Miyakogusa Predicted Gene

Lj1g3v3930430.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3930430.1 Non Chatacterized Hit- tr|I1ML78|I1ML78_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.34455
PE,83.84,0,HELICASE_ATP_BIND_1,Helicase, superfamily 1/2, ATP-binding
domain; HELICASE_CTER,Helicase, C-termina,CUFF.31512.1
         (820 letters)

Database: trembl 
           41,451,118 sequences; 13,208,986,710 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

I1ML78_SOYBN (tr|I1ML78) Uncharacterized protein OS=Glycine max ...  1370   0.0  
K7MXQ0_SOYBN (tr|K7MXQ0) Uncharacterized protein OS=Glycine max ...  1368   0.0  
F6H414_VITVI (tr|F6H414) Putative uncharacterized protein OS=Vit...  1315   0.0  
M4FHX8_BRARP (tr|M4FHX8) Uncharacterized protein OS=Brassica rap...  1299   0.0  
E4MX46_THEHA (tr|E4MX46) mRNA, clone: RTFL01-13-N09 OS=Thellungi...  1297   0.0  
R0GC11_9BRAS (tr|R0GC11) Uncharacterized protein OS=Capsella rub...  1295   0.0  
B9IA74_POPTR (tr|B9IA74) Predicted protein OS=Populus trichocarp...  1294   0.0  
D7L9I4_ARALL (tr|D7L9I4) Putative uncharacterized protein OS=Ara...  1291   0.0  
F4JFJ3_ARATH (tr|F4JFJ3) Putative DEAD/DEAH box helicase OS=Arab...  1288   0.0  
Q9SGA4_ARATH (tr|Q9SGA4) Putative DEAD/DEAH box helicase OS=Arab...  1288   0.0  
Q94JY9_ARATH (tr|Q94JY9) Putative helicase OS=Arabidopsis thalia...  1285   0.0  
Q8H0S6_ARATH (tr|Q8H0S6) Putative helicase OS=Arabidopsis thalia...  1284   0.0  
M5XIH5_PRUPE (tr|M5XIH5) Uncharacterized protein OS=Prunus persi...  1276   0.0  
K4BDQ4_SOLLC (tr|K4BDQ4) Uncharacterized protein OS=Solanum lyco...  1257   0.0  
B9RGU4_RICCO (tr|B9RGU4) Dead box ATP-dependent RNA helicase, pu...  1223   0.0  
B9GNF6_POPTR (tr|B9GNF6) Predicted protein OS=Populus trichocarp...  1217   0.0  
K3ZHH3_SETIT (tr|K3ZHH3) Uncharacterized protein OS=Setaria ital...   982   0.0  
Q2R377_ORYSJ (tr|Q2R377) CarD-like transcriptional regulator fam...   982   0.0  
C5Y3R0_SORBI (tr|C5Y3R0) Putative uncharacterized protein Sb05g0...   981   0.0  
A3CBY2_ORYSJ (tr|A3CBY2) Putative uncharacterized protein OS=Ory...   981   0.0  
I1ILE1_BRADI (tr|I1ILE1) Uncharacterized protein OS=Brachypodium...   972   0.0  
F2DG37_HORVD (tr|F2DG37) Predicted protein OS=Hordeum vulgare va...   971   0.0  
Q2HRX1_MEDTR (tr|Q2HRX1) Helicase, C-terminal; Haem peroxidase, ...   939   0.0  
Q2R378_ORYSJ (tr|Q2R378) CarD-like transcriptional regulator fam...   932   0.0  
J3N8T5_ORYBR (tr|J3N8T5) Uncharacterized protein OS=Oryza brachy...   919   0.0  
A2ZEZ1_ORYSI (tr|A2ZEZ1) Putative uncharacterized protein OS=Ory...   913   0.0  
G7KY98_MEDTR (tr|G7KY98) Transcription-repair-coupling factor OS...   907   0.0  
Q0ISD4_ORYSJ (tr|Q0ISD4) Os11g0533100 protein (Fragment) OS=Oryz...   890   0.0  
B7F5N3_ORYSJ (tr|B7F5N3) CarD-like transcriptional regulator fam...   844   0.0  
A9S9T2_PHYPA (tr|A9S9T2) Uncharacterized protein OS=Physcomitrel...   843   0.0  
D8R247_SELML (tr|D8R247) Putative uncharacterized protein OS=Sel...   770   0.0  
D8QSX3_SELML (tr|D8QSX3) Putative uncharacterized protein OS=Sel...   762   0.0  
M0TRK5_MUSAM (tr|M0TRK5) Uncharacterized protein OS=Musa acumina...   691   0.0  
K9XWW4_STAC7 (tr|K9XWW4) Transcription-repair coupling factor (P...   579   e-162
K9WCW6_9CYAN (tr|K9WCW6) Transcription-repair coupling factor Mf...   577   e-161
B4WRL4_9SYNE (tr|B4WRL4) Transcription-repair coupling factor OS...   575   e-161
K9T876_9CYAN (tr|K9T876) Transcription-repair coupling factor Mf...   574   e-161
Q8DKA7_THEEB (tr|Q8DKA7) Transcription-repair coupling factor OS...   573   e-160
B8HS88_CYAP4 (tr|B8HS88) Transcription-repair coupling factor OS...   573   e-160
L8M3X5_9CYAN (tr|L8M3X5) Transcription-repair coupling factor Mf...   573   e-160
F7UST4_SYNYG (tr|F7UST4) Transcription-repair coupling factor OS...   573   e-160
L8APW1_9SYNC (tr|L8APW1) Transcription-repair coupling factor OS...   573   e-160
H0PGJ8_9SYNC (tr|H0PGJ8) Transcription-repair coupling factor OS...   573   e-160
H0PBL5_9SYNC (tr|H0PBL5) Transcription-repair coupling factor OS...   573   e-160
H0NZ63_9SYNC (tr|H0NZ63) Transcription-repair coupling factor OS...   573   e-160
B4VR37_9CYAN (tr|B4VR37) Transcription-repair coupling factor OS...   572   e-160
M1MLV2_9SYNC (tr|M1MLV2) Transcription-repair coupling factor OS...   572   e-160
K8GNU7_9CYAN (tr|K8GNU7) Transcription-repair coupling factor Mf...   570   e-160
B7KI22_CYAP7 (tr|B7KI22) Transcription-repair coupling factor OS...   568   e-159
F4XL60_9CYAN (tr|F4XL60) Transcription-repair coupling factor mf...   567   e-159
K9U0V8_9CYAN (tr|K9U0V8) Transcription-repair coupling factor (P...   566   e-159
K9RAH1_9CYAN (tr|K9RAH1) Transcription-repair coupling factor Mf...   566   e-158
K9ENJ0_9CYAN (tr|K9ENJ0) Transcription-repair coupling factor Mf...   565   e-158
B0CBL0_ACAM1 (tr|B0CBL0) Transcription-repair coupling factor OS...   565   e-158
E0UIE9_CYAP2 (tr|E0UIE9) Transcription-repair coupling factor OS...   564   e-158
A0YJ76_LYNSP (tr|A0YJ76) Transcription-repair coupling factor OS...   564   e-158
C7QTV1_CYAP0 (tr|C7QTV1) Transcription-repair coupling factor OS...   563   e-158
B7JVA1_CYAP8 (tr|B7JVA1) Transcription-repair coupling factor OS...   562   e-157
K9SA68_9CYAN (tr|K9SA68) Transcription-repair coupling factor (P...   562   e-157
L8LAU9_9CYAN (tr|L8LAU9) Transcription-repair coupling factor Mf...   562   e-157
K9XEM4_9CHRO (tr|K9XEM4) Transcription-repair coupling factor OS...   561   e-157
Q4C6S8_CROWT (tr|Q4C6S8) Transcription-repair coupling factor OS...   561   e-157
A3IN91_9CHRO (tr|A3IN91) Transcription-repair coupling factor OS...   561   e-157
K9PYZ4_9CYAN (tr|K9PYZ4) Transcription-repair coupling factor OS...   561   e-157
K9YE83_HALP7 (tr|K9YE83) Transcription-repair coupling factor OS...   561   e-157
K9RQ24_SYNP3 (tr|K9RQ24) Transcription-repair coupling factor Mf...   560   e-157
Q2JM65_SYNJB (tr|Q2JM65) Transcription-repair coupling factor OS...   560   e-156
K9QZF8_NOSS7 (tr|K9QZF8) Transcription-repair coupling factor Mf...   560   e-156
G6FMB4_9CYAN (tr|G6FMB4) Transcription-repair coupling factor OS...   560   e-156
K9PTH7_9CYAN (tr|K9PTH7) Transcription-repair coupling factor OS...   559   e-156
B1X1M8_CYAA5 (tr|B1X1M8) Transcription-repair coupling factor OS...   559   e-156
G6GSW5_9CHRO (tr|G6GSW5) Transcription-repair coupling factor OS...   559   e-156
Q3M9F6_ANAVT (tr|Q3M9F6) Transcription-repair coupling factor OS...   558   e-156
K9QIG9_9NOSO (tr|K9QIG9) Transcription-repair coupling factor OS...   558   e-156
K9VXQ1_9CYAN (tr|K9VXQ1) Transcription-repair coupling factor OS...   558   e-156
K9VC73_9CYAN (tr|K9VC73) Transcription-repair coupling factor OS...   558   e-156
Q2JTR6_SYNJA (tr|Q2JTR6) Transcription-repair coupling factor OS...   558   e-156
I4GX20_MICAE (tr|I4GX20) Transcription-repair-coupling factor OS...   557   e-156
I4IB81_9CHRO (tr|I4IB81) Transcription-repair-coupling factor OS...   557   e-156
K7WHG1_9NOST (tr|K7WHG1) Transcription-repair coupling factor OS...   556   e-155
I4IK85_MICAE (tr|I4IK85) Transcription-repair-coupling factor OS...   556   e-155
K9X4X0_9NOST (tr|K9X4X0) Transcription-repair coupling factor Mf...   556   e-155
Q8YLT1_NOSS1 (tr|Q8YLT1) Transcriptional-repair coupling factor ...   555   e-155
I4HJZ0_MICAE (tr|I4HJZ0) Transcription-repair-coupling factor OS...   555   e-155
I4HCG3_MICAE (tr|I4HCG3) Transcription-repair-coupling factor OS...   555   e-155
F5UL21_9CYAN (tr|F5UL21) Transcription-repair coupling factor OS...   555   e-155
K9YIQ1_CYASC (tr|K9YIQ1) Transcription-repair coupling factor OS...   555   e-155
I4FDU4_MICAE (tr|I4FDU4) Transcription-repair-coupling factor OS...   554   e-155
L7E4R1_MICAE (tr|L7E4R1) Transcription-repair coupling factor OS...   553   e-155
I4G3Q4_MICAE (tr|I4G3Q4) Transcription-repair-coupling factor OS...   553   e-154
A0ZKE2_NODSP (tr|A0ZKE2) Transcriptional-repair coupling factor ...   553   e-154
K9YSA2_DACSA (tr|K9YSA2) Transcription-repair coupling factor Mf...   552   e-154
B0JXS5_MICAN (tr|B0JXS5) Transcription-repair coupling factor OS...   552   e-154
L8NUS3_MICAE (tr|L8NUS3) Transcription-repair coupling factor OS...   552   e-154
I4I0A3_MICAE (tr|I4I0A3) Transcription-repair-coupling factor OS...   552   e-154
I4FXH2_MICAE (tr|I4FXH2) Transcription-repair-coupling factor OS...   552   e-154
K9UYR9_9CYAN (tr|K9UYR9) Transcription-repair coupling factor (P...   552   e-154
K9THB9_9CYAN (tr|K9THB9) Transcription-repair coupling factor Mf...   552   e-154
I4GDY9_MICAE (tr|I4GDY9) Transcription-repair-coupling factor OS...   552   e-154
A5GU09_SYNR3 (tr|A5GU09) Transcription-repair coupling factor OS...   552   e-154
K9ZNN6_ANACC (tr|K9ZNN6) Transcription-repair coupling factor OS...   552   e-154
L8KT32_9SYNC (tr|L8KT32) Transcription-repair coupling factor Mf...   551   e-154
L8LXB3_9CHRO (tr|L8LXB3) Transcription-repair coupling factor Mf...   551   e-154
Q31NL3_SYNE7 (tr|Q31NL3) Transcription-repair coupling factor OS...   550   e-154
Q3AXP6_SYNS9 (tr|Q3AXP6) Transcription-repair coupling factor OS...   550   e-154
B2J5R8_NOSP7 (tr|B2J5R8) Transcription-repair coupling factor OS...   549   e-153
B1XL29_SYNP2 (tr|B1XL29) Transcription-repair coupling factor (T...   549   e-153
Q066U1_9SYNE (tr|Q066U1) Transcription-repair coupling factor OS...   548   e-153
K9SLG5_9CYAN (tr|K9SLG5) Transcription-repair coupling factor (P...   548   e-153
Q5N5K1_SYNP6 (tr|Q5N5K1) Transcription-repair coupling factor OS...   546   e-152
D7DWQ6_NOSA0 (tr|D7DWQ6) Transcription-repair coupling factor OS...   546   e-152
K1VVJ2_SPIPL (tr|K1VVJ2) Transcription-repair coupling factor OS...   546   e-152
B5W2G2_SPIMA (tr|B5W2G2) Transcription-repair coupling factor OS...   546   e-152
Q7U709_SYNPX (tr|Q7U709) Transcriptional-repair coupling factor ...   545   e-152
A3ZAV0_9SYNE (tr|A3ZAV0) Transcriptional-repair coupling factor ...   545   e-152
H1WGN5_9CYAN (tr|H1WGN5) Transcription-repair-coupling factor OS...   545   e-152
K9P3C5_CYAGP (tr|K9P3C5) Transcription-repair coupling factor Mf...   545   e-152
D4ZXG2_SPIPL (tr|D4ZXG2) Transcriptional-repair coupling factor ...   544   e-152
K6E281_SPIPL (tr|K6E281) Transcription-repair coupling factor OS...   543   e-152
A3YY58_9SYNE (tr|A3YY58) Transcription-repair coupling factor OS...   543   e-151
M1X2W9_9NOST (tr|M1X2W9) Transcription-repair coupling factor OS...   543   e-151
A2C299_PROM1 (tr|A2C299) Transcriptional-repair coupling factor ...   543   e-151
Q7V7H1_PROMM (tr|Q7V7H1) Transcriptional-repair coupling factor ...   543   e-151
Q3AK28_SYNSC (tr|Q3AK28) Transcription-repair coupling factor OS...   542   e-151
K9UG52_9CHRO (tr|K9UG52) Transcription-repair coupling factor Mf...   542   e-151
Q05SQ5_9SYNE (tr|Q05SQ5) Transcriptional-repair coupling factor ...   542   e-151
K9SS77_9SYNE (tr|K9SS77) Transcription-repair coupling factor Mf...   542   e-151
L8N0S9_9CYAN (tr|L8N0S9) Transcription-repair coupling factor OS...   541   e-151
D0CIV8_9SYNE (tr|D0CIV8) Transcription-repair coupling factor OS...   541   e-151
A2C9M3_PROM3 (tr|A2C9M3) Transcriptional-repair coupling factor ...   541   e-151
Q46KW7_PROMT (tr|Q46KW7) Transcription-repair coupling factor OS...   541   e-151
D8G7K2_9CYAN (tr|D8G7K2) Transcription-repair-coupling factor OS...   541   e-151
K9Z1Q9_CYAAP (tr|K9Z1Q9) Transcription-repair coupling factor OS...   541   e-151
B5II16_9CHRO (tr|B5II16) Transcription-repair coupling factor OS...   540   e-151
Q114Y2_TRIEI (tr|Q114Y2) Transcription-repair coupling factor OS...   540   e-151
D4THN2_9NOST (tr|D4THN2) Transcription-repair coupling factor OS...   539   e-150
A5GLU1_SYNPW (tr|A5GLU1) Transcription-repair coupling factor OS...   539   e-150
A4CVE4_SYNPV (tr|A4CVE4) Transcriptional-repair coupling factor ...   538   e-150
D4TQP3_9NOST (tr|D4TQP3) Transcription-repair coupling factor OS...   537   e-150
Q7NEP2_GLOVI (tr|Q7NEP2) Transcription-repair coupling factor OS...   537   e-150
G4FLI9_9SYNE (tr|G4FLI9) Transcription-repair coupling factor OS...   536   e-149
Q0I9I9_SYNS3 (tr|Q0I9I9) Transcription-repair coupling factor OS...   535   e-149
Q7VBU2_PROMA (tr|Q7VBU2) Transcription-repair coupling factor OS...   532   e-148
A9BAJ6_PROM4 (tr|A9BAJ6) Transcriptional-repair coupling factor ...   528   e-147
A2BRA3_PROMS (tr|A2BRA3) Transcriptional-repair coupling factor ...   528   e-147
A4RX81_OSTLU (tr|A4RX81) Predicted protein OS=Ostreococcus lucim...   528   e-147
B9P217_PROMR (tr|B9P217) Transcription-repair coupling factor OS...   525   e-146
D3EMV7_UCYNA (tr|D3EMV7) Transcription-repair coupling factor OS...   524   e-146
A8G4Z6_PROM2 (tr|A8G4Z6) Transcriptional-repair coupling factor ...   523   e-145
Q31AS4_PROM9 (tr|Q31AS4) Transcription-repair coupling factor OS...   522   e-145
A3PD28_PROM0 (tr|A3PD28) Transcriptional-repair coupling factor ...   522   e-145
C1FDV6_MICSR (tr|C1FDV6) Predicted protein (Fragment) OS=Micromo...   508   e-141
A2BWG1_PROM5 (tr|A2BWG1) Transcriptional-repair coupling factor ...   506   e-140
L8N3C7_9CYAN (tr|L8N3C7) Transcription-repair coupling factor OS...   504   e-140
Q019N9_OSTTA (tr|Q019N9) Putative helicase (ISS) OS=Ostreococcus...   503   e-139
Q7V1M5_PROMP (tr|Q7V1M5) Transcriptional-repair coupling factor ...   503   e-139
K8ELQ7_9CHLO (tr|K8ELQ7) Transcription-repair coupling factor OS...   502   e-139
M8B2D2_AEGTA (tr|M8B2D2) Transcription-repair-coupling factor OS...   490   e-136
M7ZWH7_TRIUA (tr|M7ZWH7) Transcription-repair-coupling factor OS...   483   e-133
L8MUF7_9CYAN (tr|L8MUF7) Transcription-repair coupling factor OS...   482   e-133
R7I1W5_9CLOT (tr|R7I1W5) Transcription-repair coupling factor OS...   479   e-132
B9E8U8_MACCJ (tr|B9E8U8) Transcription-repair coupling factor OS...   477   e-132
K2DWK7_9BACT (tr|K2DWK7) Uncharacterized protein OS=uncultured b...   476   e-131
F8F0Q4_SPICH (tr|F8F0Q4) Transcription-repair coupling factor OS...   475   e-131
L0EKE1_THECK (tr|L0EKE1) Transcription-repair coupling factor Mf...   473   e-130
C2D1P6_LACBR (tr|C2D1P6) Transcription-repair coupling factor OS...   472   e-130
G8TWA6_SULAD (tr|G8TWA6) Transcription-repair coupling factor (P...   471   e-130
F8I4F7_SULAT (tr|F8I4F7) Transcription-repair coupling factor OS...   471   e-130
C0XFV1_LACHI (tr|C0XFV1) Transcription-repair coupling factor OS...   471   e-130
C0WQN6_LACBU (tr|C0WQN6) Transcription-repair coupling factor OS...   470   e-130
E8UTS1_THEBF (tr|E8UTS1) Transcription-repair coupling factor OS...   469   e-129
B0KBG3_THEP3 (tr|B0KBG3) Transcription-repair coupling factor OS...   469   e-129
C8PQM7_9SPIO (tr|C8PQM7) Transcription-repair coupling factor OS...   468   e-129
F2NRS4_TRES6 (tr|F2NRS4) Transcription-repair coupling factor OS...   468   e-129
K4KZ44_9FIRM (tr|K4KZ44) Transcription-repair coupling factor OS...   467   e-129
K4KSY0_9FIRM (tr|K4KSY0) Transcription-repair coupling factor OS...   467   e-129
G9ZQ61_9LACO (tr|G9ZQ61) Transcription-repair coupling factor OS...   467   e-129
E7NW30_TREPH (tr|E7NW30) Transcription-repair coupling factor OS...   467   e-129
K8N453_STASI (tr|K8N453) Transcription-repair-coupling factor OS...   467   e-129
H9UJ40_SPIAZ (tr|H9UJ40) Transcription-repair coupling factor Mf...   467   e-128
R6Z7N9_9ACTN (tr|R6Z7N9) Transcription-repair coupling factor OS...   466   e-128
B9DLC6_STACT (tr|B9DLC6) Putative transcription-repair coupling ...   466   e-128
R6MMT9_9FIRM (tr|R6MMT9) Transcription-repair coupling factor OS...   465   e-128
R9L467_9BACL (tr|R9L467) Transcription-repair coupling factor OS...   465   e-128
K4LLL5_THEPS (tr|K4LLL5) Transcription-repair-coupling factor Mf...   465   e-128
R5P401_9FIRM (tr|R5P401) Transcription-repair coupling factor OS...   464   e-128
G2MU69_9THEO (tr|G2MU69) Transcription-repair coupling factor OS...   464   e-128
H7EMA2_9SPIO (tr|H7EMA2) Transcription-repair coupling factor OS...   464   e-128
C6J5E9_9BACL (tr|C6J5E9) Transcription-repair coupling factor OS...   464   e-128
F1ZWE5_THEET (tr|F1ZWE5) Transcription-repair coupling factor OS...   464   e-128
D9SKQ1_CLOC7 (tr|D9SKQ1) Transcription-repair coupling factor OS...   463   e-127
R7I0J1_9CLOT (tr|R7I0J1) Transcription-repair coupling factor OS...   463   e-127
H5XRP8_9FIRM (tr|H5XRP8) Transcription-repair coupling factor Mf...   463   e-127
R6MUX3_9CLOT (tr|R6MUX3) Transcription-repair coupling factor OS...   463   e-127
M0TRK4_MUSAM (tr|M0TRK4) Uncharacterized protein OS=Musa acumina...   463   e-127
G4HP16_9BACL (tr|G4HP16) Transcription-repair coupling factor (P...   463   e-127
F3SNI1_STAWA (tr|F3SNI1) Transcription-repair coupling factor OS...   462   e-127
J7IPS3_DESMD (tr|J7IPS3) Transcription-repair coupling factor Mf...   462   e-127
L7X1V7_STAWS (tr|L7X1V7) Transcription-repair coupling factor OS...   462   e-127
R7LW11_9FUSO (tr|R7LW11) Transcription-repair coupling factor OS...   462   e-127
C6CRK3_PAESJ (tr|C6CRK3) Transcription-repair coupling factor OS...   461   e-127
D7AT15_THEM3 (tr|D7AT15) Transcription-repair coupling factor OS...   461   e-127
I9MWC7_9FIRM (tr|I9MWC7) Transcription-repair coupling factor OS...   461   e-127
I9MQ15_9FIRM (tr|I9MQ15) Transcription-repair coupling factor OS...   461   e-127
I9MGF5_9FIRM (tr|I9MGF5) Transcription-repair coupling factor OS...   461   e-127
I9LGA3_9FIRM (tr|I9LGA3) Transcription-repair coupling factor OS...   461   e-127
I8RUU3_9FIRM (tr|I8RUU3) Transcription-repair coupling factor OS...   461   e-127
G7LXI6_9CLOT (tr|G7LXI6) Transcription-repair coupling factor OS...   461   e-127
Q034V2_LACC3 (tr|Q034V2) Transcription-repair coupling factor OS...   461   e-127
K6RMU2_LACCA (tr|K6RMU2) Transcription-repair coupling factor OS...   461   e-127
E1T145_THESX (tr|E1T145) Transcription-repair coupling factor OS...   460   e-127
B0K468_THEPX (tr|B0K468) Transcription-repair coupling factor OS...   460   e-127
E1FA14_9THEO (tr|E1FA14) Transcription-repair coupling factor OS...   460   e-127
E0I948_9BACL (tr|E0I948) Transcription-repair coupling factor (P...   460   e-127
R6P3R9_9CLOT (tr|R6P3R9) Transcription-repair coupling factor OS...   460   e-127
A3DIQ2_CLOTH (tr|A3DIQ2) Transcription-repair coupling factor OS...   460   e-127
E6UQV6_CLOTL (tr|E6UQV6) Transcription-repair coupling factor OS...   460   e-126
H8EPN3_CLOTM (tr|H8EPN3) Transcription-repair coupling factor OS...   460   e-126
H8EEZ7_CLOTM (tr|H8EEZ7) Transcription-repair coupling factor OS...   460   e-126
C7HBM5_CLOTM (tr|C7HBM5) Transcription-repair coupling factor OS...   460   e-126
R5DWM2_9CLOT (tr|R5DWM2) Transcription-repair coupling factor OS...   460   e-126
B8D013_HALOH (tr|B8D013) Transcription-repair coupling factor OS...   460   e-126
K6SC65_LACCA (tr|K6SC65) Transcription-repair coupling factor OS...   460   e-126
K6R5X9_LACCA (tr|K6R5X9) Transcription-repair coupling factor OS...   460   e-126
K6QX37_LACCA (tr|K6QX37) Transcription-repair coupling factor OS...   460   e-126
K6Q8H2_LACCA (tr|K6Q8H2) Transcription-repair coupling factor OS...   460   e-126
K6P585_LACCA (tr|K6P585) Transcription-repair coupling factor OS...   460   e-126
D1NPC5_CLOTM (tr|D1NPC5) Transcription-repair coupling factor OS...   460   e-126
K6Q7T8_LACCA (tr|K6Q7T8) Transcription-repair coupling factor OS...   460   e-126
C5F6L4_LACPA (tr|C5F6L4) Transcription-repair coupling factor OS...   459   e-126
K6TA45_LACCA (tr|K6TA45) Transcription-repair coupling factor OS...   459   e-126
K6QWE6_LACCA (tr|K6QWE6) Transcription-repair coupling factor OS...   459   e-126
F3M920_9BACL (tr|F3M920) Transcription-repair coupling factor OS...   459   e-126
K6S157_LACCA (tr|K6S157) Transcription-repair coupling factor OS...   459   e-126
K6RFY9_LACCA (tr|K6RFY9) Transcription-repair coupling factor OS...   459   e-126
K6S1K7_LACCA (tr|K6S1K7) Transcription-repair coupling factor OS...   459   e-126
M1M7K1_9CLOT (tr|M1M7K1) Transcription-repair-coupling factor Mf...   459   e-126
G1UBP7_LACCC (tr|G1UBP7) Transcription-repair coupling factor OS...   459   e-126
F2ML83_LACCD (tr|F2ML83) Transcription-repair coupling factor OS...   459   e-126
B3WAP6_LACCB (tr|B3WAP6) Transcription-repair coupling factor (T...   459   e-126
K0MXW9_LACCA (tr|K0MXW9) Transcription-repair-coupling factor OS...   459   e-126
B5QT76_LACCA (tr|B5QT76) Transcriptional-repair coupling factor ...   459   e-126
Q0B0S4_SYNWW (tr|Q0B0S4) Transcription-repair coupling factor-su...   459   e-126
E5YPY3_9BACL (tr|E5YPY3) Transcription-repair coupling factor OS...   459   e-126
C2F9S2_LACPA (tr|C2F9S2) Transcription-repair coupling factor (T...   459   e-126
D8GCN9_LACCZ (tr|D8GCN9) Transcription-repair coupling factor (S...   459   e-126
C4WBZ1_STAWA (tr|C4WBZ1) Transcription-repair coupling factor OS...   459   e-126
R7MFE0_9CLOT (tr|R7MFE0) Transcription-repair coupling factor OS...   459   e-126
F4LMN0_TREBD (tr|F4LMN0) Transcription-repair coupling factor OS...   459   e-126
D3E756_GEOS4 (tr|D3E756) Transcription-repair coupling factor OS...   459   e-126
R5SC42_9GAMM (tr|R5SC42) Transcription-repair coupling factor OS...   459   e-126
F5L9Z4_9BACI (tr|F5L9Z4) Transcription-repair coupling factor (P...   459   e-126
G7W7E9_DESOD (tr|G7W7E9) Transcription-repair coupling factor Mf...   458   e-126
A1HRU9_9FIRM (tr|A1HRU9) Transcription-repair coupling factor OS...   458   e-126
A4J0Q8_DESRM (tr|A4J0Q8) Transcription-repair coupling factor OS...   458   e-126
G8M1Y3_CLOCD (tr|G8M1Y3) Transcription-repair coupling factor Mf...   457   e-126
G1WIM5_9ACTN (tr|G1WIM5) Putative uncharacterized protein OS=Col...   457   e-126
R5GJW5_9FIRM (tr|R5GJW5) Transcription-repair coupling factor OS...   457   e-126
C5QLK3_STAEP (tr|C5QLK3) Transcription-repair coupling factor OS...   457   e-125
F2F186_SOLSS (tr|F2F186) Transcription-repair coupling factor OS...   457   e-125
D6T2H5_GARVA (tr|D6T2H5) Transcription-repair coupling factor OS...   457   e-125
D6SY59_GARVA (tr|D6SY59) Transcription-repair coupling factor OS...   456   e-125
B1H078_UNCTG (tr|B1H078) Transcription-repair coupling factor Mf...   456   e-125
I8TZW6_9FIRM (tr|I8TZW6) Transcription-repair coupling factor OS...   456   e-125
I4LP22_GARVA (tr|I4LP22) Transcription-repair coupling factor OS...   456   e-125
E5CPG4_9STAP (tr|E5CPG4) Transcription-repair coupling factor OS...   456   e-125
E3DQ95_HALPG (tr|E3DQ95) Transcription-repair coupling factor (P...   456   e-125
M7N8X5_9BACL (tr|M7N8X5) Transcription-repair-coupling factor OS...   456   e-125
D2RAQ2_GARV4 (tr|D2RAQ2) Transcription-repair coupling factor OS...   456   e-125
M2BJH2_TREDN (tr|M2BJH2) Transcription-repair coupling factor OS...   456   e-125
M2C4J2_TREDN (tr|M2C4J2) Transcription-repair coupling factor OS...   456   e-125
M2BIR1_TREDN (tr|M2BIR1) Transcription-repair coupling factor OS...   456   e-125
M2S2M8_TREDN (tr|M2S2M8) Transcription-repair coupling factor OS...   456   e-125
M2D2U3_TREDN (tr|M2D2U3) Transcription-repair coupling factor OS...   456   e-125
M2ADT1_TREDN (tr|M2ADT1) Transcription-repair coupling factor OS...   456   e-125
M2AAX5_TREDN (tr|M2AAX5) Transcription-repair coupling factor OS...   456   e-125
L0K7M1_HALHC (tr|L0K7M1) Transcription-repair coupling factor Mf...   456   e-125
M2BU55_TREDN (tr|M2BU55) Transcription-repair coupling factor OS...   456   e-125
B9CVC5_STACP (tr|B9CVC5) Transcription-repair coupling factor OS...   456   e-125
Q73N68_TREDE (tr|Q73N68) Transcription-repair coupling factor OS...   456   e-125
M2BZ41_TREDN (tr|M2BZ41) Transcription-repair coupling factor OS...   456   e-125
M2BMA2_TREDN (tr|M2BMA2) Transcription-repair coupling factor OS...   456   e-125
F9L6X3_STACP (tr|F9L6X3) Transcription-repair coupling factor OS...   456   e-125
M2DJ09_TREDN (tr|M2DJ09) Transcription-repair coupling factor OS...   455   e-125
H1PNI2_9FIRM (tr|H1PNI2) Transcription-repair coupling factor OS...   455   e-125
A3J3N7_9FLAO (tr|A3J3N7) Transcription-repair coupling factor OS...   455   e-125
H0DKL2_9STAP (tr|H0DKL2) Transcription-repair coupling factor OS...   455   e-125
G2FQU4_9FIRM (tr|G2FQU4) Transcription-repair coupling factor OS...   455   e-125
A9KR33_CLOPH (tr|A9KR33) Transcription-repair coupling factor OS...   455   e-125
R6S0P7_9FIRM (tr|R6S0P7) Transcription-repair coupling factor OS...   455   e-125
M2C360_TREDN (tr|M2C360) Transcription-repair coupling factor OS...   455   e-125
D3T5S1_THEIA (tr|D3T5S1) Transcription-repair coupling factor OS...   455   e-125
K1LH66_9BACI (tr|K1LH66) Transcription-repair-coupling factor OS...   455   e-125
Q181A0_CLOD6 (tr|Q181A0) Transcription-repair coupling factor (T...   455   e-125
G6BVK3_CLODI (tr|G6BVK3) Transcription-repair coupling factor OS...   455   e-125
G6BL84_CLODI (tr|G6BL84) Transcription-repair coupling factor OS...   455   e-125
G6B3L1_CLODI (tr|G6B3L1) Transcription-repair coupling factor OS...   455   e-125
R6EEQ8_9CLOT (tr|R6EEQ8) Transcription-repair coupling factor OS...   455   e-125
F0SW84_SYNGF (tr|F0SW84) Transcription-repair coupling factor OS...   454   e-125
C9YRX0_CLODR (tr|C9YRX0) Transcription-repair coupling factor OS...   454   e-125
C9XSA5_CLODC (tr|C9XSA5) Transcription-repair coupling factor OS...   454   e-125
R7D609_9ACTN (tr|R7D609) Transcription-repair coupling factor OS...   454   e-125
F4A1G2_MAHA5 (tr|F4A1G2) Transcription-repair coupling factor OS...   454   e-125
D5S1E1_CLODI (tr|D5S1E1) Transcription-repair coupling factor OS...   454   e-125
D5PZK6_CLODI (tr|D5PZK6) Transcription-repair coupling factor OS...   454   e-125
B6G0J9_9FIRM (tr|B6G0J9) Putative uncharacterized protein OS=Clo...   454   e-125
R5DWN8_9FIRM (tr|R5DWN8) Transcription-repair coupling factor (S...   454   e-125
F9N5B9_9FIRM (tr|F9N5B9) Transcription-repair coupling factor OS...   454   e-125
G7ZRZ3_STAAU (tr|G7ZRZ3) Transcription-repair-coupling factor OS...   454   e-125
D7UUI1_LISGR (tr|D7UUI1) Transcription-repair coupling factor OS...   454   e-125
K2B5T7_9BACT (tr|K2B5T7) Uncharacterized protein (Fragment) OS=u...   454   e-125
R5J020_9FIRM (tr|R5J020) Transcription-repair coupling factor OS...   454   e-125
E1R4B2_SPISS (tr|E1R4B2) Transcription-repair coupling factor OS...   454   e-124
D6GRR8_FILAD (tr|D6GRR8) Transcription-repair coupling factor OS...   454   e-124
H3SJK0_9BACL (tr|H3SJK0) Transcription-repair coupling factor OS...   453   e-124
G7VUX7_PAETH (tr|G7VUX7) Transcription-repair coupling factor (T...   453   e-124
B2A3P0_NATTJ (tr|B2A3P0) Transcription-repair coupling factor OS...   453   e-124
I0X5Y4_9SPIO (tr|I0X5Y4) Transcription-repair coupling factor (M...   453   e-124
R6G373_9FIRM (tr|R6G373) Transcription-repair coupling factor OS...   453   e-124
C0EYJ5_9FIRM (tr|C0EYJ5) Transcription-repair coupling factor OS...   453   e-124
I7LI68_9CLOT (tr|I7LI68) Transcription-repair coupling factor OS...   453   e-124
R5S2L1_9CLOT (tr|R5S2L1) Transcription-repair coupling factor OS...   453   e-124
R5G2W8_9ACTN (tr|R5G2W8) Transcription-repair coupling factor OS...   453   e-124
H3NBX3_9LACT (tr|H3NBX3) Transcription-repair coupling factor OS...   453   e-124
D3MQM7_9FIRM (tr|D3MQM7) Transcription-repair coupling factor OS...   453   e-124
L1MPU1_9FIRM (tr|L1MPU1) Transcription-repair coupling factor OS...   453   e-124
K6U3V5_9CLOT (tr|K6U3V5) Transcription-repair coupling factor Mf...   453   e-124
K4Z969_PAEAL (tr|K4Z969) Transcription-repair-coupling factor Mf...   453   e-124
R5Z8M3_9FIRM (tr|R5Z8M3) Transcription-repair coupling factor OS...   453   e-124
A6LPJ6_CLOB8 (tr|A6LPJ6) Transcription-repair coupling factor OS...   453   e-124
M8CZK9_THETY (tr|M8CZK9) Transcription-repair coupling factor (M...   452   e-124
I9ADI7_9THEO (tr|I9ADI7) Transcription-repair coupling factor Mf...   452   e-124
R5P7C5_9CLOT (tr|R5P7C5) Transcription-repair coupling factor OS...   452   e-124
I4D052_DESAJ (tr|I4D052) Transcription-repair coupling factor Mf...   452   e-124
K0NF38_9LACO (tr|K0NF38) Transcription-repair coupling factor OS...   452   e-124
R7JXG7_9CLOT (tr|R7JXG7) Transcription-repair coupling factor OS...   452   e-124
H6CC67_9BACL (tr|H6CC67) Transcription-repair coupling factor OS...   452   e-124
K0NUF2_9LACO (tr|K0NUF2) Transcription-repair coupling factor OS...   452   e-124
K1MRH6_9LACT (tr|K1MRH6) Transcription-repair coupling factor OS...   452   e-124
E3EDW5_PAEPS (tr|E3EDW5) Transcription-repair coupling factor OS...   452   e-124
G0VVF0_PAEPO (tr|G0VVF0) Transcription-repair-coupling factor TR...   452   e-124
F0P925_STAPE (tr|F0P925) Transcription-repair coupling factor OS...   452   e-124
E8SIN9_STAPH (tr|E8SIN9) Transcription-repair coupling factor OS...   452   e-124
L1Q3L3_9FIRM (tr|L1Q3L3) Transcription-repair coupling factor OS...   452   e-124
B0NYB3_9CLOT (tr|B0NYB3) Transcription-repair coupling factor OS...   452   e-124
I7IM15_9STAP (tr|I7IM15) Transcription-repair-coupling factor OS...   451   e-124
R7IIZ9_9FIRM (tr|R7IIZ9) Transcription-repair coupling factor OS...   451   e-124
R5ZV71_9FIRM (tr|R5ZV71) Transcription-repair coupling factor (S...   451   e-124
R7JB01_9FUSO (tr|R7JB01) Transcription-repair coupling factor OS...   451   e-124
M5J5N4_9LACO (tr|M5J5N4) Transcription-repair coupling factor OS...   451   e-124
R6QMD9_9FIRM (tr|R6QMD9) Transcription-repair coupling factor OS...   451   e-124
E5VSB8_9FIRM (tr|E5VSB8) Transcription-repair coupling factor OS...   451   e-124
B0MFR4_9FIRM (tr|B0MFR4) Transcription-repair coupling factor OS...   451   e-124
F2I7P8_AERUA (tr|F2I7P8) Transcription-repair coupling factor OS...   451   e-124
D7CIP3_SYNLT (tr|D7CIP3) Transcription-repair coupling factor OS...   451   e-124
I4X2C9_9BACL (tr|I4X2C9) Transcription-repair coupling factor OS...   451   e-124
J9H5V4_9STAP (tr|J9H5V4) Transcription-repair coupling factor OS...   451   e-124
R6VTI3_9FIRM (tr|R6VTI3) Transcription-repair coupling factor OS...   451   e-124
C9RA21_AMMDK (tr|C9RA21) Transcription-repair coupling factor OS...   451   e-124
R5K5Y7_9CLOT (tr|R5K5Y7) Transcription-repair coupling factor OS...   451   e-124
E7RLD0_9BACL (tr|E7RLD0) Transcription-repair coupling factor OS...   451   e-124
C8WQR7_ALIAD (tr|C8WQR7) Transcription-repair coupling factor OS...   451   e-124
I3EC39_BACMT (tr|I3EC39) Transcription-repair coupling factor OS...   451   e-124
G6GJT1_9FIRM (tr|G6GJT1) Transcription-repair coupling factor OS...   451   e-124
A8MK41_ALKOO (tr|A8MK41) Transcription-repair coupling factor OS...   451   e-124
I4A3Q9_DESDJ (tr|I4A3Q9) Transcription-repair coupling factor Mf...   451   e-124
G4NTC3_BACPN (tr|G4NTC3) Transcription-repair coupling factor OS...   451   e-124
R7C320_9FIRM (tr|R7C320) Transcription-repair coupling factor OS...   451   e-124
D4J7J5_9FIRM (tr|D4J7J5) Transcription-repair coupling factor OS...   450   e-124
F8IJN4_ALIAT (tr|F8IJN4) Transcription-repair coupling factor OS...   450   e-123
F6DMS2_DESRL (tr|F6DMS2) Transcription-repair coupling factor OS...   450   e-123
C0CSG3_9FIRM (tr|C0CSG3) Putative uncharacterized protein (Fragm...   450   e-123
G2PIH3_MURRD (tr|G2PIH3) Transcription-repair coupling factor OS...   450   e-123
G9WY46_9FIRM (tr|G9WY46) Transcription-repair coupling factor OS...   450   e-123
M9LA53_PAEPP (tr|M9LA53) Transcription-repair coupling factor OS...   450   e-123
R5MC59_9MOLU (tr|R5MC59) Transcription-repair coupling factor OS...   450   e-123
F0DIN2_9FIRM (tr|F0DIN2) Transcription-repair coupling factor OS...   450   e-123
K9ADK3_9BACI (tr|K9ADK3) Transcription-repair coupling factor OS...   450   e-123
R7LQS4_9CLOT (tr|R7LQS4) Transcription-repair coupling factor OS...   450   e-123
E0TYI4_BACPZ (tr|E0TYI4) Transcription-repair coupling factor OS...   450   e-123
D5MVA1_BACPN (tr|D5MVA1) Transcription-repair coupling factor OS...   450   e-123
R5C0S4_9FIRM (tr|R5C0S4) Uncharacterized protein OS=Blautia hydr...   450   e-123
F8ACW6_THEID (tr|F8ACW6) Transcription-repair coupling factor (P...   450   e-123
F6B4I0_DESCC (tr|F6B4I0) Transcription-repair coupling factor OS...   450   e-123
E5CPB8_STAHO (tr|E5CPB8) Transcription-repair coupling factor OS...   449   e-123
G9QGM6_9BACI (tr|G9QGM6) Transcription-repair coupling factor OS...   449   e-123
K9AFR2_9STAP (tr|K9AFR2) Transcription-repair coupling factor OS...   449   e-123
F0P0V1_WEEVC (tr|F0P0V1) Transcription-repair coupling factor OS...   449   e-123
M1ZI31_9CLOT (tr|M1ZI31) Transcription-repair coupling factor OS...   449   e-123
C2M159_STAHO (tr|C2M159) Transcription-repair coupling factor OS...   449   e-123
B7DTM3_9BACL (tr|B7DTM3) Transcription-repair coupling factor OS...   449   e-123
Q8R759_THETN (tr|Q8R759) Transcription-repair coupling factor-su...   449   e-123
E0RM51_PAEP6 (tr|E0RM51) Transcription-repair coupling factor (T...   449   e-123
A0PXL4_CLONN (tr|A0PXL4) Transcription-repair coupling factor OS...   449   e-123
Q8EU31_OCEIH (tr|Q8EU31) Transcription-repair coupling factor (T...   449   e-123
E8ZPV4_CLOB0 (tr|E8ZPV4) Transcription-repair coupling factor OS...   449   e-123
B0TBA7_HELMI (tr|B0TBA7) Transcription-repair coupling factor OS...   448   e-123
H3VJQ7_STAHO (tr|H3VJQ7) Transcription-repair coupling factor OS...   448   e-123
K0TWV9_9STAP (tr|K0TWV9) Transcription-repair coupling factor OS...   448   e-123
E0RSW8_SPITD (tr|E0RSW8) Transcription-repair coupling factor OS...   448   e-123
G6AN73_LACRH (tr|G6AN73) Transcription-repair coupling factor OS...   448   e-123
R7ZKM5_LYSSH (tr|R7ZKM5) Transcription-repair coupling factor OS...   448   e-123
G2LGS6_CHLTF (tr|G2LGS6) Transcription-repair coupling factor (M...   448   e-123
C0CUY2_9CLOT (tr|C0CUY2) Putative uncharacterized protein OS=Clo...   448   e-123
K8Q8Y7_LACRH (tr|K8Q8Y7) Transcription-repair coupling factor OS...   448   e-123
K8Q6R2_LACRH (tr|K8Q6R2) Transcription-repair coupling factor OS...   448   e-123
Q9KGJ2_BACHD (tr|Q9KGJ2) Transcription-repair coupling factor (T...   448   e-123
E7G611_9FIRM (tr|E7G611) Transcription-repair coupling factor OS...   448   e-123
G6IWR1_LACRH (tr|G6IWR1) Transcription-repair coupling factor OS...   448   e-123
B5QPN1_LACRH (tr|B5QPN1) Transcription-repair coupling factor (S...   448   e-123
H3WAK6_STAEP (tr|H3WAK6) Transcription-repair coupling factor OS...   448   e-123
H3W6H7_STAEP (tr|H3W6H7) Transcription-repair coupling factor OS...   448   e-123
H3VXQ7_STAEP (tr|H3VXQ7) Transcription-repair coupling factor OS...   448   e-123
H3VDM4_STAEP (tr|H3VDM4) Transcription-repair coupling factor OS...   448   e-123
H3UYB3_STAEP (tr|H3UYB3) Transcription-repair coupling factor OS...   448   e-123
H3UVH9_STAEP (tr|H3UVH9) Transcription-repair coupling factor OS...   448   e-123
H3UJW2_STAEP (tr|H3UJW2) Transcription-repair coupling factor OS...   448   e-123
H3UCT1_STAEP (tr|H3UCT1) Transcription-repair coupling factor OS...   448   e-123
C2JVD8_LACRH (tr|C2JVD8) Transcription-repair coupling factor OS...   448   e-123
R8A5Z5_STAEP (tr|R8A5Z5) Transcription-repair coupling factor OS...   448   e-123
R8A3P6_STAEP (tr|R8A3P6) Transcription-repair coupling factor OS...   448   e-123
J1CEH5_STAEP (tr|J1CEH5) Transcription-repair coupling factor OS...   448   e-123
J1CDD0_STAEP (tr|J1CDD0) Transcription-repair coupling factor OS...   448   e-123
J0I2G4_STAEP (tr|J0I2G4) Transcription-repair coupling factor OS...   448   e-123
J0GC36_STAEP (tr|J0GC36) Transcription-repair coupling factor OS...   448   e-123
J0DUA9_STAEP (tr|J0DUA9) Transcription-repair coupling factor OS...   448   e-123
L0F385_DESDL (tr|L0F385) Transcription-repair coupling factor Mf...   448   e-123
K8NLA0_STAEP (tr|K8NLA0) Transcription-repair-coupling factor OS...   448   e-123
J0T1Z4_STAEP (tr|J0T1Z4) Transcription-repair coupling factor OS...   447   e-123
J0S981_STAEP (tr|J0S981) Transcription-repair coupling factor OS...   447   e-123
F9LEQ3_STAEP (tr|F9LEQ3) Transcription-repair coupling factor OS...   447   e-123
F3TVV3_STAEP (tr|F3TVV3) Transcription-repair coupling factor OS...   447   e-123
D4FHS6_STAEP (tr|D4FHS6) Transcription-repair coupling factor OS...   447   e-123
J0IY51_STAEP (tr|J0IY51) Transcription-repair coupling factor OS...   447   e-123
F8FCJ7_PAEMK (tr|F8FCJ7) Mfd OS=Paenibacillus mucilaginosus (str...   447   e-123
N6A9Q6_STAEP (tr|N6A9Q6) Transcription-repair-coupling factor OS...   447   e-123
L0D1F9_BACIU (tr|L0D1F9) Mfd (Mutation frequency decline) protei...   447   e-123
H0DL31_STAEP (tr|H0DL31) Transcription-repair coupling factor OS...   447   e-123
D3AB85_9CLOT (tr|D3AB85) Transcription-repair coupling factor OS...   447   e-123
I0BUK2_9BACL (tr|I0BUK2) Mfd OS=Paenibacillus mucilaginosus K02 ...   447   e-123
J0FTM0_STAEP (tr|J0FTM0) Transcription-repair coupling factor OS...   447   e-123
N0D965_BACIU (tr|N0D965) Transcription-repair coupling factor OS...   447   e-123
M2W8U9_BACIU (tr|M2W8U9) Transcription-repair coupling factor OS...   447   e-123
M1UI24_BACIU (tr|M1UI24) Transcription-repair coupling factor Mf...   447   e-123
L8AC20_BACIU (tr|L8AC20) Transcription-repair coupling factor OS...   447   e-123
J7JMI8_BACIU (tr|J7JMI8) Transcription-repair coupling factor OS...   447   e-123
E4LCA5_9FIRM (tr|E4LCA5) Transcription-repair coupling factor OS...   447   e-123
R5TUT1_9CLOT (tr|R5TUT1) Transcription-repair coupling factor OS...   447   e-123
C7TMD0_LACRL (tr|C7TMD0) Transcription-repair coupling factor OS...   447   e-123
G7UZ76_LACRH (tr|G7UZ76) Transcription-repair coupling factor OS...   447   e-123
G5JHI1_9STAP (tr|G5JHI1) Transcription-repair coupling factor OS...   447   e-123
E8VHW1_BACST (tr|E8VHW1) Transcription-repair coupling factor OS...   447   e-123
H6NSG6_9BACL (tr|H6NSG6) Mfd OS=Paenibacillus mucilaginosus 3016...   447   e-123
G4ENU8_BACIU (tr|G4ENU8) Transcription-repair coupling factor OS...   447   e-123
R7ILU2_9FIRM (tr|R7ILU2) Transcription-repair coupling factor OS...   447   e-123
Q39PS2_GEOMG (tr|Q39PS2) Transcription-repair coupling factor OS...   447   e-123
H1L8H6_GEOME (tr|H1L8H6) Transcription-repair coupling factor OS...   447   e-123
G0GER2_SPITZ (tr|G0GER2) Transcription-repair coupling factor OS...   447   e-123
G9XET3_9FIRM (tr|G9XET3) Transcription-repair coupling factor OS...   447   e-123
D6DH69_CLOSC (tr|D6DH69) Transcription-repair coupling factor OS...   447   e-123
M4X5A9_BACIU (tr|M4X5A9) Transcription-repair coupling factor OS...   447   e-123
M4KM48_BACIU (tr|M4KM48) Transcription-repair coupling factor OS...   447   e-123
H8FZC5_PEDPE (tr|H8FZC5) Transcription-repair coupling factor OS...   447   e-123
D4G3E2_BACNA (tr|D4G3E2) Transcription-repair coupling factor OS...   447   e-123
Q03DZ9_PEDPA (tr|Q03DZ9) Transcription-repair coupling factor OS...   447   e-123
J0JL73_STAEP (tr|J0JL73) Transcription-repair coupling factor OS...   447   e-123
J0NZW0_STAEP (tr|J0NZW0) Transcription-repair coupling factor OS...   447   e-123
J0ER71_STAEP (tr|J0ER71) Transcription-repair coupling factor OS...   447   e-123
A7FPJ6_CLOB1 (tr|A7FPJ6) Transcription-repair coupling factor OS...   447   e-123
A5I7R4_CLOBH (tr|A5I7R4) Transcription-repair coupling factor OS...   447   e-123
F9LNB6_STAEP (tr|F9LNB6) Transcription-repair coupling factor OS...   447   e-123
F9VM49_ARTSS (tr|F9VM49) Transcription-repair coupling factor OS...   447   e-123
H7FE49_9CLOT (tr|H7FE49) Transcription-repair coupling factor OS...   447   e-123
H7DNP7_9CLOT (tr|H7DNP7) Transcription-repair coupling factor OS...   447   e-123
G4CB56_9CLOT (tr|G4CB56) Transcription-repair coupling factor OS...   447   e-123
G2IDM1_9CLOT (tr|G2IDM1) Transcription-repair coupling factor OS...   447   e-123
D4C8Z1_9CLOT (tr|D4C8Z1) Transcription-repair coupling factor OS...   447   e-123
M5NWS5_9BACI (tr|M5NWS5) Transcription-repair coupling factor OS...   447   e-123
H7DH64_9CLOT (tr|H7DH64) Transcription-repair coupling factor (F...   447   e-123
M3DXA2_9BACL (tr|M3DXA2) Transcription-repair coupling factor OS...   447   e-123
E6JR68_STAEP (tr|E6JR68) Transcription-repair coupling factor OS...   447   e-123
J1BHY5_STAEP (tr|J1BHY5) Transcription-repair coupling factor OS...   447   e-122
I0TLM7_STAEP (tr|I0TLM7) Transcription-repair coupling factor OS...   447   e-122
I0TGS2_STAEP (tr|I0TGS2) Transcription-repair coupling factor OS...   447   e-122
F3TUH0_STAEP (tr|F3TUH0) Transcription-repair coupling factor OS...   447   e-122
C5Q666_STAEP (tr|C5Q666) Transcription-repair coupling factor OS...   447   e-122
K1UHU0_STAEP (tr|K1UHU0) Transcription-repair coupling factor OS...   447   e-122
J1BLW1_STAEP (tr|J1BLW1) Transcription-repair coupling factor OS...   447   e-122
J0YER5_STAEP (tr|J0YER5) Transcription-repair coupling factor OS...   447   e-122
H3Z6R9_STAEP (tr|H3Z6R9) Transcription-repair coupling factor OS...   447   e-122
D1WL66_STAEP (tr|D1WL66) Transcription-repair coupling factor OS...   447   e-122
B1IGZ6_CLOBK (tr|B1IGZ6) Transcription-repair coupling factor OS...   447   e-122
L1LIF7_CLOBO (tr|L1LIF7) Transcription-repair coupling factor OS...   447   e-122
G9XSL0_DESHA (tr|G9XSL0) Transcription-repair coupling factor OS...   447   e-122
J0XP74_STAEP (tr|J0XP74) Transcription-repair coupling factor OS...   447   e-122
J0E2K4_STAEP (tr|J0E2K4) Transcription-repair coupling factor OS...   447   e-122
B8FZB7_DESHD (tr|B8FZB7) Transcription-repair coupling factor OS...   447   e-122
F3T0C2_STAEP (tr|F3T0C2) Transcription-repair coupling factor OS...   447   e-122
J1BR57_STAEP (tr|J1BR57) Transcription-repair coupling factor OS...   447   e-122
Q251R4_DESHY (tr|Q251R4) Putative uncharacterized protein OS=Des...   446   e-122

