Miyakogusa Predicted Gene

Lj2g3v2087670.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2087670.1 tr|G7LDT6|G7LDT6_MEDTR Replication factor A
protein OS=Medicago truncatula GN=MTR_8g062030 PE=4
SV=1,29.27,0.0000006, ,CUFF.38504.1
         (155 letters)

Database: trembl 
           41,451,118 sequences; 13,208,986,710 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

G7LDT6_MEDTR (tr|G7LDT6) Replication factor A protein OS=Medicag...    60   3e-07
I3SCE2_LOTJA (tr|I3SCE2) Uncharacterized protein OS=Lotus japoni...    57   2e-06
M1AA20_SOLTU (tr|M1AA20) Uncharacterized protein OS=Solanum tube...    56   4e-06

>G7LDT6_MEDTR (tr|G7LDT6) Replication factor A protein OS=Medicago truncatula
           GN=MTR_8g062030 PE=4 SV=1
          Length = 559

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 61/123 (49%), Gaps = 5/123 (4%)

Query: 1   MVKMMHRYRLNVHVSDGVQSSVFILSDPEATHIIKKACEEFAYASPQPLAAHFPPEVEEK 60
           +++M+ RY++ + V DG   SVF+L D +  ++++K C      S       +PPE+   
Sbjct: 315 VIQMVPRYKIKLRVDDGTGDSVFVLFDSDVHYLLEKQCSVLVAKSKGDDVGFYPPEI-VM 373

Query: 61  LVGAEVLFKVRNDV--RRLYDGCFCYDVLHICSDSETMDKFSAKRTSVTLVESKSDSRVT 118
           L G   LFKV   V     +DG   Y V  +C+DS  + KF+    + T  ES    ++ 
Sbjct: 374 LKGKRFLFKVDKPVISGGFFDG--SYRVKRVCADSSIVAKFAMNGYNYTPTESIRKGKMV 431

Query: 119 YLE 121
           + E
Sbjct: 432 FDE 434


>I3SCE2_LOTJA (tr|I3SCE2) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
          Length = 406

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 41/64 (64%)

Query: 7   RYRLNVHVSDGVQSSVFILSDPEATHIIKKACEEFAYASPQPLAAHFPPEVEEKLVGAEV 66
           RY++ + V DG  S  F+L D +A H+IKK+C++       P +A   P +EE+LVG E+
Sbjct: 333 RYKIKLEVFDGTDSGNFLLFDSDAHHLIKKSCKDMLGNLKDPKSAEITPLMEEQLVGKEL 392

Query: 67  LFKV 70
           LF+V
Sbjct: 393 LFRV 396


>M1AA20_SOLTU (tr|M1AA20) Uncharacterized protein OS=Solanum tuberosum
           GN=PGSC0003DMG400007030 PE=4 SV=1
          Length = 323

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/140 (23%), Positives = 68/140 (48%), Gaps = 1/140 (0%)

Query: 1   MVKMMHRYRLNVHVSDGVQSSVFILSDPEATHIIKKACEEFAYASPQPLAAHFPPEVEEK 60
           ++ ++HRY L ++V+DG      +L + EA  +I K  +E      + +   +P E+++ 
Sbjct: 125 VISIIHRYDLQMYVTDGTAIISLLLGNREALQLIGKPAKELNEGLLENVECSYPSELDD- 183

Query: 61  LVGAEVLFKVRNDVRRLYDGCFCYDVLHICSDSETMDKFSAKRTSVTLVESKSDSRVTYL 120
           L+  +++FKVRN    +      Y V+   +D   + K+      VTL +S  D   +Y 
Sbjct: 184 LIEKKLMFKVRNKESNISKNDDVYKVIEFTNDETLLKKYCQPSIQVTLNDSSFDYGQSYG 243

Query: 121 EEDNKQAVCVVEKVGLLDED 140
            + + +      +  ++DE+
Sbjct: 244 GDKHFEKTKAARRASIIDEE 263