Miyakogusa Predicted Gene

Lj3g3v3087300.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3087300.1 tr|I3SSH7|I3SSH7_LOTJA DNA-directed RNA
polymerase subunit OS=Lotus japonicus PE=3
SV=1,85.71,0.0000000000001,seg,NULL; ZF_TFIIS_2,Zinc finger,
TFIIS-type; no description,NULL; C2C2 Zinc finger,Zinc finger,
TFI,CUFF.45299.1
         (58 letters)

Database: trembl 
           41,451,118 sequences; 13,208,986,710 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

I3SSH7_LOTJA (tr|I3SSH7) DNA-directed RNA polymerase subunit OS=...    77   2e-12
I1KJX9_SOYBN (tr|I1KJX9) DNA-directed RNA polymerase subunit OS=...    65   1e-08
I1N2G1_SOYBN (tr|I1N2G1) DNA-directed RNA polymerase subunit OS=...    64   2e-08
C6T364_SOYBN (tr|C6T364) DNA-directed RNA polymerase subunit OS=...    62   5e-08
E2B7S8_HARSA (tr|E2B7S8) DNA-directed RNA polymerase subunit (Fr...    60   3e-07
G7L310_MEDTR (tr|G7L310) DNA-directed RNA polymerase subunit OS=...    60   4e-07
G7KDT1_MEDTR (tr|G7KDT1) DNA-directed RNA polymerase subunit OS=...    59   4e-07
H2Z908_CIOSA (tr|H2Z908) DNA-directed RNA polymerase subunit OS=...    59   9e-07
Q1RPU6_CIOIN (tr|Q1RPU6) DNA-directed RNA polymerase subunit OS=...    57   2e-06
N6TUV5_9CUCU (tr|N6TUV5) Uncharacterized protein (Fragment) OS=D...    57   2e-06
I1BX20_RHIO9 (tr|I1BX20) Uncharacterized protein OS=Rhizopus del...    57   3e-06
G3MN44_9ACAR (tr|G3MN44) DNA-directed RNA polymerase subunit OS=...    57   3e-06
A8WJ33_CAEBR (tr|A8WJ33) Protein CBG23695 OS=Caenorhabditis brig...    56   4e-06
B7P467_IXOSC (tr|B7P467) DNA-directed RNA polymerase subunit (Fr...    56   4e-06
A8XIZ3_CAEBR (tr|A8XIZ3) DNA-directed RNA polymerase subunit OS=...    56   6e-06
G4TWU1_PIRID (tr|G4TWU1) Probable Rpc11-DNA-directed RNA polymer...    56   6e-06
A9QVW4_CAEBE (tr|A9QVW4) DNA-directed RNA polymerase subunit OS=...    55   6e-06
E0VJY8_PEDHC (tr|E0VJY8) DNA-directed RNA polymerase subunit OS=...    55   7e-06
H9KBC5_APIME (tr|H9KBC5) DNA-directed RNA polymerase subunit OS=...    55   7e-06
H2W1Y6_CAEJA (tr|H2W1Y6) DNA-directed RNA polymerase subunit OS=...    55   9e-06
Q6WCQ3_IXOSC (tr|Q6WCQ3) DNA-directed RNA polymerase subunit OS=...    55   9e-06

>I3SSH7_LOTJA (tr|I3SSH7) DNA-directed RNA polymerase subunit OS=Lotus japonicus
           PE=3 SV=1
          Length = 111

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/41 (85%), Positives = 36/41 (87%)

Query: 18  RCQKCSHDKAAYTEFQTRSADEPATIFYLCLNEKCRYQWRE 58
           RC  CSHDKAAYTE Q RSADEPATIFY CLNEKCR+QWRE
Sbjct: 70  RCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 110


>I1KJX9_SOYBN (tr|I1KJX9) DNA-directed RNA polymerase subunit OS=Glycine max PE=3
           SV=1
          Length = 111