>I1ML78_SOYBN (tr|I1ML78) Uncharacterized protein OS=Glycine max PE=4 SV=1
          Length = 826

 Score = 1370 bits (3547), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 666/817 (81%), Positives = 730/817 (89%), Gaps = 9/817 (1%)

Query: 10  QIPTTPFIXXXXXXXXXXXXFILSYPLHQKTI------KRLTLPSPTKAVYTQGLYVSAP 63
            IPT P I            FIL+YP H K        KRL L SPT AVYTQ  Y  + 
Sbjct: 13  HIPT-PLISKISSSPRTWSLFILTYPSHPKNNNNNNNNKRLFL-SPTNAVYTQSPYTPST 70

Query: 64  PPSKTDLDNDPISLLNERIRRDHGKREVSRTVMDKKEAEKYIQLVKEQQQRGLQKLKGER 123
           P SKT+L NDPI++LNERIRRD  K+E  RTVMD +EA KY+++VK QQQRGLQKLKG+R
Sbjct: 71  P-SKTELHNDPITVLNERIRRDLSKKEAFRTVMDSEEAGKYMKMVKVQQQRGLQKLKGDR 129

Query: 124 VGKDGNFSYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAK 183
             KDG FSYKVDPYTLR+GDYVVH+KVG+G F+G++ DV KNS++PTEYVFIEYADGMAK
Sbjct: 130 ESKDGVFSYKVDPYTLRSGDYVVHRKVGVGRFVGMRFDVAKNSSQPTEYVFIEYADGMAK 189

Query: 184 LPVKQSSKMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRL 243
           LPV +++KMLYRY LPNE KKPKALSKL+DTS WEKRK KGKVAIQKMVVDLMELYLHRL
Sbjct: 190 LPVNKAAKMLYRYSLPNETKKPKALSKLSDTSAWEKRKVKGKVAIQKMVVDLMELYLHRL 249

Query: 244 KQRRPPYPKSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTE 303
           KQRRP YPKSPAMAEF A FPYEPTPDQK+AFIDVE+DLTERETPMDRLICGDVGFGKTE
Sbjct: 250 KQRRPLYPKSPAMAEFAALFPYEPTPDQKRAFIDVERDLTERETPMDRLICGDVGFGKTE 309

Query: 304 VALRAIRCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEH 363
           VALRAI CVVSAKKQAMVLAPTIVLAKQHFDVISERF+VYPDIKVGLLSRFQTKAEKEE+
Sbjct: 310 VALRAISCVVSAKKQAMVLAPTIVLAKQHFDVISERFSVYPDIKVGLLSRFQTKAEKEEN 369

Query: 364 LESIKSGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLS 423
           L+ IK+G LDIIVGTHSLLG+RV Y+NLGLLVVDEEQRFGVKQKEKIA+FKTSVDVLTLS
Sbjct: 370 LDKIKNGSLDIIVGTHSLLGDRVTYNNLGLLVVDEEQRFGVKQKEKIASFKTSVDVLTLS 429

Query: 424 ATPIPRTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYV 483
           ATPIPRTLYLALTGFRDASL++TPPPERVPIKTHLSSFS++KV+SAIKYELDRGGQVFYV
Sbjct: 430 ATPIPRTLYLALTGFRDASLMSTPPPERVPIKTHLSSFSEDKVVSAIKYELDRGGQVFYV 489

Query: 484 LPRIKGLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGL 543
           LPRIKGL+EVM FL ESFP+VEIAI HGK YSKQLEDTMEKFALGEIKILI TNIVESGL
Sbjct: 490 LPRIKGLDEVMTFLAESFPNVEIAIAHGKLYSKQLEDTMEKFALGEIKILICTNIVESGL 549

Query: 544 DIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEE 603
           DIQNANTII+QDVQQFGLAQLYQLRGRVGRADKEA+AYL YPDK+LLSDQALERL+A+EE
Sbjct: 550 DIQNANTIIIQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAAIEE 609

Query: 604 CRELGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVP 663
           CRELGQGFQLAE+DMGIRGFG IFGEQQ+GDVGNVGIDLFFEMLFESLSKVE+HRVV+VP
Sbjct: 610 CRELGQGFQLAEKDMGIRGFGAIFGEQQSGDVGNVGIDLFFEMLFESLSKVEDHRVVSVP 669

Query: 664 YHSVQVDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRP 723
           YHSVQVDININPHLPS+YIN+LENP++IIN+AERVAEKD WSLMQFTENLRRQYGKEPR 
Sbjct: 670 YHSVQVDININPHLPSDYINYLENPLKIINDAERVAEKDIWSLMQFTENLRRQYGKEPRS 729

Query: 724 MEVLLKKLYLRRMAADIGINRIYSSGKTVFMKANITKKVFKMMTDSMTSDIYRNSLVLEG 783
           ME+LLKKLYLRRMAAD+GI  IYSSGK ++MK N++KKVFKMMT+SM SD++RNSLVLEG
Sbjct: 730 MEILLKKLYLRRMAADLGITSIYSSGKMIYMKTNMSKKVFKMMTESMASDLHRNSLVLEG 789

Query: 784 DQIKAXXXXXXXXXXXXNWIFQCVAELHASLPALIKY 820
           DQIKA            NWIFQC+AELHASLP+ IKY
Sbjct: 790 DQIKAELLLELPKEQLLNWIFQCLAELHASLPSFIKY 826


>K7MXQ0_SOYBN (tr|K7MXQ0) Uncharacterized protein OS=Glycine max PE=4 SV=1
          Length = 823

 Score = 1368 bits (3541), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 668/823 (81%), Positives = 732/823 (88%), Gaps = 8/823 (0%)

Query: 2   ASLLPCPQQIPTTPFIXXXXXXXXXXXXFILSYPLHQKTI----KRLTLPSPTKAVYTQG 57
           +SLLP P  IPT P I            FIL YP H KT     KRL L SPT AVYTQ 
Sbjct: 5   SSLLPRPH-IPT-PLISKLTSSPRTWSLFILKYPSHPKTNSNNNKRLIL-SPTNAVYTQS 61

Query: 58  LYVSAPPPSKTDLDNDPISLLNERIRRDHGKREVSRTVMDKKEAEKYIQLVKEQQQRGLQ 117
            +  + P SKT+L ND I++LNERIRRD  K+E  RTVMD +EA KY+Q+VK QQQRGLQ
Sbjct: 62  PHTPSTP-SKTELHNDAITVLNERIRRDFSKKEAFRTVMDSEEAGKYMQMVKVQQQRGLQ 120

Query: 118 KLKGERVGKDGNFSYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEY 177
           KLKG+R  KDG FSYKVDPYTLR+GDYVVH+KVG+G F+G++ DV KNS++ TEYVFIEY
Sbjct: 121 KLKGDRGTKDGVFSYKVDPYTLRSGDYVVHRKVGVGRFVGMRFDVAKNSSQHTEYVFIEY 180

Query: 178 ADGMAKLPVKQSSKMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLME 237
           ADGMAKLPV Q++KMLYRY LPNE KKPKALSKL+DTS WE+RK KGKVAIQKMVVDLME
Sbjct: 181 ADGMAKLPVHQAAKMLYRYSLPNETKKPKALSKLSDTSAWERRKVKGKVAIQKMVVDLME 240

Query: 238 LYLHRLKQRRPPYPKSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDV 297
           LYLHRLKQRRPPYPKSPAMA+F AQF YEPTPDQK+AFIDVE+DLTERETPMDRLICGDV
Sbjct: 241 LYLHRLKQRRPPYPKSPAMAKFAAQFRYEPTPDQKRAFIDVERDLTERETPMDRLICGDV 300

Query: 298 GFGKTEVALRAIRCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTK 357
           GFGKTEVALRAI CVVSAKKQAMVLAPTIVLAKQHFDVISERF+VYPDIKVGLLSRFQTK
Sbjct: 301 GFGKTEVALRAISCVVSAKKQAMVLAPTIVLAKQHFDVISERFSVYPDIKVGLLSRFQTK 360

Query: 358 AEKEEHLESIKSGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSV 417
           AEKEE+L+ IK+G LDIIVGTHSLLG+RV Y+NLGLLVVDEEQRFGVKQKEKIA+FKTSV
Sbjct: 361 AEKEENLDKIKNGTLDIIVGTHSLLGDRVTYNNLGLLVVDEEQRFGVKQKEKIASFKTSV 420

Query: 418 DVLTLSATPIPRTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRG 477
           DVLTLSATPIPRTLYLALTGFRDASL++TPPPERVPIKTHLSSF ++KV+SAIKYELDRG
Sbjct: 421 DVLTLSATPIPRTLYLALTGFRDASLMSTPPPERVPIKTHLSSFGEDKVVSAIKYELDRG 480

Query: 478 GQVFYVLPRIKGLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTN 537
           GQVFYVLPRIKGL+ VM FL ESFP+VEIAI HGK YSKQLEDTMEKFALGEIKILI TN
Sbjct: 481 GQVFYVLPRIKGLDGVMAFLVESFPNVEIAIAHGKLYSKQLEDTMEKFALGEIKILICTN 540

Query: 538 IVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALER 597
           IVESGLDIQNANTII+QDVQQFGLAQLYQLRGRVGRADKEA+AYL YPDK LLSDQALER
Sbjct: 541 IVESGLDIQNANTIIIQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKGLLSDQALER 600

Query: 598 LSALEECRELGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEH 657
           L+A+EECRELGQGFQLAE+DMGIRGFG IFGEQQ+GDVGNVGIDLFFEMLFESLSKVE+H
Sbjct: 601 LAAIEECRELGQGFQLAEKDMGIRGFGAIFGEQQSGDVGNVGIDLFFEMLFESLSKVEDH 660

Query: 658 RVVAVPYHSVQVDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQY 717
            VV+VPYHSVQVDININPHLPS+YIN+L+NPM+IIN+AERVAEKD WSLMQFTENLRRQY
Sbjct: 661 HVVSVPYHSVQVDININPHLPSDYINYLDNPMKIINDAERVAEKDIWSLMQFTENLRRQY 720

Query: 718 GKEPRPMEVLLKKLYLRRMAADIGINRIYSSGKTVFMKANITKKVFKMMTDSMTSDIYRN 777
           GKEPR ME+LLKKLYLRRMAAD+GI RIYSSGK ++MK N++KKVFKMMT+SM SD++RN
Sbjct: 721 GKEPRSMEILLKKLYLRRMAADLGITRIYSSGKMIYMKTNMSKKVFKMMTESMASDLHRN 780

Query: 778 SLVLEGDQIKAXXXXXXXXXXXXNWIFQCVAELHASLPALIKY 820
           SLVLEGDQIKA            NWIFQC+AELHASLP+ IKY
Sbjct: 781 SLVLEGDQIKAELLLELPKEQLLNWIFQCLAELHASLPSFIKY 823


>F6H414_VITVI (tr|F6H414) Putative uncharacterized protein OS=Vitis vinifera
           GN=VIT_14s0068g00810 PE=4 SV=1
          Length = 823

 Score = 1315 bits (3403), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 639/795 (80%), Positives = 714/795 (89%), Gaps = 7/795 (0%)

Query: 30  FILSYPLHQKTIKRLTLPSPTKAVYTQGLYV--SAPPPSKTDLDNDPISLLNERIRRDHG 87
           F  + P H + IKR  L   T AVYT+G+ +  S     + + ++D I++LNERIRR+  
Sbjct: 32  FFFACPCHAR-IKRTHLL--TTAVYTEGVSITRSVQRRERMEPESDDITILNERIRREQS 88

Query: 88  KREVSRT-VMDKKEAEKYIQLVKEQQQRGLQKLKGERVGK-DGNFSYKVDPYTLRNGDYV 145
           KR+VSR  V+D +EA+KYIQLVKEQQ+RGLQKLKGERVGK +G FSYKVDPYTLR+GDYV
Sbjct: 89  KRDVSRAPVVDSEEADKYIQLVKEQQRRGLQKLKGERVGKENGQFSYKVDPYTLRSGDYV 148

Query: 146 VHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSSKMLYRYCLPNENKKP 205
           VHKKVGIG F+GIK+DVPK+S+ P EYVFIEYADGMAKLPVKQ+S+MLYRY LP+E+K+P
Sbjct: 149 VHKKVGIGRFVGIKLDVPKDSSNPIEYVFIEYADGMAKLPVKQASRMLYRYNLPSESKRP 208

Query: 206 KALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPYPKSPAMAEFTAQFPY 265
           + LSKL+DTS+WE+R+ KG+VAIQKMVVDLMELYLHRLKQ+RPPYPKSP MAEF AQF Y
Sbjct: 209 RTLSKLSDTSIWERRRIKGRVAIQKMVVDLMELYLHRLKQKRPPYPKSPGMAEFEAQFSY 268

Query: 266 EPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAIRCVVSAKKQAMVLAPT 325
           EPTPDQKQAFIDVE+DLTERETPMDRLICGDVGFGKTEVALRAI CVVSA KQAMVLAPT
Sbjct: 269 EPTPDQKQAFIDVEEDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPT 328

Query: 326 IVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKSGELDIIVGTHSLLGNR 385
           IVLAKQHFDVI+ERF+ YP+IKVGLLSRFQT AEKE+HL  IK G+LDIIVGTHSLLGNR
Sbjct: 329 IVLAKQHFDVITERFSKYPNIKVGLLSRFQTTAEKEKHLRMIKHGDLDIIVGTHSLLGNR 388

Query: 386 VVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPRTLYLALTGFRDASLIT 445
           VVYSNLGLLVVDEEQRFGVKQKEKIA+FKTSVDVLTLSATPIPRTLYLALTGFRDASLI+
Sbjct: 389 VVYSNLGLLVVDEEQRFGVKQKEKIASFKTSVDVLTLSATPIPRTLYLALTGFRDASLIS 448

Query: 446 TPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEVMEFLEESFPDVE 505
           TPPPERVPI THLS+++KEK+ISAIK+EL RGGQ+FYVLPRIKGLEEVMEFLE SFPDVE
Sbjct: 449 TPPPERVPIITHLSAYNKEKIISAIKFELGRGGQIFYVLPRIKGLEEVMEFLECSFPDVE 508

Query: 506 IAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNANTIIVQDVQQFGLAQLY 565
           IAI HGKQYSKQLE+TM++FA GEIKILI TNIVESGLDIQNANTII+Q+VQQFGLAQLY
Sbjct: 509 IAIAHGKQYSKQLEETMDRFAQGEIKILICTNIVESGLDIQNANTIIIQEVQQFGLAQLY 568

Query: 566 QLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQGFQLAERDMGIRGFGT 625
           QLRGRVGRADKEA+AYL YPDK+LLSDQALERLSALEECR+LGQGFQLAERDMGIRGFG 
Sbjct: 569 QLRGRVGRADKEAHAYLFYPDKSLLSDQALERLSALEECRDLGQGFQLAERDMGIRGFGN 628

Query: 626 IFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQVDININPHLPSEYINHL 685
           IFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHR+++VPY SVQ DININPHLPSEYIN+L
Sbjct: 629 IFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRLISVPYQSVQFDININPHLPSEYINYL 688

Query: 686 ENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLLKKLYLRRMAADIGINRI 745
           ENPMEII+EAE+ AE+D WSLMQFTENLRRQYGKEP  MEVLLKKLY++RMAAD+GI RI
Sbjct: 689 ENPMEIISEAEKSAEEDIWSLMQFTENLRRQYGKEPYSMEVLLKKLYVKRMAADLGITRI 748

Query: 746 YSSGKTVFMKANITKKVFKMMTDSMTSDIYRNSLVLEGDQIKAXXXXXXXXXXXXNWIFQ 805
           Y+SGKTV M+  + KKVFK++TDSM SDI RNSLV E +QIKA            NW+FQ
Sbjct: 749 YASGKTVIMRTKMNKKVFKLITDSMASDIIRNSLVFEENQIKAELLLELPREQFLNWVFQ 808

Query: 806 CVAELHASLPALIKY 820
           C+AELHASLPALIKY
Sbjct: 809 CLAELHASLPALIKY 823


>M4FHX8_BRARP (tr|M4FHX8) Uncharacterized protein OS=Brassica rapa subsp.
           pekinensis GN=Bra040707 PE=4 SV=1
          Length = 822

 Score = 1299 bits (3361), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 616/750 (82%), Positives = 690/750 (92%)

Query: 71  DNDPISLLNERIRRDHGKREVSRTVMDKKEAEKYIQLVKEQQQRGLQKLKGERVGKDGNF 130
           ++D IS+LNERIRRD GKRE +R  MD KEAEKYIQ+VKEQQ+RGLQKLKG R G DG F
Sbjct: 73  ESDSISILNERIRRDLGKRETARPAMDSKEAEKYIQMVKEQQERGLQKLKGVRPGSDGGF 132

Query: 131 SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
           SYKVDPYTL +GDYVVHKKVGIG F+GIK+DVPK+S+EP EYVFIEYADGMAKLP+KQ+S
Sbjct: 133 SYKVDPYTLLSGDYVVHKKVGIGRFVGIKLDVPKDSSEPLEYVFIEYADGMAKLPLKQAS 192

Query: 191 KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
           ++LYRY LPNE+K+P+ LS+L+DTSVWE+RKTKGKVAIQKMVVDLMELYLHRL+Q+R PY
Sbjct: 193 RLLYRYNLPNESKRPRTLSRLSDTSVWERRKTKGKVAIQKMVVDLMELYLHRLRQKRFPY 252

Query: 251 PKSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAIR 310
           PK+P MA+F AQFPY  TPDQKQAF+DV+KDLTERETPMDRLICGDVGFGKTEVALRAI 
Sbjct: 253 PKNPVMADFAAQFPYNATPDQKQAFLDVDKDLTERETPMDRLICGDVGFGKTEVALRAIF 312

Query: 311 CVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKSG 370
           CVVSA KQAMVLAPTIVLAKQH+DVIS+RF++YP IKVGLLSRFQTKAEKE +LE IK G
Sbjct: 313 CVVSAGKQAMVLAPTIVLAKQHYDVISQRFSLYPQIKVGLLSRFQTKAEKETYLEMIKHG 372

Query: 371 ELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPRT 430
            L+IIVGTHSLLG+RVVYSNLGLLVVDEEQRFGVKQKEKIA+FKTSVDVLTLSATPIPRT
Sbjct: 373 HLNIIVGTHSLLGSRVVYSNLGLLVVDEEQRFGVKQKEKIASFKTSVDVLTLSATPIPRT 432

Query: 431 LYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKGL 490
           LYLALTGFRDASLI+TPPPER+PIKTHLSSF KEKVI AIK EL+RGGQVFYVLPRIKGL
Sbjct: 433 LYLALTGFRDASLISTPPPERIPIKTHLSSFRKEKVIKAIKNELNRGGQVFYVLPRIKGL 492

Query: 491 EEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNANT 550
           EEVM+FLEE+FPD++IA+ HGKQYSKQLE+TME+FA G+IKILI TNIVESGLDIQNANT
Sbjct: 493 EEVMDFLEEAFPDIDIAMAHGKQYSKQLEETMERFAQGKIKILICTNIVESGLDIQNANT 552

Query: 551 IIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQG 610
           II+QDVQQFGLAQLYQLRGRVGRADKEA+AYL YPDK+LLSDQALERLSALEECRELGQG
Sbjct: 553 IIIQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLSALEECRELGQG 612

Query: 611 FQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQVD 670
           FQLAE+DMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEE R+ +VPY+ V++D
Sbjct: 613 FQLAEKDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEELRIFSVPYNLVKID 672

Query: 671 ININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLLKK 730
           ININP LPSEY+N+LENPMEIINEAE+ AEKD WSLMQFTENLRRQYGKEP  ME++LKK
Sbjct: 673 ININPRLPSEYVNYLENPMEIINEAEKAAEKDMWSLMQFTENLRRQYGKEPYSMEIILKK 732

Query: 731 LYLRRMAADIGINRIYSSGKTVFMKANITKKVFKMMTDSMTSDIYRNSLVLEGDQIKAXX 790
           LY+RRMAAD+G+NRIY+SGK V MK N++KKVFK++TDSMT D+YR+SL+ EGDQI A  
Sbjct: 733 LYVRRMAADLGVNRIYASGKMVVMKTNMSKKVFKLITDSMTCDVYRSSLIYEGDQIMAEL 792

Query: 791 XXXXXXXXXXNWIFQCVAELHASLPALIKY 820
                     NW+FQC++ELHASLPALIKY
Sbjct: 793 LLELPREQLLNWMFQCLSELHASLPALIKY 822


>E4MX46_THEHA (tr|E4MX46) mRNA, clone: RTFL01-13-N09 OS=Thellungiella halophila
           PE=2 SV=1
          Length = 823

 Score = 1297 bits (3357), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 633/829 (76%), Positives = 714/829 (86%), Gaps = 15/829 (1%)

Query: 1   MASLLPCPQQIPTTPFIXXXXXXXXXXXXFILSYPLHQKTIKRLTLPSPTKAVYTQGLYV 60
           M SLLP P  + TTP +            F L     + +  R +   P  AV +  L  
Sbjct: 1   MTSLLPNPDLVSTTPLVFKLYSFPPPRRLFTL----RRSSFARNSSSLPLVAVSS--LSA 54

Query: 61  SAPPPSKTD-----LDNDPISLLNERIRRDHGKREVSRTVMDKKEAEKYIQLVKEQQQRG 115
           +A  P++        +ND ISLLNERIRRD GKRE SR  MD +EA+KYIQ+VKEQQ+RG
Sbjct: 55  TAAKPTRWREKQEFAENDSISLLNERIRRDLGKRETSRPAMDSEEADKYIQMVKEQQERG 114

Query: 116 LQKLKGER----VGKDGNFSYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTE 171
           LQKLKG R     G  G FSYKVDPY+L +GDYVVHKKVGIG F+GIK DVPK+S+EP E
Sbjct: 115 LQKLKGVRQGTETGSGGGFSYKVDPYSLLSGDYVVHKKVGIGRFVGIKFDVPKDSSEPLE 174

Query: 172 YVFIEYADGMAKLPVKQSSKMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKM 231
           YVFIEYADGMAKLP+KQ+S++LYRY LPNE K+P+ LS+L+DTSVWE+RKTKGKVAIQKM
Sbjct: 175 YVFIEYADGMAKLPLKQASRLLYRYNLPNETKRPRTLSRLSDTSVWERRKTKGKVAIQKM 234

