYLHERLIAIRGAKYELEDQ 374
Query: 193 GITPTIDRIAKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLEN 252
GI PTI+ IA SLN+S+KKV NATEA++KV SLD++AFPSLNGLPG+T H YI D + N
Sbjct: 375 GIAPTIENIAGSLNISEKKVLNATEAVNKVLSLDQQAFPSLNGLPGETLHSYIEDQNVAN 434
Query: 253 IPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQ 312
PWHG +EW LK+EVNKL+N TL ERER+IIRLY+G+ K+C TWEDIS++ GLSRERVRQ
Sbjct: 435 DPWHGFEEWYLKEEVNKLLNSTLNERERDIIRLYHGIGKQCHTWEDISRQFGLSRERVRQ 494
Query: 313 VGLVALEKLKHAARKREMEAML 334
VGL+A+EKLKHAAR++ +EA+L
Sbjct: 495 VGLIAMEKLKHAARRKNLEALL 516
>Q0J7T6_ORYSJ (tr|Q0J7T6) Os08g0163400 protein OS=Oryza sativa subsp. japonica
GN=Os08g0163400 PE=2 SV=2
Length = 520
Score = 463 bits (1192), Expect = e-128, Method: Compositional matrix adjust.
Identities = 218/322 (67%), Positives = 274/322 (85%)
Query: 13 ISPELLQNRSKGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQ 72
+SPEL+Q+R++ Y++G VS++LL+H +VV LS KIK G+ L + +S+LKEKLG EPS Q
Sbjct: 196 VSPELIQSRNRIYLRGTVSKELLTHKQVVHLSHKIKDGIWLQQQRSKLKEKLGNEPSYKQ 255
Query: 73 IAASLKISRSELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLL 132
+A SLKIS ELR++ E LARE L MSN+RLV+SIAQ+YDN+G E+ADL+QGGLIGLL
Sbjct: 256 LAHSLKISPPELRSRMHESFLAREMLTMSNLRLVISIAQKYDNLGVELADLIQGGLIGLL 315
Query: 133 RGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRLEER 192
RGIEKFD+S+GF+ISTYVYWWIRQGVSRAL ENS+T RLPT+LHERL IR AK+ LE++
Sbjct: 316 RGIEKFDASRGFRISTYVYWWIRQGVSRALAENSKTFRLPTYLHERLIAIRGAKYELEDQ 375
Query: 193 GITPTIDRIAKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLEN 252
GI PTI+ IA SLN+S+KKV NATEA++KV SLD++AFPSLNGLPG+T H YI D + N
Sbjct: 376 GIAPTIENIAGSLNISEKKVLNATEAVNKVLSLDQQAFPSLNGLPGETLHSYIEDQNVAN 435
Query: 253 IPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQ 312
PWHG +EW LK+EVNKL+N TL ERER+IIRLY+G+ K+C TWEDIS++ GLSRERVRQ
Sbjct: 436 DPWHGFEEWYLKEEVNKLLNSTLNERERDIIRLYHGIGKQCHTWEDISRQFGLSRERVRQ 495
Query: 313 VGLVALEKLKHAARKREMEAML 334
VGL+A+EKLKHAAR++ +EA+L
Sbjct: 496 VGLIAMEKLKHAARRKNLEALL 517
>I1QFY1_ORYGL (tr|I1QFY1) Uncharacterized protein OS=Oryza glaberrima PE=4 SV=1
Length = 528
Score = 463 bits (1191), Expect = e-128, Method: Compositional matrix adjust.
Identities = 218/322 (67%), Positives = 274/322 (85%)
Query: 13 ISPELLQNRSKGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQ 72
+SPEL+Q+R++ Y++G VS++LL+H +VV LS KIK G+ L + +S+LKEKLG EPS Q
Sbjct: 204 VSPELIQSRNRIYLRGTVSKELLTHKQVVHLSHKIKDGIWLQQQRSKLKEKLGNEPSYKQ 263
Query: 73 IAASLKISRSELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLL 132
+A SLKIS ELR++ E LARE L MSN+RLV+SIAQ+YDN+G E+ADL+QGGLIGLL
Sbjct: 264 LAHSLKISPPELRSRMHESFLAREMLTMSNLRLVISIAQKYDNLGVELADLIQGGLIGLL 323
Query: 133 RGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRLEER 192
RGIEKFD+S+GF+ISTYVYWWIRQGVSRAL ENS+T RLPT+LHERL IR AK+ LE++
Sbjct: 324 RGIEKFDASRGFRISTYVYWWIRQGVSRALAENSKTFRLPTYLHERLIAIRGAKYALEDQ 383
Query: 193 GITPTIDRIAKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLEN 252
GI PTI+ IA SLN+S+KKV NATEA++KV SLD++AFPSLNGLPG+T H YI D + N
Sbjct: 384 GIAPTIENIAGSLNISEKKVLNATEAVNKVLSLDQQAFPSLNGLPGETLHSYIEDQNVAN 443
Query: 253 IPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQ 312
PWHG +EW LK+EVNKL+N TL ERER+IIRLY+G+ K+C TWEDIS++ GLSRERVRQ
Sbjct: 444 DPWHGFEEWYLKEEVNKLLNSTLNERERDIIRLYHGIGKQCHTWEDISRQFGLSRERVRQ 503
Query: 313 VGLVALEKLKHAARKREMEAML 334
VGL+A+EKLKHAAR++ +EA+L
Sbjct: 504 VGLIAMEKLKHAARRKNLEALL 525
>A3BPX7_ORYSJ (tr|A3BPX7) Putative uncharacterized protein OS=Oryza sativa subsp.
japonica GN=OsJ_26150 PE=2 SV=1
Length = 420
Score = 462 bits (1188), Expect = e-128, Method: Compositional matrix adjust.
Identities = 218/322 (67%), Positives = 274/322 (85%)
Query: 13 ISPELLQNRSKGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQ 72
+SPEL+Q+R++ Y++G VS++LL+H +VV LS KIK G+ L + +S+LKEKLG EPS Q
Sbjct: 96 VSPELIQSRNRIYLRGTVSKELLTHKQVVHLSHKIKDGIWLQQQRSKLKEKLGNEPSYKQ 155
Query: 73 IAASLKISRSELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLL 132
+A SLKIS ELR++ E LARE L MSN+RLV+SIAQ+YDN+G E+ADL+QGGLIGLL
Sbjct: 156 LAHSLKISPPELRSRMHESFLAREMLTMSNLRLVISIAQKYDNLGVELADLIQGGLIGLL 215
Query: 133 RGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRLEER 192
RGIEKFD+S+GF+ISTYVYWWIRQGVSRAL ENS+T RLPT+LHERL IR AK+ LE++
Sbjct: 216 RGIEKFDASRGFRISTYVYWWIRQGVSRALAENSKTFRLPTYLHERLIAIRGAKYELEDQ 275
Query: 193 GITPTIDRIAKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLEN 252
GI PTI+ IA SLN+S+KKV NATEA++KV SLD++AFPSLNGLPG+T H YI D + N
Sbjct: 276 GIAPTIENIAGSLNISEKKVLNATEAVNKVLSLDQQAFPSLNGLPGETLHSYIEDQNVAN 335
Query: 253 IPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQ 312
PWHG +EW LK+EVNKL+N TL ERER+IIRLY+G+ K+C TWEDIS++ GLSRERVRQ
Sbjct: 336 DPWHGFEEWYLKEEVNKLLNSTLNERERDIIRLYHGIGKQCHTWEDISRQFGLSRERVRQ 395
Query: 313 VGLVALEKLKHAARKREMEAML 334
VGL+A+EKLKHAAR++ +EA+L
Sbjct: 396 VGLIAMEKLKHAARRKNLEALL 417
>A2YRJ0_ORYSI (tr|A2YRJ0) Putative uncharacterized protein OS=Oryza sativa subsp.
indica GN=OsI_27933 PE=2 SV=1
Length = 372
Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust.
Identities = 218/322 (67%), Positives = 274/322 (85%)
Query: 13 ISPELLQNRSKGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQ 72
+SPEL+Q+R++ Y++G VS++LL+H +VV LS KIK G+ L + +S+LKEKLG EPS Q
Sbjct: 48 VSPELIQSRNRIYLRGTVSKELLTHKQVVHLSHKIKDGIWLQQQRSKLKEKLGNEPSYKQ 107
Query: 73 IAASLKISRSELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLL 132
+A SLKIS ELR++ E LARE L MSN+RLV+SIAQ+YDN+G E+ADL+QGGLIGLL
Sbjct: 108 LAHSLKISPPELRSRMHESFLAREMLTMSNLRLVISIAQKYDNLGVELADLIQGGLIGLL 167
Query: 133 RGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRLEER 192
RGIEKFD+S+GF+ISTYVYWWIRQGVSRAL ENS+T RLPT+LHERL IR AK+ LE++
Sbjct: 168 RGIEKFDASRGFRISTYVYWWIRQGVSRALAENSKTFRLPTYLHERLIAIRGAKYELEDQ 227
Query: 193 GITPTIDRIAKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLEN 252
GI PTI+ IA SLN+S+KKV NATEA++KV SLD++AFPSLNGLPG+T H YI D + N
Sbjct: 228 GIAPTIENIAGSLNISEKKVLNATEAVNKVLSLDQQAFPSLNGLPGETLHSYIEDQNVAN 287
Query: 253 IPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQ 312
PWHG +EW LK+EVNKL+N TL ERER+IIRLY+G+ K+C TWEDIS++ GLSRERVRQ
Sbjct: 288 DPWHGFEEWYLKEEVNKLLNSTLNERERDIIRLYHGIGKQCHTWEDISRQFGLSRERVRQ 347
Query: 313 VGLVALEKLKHAARKREMEAML 334
VGL+A+EKLKHAAR++ +EA+L
Sbjct: 348 VGLIAMEKLKHAARRKNLEALL 369
>Q7EY08_ORYSJ (tr|Q7EY08) Putative plastid RNA polymerase sigma factor OS=Oryza
sativa subsp. japonica GN=OJ9990_A01.116-1 PE=2 SV=1
Length = 388
Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust.
Identities = 218/322 (67%), Positives = 274/322 (85%)
Query: 13 ISPELLQNRSKGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQ 72
+SPEL+Q+R++ Y++G VS++LL+H +VV LS KIK G+ L + +S+LKEKLG EPS Q
Sbjct: 64 VSPELIQSRNRIYLRGTVSKELLTHKQVVHLSHKIKDGIWLQQQRSKLKEKLGNEPSYKQ 123
Query: 73 IAASLKISRSELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLL 132
+A SLKIS ELR++ E LARE L MSN+RLV+SIAQ+YDN+G E+ADL+QGGLIGLL
Sbjct: 124 LAHSLKISPPELRSRMHESFLAREMLTMSNLRLVISIAQKYDNLGVELADLIQGGLIGLL 183
Query: 133 RGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRLEER 192
RGIEKFD+S+GF+ISTYVYWWIRQGVSRAL ENS+T RLPT+LHERL IR AK+ LE++
Sbjct: 184 RGIEKFDASRGFRISTYVYWWIRQGVSRALAENSKTFRLPTYLHERLIAIRGAKYELEDQ 243
Query: 193 GITPTIDRIAKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLEN 252
GI PTI+ IA SLN+S+KKV NATEA++KV SLD++AFPSLNGLPG+T H YI D + N
Sbjct: 244 GIAPTIENIAGSLNISEKKVLNATEAVNKVLSLDQQAFPSLNGLPGETLHSYIEDQNVAN 303
Query: 253 IPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQ 312
PWHG +EW LK+EVNKL+N TL ERER+IIRLY+G+ K+C TWEDIS++ GLSRERVRQ
Sbjct: 304 DPWHGFEEWYLKEEVNKLLNSTLNERERDIIRLYHGIGKQCHTWEDISRQFGLSRERVRQ 363
Query: 313 VGLVALEKLKHAARKREMEAML 334
VGL+A+EKLKHAAR++ +EA+L
Sbjct: 364 VGLIAMEKLKHAARRKNLEALL 385
>Q7EY07_ORYSJ (tr|Q7EY07) Putative plastid RNA polymerase sigma factor OS=Oryza
sativa subsp. japonica GN=OJ9990_A01.116-2 PE=2 SV=1
Length = 342
Score = 461 bits (1186), Expect = e-127, Method: Compositional matrix adjust.
Identities = 218/322 (67%), Positives = 274/322 (85%)
Query: 13 ISPELLQNRSKGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQ 72
+SPEL+Q+R++ Y++G VS++LL+H +VV LS KIK G+ L + +S+LKEKLG EPS Q
Sbjct: 18 VSPELIQSRNRIYLRGTVSKELLTHKQVVHLSHKIKDGIWLQQQRSKLKEKLGNEPSYKQ 77
Query: 73 IAASLKISRSELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLL 132
+A SLKIS ELR++ E LARE L MSN+RLV+SIAQ+YDN+G E+ADL+QGGLIGLL
Sbjct: 78 LAHSLKISPPELRSRMHESFLAREMLTMSNLRLVISIAQKYDNLGVELADLIQGGLIGLL 137
Query: 133 RGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRLEER 192
RGIEKFD+S+GF+ISTYVYWWIRQGVSRAL ENS+T RLPT+LHERL IR AK+ LE++
Sbjct: 138 RGIEKFDASRGFRISTYVYWWIRQGVSRALAENSKTFRLPTYLHERLIAIRGAKYELEDQ 197
Query: 193 GITPTIDRIAKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLEN 252
GI PTI+ IA SLN+S+KKV NATEA++KV SLD++AFPSLNGLPG+T H YI D + N
Sbjct: 198 GIAPTIENIAGSLNISEKKVLNATEAVNKVLSLDQQAFPSLNGLPGETLHSYIEDQNVAN 257
Query: 253 IPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQ 312
PWHG +EW LK+EVNKL+N TL ERER+IIRLY+G+ K+C TWEDIS++ GLSRERVRQ
Sbjct: 258 DPWHGFEEWYLKEEVNKLLNSTLNERERDIIRLYHGIGKQCHTWEDISRQFGLSRERVRQ 317
Query: 313 VGLVALEKLKHAARKREMEAML 334
VGL+A+EKLKHAAR++ +EA+L
Sbjct: 318 VGLIAMEKLKHAARRKNLEALL 339
>K3YH90_SETIT (tr|K3YH90) Uncharacterized protein OS=Setaria italica
GN=Si013608m.g PE=4 SV=1
Length = 499
Score = 459 bits (1180), Expect = e-127, Method: Compositional matrix adjust.
Identities = 217/322 (67%), Positives = 273/322 (84%)
Query: 13 ISPELLQNRSKGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQ 72
ISPEL+Q+R++ Y++G VS++LL+H +VV+LS+KIK G+ L +S+LKEKLG EPS Q
Sbjct: 175 ISPELMQSRNRIYLRGTVSKELLTHKQVVQLSKKIKDGIWLQHQRSKLKEKLGNEPSYKQ 234
Query: 73 IAASLKISRSELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLL 132
+A SL+IS ELRA+ E LARE L MSN+RLV+SIAQ+YDN+G E+ADL+QGGLIGLL
Sbjct: 235 LAQSLRISAPELRARMRESFLAREMLTMSNIRLVISIAQKYDNLGVELADLIQGGLIGLL 294
Query: 133 RGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRLEER 192
RGIEKFD+S+GF+ISTYVYWWIRQGVSRAL ENS+T RLPT+LHERL IR+AK+ LE++
Sbjct: 295 RGIEKFDASRGFRISTYVYWWIRQGVSRALAENSKTFRLPTYLHERLIAIRSAKYALEDQ 354
Query: 193 GITPTIDRIAKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLEN 252
GI PT + IA SLN+S+KKV NATEA++KV SLD++AFPSLNGLPG+T H YI D + N
Sbjct: 355 GIAPTTENIAGSLNISEKKVNNATEAVNKVLSLDQQAFPSLNGLPGETLHSYIEDENVAN 414
Query: 253 IPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQ 312
PWHG +E LK+EVN LIN TL ERER+IIRLY+G+ K+C TWEDIS++ GLSRERVRQ
Sbjct: 415 DPWHGFEERYLKEEVNNLINSTLNERERDIIRLYHGIGKQCHTWEDISRQFGLSRERVRQ 474
Query: 313 VGLVALEKLKHAARKREMEAML 334
VGLVA+EKLKHAAR++ ++A+L
Sbjct: 475 VGLVAMEKLKHAARRKHLDALL 496
>C5YHG2_SORBI (tr|C5YHG2) Putative uncharacterized protein Sb07g004340 OS=Sorghum
bicolor GN=Sb07g004340 PE=4 SV=1
Length = 500
Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust.
Identities = 214/322 (66%), Positives = 270/322 (83%)
Query: 13 ISPELLQNRSKGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQ 72
+SPEL+Q+R++ Y++G VS+ LL+H +V++LS KIK G+ L +S+LKEKLG EPS Q
Sbjct: 176 VSPELMQSRNRIYLRGTVSKDLLTHKQVIQLSRKIKDGIWLQHQRSKLKEKLGNEPSYKQ 235
Query: 73 IAASLKISRSELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLL 132
+A SL IS ELRA+ E LARE L MSN+RLV+SIAQ+YDN+G E+ADL+QGGLIGLL
Sbjct: 236 LAQSLHISPPELRARMRESFLAREMLTMSNIRLVISIAQKYDNLGVELADLIQGGLIGLL 295
Query: 133 RGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRLEER 192
RGIEKFD+S+GF+ISTYVYWWIRQGVSRAL +NS+ RLPT+LHERL IR AK+ LE++
Sbjct: 296 RGIEKFDASRGFRISTYVYWWIRQGVSRALADNSKAFRLPTYLHERLIAIRGAKYALEDQ 355
Query: 193 GITPTIDRIAKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLEN 252
GI PT++ IA+SLN+S+KKV NATEA++KV SLD++AFPSLNGLPGDT H YI D + N
Sbjct: 356 GIAPTVENIAESLNISEKKVHNATEAVNKVLSLDQQAFPSLNGLPGDTLHSYIEDQNVAN 415
Query: 253 IPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQ 312
PWHG +E LK+EVN LIN TL ERER+IIRLY+G+ K+C TWEDIS++ GLSRERVRQ
Sbjct: 416 DPWHGFEERYLKEEVNNLINSTLNERERDIIRLYHGIGKQCHTWEDISRQFGLSRERVRQ 475
Query: 313 VGLVALEKLKHAARKREMEAML 334
VGLVA+EKLKHAAR++ ++A+L
Sbjct: 476 VGLVAMEKLKHAARRKHLDALL 497
>K7UB44_MAIZE (tr|K7UB44) RNA polymerase sigma factor 2 OS=Zea mays
GN=ZEAMMB73_517552 PE=4 SV=1
Length = 504
Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust.
Identities = 214/322 (66%), Positives = 270/322 (83%)
Query: 13 ISPELLQNRSKGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQ 72
ISPEL+Q+R++ Y++G VS+ LL+H +V++LS KIK G+ L +S+LKEKLG EPS Q
Sbjct: 180 ISPELMQSRNRIYLRGTVSKDLLTHKQVIQLSRKIKDGIWLQHQRSKLKEKLGNEPSYKQ 239
Query: 73 IAASLKISRSELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLL 132
+A SL+IS ELRA+ E LARE L MSN+RLV+SIA +YDN+G ++ADL+QGGLIGLL
Sbjct: 240 LAQSLRISAPELRARMRESFLAREMLTMSNIRLVISIAHKYDNLGVDLADLIQGGLIGLL 299
Query: 133 RGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRLEER 192
RGIEKFD+S+GF+ISTYVYWWIRQGVSRAL +NS+T RLPT+LHERL IR AK+ LE++
Sbjct: 300 RGIEKFDASRGFRISTYVYWWIRQGVSRALADNSKTFRLPTYLHERLIAIRGAKYALEDQ 359
Query: 193 GITPTIDRIAKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLEN 252
GI PTI+ IA+SLN+S+KKV NATEA++KV SLD++AFPSLNGLPGDT H YI D + N
Sbjct: 360 GIAPTIENIAESLNISEKKVHNATEAVNKVLSLDQQAFPSLNGLPGDTLHSYIEDQNVAN 419
Query: 253 IPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQ 312
PWHG +E LK+EVN LIN L ERER+IIRLY+G+ K+C TWEDIS++ GLSRERVRQ
Sbjct: 420 DPWHGFEEMYLKEEVNNLINSNLNERERDIIRLYHGIGKQCHTWEDISRQFGLSRERVRQ 479
Query: 313 VGLVALEKLKHAARKREMEAML 334
VGLVA+EKLKHAAR++ ++A+L
Sbjct: 480 VGLVAMEKLKHAARRKHLDALL 501
>J3MQN6_ORYBR (tr|J3MQN6) Uncharacterized protein OS=Oryza brachyantha
GN=OB08G14150 PE=4 SV=1
Length = 554
Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust.
Identities = 214/322 (66%), Positives = 274/322 (85%)
Query: 13 ISPELLQNRSKGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQ 72
+SPEL+Q+R++ Y++G VS++LL+H +VV LS KIK G+ L + +S+LKEKLG EPS Q
Sbjct: 230 VSPELMQSRNRIYLRGTVSKELLTHKQVVHLSNKIKDGIWLQQQRSKLKEKLGNEPSYKQ 289
Query: 73 IAASLKISRSELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLL 132
+A SLKIS ELR++ E LARE L MSN+RLV+SIAQ+YDN+G E+ADL+QGGLIGLL
Sbjct: 290 LAHSLKISPPELRSRMRESFLAREMLTMSNIRLVISIAQKYDNLGVELADLIQGGLIGLL 349
Query: 133 RGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRLEER 192
RGIEKFD+S+GF+ISTYVYWWIRQGVSRAL ENS+T RLPT+LHERL IR+AK+ LE++
Sbjct: 350 RGIEKFDASRGFRISTYVYWWIRQGVSRALAENSKTFRLPTYLHERLIAIRSAKYALEDQ 409
Query: 193 GITPTIDRIAKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLEN 252
GI PTI+ IA+SLN+S+KKV NAT A++KV SLD++AFPSLNGLPG+T H YI D + N
Sbjct: 410 GIAPTIENIAESLNISEKKVHNATGAVNKVLSLDQQAFPSLNGLPGETLHSYIEDQNVAN 469
Query: 253 IPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQ 312
PW+G +E LK+EVNKL+N TL ERER+IIRLY+G+ K+C TWEDIS++ GLSRERVRQ
Sbjct: 470 DPWYGFEEQYLKEEVNKLLNSTLNERERDIIRLYHGIGKQCHTWEDISRQFGLSRERVRQ 529
Query: 313 VGLVALEKLKHAARKREMEAML 334
+GL+A+EKLKHAAR++ M+A+L
Sbjct: 530 LGLIAMEKLKHAARRKNMDALL 551
>M7Y829_TRIUA (tr|M7Y829) RNA polymerase sigma factor rpoD OS=Triticum urartu
GN=TRIUR3_34525 PE=4 SV=1
Length = 508
Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust.
Identities = 210/322 (65%), Positives = 272/322 (84%)
Query: 13 ISPELLQNRSKGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQ 72
ISPELLQ+R++ Y++G VS++LL+H +VV LS+KIK G+ L + +S+LKEKLG EPS Q
Sbjct: 184 ISPELLQSRNRIYLRGTVSKELLTHKQVVHLSKKIKDGIWLQQQRSKLKEKLGNEPSYKQ 243
Query: 73 IAASLKISRSELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLL 132
+A SL+IS ELR++ E LARE L MSN+RLV+SIAQ+YD +G E++DL+QGGLIGLL
Sbjct: 244 MAQSLRISTPELRSRMRESFLAREVLTMSNIRLVISIAQKYDKLGVELSDLIQGGLIGLL 303
Query: 133 RGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRLEER 192
RGIEKFD+S+GF+ISTYVYWWIRQGVSRAL +NS+T RLPT+LHERL IR AK+ LE++
Sbjct: 304 RGIEKFDASRGFRISTYVYWWIRQGVSRALADNSKTFRLPTYLHERLIAIRGAKYALEDQ 363
Query: 193 GITPTIDRIAKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLEN 252
G++PT IAK LN+S+KKV NAT+A++K SLD++AFPSLNGLPGDT H YI D + N
Sbjct: 364 GVSPTTQNIAKLLNISEKKVHNATQAVNKALSLDQQAFPSLNGLPGDTLHSYIEDQNVAN 423
Query: 253 IPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQ 312
PWHG +EW LK+EVNKL+N L ERER+II+LY+G+ K+C TWEDIS++ GLSRERVRQ
Sbjct: 424 DPWHGFEEWYLKEEVNKLLNSNLTERERDIIQLYHGIGKQCHTWEDISRQFGLSRERVRQ 483
Query: 313 VGLVALEKLKHAARKREMEAML 334
VGL+A+EKLKHAAR+++++A+L
Sbjct: 484 VGLIAMEKLKHAARRKKLDALL 505
>B4FP19_MAIZE (tr|B4FP19) RNA polymerase sigma factor 1 isoform 1 OS=Zea mays
GN=ZEAMMB73_912653 PE=2 SV=1
Length = 496
Score = 453 bits (1165), Expect = e-125, Method: Compositional matrix adjust.
Identities = 215/322 (66%), Positives = 268/322 (83%)
Query: 13 ISPELLQNRSKGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQ 72
+SPEL+Q+R++ Y++G VS+ LL+H +VV+LS KIK G+ L +S+LKEKLG EPS Q
Sbjct: 172 VSPELMQSRNRIYLRGTVSKDLLTHKQVVQLSRKIKDGIWLQHQRSKLKEKLGNEPSYKQ 231
Query: 73 IAASLKISRSELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLL 132
+A SL+I ELRA+ E LARE LAMSN RLV+SIAQ+YDN+G E+ DL+QGGLIGLL
Sbjct: 232 LAQSLRIPAPELRARMRESFLAREMLAMSNTRLVISIAQKYDNLGVELPDLIQGGLIGLL 291
Query: 133 RGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRLEER 192
RGIEKFD+S+GF+ISTYVYWWIRQGVSRAL +NSR+ RLPT+LHERL IR AK+ LE++
Sbjct: 292 RGIEKFDASRGFRISTYVYWWIRQGVSRALADNSRSFRLPTYLHERLVAIRGAKYALEDQ 351
Query: 193 GITPTIDRIAKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLEN 252
GI PT++ IA+SLN+S+KKV NATEA+ KV SLD++AFPSLNGLPGDT H YI D + N
Sbjct: 352 GIAPTVENIAESLNISEKKVHNATEAVHKVISLDQQAFPSLNGLPGDTLHSYIEDQNVAN 411
Query: 253 IPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQ 312
PWHG +E LK+EVN LIN TL ERER+IIRLY+G+ K+C TWEDIS++ GLSRERVRQ
Sbjct: 412 DPWHGFEERYLKEEVNSLINSTLNERERDIIRLYHGIGKQCHTWEDISRQFGLSRERVRQ 471
Query: 313 VGLVALEKLKHAARKREMEAML 334
VGLVA+EKLKHAAR+ ++A+L
Sbjct: 472 VGLVAMEKLKHAARREHLDALL 493
>O24348_SORBI (tr|O24348) Plastid RNA polymerase sigma factor OS=Sorghum bicolor
GN=sig1 PE=2 SV=1
Length = 500
Score = 452 bits (1164), Expect = e-125, Method: Compositional matrix adjust.
Identities = 213/322 (66%), Positives = 269/322 (83%)
Query: 13 ISPELLQNRSKGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQ 72
+SPEL+Q+R++ Y++G VS+ LL+H +V++LS KIK G+ L +S+LKEKLG EPS Q
Sbjct: 176 VSPELMQSRNRIYLRGTVSKDLLTHKQVIQLSRKIKDGIWLQHQRSKLKEKLGNEPSYKQ 235
Query: 73 IAASLKISRSELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLL 132
+A SL IS ELRA+ E LARE L MSN+RLV+SIAQ+YDN+G E+ADL+QGGLIGLL
Sbjct: 236 LAQSLHISPPELRARMRESFLAREMLTMSNIRLVISIAQKYDNLGVELADLIQGGLIGLL 295
Query: 133 RGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRLEER 192
RGIEKFD+S+GF+ISTYVYWWIRQGVSRAL +NS+ RLPT+LHERL IR AK+ LE++
Sbjct: 296 RGIEKFDASRGFRISTYVYWWIRQGVSRALADNSKAFRLPTYLHERLIAIRGAKYALEDQ 355
Query: 193 GITPTIDRIAKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLEN 252
GI PT++ IA+SLN+S+KKV NATEA++KV SLD++AFPSLNGLPGDT H YI D + N
Sbjct: 356 GIAPTVENIAESLNISEKKVHNATEAVNKVLSLDQQAFPSLNGLPGDTLHSYIEDQNVAN 415
Query: 253 IPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQ 312
PWHG +E LK+EVN LIN L ERER+IIRLY+G+ K+C TWEDIS++ GLSRERVRQ
Sbjct: 416 DPWHGFEERYLKEEVNNLINSNLNERERDIIRLYHGIGKQCHTWEDISRQFGLSRERVRQ 475
Query: 313 VGLVALEKLKHAARKREMEAML 334
VGLVA+EKLKHAAR++ ++A+L
Sbjct: 476 VGLVAMEKLKHAARRKHLDALL 497
>Q9ZTI3_MAIZE (tr|Q9ZTI3) RNA polymerase sigma factor 1 (Fragment) OS=Zea mays
GN=sig1 PE=2 SV=1
Length = 398
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 215/322 (66%), Positives = 268/322 (83%)
Query: 13 ISPELLQNRSKGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQ 72
+SPEL+Q+R++ Y++G VS+ LL+H +VV+LS KIK G+ L +S+LKEKLG EPS Q
Sbjct: 74 VSPELMQSRNRIYLRGTVSKDLLTHKQVVQLSRKIKDGIWLQHQRSKLKEKLGNEPSYKQ 133
Query: 73 IAASLKISRSELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLL 132
+A SL+I ELRA+ E LARE LAMSN RLV+SIAQ+YDN+G E+ DL+QGGLIGLL
Sbjct: 134 LAQSLRIPAPELRARMRESFLAREMLAMSNTRLVISIAQKYDNLGVELPDLIQGGLIGLL 193
Query: 133 RGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRLEER 192
RGIEKFD+S+GF+ISTYVYWWIRQGVSRAL +NSR+ RLPT+LHERL IR AK+ LE++
Sbjct: 194 RGIEKFDASRGFRISTYVYWWIRQGVSRALADNSRSFRLPTYLHERLVAIRGAKYALEDQ 253
Query: 193 GITPTIDRIAKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLEN 252
GI PT++ IA+SLN+S+KKV NATEA+ KV SLD++AFPSLNGLPGDT H YI D + N
Sbjct: 254 GIAPTVENIAESLNISEKKVHNATEAVHKVISLDQQAFPSLNGLPGDTLHSYIEDQNVAN 313
Query: 253 IPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQ 312
PWHG +E LK+EVN LIN TL ERER+IIRLY+G+ K+C TWEDIS++ GLSRERVRQ
Sbjct: 314 DPWHGFEERYLKEEVNSLINSTLNERERDIIRLYHGIGKQCHTWEDISRQFGLSRERVRQ 373
Query: 313 VGLVALEKLKHAARKREMEAML 334
VGLVA+EKLKHAAR+ ++A+L
Sbjct: 374 VGLVAMEKLKHAARREHLDALL 395
>M1CIG3_SOLTU (tr|M1CIG3) Uncharacterized protein OS=Solanum tuberosum
GN=PGSC0003DMG400026491 PE=4 SV=1
Length = 259
Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust.
Identities = 216/259 (83%), Positives = 234/259 (90%)
Query: 79 ISRSELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKF 138
+ R++L++ IEC+LARERL+MSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKF
Sbjct: 1 MPRTDLQSTLIECSLARERLSMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKF 60
Query: 139 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRLEERGITPTI 198
D SKG+KISTYVYWWIRQGVSR LVENSRTLRLPTHLHERL LIR AK RLEE+GITP++
Sbjct: 61 DPSKGYKISTYVYWWIRQGVSRTLVENSRTLRLPTHLHERLGLIRNAKMRLEEKGITPSV 120
Query: 199 DRIAKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGV 258
+ IA SLNMSQKKVRNATEA SKV+SLDRE FPSLNGLPG T H YIADN LEN PWHGV
Sbjct: 121 NNIAASLNMSQKKVRNATEASSKVYSLDREVFPSLNGLPGATLHSYIADNHLENNPWHGV 180
Query: 259 DEWTLKDEVNKLINVTLVEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVAL 318
D W LKDEVN LI+ +L EREREIIRLYYGLD ECLTWEDISKRIGLSRERVRQVGLVAL
Sbjct: 181 DTWALKDEVNNLISSSLREREREIIRLYYGLDSECLTWEDISKRIGLSRERVRQVGLVAL 240
Query: 319 EKLKHAARKREMEAMLLKH 337
EKLKHAARKR ++AML+K
Sbjct: 241 EKLKHAARKRRLDAMLIKQ 259
>I1I198_BRADI (tr|I1I198) Uncharacterized protein OS=Brachypodium distachyon
GN=BRADI3G16040 PE=4 SV=1
Length = 531
Score = 449 bits (1154), Expect = e-124, Method: Compositional matrix adjust.
Identities = 210/323 (65%), Positives = 275/323 (85%), Gaps = 1/323 (0%)
Query: 13 ISPELL-QNRSKGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDD 71
+SP LL Q+R++ Y++G VS++LL+H +VV+LS+KIK G+ L + +S+LKEKLG EPS
Sbjct: 206 VSPSLLMQSRNRIYLRGSVSKELLTHKQVVQLSKKIKDGIWLQQQRSKLKEKLGNEPSYK 265
Query: 72 QIAASLKISRSELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGL 131
Q+A SL+IS ELR++ + LARE L MSN+RLV+SIAQ+YD +G E+ DL+QGGLIGL
Sbjct: 266 QMAQSLRISTPELRSRMRDSFLAREVLTMSNLRLVISIAQKYDKLGVELPDLIQGGLIGL 325
Query: 132 LRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRLEE 191
LRGIEKFD+S+GF+ISTYVYWWIRQGVSRAL +NS+T RLPT+LHERL IR AK+ LE+
Sbjct: 326 LRGIEKFDASRGFRISTYVYWWIRQGVSRALADNSKTFRLPTYLHERLIAIRGAKYALED 385
Query: 192 RGITPTIDRIAKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLE 251
+GI+PT + IA+SLN+S+KKV NAT+A++KV SLDR+AFPSLNGLPGDT H YI D +
Sbjct: 386 QGISPTTENIAESLNISEKKVHNATDAVNKVLSLDRQAFPSLNGLPGDTLHSYIEDQNVA 445
Query: 252 NIPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDKECLTWEDISKRIGLSRERVR 311
N PWHG ++W LK+EVNKL+N TL ERER+IIRLY+G+ K+C TWEDIS++ GLSRERVR
Sbjct: 446 NDPWHGFEQWYLKEEVNKLLNSTLTERERDIIRLYHGIGKQCHTWEDISRQFGLSRERVR 505
Query: 312 QVGLVALEKLKHAARKREMEAML 334
QVGL+A++KLKHAAR+++++A+L
Sbjct: 506 QVGLIAMQKLKHAARRKKLDALL 528
>Q9ZTI2_MAIZE (tr|Q9ZTI2) RNA polymerase sigma factor 2 (Fragment) OS=Zea mays
GN=sig2 PE=2 SV=1
Length = 349
Score = 446 bits (1147), Expect = e-123, Method: Compositional matrix adjust.
Identities = 213/322 (66%), Positives = 266/322 (82%)
Query: 13 ISPELLQNRSKGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQ 72
ISPEL+Q+R++ Y++G VS+ LL+H +V++LS KIK G+ L +S+LKEKLG EPS Q
Sbjct: 25 ISPELMQSRNRIYLRGTVSKDLLTHKQVIQLSRKIKDGIWLQHQRSKLKEKLGNEPSYKQ 84
Query: 73 IAASLKISRSELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLL 132
+A SL+IS ELRA+ E LARE L MSN+RLV+SIA +YDN+G ++ADL+QGGLIGLL
Sbjct: 85 LAQSLRISAPELRARMRESFLAREMLTMSNIRLVISIAHKYDNLGVDLADLIQGGLIGLL 144
Query: 133 RGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRLEER 192
RGIEKFD+S+GF+ISTYVYWWIRQGVSRAL +NS+T RLPT+LHERL IR AK+ LE++
Sbjct: 145 RGIEKFDASRGFRISTYVYWWIRQGVSRALADNSKTFRLPTYLHERLLAIRGAKYALEDQ 204
Query: 193 GITPTIDRIAKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLEN 252
GI PTI+ IA+SLN+S KKV NATEA+ KV SLD++AFPSLNGLPGDT H YI D + N
Sbjct: 205 GIAPTIENIAESLNISVKKVHNATEAVHKVLSLDQQAFPSLNGLPGDTLHSYIEDQNVAN 264
Query: 253 IPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQ 312
PWHG +E LK+EVN LIN L ERER+IIRLY+G+ K+C TWEDIS++ GLSRERVRQ
Sbjct: 265 DPWHGFEEMYLKEEVNNLINSNLNERERDIIRLYHGIGKQCHTWEDISRQFGLSRERVRQ 324
Query: 313 VGLVALEKLKHAARKREMEAML 334
V LVA+EKLKHAAR++ + A+L
Sbjct: 325 VRLVAMEKLKHAARRKHLNALL 346
>Q9ZP70_WHEAT (tr|Q9ZP70) Chloroplast sigma factor (Fragment) OS=Triticum
aestivum GN=sigA PE=2 SV=1
Length = 461
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 208/322 (64%), Positives = 269/322 (83%)
Query: 13 ISPELLQNRSKGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQ 72
ISPELLQ+R++ Y++G VS++LL+ +VV LS+KIK G+ L + +S+LKEKLG EPS Q
Sbjct: 137 ISPELLQSRNRIYLRGTVSKELLTQKQVVHLSKKIKDGIWLQQQRSKLKEKLGNEPSYKQ 196
Query: 73 IAASLKISRSELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLL 132
+A SL+IS ELR++ E LARE L MSN+RLV+SIAQ+YD +G E++DL+QGGLIGLL
Sbjct: 197 MAQSLRISTPELRSRMRESFLAREVLTMSNIRLVISIAQKYDKLGVELSDLIQGGLIGLL 256
Query: 133 RGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRLEER 192
RGIEKFD+S+GF+ISTYVYWWIRQGVSRAL +NS+T RLPT+LHERL IR AK+ LE++
Sbjct: 257 RGIEKFDASRGFRISTYVYWWIRQGVSRALADNSKTFRLPTYLHERLIAIRGAKYALEDQ 316
Query: 193 GITPTIDRIAKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLEN 252
G++PT IAK LN+S+KKV NATEA++K SLD++AFPSLNGLPGDT H YI D + N
Sbjct: 317 GVSPTTQNIAKLLNISEKKVHNATEAVNKALSLDQQAFPSLNGLPGDTLHSYIEDQNVAN 376
Query: 253 IPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQ 312
PWHG +EW LK+EVNKL+N L ERER+II+LY+G+ K+C TWEDIS++ GLSRERVRQ
Sbjct: 377 DPWHGFEEWYLKEEVNKLLNSNLTERERDIIQLYHGIGKQCHTWEDISRQFGLSRERVRQ 436
Query: 313 VGLVALEKLKHAARKREMEAML 334
VGL+A+EKLK AR+++++A+L
Sbjct: 437 VGLIAMEKLKQRARRKKLDALL 458
>F2DWX1_HORVD (tr|F2DWX1) Predicted protein OS=Hordeum vulgare var. distichum
PE=2 SV=1
Length = 506
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 207/322 (64%), Positives = 267/322 (82%)
Query: 13 ISPELLQNRSKGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQ 72
ISPELLQ+R++ Y++G VS++LL+H +VV LS+KIK G+ L + +S+L E LG EPS Q
Sbjct: 182 ISPELLQSRNRIYLRGTVSKELLTHKQVVHLSKKIKDGIWLQQQRSKLTEILGNEPSYKQ 241
Query: 73 IAASLKISRSELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLL 132
+A SL+IS ELR++ E LARE L MSN+RLV+SIAQ+YD +G E++DL+QGGLIGLL
Sbjct: 242 MAQSLRISTPELRSRMRESFLAREVLTMSNIRLVISIAQKYDKLGVELSDLIQGGLIGLL 301
Query: 133 RGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRLEER 192
RGIEKFD+S+GF+ISTYVYWWIRQGVSRAL +NSRT RLPT++HERL IR AK+ LE++
Sbjct: 302 RGIEKFDASRGFRISTYVYWWIRQGVSRALADNSRTFRLPTYMHERLIAIRAAKYALEDQ 361
Query: 193 GITPTIDRIAKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLEN 252
G++PT IA+ LN+S+KKV NATEA++K SLD++AFPSLNGLPGDT H YI D + N
Sbjct: 362 GVSPTTQNIAELLNISEKKVHNATEAVNKALSLDQQAFPSLNGLPGDTLHSYIEDQNVAN 421
Query: 253 IPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQ 312
PWHG +EW LK+EVN L+ L ERER IIRLY+G+ K+C TWEDIS++ GLSRERVRQ
Sbjct: 422 DPWHGFEEWYLKEEVNNLLISNLTERERHIIRLYHGIGKQCHTWEDISRQFGLSRERVRQ 481
Query: 313 VGLVALEKLKHAARKREMEAML 334
VGL+A+EKLKHAAR+++++A+L
Sbjct: 482 VGLIAMEKLKHAARRKKLDALL 503
>F2DCW4_HORVD (tr|F2DCW4) Predicted protein OS=Hordeum vulgare var. distichum
PE=2 SV=1
Length = 506
Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust.
Identities = 206/322 (63%), Positives = 267/322 (82%)
Query: 13 ISPELLQNRSKGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQ 72
ISPELLQ+R++ Y++G VS++LL+H +VV LS+KIK G+ L + +S+L E LG EPS Q
Sbjct: 182 ISPELLQSRNRIYLRGTVSKELLTHKQVVHLSKKIKDGIWLQQQRSKLTEILGNEPSYKQ 241
Query: 73 IAASLKISRSELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLL 132
+A SL+IS ELR++ E LARE L MSN+RLV+SIAQ+YD +G E++DL+QGGLIGLL
Sbjct: 242 MAQSLRISTPELRSRMRESFLAREVLTMSNIRLVISIAQKYDKLGVELSDLIQGGLIGLL 301
Query: 133 RGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRLEER 192
RGIEKFD+S+GF+ISTYVYWWIRQGVSRAL +NS+T RLPT++HERL IR AK+ LE++
Sbjct: 302 RGIEKFDASRGFRISTYVYWWIRQGVSRALADNSKTFRLPTYMHERLIAIRAAKYALEDQ 361
Query: 193 GITPTIDRIAKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLEN 252
G++PT IA+ LN+S+KKV NATEA++K SLD++AFPSLNGLPGDT H YI D + N
Sbjct: 362 GVSPTTQNIAELLNISEKKVHNATEAVNKALSLDQQAFPSLNGLPGDTLHSYIEDQNVAN 421
Query: 253 IPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQ 312
PWHG +EW LK+EVN L+ L ERER IIRLY+G+ K+C TWEDIS++ GLSRERVRQ
Sbjct: 422 DPWHGFEEWYLKEEVNNLLISNLTERERHIIRLYHGIGKQCHTWEDISRQFGLSRERVRQ 481
Query: 313 VGLVALEKLKHAARKREMEAML 334
VGL+A+EKLKHAAR+++++A+L
Sbjct: 482 VGLIAMEKLKHAARRKKLDALL 503
>M8CE31_AEGTA (tr|M8CE31) RNA polymerase sigma factor rpoD OS=Aegilops tauschii
GN=F775_32229 PE=4 SV=1
Length = 388
Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust.