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/40 (70%), Positives = 32/40 (80%)

Query: 19  CQKCSHDKAAYTEFQTRSADEPATIFYLCLNEKCRYQWRE 58
           C  C H KAA+ EFQTRSADEPAT+FY CLN +C+ QWRE
Sbjct: 71  CPFCGHGKAAFKEFQTRSADEPATLFYKCLNNECKKQWRE 110


>I1N2G1_SOYBN (tr|I1N2G1) DNA-directed RNA polymerase subunit OS=Glycine max PE=3
           SV=2
          Length = 111

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/40 (70%), Positives = 31/40 (77%)

Query: 19  CQKCSHDKAAYTEFQTRSADEPATIFYLCLNEKCRYQWRE 58
           C  C H KAA+ EFQTRSADEPAT+FY CLN  C+ QWRE
Sbjct: 71  CPFCGHGKAAFKEFQTRSADEPATLFYKCLNNDCKKQWRE 110


>C6T364_SOYBN (tr|C6T364) DNA-directed RNA polymerase subunit OS=Glycine max PE=3
           SV=1
          Length = 111

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 27/40 (67%), Positives = 31/40 (77%)

Query: 19  CQKCSHDKAAYTEFQTRSADEPATIFYLCLNEKCRYQWRE 58
           C  C H KAA+ EFQTRSAD PAT+FY CLN +C+ QWRE
Sbjct: 71  CPFCGHGKAAFKEFQTRSADGPATLFYKCLNNECKKQWRE 110


>E2B7S8_HARSA (tr|E2B7S8) DNA-directed RNA polymerase subunit (Fragment)
           OS=Harpegnathos saltator GN=EAI_08746 PE=3 SV=1
          Length = 109

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/41 (63%), Positives = 31/41 (75%)

Query: 18  RCQKCSHDKAAYTEFQTRSADEPATIFYLCLNEKCRYQWRE 58
           RC +CSH +A YT+ QTRSADEP TIFY C + KC + WRE
Sbjct: 69  RCPRCSHPRAYYTQLQTRSADEPMTIFYKCCDPKCMHSWRE 109


>G7L310_MEDTR (tr|G7L310) DNA-directed RNA polymerase subunit OS=Medicago
           truncatula GN=MTR_7g116750 PE=3 SV=1
          Length = 108

 Score = 59.7 bits (143), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/40 (62%), Positives = 31/40 (77%)

Query: 19  CQKCSHDKAAYTEFQTRSADEPATIFYLCLNEKCRYQWRE 58
           C  C H +A+Y   QTRSADEPATIFY C+N+KC +QW+E
Sbjct: 68  CPNCRHPQASYHMEQTRSADEPATIFYKCMNQKCEHQWKE 107


>G7KDT1_MEDTR (tr|G7KDT1) DNA-directed RNA polymerase subunit OS=Medicago
           truncatula GN=MTR_5g030180 PE=3 SV=1
          Length = 106

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/40 (65%), Positives = 31/40 (77%)

Query: 19  CQKCSHDKAAYTEFQTRSADEPATIFYLCLNEKCRYQWRE 58
           C  C H +A+Y   QTRSADEPATIFY CLNEKC ++W+E
Sbjct: 67  CPNCRHPQASYHMQQTRSADEPATIFYECLNEKCGHKWKE 106


>H2Z908_CIOSA (tr|H2Z908) DNA-directed RNA polymerase subunit OS=Ciona savignyi
           PE=3 SV=1
          Length = 108

 Score = 58.5 bits (140), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 24/41 (58%), Positives = 31/41 (75%)

Query: 18  RCQKCSHDKAAYTEFQTRSADEPATIFYLCLNEKCRYQWRE 58
           +C KC H++A + + QTRSADEP TIFY C N +C +QWRE
Sbjct: 68  KCPKCEHNRAYFMQIQTRSADEPMTIFYKCCNPQCGHQWRE 108


