Miyakogusa Predicted Gene

Lj3g3v1541210.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1541210.1 Non Chatacterized Hit- tr|C6T493|C6T493_SOYBN
Putative uncharacterized protein OS=Glycine max PE=2
S,47.33,0.00000000003,seg,NULL,
gene.Ljchr3_pseudomol_20120830.path1.gene3515.1
         (256 letters)

Database: trembl 
           41,451,118 sequences; 13,208,986,710 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

C6T493_SOYBN (tr|C6T493) Putative uncharacterized protein OS=Gly...    74   5e-11

>C6T493_SOYBN (tr|C6T493) Putative uncharacterized protein OS=Glycine max PE=2
           SV=1
          Length = 180

 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 53/131 (40%), Positives = 64/131 (48%), Gaps = 10/131 (7%)

Query: 1   MQQPKSTLGRPMALITPTVSGINWLQRARCAS---LCYFSLRYHTTHSSCQLMAFILLIG 57
           MQ  K T GRP         G ++  R    S   L     +Y + H   +  A +LLIG
Sbjct: 1   MQHRKLTSGRPSG-----TDGSDYSYRMVVDSRYQLVAKGKKYLSLHFITE--AVLLLIG 53

Query: 58  VIFAFLPGIQQHTSNTAAFXXXXXXXXXXXXAEIGRRRSRSTLLRFYAIVSSIATLHLIA 117
              A+LPGI+    NT A+              IGR RSRS LLRFYA+VSSI  L LIA
Sbjct: 54  ATLAYLPGIEADAPNTVAYSSVIVSVVSLIIGNIGRGRSRSGLLRFYAVVSSIVMLLLIA 113

Query: 118 SLAIWHSLPKS 128
           SLA  H L K+
Sbjct: 114 SLATQHLLLKA 124