Miyakogusa Predicted Gene

Lj3g3v2096000.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2096000.1 tr|B7FGJ2|B7FGJ2_MEDTR Ribosomal protein L34
OS=Medicago truncatula PE=2
SV=1,59.52,0.000000000000005,seg,NULL,83303_g.1
         (84 letters)

Database: trembl 
           41,451,118 sequences; 13,208,986,710 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

I3S1W2_LOTJA (tr|I3S1W2) Ribosomal protein L34 OS=Lotus japonicu...   121   8e-26
B7FGJ2_MEDTR (tr|B7FGJ2) Ribosomal protein L34 OS=Medicago trunc...    74   2e-11
Q6ZZ86_CICAR (tr|Q6ZZ86) Ribosomal protein L34 OS=Cicer arietinu...    71   2e-10

>I3S1W2_LOTJA (tr|I3S1W2) Ribosomal protein L34 OS=Lotus japonicus PE=2 SV=1
          Length = 145

 Score =  121 bits (304), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 67/84 (79%), Positives = 67/84 (79%)

Query: 1  MASKTLLRSGSTLLNRFSNSKSXXXXXXXXXXXXXQLFQIPTLSKPTSSPQNDADSPSKL 60
          MASKTLLRSGSTLLNRFSNSKS             QLFQIP LSK  S PQNDADSPSKL
Sbjct: 1  MASKTLLRSGSTLLNRFSNSKSLLNPNLHPNHPLPQLFQIPPLSKLPSFPQNDADSPSKL 60

Query: 61 LASQGFLYPCGLPDLSFFLPQATV 84
          LASQGFLYPCGLPDLSFFLPQATV
Sbjct: 61 LASQGFLYPCGLPDLSFFLPQATV 84


>B7FGJ2_MEDTR (tr|B7FGJ2) Ribosomal protein L34 OS=Medicago truncatula PE=2
          SV=1
          Length = 133

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/84 (52%), Positives = 53/84 (63%), Gaps = 8/84 (9%)

Query: 1  MASKTLLRSGSTLLNRFS--NSKSXXXXXXXXXXXXXQLFQIPTLSKPTSSPQNDADSPS 58
          MASK+LLR+G+ LLNR S  NSKS             Q +  P++SK  + PQ+DA+S  
Sbjct: 1  MASKSLLRNGAALLNRLSLSNSKSLINYNNP------QPYLFPSISKLQNFPQDDAESVK 54

Query: 59 KLLASQGFLYPCGLPDLSFFLPQA 82
          KLL S GFLYPCGLP L FFLP  
Sbjct: 55 KLLCSDGFLYPCGLPSLRFFLPDG 78


>Q6ZZ86_CICAR (tr|Q6ZZ86) Ribosomal protein L34 OS=Cicer arietinum GN=Lin1 PE=2
          SV=1
          Length = 134

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/82 (52%), Positives = 51/82 (62%), Gaps = 4/82 (4%)

Query: 1  MASKTLLRSGSTLLNRFSNSKSXXXXXXXXXXXXXQLFQIPTLSKPTSSPQNDADSPSKL 60
          MASKTLLR+G  LLNR S S S             Q +  P+LSK  + PQNDA+S   L
Sbjct: 1  MASKTLLRNGVALLNRLSLSNSKSLLNSNNP----QPYIFPSLSKLQNFPQNDAESAKNL 56

Query: 61 LASQGFLYPCGLPDLSFFLPQA 82
          ++S+GFLYPCGLP L FFLP  
Sbjct: 57 ISSEGFLYPCGLPSLRFFLPNG 78