Identities = 187/276 (67%), Positives = 234/276 (84%)
Query: 59 RLKEKLGCEPSDDQIAASLKISRSELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGA 118
RLKEKLG EPS Q+A SL+IS ELR++ E LARE L MSN+RLV+SIAQ+YD +G
Sbjct: 110 RLKEKLGNEPSYKQMAQSLRISTPELRSRMRESFLAREVLTMSNIRLVISIAQKYDKLGV 169
Query: 119 EMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHER 178
E++DL+QGGLIGLLRGIEKFD+S+GF+ISTYVYWWIRQGVSRAL +NS+T RLPT+LHER
Sbjct: 170 ELSDLIQGGLIGLLRGIEKFDASRGFRISTYVYWWIRQGVSRALADNSKTFRLPTYLHER 229
Query: 179 LSLIRTAKFRLEERGITPTIDRIAKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPG 238
L IR AK+ LE++G++PT IAK LN+S+KKV NATEA++K SLD++AFPSLNGLPG
Sbjct: 230 LIAIRGAKYALEDQGVSPTTQNIAKLLNISEKKVHNATEAVNKALSLDQQAFPSLNGLPG 289
Query: 239 DTHHCYIADNRLENIPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDKECLTWED 298
DT H YI D + N PWHG +EW LK+EVNKL+N L ERER+II+LY+G+ K+C TWED
Sbjct: 290 DTLHSYIEDQNVANDPWHGFEEWYLKEEVNKLLNSNLTERERDIIQLYHGIGKQCHTWED 349
Query: 299 ISKRIGLSRERVRQVGLVALEKLKHAARKREMEAML 334
IS++ GLSRERVRQVGL+A+EKLKHAAR+++++A+L
Sbjct: 350 ISRQFGLSRERVRQVGLIAMEKLKHAARRKKLDALL 385
>R0IAB6_9BRAS (tr|R0IAB6) Uncharacterized protein OS=Capsella rubella
GN=CARUB_v10020145mg PE=4 SV=1
Length = 464
Score = 349 bits (896), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 173/219 (78%), Positives = 198/219 (90%), Gaps = 2/219 (0%)
Query: 8 QMRSLISPELLQ-NRSKG-YVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLG 65
Q+RS++S EL Q NR +G YVKGV+SE +LSH EVV+LS+KIK GL LD+HKSRLK++LG
Sbjct: 191 QVRSVMSSELFQHNRVRGGYVKGVISEDVLSHTEVVRLSKKIKSGLRLDDHKSRLKDRLG 250
Query: 66 CEPSDDQIAASLKISRSELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQ 125
CEPSD+Q+A SLKISR+EL+A +EC LARE+LAMSNVRLVMSIAQRYDN+GAEM+DLVQ
Sbjct: 251 CEPSDEQLAISLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQ 310
Query: 126 GGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTA 185
GGLIGLLRGIEKFDSSKGF+ISTYVYWWIRQGVSRALV+NSRTLRLPTHLHERL LIR A
Sbjct: 311 GGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNA 370
Query: 186 KFRLEERGITPTIDRIAKSLNMSQKKVRNATEAISKVFS 224
K RL+E+GITP+IDRIA+SLNMSQKKVRNATE FS
Sbjct: 371 KLRLQEKGITPSIDRIAESLNMSQKKVRNATEVKKSNFS 409
>Q93V67_9BRYO (tr|Q93V67) PpSIG1 OS=Physcomitrella patens GN=Sig1 PE=2 SV=1
Length = 677
Score = 260 bits (665), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 133/314 (42%), Positives = 212/314 (67%), Gaps = 4/314 (1%)
Query: 25 YVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRSEL 84
Y++ + LL+ E V LS+K+++GL+L E + +L +LG PS+++ A + +S +L
Sbjct: 360 YLREITKINLLTKQEEVFLSKKLRIGLNLLEERKKLAAELGYVPSNEEWAPHMNLSVGDL 419
Query: 85 RAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGF 144
K E AR+++ M+N+RLV+S+A++Y + G EMADL+Q G IGLLRG+EKFD ++G+
Sbjct: 420 VRKLGEAEWARDKMVMANLRLVVSVAKQYHSFGLEMADLIQEGSIGLLRGVEKFDHTRGY 479
Query: 145 KISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRLEERGITPTIDRIAKS 204
K+STYV+WWIRQGV+RA+ ++SRT+RLP H+H+ L IR AK L G T ++ I+++
Sbjct: 480 KLSTYVHWWIRQGVTRAIADHSRTVRLPVHVHDTLGRIRKAKSTLLSEGCTASVQEISEA 539
Query: 205 LNMSQKKVRNATEAISKVFSLDRE-AFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTL 263
N++ K++N + K+ SLD+E +L G+T H +AD +EN PW V+ +
Sbjct: 540 TNLTGTKIKNTLQVTKKLVSLDKEIGRNTLQSGDGETLHSLVADRDIENQPWTIVERMLM 599
Query: 264 KDEVNKLINVTLVEREREIIRLYYGLDKE---CLTWEDISKRIGLSRERVRQVGLVALEK 320
KD+V+KL+ L RER+I+RL+YG+ +E ++ E IS R G+SRERVRQ+ A+ K
Sbjct: 600 KDDVDKLLTSQLGPRERDIVRLHYGVGREDGSVMSLESISYRYGVSRERVRQLETAAMRK 659
Query: 321 LKHAARKREMEAML 334
L+ +R++ ++ L
Sbjct: 660 LQIKSREQGLDRYL 673
>E1C9S7_PHYPA (tr|E1C9S7) Plastid sigma factor SIG1 OS=Physcomitrella patens
subsp. patens GN=PpSig1 PE=4 SV=1
Length = 677
Score = 260 bits (665), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 133/314 (42%), Positives = 212/314 (67%), Gaps = 4/314 (1%)
Query: 25 YVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRSEL 84
Y++ + LL+ E V LS+K+++GL+L E + +L +LG PS+++ A + +S +L
Sbjct: 360 YLREITKINLLTKQEEVFLSKKLRIGLNLLEERKKLAAELGYVPSNEEWAPHMNLSVGDL 419
Query: 85 RAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGF 144
K E AR+++ M+N+RLV+S+A++Y + G EMADL+Q G IGLLRG+EKFD ++G+
Sbjct: 420 VRKLGEAEWARDKMVMANLRLVVSVAKQYHSFGLEMADLIQEGSIGLLRGVEKFDHTRGY 479
Query: 145 KISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRLEERGITPTIDRIAKS 204
K+STYV+WWIRQGV+RA+ ++SRT+RLP H+H+ L IR AK L G T ++ I+++
Sbjct: 480 KLSTYVHWWIRQGVTRAIADHSRTVRLPVHVHDTLGRIRKAKSTLLSEGCTASVQEISEA 539
Query: 205 LNMSQKKVRNATEAISKVFSLDRE-AFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTL 263
N++ K++N + K+ SLD+E +L G+T H +AD +EN PW V+ +
Sbjct: 540 TNLTGTKIKNTLQVTKKLVSLDKEIGRNTLQSGDGETLHSLVADRDIENQPWTIVERMLM 599
Query: 264 KDEVNKLINVTLVEREREIIRLYYGLDKE---CLTWEDISKRIGLSRERVRQVGLVALEK 320
KD+V+KL+ L RER+I+RL+YG+ +E ++ E IS R G+SRERVRQ+ A+ K
Sbjct: 600 KDDVDKLLTSQLGPRERDIVRLHYGVGREDGSVMSLESISYRYGVSRERVRQLETAAMRK 659
Query: 321 LKHAARKREMEAML 334
L+ +R++ ++ L
Sbjct: 660 LQIKSREQGLDRYL 673
>M1CIG6_SOLTU (tr|M1CIG6) Uncharacterized protein OS=Solanum tuberosum
GN=PGSC0003DMG400026491 PE=4 SV=1
Length = 151
Score = 257 bits (657), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 123/151 (81%), Positives = 133/151 (88%)
Query: 187 FRLEERGITPTIDRIAKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIA 246
RLEE+GITP+++ IA SLNMSQKKVRNATEA SKV+SLDRE FPSLNGLPG T H YIA
Sbjct: 1 MRLEEKGITPSVNNIAASLNMSQKKVRNATEASSKVYSLDREVFPSLNGLPGATLHSYIA 60
Query: 247 DNRLENIPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDKECLTWEDISKRIGLS 306
DN LEN PWHGVD W LKDEVN LI+ +L EREREIIRLYYGLD ECLTWEDISKRIGLS
Sbjct: 61 DNHLENNPWHGVDTWALKDEVNNLISSSLREREREIIRLYYGLDSECLTWEDISKRIGLS 120
Query: 307 RERVRQVGLVALEKLKHAARKREMEAMLLKH 337
RERVRQVGLVALEKLKHAARKR ++AML+K
Sbjct: 121 RERVRQVGLVALEKLKHAARKRRLDAMLIKQ 151
>K0ITD8_MARPO (tr|K0ITD8) Plastid RNA polymerase sigma factor 1 OS=Marchantia
polymorpha GN=Mpsig1 PE=2 SV=1
Length = 574
Score = 245 bits (626), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 128/313 (40%), Positives = 203/313 (64%), Gaps = 5/313 (1%)
Query: 15 PELLQNRSKGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIA 74
PE +Q+ Y++ + L+ E + LS+KI+ G L E + + + LG + DQ A
Sbjct: 248 PEGVQDYLSTYLRDITKIDRLTAEEEIMLSKKIRTGYILKEERKKFERALGHPITKDQWA 307
Query: 75 ASLKISRSELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRG 134
+ ++ +L A+ E LAR+R+ M+N+RLV+S+ ++Y+ G E+ DL+Q G IGLL+G
Sbjct: 308 GHMHMAVGDLDAQLHEAELARDRMVMANLRLVVSVVKQYNCEGLEVPDLIQEGSIGLLKG 367
Query: 135 IEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRLEERGI 194
+EKFD ++G+K+STYV+WWIRQGV+RA+ ++SRT+RLP H+H+ L IR + R+ + G
Sbjct: 368 VEKFDHTRGYKLSTYVHWWIRQGVTRAIADHSRTVRLPVHVHDTLGRIRRTRARMLQDGA 427
Query: 195 TPTIDRIAKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTH--HCYIADNRLEN 252
T+ ++K+LN+S +V+NA + K+ SLD + + L GDT H +AD EN
Sbjct: 428 PATVQTLSKALNLSDNQVKNALKVPKKLKSLDMQVGHQKSVLTGDTETFHSLVADQDSEN 487
Query: 253 IPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDK---ECLTWEDISKRIGLSRER 309
PW V++ +K++V+K++N L REREII+++YG+D ++ E IS R G+SRER
Sbjct: 488 HPWAVVEKAHMKEDVDKMLNTQLGSREREIIKMHYGVDSVDGYPMSLESISHRYGVSRER 547
Query: 310 VRQVGLVALEKLK 322
VRQ+ A KL+
Sbjct: 548 VRQLERAAKRKLQ 560
>A5GQ42_SYNR3 (tr|A5GQ42) RNA polymerase sigma factor OS=Synechococcus sp.
(strain RCC307) GN=rpoD PE=3 SV=1
Length = 324
Score = 187 bits (474), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 111/327 (33%), Positives = 192/327 (58%), Gaps = 16/327 (4%)
Query: 3 ACDAMQMRSLISPELLQNRSKGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKE 62
A A+ R + +L+++ Y++ + LLSH + + L +++ + L+E ++ K
Sbjct: 2 ATTAVDQRPPVDGDLVRS----YLRDIGRVPLLSHEQEITLGRQVQELVRLEEAEAEFKM 57
Query: 63 KLGCEPSDDQIAASLKISRSELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMAD 122
+ G EPS +++A+S IS + LR + I A+ER+ +N+RLV+S+A++Y E+ D
Sbjct: 58 RQGHEPSREELASSFGISPAVLRRRLINGRRAKERMVAANLRLVVSVAKKYTKRNMELLD 117
Query: 123 LVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLI 182
L+Q G IGL+RG+EKFD ++G+K STY YWWIRQG++RA+ E SRT+RLP H+ E L+ +
Sbjct: 118 LIQEGTIGLVRGVEKFDPTRGYKFSTYAYWWIRQGITRAIAEKSRTIRLPIHITETLNKL 177
Query: 183 RTAKFRL-EERGITPTIDRIAKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTH 241
+ + L +E G TPT+ +A+ L + + +V++ + SL+ + G DT
Sbjct: 178 KKGQRELSQELGRTPTVGELAEFLELPEPEVKDLLSRARQPVSLEMKV-----GDSDDTE 232
Query: 242 HCYIADNRLENIPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLD-KECLTWEDIS 300
C + N +P VD LK ++ L+ L + ++++ YG+D +E ++ I
Sbjct: 233 LCELLQND-APMPHELVDGDCLKGDMRSLLE-QLPPLQGRVLKMRYGIDVEEPMSLTGIG 290
Query: 301 KRIGLSRERVRQV---GLVALEKLKHA 324
+ +G+SR+RVR + GL L +L A
Sbjct: 291 RELGMSRDRVRNLERDGLAGLRRLSEA 317
>F2HHX7_9CRYP (tr|F2HHX7) RNA-polymerase sigma factor OS=Cryptomonas paramecium
GN=rpoD PE=4 SV=1
Length = 414
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 120/306 (39%), Positives = 185/306 (60%), Gaps = 11/306 (3%)
Query: 25 YVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRSEL 84
Y++ + +LL E ++L+ +I L + K LKEKLG EP+ + +A+ KIS +
Sbjct: 89 YLQLIGKVKLLKPEEEIQLAREISQLLQWEHIKVFLKEKLGREPTALEWSAACKISDVQ- 147
Query: 85 RAKTI--ECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSK 142
+ KT+ A+ER+ +N+RLV+SIA+RY N G + DLVQ G +GL+R EKFDS K
Sbjct: 148 KFKTVLYNSRKAKERMIAANLRLVVSIAKRYSNRGMSLQDLVQEGSLGLIRATEKFDSEK 207
Query: 143 GFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLI-RTAKFRLEERGITPTIDRI 201
GFK STY WWI+Q VSRA+ ++SRT+RLP HL++ LS I +T + E G +PT + I
Sbjct: 208 GFKFSTYATWWIKQSVSRAIADHSRTIRLPVHLYDTLSAIKKTTRILTIELGRSPTEEEI 267
Query: 202 AKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEW 261
A ++++ K+R+ ++ SL++ P N GDT + P V++
Sbjct: 268 ACKMDVTVDKLRSVLQSAQPTLSLEK---PIKND--GDTAQLSDFIEADQESPDEHVEKS 322
Query: 262 TLKDEVNKLINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEK 320
L+D++ +IN +L RER++IR+ YGLD + T E+I + ++RERVRQ+ A+ K
Sbjct: 323 MLRDDLRDVIN-SLSLRERDVIRMRYGLDDGKIRTLEEIGQIFSVTRERVRQIEAKAIRK 381
Query: 321 LKHAAR 326
L+ R
Sbjct: 382 LRQPYR 387
>Q98RZ3_GUITH (tr|Q98RZ3) RNA-polymerase sigma factor OS=Guillardia theta GN=rpoD
PE=4 SV=1
Length = 460
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 114/307 (37%), Positives = 183/307 (59%), Gaps = 13/307 (4%)
Query: 25 YVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISR-SE 83
Y++ + +LL E ++L+ +I L + K L++KL EP++ + A+ K+S +
Sbjct: 118 YLQLIGRVRLLRPDEEIQLAREISQLLHWEHVKISLRDKLRREPTNSEWTAACKVSDVRK 177
Query: 84 LRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKG 143
R+ A+ER+ +N+RLV+SIA+RY N G + DL+Q G +GL+R EKFDS KG
Sbjct: 178 FRSILHNARRAKERMVAANLRLVVSIAKRYVNRGMSLQDLIQEGSLGLIRAAEKFDSEKG 237
Query: 144 FKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRLE-ERGITPTIDRIA 202
FK STY WW++Q V+RA+ ++SRT+RLP HL++ +S IR L E G +PT + IA
Sbjct: 238 FKFSTYATWWVKQAVTRAIADHSRTIRLPVHLYDTISAIRKTTRNLNIEIGRSPTEEEIA 297
Query: 203 KSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIAD--NRLENIPWHGVDE 260
K ++MS +K+RN ++ SL+R L D ++D + P V++
Sbjct: 298 KRMDMSVEKLRNVLQSAQPTLSLER-------PLKNDDDTSQLSDFIEADQESPEEHVEK 350
Query: 261 WTLKDEVNKLINVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALE 319
L+D++ +IN +L RER+++R+ YGLD + T E+I + ++RERVRQ+ A+
Sbjct: 351 SMLRDDLENVIN-SLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKAIR 409
Query: 320 KLKHAAR 326
KL+ R
Sbjct: 410 KLRQPYR 416
>A9BK56_HEMAN (tr|A9BK56) RpoD OS=Hemiselmis andersenii GN=HAN_1g44 PE=4 SV=1
Length = 485
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 114/305 (37%), Positives = 181/305 (59%), Gaps = 9/305 (2%)
Query: 25 YVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISR-SE 83
Y++ + +LL E ++L+ +I L + K L+EKL EP+ + A+ K+S +
Sbjct: 135 YLQLIGRVRLLRPEEEIQLAREISQLLHWEHVKISLREKLQREPTSSEWTAACKVSDVKK 194
Query: 84 LRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKG 143
RA A+ER+ +N+RLV+SIA+RY N G + DL+Q G +GL+R EKFDS KG
Sbjct: 195 FRAILHNARRAKERMVAANLRLVVSIAKRYVNRGMSLQDLIQEGSLGLIRAAEKFDSEKG 254
Query: 144 FKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRLE-ERGITPTIDRIA 202
FK STY WW++Q V+RA+ ++SRT+RLP HL++ +S IR L E G +PT + IA
Sbjct: 255 FKFSTYATWWVKQAVTRAIADHSRTIRLPVHLYDTISAIRKTTRTLNIEIGRSPTEEEIA 314
Query: 203 KSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWT 262
+ ++MS +K+R+ ++ SL+R P N +I + + P V++
Sbjct: 315 EKMDMSVEKLRSVLQSAQPTLSLER---PLKNDDDASQLSDFIEAD--QESPEEHVEKSM 369
Query: 263 LKDEVNKLINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 321
L+D++ +IN +L RER+++R+ YGLD T E+I + ++RERVRQ+ A+ KL
Sbjct: 370 LRDDLENVIN-SLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKAIRKL 428
Query: 322 KHAAR 326
+ R
Sbjct: 429 RQPYR 433
>J7G2H9_9CRYP (tr|J7G2H9) RNA-polymerase sigma factor OS=Chroomonas
mesostigmatica CCMP1168 GN=rpoD PE=4 SV=1
Length = 485
Score = 184 bits (466), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 114/305 (37%), Positives = 182/305 (59%), Gaps = 9/305 (2%)
Query: 25 YVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISR-SE 83
Y++ + +LL E ++L+ +I L + K L+EKL EP+ + A+ K+S +
Sbjct: 138 YLQLIGRVRLLRPEEEIQLAREISQLLHWEHVKISLREKLQREPTSSEWTAACKVSDVKK 197
Query: 84 LRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKG 143
RA A+ER+ +N+RLV+SIA+RY N G + DL+Q G +GL+R EKFDS KG
Sbjct: 198 FRAILHNARRAKERMVAANLRLVVSIAKRYVNRGMSLQDLIQEGSLGLIRAAEKFDSEKG 257
Query: 144 FKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRLE-ERGITPTIDRIA 202
FK STY WW++Q V+RA+ ++SRT+RLP HL++ +S IR L E G +PT + IA
Sbjct: 258 FKFSTYATWWVKQAVTRAIADHSRTIRLPVHLYDTISAIRKTTRTLNIEIGRSPTEEEIA 317
Query: 203 KSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWT 262
+ ++MS +K+R+ ++ SL+R P N +I + + P V++
Sbjct: 318 EKMDMSVEKLRSVLQSAQPTLSLER---PLKNDDDASQLSDFIEAD--QESPEEHVEKSM 372
Query: 263 LKDEVNKLINVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKL 321
L+D++ +IN +L RER+++R+ YGLD + T E+I + ++RERVRQ+ A+ KL
Sbjct: 373 LRDDLENVIN-SLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKAIRKL 431
Query: 322 KHAAR 326
+ R
Sbjct: 432 RQPYR 436
>Q7NEW6_GLOVI (tr|Q7NEW6) RNA polymerase sigma factor OS=Gloeobacter violaceus
(strain PCC 7421) GN=gll3762 PE=3 SV=1
Length = 362
Score = 184 bits (466), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 111/305 (36%), Positives = 180/305 (59%), Gaps = 9/305 (2%)
Query: 25 YVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRSEL 84
Y++ + LL E V+L+++++ + L K L+ LG E SD+Q A + K+ EL
Sbjct: 54 YLQEIGRVPLLGRDEEVELAQQVQKLMKLTALKESLQTSLGSEYSDEQWAEAAKVGLFEL 113
Query: 85 RAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGF 144
+ + + + A++++ +N+RLV+S+A++Y N G E+ DLVQ G +GL R +EKFD +KG+
Sbjct: 114 KRQVLAGSRAKKKMIEANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGY 173
Query: 145 KISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRLEER-GITPTIDRIAK 203
+ STY YWWIRQG++RA+ SRT+RLP H+ E+L+ I+ + +L + G TPTI IA+
Sbjct: 174 RFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNRIKKTQRKLSQNLGRTPTISEIAE 233
Query: 204 SLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTL 263
L M VR + + SL+ G DT + + + V E +L
Sbjct: 234 ELEMEPAHVRELMSRVPRSVSLETRV-----GKDKDTELGELLEAEEVSPEESAVQE-SL 287
Query: 264 KDEVNKLINVTLVEREREIIRLYYG-LDKECLTWEDISKRIGLSRERVRQVGLVALEKLK 322
+ +V +L++ L RER++I + YG LD + +I + + LSRERVRQ+ AL+KL+
Sbjct: 288 RRDVKELLD-DLTLRERDVITMRYGLLDGRTYSLSEIGRALDLSRERVRQIESKALQKLR 346
Query: 323 HAARK 327
R+
Sbjct: 347 QPRRR 351
>K9YFR5_HALP7 (tr|K9YFR5) RNA polymerase sigma factor OS=Halothece sp. (strain
PCC 7418) GN=PCC7418_3695 PE=3 SV=1
Length = 394
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 111/305 (36%), Positives = 180/305 (59%), Gaps = 11/305 (3%)
Query: 25 YVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRSEL 84
Y++ + +LL E ++L+ KI L L+ ++ L+ +GCEP+D++ A + + +
Sbjct: 88 YLQEIGRIRLLRADEEIELARKIADLLELERKRTELEATIGCEPTDEEWAEEVDMPLQKF 147
Query: 85 RAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGF 144
R + + A+E++ SN+RLV+SIA++Y N G DL+Q G +GL+R EKFD KG+
Sbjct: 148 RRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGY 207
Query: 145 KISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLI-RTAKFRLEERGITPTIDRIAK 203
K STY WWIRQ ++RA+ + SRT+RLP HL+E +S I +T K +E G PT + IA+
Sbjct: 208 KFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQELGRKPTEEEIAE 267
Query: 204 SLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYI-ADNRLENIPWHGVDEWT 262
+ M+ +K+R ++ SL+ + GD +I AD P V +
Sbjct: 268 RMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD----FIEADG---ETPEDEVSKSL 320
Query: 263 LKDEVNKLINVTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKL 321
L++++ +++ TL RER+++RL YGL D T E+I + ++RER+RQ+ AL KL
Sbjct: 321 LREDLEDVLD-TLSPRERDVLRLRYGLEDGRMKTLEEIGQIFNVTRERIRQIEAKALRKL 379
Query: 322 KHAAR 326
+H R
Sbjct: 380 RHPNR 384
>Q8S9D0_GUITH (tr|Q8S9D0) RNA polymerase sigma factor OS=Guillardia theta GN=sigA
PE=2 SV=1
Length = 490
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 115/306 (37%), Positives = 183/306 (59%), Gaps = 11/306 (3%)
Query: 25 YVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISR-SE 83
Y++ + +LL E ++L+ +I L + K L+EKL EP+ + A+ K+S +
Sbjct: 135 YLQLIGRVRLLRPEEEIQLAREISQLLHWEHVKISLREKLQREPTSSEWTAACKVSDVKK 194
Query: 84 LRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKG 143
R+ A+ER+ +N+RLV+SIA+RY N G + DL+Q G +GL+R EKFDS KG
Sbjct: 195 FRSILHNARRAKERMVAANLRLVVSIAKRYVNRGMSLQDLIQEGSLGLIRAAEKFDSEKG 254
Query: 144 FKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRLE-ERGITPTIDRIA 202
FK STY WW++Q V+RA+ ++SRT+RLP HL++ +S IR L E G +PT + IA
Sbjct: 255 FKFSTYATWWVKQAVTRAIADHSRTIRLPVHLYDTISAIRKTTRTLNIEIGRSPTEEEIA 314
Query: 203 KSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYI-ADNRLENIPWHGVDEW 261
+ ++MS +K+R+ ++ SL+R P N +I AD + P V++
Sbjct: 315 EKMDMSVEKLRSVLQSAQPTLSLER---PLKNDDDASQLSDFIEAD---QESPEEHVEKS 368
Query: 262 TLKDEVNKLINVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEK 320
L+D++ +IN +L RER+++R+ YGLD + T E+I + ++RERVRQ+ A+ K
Sbjct: 369 MLRDDLENVIN-SLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKAIRK 427
Query: 321 LKHAAR 326
L+ R
Sbjct: 428 LRQPYR 433
>I4I200_MICAE (tr|I4I200) RNA polymerase sigma factor rpoD3 OS=Microcystis
aeruginosa PCC 9808 GN=rpoD PE=4 SV=1
Length = 318
Score = 181 bits (458), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 111/314 (35%), Positives = 190/314 (60%), Gaps = 18/314 (5%)
Query: 23 KGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRS 82
+ Y++ + LLSH E + +++++ + L++ K L+ KLG +PSD Q + + +IS
Sbjct: 12 RAYLREIGRVPLLSHEEEILYAKQVQRLIFLEKIKESLRAKLGSDPSDRQWSEAAEISEE 71
Query: 83 ELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSK 142
+LR + A+ ++ +N+RLV+S+A++Y ++ DL+Q G IG+ RG+EKFD +K
Sbjct: 72 QLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTK 131
Query: 143 GFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRL-EERGITPTIDRI 201
G++ STY YWWIRQ ++RA+ E SRT+RLP H+ E+L+ I+ A+ +L +++G TI +
Sbjct: 132 GYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQDKGRAATIAEL 191
Query: 202 AKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEW 261
A+ L+++ K+VR+ E + SLD + GD + + L P +++
Sbjct: 192 AEELDLTPKQVRDYLERSRQPLSLDLKV--------GDNQDTELGE--LLEDPGLSPEDY 241
Query: 262 T----LKDEVNKLINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLV 316
T L+ ++ KL+ L +++E+I L +GLD + LT I R+ +SRERVRQ+
Sbjct: 242 TAYSSLQVDLEKLM-ADLTPQQKEVICLRFGLDNGQPLTLAKIGVRLNISRERVRQIERE 300
Query: 317 ALEKL-KHAARKRE 329
A+ KL K A+ RE
Sbjct: 301 AIAKLRKRKAKIRE 314
>K0ISZ8_MARPO (tr|K0ISZ8) Plastid RNA polymerase sigma factor 2 OS=Marchantia
polymorpha GN=Mpsig2 PE=2 SV=1
Length = 615
Score = 180 bits (457), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 108/310 (34%), Positives = 187/310 (60%), Gaps = 8/310 (2%)
Query: 19 QNRSKGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLK 78
Q+ + Y++ + +LL+ +E ++L+E I+ L ++ K+ L+E++G EP+ + A ++
Sbjct: 302 QDPVRAYLRDIGKTKLLTSSEEIELAEGIQDLLRVESVKNDLREQMGREPTLMEWAKAVG 361
Query: 79 ISRSELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKF 138
R L ++ ++R+ SN+RLV+SIA+RY G + DL+Q G +GL+RG EKF
Sbjct: 362 TERHSLESRIKSGQACKDRMVNSNLRLVVSIAKRYQGRGMTIQDLIQEGSMGLIRGAEKF 421
Query: 139 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRL-EERGITPT 197
D ++GFK STY +WWIRQ ++RA+ + SRT+RLP H++E LS I AK L E G P
Sbjct: 422 DHTRGFKFSTYAHWWIRQAITRAIADQSRTIRLPVHVYELLSRITKAKSMLAAEHGRAPR 481
Query: 198 IDRIAKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHG 257
+ +A+ + +S +K++ ++ S++ FP G DT + ++ + P
Sbjct: 482 DEEVAELVGLSIEKLKMVIKSARSPKSME---FPV--GKNNDTTLGEVIPDKDIDSPEEA 536
Query: 258 VDEWTLKDEVNKLINVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLV 316
+ + LK +++ +++ TL RER+++RL YGLD + T E+I ++RER+RQ+
Sbjct: 537 ISKRLLKQDLDVVLH-TLSPRERDVLRLRYGLDDGRMRTLEEIGNVFKVTRERIRQIEAK 595
Query: 317 ALEKLKHAAR 326
AL KL+ +R
Sbjct: 596 ALRKLRQPSR 605
>B8HU39_CYAP4 (tr|B8HU39) RNA polymerase sigma factor OS=Cyanothece sp. (strain
PCC 7425 / ATCC 29141) GN=Cyan7425_0568 PE=3 SV=1
Length = 372
Score = 180 bits (457), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 106/304 (34%), Positives = 179/304 (58%), Gaps = 7/304 (2%)
Query: 24 GYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRSE 83
++K + LL +E ++L+ ++K + L E K +L +LG + ++AA++ ++ +
Sbjct: 64 AFLKDMARYPLLQPSEEIELARRVKYLVELSELKDQLGRQLGRSATLPEVAAAMNLTEQQ 123
Query: 84 LRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKG 143
L+ + +A+ ++ SN+RLV+SIA+RY N G DLVQ G +GL R EKFD KG
Sbjct: 124 LQIRIYRGQVAKSKMIRSNLRLVVSIAKRYLNRGVPFLDLVQEGALGLNRATEKFDPEKG 183
Query: 144 FKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRL-EERGITPTIDRIA 202
FK STY YWWIRQG++RA+ +SRT+RLP H+ E+L+ ++ + L +E PT +A
Sbjct: 184 FKFSTYAYWWIRQGITRAIANDSRTIRLPIHIVEKLNKLKKLQRHLKKELQRNPTEQELA 243
Query: 203 KSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWT 262
+L ++ ++++ A + SL+R G DT + + P + E
Sbjct: 244 DALEITLEQLQMLQRARQQALSLNRRV-----GREEDTELLDLLEADSTQSPEKQMGEVM 298
Query: 263 LKDEVNKLINVTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKL 321
++ E+++L+++ L ++ER++I L YGL E T E++S LSRERVRQ+ A+ KL
Sbjct: 299 MRQEISQLLDLVLTKQERDVIILRYGLVSGEPNTLEEVSGLFNLSRERVRQIQNKAIGKL 358
Query: 322 KHAA 325
+ +A
Sbjct: 359 RRSA 362
>E0UIU1_CYAP2 (tr|E0UIU1) RNA polymerase, sigma 70 subunit, RpoD subfamily
OS=Cyanothece sp. (strain PCC 7822) GN=Cyan7822_1402
PE=4 SV=1
Length = 318
Score = 180 bits (456), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 108/305 (35%), Positives = 181/305 (59%), Gaps = 15/305 (4%)
Query: 23 KGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRS 82
+ Y++ + LL+H E + L+++++ ++L E K L + L EP + + A + KIS
Sbjct: 12 RAYLREIGRVPLLTHEEEIVLAKRVQRSMALQEIKDTLTKNLSREPLEHEWAEAAKISEE 71
Query: 83 ELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSK 142
ELR A+E++ +N+RLV+S+A++Y ++ DL+Q G IG+ RG+EKFD +K
Sbjct: 72 ELRRTMAAGKAAKEKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTK 131
Query: 143 GFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRL-EERGITPTIDRI 201
G++ STY YWWIRQ ++RA+ E SRT+RLP H+ E+L+ I+ A+ +L +++G TI +
Sbjct: 132 GYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQKQGRAATISEL 191
Query: 202 AKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENI---PWHGV 258
A+ L ++ ++VR E + SLD GD + + LE+ P
Sbjct: 192 AQELELTPRQVREYLERARQPLSLDLRV--------GDNQDTELGE-LLEDTGTSPEDYA 242
Query: 259 DEWTLKDEVNKLINVTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVA 317
+L+ ++ KL++ L ++RE++ L +GL D + LT I R+ +SRERVRQ+ A
Sbjct: 243 THSSLQLDLEKLMS-DLTPQQREVLALRFGLVDGQPLTLAKIGVRLNISRERVRQIEREA 301
Query: 318 LEKLK 322
L KL+
Sbjct: 302 LSKLR 306
>L8NM63_MICAE (tr|L8NM63) RNA polymerase sigma factor rpoD2 OS=Microcystis
aeruginosa DIANCHI905 GN=rpoD2 PE=4 SV=1
Length = 318
Score = 179 bits (455), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 111/313 (35%), Positives = 189/313 (60%), Gaps = 16/313 (5%)
Query: 23 KGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRS 82
+ Y++ + LLSH E + +++++ + L++ K L+ KLG +PSD Q + + +IS
Sbjct: 12 RAYLREIGRVPLLSHEEEILYAKQVQRLIFLEKIKESLRAKLGSDPSDRQWSEAAEISEE 71
Query: 83 ELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSK 142
+LR + A+ ++ +N+RLV+S+A++Y ++ DL+Q G IG+ RG+EKFD +K
Sbjct: 72 QLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTK 131
Query: 143 GFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRL-EERGITPTIDRI 201
G++ STY YWWIRQ ++RA+ E SRT+RLP H+ E+L+ I+ A+ +L +++G TI +
Sbjct: 132 GYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQDKGRAATIAEL 191
Query: 202 AKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENI---PWHGV 258
A+ L+++ K+VR+ E + SLD + GD + + LE+ P
Sbjct: 192 AEELDLTPKQVRDYLERSRQPLSLDLKV--------GDNQDTELGE-LLEDTGLSPEDYT 242
Query: 259 DEWTLKDEVNKLINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVA 317
+L+ ++ KL+ L +++E+I L +GLD + LT I R+ +SRERVRQ+ A
Sbjct: 243 AHSSLQVDLEKLM-ADLTPQQKEVICLRFGLDNGQPLTLAKIGVRLNISRERVRQIEREA 301
Query: 318 LEKL-KHAARKRE 329
+ KL K A+ RE
Sbjct: 302 IAKLRKRKAKIRE 314
>A8YAB5_MICAE (tr|A8YAB5) Genome sequencing data, contig C249 OS=Microcystis
aeruginosa PCC 7806 GN=IPF_6533 PE=4 SV=1
Length = 318
Score = 179 bits (455), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 111/313 (35%), Positives = 189/313 (60%), Gaps = 16/313 (5%)
Query: 23 KGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRS 82
+ Y++ + LLSH E + +++++ + L++ K L+ KLG +PSD Q + + +IS
Sbjct: 12 RAYLREIGRVPLLSHEEEILYAKQVQRLIFLEKIKESLRAKLGSDPSDRQWSEAAEISEE 71
Query: 83 ELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSK 142
+LR + A+ ++ +N+RLV+S+A++Y ++ DL+Q G IG+ RG+EKFD +K
Sbjct: 72 QLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTK 131
Query: 143 GFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRL-EERGITPTIDRI 201
G++ STY YWWIRQ ++RA+ E SRT+RLP H+ E+L+ I+ A+ +L +++G TI +
Sbjct: 132 GYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQDKGRAATIAEL 191
Query: 202 AKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENI---PWHGV 258
A+ L+++ K+VR+ E + SLD + GD + + LE+ P
Sbjct: 192 AEELDLTPKQVRDYLERSRQPLSLDLKV--------GDNQDTELGE-LLEDTGLSPEDYT 242
Query: 259 DEWTLKDEVNKLINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVA 317
+L+ ++ KL+ L +++E+I L +GLD + LT I R+ +SRERVRQ+ A
Sbjct: 243 AHSSLQVDLEKLM-ADLTPQQKEVICLRFGLDNGQPLTLAKIGVRLNISRERVRQIEREA 301
Query: 318 LEKL-KHAARKRE 329
+ KL K A+ RE
Sbjct: 302 IAKLRKRKAKIRE 314
>K9XV83_STAC7 (tr|K9XV83) RNA polymerase, sigma 70 subunit, RpoD subfamily
OS=Stanieria cyanosphaera (strain ATCC 29371 / PCC 7437)
GN=Sta7437_2939 PE=4 SV=1
Length = 318
Score = 179 bits (455), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 108/305 (35%), Positives = 183/305 (60%), Gaps = 15/305 (4%)
Query: 23 KGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRS 82
+ Y+K + LL+H E + +++++ + +++ K L++KLG EP++ Q A + +I+
Sbjct: 12 RSYLKEIGRVPLLTHEEEILYAKRVQQQIKVEKIKESLQDKLGEEPTESQWADAAEITVE 71
Query: 83 ELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSK 142
ELR A+ ++ +N+RLV+S+A++Y ++ DL+Q G IG+ RG+EKFD +K
Sbjct: 72 ELRNIIQAGEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTK 131
Query: 143 GFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRL-EERGITPTIDRI 201
G++ STY YWWIRQ ++RA+ E RT+RLP H+ E+L+ I+ A+ +L +++G T TI +
Sbjct: 132 GYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLAQQKGRTATISEL 191
Query: 202 AKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENI---PWHGV 258
A+ L ++ K+VR E + SLD GD + + D LE+ P
Sbjct: 192 AEELELTPKQVREYLEKSRQPISLDVRV--------GDNNDTELGD-MLEDTGASPEDYA 242
Query: 259 DEWTLKDEVNKLINVTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVA 317
+L+ +++KL+ L ++RE+I L +GL D + LT I + +SRERVRQ+ A
Sbjct: 243 TYSSLRKDLDKLM-TDLTPQQREVISLRFGLSDGKPLTLAKIGDCLNISRERVRQIEREA 301
Query: 318 LEKLK 322
L KL+
Sbjct: 302 LAKLR 306
>I4H5M1_MICAE (tr|I4H5M1) RNA polymerase sigma factor rpoD3 OS=Microcystis
aeruginosa PCC 9807 GN=rpoD PE=4 SV=1
Length = 318
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 107/305 (35%), Positives = 185/305 (60%), Gaps = 15/305 (4%)
Query: 23 KGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRS 82
+ Y++ + LLSH E + +++++ + L++ K L+ KLG +PSD Q + + +IS
Sbjct: 12 RAYLREIGRVPLLSHEEEILYAKQVQRLIFLEKIKESLRAKLGSDPSDRQWSEAAEISEE 71
Query: 83 ELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSK 142
+LR + A+ ++ +N+RLV+S+A++Y ++ DL+Q G IG+ RG+EKFD +K
Sbjct: 72 QLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTK 131
Query: 143 GFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRL-EERGITPTIDRI 201
G++ STY YWWIRQ ++RA+ E SRT+RLP H+ E+L+ I+ A+ +L +++G TI +
Sbjct: 132 GYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQDKGRAATIAEL 191
Query: 202 AKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENI---PWHGV 258
A+ L+++ K+VR+ E + SLD + GD + + LE+ P
Sbjct: 192 AEELDLTPKQVRDYLERSRQPLSLDLKV--------GDNQDTELGE-LLEDTGLSPEDYT 242
Query: 259 DEWTLKDEVNKLINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVA 317
+L+ ++ KL+ L +++E+I L +GLD + LT I R+ +SRERVRQ+ A
Sbjct: 243 AHSSLQVDLEKLM-ADLTPQQKEVICLRFGLDNGQPLTLAKIGVRLNISRERVRQIEREA 301
Query: 318 LEKLK 322
+ KL+
Sbjct: 302 IAKLR 306
>L7E3E5_MICAE (tr|L7E3E5) RNA polymerase sigma factor OS=Microcystis aeruginosa
TAIHU98 GN=rpoD-1 PE=4 SV=1
Length = 318
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 111/313 (35%), Positives = 189/313 (60%), Gaps = 16/313 (5%)
Query: 23 KGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRS 82
+ Y++ + LLSH E + +++++ + L++ K L+ KLG +PSD Q + + +IS
Sbjct: 12 RAYLREIGRVPLLSHEEEILYAKQVQRLIFLEKIKESLRAKLGSDPSDRQWSEAAEISEE 71
Query: 83 ELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSK 142
+LR + A+ ++ +N+RLV+S+A++Y ++ DL+Q G IG+ RG+EKFD +K
Sbjct: 72 QLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTK 131
Query: 143 GFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRL-EERGITPTIDRI 201
G++ STY YWWIRQ ++RA+ E SRT+RLP H+ E+L+ I+ A+ +L +++G TI +
Sbjct: 132 GYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQDKGRAATIAEL 191
Query: 202 AKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENI---PWHGV 258
A+ L+++ K+VR+ E + SLD + GD + + LE+ P
Sbjct: 192 AEELDLTPKQVRDYLERSRQPLSLDLKV--------GDNQDTELGE-LLEDTGLSPEDYT 242
Query: 259 DEWTLKDEVNKLINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVA 317
+L+ ++ KL+ L +++E+I L +GLD + LT I R+ +SRERVRQ+ A
Sbjct: 243 AYSSLQVDLEKLM-ADLTPQQKEVICLRFGLDNGQPLTLAKIGVRLNISRERVRQIEREA 301
Query: 318 LEKL-KHAARKRE 329
+ KL K A+ RE
Sbjct: 302 IAKLRKRKAKIRE 314
>I4GLZ5_MICAE (tr|I4GLZ5) RNA polymerase sigma factor rpoD3 OS=Microcystis
aeruginosa PCC 7941 GN=rpoD PE=4 SV=1
Length = 318
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 111/313 (35%), Positives = 189/313 (60%), Gaps = 16/313 (5%)
Query: 23 KGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRS 82
+ Y++ + LLSH E + +++++ + L++ K L+ KLG +PSD Q + + +IS
Sbjct: 12 RAYLREIGRVPLLSHEEEILYAKQVQRLIFLEKIKESLRAKLGSDPSDRQWSEAAEISEE 71
Query: 83 ELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSK 142
+LR + A+ ++ +N+RLV+S+A++Y ++ DL+Q G IG+ RG+EKFD +K
Sbjct: 72 QLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTK 131
Query: 143 GFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRL-EERGITPTIDRI 201
G++ STY YWWIRQ ++RA+ E SRT+RLP H+ E+L+ I+ A+ +L +++G TI +
Sbjct: 132 GYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQDKGRAATIAEL 191
Query: 202 AKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENI---PWHGV 258
A+ L+++ K+VR+ E + SLD + GD + + LE+ P
Sbjct: 192 AEELDLTPKQVRDYLERSRQPLSLDLKV--------GDNQDTELGE-LLEDTGLSPEDYT 242
Query: 259 DEWTLKDEVNKLINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVA 317
+L+ ++ KL+ L +++E+I L +GLD + LT I R+ +SRERVRQ+ A
Sbjct: 243 AYSSLQVDLEKLM-ADLTPQQKEVICLRFGLDNGQPLTLAKIGVRLNISRERVRQIEREA 301
Query: 318 LEKL-KHAARKRE 329
+ KL K A+ RE
Sbjct: 302 IAKLRKRKAKIRE 314
>I4FIK9_MICAE (tr|I4FIK9) RNA polymerase sigma factor rpoD3 OS=Microcystis
aeruginosa PCC 9432 GN=rpoD PE=4 SV=1
Length = 318
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 111/313 (35%), Positives = 189/313 (60%), Gaps = 16/313 (5%)
Query: 23 KGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRS 82
+ Y++ + LLSH E + +++++ + L++ K L+ KLG +PSD Q + + +IS
Sbjct: 12 RAYLREIGRVPLLSHEEEILYAKQVQRLIFLEKIKESLRAKLGSDPSDRQWSEAAEISEE 71
Query: 83 ELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSK 142
+LR + A+ ++ +N+RLV+S+A++Y ++ DL+Q G IG+ RG+EKFD +K
Sbjct: 72 QLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTK 131
Query: 143 GFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRL-EERGITPTIDRI 201
G++ STY YWWIRQ ++RA+ E SRT+RLP H+ E+L+ I+ A+ +L +++G TI +
Sbjct: 132 GYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQDKGRAATIAEL 191
Query: 202 AKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENI---PWHGV 258
A+ L+++ K+VR+ E + SLD + GD + + LE+ P
Sbjct: 192 AEELDLTPKQVRDYLERSRQPLSLDLKV--------GDNQDTELGE-LLEDTGLSPEDYT 242
Query: 259 DEWTLKDEVNKLINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVA 317
+L+ ++ KL+ L +++E+I L +GLD + LT I R+ +SRERVRQ+ A
Sbjct: 243 AYSSLQVDLEKLM-ADLTPQQKEVICLRFGLDNGQPLTLAKIGVRLNISRERVRQIEREA 301
Query: 318 LEKL-KHAARKRE 329
+ KL K A+ RE
Sbjct: 302 IAKLRKRKAKIRE 314
>I4ISK0_MICAE (tr|I4ISK0) RNA polymerase sigma factor rpoD3 OS=Microcystis
aeruginosa PCC 9701 GN=rpoD PE=4 SV=1
Length = 318
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 108/310 (34%), Positives = 187/310 (60%), Gaps = 15/310 (4%)
Query: 18 LQNRSKGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASL 77
L + + Y++ + LL+H E + +++++ + L++ K LK KLG +PSD Q + +
Sbjct: 7 LTDPVRAYLREIGRVPLLTHEEEILYAKQVQRLIFLEKIKESLKAKLGSDPSDRQWSEAA 66
Query: 78 KISRSELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEK 137
+IS +LR + A+ ++ +N+RLV+S+A++Y ++ DL+Q G IG+ RG+EK
Sbjct: 67 EISEEQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEK 126
Query: 138 FDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRL-EERGITP 196
FD +KG++ STY YWWIRQ ++RA+ E SRT+RLP H+ E+L+ I+ A+ +L +++G
Sbjct: 127 FDPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQDKGRAA 186
Query: 197 TIDRIAKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENI--- 253
TI +A+ L+++ K+VR+ E + SLD + GD + + LE+
Sbjct: 187 TIAELAEELDLTPKQVRDYLERSRQPLSLDLKV--------GDNQDTELGE-LLEDTGLS 237
Query: 254 PWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQ 312
P +L+ ++ KL+ L +++E+I L +GLD + LT I R+ +SRERVRQ
Sbjct: 238 PEDYTAYSSLQVDLEKLM-ADLTPQQKEVICLRFGLDNGQPLTLAKIGVRLNISRERVRQ 296
Query: 313 VGLVALEKLK 322
+ A+ KL+
Sbjct: 297 IEREAIAKLR 306
>I4G0I4_MICAE (tr|I4G0I4) RNA polymerase sigma factor rpoD3 OS=Microcystis
aeruginosa PCC 9443 GN=rpoD PE=4 SV=1
Length = 318
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 107/305 (35%), Positives = 185/305 (60%), Gaps = 15/305 (4%)
Query: 23 KGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRS 82
+ Y++ + LLSH E + +++++ + L++ K L+ KLG +PSD Q + + +IS
Sbjct: 12 RAYLREIGRVPLLSHEEEILYAKQVQRLIFLEKIKESLRAKLGSDPSDRQWSEAAEISEE 71
Query: 83 ELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSK 142
+LR + A+ ++ +N+RLV+S+A++Y ++ DL+Q G IG+ RG+EKFD +K
Sbjct: 72 QLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTK 131
Query: 143 GFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRL-EERGITPTIDRI 201
G++ STY YWWIRQ ++RA+ E SRT+RLP H+ E+L+ I+ A+ +L +++G TI +
Sbjct: 132 GYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQDKGRAATIAEL 191
Query: 202 AKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENI---PWHGV 258
A+ L+++ K+VR+ E + SLD + GD + + LE+ P
Sbjct: 192 AEELDLTPKQVRDYLERSRQPLSLDLKV--------GDNQDTELGE-LLEDTGLSPEDYT 242
Query: 259 DEWTLKDEVNKLINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVA 317
+L+ ++ KL+ L +++E+I L +GLD + LT I R+ +SRERVRQ+ A
Sbjct: 243 AYSSLQVDLEKLM-ADLTPQQKEVICLRFGLDNGQPLTLAKIGVRLNISRERVRQIEREA 301
Query: 318 LEKLK 322
+ KL+
Sbjct: 302 IAKLR 306
>B7KAB6_CYAP7 (tr|B7KAB6) RNA polymerase, sigma 70 subunit, RpoD subfamily
OS=Cyanothece sp. (strain PCC 7424) GN=PCC7424_4527 PE=4
SV=1
Length = 318
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 105/305 (34%), Positives = 182/305 (59%), Gaps = 15/305 (4%)
Query: 23 KGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRS 82
+ Y++ + LL+H E + L+++++ ++L + K L + L EP D + A++ KI+
Sbjct: 12 RAYLREIGRVPLLTHEEEIVLAKRVQRFMALQDIKDALTQTLKREPQDSEWASAAKITEE 71
Query: 83 ELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSK 142
EL A+E++ +N+RLV+S+A++Y ++ DL+Q G IG+ RG+EKFD +K
Sbjct: 72 ELHRAIAAGKAAKEKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTK 131
Query: 143 GFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRLEE-RGITPTIDRI 201
G++ STY YWWIRQ ++RA+ E SRT+RLP H+ E+L+ I+ A+ +L + +G TI +
Sbjct: 132 GYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLSQAKGRAATISEL 191
Query: 202 AKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENI---PWHGV 258
A+ L ++ ++VR+ E + SLD + GD + + LE+ P
Sbjct: 192 AEELELTPRQVRDYLERARQPLSLDLKV--------GDNQDTELGE-LLEDTGTSPEDYA 242
Query: 259 DEWTLKDEVNKLINVTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVA 317
+L+ ++ KL++ L +++E++ L +GL D + LT I R+ +SRERVRQ+ A
Sbjct: 243 THSSLQVDLEKLMS-DLTPQQKEVLALRFGLVDGQPLTLAKIGVRLNISRERVRQIEREA 301
Query: 318 LEKLK 322
L KL+
Sbjct: 302 LSKLR 306
>Q2JNL1_SYNJB (tr|Q2JNL1) RNA polymerase sigma factor OS=Synechococcus sp.