Query: 232 VVDLMELYLHRLKQRRPPYPKSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDR 291
           VVDLMELYLHRL+Q+R PYPK+P MA+F AQFPY  TPDQKQAF+DV+KDLTERETPMDR
Sbjct: 235 VVDLMELYLHRLRQKRYPYPKNPIMADFAAQFPYNATPDQKQAFLDVDKDLTERETPMDR 294

Query: 292 LICGDVGFGKTEVALRAIRCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLL 351
           LICGDVGFGKTEVALRAI CVVSA KQAMVLAPTIVLAKQH+DVISERF++YP IKVGLL
Sbjct: 295 LICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHYDVISERFSLYPQIKVGLL 354

Query: 352 SRFQTKAEKEEHLESIKSGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIA 411
           SRFQTKAEKEE+LE IK+G+L+IIVGTHSLLG+RVVYSNLGLLVVDEEQRFGVKQKEKIA
Sbjct: 355 SRFQTKAEKEEYLEMIKNGDLNIIVGTHSLLGSRVVYSNLGLLVVDEEQRFGVKQKEKIA 414

Query: 412 TFKTSVDVLTLSATPIPRTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIK 471
           +FKTSVDVLTLSATPIPRTLYLALTGFRDASLI+TPPPER+PIKTHLSSF KEKVI AIK
Sbjct: 415 SFKTSVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERIPIKTHLSSFRKEKVIEAIK 474

Query: 472 YELDRGGQVFYVLPRIKGLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIK 531
            ELDRGGQVFYVLPRIKGLEEVM FLEE+FPD++IA+ HGK+YSKQLE+TME+FA G+IK
Sbjct: 475 NELDRGGQVFYVLPRIKGLEEVMNFLEEAFPDIDIAMAHGKRYSKQLEETMERFAQGKIK 534

Query: 532 ILISTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLS 591
           ILI TNIVESGLDIQNANTII+QDVQQFGLAQLYQLRGRVGRADKEA+AYL YPDK+LLS
Sbjct: 535 ILICTNIVESGLDIQNANTIIIQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLS 594

Query: 592 DQALERLSALEECRELGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESL 651
           DQALERLSALEECRELGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESL
Sbjct: 595 DQALERLSALEECRELGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESL 654

Query: 652 SKVEEHRVVAVPYHSVQVDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTE 711
           SKVEE R+ +VPY+ V++DI+INP LPSEY+N+LENPMEIINEAE+ AEKD WSLMQFTE
Sbjct: 655 SKVEELRIFSVPYNLVKIDIDINPRLPSEYVNYLENPMEIINEAEKAAEKDMWSLMQFTE 714

Query: 712 NLRRQYGKEPRPMEVLLKKLYLRRMAADIGINRIYSSGKTVFMKANITKKVFKMMTDSMT 771
           NLRRQYGKEP  ME++LKKLY+RRMAAD+G+NRIY+SGK V MK N++KKVF ++ DSMT
Sbjct: 715 NLRRQYGKEPYSMEIILKKLYVRRMAADLGVNRIYASGKIVVMKTNMSKKVFNLIKDSMT 774

Query: 772 SDIYRNSLVLEGDQIKAXXXXXXXXXXXXNWIFQCVAELHASLPALIKY 820
            D+YR+SL+ EGDQI A            NW+FQC++ELHASLPALIKY
Sbjct: 775 CDVYRSSLIHEGDQIMAELLLELPREQLLNWMFQCLSELHASLPALIKY 823


>R0GC11_9BRAS (tr|R0GC11) Uncharacterized protein OS=Capsella rubella
           GN=CARUB_v10016483mg PE=4 SV=1
          Length = 828

 Score = 1295 bits (3351), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 619/754 (82%), Positives = 689/754 (91%), Gaps = 4/754 (0%)

Query: 71  DNDPISLLNERIRRDHGKREVSRTVMDKKEAEKYIQLVKEQQQRGLQKLKGERVGKD--- 127
           ++D ISLLNERIRRD GKRE +R  MD +EAEKYIQ+VKEQQ+RGLQKLKG R G +   
Sbjct: 75  ESDSISLLNERIRRDLGKRETARPAMDSEEAEKYIQMVKEQQERGLQKLKGFRQGTEAAG 134

Query: 128 -GNFSYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPV 186
            G FSYKVDPY+L +GDYVVHKKVGIG F+GIK DVPK+S+EP EYVFIEYADGMAKLP+
Sbjct: 135 AGGFSYKVDPYSLLSGDYVVHKKVGIGRFVGIKFDVPKDSSEPLEYVFIEYADGMAKLPL 194

Query: 187 KQSSKMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQR 246
           KQ+S++LYRY LPNE K+P+ LS+L+DTSVWE+RKTKGKVAIQKMVVDLMELYLHRL+Q+
Sbjct: 195 KQASRLLYRYNLPNETKRPRTLSRLSDTSVWERRKTKGKVAIQKMVVDLMELYLHRLRQK 254

Query: 247 RPPYPKSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVAL 306
           R PYPK+P MA+F AQFPY  TPDQKQAF+DVEKDLTERETPMDRLICGDVGFGKTEVAL
Sbjct: 255 RYPYPKNPIMADFAAQFPYNATPDQKQAFLDVEKDLTERETPMDRLICGDVGFGKTEVAL 314

Query: 307 RAIRCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLES 366
           RAI CVVSA KQAMVLAPTIVLAKQH+DVISERF++Y  IKVGLLSRFQTKAEKEE+LE 
Sbjct: 315 RAIFCVVSAGKQAMVLAPTIVLAKQHYDVISERFSLYSQIKVGLLSRFQTKAEKEEYLEM 374

Query: 367 IKSGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATP 426
           IKSG L+IIVGTHSLLG+RVVYSNLGLLVVDEEQRFGVKQKEKIA+FKTSVDVLTLSATP
Sbjct: 375 IKSGHLNIIVGTHSLLGSRVVYSNLGLLVVDEEQRFGVKQKEKIASFKTSVDVLTLSATP 434

Query: 427 IPRTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPR 486
           IPRTLYLALTGFRDASLI+TPPPER+PIKTHLSSF KEKVI AIK ELDRGGQVFYVLPR
Sbjct: 435 IPRTLYLALTGFRDASLISTPPPERIPIKTHLSSFRKEKVIEAIKNELDRGGQVFYVLPR 494

Query: 487 IKGLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQ 546
           IKGLEEVM+FLEE+FPD++IA+ HGKQYSKQLE+TME+FA G+IKILI TNIVESGLDIQ
Sbjct: 495 IKGLEEVMDFLEEAFPDIDIAMAHGKQYSKQLEETMERFAQGKIKILICTNIVESGLDIQ 554

Query: 547 NANTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRE 606
           NANTII+QDVQQFGLAQLYQLRGRVGRADKEA+AYL YPDK+LLSDQALERLSALEECRE
Sbjct: 555 NANTIIIQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLSALEECRE 614

Query: 607 LGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHS 666
           LGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEE R+ +VPY+ 
Sbjct: 615 LGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEELRIFSVPYNL 674

Query: 667 VQVDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEV 726
           V++DININP LPSEY+N+LENPMEIINEAE+ AEKD WSLMQFTENLRRQYGKEP  ME+
Sbjct: 675 VKIDININPRLPSEYVNYLENPMEIINEAEKAAEKDMWSLMQFTENLRRQYGKEPYSMEI 734

Query: 727 LLKKLYLRRMAADIGINRIYSSGKTVFMKANITKKVFKMMTDSMTSDIYRNSLVLEGDQI 786
           +LKKLY+RRMAAD+G+NRIY+SGK V MK N++KKVFK++TDSMT D+YR+SL+ EGDQI
Sbjct: 735 ILKKLYVRRMAADLGVNRIYASGKIVVMKTNMSKKVFKLITDSMTCDVYRSSLIYEGDQI 794

Query: 787 KAXXXXXXXXXXXXNWIFQCVAELHASLPALIKY 820
            A            NW+FQC++ELHASLPALIKY
Sbjct: 795 MAELLLELPREQLLNWMFQCLSELHASLPALIKY 828


>B9IA74_POPTR (tr|B9IA74) Predicted protein OS=Populus trichocarpa
           GN=POPTRDRAFT_572874 PE=2 SV=1
          Length = 817

 Score = 1294 bits (3348), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 627/814 (77%), Positives = 704/814 (86%), Gaps = 9/814 (1%)

Query: 13  TTPFIXXXXXXXXXXXXFILSYPLHQKTIKRLTLPSPTKAVYTQGLY----VSAPPPSKT 68
           +TP I            F +  P         +L   T AV TQ        +A P  K 
Sbjct: 7   STPLIFKLNSSTKLRRLFSVKLPYRHNHKPSFSL---TNAVRTQTAVPFSSRTATPKYKI 63

Query: 69  DLDNDPISLLNERIRRDH-GKREVSRTVMDKKEAEKYIQLVKEQQQRGLQKLKGERVGKD 127
           + + DPIS+LNERIRR H GKRE SR +MD +EA++YIQ+VKEQQQRGLQKLKG+RV K+
Sbjct: 64  ETEQDPISILNERIRRQHHGKREGSRPIMDSEEADQYIQMVKEQQQRGLQKLKGDRVAKE 123

Query: 128 GN-FSYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPV 186
           G+ FSYKVDPYTLR+GDYVVHKKVGIG F GIK DVPK S+E  EYVFIEYADGMAKLPV
Sbjct: 124 GDVFSYKVDPYTLRSGDYVVHKKVGIGRFFGIKFDVPKGSSEAIEYVFIEYADGMAKLPV 183

Query: 187 KQSSKMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQR 246
            Q+S+MLYRY LPNE K+P+ LSKL+DT  WE+RKTKGKVAIQKMVVDLMELYLHRLKQR
Sbjct: 184 MQASRMLYRYNLPNETKRPRTLSKLSDTGAWERRKTKGKVAIQKMVVDLMELYLHRLKQR 243

Query: 247 RPPYPKSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVAL 306
           RPPYPK+P MAEF AQFPYEPTPDQK AFIDVE+DL +RETPMDRLICGDVGFGKTEVAL
Sbjct: 244 RPPYPKTPFMAEFAAQFPYEPTPDQKLAFIDVERDLNQRETPMDRLICGDVGFGKTEVAL 303

Query: 307 RAIRCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLES 366
           RAI C+VSA KQAMVLAPTIVLAKQHFDVISERF+ Y  IKV LLSRFQ+KAEKE +L  
Sbjct: 304 RAIFCIVSAGKQAMVLAPTIVLAKQHFDVISERFSKYSHIKVALLSRFQSKAEKEMYLNM 363

Query: 367 IKSGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATP 426
           I+ G LDIIVGTHSLLGNRVVY+NLGLLVVDEEQRFGVKQKEKIA+FKTSVDVLTLSATP
Sbjct: 364 IEHGHLDIIVGTHSLLGNRVVYNNLGLLVVDEEQRFGVKQKEKIASFKTSVDVLTLSATP 423

Query: 427 IPRTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPR 486
           IPRTLYLALTGFRDASLI+TPPPERVPIKTHLS+++K+K+ISAIKYELDRGGQVFYVLPR
Sbjct: 424 IPRTLYLALTGFRDASLISTPPPERVPIKTHLSAYNKDKLISAIKYELDRGGQVFYVLPR 483

Query: 487 IKGLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQ 546
           IKGLEEV +FLE+SFP+VEIA+ HG+QYSKQLEDTME+FA GEIKILI TNIVESGLDIQ
Sbjct: 484 IKGLEEVKDFLEQSFPNVEIAVAHGQQYSKQLEDTMEQFAQGEIKILICTNIVESGLDIQ 543

Query: 547 NANTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRE 606
           NANTII+QDVQ FGLAQLYQLRGRVGRADKEA+A+L YPDK++L+DQALERL+ALEECRE
Sbjct: 544 NANTIIIQDVQLFGLAQLYQLRGRVGRADKEAHAHLFYPDKSMLTDQALERLAALEECRE 603

Query: 607 LGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHS 666
           LGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVG+D FFEMLFESLSKV+EHRV++VPY S
Sbjct: 604 LGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGVDFFFEMLFESLSKVDEHRVISVPYQS 663

Query: 667 VQVDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEV 726
           VQ+D+NINPHLPS+YIN+LENPMEIINEAE+ AE D WSLMQFTENLRRQYGKEP  ME+
Sbjct: 664 VQIDLNINPHLPSDYINYLENPMEIINEAEKAAETDIWSLMQFTENLRRQYGKEPSSMEI 723

Query: 727 LLKKLYLRRMAADIGINRIYSSGKTVFMKANITKKVFKMMTDSMTSDIYRNSLVLEGDQI 786
           +LKKLY+RRMAADIGI RIY+SGK V M+ N++KKVFK+MTDSM+S+++RNSL  +G++I
Sbjct: 724 ILKKLYVRRMAADIGITRIYASGKMVGMETNMSKKVFKLMTDSMSSEMHRNSLFFDGNEI 783

Query: 787 KAXXXXXXXXXXXXNWIFQCVAELHASLPALIKY 820
           KA            NWIFQC+AELHA LPALIKY
Sbjct: 784 KAELLLELPRAQLLNWIFQCIAELHACLPALIKY 817


>D7L9I4_ARALL (tr|D7L9I4) Putative uncharacterized protein OS=Arabidopsis lyrata
           subsp. lyrata GN=ARALYDRAFT_477305 PE=4 SV=1
          Length = 823

 Score = 1291 bits (3342), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 618/754 (81%), Positives = 687/754 (91%), Gaps = 4/754 (0%)

Query: 71  DNDPISLLNERIRRDHGKREVSRTVMDKKEAEKYIQLVKEQQQRGLQKLKGERVGKD--- 127
           ++D ISLLNERIRRD GKRE +R  MD +E EKYIQ+VKEQQ+RGLQKLKG R G +   
Sbjct: 70  ESDSISLLNERIRRDIGKRETARPAMDSEETEKYIQMVKEQQERGLQKLKGIRQGTEAAG 129

Query: 128 -GNFSYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPV 186
            G FSYKVDPY+L +GDYVVHKKVGIG F+GIK DVPK+S+EP EYVFIEYADGMAKLP+
Sbjct: 130 TGGFSYKVDPYSLLSGDYVVHKKVGIGRFVGIKFDVPKDSSEPLEYVFIEYADGMAKLPL 189

Query: 187 KQSSKMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQR 246
           KQ+S++LYRY LPNE K+P+ LS+L+DTSVWE+RKTKGKVAIQKMVVDLMELYLHRL+Q+
Sbjct: 190 KQASRLLYRYNLPNETKRPRTLSRLSDTSVWERRKTKGKVAIQKMVVDLMELYLHRLRQK 249

Query: 247 RPPYPKSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVAL 306
           R PYPK+P MA+F AQFPY  TPDQKQAF+DVEKDLTERETPMDRLICGDVGFGKTEVAL
Sbjct: 250 RYPYPKNPIMADFAAQFPYNATPDQKQAFLDVEKDLTERETPMDRLICGDVGFGKTEVAL 309

Query: 307 RAIRCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLES 366
           RAI CVVSA KQAMVLAPTIVLAKQH+DVISERF++YP IKVGLLSRFQTKAEKEE+LE 
Sbjct: 310 RAIFCVVSAGKQAMVLAPTIVLAKQHYDVISERFSLYPQIKVGLLSRFQTKAEKEEYLEM 369

Query: 367 IKSGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATP 426
           IK G L+IIVGTHSLLG+RVVYSNLGLLVVDEEQRFGVKQKEKIA+FKTSVDVLTLSATP
Sbjct: 370 IKDGHLNIIVGTHSLLGSRVVYSNLGLLVVDEEQRFGVKQKEKIASFKTSVDVLTLSATP 429

Query: 427 IPRTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPR 486
           IPRTLYLALTGFRDASLI+TPPPER+PIKTHLSSF KEKVI AIK ELDRGGQVFYVLPR
Sbjct: 430 IPRTLYLALTGFRDASLISTPPPERIPIKTHLSSFRKEKVIEAIKNELDRGGQVFYVLPR 489

Query: 487 IKGLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQ 546
           IKGLEEVM+FLEE+FPD++IA+ HGKQYSKQLE+TME+FA G+IKILI TNIVESGLDIQ
Sbjct: 490 IKGLEEVMDFLEEAFPDIDIAMAHGKQYSKQLEETMERFAQGKIKILICTNIVESGLDIQ 549

Query: 547 NANTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRE 606
           NANTII+QDVQQFGLAQLYQLRGRVGRADKEA+AYL YPDK+LLSDQALERLSALEECRE
Sbjct: 550 NANTIIIQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLSALEECRE 609

Query: 607 LGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHS 666
           LGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEE R+ +VPY  
Sbjct: 610 LGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEELRIFSVPYDL 669

Query: 667 VQVDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEV 726
           V++DININP LPSEY+N+LENPMEIINEAE+ AEKD WSLMQFTENLRRQYGKEP  ME+
Sbjct: 670 VKIDININPRLPSEYVNYLENPMEIINEAEKAAEKDMWSLMQFTENLRRQYGKEPYSMEI 729

Query: 727 LLKKLYLRRMAADIGINRIYSSGKTVFMKANITKKVFKMMTDSMTSDIYRNSLVLEGDQI 786
           +LKKLY+RRMAAD+G+NRIY+SGK V MK N++KKVFK++TDSMT D+YR+SL+ EGDQI
Sbjct: 730 ILKKLYVRRMAADLGVNRIYASGKMVVMKTNMSKKVFKLITDSMTCDVYRSSLIYEGDQI 789

Query: 787 KAXXXXXXXXXXXXNWIFQCVAELHASLPALIKY 820
            A            NW+FQC++ELHASLPALIKY
Sbjct: 790 MAELLLELPREQLLNWMFQCLSELHASLPALIKY 823


>F4JFJ3_ARATH (tr|F4JFJ3) Putative DEAD/DEAH box helicase OS=Arabidopsis thaliana
           GN=AT3G02060 PE=2 SV=1
          Length = 823

 Score = 1288 bits (3334), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 616/754 (81%), Positives = 687/754 (91%), Gaps = 4/754 (0%)

Query: 71  DNDPISLLNERIRRDHGKREVSRTVMDKKEAEKYIQLVKEQQQRGLQKLKGERVGK---- 126
           ++D ISLLNERIRRD GKRE +R  MD +EAEKYI +VKEQQ+RGLQKLKG R G     
Sbjct: 70  ESDSISLLNERIRRDLGKRETARPAMDSEEAEKYIHMVKEQQERGLQKLKGIRQGTKAAG 129

Query: 127 DGNFSYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPV 186
           DG FSYKVDPY+L +GDYVVHKKVGIG F+GIK DVPK+S+EP EYVFIEYADGMAKLP+
Sbjct: 130 DGAFSYKVDPYSLLSGDYVVHKKVGIGRFVGIKFDVPKDSSEPLEYVFIEYADGMAKLPL 189

Query: 187 KQSSKMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQR 246
           KQ+S++LYRY LPNE K+P+ LS+L+DTSVWE+RKTKGKVAIQKMVVDLMELYLHRL+Q+
Sbjct: 190 KQASRLLYRYNLPNETKRPRTLSRLSDTSVWERRKTKGKVAIQKMVVDLMELYLHRLRQK 249

Query: 247 RPPYPKSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVAL 306
           R PYPK+P MA+F AQFPY  TPDQKQAF+DVEKDLTERETPMDRLICGDVGFGKTEVAL
Sbjct: 250 RYPYPKNPIMADFAAQFPYNATPDQKQAFLDVEKDLTERETPMDRLICGDVGFGKTEVAL 309

Query: 307 RAIRCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLES 366
           RAI CVVS  KQAMVLAPTIVLAKQH+DVISERF++YP IKVGLLSRFQTKAEKEE+LE 
Sbjct: 310 RAIFCVVSTGKQAMVLAPTIVLAKQHYDVISERFSLYPHIKVGLLSRFQTKAEKEEYLEM 369

Query: 367 IKSGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATP 426
           IK+G L+IIVGTHSLLG+RVVYSNLGLLVVDEEQRFGVKQKEKIA+FKTSVDVLTLSATP
Sbjct: 370 IKTGHLNIIVGTHSLLGSRVVYSNLGLLVVDEEQRFGVKQKEKIASFKTSVDVLTLSATP 429

Query: 427 IPRTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPR 486
           IPRTLYLALTGFRDASLI+TPPPER+PIKTHLSSF KEKVI AIK ELDRGGQVFYVLPR
Sbjct: 430 IPRTLYLALTGFRDASLISTPPPERIPIKTHLSSFRKEKVIEAIKNELDRGGQVFYVLPR 489

Query: 487 IKGLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQ 546
           IKGLEEVM+FLEE+FPD++IA+ HGKQYSKQLE+TME+FA G+IKILI TNIVESGLDIQ
Sbjct: 490 IKGLEEVMDFLEEAFPDIDIAMAHGKQYSKQLEETMERFAQGKIKILICTNIVESGLDIQ 549

Query: 547 NANTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRE 606
           NANTII+QDVQQFGLAQLYQLRGRVGRADKEA+AYL YPDK+LLSDQALERLSALEECRE
Sbjct: 550 NANTIIIQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLSALEECRE 609

Query: 607 LGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHS 666
           LGQGFQLAE+DMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEE R+ +VPY  
Sbjct: 610 LGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEELRIFSVPYDL 669

Query: 667 VQVDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEV 726
           V++DININP LPSEY+N+LENPMEII+EAE+ AEKD WSLMQFTENLRRQYGKEP  ME+
Sbjct: 670 VKIDININPRLPSEYVNYLENPMEIIHEAEKAAEKDMWSLMQFTENLRRQYGKEPYSMEI 729

Query: 727 LLKKLYLRRMAADIGINRIYSSGKTVFMKANITKKVFKMMTDSMTSDIYRNSLVLEGDQI 786
           +LKKLY+RRMAAD+G+NRIY+SGK V MK N++KKVFK++TDSMT D+YR+SL+ EGDQI
Sbjct: 730 ILKKLYVRRMAADLGVNRIYASGKMVVMKTNMSKKVFKLITDSMTCDVYRSSLIYEGDQI 789

Query: 787 KAXXXXXXXXXXXXNWIFQCVAELHASLPALIKY 820
            A            NW+FQC++ELHASLPALIKY
Sbjct: 790 MAELLLELPREQLLNWMFQCLSELHASLPALIKY 823


>Q9SGA4_ARATH (tr|Q9SGA4) Putative DEAD/DEAH box helicase OS=Arabidopsis thaliana
           GN=F1C9.16 PE=4 SV=1
          Length = 822

 Score = 1288 bits (3332), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 616/754 (81%), Positives = 687/754 (91%), Gaps = 4/754 (0%)

Query: 71  DNDPISLLNERIRRDHGKREVSRTVMDKKEAEKYIQLVKEQQQRGLQKLKGERVGK---- 126
           ++D ISLLNERIRRD GKRE +R  MD +EAEKYI +VKEQQ+RGLQKLKG R G     
Sbjct: 69  ESDSISLLNERIRRDLGKRETARPAMDSEEAEKYIHMVKEQQERGLQKLKGIRQGTKAAG 128

Query: 127 DGNFSYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPV 186
           DG FSYKVDPY+L +GDYVVHKKVGIG F+GIK DVPK+S+EP EYVFIEYADGMAKLP+
Sbjct: 129 DGAFSYKVDPYSLLSGDYVVHKKVGIGRFVGIKFDVPKDSSEPLEYVFIEYADGMAKLPL 188

Query: 187 KQSSKMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQR 246
           KQ+S++LYRY LPNE K+P+ LS+L+DTSVWE+RKTKGKVAIQKMVVDLMELYLHRL+Q+
Sbjct: 189 KQASRLLYRYNLPNETKRPRTLSRLSDTSVWERRKTKGKVAIQKMVVDLMELYLHRLRQK 248

Query: 247 RPPYPKSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVAL 306
           R PYPK+P MA+F AQFPY  TPDQKQAF+DVEKDLTERETPMDRLICGDVGFGKTEVAL
Sbjct: 249 RYPYPKNPIMADFAAQFPYNATPDQKQAFLDVEKDLTERETPMDRLICGDVGFGKTEVAL 308

Query: 307 RAIRCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLES 366
           RAI CVVS  KQAMVLAPTIVLAKQH+DVISERF++YP IKVGLLSRFQTKAEKEE+LE 
Sbjct: 309 RAIFCVVSTGKQAMVLAPTIVLAKQHYDVISERFSLYPHIKVGLLSRFQTKAEKEEYLEM 368

Query: 367 IKSGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATP 426
           IK+G L+IIVGTHSLLG+RVVYSNLGLLVVDEEQRFGVKQKEKIA+FKTSVDVLTLSATP
Sbjct: 369 IKTGHLNIIVGTHSLLGSRVVYSNLGLLVVDEEQRFGVKQKEKIASFKTSVDVLTLSATP 428

Query: 427 IPRTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPR 486
           IPRTLYLALTGFRDASLI+TPPPER+PIKTHLSSF KEKVI AIK ELDRGGQVFYVLPR
Sbjct: 429 IPRTLYLALTGFRDASLISTPPPERIPIKTHLSSFRKEKVIEAIKNELDRGGQVFYVLPR 488

Query: 487 IKGLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQ 546
           IKGLEEVM+FLEE+FPD++IA+ HGKQYSKQLE+TME+FA G+IKILI TNIVESGLDIQ
Sbjct: 489 IKGLEEVMDFLEEAFPDIDIAMAHGKQYSKQLEETMERFAQGKIKILICTNIVESGLDIQ 548

Query: 547 NANTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRE 606
           NANTII+QDVQQFGLAQLYQLRGRVGRADKEA+AYL YPDK+LLSDQALERLSALEECRE
Sbjct: 549 NANTIIIQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLSALEECRE 608

Query: 607 LGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHS 666
           LGQGFQLAE+DMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEE R+ +VPY  
Sbjct: 609 LGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEELRIFSVPYDL 668

Query: 667 VQVDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEV 726
           V++DININP LPSEY+N+LENPMEII+EAE+ AEKD WSLMQFTENLRRQYGKEP  ME+
Sbjct: 669 VKIDININPRLPSEYVNYLENPMEIIHEAEKAAEKDMWSLMQFTENLRRQYGKEPYSMEI 728

Query: 727 LLKKLYLRRMAADIGINRIYSSGKTVFMKANITKKVFKMMTDSMTSDIYRNSLVLEGDQI 786
           +LKKLY+RRMAAD+G+NRIY+SGK V MK N++KKVFK++TDSMT D+YR+SL+ EGDQI
Sbjct: 729 ILKKLYVRRMAADLGVNRIYASGKMVVMKTNMSKKVFKLITDSMTCDVYRSSLIYEGDQI 788

Query: 787 KAXXXXXXXXXXXXNWIFQCVAELHASLPALIKY 820
            A            NW+FQC++ELHASLPALIKY
Sbjct: 789 MAELLLELPREQLLNWMFQCLSELHASLPALIKY 822


>Q94JY9_ARATH (tr|Q94JY9) Putative helicase OS=Arabidopsis thaliana GN=F1C9.16
           PE=2 SV=1
          Length = 823

 Score = 1285 bits (3325), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 615/754 (81%), Positives = 686/754 (90%), Gaps = 4/754 (0%)

Query: 71  DNDPISLLNERIRRDHGKREVSRTVMDKKEAEKYIQLVKEQQQRGLQKLKGERVGK---- 126
           ++D ISLLNERIRRD GKRE +R  MD +EAEKYI +VKEQQ+RGLQKLKG R G     
Sbjct: 70  ESDSISLLNERIRRDLGKRETARPAMDSEEAEKYIHMVKEQQERGLQKLKGIRQGTKAAG 129

Query: 127 DGNFSYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPV 186
           DG FSYKVDPY+L +GDYVVHKKVGIG F+GIK DVPK+S+EP EYVFIEYADGMAKLP+
Sbjct: 130 DGAFSYKVDPYSLLSGDYVVHKKVGIGRFVGIKFDVPKDSSEPLEYVFIEYADGMAKLPL 189

Query: 187 KQSSKMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQR 246
           KQ+S++LYRY LPNE K+P+ LS+L+DTSVWE+RKTKGKVAIQKMVVDLM LYLHRL+Q+
Sbjct: 190 KQASRLLYRYNLPNETKRPRTLSRLSDTSVWERRKTKGKVAIQKMVVDLMGLYLHRLRQK 249

Query: 247 RPPYPKSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVAL 306
           R PYPK+P MA+F AQFPY  TPDQKQAF+DVEKDLTERETPMDRLICGDVGFGKTEVAL
Sbjct: 250 RYPYPKNPIMADFAAQFPYNATPDQKQAFLDVEKDLTERETPMDRLICGDVGFGKTEVAL 309

Query: 307 RAIRCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLES 366
           RAI CVVS  KQAMVLAPTIVLAKQH+DVISERF++YP IKVGLLSRFQTKAEKEE+LE 
Sbjct: 310 RAIFCVVSTGKQAMVLAPTIVLAKQHYDVISERFSLYPHIKVGLLSRFQTKAEKEEYLEM 369

Query: 367 IKSGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATP 426
           IK+G L+IIVGTHSLLG+RVVYSNLGLLVVDEEQRFGVKQKEKIA+FKTSVDVLTLSATP
Sbjct: 370 IKTGHLNIIVGTHSLLGSRVVYSNLGLLVVDEEQRFGVKQKEKIASFKTSVDVLTLSATP 429

Query: 427 IPRTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPR 486
           IPRTLYLALTGFRDASLI+TPPPER+PIKTHLSSF KEKVI AIK ELDRGGQVFYVLPR
Sbjct: 430 IPRTLYLALTGFRDASLISTPPPERIPIKTHLSSFRKEKVIEAIKNELDRGGQVFYVLPR 489

Query: 487 IKGLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQ 546
           IKGLEEVM+FLEE+FPD++IA+ HGKQYSKQLE+TME+FA G+IKILI TNIVESGLDIQ
Sbjct: 490 IKGLEEVMDFLEEAFPDIDIAMAHGKQYSKQLEETMERFAQGKIKILICTNIVESGLDIQ 549

Query: 547 NANTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRE 606
           NANTII+QDVQQFGLAQLYQLRGRVGRADKEA+AYL YPDK+LLSDQALERLSALEECRE
Sbjct: 550 NANTIIIQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLSALEECRE 609

Query: 607 LGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHS 666
           LGQGFQLAE+DMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEE R+ +VPY  
Sbjct: 610 LGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEELRIFSVPYDL 669

Query: 667 VQVDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEV 726
           V++DININP LPSEY+N+LENPMEII+EAE+ AEKD WSLMQFTENLRRQYGKEP  ME+
Sbjct: 670 VKIDININPRLPSEYVNYLENPMEIIHEAEKAAEKDMWSLMQFTENLRRQYGKEPYSMEI 729

Query: 727 LLKKLYLRRMAADIGINRIYSSGKTVFMKANITKKVFKMMTDSMTSDIYRNSLVLEGDQI 786
           +LKKLY+RRMAAD+G+NRIY+SGK V MK N++KKVFK++TDSMT D+YR+SL+ EGDQI
Sbjct: 730 ILKKLYVRRMAADLGVNRIYASGKMVVMKTNMSKKVFKLITDSMTCDVYRSSLIYEGDQI 789

Query: 787 KAXXXXXXXXXXXXNWIFQCVAELHASLPALIKY 820
            A            NW+FQC++ELHASLPALIKY
Sbjct: 790 MAELLLELPREQLLNWMFQCLSELHASLPALIKY 823


>Q8H0S6_ARATH (tr|Q8H0S6) Putative helicase OS=Arabidopsis thaliana GN=At3g02060
           PE=1 SV=1
          Length = 822

 Score = 1284 bits (3323), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 615/754 (81%), Positives = 686/754 (90%), Gaps = 4/754 (0%)

Query: 71  DNDPISLLNERIRRDHGKREVSRTVMDKKEAEKYIQLVKEQQQRGLQKLKGERVGK---- 126
           ++D ISLLNERIRRD GKRE +R  MD +EAEKYI +VKEQQ+RGLQKLKG R G     
Sbjct: 69  ESDSISLLNERIRRDLGKRETARPAMDSEEAEKYIHMVKEQQERGLQKLKGIRQGTKAAG 128

Query: 127 DGNFSYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPV 186
           DG FSYKVDPY+L +GDYVVHKKVGIG F+GIK DVPK+S+EP EYVFIEYADGMAKLP+
Sbjct: 129 DGAFSYKVDPYSLLSGDYVVHKKVGIGRFVGIKFDVPKDSSEPLEYVFIEYADGMAKLPL 188

Query: 187 KQSSKMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQR 246
           KQ+S++LYRY LPNE K+P+ LS+L+DTSVWE+RKTKGKVAIQKMVVDLM LYLHRL+Q+
Sbjct: 189 KQASRLLYRYNLPNETKRPRTLSRLSDTSVWERRKTKGKVAIQKMVVDLMGLYLHRLRQK 248

Query: 247 RPPYPKSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVAL 306
           R PYPK+P MA+F AQFPY  TPDQKQAF+DVEKDLTERETPMDRLICGDVGFGKTEVAL
Sbjct: 249 RYPYPKNPIMADFAAQFPYNATPDQKQAFLDVEKDLTERETPMDRLICGDVGFGKTEVAL 308

Query: 307 RAIRCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLES 366
           RAI CVVS  KQAMVLAPTIVLAKQH+DVISERF++YP IKVGLLSRFQTKAEKEE+LE 
Sbjct: 309 RAIFCVVSTGKQAMVLAPTIVLAKQHYDVISERFSLYPHIKVGLLSRFQTKAEKEEYLEM 368

Query: 367 IKSGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATP 426
           IK+G L+IIVGTHSLLG+RVVYSNLGLLVVDEEQRFGVKQKEKIA+FKTSVDVLTLSATP
Sbjct: 369 IKTGHLNIIVGTHSLLGSRVVYSNLGLLVVDEEQRFGVKQKEKIASFKTSVDVLTLSATP 428

Query: 427 IPRTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPR 486
           IPRTLYLALTGFRDASLI+TPPPER+PIKTHLSSF KEKVI AIK ELDRGGQVFYVLPR
Sbjct: 429 IPRTLYLALTGFRDASLISTPPPERIPIKTHLSSFRKEKVIEAIKNELDRGGQVFYVLPR 488

Query: 487 IKGLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQ 546
           IKGLEEVM+FLEE+FPD++IA+ HGKQYSKQLE+TME+FA G+IKILI TNIVESGLDIQ
Sbjct: 489 IKGLEEVMDFLEEAFPDIDIAMAHGKQYSKQLEETMERFAQGKIKILICTNIVESGLDIQ 548

Query: 547 NANTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRE 606
           NANTII+QDVQQFGLAQLYQLRGRVGRADKEA+AYL YPDK+LLSDQALERLSALEECRE
Sbjct: 549 NANTIIIQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLSALEECRE 608

Query: 607 LGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHS 666
           LGQGFQLAE+DMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEE R+ +VPY  
Sbjct: 609 LGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEELRIFSVPYDL 668

Query: 667 VQVDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEV 726
           V++DININP LPSEY+N+LENPMEII+EAE+ AEKD WSLMQFTENLRRQYGKEP  ME+
Sbjct: 669 VKIDININPRLPSEYVNYLENPMEIIHEAEKAAEKDMWSLMQFTENLRRQYGKEPYSMEI 728

Query: 727 LLKKLYLRRMAADIGINRIYSSGKTVFMKANITKKVFKMMTDSMTSDIYRNSLVLEGDQI 786
           +LKKLY+RRMAAD+G+NRIY+SGK V MK N++KKVFK++TDSMT D+YR+SL+ EGDQI
Sbjct: 729 ILKKLYVRRMAADLGVNRIYASGKMVVMKTNMSKKVFKLITDSMTCDVYRSSLIYEGDQI 788

Query: 787 KAXXXXXXXXXXXXNWIFQCVAELHASLPALIKY 820
            A            NW+FQC++ELHASLPALIKY
Sbjct: 789 MAELLLELPREQLLNWMFQCLSELHASLPALIKY 822


>M5XIH5_PRUPE (tr|M5XIH5) Uncharacterized protein OS=Prunus persica
           GN=PRUPE_ppa001550mg PE=4 SV=1
          Length = 804

 Score = 1276 bits (3301), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 616/749 (82%), Positives = 683/749 (91%), Gaps = 11/749 (1%)

Query: 72  NDPISLLNERIRRDHGKREVSRTVMDKKEAEKYIQLVKEQQQRGLQKLKGERVGKDGNFS 131
            D IS +NERIRR+  KRE +RTVMD +EA+KYI+LVK+QQQRGL+KL+G+        S
Sbjct: 67  GDAISFVNERIRREQSKRE-TRTVMDSEEADKYIELVKQQQQRGLEKLRGDA-------S 118

Query: 132 YKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSSK 191
           YKVDPYTLR+GDYVVHKKVGIG F+GIK DV  ++AE   YVFIEYADGMAKLPVKQ+S+
Sbjct: 119 YKVDPYTLRSGDYVVHKKVGIGRFVGIKFDVSNSTAE---YVFIEYADGMAKLPVKQASR 175

Query: 192 MLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPYP 251
           +LYRY LPNE K+P+ LSKL+DTSVWEKRKTKGK+AIQKMVVDLMELYLHRLKQRRPPYP
Sbjct: 176 LLYRYSLPNETKRPRTLSKLSDTSVWEKRKTKGKIAIQKMVVDLMELYLHRLKQRRPPYP 235

Query: 252 KSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAIRC 311
           K+ AM  F +QFPYEPTPDQKQAFIDV KDLTERETPMDRLICGDVGFGKTEVALRAI C
Sbjct: 236 KTNAMTHFVSQFPYEPTPDQKQAFIDVHKDLTERETPMDRLICGDVGFGKTEVALRAIFC 295

Query: 312 VVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKSGE 371
           VVSA KQAMVLAPTIVLAKQHFDVIS+RF+VYP+IKVGLLSRFQT+AEKEEHL+ IK+G 
Sbjct: 296 VVSAGKQAMVLAPTIVLAKQHFDVISDRFSVYPNIKVGLLSRFQTRAEKEEHLDMIKNGR 355

Query: 372 LDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPRTL 431
           LDIIVGTHSLLG+RVVY+NLGLLVVDEEQRFGVKQKEKIA+FKTSVDVLTLSATPIPRTL
Sbjct: 356 LDIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKTSVDVLTLSATPIPRTL 415

Query: 432 YLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKGLE 491
           YLALTGFRDASLI+TPPPERVPIK+HLS++SKEKV+SAIK+ELDRGGQVFYVLPRIKGLE
Sbjct: 416 YLALTGFRDASLISTPPPERVPIKSHLSAYSKEKVLSAIKHELDRGGQVFYVLPRIKGLE 475

