Miyakogusa Predicted Gene

Lj2g3v0889040.4
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0889040.4 tr|G7LDT6|G7LDT6_MEDTR Replication factor A
protein OS=Medicago truncatula GN=MTR_8g062030 PE=4
SV=1,32.12,0.0000000005,DUF223,Domain of unknown function
DUF223,CUFF.35689.4
         (146 letters)

Database: trembl 
           41,451,118 sequences; 13,208,986,710 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

G7LDT6_MEDTR (tr|G7LDT6) Replication factor A protein OS=Medicag...    69   7e-10
G7KLG4_MEDTR (tr|G7KLG4) Coiled-coil domain-containing protein O...    66   5e-09
I3S7S2_LOTJA (tr|I3S7S2) Uncharacterized protein OS=Lotus japoni...    63   3e-08
G7L8V5_MEDTR (tr|G7L8V5) Replication factor A protein OS=Medicag...    58   9e-07
G7KQQ8_MEDTR (tr|G7KQQ8) Putative uncharacterized protein OS=Med...    58   1e-06
Q2HSY3_MEDTR (tr|Q2HSY3) Nucleic acid-binding, OB-fold, subgroup...    58   1e-06
G7JBH7_MEDTR (tr|G7JBH7) Putative uncharacterized protein OS=Med...    58   1e-06
G7K1P7_MEDTR (tr|G7K1P7) Replication factor A protein OS=Medicag...    57   2e-06
G7IGJ6_MEDTR (tr|G7IGJ6) Replication protein A 70 kDa DNA-bindin...    57   2e-06
G7KPR0_MEDTR (tr|G7KPR0) Fgenesh protein OS=Medicago truncatula ...    57   2e-06
I3SCE2_LOTJA (tr|I3SCE2) Uncharacterized protein OS=Lotus japoni...    57   3e-06

>G7LDT6_MEDTR (tr|G7LDT6) Replication factor A protein OS=Medicago truncatula
           GN=MTR_8g062030 PE=4 SV=1
          Length = 559

 Score = 68.6 bits (166), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 44/137 (32%), Positives = 68/137 (49%), Gaps = 8/137 (5%)

Query: 1   MDTQLSAIDHVTSIQQRGR-SWSIRVRAVAVWRIPFDHITLTPSCLDMILIDRRGTKIQA 59
           MD  L  ++ +      GR +W IRVR V +W +P        + L+M+L+D+ G KIQA
Sbjct: 1   MDKSLDLVNDIVP----GRLNWRIRVRVVRMWEVPTFLKPNQANSLEMVLLDQMGVKIQA 56

Query: 60  SVCRR--HPITRPIEVGRVYNISHFKVVLNDG-IRLTPHDFRLIFHTCTSVAESFDVRIP 116
            V ++  +   + +  G VYNIS+F V  + G  R   H ++++F   T V       IP
Sbjct: 57  IVRKQLIYVFQKRLREGEVYNISYFSVAPSTGSYRAATHPYKIVFQMTTKVQSCTSATIP 116

Query: 117 RNGWSFYNTQIIRNRIV 133
             G SF +   + N  V
Sbjct: 117 LYGLSFTSIVDVSNHTV 133


>G7KLG4_MEDTR (tr|G7KLG4) Coiled-coil domain-containing protein OS=Medicago
           truncatula GN=MTR_6g052340 PE=4 SV=1
          Length = 705

 Score = 65.9 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 42/137 (30%), Positives = 70/137 (51%), Gaps = 13/137 (9%)

Query: 1   MDTQLSAIDHVTSIQQRGRSWSIRVRAVAVWRIPFDHITLTPSCLDMILIDRRGTKIQAS 60
           MD  +  +D V    +   +W   VR + +W +P        + ++M+LID+ G KI A+
Sbjct: 1   MDKSIHNLDDVVP-GRNADAWRFVVRVIRLWEVPLF------TSIEMVLIDQNGVKIHAT 53

Query: 61  VCRR--HPITRPIEVGRVYNISHFKVVLNDG-IRLTPHDFRLIFHTCTSVAESFDVR--- 114
           + ++  +     +  G+VY +S+F V+LN G  R T H ++LIF   T V ES D     
Sbjct: 54  IPKQLMYLFQHKLIEGKVYKLSNFTVLLNSGAYRTTHHTYKLIFQMKTKVEESHDYEISL 113

Query: 115 IPRNGWSFYNTQIIRNR 131
           IP +G +  +   I +R
Sbjct: 114 IPNHGLTLTDISQITSR 130


>I3S7S2_LOTJA (tr|I3S7S2) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
          Length = 242

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 63/121 (52%), Gaps = 9/121 (7%)