>Q1RPU6_CIOIN (tr|Q1RPU6) DNA-directed RNA polymerase subunit OS=Ciona
           intestinalis GN=Ci-RP-2 PE=3 SV=1
          Length = 108

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/41 (58%), Positives = 30/41 (73%)

Query: 18  RCQKCSHDKAAYTEFQTRSADEPATIFYLCLNEKCRYQWRE 58
           +C KC HD+A + + QTRSADEP TIFY C +  C +QWRE
Sbjct: 68  KCPKCEHDRAYFMQIQTRSADEPMTIFYKCCSPTCGHQWRE 108


>N6TUV5_9CUCU (tr|N6TUV5) Uncharacterized protein (Fragment) OS=Dendroctonus
           ponderosae GN=YQE_01751 PE=4 SV=1
          Length = 109

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/41 (56%), Positives = 30/41 (73%)

Query: 18  RCQKCSHDKAAYTEFQTRSADEPATIFYLCLNEKCRYQWRE 58
           RC KC H++A + + QTRSADEP T FY C N +C+Y WR+
Sbjct: 69  RCPKCDHNRAYFQQLQTRSADEPMTTFYRCCNNECKYNWRD 109


>I1BX20_RHIO9 (tr|I1BX20) Uncharacterized protein OS=Rhizopus delemar (strain
          RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880)
          GN=RO3G_05455 PE=4 SV=1
          Length = 82

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/40 (55%), Positives = 31/40 (77%)

Query: 19 CQKCSHDKAAYTEFQTRSADEPATIFYLCLNEKCRYQWRE 58
          C KC HD+A + + Q RSADEP+++F+ C NE C++QWRE
Sbjct: 42 CPKCEHDRAYFMQIQIRSADEPSSLFFKCCNEDCQHQWRE 81


>G3MN44_9ACAR (tr|G3MN44) DNA-directed RNA polymerase subunit OS=Amblyomma
           maculatum PE=3 SV=1
          Length = 108

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/41 (56%), Positives = 31/41 (75%)

Query: 18  RCQKCSHDKAAYTEFQTRSADEPATIFYLCLNEKCRYQWRE 58
           +C KCSH++A + + QTRSADEP T FY C N +C +QWR+
Sbjct: 68  KCPKCSHERAYFMQIQTRSADEPMTTFYKCCNPQCGHQWRD 108


>A8WJ33_CAEBR (tr|A8WJ33) Protein CBG23695 OS=Caenorhabditis briggsae GN=CBG23695
           PE=4 SV=2
          Length = 315

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/41 (56%), Positives = 30/41 (73%)

Query: 18  RCQKCSHDKAAYTEFQTRSADEPATIFYLCLNEKCRYQWRE 58
           RC  CSH++A + + QTRSADEP TIFY C N  C ++W+E
Sbjct: 275 RCPLCSHERAYFMQLQTRSADEPITIFYRCANNSCAHRWKE 315


>B7P467_IXOSC (tr|B7P467) DNA-directed RNA polymerase subunit (Fragment)
           OS=Ixodes scapularis GN=IscW_ISCW001464 PE=3 SV=1
          Length = 109

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/41 (56%), Positives = 30/41 (73%)

Query: 18  RCQKCSHDKAAYTEFQTRSADEPATIFYLCLNEKCRYQWRE 58
           +C KC H++A + + QTRSADEP T FY C N+ C +QWRE
Sbjct: 69  KCPKCGHERAYFMQIQTRSADEPMTTFYKCCNQLCGHQWRE 109


>A8XIZ3_CAEBR (tr|A8XIZ3) DNA-directed RNA polymerase subunit OS=Caenorhabditis
           briggsae GN=CBG13943 PE=3 SV=1
          Length = 108

 Score = 55.8 bits (133), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 23/41 (56%), Positives = 30/41 (73%)