Query: 492 EVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNANTI 551
           EVMEFLE+SFP+VEIAI HGKQYSKQLE+TMEKFA GEIKILI TNIVESGLDIQNANTI
Sbjct: 476 EVMEFLEQSFPNVEIAIAHGKQYSKQLEETMEKFAQGEIKILICTNIVESGLDIQNANTI 535

Query: 552 IVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQGF 611
           I+QDVQQFGLAQLYQLRGRVGRADKEA+A+L YP+K+LL+DQALERL+ALEEC ELGQGF
Sbjct: 536 IIQDVQQFGLAQLYQLRGRVGRADKEAHAHLFYPEKSLLTDQALERLAALEECCELGQGF 595

Query: 612 QLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQVDI 671
           QLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKV+EHRVV+VPY SV++DI
Sbjct: 596 QLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVDEHRVVSVPYWSVEIDI 655

Query: 672 NINPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLLKKL 731
           NINPHLPSEYIN+LENPMEII EAE+ AEKD WSLMQ+ ENLR QYGKEP  ME+LLKKL
Sbjct: 656 NINPHLPSEYINYLENPMEIIQEAEKAAEKDIWSLMQYAENLRCQYGKEPPSMEILLKKL 715

Query: 732 YLRRMAADIGINRIYSSGKTVFMKANITKKVFKMMTDSMTSDIYRNSLVLEGDQIKAXXX 791
           Y+RRMAAD+GI +IY+SGK VFMK ++ KKVFK++TDSM SD++RNSLV  GDQIKA   
Sbjct: 716 YVRRMAADLGITKIYASGKMVFMKTSMNKKVFKLITDSMVSDVHRNSLVFGGDQIKAELL 775

Query: 792 XXXXXXXXXNWIFQCVAELHASLPALIKY 820
                    NWIFQC+AELHASLPALIKY
Sbjct: 776 LELPREQLLNWIFQCLAELHASLPALIKY 804


>K4BDQ4_SOLLC (tr|K4BDQ4) Uncharacterized protein OS=Solanum lycopersicum
           GN=Solyc02g094590.2 PE=4 SV=1
          Length = 826

 Score = 1257 bits (3253), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 604/783 (77%), Positives = 687/783 (87%), Gaps = 12/783 (1%)

Query: 50  TKAVYTQGLYVSAPP---PSKTDLDNDPISLLNERIRRDHGKREVS--RTVMDKKEAEKY 104
           T  +    ++   PP    ++ + + D ISLLNERIRR+H KR+ S  R  MD +EA+KY
Sbjct: 44  TNVLNADAVHTKLPPRLRNARQEQERDAISLLNERIRREHAKRDHSPLRPAMDSEEADKY 103

Query: 105 IQLVKEQQQRGLQKLKGERVGKDG-------NFSYKVDPYTLRNGDYVVHKKVGIGMFIG 157
           IQLVKEQQQRGLQKLK +R  +          FSYKVDPYTLR+GDYVVH+KVGIG F+G
Sbjct: 104 IQLVKEQQQRGLQKLKSDRARQGAPHDAAQPTFSYKVDPYTLRSGDYVVHRKVGIGRFVG 163

Query: 158 IKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSSKMLYRYCLPNENKKPKALSKLNDTSVW 217
           IK DVPK+S EP EYVFIEYADGMAKLPVKQ+S++LYRY LPNE K+P+ LSKL+DTS W
Sbjct: 164 IKFDVPKDSKEPIEYVFIEYADGMAKLPVKQASRLLYRYNLPNETKRPRTLSKLSDTSAW 223

Query: 218 EKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPYPKSPAMAEFTAQFPYEPTPDQKQAFID 277
           E+R+ KGKVA+QKMVVDLMELYLHRLKQ+RPPYPK+PAMAEF +QFP+EPTPDQKQAF D
Sbjct: 224 ERRRMKGKVAVQKMVVDLMELYLHRLKQKRPPYPKTPAMAEFASQFPFEPTPDQKQAFSD 283

Query: 278 VEKDLTERETPMDRLICGDVGFGKTEVALRAIRCVVSAKKQAMVLAPTIVLAKQHFDVIS 337
           VE+DLTE E PMDRLICGDVGFGKTEVALRAI CVVSA KQAMVLAPTIVLAKQHFDVIS
Sbjct: 284 VERDLTESENPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVIS 343

Query: 338 ERFAVYPDIKVGLLSRFQTKAEKEEHLESIKSGELDIIVGTHSLLGNRVVYSNLGLLVVD 397
           ERF+ YP+I+VGLLSRFQTK+EKEE+L  IK G +DIIVGTHSLLGNRV Y+NLGLLVVD
Sbjct: 344 ERFSRYPNIRVGLLSRFQTKSEKEEYLSMIKDGHVDIIVGTHSLLGNRVEYNNLGLLVVD 403

Query: 398 EEQRFGVKQKEKIATFKTSVDVLTLSATPIPRTLYLALTGFRDASLITTPPPERVPIKTH 457
           EEQRFGVKQKE+IA+FKTSVDVLTLSATPIPRTLYLALTGFRDASLI+TPPPERVPI+TH
Sbjct: 404 EEQRFGVKQKERIASFKTSVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERVPIRTH 463

Query: 458 LSSFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEVMEFLEESFPDVEIAIGHGKQYSKQ 517
           LS++SK+KVISAIK+ELDRGG+VFYVLPRIKGLE+VMEFLE +FP VEIAI HGKQYSKQ
Sbjct: 464 LSAYSKDKVISAIKHELDRGGRVFYVLPRIKGLEDVMEFLELAFPHVEIAIAHGKQYSKQ 523

Query: 518 LEDTMEKFALGEIKILISTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKE 577
           LE+TME+FA G+I+ILI TNIVESGLDIQNANTII+QDVQQFGLAQLYQLRGRVGRADKE
Sbjct: 524 LEETMERFARGDIRILICTNIVESGLDIQNANTIIIQDVQQFGLAQLYQLRGRVGRADKE 583

Query: 578 AYAYLLYPDKNLLSDQALERLSALEECRELGQGFQLAERDMGIRGFGTIFGEQQTGDVGN 637
           A+A+L YPDK+LLSD ALERL+ALEEC ELGQGFQLAERDM IRGFG IFGEQQTGDVGN
Sbjct: 584 AHAHLFYPDKSLLSDHALERLAALEECCELGQGFQLAERDMAIRGFGNIFGEQQTGDVGN 643

Query: 638 VGIDLFFEMLFESLSKVEEHRVVAVPYHSVQVDININPHLPSEYINHLENPMEIINEAER 697
           VGIDLFFEMLFESLSKV+EHRV++VPY ++++DININPHLPSEYINHLENPM+IIN AE+
Sbjct: 644 VGIDLFFEMLFESLSKVDEHRVISVPYPAMELDININPHLPSEYINHLENPMQIINSAEK 703

Query: 698 VAEKDTWSLMQFTENLRRQYGKEPRPMEVLLKKLYLRRMAADIGINRIYSSGKTVFMKAN 757
            AEKD ++LMQFTENLRRQYGKEP  ME+LLKKLY+RRMAAD+GI  IY+SGK V MK N
Sbjct: 704 AAEKDIFNLMQFTENLRRQYGKEPYSMEILLKKLYVRRMAADLGITSIYASGKMVGMKTN 763

Query: 758 ITKKVFKMMTDSMTSDIYRNSLVLEGDQIKAXXXXXXXXXXXXNWIFQCVAELHASLPAL 817
           ++KKVFK++TDS TSDI++NSL+ E  QIKA            NWIFQC+AEL++SLP L
Sbjct: 764 MSKKVFKLITDSATSDIHQNSLIFEDGQIKAELLLELPKEQLLNWIFQCLAELYSSLPTL 823

Query: 818 IKY 820
           IKY
Sbjct: 824 IKY 826


>B9RGU4_RICCO (tr|B9RGU4) Dead box ATP-dependent RNA helicase, putative
           OS=Ricinus communis GN=RCOM_1443990 PE=4 SV=1
          Length = 857

 Score = 1223 bits (3165), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 597/727 (82%), Positives = 659/727 (90%), Gaps = 2/727 (0%)

Query: 63  PPPSKTDLDNDPISLLNERIRRDHGKREVSRT-VMDKKEAEKYIQLVKEQQQRGLQKLKG 121
           P     D + D IS+LNERI RD+ KRE S T ++D KEA+KYI++VKEQQQRGLQKLKG
Sbjct: 66  PRKDNVDTEQDSISVLNERIFRDYSKREASSTPILDSKEADKYIKMVKEQQQRGLQKLKG 125

Query: 122 ERVGKDGN-FSYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADG 180
           E+ GK    FSY+VDPY L +GDYVVHKKVG+G F+GIK DV K+S EP EYVFIEYADG
Sbjct: 126 EKQGKGKGGFSYRVDPYLLNSGDYVVHKKVGVGRFVGIKFDVSKSSTEPIEYVFIEYADG 185

Query: 181 MAKLPVKQSSKMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYL 240
           MAKLPVKQ+SKMLYRY LPNE K+P+ L+KLNDTS WEKRKTKGK+AIQKMVVDLMELYL
Sbjct: 186 MAKLPVKQASKMLYRYSLPNEKKRPRTLNKLNDTSTWEKRKTKGKIAIQKMVVDLMELYL 245

Query: 241 HRLKQRRPPYPKSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFG 300
           HRLKQRRPPYPKSP MAEFTAQFPYEPTPDQ QAF DVEKDLTERETPMDRLICGDVGFG
Sbjct: 246 HRLKQRRPPYPKSPVMAEFTAQFPYEPTPDQFQAFNDVEKDLTERETPMDRLICGDVGFG 305

Query: 301 KTEVALRAIRCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEK 360
           KTEVALRAI CVVSA KQAMVLAPTIVLAKQHF+VISERF+ Y +IKVGLLSRFQT++ K
Sbjct: 306 KTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFEVISERFSKYSNIKVGLLSRFQTQSVK 365

Query: 361 EEHLESIKSGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVL 420
           E + E IK G+L+I+VGTHSLLG+RVVY+NLGLLVVDEEQRFGVKQKEKIA+FKTSVDVL
Sbjct: 366 EMYYEMIKQGDLNIVVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKTSVDVL 425

Query: 421 TLSATPIPRTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQV 480
           TLSATPIPRTLYLALTGFRDASLI+T PPERVP+KT LS++SKEKVISAIKYELDR GQV
Sbjct: 426 TLSATPIPRTLYLALTGFRDASLISTAPPERVPVKTFLSAYSKEKVISAIKYELDRDGQV 485

Query: 481 FYVLPRIKGLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVE 540
           FYVLP IKGLEEVM+FLE+SFP VE AI HGKQYSKQLE+TMEKF  GEIKILI TNIVE
Sbjct: 486 FYVLPLIKGLEEVMDFLEQSFPKVEKAIAHGKQYSKQLEETMEKFVQGEIKILICTNIVE 545

Query: 541 SGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSA 600
           SGLDIQNANTII+QD+Q FGLAQLYQLRGRVGRADKEAYA+L YPDK+LLSDQALERL A
Sbjct: 546 SGLDIQNANTIIIQDIQHFGLAQLYQLRGRVGRADKEAYAHLFYPDKSLLSDQALERLKA 605

Query: 601 LEECRELGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVV 660
           LEEC+ELGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVV
Sbjct: 606 LEECKELGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVV 665

Query: 661 AVPYHSVQVDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKE 720
           AV Y SVQ+D+N+NPHLPS+YIN+LENPMEII++AE+ AEKD WSLMQFTE+LRRQYGKE
Sbjct: 666 AVSYQSVQIDLNVNPHLPSDYINYLENPMEIISQAEKAAEKDIWSLMQFTESLRRQYGKE 725

Query: 721 PRPMEVLLKKLYLRRMAADIGINRIYSSGKTVFMKANITKKVFKMMTDSMTSDIYRNSLV 780
           P  ME+LLKKLY+RRMAAD+GI RIY+SGK V MK N++KKVFK+M DSMTSD++RNSL 
Sbjct: 726 PYSMEILLKKLYVRRMAADLGIRRIYASGKMVGMKTNLSKKVFKLMIDSMTSDVHRNSLE 785

Query: 781 LEGDQIK 787
            +GDQIK
Sbjct: 786 FDGDQIK 792


>B9GNF6_POPTR (tr|B9GNF6) Predicted protein OS=Populus trichocarpa
           GN=POPTRDRAFT_756198 PE=2 SV=1
          Length = 939

 Score = 1217 bits (3148), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 611/829 (73%), Positives = 685/829 (82%), Gaps = 57/829 (6%)

Query: 13  TTPFIXXXXXXXXXXXXFILSYPLHQKTIKRLTLPSPTKAVYTQ-GLYVSA---PPPSKT 68
           +TP I            F L YP   K     +L   T A +TQ  L  S+    P  K 
Sbjct: 7   STPLIFKLNSSAKPRKLFSLKYPCRHKHRPSFSL---TNAAHTQTALPFSSRTTTPKYKI 63

Query: 69  DLDNDPISLLNERIRRDH-GKREVSRT--VMDKKEAEKYIQLVKEQQQRGLQKLKGERVG 125
           + + DPIS+LNERIRR H GKRE S +  +MD +EA++YIQ+VKEQQQRGLQKLKG+RV 
Sbjct: 64  ESEQDPISILNERIRRQHHGKREGSNSKPIMDSEEADQYIQMVKEQQQRGLQKLKGDRVA 123

Query: 126 KDGN-FSYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKL 184
           K+G+ FSYKVDPYTL +GDYVVHKKVGIG F+GIK D+ K S+E  EYVFIEYADGMAKL
Sbjct: 124 KEGDVFSYKVDPYTLSSGDYVVHKKVGIGRFVGIKFDMSKGSSEAIEYVFIEYADGMAKL 183

Query: 185 PVKQSSKMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLK 244
           PVKQ+S+MLYRY LPN+ KKP+ LSKL+D   WE+RKTKGKVAIQKMVVDLMELYLHRLK
Sbjct: 184 PVKQASRMLYRYNLPNDTKKPRTLSKLSDNGAWERRKTKGKVAIQKMVVDLMELYLHRLK 243

Query: 245 QRRPPYPKSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEV 304
           QRRPPYPK+PAM +F+AQFPYEPTPDQKQAFIDV +DLTERETPMDRLICGDVGFGKTEV
Sbjct: 244 QRRPPYPKTPAMVDFSAQFPYEPTPDQKQAFIDVMRDLTERETPMDRLICGDVGFGKTEV 303

Query: 305 ALRAIRCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQ------TKA 358
           ALRAI CVVSA KQAMVLAPTIVLA+QHFDVISERF+ YP IKV LLSRFQ      +KA
Sbjct: 304 ALRAIFCVVSAGKQAMVLAPTIVLARQHFDVISERFSKYPHIKVALLSRFQAYLLLQSKA 363

Query: 359 EKEEHLESIKSGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQ------------------ 400
           EKE +LE  K G LDIIVGTHSLLG+RVVY+NLGLLVVDEEQ                  
Sbjct: 364 EKEMYLEMTKHGHLDIIVGTHSLLGSRVVYNNLGLLVVDEEQTTNKRKGKGNFSINHDFA 423

Query: 401 ---------RFGVKQKEKIATFKTSVDVLTLSATPIPRTLYLALTGFRDASLITTPPPER 451
                    RFGVKQKEKIA+FKTSVDVLTL+ATPIPRTLYLALTGFRDASLI+TPPPER
Sbjct: 424 NEKEKKESRRFGVKQKEKIASFKTSVDVLTLTATPIPRTLYLALTGFRDASLISTPPPER 483

Query: 452 VPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEVMEFLEESFPDVEIAIGHG 511
           VPIKTHLS++SKE++ISAIKYELDRGGQVFYVLPRIKGLEEV +FLE+SF +VEIA+ HG
Sbjct: 484 VPIKTHLSAYSKERLISAIKYELDRGGQVFYVLPRIKGLEEVKDFLEQSFSNVEIAVAHG 543

Query: 512 -------------KQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNANTIIVQDVQQ 558
                        KQYSK LEDTME+FA GEIKILI TNIVESGLDIQNANTII+QDVQ 
Sbjct: 544 QHVTKKGNSFLLVKQYSKLLEDTMEQFAQGEIKILICTNIVESGLDIQNANTIIIQDVQL 603

Query: 559 FGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQGFQLAERDM 618
           FGLAQLYQLRGRVGRADKEA+A+L YPDK++L+DQALERL+ALEEC+ELG+GFQLAERDM
Sbjct: 604 FGLAQLYQLRGRVGRADKEAHAHLFYPDKSMLTDQALERLAALEECQELGRGFQLAERDM 663

Query: 619 GIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQVDININPHLP 678
           GIRGFGTIFGEQQTGDVGNVGID FFEMLFESLSKV+EHRV++VPY SVQVD+NINPHLP
Sbjct: 664 GIRGFGTIFGEQQTGDVGNVGIDFFFEMLFESLSKVDEHRVISVPYQSVQVDLNINPHLP 723

Query: 679 SEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLLKKLYLRRMAA 738
           S+YIN LENPMEIINEAE+ AE D WSLMQFTENLR QYGKEP  ME+LLKKLY+RRMAA
Sbjct: 724 SDYINSLENPMEIINEAEKAAETDIWSLMQFTENLRCQYGKEPCSMEILLKKLYIRRMAA 783

Query: 739 DIGINRIYSSGKTVFMKANITKKVFKMMTDSMTSDIYRNSLVLEGDQIK 787
           DIGI RIY+SGK V M+ N++KKVFK+M DSM+SDI+RNSLV +G+QIK
Sbjct: 784 DIGITRIYASGKMVGMETNMSKKVFKLMADSMSSDIHRNSLVFDGNQIK 832


>K3ZHH3_SETIT (tr|K3ZHH3) Uncharacterized protein OS=Setaria italica
           GN=Si026025m.g PE=4 SV=1
          Length = 729

 Score =  982 bits (2539), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/697 (65%), Positives = 579/697 (83%), Gaps = 6/697 (0%)

Query: 124 VGKDGNFSYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAK 183
           V    +  ++VDP  L  G+YVVHKKVG+G F  I      ++ +  +YVFI+YAD MAK
Sbjct: 39  VAAGSSLGHRVDPRELEPGEYVVHKKVGVGKFACI------SAEDGVDYVFIQYADAMAK 92

Query: 184 LPVKQSSKMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRL 243
           L V Q+++MLYRY LP+E K+P+ LSKLND S WEKR+ KGK+A+QKMVV+LMELYL R+
Sbjct: 93  LAVDQAARMLYRYNLPHEKKRPRNLSKLNDPSTWEKRRLKGKLAVQKMVVNLMELYLQRM 152

Query: 244 KQRRPPYPKSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTE 303
           +Q RPPYPK  AM EF A+FPYEPTPDQ QAFIDVEKDLTERETPMDRLICGDVGFGKTE
Sbjct: 153 RQSRPPYPKPVAMEEFAAEFPYEPTPDQCQAFIDVEKDLTERETPMDRLICGDVGFGKTE 212

Query: 304 VALRAIRCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEH 363
           VA+RAI  V+SA  QAMVLAPTI+LAKQH+DV++ERFA YPDIKV + S  QTK EK++ 
Sbjct: 213 VAMRAIFIVISAGYQAMVLAPTIILAKQHYDVMTERFANYPDIKVAIFSGAQTKDEKDDL 272

Query: 364 LESIKSGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLS 423
           +  IK+G+L IIVGTH+LL  R+ YSNLGLLVVDEEQ+FGV+QKEKIA++K+S+DVLTLS
Sbjct: 273 ITKIKNGDLHIIVGTHALLTERMAYSNLGLLVVDEEQKFGVQQKEKIASYKSSIDVLTLS 332

Query: 424 ATPIPRTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYV 483
           ATPIPRTLYLALTGFRDASL++TPPPERV +KT++S+FSKE+ +S IK+EL RGGQVFYV
Sbjct: 333 ATPIPRTLYLALTGFRDASLMSTPPPERVAVKTYVSAFSKERALSTIKFELQRGGQVFYV 392

Query: 484 LPRIKGLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGL 543
           +PRIK +++V++FL++S PDV IA+ HGK+ SK ++  MEKFA GE+KIL+ T+I+ESG+
Sbjct: 393 VPRIKAIDDVLQFLKDSLPDVPIAVAHGKKMSKNIQFAMEKFARGEVKILVCTHIIESGI 452

Query: 544 DIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEE 603
           D+ NANTIIVQ  + FGLAQLYQLRGRVGR+ +E +AYL Y DK+LLS  A +RL A+EE
Sbjct: 453 DVANANTIIVQFAELFGLAQLYQLRGRVGRSGREGFAYLFYTDKSLLSRVATDRLGAIEE 512

Query: 604 CRELGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVP 663
             ELGQGF +AE+DMGIRGFG++FG+QQ+GDV NVGIDLFF+MLF+SLSKV++  +V VP
Sbjct: 513 HSELGQGFHVAEKDMGIRGFGSLFGDQQSGDVANVGIDLFFDMLFDSLSKVDQFCLVPVP 572

Query: 664 YHSVQVDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRP 723
           Y  VQ+DINI+PHL SEYI++LENP+E++NEA + AEKD W+L+QFTE+LRR+YGKEPR 
Sbjct: 573 YKDVQLDINISPHLSSEYISYLENPVELLNEAAKAAEKDLWTLIQFTEDLRRRYGKEPRD 632

Query: 724 MEVLLKKLYLRRMAADIGINRIYSSGKTVFMKANITKKVFKMMTDSMTSDIYRNSLVLEG 783
           ME+LLKKLY+RRMAAD+GI+R+Y SGKT+FMK N+ KKVF++MT++MTS+ +RNSL   G
Sbjct: 633 MELLLKKLYVRRMAADLGISRVYPSGKTIFMKTNMNKKVFRLMTEAMTSETHRNSLSFVG 692

Query: 784 DQIKAXXXXXXXXXXXXNWIFQCVAELHASLPALIKY 820
            +IKA            NW+F C+A+ +A +PAL+KY
Sbjct: 693 KEIKAELLVSLPDTLLLNWLFHCLADCYAVIPALVKY 729


>Q2R377_ORYSJ (tr|Q2R377) CarD-like transcriptional regulator family protein,
           expressed OS=Oryza sativa subsp. japonica
           GN=LOC_Os11g32880 PE=2 SV=2
          Length = 832

 Score =  982 bits (2538), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 464/776 (59%), Positives = 609/776 (78%), Gaps = 34/776 (4%)

Query: 73  DPISLLNERIRRDHGKREVSRTV---MDKKEAEKYIQLVKEQQQRGLQKLKGER------ 123
           D I+ LN R+R    +R+ S +    +D  +AE Y+++++EQQ+ GL++L+G+       
Sbjct: 63  DDIAQLNHRLRALVRRRDASSSAALSVDPAQAEAYLRMIREQQRMGLRQLRGDGDGAASQ 122

Query: 124 -------------------VGKDGNFSYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPK 164
                              V    +  ++VDP  L  G+YVVHKKVG+G F+ I      
Sbjct: 123 EGESDGDGDEGGGGRRKGVVAAGSSLGHRVDPRELEAGEYVVHKKVGVGKFVCI------ 176

Query: 165 NSAEPTEYVFIEYADGMAKLPVKQSSKMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKG 224
           ++ +  +YVFI+YAD MAKL V Q+++MLYRY LP+E ++P+ LSKLND S WEKR+ KG
Sbjct: 177 SAEDGLDYVFIQYADAMAKLAVDQAARMLYRYNLPHEKQRPRNLSKLNDPSTWEKRRLKG 236

Query: 225 KVAIQKMVVDLMELYLHRLKQRRPPYPKSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTE 284
           K+A+QKMVV+LMELYL R++Q+RPPYPK   M +FTA+FPYEPTPDQ QAFIDV+KDLTE
Sbjct: 237 KLAVQKMVVNLMELYLQRMRQKRPPYPKPVGMDQFTAEFPYEPTPDQNQAFIDVDKDLTE 296

Query: 285 RETPMDRLICGDVGFGKTEVALRAIRCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYP 344
           RETPMDRLICGDVGFGKTEVA+RAI  V+SA  QAMVLAPT++LAKQH+DV+SERF+ YP
Sbjct: 297 RETPMDRLICGDVGFGKTEVAMRAIFIVISAGFQAMVLAPTVILAKQHYDVMSERFSNYP 356

Query: 345 DIKVGLLSRFQTKAEKEEHLESIKSGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGV 404
           DIKV + S  QTK EK+E +  I++G+L IIVGTH++L  R+ Y+NLGLLVVDEEQ+FGV
Sbjct: 357 DIKVAMFSGAQTKEEKDELITKIRNGDLHIIVGTHAVLTERMAYNNLGLLVVDEEQKFGV 416

Query: 405 KQKEKIATFKTSVDVLTLSATPIPRTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKE 464
           +QKEKIA++K S+DVLTLSATPIPRTLYLALTGFRDASL++TPPPERV ++T++S FSKE
Sbjct: 417 QQKEKIASYKASIDVLTLSATPIPRTLYLALTGFRDASLMSTPPPERVAVRTYVSGFSKE 476

Query: 465 KVISAIKYELDRGGQVFYVLPRIKGLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEK 524
           + +SAIK+EL RGGQVFYV+PRIK +++V++FL++S PDV +A+ HGK+ SK ++  MEK
Sbjct: 477 RALSAIKFELARGGQVFYVVPRIKAIDDVLQFLKDSLPDVPMAVAHGKKVSKNIQLAMEK 536

Query: 525 FALGEIKILISTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLY 584
           FA GE+KIL+ T+I+ESG+DI NANT++VQ  + FGLAQLYQLRGRVGR+  E +AYL Y
Sbjct: 537 FACGEVKILVCTHIIESGIDIPNANTMVVQYAELFGLAQLYQLRGRVGRSGTEGFAYLFY 596

Query: 585 PDKNLLSDQALERLSALEECRELGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFF 644
            DK+LLS  A +RL A+EE  +LGQGF +AE+DMGIRGFG++FGEQQ+GDV NVGIDLFF
Sbjct: 597 TDKSLLSKIATDRLGAIEEHSDLGQGFHVAEKDMGIRGFGSLFGEQQSGDVANVGIDLFF 656

Query: 645 EMLFESLSKVEEHRVVAVPYHSVQVDININPHLPSEYINHLENPMEIINEAERVAEKDTW 704
           +MLF+SLSKV++  ++ VPY  VQ+DINI+  L SEYI++LENP+E++NEA + AEKD W
Sbjct: 657 DMLFDSLSKVDQFCLIPVPYKDVQLDINISSRLSSEYISYLENPVELLNEAAKAAEKDLW 716

Query: 705 SLMQFTENLRRQYGKEPRPMEVLLKKLYLRRMAADIGINRIYSSGKTVFMKANITKKVFK 764
           +L+QFTE+LRRQYGKEPR ME+LLKKLY+RRMAAD+GI+RIYSSGK + MK N+ KKVF+
Sbjct: 717 TLIQFTEDLRRQYGKEPRDMELLLKKLYVRRMAADLGISRIYSSGKMIIMKTNMNKKVFR 776

Query: 765 MMTDSMTSDIYRNSLVLEGDQIKAXXXXXXXXXXXXNWIFQCVAELHASLPALIKY 820
           +M ++M+ + +RNSL   G +IK             NW+F C+A+ +A +PAL+KY
Sbjct: 777 LMREAMSLETHRNSLSFTGKEIKGELLVNLPDTLLLNWLFHCLADCYAVIPALVKY 832


>C5Y3R0_SORBI (tr|C5Y3R0) Putative uncharacterized protein Sb05g020300 OS=Sorghum
           bicolor GN=Sb05g020300 PE=4 SV=1
          Length = 834

 Score =  981 bits (2537), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 464/739 (62%), Positives = 600/739 (81%), Gaps = 20/739 (2%)

Query: 96  MDKKEAEKYIQLVKEQQQRGLQKLK------------GER--VGKDGNFSYKVDPYTLRN 141
           +D  +AE Y++++++QQ+ GL++L+            G R  V    +  ++VDP  L  
Sbjct: 102 VDPSQAEAYLRMIRDQQRLGLRQLRGEEGESDGDEERGARKGVAAGSSLGHRVDPRELEP 161

Query: 142 GDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSSKMLYRYCLPNE 201
           G+YVVHKKVG+G F  I      ++ +  +YVFI+YADGMAKL V Q+++MLYRY LP+E
Sbjct: 162 GEYVVHKKVGVGKFACI------SAEDGVDYVFIQYADGMAKLAVDQAARMLYRYNLPHE 215

Query: 202 NKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPYPKSPAMAEFTA 261
             +P+ LSKLND S WEKR+ KGK+A+QKMVV+LMELYL R++  RPPYPK  +M +F A
Sbjct: 216 KTRPRNLSKLNDPSTWEKRRLKGKLAVQKMVVNLMELYLQRMRLGRPPYPKPASMDDFAA 275

Query: 262 QFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAIRCVVSAKKQAMV 321
           +FPYEPTPDQ QAFIDVEKDLTERETPMDRLICGDVGFGKTEVA+RAI  VVSA  QAMV
Sbjct: 276 EFPYEPTPDQCQAFIDVEKDLTERETPMDRLICGDVGFGKTEVAMRAIFIVVSAGFQAMV 335

Query: 322 LAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKSGELDIIVGTHSL 381
           LAPTI+LAKQH+DV++ERFA YP+IK+ + S  Q+K EK+E +  IK+G+L IIVGTH+L
Sbjct: 336 LAPTIILAKQHYDVMTERFANYPEIKIAIFSGAQSKEEKDELITKIKNGDLHIIVGTHAL 395

Query: 382 LGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPRTLYLALTGFRDA 441
           L  R+VYSNLGLLVVDEEQ+FGV+QKEKIA++K+S+DVLTLSATPIPRTLYLALTGFRDA
Sbjct: 396 LTERMVYSNLGLLVVDEEQKFGVQQKEKIASYKSSIDVLTLSATPIPRTLYLALTGFRDA 455

Query: 442 SLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEVMEFLEESF 501
           SL++TPPPERV +KT++S+FSKE+ +SAIK+EL RGGQVFYV+PRIK +++V++FL++S 
Sbjct: 456 SLMSTPPPERVAVKTYVSAFSKERALSAIKFELQRGGQVFYVVPRIKAIDDVLQFLKDSL 515

Query: 502 PDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNANTIIVQDVQQFGL 561
           PDV IA+ HGK+ SK ++  ME FA GE+KIL+ T+I+ESG+DI NANT+IVQ  + +GL
Sbjct: 516 PDVPIAVAHGKKMSKSIQLAMEDFASGEVKILVCTHIIESGIDIANANTMIVQFAELYGL 575

Query: 562 AQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQGFQLAERDMGIR 621
           AQLYQLRGRVGR+ +E +AYL Y DK+LLS  A +RL A+EE  ELGQGF +AE+DMGIR
Sbjct: 576 AQLYQLRGRVGRSGREGFAYLFYTDKSLLSRVATDRLGAIEEHSELGQGFHVAEKDMGIR 635

Query: 622 GFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQVDININPHLPSEY 681
           GFG++FG+QQ+GDV NVGIDLFF+MLF+SLSKV++  +V V Y  VQ+DINI+P LPSEY
Sbjct: 636 GFGSLFGDQQSGDVANVGIDLFFDMLFDSLSKVDQFCLVPVLYKDVQLDINISPRLPSEY 695

Query: 682 INHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLLKKLYLRRMAADIG 741
           I++LENP+E++NEA + AEKD W+L+QFTE+LRR+YGKEPR ME+LLKKLY+RRMAAD+G
Sbjct: 696 ISYLENPVELLNEAAKAAEKDLWALIQFTEDLRRRYGKEPRDMELLLKKLYVRRMAADLG 755

Query: 742 INRIYSSGKTVFMKANITKKVFKMMTDSMTSDIYRNSLVLEGDQIKAXXXXXXXXXXXXN 801
           I+RIY SGKT+FMK N+ KKVF++MT++MTS+ +RNSL   G +IKA            N
Sbjct: 756 ISRIYPSGKTIFMKTNMNKKVFRLMTEAMTSETHRNSLSFAGKEIKAELLVSLPDTLLLN 815

Query: 802 WIFQCVAELHASLPALIKY 820
           W+F C+++ +  +PAL+KY
Sbjct: 816 WLFHCLSDCYTVIPALVKY 834


>A3CBY2_ORYSJ (tr|A3CBY2) Putative uncharacterized protein OS=Oryza sativa subsp.
           japonica GN=OsJ_34121 PE=2 SV=1
          Length = 832

 Score =  981 bits (2536), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 464/776 (59%), Positives = 609/776 (78%), Gaps = 34/776 (4%)

Query: 73  DPISLLNERIRRDHGKREVSRTV---MDKKEAEKYIQLVKEQQQRGLQKLKGER------ 123
           D I+ LN R+R    +R+ S +    +D  +AE Y+++++EQQ+ GL++L+G+       
Sbjct: 63  DDIAQLNHRLRALVRRRDASSSAALSVDPAQAEAYLRMIREQQRMGLRQLRGDGDGAASQ 122

Query: 124 -------------------VGKDGNFSYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPK 164
                              V    +  ++VDP  L  G+YVVHKKVG+G F+ I      
Sbjct: 123 EGESDGDGDEGGGGRRKGVVAAGSSLGHRVDPRELEAGEYVVHKKVGVGKFVCI------ 176

Query: 165 NSAEPTEYVFIEYADGMAKLPVKQSSKMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKG 224
           ++ +  +YVFI+YAD MAKL V Q+++MLYRY LP+E ++P+ LSKLND S WEKR+ KG
Sbjct: 177 SAEDGLDYVFIQYADAMAKLAVDQAARMLYRYNLPHEKQRPRNLSKLNDPSTWEKRRLKG 236

Query: 225 KVAIQKMVVDLMELYLHRLKQRRPPYPKSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTE 284
           K+A+QKMVV+LMELYL R++Q+RPPYPK   M +FTA+FPYEPTPDQ QAFIDV+KDLTE
Sbjct: 237 KLAVQKMVVNLMELYLQRMRQKRPPYPKPVGMDQFTAEFPYEPTPDQNQAFIDVDKDLTE 296

Query: 285 RETPMDRLICGDVGFGKTEVALRAIRCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYP 344
           RETPMDRLICGDVGFGKTEVA+RAI  V+SA  QAMVLAPT++LAKQH+DV+SERF+ YP
Sbjct: 297 RETPMDRLICGDVGFGKTEVAMRAIFIVISAGFQAMVLAPTVILAKQHYDVMSERFSNYP 356

Query: 345 DIKVGLLSRFQTKAEKEEHLESIKSGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGV 404
           DIKV + S  QTK EK+E +  I++G+L IIVGTH++L  R+ Y+NLGLLVVDEEQ+FGV
Sbjct: 357 DIKVAMFSGAQTKEEKDELITKIRNGDLHIIVGTHAVLTERMAYNNLGLLVVDEEQKFGV 416

Query: 405 KQKEKIATFKTSVDVLTLSATPIPRTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKE 464
           +QKEKIA++K S+DVLTLSATPIPRTLYLALTGFRDASL++TPPPERV ++T++S FSKE
Sbjct: 417 QQKEKIASYKASIDVLTLSATPIPRTLYLALTGFRDASLMSTPPPERVAVRTYVSGFSKE 476

Query: 465 KVISAIKYELDRGGQVFYVLPRIKGLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEK 524
           + +SAIK+EL RGGQVFYV+PRIK +++V++FL++S PDV +A+ HGK+ SK ++  MEK
Sbjct: 477 RALSAIKFELARGGQVFYVVPRIKAIDDVLQFLKDSLPDVPMAVAHGKKVSKNIQLAMEK 536

Query: 525 FALGEIKILISTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLY 584
           FA GE+KIL+ T+I+ESG+DI NANT++VQ  + FGLAQLYQLRGRVGR+  E +AYL Y
Sbjct: 537 FACGEVKILVCTHIIESGIDIPNANTMVVQYAELFGLAQLYQLRGRVGRSGTEGFAYLFY 596

Query: 585 PDKNLLSDQALERLSALEECRELGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFF 644
            DK+LLS  A +RL A+EE  +LGQGF +AE+DMGIRGFG++FGEQQ+GDV NVGIDLFF
Sbjct: 597 TDKSLLSKIATDRLGAIEEHSDLGQGFHVAEKDMGIRGFGSLFGEQQSGDVANVGIDLFF 656

Query: 645 EMLFESLSKVEEHRVVAVPYHSVQVDININPHLPSEYINHLENPMEIINEAERVAEKDTW 704
           +MLF+SLSKV++  ++ VPY  VQ+DINI+  L SEYI++LENP+E++NEA + AEKD W
Sbjct: 657 DMLFDSLSKVDQFCLIPVPYKDVQLDINISSRLSSEYISYLENPVELLNEAAKAAEKDLW 716

Query: 705 SLMQFTENLRRQYGKEPRPMEVLLKKLYLRRMAADIGINRIYSSGKTVFMKANITKKVFK 764
           +L+QFTE+LRRQYGKEPR ME+LLKKLY+RRMAAD+GI+RIYSSGK + MK N+ KKVF+
Sbjct: 717 TLIQFTEDLRRQYGKEPRDMELLLKKLYVRRMAADLGISRIYSSGKMIIMKTNMNKKVFR 776

Query: 765 MMTDSMTSDIYRNSLVLEGDQIKAXXXXXXXXXXXXNWIFQCVAELHASLPALIKY 820
           +M ++M+ + +RNSL   G +IK             NW+F C+A+ +A +PAL+KY
Sbjct: 777 LMREAMSLETHRNSLSFTGKEIKGELLVNLPDTLLLNWLFHCLADCYAVIPALVKY 832


>I1ILE1_BRADI (tr|I1ILE1) Uncharacterized protein OS=Brachypodium distachyon
           GN=BRADI4G17160 PE=4 SV=1
          Length = 826

 Score =  973 bits (2514), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/751 (61%), Positives = 593/751 (78%), Gaps = 32/751 (4%)

Query: 96  MDKKEAEKYIQLVKEQQQRGLQKLKGERVGK--------------------------DGN 129
           MD  +AE Y+ +++EQQ+ GL++L+ +  G+                            +
Sbjct: 82  MDPVQAEAYLHMIREQQRLGLRQLRRDPAGQKEERDSGVDDGDEEEEGGGRRKGMAAGSS 141

Query: 130 FSYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQS 189
             ++VDP  L  G+YVVHKKVG+G F+ I      +  +  +YVFI+YAD MAKL V Q+
Sbjct: 142 LGHRVDPRELEPGEYVVHKKVGVGKFVCI------SGEDGEDYVFIQYADAMAKLAVDQA 195