(strain JA-2-3B'a(2-13)) GN=CYB_0662 PE=3 SV=1
Length = 361
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 100/290 (34%), Positives = 177/290 (61%), Gaps = 8/290 (2%)
Query: 35 LSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRSELRAKTIECTLA 94
+ HAE ++LS KI+ L +D+ + +++ G +PSD+ +A +L+IS S LR++ + A
Sbjct: 65 IDHAEEIELSRKIQQKLLIDQARQEWRQQRGEDPSDEALAEALQISVSTLRSRIRQGEQA 124
Query: 95 RERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWI 154
+ +L +N+RLV+S+A++Y N G DL+Q G IGL+R EKF++ +GF+ STY +WWI
Sbjct: 125 QRKLINANLRLVVSVAKKYLNRGVPFLDLIQEGNIGLIRATEKFNAERGFRFSTYAHWWI 184
Query: 155 RQGVSRALVENSRTLRLPTHLHERLSLI-RTAKFRLEERGITPTIDRIAKSLNMSQKKVR 213
RQG++R + +RT+RLP H+ +++ L+ RT + ++ +G PT +A++L + KK+R
Sbjct: 185 RQGITRCIANQARTIRLPVHMVDKVRLLKRTNRELMKLQGRRPTEAELAEALGIKVKKLR 244
Query: 214 NATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNKLINV 273
+A + SLD G G++ + + + P+ G+ +++ +V +
Sbjct: 245 MIQQAAALPLSLDVPV-----GQEGESRLGDLLQDERQEQPFQGILVQSMQQDVRSAMQ- 298
Query: 274 TLVEREREIIRLYYGLD-KECLTWEDISKRIGLSRERVRQVGLVALEKLK 322
TL ER+++ L YGLD ++ T ++ L+RER+RQ+ AL KL+
Sbjct: 299 TLKPIERQVLELRYGLDGQQARTLREVGDHFNLTRERIRQIERDALRKLR 348
>B0JTP4_MICAN (tr|B0JTP4) Group 2 RNA polymerase sigma factor OS=Microcystis
aeruginosa (strain NIES-843) GN=sigD PE=4 SV=1
Length = 318
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 107/305 (35%), Positives = 185/305 (60%), Gaps = 15/305 (4%)
Query: 23 KGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRS 82
+ Y++ + LL+H E + +++++ + L++ K LK KLG +PSD Q + + +IS
Sbjct: 12 RAYLREIGRVPLLTHEEEILYAKQVQRLIFLEKIKESLKVKLGSDPSDRQWSEAAEISEE 71
Query: 83 ELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSK 142
+LR + A+ ++ +N+RLV+S+A++Y ++ DL+Q G IG+ RG+EKFD +K
Sbjct: 72 QLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTK 131
Query: 143 GFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRL-EERGITPTIDRI 201
G++ STY YWWIRQ ++RA+ E SRT+RLP H+ E+L+ I+ A+ +L +++G TI +
Sbjct: 132 GYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQDKGRAATIAEL 191
Query: 202 AKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENI---PWHGV 258
A+ L+++ K+VR+ E + SLD + GD + + LE+ P
Sbjct: 192 AEELDLTPKQVRDYLERSRQPLSLDLKV--------GDNQDTELGE-LLEDTGLSPEDYT 242
Query: 259 DEWTLKDEVNKLINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVA 317
+L+ ++ KL+ L +++E+I L +GLD + LT I R+ +SRERVRQ+ A
Sbjct: 243 AYSSLQVDLEKLM-ADLTPQQKEVICLRFGLDNGQPLTLAKIGVRLNISRERVRQIEREA 301
Query: 318 LEKLK 322
+ KL+
Sbjct: 302 IAKLR 306
>L8LWE0_9CYAN (tr|L8LWE0) RNA polymerase sigma factor, cyanobacterial RpoD-like
family OS=Xenococcus sp. PCC 7305
GN=Xen7305DRAFT_00016980 PE=4 SV=1
Length = 318
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 105/305 (34%), Positives = 182/305 (59%), Gaps = 13/305 (4%)
Query: 23 KGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRS 82
+ Y+K + LL+H E + +++++ ++L + K L+EKLG EP+ Q A K+S
Sbjct: 12 RSYLKEIGRVDLLTHEEEIHYAKRVQREIALVKIKDSLQEKLGQEPTYSQWAKEAKLSVK 71
Query: 83 ELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSK 142
EL+ A+ ++ +N+RLV+S+A++Y ++ DL+Q G IG+ RG+EKFD +K
Sbjct: 72 ELKTTLEAGEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTK 131
Query: 143 GFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRL-EERGITPTIDRI 201
G++ STY YWWIRQ ++RA+ E RT+RLP H+ E+L+ I+ A+ +L +++G TI +
Sbjct: 132 GYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRKLAQQKGRMATIAEL 191
Query: 202 AKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLE--NIPWHGVD 259
A+ L ++ K+VR+ E + SLD + GD + + D ++ P
Sbjct: 192 AEELELTPKQVRDYLEKSRQPISLDVKV--------GDNNDTELGDMLVDMGQSPEDYAT 243
Query: 260 EWTLKDEVNKLINVTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVAL 318
+L+ ++++L++ L +++E+I L +GL D + LT I + +SRERVRQ+ AL
Sbjct: 244 SSSLRKDLSRLMS-ELTPQQQEVISLRFGLRDGKPLTLAKIGTFLSISRERVRQIEREAL 302
Query: 319 EKLKH 323
KL+
Sbjct: 303 TKLRQ 307
>I4HQ77_MICAE (tr|I4HQ77) RNA polymerase sigma factor rpoD3 OS=Microcystis
aeruginosa PCC 9809 GN=rpoD PE=4 SV=1
Length = 318
Score = 177 bits (450), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 107/305 (35%), Positives = 185/305 (60%), Gaps = 15/305 (4%)
Query: 23 KGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRS 82
+ Y++ + LL+H E + +++++ + L++ K L+ KLG EPSD Q + + +IS
Sbjct: 12 RAYLREIGRVPLLTHEEEILYAKQVQRLIFLEKIKESLRAKLGREPSDRQWSEAAEISEE 71
Query: 83 ELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSK 142
+LR + A+ ++ +N+RLV+S+A++Y ++ DL+Q G IG+ RG+EKFD +K
Sbjct: 72 QLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTK 131
Query: 143 GFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRL-EERGITPTIDRI 201
G++ STY YWWIRQ ++RA+ E SRT+RLP H+ E+L+ I+ A+ +L +++G TI +
Sbjct: 132 GYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQDKGRAATIAEL 191
Query: 202 AKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENI---PWHGV 258
A+ L+++ K+VR+ E + SLD + GD + + LE+ P
Sbjct: 192 AEELDLTPKQVRDYLERSRQPLSLDLKV--------GDNQDTELGE-LLEDTGLSPEDYT 242
Query: 259 DEWTLKDEVNKLINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVA 317
+L+ ++ KL+ L +++E+I L +GLD + LT I R+ +SRERVRQ+ A
Sbjct: 243 AYSSLQVDLEKLM-ADLTPQQKEVICLRFGLDNGQPLTLAKIGVRLNISRERVRQIEREA 301
Query: 318 LEKLK 322
+ KL+
Sbjct: 302 IAKLR 306
>I4FRP5_MICAE (tr|I4FRP5) RNA polymerase sigma factor rpoD3 OS=Microcystis
aeruginosa PCC 9717 GN=rpoD PE=4 SV=1
Length = 318
Score = 177 bits (450), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 107/305 (35%), Positives = 185/305 (60%), Gaps = 15/305 (4%)
Query: 23 KGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRS 82
+ Y++ + LL+H E + +++++ + L++ K L+ KLG EPSD Q + + +IS
Sbjct: 12 RAYLREIGRVPLLTHEEEILYAKQVQRLIFLEKIKESLRAKLGREPSDRQWSEAAEISEE 71
Query: 83 ELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSK 142
+LR + A+ ++ +N+RLV+S+A++Y ++ DL+Q G IG+ RG+EKFD +K
Sbjct: 72 QLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTK 131
Query: 143 GFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRL-EERGITPTIDRI 201
G++ STY YWWIRQ ++RA+ E SRT+RLP H+ E+L+ I+ A+ +L +++G TI +
Sbjct: 132 GYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQDKGRAATIAEL 191
Query: 202 AKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENI---PWHGV 258
A+ L+++ K+VR+ E + SLD + GD + + LE+ P
Sbjct: 192 AEELDLTPKQVRDYLERSRQPLSLDLKV--------GDNQDTELGE-LLEDTGLSPEDYT 242
Query: 259 DEWTLKDEVNKLINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVA 317
+L+ ++ KL+ L +++E+I L +GLD + LT I R+ +SRERVRQ+ A
Sbjct: 243 AYSSLQVDLEKLM-ADLTPQQKEVICLRFGLDNGQPLTLAKIGVRLNISRERVRQIEREA 301
Query: 318 LEKLK 322
+ KL+
Sbjct: 302 IAKLR 306
>B4WMN7_9SYNE (tr|B4WMN7) RNA polymerase sigma factor OS=Synechococcus sp. PCC
7335 GN=S7335_1807 PE=3 SV=1
Length = 467
Score = 177 bits (450), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 103/301 (34%), Positives = 170/301 (56%), Gaps = 7/301 (2%)
Query: 24 GYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRSE 83
+ K + LL E ++L+ ++++ + ++++ + E L P+ ++A + + +
Sbjct: 159 AFFKEMARYPLLQPTEEIELARQVRIIVEIEDYSEKASETLKRRPTHAELATAFGYTEGQ 218
Query: 84 LRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKG 143
LR K + A+ R+ SN+RLV+SIA+RY N G DL+Q G +GL R EKFD KG
Sbjct: 219 LRQKLRQARAAKRRMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGALGLNRAAEKFDPDKG 278
Query: 144 FKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRL-EERGITPTIDRIA 202
+K STY YWWIRQG++R + ++RT+RLP H+ E+L+ ++ A+ L +E TPT +A
Sbjct: 279 YKFSTYAYWWIRQGITRTIANDARTIRLPIHIVEKLNKLKKAQRELRKELQRTPTEVEVA 338
Query: 203 KSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWT 262
+L M+ +++R + K SL+ G DT + ++ P + E
Sbjct: 339 AALEMTPEQLRTLQQVQRKSLSLNHRV-----GKGEDTELMELLEDGNSLSPESQISESM 393
Query: 263 LKDEVNKLINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 321
++ E++ ++ L ERE+EII L YGL E T E++ LSRERVRQ+ A+ KL
Sbjct: 394 MRQEISDVLTEVLTEREKEIIALRYGLTTGETHTLEEVGGIFQLSRERVRQIQTKAMRKL 453
Query: 322 K 322
+
Sbjct: 454 R 454
>M0TIC0_MUSAM (tr|M0TIC0) Uncharacterized protein OS=Musa acuminata subsp.
malaccensis PE=4 SV=1
Length = 548
Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 115/314 (36%), Positives = 182/314 (57%), Gaps = 9/314 (2%)
Query: 25 YVKGVVS-EQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRSE 83
Y++G S +LLS E ++LS+ I+ L L+ + L + G +P+ Q A + I +
Sbjct: 240 YLRGTTSTSKLLSAVEELELSKGIQDLLKLERLREELVGRNGGQPTFAQWATAAGIDQKT 299
Query: 84 LRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKG 143
LR + + T ++++ SN+RLV+SIA+ Y N G + DLVQ G GL++G EKFD+SKG
Sbjct: 300 LRKRLNDGTFCKDKMIKSNIRLVISIAKNYQNAGLSLQDLVQEGYRGLVKGAEKFDASKG 359
Query: 144 FKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRL-EERGITPTIDRIA 202
FK STY +WWI+Q V R+L E SRT+RLP H+ E +R AK +L E G P +A
Sbjct: 360 FKFSTYAHWWIKQAVRRSLSEQSRTIRLPFHMVEATYRVREAKKQLYSENGRHPDYVEVA 419
Query: 203 KSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWT 262
+ +S K+V SLD++ + N P + +AD E + ++
Sbjct: 420 VATGLSMKRVETVLLTPKAPRSLDQKIGINQNLKPSEV----MADPEAETSEEILIKKF- 474
Query: 263 LKDEVNKLINVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKL 321
+K ++NK+++ TL RE++++R +GLD E + T ++I K +G+SRER+RQ+ A KL
Sbjct: 475 MKADLNKVLD-TLNPREKQVLRWRFGLDNERIKTLQEIGKLMGVSRERIRQIESCAFRKL 533
Query: 322 KHAARKREMEAMLL 335
K + R + L+
Sbjct: 534 KSKKKMRNLRQYLI 547
>B1X0Q3_CYAA5 (tr|B1X0Q3) Group 2 sigma-70 RNA polymerase sigma factor D
OS=Cyanothece sp. (strain ATCC 51142) GN=sigD PE=4 SV=1
Length = 318
Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 103/308 (33%), Positives = 181/308 (58%), Gaps = 21/308 (6%)
Query: 23 KGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRS 82
+ Y+K + LL+H E + +++++ ++L++ + + E+ G EP++ Q A + K+S+
Sbjct: 12 RAYLKEIGRVPLLTHEEEILYAKRVQRLVNLEKLREEIIEETGQEPTESQWAKAAKLSKR 71
Query: 83 ELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSK 142
E R+ A+ ++ +N+RLV+S+A++Y ++ DL+Q G IG+ RG+EKFD +K
Sbjct: 72 EFRSIVESGEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTK 131
Query: 143 GFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRL-EERGITPTIDRI 201
G++ STY YWWIRQ ++RA+ E SRT+RLP H+ E+L+ I+ A+ L +++G T+ +
Sbjct: 132 GYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRELSQQKGRAATVTEL 191
Query: 202 AKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIAD------NRLENIPW 255
A+ L+++ K+VR E + SLD GD + D E+
Sbjct: 192 AEELDLTPKQVREYLERARQPLSLDLRV--------GDNQDTELGDLLEDDGQSPEDFAT 243
Query: 256 HGVDEWTLKDEVNKLINVTLVEREREIIRLYYG-LDKECLTWEDISKRIGLSRERVRQVG 314
H +L+ ++ +L+ L +++E+I L +G LD + LT I R+ +SRERVRQ+
Sbjct: 244 HS----SLQFDLERLME-DLTSQQKEVIALRFGLLDGQPLTLAKIGSRLNISRERVRQIE 298
Query: 315 LVALEKLK 322
AL KL+
Sbjct: 299 REALSKLR 306
>G6GT77_9CHRO (tr|G6GT77) RNA polymerase, sigma 70 subunit, RpoD subfamily
OS=Cyanothece sp. ATCC 51472 GN=Cy51472DRAFT_2250 PE=4
SV=1
Length = 318
Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 103/308 (33%), Positives = 181/308 (58%), Gaps = 21/308 (6%)
Query: 23 KGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRS 82
+ Y+K + LL+H E + +++++ ++L++ + + E+ G EP++ Q A + K+S+
Sbjct: 12 RAYLKEIGRVPLLTHEEEILYAKRVQRLVNLEKLREEIIEETGQEPTESQWAKAAKLSKR 71
Query: 83 ELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSK 142
E R+ A+ ++ +N+RLV+S+A++Y ++ DL+Q G IG+ RG+EKFD +K
Sbjct: 72 EFRSIVESGEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTK 131
Query: 143 GFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRL-EERGITPTIDRI 201
G++ STY YWWIRQ ++RA+ E SRT+RLP H+ E+L+ I+ A+ L +++G T+ +
Sbjct: 132 GYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRELSQQKGRAATVTEL 191
Query: 202 AKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIAD------NRLENIPW 255
A+ L+++ K+VR E + SLD GD + D E+
Sbjct: 192 AEELDLTPKQVREYLERARQPLSLDLRV--------GDNQDTELGDLLEDDGQSPEDFAT 243
Query: 256 HGVDEWTLKDEVNKLINVTLVEREREIIRLYYG-LDKECLTWEDISKRIGLSRERVRQVG 314
H +L+ ++ +L+ L +++E+I L +G LD + LT I R+ +SRERVRQ+
Sbjct: 244 HS----SLQFDLERLME-DLTSQQKEVIALRFGLLDGQPLTLAKIGSRLNISRERVRQIE 298
Query: 315 LVALEKLK 322
AL KL+
Sbjct: 299 REALSKLR 306
>I4GS23_MICAE (tr|I4GS23) RNA polymerase sigma factor rpoD3 OS=Microcystis
aeruginosa PCC 9806 GN=rpoD PE=4 SV=1
Length = 318
Score = 177 bits (449), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 107/305 (35%), Positives = 185/305 (60%), Gaps = 15/305 (4%)
Query: 23 KGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRS 82
+ Y++ + LLSH E + +++++ + L++ K L+ KLG +PSD Q + + +IS
Sbjct: 12 RAYLREIGRVPLLSHEEEILYAKQVQRLIFLEKIKESLRAKLGRDPSDRQWSEAAEISEE 71
Query: 83 ELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSK 142
+LR + A+ ++ +N+RLV+S+A++Y ++ DL+Q G IG+ RG+EKFD +K
Sbjct: 72 QLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTK 131
Query: 143 GFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRL-EERGITPTIDRI 201
G++ STY YWWIRQ ++RA+ E SRT+RLP H+ E+L+ I+ A+ +L +++G TI +
Sbjct: 132 GYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQDKGRAATIAEL 191
Query: 202 AKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLEN---IPWHGV 258
A+ L+++ K+VR+ E + SLD + GD + + LE+ P
Sbjct: 192 AEELDLTPKQVRDYLERARQPLSLDLKV--------GDNQDTELGE-LLEDKGLSPEDYT 242
Query: 259 DEWTLKDEVNKLINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVA 317
+L+ ++ KL+ L +++E+I L +GLD + LT I R+ +SRERVRQ+ A
Sbjct: 243 AYSSLQVDLEKLM-ADLTPQQKEVICLRFGLDNGQPLTLAKIGVRLNISRERVRQIEREA 301
Query: 318 LEKLK 322
+ KL+
Sbjct: 302 IAKLR 306
>B0C890_ACAM1 (tr|B0C890) RNA polymerase sigma-70 factor OS=Acaryochloris marina
(strain MBIC 11017) GN=rpoD PE=4 SV=1
Length = 318
Score = 177 bits (449), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 103/311 (33%), Positives = 187/311 (60%), Gaps = 9/311 (2%)
Query: 14 SPELLQNRSKGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQI 73
+ E+ ++ + Y++ + LL+H E V ++++ + L + L E+L +P+D +
Sbjct: 3 TKEIAKDSVRSYLREIGRVPLLTHEEEVTFGKQVQHLIKLQTIRDELAEQLERQPNDAEW 62
Query: 74 AASLKISRSELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLR 133
+A+ K+S +EL+ E A+ ++ +N+RLV+S+A++Y ++ DL+Q G IG+ R
Sbjct: 63 SAAAKLSEAELQKALHEGEAAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQR 122
Query: 134 GIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRLEER- 192
G+EKFD +KG++ STY YWWIRQ ++RA+ E RT+RLP H+ E+L+ I+ + +L ++
Sbjct: 123 GVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKTQRQLSQKL 182
Query: 193 GITPTIDRIAKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLEN 252
G TI +A SL+++ K+VR E + SLD G DT + ++ E+
Sbjct: 183 GRAATISELATSLDLTTKQVREYLERARQPLSLDVRV-----GDNQDTELGELIEDPSES 237
Query: 253 IPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVR 311
P + + +L+ ++ +L+ L +++++++ L +GLD + LT I R+ +SRERVR
Sbjct: 238 -PENFTLQASLRGDLERLM-ADLTDQQQQVLHLRFGLDDGQPLTLAKIGDRLSISRERVR 295
Query: 312 QVGLVALEKLK 322
Q+ AL KL+
Sbjct: 296 QIEREALSKLR 306
>I4IAS0_9CHRO (tr|I4IAS0) RNA polymerase sigma factor rpoD3 OS=Microcystis sp.
T1-4 GN=rpoD PE=4 SV=1
Length = 318
Score = 176 bits (447), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 106/305 (34%), Positives = 185/305 (60%), Gaps = 15/305 (4%)
Query: 23 KGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRS 82
+ Y++ + LL+H E + +++++ + L++ K L+ +LG EPSD Q + + +IS
Sbjct: 12 RSYLREIGRVPLLTHEEEILYAKQVQRLIFLEKIKESLRSQLGREPSDRQWSEAAEISEE 71
Query: 83 ELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSK 142
+LR + A+ ++ +N+RLV+S+A++Y ++ DL+Q G IG+ RG+EKFD +K
Sbjct: 72 QLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTK 131
Query: 143 GFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRL-EERGITPTIDRI 201
G++ STY YWWIRQ ++RA+ E SRT+RLP H+ E+L+ I+ A+ +L +++G TI +
Sbjct: 132 GYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQDKGRAATIAEL 191
Query: 202 AKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENI---PWHGV 258
A+ L+++ K+VR+ E + SLD + GD + + LE+ P
Sbjct: 192 AEELDLTPKQVRDYLERSRQPLSLDLKV--------GDNQDTELGE-LLEDTGLSPEDYT 242
Query: 259 DEWTLKDEVNKLINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVA 317
+L+ ++ KL+ L +++E+I L +GLD + LT I R+ +SRERVRQ+ A
Sbjct: 243 AYSSLQVDLEKLM-ADLTPQQKEVICLRFGLDNGQPLTLAKIGVRLNISRERVRQIEREA 301
Query: 318 LEKLK 322
+ KL+
Sbjct: 302 IAKLR 306
>K9XHA2_9CHRO (tr|K9XHA2) RNA polymerase sigma factor OS=Gloeocapsa sp. PCC 7428
GN=Glo7428_2515 PE=3 SV=1
Length = 390
Score = 176 bits (446), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 109/304 (35%), Positives = 178/304 (58%), Gaps = 9/304 (2%)
Query: 25 YVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRSEL 84
Y++ + +LL E ++L+ KI L ++ + RL E+L EP D + A ++++S
Sbjct: 85 YLQEIGRIRLLRADEEIELARKIAELLEMERVRERLLEQLDREPQDSEWAEAVQLSLPTF 144
Query: 85 RAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGF 144
R + A++++ SN+RLV+SIA++Y N G DL+Q G +GL+R EKFD KG+
Sbjct: 145 RYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGY 204
Query: 145 KISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLI-RTAKFRLEERGITPTIDRIAK 203
K STY WWIRQ ++RA+ + SRT+RLP HL+E +S I +T K +E G PT + IA
Sbjct: 205 KFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIAT 264
Query: 204 SLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTL 263
+ M+ +K+R ++ SL+ + GD +I + P V + L
Sbjct: 265 RMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD----FIESD--GETPEDQVSKSLL 318
Query: 264 KDEVNKLINVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLK 322
++++ K+++ +L RER+++RL YGLD + T E+I + ++RER+RQ+ AL KL+
Sbjct: 319 REDLEKVLD-SLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 377
Query: 323 HAAR 326
H R
Sbjct: 378 HPNR 381
>K9X1I3_9NOST (tr|K9X1I3) RNA polymerase sigma factor OS=Cylindrospermum stagnale
PCC 7417 GN=Cylst_3438 PE=3 SV=1
Length = 390
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 109/304 (35%), Positives = 177/304 (58%), Gaps = 9/304 (2%)
Query: 25 YVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRSEL 84
Y++ + +LL E ++L+ KI L L+ + RL E+L +P D + AA +++
Sbjct: 85 YLQEIGRIRLLRADEEIELARKIADLLELERVRERLSERLERDPKDSEWAAEVQLPLPAF 144
Query: 85 RAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGF 144
R + A++++ SN+RLV+SIA++Y N G DL+Q G +GL+R EKFD KG+
Sbjct: 145 RYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGY 204
Query: 145 KISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLI-RTAKFRLEERGITPTIDRIAK 203
K STY WWIRQ ++RA+ + SRT+RLP HL+E +S I +T K +E G PT + IA
Sbjct: 205 KFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIAT 264
Query: 204 SLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTL 263
+ M+ +K+R ++ SL+ + GD +I + P V + L
Sbjct: 265 RMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD----FIESD--GETPEDQVSKNLL 318
Query: 264 KDEVNKLINVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLK 322
++++ K+++ +L RER+++RL YGLD + T E+I + ++RER+RQ+ AL KL+
Sbjct: 319 REDLEKVLD-SLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 377
Query: 323 HAAR 326
H R
Sbjct: 378 HPNR 381
>B1X4M1_PAUCH (tr|B1X4M1) Type II alternative RNA polymerase sigma factor,
sigma-70 family protein OS=Paulinella chromatophora
GN=rpoD PE=4 SV=1
Length = 321
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 107/307 (34%), Positives = 186/307 (60%), Gaps = 12/307 (3%)
Query: 23 KGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRS 82
+ Y+K + LL+H + + L +++ + + E + +L+ K G +P+ +++A SL +S +
Sbjct: 16 RSYLKEISRIPLLTHEQEITLGRQVQELICIQETEQKLELKNGIKPTQEELANSLDLSIN 75
Query: 83 ELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSK 142
+++ K I A+E++ SN+RLV+SIA++Y E+ DLVQ G IGL+RG+EKFD ++
Sbjct: 76 QVKRKIIHGKRAKEQMVSSNLRLVVSIAKKYTKRSMELLDLVQEGTIGLIRGVEKFDPTR 135
Query: 143 GFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRLEER-GITPTIDRI 201
G+K STY YWWIRQG++RA+ E SRT+RLP H+ E L+ ++ A+ L + G TPT+ +
Sbjct: 136 GYKFSTYAYWWIRQGITRAISEQSRTIRLPIHITEELNKLKKAQRDLSQSLGRTPTVIEL 195
Query: 202 AKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEW 261
AK + +++K+V+ + SL+ + G DT + + +E +P V+
Sbjct: 196 AKMIKLTEKEVKELLCHAKQPVSLEMKI-----GDGDDTVLLELLPSEIE-LPEEYVNRK 249
Query: 262 TLKDEVNKLINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQV---GLVA 317
L+ ++ L+ L E + I+++ YG D E LT I + +G+SR+RVR + G+
Sbjct: 250 CLRRDLLALVE-QLPEIQVRILKMRYGFDSTEPLTLTGIGRVLGMSRDRVRNLERDGINR 308
Query: 318 LEKLKHA 324
L+KL +
Sbjct: 309 LQKLSKS 315
>Q2JRK5_SYNJA (tr|Q2JRK5) RNA polymerase sigma factor OS=Synechococcus sp.
(strain JA-3-3Ab) GN=CYA_2635 PE=3 SV=1
Length = 361
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 102/296 (34%), Positives = 179/296 (60%), Gaps = 10/296 (3%)
Query: 35 LSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRSELRAKTIECTLA 94
+ HAE ++LS KI+ L +D+ + +++ G +PSD+++AA+L+I S LR++ + A
Sbjct: 65 IDHAEEIELSRKIQQKLLIDQARREWRQQWGQDPSDEELAAALQIPVSTLRSRIRQGEQA 124
Query: 95 RERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWI 154
+ +L +N+RLV+S+A++Y N G DL+Q G +GL+R EKF++ +GF+ STY +WWI
Sbjct: 125 QRKLINANLRLVVSVAKKYLNRGVPFLDLIQEGNMGLIRATEKFNAERGFRFSTYAHWWI 184
Query: 155 RQGVSRALVENSRTLRLPTHLHERLSLI-RTAKFRLEERGITPTIDRIAKSLNMSQKKVR 213
RQG++R + +RT+RLP H+ +++ L+ RT + ++ RG PT +A++L + KK+R
Sbjct: 185 RQGITRCIANQARTIRLPVHMVDKVRLLKRTNRELMKARGRRPTEAELAEALGIKVKKLR 244
Query: 214 NATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNKLINV 273
+A + SLD P G G++ + + + P+ + +L+ +V +
Sbjct: 245 MIQQAAALPLSLD---VPV--GQEGESRLGDLLPDERQEQPFEEILVQSLRQDVRSAMQ- 298
Query: 274 TLVEREREIIRLYYGLD-KECLTWEDISKRIGLSRERVRQVGLVALEKLK--HAAR 326
L ER+++ L YGLD + T ++ L+RER+RQ+ AL KL+ H +R
Sbjct: 299 ALKPIERQVLELRYGLDGQRARTLREVGDHFNLTRERIRQIERDALRKLRLGHPSR 354
>A0YTZ3_LYNSP (tr|A0YTZ3) RNA polymerase sigma factor OS=Lyngbya sp. (strain PCC
8106) GN=L8106_10432 PE=3 SV=1
Length = 391
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 108/304 (35%), Positives = 177/304 (58%), Gaps = 9/304 (2%)
Query: 25 YVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRSEL 84
Y++ + +LL E ++L+ +I L L+ + +L E CEP D + A+++ ++ E
Sbjct: 86 YLQEIGRIRLLRADEEIELARRIADLLELERIREKLVEHNHCEPEDREWASAVDMALPEF 145
Query: 85 RAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGF 144
R + A++++ SN+RLV+SIA++Y N G DL+Q G +GL+R EKFD KG+
Sbjct: 146 RRRLYLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGY 205
Query: 145 KISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLI-RTAKFRLEERGITPTIDRIAK 203
K STY WWIRQ ++RA+ + SRT+RLP HL+E +S I +T K +E G PT + IA
Sbjct: 206 KFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIAT 265
Query: 204 SLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTL 263
+ M+ +K+R ++ SL+ + GD +I + P V + L
Sbjct: 266 RMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD----FIESD--GETPEDQVSKNLL 319
Query: 264 KDEVNKLINVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLK 322
++++ +++ TL RER+++RL YGLD + T E+I + ++RER+RQ+ AL KL+
Sbjct: 320 REDLESVLD-TLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 378
Query: 323 HAAR 326
H R
Sbjct: 379 HPNR 382
>K9V798_9CYAN (tr|K9V798) RNA polymerase, sigma 70 subunit, RpoD subfamily
OS=Calothrix sp. PCC 6303 GN=Cal6303_4659 PE=4 SV=1
Length = 318
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 104/307 (33%), Positives = 180/307 (58%), Gaps = 15/307 (4%)
Query: 23 KGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRS 82
+ Y++ + LLSH E +K ++++ + L+E + L KLG EP+ ++ A + ++
Sbjct: 12 RTYLREIGKVPLLSHEEEIKFGKQVQRAVVLNEVRESLALKLGHEPTLEEWAIASELEPL 71
Query: 83 ELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSK 142
EL + A+ R+ +N+RLV+S+A++Y ++ DL+Q G IG+ RG+EKFD +K
Sbjct: 72 ELNQAIADADEAKRRMVEANLRLVVSVAKKYLKRNVDLLDLIQEGSIGMQRGVEKFDPTK 131
Query: 143 GFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRLEER-GITPTIDRI 201
G++ STY YWWIRQ ++RA+ E RT+RLP H+ E+L+ I+ A+ +L ++ G P+ +
Sbjct: 132 GYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQKLGRAPSAGEL 191
Query: 202 AKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENI---PWHGV 258
AK L+++ +VR E SLD GD H + + LE+ P V
Sbjct: 192 AKELDLTPAQVREYLEKARLPLSLDLRL--------GDNHDTELGE-MLEDTGASPEEFV 242
Query: 259 DEWTLKDEVNKLINVTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVA 317
+ +L +++ +L+ L ++RE+I + +GL D + +T I + + +SRERVRQ+ A
Sbjct: 243 MQSSLSNDLERLM-ANLTPQQREVISMRFGLKDGQSMTLARIGEILNISRERVRQIEREA 301
Query: 318 LEKLKHA 324
L KL+ +
Sbjct: 302 LTKLRKS 308
>K9RSJ7_SYNP3 (tr|K9RSJ7) RNA polymerase sigma factor OS=Synechococcus sp.
(strain ATCC 27167 / PCC 6312) GN=Syn6312_1261 PE=3 SV=1
Length = 382
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 109/309 (35%), Positives = 178/309 (57%), Gaps = 14/309 (4%)
Query: 25 YVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSD-----DQIAASLKI 79
Y++ + +LL E ++L+ KI L L+ + R+ E+L C+P D + A+ +K+
Sbjct: 72 YLQEIGRIRLLRADEEIELARKIADLLELERIRDRISEQLDCDPDDLERHPEPWASEVKM 131
Query: 80 SRSELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFD 139
+ R + A+E++ SN+RLV+SIA++Y N G DL+Q G +GL+R EKFD
Sbjct: 132 TLPAFRHRLFVGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 191
Query: 140 SSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLI-RTAKFRLEERGITPTI 198
KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E +S I +T K +E G PT
Sbjct: 192 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTE 251
Query: 199 DRIAKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGV 258
+ IA+ + M+ +K+R ++ SL+ + GD +I + P V
Sbjct: 252 EEIAERMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD----FIESD--GETPEDQV 305
Query: 259 DEWTLKDEVNKLINVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVA 317
+ L++++ ++ TL RER++++L YGLD + T E+I + ++RER+RQ+ A
Sbjct: 306 SKHLLREDLETVL-CTLSPRERDVLKLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKA 364
Query: 318 LEKLKHAAR 326
L KL+H R
Sbjct: 365 LRKLRHPNR 373
>K9TSM8_9CYAN (tr|K9TSM8) RNA polymerase sigma factor OS=Chroococcidiopsis
thermalis PCC 7203 GN=Chro_0252 PE=3 SV=1
Length = 416
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 118/318 (37%), Positives = 184/318 (57%), Gaps = 35/318 (11%)
Query: 35 LSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRSELR--------- 85
+SHA K IK ++L E + RL +LG PS ++ AAS IS EL+
Sbjct: 98 VSHA--AKDDSIIKTYITLIEAQERLTSELGHRPSLERWAASAGISVMELKPALAVGKRR 155
Query: 86 -AKTIECTL------------ARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLL 132
A+ + T+ A+E + +N+RLV+S+A++Y N G E+ DLVQ G +GL
Sbjct: 156 WAEIAKITVEELEQIQNDGIHAKEHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLE 215
Query: 133 RGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRL-EE 191
R +EKFD +KG++ STY YWWIRQG++RA+ SRT+RLP H+ E+L+ I+ A+ +L +E
Sbjct: 216 RAVEKFDPTKGYRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKLAQE 275
Query: 192 RGITPTIDRIAKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLE 251
+G TPTI+ IA L M+ +VR + + SL+ + G DT + +N +
Sbjct: 276 KGRTPTIEDIALELEMTAPQVREVLLRVPRSVSLETKV-----GKEKDTELGDLLEN--D 328
Query: 252 NI-PWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRER 309
+I P + L ++ +L+ L +RER++I + +GL D C + +I + + LSRER
Sbjct: 329 SISPEELLMREALHRDLQQLL-ADLTDRERDVILMRFGLGDGHCYSLAEIGRALDLSRER 387
Query: 310 VRQVGLVALEKLKHAARK 327
VRQ+ AL+KL+ R+
Sbjct: 388 VRQIESKALQKLRQPKRR 405
>K9VNL0_9CYAN (tr|K9VNL0) RNA polymerase sigma factor OS=Oscillatoria
nigro-viridis PCC 7112 GN=Osc7112_5455 PE=3 SV=1
Length = 357
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 102/292 (34%), Positives = 174/292 (59%), Gaps = 9/292 (3%)
Query: 34 LLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRSELRAKTIECTL 93
LL+ AE V+L+ +++ ++LDE + RL+++L P+ ++AA+L IS ++L+ +C
Sbjct: 59 LLTAAEEVELARRVQELVALDELEQRLQQELDRVPTKAELAAALGISETQLQQLRHQCQS 118
Query: 94 ARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 153
A+ ++ SN+RLV+SIA+RY N G DL+Q G +GL R EKFD KG+K STY YWW
Sbjct: 119 AKRKMISSNLRLVVSIAKRYLNRGVPFLDLIQEGALGLNRAAEKFDPEKGYKFSTYAYWW 178
Query: 154 IRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRLEERGI--TPTIDRIAKSLNMSQKK 211
IRQG++R + RT+RLP H+ E+L+ ++ +R +R + PT +A+ + +S +
Sbjct: 179 IRQGITRTIANQGRTIRLPVHIVEQLNKLKKV-YRDLKRSLQRNPTETELAREMEVSCEH 237
Query: 212 VRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNKLI 271
+R + + SL+ G + + ++ P ++E ++ ++ +++
Sbjct: 238 LRYLQQVRRQSLSLNHRI-----GSEESSELLDVLEDNATQSPEAQMNEMMMRQDILEVL 292
Query: 272 NVTLVEREREIIRLYYG-LDKECLTWEDISKRIGLSRERVRQVGLVALEKLK 322
+ L ERE+EI+ + YG L E T E++S LSRERVRQ+ A+ KL+
Sbjct: 293 DSILTEREKEIVAMRYGLLTGEPYTLEEVSSLFNLSRERVRQIQNKAMRKLR 344
>D3ER12_UCYNA (tr|D3ER12) RNA polymerase sigma factor, sigma-70 family/RNA
polymerase sigma factor, cyanobacterial RpoD-like family
OS=cyanobacterium UCYN-A GN=UCYN_12460 PE=4 SV=1
Length = 318
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 103/308 (33%), Positives = 177/308 (57%), Gaps = 21/308 (6%)
Query: 23 KGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRS 82
+ Y++ + LL+H E + +++++ + L++++ ++ G EP++ Q A + +ISR
Sbjct: 12 RSYLREIGRVPLLTHEEEILYAKRVQRFVDLEKYRELFTKETGKEPTETQWAQAARISRR 71
Query: 83 ELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSK 142
EL + A+ ++ +N+RLV+S+A++Y ++ DL+Q G IG+ RG+EKFD +K
Sbjct: 72 ELHSAIASGEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTK 131
Query: 143 GFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRLEE-RGITPTIDRI 201
G++ STY YWWIRQ ++RA+ E SRT+RLP H+ E+L+ I+ A+ L + RG TI +
Sbjct: 132 GYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRELSQARGRDATIAEL 191
Query: 202 AKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIAD------NRLENIPW 255
A+ L+++ K+VR E + SLD GD + D E+
Sbjct: 192 AEELDLTPKQVREYLERARQPLSLDLRV--------GDNQDTELGDLLEDDGPSPEDFAT 243
Query: 256 HGVDEWTLKDEVNKLINVTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVG 314
H ++ L +++ L +++E+I L +GL D + LT I R+ +SRERVRQ+
Sbjct: 244 HSSLQFDL-----EILMEDLTTQQKEVIALRFGLTDGQPLTLAKIGCRLNISRERVRQIE 298
Query: 315 LVALEKLK 322
AL KL+
Sbjct: 299 REALSKLR 306
>A3ITT4_9CHRO (tr|A3ITT4) RNA polymerase sigma factor SigD OS=Cyanothece sp.
CCY0110 GN=CY0110_06104 PE=4 SV=1
Length = 318
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 106/305 (34%), Positives = 183/305 (60%), Gaps = 15/305 (4%)
Query: 23 KGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRS 82
+ Y+K + LL+H E + +++++ ++L++ + + E+ G EP++ Q A + KISR
Sbjct: 12 RAYLKEIGRVPLLTHEEEILYAKRVQRLVNLEKLRDDIIEETGQEPTEIQWAKTAKISRK 71
Query: 83 ELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSK 142
EL++ A+ ++ +N+RLV+S+A++Y ++ DL+Q G IG+ RG+EKFD +K
Sbjct: 72 ELQSIIEIGEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTK 131
Query: 143 GFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRL-EERGITPTIDRI 201
G++ STY YWWIRQ ++RA+ E SRT+RLP H+ E+L+ I+ A+ L +++G T+ +
Sbjct: 132 GYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRELSQQKGRAATVVEL 191
Query: 202 AKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLEN---IPWHGV 258
A+ L+++ K+VR E + SLD GD + D LE+ P
Sbjct: 192 AEELDLTPKQVREYLERARQPLSLDLRV--------GDNQDTELGD-LLEDDGQSPEDFA 242
Query: 259 DEWTLKDEVNKLINVTLVEREREIIRLYYG-LDKECLTWEDISKRIGLSRERVRQVGLVA 317
+L+ ++ +L+ L +++E+I L +G LD + LT I R+ +SRERVRQ+ A
Sbjct: 243 THSSLQFDLERLME-DLTSQQKEVIALRFGLLDGQPLTLAKIGSRLNISRERVRQIEREA 301
Query: 318 LEKLK 322
L KL+
Sbjct: 302 LSKLR 306
>Q3MBX2_ANAVT (tr|Q3MBX2) Sigma 28 (Flagella/Sporulation) OS=Anabaena variabilis
(strain ATCC 29413 / PCC 7937) GN=Ava_1892 PE=4 SV=1
Length = 332
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 102/307 (33%), Positives = 180/307 (58%), Gaps = 15/307 (4%)
Query: 23 KGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRS 82
+ Y++ + LLSH E ++ ++++ +L E + L +LG EPS ++ A + I+ +
Sbjct: 26 RTYLREIGRVPLLSHEEEIRYGKQVQRSTTLQEVREELATQLGREPSIEEWAKAANINSA 85
Query: 83 ELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSK 142
+L + +A+ ++ +N+RLV+S+A++Y ++ DL+Q G IG+ RG+EKFD +K
Sbjct: 86 DLLGAIADGEVAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTK 145
Query: 143 GFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRLEER-GITPTIDRI 201
G++ STY YWWIRQ ++RA+ E +RT+RLP H+ E+L+ I+ A+ +L +R G PT +
Sbjct: 146 GYRFSTYAYWWIRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRQLSQRLGRAPTAGEL 205
Query: 202 AKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEW 261
A L ++ K+VR E SLD GD + + + LE+ P +++
Sbjct: 206 ANELELTPKQVREYLEKARLPLSLDLRL--------GDNYDTELGE-MLED-PGASPEDF 255
Query: 262 TLKDEVNKLINV---TLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVA 317
++ ++ + V L +++E+I L +GL D + LT I + + +SRERVRQ+ A
Sbjct: 256 VMQSSLSNDLEVLMEQLTPQQKEVITLRFGLIDGQALTLARIGEILNISRERVRQIEREA 315
Query: 318 LEKLKHA 324
L KL+ +
Sbjct: 316 LTKLRKS 322
>C7QVB1_CYAP0 (tr|C7QVB1) RNA polymerase, sigma 70 subunit, RpoD subfamily
OS=Cyanothece sp. (strain PCC 8802) GN=Cyan8802_3060
PE=4 SV=1
Length = 318
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 105/305 (34%), Positives = 182/305 (59%), Gaps = 15/305 (4%)
Query: 23 KGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRS 82
+ Y++ + LL+H E + +++++ ++L+ K L E+LG EP+ Q A + K+++
Sbjct: 12 RAYLREIGRVPLLTHEEEILYAKRVQRFVALETLKESLTEELGQEPTIAQWAKAAKMTQK 71
Query: 83 ELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSK 142
ELR+ A+ ++ +N+RLV+S+A++Y ++ DL+Q G IG+ RG+EKFD +K
Sbjct: 72 ELRSAIEAGEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTK 131
Query: 143 GFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRL-EERGITPTIDRI 201
G++ STY YWWIRQ ++RA+ E SRT+RLP H+ E+L+ I+ A+ +L +E+G TI +
Sbjct: 132 GYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLSQEKGRAATIAEL 191
Query: 202 AKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENI---PWHGV 258
A+ L ++ ++VR E + SLD GD + D LE+ P
Sbjct: 192 AEELELTPRQVREYLERARQPLSLDLRV--------GDNQDTELGD-LLEDTGQSPEDYA 242
Query: 259 DEWTLKDEVNKLINVTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVA 317
+L+ ++++L+ L +++E++ L +GL D + LT I + +SRERVRQ+ A
Sbjct: 243 THSSLQLDLDRLME-ELTPQQKEVLALRFGLSDGKPLTLAKIGSILNISRERVRQIEREA 301
Query: 318 LEKLK 322
L KL+
Sbjct: 302 LAKLR 306
>B7JX54_CYAP8 (tr|B7JX54) RNA polymerase, sigma 70 subunit, RpoD subfamily
OS=Cyanothece sp. (strain PCC 8801) GN=PCC8801_3061 PE=4
SV=1
Length = 318
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 105/305 (34%), Positives = 182/305 (59%), Gaps = 15/305 (4%)
Query: 23 KGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRS 82
+ Y++ + LL+H E + +++++ ++L+ K L E+LG EP+ Q A + K+++
Sbjct: 12 RAYLREIGRVPLLTHEEEILYAKRVQRFVALETLKESLTEELGQEPTIAQWAKAAKMTQK 71
Query: 83 ELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSK 142
ELR+ A+ ++ +N+RLV+S+A++Y ++ DL+Q G IG+ RG+EKFD +K
Sbjct: 72 ELRSAIEAGEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTK 131
Query: 143 GFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRL-EERGITPTIDRI 201
G++ STY YWWIRQ ++RA+ E SRT+RLP H+ E+L+ I+ A+ +L +E+G TI +
Sbjct: 132 GYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLSQEKGRAATIAEL 191
Query: 202 AKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENI---PWHGV 258
A+ L ++ ++VR E + SLD GD + D LE+ P
Sbjct: 192 AEELELTPRQVREYLERARQPLSLDLRV--------GDNQDTELGD-LLEDTGQSPEDYA 242
Query: 259 DEWTLKDEVNKLINVTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVA 317
+L+ ++++L+ L +++E++ L +GL D + LT I + +SRERVRQ+ A
Sbjct: 243 THSSLQLDLDRLME-ELTPQQKEVLALRFGLSDGKPLTLAKIGSILNISRERVRQIEREA 301
Query: 318 LEKLK 322
L KL+
Sbjct: 302 LAKLR 306
>D7UB90_VITVI (tr|D7UB90) Putative uncharacterized protein OS=Vitis vinifera
GN=VIT_15s0024g00640 PE=4 SV=1
Length = 575
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 110/314 (35%), Positives = 186/314 (59%), Gaps = 9/314 (2%)
Query: 25 YVKGVVS-EQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRSE 83
Y++G S +LL+ E ++LSE I+ L L++ + L+E+ G +P+ Q AA+ + +
Sbjct: 267 YLRGTTSTSRLLTATEELELSEGIQDLLKLEKLQEDLEERFGVKPTFAQWAAAAGVDQKT 326
Query: 84 LRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKG 143
LR +T ++++ SN+RLV+SIA+ Y G + DLVQ G GL+RG EKFD+SKG
Sbjct: 327 LRRRTNYGIRCKDKMIKSNIRLVISIAKNYQGAGMNIQDLVQEGCRGLVRGAEKFDASKG 386
Query: 144 FKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRL-EERGITPTIDRIA 202
FK STY +WWI+Q V ++L + SRT+RLP H+ E ++ A+ +L E G P + +A
Sbjct: 387 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVA 446
Query: 203 KSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWT 262
++ +S K++ SLD++ + N P + IAD E + ++
Sbjct: 447 EATGLSMKRLNAVLLTPKAPRSLDQKIGINQNLKPSEV----IADPDAETAEELLIKQF- 501
Query: 263 LKDEVNKLINVTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKL 321
+++++ K++N +L RE+++IR YGL D T ++I + +G+SRER+RQ+ A KL
Sbjct: 502 MREDLEKVLN-SLNPREKQVIRWRYGLEDGRTKTLQEIGELMGVSRERIRQIESCAFRKL 560
Query: 322 KHAARKREMEAMLL 335
K+ R + ++ L+
Sbjct: 561 KNKRRTKHLQQYLV 574
>I0KYV9_9ACTO (tr|I0KYV9) RNA polymerase sigma factor OS=Micromonospora lupini
str. Lupac 08 GN=rpoD PE=3 SV=1
Length = 338
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 108/316 (34%), Positives = 183/316 (57%), Gaps = 28/316 (8%)
Query: 23 KGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRS 82
+ Y+ G+ +LL+ A+ V L+ +I+ GL DE + C P +++ A L++ +
Sbjct: 42 RAYLNGIGRTKLLTAAQEVDLARRIEAGLFADEKLAT------CTPVSEELRADLELIVA 95
Query: 83 ELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSK 142
E RA A++ L +N+RLV+SIA+RY G DL+Q G +GL+R +EKFD +K
Sbjct: 96 EGRA-------AKDHLLEANLRLVVSIAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYAK 148
Query: 143 GFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLS-LIRTAKFRLEERGITPTIDRI 201
G+K STY WWIRQ ++RA+ + +RT+R+P H+ E+++ ++R + G PT+ +
Sbjct: 149 GYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEQVNRMVRARRELAVTLGREPTVAEV 208
Query: 202 AKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHC----YIADNRLENIPWHG 257
A++L++ + +V ++ S DRE SL+ GD ++A P G
Sbjct: 209 ARALDIPEFQV-------IELISYDREPV-SLDQAVGDDGESALGDFVASVDPRTDPGEG 260
Query: 258 VDEWTLKDEVNKLINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLV 316
+ L++EV+ +++ TL +RE+ +IRL +GLD T +++ + GLSRER+RQ+ V
Sbjct: 261 AAQGELRNEVSIVLS-TLSQREQAVIRLRFGLDDGRQRTLDEVGREFGLSRERIRQIEKV 319
Query: 317 ALEKLKHAARKREMEA 332
L KL+ R + +EA
Sbjct: 320 TLLKLRAPERAQRLEA 335
>Q4C529_CROWT (tr|Q4C529) Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region
4:Sigma-70 region 1.2 OS=Crocosphaera watsonii WH 8501
GN=CwatDRAFT_4410 PE=4 SV=1
Length = 318
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 105/305 (34%), Positives = 182/305 (59%), Gaps = 15/305 (4%)
Query: 23 KGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRS 82
+ Y+K + LLSH E + +++++ ++L++ + + ++ G EP++ Q A + K+SR
Sbjct: 12 RAYLKEIGRVPLLSHEEEILYAKRVQRLINLEKLREEIIQETGKEPTNSQWAKAAKLSRK 71
Query: 83 ELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSK 142
E + A+ ++ +N+RLV+S+A++Y ++ DL+Q G IG+ RG+EKFD +K
Sbjct: 72 EFCSVVEAGEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTK 131
Query: 143 GFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRL-EERGITPTIDRI 201
G++ STY YWWIRQ ++RA+ E SRT+RLP H+ E+L+ I+ A+ L +++G TI +
Sbjct: 132 GYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRELSQQKGRAATISEL 191
Query: 202 AKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLEN---IPWHGV 258
A+ L+++ K+VR+ E + SLD GD + D LE+ P
Sbjct: 192 AEELDLTPKQVRDYLERSRQPLSLDLRV--------GDNQDTELGD-LLEDEGQSPEDFA 242
Query: 259 DEWTLKDEVNKLINVTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVA 317
+L+ ++ KL+ L +++++I L +GL D + LT I R+ +SRERVRQ+ A
Sbjct: 243 THSSLQFDLEKLME-DLTIQQKQVIALRFGLMDGQPLTLAKIGSRLNISRERVRQIEREA 301
Query: 318 LEKLK 322
L KL+
Sbjct: 302 LSKLR 306
>B1XMU3_SYNP2 (tr|B1XMU3) RNA polymerase sigma factor OS=Synechococcus sp.