Query: 8   IDHVTSIQQRGRSWSIRVRAVAVWRIPFDHITLTPSCLDMILIDRRGTKIQASV-----C 62
           +D V+ +     +W+I  + V +W  P       P  ++++L+D +G +I ASV      
Sbjct: 5   VDDVSDVNNSKDTWNIVTKVVRLWVSPSFSGGKLPFSMELVLMDSKGCQIHASVRKTLVY 64

Query: 63  RRHPITRPIEVGRVYNISHFKVVLNDG-IRLTPHDFRLIFHTCTSVAESFDVRIPRNGWS 121
           R HP+   +  GRVY IS+F V  N G  R T H F++ FH  T V E  +  I ++ +S
Sbjct: 65  RFHPL---LTEGRVYQISYFGVGDNLGDFRTTTHQFKINFHIHTKVKEIGNCPITKSPYS 121

Query: 122 F 122
           F
Sbjct: 122 F 122


>G7L8V5_MEDTR (tr|G7L8V5) Replication factor A protein OS=Medicago truncatula
           GN=MTR_8g088810 PE=4 SV=1
          Length = 296

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 3/117 (2%)

Query: 9   DHVTSIQQRGRSWSIRVRAVAVWRIPFDHITLTPSCLDMILIDRRGTKIQASVCRR--HP 66
           D ++++  R +SW++ VR V  W          P  ++ +LIDR+G +I AS+ R   + 
Sbjct: 6   DFISNVSPRKQSWTLVVRVVRAWFGQDYKNKKLPFSMEFVLIDRKGDQIGASIRRTLIYK 65

Query: 67  ITRPIEVGRVYNISHFKVVLNDG-IRLTPHDFRLIFHTCTSVAESFDVRIPRNGWSF 122
               ++ G V+ IS F V  N G  R + ++++L F   T V  S  + +P N +SF
Sbjct: 66  FKEQLQEGMVFTISSFDVASNSGSYRPSHNEYKLNFTINTKVKLSKTILVPINVYSF 122


>G7KQQ8_MEDTR (tr|G7KQQ8) Putative uncharacterized protein OS=Medicago truncatula
           GN=MTR_7g089660 PE=4 SV=1
          Length = 236

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 62/117 (52%), Gaps = 3/117 (2%)

Query: 9   DHVTSIQQRGRSWSIRVRAVAVWRIPFDHITLTPSCLDMILIDRRGTKIQASVCRR--HP 66
           + ++++  R +SW++ VR V  W          P  ++++LIDR+G +I AS+ R   + 
Sbjct: 6   NFISNVSPRKQSWTLVVRVVRAWFGQNYKNKKLPFSMELVLIDRKGDRIGASIRRTLIYK 65

Query: 67  ITRPIEVGRVYNISHFKVVLNDG-IRLTPHDFRLIFHTCTSVAESFDVRIPRNGWSF 122
               ++ G V+ IS F V  N G  R + ++++L F   T V  S  V +P N +SF
Sbjct: 66  FKNQLQEGMVFTISSFNVASNIGSYRPSRNEYKLNFTINTKVKLSKTVLVPTNVYSF 122


>Q2HSY3_MEDTR (tr|Q2HSY3) Nucleic acid-binding, OB-fold, subgroup OS=Medicago
           truncatula GN=MtrDRAFT_AC150889g19v2 PE=4 SV=1
          Length = 224

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 62/117 (52%), Gaps = 3/117 (2%)

Query: 9   DHVTSIQQRGRSWSIRVRAVAVWRIPFDHITLTPSCLDMILIDRRGTKIQASVCRR--HP 66
           + ++++  R +SW++ VR V  W          P  ++++LIDR+G +I AS+ R   + 
Sbjct: 6   NFISNVSPRKQSWTLVVRVVRAWFGQNYKNKKLPFSMELVLIDRKGDRIGASIRRTLIYK 65

Query: 67  ITRPIEVGRVYNISHFKVVLNDG-IRLTPHDFRLIFHTCTSVAESFDVRIPRNGWSF 122
               ++ G V+ IS F V  N G  R + ++++L F   T V  S  V +P N +SF
Sbjct: 66  FKNQLQEGMVFTISSFNVASNIGSYRPSRNEYKLNFTINTKVKLSKTVLVPTNVYSF 122


>G7JBH7_MEDTR (tr|G7JBH7) Putative uncharacterized protein OS=Medicago truncatula
           GN=MTR_3g095950 PE=4 SV=1
          Length = 203

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 62/117 (52%), Gaps = 3/117 (2%)

Query: 9   DHVTSIQQRGRSWSIRVRAVAVWRIPFDHITLTPSCLDMILIDRRGTKIQASVCRR--HP 66
           + ++++  R +SW++ VR V  W          P  ++++LIDR+G +I AS+ R   + 
Sbjct: 6   NFISNVSPRKQSWTLVVRVVRAWFGQDYKNKKLPFSMELVLIDRKGDRIGASIRRTLIYK 65