Query: 190 SKMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPP 249
           ++MLYRY LP+E K+P++LSKLND S WEKR+ KGK+A+QKMVV+LMELYL R++QRR P
Sbjct: 196 ARMLYRYNLPHEKKRPRSLSKLNDPSTWEKRRLKGKLAVQKMVVNLMELYLQRMRQRRSP 255

Query: 250 YPKSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
           Y +  A+ +F A+FPYEPTPDQ QAFIDVEKDLTERETPMDRLICGDVGFGKTEVA+RAI
Sbjct: 256 YTRPEAIDQFAAEFPYEPTPDQNQAFIDVEKDLTERETPMDRLICGDVGFGKTEVAMRAI 315

Query: 310 RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKS 369
             VVSA  QAMVLAPT++LA QH+DV+S+RF+ YPDIK+ + S  Q+K EK+E +  IKS
Sbjct: 316 FIVVSAGYQAMVLAPTVILANQHYDVMSDRFSSYPDIKIAIFSGAQSKEEKDELITQIKS 375

Query: 370 GELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPR 429
           G L IIVGTH+LL  R+ Y+NLGLLVVDEEQ+FGV+QKEKIA++K+S+DVLTLSATPIPR
Sbjct: 376 GHLQIIVGTHALLTERMAYNNLGLLVVDEEQKFGVQQKEKIASYKSSIDVLTLSATPIPR 435

Query: 430 TLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKG 489
           TLYLALTGFRDASL++TPPPERV +KT++S+FS+E+ +SAIK EL RGGQVFYV+PRIK 
Sbjct: 436 TLYLALTGFRDASLMSTPPPERVAVKTYVSAFSRERALSAIKLELKRGGQVFYVVPRIKA 495

Query: 490 LEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNAN 549
           +++V++FL++S PDV +A+ HGK+ SK ++  MEKF+ GEIKIL+ T+I+ESG+DI NAN
Sbjct: 496 IDDVLQFLKDSLPDVPMAVAHGKKVSKNIQLAMEKFSCGEIKILVCTHIIESGIDIPNAN 555

Query: 550 TIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQ 609
           T+IVQ  + FGLAQLYQLRGRVGR+ +E + YL Y DK+LLS  A++RL A+EE  +LGQ
Sbjct: 556 TMIVQYAELFGLAQLYQLRGRVGRSGREGFTYLFYTDKSLLSRIAMDRLGAIEEHSDLGQ 615

Query: 610 GFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQV 669
           GF +AE+DMGIRGFG++FGEQQ+GDV NVGIDLFF+MLF+SLSKV++  +  VPY  VQ+
Sbjct: 616 GFHVAEKDMGIRGFGSMFGEQQSGDVANVGIDLFFDMLFDSLSKVDQFCINPVPYKDVQL 675

Query: 670 DININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLLK 729
           DINI+ HL SEYI++LENP+E++NEA + AEKD W+L QFTE+LRRQYGKEPR ME+LLK
Sbjct: 676 DINISAHLSSEYISYLENPVELLNEAAKAAEKDIWTLTQFTEDLRRQYGKEPRDMELLLK 735

Query: 730 KLYLRRMAADIGINRIYSSGKTVFMKANITKKVFKMMTDSMTSDIYRNSLVLEGDQIKAX 789
           KLY+RRMAAD+GI RIY SGKT+ MK N+ KKVF++M ++M S+ +RNSL L G +IKA 
Sbjct: 736 KLYVRRMAADLGICRIYPSGKTIIMKTNMNKKVFRLMVEAMASETHRNSLTLTGKEIKAE 795

Query: 790 XXXXXXXXXXXNWIFQCVAELHASLPALIKY 820
                      NW+F C+A+ +A +PAL+KY
Sbjct: 796 LLVTLPDTLLLNWLFHCLADCYAGMPALVKY 826


>F2DG37_HORVD (tr|F2DG37) Predicted protein OS=Hordeum vulgare var. distichum
           PE=2 SV=1
          Length = 826

 Score =  971 bits (2510), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/776 (59%), Positives = 600/776 (77%), Gaps = 34/776 (4%)

Query: 73  DPISLLNERIR---RDHGKREVSRTVMDKKEAEKYIQLVKEQQQRGLQKLKGER------ 123
           D IS LN R+R   R  G    + + MD  +AE Y+ +++EQQ+ GL++L+ +       
Sbjct: 57  DDISQLNNRLRALVRRRGVSSAASSPMDPAQAEAYLHMIREQQRLGLRQLRRDAAEPEYE 116

Query: 124 --VGKD-----------------GNFSYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPK 164
             VG +                  +  ++VDP  L  G+YVVHKKVG+G F+ I      
Sbjct: 117 RDVGSNGEDEEEGGGRRKGMAAGSSLGHRVDPRELEPGEYVVHKKVGVGKFVCI------ 170

Query: 165 NSAEPTEYVFIEYADGMAKLPVKQSSKMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKG 224
           +  +  +YVFI+YAD MAKL V Q+++MLYRY LP+E K+P+ LSKLND S WEKR+ KG
Sbjct: 171 SGEDGEDYVFIQYADAMAKLAVDQAARMLYRYNLPHEKKRPRNLSKLNDPSAWEKRRLKG 230

Query: 225 KVAIQKMVVDLMELYLHRLKQRRPPYPKSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTE 284
           K+A+QKMVV+LMELYL R++QRRPPY K  AM +F ++FPYEPTPDQ QAFID+E DLTE
Sbjct: 231 KLAVQKMVVNLMELYLQRMRQRRPPYRKPEAMDQFASEFPYEPTPDQNQAFIDIENDLTE 290

Query: 285 RETPMDRLICGDVGFGKTEVALRAIRCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYP 344
           RETPMDRLICGDVGFGKTEVA+RAI  VVS   QAMVLAPT++LA QHFDV+SERF+ YP
Sbjct: 291 RETPMDRLICGDVGFGKTEVAMRAIFIVVSTGYQAMVLAPTVILANQHFDVMSERFSNYP 350

Query: 345 DIKVGLLSRFQTKAEKEEHLESIKSGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGV 404
           DIKV + S  Q+K EK+E +  I +G L IIVGTH+LL  R+ Y+NLGLLVVDEEQ+FGV
Sbjct: 351 DIKVAIFSGAQSKDEKDELITKITNGHLQIIVGTHALLTERMAYNNLGLLVVDEEQKFGV 410

Query: 405 KQKEKIATFKTSVDVLTLSATPIPRTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKE 464
           +QKEKIA+ K S+DVLTLSATPIPRTLYLALTGFRDASL++TPPPERV +KT++S+FS+E
Sbjct: 411 QQKEKIASLKASIDVLTLSATPIPRTLYLALTGFRDASLMSTPPPERVAVKTYVSAFSRE 470

Query: 465 KVISAIKYELDRGGQVFYVLPRIKGLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEK 524
             +SAIK EL RGGQVFYV+PRIK +++V++FL++S PDV +AI HGK+ SK ++  MEK
Sbjct: 471 SALSAIKLELKRGGQVFYVVPRIKAIDDVLQFLKDSLPDVPMAIAHGKKVSKNIQLAMEK 530

Query: 525 FALGEIKILISTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLY 584
           F+ GEIKIL+ T+I+ESG+DI NANT+IVQ  + FGLAQLYQLRGRVGR+ +E + +L Y
Sbjct: 531 FSCGEIKILVCTHIIESGIDIPNANTMIVQYAELFGLAQLYQLRGRVGRSGREGFTHLFY 590

Query: 585 PDKNLLSDQALERLSALEECRELGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFF 644
            DK+LLS  A++RL A+EE  +LGQGF +AE+DMGIRGFG++FGEQQ+GDV NVG+DLFF
Sbjct: 591 TDKSLLSRIAMDRLGAIEEHSDLGQGFHVAEKDMGIRGFGSMFGEQQSGDVANVGVDLFF 650

Query: 645 EMLFESLSKVEEHRVVAVPYHSVQVDININPHLPSEYINHLENPMEIINEAERVAEKDTW 704
           +MLF+SLSKV++ R+  +PY  VQ+DINI+PHL SEYI++LENP+E++NEA + AE+D W
Sbjct: 651 DMLFDSLSKVDQFRLKPIPYKDVQLDINISPHLSSEYISYLENPVELLNEAAKAAEQDIW 710

Query: 705 SLMQFTENLRRQYGKEPRPMEVLLKKLYLRRMAADIGINRIYSSGKTVFMKANITKKVFK 764
           +LMQFTE LRRQYGKEPR ME+LLKKLY+RRMAAD+GI+RIY SGK + MK N+ +KV++
Sbjct: 711 NLMQFTEGLRRQYGKEPRDMELLLKKLYVRRMAADLGISRIYPSGKMIIMKTNMNRKVYR 770

Query: 765 MMTDSMTSDIYRNSLVLEGDQIKAXXXXXXXXXXXXNWIFQCVAELHASLPALIKY 820
           +M ++M  + +RNSL   G +IKA            NW+F C+A+ +A +PAL++Y
Sbjct: 771 LMEETMACETHRNSLSFTGKEIKAELLVNLPDTLLLNWLFHCLADCYAIMPALVRY 826


>Q2HRX1_MEDTR (tr|Q2HRX1) Helicase, C-terminal; Haem peroxidase,
           plant/fungal/bacterial (Fragment) OS=Medicago truncatula
           GN=MtrDRAFT_AC157890g1v2 PE=4 SV=1
          Length = 494

 Score =  939 bits (2427), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/490 (92%), Positives = 475/490 (96%)

Query: 165 NSAEPTEYVFIEYADGMAKLPVKQSSKMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKG 224
           NS EPTEYVFIEYADGMAKLPVKQ+SKMLYRY LPNENKKP+ALSKLNDTS WEKRKTKG
Sbjct: 1   NSIEPTEYVFIEYADGMAKLPVKQASKMLYRYSLPNENKKPRALSKLNDTSAWEKRKTKG 60

Query: 225 KVAIQKMVVDLMELYLHRLKQRRPPYPKSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTE 284
           KVAIQKMVVDLMELYLHRLKQRRPPYP SP +AEF A+FPYEPTPDQKQAFIDVEKDLTE
Sbjct: 61  KVAIQKMVVDLMELYLHRLKQRRPPYPMSPVVAEFAAKFPYEPTPDQKQAFIDVEKDLTE 120

Query: 285 RETPMDRLICGDVGFGKTEVALRAIRCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYP 344
           RETPMDRLICGDVGFGKTEVA+RAI CVV+AKKQAMVLAPTIVLAKQHFDVISERF+VYP
Sbjct: 121 RETPMDRLICGDVGFGKTEVAMRAIHCVVAAKKQAMVLAPTIVLAKQHFDVISERFSVYP 180

Query: 345 DIKVGLLSRFQTKAEKEEHLESIKSGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGV 404
           DIKVGLLSRFQT++EKE +LE IK+G+LDIIVGTHSLLGNRVVY+NLGLLVVDEEQRFGV
Sbjct: 181 DIKVGLLSRFQTRSEKEAYLEMIKNGDLDIIVGTHSLLGNRVVYNNLGLLVVDEEQRFGV 240

Query: 405 KQKEKIATFKTSVDVLTLSATPIPRTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKE 464
           KQKE+IA+FKTSVDVLTLSATPIPRTLYLALTGFRDASLI+TPPPERVPIKT LSSFSK+
Sbjct: 241 KQKERIASFKTSVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERVPIKTQLSSFSKD 300

Query: 465 KVISAIKYELDRGGQVFYVLPRIKGLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEK 524
           KVISAIKYELDR GQVFYVLPRIKGLEE MEFLEE+FPDVEIA+ HGKQ+SKQLEDTMEK
Sbjct: 301 KVISAIKYELDRSGQVFYVLPRIKGLEEAMEFLEEAFPDVEIAVAHGKQFSKQLEDTMEK 360

Query: 525 FALGEIKILISTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLY 584
           F LGEIKILISTNIVESGLDIQNANTII+QDVQQFGLAQLYQLRGRVGRADKEAYAYL Y
Sbjct: 361 FTLGEIKILISTNIVESGLDIQNANTIIIQDVQQFGLAQLYQLRGRVGRADKEAYAYLFY 420

Query: 585 PDKNLLSDQALERLSALEECRELGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFF 644
           PDK+LL+DQALERL+ALEECRELGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFF
Sbjct: 421 PDKSLLTDQALERLAALEECRELGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFF 480

Query: 645 EMLFESLSKV 654
           EMLFESLSKV
Sbjct: 481 EMLFESLSKV 490


>Q2R378_ORYSJ (tr|Q2R378) CarD-like transcriptional regulator family protein,
           expressed OS=Oryza sativa subsp. japonica
           GN=LOC_Os11g32880 PE=2 SV=2
          Length = 803

 Score =  932 bits (2409), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/776 (57%), Positives = 588/776 (75%), Gaps = 63/776 (8%)

Query: 73  DPISLLNERIRRDHGKREVSRTV---MDKKEAEKYIQLVKEQQQRGLQKLKGER------ 123
           D I+ LN R+R    +R+ S +    +D  +AE Y+++++EQQ+ GL++L+G+       
Sbjct: 63  DDIAQLNHRLRALVRRRDASSSAALSVDPAQAEAYLRMIREQQRMGLRQLRGDGDGAASQ 122

Query: 124 -------------------VGKDGNFSYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPK 164
                              V    +  ++VDP  L  G+YVVHKKVG+G F+ I      
Sbjct: 123 EGESDGDGDEGGGGRRKGVVAAGSSLGHRVDPRELEAGEYVVHKKVGVGKFVCI------ 176

Query: 165 NSAEPTEYVFIEYADGMAKLPVKQSSKMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKG 224
           ++ +  +YVFI+YAD MAKL V Q+++MLYRY LP+E ++P+ LSKLND S WEKR+ KG
Sbjct: 177 SAEDGLDYVFIQYADAMAKLAVDQAARMLYRYNLPHEKQRPRNLSKLNDPSTWEKRRLKG 236

Query: 225 KVAIQKMVVDLMELYLHRLKQRRPPYPKSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTE 284
           K+A+QKMVV+LMELYL R++Q+RPPYPK   M +FTA+FPYEPTPDQ QAFIDV+KDLTE
Sbjct: 237 KLAVQKMVVNLMELYLQRMRQKRPPYPKPVGMDQFTAEFPYEPTPDQNQAFIDVDKDLTE 296

Query: 285 RETPMDRLICGDVGFGKTEVALRAIRCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYP 344
           RETPMDRLICGDVGFGKTEVA+RAI  V+SA  QAMVLAPT++LAKQH+DV+SERF+ YP
Sbjct: 297 RETPMDRLICGDVGFGKTEVAMRAIFIVISAGFQAMVLAPTVILAKQHYDVMSERFSNYP 356

Query: 345 DIKVGLLSRFQTKAEKEEHLESIKSGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGV 404
           DIKV + S  QTK EK+E +  I++G+L IIVGTH++L  R+ Y+NLGLLVVDEEQ+FGV
Sbjct: 357 DIKVAMFSGAQTKEEKDELITKIRNGDLHIIVGTHAVLTERMAYNNLGLLVVDEEQKFGV 416

Query: 405 KQKEKIATFKTSVDVLTLSATPIPRTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKE 464
           +QKEKIA++K S+DVLTLSATPIPRTLYLALTGFRDASL++TPPPERV ++T++S FSKE
Sbjct: 417 QQKEKIASYKASIDVLTLSATPIPRTLYLALTGFRDASLMSTPPPERVAVRTYVSGFSKE 476

Query: 465 KVISAIKYELDRGGQVFYVLPRIKGLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEK 524
           + +SAIK+EL RGGQVFYV+PRIK +++V++FL++S PDV +A+ HGK+ SK ++  MEK
Sbjct: 477 RALSAIKFELARGGQVFYVVPRIKAIDDVLQFLKDSLPDVPMAVAHGKKVSKNIQLAMEK 536

Query: 525 FALGEIKILISTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLY 584
           FA GE+KIL+ T+I+ESG+DI NANT++VQ  + FGLAQLYQ                  
Sbjct: 537 FACGEVKILVCTHIIESGIDIPNANTMVVQYAELFGLAQLYQ------------------ 578

Query: 585 PDKNLLSDQALERLSALEECRELGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFF 644
                      +RL A+EE  +LGQGF +AE+DMGIRGFG++FGEQQ+GDV NVGIDLFF
Sbjct: 579 -----------DRLGAIEEHSDLGQGFHVAEKDMGIRGFGSLFGEQQSGDVANVGIDLFF 627

Query: 645 EMLFESLSKVEEHRVVAVPYHSVQVDININPHLPSEYINHLENPMEIINEAERVAEKDTW 704
           +MLF+SLSKV++  ++ VPY  VQ+DINI+  L SEYI++LENP+E++NEA + AEKD W
Sbjct: 628 DMLFDSLSKVDQFCLIPVPYKDVQLDINISSRLSSEYISYLENPVELLNEAAKAAEKDLW 687

Query: 705 SLMQFTENLRRQYGKEPRPMEVLLKKLYLRRMAADIGINRIYSSGKTVFMKANITKKVFK 764
           +L+QFTE+LRRQYGKEPR ME+LLKKLY+RRMAAD+GI+RIYSSGK + MK N+ KKVF+
Sbjct: 688 TLIQFTEDLRRQYGKEPRDMELLLKKLYVRRMAADLGISRIYSSGKMIIMKTNMNKKVFR 747

Query: 765 MMTDSMTSDIYRNSLVLEGDQIKAXXXXXXXXXXXXNWIFQCVAELHASLPALIKY 820
           +M ++M+ + +RNSL   G +IK             NW+F C+A+ +A +PAL+KY
Sbjct: 748 LMREAMSLETHRNSLSFTGKEIKGELLVNLPDTLLLNWLFHCLADCYAVIPALVKY 803


>J3N8T5_ORYBR (tr|J3N8T5) Uncharacterized protein OS=Oryza brachyantha
           GN=OB11G22210 PE=4 SV=1
          Length = 640

 Score =  919 bits (2374), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/640 (66%), Positives = 539/640 (84%)

Query: 181 MAKLPVKQSSKMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYL 240
           MAKL V Q+++MLYRY LP+E ++P+ LSKLND S WEKR+ KGK+A+QKMVV+LMELYL
Sbjct: 1   MAKLAVDQAARMLYRYNLPHEKQRPRNLSKLNDPSTWEKRRLKGKLAVQKMVVNLMELYL 60

Query: 241 HRLKQRRPPYPKSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFG 300
            R++Q+RPPYPK   M +FTA+FPYEPTPDQ QAFIDVEKDLTERETPMDRLICGDVGFG
Sbjct: 61  QRMRQKRPPYPKPVEMDQFTAEFPYEPTPDQNQAFIDVEKDLTERETPMDRLICGDVGFG 120

Query: 301 KTEVALRAIRCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEK 360
           KTEVA+RAI  V+SA  QAMVLAPT++LAKQH+DV+SERF+ YPDIKV + S  QTK EK
Sbjct: 121 KTEVAMRAIFIVISAGFQAMVLAPTVILAKQHYDVMSERFSNYPDIKVAMFSGAQTKEEK 180

Query: 361 EEHLESIKSGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVL 420
           +E + +I++G+L IIVGTH++L  R+ Y+NLGLLVVDEEQ+FGV+QKEKIA++K S+DVL
Sbjct: 181 DELITNIRNGDLQIIVGTHAVLTERMAYNNLGLLVVDEEQKFGVQQKEKIASYKASIDVL 240

Query: 421 TLSATPIPRTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQV 480
           TLSATPIPRTLYLALTGFRDASL++TPPPERV ++T++S FSKE+ +SAIK+EL RGGQV
Sbjct: 241 TLSATPIPRTLYLALTGFRDASLMSTPPPERVAVRTYVSGFSKERALSAIKFELARGGQV 300

Query: 481 FYVLPRIKGLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVE 540
           FYV+PRIK +++V++FL++  PDV +A+ HGK+ SK ++  MEKFA GE+KIL+ T+I+E
Sbjct: 301 FYVVPRIKAIDDVLQFLKDFLPDVPMAVAHGKKVSKNIQLAMEKFACGEVKILVCTHIIE 360

Query: 541 SGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSA 600
           SG+DI NANTIIVQ  + FGLAQLYQLRGRVGR+  E +AYL Y DK+LLS  A +RL A
Sbjct: 361 SGIDIPNANTIIVQYAELFGLAQLYQLRGRVGRSGTEGFAYLFYTDKSLLSKIATDRLGA 420

Query: 601 LEECRELGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVV 660
           +EE  +LGQGF +AE+DMGIRGFG++FGEQQ+GDV NVGIDLFF+MLF+SLSKV++  +V
Sbjct: 421 IEEHSDLGQGFHVAEKDMGIRGFGSLFGEQQSGDVANVGIDLFFDMLFDSLSKVDQFCLV 480

Query: 661 AVPYHSVQVDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKE 720
            VPY  VQ+DINI+  L SEYI++LENP+E++NEA + AEKD W+LMQFTE+LRRQYGKE
Sbjct: 481 PVPYKDVQLDINISSRLSSEYISYLENPVELLNEATKAAEKDLWTLMQFTEDLRRQYGKE 540

Query: 721 PRPMEVLLKKLYLRRMAADIGINRIYSSGKTVFMKANITKKVFKMMTDSMTSDIYRNSLV 780
           PR ME+LLKKLY+RRMAAD+GI+RIYSSGKT+ MK N+ KKVF++M ++M+ + +RNSL 
Sbjct: 541 PRDMELLLKKLYVRRMAADLGISRIYSSGKTIIMKTNMNKKVFRLMREAMSLETHRNSLS 600

Query: 781 LEGDQIKAXXXXXXXXXXXXNWIFQCVAELHASLPALIKY 820
             G +IK             NW+F C+A+ +A +PAL+KY
Sbjct: 601 FTGKEIKGELLVNLPDSLLLNWLFHCLADCYAVIPALVKY 640


>A2ZEZ1_ORYSI (tr|A2ZEZ1) Putative uncharacterized protein OS=Oryza sativa subsp.
           indica GN=OsI_36354 PE=2 SV=1
          Length = 640

 Score =  913 bits (2360), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/640 (65%), Positives = 538/640 (84%)

Query: 181 MAKLPVKQSSKMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYL 240
           MAKL V Q+++MLYRY LP+E ++P+ LSKLND S WEKR+ KGK+A+QKMVV+LMELYL
Sbjct: 1   MAKLAVDQAARMLYRYNLPHEKQRPRNLSKLNDPSTWEKRRLKGKLAVQKMVVNLMELYL 60

Query: 241 HRLKQRRPPYPKSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFG 300
            R++Q+RPPYPK   M +FTA+FPYEPTPDQ QAFIDV+KDLTERETPMDRLICGDVGFG
Sbjct: 61  QRMRQKRPPYPKPVGMDQFTAEFPYEPTPDQNQAFIDVDKDLTERETPMDRLICGDVGFG 120

Query: 301 KTEVALRAIRCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEK 360
           KTEVA+RAI  V+SA  QAMVLAPT++LAKQH+DV+SERF+ YPDIKV + S  QTK EK
Sbjct: 121 KTEVAMRAIFIVISAGFQAMVLAPTVILAKQHYDVMSERFSNYPDIKVAMFSGAQTKEEK 180

Query: 361 EEHLESIKSGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVL 420
           +E +  I++G+L IIVGTH++L  R+ Y+NLGLLVVDEEQ+FGV+QKEKIA++K S+DVL
Sbjct: 181 DELITKIRNGDLHIIVGTHAVLTERMAYNNLGLLVVDEEQKFGVQQKEKIASYKASIDVL 240

Query: 421 TLSATPIPRTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQV 480
           TLSATPIPRTLYLALTGFRDASL++TPPPERV ++T++S FSKE+ +SAIK+EL RGGQV
Sbjct: 241 TLSATPIPRTLYLALTGFRDASLMSTPPPERVAVRTYVSGFSKERALSAIKFELARGGQV 300

Query: 481 FYVLPRIKGLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVE 540
           FYV+PRIK +++V++FL++S PDV +A+ HGK+ SK ++  MEKFA GE+KIL+ T+I+E
Sbjct: 301 FYVVPRIKAIDDVLQFLKDSLPDVPMAVAHGKKVSKNIQLAMEKFACGEVKILVCTHIIE 360

Query: 541 SGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSA 600
           SG+DI NANT++VQ  + FGLAQLYQLRGRVGR+  E +AYL Y DK+LLS  A +RL A
Sbjct: 361 SGIDIPNANTMVVQYAELFGLAQLYQLRGRVGRSGTEGFAYLFYTDKSLLSKIATDRLGA 420

Query: 601 LEECRELGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVV 660
           +EE  +LGQGF +AE+DMGIRGFG++FGEQQ+GDV NVGIDLFF+MLF+SLSKV++  ++
Sbjct: 421 IEEHSDLGQGFHVAEKDMGIRGFGSLFGEQQSGDVANVGIDLFFDMLFDSLSKVDQFCLI 480

Query: 661 AVPYHSVQVDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKE 720
            VPY  VQ+DINI+  L SEYI++LENP+E++NEA + AEKD W+L+QFTE+LRRQYGKE
Sbjct: 481 PVPYKDVQLDINISSRLSSEYISYLENPVELLNEAAKAAEKDLWTLIQFTEDLRRQYGKE 540

Query: 721 PRPMEVLLKKLYLRRMAADIGINRIYSSGKTVFMKANITKKVFKMMTDSMTSDIYRNSLV 780
           PR ME+LLKKLY+RRMAAD+GI+RIYSSGK + MK N+ KKVF++M ++M+ + +RNSL 
Sbjct: 541 PRDMELLLKKLYVRRMAADLGISRIYSSGKMIIMKTNMNKKVFRLMREAMSLETHRNSLS 600

Query: 781 LEGDQIKAXXXXXXXXXXXXNWIFQCVAELHASLPALIKY 820
             G +IK             NW+F C+A+ +A +PAL+KY
Sbjct: 601 FTGKEIKGELLVNLPDTLLLNWLFHCLADCYAVIPALVKY 640


>G7KY98_MEDTR (tr|G7KY98) Transcription-repair-coupling factor OS=Medicago
           truncatula GN=MTR_7g084560 PE=4 SV=1
          Length = 503

 Score =  907 bits (2343), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/477 (91%), Positives = 461/477 (96%)

Query: 181 MAKLPVKQSSKMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYL 240
           MAKLPVKQ+SKMLYRY LPNENKKP+ALSKLNDTS WEKRKTKGKVAIQKMVVDLMELYL
Sbjct: 1   MAKLPVKQASKMLYRYSLPNENKKPRALSKLNDTSAWEKRKTKGKVAIQKMVVDLMELYL 60

Query: 241 HRLKQRRPPYPKSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFG 300
           HRLKQRRPPYP SP +AEF A+FPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFG
Sbjct: 61  HRLKQRRPPYPMSPVVAEFAAKFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFG 120

Query: 301 KTEVALRAIRCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEK 360
           KTEVA+RAI CVV+AKKQAMVLAPTIVLAKQHFDVISERF+VYPDIKVGLLSRFQT++EK
Sbjct: 121 KTEVAMRAIHCVVAAKKQAMVLAPTIVLAKQHFDVISERFSVYPDIKVGLLSRFQTRSEK 180

Query: 361 EEHLESIKSGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVL 420
           E +LE IK+G+LDIIVGTHSLLGNRVVY+NLGLLVVDEEQRFGVKQKE+IA+FKTSVDVL
Sbjct: 181 EAYLEMIKNGDLDIIVGTHSLLGNRVVYNNLGLLVVDEEQRFGVKQKERIASFKTSVDVL 240

Query: 421 TLSATPIPRTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQV 480
           TLSATPIPRTLYLALTGFRDASLI+TPPPERVPIKT LSSFSK+KVISAIKYELDR GQV
Sbjct: 241 TLSATPIPRTLYLALTGFRDASLISTPPPERVPIKTQLSSFSKDKVISAIKYELDRSGQV 300

Query: 481 FYVLPRIKGLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVE 540
           FYVLPRIKGLEE MEFLEE+FPDVEIA+ HGKQ+SKQLEDTMEKF LGEIKILISTNIVE
Sbjct: 301 FYVLPRIKGLEEAMEFLEEAFPDVEIAVAHGKQFSKQLEDTMEKFTLGEIKILISTNIVE 360

Query: 541 SGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSA 600
           SGLDIQNANTII+QDVQQFGLAQLYQLRGRVGRADKEAYAYL YPDK+LL+DQALERL+A
Sbjct: 361 SGLDIQNANTIIIQDVQQFGLAQLYQLRGRVGRADKEAYAYLFYPDKSLLTDQALERLAA 420

Query: 601 LEECRELGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEH 657
           LEECRELGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSK  +H
Sbjct: 421 LEECRELGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKSPKH 477


>Q0ISD4_ORYSJ (tr|Q0ISD4) Os11g0533100 protein (Fragment) OS=Oryza sativa subsp.
           japonica GN=Os11g0533100 PE=4 SV=2
          Length = 823

 Score =  890 bits (2300), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/624 (65%), Positives = 524/624 (83%)

Query: 197 CLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPYPKSPAM 256
           C P+E ++P+ LSKLND S WEKR+ KGK+A+QKMVV+LMELYL R++Q+RPPYPK   M
Sbjct: 200 CRPHEKQRPRNLSKLNDPSTWEKRRLKGKLAVQKMVVNLMELYLQRMRQKRPPYPKPVGM 259

Query: 257 AEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAIRCVVSAK 316
            +FTA+FPYEPTPDQ QAFIDV+KDLTERETPMDRLICGDVGFGKTEVA+RAI  V+SA 
Sbjct: 260 DQFTAEFPYEPTPDQNQAFIDVDKDLTERETPMDRLICGDVGFGKTEVAMRAIFIVISAG 319

Query: 317 KQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKSGELDIIV 376
            QAMVLAPT++LAKQH+DV+SERF+ YPDIKV + S  QTK EK+E +  I++G+L IIV
Sbjct: 320 FQAMVLAPTVILAKQHYDVMSERFSNYPDIKVAMFSGAQTKEEKDELITKIRNGDLHIIV 379

Query: 377 GTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPRTLYLALT 436
           GTH++L  R+ Y+NLGLLVVDEEQ+FGV+QKEKIA++K S+DVLTLSATPIPRTLYLALT
Sbjct: 380 GTHAVLTERMAYNNLGLLVVDEEQKFGVQQKEKIASYKASIDVLTLSATPIPRTLYLALT 439

Query: 437 GFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEVMEF 496
           GFRDASL++TPPPERV ++T++S FSKE+ +SAIK+EL RGGQVFYV+PRIK +++V++F
Sbjct: 440 GFRDASLMSTPPPERVAVRTYVSGFSKERALSAIKFELARGGQVFYVVPRIKAIDDVLQF 499

Query: 497 LEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNANTIIVQDV 556
           L++S PDV +A+ HGK+ SK ++  MEKFA GE+KIL+ T+I+ESG+DI NANT++VQ  
Sbjct: 500 LKDSLPDVPMAVAHGKKVSKNIQLAMEKFACGEVKILVCTHIIESGIDIPNANTMVVQYA 559

Query: 557 QQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQGFQLAER 616
           + FGLAQLYQLRGRVGR+  E +AYL Y DK+LLS  A +RL A+EE  +LGQGF +AE+
Sbjct: 560 ELFGLAQLYQLRGRVGRSGTEGFAYLFYTDKSLLSKIATDRLGAIEEHSDLGQGFHVAEK 619

Query: 617 DMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQVDININPH 676
           DMGIRGFG++FGEQQ+GDV NVGIDLFF+MLF+SLSKV++  ++ VPY  VQ+DINI+  
Sbjct: 620 DMGIRGFGSLFGEQQSGDVANVGIDLFFDMLFDSLSKVDQFCLIPVPYKDVQLDINISSR 679

Query: 677 LPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLLKKLYLRRM 736
           L SEYI++LENP+E++NEA + AEKD W+L+QFTE+LRRQYGKEPR ME+LLKKLY+RRM
Sbjct: 680 LSSEYISYLENPVELLNEAAKAAEKDLWTLIQFTEDLRRQYGKEPRDMELLLKKLYVRRM 739

Query: 737 AADIGINRIYSSGKTVFMKANITKKVFKMMTDSMTSDIYRNSLVLEGDQIKAXXXXXXXX 796
           AAD+GI+RIYSSGK + MK N+ KKVF++M ++M+ + +RNSL   G +IK         
Sbjct: 740 AADLGISRIYSSGKMIIMKTNMNKKVFRLMREAMSLETHRNSLSFTGKEIKGELLVNLPD 799

Query: 797 XXXXNWIFQCVAELHASLPALIKY 820
               NW+F C+A+ +A +PAL+KY
Sbjct: 800 TLLLNWLFHCLADCYAVIPALVKY 823


>B7F5N3_ORYSJ (tr|B7F5N3) CarD-like transcriptional regulator family protein,
           expressed OS=Oryza sativa subsp. japonica
           GN=LOC_Os11g32880 PE=2 SV=1
          Length = 590

 Score =  844 bits (2180), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/590 (65%), Positives = 496/590 (84%)

Query: 231 MVVDLMELYLHRLKQRRPPYPKSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMD 290
           MVV+LMELYL R++Q+RPPYPK   M +FTA+FPYEPTPDQ QAFIDV+KDLTERETPMD
Sbjct: 1   MVVNLMELYLQRMRQKRPPYPKPVGMDQFTAEFPYEPTPDQNQAFIDVDKDLTERETPMD 60

Query: 291 RLICGDVGFGKTEVALRAIRCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGL 350
           RLICGDVGFGKTEVA+RAI  V+SA  QAMVLAPT++LAKQH+DV+SERF+ YPDIKV +
Sbjct: 61  RLICGDVGFGKTEVAMRAIFIVISAGFQAMVLAPTVILAKQHYDVMSERFSNYPDIKVAM 120

Query: 351 LSRFQTKAEKEEHLESIKSGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKI 410
            S  QTK EK+E +  I++G+L IIVGTH++L  R+ Y+NLGLLVVDEEQ+FGV+QKEKI
Sbjct: 121 FSGAQTKEEKDELITKIRNGDLHIIVGTHAVLTERMAYNNLGLLVVDEEQKFGVQQKEKI 180

Query: 411 ATFKTSVDVLTLSATPIPRTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAI 470
           A++K S+DVLTLSATPIPRTLYLALTGFRDASL++TPPPERV ++T++S FSKE+ +SAI
Sbjct: 181 ASYKASIDVLTLSATPIPRTLYLALTGFRDASLMSTPPPERVAVRTYVSGFSKERALSAI 240

Query: 471 KYELDRGGQVFYVLPRIKGLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEI 530
           K+EL RGGQVFYV+PRIK +++V++FL++S PDV +A+ HGK+ SK ++  MEKFA GE+
Sbjct: 241 KFELARGGQVFYVVPRIKAIDDVLQFLKDSLPDVPMAVAHGKKVSKNIQLAMEKFACGEV 300

Query: 531 KILISTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLL 590
           KIL+ T+I+ESG+DI NANT++VQ  + FGLAQLYQLRGRVGR+  E +AYL Y DK+LL
Sbjct: 301 KILVCTHIIESGIDIPNANTMVVQYAELFGLAQLYQLRGRVGRSGTEGFAYLFYTDKSLL 360

Query: 591 SDQALERLSALEECRELGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFES 650
           S  A +RL A+EE  +LGQGF +AE+DMGIRGFG++FGEQQ+GDV NVGIDLFF+MLF+S
Sbjct: 361 SKIATDRLGAIEEHSDLGQGFHVAEKDMGIRGFGSLFGEQQSGDVANVGIDLFFDMLFDS 420

Query: 651 LSKVEEHRVVAVPYHSVQVDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFT 710
           LSKV++  ++ VPY  VQ+DINI+  L SEYI++LENP+E++NEA + AEKD W+L+QFT
Sbjct: 421 LSKVDQFCLIPVPYKDVQLDINISSRLSSEYISYLENPVELLNEAAKAAEKDLWTLIQFT 480

Query: 711 ENLRRQYGKEPRPMEVLLKKLYLRRMAADIGINRIYSSGKTVFMKANITKKVFKMMTDSM 770
           E+LRRQYGKEPR ME+LLKKLY+RRMAAD+GI+RIYSSGK + MK N+ KKVF++M ++M
Sbjct: 481 EDLRRQYGKEPRDMELLLKKLYVRRMAADLGISRIYSSGKMIIMKTNMNKKVFRLMREAM 540

Query: 771 TSDIYRNSLVLEGDQIKAXXXXXXXXXXXXNWIFQCVAELHASLPALIKY 820
           + + +RNSL   G +IK             NW+F C+A+ +A +PAL+KY
Sbjct: 541 SLETHRNSLSFTGKEIKGELLVNLPDTLLLNWLFHCLADCYAVIPALVKY 590


>A9S9T2_PHYPA (tr|A9S9T2) Uncharacterized protein OS=Physcomitrella patens subsp.
           patens GN=PHYPADRAFT_210013 PE=4 SV=1
          Length = 792

 Score =  843 bits (2178), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/759 (55%), Positives = 546/759 (71%), Gaps = 12/759 (1%)

Query: 70  LDNDPISLLNERIRRDHGKREVSRTVMDKKEAEKYIQLVKEQQQRGLQ------KLKGER 123
           LD     L NE +R        S   +D   A+K  + ++EQ++ G+Q      K +G+ 
Sbjct: 37  LDELHHQLENESVRSGG---NASDKPLDGVAAKKMKERLQEQRRHGMQAISNMMKQRGQG 93

Query: 124 VGKDGN-FSYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMA 182
           V  DG  FSY VDP TL  G+YVVHK+VG+G FIGIK +VP    +P +Y++++YADG+A
Sbjct: 94  VAVDGEAFSYAVDPDTLSPGEYVVHKRVGVGCFIGIKYEVPAGKTKPAKYIYLKYADGVA 153

Query: 183 KLPVKQSSKMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHR 242
           KL  KQ+S++LYRY  P +  +   LSKLND   WEKR +KGK+AIQK+VV++MELY+HR
Sbjct: 154 KLRAKQASRLLYRYFSPGDVGRAPVLSKLNDPGNWEKRVSKGKLAIQKLVVNMMELYIHR 213

Query: 243 LKQRRPPYPK-SPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGK 301
           LKQ RP YPK S  M  F A+FPY+ T DQ QA  DVE+D+TERETPMDRLICGDVGFGK
Sbjct: 214 LKQTRPVYPKNSKLMDSFAAKFPYKETSDQVQAIADVERDMTERETPMDRLICGDVGFGK 273