(strain ATCC 27264 / PCC 7002 / PR-6) GN=sigE PE=3 SV=1
Length = 398
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 104/300 (34%), Positives = 173/300 (57%), Gaps = 31/300 (10%)
Query: 59 RLKEKLGCEPSDDQIAASLKISRSELR-----------------AKTIECTL-----ARE 96
RL +LGC PS ++ A + + R+ LR K ++ L A+E
Sbjct: 102 RLAIELGCRPSLNRWAQEMNLERAVLRDIIRQGKQRWAEQVGLSVKELDSILKAGAKAKE 161
Query: 97 RLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQ 156
+ +N+RLV+S+A++Y N G E+ DL+Q G +GL R ++KFD +KG++ STY YWWIRQ
Sbjct: 162 HMIQANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVDKFDPTKGYRFSTYAYWWIRQ 221
Query: 157 GVSRALVENSRTLRLPTHLHERLSLIRTAKFRLEE-RGITPTIDRIAKSLNMSQKKVRNA 215
G++RA+ SRT+RLP H+ E+L+ I+ A+ ++ + +G TP++D +A++L M+ ++VR
Sbjct: 222 GITRAIATQSRTIRLPVHVTEKLNKIKKAQRQISQTQGCTPSLDDVAQALEMTPEQVREV 281
Query: 216 TEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNKLINVTL 275
+ + + SL+ + GD A P + +L+ +++ L+ L
Sbjct: 282 LQKVPRSVSLEIRVGKDRDTELGDLLETQDAS------PEENLVRESLQRDLHNLL-TEL 334
Query: 276 VEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKREMEAML 334
+RERE+I+L YGL D + + +I + + LSRERVRQ+ AL+KL+ R+ M L
Sbjct: 335 TDREREVIQLRYGLGDGKTYSLAEIGRMLELSRERVRQIEAKALQKLRQPKRRNIMRDYL 394
>K9YRT3_DACSA (tr|K9YRT3) RNA polymerase sigma factor OS=Dactylococcopsis salina
PCC 8305 GN=Dacsa_0937 PE=3 SV=1
Length = 388
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 109/305 (35%), Positives = 178/305 (58%), Gaps = 11/305 (3%)
Query: 25 YVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRSEL 84
Y++ + +LL E ++L+ KI L+ ++ L+ +GCEP+D++ A + + +
Sbjct: 82 YLQEIGRIRLLRADEEIELARKIADLSELERTRTELEATIGCEPTDEEWAEEVGQALPKF 141
Query: 85 RAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGF 144
R + + A+E++ SN+RLV+SIA++Y N G DL+Q G +GL+R EKFD KG+
Sbjct: 142 RRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGY 201
Query: 145 KISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLI-RTAKFRLEERGITPTIDRIAK 203
K STY WWIRQ ++RA+ + SRT+RLP HL+E +S I +T K +E PT + IA+
Sbjct: 202 KFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQELARKPTEEEIAE 261
Query: 204 SLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYI-ADNRLENIPWHGVDEWT 262
+ M+ +K+R ++ SL+ + GD +I AD P V +
Sbjct: 262 RMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD----FIEADG---ETPEDEVSKSL 314
Query: 263 LKDEVNKLINVTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKL 321
L++++ +++ TL RER+++RL YGL D T E+I + ++RER+RQ+ AL KL
Sbjct: 315 LREDLEDVLD-TLSPRERDVLRLRYGLEDGRMKTLEEIGQIFNVTRERIRQIEAKALRKL 373
Query: 322 KHAAR 326
+H R
Sbjct: 374 RHPNR 378
>K9PWX1_9CYAN (tr|K9PWX1) RNA polymerase sigma factor OS=Leptolyngbya sp. PCC
7376 GN=Lepto7376_0935 PE=3 SV=1
Length = 396
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 109/308 (35%), Positives = 173/308 (56%), Gaps = 31/308 (10%)
Query: 51 LSLDEHKSRLKEKLGCEPSDDQIAASLKISRSELRAKT-----------------IECTL 93
L L E RL +LGC P+ + AA + + R LR K IE L
Sbjct: 92 LKLIEVHDRLAIELGCRPTMGRWAAEVDLDREVLRQKIREGKQHWAACVDLDIKEIEAVL 151
Query: 94 -----ARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKIST 148
A+E + +N+RLV+S+A++Y N G E+ DL+Q G +GL R ++KFD +KG++ ST
Sbjct: 152 KAGAKAKEHMIQANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVDKFDPTKGYRFST 211
Query: 149 YVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRLEE-RGITPTIDRIAKSLNM 207
Y YWWIRQG++RA+ SRT+RLP H+ E+L+ I+ A+ ++ + +G TP+++ +AK LNM
Sbjct: 212 YAYWWIRQGITRAIATQSRTIRLPVHVTEKLNKIKKAQRQISQTQGCTPSLEDVAKVLNM 271
Query: 208 SQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEV 267
+ +VR + + + SL+ + GD A P + +L+ ++
Sbjct: 272 TAAQVREVLQKVPRSVSLEIRVGQDRDTELGDLLETKDAS------PEENLVRESLQRDL 325
Query: 268 NKLINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAAR 326
L+ L +RE+E+I+L YGLD + + +I + + LSRERVRQ+ AL+KL+ R
Sbjct: 326 RNLL-AELTDREQEVIQLRYGLDDGKTHSLAEIGRVLELSRERVRQIEAKALQKLRQPKR 384
Query: 327 KREMEAML 334
+ M L
Sbjct: 385 RNLMRDYL 392
>F4XPJ0_9CYAN (tr|F4XPJ0) RNA polymerase sigma factor OS=Moorea producens 3L
GN=LYNGBM3L_34960 PE=3 SV=1
Length = 373
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 112/305 (36%), Positives = 175/305 (57%), Gaps = 11/305 (3%)
Query: 25 YVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRSEL 84
Y++ + +LL E ++L+ KI L L+ + RL E+L EP D + A + +
Sbjct: 68 YLQEIGRIRLLRADEEIELARKIADLLELERVRERLSEQLEREPGDREWATEVDMELPAF 127
Query: 85 RAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGF 144
R + A+E++ SN+RLV+SIA++Y N G DL+Q G +GL+R EKFD KG+
Sbjct: 128 RYRLHVGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGY 187
Query: 145 KISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLI-RTAKFRLEERGITPTIDRIAK 203
K STY WWIRQ ++RA+ + SRT+RLP HL+E +S I +T K +E G PT + IA
Sbjct: 188 KFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIAD 247
Query: 204 SLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYI-ADNRLENIPWHGVDEWT 262
+ M+ +K+R ++ SL+ + GD +I AD P V +
Sbjct: 248 RMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD----FIEADG---ETPEDQVSKNL 300
Query: 263 LKDEVNKLINVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKL 321
L++++ +++ TL RER+++RL YGLD + T E+I + ++RER+RQ+ AL KL
Sbjct: 301 LREDLESVLD-TLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKL 359
Query: 322 KHAAR 326
+H R
Sbjct: 360 RHPNR 364
>G5J3J9_CROWT (tr|G5J3J9) Cyanobacteria-specific RpoD-like sigma factor, type-2 @
Group 2 RNA polymerase sigma factor OS=Crocosphaera
watsonii WH 0003 GN=CWATWH0003_2075 PE=4 SV=1
Length = 318
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 105/305 (34%), Positives = 182/305 (59%), Gaps = 15/305 (4%)
Query: 23 KGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRS 82
+ Y+K + LLSH E + +++++ ++L++ + + ++ G EP++ Q A + K+SR
Sbjct: 12 RAYLKEIGRVPLLSHEEEILYAKRVQRLVNLEKLREEIIQETGKEPTNSQWAKAAKLSRK 71
Query: 83 ELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSK 142
E + A+ ++ +N+RLV+S+A++Y ++ DL+Q G IG+ RG+EKFD +K
Sbjct: 72 EFCSVVEAGEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTK 131
Query: 143 GFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRL-EERGITPTIDRI 201
G++ STY YWWIRQ ++RA+ E SRT+RLP H+ E+L+ I+ A+ L +++G TI +
Sbjct: 132 GYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRELSQQKGRAATISEL 191
Query: 202 AKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLEN---IPWHGV 258
A+ L+++ K+VR+ E + SLD GD + D LE+ P
Sbjct: 192 AEELDLTPKQVRDYLERSRQPLSLDLRV--------GDNQDTELGD-LLEDEGQSPEDFA 242
Query: 259 DEWTLKDEVNKLINVTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVA 317
+L+ ++ KL+ L +++++I L +GL D + LT I R+ +SRERVRQ+ A
Sbjct: 243 THSSLQFDLEKLME-DLTIQQKQVIALRFGLMDGQPLTLAKIGSRLNISRERVRQIEREA 301
Query: 318 LEKLK 322
L KL+
Sbjct: 302 LSKLR 306
>Q3MDA3_ANAVT (tr|Q3MDA3) RNA polymerase sigma factor OS=Anabaena variabilis
(strain ATCC 29413 / PCC 7937) GN=Ava_1410 PE=3 SV=1
Length = 390
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 109/304 (35%), Positives = 177/304 (58%), Gaps = 9/304 (2%)
Query: 25 YVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRSEL 84
Y++ + +LL E ++L+ KI L L+ + RL EKL +P D + A ++++
Sbjct: 85 YLQEIGRIRLLRADEEIELARKIADLLELERVRERLSEKLERDPRDSEWAEAVQLPLPAF 144
Query: 85 RAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGF 144
R + A++++ SN+RLV+SIA++Y N G DL+Q G +GL+R EKFD KG+
Sbjct: 145 RYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGY 204
Query: 145 KISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLI-RTAKFRLEERGITPTIDRIAK 203
K STY WWIRQ ++RA+ + SRT+RLP HL+E +S I +T K +E G PT + IA
Sbjct: 205 KFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIAT 264
Query: 204 SLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTL 263
+ M+ +K+R ++ SL+ + GD +I + P V + L
Sbjct: 265 RMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD----FIESD--GETPEDQVSKNLL 318
Query: 264 KDEVNKLINVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLK 322
++++ K+++ +L RER+++RL YGLD + T E+I + ++RER+RQ+ AL KL+
Sbjct: 319 REDLEKVLD-SLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 377
Query: 323 HAAR 326
H R
Sbjct: 378 HPNR 381
>R7QJX2_CHOCR (tr|R7QJX2) Stackhouse genomic scaffold, scaffold_331 OS=Chondrus
crispus GN=CHC_T00005988001 PE=4 SV=1
Length = 506
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 106/314 (33%), Positives = 174/314 (55%), Gaps = 8/314 (2%)
Query: 15 PELLQNRSKGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIA 74
P L N + Y++ + ++LL E V L +I+ + L + +G +PS ++ A
Sbjct: 187 PTLADNTVRWYLQLIGGDRLLRAEEEVTLGRQIRDLMQWQRMFVELADSIGRQPSTNEWA 246
Query: 75 ASLKISRSELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRG 134
+ + ++ + + A++R+ + N+RLV+SIA+RY N G ++DL+Q G +GL+R
Sbjct: 247 QYMGMDETDFATRLLHAKRAKDRMIVCNLRLVVSIAKRYMNRGMPLSDLIQEGTLGLIRA 306
Query: 135 IEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTA-KFRLEERG 193
EKFD+ +GFK STY WW+RQ V+R++ + SRT+RLP HL++ + IR A KF E G
Sbjct: 307 CEKFDAERGFKFSTYATWWVRQAVTRSIADQSRTIRLPVHLYDTILAIRRATKFLTNELG 366
Query: 194 ITPTIDRIAKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENI 253
P IA ++ +K+R + LD S + L T I + E
Sbjct: 367 RPPLEQEIADYCKITVEKLRATRVNMQSALPLDCPLSSSDDAL---TLSDVIESD--EES 421
Query: 254 PWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQ 312
P V+ L+D++ ++N +L RER+++R+ YGLD T E+I + +++ERVRQ
Sbjct: 422 PEDRVESSLLRDDLEHVVN-SLTPRERDVVRMRYGLDDGRAKTLEEIGRAFDVTKERVRQ 480
Query: 313 VGLVALEKLKHAAR 326
+ AL KL+H R
Sbjct: 481 IESKALRKLRHPYR 494
>Q9L4T2_NOSP7 (tr|Q9L4T2) RNA polymerase sigma factor OS=Nostoc punctiforme
(strain ATCC 29133 / PCC 73102) GN=sigA PE=3 SV=1
Length = 389
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 108/304 (35%), Positives = 177/304 (58%), Gaps = 9/304 (2%)
Query: 25 YVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRSEL 84
Y++ + +LL E ++L+ KI L L+ + RL E+L +P D + A ++++
Sbjct: 84 YLQEIGRIRLLRADEEIELARKIADLLELERVRERLSEQLDRDPRDSEWAEAVQLPLPAF 143
Query: 85 RAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGF 144
R + A++++ SN+RLV+SIA++Y N G DL+Q G +GL+R EKFD KG+
Sbjct: 144 RYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGY 203
Query: 145 KISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLI-RTAKFRLEERGITPTIDRIAK 203
K STY WWIRQ ++RA+ + SRT+RLP HL+E +S I +T K +E G PT + IA
Sbjct: 204 KFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIAT 263
Query: 204 SLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTL 263
+ M+ +K+R ++ SL+ + GD +I + P V + L
Sbjct: 264 RMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD----FIESD--GETPEDQVSKNLL 317
Query: 264 KDEVNKLINVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLK 322
++++ K+++ +L RER+++RL YGLD + T E+I + ++RER+RQ+ AL KL+
Sbjct: 318 REDLEKVLD-SLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 376
Query: 323 HAAR 326
H R
Sbjct: 377 HPNR 380
>D7E0T9_NOSA0 (tr|D7E0T9) RNA polymerase, sigma 70 subunit, RpoD subfamily
OS=Nostoc azollae (strain 0708) GN=Aazo_0572 PE=4 SV=1
Length = 332
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 103/307 (33%), Positives = 180/307 (58%), Gaps = 15/307 (4%)
Query: 23 KGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRS 82
+ Y++ + LL+H E + ++++ +L E + L +LG +P+ ++ AAS ++
Sbjct: 26 RTYLREIGRVPLLTHEEEIHYGKQVQRCTTLYEVRENLATQLGYQPTLEEWAASAQVEPV 85
Query: 83 ELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSK 142
EL E +A+ R+ +N+RLV+S+A++Y ++ DL+Q G IG+ RG+EKFD +K
Sbjct: 86 ELNTAIAEGEIAKRRMVEANLRLVVSVAKKYIKRNIDLLDLIQEGSIGMQRGVEKFDPTK 145
Query: 143 GFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRLEER-GITPTIDRI 201
G++ STY YWWIRQ ++RA+ E +RT+RLP H+ E+L+ I+ A+ +L ++ G PT +
Sbjct: 146 GYRFSTYAYWWIRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRQLSQKLGRAPTAIEL 205
Query: 202 AKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLEN---IPWHGV 258
A L ++ ++VR E SLD GD + + + LE+ P V
Sbjct: 206 ADELELTPRQVRECLEKARLPLSLDLRL--------GDNYDTELGE-MLEDTGATPEDFV 256
Query: 259 DEWTLKDEVNKLINVTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVA 317
+ +L ++ +L+ L +++E+I+L +GL D + LT I + + +SRERVRQ+ A
Sbjct: 257 IQSSLSSDIERLMK-ELTPQQKEVIKLRFGLIDGQALTLSKIGEILNISRERVRQIEREA 315
Query: 318 LEKLKHA 324
L KL+ +
Sbjct: 316 LTKLRKS 322
>B2JB50_NOSP7 (tr|B2JB50) RNA polymerase, sigma 70 subunit, RpoD family OS=Nostoc
punctiforme (strain ATCC 29133 / PCC 73102)
GN=Npun_BF004 PE=4 SV=1
Length = 316
Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 103/312 (33%), Positives = 183/312 (58%), Gaps = 19/312 (6%)
Query: 23 KGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRS 82
+ Y+K + LL+ + + + ++ ++++E +S L +L +P+D ++A SL + +
Sbjct: 10 RSYLKEIGRYPLLTPDQEITNARLVQQMMAVEEQRSNLALQLNRQPTDLELATSLGQNEA 69
Query: 83 ELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSK 142
EL++ + A++++ +N+RLV+S+A++Y N + DL+Q G +GL RGIEKFD +K
Sbjct: 70 ELQSVIQQGQKAKQKMVTANLRLVVSVAKKYQNYSLDFLDLLQEGALGLQRGIEKFDPNK 129
Query: 143 GFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRLEER-GITPTIDRI 201
G+K+STYVYWWI Q ++RA+ + SRT+RLP H++E+L+ IR + +L + G P + I
Sbjct: 130 GYKLSTYVYWWITQSITRAVADKSRTIRLPIHINEKLNKIRRVQQQLSQSLGRPPVVAEI 189
Query: 202 AKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGV--D 259
A+SLN+S ++R + + SL++ GD +AD +P G+ D
Sbjct: 190 AESLNLSPNQIREYLQISKPLVSLEKRV--------GDEGESELAD----ILPMDGISLD 237
Query: 260 EWTLKDEVNK---LINVTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGL 315
E + + + + L R+RE++ L +GL D + LT ++KR+ LSRE +R+
Sbjct: 238 EQITLESLQQDLAKLLALLKPRQREVLTLRFGLSDNQQLTLSQVAKRLNLSRETIRKTEH 297
Query: 316 VALEKLKHAARK 327
+AL L+ K
Sbjct: 298 LALSILRSHQNK 309
>Q39515_CYACA (tr|Q39515) Chloroplast RNA polymerase sigma subunit OS=Cyanidium
caldarium GN=sigA PE=4 SV=1
Length = 591
Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 107/316 (33%), Positives = 181/316 (57%), Gaps = 10/316 (3%)
Query: 23 KGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRS 82
+ Y++ + QLL E ++LS+++ + + L++ + +E+ G P++ + A
Sbjct: 279 RSYLREIGRYQLLHPGEEIELSKQVCILMDLEQFQRSFREEHGKSPTESEWAQGCGYGDD 338
Query: 83 --ELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDS 140
+LR + A+ER+ +N+RLV+SIA+RY N G + DL+Q G IGL+RG+EKFD+
Sbjct: 339 VEKLREHIRDGRKAKERMVTANLRLVVSIAKRYSNRGVALQDLIQEGSIGLIRGVEKFDA 398
Query: 141 SKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRLE-ERGITPTID 199
+GF+ STY WWIRQ ++RA+ ++SR++RLP H+H+ +SLIR L+ E G P+ +
Sbjct: 399 ERGFRFSTYATWWIRQSITRAISDSSRSIRLPVHVHDTISLIRKQTKALQVELGRPPSEE 458
Query: 200 RIAKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVD 259
I +S+ + + K R E + SL+ P +G D H + E
Sbjct: 459 EICESVGIDRAKYRLVMECSRNIVSLE---TPLRSG--DDVHFLGESLIAPEERAEENCS 513
Query: 260 EWTLKDEVNKLINVTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVAL 318
TL++ + K+++ L RERE+IR+ +GL D T E++ R ++RER+RQ+ AL
Sbjct: 514 RDTLRESIEKVLHC-LSTREREVIRMRFGLTDGRPRTLEEVGSRFNVTRERIRQIESKAL 572
Query: 319 EKLKHAARKREMEAML 334
+KL+ A ++ L
Sbjct: 573 KKLRTPAENNFLDEYL 588
>Q3ALS7_SYNSC (tr|Q3ALS7) RNA polymerase sigma factor OS=Synechococcus sp.
(strain CC9605) GN=Syncc9605_0681 PE=3 SV=1
Length = 435
Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 110/304 (36%), Positives = 179/304 (58%), Gaps = 9/304 (2%)
Query: 25 YVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRSEL 84
Y++ + +LL E ++L+ KI L L+E ++ + G EP + + AA +++
Sbjct: 130 YLQEIGRIRLLRPDEEIELARKIADLLYLEELAAQFESDNGREPDNKEWAALVEMPLIRF 189
Query: 85 RAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGF 144
R + + A+E++ SN+RLV+SIA++Y N G DL+Q G +GL+R EKFD KG+
Sbjct: 190 RRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGY 249
Query: 145 KISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLI-RTAKFRLEERGITPTIDRIAK 203
K STY WWIRQ ++RA+ + SRT+RLP HL+E +S I +T K +E G PT + IA+
Sbjct: 250 KFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAE 309
Query: 204 SLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTL 263
S+ M+ +K+R ++ SL+ + G D+ + +EN P V + L
Sbjct: 310 SMEMTIEKLRFIAKSAQLPISLE-----TPIGKEEDSRLGDFIEADIEN-PEQDVAKNLL 363
Query: 264 KDEVNKLINVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLK 322
++++ ++ TL RER+++RL YGLD + T E+I + ++RER+RQ+ AL KL+
Sbjct: 364 REDLEGVL-ATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLR 422
Query: 323 HAAR 326
H R
Sbjct: 423 HPNR 426
>K7W4G2_9NOST (tr|K7W4G2) RNA polymerase sigma factor OS=Anabaena sp. 90 GN=sigA
PE=3 SV=1
Length = 391
Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 109/304 (35%), Positives = 176/304 (57%), Gaps = 9/304 (2%)
Query: 25 YVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRSEL 84
Y++ + +LL E ++L+ KI L L+ + RL E+L +P D + AA + +
Sbjct: 86 YLQEIGRIRLLRADEEIELARKIAELLELERARERLCERLERDPRDSEWAAEVSLPLPTF 145
Query: 85 RAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGF 144
R + A++++ SN+RLV+SIA++Y N G DL+Q G +GL+R EKFD KG+
Sbjct: 146 RYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGY 205
Query: 145 KISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLI-RTAKFRLEERGITPTIDRIAK 203
K STY WWIRQ ++RA+ + SRT+RLP HL+E +S I +T K +E G PT + IA
Sbjct: 206 KFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIAT 265
Query: 204 SLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTL 263
+ M+ +K+R ++ SL+ + GD +I + P V + L
Sbjct: 266 RMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD----FIESD--GETPEDQVSKNLL 319
Query: 264 KDEVNKLINVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLK 322
++++ K+++ +L RER+++RL YGLD + T E+I + ++RER+RQ+ AL KL+
Sbjct: 320 REDLEKVLD-SLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 378
Query: 323 HAAR 326
H R
Sbjct: 379 HPNR 382
>D0CLH5_9SYNE (tr|D0CLH5) RNA polymerase sigma factor OS=Synechococcus sp. WH
8109 GN=SH8109_2432 PE=3 SV=1
Length = 458
Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 110/304 (36%), Positives = 179/304 (58%), Gaps = 9/304 (2%)
Query: 25 YVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRSEL 84
Y++ + +LL E ++L+ KI L L+E ++ + G EP + + AA +++
Sbjct: 153 YLQEIGRIRLLRPDEEIELARKIADLLYLEELAAQFESDNGREPDNKEWAALVEMPLIRF 212
Query: 85 RAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGF 144
R + + A+E++ SN+RLV+SIA++Y N G DL+Q G +GL+R EKFD KG+
Sbjct: 213 RRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGY 272
Query: 145 KISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLI-RTAKFRLEERGITPTIDRIAK 203
K STY WWIRQ ++RA+ + SRT+RLP HL+E +S I +T K +E G PT + IA+
Sbjct: 273 KFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAE 332
Query: 204 SLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTL 263
S+ M+ +K+R ++ SL+ + G D+ + +EN P V + L
Sbjct: 333 SMEMTIEKLRFIAKSAQLPISLE-----TPIGKEEDSRLGDFIEADIEN-PEQDVAKNLL 386
Query: 264 KDEVNKLINVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLK 322
++++ ++ TL RER+++RL YGLD + T E+I + ++RER+RQ+ AL KL+
Sbjct: 387 REDLEGVL-ATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLR 445
Query: 323 HAAR 326
H R
Sbjct: 446 HPNR 449
>K9XY46_STAC7 (tr|K9XY46) RNA polymerase sigma factor OS=Stanieria cyanosphaera
(strain ATCC 29371 / PCC 7437) GN=Sta7437_3976 PE=3 SV=1
Length = 372
Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 109/304 (35%), Positives = 174/304 (57%), Gaps = 9/304 (2%)
Query: 25 YVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRSEL 84
Y++ + +LL E ++L+ KI L L+ + R+ ++L PSD + A + + E
Sbjct: 67 YLQEIGRIRLLRAEEEIELARKIADLLELERIRERMADRLERYPSDAEWAEEVNMRLPEF 126
Query: 85 RAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGF 144
R + A++++ SN+RLV+SIA++Y N G DL+Q G +GL+R EKFD KG+
Sbjct: 127 RRRLFYGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGY 186
Query: 145 KISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLI-RTAKFRLEERGITPTIDRIAK 203
K STY WWIRQ ++RA+ + SRT+RLP HL+E +S I +T K +E G PT + IA
Sbjct: 187 KFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIAT 246
Query: 204 SLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTL 263
+ M+ +K+R ++ SL+ + GD AD P V + L
Sbjct: 247 RMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIE---ADG---ETPEDQVSKSLL 300
Query: 264 KDEVNKLINVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLK 322
++++ +++ TL RER+++RL YGLD + T E+I + ++RER+RQ+ AL KL+
Sbjct: 301 REDLENVLD-TLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 359
Query: 323 HAAR 326
H R
Sbjct: 360 HPNR 363
>K9Q8G4_9NOSO (tr|K9Q8G4) RNA polymerase sigma factor OS=Nostoc sp. PCC 7107
GN=Nos7107_0427 PE=3 SV=1
Length = 391
Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 108/304 (35%), Positives = 177/304 (58%), Gaps = 9/304 (2%)
Query: 25 YVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRSEL 84
Y++ + +LL E ++L+ KI L L+ + RL E+L +P D + A ++++
Sbjct: 86 YLQEIGRIRLLRADEEIELARKIADLLELERVRERLSEQLDRDPRDSEWAEAVQLPLPAF 145
Query: 85 RAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGF 144
R + A++++ SN+RLV+SIA++Y N G DL+Q G +GL+R EKFD KG+
Sbjct: 146 RYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGY 205
Query: 145 KISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLI-RTAKFRLEERGITPTIDRIAK 203
K STY WWIRQ ++RA+ + SRT+RLP HL+E +S I +T K +E G PT + IA
Sbjct: 206 KFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIAT 265
Query: 204 SLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTL 263
+ M+ +K+R ++ SL+ + GD +I + P V + L
Sbjct: 266 RMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD----FIESD--GETPEDQVSKNLL 319
Query: 264 KDEVNKLINVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLK 322
++++ K+++ +L RER+++RL YGLD + T E+I + ++RER+RQ+ AL KL+
Sbjct: 320 REDLEKVLD-SLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 378
Query: 323 HAAR 326
H R
Sbjct: 379 HPNR 382
>M7E3T8_9STRE (tr|M7E3T8) RNA polymerase sigma factor RpoD OS=Streptococcus
sobrinus DSM 20742 GN=D823_04067 PE=4 SV=1
Length = 369
Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 93/245 (37%), Positives = 157/245 (64%), Gaps = 10/245 (4%)
Query: 93 LARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYW 152
+A++RLA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGFK STY W
Sbjct: 130 MAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATW 189
Query: 153 WIRQGVSRALVENSRTLRLPTHLHERLS-LIRTAKFRLEERGITPTIDRIAKSLNMSQKK 211
WIRQ ++RA+ + +RT+R+P H+ E ++ L+R + L+E G PT ++IA+ ++M+ K
Sbjct: 190 WIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDK 249
Query: 212 VRNATEAISKVFSLDREAFPSLNGLPGDTH-HCYIADNRLENIPWHGVDEWTLKDEVNKL 270
VR + + SL+ G D+H +I D +EN P L++++N++
Sbjct: 250 VREILKIAQEPVSLETPI-----GEEDDSHLGDFIEDEVIEN-PVDYTTRIVLREQLNEV 303
Query: 271 INVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKHAARKRE 329
++ TL +RE ++RL +GLD + T ED+ K ++RER+RQ+ AL KL+H +R ++
Sbjct: 304 LD-TLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQ 362
Query: 330 MEAML 334
++ +
Sbjct: 363 LKDFM 367
>K9WH45_9CYAN (tr|K9WH45) RNA polymerase sigma factor OS=Microcoleus sp. PCC 7113
GN=Mic7113_4030 PE=3 SV=1
Length = 373
Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 110/305 (36%), Positives = 175/305 (57%), Gaps = 11/305 (3%)
Query: 25 YVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRSEL 84
Y++ + +LL E ++L+ KI L L+ + RL ++L EP D + A + +
Sbjct: 68 YLQEIGRIRLLRADEEIELARKIADLLELERIRDRLSDQLEREPQDSEWATEVNMPLQAF 127
Query: 85 RAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGF 144
R + A++++ SN+RLV+SIA++Y N G DL+Q G +GL+R EKFD KG+
Sbjct: 128 RHRLYVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGY 187
Query: 145 KISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLI-RTAKFRLEERGITPTIDRIAK 203
K STY WWIRQ ++RA+ + SRT+RLP HL+E +S I +T K +E G PT + IA
Sbjct: 188 KFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMGRKPTEEEIAD 247
Query: 204 SLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYI-ADNRLENIPWHGVDEWT 262
+ M+ +K+R ++ SL+ + GD +I AD P V +
Sbjct: 248 RMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD----FIEADG---ETPEDQVSKNL 300
Query: 263 LKDEVNKLINVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKL 321
L++++ +++ TL RER+++RL YGLD + T E+I + ++RER+RQ+ AL KL
Sbjct: 301 LREDLESVLD-TLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKL 359
Query: 322 KHAAR 326
+H R
Sbjct: 360 RHPNR 364
>B8LQB0_PICSI (tr|B8LQB0) Putative uncharacterized protein OS=Picea sitchensis
PE=2 SV=1
Length = 495
Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 109/322 (33%), Positives = 185/322 (57%), Gaps = 15/322 (4%)
Query: 22 SKGYVKGVV-------SEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIA 74
SKG++ + S +LL+ +E V+LS I+ + LD +++ KEK G EP+ Q A
Sbjct: 178 SKGHISDSIRLLRDWSSSRLLTASEEVELSRGIQDLIKLDRIRAKYKEKTGKEPTLAQWA 237
Query: 75 ASLKISRSELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRG 134
+ + + L+ + + +++ N+RLV+S+A+ Y N G + DL+Q G +GL+R
Sbjct: 238 EVIGVDQKTLKMRLEVGRDSFDKIINCNLRLVISVAKNYQNRGLSLQDLIQAGSMGLMRS 297
Query: 135 IEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTA-KFRLEERG 193
EKFD S+GFK STY YWWIRQ +++AL E SRT+RLP H+ E ++ IRTA + +E
Sbjct: 298 AEKFDYSRGFKFSTYAYWWIRQSITKALTEQSRTIRLPVHIVESMTRIRTAWRLLYQEHK 357
Query: 194 ITPTIDRIAKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENI 253
PT + +A+ +S ++R+ T SLDR ++ + +AD E+
Sbjct: 358 RDPTKEEVAEVAGISMTRLRHVTRCSRVPTSLDRCVGKDMD----EKFSEIVADTNSEST 413
Query: 254 PWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQ 312
V + K +++++++ TL RE++++RL YGLD + + ++ + LSRERVRQ
Sbjct: 414 E-TIVSKELFKKDLDRVLD-TLTAREKQVVRLRYGLDDGRMKSLHEVGENFSLSRERVRQ 471
Query: 313 VGLVALEKLKHAARKREMEAML 334
+ + A+ KL+ R + ++ L
Sbjct: 472 IEMKAMRKLRQNHRTQHLKHYL 493
>K6E178_SPIPL (tr|K6E178) RNA polymerase sigma factor SigD OS=Arthrospira
platensis str. Paraca GN=APPUASWS_10982 PE=4 SV=1
Length = 319
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 99/304 (32%), Positives = 177/304 (58%), Gaps = 13/304 (4%)
Query: 23 KGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRS 82
+ Y++ + LL+H + + ++++ L E ++ L ++LG EP++ Q A + +S +
Sbjct: 13 RAYLREIGRVPLLTHEQEILYGKQVQQATLLQEKRNELAKQLGYEPTEAQWAELVNLSVA 72
Query: 83 ELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSK 142
+L+ + LA+ ++ +N+RLV+S+A++Y ++ DL+Q G IG+ RG+EKFD +K
Sbjct: 73 QLQHILHQGQLAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTK 132
Query: 143 GFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRLEER-GITPTIDRI 201
G++ STY YWWIRQ ++RA+ E RT+RLP H+ E+L+ I+ A+ +L ++ G T++ +
Sbjct: 133 GYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLAQQLGRAATMNEL 192
Query: 202 AKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIAD--NRLENIPWHGVD 259
A L+++ K++R E SLD GD + D N P
Sbjct: 193 AAELDLTPKQIREYLEKSRLPLSLDLRV--------GDNQDTELVDLLEDTTNSPEQFAL 244
Query: 260 EWTLKDEVNKLINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVAL 318
+L+ ++ L+ L +++R+++ L +GLD + LT I R+ +SRERVRQ+ AL
Sbjct: 245 NSSLRSDLESLM-TDLTDQQRQVLALRFGLDDGQTLTLAKIGDRLNISRERVRQIEREAL 303
Query: 319 EKLK 322
KL+
Sbjct: 304 TKLR 307
>K1VW29_SPIPL (tr|K1VW29) RNA polymerase sigma 70 subunit RpoD family
OS=Arthrospira platensis C1 GN=SPLC1_S200860 PE=4 SV=1
Length = 331
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 99/304 (32%), Positives = 177/304 (58%), Gaps = 13/304 (4%)
Query: 23 KGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRS 82
+ Y++ + LL+H + + ++++ L E ++ L ++LG EP++ Q A + +S +
Sbjct: 25 RAYLREIGRVPLLTHEQEIVYGKQVQQATLLQEKRNELAKQLGYEPTEAQWAELVNLSVA 84
Query: 83 ELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSK 142
+L+ + LA+ ++ +N+RLV+S+A++Y ++ DL+Q G IG+ RG+EKFD +K
Sbjct: 85 QLQHILHQGQLAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTK 144
Query: 143 GFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRLEER-GITPTIDRI 201
G++ STY YWWIRQ ++RA+ E RT+RLP H+ E+L+ I+ A+ +L ++ G T++ +
Sbjct: 145 GYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLAQQLGRAATMNEL 204
Query: 202 AKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIAD--NRLENIPWHGVD 259
A L+++ K++R E SLD GD + D N P
Sbjct: 205 AAELDLTPKQIREYLEKSRLPLSLDLRV--------GDNQDTELVDLLEDTSNSPEQFAL 256
Query: 260 EWTLKDEVNKLINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVAL 318
+L+ ++ L+ L +++R+++ L +GLD + LT I R+ +SRERVRQ+ AL
Sbjct: 257 NSSLRSDLESLM-TDLTDQQRQVLALRFGLDDGQTLTLAKIGDRLNISRERVRQIEREAL 315
Query: 319 EKLK 322
KL+
Sbjct: 316 TKLR 319
>B5VZJ5_SPIMA (tr|B5VZJ5) RNA polymerase, sigma 70 subunit, RpoD family
OS=Arthrospira maxima CS-328 GN=AmaxDRAFT_1997 PE=4 SV=1
Length = 331
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 99/304 (32%), Positives = 177/304 (58%), Gaps = 13/304 (4%)
Query: 23 KGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRS 82
+ Y++ + LL+H + + ++++ L E ++ L ++LG EP++ Q A + +S +
Sbjct: 25 RAYLREIGRVPLLTHEQEIVYGKQVQQATLLQEKRNELAKQLGYEPTEAQWAELVNLSVA 84
Query: 83 ELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSK 142
+L+ + LA+ ++ +N+RLV+S+A++Y ++ DL+Q G IG+ RG+EKFD +K
Sbjct: 85 QLQHILHQGQLAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTK 144
Query: 143 GFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRLEER-GITPTIDRI 201
G++ STY YWWIRQ ++RA+ E RT+RLP H+ E+L+ I+ A+ +L ++ G T++ +
Sbjct: 145 GYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLAQQLGRAATMNEL 204
Query: 202 AKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIAD--NRLENIPWHGVD 259
A L+++ K++R E SLD GD + D N P
Sbjct: 205 AAELDLTPKQIREYLEKSRLPLSLDLRV--------GDNQDTELVDLLEDTSNSPEQFAL 256
Query: 260 EWTLKDEVNKLINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVAL 318
+L+ ++ L+ L +++R+++ L +GLD + LT I R+ +SRERVRQ+ AL
Sbjct: 257 NSSLRSDLESLM-TDLTDQQRQVLALRFGLDDGQTLTLAKIGDRLNISRERVRQIEREAL 315
Query: 319 EKLK 322
KL+
Sbjct: 316 TKLR 319
>B8LLW6_PICSI (tr|B8LLW6) Putative uncharacterized protein OS=Picea sitchensis
PE=2 SV=1
Length = 592
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 109/322 (33%), Positives = 185/322 (57%), Gaps = 15/322 (4%)
Query: 22 SKGYVKGVV-------SEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIA 74
SKG++ + S +LL+ +E V+LS I+ + LD +++ KEK G EP+ Q A
Sbjct: 275 SKGHISDSIRLLRDWSSSRLLTASEEVELSRGIQDLIKLDRIRAKYKEKTGKEPTLAQWA 334
Query: 75 ASLKISRSELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRG 134
+ + + L+ + + +++ N+RLV+S+A+ Y N G + DL+Q G +GL+R
Sbjct: 335 EVIGVDQKTLKMRLEVGRDSFDKIINCNLRLVISVAKNYQNRGLSLQDLIQAGSMGLMRS 394
Query: 135 IEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTA-KFRLEERG 193
EKFD S+GFK STY YWWIRQ +++AL E SRT+RLP H+ E ++ IRTA + +E
Sbjct: 395 AEKFDYSRGFKFSTYAYWWIRQSITKALTEQSRTIRLPVHIVESMTRIRTAWRLLYQEHK 454
Query: 194 ITPTIDRIAKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENI 253
PT + +A+ +S ++R+ T SLDR ++ + +AD E+
Sbjct: 455 RDPTKEEVAEVAGISMTRLRHVTRCSRVPTSLDRCVGKDMD----EKFSEIVADTNSEST 510
Query: 254 PWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQ 312
V + K +++++++ TL RE++++RL YGLD + + ++ + LSRERVRQ
Sbjct: 511 E-TIVSKELFKKDLDRVLD-TLTAREKQVVRLRYGLDDGRMKSLHEVGENFSLSRERVRQ 568
Query: 313 VGLVALEKLKHAARKREMEAML 334
+ + A+ KL+ R + ++ L
Sbjct: 569 IEMKAMRKLRQNHRTQHLKHYL 590
>E3CLD6_STRDO (tr|E3CLD6) RNA polymerase sigma factor OS=Streptococcus downei
F0415 GN=rpoD PE=3 SV=1
Length = 338
Score = 174 bits (440), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 93/245 (37%), Positives = 157/245 (64%), Gaps = 10/245 (4%)
Query: 93 LARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYW 152
+A++RLA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGFK STY W
Sbjct: 99 MAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATW 158
Query: 153 WIRQGVSRALVENSRTLRLPTHLHERLS-LIRTAKFRLEERGITPTIDRIAKSLNMSQKK 211
WIRQ ++RA+ + +RT+R+P H+ E ++ L+R + L+E G PT ++IA+ ++M+ K
Sbjct: 159 WIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDK 218
Query: 212 VRNATEAISKVFSLDREAFPSLNGLPGDTH-HCYIADNRLENIPWHGVDEWTLKDEVNKL 270
VR + + SL+ G D+H +I D +EN P L++++N++
Sbjct: 219 VREILKIAQEPVSLETPI-----GEEDDSHLGDFIEDEVIEN-PVDYTTRIVLREQLNEV 272
Query: 271 INVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKHAARKRE 329
++ TL +RE ++RL +GLD + T ED+ K ++RER+RQ+ AL KL+H +R ++
Sbjct: 273 LD-TLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQ 331
Query: 330 MEAML 334
++ +
Sbjct: 332 LKDFM 336
>A9RTR4_PHYPA (tr|A9RTR4) Uncharacterized protein OS=Physcomitrella patens subsp.