Query: 67  ITRPIEVGRVYNISHFKVVLNDG-IRLTPHDFRLIFHTCTSVAESFDVRIPRNGWSF 122
               ++ G V+ IS F V  N G  R + ++++L F   T V  S  V +P N +SF
Sbjct: 66  FKNQLQEGMVFTISSFNVASNIGSYRPSRNEYKLNFTINTKVKLSKTVLVPTNVYSF 122


>G7K1P7_MEDTR (tr|G7K1P7) Replication factor A protein OS=Medicago truncatula
           GN=MTR_5g078250 PE=4 SV=1
          Length = 517

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/105 (33%), Positives = 53/105 (50%), Gaps = 3/105 (2%)

Query: 21  WSIRVRAVAVWRIPFDHITLTPSCLDMILIDRRGTKIQASVCRR--HPITRPIEVGRVYN 78
           W I+VR + +W +P        + L+M+LID  GTKI ASV ++  +     +  G+VY 
Sbjct: 18  WKIKVRVLRLWEVPSFLKPDQTNSLEMVLIDEMGTKIHASVRKQLFYVFQSKLSEGKVYE 77

Query: 79  ISHFKVVLNDG-IRLTPHDFRLIFHTCTSVAESFDVRIPRNGWSF 122
           +S F V  + G  R T H ++++F   T V       IP  G S 
Sbjct: 78  MSCFSVAPSVGSYRTTLHPYKIVFQMTTKVQACEGASIPSLGISL 122


>G7IGJ6_MEDTR (tr|G7IGJ6) Replication protein A 70 kDa DNA-binding subunit
           OS=Medicago truncatula GN=MTR_2g048560 PE=4 SV=1
          Length = 549

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 3/112 (2%)

Query: 8   IDHVTSIQQRGRSWSIRVRAVAVWRIPFDHITLTPSCLDMILIDRRGTKIQASVCRR--H 65
           ID ++ I     +W+IRVR V +W +        P  L+M+L+D +G +I ASV R   +
Sbjct: 5   IDLISDISPSKENWNIRVRVVRLWFVRDMKKDQLPYSLEMVLMDNKGDRINASVRRTLIY 64

Query: 66  PITRPIEVGRVYNISHFKVVLNDG-IRLTPHDFRLIFHTCTSVAESFDVRIP 116
              + +   RV++I +F V  N G  R   H +++ F   T + +  D  +P
Sbjct: 65  KYEKELREDRVFSIGNFSVASNVGSYRTARHPYKINFQYGTKIKQCDDKFVP 116


>G7KPR0_MEDTR (tr|G7KPR0) Fgenesh protein OS=Medicago truncatula GN=MTR_6g069230
           PE=4 SV=1
          Length = 356

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 67/130 (51%), Gaps = 4/130 (3%)

Query: 16  QRGR-SWSIRVRAVAVWRIPFDHITLTPSCLDMILIDRRGTKIQASVCRR--HPITRPIE 72
           + GR +WS++VR + +W +    +    + L++IL+DR G KIQASV  +        +E
Sbjct: 108 KTGRMNWSVKVRLLRMWNVESSIVAGKVNSLELILLDREGNKIQASVPLQCIEVFNHILE 167

Query: 73  VGRVYNISHFKVVLNDGIRLTPHD-FRLIFHTCTSVAESFDVRIPRNGWSFYNTQIIRNR 131
             R Y  S F VV N    +T H+  RLIFH+ T V  +    I + G S + ++ I   
Sbjct: 168 ENRGYVFSDFHVVSNIADMMTTHNSHRLIFHSNTEVIFTDIPAIDKFGLSIHGSEAISKH 227

Query: 132 IVWELFLLLV 141
           +    +L+ V
Sbjct: 228 VFGYSYLVDV 237


>I3SCE2_LOTJA (tr|I3SCE2) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
          Length = 406

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 69/128 (53%), Gaps = 5/128 (3%)

Query: 7   AIDHVTSIQQRGRSWSIRVRAVAVWRIPFDHITLTPSCLDMILIDRRGTKIQASVCR--- 63
           AID V ++     +W I+VR V +W          P+ +++IL+D+ G KIQA+V +   
Sbjct: 6   AIDPVVTLCPPNHNWRIKVRVVRLWIADGFAGENKPASMELILLDQHGGKIQATVRKLMF 65

Query: 64  RHPITRPIEVGRVYNISHFKVVLNDGI-RLTPHDFRLIFHTCTSVAESFDVRIPRNGWSF 122
           R    + +E G VY I+ F ++ N G  R T H FR++F+  T +  +    IPR G+S 
Sbjct: 66  RKWGEQFVE-GNVYIITFFHLIPNLGAYRPTDHAFRILFNPKTKIIPAESSIIPRWGFSL 124

Query: 123 YNTQIIRN 130
            ++  + +
Sbjct: 125 KDSSQLND 132