Query: 302 TEVALRAIRCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKE 361
           TEVALRA+    SA +QAM+LAPT VLAKQH+DVI +RFA Y D+KV LLSRFQ   EK+
Sbjct: 274 TEVALRALFLAASAGRQAMLLAPTTVLAKQHYDVIRQRFAGY-DMKVALLSRFQKDGEKK 332

Query: 362 EHLESIKSGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLT 421
           E +  I  G L I+VGTHSLLGN+V Y NLGLLVVDEEQRFGV+QKE+I + KTSVDVLT
Sbjct: 333 EVIAGISDGSLSIVVGTHSLLGNQVRYHNLGLLVVDEEQRFGVRQKERITSMKTSVDVLT 392

Query: 422 LSATPIPRTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVF 481
           LSATPIPRTLYLAL+GFRDASLITTPP ER PI THL  F+ E V  AI +EL RGGQVF
Sbjct: 393 LSATPIPRTLYLALSGFRDASLITTPPAERRPITTHLMEFNPEAVKKAIDFELKRGGQVF 452

Query: 482 YVLPRIKGLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVES 541
           YV+PR+KG+EE    LE  FPDV I + HG+Q +  LE++ME+F+ G   IL+ T+IVES
Sbjct: 453 YVVPRVKGMEESKAILESYFPDVGIGVAHGQQSATVLEESMEQFSEGTYLILLCTSIVES 512

Query: 542 GLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSAL 601
           GLDI+  NTII++DVQ FGLAQLYQLRGRVGR+D+EA+AY+ +P K  LSD ALERL AL
Sbjct: 513 GLDIRRVNTIIIEDVQLFGLAQLYQLRGRVGRSDREAHAYMFHPSKENLSDDALERLVAL 572

Query: 602 EECRELGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVA 661
           E+C  LGQGFQLAERDM IRG G++FGE+Q+GDV  +G+DL+ EMLFE LS V+  ++  
Sbjct: 573 EDCCGLGQGFQLAERDMAIRGIGSVFGEKQSGDVAKIGVDLYLEMLFEGLSNVDLQKLPE 632

Query: 662 VPYHSVQVDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEP 721
           V +  VQ+D+ ++ H+P +Y+       +++ +AE+ A     +LMQFT  LR +YG EP
Sbjct: 633 VTFEEVQLDLAVSTHIPGDYVTSAALRDKVLRDAEKAANNGMNALMQFTNRLRNEYGPEP 692

Query: 722 RPMEVLLKKLYLRRMAADIGINRIYSSGKTVFMKANITKKVFKMMTDSMTSDIYRNSLVL 781
             +E+LLK LY++R+AAD+GI+RI + GKTV M   +  + ++M++ ++T+   ++SL  
Sbjct: 693 PTVEMLLKTLYVKRLAADLGIHRIRTRGKTVVMDTKMEPEAYEMLSSAITTASVQDSLTY 752

Query: 782 EGDQIKAXXXXXXXXXXXXNWIFQCVAELHASLPALIKY 820
           E  +I+               +F C+AE+   LP+ +KY
Sbjct: 753 ESGRIEMKGLIGLPVERQLERVFVCLAEMRNGLPSFVKY 791


>D8R247_SELML (tr|D8R247) Putative uncharacterized protein OS=Selaginella
           moellendorffii GN=SELMODRAFT_83786 PE=4 SV=1
          Length = 693

 Score =  770 bits (1989), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/694 (55%), Positives = 502/694 (72%), Gaps = 5/694 (0%)

Query: 130 FSYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQS 189
            SY VDP  L +G+Y+VHKKVGIG F+ +K +VP+    P +YV++ YADGMAKLP KQ+
Sbjct: 1   MSYNVDPEKLISGEYIVHKKVGIGQFVSLKEEVPEGGKSPQKYVYLRYADGMAKLPAKQA 60

Query: 190 SKMLYRYCLPNEN-KKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRP 248
            ++LYRY  P E+ K+  ALSKLND S WEKR+T+G +  Q+ VV ++++Y+ RLKQ+RP
Sbjct: 61  RRLLYRYFRPGESVKRYPALSKLNDRSQWEKRRTEGSLDAQRRVVKMIDVYIRRLKQKRP 120

Query: 249 PYPKS-PAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALR 307
            Y K  PAM++F  +FPY PTPDQ +AF+DVE+DLT+ ETPMDRLICGDVGFGKTEVA+R
Sbjct: 121 VYSKDVPAMSKFAGKFPYTPTPDQIKAFLDVERDLTDAETPMDRLICGDVGFGKTEVAMR 180

Query: 308 AIRCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESI 367
           AI   VSAKKQ MVLAPT VLAKQH + I ERFA +PDIKV LLSRFQ   ++   +  I
Sbjct: 181 AIFYAVSAKKQVMVLAPTTVLAKQHHESIKERFANFPDIKVALLSRFQNNVDRRAVIAGI 240

Query: 368 KSGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPI 427
             G ++I VGTHSLLGN + Y N+GLLVVDEEQRFGV QKEKI+T KT+VD+LTLSATPI
Sbjct: 241 NDGVVNIAVGTHSLLGNNIQYENVGLLVVDEEQRFGVAQKEKISTLKTTVDILTLSATPI 300

Query: 428 PRTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRI 487
           PRTL++AL+GFRDASL+TTPPPER PIKTH+  +S++ V  AIK ELDR GQVFYV+PRI
Sbjct: 301 PRTLHMALSGFRDASLMTTPPPERRPIKTHVCVYSQDMVKDAIKAELDRRGQVFYVVPRI 360

Query: 488 KG-LEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQ 546
           +G +E   + L+   P V+++I HGK+ + +LE TM KF      IL+ TNI+ESGLDI 
Sbjct: 361 QGNMESTEKKLKLLVPGVQVSIAHGKKCATELEATMTKFTEKGTSILLCTNIIESGLDIP 420

Query: 547 NANTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRE 606
             NTIIV++VQ FGLAQ+YQLRGRVGRADK A+AY+L+P K+ LS  ALERLSALE+C  
Sbjct: 421 TVNTIIVENVQMFGLAQIYQLRGRVGRADKVAHAYMLHPPKDFLSSDALERLSALEDCCA 480

Query: 607 LGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHS 666
           LGQGFQLAERDM IRG G+IFGE+Q+G+   VG+DL+ EMLFE++SKV   +  ++P   
Sbjct: 481 LGQGFQLAERDMAIRGIGSIFGEKQSGEFSKVGVDLYAEMLFEAISKVNSAQYHSLPQLE 540

Query: 667 VQVDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEV 726
            + D+ +  H+    ++ ++    + + AE  A+K    L++FTE LR + GKEP P+E 
Sbjct: 541 YE-DVQVKRHMWISILSSMQWE-AVTDSAEEAAKKGIKDLVRFTEKLRSERGKEPPPLEA 598

Query: 727 LLKKLYLRRMAADIGINRIYSSGKTVFMKANITKKVFKMMTDSMTSDIYRNSLVLEGDQI 786
           LLK +Y +RMAAD+GI+ I + GK + M  N+    F+++  SM S   ++SL     ++
Sbjct: 599 LLKTIYAKRMAADLGIHHIQTRGKQITMLTNMNADAFQVLHCSMASPPLKSSLSFSNGRL 658

Query: 787 KAXXXXXXXXXXXXNWIFQCVAELHASLPALIKY 820
           +               +FQC+AEL   L + + Y
Sbjct: 659 ELHSLVELPSEFQLERLFQCLAELRRGLASFLTY 692


>D8QSX3_SELML (tr|D8QSX3) Putative uncharacterized protein OS=Selaginella
           moellendorffii GN=SELMODRAFT_77276 PE=4 SV=1
          Length = 704

 Score =  762 bits (1968), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/705 (54%), Positives = 502/705 (71%), Gaps = 16/705 (2%)

Query: 130 FSYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQS 189
            SY VDP  L +G+Y+VHKKVGIG F+ +K +VP+    P +YV++ YADGMAKLP KQ+
Sbjct: 1   MSYNVDPEKLISGEYIVHKKVGIGQFVSLKEEVPEGGKSPQKYVYLRYADGMAKLPAKQA 60

Query: 190 SKMLYRY-----------CLPNEN-KKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLME 237
            ++LYRY             P E+ K+  ALSKLND S WEKR+T+G +  Q+ VV +++
Sbjct: 61  RRLLYRYFRHSSFFFVFFSSPGESVKRYPALSKLNDRSQWEKRRTEGSLDAQRRVVKMID 120

Query: 238 LYLHRLKQRRPPYPKS-PAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGD 296
           +Y+ RLKQ+RP Y K  PAM++F  +FPY PTPDQ +AF+DVE+DLT+ ETPMDRLICGD
Sbjct: 121 VYIRRLKQKRPVYSKDVPAMSKFAGKFPYTPTPDQIKAFLDVERDLTDAETPMDRLICGD 180

Query: 297 VGFGKTEVALRAIRCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQT 356
           VGFGKTEVA+RAI   VSAKKQ MVLAPT VLAKQH + I ERFA +PDIKV LLSRFQ 
Sbjct: 181 VGFGKTEVAMRAIFYAVSAKKQVMVLAPTTVLAKQHHESIKERFANFPDIKVALLSRFQN 240

Query: 357 KAEKEEHLESIKSGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTS 416
             ++   +  I  G ++I VGTHSLLGN + Y  +GLLVVDEEQRFGV QKEKI+T KT+
Sbjct: 241 NVDRRAVIAGINDGVVNIAVGTHSLLGNNIQYEKVGLLVVDEEQRFGVAQKEKISTLKTT 300

Query: 417 VDVLTLSATPIPRTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDR 476
           VD+LTLSATPIPRTL++AL+GFRDASL+TTPPPER PIKTH+  +S++ V  AIK ELDR
Sbjct: 301 VDILTLSATPIPRTLHMALSGFRDASLMTTPPPERRPIKTHVCVYSQDMVKDAIKAELDR 360

Query: 477 GGQVFYVLPRIKG-LEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILIS 535
            GQVFYV+PRI+G +E   + L+   P V+++I HGK+ + +LE TM KF      IL+ 
Sbjct: 361 QGQVFYVVPRIQGNMESTEKKLKLLVPGVQVSIAHGKKCATELEATMTKFTEKGTSILLC 420

Query: 536 TNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQAL 595
           TNI+ESGLDI   NTIIV++VQ FGLAQ+YQLRGRVGRADK A+AY+L+P K+ LS  AL
Sbjct: 421 TNIIESGLDIPTVNTIIVENVQMFGLAQIYQLRGRVGRADKVAHAYMLHPPKDFLSSDAL 480

Query: 596 ERLSALEECRELGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVE 655
           ERLSALE+C  LGQGFQLAERDM IRG G+IFGE+Q+G+   VG+DL+ EMLFE++SKV 
Sbjct: 481 ERLSALEDCCALGQGFQLAERDMAIRGIGSIFGEKQSGEFSKVGVDLYAEMLFEAISKVN 540

Query: 656 EHRVVAVPYHSVQVDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRR 715
             +  ++P    + D+ +  H+    ++ ++    + + AE  A+K    L++FTENLR 
Sbjct: 541 SAQYHSLPQLEYE-DVQVKRHMWISILSSMQWE-AVTDSAEEAAKKGIKDLVRFTENLRS 598

Query: 716 QYGKEPRPMEVLLKKLYLRRMAADIGINRIYSSGKTVFMKANITKKVFKMMTDSMTSDIY 775
           + GKEP P+E LLK +Y +RMAAD+GI+ I + GK + M  N+    F+++  SM S   
Sbjct: 599 ERGKEPPPLEALLKTIYAKRMAADLGIHHIQTRGKQITMLTNMNADAFQVLHCSMASPPL 658

Query: 776 RNSLVLEGDQIKAXXXXXXXXXXXXNWIFQCVAELHASLPALIKY 820
           ++SL     +++               +FQC+AEL   L + + Y
Sbjct: 659 KSSLSFSNGRLELHSLVELPSEFQLERLFQCLAELRRGLASFLTY 703


>M0TRK5_MUSAM (tr|M0TRK5) Uncharacterized protein OS=Musa acuminata subsp.
           malaccensis PE=4 SV=1
          Length = 432

 Score =  691 bits (1782), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/420 (77%), Positives = 371/420 (88%)

Query: 401 RFGVKQKEKIATFKTSVDVLTLSATPIPRTLYLALTGFRDASLITTPPPERVPIKTHLSS 460
           RFGVKQKEKIA+FKTSVDVLTLSATPIPRTLYLALTGFRDASLI+TPPPERV IKTHLSS
Sbjct: 13  RFGVKQKEKIASFKTSVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERVRIKTHLSS 72

Query: 461 FSKEKVISAIKYELDRGGQVFYVLPRIKGLEEVMEFLEESFPDVEIAIGHGKQYSKQLED 520
           +SKEKV+SAIK+ELDRGGQVFYVLPRI+GLEEV +FLE+SFP+  +AI HGKQYSKQLE 
Sbjct: 73  YSKEKVLSAIKFELDRGGQVFYVLPRIRGLEEVKDFLEDSFPNATVAIAHGKQYSKQLEK 132

Query: 521 TMEKFALGEIKILISTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAYA 580
           TMEKF+LGEIKILI TNIVESGLDIQNANTI+VQDV QFGLAQLYQLRGRVGRADKEAYA
Sbjct: 133 TMEKFSLGEIKILICTNIVESGLDIQNANTIVVQDVHQFGLAQLYQLRGRVGRADKEAYA 192

Query: 581 YLLYPDKNLLSDQALERLSALEECRELGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGI 640
           YL YPDK+LLSDQA ERL+A+EE  +LGQGF LAERDMGIRGFG IFGEQQTGD+GNVGI
Sbjct: 193 YLFYPDKSLLSDQATERLAAIEEYGDLGQGFHLAERDMGIRGFGNIFGEQQTGDIGNVGI 252

Query: 641 DLFFEMLFESLSKVEEHRVVAVPYHSVQVDININPHLPSEYINHLENPMEIINEAERVAE 700
           DLFFEMLFESLSKVEE+R+++VPY+ VQ+DINI PHL SEYI +L+NP+E+I E ER AE
Sbjct: 253 DLFFEMLFESLSKVEENRLLSVPYNRVQLDINIKPHLSSEYITYLDNPLELIKEGERAAE 312

Query: 701 KDTWSLMQFTENLRRQYGKEPRPMEVLLKKLYLRRMAADIGINRIYSSGKTVFMKANITK 760
            D WSL+QFTE LR+QYGKEP  ME+LLKKLY+RRMAAD+GI++IY+ GKTV M   ++K
Sbjct: 313 NDMWSLIQFTEQLRQQYGKEPHSMELLLKKLYVRRMAADLGISKIYTGGKTVIMDTKMSK 372

Query: 761 KVFKMMTDSMTSDIYRNSLVLEGDQIKAXXXXXXXXXXXXNWIFQCVAELHASLPALIKY 820
           KVFK+MT+SMTSDIYRN L   G++IKA            NWIFQC+AE +A LPAL+KY
Sbjct: 373 KVFKLMTESMTSDIYRNCLNFTGNEIKAELLLELPKEQLLNWIFQCLAEFYAVLPALVKY 432


>K9XWW4_STAC7 (tr|K9XWW4) Transcription-repair coupling factor (Precursor)
            OS=Stanieria cyanosphaera (strain ATCC 29371 / PCC 7437)
            GN=Sta7437_3057 PE=4 SV=1
          Length = 1172

 Score =  579 bits (1493), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 305/643 (47%), Positives = 426/643 (66%), Gaps = 19/643 (2%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S +VD   L  GD+VVHK  GIG FI ++  + +      EYV I+YADG+ ++P   S 
Sbjct: 497  SKQVDLNKLNPGDFVVHKHHGIGKFINLETILHR------EYVTIQYADGLLRIPT-DSL 549

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
             ++ R+       +P  L+K+ D   W + K + +  ++K+ VDL++LY  R K     Y
Sbjct: 550  DLISRFR--QVGNRPPVLNKMADKG-WTRTKNQVRKTVKKLAVDLLKLYAKRAKLTGHAY 606

Query: 251  P-KSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
            P  +P   E    FPY+PTPDQ +A  DV+ DL E + PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 607  PGDNPWQQELEDSFPYQPTPDQLKAIQDVKLDL-ESDRPMDRLVCGDVGFGKTEVAIRAI 665

Query: 310  -RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIK 368
             + V S  KQ   LAPT +L +QH+  + ERFA YP I +GLL+RF+T +EK+E ++ + 
Sbjct: 666  FKVVTSGHKQVAFLAPTTILTQQHYHTLKERFAPYP-INIGLLNRFRTNSEKKEIMQRLA 724

Query: 369  SGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIP 428
            +GELD++VGTH LL   V + NLGLLV+DEEQRFGV QKEKI  FKT VDVLTLSATPIP
Sbjct: 725  TGELDVVVGTHQLLSKEVSFKNLGLLVIDEEQRFGVNQKEKIKEFKTLVDVLTLSATPIP 784

Query: 429  RTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIK 488
            RTLY++L+G R+ SLITTPPP R PIKTHLS ++ E V +AI+ ELDRGGQ+FYV+PR++
Sbjct: 785  RTLYMSLSGIREMSLITTPPPSRRPIKTHLSPYNPEVVRTAIRNELDRGGQIFYVVPRVE 844

Query: 489  GLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNA 548
            G+EEV   + E  P + IAI HG+    +LE TM  F+ GE  IL+ T I+ESGLDI   
Sbjct: 845  GIEEVAAQIREMIPGIRIAIAHGQMPESELESTMITFSNGEADILVCTTIIESGLDIPRV 904

Query: 549  NTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELG 608
            NTIIV+D Q+FGL+QLYQLRGRVGRA  +A+A+LLYP+K  LSD A +RL AL+E  +LG
Sbjct: 905  NTIIVEDSQKFGLSQLYQLRGRVGRAGIQAHAWLLYPNKQTLSDPARKRLRALQEFSQLG 964

Query: 609  QGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQ 668
             G+QLA RDM IRG G++ G +Q+G +  +G DL+ EML ES+ +++   +  +     Q
Sbjct: 965  SGYQLATRDMEIRGVGSLLGAEQSGQMTAIGFDLYMEMLQESIKEIQGQEIPQI--DDTQ 1022

Query: 669  VDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLL 728
            +D+N+   +P++YI  LE  M         + K    L Q     R +YG+ P   + L+
Sbjct: 1023 IDLNLTAFIPADYIPDLEQKMSAYRAVAASSSKT--ELKQIEAEWRNRYGEIPPAAQQLI 1080

Query: 729  KKLYLRRMAADIGINRIYSSGK-TVFMKANITKKVFKMMTDSM 770
            + + L+++A  IG +RI + GK  + ++  + +  +K++ + +
Sbjct: 1081 QVMELKQIAKAIGFSRIKAEGKQNLVLETPMAEPAWKLLEEKL 1123


>K9WCW6_9CYAN (tr|K9WCW6) Transcription-repair coupling factor Mfd (Precursor)
            OS=Microcoleus sp. PCC 7113 GN=Mic7113_1511 PE=4 SV=1
          Length = 1166

 Score =  577 bits (1486), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 304/652 (46%), Positives = 429/652 (65%), Gaps = 15/652 (2%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S +VDP  L+ GDYVVHK  GIG F+  K++    + E  EY+ I+YADG+ ++   Q  
Sbjct: 488  SKQVDPNKLQQGDYVVHKNHGIGKFL--KLESLTLNYETREYLVIQYADGLLRVAADQLG 545

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
             +L R+    E  +P  L+K++  + WEK K + +  I+K+ VDL++LY  R +++   Y
Sbjct: 546  -VLSRFRATGE--RPPELNKMSGKA-WEKTKNRVRKGIKKLAVDLLQLYAQRSQRQGFSY 601

Query: 251  P-KSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
            P  SP   E    FPY+PTPDQ +A  DV++D+   + PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 602  PLDSPWQEELEDSFPYQPTPDQLKAVQDVKRDMMS-DRPMDRLVCGDVGFGKTEVAIRAI 660

Query: 310  RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKS 369
               V+A KQ   LAPT +L +QH+  I ERFA YP I VGLL+RF+T  E++E  + + +
Sbjct: 661  FKAVTAGKQVAFLAPTTILTQQHYHTIKERFAPYP-IHVGLLNRFRTAEERKEIQKRLAT 719

Query: 370  GELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPR 429
            GELD++VGTH LLG  V + +LGLLV+DEEQRFGV QKEKI + KT VDVLTLSATPIPR
Sbjct: 720  GELDVVVGTHQLLGKGVTFRDLGLLVIDEEQRFGVNQKEKIKSLKTQVDVLTLSATPIPR 779

Query: 430  TLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKG 489
            TLY++L+G R+ SLITTPPP R PIKTHLS +  E + +AI+ ELDRGGQ+FYV+PRI+G
Sbjct: 780  TLYMSLSGVREMSLITTPPPSRRPIKTHLSPYDPEAMRTAIRTELDRGGQIFYVVPRIEG 839

Query: 490  LEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNAN 549
            +EEV   L E  P   +AI HG+    +LE TM  F  GE  +L+ T I+ESGLDI   N
Sbjct: 840  IEEVGTQLREMIPGCRLAIAHGQMNDAELEATMLAFGNGEADVLVCTTIIESGLDIPRVN 899

Query: 550  TIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQ 609
            TI+++D  +FGLAQLYQLRGRVGRA  +A+A+L YP + +LS+QA +RL A++E  +LG 
Sbjct: 900  TILIEDAHKFGLAQLYQLRGRVGRAGIQAHAWLFYPKQKVLSEQARQRLRAIQEFTQLGS 959

Query: 610  GFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQV 669
            G+QLA RDM IRG G + G +Q+G +  +G DL+ EML E++ +++   +  V     Q+
Sbjct: 960  GYQLATRDMEIRGVGNLLGVEQSGQMEAIGFDLYMEMLQEAIKEIQGQEIPKV--DDTQI 1017

Query: 670  DININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLLK 729
            D+N+   +P++YI  L+  M           KD   L+Q   +   +YG  P     LL+
Sbjct: 1018 DLNLTAFIPADYIPDLDQKMSAYRAVASAESKD--ELVQIAADWSDRYGPIPTAANQLLR 1075

Query: 730  KLYLRRMAADIGINRIYSSGKT-VFMKANITKKVFKMMTDSMTSDIYRNSLV 780
             + L+++A  +G +RI   GK  V ++  + +  + ++ + +   + R+ LV
Sbjct: 1076 VVELKQIAKSLGFSRIKPEGKQHVILETPMEEPAWNLLKEKLPEHL-RSRLV 1126


>B4WRL4_9SYNE (tr|B4WRL4) Transcription-repair coupling factor OS=Synechococcus sp.
            PCC 7335 GN=S7335_2553 PE=4 SV=1
          Length = 1177

 Score =  575 bits (1481), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 305/646 (47%), Positives = 432/646 (66%), Gaps = 14/646 (2%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S +VDP  LR  DY+VH+  GIG F+  K++      E  EY+ I+YADG+ ++PV Q  
Sbjct: 498  SKQVDPNKLRPKDYIVHRNHGIGQFL--KLESLTVDKETREYLVIQYADGLLRVPVDQMG 555

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
              L RY    E ++P+ L+K+   + WEK K K + AI+K+ VDL++LY  R + +   Y
Sbjct: 556  S-LSRYRTSVE-QRPQ-LNKMTGKA-WEKTKGKARKAIKKVAVDLLKLYAQRSQMQGFTY 611

Query: 251  PKS-PAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
            P+  P   E    FPY PTPDQ +A  DV++D+ E + PMDRL+CGDVGFGKTEVALRA+
Sbjct: 612  PEDMPWQQELEDSFPYNPTPDQLKATQDVKRDM-ESDRPMDRLVCGDVGFGKTEVALRAV 670

Query: 310  RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKS 369
               V+A KQ  +LAPT +L +QH+  + ERFA YP I++GLL+RF+T  E+++ L  + S
Sbjct: 671  FKAVTAGKQVALLAPTTILTQQHYHTLKERFAPYP-IQIGLLNRFRTAKERKDILLRLIS 729

Query: 370  GELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPR 429
            GELD++VGTH LLG  V + +LGLLVVDEEQRFGV QKEKI   K  VDVLTLSATPIPR
Sbjct: 730  GELDVVVGTHQLLGKTVKFKDLGLLVVDEEQRFGVNQKEKIKAMKAQVDVLTLSATPIPR 789

Query: 430  TLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKG 489
            TLY+AL+G R+ SLITTPPP R PIKTHLS +  EKV +AI+ ELDRGGQ+FYV+PR++G
Sbjct: 790  TLYMALSGVREMSLITTPPPSRRPIKTHLSPYDPEKVRTAIRQELDRGGQIFYVVPRVEG 849

Query: 490  LEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNAN 549
            +EEV   + E+ P V +AI HG+    +LE TM  F+ G+  +++ T I+ESGLDI   N
Sbjct: 850  IEEVAGRIREAVPGVRLAIAHGQMPEGELEATMLTFSNGDADLMVCTTIIESGLDIPRVN 909

Query: 550  TIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQ 609
            TII++D Q+FGL+QLYQLRGRVGR+  +A+A+LL+P +N LSD+A +RL A++E  +LG 
Sbjct: 910  TIIIEDSQKFGLSQLYQLRGRVGRSGIQAHAWLLFPKQNQLSDKARKRLRAIQEFTQLGS 969

Query: 610  GFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQV 669
            G+QLA RDM IRG G + G QQ+G +  +G DL+ +ML ES++++    +  V     QV
Sbjct: 970  GYQLAMRDMEIRGIGNLLGAQQSGQMEVIGFDLYMDMLEESIAEIRGQEIPQV--DETQV 1027

Query: 670  DININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLLK 729
            D+ +   +P++YI  L+  M +      V       L++   +L   YG  P  +  L+K
Sbjct: 1028 DLKVTAFIPADYIPELDQKMSVYRSL--VGASTRRELIEIVADLNDHYGSLPSAVGQLVK 1085

Query: 730  KLYLRRMAADIGINRIYSSGKT-VFMKANITKKVFKMMTDSMTSDI 774
             L L+++A  +G +RI +  K  V ++  + K  + ++ + + + +
Sbjct: 1086 VLELKQIAKPLGFSRIRTEDKQHVVLETPMEKPAWALLHEKVPAHL 1131


>K9T876_9CYAN (tr|K9T876) Transcription-repair coupling factor Mfd OS=Pleurocapsa
            sp. PCC 7327 GN=Ple7327_3951 PE=4 SV=1
          Length = 1177

 Score =  574 bits (1480), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 305/643 (47%), Positives = 422/643 (65%), Gaps = 19/643 (2%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S +VD   LR GDYVVHK  GIG F+ ++      +    EY+ I+YADG+ ++P   S 
Sbjct: 502  SKQVDLNKLRPGDYVVHKSHGIGKFVKLE------TLSDREYLAIQYADGLLRVPAD-SF 554

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
              L RY       +P  L K++  + WE  K + + +++K+ VDL+ LY  R +     Y
Sbjct: 555  DSLSRYR--QAGNRPPELHKMSGKA-WEATKNRVRKSVRKLAVDLLNLYAKRSQLSGHAY 611

Query: 251  PK-SPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
            P  +P  AE    FPY+PTPDQ +A  DV+ DL E + PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 612  PADTPWQAELEDSFPYQPTPDQLKAIQDVKIDL-ESDRPMDRLVCGDVGFGKTEVAIRAI 670

Query: 310  -RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIK 368
             + V SA KQ   LAPT +L +QH+  + ERFA YP I VGLL+RF+T +EK+E L+ + 
Sbjct: 671  FKAVTSAHKQVAFLAPTTILTQQHYHTLKERFAPYP-INVGLLNRFRTASEKKEILQRLA 729

Query: 369  SGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIP 428
            +GELDI+VGTH LLG  V + +LG+LV+DEEQRFGV QKEKI   KT VDVLTL+ATPIP
Sbjct: 730  TGELDIVVGTHQLLGKEVKFRDLGMLVIDEEQRFGVNQKEKIKAMKTQVDVLTLTATPIP 789

Query: 429  RTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIK 488
            RTLY++L+G R+ SLITTPPP R PIKTHLS ++ E V +AI+ ELDRGGQVFYV+PR++
Sbjct: 790  RTLYMSLSGIREMSLITTPPPSRRPIKTHLSPYNLEVVRTAIRNELDRGGQVFYVVPRVE 849

Query: 489  GLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNA 548
            G+EE    L ++ P   I + HG+  S +LE TM  F  GE  IL+ T I+ESGLDI   
Sbjct: 850  GIEETAGQLGQTIPSARIVVAHGQMDSSELEATMLAFNNGEADILVCTTIIESGLDIPRV 909

Query: 549  NTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELG 608
            NTIIV+D Q FGL+QLYQLRGRVGR+  +A+A+LLYP K  L+D A +RL AL+E  +LG
Sbjct: 910  NTIIVEDAQLFGLSQLYQLRGRVGRSGVQAHAWLLYPSKGTLTDTARQRLRALQEFTQLG 969

Query: 609  QGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQ 668
             G+QLA RDM IRG G + G +Q+G +  +G +L+ EML E++ +++   +  V     Q
Sbjct: 970  SGYQLATRDMEIRGVGNLLGVEQSGQMEAIGFELYMEMLQEAIEEIQGQEIPQV--DDAQ 1027

Query: 669  VDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLL 728
            +D+ +   +P++YI  LE  M+          K    L Q   +   +YGK P P+E LL
Sbjct: 1028 IDLKLTAFIPTDYIPDLEQKMDAYRAVALANSKR--ELQQIAADWNDRYGKLPTPVEQLL 1085

Query: 729  KKLYLRRMAADIGINRIYSSG-KTVFMKANITKKVFKMMTDSM 770
            K + L+++A  +G +R+   G + V ++  + +  +K++ + +
Sbjct: 1086 KVVELKQIAKSLGFSRVKPDGSQHVILETPMEEPAWKLLQEKL 1128


>Q8DKA7_THEEB (tr|Q8DKA7) Transcription-repair coupling factor
            OS=Thermosynechococcus elongatus (strain BP-1) GN=tll0952
            PE=4 SV=1
          Length = 1142

 Score =  573 bits (1477), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 301/644 (46%), Positives = 429/644 (66%), Gaps = 14/644 (2%)

Query: 133  KVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSSKM 192
            +VD   L+ GDYVVH++ GIG F+ ++     N  E  EY+ ++YADG+ ++   Q +  
Sbjct: 468  QVDLNKLQPGDYVVHRQHGIGQFLRLETLTINN--ETREYLVLQYADGILRVAADQLNS- 524

Query: 193  LYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPYP- 251
            L RY    E++ P+ L+KL   + WE+ K + + AI+K+ VDL++LY  R +QR   +P 
Sbjct: 525  LSRYRT-QEDRAPQ-LNKLTGNT-WERTKARVRKAIKKVAVDLLQLYAQRAQQRGFAFPP 581

Query: 252  KSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAIRC 311
             +P   E    FPY+PTPDQ +A  +V+ D+ E + PMDRL+CGDVGFGKTEVA+RAI  
Sbjct: 582  DTPWQREMEDSFPYQPTPDQLKAIQEVKADM-ESDRPMDRLVCGDVGFGKTEVAIRAIFK 640

Query: 312  VVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKSGE 371
             V A KQ  VLAPT +L +QH+  + ERFA YP I+VGLL+RF+++ E+++ L+ +K GE
Sbjct: 641  AVMAGKQVAVLAPTTILTQQHYHTLKERFAPYP-IQVGLLNRFRSERERQDLLQKLKIGE 699

Query: 372  LDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPRTL 431
            +D++VGTH LL N V + +LGLLVVDEEQRFGV QKEKI   KT VDVLTLSATPIPRTL
Sbjct: 700  IDVVVGTHQLLSNSVKFRDLGLLVVDEEQRFGVNQKEKIKALKTQVDVLTLSATPIPRTL 759

Query: 432  YLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKGLE 491
            Y+AL+G R+ SLITTPPP R PI+THL+ +  E V SAI+ ELDRGGQVFYV+PR++G+E
Sbjct: 760  YMALSGVREMSLITTPPPSRRPIQTHLAPYDPETVRSAIRQELDRGGQVFYVVPRVEGIE 819

Query: 492  EVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNANTI 551
             V   L+       I I HG+    +LE TM  F+ GE  IL+ T I+ESGLDI   NTI
Sbjct: 820  AVAAKLQGMVVGARILIAHGQMAEGELESTMLGFSNGEADILVCTTIIESGLDIPRVNTI 879

Query: 552  IVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQGF 611
            +V+D Q+FGLAQLYQLRGRVGRA  +A+A+L YP + +L+D A +RL A++E  +LG G+
Sbjct: 880  LVEDAQRFGLAQLYQLRGRVGRAGIQAHAWLFYPRQEVLTDAARQRLRAIQEFTQLGSGY 939

Query: 612  QLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQVDI 671
            QLA RDM IRG G + G QQ G + +VG DL+ E+L E+++++    +  V     Q+D+
Sbjct: 940  QLAIRDMEIRGVGNLLGAQQHGQLDSVGFDLYVELLEEAIAEIRGQEIPTV--DDTQIDL 997

Query: 672  NINPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLLKKL 731
            N+   +P++Y+  L   M           K+   LMQ       +YG  P+ ++ LL+ +
Sbjct: 998  NVTAFIPADYMPDLAQKMAAYRAVSAATTKE--DLMQLAAEWSDRYGALPKSVQQLLRVV 1055

Query: 732  YLRRMAADIGINRIYSSGKT-VFMKANITKKVFKMMTDSMTSDI 774
             L+++A   GI+RI   GK  V ++ ++ +  +K++ + + + +
Sbjct: 1056 ELKQLARQCGISRIRPEGKQHVILETSMAEPAWKLLLEQLPTHL 1099


>B8HS88_CYAP4 (tr|B8HS88) Transcription-repair coupling factor OS=Cyanothece sp.
            (strain PCC 7425 / ATCC 29141) GN=Cyan7425_1827 PE=4 SV=1
          Length = 1169

 Score =  573 bits (1476), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 302/621 (48%), Positives = 420/621 (67%), Gaps = 15/621 (2%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S +VDP  L+ GDYVVH++ GIG F+  K++    + E  EY+ ++YADG+ ++ V Q  
Sbjct: 490  SKQVDPNKLQPGDYVVHRQHGIGKFL--KLESLTINRETREYLVLQYADGLLRVAVDQLG 547

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
              L R+    E + P+ L+K+   + WE+ K+K + AI+K+ VDL++LY  R +Q+   +
Sbjct: 548  S-LSRFRATAE-QAPE-LNKMTGKA-WERTKSKVRKAIRKIAVDLLQLYAQRSQQQGFAF 603

Query: 251  P-KSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
            P   P   E    FPY+PTPDQ +A  DV++D+ E + PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 604  PLDQPWQEELEESFPYQPTPDQVKAIQDVKRDM-ESDRPMDRLVCGDVGFGKTEVAVRAI 662

Query: 310  RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKS 369
               ++A KQ   LAPT +L +QH+  + ERFA YP I++GLL+RF++  E++  L+ +K+
Sbjct: 663  FKAITAGKQVAFLAPTTILTQQHYHTLKERFAPYP-IQIGLLNRFRSADERKNILQRLKT 721

Query: 370  GELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPR 429
            GELD++VGTH LLG  VV+ +LGLLV+DEEQRFGV QKEKI T KT VDVLTLSATPIPR
Sbjct: 722  GELDVVVGTHQLLGKGVVFRDLGLLVIDEEQRFGVNQKEKIKTLKTQVDVLTLSATPIPR 781

Query: 430  TLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKG 489
            TLY+AL+G R+ SLITTPPP R PIKTHL+ +  E + SA++ ELDRGGQVFYV+PR++G
Sbjct: 782  TLYMALSGVREMSLITTPPPSRRPIKTHLAPYDPETIRSALRQELDRGGQVFYVVPRVEG 841

Query: 490  LEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNAN 549
            +EEV   L E  P   IAI HG+    +LE TM  F  GE +IL+ T I+ESGLDI   N
Sbjct: 842  IEEVAAKLREMVPSARIAIAHGQMEEGELEATMLTFNNGEAEILVCTTIIESGLDIPRVN 901

Query: 550  TIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQ 609
            TI+++D Q+FGL+QLYQLRGRVGRA  +A+A+L YP  N+L++ A +RL AL+E  +LG 
Sbjct: 902  TILIEDAQKFGLSQLYQLRGRVGRAGIQAHAWLFYPKLNMLTEAARQRLRALQEFTQLGS 961

Query: 610  GFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQV 669
            G+QLA RDM IRG G + G +Q G +  VG DL+ EML E+++++    +  V     Q+
Sbjct: 962  GYQLAMRDMEIRGVGNLLGAEQHGQMDTVGFDLYMEMLDEAIAEIRGQEIPKV--DDTQI 1019

Query: 670  DININPHLPSEYINHLENPMEIINEAERVAEKD-TWSLMQFTENLRRQYGKEPRPMEVLL 728
            D+N+   +P++YI  L+  M        VA  D T  L Q   +   +YG  P     L+
Sbjct: 1020 DLNLTAFIPADYIPDLDQKMSAYRA---VASADSTVELAQIKTDWNDRYGPIPSAALQLI 1076

Query: 729  KKLYLRRMAADIGINRIYSSG 749
            + + L+++A  +G +RI   G
Sbjct: 1077 RVVELKQIAKKLGFSRIKPEG 1097


>L8M3X5_9CYAN (tr|L8M3X5) Transcription-repair coupling factor Mfd (Precursor)
            OS=Xenococcus sp. PCC 7305 GN=Xen7305DRAFT_00018010 PE=4
            SV=1
          Length = 1163

 Score =  573 bits (1476), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 304/622 (48%), Positives = 423/622 (68%), Gaps = 18/622 (2%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S KVD   LR GDYVVH+  GIG FI ++    +      EY+ I+YADG+ ++P   S 
Sbjct: 495  SQKVDLNKLRPGDYVVHRSHGIGKFIELETLYSR------EYLAIKYADGLLRVPA-DSL 547

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
              + RY    ++K    L+K++D S W K KTK +  I+K+ VDL++LY  R K+    Y
Sbjct: 548  DTISRYRRTGKSKP--VLNKMSDKS-WSKTKTKVRKNIKKLAVDLVKLYAKRSKRSGFAY 604

Query: 251  PK-SPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
            P+ +P   E    FPY+PT DQ +A  DV+ DL E + PMDRL+CGDVGFGKTEVA+R+I
Sbjct: 605  PQDNPWQKELEDSFPYQPTTDQLKAVQDVKLDL-ESDRPMDRLVCGDVGFGKTEVAVRSI 663