patens GN=PHYPADRAFT_160930 PE=4 SV=1
Length = 591
Score = 174 bits (440), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 111/309 (35%), Positives = 182/309 (58%), Gaps = 12/309 (3%)
Query: 23 KGYVKGVVSEQLLSHAEVVKLSEKIKVG--LSLDEHKSRLKEKLGCEPSDDQIAASLKIS 80
+ Y++ + +LL+ +E V LS KI+ L L++ KS L+ ++G EPS + + ++ +
Sbjct: 277 RAYLRDIGKTKLLTASEEVALSRKIQARDLLVLEKVKSDLQREIGREPSIGEWSRAVGME 336
Query: 81 RSELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDS 140
++ + E +++++ SN+RLV+SI + Y G + DL+Q G +GL+RG EKFD
Sbjct: 337 QNAFELRVKEGRYSKDKMVNSNLRLVVSIVKNYQGRGMTLPDLIQEGSMGLIRGAEKFDP 396
Query: 141 SKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTA-KFRLEERGITPTID 199
KGFK STY +WWIRQ V+RA+ + SR +RLP HL+E +S I A K ++E G P +
Sbjct: 397 DKGFKFSTYAHWWIRQAVTRAIADQSRIIRLPIHLYEVISRINKAKKMLIQEHGRQPRDE 456
Query: 200 RIAKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHC-YIADNRLENIPWHGV 258
+A+ + MS +K++ ++ S+DR L G D IAD +E+ P +
Sbjct: 457 EVAELVGMSVEKLKFIVKSAKTPSSMDR-----LIGKEKDQSIGEMIADKDVES-PEDDL 510
Query: 259 DEWTLKDEVNKLINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVA 317
LK +V+ ++ TL RERE++RL +GLD + T E+I ++RER+RQ+ A
Sbjct: 511 IRQVLKQDVDGVL-CTLNPREREVLRLRFGLDDGQSRTLEEIGTLFKVTRERIRQIEAKA 569
Query: 318 LEKLKHAAR 326
+ KL+ +R
Sbjct: 570 MRKLRQPSR 578
>K9YIA7_CYASC (tr|K9YIA7) RNA polymerase, sigma 70 subunit, RpoD subfamily
OS=Cyanobacterium stanieri (strain ATCC 29140 / PCC
7202) GN=Cyast_0215 PE=4 SV=1
Length = 318
Score = 174 bits (440), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 108/300 (36%), Positives = 181/300 (60%), Gaps = 9/300 (3%)
Query: 25 YVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRSEL 84
Y+K + LL+ E + ++ I+ ++L++ K L +KL EP+ + A + KIS L
Sbjct: 14 YLKEIGRIPLLTQEEEIIYAKHIQELVALEKKKETLAKKLEHEPTLGEWAKAAKISEKNL 73
Query: 85 RAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGF 144
+ K + A+ R+ +N+RLV+SIA++Y ++ DL+Q G IG+ RG+EKFD +KG+
Sbjct: 74 QIKITQGEKAKRRMVEANLRLVVSIAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGY 133
Query: 145 KISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRL-EERGITPTIDRIAK 203
+ STY YWWIRQ ++RA+ E SR +RLP H+ E+L+ IR + +L EE+G TI +A+
Sbjct: 134 RFSTYAYWWIRQAITRAIAEKSRAIRLPLHITEKLNKIRQTQRKLSEEKGRPATIAELAE 193
Query: 204 SLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTL 263
+L +S ++VR + SLD + G DT + +++ ++ P D L
Sbjct: 194 ALELSTEQVREYLGKARQPLSLDLKV-----GDNNDTELGELLEDKGQS-PEDFTDYSCL 247
Query: 264 KDEVNKLINVTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKLK 322
+ ++ K+++ L ++++++IRL YGL D + LT I + +SRERVRQ+ AL KL+
Sbjct: 248 QFDLKKMMS-ELTQQQQDVIRLRYGLEDGKPLTLSKIGDILSISRERVRQIEREALTKLR 306
>M1WSP5_9NOST (tr|M1WSP5) RNA polymerase sigma factor OS=Richelia intracellularis
HH01 GN=RINTHH_14140 PE=3 SV=1
Length = 390
Score = 174 bits (440), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 108/304 (35%), Positives = 177/304 (58%), Gaps = 9/304 (2%)
Query: 25 YVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRSEL 84
Y++ + +LL E ++L+ KI L ++ + RL ++L EP + A ++KI +
Sbjct: 85 YLQEIGRIRLLRADEEIELARKIADLLEMERVRDRLYDQLAREPKYSEWAEAVKIPLPQF 144
Query: 85 RAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGF 144
R + A++++ SN+RLV+SIA++Y N G DL+Q G +GL+R EKFD KG+
Sbjct: 145 RYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGY 204
Query: 145 KISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLI-RTAKFRLEERGITPTIDRIAK 203
K STY WWIRQ ++RA+ + SRT+RLP HL+E +S I +T K +E G PT + IA
Sbjct: 205 KFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIAT 264
Query: 204 SLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTL 263
+ M+ +K+R ++ SL+ + GD +I + P V + L
Sbjct: 265 RMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD----FIESD--GETPEDQVSKGLL 318
Query: 264 KDEVNKLINVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLK 322
++++ K+++ +L RER+++RL YGLD + T E+I + ++RER+RQ+ AL KL+
Sbjct: 319 REDLEKVLD-SLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 377
Query: 323 HAAR 326
H R
Sbjct: 378 HPNR 381
>K8GTQ7_9CYAN (tr|K8GTQ7) RNA polymerase sigma factor OS=Oscillatoriales
cyanobacterium JSC-12 GN=OsccyDRAFT_1402 PE=3 SV=1
Length = 407
Score = 174 bits (440), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 111/332 (33%), Positives = 186/332 (56%), Gaps = 21/332 (6%)
Query: 6 AMQMRSLISPELLQNRSKGYVKGVVSEQ------------LLSHAEVVKLSEKIKVGLSL 53
AM + E+ +RS GY+K + + LL E V+L+ +I+ +
Sbjct: 69 AMSGDDALVDEIASSRSVGYIKTMSDDSVGAFFKEMARYPLLKPDEEVELANQIRYLNEI 128
Query: 54 DEHKSRLKEKLGCEPSDDQIAASLKISRSELRAKTIECTLARERLAMSNVRLVMSIAQRY 113
+E +S+L ++LG PS ++A ++ ++ +L + +A+ ++ SN+RLV+SIA+RY
Sbjct: 129 EELRSQLTQELGRCPSKAELADAVGLTERQLEHQLHRSRVAKRKMIRSNLRLVVSIAKRY 188
Query: 114 DNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPT 173
N G DL+Q G +GL R EKFD KG+K STY YWWIRQG++R + +SRT+RLP
Sbjct: 189 INRGVPFLDLIQEGALGLNRATEKFDPDKGYKFSTYAYWWIRQGITRTIANDSRTIRLPV 248
Query: 174 HLHERLSLIRTAKFRLEER-GITPTIDRIAKSLNMSQKKVRNATEAISKVFSLDREAFPS 232
H+ E+L+ ++ A+ L+ + PT +A++L ++ ++++N + + SL+
Sbjct: 249 HIVEKLNKLKGAQRDLKRKLNRNPTEAELAEALEVTPEQLQNLQQVHRRSLSLNYRV--- 305
Query: 233 LNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGL--D 290
G DT + ++ P + E L+ E+ ++ L ERE++II L YGL +
Sbjct: 306 --GKDEDTELVDLLEDAETRSPESQMSETMLRQEIWDVLGNVLTEREKDIISLRYGLSSN 363
Query: 291 KECLTWEDISKRIGLSRERVRQVGLVALEKLK 322
K C T E++ LSRERVRQ+ A+ KL+
Sbjct: 364 KPC-TLEEVGGLFNLSRERVRQIQSKAMRKLR 394
>M0TES6_MUSAM (tr|M0TES6) Uncharacterized protein OS=Musa acuminata subsp.
malaccensis PE=4 SV=1
Length = 548
Score = 174 bits (440), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 113/323 (34%), Positives = 184/323 (56%), Gaps = 18/323 (5%)
Query: 25 YVKGVVS-EQLLSHAEVVKLSEKIKVG---------LSLDEHKSRLKEKLGCEPSDDQIA 74
Y++G S +LL+ AE V+LSE I+ L L+ + L E+ GC+P+ Q A
Sbjct: 231 YLRGTTSTSRLLTAAEEVELSEGIQTYSKILFNGDLLKLERLQQDLTERNGCQPTFAQWA 290
Query: 75 ASLKISRSELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRG 134
A+ I + LR + T ++++ SN+RLV+SIA+ Y + G + DLVQ G GL++G
Sbjct: 291 AAAGIDQKVLRKRLNYGTFCKDKMITSNIRLVISIAKNYQHAGMNLQDLVQEGCRGLIKG 350
Query: 135 IEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRL-EERG 193
EKFD+SKGFK STY +WWI+Q V ++L E SRT+RLP H+ E +R AK +L E G
Sbjct: 351 AEKFDASKGFKFSTYAHWWIKQAVRKSLSEQSRTIRLPFHMVEATYRVREAKKQLYSENG 410
Query: 194 ITPTIDRIAKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENI 253
P + +A++ +S K+ SLD++ + P + IAD E
Sbjct: 411 RHPDHEEVAEASGLSMKRFAAVMLTPKAPRSLDQKIGINQTLKPSEV----IADPDAETS 466
Query: 254 PWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQ 312
+ ++ +++++NK+++ TL RE+ ++R +GL D T ++I + +G+SRER+RQ
Sbjct: 467 EDILIKQF-MREDLNKVLD-TLNPREKRVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQ 524
Query: 313 VGLVALEKLKHAARKREMEAMLL 335
+ A KLK R + ++ ++
Sbjct: 525 IEFCAFRKLKSKKRTKNLQQYII 547
>E8R2V4_ISOPI (tr|E8R2V4) RNA polymerase sigma factor OS=Isosphaera pallida
(strain ATCC 43644 / DSM 9630 / IS1B) GN=Isop_3036 PE=3
SV=1
Length = 592
Score = 173 bits (439), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 106/284 (37%), Positives = 164/284 (57%), Gaps = 8/284 (2%)
Query: 53 LDEHKSRLKEKLGCEPSDDQIAASLKISRSELRAKTIECTLARERLAMSNVRLVMSIAQR 112
LDEH + KE + A L E+ + E A+ +L+ N+RLV+SIA++
Sbjct: 310 LDEHANLEKELRDLMLMTLETPAGLARRVREMNERFKEYEKAKRKLSGGNLRLVVSIAKK 369
Query: 113 YDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLP 172
Y N G DL+Q G GL+R ++K++ +GFK STY WWIRQ ++RA+ + +RT+R+P
Sbjct: 370 YRNRGLSFLDLIQEGNTGLMRAVDKYEWRRGFKFSTYATWWIRQAITRAIADQARTIRIP 429
Query: 173 THLHERLSLIRTA-KFRLEERGITPTIDRIAKSLNMSQKKVRNATEAISKVFSLDREAFP 231
H+ E +S +R K L+E+G PTI+ A++ N+S ++ R + SLDR
Sbjct: 430 VHMIETMSKLRNVNKKLLQEKGREPTIEETARAANISIEETRRVMKISRHPISLDRPVGE 489
Query: 232 SLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGL-D 290
S + GD +I D EN P + + LKD++++++ TL REREII+L YGL D
Sbjct: 490 SEDSYFGD----FIEDTTAEN-PINSATQEMLKDKIDQVLK-TLTYREREIIKLRYGLGD 543
Query: 291 KECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKREMEAML 334
T E++ + ++RERVRQ+ A+ KL+H R R++E L
Sbjct: 544 GYTYTLEEVGRIFKVTRERVRQIEAKAVRKLQHPVRSRQLEGFL 587
>G6FNJ2_9CYAN (tr|G6FNJ2) RNA polymerase sigma factor OS=Fischerella sp. JSC-11
GN=FJSC11DRAFT_0439 PE=3 SV=1
Length = 389
Score = 173 bits (439), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 103/308 (33%), Positives = 179/308 (58%), Gaps = 9/308 (2%)
Query: 24 GYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRSE 83
+ K + LL E V+L+ +++ ++E ++ L+++LG +P+ IAA L+I+ +
Sbjct: 81 AFFKEMARYPLLKPDEEVELARRVRFLEEVNEIQAALRQELGHQPTKASIAAHLQITEKQ 140
Query: 84 LRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKG 143
L + + +A+ ++ SN+RLV+SIA+RY N G DL+Q G +GL R EKFD KG
Sbjct: 141 LENRLYQGRVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKG 200
Query: 144 FKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRLEER-GITPTIDRIA 202
+K STY YWWIRQ ++RA+ ++RT+RLP H+ E+L+ ++ A+ L++R G P +A
Sbjct: 201 YKFSTYAYWWIRQAITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQRLGRNPNEIEMA 260
Query: 203 KSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWT 262
++L + +++R + + SL+ G DT + ++ P ++E
Sbjct: 261 EALEIPPQQLRQLQQLRRQALSLNHRV-----GKEEDTELMDLLEDEDNQSPEAKMNESM 315
Query: 263 LKDEVNKLINVTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKL 321
++ E+ +++ L RE+++I L YGL E T E++ LSRERVRQ+ A+ KL
Sbjct: 316 MRQEIWEVLGDVLTPREKDVISLRYGLTTSEPCTLEEVGNMFNLSRERVRQIQSKAMRKL 375
Query: 322 K--HAARK 327
+ H A++
Sbjct: 376 RRPHIAKR 383
>K9TYL7_9CYAN (tr|K9TYL7) RNA polymerase sigma factor OS=Chroococcidiopsis
thermalis PCC 7203 GN=Chro_1963 PE=3 SV=1
Length = 392
Score = 173 bits (439), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 108/304 (35%), Positives = 177/304 (58%), Gaps = 9/304 (2%)
Query: 25 YVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRSEL 84
Y++ + +LL E ++L+ KI L L+ + +L ++L EP D + A ++K +
Sbjct: 87 YLQEIGRIRLLRADEEIELARKIADLLELERIREKLSDRLDREPQDSEWAEAVKQNLPAF 146
Query: 85 RAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGF 144
R + A++++ SN+RLV+SIA++Y N G DL+Q G +GL+R EKFD KG+
Sbjct: 147 RYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGY 206
Query: 145 KISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLI-RTAKFRLEERGITPTIDRIAK 203
K STY WWIRQ ++RA+ + SRT+RLP HL+E +S I +T K +E G PT + IA
Sbjct: 207 KFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIAT 266
Query: 204 SLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTL 263
+ M+ +K+R ++ SL+ + GD +I + P V + L
Sbjct: 267 RMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD----FIESD--GETPEDQVSKNLL 320
Query: 264 KDEVNKLINVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLK 322
++++ K+++ +L RER+++RL YGLD + T E+I + ++RER+RQ+ AL KL+
Sbjct: 321 REDLEKVLD-SLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 379
Query: 323 HAAR 326
H R
Sbjct: 380 HPNR 383
>Q05YJ7_9SYNE (tr|Q05YJ7) RNA polymerase sigma factor OS=Synechococcus sp. BL107
GN=BL107_10222 PE=3 SV=1
Length = 451
Score = 173 bits (439), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 110/304 (36%), Positives = 178/304 (58%), Gaps = 9/304 (2%)
Query: 25 YVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRSEL 84
Y++ + +LL E ++L+ KI L L+E ++ + G EP + AA +++
Sbjct: 146 YLQEIGRIRLLRPDEEIELARKIADLLYLEELAAQFESDNGREPDKKEWAALVEMPLIRF 205
Query: 85 RAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGF 144
R + + A+E++ SN+RLV+SIA++Y N G DL+Q G +GL+R EKFD KG+
Sbjct: 206 RRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGY 265
Query: 145 KISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLI-RTAKFRLEERGITPTIDRIAK 203
K STY WWIRQ ++RA+ + SRT+RLP HL+E +S I +T K +E G PT + IA+
Sbjct: 266 KFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAE 325
Query: 204 SLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTL 263
S+ M+ +K+R ++ SL+ + G D+ + +EN P V + L
Sbjct: 326 SMEMTIEKLRFIAKSAQLPISLE-----TPIGKEEDSRLGDFIEADIEN-PEQDVAKNLL 379
Query: 264 KDEVNKLINVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLK 322
++++ ++ TL RER+++RL YGLD + T E+I + ++RER+RQ+ AL KL+
Sbjct: 380 REDLEGVL-ATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLR 438
Query: 323 HAAR 326
H R
Sbjct: 439 HPNR 442
>K9QTZ2_NOSS7 (tr|K9QTZ2) RNA polymerase sigma factor OS=Nostoc sp. (strain ATCC
29411 / PCC 7524) GN=Nos7524_2732 PE=3 SV=1
Length = 390
Score = 173 bits (439), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 108/304 (35%), Positives = 177/304 (58%), Gaps = 9/304 (2%)
Query: 25 YVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRSEL 84
Y++ + +LL E ++L+ KI L L+ + RL E+L +P D + A ++++
Sbjct: 85 YLQEIGRIRLLRADEEIELARKIADLLELERIRERLSEQLERDPHDSEWAEAVQLPLPAF 144
Query: 85 RAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGF 144
R + A++++ SN+RLV+SIA++Y N G DL+Q G +GL+R EKFD KG+
Sbjct: 145 RYRLHLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGY 204
Query: 145 KISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLI-RTAKFRLEERGITPTIDRIAK 203
K STY WWIRQ ++RA+ + SRT+RLP HL+E +S I +T K +E G PT + IA
Sbjct: 205 KFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIAT 264
Query: 204 SLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTL 263
+ M+ +K+R ++ SL+ + GD +I + P V + L
Sbjct: 265 RMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD----FIESD--GETPEDQVSKNLL 318
Query: 264 KDEVNKLINVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLK 322
++++ K+++ +L RER+++RL YGLD + T E+I + ++RER+RQ+ AL KL+
Sbjct: 319 REDLEKVLD-SLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 377
Query: 323 HAAR 326
H R
Sbjct: 378 HPNR 381
>E0UE67_CYAP2 (tr|E0UE67) RNA polymerase sigma factor OS=Cyanothece sp. (strain
PCC 7822) GN=Cyan7822_2213 PE=3 SV=1
Length = 418
Score = 173 bits (439), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 103/308 (33%), Positives = 175/308 (56%), Gaps = 31/308 (10%)
Query: 47 IKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRSELRAKTIEC--------------- 91
IK +SL E + +L +LG PS +++A + +I+ EL+ E
Sbjct: 110 IKNFVSLIEKRDQLTSQLGHRPSLERLADAAEITVFELKKTLYEGKRHWAELANLEVQEL 169
Query: 92 -------TLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGF 144
A+E++ +N+RLV+S+A+RY N G E+ DL+Q G +GL R ++KFD +KG+
Sbjct: 170 ERVQKAGIYAKEQMIKANLRLVVSVAKRYQNRGLELLDLIQEGTLGLERAVDKFDPTKGY 229
Query: 145 KISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRLEE-RGITPTIDRIAK 203
+ STY YWWIRQG++RA+ SR +RLP H+ E+L+ I+ A+ ++ + +G TP+I+ +++
Sbjct: 230 RFSTYAYWWIRQGITRAIATQSRIIRLPVHITEKLNKIKKAQRKIAQLKGATPSIEELSQ 289
Query: 204 SLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTL 263
L MS ++R + + SL+ + G DT + + E P + L
Sbjct: 290 ELEMSPPQIREVLMRVPRSVSLEIKV-----GKEKDTELIDLLET-TEASPEDNIANEAL 343
Query: 264 KDEVNKLINVTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKLK 322
+ +++ L+ L RERE+I+L YG D + + DI + + LSRERVRQ+ A++KL+
Sbjct: 344 RQDLHNLL-ADLTTREREVIQLRYGFKDGKSYSLADIGRTLQLSRERVRQIEAKAIQKLR 402
Query: 323 HAARKREM 330
R+ ++
Sbjct: 403 QPKRRNQI 410
>G5JTR2_STRCG (tr|G5JTR2) RNA polymerase sigma factor OS=Streptococcus criceti
HS-6 GN=rpoD PE=3 SV=1
Length = 369
Score = 173 bits (439), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 93/245 (37%), Positives = 156/245 (63%), Gaps = 10/245 (4%)
Query: 93 LARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYW 152
+A++RLA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGFK STY W
Sbjct: 130 MAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATW 189
Query: 153 WIRQGVSRALVENSRTLRLPTHLHERLS-LIRTAKFRLEERGITPTIDRIAKSLNMSQKK 211
WIRQ ++RA+ + +RT+R+P H+ E ++ L+R + L+E G PT ++IA+ ++M+ K
Sbjct: 190 WIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDK 249
Query: 212 VRNATEAISKVFSLDREAFPSLNGLPGDTH-HCYIADNRLENIPWHGVDEWTLKDEVNKL 270
VR + + SL+ G D+H +I D +EN P L++++N +
Sbjct: 250 VREILKIAQEPVSLETPI-----GEEDDSHLGDFIEDEVIEN-PVDYTTRIVLREQLNDV 303
Query: 271 INVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKHAARKRE 329
++ TL +RE ++RL +GLD + T ED+ K ++RER+RQ+ AL KL+H +R ++
Sbjct: 304 LD-TLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQ 362
Query: 330 MEAML 334
++ +
Sbjct: 363 LKDFM 367
>Q7U5C4_SYNPX (tr|Q7U5C4) RNA polymerase sigma factor OS=Synechococcus sp.
(strain WH8102) GN=sigA PE=3 SV=1
Length = 471
Score = 173 bits (439), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 110/304 (36%), Positives = 178/304 (58%), Gaps = 9/304 (2%)
Query: 25 YVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRSEL 84
Y++ + +LL E ++L+ KI L L+E ++ + G EP + AA +++
Sbjct: 166 YLQEIGRIRLLRPDEEIELARKIADLLHLEELAAQFESDNGREPDKKEWAALVEMPLIRF 225
Query: 85 RAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGF 144
R + + A+E++ SN+RLV+SIA++Y N G DL+Q G +GL+R EKFD KG+
Sbjct: 226 RRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGY 285
Query: 145 KISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLI-RTAKFRLEERGITPTIDRIAK 203
K STY WWIRQ ++RA+ + SRT+RLP HL+E +S I +T K +E G PT + IA+
Sbjct: 286 KFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAE 345
Query: 204 SLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTL 263
S+ M+ +K+R ++ SL+ + G D+ + +EN P V + L
Sbjct: 346 SMEMTIEKLRFIAKSAQLPISLE-----TPIGKEEDSRLGDFIEADIEN-PEQDVAKNLL 399
Query: 264 KDEVNKLINVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLK 322
++++ ++ TL RER+++RL YGLD + T E+I + ++RER+RQ+ AL KL+
Sbjct: 400 REDLEGVL-ATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLR 458
Query: 323 HAAR 326
H R
Sbjct: 459 HPNR 462
>Q3ANG0_SYNSC (tr|Q3ANG0) RNA polymerase sigma factor OS=Synechococcus sp.
(strain CC9605) GN=Syncc9605_0093 PE=3 SV=1
Length = 335
Score = 173 bits (439), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 104/309 (33%), Positives = 179/309 (57%), Gaps = 22/309 (7%)
Query: 23 KGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRS 82
+ Y++ + LL+H + + L +++ + L+ +S LK K G +PS DQ+A + +S
Sbjct: 29 RSYLRDIGRVPLLTHEQEITLGRQVQELMDLESLESELKSKAGEKPSRDQLAKASGLSSI 88
Query: 83 ELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSK 142
+L+ K A+ER+ +N+RLV+S+A++Y E+ DL+Q G IGL+RG+EKFD ++
Sbjct: 89 QLKRKLQHGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTR 148
Query: 143 GFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRL-EERGITPTIDRI 201
G+K STY YWWIRQG++RA+ E SRT+RLP H+ E L+ ++ + L +E G TPT+ +
Sbjct: 149 GYKFSTYAYWWIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPTVTEL 208
Query: 202 AKSLNMSQKKVRNATEAISKVFSL-----DREAFPSLNGLPGDTHHCYIADNRLENIPWH 256
A+ + + + V++ + SL D + L L GD ++P
Sbjct: 209 AEFVELPEDDVKDLMCRARQPVSLEMKVGDGDDTELLELLSGDG-----------DLPSD 257
Query: 257 GVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDKE-CLTWEDISKRIGLSRERVRQV-- 313
V+E LK ++ L+ L + +++R+ YG+D E ++ I + +G+SR+RVR +
Sbjct: 258 QVEEDCLKGDLRSLLG-QLPHLQEQVLRMRYGMDGEDPMSLTGIGRILGMSRDRVRNLER 316
Query: 314 -GLVALEKL 321
GL L ++
Sbjct: 317 DGLAGLRRV 325
>K9PJQ4_9CYAN (tr|K9PJQ4) RNA polymerase sigma factor OS=Calothrix sp. PCC 7507
GN=Cal7507_2774 PE=3 SV=1
Length = 390
Score = 173 bits (439), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 107/304 (35%), Positives = 177/304 (58%), Gaps = 9/304 (2%)
Query: 25 YVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRSEL 84
Y++ + +LL E ++L+ KI L L+ + +L E+L +P D + A ++++
Sbjct: 85 YLQEIGRIRLLRADEEIELARKIADLLELERVREKLSEQLDRDPKDSEWAEAVQLPLPAF 144
Query: 85 RAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGF 144
R + A++++ SN+RLV+SIA++Y N G DL+Q G +GL+R EKFD KG+
Sbjct: 145 RYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGY 204
Query: 145 KISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLI-RTAKFRLEERGITPTIDRIAK 203
K STY WWIRQ ++RA+ + SRT+RLP HL+E +S I +T K +E G PT + IA
Sbjct: 205 KFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIAT 264
Query: 204 SLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTL 263
+ M+ +K+R ++ SL+ + GD +I + P V + L
Sbjct: 265 RMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD----FIESD--GETPEDQVSKNLL 318
Query: 264 KDEVNKLINVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLK 322
++++ K+++ +L RER+++RL YGLD + T E+I + ++RER+RQ+ AL KL+
Sbjct: 319 REDLEKVLD-SLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 377
Query: 323 HAAR 326
H R
Sbjct: 378 HPNR 381
>Q3AWQ6_SYNS9 (tr|Q3AWQ6) RNA polymerase sigma factor OS=Synechococcus sp.
(strain CC9902) GN=Syncc9902_1678 PE=3 SV=1
Length = 451
Score = 173 bits (438), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 110/304 (36%), Positives = 178/304 (58%), Gaps = 9/304 (2%)
Query: 25 YVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRSEL 84
Y++ + +LL E ++L+ KI L L+E ++ + G EP + AA +++
Sbjct: 146 YLQEIGRIRLLRPDEEIELARKIADLLYLEELAAQFESDNGREPDKKEWAALVEMPLIRF 205
Query: 85 RAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGF 144
R + + A+E++ SN+RLV+SIA++Y N G DL+Q G +GL+R EKFD KG+
Sbjct: 206 RRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGY 265
Query: 145 KISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLI-RTAKFRLEERGITPTIDRIAK 203
K STY WWIRQ ++RA+ + SRT+RLP HL+E +S I +T K +E G PT + IA+
Sbjct: 266 KFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAE 325
Query: 204 SLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTL 263
S+ M+ +K+R ++ SL+ + G D+ + +EN P V + L
Sbjct: 326 SMEMTIEKLRFIAKSAQLPISLE-----TPIGKEEDSRLGDFIEADIEN-PEQDVAKNLL 379
Query: 264 KDEVNKLINVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLK 322
++++ ++ TL RER+++RL YGLD + T E+I + ++RER+RQ+ AL KL+
Sbjct: 380 REDLEGVL-ATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLR 438
Query: 323 HAAR 326
H R
Sbjct: 439 HPNR 442
>F5UJI7_9CYAN (tr|F5UJI7) RNA polymerase sigma factor OS=Microcoleus vaginatus
FGP-2 GN=MicvaDRAFT_0962 PE=3 SV=1
Length = 357
Score = 173 bits (438), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 100/292 (34%), Positives = 173/292 (59%), Gaps = 9/292 (3%)
Query: 34 LLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRSELRAKTIECTL 93
LL+ E V+L+ +++ ++LDE + RL+++L P+ ++AA+L IS ++L+ +C
Sbjct: 59 LLTATEEVELARRVQELVALDEVEQRLQQELDRVPTKAELAAALGISETQLQQLRHQCQS 118
Query: 94 ARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 153
A+ ++ SN+RLV+SIA+RY N G DL+Q G +GL R EKFD KG+K STY YWW
Sbjct: 119 AKRKMISSNLRLVVSIAKRYLNRGVPFLDLIQEGALGLNRAAEKFDPEKGYKFSTYAYWW 178
Query: 154 IRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRLEERGI--TPTIDRIAKSLNMSQKK 211
IRQG++R + RT+RLP H+ E+L+ ++ +R R + PT +A+ + ++ ++
Sbjct: 179 IRQGITRTIANQGRTIRLPVHIVEQLNKLKKV-YRDLRRSLQRNPTETELAREMQVTCEQ 237
Query: 212 VRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNKLI 271
+R + + SL+ G + + ++ P ++E ++ ++ +++
Sbjct: 238 LRYLQQVRRQSLSLNHRI-----GSEESSELLDVLEDNATQSPEAQMNEMMMRQDILEVL 292
Query: 272 NVTLVEREREIIRLYYG-LDKECLTWEDISKRIGLSRERVRQVGLVALEKLK 322
+ L ERE+EI+ + YG L E T E++S LSRERVRQ+ A+ KL+
Sbjct: 293 DSILTEREKEIVAMRYGLLTGEPYTLEEVSSLFNLSRERVRQIQNKAMRKLR 344
>H1WGX8_9CYAN (tr|H1WGX8) Group 2 RNA polymerase sigma factor SigD (RpoD family)
OS=Arthrospira sp. PCC 8005 GN=sigD PE=4 SV=1
Length = 331
Score = 173 bits (438), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 99/304 (32%), Positives = 177/304 (58%), Gaps = 13/304 (4%)
Query: 23 KGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRS 82
+ Y++ + LL+H + + ++++ L E ++ L ++LG EP++ Q A + +S +
Sbjct: 25 RAYLREIGRVPLLTHEQEIVYGKQVQQATLLQEKRNELAKQLGYEPTEAQWAELVNLSVA 84
Query: 83 ELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSK 142
+L+ + LA+ ++ +N+RLV+S+A++Y ++ DL+Q G IG+ RG+EKFD +K
Sbjct: 85 QLQHILHQGQLAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTK 144
Query: 143 GFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRLEER-GITPTIDRI 201
G++ STY YWWIRQ ++RA+ E RT+RLP H+ E+L+ I+ A+ +L ++ G T++ +
Sbjct: 145 GYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLAQQLGRAATMNEL 204
Query: 202 AKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIAD--NRLENIPWHGVD 259
A L+++ K++R E SLD GD + D N P
Sbjct: 205 AAELDLTPKQIREYLEKSRLPLSLDLRV--------GDNQDTELVDLLEDTSNSPDEFAL 256
Query: 260 EWTLKDEVNKLINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVAL 318
+L+ ++ L+ L +++R+++ L +GLD + LT I R+ +SRERVRQ+ AL
Sbjct: 257 NSSLRSDLESLM-TDLTDQQRQVLALRFGLDDGQTLTLAKIGDRLNISRERVRQIEREAL 315
Query: 319 EKLK 322
KL+
Sbjct: 316 TKLR 319
>B9SDA3_RICCO (tr|B9SDA3) RNA polymerase sigma factor rpoD1, putative OS=Ricinus
communis GN=RCOM_1515490 PE=4 SV=1
Length = 569
Score = 173 bits (438), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 109/314 (34%), Positives = 185/314 (58%), Gaps = 9/314 (2%)
Query: 25 YVKGVVS-EQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRSE 83
Y++G S +LL+ +E ++LS I+ L L+ + L E+ G +P+ Q AA+ + +
Sbjct: 261 YLRGTTSTSRLLTASEELELSAAIQDLLKLERLQEELAERYGGQPTFAQWAAAAGVDQRT 320
Query: 84 LRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKG 143
LR + T+ ++++ SN+RLV+SIA+ Y G + DLVQ G GL+RG EKFD+SKG
Sbjct: 321 LRKRINHGTICKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 380
Query: 144 FKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRL-EERGITPTIDRIA 202
FK STY +WWI+Q V ++L + SRT+RLP H+ E ++ A+ +L E G P + +A
Sbjct: 381 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEVA 440
Query: 203 KSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWT 262
++ +S K++ SLD++ +++ P + IAD E + ++
Sbjct: 441 EAAGLSMKRLSAVLLTPKAPRSLDQKIGMNMDLKPSEV----IADPEAETAEELLMKQF- 495
Query: 263 LKDEVNKLINVTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKL 321
+K ++ K++N TL RE +++R +GL D T ++I + +G+SRER+RQ+ A KL
Sbjct: 496 MKQDLEKVLN-TLNPRETQVVRWRFGLEDGRMKTLQEIGEIMGVSRERIRQIESSAFRKL 554
Query: 322 KHAARKREMEAMLL 335
K+ R ++++ LL
Sbjct: 555 KNKKRTKQLKQYLL 568
>K9V2E9_9CYAN (tr|K9V2E9) RNA polymerase sigma factor OS=Calothrix sp. PCC 6303
GN=Cal6303_3070 PE=3 SV=1
Length = 389
Score = 173 bits (438), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 106/304 (34%), Positives = 178/304 (58%), Gaps = 9/304 (2%)
Query: 25 YVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRSEL 84
Y++ + +LL E ++L+ KI L L+ + +L ++L +P D + A ++++ +
Sbjct: 84 YLQEIGRIRLLRADEEIELARKIADLLELERIREKLSQQLDRDPKDSEWAEAVQVPLPQF 143
Query: 85 RAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGF 144
R + A++++ SN+RLV+SIA++Y N G DL+Q G +GL+R EKFD KG+
Sbjct: 144 RYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGY 203
Query: 145 KISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLI-RTAKFRLEERGITPTIDRIAK 203
K STY WWIRQ ++RA+ + SRT+RLP HL+E +S I +T K +E G PT + IA
Sbjct: 204 KFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIAT 263
Query: 204 SLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTL 263
+ M+ +K+R ++ SL+ + GD +I + P V + L
Sbjct: 264 RMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD----FIESD--GETPEDQVSKNLL 317
Query: 264 KDEVNKLINVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLK 322
++++ K+++ +L RER+++RL YGLD + T E+I + ++RER+RQ+ AL KL+
Sbjct: 318 REDLEKVLD-SLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 376
Query: 323 HAAR 326
H R
Sbjct: 377 HPNR 380
>K9W354_9CYAN (tr|K9W354) RNA polymerase sigma factor OS=Crinalium epipsammum PCC
9333 GN=Cri9333_3816 PE=3 SV=1
Length = 383
Score = 173 bits (438), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 110/305 (36%), Positives = 177/305 (58%), Gaps = 11/305 (3%)
Query: 25 YVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRSEL 84
Y++ + +LL E ++L+ KI L L+ +LK +L EP D + A ++++ +
Sbjct: 78 YLQEIGRIRLLRADEEIELARKIAELLQLERVYEQLKAQLDREPKDSEWALAVEMPLPQF 137
Query: 85 RAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGF 144
R + A++++ SN+RLV+SIA++Y N G DL+Q G +GL+R EKFD KG+
Sbjct: 138 RHRLYLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGY 197
Query: 145 KISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLI-RTAKFRLEERGITPTIDRIAK 203
K STY WWIRQ ++RA+ + SRT+RLP HL+E +S I +T K +E G PT + IA
Sbjct: 198 KFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIAT 257
Query: 204 SLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYI-ADNRLENIPWHGVDEWT 262
+ M+ +K+R ++ SL+ + GD +I AD P V +
Sbjct: 258 RMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD----FIEADG---ETPEDEVSKNL 310
Query: 263 LKDEVNKLINVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKL 321
L++++ +++ TL RER+++RL YGLD + T E+I + ++RER+RQ+ AL KL
Sbjct: 311 LREDLESVLD-TLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKL 369
Query: 322 KHAAR 326
+H R
Sbjct: 370 RHPNR 374
>K9TEU2_9CYAN (tr|K9TEU2) RNA polymerase sigma factor, cyanobacterial RpoD-like
family OS=Oscillatoria acuminata PCC 6304
GN=Oscil6304_1212 PE=4 SV=1
Length = 318
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 108/313 (34%), Positives = 179/313 (57%), Gaps = 17/313 (5%)
Query: 23 KGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRS 82
+ Y++ + LL+H + + L ++++ L E K L E+ G EP+D + + + +S
Sbjct: 12 RTYLREIGRVPLLTHEQEIVLGKQVQHLSLLHEMKETLTEQFGHEPTDVEWSQAAGLSLV 71
Query: 83 ELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSK 142
EL+ + A+ ++ +N+RLV+S+A++Y ++ DL+Q G IG+ RG+EKFD +K
Sbjct: 72 ELQQAIEQGETAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTK 131
Query: 143 GFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRLEER-GITPTIDRI 201
G++ STY YWWIRQ ++RA+ E RT+RLP H+ E+L+ I+ A L ++ G T TI +
Sbjct: 132 GYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKASRELSQQLGRTATIGEL 191
Query: 202 AKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENI---PWHGV 258
A L +S K++R E SLD GD H +++ LE+ P
Sbjct: 192 AVELELSPKQIREYMERARHPLSLDLRV--------GDNHDTELSE-LLEDTGPSPEDFA 242
Query: 259 DEWTLKDEVNKLINVTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVA 317
++ ++ KL++ L ++RE+I L +GL D + +T I R+ +SRERVRQ+ A
Sbjct: 243 THSAMRADLEKLMS-ELTTQQREVIALRFGLEDGQAMTLSKIGDRLNISRERVRQIEREA 301
Query: 318 LEKLKHAARKREM 330
L KL+ RK +M
Sbjct: 302 LTKLR--KRKADM 312
>L8LPU5_9CHRO (tr|L8LPU5) RNA polymerase sigma factor OS=Gloeocapsa sp. PCC 73106
GN=GLO73106DRAFT_00034750 PE=3 SV=1
Length = 376
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 110/305 (36%), Positives = 179/305 (58%), Gaps = 11/305 (3%)
Query: 25 YVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRSEL 84
Y++ + +LL E ++L+ KI L L++ + +L ++L P+D + AAS+++
Sbjct: 71 YLQEIGRIRLLRAEEEIELARKIADLLELEQKREKLWQELKRIPNDREWAASVEMELPAF 130
Query: 85 RAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGF 144
R + A+E++ SN+RLV+SIA++Y N G DL+Q G +GL+R EKFD KG+
Sbjct: 131 RRRLYLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGY 190
Query: 145 KISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLI-RTAKFRLEERGITPTIDRIAK 203
K STY WWIRQ ++RA+ + SRT+RLP HL+E +S I +T K +E G PT + IA
Sbjct: 191 KFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMGRKPTEEEIAT 250
Query: 204 SLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYI-ADNRLENIPWHGVDEWT 262
+ M+ +K+R ++ SL+ + GD +I AD P V +
Sbjct: 251 HMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD----FIEADG---ETPEDDVSKNL 303
Query: 263 LKDEVNKLINVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKL 321
L++++ +++ +L RER+++RL YGLD + T E+I + ++RER+RQ+ AL KL
Sbjct: 304 LREDLEHVLD-SLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKL 362
Query: 322 KHAAR 326
+H R
Sbjct: 363 RHPNR 367
>R5UVK4_9FIRM (tr|R5UVK4) RNA polymerase sigma factor OS=Roseburia sp. CAG:18
GN=BN518_01032 PE=4 SV=1
Length = 419
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 109/313 (34%), Positives = 184/313 (58%), Gaps = 11/313 (3%)
Query: 25 YVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRSEL 84
Y+K + LLS E ++L++K++ G E LKE+L E D+Q ++ L
Sbjct: 114 YLKEIGKVPLLSADEEIELAQKMEAGSVAVEKIPLLKERL-AETGDEQEKEEIQAEIKAL 172
Query: 85 RAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGF 144
+ + A++RLA +N+RLV+SIA+RY G DL+Q G +GL++ +EKFD KG+
Sbjct: 173 QLDVDRGSDAKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYRKGY 232
Query: 145 KISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLS-LIRTAKFRLEERGITPTIDRIAK 203
K STY WWIRQ ++RA+ + +RT+R+P H+ E ++ LIR ++ L+E G PT + IA+
Sbjct: 233 KFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAE 292
Query: 204 SLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTH-HCYIADNRLENIPWHGVDEWT 262
+ M ++VR + + SL+ + G D+H +I D+ + +P
Sbjct: 293 EMKMPVERVREILKISQEPVSLE-----TPIGEEEDSHLGDFIKDDNV-PVPADAATFTL 346
Query: 263 LKDEVNKLINVTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKL 321
LK+++ +++ TL ERE++++ L +GL D T E++ K ++RER+RQ+ AL KL
Sbjct: 347 LKEQLEEVLG-TLTEREQKVLTLRFGLEDGRARTLEEVGKEFNVTRERIRQIEAKALRKL 405
Query: 322 KHAARKREMEAML 334
+H +R R+++ L
Sbjct: 406 RHPSRSRKLKDYL 418
>K9QHM1_9NOSO (tr|K9QHM1) RNA polymerase, sigma 70 subunit, RpoD subfamily
OS=Nostoc sp. PCC 7107 GN=Nos7107_4031 PE=4 SV=1
Length = 332
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 101/307 (32%), Positives = 181/307 (58%), Gaps = 15/307 (4%)
Query: 23 KGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRS 82
+ Y++ + LL+H E ++ ++++ +L E + L +LG EP+ ++ A K+ +
Sbjct: 26 RTYLREIGRVPLLTHEEEIRYGKQVQRSTALQEVRESLASQLGREPTLEEWAKESKLDIA 85
Query: 83 ELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSK 142
+L + +A+ R+ +N+RLV+S+A++Y ++ DL+Q G IG+ RG+EKFD +K
Sbjct: 86 DLNDAIADGEIAKRRMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTK 145
Query: 143 GFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRLEER-GITPTIDRI 201
G++ STY YWWIRQ ++RA+ E +RT+RLP H+ E+L+ I+ A+ +L ++ G P++ +
Sbjct: 146 GYRFSTYAYWWIRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRQLSQKLGRAPSVGEL 205
Query: 202 AKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENI---PWHGV 258
A L+++ K+VR E SLD GD + + + LE+ P V
Sbjct: 206 ATELDLTPKQVREYLEKARLPLSLDLRL--------GDNYDTELGE-MLEDPGASPEEFV 256
Query: 259 DEWTLKDEVNKLINVTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVA 317
+ +L ++ +++ L ++RE+I L +GL D + LT I + + +SRERVRQ+ A
Sbjct: 257 MQTSLSSDLERVME-ELTPQQREVITLRFGLIDGQALTLARIGEILNISRERVRQIEREA 315
Query: 318 LEKLKHA 324
L KL+ +
Sbjct: 316 LNKLRKS 322
>B4W0Y8_9CYAN (tr|B4W0Y8) RNA polymerase sigma factor OS=Coleofasciculus
chthonoplastes PCC 7420 GN=MC7420_8305 PE=3 SV=1
Length = 380
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 110/305 (36%), Positives = 176/305 (57%), Gaps = 11/305 (3%)
Query: 25 YVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRSEL 84
Y++ + +LL E ++L+ KI L L+ + RL ++L EP + + A +++
Sbjct: 75 YLQEIGRIRLLRADEEIELARKIADLLELERIRDRLYDQLEREPKEGEWAKEVEMELPAF 134
Query: 85 RAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGF 144
R + A+E++ SN+RLV+SIA++Y N G DL+Q G +GL+R EKFD KG+
Sbjct: 135 RQRLFLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGY 194
Query: 145 KISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLI-RTAKFRLEERGITPTIDRIAK 203
K STY WWIRQ ++RA+ + SRT+RLP HL+E +S I +T K +E G PT + IA
Sbjct: 195 KFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQELGRKPTEEEIAD 254
Query: 204 SLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYI-ADNRLENIPWHGVDEWT 262
+ M+ +K+R ++ SL+ + GD +I AD P V +
Sbjct: 255 RMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD----FIEADG---ETPEDQVSKNL 307
Query: 263 LKDEVNKLINVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKL 321
L++++ +++ TL RER+++RL YGLD + T E+I + ++RER+RQ+ AL KL
Sbjct: 308 LREDLESVLD-TLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKL 366
Query: 322 KHAAR 326
+H R
Sbjct: 367 RHPNR 371
>A0ZJC3_NODSP (tr|A0ZJC3) RNA polymerase sigma factor OS=Nodularia spumigena
CCY9414 GN=N9414_22328 PE=3 SV=1
Length = 391
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 109/304 (35%), Positives = 177/304 (58%), Gaps = 9/304 (2%)
Query: 25 YVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRSEL 84
Y++ + +LL E ++L+ KI L L+ + RL+E+L EP + A +++I
Sbjct: 86 YLQEIGRIRLLRADEEIELARKIADLLELERVRDRLQEQLEREPEYREWAEAVQIPLPAF 145
Query: 85 RAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGF 144
R + A++++ SN+RLV+SIA++Y N G DL+Q G +GL+R EKFD KG+
Sbjct: 146 RYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGY 205
Query: 145 KISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLI-RTAKFRLEERGITPTIDRIAK 203
K STY WWIRQ ++RA+ + SRT+RLP HL+E +S I +T K +E G PT + IA
Sbjct: 206 KFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIAT 265
Query: 204 SLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTL 263
+ M+ +K+R ++ SL+ + GD +I + P V + L
Sbjct: 266 RMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD----FIESD--GETPEDQVSKNLL 319
Query: 264 KDEVNKLINVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLK 322
++++ K+++ +L RER+++RL YGLD + T E+I + ++RER+RQ+ AL KL+
Sbjct: 320 REDLEKVLD-SLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 378
Query: 323 HAAR 326
H R
Sbjct: 379 HPNR 382
>G6FUP1_9CYAN (tr|G6FUP1) RNA polymerase sigma factor OS=Fischerella sp. JSC-11
GN=FJSC11DRAFT_2588 PE=3 SV=1
Length = 393
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 107/304 (35%), Positives = 178/304 (58%), Gaps = 9/304 (2%)
Query: 25 YVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRSEL 84
Y++ + +LL E ++L+ KI L L+ + RL+++L EP + A ++++ +
Sbjct: 88 YLQEIGRIRLLRADEEIELARKIADLLELERVRDRLQQQLEREPQYSEWAEAVQLPLPQF 147
Query: 85 RAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGF 144
R + A++++ SN+RLV+SIA++Y N G DL+Q G +GL+R EKFD KG+
Sbjct: 148 RHRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGY 207
Query: 145 KISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLI-RTAKFRLEERGITPTIDRIAK 203
K STY WWIRQ ++RA+ + SRT+RLP HL+E +S I +T K +E G PT + IA
Sbjct: 208 KFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIAT 267
Query: 204 SLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTL 263
+ M+ +K+R ++ SL+ + GD +I + P V + L
Sbjct: 268 RMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD----FIESD--GETPEDQVSKNLL 321
Query: 264 KDEVNKLINVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLK 322
++++ K+++ +L RER+++RL YGLD + T E+I + ++RER+RQ+ AL KL+
Sbjct: 322 REDLEKVLD-SLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 380
Query: 323 HAAR 326
H R
Sbjct: 381 HPNR 384
>K9UM88_9CHRO (tr|K9UM88) RNA polymerase sigma factor OS=Chamaesiphon minutus PCC
6605 GN=Cha6605_4648 PE=3 SV=1
Length = 380
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 110/305 (36%), Positives = 176/305 (57%), Gaps = 11/305 (3%)
Query: 25 YVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRSEL 84
Y++ + +LL E ++L+ KI L L+ + +L L EP D + AA + ++
Sbjct: 75 YLQEIGRIRLLRADEEIELARKIADLLELERMREKLLNDLDREPHDREWAAVASMPLNQF 134
Query: 85 RAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGF 144
R + A++++ SN+RLV+SIA++Y N G DL+Q G +GL+R EKFD KG+
Sbjct: 135 RHRLFLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGY 194
Query: 145 KISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLI-RTAKFRLEERGITPTIDRIAK 203
K STY WWIRQ ++RA+ + SRT+RLP HL+E +S I +T K +E G PT + IA
Sbjct: 195 KFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIAT 254
Query: 204 SLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYI-ADNRLENIPWHGVDEWT 262
+ M+ +K+R ++ SL+ + GD +I AD +P V +
Sbjct: 255 RMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD----FIEADG---EMPEDQVSKSL 307
Query: 263 LKDEVNKLINVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKL 321
L++++ +++ TL RER+++RL YGLD + T E+I + ++RER+RQ+ AL KL
Sbjct: 308 LREDLEGVLD-TLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKL 366
Query: 322 KHAAR 326
+H R
Sbjct: 367 RHPNR 371
>Q46GS6_PROMT (tr|Q46GS6) RNA polymerase sigma factor OS=Prochlorococcus marinus
(strain NATL2A) GN=PMN2A_1829 PE=3 SV=1
Length = 420
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 109/304 (35%), Positives = 177/304 (58%), Gaps = 9/304 (2%)
Query: 25 YVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRSEL 84
Y++ + +LL E ++L+ KI L L+E ++ + + G PS + A + +
Sbjct: 113 YLQEIGRIRLLRPDEEIELARKIADLLQLEEEAAQFESENGHFPSVKEWAVLADMPLARF 172
Query: 85 RAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGF 144
R + + A+E++ SN+RLV+SIA++Y N G DL+Q G +GL+R EKFD KG+
Sbjct: 173 RRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGY 232
Query: 145 KISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLI-RTAKFRLEERGITPTIDRIAK 203
K STY WWIRQ ++RA+ + SRT+RLP HL+E +S I +T K +E G PT + IA+
Sbjct: 233 KFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAE 292
Query: 204 SLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTL 263
S+ M+ +K+R ++ SL+ + G D+ + +EN P V + L
Sbjct: 293 SMEMTIEKLRFIAKSAQLPISLE-----TPIGKEEDSRLGDFIEADIEN-PEQDVAKTLL 346
Query: 264 KDEVNKLINVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLK 322
++++ ++ TL RER+++RL YGLD + T E+I + ++RER+RQ+ AL KL+
Sbjct: 347 REDLEGVL-ATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLR 405
Query: 323 HAAR 326
H R
Sbjct: 406 HPNR 409
>A2C0V5_PROM1 (tr|A2C0V5) RNA polymerase sigma factor OS=Prochlorococcus marinus
(strain NATL1A) GN=NATL1_05531 PE=3 SV=1
Length = 420
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 109/304 (35%), Positives = 177/304 (58%), Gaps = 9/304 (2%)
Query: 25 YVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRSEL 84
Y++ + +LL E ++L+ KI L L+E ++ + + G PS + A + +
Sbjct: 113 YLQEIGRIRLLRPDEEIELARKIADLLQLEEEAAQFESENGHFPSVKEWAVLADMPLTRF 172
Query: 85 RAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGF 144
R + + A+E++ SN+RLV+SIA++Y N G DL+Q G +GL+R EKFD KG+
Sbjct: 173 RRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGY 232
Query: 145 KISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLI-RTAKFRLEERGITPTIDRIAK 203
K STY WWIRQ ++RA+ + SRT+RLP HL+E +S I +T K +E G PT + IA+
Sbjct: 233 KFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAE 292
Query: 204 SLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTL 263
S+ M+ +K+R ++ SL+ + G D+ + +EN P V + L
Sbjct: 293 SMEMTIEKLRFIAKSAQLPISLE-----TPIGKEEDSRLGDFIEADIEN-PEQDVAKTLL 346
Query: 264 KDEVNKLINVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLK 322
++++ ++ TL RER+++RL YGLD + T E+I + ++RER+RQ+ AL KL+
Sbjct: 347 REDLEGVL-ATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLR 405
Query: 323 HAAR 326
H R
Sbjct: 406 HPNR 409
>K9YEA1_HALP7 (tr|K9YEA1) RNA polymerase sigma factor OS=Halothece sp. (strain
PCC 7418) GN=PCC7418_3051 PE=3 SV=1
Length = 375
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 106/313 (33%), Positives = 178/313 (56%), Gaps = 7/313 (2%)
Query: 24 GYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRSE 83
+ K + LL E V+L++++K+ + + L EKLG P+ Q+A +L++ E
Sbjct: 68 AFFKEMARYPLLQPDEEVELAQQVKLAADFEHKRQELAEKLGSPPTKQQLAEALEMGVKE 127
Query: 84 LRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKG 143
L K + +A+ R+ SN+RLV+SIA+RY N G DL+Q G IGL R EKFD +KG
Sbjct: 128 LDRKLYQGRVAKRRMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKG 187
Query: 144 FKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRL-EERGITPTIDRIA 202
+K STY YWWIRQ ++R + ++RT+RLP H+ E+L+ ++ A+ L +E PT +A
Sbjct: 188 YKFSTYAYWWIRQAITRTIANDARTIRLPIHIVEKLNKLKKAQRDLKQELQRNPTEAELA 247
Query: 203 KSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWT 262
++L +SQ ++ + + SL+ G DT + ++ +P ++E
Sbjct: 248 QALEVSQSQLHQLLQLRRQSLSLNHRV-----GKGEDTELLELLEDHEMRLPEDQMNEAM 302
Query: 263 LKDEVNKLINVTLVEREREIIRLYYGLD-KECLTWEDISKRIGLSRERVRQVGLVALEKL 321
+ E++ +++ L ERE+++I + YGL+ + T E++ LSRERVRQ+ A+ KL
Sbjct: 303 MNQEISDVLSDVLTEREKDVISMRYGLNASQPYTLEEVGLMFNLSRERVRQIQSKAMRKL 362
Query: 322 KHAARKREMEAML 334
+ R ++ L
Sbjct: 363 RRPQVARRLKGWL 375
>A2C7M0_PROM3 (tr|A2C7M0) RNA polymerase sigma factor OS=Prochlorococcus marinus
(strain MIT 9303) GN=P9303_07291 PE=3 SV=1
Length = 444
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 109/304 (35%), Positives = 178/304 (58%), Gaps = 9/304 (2%)
Query: 25 YVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRSEL 84
Y++ + +LL E ++L+ KI L L+E + G P++ + AA +++ +
Sbjct: 139 YLQEIGRIRLLRPDEEIELARKIADLLHLEELAEQFNSDHGHYPNNKEWAALVEMPNIKF 198
Query: 85 RAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGF 144
R + + A+E++ SN+RLV+SIA++Y N G DL+Q G +GL+R EKFD KG+
Sbjct: 199 RRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGY 258
Query: 145 KISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLI-RTAKFRLEERGITPTIDRIAK 203
K STY WWIRQ ++RA+ + SRT+RLP HL+E +S I +T K +E G PT + IA+
Sbjct: 259 KFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAE 318
Query: 204 SLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTL 263
S+ M+ +K+R ++ SL+ + G D+ ++ EN P V + L
Sbjct: 319 SMEMTIEKLRFIAKSAQLPISLE-----TPIGKEEDSRLGDFIESDTEN-PEQDVAKNLL 372
Query: 264 KDEVNKLINVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLK 322
++++ ++ TL RER+++RL YGLD + T E+I + ++RER+RQ+ AL KL+
Sbjct: 373 REDLEGVL-ATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFEVTRERIRQIEAKALRKLR 431
Query: 323 HAAR 326
H R
Sbjct: 432 HPNR 435
>K9VRX0_9CYAN (tr|K9VRX0) RNA polymerase sigma factor OS=Oscillatoria
nigro-viridis PCC 7112 GN=Osc7112_5754 PE=3 SV=1
Length = 388
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 108/304 (35%), Positives = 176/304 (57%), Gaps = 9/304 (2%)
Query: 25 YVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRSEL 84
Y++ + +LL E ++L+ KI L L+ + +L E+ EP D + A +++++
Sbjct: 83 YLQEIGRIRLLRADEEIELARKIADLLELERVREQLLEEYNREPKDSEWANAVEMALPAF 142
Query: 85 RAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGF 144
R + A+E++ SN+RLV+SIA++Y N G DL+Q G +GL+R EKFD KG+
Sbjct: 143 RHRLHVGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGY 202
Query: 145 KISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLI-RTAKFRLEERGITPTIDRIAK 203
K STY WWIRQ ++RA+ + SRT+RLP HL+E +S I +T K +E G PT + IA
Sbjct: 203 KFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIAT 262
Query: 204 SLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTL 263
+ M+ +K+R ++ SL+ + GD +I + P V + L
Sbjct: 263 RMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD----FIESD--GETPEDQVSKNLL 316
Query: 264 KDEVNKLINVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLK 322
++++ +++ TL RER+++RL YGLD + T E+I + ++RER+RQ+ AL KL+
Sbjct: 317 REDLESVLD-TLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 375
Query: 323 HAAR 326
H R
Sbjct: 376 HPNR 379
>K9PYY3_9CYAN (tr|K9PYY3) RNA polymerase, sigma 70 subunit, RpoD subfamily
OS=Leptolyngbya sp. PCC 7376 GN=Lepto7376_1803 PE=4 SV=1
Length = 318
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 109/317 (34%), Positives = 190/317 (59%), Gaps = 25/317 (7%)
Query: 23 KGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRS 82
+ Y+K + LL+H E V S +++ ++L++ K+ L E EP+ + A + KI++
Sbjct: 12 RSYLKEIGRVPLLTHEEEVVYSRRVQQMVALEKLKAELTEHQEDEPTLKEWAKAAKITQK 71
Query: 83 ELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSK 142
EL+ + A++++ +N+RLV+S+A++Y ++ DL+Q G IG+ RG+EKFD +K
Sbjct: 72 ELKKRMSIGAQAKQKMVEANLRLVVSVAKKYIKRNLDLLDLIQEGTIGMQRGVEKFDPTK 131
Query: 143 GFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRLEER-GITPTIDRI 201
G++ STY YWWIRQ ++RA+ E SRT+RLP H+ E+L+ I+ A+ +L ++ G TI +
Sbjct: 132 GYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQKNGRAATIPEL 191
Query: 202 AKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGV--D 259
A+ L+++ K+VR+ E + SLD GD + + +E + HG D
Sbjct: 192 AEELDLTTKQVRDYLEKSRQPLSLDLRV--------GDNNDTEL----IELLEDHGTTPD 239
Query: 260 EW----TLKDEVNKLINVTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVG 314
++ LK +++++I+ L +++E++ L +GL D + T I + + +SRERVRQ+
Sbjct: 240 DFATSAALKRDLHRMIS-DLTAQQQEVLTLRFGLNDGQPHTLAKIGEHLSISRERVRQIE 298
Query: 315 LVALEKLKHAARKREME 331
AL KL RKR+ E
Sbjct: 299 REALSKL----RKRKSE 311
>Q3CZ52_STRAG (tr|Q3CZ52) RNA polymerase sigma factor OS=Streptococcus agalactiae
H36B GN=SAI_1531 PE=3 SV=1
Length = 369
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 157/245 (64%), Gaps = 10/245 (4%)
Query: 93 LARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYW 152
+A++RLA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGFK STY W
Sbjct: 130 MAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATW 189
Query: 153 WIRQGVSRALVENSRTLRLPTHLHERLS-LIRTAKFRLEERGITPTIDRIAKSLNMSQKK 211
WIRQ ++RA+ + +RT+R+P H+ E ++ L+R + L+E G PT ++IA+ ++M+ K
Sbjct: 190 WIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDK 249
Query: 212 VRNATEAISKVFSLDREAFPSLNGLPGDTH-HCYIADNRLENIPWHGVDEWTLKDEVNKL 270
VR + + SL+ G D+H +I D +EN P L+++++++
Sbjct: 250 VREILKIAQEPVSLETPI-----GEEDDSHLGDFIEDEVIEN-PVDYTTRVVLREQLDEV 303
Query: 271 INVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKHAARKRE 329
++ TL +RE ++RL +GLD + T ED+ K ++RER+RQ+ AL KL+H +R ++
Sbjct: 304 LD-TLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQ 362
Query: 330 MEAML 334
++ +
Sbjct: 363 LKDFM 367
>M1YC18_STRAG (tr|M1YC18) RNA polymerase sigma factor OS=Streptococcus agalactiae
SS1014 GN=GBS1014_1291 PE=3 SV=1
Length = 369
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 157/245 (64%), Gaps = 10/245 (4%)
Query: 93 LARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYW 152
+A++RLA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGFK STY W
Sbjct: 130 MAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATW 189
Query: 153 WIRQGVSRALVENSRTLRLPTHLHERLS-LIRTAKFRLEERGITPTIDRIAKSLNMSQKK 211
WIRQ ++RA+ + +RT+R+P H+ E ++ L+R + L+E G PT ++IA+ ++M+ K
Sbjct: 190 WIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDK 249
Query: 212 VRNATEAISKVFSLDREAFPSLNGLPGDTH-HCYIADNRLENIPWHGVDEWTLKDEVNKL 270
VR + + SL+ G D+H +I D +EN P L+++++++
Sbjct: 250 VREILKIAQEPVSLETPI-----GEEDDSHLGDFIEDEVIEN-PVDYTTRVVLREQLDEV 303
Query: 271 INVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKHAARKRE 329
++ TL +RE ++RL +GLD + T ED+ K ++RER+RQ+ AL KL+H +R ++
Sbjct: 304 LD-TLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQ 362
Query: 330 MEAML 334
++ +
Sbjct: 363 LKDFM 367
>Q9KHE8_NOSS1 (tr|Q9KHE8) Group 2 sigma 70-type sigma factor D OS=Nostoc sp.