Query: 18  RCQKCSHDKAAYTEFQTRSADEPATIFYLCLNEKCRYQWRE 58
           RC  CSH++A + + QTRSADEP TIFY C N  C ++W+E
Sbjct: 68  RCPLCSHERAYFMQLQTRSADEPMTIFYRCANNSCAHRWKE 108


>G4TWU1_PIRID (tr|G4TWU1) Probable Rpc11-DNA-directed RNA polymerase III
          subunit C11 OS=Piriformospora indica (strain DSM 11827)
          GN=PIIN_11743 PE=4 SV=1
          Length = 98

 Score = 55.8 bits (133), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 23/40 (57%), Positives = 28/40 (70%)

Query: 19 CQKCSHDKAAYTEFQTRSADEPATIFYLCLNEKCRYQWRE 58
          C KC H  A + E Q RSADEP TIFY C N++C +QW+E
Sbjct: 58 CPKCEHPMAHFMELQIRSADEPMTIFYKCANKECGFQWKE 97


>A9QVW4_CAEBE (tr|A9QVW4) DNA-directed RNA polymerase subunit OS=Caenorhabditis
           brenneri GN=CAEBREN_07334 PE=3 SV=1
          Length = 108

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 23/41 (56%), Positives = 30/41 (73%)

Query: 18  RCQKCSHDKAAYTEFQTRSADEPATIFYLCLNEKCRYQWRE 58
           RC  CSH++A + + QTRSADEP TIFY C N  C ++W+E
Sbjct: 68  RCPVCSHERAYFMQLQTRSADEPMTIFYRCANNACAHRWKE 108


>E0VJY8_PEDHC (tr|E0VJY8) DNA-directed RNA polymerase subunit OS=Pediculus
           humanus subsp. corporis GN=Phum_PHUM253550 PE=3 SV=1
          Length = 108

 Score = 55.5 bits (132), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 23/41 (56%), Positives = 30/41 (73%)

Query: 18  RCQKCSHDKAAYTEFQTRSADEPATIFYLCLNEKCRYQWRE 58
           RC KCSH +A + + QTRSADEP T FY C N +C ++WR+
Sbjct: 68  RCPKCSHSRAYFMQIQTRSADEPMTTFYKCCNPECGHRWRD 108


>H9KBC5_APIME (tr|H9KBC5) DNA-directed RNA polymerase subunit OS=Apis mellifera
           PE=3 SV=1
          Length = 108

 Score = 55.5 bits (132), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 23/41 (56%), Positives = 29/41 (70%)

Query: 18  RCQKCSHDKAAYTEFQTRSADEPATIFYLCLNEKCRYQWRE 58
           RC KCSH +A + + QTRSADEP T FY C N +C + WR+
Sbjct: 68  RCPKCSHPRAYFMQIQTRSADEPMTTFYRCCNPQCAHNWRD 108


>H2W1Y6_CAEJA (tr|H2W1Y6) DNA-directed RNA polymerase subunit OS=Caenorhabditis
           japonica GN=WBGene00128156 PE=3 SV=1
          Length = 108

 Score = 55.1 bits (131), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 30/41 (73%)

Query: 18  RCQKCSHDKAAYTEFQTRSADEPATIFYLCLNEKCRYQWRE 58
           RC  CSHD+A + + QTRSADEP T+FY C +  C ++W+E
Sbjct: 68  RCPLCSHDRAYFMQLQTRSADEPMTVFYRCADNACAHRWKE 108


>Q6WCQ3_IXOSC (tr|Q6WCQ3) DNA-directed RNA polymerase subunit OS=Ixodes
           scapularis PE=3 SV=1
          Length = 108

 Score = 55.1 bits (131), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 30/41 (73%)

Query: 18  RCQKCSHDKAAYTEFQTRSADEPATIFYLCLNEKCRYQWRE 58
           +C KC H++A + + QTRSADEP T FY C N+ C +QWR+
Sbjct: 68  KCPKCGHERAYFMQIQTRSADEPMTTFYKCCNQLCGHQWRD 108