Query: 310  -RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIK 368
             + + SA KQ  +LAPT +L +QH+  I ERFA YP I VGLL+RF+T AEK+E ++ + 
Sbjct: 664  FKVITSANKQVALLAPTTILTQQHYHTIKERFAPYP-INVGLLNRFRTNAEKKEIMQRLA 722

Query: 369  SGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIP 428
            +GELDI+VGTH LLG  V + +LG+LV+DEEQRFGV QKEKI  +K+ VDVLTLSATPIP
Sbjct: 723  TGELDIVVGTHQLLGKDVKFKDLGMLVIDEEQRFGVNQKEKIKAYKSQVDVLTLSATPIP 782

Query: 429  RTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIK 488
            RTLY++L+G R+ SLITTPPP R PIKTHLS ++ E V SAI+ ELDRGGQ+FYV+PR++
Sbjct: 783  RTLYMSLSGIREMSLITTPPPSRRPIKTHLSPYNPEVVRSAIRNELDRGGQIFYVVPRVE 842

Query: 489  GLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNA 548
            G+EE+   L E  P   IAI HG+    +LE TM  F+ GE  ILI T I+ESGLDI   
Sbjct: 843  GIEELGGQLREMIPSARIAIAHGQMPESELEATMLTFSNGEADILICTTIIESGLDIPRV 902

Query: 549  NTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELG 608
            NTII++D Q+FGL+QLYQLRGRVGR+  +A+A+LLYP++  L++ A +RL AL+E  +LG
Sbjct: 903  NTIIIEDAQRFGLSQLYQLRGRVGRSGIQAHAWLLYPNQQSLTETARKRLRALQEFSQLG 962

Query: 609  QGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQ 668
             G+QLA RDM IRG G + G +Q+G + ++G DL+ EML E++ +++   +  V     Q
Sbjct: 963  SGYQLATRDMEIRGVGNLLGAEQSGQMISIGFDLYMEMLQEAIQEIQGQEIPQV--EDTQ 1020

Query: 669  VDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLL 728
            VD+ +   +P++YI+ ++  M+       V+ K    L Q   +   +YG+ P P+  L+
Sbjct: 1021 VDLKVTAFIPADYISDMDQKMDAYRSVATVSSKK--ELTQIAVDWCDRYGELPTPVVQLI 1078

Query: 729  KKLYLRRMAADIGINRIYSSGK 750
            + + L+++A  +G +R+   GK
Sbjct: 1079 QVMELKQIAKPLGFSRVKPEGK 1100


>F7UST4_SYNYG (tr|F7UST4) Transcription-repair coupling factor OS=Synechocystis sp.
            (strain PCC 6803 / GT-S) GN=mfd PE=4 SV=1
          Length = 1162

 Score =  573 bits (1476), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 309/647 (47%), Positives = 425/647 (65%), Gaps = 19/647 (2%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S +VD   L  GDYVVHK  GIG F+  K+D   N     EY+ I+YADG+ ++P   S 
Sbjct: 482  SKQVDINKLSPGDYVVHKSHGIGKFL--KLDALANR----EYLMIQYADGILRVPA-DSL 534

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
              L R+   +   +P  L K+    VWE  K K + A++K+ VDL+ LY  R KQ    Y
Sbjct: 535  DSLSRFR--HTGTRPPELHKMGG-KVWEATKNKVRKAVKKLAVDLLNLYAKRAKQVGYAY 591

Query: 251  P-KSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
            P  SP   E    FPY+PTPDQ +A  DV++DL E + PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 592  PPDSPWQQELEDSFPYQPTPDQLKAVQDVKRDL-EGDRPMDRLVCGDVGFGKTEVAVRAI 650

Query: 310  -RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIK 368
             + V S  KQ  +LAPT VL +QH+  + ERFA YP I +GLL+RF+T +EK+E L  +K
Sbjct: 651  FKAVTSGNKQVALLAPTTVLTQQHYHTLKERFAPYP-ITIGLLNRFRTASEKKEILAKLK 709

Query: 369  SGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIP 428
            SGELDI+VGT  +LG  V + +LGLLV+DEEQRFGV QKEKI T KT VDVLTL+ATPIP
Sbjct: 710  SGELDIVVGTQQVLGTSVKFKDLGLLVIDEEQRFGVNQKEKIKTLKTEVDVLTLTATPIP 769

Query: 429  RTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIK 488
            RTLY++L+G R+ SLITTPPP R PIKTHLS ++ E + +AI+ ELDRGGQVFYV+PRI+
Sbjct: 770  RTLYMSLSGIREMSLITTPPPSRRPIKTHLSPYNPEVIRTAIRNELDRGGQVFYVVPRIE 829

Query: 489  GLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNA 548
            G+EE+   L +  P   IAIGHG+    +LE TM  F  GE  IL+ T I+E+GLDI   
Sbjct: 830  GIEELGGQLRQMVPSARIAIGHGQMEESELESTMLAFNDGEADILVCTTIIEAGLDIPRV 889

Query: 549  NTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELG 608
            NTIIV+D Q+FGLAQLYQLRGRVGR+  +A+A+LLYP++  L+++A  RL AL+E  +LG
Sbjct: 890  NTIIVEDAQKFGLAQLYQLRGRVGRSGIQAHAWLLYPNQKQLTEKARLRLRALQEFSQLG 949

Query: 609  QGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQ 668
             G+QLA RDM IRG G + G +Q+G +  +G + + EML +++ +++   +  V     Q
Sbjct: 950  SGYQLATRDMEIRGVGNLLGAEQSGQMEAIGYEFYMEMLQDAIKEIQGQEIPKV--EDTQ 1007

Query: 669  VDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLL 728
            +D+ +   +PS+YI  LE  M        +   D   L +   +   +YG  P P+E L 
Sbjct: 1008 IDLPLTAFIPSDYIPDLEEKMAAYRRITSIESTD--ELPKIALDWGDRYGMLPSPVEELF 1065

Query: 729  KKLYLRRMAADIGINRIYSSGK-TVFMKANITKKVFKMMTDSMTSDI 774
            K + L+ +A  +G +RI   GK  + ++  + +  +K++ +++ + +
Sbjct: 1066 KVVKLKHLAKSLGFSRIKVEGKQNLVLETPMEEPAWKLLAENLPNHL 1112


>L8APW1_9SYNC (tr|L8APW1) Transcription-repair coupling factor OS=Synechocystis sp.
            PCC 6803 GN=mfd PE=4 SV=1
          Length = 1162

 Score =  573 bits (1476), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 309/647 (47%), Positives = 425/647 (65%), Gaps = 19/647 (2%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S +VD   L  GDYVVHK  GIG F+  K+D   N     EY+ I+YADG+ ++P   S 
Sbjct: 482  SKQVDINKLSPGDYVVHKSHGIGKFL--KLDALANR----EYLMIQYADGILRVPA-DSL 534

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
              L R+   +   +P  L K+    VWE  K K + A++K+ VDL+ LY  R KQ    Y
Sbjct: 535  DSLSRFR--HTGTRPPELHKMGG-KVWEATKNKVRKAVKKLAVDLLNLYAKRAKQVGYAY 591

Query: 251  P-KSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
            P  SP   E    FPY+PTPDQ +A  DV++DL E + PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 592  PPDSPWQQELEDSFPYQPTPDQLKAVQDVKRDL-EGDRPMDRLVCGDVGFGKTEVAVRAI 650

Query: 310  -RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIK 368
             + V S  KQ  +LAPT VL +QH+  + ERFA YP I +GLL+RF+T +EK+E L  +K
Sbjct: 651  FKAVTSGNKQVALLAPTTVLTQQHYHTLKERFAPYP-ITIGLLNRFRTASEKKEILAKLK 709

Query: 369  SGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIP 428
            SGELDI+VGT  +LG  V + +LGLLV+DEEQRFGV QKEKI T KT VDVLTL+ATPIP
Sbjct: 710  SGELDIVVGTQQVLGTSVKFKDLGLLVIDEEQRFGVNQKEKIKTLKTEVDVLTLTATPIP 769

Query: 429  RTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIK 488
            RTLY++L+G R+ SLITTPPP R PIKTHLS ++ E + +AI+ ELDRGGQVFYV+PRI+
Sbjct: 770  RTLYMSLSGIREMSLITTPPPSRRPIKTHLSPYNPEVIRTAIRNELDRGGQVFYVVPRIE 829

Query: 489  GLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNA 548
            G+EE+   L +  P   IAIGHG+    +LE TM  F  GE  IL+ T I+E+GLDI   
Sbjct: 830  GIEELGGQLRQMVPSARIAIGHGQMEESELESTMLAFNDGEADILVCTTIIEAGLDIPRV 889

Query: 549  NTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELG 608
            NTIIV+D Q+FGLAQLYQLRGRVGR+  +A+A+LLYP++  L+++A  RL AL+E  +LG
Sbjct: 890  NTIIVEDAQKFGLAQLYQLRGRVGRSGIQAHAWLLYPNQKQLTEKARLRLRALQEFSQLG 949

Query: 609  QGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQ 668
             G+QLA RDM IRG G + G +Q+G +  +G + + EML +++ +++   +  V     Q
Sbjct: 950  SGYQLATRDMEIRGVGNLLGAEQSGQMEAIGYEFYMEMLQDAIKEIQGQEIPKV--EDTQ 1007

Query: 669  VDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLL 728
            +D+ +   +PS+YI  LE  M        +   D   L +   +   +YG  P P+E L 
Sbjct: 1008 IDLPLTAFIPSDYIPDLEEKMAAYRRITSIESTD--ELPKIALDWGDRYGMLPSPVEELF 1065

Query: 729  KKLYLRRMAADIGINRIYSSGK-TVFMKANITKKVFKMMTDSMTSDI 774
            K + L+ +A  +G +RI   GK  + ++  + +  +K++ +++ + +
Sbjct: 1066 KVVKLKHLAKSLGFSRIKVEGKQNLVLETPMEEPAWKLLAENLPNHL 1112


>H0PGJ8_9SYNC (tr|H0PGJ8) Transcription-repair coupling factor OS=Synechocystis sp.
            PCC 6803 substr. PCC-P GN=mfd PE=4 SV=1
          Length = 1162

 Score =  573 bits (1476), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 309/647 (47%), Positives = 425/647 (65%), Gaps = 19/647 (2%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S +VD   L  GDYVVHK  GIG F+  K+D   N     EY+ I+YADG+ ++P   S 
Sbjct: 482  SKQVDINKLSPGDYVVHKSHGIGKFL--KLDALANR----EYLMIQYADGILRVPA-DSL 534

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
              L R+   +   +P  L K+    VWE  K K + A++K+ VDL+ LY  R KQ    Y
Sbjct: 535  DSLSRFR--HTGTRPPELHKMGG-KVWEATKNKVRKAVKKLAVDLLNLYAKRAKQVGYAY 591

Query: 251  P-KSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
            P  SP   E    FPY+PTPDQ +A  DV++DL E + PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 592  PPDSPWQQELEDSFPYQPTPDQLKAVQDVKRDL-EGDRPMDRLVCGDVGFGKTEVAVRAI 650

Query: 310  -RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIK 368
             + V S  KQ  +LAPT VL +QH+  + ERFA YP I +GLL+RF+T +EK+E L  +K
Sbjct: 651  FKAVTSGNKQVALLAPTTVLTQQHYHTLKERFAPYP-ITIGLLNRFRTASEKKEILAKLK 709

Query: 369  SGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIP 428
            SGELDI+VGT  +LG  V + +LGLLV+DEEQRFGV QKEKI T KT VDVLTL+ATPIP
Sbjct: 710  SGELDIVVGTQQVLGTSVKFKDLGLLVIDEEQRFGVNQKEKIKTLKTEVDVLTLTATPIP 769

Query: 429  RTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIK 488
            RTLY++L+G R+ SLITTPPP R PIKTHLS ++ E + +AI+ ELDRGGQVFYV+PRI+
Sbjct: 770  RTLYMSLSGIREMSLITTPPPSRRPIKTHLSPYNPEVIRTAIRNELDRGGQVFYVVPRIE 829

Query: 489  GLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNA 548
            G+EE+   L +  P   IAIGHG+    +LE TM  F  GE  IL+ T I+E+GLDI   
Sbjct: 830  GIEELGGQLRQMVPSARIAIGHGQMEESELESTMLAFNDGEADILVCTTIIEAGLDIPRV 889

Query: 549  NTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELG 608
            NTIIV+D Q+FGLAQLYQLRGRVGR+  +A+A+LLYP++  L+++A  RL AL+E  +LG
Sbjct: 890  NTIIVEDAQKFGLAQLYQLRGRVGRSGIQAHAWLLYPNQKQLTEKARLRLRALQEFSQLG 949

Query: 609  QGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQ 668
             G+QLA RDM IRG G + G +Q+G +  +G + + EML +++ +++   +  V     Q
Sbjct: 950  SGYQLATRDMEIRGVGNLLGAEQSGQMEAIGYEFYMEMLQDAIKEIQGQEIPKV--EDTQ 1007

Query: 669  VDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLL 728
            +D+ +   +PS+YI  LE  M        +   D   L +   +   +YG  P P+E L 
Sbjct: 1008 IDLPLTAFIPSDYIPDLEEKMAAYRRITSIESTD--ELPKIALDWGDRYGMLPSPVEELF 1065

Query: 729  KKLYLRRMAADIGINRIYSSGK-TVFMKANITKKVFKMMTDSMTSDI 774
            K + L+ +A  +G +RI   GK  + ++  + +  +K++ +++ + +
Sbjct: 1066 KVVKLKHLAKSLGFSRIKVEGKQNLVLETPMEEPAWKLLAENLPNHL 1112


>H0PBL5_9SYNC (tr|H0PBL5) Transcription-repair coupling factor OS=Synechocystis sp.
            PCC 6803 substr. PCC-N GN=mfd PE=4 SV=1
          Length = 1162

 Score =  573 bits (1476), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 309/647 (47%), Positives = 425/647 (65%), Gaps = 19/647 (2%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S +VD   L  GDYVVHK  GIG F+  K+D   N     EY+ I+YADG+ ++P   S 
Sbjct: 482  SKQVDINKLSPGDYVVHKSHGIGKFL--KLDALANR----EYLMIQYADGILRVPA-DSL 534

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
              L R+   +   +P  L K+    VWE  K K + A++K+ VDL+ LY  R KQ    Y
Sbjct: 535  DSLSRFR--HTGTRPPELHKMGG-KVWEATKNKVRKAVKKLAVDLLNLYAKRAKQVGYAY 591

Query: 251  P-KSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
            P  SP   E    FPY+PTPDQ +A  DV++DL E + PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 592  PPDSPWQQELEDSFPYQPTPDQLKAVQDVKRDL-EGDRPMDRLVCGDVGFGKTEVAVRAI 650

Query: 310  -RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIK 368
             + V S  KQ  +LAPT VL +QH+  + ERFA YP I +GLL+RF+T +EK+E L  +K
Sbjct: 651  FKAVTSGNKQVALLAPTTVLTQQHYHTLKERFAPYP-ITIGLLNRFRTASEKKEILAKLK 709

Query: 369  SGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIP 428
            SGELDI+VGT  +LG  V + +LGLLV+DEEQRFGV QKEKI T KT VDVLTL+ATPIP
Sbjct: 710  SGELDIVVGTQQVLGTSVKFKDLGLLVIDEEQRFGVNQKEKIKTLKTEVDVLTLTATPIP 769

Query: 429  RTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIK 488
            RTLY++L+G R+ SLITTPPP R PIKTHLS ++ E + +AI+ ELDRGGQVFYV+PRI+
Sbjct: 770  RTLYMSLSGIREMSLITTPPPSRRPIKTHLSPYNPEVIRTAIRNELDRGGQVFYVVPRIE 829

Query: 489  GLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNA 548
            G+EE+   L +  P   IAIGHG+    +LE TM  F  GE  IL+ T I+E+GLDI   
Sbjct: 830  GIEELGGQLRQMVPSARIAIGHGQMEESELESTMLAFNDGEADILVCTTIIEAGLDIPRV 889

Query: 549  NTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELG 608
            NTIIV+D Q+FGLAQLYQLRGRVGR+  +A+A+LLYP++  L+++A  RL AL+E  +LG
Sbjct: 890  NTIIVEDAQKFGLAQLYQLRGRVGRSGIQAHAWLLYPNQKQLTEKARLRLRALQEFSQLG 949

Query: 609  QGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQ 668
             G+QLA RDM IRG G + G +Q+G +  +G + + EML +++ +++   +  V     Q
Sbjct: 950  SGYQLATRDMEIRGVGNLLGAEQSGQMEAIGYEFYMEMLQDAIKEIQGQEIPKV--EDTQ 1007

Query: 669  VDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLL 728
            +D+ +   +PS+YI  LE  M        +   D   L +   +   +YG  P P+E L 
Sbjct: 1008 IDLPLTAFIPSDYIPDLEEKMAAYRRITSIESTD--ELPKIALDWGDRYGMLPSPVEELF 1065

Query: 729  KKLYLRRMAADIGINRIYSSGK-TVFMKANITKKVFKMMTDSMTSDI 774
            K + L+ +A  +G +RI   GK  + ++  + +  +K++ +++ + +
Sbjct: 1066 KVVKLKHLAKSLGFSRIKVEGKQNLVLETPMEEPAWKLLAENLPNHL 1112


>H0NZ63_9SYNC (tr|H0NZ63) Transcription-repair coupling factor OS=Synechocystis sp.
            PCC 6803 substr. GT-I GN=mfd PE=4 SV=1
          Length = 1162

 Score =  573 bits (1476), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 309/647 (47%), Positives = 425/647 (65%), Gaps = 19/647 (2%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S +VD   L  GDYVVHK  GIG F+  K+D   N     EY+ I+YADG+ ++P   S 
Sbjct: 482  SKQVDINKLSPGDYVVHKSHGIGKFL--KLDALANR----EYLMIQYADGILRVPA-DSL 534

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
              L R+   +   +P  L K+    VWE  K K + A++K+ VDL+ LY  R KQ    Y
Sbjct: 535  DSLSRFR--HTGTRPPELHKMGG-KVWEATKNKVRKAVKKLAVDLLNLYAKRAKQVGYAY 591

Query: 251  P-KSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
            P  SP   E    FPY+PTPDQ +A  DV++DL E + PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 592  PPDSPWQQELEDSFPYQPTPDQLKAVQDVKRDL-EGDRPMDRLVCGDVGFGKTEVAVRAI 650

Query: 310  -RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIK 368
             + V S  KQ  +LAPT VL +QH+  + ERFA YP I +GLL+RF+T +EK+E L  +K
Sbjct: 651  FKAVTSGNKQVALLAPTTVLTQQHYHTLKERFAPYP-ITIGLLNRFRTASEKKEILAKLK 709

Query: 369  SGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIP 428
            SGELDI+VGT  +LG  V + +LGLLV+DEEQRFGV QKEKI T KT VDVLTL+ATPIP
Sbjct: 710  SGELDIVVGTQQVLGTSVKFKDLGLLVIDEEQRFGVNQKEKIKTLKTEVDVLTLTATPIP 769

Query: 429  RTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIK 488
            RTLY++L+G R+ SLITTPPP R PIKTHLS ++ E + +AI+ ELDRGGQVFYV+PRI+
Sbjct: 770  RTLYMSLSGIREMSLITTPPPSRRPIKTHLSPYNPEVIRTAIRNELDRGGQVFYVVPRIE 829

Query: 489  GLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNA 548
            G+EE+   L +  P   IAIGHG+    +LE TM  F  GE  IL+ T I+E+GLDI   
Sbjct: 830  GIEELGGQLRQMVPSARIAIGHGQMEESELESTMLAFNDGEADILVCTTIIEAGLDIPRV 889

Query: 549  NTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELG 608
            NTIIV+D Q+FGLAQLYQLRGRVGR+  +A+A+LLYP++  L+++A  RL AL+E  +LG
Sbjct: 890  NTIIVEDAQKFGLAQLYQLRGRVGRSGIQAHAWLLYPNQKQLTEKARLRLRALQEFSQLG 949

Query: 609  QGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQ 668
             G+QLA RDM IRG G + G +Q+G +  +G + + EML +++ +++   +  V     Q
Sbjct: 950  SGYQLATRDMEIRGVGNLLGAEQSGQMEAIGYEFYMEMLQDAIKEIQGQEIPKV--EDTQ 1007

Query: 669  VDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLL 728
            +D+ +   +PS+YI  LE  M        +   D   L +   +   +YG  P P+E L 
Sbjct: 1008 IDLPLTAFIPSDYIPDLEEKMAAYRRITSIESTD--ELPKIALDWGDRYGMLPSPVEELF 1065

Query: 729  KKLYLRRMAADIGINRIYSSGK-TVFMKANITKKVFKMMTDSMTSDI 774
            K + L+ +A  +G +RI   GK  + ++  + +  +K++ +++ + +
Sbjct: 1066 KVVKLKHLAKSLGFSRIKVEGKQNLVLETPMEEPAWKLLAENLPNHL 1112


>B4VR37_9CYAN (tr|B4VR37) Transcription-repair coupling factor OS=Coleofasciculus
            chthonoplastes PCC 7420 GN=MC7420_1311 PE=4 SV=1
          Length = 1192

 Score =  572 bits (1475), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 301/643 (46%), Positives = 431/643 (67%), Gaps = 16/643 (2%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S +VDP  L  GDYVVHK  GIG F+  K++    + +  EY+ I+YADG+ ++   Q  
Sbjct: 516  SKQVDPNKLTPGDYVVHKNHGIGQFV--KLESLTLNHQTREYLVIKYADGLLRVAADQVG 573

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
             +L RY     + +   L+K++ +  WEK K + +  I+K+ VDL++LY  R ++    +
Sbjct: 574  -VLSRYR--RADSRAPQLNKMS-SKAWEKTKNRVRKTIKKLAVDLLKLYAQRSQRSGYAF 629

Query: 251  PK-SPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
            P+ S    E    FPY+PTPDQ +A  DV++DL E + PMDRL+CGDVGFGKTEVALRAI
Sbjct: 630  PEDSSWQDELEESFPYQPTPDQLKAVQDVKRDL-ESDRPMDRLVCGDVGFGKTEVALRAI 688

Query: 310  RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKS 369
              V+++ KQ   LAPT +L +QH+  + ERFA YP I VGLL+RF+T  E++E    + +
Sbjct: 689  FKVITSGKQVAFLAPTTILTQQHYHTLKERFAPYP-IHVGLLNRFRTAQERKEIQRRLST 747

Query: 370  GELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPR 429
            GELD++VGTH +LG  V + +LG+LVVDEEQRFGV QKEKI T KT VDVLTL+ATPIPR
Sbjct: 748  GELDVVVGTHQVLGKTVKFRDLGMLVVDEEQRFGVNQKEKIKTLKTQVDVLTLTATPIPR 807

Query: 430  TLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKG 489
            TLY++L+G R+ SLITTPPP R  IKTHL+ ++ E V +AI+ ELDRGGQVFYV+PR++G
Sbjct: 808  TLYMSLSGVREMSLITTPPPSRRSIKTHLAPYNPEAVRTAIRTELDRGGQVFYVVPRVEG 867

Query: 490  LEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNAN 549
            +EEV   L E  P   +AI HG+    +LE TM  F+ GE  ILI T I+ESGLDI   N
Sbjct: 868  IEEVATKLREMIPSARLAIAHGQMPEGELEATMLTFSSGEADILICTTIIESGLDIPRVN 927

Query: 550  TIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQ 609
            TI+++D Q+FGLAQLYQLRGRVGR+  +A+A+L YP ++ LSD A +RL A++E  +LG 
Sbjct: 928  TILIEDAQRFGLAQLYQLRGRVGRSGVQAHAWLFYPKQDTLSDAARKRLRAIQEFTQLGS 987

Query: 610  GFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQV 669
            G+QLA RDM IRG G + G +Q+G +  +G DL+ EML E++ +++   +  V     Q+
Sbjct: 988  GYQLATRDMEIRGVGNLLGAEQSGQMDVIGFDLYMEMLQEAIREIQGQEIPQV--DDTQI 1045

Query: 670  DININPHLPSEYINHLENPMEIINEAERVAEKDTWS-LMQFTENLRRQYGKEPRPMEVLL 728
            D+N+   +P++YI  L+  M        VA  ++ S L+Q   +   +YG  P P+E LL
Sbjct: 1046 DLNLTAFIPADYIPDLDQKMSAYRT---VAAANSHSELVQIAADWHDRYGPLPAPIEQLL 1102

Query: 729  KKLYLRRMAADIGINRIYSSGKT-VFMKANITKKVFKMMTDSM 770
            + + L+++A  +G +RI   GK  + ++  + +  +K++ +++
Sbjct: 1103 RIVELKQVAKSLGFSRIKPEGKQHIALETPMEEPAWKLLKENL 1145


>M1MLV2_9SYNC (tr|M1MLV2) Transcription-repair coupling factor OS=Synechocystis sp.
            PCC 6803 GN=mfd PE=4 SV=1
          Length = 1199

 Score =  572 bits (1475), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 309/647 (47%), Positives = 425/647 (65%), Gaps = 19/647 (2%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S +VD   L  GDYVVHK  GIG F+  K+D   N     EY+ I+YADG+ ++P   S 
Sbjct: 519  SKQVDINKLSPGDYVVHKSHGIGKFL--KLDALANR----EYLMIQYADGILRVPA-DSL 571

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
              L R+   +   +P  L K+    VWE  K K + A++K+ VDL+ LY  R KQ    Y
Sbjct: 572  DSLSRFR--HTGTRPPELHKMGG-KVWEATKNKVRKAVKKLAVDLLNLYAKRAKQVGYAY 628

Query: 251  P-KSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
            P  SP   E    FPY+PTPDQ +A  DV++DL E + PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 629  PPDSPWQQELEDSFPYQPTPDQLKAVQDVKRDL-EGDRPMDRLVCGDVGFGKTEVAVRAI 687

Query: 310  -RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIK 368
             + V S  KQ  +LAPT VL +QH+  + ERFA YP I +GLL+RF+T +EK+E L  +K
Sbjct: 688  FKAVTSGNKQVALLAPTTVLTQQHYHTLKERFAPYP-ITIGLLNRFRTASEKKEILAKLK 746

Query: 369  SGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIP 428
            SGELDI+VGT  +LG  V + +LGLLV+DEEQRFGV QKEKI T KT VDVLTL+ATPIP
Sbjct: 747  SGELDIVVGTQQVLGTSVKFKDLGLLVIDEEQRFGVNQKEKIKTLKTEVDVLTLTATPIP 806

Query: 429  RTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIK 488
            RTLY++L+G R+ SLITTPPP R PIKTHLS ++ E + +AI+ ELDRGGQVFYV+PRI+
Sbjct: 807  RTLYMSLSGIREMSLITTPPPSRRPIKTHLSPYNPEVIRTAIRNELDRGGQVFYVVPRIE 866

Query: 489  GLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNA 548
            G+EE+   L +  P   IAIGHG+    +LE TM  F  GE  IL+ T I+E+GLDI   
Sbjct: 867  GIEELGGQLRQMVPSARIAIGHGQMEESELESTMLAFNDGEADILVCTTIIEAGLDIPRV 926

Query: 549  NTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELG 608
            NTIIV+D Q+FGLAQLYQLRGRVGR+  +A+A+LLYP++  L+++A  RL AL+E  +LG
Sbjct: 927  NTIIVEDAQKFGLAQLYQLRGRVGRSGIQAHAWLLYPNQKQLTEKARLRLRALQEFSQLG 986

Query: 609  QGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQ 668
             G+QLA RDM IRG G + G +Q+G +  +G + + EML +++ +++   +  V     Q
Sbjct: 987  SGYQLATRDMEIRGVGNLLGAEQSGQMEAIGYEFYMEMLQDAIKEIQGQEIPKV--EDTQ 1044

Query: 669  VDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLL 728
            +D+ +   +PS+YI  LE  M        +   D   L +   +   +YG  P P+E L 
Sbjct: 1045 IDLPLTAFIPSDYIPDLEEKMAAYRRITSIESTD--ELPKIALDWGDRYGMLPSPVEELF 1102

Query: 729  KKLYLRRMAADIGINRIYSSGK-TVFMKANITKKVFKMMTDSMTSDI 774
            K + L+ +A  +G +RI   GK  + ++  + +  +K++ +++ + +
Sbjct: 1103 KVVKLKHLAKSLGFSRIKVEGKQNLVLETPMEEPAWKLLAENLPNHL 1149


>K8GNU7_9CYAN (tr|K8GNU7) Transcription-repair coupling factor Mfd
            OS=Oscillatoriales cyanobacterium JSC-12
            GN=OsccyDRAFT_0896 PE=4 SV=1
          Length = 1175

 Score =  570 bits (1470), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 306/623 (49%), Positives = 419/623 (67%), Gaps = 19/623 (3%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S ++DP  L  GDYVVH+  GIG FI  K++    + E  EY+ I+YADG+ ++   Q +
Sbjct: 496  SKQIDPNKLEPGDYVVHRNHGIGKFI--KLESLTINRETREYLVIQYADGLLRVAADQLN 553

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
              L R+      + P  L+K++  + WEK K+K + AI+K+ VDL++LY  R +Q    +
Sbjct: 554  A-LSRFR--GVGEAPPELNKMSGKA-WEKTKSKVRKAIKKVAVDLLQLYAQRAQQIGFSF 609

Query: 251  PK-SPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
            P+ +P   E    FPY+PTPDQ +A  DV+ D+ + + PMDRLICGDVGFGKTEVA+RAI
Sbjct: 610  PEDAPWQQEMEDSFPYQPTPDQLKATQDVKLDM-QSDRPMDRLICGDVGFGKTEVAIRAI 668

Query: 310  RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKS 369
               V+A KQ  +LAPT +L +QH+  + ERFA YP I+VGLL+RF+T  E++E L+ +K+
Sbjct: 669  FKAVTAGKQVALLAPTTILTQQHYHTLKERFAPYP-IQVGLLNRFRTAPERKEILQRMKT 727

Query: 370  GELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPR 429
            GELD++VGTH LLG  V + +LGLLVVDEEQRFGV QKEKI + +T VDVLTLSATPIPR
Sbjct: 728  GELDVVVGTHQLLGKGVEFRDLGLLVVDEEQRFGVNQKEKIKSLRTQVDVLTLSATPIPR 787

Query: 430  TLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKG 489
            TLY+AL+G R+ SLITTPPP R PIKTHL+ +  E V SAI+ ELDRGGQVFYV+PR++G
Sbjct: 788  TLYMALSGVREMSLITTPPPSRRPIKTHLAPYDPEVVRSAIRQELDRGGQVFYVVPRVEG 847

Query: 490  LEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNAN 549
            +EEV   L E  P V IAI HG+    +LE TM  F+ GE +IL+ T I+ESGLDI   N
Sbjct: 848  IEEVSARLREMVPGVRIAIAHGQMPEGELESTMLTFSEGEAEILVCTTIIESGLDIPRVN 907

Query: 550  TIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQ 609
            TI+++D  +FGL+QLYQLRGRVGR+  +A+A+L YP    L+D A +RL A++E  +LG 
Sbjct: 908  TILIEDANRFGLSQLYQLRGRVGRSGIQAHAWLFYPKDAQLTDTARQRLRAIQEFAQLGS 967

Query: 610  GFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQV 669
            G+QLA RDM IRG G + G +Q+G +  VG DL+ EML E++S++    +  V     Q+
Sbjct: 968  GYQLAMRDMEIRGVGNLLGAEQSGQMEAVGFDLYVEMLEEAISEIRGQEIPKV--DDTQI 1025

Query: 670  DININPHLPSEYINHLENPME---IINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEV 726
            D+N+   +P++YI  L+  M     I  A   AE     L Q   +L  +YG  P   + 
Sbjct: 1026 DLNLTAFIPADYIPDLDQKMSAYRAIATANSKAE-----LTQIAADLSDRYGPIPAATQQ 1080

Query: 727  LLKKLYLRRMAADIGINRIYSSG 749
            LL+ + L+++   +G +RI   G
Sbjct: 1081 LLRIVELKQIGKKLGFSRIKPDG 1103


>B7KI22_CYAP7 (tr|B7KI22) Transcription-repair coupling factor OS=Cyanothece sp.
            (strain PCC 7424) GN=PCC7424_3738 PE=4 SV=1
          Length = 1168

 Score =  568 bits (1463), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 301/646 (46%), Positives = 424/646 (65%), Gaps = 25/646 (3%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S +V+   LR GDYVVH+  GIG FI +++       E  EY+ I+YADG  ++P   S 
Sbjct: 496  SKQVNLDKLRPGDYVVHRNHGIGKFIKLEI------LESREYILIQYADGTLRIP-SDSL 548

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
              L RY   + +  P  L K+   + WE+ K K +  ++K+ VDL+ LY  R +Q    Y
Sbjct: 549  DSLSRYR--HTSNTPPQLDKMTGKT-WEQTKQKVRKTVKKLAVDLINLYAKRAQQEGFAY 605

Query: 251  PK-SPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
            P  SP   E    FPY+PTPDQ +A  +V++D+   E PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 606  PDDSPWQQELEDSFPYQPTPDQIKAIQEVKRDMMN-ERPMDRLVCGDVGFGKTEVAVRAI 664

Query: 310  -RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIK 368
             + V S  KQ   LAPT +L +QH+  + ERFA YP I +GLL+RF+T +E  + L+ + 
Sbjct: 665  FKAVTSGNKQVAFLAPTTILTQQHYHTLKERFAPYP-INIGLLNRFRTPSENRDILQRLA 723

Query: 369  SGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIP 428
            +GELDI+VGTH LL N+V + +LGLLV+DEEQRFGV QKEKI T KT VDVLTL+ATPIP
Sbjct: 724  TGELDIVVGTHQLLSNKVKFKDLGLLVIDEEQRFGVNQKEKIKTLKTQVDVLTLTATPIP 783

Query: 429  RTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIK 488
            RTLY++L+G R+ SLITTPPP R PIKTHL+ ++ + + +AI+ ELDRGGQ+FYV+PR++
Sbjct: 784  RTLYMSLSGVREMSLITTPPPSRRPIKTHLTPYNPDALRTAIRNELDRGGQIFYVVPRVE 843

Query: 489  GLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNA 548
            G+EEV   + +  P   IAI HG+    +LE TM  F  GE  IL+ T I+ESGLDI   
Sbjct: 844  GIEEVAAEIRDMIPTARIAIAHGQMSVSELEPTMLAFNNGEADILVCTTIIESGLDIPRV 903

Query: 549  NTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELG 608
            NTIIV+D Q+FGL+QLYQLRGRVGR+  +A+A+L+YP K  L++ A +RL AL+E  +LG
Sbjct: 904  NTIIVEDAQKFGLSQLYQLRGRVGRSGIQAHAWLVYPHKAALTETARQRLRALQEFTQLG 963

Query: 609  QGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQ 668
             G+QLA RDM IRG G + G +Q+G +  +G DL+ EML E++ +++   +  V     Q
Sbjct: 964  SGYQLATRDMEIRGVGNLLGAEQSGQMEAIGFDLYMEMLQEAIREIQGQEIPKV--EDTQ 1021

Query: 669  VDININPHLPSEYINHLENPME---IINEAERVAEKDTWSLMQFTENLRRQYGKEPRPME 725
            +D+ +   +P++YI      M+    I  A   AE     L Q   +L  +YG  P P+E
Sbjct: 1022 IDLKLTAFIPTDYITDANQKMDAYRTIATANSPAE-----LKQIATDLCDRYGALPSPVE 1076

Query: 726  VLLKKLYLRRMAADIGINRIYSSGKT-VFMKANITKKVFKMMTDSM 770
             LL+ + L+++A  +G +RI   GK  V ++  + +  +K++ +++
Sbjct: 1077 QLLQVIELKQLAKSLGFSRIKPDGKQHVILETPMEEPAWKLLEENL 1122


>F4XL60_9CYAN (tr|F4XL60) Transcription-repair coupling factor mfd OS=Moorea
            producens 3L GN=LYNGBM3L_13270 PE=4 SV=1
          Length = 1295

 Score =  567 bits (1461), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 300/644 (46%), Positives = 422/644 (65%), Gaps = 18/644 (2%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S +VDP  LR GDYVVHK  GIG F+  K++    + E  EY+ I+YADG+ ++   Q  
Sbjct: 607  SQQVDPNKLRPGDYVVHKNHGIGQFL--KLEKLSINNETREYLVIKYADGLLRVAADQLG 664

Query: 191  KMLYRYCLPNENKKPKALSKLNDTS--VWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRP 248
             +L R+           L +L+  S   WEK K + + +I+K+ VDL++LY  R +Q   
Sbjct: 665  -VLSRF-----RHTGTGLPQLHKMSGKTWEKTKNRVRKSIKKVAVDLLKLYAQRAQQSGY 718

Query: 249  PYPK-SPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALR 307
             +P  SP   E    FPY+PTPDQ +A  DV++DL E + PMDRL+CGDVGFGKTEVA+R
Sbjct: 719  CFPADSPWQQELEDSFPYQPTPDQLKAIQDVKRDL-ESDRPMDRLVCGDVGFGKTEVAIR 777

Query: 308  AIRCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESI 367
            AI   V++ KQ   LAPT +L +QH+  I ERF+ YP I VGLL+RF++  EK + L+ +
Sbjct: 778  AIFKAVTSNKQVAFLAPTTILTQQHYHTIKERFSPYP-INVGLLNRFRSPQEKRDILQRL 836

Query: 368  KSGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPI 427
            K+GELD++VGTH LLG  V +  LGLLV+DEEQRFGV QKEKI +FKT VDVLTLSATPI
Sbjct: 837  KTGELDVVVGTHQLLGKSVTFRELGLLVIDEEQRFGVNQKEKIKSFKTQVDVLTLSATPI 896

Query: 428  PRTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRI 487
            PRTLY++L+G R+ SLITTPPP R PIKTHLS +  E V +AI+ ELDRGGQVFYV+PR+
Sbjct: 897  PRTLYMSLSGVREMSLITTPPPLRRPIKTHLSPYKPEAVRTAIRMELDRGGQVFYVVPRV 956

Query: 488  KGLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQN 547
            +G+EEV   L E   +  IAI HG+    +LE  M  F+ GE  IL+ T I+ESGLDI  
Sbjct: 957  EGIEEVAAELREMILEARIAIAHGQLDPAELESIMLTFSNGEADILVCTTIIESGLDIPR 1016

Query: 548  ANTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECREL 607
             NTI+++D  +FGLAQLYQLRGRVGRA  +A+A+LLYP++ +LS+ A +RL A++E  +L
Sbjct: 1017 VNTIVIEDAHKFGLAQLYQLRGRVGRAGIQAHAWLLYPNQKVLSEAAKKRLRAIQEFTQL 1076