(strain PCC 7120 / UTEX 2576) GN=sigD PE=4 SV=1
Length = 332
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 100/307 (32%), Positives = 179/307 (58%), Gaps = 15/307 (4%)
Query: 23 KGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRS 82
+ Y++ + LLSH E ++ ++++ +L E + L + G EPS ++ A + ++ +
Sbjct: 26 RTYLREIGRVPLLSHEEEIRYGKQVQRSTTLQEMREELATQSGREPSVEEWAKAANLNPA 85
Query: 83 ELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSK 142
+L + +A+ ++ +N+RLV+S+A++Y ++ DL+Q G IG+ RG+EKFD +K
Sbjct: 86 DLLEAIADGEIAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTK 145
Query: 143 GFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRLEER-GITPTIDRI 201
G++ STY YWWIRQ ++RA+ E +RT+RLP H+ E+L+ I+ A+ +L +R G PT +
Sbjct: 146 GYRFSTYAYWWIRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRQLSQRLGRAPTAGEL 205
Query: 202 AKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEW 261
A L ++ K+VR E SLD GD + + + LE+ P +++
Sbjct: 206 ANELELTPKQVREYLEKARLPLSLDLRL--------GDNYDTELGE-MLED-PGASPEDF 255
Query: 262 TLKDEVNKLINV---TLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVA 317
++ ++ + V L +++E+I L +GL D + LT I + + +SRERVRQ+ A
Sbjct: 256 VMQSSLSNDLEVLMEQLTPQQKEVITLRFGLIDGQALTLARIGEILNISRERVRQIEREA 315
Query: 318 LEKLKHA 324
L KL+ +
Sbjct: 316 LTKLRKS 322
>G6FRT8_9CYAN (tr|G6FRT8) RNA polymerase, sigma 70 subunit, RpoD subfamily
OS=Fischerella sp. JSC-11 GN=FJSC11DRAFT_1585 PE=4 SV=1
Length = 318
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 101/307 (32%), Positives = 179/307 (58%), Gaps = 15/307 (4%)
Query: 23 KGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRS 82
+ Y++ + LL+H E + ++++ +L E + L +LG EP+ ++ A + ++ +
Sbjct: 12 RTYLREIGRVPLLTHEEEIFYGKQVQRATALHEVRELLATQLGREPTLEEWATATQLELT 71
Query: 83 ELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSK 142
EL + +A+ ++ +N+RLV+S+A++Y ++ DL+Q G IG+ RG+EKFD +K
Sbjct: 72 ELNQAIADAEIAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTK 131
Query: 143 GFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRLEER-GITPTIDRI 201
G++ STY YWWIRQ ++RA+ E RT+RLP H+ E+L+ I+ A+ +L +R G P++ +
Sbjct: 132 GYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQRLGRAPSVAEL 191
Query: 202 AKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENI---PWHGV 258
A+ L ++ ++VR E SLD GD + + + LE+ P V
Sbjct: 192 AQELELTSRQVREYLEKARVPLSLDIRL--------GDNYDTELGEM-LEDPGASPEEFV 242
Query: 259 DEWTLKDEVNKLINVTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVA 317
+ +L ++ +L+ L ++RE+I L +GL D LT I + + +SRERVRQ+ A
Sbjct: 243 TQSSLSGDLERLM-AELTPQQREVISLRFGLNDGHALTLAKIGEILNISRERVRQIEREA 301
Query: 318 LEKLKHA 324
L KL+ +
Sbjct: 302 LSKLRKS 308
>P96034_SYNSP (tr|P96034) Sigma factor OS=Synechococcus sp. GN=sigD PE=4 SV=1
Length = 317
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 104/307 (33%), Positives = 181/307 (58%), Gaps = 10/307 (3%)
Query: 23 KGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRS 82
+ Y+K + LL+H E V S +++ ++L++ K+ L EK EPS + A + +S+
Sbjct: 12 RTYLKEIGRVPLLTHEEEVLYSRRVQKMVNLEKLKAELAEKQDQEPSLKEWAQAANLSQR 71
Query: 83 ELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSK 142
+L+ + + A++++ +N+RLV+S+A++Y ++ DL+Q G IG+ RG+EKFD +K
Sbjct: 72 QLKKQLLLGKQAKQKMVEANLRLVVSVAKKYIKRNMDLLDLIQEGTIGMQRGVEKFDPTK 131
Query: 143 GFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRL-EERGITPTIDRI 201
G++ STY YWWIRQ ++RA+ E SRT+RLP H+ E+L+ I+ A+ +L + G + +I +
Sbjct: 132 GYRFSTYAYWWIRQAITRAIAEQSRTIRLPIHITEKLNKIKKAQRQLAQANGRSASIPEL 191
Query: 202 AKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEW 261
A L ++ K+VR+ E + SLD G DT + D+ +P
Sbjct: 192 ADELGLTTKQVRDYLEKSRQPLSLDLRV-----GDNNDTELIELEDD--GELPDDYATHA 244
Query: 262 TLKDEVNKLINVTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEK 320
LK ++ +++N L +++E++ L +GL D T I + + +SRERVRQ+ +L K
Sbjct: 245 ALKRDLARMLN-DLTAQQQEVLTLRFGLRDGTPHTLAKIGEHLNISRERVRQIEHGSLAK 303
Query: 321 LKHAARK 327
L+ RK
Sbjct: 304 LRKQKRK 310
>Q5N3S3_SYNP6 (tr|Q5N3S3) Group2 RNA polymerase sigma factor RpoD3
OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 /
SAUG 1402/1) GN=rpoD3 PE=4 SV=1
Length = 326
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 105/308 (34%), Positives = 182/308 (59%), Gaps = 16/308 (5%)
Query: 23 KGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGC-EPSDDQIAASLKISR 81
+ Y++ + LL+H E V L ++++ + L E + L+ + G +PSD + AA+ +S
Sbjct: 19 RTYLREIGRVPLLTHEEEVVLGKRVQQWMKLQELRQTLQSEEGDRDPSDLEWAAAAGLSI 78
Query: 82 SELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSS 141
ELR + A+ ++ +N+RLV+S+A++Y ++ DL+Q G IG+ RG+EKFD +
Sbjct: 79 EELRQQQHLGEQAKRKMIEANLRLVVSVAKKYLKRNMDLLDLIQEGTIGMQRGVEKFDPT 138
Query: 142 KGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRLEER-GITPTIDR 200
KG++ STY YWWIRQ ++RA+ E +RT+RLP H+ E+L+ I+ + +L ++ G T T+
Sbjct: 139 KGYRFSTYAYWWIRQAITRAIAEKARTIRLPIHITEKLNKIKKMQRQLSQQLGRTATLPE 198
Query: 201 IAKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLE---NIPWHG 257
+A +L+++ +VR+ E SLD GD + D LE P
Sbjct: 199 LAAALDLTPAQVRDYLEKARHPLSLDLRV--------GDNQDTELGD-LLETDCTTPEEF 249
Query: 258 VDEWTLKDEVNKLINVTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLV 316
+ +++ ++++L++ L E++R++I L YGL D + +T I R+ +SRERVRQ+
Sbjct: 250 TLQASMRRDIDRLLD-QLTEQQRQVIALRYGLEDGQVMTLASIGDRLQISRERVRQLERE 308
Query: 317 ALEKLKHA 324
AL L+ A
Sbjct: 309 ALHTLRQA 316
>B2J979_NOSP7 (tr|B2J979) RNA polymerase, sigma 70 subunit, RpoD family OS=Nostoc
punctiforme (strain ATCC 29133 / PCC 73102)
GN=Npun_R5797 PE=4 SV=1
Length = 332
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 102/307 (33%), Positives = 180/307 (58%), Gaps = 15/307 (4%)
Query: 23 KGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRS 82
+ Y++ + LL+H E + ++++ +L E + L +LG +P+ ++ A + K+
Sbjct: 26 RTYLREIGRVPLLTHEEEIFYGKQVQRSCTLHESRESLATQLGRQPTLEEWAKATKLEPV 85
Query: 83 ELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSK 142
EL + +A+ ++ +N+RLV+S+A++Y ++ DL+Q G IG+ RG+EKFD +K
Sbjct: 86 ELNEAIADGEIAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTK 145
Query: 143 GFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRLEER-GITPTIDRI 201
G++ STY YWWIRQ ++RA+ E +RT+RLP H+ E+L+ I+ A+ +L ++ G PT +
Sbjct: 146 GYRFSTYAYWWIRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRQLSQKLGRAPTAGEL 205
Query: 202 AKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENI---PWHGV 258
A+ L ++ K+VR E SLD GD + + + LE+ P V
Sbjct: 206 AQELELTPKQVREYLEKARLPLSLDLRL--------GDNYDTELGE-MLEDPGASPEEFV 256
Query: 259 DEWTLKDEVNKLINVTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVA 317
+ +L ++++L+ L ++RE+I L +GL D + LT I + + +SRERVRQ+ A
Sbjct: 257 MQSSLSYDLDRLMG-DLTPQQREVITLRFGLTDGQALTLAKIGEILNISRERVRQIEREA 315
Query: 318 LEKLKHA 324
L KL+ +
Sbjct: 316 LTKLRKS 322
>E8JP19_STREI (tr|E8JP19) RNA polymerase sigma factor OS=Streptococcus equinus
ATCC 9812 GN=rpoD PE=3 SV=1
Length = 369
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 93/240 (38%), Positives = 154/240 (64%), Gaps = 10/240 (4%)
Query: 94 ARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 153
A++RLA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGFK STY WW
Sbjct: 131 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWW 190
Query: 154 IRQGVSRALVENSRTLRLPTHLHERLS-LIRTAKFRLEERGITPTIDRIAKSLNMSQKKV 212
IRQ ++RA+ + +RT+R+P H+ E ++ L+R + L+E G PT ++IA+ ++MS KV
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMSPDKV 250
Query: 213 RNATEAISKVFSLDREAFPSLNGLPGDTH-HCYIADNRLENIPWHGVDEWTLKDEVNKLI 271
R + + SL+ G D+H +I D +EN P L++++++++
Sbjct: 251 REILKIAQEPVSLETPI-----GEEDDSHLGDFIEDEVIEN-PVDYTTRVVLREQLDEVL 304
Query: 272 NVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKHAARKREM 330
+ TL +RE ++RL +GLD + T ED+ K ++RER+RQ+ AL KL+H +R +++
Sbjct: 305 D-TLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQL 363
>Q2JIA4_SYNJB (tr|Q2JIA4) RNA polymerase sigma factor OS=Synechococcus sp.
(strain JA-2-3B'a(2-13)) GN=CYB_2734 PE=3 SV=1
Length = 366
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 107/313 (34%), Positives = 182/313 (58%), Gaps = 18/313 (5%)
Query: 25 YVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPS-------DDQIAASL 77
Y++ + LL E V L++K++ + L + + RL+++LG +P+ +Q
Sbjct: 51 YLQEIGRVPLLGRDEEVALAQKVQDYMKLLDLRLRLQKELGRDPTLAEWVAKANQYPEWA 110
Query: 78 KISRSELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEK 137
+++ +L+ A+E + +N+RLV+S+A++Y N G E+ DL+Q G +GL R +EK
Sbjct: 111 QLTPEKLQQIQRIGKRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEK 170
Query: 138 FDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRL-EERGITP 196
FD KG++ STY YWWIRQG++RA+ SRT+RLP H+ E+L+ I+ A+ +L +E+G TP
Sbjct: 171 FDPKKGYRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKLSQEKGRTP 230
Query: 197 TIDRIAKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENI-PW 255
TI+ IA L M+ +VR + + SL+ + + GD ++I P
Sbjct: 231 TIEDIASELEMTPPQVRELLVRVPRSVSLETKVGKDKDTELGDLLET-------DDISPE 283
Query: 256 HGVDEWTLKDEVNKLINVTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVG 314
+ L ++ +L++ L RER++IR+ +GL D + +I + + LSRERVRQ+
Sbjct: 284 ETMMREALHRDLQQLLS-DLTSRERDVIRMRFGLGDGRTYSLAEIGRALDLSRERVRQIE 342
Query: 315 LVALEKLKHAARK 327
AL+KL+ R+
Sbjct: 343 AKALQKLRQPKRR 355
>K9TBA0_9CYAN (tr|K9TBA0) RNA polymerase sigma factor, cyanobacterial RpoD-like
family OS=Pleurocapsa sp. PCC 7327 GN=Ple7327_4608 PE=4
SV=1
Length = 318
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 109/306 (35%), Positives = 184/306 (60%), Gaps = 15/306 (4%)
Query: 23 KGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRS 82
+ Y++ + LL+H E + +++++ + L+ K LK+KLG EP+D + AA+ +++ +
Sbjct: 12 RAYLREIGRVPLLTHEEEIHYAKRVQRLVVLENLKESLKQKLGKEPTDSEWAAAAELTEA 71
Query: 83 ELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSK 142
ELR A+ ++ +N+RLV+S+A++Y ++ DL+Q G +G+ RG+EKFD +K
Sbjct: 72 ELRNCIAAGDAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTLGMQRGVEKFDPTK 131
Query: 143 GFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRL-EERGITPTIDRI 201
G++ STY YWWIRQ ++RA+ E SRT+RLP H+ E+L+ I+ A+ +L +E G TI +
Sbjct: 132 GYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQENGRAATIAEL 191
Query: 202 AKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLEN---IPWHGV 258
A+ L ++ K+VR E + SLD GD H + + LE+ +P
Sbjct: 192 AQELELTPKQVREYLERARQPLSLDLRV--------GDNHDTELGE-LLEDTGLLPEDYA 242
Query: 259 DEWTLKDEVNKLINVTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVA 317
+L+ ++ KL+ L ++RE++ L +GL D + LT I R+ +SRERVRQ+ A
Sbjct: 243 IHSSLQLDLEKLM-ADLTPQQREVLALRFGLTDGKPLTLAKIGIRLNISRERVRQIEREA 301
Query: 318 LEKLKH 323
L KL+
Sbjct: 302 LSKLRQ 307
>Q8E4A5_STRA3 (tr|Q8E4A5) RNA polymerase sigma factor OS=Streptococcus agalactiae
serotype III (strain NEM316) GN=rpoD PE=3 SV=1
Length = 369
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 157/245 (64%), Gaps = 10/245 (4%)
Query: 93 LARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYW 152
+A++RLA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGFK STY W
Sbjct: 130 MAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATW 189
Query: 153 WIRQGVSRALVENSRTLRLPTHLHERLS-LIRTAKFRLEERGITPTIDRIAKSLNMSQKK 211
WIRQ ++RA+ + +RT+R+P H+ E ++ L+R + L+E G PT ++IA+ ++M+ K
Sbjct: 190 WIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDK 249
Query: 212 VRNATEAISKVFSLDREAFPSLNGLPGDTH-HCYIADNRLENIPWHGVDEWTLKDEVNKL 270
VR + + SL+ G D+H +I D +EN P L+++++++
Sbjct: 250 VREILKIAQEPVSLETPI-----GEEDDSHLGDFIEDEVIEN-PVDYTTRVVLREQLDEV 303
Query: 271 INVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKHAARKRE 329
++ TL +RE ++RL +GLD + T ED+ K ++RER+RQ+ AL KL+H +R ++
Sbjct: 304 LD-TLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQ 362
Query: 330 MEAML 334
++ +
Sbjct: 363 LKDFM 367
>Q8DYP8_STRA5 (tr|Q8DYP8) RNA polymerase sigma factor OS=Streptococcus agalactiae
serotype V (strain ATCC BAA-611 / 2603 V/R) GN=rpoD PE=3
SV=1
Length = 369
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 157/245 (64%), Gaps = 10/245 (4%)
Query: 93 LARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYW 152
+A++RLA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGFK STY W
Sbjct: 130 MAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATW 189
Query: 153 WIRQGVSRALVENSRTLRLPTHLHERLS-LIRTAKFRLEERGITPTIDRIAKSLNMSQKK 211
WIRQ ++RA+ + +RT+R+P H+ E ++ L+R + L+E G PT ++IA+ ++M+ K
Sbjct: 190 WIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDK 249
Query: 212 VRNATEAISKVFSLDREAFPSLNGLPGDTH-HCYIADNRLENIPWHGVDEWTLKDEVNKL 270
VR + + SL+ G D+H +I D +EN P L+++++++
Sbjct: 250 VREILKIAQEPVSLETPI-----GEEDDSHLGDFIEDEVIEN-PVDYTTRVVLREQLDEV 303
Query: 271 INVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKHAARKRE 329
++ TL +RE ++RL +GLD + T ED+ K ++RER+RQ+ AL KL+H +R ++
Sbjct: 304 LD-TLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQ 362
Query: 330 MEAML 334
++ +
Sbjct: 363 LKDFM 367
>Q3K084_STRA1 (tr|Q3K084) RNA polymerase sigma factor OS=Streptococcus agalactiae
serotype Ia (strain ATCC 27591 / A909 / CDC SS700)
GN=rpoD PE=3 SV=1
Length = 369
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 157/245 (64%), Gaps = 10/245 (4%)
Query: 93 LARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYW 152
+A++RLA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGFK STY W
Sbjct: 130 MAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATW 189
Query: 153 WIRQGVSRALVENSRTLRLPTHLHERLS-LIRTAKFRLEERGITPTIDRIAKSLNMSQKK 211
WIRQ ++RA+ + +RT+R+P H+ E ++ L+R + L+E G PT ++IA+ ++M+ K
Sbjct: 190 WIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDK 249
Query: 212 VRNATEAISKVFSLDREAFPSLNGLPGDTH-HCYIADNRLENIPWHGVDEWTLKDEVNKL 270
VR + + SL+ G D+H +I D +EN P L+++++++
Sbjct: 250 VREILKIAQEPVSLETPI-----GEEDDSHLGDFIEDEVIEN-PVDYTTRVVLREQLDEV 303
Query: 271 INVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKHAARKRE 329
++ TL +RE ++RL +GLD + T ED+ K ++RER+RQ+ AL KL+H +R ++
Sbjct: 304 LD-TLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQ 362
Query: 330 MEAML 334
++ +
Sbjct: 363 LKDFM 367
>J9YT78_STRA2 (tr|J9YT78) RNA polymerase sigma factor OS=Streptococcus agalactiae
serotype Ia (strain GD201008-001) GN=rpoD PE=3 SV=1
Length = 369
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 157/245 (64%), Gaps = 10/245 (4%)
Query: 93 LARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYW 152
+A++RLA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGFK STY W
Sbjct: 130 MAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATW 189
Query: 153 WIRQGVSRALVENSRTLRLPTHLHERLS-LIRTAKFRLEERGITPTIDRIAKSLNMSQKK 211
WIRQ ++RA+ + +RT+R+P H+ E ++ L+R + L+E G PT ++IA+ ++M+ K
Sbjct: 190 WIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDK 249
Query: 212 VRNATEAISKVFSLDREAFPSLNGLPGDTH-HCYIADNRLENIPWHGVDEWTLKDEVNKL 270
VR + + SL+ G D+H +I D +EN P L+++++++
Sbjct: 250 VREILKIAQEPVSLETPI-----GEEDDSHLGDFIEDEVIEN-PVDYTTRVVLREQLDEV 303
Query: 271 INVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKHAARKRE 329
++ TL +RE ++RL +GLD + T ED+ K ++RER+RQ+ AL KL+H +R ++
Sbjct: 304 LD-TLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQ 362
Query: 330 MEAML 334
++ +
Sbjct: 363 LKDFM 367
>R4ZV95_STRAG (tr|R4ZV95) RNA polymerase sigma factor RpoD OS=Streptococcus
agalactiae ILRI112 GN=SAIL_14860 PE=4 SV=1
Length = 369
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 157/245 (64%), Gaps = 10/245 (4%)
Query: 93 LARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYW 152
+A++RLA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGFK STY W
Sbjct: 130 MAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATW 189
Query: 153 WIRQGVSRALVENSRTLRLPTHLHERLS-LIRTAKFRLEERGITPTIDRIAKSLNMSQKK 211
WIRQ ++RA+ + +RT+R+P H+ E ++ L+R + L+E G PT ++IA+ ++M+ K
Sbjct: 190 WIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDK 249
Query: 212 VRNATEAISKVFSLDREAFPSLNGLPGDTH-HCYIADNRLENIPWHGVDEWTLKDEVNKL 270
VR + + SL+ G D+H +I D +EN P L+++++++
Sbjct: 250 VREILKIAQEPVSLETPI-----GEEDDSHLGDFIEDEVIEN-PVDYTTRVVLREQLDEV 303
Query: 271 INVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKHAARKRE 329
++ TL +RE ++RL +GLD + T ED+ K ++RER+RQ+ AL KL+H +R ++
Sbjct: 304 LD-TLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQ 362
Query: 330 MEAML 334
++ +
Sbjct: 363 LKDFM 367
>R4ZT55_STRAG (tr|R4ZT55) RNA polymerase sigma factor RpoD OS=Streptococcus
agalactiae ILRI005 GN=MSA_15510 PE=4 SV=1
Length = 369
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 157/245 (64%), Gaps = 10/245 (4%)
Query: 93 LARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYW 152
+A++RLA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGFK STY W
Sbjct: 130 MAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATW 189
Query: 153 WIRQGVSRALVENSRTLRLPTHLHERLS-LIRTAKFRLEERGITPTIDRIAKSLNMSQKK 211
WIRQ ++RA+ + +RT+R+P H+ E ++ L+R + L+E G PT ++IA+ ++M+ K
Sbjct: 190 WIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDK 249
Query: 212 VRNATEAISKVFSLDREAFPSLNGLPGDTH-HCYIADNRLENIPWHGVDEWTLKDEVNKL 270
VR + + SL+ G D+H +I D +EN P L+++++++
Sbjct: 250 VREILKIAQEPVSLETPI-----GEEDDSHLGDFIEDEVIEN-PVDYTTRVVLREQLDEV 303
Query: 271 INVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKHAARKRE 329
++ TL +RE ++RL +GLD + T ED+ K ++RER+RQ+ AL KL+H +R ++
Sbjct: 304 LD-TLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQ 362
Query: 330 MEAML 334
++ +
Sbjct: 363 LKDFM 367
>R4ZN32_STRAG (tr|R4ZN32) RNA polymerase sigma factor RpoD OS=Streptococcus
agalactiae 09mas018883 GN=BSA_15080 PE=4 SV=1
Length = 369
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 157/245 (64%), Gaps = 10/245 (4%)
Query: 93 LARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYW 152
+A++RLA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGFK STY W
Sbjct: 130 MAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATW 189
Query: 153 WIRQGVSRALVENSRTLRLPTHLHERLS-LIRTAKFRLEERGITPTIDRIAKSLNMSQKK 211
WIRQ ++RA+ + +RT+R+P H+ E ++ L+R + L+E G PT ++IA+ ++M+ K
Sbjct: 190 WIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDK 249
Query: 212 VRNATEAISKVFSLDREAFPSLNGLPGDTH-HCYIADNRLENIPWHGVDEWTLKDEVNKL 270
VR + + SL+ G D+H +I D +EN P L+++++++
Sbjct: 250 VREILKIAQEPVSLETPI-----GEEDDSHLGDFIEDEVIEN-PVDYTTRVVLREQLDEV 303
Query: 271 INVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKHAARKRE 329
++ TL +RE ++RL +GLD + T ED+ K ++RER+RQ+ AL KL+H +R ++
Sbjct: 304 LD-TLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQ 362
Query: 330 MEAML 334
++ +
Sbjct: 363 LKDFM 367
>Q3DIM8_STRAG (tr|Q3DIM8) RNA polymerase sigma factor OS=Streptococcus agalactiae
515 GN=SAL_1507 PE=3 SV=1
Length = 369
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 157/245 (64%), Gaps = 10/245 (4%)
Query: 93 LARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYW 152
+A++RLA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGFK STY W
Sbjct: 130 MAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATW 189
Query: 153 WIRQGVSRALVENSRTLRLPTHLHERLS-LIRTAKFRLEERGITPTIDRIAKSLNMSQKK 211
WIRQ ++RA+ + +RT+R+P H+ E ++ L+R + L+E G PT ++IA+ ++M+ K
Sbjct: 190 WIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDK 249
Query: 212 VRNATEAISKVFSLDREAFPSLNGLPGDTH-HCYIADNRLENIPWHGVDEWTLKDEVNKL 270
VR + + SL+ G D+H +I D +EN P L+++++++
Sbjct: 250 VREILKIAQEPVSLETPI-----GEEDDSHLGDFIEDEVIEN-PVDYTTRVVLREQLDEV 303
Query: 271 INVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKHAARKRE 329
++ TL +RE ++RL +GLD + T ED+ K ++RER+RQ+ AL KL+H +R ++
Sbjct: 304 LD-TLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQ 362
Query: 330 MEAML 334
++ +
Sbjct: 363 LKDFM 367
>Q3DC03_STRAG (tr|Q3DC03) RNA polymerase sigma factor OS=Streptococcus agalactiae
CJB111 GN=SAM_1393 PE=3 SV=1
Length = 369
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 157/245 (64%), Gaps = 10/245 (4%)
Query: 93 LARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYW 152
+A++RLA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGFK STY W
Sbjct: 130 MAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATW 189
Query: 153 WIRQGVSRALVENSRTLRLPTHLHERLS-LIRTAKFRLEERGITPTIDRIAKSLNMSQKK 211
WIRQ ++RA+ + +RT+R+P H+ E ++ L+R + L+E G PT ++IA+ ++M+ K
Sbjct: 190 WIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDK 249
Query: 212 VRNATEAISKVFSLDREAFPSLNGLPGDTH-HCYIADNRLENIPWHGVDEWTLKDEVNKL 270
VR + + SL+ G D+H +I D +EN P L+++++++
Sbjct: 250 VREILKIAQEPVSLETPI-----GEEDDSHLGDFIEDEVIEN-PVDYTTRVVLREQLDEV 303
Query: 271 INVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKHAARKRE 329
++ TL +RE ++RL +GLD + T ED+ K ++RER+RQ+ AL KL+H +R ++
Sbjct: 304 LD-TLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQ 362
Query: 330 MEAML 334
++ +
Sbjct: 363 LKDFM 367
>Q3D699_STRAG (tr|Q3D699) RNA polymerase sigma factor OS=Streptococcus agalactiae
COH1 GN=SAN_1543 PE=3 SV=1
Length = 369
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 157/245 (64%), Gaps = 10/245 (4%)
Query: 93 LARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYW 152
+A++RLA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGFK STY W
Sbjct: 130 MAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATW 189
Query: 153 WIRQGVSRALVENSRTLRLPTHLHERLS-LIRTAKFRLEERGITPTIDRIAKSLNMSQKK 211
WIRQ ++RA+ + +RT+R+P H+ E ++ L+R + L+E G PT ++IA+ ++M+ K
Sbjct: 190 WIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDK 249
Query: 212 VRNATEAISKVFSLDREAFPSLNGLPGDTH-HCYIADNRLENIPWHGVDEWTLKDEVNKL 270
VR + + SL+ G D+H +I D +EN P L+++++++
Sbjct: 250 VREILKIAQEPVSLETPI-----GEEDDSHLGDFIEDEVIEN-PVDYTTRVVLREQLDEV 303
Query: 271 INVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKHAARKRE 329
++ TL +RE ++RL +GLD + T ED+ K ++RER+RQ+ AL KL+H +R ++
Sbjct: 304 LD-TLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQ 362
Query: 330 MEAML 334
++ +
Sbjct: 363 LKDFM 367
>M1XU13_STRAG (tr|M1XU13) RNA polymerase sigma factor OS=Streptococcus agalactiae
CF01173 GN=GBS1173_1235 PE=3 SV=1
Length = 369
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 157/245 (64%), Gaps = 10/245 (4%)
Query: 93 LARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYW 152
+A++RLA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGFK STY W
Sbjct: 130 MAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATW 189
Query: 153 WIRQGVSRALVENSRTLRLPTHLHERLS-LIRTAKFRLEERGITPTIDRIAKSLNMSQKK 211
WIRQ ++RA+ + +RT+R+P H+ E ++ L+R + L+E G PT ++IA+ ++M+ K
Sbjct: 190 WIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDK 249
Query: 212 VRNATEAISKVFSLDREAFPSLNGLPGDTH-HCYIADNRLENIPWHGVDEWTLKDEVNKL 270
VR + + SL+ G D+H +I D +EN P L+++++++
Sbjct: 250 VREILKIAQEPVSLETPI-----GEEDDSHLGDFIEDEVIEN-PVDYTTRVVLREQLDEV 303
Query: 271 INVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKHAARKRE 329
++ TL +RE ++RL +GLD + T ED+ K ++RER+RQ+ AL KL+H +R ++
Sbjct: 304 LD-TLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQ 362
Query: 330 MEAML 334
++ +
Sbjct: 363 LKDFM 367
>J8SZK7_STRAG (tr|J8SZK7) RNA polymerase sigma factor OS=Streptococcus agalactiae
GB00112 GN=GB112_01009 PE=3 SV=1
Length = 369
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 157/245 (64%), Gaps = 10/245 (4%)
Query: 93 LARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYW 152
+A++RLA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGFK STY W
Sbjct: 130 MAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATW 189
Query: 153 WIRQGVSRALVENSRTLRLPTHLHERLS-LIRTAKFRLEERGITPTIDRIAKSLNMSQKK 211
WIRQ ++RA+ + +RT+R+P H+ E ++ L+R + L+E G PT ++IA+ ++M+ K
Sbjct: 190 WIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDK 249
Query: 212 VRNATEAISKVFSLDREAFPSLNGLPGDTH-HCYIADNRLENIPWHGVDEWTLKDEVNKL 270
VR + + SL+ G D+H +I D +EN P L+++++++
Sbjct: 250 VREILKIAQEPVSLETPI-----GEEDDSHLGDFIEDEVIEN-PVDYTTRVVLREQLDEV 303
Query: 271 INVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKHAARKRE 329
++ TL +RE ++RL +GLD + T ED+ K ++RER+RQ+ AL KL+H +R ++
Sbjct: 304 LD-TLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQ 362
Query: 330 MEAML 334
++ +
Sbjct: 363 LKDFM 367
>I5BMJ8_STRAG (tr|I5BMJ8) RNA polymerase sigma factor OS=Streptococcus agalactiae
ZQ0910 GN=WY5_03480 PE=3 SV=1
Length = 369
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 157/245 (64%), Gaps = 10/245 (4%)
Query: 93 LARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYW 152
+A++RLA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGFK STY W
Sbjct: 130 MAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATW 189
Query: 153 WIRQGVSRALVENSRTLRLPTHLHERLS-LIRTAKFRLEERGITPTIDRIAKSLNMSQKK 211
WIRQ ++RA+ + +RT+R+P H+ E ++ L+R + L+E G PT ++IA+ ++M+ K
Sbjct: 190 WIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDK 249
Query: 212 VRNATEAISKVFSLDREAFPSLNGLPGDTH-HCYIADNRLENIPWHGVDEWTLKDEVNKL 270
VR + + SL+ G D+H +I D +EN P L+++++++
Sbjct: 250 VREILKIAQEPVSLETPI-----GEEDDSHLGDFIEDEVIEN-PVDYTTRVVLREQLDEV 303
Query: 271 INVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKHAARKRE 329
++ TL +RE ++RL +GLD + T ED+ K ++RER+RQ+ AL KL+H +R ++
Sbjct: 304 LD-TLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQ 362
Query: 330 MEAML 334
++ +
Sbjct: 363 LKDFM 367
>F8Y1T2_STRAG (tr|F8Y1T2) RNA polymerase sigma factor OS=Streptococcus agalactiae
FSL S3-026 GN=FSLSAGS3026_08265 PE=3 SV=1
Length = 369
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 157/245 (64%), Gaps = 10/245 (4%)
Query: 93 LARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYW 152
+A++RLA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGFK STY W
Sbjct: 130 MAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATW 189
Query: 153 WIRQGVSRALVENSRTLRLPTHLHERLS-LIRTAKFRLEERGITPTIDRIAKSLNMSQKK 211
WIRQ ++RA+ + +RT+R+P H+ E ++ L+R + L+E G PT ++IA+ ++M+ K
Sbjct: 190 WIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDK 249
Query: 212 VRNATEAISKVFSLDREAFPSLNGLPGDTH-HCYIADNRLENIPWHGVDEWTLKDEVNKL 270
VR + + SL+ G D+H +I D +EN P L+++++++
Sbjct: 250 VREILKIAQEPVSLETPI-----GEEDDSHLGDFIEDEVIEN-PVDYTTRVVLREQLDEV 303
Query: 271 INVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKHAARKRE 329
++ TL +RE ++RL +GLD + T ED+ K ++RER+RQ+ AL KL+H +R ++
Sbjct: 304 LD-TLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQ 362
Query: 330 MEAML 334
++ +
Sbjct: 363 LKDFM 367
>K9Z739_CYAAP (tr|K9Z739) RNA polymerase, sigma 70 subunit, RpoD subfamily
OS=Cyanobacterium aponinum (strain PCC 10605)
GN=Cyan10605_2301 PE=4 SV=1
Length = 318
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 106/300 (35%), Positives = 182/300 (60%), Gaps = 9/300 (3%)
Query: 25 YVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRSEL 84
Y+K + LL+ E + L+++I+ ++L++ + LK+KL EPS + A + KIS L
Sbjct: 14 YLKEIGRIPLLTKEEEIVLAKQIQELVALEKKRETLKKKLEREPSKKEWAEAAKISEKNL 73
Query: 85 RAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGF 144
K A+ ++ +N+RLV+SIA++Y ++ DL+Q G IG+ RG+EKFD KG+
Sbjct: 74 DIKISRGEKAKRKMVEANLRLVVSIAKKYLKHNLDLLDLIQEGTIGMQRGVEKFDPKKGY 133
Query: 145 KISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRL-EERGITPTIDRIAK 203
+ STY YWWIRQ ++RA+ E SR +RLP H+ E+L+ IR + +L EE+G TI +++
Sbjct: 134 RFSTYAYWWIRQAITRAIAEKSRAIRLPLHITEKLNKIRQTQRKLSEEKGRPATIAELSE 193
Query: 204 SLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTL 263
+L ++ ++VR+ + SLD + G DT + +++ ++ P D L
Sbjct: 194 ALELTTEQVRDYLGKARQPLSLDLKV-----GDNNDTELGELLEDKGQS-PEDFTDYSCL 247
Query: 264 KDEVNKLINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKLK 322
+ ++ ++++ L ++++++IRL YGLD + LT I + +SRERVRQ+ AL KL+
Sbjct: 248 QFDLRRMMS-DLTQQQQDVIRLRYGLDDGKPLTLSKIGTILNISRERVRQIEREALTKLR 306
>K9YNZ9_CYASC (tr|K9YNZ9) RNA polymerase sigma factor OS=Cyanobacterium stanieri
(strain ATCC 29140 / PCC 7202) GN=Cyast_1868 PE=3 SV=1
Length = 328
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 101/303 (33%), Positives = 184/303 (60%), Gaps = 15/303 (4%)
Query: 25 YVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRSEL 84
Y++ + LLSH + + +++++ +SL K L E L EP+ ++ A + + + +EL
Sbjct: 23 YLQEIGKVPLLSHEQEIVFGKQVQIMMSLYAQKEELAENLDREPTLEEWAQAAEKTPAEL 82
Query: 85 RAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGF 144
+ + A++++ +N+RLV++IA++Y E DL+Q G +GL RG+EKFD +KGF
Sbjct: 83 KKLIHQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGF 142
Query: 145 KISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRLEER-GITPTIDRIAK 203
K STY YWWIRQ ++RA+ + +RT+RLP H+ E+L+ I+ + L ++ G +P IA
Sbjct: 143 KFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKTQRELSQKLGRSPNQSEIAN 202
Query: 204 SLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLEN---IPWHGVDE 260
+L++ ++R + FS+ R+ SL+ GD +++ LE+ P + +
Sbjct: 203 ALDLEPSQIR-------EYFSIARQPI-SLDVKVGDNQDTELSE-LLEDEGLSPDKYITQ 253
Query: 261 WTLKDEVNKLINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALE 319
++ +++KL++ L +++E++RL +GLD + L+ I +R+G+SRERVRQ+ AL
Sbjct: 254 ELMRQDLHKLLD-ELTTQQQEVVRLRFGLDDGKELSLAKIGQRMGISRERVRQLEQQALA 312
Query: 320 KLK 322
L+
Sbjct: 313 HLR 315
>Q3B0L4_SYNS9 (tr|Q3B0L4) RNA polymerase sigma factor OS=Synechococcus sp.
(strain CC9902) GN=Syncc9902_0139 PE=3 SV=1
Length = 332
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 97/304 (31%), Positives = 183/304 (60%), Gaps = 12/304 (3%)
Query: 23 KGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRS 82
+ Y++ + LL+H + + L +++ + ++ ++ L+ + G +P+ DQ+A + ++S
Sbjct: 26 RSYLRDIGRVPLLTHEQEITLGRQVQQLMEIETLEAELESRDGAKPARDQLAKAAELSTV 85
Query: 83 ELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSK 142
+L+ K + A+ER+ +N+RLV+S+A++Y E+ DL+Q G IGL+RG+EKFD ++
Sbjct: 86 QLKRKLQQGHRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTR 145
Query: 143 GFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRL-EERGITPTIDRI 201
G+K STY YWWIRQG++RA+ E SRT+RLP H+ E L+ ++ + L +E G TPT+ +
Sbjct: 146 GYKFSTYAYWWIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPTVTEL 205
Query: 202 AKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEW 261
A+ +++ + +V++ + SL+ + +G + DN L P V+E
Sbjct: 206 AQFVDLPEDEVKDLMCRARQPVSLEMKVG---DGDDTELLELLSGDNEL---PSDQVEED 259
Query: 262 TLKDEVNKLINVTLVEREREIIRLYYGLDKE-CLTWEDISKRIGLSRERVRQV---GLVA 317
LK ++ L+ L + +++R+ +G+D E ++ I + +G+SR+RVR + GL
Sbjct: 260 CLKGDLRSLLG-QLPHLQEQVLRMRFGMDGEDPMSLTGIGRILGMSRDRVRNLERDGLAG 318
Query: 318 LEKL 321
L ++
Sbjct: 319 LRRV 322
>K9QH57_9NOSO (tr|K9QH57) RNA polymerase sigma factor OS=Nostoc sp. PCC 7107
GN=Nos7107_3946 PE=3 SV=1
Length = 377
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 103/308 (33%), Positives = 179/308 (58%), Gaps = 9/308 (2%)
Query: 24 GYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRSE 83
+ K + LL E V+L+ +++ + E ++ L+E+LG +P+ Q+AA L ++ +
Sbjct: 69 AFFKEMARYPLLKADEEVELARRVRFLEEVREIQAALQEQLGQQPTKVQVAAQLDLTEKQ 128
Query: 84 LRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKG 143
L ++ + +A+ ++ SN+RLV+SIA+RY N G DL+Q G +GL R EKFD KG
Sbjct: 129 LESRLYQGRVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKG 188
Query: 144 FKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRLEER-GITPTIDRIA 202
+K STY YWWIRQ ++RA+ ++RT+RLP H+ E+L+ ++ A+ L+++ G P+ +A
Sbjct: 189 YKFSTYAYWWIRQAITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQKLGHNPSEAEMA 248
Query: 203 KSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWT 262
L M+ +++R + + SL+ G DT + ++ P ++E
Sbjct: 249 AFLEMTVQQLRQLQQLRRQALSLNHRV-----GKEEDTELMDLLEDEDNLSPEAKMNENM 303
Query: 263 LKDEVNKLINVTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKL 321
++ E+ +++ L RE+++I L YGL E T E++ LSRERVRQ+ A+ KL
Sbjct: 304 MRQEIWEVLGDVLTPREKDVISLRYGLTTSEPCTLEEVGNMFNLSRERVRQIQSKAMRKL 363
Query: 322 K--HAARK 327
+ H A++
Sbjct: 364 RRPHIAKR 371
>Q062S3_9SYNE (tr|Q062S3) RNA polymerase sigma factor OS=Synechococcus sp. BL107
GN=BL107_06099 PE=3 SV=1
Length = 332
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 97/304 (31%), Positives = 183/304 (60%), Gaps = 12/304 (3%)
Query: 23 KGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRS 82
+ Y++ + LL+H + + L +++ + ++ ++ L+ + G +P+ DQ+A + ++S
Sbjct: 26 RSYLRDIGRVPLLTHEQEITLGRQVQQLMEIETLEAELESRDGAKPARDQLAKAAELSTV 85
Query: 83 ELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSK 142
+L+ K + A+ER+ +N+RLV+S+A++Y E+ DL+Q G IGL+RG+EKFD ++
Sbjct: 86 QLKRKLQQGHRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTR 145
Query: 143 GFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRL-EERGITPTIDRI 201
G+K STY YWWIRQG++RA+ E SRT+RLP H+ E L+ ++ + L +E G TPT+ +
Sbjct: 146 GYKFSTYAYWWIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPTVTEL 205
Query: 202 AKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEW 261
A+ +++ + +V++ + SL+ + +G + DN L P V+E
Sbjct: 206 AQFVDLPEDEVKDLMCRARQPVSLEMKVG---DGDDTELLELLSGDNEL---PSDQVEED 259
Query: 262 TLKDEVNKLINVTLVEREREIIRLYYGLDKE-CLTWEDISKRIGLSRERVRQV---GLVA 317
LK ++ L+ L + +++R+ +G+D E ++ I + +G+SR+RVR + GL
Sbjct: 260 CLKGDLRSLLG-QLPHLQEQVLRMRFGMDGEDPMSLTGIGRILGMSRDRVRNLERDGLAG 318
Query: 318 LEKL 321
L ++
Sbjct: 319 LRRV 322
>E7S3E6_STRAG (tr|E7S3E6) RNA polymerase sigma factor OS=Streptococcus agalactiae
ATCC 13813 GN=rpoD PE=3 SV=1
Length = 380
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 157/245 (64%), Gaps = 10/245 (4%)
Query: 93 LARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYW 152
+A++RLA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGFK STY W
Sbjct: 141 MAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATW 200
Query: 153 WIRQGVSRALVENSRTLRLPTHLHERLS-LIRTAKFRLEERGITPTIDRIAKSLNMSQKK 211
WIRQ ++RA+ + +RT+R+P H+ E ++ L+R + L+E G PT ++IA+ ++M+ K
Sbjct: 201 WIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDK 260
Query: 212 VRNATEAISKVFSLDREAFPSLNGLPGDTH-HCYIADNRLENIPWHGVDEWTLKDEVNKL 270
VR + + SL+ G D+H +I D +EN P L+++++++
Sbjct: 261 VREILKIAQEPVSLETPI-----GEEDDSHLGDFIEDEVIEN-PVDYTTRVVLREQLDEV 314
Query: 271 INVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKHAARKRE 329
++ TL +RE ++RL +GLD + T ED+ K ++RER+RQ+ AL KL+H +R ++
Sbjct: 315 LD-TLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQ 373
Query: 330 MEAML 334
++ +
Sbjct: 374 LKDFM 378
>F5UG89_9CYAN (tr|F5UG89) RNA polymerase sigma factor OS=Microcoleus vaginatus
FGP-2 GN=MicvaDRAFT_3216 PE=3 SV=1
Length = 388
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 108/304 (35%), Positives = 175/304 (57%), Gaps = 9/304 (2%)
Query: 25 YVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRSEL 84
Y++ + +LL E ++L+ KI L L+ + +L E+ EP D + A ++ ++
Sbjct: 83 YLQEIGRIRLLRADEEIELARKIADLLELERVREQLLEEYNREPKDSEWANAVDMALPAF 142
Query: 85 RAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGF 144
R + A+E++ SN+RLV+SIA++Y N G DL+Q G +GL+R EKFD KG+
Sbjct: 143 RHRLHVGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGY 202
Query: 145 KISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLI-RTAKFRLEERGITPTIDRIAK 203
K STY WWIRQ ++RA+ + SRT+RLP HL+E +S I +T K +E G PT + IA
Sbjct: 203 KFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIAT 262
Query: 204 SLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTL 263
+ M+ +K+R ++ SL+ + GD +I + P V + L
Sbjct: 263 RMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD----FIESD--GETPEDQVSKNLL 316
Query: 264 KDEVNKLINVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLK 322
++++ +++ TL RER+++RL YGLD + T E+I + ++RER+RQ+ AL KL+
Sbjct: 317 REDLESVLD-TLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 375
Query: 323 HAAR 326
H R
Sbjct: 376 HPNR 379
>K9TM07_9CYAN (tr|K9TM07) RNA polymerase sigma factor OS=Oscillatoria acuminata
PCC 6304 GN=Oscil6304_3894 PE=3 SV=1
Length = 387
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 109/304 (35%), Positives = 176/304 (57%), Gaps = 9/304 (2%)
Query: 25 YVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRSEL 84
Y++ + +LL E ++L+ KI L L+ + L + L EP D + A ++K+S +
Sbjct: 82 YLQEIGRIRLLRADEEIELARKIADLLELERIREHLCDHLHREPYDAEWADAVKMSVGQF 141
Query: 85 RAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGF 144
R + A++++ SN+RLV+SIA++Y N G DL+Q G +GL+R EKFD KG+
Sbjct: 142 RHRLHCGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGY 201
Query: 145 KISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLI-RTAKFRLEERGITPTIDRIAK 203
K STY WWIRQ ++RA+ + SRT+RLP HL+E +S I +T K +E G PT + IA
Sbjct: 202 KFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIAT 261
Query: 204 SLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTL 263
+ M+ +K+R ++ SL+ + GD +I + P V + L
Sbjct: 262 RMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD----FIESD--GETPEDQVSKNLL 315
Query: 264 KDEVNKLINVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLK 322
++++ +++ TL RER+++RL YGLD + T E+I + ++RER+RQ+ AL KL+
Sbjct: 316 REDLESVLD-TLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 374
Query: 323 HAAR 326
H R
Sbjct: 375 HPNR 378
>K7W742_9NOST (tr|K7W742) RNA polymerase sigma factor OS=Anabaena sp. 90 GN=sigE
PE=3 SV=1
Length = 389
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 102/308 (33%), Positives = 179/308 (58%), Gaps = 9/308 (2%)
Query: 24 GYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRSE 83
+ K + LL E V+L+ +++ + E ++ L+ +LG +PS Q+A+ L+I+ +
Sbjct: 81 AFFKEMARYPLLKPDEEVELARRVRFLEEVKELQAALELQLGAQPSKVQVASQLEITEKQ 140
Query: 84 LRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKG 143
L ++ + +A+ ++ SN+RLV+SIA+RY N G DL+Q G +GL R EKFD KG
Sbjct: 141 LESRLYQGRVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRASEKFDPDKG 200
Query: 144 FKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRLEER-GITPTIDRIA 202
+K STY YWWIRQ ++RA+ ++RT+RLP H+ E+L+ ++ A+ L+++ PT +A
Sbjct: 201 YKFSTYAYWWIRQAITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQKLARNPTEAEMA 260
Query: 203 KSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWT 262
++L ++ ++R + + SL+ G DT + ++ P ++E
Sbjct: 261 EALEITVHQLRQLQQLRRQALSLNHRV-----GKEEDTELMDLLEDEDNQSPEAKMNENM 315
Query: 263 LKDEVNKLINVTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKL 321
++ E+ +++ L RE+++I L YGL E T E++ LSRERVRQ+ A+ KL
Sbjct: 316 MRQEIWEVLGDVLTPREKDVISLRYGLTSSEPCTLEEVGNMFNLSRERVRQIQSKAMRKL 375
Query: 322 K--HAARK 327
+ H A++
Sbjct: 376 RRPHIAKR 383
>B1X5Q2_PAUCH (tr|B1X5Q2) RNA polymerase sigma factor OS=Paulinella chromatophora
GN=rpoDI PE=4 SV=1
Length = 460
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 109/304 (35%), Positives = 179/304 (58%), Gaps = 9/304 (2%)
Query: 25 YVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRSEL 84
Y++ + +LL E ++L+ KI L L+E + + + G P + + AA +++S +
Sbjct: 155 YLQEIGRIRLLRPDEEIELARKISDLLYLEELAGQFEGRKGYYPDNKEWAALVEMSLIKF 214
Query: 85 RAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGF 144
R + + A+ ++ SN+RLV+SIA++Y N G DL+Q G +GL+R EKFD KG+
Sbjct: 215 RRRLMLGRRAKAKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGY 274
Query: 145 KISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLI-RTAKFRLEERGITPTIDRIAK 203
K STY WWIRQ ++RA+ + SRT+RLP HL+E +S I +T K +E G PT + IA+
Sbjct: 275 KFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAE 334
Query: 204 SLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTL 263
S+ M+ +K+R ++ SL+ + G D+ + +EN P V + L
Sbjct: 335 SMEMTIEKLRFIAKSAQLPISLE-----TPIGKEEDSRLGDFIEADIEN-PEQDVAKNLL 388
Query: 264 KDEVNKLINVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLK 322
++++ ++ TL RER+++RL YGLD + T E+I + ++RER+RQ+ AL KL+
Sbjct: 389 REDLEGVL-ATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLR 447
Query: 323 HAAR 326
H R
Sbjct: 448 HPNR 451
>K9P2V4_CYAGP (tr|K9P2V4) RNA polymerase sigma factor OS=Cyanobium gracile
(strain ATCC 27147 / PCC 6307) GN=Cyagr_0083 PE=3 SV=1
Length = 432
Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 109/304 (35%), Positives = 176/304 (57%), Gaps = 9/304 (2%)
Query: 25 YVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRSEL 84
Y++ + +LL E ++L+ KI L L+E + + G P + AA + +
Sbjct: 127 YLQEIGRIRLLRPDEEIELARKIADLLELEEKAAEFEADKGHFPDTKEWAAIFDMPLIKF 186
Query: 85 RAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGF 144
R + + A+E++ +SN+RLV+SIA++Y N G DL+Q G +GL+R EKFD KG+
Sbjct: 187 RRRLMLGRRAKEKMVLSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGY 246
Query: 145 KISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLI-RTAKFRLEERGITPTIDRIAK 203
K STY WWIRQ ++RA+ + SRT+RLP HL+E +S I +T K +E G PT + IA+
Sbjct: 247 KFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKTLSQEFGRKPTEEEIAE 306
Query: 204 SLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTL 263
S+ M+ +K+R ++ SL+ + G D+ + +EN P V + L
Sbjct: 307 SMEMTIEKLRFIAKSAQLPISLE-----TPIGKEEDSRLGDFIEADIEN-PEQDVAKNLL 360
Query: 264 KDEVNKLINVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLK 322
++++ ++ TL RER+++RL YGLD + T E+I + ++RER+RQ+ AL KL+
Sbjct: 361 REDLEGVL-ATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLR 419
Query: 323 HAAR 326
H R
Sbjct: 420 HPNR 423
>D4ZXY7_SPIPL (tr|D4ZXY7) Group 2 RNA polymerase sigma factor SigD OS=Arthrospira
platensis NIES-39 GN=sigD PE=4 SV=1
Length = 331
Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 98/304 (32%), Positives = 176/304 (57%), Gaps = 13/304 (4%)
Query: 23 KGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRS 82
+ Y++ + LL+H + + ++++ L E ++ L ++L EP++ Q A + +S +
Sbjct: 25 RAYLREIGRVPLLTHEQEIVYGKQVQQATLLQEKRNELAKQLAYEPTEAQWAELVNLSVA 84
Query: 83 ELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSK 142
+L+ + LA+ ++ +N+RLV+S+A++Y ++ DL+Q G IG+ RG+EKFD +K
Sbjct: 85 QLQHILHQGQLAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTK 144
Query: 143 GFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRLEER-GITPTIDRI 201
G++ STY YWWIRQ ++RA+ E RT+RLP H+ E+L+ I+ A+ +L ++ G T++ +
Sbjct: 145 GYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLAQQLGRAATMNEL 204
Query: 202 AKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIAD--NRLENIPWHGVD 259
A L+++ K++R E SLD GD + D N P
Sbjct: 205 AAELDLTPKQIREYLEKSRLPLSLDLRV--------GDNQDTELVDLLEDTTNSPEQFAL 256
Query: 260 EWTLKDEVNKLINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVAL 318
+L+ ++ L+ L +++R+++ L +GLD + LT I R+ +SRERVRQ+ AL
Sbjct: 257 NSSLRSDLESLM-TDLTDQQRQVLALRFGLDDGQTLTLAKIGDRLNISRERVRQIEREAL 315
Query: 319 EKLK 322
KL+
Sbjct: 316 TKLR 319
>D7E0K7_NOSA0 (tr|D7E0K7) RNA polymerase sigma factor OS=Nostoc azollae (strain
0708) GN=Aazo_2817 PE=3 SV=1
Length = 390
Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 108/304 (35%), Positives = 176/304 (57%), Gaps = 9/304 (2%)
Query: 25 YVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRSEL 84
Y++ + +LL E ++L+ KI L L+ + RL E+L EP + A ++++
Sbjct: 85 YLQEIGRIRLLRADEEIELARKIADLLELERVRDRLYEQLEREPQFKEWAEAVQLPLPTF 144
Query: 85 RAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGF 144
R + A++++ SN+RLV+SIA++Y N G DL+Q G +GL+R EKFD KG+
Sbjct: 145 RYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGY 204
Query: 145 KISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLI-RTAKFRLEERGITPTIDRIAK 203
K STY WWIRQ ++RA+ + SRT+RLP HL+E +S I +T K +E G PT + IA
Sbjct: 205 KFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIAT 264
Query: 204 SLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTL 263
+ M+ +K+R ++ SL+ + GD +I + P V + L
Sbjct: 265 RMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD----FIESD--GETPEDQVSKNLL 318
Query: 264 KDEVNKLINVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLK 322
++++ K+++ +L RER+++RL YGLD + T E+I + ++RER+RQ+ AL KL+
Sbjct: 319 REDLEKVLD-SLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 377
Query: 323 HAAR 326
H R
Sbjct: 378 HPNR 381
>K9U2G0_9CYAN (tr|K9U2G0) RNA polymerase, sigma 70 subunit, RpoD subfamily
OS=Chroococcidiopsis thermalis PCC 7203 GN=Chro_3338
PE=4 SV=1
Length = 318
Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 107/318 (33%), Positives = 184/318 (57%), Gaps = 19/318 (5%)
Query: 23 KGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRS 82
+ Y++ + LL+H + + ++++ +L + L KLG EP+ ++ + + +I ++
Sbjct: 12 RTYLREIGRVPLLTHEQEIVYGKQVQRLSTLYALQEELVAKLGREPTLEEWSEAARIDKT 71
Query: 83 ELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSK 142
L E +A+ R+ +N+RLV+S+A++Y ++ DL+Q G IG+ RG+EKFD +K
Sbjct: 72 ALSTAIAEGEIAKRRMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTK 131
Query: 143 GFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRLEER-GITPTIDRI 201
G++ STY YWWIRQ ++RA+ E RT+RLP H+ E+L+ I+ A+ +L + G P+I +
Sbjct: 132 GYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQNLGRAPSIVEL 191
Query: 202 AKSLNMSQKKVRNATEAISKVFSLDREAFP-SLNGLPGDTHHCYIADNRLENI---PWHG 257
A +L ++ K+VR L+R P SL+ GD + + LE+ P
Sbjct: 192 ATALELTPKQVRE---------YLERARLPLSLDLRVGDNQDTELGE-LLEDTSLSPEEF 241
Query: 258 VDEWTLKDEVNKLINVTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLV 316
V E L ++ KL+ L ++RE++ L +GL D + +T I R+ +SRERVRQ+
Sbjct: 242 VTESCLSTDIEKLM-ADLTPQQREVLSLRFGLADGQAMTLAKIGDRLNISRERVRQIERE 300
Query: 317 ALEKLKHAARKREMEAML 334
AL KL+ RK +++ L
Sbjct: 301 ALTKLRK--RKADLDQYL 316
>B4WPM0_9SYNE (tr|B4WPM0) RNA polymerase sigma factor OS=Synechococcus sp. PCC
7335 GN=S7335_5088 PE=3 SV=1
Length = 404
Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 106/304 (34%), Positives = 175/304 (57%), Gaps = 9/304 (2%)
Query: 25 YVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRSEL 84
Y++ + +LL E ++L+ KI L L+ + + ++L EP+D A ++ +
Sbjct: 99 YLQEIGRIRLLRAEEEIELARKIADLLELERIRDEIDDQLDDEPTDADWANAVDMPLPAF 158
Query: 85 RAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGF 144
R + + A++++ SN+RLV+SIA++Y N G DL+Q G +GL+R EKFD KG+
Sbjct: 159 RRRLYQGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGY 218
Query: 145 KISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLI-RTAKFRLEERGITPTIDRIAK 203
K STY WWIRQ ++RA+ + SRT+RLP HL+E +S I +T K +E G PT + IA
Sbjct: 219 KFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQELGRKPTEEEIAT 278
Query: 204 SLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTL 263
+ M+ +K+R ++ SL+ + GD +I + P V + L
Sbjct: 279 RMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD----FIESD--GETPEDEVSKSLL 332
Query: 264 KDEVNKLINVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLK 322
++++ +++ TL RER+++RL YGLD + T E+I + ++RER+RQ+ AL KL+
Sbjct: 333 REDLESVLS-TLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 391
Query: 323 HAAR 326
H R
Sbjct: 392 HPNR 395
>B5ILG7_9CHRO (tr|B5ILG7) RNA polymerase sigma factor OS=Cyanobium sp. PCC 7001
GN=rpoD_2 PE=3 SV=1
Length = 503
Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 109/304 (35%), Positives = 178/304 (58%), Gaps = 9/304 (2%)
Query: 25 YVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRSEL 84
Y++ + +LL E ++L+ KI L L+E ++ + G P + + AA + + +
Sbjct: 198 YLQEIGRIRLLRPDEEIELARKIADLLQLEELAAQFEADHGHYPDNKEWAALVDMPLIKF 257
Query: 85 RAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGF 144
R + + A+E++ SN+RLV+SIA++Y N G DL+Q G +GL+R EKFD KG+
Sbjct: 258 RRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGY 317
Query: 145 KISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLI-RTAKFRLEERGITPTIDRIAK 203
K STY WWIRQ ++RA+ + SRT+RLP HL+E +S I +T K +E G PT + IA+
Sbjct: 318 KFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKTLSQEFGRKPTEEEIAE 377
Query: 204 SLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTL 263
S+ M+ +K+R ++ SL+ + G D+ + +EN P V + L
Sbjct: 378 SMEMTIEKLRFIAKSAQLPISLE-----TPIGKEEDSRLGDFIEADIEN-PEQDVAKNLL 431
Query: 264 KDEVNKLINVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLK 322
++++ ++ TL RER+++RL YGLD + T E+I + ++RER+RQ+ AL KL+
Sbjct: 432 REDLEGVL-ATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLR 490
Query: 323 HAAR 326
H R
Sbjct: 491 HPNR 494
>K8GCA2_9CYAN (tr|K8GCA2) RNA polymerase sigma factor, cyanobacterial RpoD-like
family OS=Oscillatoriales cyanobacterium JSC-12
GN=OsccyDRAFT_4384 PE=4 SV=1
Length = 318
Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 101/305 (33%), Positives = 178/305 (58%), Gaps = 15/305 (4%)
Query: 23 KGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRS 82
+ Y++ + LL+H + V ++++ L++ K L +LG PS ++ A + ++S +
Sbjct: 12 RTYLREIGRVPLLTHEQEVVFGKQVQRLTLLNDTKDGLANRLGRTPSFEEWAQASQLSSA 71
Query: 83 ELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSK 142
EL+ E A+ ++ +N+RLV+S+A++Y ++ DL+Q G IG+ RG+EKFD +K
Sbjct: 72 ELKQAIAEGEYAKRKMVEANLRLVVSVAKKYTKRNVDLLDLIQEGTIGMQRGVEKFDPTK 131
Query: 143 GFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRLEER-GITPTIDRI 201
G++ STY YWWIRQ ++RA+ E RT+RLP H+ E+L+ I+ A+ +L +R G T +
Sbjct: 132 GYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQRLGRAATAAEL 191
Query: 202 AKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENI---PWHGV 258
A+ L+++ K+VR+ E + SLD GD + + LE+ P
Sbjct: 192 AQELDLTPKQVRDYLEQARQPLSLDLRV--------GDNQDTELGE-LLEDTGTSPEEFA 242
Query: 259 DEWTLKDEVNKLINVTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVA 317
+ +L+ ++ L+ L ++R+++ L +GL D + LT I ++ +SRERVRQ+ A
Sbjct: 243 LQSSLRTDLESLM-ADLTPQQRQVLTLRFGLEDGQALTLAKIGDQLNISRERVRQIEREA 301
Query: 318 LEKLK 322
L KL+
Sbjct: 302 LSKLR 306
>Q5LYT0_STRT1 (tr|Q5LYT0) RNA polymerase sigma factor OS=Streptococcus
thermophilus (strain CNRZ 1066) GN=rpoD PE=3 SV=1
Length = 369
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 92/244 (37%), Positives = 156/244 (63%), Gaps = 10/244 (4%)
Query: 94 ARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 153
A++RLA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGFK STY WW
Sbjct: 131 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWW 190
Query: 154 IRQGVSRALVENSRTLRLPTHLHERLS-LIRTAKFRLEERGITPTIDRIAKSLNMSQKKV 212
IRQ ++RA+ + +RT+R+P H+ E ++ L+R + L+E G PT ++IA+ ++M+ KV
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKV 250
Query: 213 RNATEAISKVFSLDREAFPSLNGLPGDTH-HCYIADNRLENIPWHGVDEWTLKDEVNKLI 271
R + + SL+ G D+H +I D +EN P L++++++++
Sbjct: 251 REILKIAQEPVSLETPI-----GEEDDSHLGDFIEDEVIEN-PVDYTTRVVLREQLDEVL 304
Query: 272 NVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKHAARKREM 330
+ TL +RE ++RL +GLD + T ED+ K ++RER+RQ+ AL KL+H +R +++
Sbjct: 305 D-TLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQL 363
Query: 331 EAML 334
+ +
Sbjct: 364 KDFI 367
>Q03JL2_STRTD (tr|Q03JL2) RNA polymerase sigma factor OS=Streptococcus
thermophilus (strain ATCC BAA-491 / LMD-9) GN=STER_1448
PE=3 SV=1
Length = 369
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 92/244 (37%), Positives = 156/244 (63%), Gaps = 10/244 (4%)
Query: 94 ARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 153
A++RLA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGFK STY WW
Sbjct: 131 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWW 190
Query: 154 IRQGVSRALVENSRTLRLPTHLHERLS-LIRTAKFRLEERGITPTIDRIAKSLNMSQKKV 212
IRQ ++RA+ + +RT+R+P H+ E ++ L+R + L+E G PT ++IA+ ++M+ KV
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKV 250
Query: 213 RNATEAISKVFSLDREAFPSLNGLPGDTH-HCYIADNRLENIPWHGVDEWTLKDEVNKLI 271
R + + SL+ G D+H +I D +EN P L++++++++
Sbjct: 251 REILKIAQEPVSLETPI-----GEEDDSHLGDFIEDEVIEN-PVDYTTRVVLREQLDEVL 304
Query: 272 NVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKHAARKREM 330
+ TL +RE ++RL +GLD + T ED+ K ++RER+RQ+ AL KL+H +R +++
Sbjct: 305 D-TLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQL 363
Query: 331 EAML 334
+ +
Sbjct: 364 KDFI 367
>E4SQV0_STRTN (tr|E4SQV0) RNA polymerase sigma factor OS=Streptococcus
thermophilus (strain ND03) GN=STND_1419 PE=3 SV=1
Length = 369
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 92/244 (37%), Positives = 156/244 (63%), Gaps = 10/244 (4%)
Query: 94 ARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 153
A++RLA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGFK STY WW
Sbjct: 131 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWW 190
Query: 154 IRQGVSRALVENSRTLRLPTHLHERLS-LIRTAKFRLEERGITPTIDRIAKSLNMSQKKV 212
IRQ ++RA+ + +RT+R+P H+ E ++ L+R + L+E G PT ++IA+ ++M+ KV
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKV 250
Query: 213 RNATEAISKVFSLDREAFPSLNGLPGDTH-HCYIADNRLENIPWHGVDEWTLKDEVNKLI 271
R + + SL+ G D+H +I D +EN P L++++++++
Sbjct: 251 REILKIAQEPVSLETPI-----GEEDDSHLGDFIEDEVIEN-PVDYTTRVVLREQLDEVL 304
Query: 272 NVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKHAARKREM 330
+ TL +RE ++RL +GLD + T ED+ K ++RER+RQ+ AL KL+H +R +++
Sbjct: 305 D-TLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQL 363
Query: 331 EAML 334
+ +
Sbjct: 364 KDFI 367
>I6Q288_STRTR (tr|I6Q288) RNA polymerase sigma factor OS=Streptococcus
thermophilus MN-ZLW-002 GN=Y1U_C1382 PE=3 SV=1
Length = 369
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 92/244 (37%), Positives = 156/244 (63%), Gaps = 10/244 (4%)
Query: 94 ARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 153
A++RLA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGFK STY WW
Sbjct: 131 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWW 190
Query: 154 IRQGVSRALVENSRTLRLPTHLHERLS-LIRTAKFRLEERGITPTIDRIAKSLNMSQKKV 212
IRQ ++RA+ + +RT+R+P H+ E ++ L+R + L+E G PT ++IA+ ++M+ KV
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKV 250
Query: 213 RNATEAISKVFSLDREAFPSLNGLPGDTH-HCYIADNRLENIPWHGVDEWTLKDEVNKLI 271
R + + SL+ G D+H +I D +EN P L++++++++
Sbjct: 251 REILKIAQEPVSLETPI-----GEEDDSHLGDFIEDEVIEN-PVDYTTRVVLREQLDEVL 304
Query: 272 NVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKHAARKREM 330
+ TL +RE ++RL +GLD + T ED+ K ++RER+RQ+ AL KL+H +R +++
Sbjct: 305 D-TLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQL 363
Query: 331 EAML 334
+ +
Sbjct: 364 KDFI 367
>F8LYP0_STRTR (tr|F8LYP0) RNA polymerase sigma factor OS=Streptococcus
thermophilus JIM 8232 GN=lysS-1 PE=3 SV=1
Length = 369
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 92/244 (37%), Positives = 156/244 (63%), Gaps = 10/244 (4%)
Query: 94 ARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 153
A++RLA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGFK STY WW
Sbjct: 131 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWW 190
Query: 154 IRQGVSRALVENSRTLRLPTHLHERLS-LIRTAKFRLEERGITPTIDRIAKSLNMSQKKV 212
IRQ ++RA+ + +RT+R+P H+ E ++ L+R + L+E G PT ++IA+ ++M+ KV
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKV 250
Query: 213 RNATEAISKVFSLDREAFPSLNGLPGDTH-HCYIADNRLENIPWHGVDEWTLKDEVNKLI 271
R + + SL+ G D+H +I D +EN P L++++++++
Sbjct: 251 REILKIAQEPVSLETPI-----GEEDDSHLGDFIEDEVIEN-PVDYTTRVVLREQLDEVL 304
Query: 272 NVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKHAARKREM 330
+ TL +RE ++RL +GLD + T ED+ K ++RER+RQ+ AL KL+H +R +++
Sbjct: 305 D-TLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQL 363
Query: 331 EAML 334
+ +
Sbjct: 364 KDFI 367
>H6PA52_STRIC (tr|H6PA52) RNA polymerase sigma factor OS=Streptococcus
infantarius (strain CJ18) GN=sigA PE=3 SV=1
Length = 369
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 92/240 (38%), Positives = 155/240 (64%), Gaps = 10/240 (4%)
Query: 94 ARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 153
A++RLA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGFK STY WW
Sbjct: 131 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWW 190
Query: 154 IRQGVSRALVENSRTLRLPTHLHERLS-LIRTAKFRLEERGITPTIDRIAKSLNMSQKKV 212
IRQ ++RA+ + +RT+R+P H+ E ++ L+R + L+E G PT ++IA+ ++M+ KV
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKV 250
Query: 213 RNATEAISKVFSLDREAFPSLNGLPGDTH-HCYIADNRLENIPWHGVDEWTLKDEVNKLI 271
R + + SL+ + G D+H +I D +EN P L++++++++
Sbjct: 251 REILKIAQEPVSLE-----TPIGEEDDSHLGDFIEDEVIEN-PVDYTTRVVLREQLDEVL 304
Query: 272 NVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKHAARKREM 330
+ TL +RE ++RL +GLD + T ED+ K ++RER+RQ+ AL KL+H +R +++
Sbjct: 305 D-TLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQL 363
>K9ZHC6_ANACC (tr|K9ZHC6) RNA polymerase sigma factor OS=Anabaena cylindrica
(strain ATCC 27899 / PCC 7122) GN=Anacy_2718 PE=3 SV=1
Length = 392
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 107/304 (35%), Positives = 177/304 (58%), Gaps = 9/304 (2%)
Query: 25 YVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRSEL 84
Y++ + +LL E ++L+ KI L L+ + RL+++L EP + A ++++
Sbjct: 87 YLQEIGRIRLLRADEEIELARKIADLLELERVRDRLQDQLEREPQFKEWAEAVELPLPTF 146
Query: 85 RAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGF 144
R + A++++ SN+RLV+SIA++Y N G DL+Q G +GL+R EKFD KG+
Sbjct: 147 RYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGY 206
Query: 145 KISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLI-RTAKFRLEERGITPTIDRIAK 203
K STY WWIRQ ++RA+ + SRT+RLP HL+E +S I +T K +E G PT + IA
Sbjct: 207 KFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIAT 266
Query: 204 SLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTL 263
+ M+ +K+R ++ SL+ + GD +I + P V + L
Sbjct: 267 RMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD----FIESD--GETPEDQVSKNLL 320
Query: 264 KDEVNKLINVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLK 322
++++ K+++ +L RER+++RL YGLD + T E+I + ++RER+RQ+ AL KL+
Sbjct: 321 REDLEKVLD-SLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 379
Query: 323 HAAR 326
H R
Sbjct: 380 HPNR 383
>F5X242_STRPX (tr|F5X242) RNA polymerase sigma factor OS=Streptococcus
pasteurianus (strain ATCC 43144 / JCM 5346 / CDC
1723-81) GN=rpoD PE=3 SV=1
Length = 369
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 92/240 (38%), Positives = 154/240 (64%), Gaps = 10/240 (4%)
Query: 94 ARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 153
A++RLA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGFK STY WW
Sbjct: 131 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWW 190
Query: 154 IRQGVSRALVENSRTLRLPTHLHERLS-LIRTAKFRLEERGITPTIDRIAKSLNMSQKKV 212
IRQ ++RA+ + +RT+R+P H+ E ++ L+R + L+E G PT ++IA+ ++M+ KV
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKV 250
Query: 213 RNATEAISKVFSLDREAFPSLNGLPGDTH-HCYIADNRLENIPWHGVDEWTLKDEVNKLI 271
R + + SL+ G D+H +I D +EN P L++++++++
Sbjct: 251 REILKIAQEPVSLETPI-----GEEDDSHLGDFIEDEVIEN-PVDYTTRVVLREQLDEVL 304
Query: 272 NVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKHAARKREM 330
+ TL +RE ++RL +GLD + T ED+ K ++RER+RQ+ AL KL+H +R +++
Sbjct: 305 D-TLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQL 363
>E0PEP9_STREI (tr|E0PEP9) RNA polymerase sigma factor OS=Streptococcus bovis ATCC
700338 GN=rpoD PE=3 SV=1
Length = 369
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 92/240 (38%), Positives = 154/240 (64%), Gaps = 10/240 (4%)
Query: 94 ARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 153
A++RLA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGFK STY WW
Sbjct: 131 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWW 190
Query: 154 IRQGVSRALVENSRTLRLPTHLHERLS-LIRTAKFRLEERGITPTIDRIAKSLNMSQKKV 212
IRQ ++RA+ + +RT+R+P H+ E ++ L+R + L+E G PT ++IA+ ++M+ KV
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKV 250
Query: 213 RNATEAISKVFSLDREAFPSLNGLPGDTH-HCYIADNRLENIPWHGVDEWTLKDEVNKLI 271
R + + SL+ G D+H +I D +EN P L++++++++
Sbjct: 251 REILKIAQEPVSLETPI-----GEEDDSHLGDFIEDEVIEN-PVDYTTRVVLREQLDEVL 304
Query: 272 NVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKHAARKREM 330
+ TL +RE ++RL +GLD + T ED+ K ++RER+RQ+ AL KL+H +R +++
Sbjct: 305 D-TLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQL 363
>Q8P1I9_STRP8 (tr|Q8P1I9) RNA polymerase sigma factor OS=Streptococcus pyogenes
serotype M18 (strain MGAS8232) GN=rpoD PE=3 SV=1
Length = 369
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 92/241 (38%), Positives = 155/241 (64%), Gaps = 10/241 (4%)
Query: 93 LARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYW 152
+A++RLA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGFK STY W
Sbjct: 130 MAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATW 189
Query: 153 WIRQGVSRALVENSRTLRLPTHLHERLS-LIRTAKFRLEERGITPTIDRIAKSLNMSQKK 211
WIRQ ++RA+ + +RT+R+P H+ E ++ L+R + L+E G PT ++IA+ + M+ K
Sbjct: 190 WIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMEMTPDK 249
Query: 212 VRNATEAISKVFSLDREAFPSLNGLPGDTH-HCYIADNRLENIPWHGVDEWTLKDEVNKL 270
VR + + SL+ + G D+H +I D +EN P L+++++++
Sbjct: 250 VREILKIAQEPVSLE-----TPIGEEDDSHLGDFIEDEVIEN-PVDYTTRVVLREQLDEV 303
Query: 271 INVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKHAARKRE 329
++ TL +RE ++RL +GLD + T ED+ K ++RER+RQ+ AL KL+H +R ++
Sbjct: 304 LD-TLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQ 362
Query: 330 M 330
+
Sbjct: 363 L 363
>L9LJF6_STRTR (tr|L9LJF6) RNA polymerase sigma factor OS=Streptococcus
thermophilus MTCC 5460 GN=IQ5_06852 PE=3 SV=1
Length = 369
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 92/244 (37%), Positives = 156/244 (63%), Gaps = 10/244 (4%)
Query: 94 ARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 153
A++RLA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGFK STY WW
Sbjct: 131 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWW 190
Query: 154 IRQGVSRALVENSRTLRLPTHLHERLS-LIRTAKFRLEERGITPTIDRIAKSLNMSQKKV 212
IRQ ++RA+ + +RT+R+P H+ E ++ L+R + L+E G PT ++IA+ ++M+ KV
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKV 250
Query: 213 RNATEAISKVFSLDREAFPSLNGLPGDTH-HCYIADNRLENIPWHGVDEWTLKDEVNKLI 271
R + + SL+ G D+H +I D +EN P L++++++++
Sbjct: 251 REILKIAQEPVSLETPI-----GEEDDSHLGDFIEDEVIEN-PVDYTTRVVLREQLDEVL 304
Query: 272 NVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKHAARKREM 330
+ TL +RE ++RL +GLD + T ED+ K ++RER+RQ+ AL KL+H +R +++
Sbjct: 305 D-TLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQL 363
Query: 331 EAML 334
+ +
Sbjct: 364 KDFI 367
>L9LGH4_STRTR (tr|L9LGH4) RNA polymerase sigma factor OS=Streptococcus
thermophilus MTCC 5461 GN=IQ7_06920 PE=3 SV=1
Length = 369
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 92/244 (37%), Positives = 156/244 (63%), Gaps = 10/244 (4%)
Query: 94 ARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 153
A++RLA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGFK STY WW
Sbjct: 131 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWW 190
Query: 154 IRQGVSRALVENSRTLRLPTHLHERLS-LIRTAKFRLEERGITPTIDRIAKSLNMSQKKV 212
IRQ ++RA+ + +RT+R+P H+ E ++ L+R + L+E G PT ++IA+ ++M+ KV
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKV 250
Query: 213 RNATEAISKVFSLDREAFPSLNGLPGDTH-HCYIADNRLENIPWHGVDEWTLKDEVNKLI 271
R + + SL+ G D+H +I D +EN P L++++++++
Sbjct: 251 REILKIAQEPVSLETPI-----GEEDDSHLGDFIEDEVIEN-PVDYTTRVVLREQLDEVL 304
Query: 272 NVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKHAARKREM 330
+ TL +RE ++RL +GLD + T ED+ K ++RER+RQ+ AL KL+H +R +++
Sbjct: 305 D-TLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQL 363
Query: 331 EAML 334
+ +
Sbjct: 364 KDFI 367
>Q9A0G8_STRP1 (tr|Q9A0G8) RNA polymerase sigma factor OS=Streptococcus pyogenes
serotype M1 GN=rpoD PE=3 SV=1
Length = 369
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 92/241 (38%), Positives = 155/241 (64%), Gaps = 10/241 (4%)
Query: 93 LARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYW 152
+A++RLA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGFK STY W
Sbjct: 130 MAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATW 189
Query: 153 WIRQGVSRALVENSRTLRLPTHLHERLS-LIRTAKFRLEERGITPTIDRIAKSLNMSQKK 211
WIRQ ++RA+ + +RT+R+P H+ E ++ L+R + L+E G PT ++IA+ + M+ K
Sbjct: 190 WIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMEMTPDK 249
Query: 212 VRNATEAISKVFSLDREAFPSLNGLPGDTH-HCYIADNRLENIPWHGVDEWTLKDEVNKL 270
VR + + SL+ + G D+H +I D +EN P L+++++++
Sbjct: 250 VREILKIAQEPVSLE-----TPIGEEDDSHLGDFIEDEVIEN-PVDYTTRVVLREQLDEV 303
Query: 271 INVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKHAARKRE 329
++ TL +RE ++RL +GLD + T ED+ K ++RER+RQ+ AL KL+H +R ++
Sbjct: 304 LD-TLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQ 362
Query: 330 M 330
+
Sbjct: 363 L 363
>Q5XCW1_STRP6 (tr|Q5XCW1) RNA polymerase sigma factor OS=Streptococcus pyogenes
serotype M6 (strain ATCC BAA-946 / MGAS10394)
GN=M6_Spy0617 PE=3 SV=1
Length = 369
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 92/241 (38%), Positives = 155/241 (64%), Gaps = 10/241 (4%)
Query: 93 LARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYW 152
+A++RLA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGFK STY W
Sbjct: 130 MAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATW 189
Query: 153 WIRQGVSRALVENSRTLRLPTHLHERLS-LIRTAKFRLEERGITPTIDRIAKSLNMSQKK 211
WIRQ ++RA+ + +RT+R+P H+ E ++ L+R + L+E G PT ++IA+ + M+ K
Sbjct: 190 WIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMEMTPDK 249
Query: 212 VRNATEAISKVFSLDREAFPSLNGLPGDTH-HCYIADNRLENIPWHGVDEWTLKDEVNKL 270
VR + + SL+ + G D+H +I D +EN P L+++++++
Sbjct: 250 VREILKIAQEPVSLE-----TPIGEEDDSHLGDFIEDEVIEN-PVDYTTRVVLREQLDEV 303
Query: 271 INVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKHAARKRE 329
++ TL +RE ++RL +GLD + T ED+ K ++RER+RQ+ AL KL+H +R ++
Sbjct: 304 LD-TLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQ 362
Query: 330 M 330
+
Sbjct: 363 L 363
>Q48UB3_STRPM (tr|Q48UB3) RNA polymerase sigma factor OS=Streptococcus pyogenes
serotype M28 (strain MGAS6180) GN=rpoD PE=3 SV=1
Length = 369
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 92/241 (38%), Positives = 155/241 (64%), Gaps = 10/241 (4%)
Query: 93 LARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYW 152
+A++RLA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGFK STY W
Sbjct: 130 MAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATW 189
Query: 153 WIRQGVSRALVENSRTLRLPTHLHERLS-LIRTAKFRLEERGITPTIDRIAKSLNMSQKK 211
WIRQ ++RA+ + +RT+R+P H+ E ++ L+R + L+E G PT ++IA+ + M+ K
Sbjct: 190 WIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMEMTPDK 249
Query: 212 VRNATEAISKVFSLDREAFPSLNGLPGDTH-HCYIADNRLENIPWHGVDEWTLKDEVNKL 270
VR + + SL+ + G D+H +I D +EN P L+++++++
Sbjct: 250 VREILKIAQEPVSLE-----TPIGEEDDSHLGDFIEDEVIEN-PVDYTTRVVLREQLDEV 303
Query: 271 INVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKHAARKRE 329
++ TL +RE ++RL +GLD + T ED+ K ++RER+RQ+ AL KL+H +R ++
Sbjct: 304 LD-TLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQ 362
Query: 330 M 330
+
Sbjct: 363 L 363
>Q1JMH0_STRPC (tr|Q1JMH0) RNA polymerase sigma factor OS=Streptococcus pyogenes
serotype M12 (strain MGAS9429) GN=rpoD PE=3 SV=1
Length = 369
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 92/241 (38%), Positives = 155/241 (64%), Gaps = 10/241 (4%)
Query: 93 LARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYW 152
+A++RLA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGFK STY W
Sbjct: 130 MAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATW 189
Query: 153 WIRQGVSRALVENSRTLRLPTHLHERLS-LIRTAKFRLEERGITPTIDRIAKSLNMSQKK 211
WIRQ ++RA+ + +RT+R+P H+ E ++ L+R + L+E G PT ++IA+ + M+ K
Sbjct: 190 WIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMEMTPDK 249
Query: 212 VRNATEAISKVFSLDREAFPSLNGLPGDTH-HCYIADNRLENIPWHGVDEWTLKDEVNKL 270
VR + + SL+ + G D+H +I D +EN P L+++++++
Sbjct: 250 VREILKIAQEPVSLE-----TPIGEEDDSHLGDFIEDEVIEN-PVDYTTRVVLREQLDEV 303
Query: 271 INVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKHAARKRE 329
++ TL +RE ++RL +GLD + T ED+ K ++RER+RQ+ AL KL+H +R ++
Sbjct: 304 LD-TLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQ 362
Query: 330 M 330
+
Sbjct: 363 L 363
>Q1JHL6_STRPD (tr|Q1JHL6) RNA polymerase sigma factor OS=Streptococcus pyogenes
serotype M2 (strain MGAS10270) GN=rpoD PE=3 SV=1
Length = 369
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 92/241 (38%), Positives = 155/241 (64%), Gaps = 10/241 (4%)
Query: 93 LARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYW 152
+A++RLA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGFK STY W
Sbjct: 130 MAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATW 189
Query: 153 WIRQGVSRALVENSRTLRLPTHLHERLS-LIRTAKFRLEERGITPTIDRIAKSLNMSQKK 211
WIRQ ++RA+ + +RT+R+P H+ E ++ L+R + L+E G PT ++IA+ + M+ K
Sbjct: 190 WIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMEMTPDK 249
Query: 212 VRNATEAISKVFSLDREAFPSLNGLPGDTH-HCYIADNRLENIPWHGVDEWTLKDEVNKL 270
VR + + SL+ + G D+H +I D +EN P L+++++++
Sbjct: 250 VREILKIAQEPVSLE-----TPIGEEDDSHLGDFIEDEVIEN-PVDYTTRVVLREQLDEV 303
Query: 271 INVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKHAARKRE 329
++ TL +RE ++RL +GLD + T ED+ K ++RER+RQ+ AL KL+H +R ++
Sbjct: 304 LD-TLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQ 362
Query: 330 M 330
+
Sbjct: 363 L 363
>Q1JCJ2_STRPB (tr|Q1JCJ2) RNA polymerase sigma factor OS=Streptococcus pyogenes
serotype M12 (strain MGAS2096) GN=rpoD PE=3 SV=1
Length = 369
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 92/241 (38%), Positives = 155/241 (64%), Gaps = 10/241 (4%)
Query: 93 LARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYW 152
+A++RLA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGFK STY W
Sbjct: 130 MAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATW 189
Query: 153 WIRQGVSRALVENSRTLRLPTHLHERLS-LIRTAKFRLEERGITPTIDRIAKSLNMSQKK 211
WIRQ ++RA+ + +RT+R+P H+ E ++ L+R + L+E G PT ++IA+ + M+ K
Sbjct: 190 WIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMEMTPDK 249
Query: 212 VRNATEAISKVFSLDREAFPSLNGLPGDTH-HCYIADNRLENIPWHGVDEWTLKDEVNKL 270
VR + + SL+ + G D+H +I D +EN P L+++++++
Sbjct: 250 VREILKIAQEPVSLE-----TPIGEEDDSHLGDFIEDEVIEN-PVDYTTRVVLREQLDEV 303
Query: 271 INVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKHAARKRE 329
++ TL +RE ++RL +GLD + T ED+ K ++RER+RQ+ AL KL+H +R ++
Sbjct: 304 LD-TLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQ 362
Query: 330 M 330
+
Sbjct: 363 L 363
>Q1J7D7_STRPF (tr|Q1J7D7) RNA polymerase sigma factor OS=Streptococcus pyogenes
serotype M4 (strain MGAS10750) GN=rpoD PE=3 SV=1
Length = 369
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 92/241 (38%), Positives = 155/241 (64%), Gaps = 10/241 (4%)
Query: 93 LARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYW 152
+A++RLA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGFK STY W
Sbjct: 130 MAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATW 189
Query: 153 WIRQGVSRALVENSRTLRLPTHLHERLS-LIRTAKFRLEERGITPTIDRIAKSLNMSQKK 211
WIRQ ++RA+ + +RT+R+P H+ E ++ L+R + L+E G PT ++IA+ + M+ K
Sbjct: 190 WIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMEMTPDK 249
Query: 212 VRNATEAISKVFSLDREAFPSLNGLPGDTH-HCYIADNRLENIPWHGVDEWTLKDEVNKL 270
VR + + SL+ + G D+H +I D +EN P L+++++++
Sbjct: 250 VREILKIAQEPVSLE-----TPIGEEDDSHLGDFIEDEVIEN-PVDYTTRVVLREQLDEV 303
Query: 271 INVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKHAARKRE 329
++ TL +RE ++RL +GLD + T ED+ K ++RER+RQ+ AL KL+H +R ++
Sbjct: 304 LD-TLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQ 362
Query: 330 M 330
+
Sbjct: 363 L 363
>B5XKR9_STRPZ (tr|B5XKR9) RNA polymerase sigma factor OS=Streptococcus pyogenes
serotype M49 (strain NZ131) GN=rpoD PE=3 SV=1
Length = 369
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 92/241 (38%), Positives = 155/241 (64%), Gaps = 10/241 (4%)
Query: 93 LARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYW 152
+A++RLA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGFK STY W
Sbjct: 130 MAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATW 189
Query: 153 WIRQGVSRALVENSRTLRLPTHLHERLS-LIRTAKFRLEERGITPTIDRIAKSLNMSQKK 211
WIRQ ++RA+ + +RT+R+P H+ E ++ L+R + L+E G PT ++IA+ + M+ K
Sbjct: 190 WIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMEMTPDK 249
Query: 212 VRNATEAISKVFSLDREAFPSLNGLPGDTH-HCYIADNRLENIPWHGVDEWTLKDEVNKL 270
VR + + SL+ + G D+H +I D +EN P L+++++++
Sbjct: 250 VREILKIAQEPVSLE-----TPIGEEDDSHLGDFIEDEVIEN-PVDYTTRVVLREQLDEV 303
Query: 271 INVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKHAARKRE 329
++ TL +RE ++RL +GLD + T ED+ K ++RER+RQ+ AL KL+H +R ++
Sbjct: 304 LD-TLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQ 362
Query: 330 M 330
+
Sbjct: 363 L 363
>A2RFA3_STRPG (tr|A2RFA3) RNA polymerase sigma factor OS=Streptococcus pyogenes
serotype M5 (strain Manfredo) GN=rpoD PE=3 SV=1
Length = 369
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 92/241 (38%), Positives = 155/241 (64%), Gaps = 10/241 (4%)
Query: 93 LARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYW 152
+A++RLA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGFK STY W
Sbjct: 130 MAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATW 189
Query: 153 WIRQGVSRALVENSRTLRLPTHLHERLS-LIRTAKFRLEERGITPTIDRIAKSLNMSQKK 211
WIRQ ++RA+ + +RT+R+P H+ E ++ L+R + L+E G PT ++IA+ + M+ K
Sbjct: 190 WIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMEMTPDK 249
Query: 212 VRNATEAISKVFSLDREAFPSLNGLPGDTH-HCYIADNRLENIPWHGVDEWTLKDEVNKL 270
VR + + SL+ + G D+H +I D +EN P L+++++++
Sbjct: 250 VREILKIAQEPVSLE-----TPIGEEDDSHLGDFIEDEVIEN-PVDYTTRVVLREQLDEV 303
Query: 271 INVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKHAARKRE 329
++ TL +RE ++RL +GLD + T ED+ K ++RER+RQ+ AL KL+H +R ++
Sbjct: 304 LD-TLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQ 362
Query: 330 M 330
+
Sbjct: 363 L 363
>K4N5H7_STRPY (tr|K4N5H7) RNA polymerase sigma factor OS=Streptococcus pyogenes
A20 GN=rpoD PE=3 SV=1
Length = 369
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 92/241 (38%), Positives = 155/241 (64%), Gaps = 10/241 (4%)
Query: 93 LARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYW 152
+A++RLA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGFK STY W
Sbjct: 130 MAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATW 189
Query: 153 WIRQGVSRALVENSRTLRLPTHLHERLS-LIRTAKFRLEERGITPTIDRIAKSLNMSQKK 211
WIRQ ++RA+ + +RT+R+P H+ E ++ L+R + L+E G PT ++IA+ + M+ K
Sbjct: 190 WIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMEMTPDK 249
Query: 212 VRNATEAISKVFSLDREAFPSLNGLPGDTH-HCYIADNRLENIPWHGVDEWTLKDEVNKL 270
VR + + SL+ + G D+H +I D +EN P L+++++++
Sbjct: 250 VREILKIAQEPVSLE-----TPIGEEDDSHLGDFIEDEVIEN-PVDYTTRVVLREQLDEV 303
Query: 271 INVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKHAARKRE 329
++ TL +RE ++RL +GLD + T ED+ K ++RER+RQ+ AL KL+H +R ++
Sbjct: 304 LD-TLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQ 362
Query: 330 M 330
+
Sbjct: 363 L 363
>J7M1E1_STRP1 (tr|J7M1E1) RNA polymerase sigma factor OS=Streptococcus pyogenes
M1 476 GN=rpoD PE=3 SV=1
Length = 369
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 92/241 (38%), Positives = 155/241 (64%), Gaps = 10/241 (4%)
Query: 93 LARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYW 152
+A++RLA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGFK STY W
Sbjct: 130 MAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATW 189
Query: 153 WIRQGVSRALVENSRTLRLPTHLHERLS-LIRTAKFRLEERGITPTIDRIAKSLNMSQKK 211
WIRQ ++RA+ + +RT+R+P H+ E ++ L+R + L+E G PT ++IA+ + M+ K
Sbjct: 190 WIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMEMTPDK 249
Query: 212 VRNATEAISKVFSLDREAFPSLNGLPGDTH-HCYIADNRLENIPWHGVDEWTLKDEVNKL 270
VR + + SL+ + G D+H +I D +EN P L+++++++
Sbjct: 250 VREILKIAQEPVSLE-----TPIGEEDDSHLGDFIEDEVIEN-PVDYTTRVVLREQLDEV 303
Query: 271 INVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKHAARKRE 329
++ TL +RE ++RL +GLD + T ED+ K ++RER+RQ+ AL KL+H +R ++
Sbjct: 304 LD-TLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQ 362
Query: 330 M 330
+
Sbjct: 363 L 363
>I3I2H4_STRPY (tr|I3I2H4) RNA polymerase sigma factor OS=Streptococcus pyogenes
HKU QMH11M0907901 GN=SPYOHK_06605 PE=3 SV=1
Length = 369
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 92/241 (38%), Positives = 155/241 (64%), Gaps = 10/241 (4%)
Query: 93 LARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYW 152
+A++RLA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGFK STY W
Sbjct: 130 MAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATW 189
Query: 153 WIRQGVSRALVENSRTLRLPTHLHERLS-LIRTAKFRLEERGITPTIDRIAKSLNMSQKK 211
WIRQ ++RA+ + +RT+R+P H+ E ++ L+R + L+E G PT ++IA+ + M+ K
Sbjct: 190 WIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMEMTPDK 249
Query: 212 VRNATEAISKVFSLDREAFPSLNGLPGDTH-HCYIADNRLENIPWHGVDEWTLKDEVNKL 270
VR + + SL+ + G D+H +I D +EN P L+++++++
Sbjct: 250 VREILKIAQEPVSLE-----TPIGEEDDSHLGDFIEDEVIEN-PVDYTTRVVLREQLDEV 303
Query: 271 INVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKHAARKRE 329
++ TL +RE ++RL +GLD + T ED+ K ++RER+RQ+ AL KL+H +R ++
Sbjct: 304 LD-TLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQ 362
Query: 330 M 330
+
Sbjct: 363 L 363
>H8HDH9_STRPY (tr|H8HDH9) RNA polymerase sigma factor OS=Streptococcus pyogenes
MGAS1882 GN=rpoD PE=3 SV=1
Length = 369
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 92/241 (38%), Positives = 155/241 (64%), Gaps = 10/241 (4%)
Query: 93 LARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYW 152
+A++RLA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGFK STY W
Sbjct: 130 MAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATW 189
Query: 153 WIRQGVSRALVENSRTLRLPTHLHERLS-LIRTAKFRLEERGITPTIDRIAKSLNMSQKK 211
WIRQ ++RA+ + +RT+R+P H+ E ++ L+R + L+E G PT ++IA+ + M+ K
Sbjct: 190 WIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMEMTPDK 249
Query: 212 VRNATEAISKVFSLDREAFPSLNGLPGDTH-HCYIADNRLENIPWHGVDEWTLKDEVNKL 270
VR + + SL+ + G D+H +I D +EN P L+++++++
Sbjct: 250 VREILKIAQEPVSLE-----TPIGEEDDSHLGDFIEDEVIEN-PVDYTTRVVLREQLDEV 303
Query: 271 INVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKHAARKRE 329
++ TL +RE ++RL +GLD + T ED+ K ++RER+RQ+ AL KL+H +R ++
Sbjct: 304 LD-TLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQ 362
Query: 330 M 330
+
Sbjct: 363 L 363
>H8H9X1_STRPY (tr|H8H9X1) RNA polymerase sigma factor OS=Streptococcus pyogenes
MGAS15252 GN=rpoD PE=3 SV=1
Length = 369
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 92/241 (38%), Positives = 155/241 (64%), Gaps = 10/241 (4%)
Query: 93 LARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYW 152
+A++RLA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGFK STY W
Sbjct: 130 MAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATW 189
Query: 153 WIRQGVSRALVENSRTLRLPTHLHERLS-LIRTAKFRLEERGITPTIDRIAKSLNMSQKK 211
WIRQ ++RA+ + +RT+R+P H+ E ++ L+R + L+E G PT ++IA+ + M+ K
Sbjct: 190 WIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMEMTPDK 249
Query: 212 VRNATEAISKVFSLDREAFPSLNGLPGDTH-HCYIADNRLENIPWHGVDEWTLKDEVNKL 270
VR + + SL+ + G D+H +I D +EN P L+++++++
Sbjct: 250 VREILKIAQEPVSLE-----TPIGEEDDSHLGDFIEDEVIEN-PVDYTTRVVLREQLDEV 303
Query: 271 INVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKHAARKRE 329
++ TL +RE ++RL +GLD + T ED+ K ++RER+RQ+ AL KL+H +R ++
Sbjct: 304 LD-TLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQ 362
Query: 330 M 330
+
Sbjct: 363 L 363
>H8F6A0_STRPY (tr|H8F6A0) RNA polymerase sigma factor OS=Streptococcus pyogenes
NS88.2 PE=3 SV=1
Length = 369
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 92/241 (38%), Positives = 155/241 (64%), Gaps = 10/241 (4%)
Query: 93 LARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYW 152
+A++RLA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGFK STY W
Sbjct: 130 MAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATW 189
Query: 153 WIRQGVSRALVENSRTLRLPTHLHERLS-LIRTAKFRLEERGITPTIDRIAKSLNMSQKK 211
WIRQ ++RA+ + +RT+R+P H+ E ++ L+R + L+E G PT ++IA+ + M+ K
Sbjct: 190 WIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMEMTPDK 249
Query: 212 VRNATEAISKVFSLDREAFPSLNGLPGDTH-HCYIADNRLENIPWHGVDEWTLKDEVNKL 270
VR + + SL+ + G D+H +I D +EN P L+++++++
Sbjct: 250 VREILKIAQEPVSLE-----TPIGEEDDSHLGDFIEDEVIEN-PVDYTTRVVLREQLDEV 303
Query: 271 INVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKHAARKRE 329
++ TL +RE ++RL +GLD + T ED+ K ++RER+RQ+ AL KL+H +R ++
Sbjct: 304 LD-TLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQ 362
Query: 330 M 330
+
Sbjct: 363 L 363
>G4R3W9_STRPY (tr|G4R3W9) RNA polymerase sigma factor OS=Streptococcus pyogenes
Alab49 GN=rpoD PE=3 SV=1
Length = 369
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 92/241 (38%), Positives = 155/241 (64%), Gaps = 10/241 (4%)
Query: 93 LARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYW 152
+A++RLA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGFK STY W
Sbjct: 130 MAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATW 189
Query: 153 WIRQGVSRALVENSRTLRLPTHLHERLS-LIRTAKFRLEERGITPTIDRIAKSLNMSQKK 211
WIRQ ++RA+ + +RT+R+P H+ E ++ L+R + L+E G PT ++IA+ + M+ K
Sbjct: 190 WIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMEMTPDK 249
Query: 212 VRNATEAISKVFSLDREAFPSLNGLPGDTH-HCYIADNRLENIPWHGVDEWTLKDEVNKL 270
VR + + SL+ + G D+H +I D +EN P L+++++++
Sbjct: 250 VREILKIAQEPVSLE-----TPIGEEDDSHLGDFIEDEVIEN-PVDYTTRVVLREQLDEV 303
Query: 271 INVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKHAARKRE 329
++ TL +RE ++RL +GLD + T ED+ K ++RER+RQ+ AL KL+H +R ++
Sbjct: 304 LD-TLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQ 362
Query: 330 M 330
+
Sbjct: 363 L 363
>E0PWR8_STRPY (tr|E0PWR8) RNA polymerase sigma factor OS=Streptococcus pyogenes
ATCC 10782 GN=rpoD PE=3 SV=1
Length = 369
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 92/241 (38%), Positives = 155/241 (64%), Gaps = 10/241 (4%)
Query: 93 LARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYW 152
+A++RLA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGFK STY W
Sbjct: 130 MAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATW 189
Query: 153 WIRQGVSRALVENSRTLRLPTHLHERLS-LIRTAKFRLEERGITPTIDRIAKSLNMSQKK 211
WIRQ ++RA+ + +RT+R+P H+ E ++ L+R + L+E G PT ++IA+ + M+ K
Sbjct: 190 WIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMEMTPDK 249
Query: 212 VRNATEAISKVFSLDREAFPSLNGLPGDTH-HCYIADNRLENIPWHGVDEWTLKDEVNKL 270
VR + + SL+ + G D+H +I D +EN P L+++++++
Sbjct: 250 VREILKIAQEPVSLE-----TPIGEEDDSHLGDFIEDEVIEN-PVDYTTRVVLREQLDEV 303
Query: 271 INVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKHAARKRE 329
++ TL +RE ++RL +GLD + T ED+ K ++RER+RQ+ AL KL+H +R ++
Sbjct: 304 LD-TLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQ 362
Query: 330 M 330
+
Sbjct: 363 L 363
>E3CRI9_STRVE (tr|E3CRI9) RNA polymerase sigma factor OS=Streptococcus
vestibularis F0396 GN=rpoD PE=3 SV=1
Length = 369
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 92/244 (37%), Positives = 156/244 (63%), Gaps = 10/244 (4%)
Query: 94 ARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 153
A++RLA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGFK STY WW
Sbjct: 131 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWW 190
Query: 154 IRQGVSRALVENSRTLRLPTHLHERLS-LIRTAKFRLEERGITPTIDRIAKSLNMSQKKV 212
IRQ ++RA+ + +RT+R+P H+ E ++ L+R + L+E G PT ++IA+ ++M+ KV
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKV 250
Query: 213 RNATEAISKVFSLDREAFPSLNGLPGDTH-HCYIADNRLENIPWHGVDEWTLKDEVNKLI 271
R + + SL+ G D+H +I D +EN P L++++++++
Sbjct: 251 REILKIAQEPVSLETPI-----GEEDDSHLGDFIEDEVIEN-PVDYTTRVVLREQLDEVL 304
Query: 272 NVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKHAARKREM 330
+ TL +RE ++RL +GLD + T ED+ K ++RER+RQ+ AL KL+H +R +++
Sbjct: 305 D-TLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQL 363
Query: 331 EAML 334
+ +
Sbjct: 364 KDFI 367
>M1Y0U8_STRAG (tr|M1Y0U8) RNA polymerase sigma factor OS=Streptococcus agalactiae
LADL-90-503 GN=rpoD PE=3 SV=1
Length = 369
Score = 171 bits (432), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 91/245 (37%), Positives = 157/245 (64%), Gaps = 10/245 (4%)
Query: 93 LARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYW 152
+A++RLA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGFK STY W
Sbjct: 130 MAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATW 189
Query: 153 WIRQGVSRALVENSRTLRLPTHLHERLS-LIRTAKFRLEERGITPTIDRIAKSLNMSQKK 211
WIRQ ++RA+ + +RT+R+P H+ E ++ L+R + L++ G PT ++IA+ ++M+ K
Sbjct: 190 WIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQDLGQDPTPEQIAERMDMTPDK 249
Query: 212 VRNATEAISKVFSLDREAFPSLNGLPGDTH-HCYIADNRLENIPWHGVDEWTLKDEVNKL 270
VR + + SL+ G D+H +I D +EN P L+++++++
Sbjct: 250 VREILKIAQEPVSLETPI-----GEEDDSHLGDFIEDEVIEN-PVDYTTRVVLREQLDEV 303
Query: 271 INVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKHAARKRE 329
++ TL +RE ++RL +GLD + T ED+ K ++RER+RQ+ AL KL+H +R ++
Sbjct: 304 LD-TLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQ 362
Query: 330 MEAML 334
++ +
Sbjct: 363 LKDFM 367
>M1XLX1_STRAG (tr|M1XLX1) RNA polymerase sigma factor OS=Streptococcus agalactiae
SS1219 GN=rpoD PE=3 SV=1
Length = 369
Score = 171 bits (432), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 91/245 (37%), Positives = 157/245 (64%), Gaps = 10/245 (4%)
Query: 93 LARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYW 152
+A++RLA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGFK STY W
Sbjct: 130 MAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATW 189
Query: 153 WIRQGVSRALVENSRTLRLPTHLHERLS-LIRTAKFRLEERGITPTIDRIAKSLNMSQKK 211
WIRQ ++RA+ + +RT+R+P H+ E ++ L+R + L++ G PT ++IA+ ++M+ K
Sbjct: 190 WIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQDLGQDPTPEQIAERMDMTPDK 249
Query: 212 VRNATEAISKVFSLDREAFPSLNGLPGDTH-HCYIADNRLENIPWHGVDEWTLKDEVNKL 270
VR + + SL+ G D+H +I D +EN P L+++++++
Sbjct: 250 VREILKIAQEPVSLETPI-----GEEDDSHLGDFIEDEVIEN-PVDYTTRVVLREQLDEV 303
Query: 271 INVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKHAARKRE 329
++ TL +RE ++RL +GLD + T ED+ K ++RER+RQ+ AL KL+H +R ++
Sbjct: 304 LD-TLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQ 362
Query: 330 MEAML 334
++ +
Sbjct: 363 LKDFM 367
>K4PST0_STRAG (tr|K4PST0) RNA polymerase sigma factor OS=Streptococcus agalactiae
SA20-06 GN=rpoD PE=3 SV=1
Length = 369
Score = 171 bits (432), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 91/245 (37%), Positives = 157/245 (64%), Gaps = 10/245 (4%)
Query: 93 LARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYW 152
+A++RLA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGFK STY W
Sbjct: 130 MAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATW 189
Query: 153 WIRQGVSRALVENSRTLRLPTHLHERLS-LIRTAKFRLEERGITPTIDRIAKSLNMSQKK 211
WIRQ ++RA+ + +RT+R+P H+ E ++ L+R + L++ G PT ++IA+ ++M+ K
Sbjct: 190 WIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQDLGQDPTPEQIAERMDMTPDK 249
Query: 212 VRNATEAISKVFSLDREAFPSLNGLPGDTH-HCYIADNRLENIPWHGVDEWTLKDEVNKL 270
VR + + SL+ G D+H +I D +EN P L+++++++
Sbjct: 250 VREILKIAQEPVSLETPI-----GEEDDSHLGDFIEDEVIEN-PVDYTTRVVLREQLDEV 303
Query: 271 INVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKHAARKRE 329
++ TL +RE ++RL +GLD + T ED+ K ++RER+RQ+ AL KL+H +R ++
Sbjct: 304 LD-TLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQ 362
Query: 330 MEAML 334
++ +
Sbjct: 363 LKDFM 367
>K0U7Y0_STRAG (tr|K0U7Y0) RNA polymerase sigma factor OS=Streptococcus agalactiae
STIR-CD-17 GN=M3M_06394 PE=3 SV=1
Length = 369
Score = 171 bits (432), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 91/245 (37%), Positives = 157/245 (64%), Gaps = 10/245 (4%)
Query: 93 LARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYW 152
+A++RLA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGFK STY W
Sbjct: 130 MAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATW 189
Query: 153 WIRQGVSRALVENSRTLRLPTHLHERLS-LIRTAKFRLEERGITPTIDRIAKSLNMSQKK 211
WIRQ ++RA+ + +RT+R+P H+ E ++ L+R + L++ G PT ++IA+ ++M+ K
Sbjct: 190 WIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQDLGQDPTPEQIAERMDMTPDK 249
Query: 212 VRNATEAISKVFSLDREAFPSLNGLPGDTH-HCYIADNRLENIPWHGVDEWTLKDEVNKL 270
VR + + SL+ G D+H +I D +EN P L+++++++
Sbjct: 250 VREILKIAQEPVSLETPI-----GEEDDSHLGDFIEDEVIEN-PVDYTTRVVLREQLDEV 303
Query: 271 INVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKHAARKRE 329
++ TL +RE ++RL +GLD + T ED+ K ++RER+RQ+ AL KL+H +R ++
Sbjct: 304 LD-TLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQ 362
Query: 330 MEAML 334
++ +
Sbjct: 363 LKDFM 367
>B1SG84_9STRE (tr|B1SG84) RNA polymerase sigma factor OS=Streptococcus
infantarius subsp. infantarius ATCC BAA-102 GN=rpoD PE=3
SV=1
Length = 369
Score = 171 bits (432), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 92/240 (38%), Positives = 154/240 (64%), Gaps = 10/240 (4%)
Query: 94 ARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 153
A++RLA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGFK STY WW
Sbjct: 131 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWW 190
Query: 154 IRQGVSRALVENSRTLRLPTHLHERLS-LIRTAKFRLEERGITPTIDRIAKSLNMSQKKV 212
IRQ ++RA+ + +RT+R+P H+ E ++ L+R + L+E G PT ++IA+ ++M+ KV
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKV 250
Query: 213 RNATEAISKVFSLDREAFPSLNGLPGDTH-HCYIADNRLENIPWHGVDEWTLKDEVNKLI 271
R + + SL+ G D+H +I D +EN P L++++++++
Sbjct: 251 REILKIAQEPVSLETPI-----GEEDDSHLGDFIEDEVIEN-PVDYTTRVVLREQLDEVL 304
Query: 272 NVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKHAARKREM 330
+ TL +RE ++RL +GLD + T ED+ K ++RER+RQ+ AL KL+H +R +++
Sbjct: 305 D-TLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQL 363
>F5X1S7_STRG1 (tr|F5X1S7) RNA polymerase sigma factor OS=Streptococcus
gallolyticus (strain ATCC 43143 / F-1867) GN=rpoD PE=3
SV=1
Length = 369
Score = 171 bits (432), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 92/240 (38%), Positives = 154/240 (64%), Gaps = 10/240 (4%)
Query: 94 ARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 153
A++RLA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGFK STY WW
Sbjct: 131 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWW 190
Query: 154 IRQGVSRALVENSRTLRLPTHLHERLS-LIRTAKFRLEERGITPTIDRIAKSLNMSQKKV 212
IRQ ++RA+ + +RT+R+P H+ E ++ L+R + L+E G PT ++IA+ ++M+ KV
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKV 250
Query: 213 RNATEAISKVFSLDREAFPSLNGLPGDTH-HCYIADNRLENIPWHGVDEWTLKDEVNKLI 271
R + + SL+ G D+H +I D +EN P L++++++++
Sbjct: 251 REILKIAQEPVSLETPI-----GEEDDSHLGDFIEDEVIEN-PVDYTTRVVLREQLDEVL 304
Query: 272 NVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKHAARKREM 330
+ TL +RE ++RL +GLD + T ED+ K ++RER+RQ+ AL KL+H +R +++
Sbjct: 305 D-TLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQL 363
>F0VS25_STRG2 (tr|F0VS25) RNA polymerase sigma factor OS=Streptococcus
gallolyticus (strain ATCC BAA-2069) GN=rpoD PE=3 SV=1
Length = 369
Score = 171 bits (432), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 92/240 (38%), Positives = 154/240 (64%), Gaps = 10/240 (4%)
Query: 94 ARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 153
A++RLA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGFK STY WW
Sbjct: 131 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWW 190
Query: 154 IRQGVSRALVENSRTLRLPTHLHERLS-LIRTAKFRLEERGITPTIDRIAKSLNMSQKKV 212
IRQ ++RA+ + +RT+R+P H+ E ++ L+R + L+E G PT ++IA+ ++M+ KV
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKV 250
Query: 213 RNATEAISKVFSLDREAFPSLNGLPGDTH-HCYIADNRLENIPWHGVDEWTLKDEVNKLI 271
R + + SL+ G D+H +I D +EN P L++++++++
Sbjct: 251 REILKIAQEPVSLETPI-----GEEDDSHLGDFIEDEVIEN-PVDYTTRVVLREQLDEVL 304
Query: 272 NVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKHAARKREM 330
+ TL +RE ++RL +GLD + T ED+ K ++RER+RQ+ AL KL+H +R +++
Sbjct: 305 D-TLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQL 363
>D3HEB4_STRG3 (tr|D3HEB4) RNA polymerase sigma factor OS=Streptococcus
gallolyticus (strain UCN34) GN=sigA PE=3 SV=1
Length = 369
Score = 171 bits (432), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 92/240 (38%), Positives = 154/240 (64%), Gaps = 10/240 (4%)
Query: 94 ARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 153
A++RLA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGFK STY WW
Sbjct: 131 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWW 190
Query: 154 IRQGVSRALVENSRTLRLPTHLHERLS-LIRTAKFRLEERGITPTIDRIAKSLNMSQKKV 212
IRQ ++RA+ + +RT+R+P H+ E ++ L+R + L+E G PT ++IA+ ++M+ KV
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKV 250
Query: 213 RNATEAISKVFSLDREAFPSLNGLPGDTH-HCYIADNRLENIPWHGVDEWTLKDEVNKLI 271
R + + SL+ G D+H +I D +EN P L++++++++
Sbjct: 251 REILKIAQEPVSLETPI-----GEEDDSHLGDFIEDEVIEN-PVDYTTRVVLREQLDEVL 304
Query: 272 NVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKHAARKREM 330
+ TL +RE ++RL +GLD + T ED+ K ++RER+RQ+ AL KL+H +R +++
Sbjct: 305 D-TLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQL 363
>E0PKV5_STRGY (tr|E0PKV5) RNA polymerase sigma factor OS=Streptococcus
gallolyticus subsp. gallolyticus TX20005 GN=rpoD PE=3
SV=1
Length = 369
Score = 171 bits (432), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 92/240 (38%), Positives = 154/240 (64%), Gaps = 10/240 (4%)
Query: 94 ARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 153
A++RLA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGFK STY WW
Sbjct: 131 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWW 190
Query: 154 IRQGVSRALVENSRTLRLPTHLHERLS-LIRTAKFRLEERGITPTIDRIAKSLNMSQKKV 212
IRQ ++RA+ + +RT+R+P H+ E ++ L+R + L+E G PT ++IA+ ++M+ KV
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKV 250
Query: 213 RNATEAISKVFSLDREAFPSLNGLPGDTH-HCYIADNRLENIPWHGVDEWTLKDEVNKLI 271
R + + SL+ G D+H +I D +EN P L++++++++
Sbjct: 251 REILKIAQEPVSLETPI-----GEEDDSHLGDFIEDEVIEN-PVDYTTRVVLREQLDEVL 304
Query: 272 NVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKHAARKREM 330
+ TL +RE ++RL +GLD + T ED+ K ++RER+RQ+ AL KL+H +R +++
Sbjct: 305 D-TLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQL 363
>Q5M3E3_STRT2 (tr|Q5M3E3) RNA polymerase sigma factor OS=Streptococcus
thermophilus (strain ATCC BAA-250 / LMG 18311) GN=rpoD
PE=3 SV=1
Length = 369
Score = 171 bits (432), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 92/244 (37%), Positives = 156/244 (63%), Gaps = 10/244 (4%)
Query: 94 ARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 153
A++RLA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGFK STY WW
Sbjct: 131 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWW 190
Query: 154 IRQGVSRALVENSRTLRLPTHLHERLS-LIRTAKFRLEERGITPTIDRIAKSLNMSQKKV 212
IRQ ++RA+ + +RT+R+P H+ E ++ L+R + L+E G PT ++IA+ ++M+ KV
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKV 250
Query: 213 RNATEAISKVFSLDREAFPSLNGLPGDTH-HCYIADNRLENIPWHGVDEWTLKDEVNKLI 271
R + + SL+ G D+H +I D +EN P L++++++++
Sbjct: 251 REILKIAQEPVSLETPI-----GEEDDSHLGDFIEDEVIEN-PVDYTTRVVLREQLDEVL 304
Query: 272 NVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKHAARKREM 330
+ TL +RE ++RL +GLD + T ED+ K ++RER+RQ+ AL KL+H +R +++
Sbjct: 305 D-TLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQL 363
Query: 331 EAML 334
+ +
Sbjct: 364 KDFI 367
>R6AIF2_9STRE (tr|R6AIF2) RNA polymerase sigma factor OS=Streptococcus
thermophilus CAG:236 GN=BN551_01532 PE=4 SV=1
Length = 369
Score = 171 bits (432), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 92/244 (37%), Positives = 156/244 (63%), Gaps = 10/244 (4%)
Query: 94 ARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 153
A++RLA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGFK STY WW
Sbjct: 131 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWW 190
Query: 154 IRQGVSRALVENSRTLRLPTHLHERLS-LIRTAKFRLEERGITPTIDRIAKSLNMSQKKV 212
IRQ ++RA+ + +RT+R+P H+ E ++ L+R + L+E G PT ++IA+ ++M+ KV
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKV 250
Query: 213 RNATEAISKVFSLDREAFPSLNGLPGDTH-HCYIADNRLENIPWHGVDEWTLKDEVNKLI 271
R + + SL+ G D+H +I D +EN P L++++++++
Sbjct: 251 REILKIAQEPVSLETPI-----GEEDDSHLGDFIEDEVIEN-PVDYTTRVVLREQLDEVL 304
Query: 272 NVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKHAARKREM 330
+ TL +RE ++RL +GLD + T ED+ K ++RER+RQ+ AL KL+H +R +++
Sbjct: 305 D-TLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQL 363
Query: 331 EAML 334
+ +
Sbjct: 364 KDFI 367
>Q8K811_STRP3 (tr|Q8K811) RNA polymerase sigma factor OS=Streptococcus pyogenes
serotype M3 (strain ATCC BAA-595 / MGAS315) GN=rpoD PE=3
SV=1
Length = 369
Score = 171 bits (432), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 92/241 (38%), Positives = 155/241 (64%), Gaps = 10/241 (4%)
Query: 93 LARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYW 152
+A++RLA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGFK STY W
Sbjct: 130 MAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATW 189
Query: 153 WIRQGVSRALVENSRTLRLPTHLHERLS-LIRTAKFRLEERGITPTIDRIAKSLNMSQKK 211
WIRQ ++RA+ + +RT+R+P H+ E ++ L+R + L+E G PT ++IA+ + M+ K
Sbjct: 190 WIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMEMTPDK 249
Query: 212 VRNATEAISKVFSLDREAFPSLNGLPGDTH-HCYIADNRLENIPWHGVDEWTLKDEVNKL 270
VR + + SL+ + G D+H +I D +EN P L+++++++
Sbjct: 250 VREILKIAQEPVSLE-----TPIGEEDDSHLGDFIEDEVIEN-PVDYTTRVVLREQLDEV 303
Query: 271 INVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKHAARKRE 329
++ TL +RE ++RL +GLD + T ED+ K ++RER+RQ+ AL KL+H +R ++
Sbjct: 304 LD-TLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQ 362
Query: 330 M 330
+
Sbjct: 363 L 363
>F8LR80_STRE8 (tr|F8LR80) RNA polymerase sigma factor OS=Streptococcus salivarius
(strain JIM8777) GN=rpoD PE=3 SV=1
Length = 369
Score = 171 bits (432), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 92/244 (37%), Positives = 156/244 (63%), Gaps = 10/244 (4%)
Query: 94 ARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 153
A++RLA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGFK STY WW
Sbjct: 131 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWW 190
Query: 154 IRQGVSRALVENSRTLRLPTHLHERLS-LIRTAKFRLEERGITPTIDRIAKSLNMSQKKV 212
IRQ ++RA+ + +RT+R+P H+ E ++ L+R + L+E G PT ++IA+ ++M+ KV
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKV 250
Query: 213 RNATEAISKVFSLDREAFPSLNGLPGDTH-HCYIADNRLENIPWHGVDEWTLKDEVNKLI 271
R + + SL+ G D+H +I D +EN P L++++++++
Sbjct: 251 REILKIAQEPVSLETPI-----GEEDDSHLGDFIEDEVIEN-PVDYTTRVVLREQLDEVL 304
Query: 272 NVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKHAARKREM 330
+ TL +RE ++RL +GLD + T ED+ K ++RER+RQ+ AL KL+H +R +++
Sbjct: 305 D-TLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQL 363
Query: 331 EAML 334
+ +
Sbjct: 364 KDFI 367
>F8LHM1_STREH (tr|F8LHM1) RNA polymerase sigma factor OS=Streptococcus salivarius
(strain CCHSS3) GN=SALIVB_0536 PE=3 SV=1
Length = 369
Score = 171 bits (432), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 92/244 (37%), Positives = 156/244 (63%), Gaps = 10/244 (4%)
Query: 94 ARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 153
A++RLA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGFK STY WW
Sbjct: 131 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWW 190
Query: 154 IRQGVSRALVENSRTLRLPTHLHERLS-LIRTAKFRLEERGITPTIDRIAKSLNMSQKKV 212
IRQ ++RA+ + +RT+R+P H+ E ++ L+R + L+E G PT ++IA+ ++M+ KV
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKV 250
Query: 213 RNATEAISKVFSLDREAFPSLNGLPGDTH-HCYIADNRLENIPWHGVDEWTLKDEVNKLI 271
R + + SL+ G D+H +I D +EN P L++++++++
Sbjct: 251 REILKIAQEPVSLETPI-----GEEDDSHLGDFIEDEVIEN-PVDYTTRVVLREQLDEVL 304
Query: 272 NVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKHAARKREM 330
+ TL +RE ++RL +GLD + T ED+ K ++RER+RQ+ AL KL+H +R +++
Sbjct: 305 D-TLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQL 363
Query: 331 EAML 334
+ +
Sbjct: 364 KDFI 367
>F7ITH4_STRPQ (tr|F7ITH4) RNA polymerase sigma factor OS=Streptococcus pyogenes
serotype M3 (strain SSI-1) GN=SPs1335 PE=3 SV=1
Length = 369
Score = 171 bits (432), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 92/241 (38%), Positives = 155/241 (64%), Gaps = 10/241 (4%)
Query: 93 LARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYW 152
+A++RLA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGFK STY W
Sbjct: 130 MAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATW 189
Query: 153 WIRQGVSRALVENSRTLRLPTHLHERLS-LIRTAKFRLEERGITPTIDRIAKSLNMSQKK 211
WIRQ ++RA+ + +RT+R+P H+ E ++ L+R + L+E G PT ++IA+ + M+ K
Sbjct: 190 WIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMEMTPDK 249
Query: 212 VRNATEAISKVFSLDREAFPSLNGLPGDTH-HCYIADNRLENIPWHGVDEWTLKDEVNKL 270
VR + + SL+ + G D+H +I D +EN P L+++++++
Sbjct: 250 VREILKIAQEPVSLE-----TPIGEEDDSHLGDFIEDEVIEN-PVDYTTRVVLREQLDEV 303
Query: 271 INVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKHAARKRE 329
++ TL +RE ++RL +GLD + T ED+ K ++RER+RQ+ AL KL+H +R ++
Sbjct: 304 LD-TLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQ 362
Query: 330 M 330
+
Sbjct: 363 L 363
>R7MUC6_9STRE (tr|R7MUC6) RNA polymerase sigma factor OS=Streptococcus salivarius
CAG:79 GN=BN784_01340 PE=4 SV=1
Length = 369
Score = 171 bits (432), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 92/244 (37%), Positives = 156/244 (63%), Gaps = 10/244 (4%)
Query: 94 ARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 153
A++RLA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGFK STY WW
Sbjct: 131 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWW 190
Query: 154 IRQGVSRALVENSRTLRLPTHLHERLS-LIRTAKFRLEERGITPTIDRIAKSLNMSQKKV 212
IRQ ++RA+ + +RT+R+P H+ E ++ L+R + L+E G PT ++IA+ ++M+ KV
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKV 250
Query: 213 RNATEAISKVFSLDREAFPSLNGLPGDTH-HCYIADNRLENIPWHGVDEWTLKDEVNKLI 271
R + + SL+ G D+H +I D +EN P L++++++++
Sbjct: 251 REILKIAQEPVSLETPI-----GEEDDSHLGDFIEDEVIEN-PVDYTTRVVLREQLDEVL 304
Query: 272 NVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKHAARKREM 330
+ TL +RE ++RL +GLD + T ED+ K ++RER+RQ+ AL KL+H +R +++
Sbjct: 305 D-TLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQL 363
Query: 331 EAML 334
+ +
Sbjct: 364 KDFI 367
>J7TFC3_STRSL (tr|J7TFC3) RNA polymerase sigma factor OS=Streptococcus salivarius
K12 GN=RSSL_00467 PE=3 SV=1
Length = 369
Score = 171 bits (432), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 92/244 (37%), Positives = 156/244 (63%), Gaps = 10/244 (4%)
Query: 94 ARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 153
A++RLA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGFK STY WW
Sbjct: 131 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWW 190
Query: 154 IRQGVSRALVENSRTLRLPTHLHERLS-LIRTAKFRLEERGITPTIDRIAKSLNMSQKKV 212
IRQ ++RA+ + +RT+R+P H+ E ++ L+R + L+E G PT ++IA+ ++M+ KV
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKV 250
Query: 213 RNATEAISKVFSLDREAFPSLNGLPGDTH-HCYIADNRLENIPWHGVDEWTLKDEVNKLI 271
R + + SL+ G D+H +I D +EN P L++++++++
Sbjct: 251 REILKIAQEPVSLETPI-----GEEDDSHLGDFIEDEVIEN-PVDYTTRVVLREQLDEVL 304
Query: 272 NVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKHAARKREM 330
+ TL +RE ++RL +GLD + T ED+ K ++RER+RQ+ AL KL+H +R +++
Sbjct: 305 D-TLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQL 363
Query: 331 EAML 334
+ +
Sbjct: 364 KDFI 367
>I0QGZ7_STRSL (tr|I0QGZ7) RNA polymerase sigma factor OS=Streptococcus salivarius
PS4 GN=PS4_86148 PE=3 SV=1
Length = 369
Score = 171 bits (432), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 92/244 (37%), Positives = 156/244 (63%), Gaps = 10/244 (4%)
Query: 94 ARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 153
A++RLA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGFK STY WW
Sbjct: 131 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWW 190
Query: 154 IRQGVSRALVENSRTLRLPTHLHERLS-LIRTAKFRLEERGITPTIDRIAKSLNMSQKKV 212
IRQ ++RA+ + +RT+R+P H+ E ++ L+R + L+E G PT ++IA+ ++M+ KV
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKV 250
Query: 213 RNATEAISKVFSLDREAFPSLNGLPGDTH-HCYIADNRLENIPWHGVDEWTLKDEVNKLI 271
R + + SL+ G D+H +I D +EN P L++++++++
Sbjct: 251 REILKIAQEPVSLETPI-----GEEDDSHLGDFIEDEVIEN-PVDYTTRVVLREQLDEVL 304
Query: 272 NVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKHAARKREM 330
+ TL +RE ++RL +GLD + T ED+ K ++RER+RQ+ AL KL+H +R +++
Sbjct: 305 D-TLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQL 363
Query: 331 EAML 334
+ +
Sbjct: 364 KDFI 367
>G2GQY2_STRSL (tr|G2GQY2) RNA polymerase sigma factor OS=Streptococcus salivarius
M18 GN=SSALIVM18_02345 PE=3 SV=1
Length = 369
Score = 171 bits (432), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 92/244 (37%), Positives = 156/244 (63%), Gaps = 10/244 (4%)
Query: 94 ARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 153
A++RLA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGFK STY WW
Sbjct: 131 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWW 190
Query: 154 IRQGVSRALVENSRTLRLPTHLHERLS-LIRTAKFRLEERGITPTIDRIAKSLNMSQKKV 212
IRQ ++RA+ + +RT+R+P H+ E ++ L+R + L+E G PT ++IA+ ++M+ KV
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKV 250
Query: 213 RNATEAISKVFSLDREAFPSLNGLPGDTH-HCYIADNRLENIPWHGVDEWTLKDEVNKLI 271
R + + SL+ G D+H +I D +EN P L++++++++
Sbjct: 251 REILKIAQEPVSLETPI-----GEEDDSHLGDFIEDEVIEN-PVDYTTRVVLREQLDEVL 304
Query: 272 NVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKHAARKREM 330
+ TL +RE ++RL +GLD + T ED+ K ++RER+RQ+ AL KL+H +R +++
Sbjct: 305 D-TLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQL 363
Query: 331 EAML 334
+ +
Sbjct: 364 KDFI 367
>E8KTW8_STRVE (tr|E8KTW8) RNA polymerase sigma factor OS=Streptococcus
vestibularis ATCC 49124 GN=rpoD PE=3 SV=1
Length = 369
Score = 171 bits (432), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 92/244 (37%), Positives = 156/244 (63%), Gaps = 10/244 (4%)
Query: 94 ARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 153
A++RLA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGFK STY WW
Sbjct: 131 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWW 190
Query: 154 IRQGVSRALVENSRTLRLPTHLHERLS-LIRTAKFRLEERGITPTIDRIAKSLNMSQKKV 212
IRQ ++RA+ + +RT+R+P H+ E ++ L+R + L+E G PT ++IA+ ++M+ KV
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKV 250
Query: 213 RNATEAISKVFSLDREAFPSLNGLPGDTH-HCYIADNRLENIPWHGVDEWTLKDEVNKLI 271
R + + SL+ G D+H +I D +EN P L++++++++
Sbjct: 251 REILKIAQEPVSLETPI-----GEEDDSHLGDFIEDEVIEN-PVDYTTRVVLREQLDEVL 304
Query: 272 NVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKHAARKREM 330
+ TL +RE ++RL +GLD + T ED+ K ++RER+RQ+ AL KL+H +R +++
Sbjct: 305 D-TLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQL 363
Query: 331 EAML 334
+ +
Sbjct: 364 KDFI 367
>C2LRD4_STRSL (tr|C2LRD4) RNA polymerase sigma factor OS=Streptococcus salivarius
SK126 GN=STRSA0001_0075 PE=3 SV=1
Length = 369
Score = 171 bits (432), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 92/244 (37%), Positives = 156/244 (63%), Gaps = 10/244 (4%)
Query: 94 ARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 153
A++RLA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGFK STY WW
Sbjct: 131 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWW 190
Query: 154 IRQGVSRALVENSRTLRLPTHLHERLS-LIRTAKFRLEERGITPTIDRIAKSLNMSQKKV 212
IRQ ++RA+ + +RT+R+P H+ E ++ L+R + L+E G PT ++IA+ ++M+ KV
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKV 250
Query: 213 RNATEAISKVFSLDREAFPSLNGLPGDTH-HCYIADNRLENIPWHGVDEWTLKDEVNKLI 271
R + + SL+ G D+H +I D +EN P L++++++++
Sbjct: 251 REILKIAQEPVSLETPI-----GEEDDSHLGDFIEDEVIEN-PVDYTTRVVLREQLDEVL 304
Query: 272 NVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKHAARKREM 330
+ TL +RE ++RL +GLD + T ED+ K ++RER+RQ+ AL KL+H +R +++
Sbjct: 305 D-TLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQL 363
Query: 331 EAML 334
+ +
Sbjct: 364 KDFI 367