Query: 608  GQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSV 667
            G G+ LA RDM IRG G + G +Q+G +  +G DL+ EML E++ +++   +  V     
Sbjct: 1077 GSGYLLATRDMEIRGVGNLLGVEQSGQMEAIGFDLYMEMLQEAIKEIQGQEIPQV--DDT 1134

Query: 668  QVDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVL 727
            Q+D+ I   +P++YI  ++  +         A +    L Q   +   +YG  P   E L
Sbjct: 1135 QIDLQITAFIPADYIPDIDQKISAYRGVAAAASQK--ELAQIAADWSDRYGPIPSVAEQL 1192

Query: 728  LKKLYLRRMAADIGINRIYSSGKT-VFMKANITKKVFKMMTDSM 770
            L+ + L+++   +G +RI   GK  + ++  + +  +K++ +++
Sbjct: 1193 LRVMELKQLGKSLGFSRIRPEGKQHILLETPMEEPAWKLLQENL 1236


>K9U0V8_9CYAN (tr|K9U0V8) Transcription-repair coupling factor (Precursor)
            OS=Chroococcidiopsis thermalis PCC 7203 GN=Chro_3003 PE=4
            SV=1
          Length = 1223

 Score =  567 bits (1460), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 298/690 (43%), Positives = 431/690 (62%), Gaps = 15/690 (2%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S +VDP  LR GD+VVH+  GIG F+  +++      E  EY+ ++YADG+ ++   Q  
Sbjct: 545  SKQVDPNKLRPGDFVVHRNHGIGKFL--RLESLTIDRETREYLVVQYADGLLRVAADQLG 602

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
              L R+     + KP  L+K++ +  W   K + + AI+K+ VDL++LY  R +Q    Y
Sbjct: 603  S-LSRFR--ATDSKPPELNKMS-SKAWANTKNRARKAIKKLAVDLLQLYAQRSQQSGYAY 658

Query: 251  P-KSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
            P  SP   E    FPY+PT DQ +A  DV++D+ E + PMDRL+CGDVGFGKTEVA+RA+
Sbjct: 659  PIDSPWQVELEDSFPYQPTTDQLKATQDVKRDM-ESDRPMDRLVCGDVGFGKTEVAIRAV 717

Query: 310  RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKS 369
               V+A KQ   LAPT +L +QH+  + ERFA YP + VGLL+RF++  E+++ L+ + +
Sbjct: 718  FKAVTAGKQVAFLAPTTILTQQHYHTLKERFAPYP-VNVGLLNRFRSAEERKDLLKRLAT 776

Query: 370  GELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPR 429
            GELDI+VGTH LLG  V + +LGLL++DEEQRFGV QKEKI   KT +DVLTLSATPIPR
Sbjct: 777  GELDIVVGTHQLLGKGVSFRDLGLLIIDEEQRFGVNQKEKIKALKTQLDVLTLSATPIPR 836

Query: 430  TLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKG 489
            TLY++L+G R+ SLITTPPP R PIKTHL+ +  E + SAI+ ELDRGGQVFYV+PR++G
Sbjct: 837  TLYMSLSGIREMSLITTPPPSRRPIKTHLAPYDTESIRSAIRQELDRGGQVFYVVPRVEG 896

Query: 490  LEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNAN 549
            +EE    L E      IA+GHG+    QLE TM  F+ GE  IL+ T I+ESGLDI   N
Sbjct: 897  IEETAATLREIVGGARIAVGHGQLDENQLESTMLSFSNGEADILVCTTIIESGLDIPRVN 956

Query: 550  TIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQ 609
            TI+++D  +FGL+QLYQLRGRVGRA  +A+A+L YP +  LSD A +RL A++E  +LG 
Sbjct: 957  TILIEDAHRFGLSQLYQLRGRVGRAGIQAHAWLFYPKQRALSDTARQRLRAIQEFTQLGS 1016

Query: 610  GFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQV 669
            G+ LA RDM IRG G + G +Q+G +  +G DL+ EML E+L ++    +  V     Q+
Sbjct: 1017 GYHLAMRDMEIRGVGNLLGVEQSGQMDAIGFDLYMEMLEEALREIRGQEIPQV--EDTQI 1074

Query: 670  DININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLLK 729
            D+N+   +P++YI  L+  M         A K    L+Q   +   +YG  P     LL+
Sbjct: 1075 DLNLTAFIPTDYITDLDQKMSAYRAV--AAAKTKEELIQLAADWSDRYGAIPTGATQLLR 1132

Query: 730  KLYLRRMAADIGINRIYSSGKT-VFMKANITKKVFKMMTDSMTSDIYRNSLVLEGDQIKA 788
             + L+++A  +G +RI   GK  V ++  + +  + +M  ++  D  R+  V    ++  
Sbjct: 1133 VMELKQLARKLGFSRIKPEGKQHVVLETAMEEPAWNLMIANL-PDSLRSRFVYSPGKVTV 1191

Query: 789  XXXXXXXXXXXXNWIFQCVAELHASLPALI 818
                          +   ++++  ++P  +
Sbjct: 1192 RGLAVLKTEQQLQTLIDALSKMQGAVPETV 1221


>K9RAH1_9CYAN (tr|K9RAH1) Transcription-repair coupling factor Mfd (Precursor)
            OS=Rivularia sp. PCC 7116 GN=Riv7116_1949 PE=4 SV=1
          Length = 1184

 Score =  566 bits (1458), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 298/646 (46%), Positives = 423/646 (65%), Gaps = 14/646 (2%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S KVDP  LR GDYV+H+  G+G F+ ++     N  E  +Y+ ++YADG+ ++   Q  
Sbjct: 504  SKKVDPNKLRPGDYVIHRNHGLGQFLKLESLTLNN--ETRDYLVVKYADGLLRVAADQVG 561

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
              L R+     NK P+ L+K+   + WE  K K +  ++K+ VDL++LY  R +Q    Y
Sbjct: 562  A-LSRFRT-TTNKSPQ-LNKMTGKA-WENTKNKVRKTVKKLAVDLLKLYSQRSQQTGFTY 617

Query: 251  PK-SPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
            P+ SP   E    FPY+PT DQ +A  DV++D+ E E PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 618  PQDSPWQEEMEDSFPYQPTTDQLKATQDVKRDM-ESERPMDRLVCGDVGFGKTEVAIRAI 676

Query: 310  RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKS 369
               V++ KQ  +LAPT +L +QH+  + ERFA YP I VGLL+RF++  EK    + + +
Sbjct: 677  FKAVTSGKQVALLAPTTILTQQHYHTLKERFAPYP-INVGLLNRFRSAEEKRNIQKRLLT 735

Query: 370  GELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPR 429
            GELDI+VGTH LLG  V Y +LGLLVVDEEQRFGV QKEKI + KT VDVLTLSATPIPR
Sbjct: 736  GELDIVVGTHQLLGKSVQYKDLGLLVVDEEQRFGVNQKEKIKSLKTQVDVLTLSATPIPR 795

Query: 430  TLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKG 489
            TLY++L+G R+ SLITTPPP R PI+THLS  + E   +AI+ ELDRGGQVFYV+PR++G
Sbjct: 796  TLYMSLSGIREMSLITTPPPSRRPIQTHLSPMNPEATRTAIRQELDRGGQVFYVVPRVEG 855

Query: 490  LEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNAN 549
            +E+   F+ E  P+  IAI HG+  + +LE  M  F+ GE +ILI T I+ESGLDI   N
Sbjct: 856  IEDKSAFIREMIPNARIAIAHGQMEASELESIMLSFSSGEAEILICTTIIESGLDIPRVN 915

Query: 550  TIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQ 609
            TI+++D Q+FGLAQLYQLRGRVGRA  +A+A+L YP +  LS+ A +RL A++E  +LG 
Sbjct: 916  TILIEDAQKFGLAQLYQLRGRVGRAGIQAHAWLFYPRQRSLSEAARKRLRAIQEFTQLGS 975

Query: 610  GFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQV 669
            G+QLA RDM IRG G + G +Q+G +  +G DL+ EML E++ ++    +  V     Q+
Sbjct: 976  GYQLAMRDMEIRGVGNLLGAEQSGQMNVIGFDLYMEMLEEAIREIRGQEIPTV--EDTQI 1033

Query: 670  DININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLLK 729
            D+N+   +P++YI  L+  M           K   +++    N R  YG  P     LL+
Sbjct: 1034 DLNLTAFIPADYITDLDQKMSAYRAVAVANSKGELAMIAAEWNDR--YGTVPASANQLLR 1091

Query: 730  KLYLRRMAADIGINRIYSSGKT-VFMKANITKKVFKMMTDSMTSDI 774
             + L+++A ++G +RI   GK  + ++  + +  +K++ + +  ++
Sbjct: 1092 VMELKQLAKNLGFSRIKPDGKQHIVLETPMEEPGWKLLAEKLPQNM 1137


>K9ENJ0_9CYAN (tr|K9ENJ0) Transcription-repair coupling factor Mfd (Precursor)
            OS=Leptolyngbya sp. PCC 7375 GN=Lepto7375DRAFT_7952 PE=4
            SV=1
          Length = 1168

 Score =  565 bits (1457), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 302/638 (47%), Positives = 423/638 (66%), Gaps = 14/638 (2%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S KVDP  LR  DYVVH+  GIG F+  K++     AE  EY+ I+YADG+ ++   Q  
Sbjct: 486  SKKVDPNKLRPNDYVVHRNHGIGQFL--KLESLTIDAETREYLVIKYADGLLRVAADQMG 543

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
              L R+    E K+P AL+K+   + WEK KT+ K AIQK+ VDL++LY  R +     Y
Sbjct: 544  S-LSRFRASAE-KRP-ALNKMTGKA-WEKTKTRAKKAIQKVAVDLLKLYAQRSELEGFTY 599

Query: 251  P-KSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
            P   P   E    FPY+PTPDQ +A  DV++D+ E   PMDRL+CGDVGFGKTEVA+R+I
Sbjct: 600  PVDMPWQQELEDSFPYQPTPDQLKATQDVKRDM-ESPRPMDRLVCGDVGFGKTEVAIRSI 658

Query: 310  RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKS 369
               V A KQ  +LAPT +L +QH+  I ER+A YP I+VGLL+RF+T  E+++ ++ + +
Sbjct: 659  FKAVIAGKQVAMLAPTTILTQQHYHTIKERYAPYP-IQVGLLNRFRTANERKDIIQRLAT 717

Query: 370  GELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPR 429
            GELD++VGTH LLG  V + +LGLLVVDEEQRFGV QKEKI   KT VDVLTLSATPIPR
Sbjct: 718  GELDVVVGTHQLLGKAVKFKDLGLLVVDEEQRFGVNQKEKIKAMKTQVDVLTLSATPIPR 777

Query: 430  TLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKG 489
            TLY++L+G R+ SLITTPPP R PI THL+    EKV +AI+ ELDRGGQ+FYV+PR++G
Sbjct: 778  TLYMSLSGVREMSLITTPPPSRRPIITHLAPHDMEKVRAAIRQELDRGGQIFYVVPRVEG 837

Query: 490  LEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNAN 549
            +EE+   + E  P + +A+ HG+    +LE TM  F+ GE  +++ T I+ESGLDI   N
Sbjct: 838  IEEIAARIREMIPSIRLAVAHGQMPEGELEATMLAFSNGEADLMVCTTIIESGLDIPRVN 897

Query: 550  TIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQ 609
            TI+++D Q+FGL+QLYQLRGRVGR+  +A+A+L +P ++ LSD+A +RL A++E  +LG 
Sbjct: 898  TILIEDSQKFGLSQLYQLRGRVGRSGIQAHAWLFFPRQDKLSDKARKRLRAIQEFTQLGS 957

Query: 610  GFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQV 669
            G+QLA RDM IRG G + G QQ+G +  +G DL+ +ML E+++++    +  V     QV
Sbjct: 958  GYQLAMRDMEIRGIGNLLGVQQSGQMEVIGFDLYMDMLQEAIAEIRGQEIPQV--DETQV 1015

Query: 670  DININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLLK 729
            D+ +   +P+ YI   +  M +      VA      LMQ   +L  ++G  P  +E L+K
Sbjct: 1016 DLKLTAFIPNNYIGDTDQKMSVYRSL--VAADTKRELMQIVTDLNDRFGTIPPAVEQLVK 1073

Query: 730  KLYLRRMAADIGINRIYSSGKT-VFMKANITKKVFKMM 766
             L L+++A  +G  +I   GK  V M+  +    +K++
Sbjct: 1074 MLELKQIAKPLGFAKIKPEGKQHVVMETPMEAPAWKLL 1111


>B0CBL0_ACAM1 (tr|B0CBL0) Transcription-repair coupling factor OS=Acaryochloris
            marina (strain MBIC 11017) GN=mfd PE=4 SV=1
          Length = 1164

 Score =  565 bits (1455), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 301/645 (46%), Positives = 425/645 (65%), Gaps = 20/645 (3%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S KVDP  L+ GD+VVH+  GIG F+  K++    + E  EY+ ++YADG  ++   Q  
Sbjct: 481  SKKVDPNKLQPGDFVVHRNHGIGKFL--KLESLTLNHETREYLVLQYADGTLRVAADQLG 538

Query: 191  KMLYRYCLPNENKKPKALSKLNDTS--VWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRP 248
              L R+    E +      +LN  S   WEK K K + +I+K+ VDL++LY  R +Q   
Sbjct: 539  S-LSRFRNTGEGR-----PQLNKMSGKAWEKTKNKVRKSIKKLAVDLLKLYAQRAQQEGF 592

Query: 249  PYP-KSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALR 307
             +P   P   E    FPY+PT DQ +A  DV++D+ E   PMDRL+CGDVGFGKTEVA R
Sbjct: 593  TFPLDQPWQEEMEDSFPYQPTADQLKAAQDVKRDM-ENPRPMDRLVCGDVGFGKTEVATR 651

Query: 308  AIRCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESI 367
            A+   V+A KQ   LAPT +L +QH+  + ERFA YP I++GLL+RF++  E+++    +
Sbjct: 652  AVFKAVTAGKQVAFLAPTTILTQQHYHTLKERFAPYP-IQIGLLNRFRSAEERKDIQNRL 710

Query: 368  KSGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPI 427
            K+GELDI+VGTH LLG  V + +LGLLV+DEEQRFGV QKEKI T KT VDVLTLSATPI
Sbjct: 711  KTGELDIVVGTHQLLGKSVNFRDLGLLVIDEEQRFGVNQKEKIKTLKTQVDVLTLSATPI 770

Query: 428  PRTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRI 487
            PRTLY+AL+G R+ SLITTPPP R PIKTHLS +  E + SA++ ELDRGGQ+FYV+PR+
Sbjct: 771  PRTLYMALSGVREMSLITTPPPSRRPIKTHLSPYDPESIRSAVRQELDRGGQIFYVVPRV 830

Query: 488  KGLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQN 547
            +G+EEV   L E  P   IAI HG+    +LE TM  F+ G+ +IL+ T I+ESGLDI  
Sbjct: 831  EGIEEVAGKLREMVPSARIAIAHGQMVEGELEATMLTFSNGDAEILVCTTIIESGLDIPR 890

Query: 548  ANTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECREL 607
             NTI+++D Q+FGL+QLYQLRGRVGRA  +A+A+L YP+++ L+++A +RL AL+E  +L
Sbjct: 891  VNTILIEDAQKFGLSQLYQLRGRVGRAGIQAHAWLFYPNQSSLTEKARKRLRALQEFSQL 950

Query: 608  GQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSV 667
            G G+QLA RDM IRG G + G +Q+G +  +G DL+ EML ES++++    +  V     
Sbjct: 951  GSGYQLAVRDMEIRGVGNLLGAEQSGQMEAIGFDLYMEMLDESINEIRGQEIPQV--DEA 1008

Query: 668  QVDININPHLPSEYINHLENPMEIINEAERVAEKDTWS-LMQFTENLRRQYGKEPRPMEV 726
            QVD+N+   +P++YI  L+  M        VA  +T + L Q   +   +YG  P   + 
Sbjct: 1009 QVDLNLTAFIPADYITDLDQKMSAYRA---VASAETKADLTQTAVDWNDRYGPIPDSAQQ 1065

Query: 727  LLKKLYLRRMAADIGINRIYSSGKT-VFMKANITKKVFKMMTDSM 770
            LL+ + L+++A  +G +RI    K  V ++  + +  FK++ +++
Sbjct: 1066 LLRIMELKQLAKSLGFSRIKPEDKQHVMLETPMEEPAFKLLKENL 1110


>E0UIE9_CYAP2 (tr|E0UIE9) Transcription-repair coupling factor OS=Cyanothece sp.
            (strain PCC 7822) GN=Cyan7822_5030 PE=4 SV=1
          Length = 1169

 Score =  564 bits (1454), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 298/646 (46%), Positives = 427/646 (66%), Gaps = 25/646 (3%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S +V+   LR GDYVVH+  GIG FI +++       E  EYV I+YADG  ++P   S 
Sbjct: 496  SKQVNLDKLRPGDYVVHRHHGIGKFIKLEI------LESREYVLIQYADGTLRIP-SDSL 548

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
              L RY        P  L ++   + WE+ K K + +++K+ VDL+ LY  R +Q    +
Sbjct: 549  DSLSRYR--QTGNHPPELHRMAGKA-WEQTKQKVRKSVKKLAVDLINLYAKRAQQEGFSF 605

Query: 251  PK-SPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
            P  SP   E    FPY+PTPDQ +A  +V++DL E + PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 606  PTDSPWQQELEDSFPYQPTPDQLKAVQEVKRDL-ESDRPMDRLVCGDVGFGKTEVAVRAI 664

Query: 310  -RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIK 368
             + V S  KQ   LAPT +L +QH+  + ERFA YP I +GLL+RF+T +E ++ L+ + 
Sbjct: 665  FKAVTSGNKQVAFLAPTTILTQQHYHTLKERFAPYP-INIGLLNRFRTPSENKDILQRLS 723

Query: 369  SGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIP 428
            +GELDI+VGTH LL N++ + +LGLLV+DEEQRFGV QKEKI T KT VDVLTL+ATPIP
Sbjct: 724  TGELDIVVGTHQLLSNKIKFKDLGLLVIDEEQRFGVNQKEKIKTLKTQVDVLTLTATPIP 783

Query: 429  RTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIK 488
            RTLY++L+G R+ SLITTPPP R PIKTHLS ++ + + +AI+ ELDRGGQ+FYV+PR++
Sbjct: 784  RTLYMSLSGVREMSLITTPPPSRRPIKTHLSPYNSDVIRTAIRNELDRGGQIFYVVPRVE 843

Query: 489  GLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNA 548
            G+EEV   + +  P   IAI HG+    +LE TM  F  GE  +L+ T I+ESGLDI   
Sbjct: 844  GIEEVAAEIRQMVPTARIAIAHGQMDVSELETTMLAFNNGEADVLVCTTIIESGLDIPRV 903

Query: 549  NTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELG 608
            NTIIV+D Q+FGL+QLYQLRGRVGR+  +A+A+L+YP K  L++ A +RL AL+E  +LG
Sbjct: 904  NTIIVEDAQKFGLSQLYQLRGRVGRSGIQAHAWLVYPHKAALTETARQRLRALQEFTQLG 963

Query: 609  QGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQ 668
             G+QLA RDM IRG G + G +Q+G +  +G DL+ EML +++ +++   +  V     Q
Sbjct: 964  SGYQLATRDMEIRGVGNLLGAEQSGQMEAIGFDLYMEMLQDAIREIQGQEIPKV--EDTQ 1021

Query: 669  VDININPHLPSEYINHLENPME---IINEAERVAEKDTWSLMQFTENLRRQYGKEPRPME 725
            +D+ +   +P++YI+ +   M+    I  A   A+     L Q   +L  +YG  P P+E
Sbjct: 1022 IDLKLTAFIPADYISDINQKMDAYRTIATANSPAD-----LKQIAADLCDRYGALPSPVE 1076

Query: 726  VLLKKLYLRRMAADIGINRIYSSGKT-VFMKANITKKVFKMMTDSM 770
             LL+ + L+++A  +G +RI   GK  V ++  + +  +K++ +++
Sbjct: 1077 QLLQVIELKQLAKSLGFSRIKPDGKQHVVLETPMEEPAWKLLEENL 1122


>A0YJ76_LYNSP (tr|A0YJ76) Transcription-repair coupling factor OS=Lyngbya sp.
            (strain PCC 8106) GN=L8106_02142 PE=4 SV=1
          Length = 1147

 Score =  564 bits (1453), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 298/653 (45%), Positives = 427/653 (65%), Gaps = 20/653 (3%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S +VDP  LR GDYVVH++ GIG F+ ++     N  E  +Y+ ++Y DG+ ++   Q  
Sbjct: 458  SKQVDPNKLRPGDYVVHRQHGIGKFLKLESLTINN--ETRDYLVVQYGDGLLRVAADQVG 515

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
              L R+   +   K   L+KL+  S WEK K K + AI+K+ VDL++LY  R +Q    Y
Sbjct: 516  -TLSRFR--STGAKVPQLNKLSGKS-WEKTKNKVQKAIKKLAVDLLKLYAQRAQQTGYNY 571

Query: 251  P-KSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
            P  +P   E    FPY+PTPDQ ++  DV++D+ E E PMDRL+CGDVGFGKTEV +RAI
Sbjct: 572  PIDTPWQQELEDSFPYQPTPDQLKSTQDVKRDM-EAERPMDRLVCGDVGFGKTEVGIRAI 630

Query: 310  RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKS 369
               V+A KQ   LAPT +L +QH+  + ERFA YP I++ LL+RF+T +EK E  + + +
Sbjct: 631  FKAVTAGKQVAFLAPTTILTQQHYHTLKERFAPYP-IEIALLNRFRTTSEKREIQQRLTT 689

Query: 370  GELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPR 429
            GE+DIIVGTHS+L   + + +LGLLVVDEEQRFGV QKEKI T KT VDVLTL+ATPIPR
Sbjct: 690  GEIDIIVGTHSILSKTIQFKDLGLLVVDEEQRFGVNQKEKIKTLKTHVDVLTLTATPIPR 749

Query: 430  TLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKG 489
            TLY+AL+G R+ SLITTPPP R PIKTHLS ++ E + +AI+ ELDRGGQVFYV+PRI+G
Sbjct: 750  TLYMALSGIREMSLITTPPPSRRPIKTHLSPYNDETIRTAIRQELDRGGQVFYVVPRIEG 809

Query: 490  LEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNAN 549
            +EE    + E  P   IA+ HG+  + +LE  M  F  GE +IL+ T I+ESGLDI   N
Sbjct: 810  IEEKSSKIREMVPSARIAVAHGQMNAAELESIMLTFNAGEAEILVCTTIIESGLDIPRVN 869

Query: 550  TIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYP----DKNLLSDQALERLSALEECR 605
            TI+++D  +FGLAQLYQLRGRVGR+  +A+A+L YP     +  LSD A +RL A++E  
Sbjct: 870  TILIEDAHRFGLAQLYQLRGRVGRSGVQAHAWLFYPVNADGRAALSDDARKRLRAIQEFT 929

Query: 606  ELGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYH 665
            +LG G+QLA RD+ IRG G I G +Q+G +  +G DL+ EML ES+ +++   +  V   
Sbjct: 930  QLGSGYQLAMRDLEIRGAGDILGAEQSGQMDVIGFDLYTEMLEESIREIKGQEIPQV--D 987

Query: 666  SVQVDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPME 725
              Q+D+N+   +PS+YI  ++  M    E    + +D   L +  E+   +YG  P P +
Sbjct: 988  DTQIDLNLTAFIPSDYIPDIDQKMSAYREVASCSSRD--ELARLEEDWCDRYGPIPTPAQ 1045

Query: 726  VLLKKLYLRRMAADIGINRI---YSSGKTVFMKANITKKVFKMMTDSMTSDIY 775
             L++ + L+++A  +G +RI     S + + ++  + +  + ++ + + S ++
Sbjct: 1046 QLIRVMELKQIAKKLGFSRIKPDTESKQHILLETPMEEPAWNLLKEKLPSHLH 1098


>C7QTV1_CYAP0 (tr|C7QTV1) Transcription-repair coupling factor OS=Cyanothece sp.
            (strain PCC 8802) GN=Cyan8802_4373 PE=4 SV=1
          Length = 1158

 Score =  563 bits (1452), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 298/647 (46%), Positives = 425/647 (65%), Gaps = 19/647 (2%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S +VD   L  GDYV+HK  G+G F+ ++      S    EY+ I+Y DG+ ++P   S 
Sbjct: 482  SKQVDLNQLNPGDYVIHKNHGLGKFLKLE------SLATREYLVIQYEDGLLRVPA-DSF 534

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
              L RY   +    P  L K+    +WEK K + + +I+K+ VDL+ LY  R K+    Y
Sbjct: 535  DSLSRYR--HTGSHPPELHKMTG-KIWEKTKQRVRKSIKKLAVDLLNLYAKRAKKEGFIY 591

Query: 251  P-KSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
            P  +P   E    FPY+PTPDQ +A  DV+ DL E + PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 592  PPDTPWQEELEDSFPYQPTPDQLKAVQDVKMDL-ESDRPMDRLVCGDVGFGKTEVAVRAI 650

Query: 310  -RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIK 368
             + V S  KQ  +LAPT +L +QH+  + ERFA YP I +GLL+RF+T +EK++ ++ + 
Sbjct: 651  FKAVTSGHKQVALLAPTTILTQQHYHTLKERFAPYP-INIGLLNRFRTTSEKKDIVQRLA 709

Query: 369  SGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIP 428
            +GELDI+VGTH LLG  V + NLGLLV+DEEQRFGV QKEKI   KT VDVLTL+ATPIP
Sbjct: 710  TGELDIVVGTHQLLGQSVKFKNLGLLVIDEEQRFGVNQKEKIKALKTEVDVLTLTATPIP 769

Query: 429  RTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIK 488
            RTLY++L+G R+ SLITTPPP R PIKTHLSS++ + V +AI+ ELDRGGQ+FYV+PR++
Sbjct: 770  RTLYMSLSGIREISLITTPPPSRRPIKTHLSSYNPDVVRTAIRNELDRGGQIFYVVPRVE 829

Query: 489  GLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNA 548
            G+EEV   +++  P   I I HG+     LE TM  F  GE  IL+ T I+ESGLDI   
Sbjct: 830  GIEEVAGQIQQMVPSARIVIAHGQMDVNDLEMTMLGFNNGEADILVCTTIIESGLDIPRV 889

Query: 549  NTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELG 608
            NTIIV+D Q+FGL+QLYQLRGRVGR+  +A+A+LLYP+K  LS+ A +RL AL+E  +LG
Sbjct: 890  NTIIVEDAQKFGLSQLYQLRGRVGRSGIQAHAWLLYPNKGQLSETARQRLRALQEFSQLG 949

Query: 609  QGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQ 668
             G+QLA RDM IRG G + G +Q+G +  +G +L+ EML E++ +++   +  V    +Q
Sbjct: 950  SGYQLATRDMEIRGVGNLLGAEQSGQMMAIGFELYMEMLQEAIKEIQGQEIPKV--DEIQ 1007

Query: 669  VDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLL 728
            +D+ +   +PS+YI  L+  M+          K+   L +  ++   +YG  P P+  LL
Sbjct: 1008 IDLQLTAFIPSDYIPDLQQKMDAYRRIAMANSKE--QLEEIVKDWTDRYGTIPSPVRQLL 1065

Query: 729  KKLYLRRMAADIGINRIYSSGK-TVFMKANITKKVFKMMTDSMTSDI 774
            + + L+++   +G +RI   GK  V ++  + +  +K++ +++ + +
Sbjct: 1066 QVIELKQIGKSLGFSRIKVEGKQNVVLETPMEEPAWKLLQENLPNHL 1112


>B7JVA1_CYAP8 (tr|B7JVA1) Transcription-repair coupling factor OS=Cyanothece sp.
            (strain PCC 8801) GN=PCC8801_4312 PE=4 SV=1
          Length = 1158

 Score =  562 bits (1448), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 298/647 (46%), Positives = 424/647 (65%), Gaps = 19/647 (2%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S +VD   L  GDYV+HK  G+G F+ ++      S    EY+ I+Y DG+ ++P   S 
Sbjct: 482  SKQVDLNQLNPGDYVIHKNHGLGKFLKLE------SLATREYLVIQYEDGLLRVPA-DSF 534

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
              L RY   +    P  L K+    +WEK K + + +I+K+ VDL+ LY  R K+    Y
Sbjct: 535  DSLSRYR--HTGSHPPELHKMTG-KIWEKTKQRVRKSIKKLAVDLLNLYAKRAKKEGFIY 591

Query: 251  P-KSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
            P  +P   E    FPY+PTPDQ +A  DV+ DL E + PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 592  PPDTPWQEELEDSFPYQPTPDQLKAVQDVKMDL-ESDRPMDRLVCGDVGFGKTEVAVRAI 650

Query: 310  -RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIK 368
             + V S  KQ  +LAPT +L +QH+  + ERFA YP I +GLL+RF+T +EK++ ++ + 
Sbjct: 651  FKAVTSGHKQVALLAPTTILTQQHYHTLKERFAPYP-INIGLLNRFRTTSEKKDIVQRLA 709

Query: 369  SGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIP 428
            +GELDI+VGTH LLG  V + NLGLLV+DEEQRFGV QKEKI   KT VDVLTL+ATPIP
Sbjct: 710  TGELDIVVGTHQLLGQSVKFKNLGLLVIDEEQRFGVNQKEKIKVLKTEVDVLTLTATPIP 769

Query: 429  RTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIK 488
            RTLY++L+G R+ SLITTPPP R PIKTHLSS++ + V +AI+ ELDRGGQ+FYV+PR++
Sbjct: 770  RTLYMSLSGIREISLITTPPPSRRPIKTHLSSYNPDVVRTAIRNELDRGGQIFYVVPRVE 829

Query: 489  GLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNA 548
            G+EEV   +++  P   I I HG+     LE TM  F  GE  IL+ T I+ESGLDI   
Sbjct: 830  GIEEVAGQIQQMVPSARIVIAHGQMDVNDLEMTMLGFNNGEADILVCTTIIESGLDIPRV 889

Query: 549  NTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELG 608
            NTIIV+D Q+FGL+QLYQLRGRVGR+  +A+A+LLYP+K  LS+ A +RL AL+E  +LG
Sbjct: 890  NTIIVEDAQKFGLSQLYQLRGRVGRSGIQAHAWLLYPNKGQLSETARQRLRALQEFSQLG 949

Query: 609  QGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQ 668
             G+QLA RDM IRG G + G +Q+G +  +G +L+ EML E++ +++   +  V     Q
Sbjct: 950  SGYQLATRDMEIRGVGNLLGAEQSGQMMAIGFELYMEMLQEAIKEIQGQEIPKV--DETQ 1007

Query: 669  VDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLL 728
            +D+ +   +PS+YI  L+  M+          K+   L +  ++   +YG  P P+  LL
Sbjct: 1008 IDLQLTAFIPSDYIPDLQQKMDAYRRIAMANSKE--QLEEIVKDWTDRYGTIPSPVRQLL 1065

Query: 729  KKLYLRRMAADIGINRIYSSGK-TVFMKANITKKVFKMMTDSMTSDI 774
            + + L+++   +G +RI   GK  V ++  + +  +K++ +++ + +
Sbjct: 1066 QVIELKQIGKSLGFSRIKVEGKQNVVLETPMEEPAWKLLQENLPNHL 1112


>K9SA68_9CYAN (tr|K9SA68) Transcription-repair coupling factor (Precursor)
            OS=Geitlerinema sp. PCC 7407 GN=GEI7407_3052 PE=4 SV=1
          Length = 1159

 Score =  562 bits (1448), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 294/647 (45%), Positives = 423/647 (65%), Gaps = 14/647 (2%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S +VDP  L+ GDYVVH+  GIG F+  K++    + E  EY+ ++YADG+ ++   Q  
Sbjct: 481  SKQVDPNKLQPGDYVVHRNHGIGRFL--KLESLTVNGETREYLVLQYADGLLRVAADQVG 538

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
              L R+       KP+ L+K+   + WE+ K+K + A++K+ VDL++LY  R +Q+   +
Sbjct: 539  S-LSRFRATG-GGKPE-LNKMTGKA-WERTKSKVRKAVKKVAVDLLQLYAQRAQQQGFSF 594

Query: 251  P-KSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
            P   P   E    FPY+PTPDQ +A  DV++D+ E + PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 595  PLDMPWQEEMEDSFPYQPTPDQLKATQDVKRDM-ESDRPMDRLVCGDVGFGKTEVAIRAI 653

Query: 310  RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKS 369
               V+A KQ   LAPT +L +QH+  + ERFA YP I++GLL+RF+T  E+ +  + + +
Sbjct: 654  FKAVTAGKQVAFLAPTTILTQQHYHTLKERFAPYP-IQIGLLNRFRTAQERRDIQQRLAT 712

Query: 370  GELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPR 429
            GELDI+VGTH LLG  V +  LGLLV+DEEQRFGV QKEKI + KT VDVLTLSATPIPR
Sbjct: 713  GELDIVVGTHQLLGKGVQFKELGLLVIDEEQRFGVNQKEKIKSLKTQVDVLTLSATPIPR 772

Query: 430  TLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKG 489
            TLY+AL+G R+ SLITTPPP R PIKTHL+    E V +AI  E+DRGGQVFYV+PR+ G
Sbjct: 773  TLYMALSGVREMSLITTPPPSRRPIKTHLAPLDMETVRTAICQEIDRGGQVFYVVPRVDG 832

Query: 490  LEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNAN 549
            +EE+   L E  P   IAI HG+    +LE TM  F+ GE +IL+ T I+ESGLDI   N
Sbjct: 833  IEELAGRLREMVPSARIAIAHGQMQEGELEATMLTFSNGEAEILVCTTIIESGLDIPRVN 892

Query: 550  TIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQ 609
            TI+++D Q+FGL+QLYQLRGRVGRA  +A+A++ YP ++ LS+ A +RL A++E  +LG 
Sbjct: 893  TILIEDAQRFGLSQLYQLRGRVGRAGIQAHAWMFYPQQSQLSEDARKRLRAIQEFTQLGS 952

Query: 610  GFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQV 669
            G+QLA RDM IRG G + G +Q+G +  +G DL+ EML E++ ++    +  V     Q+
Sbjct: 953  GYQLAVRDMEIRGVGNLLGAEQSGQMDAIGFDLYMEMLEEAIREIRGQEIPQV--DDTQI 1010

Query: 670  DININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLLK 729
            D+N+   +P++YI  L+  M          ++    L Q   +   +YG  P   + LL+
Sbjct: 1011 DLNLTAFIPADYIPDLDQKMSAYRAVATAGDRH--ELTQIAADWSDRYGPMPHATQQLLR 1068

Query: 730  KLYLRRMAADIGINRIYSSG-KTVFMKANITKKVFKMMTDSMTSDIY 775
             + L+++A  +G  RI   G + V ++  + +  + ++  ++ S ++
Sbjct: 1069 VMTLKQIAKKLGFTRIKPEGTQHVVLETPMEEPAWNLLRGNLPSHLH 1115


>L8LAU9_9CYAN (tr|L8LAU9) Transcription-repair coupling factor Mfd (Precursor)
            OS=Leptolyngbya sp. PCC 6406 GN=Lep6406DRAFT_00021200
            PE=4 SV=1
          Length = 1195

 Score =  562 bits (1448), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 295/646 (45%), Positives = 423/646 (65%), Gaps = 14/646 (2%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S +VDP  ++ GD+VVH+  GIG F+  K++      E  EY+ I+YADG+ ++   Q S
Sbjct: 516  SKQVDPNKMKPGDFVVHRNHGIGRFL--KLESLTVDRETREYLVIQYADGLLRVAADQVS 573

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
              L RY   +  ++   L+K++  + WEK K + + A+QK+ VDL++LY  R K +   Y
Sbjct: 574  T-LSRYR--STTERAPELNKMSGKA-WEKTKGRARKAVQKVAVDLLKLYAQRAKLQGFTY 629

Query: 251  PKS-PAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
            P   P   E    FPY+PTPDQ +A  DV++D+ E + PMDRL+CGDVGFGKTEVA+R+I
Sbjct: 630  PADMPWQQELEDSFPYQPTPDQLKAVQDVKRDM-ESDRPMDRLVCGDVGFGKTEVAVRSI 688

Query: 310  RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKS 369
               ++A KQ  +LAPT +L +QH+  + ERFA YP I++GLL+RF++  EK++ L+ +K+
Sbjct: 689  FKAITAHKQVALLAPTTILTQQHYHTLKERFAPYP-IQIGLLNRFRSAEEKKDILQRLKT 747

Query: 370  GELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPR 429
            GELD++VGTH LLG  V + +LGLLVVDEEQRFGV QKEKI   K  VDVLTLSATPIPR
Sbjct: 748  GELDVVVGTHQLLGKGVQFQDLGLLVVDEEQRFGVNQKEKIKALKAEVDVLTLSATPIPR 807

Query: 430  TLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKG 489
            TLY+AL+G R+ SLITTPPP R  IKTHLS +  E + SAI+ ELDRGGQ+FYV+PR++G
Sbjct: 808  TLYMALSGVREMSLITTPPPSRRAIKTHLSPYDPEAIRSAIRQELDRGGQIFYVVPRVEG 867

Query: 490  LEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNAN 549
            +EE+   L E      I + HG+    +LE TM  F+ GE  IL+ T I+ESGLDI   N
Sbjct: 868  IEEISGRLREWVIGARIMVAHGQMQEGELESTMLTFSSGEADILVCTTIIESGLDIPRVN 927

Query: 550  TIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQ 609
            TI+++D  +FGL+QLYQLRGRVGR+  +A+A+L YP +  L+ QA +RL A++E  +LG 
Sbjct: 928  TILIEDAHRFGLSQLYQLRGRVGRSGIQAHAWLFYPRQQSLTPQARQRLRAIQEFAQLGS 987

Query: 610  GFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQV 669
            G+QLA RDM IRG G + G +Q+G +  VG DL+ +ML E ++ +    +  V   + Q+
Sbjct: 988  GYQLAMRDMEIRGVGNLLGMEQSGQMDAVGFDLYMDMLEEEIADIRGQEIPKV--DNTQM 1045

Query: 670  DININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLLK 729
            D+ +   +P++YI+ +E  M +         K    L Q   +L  +YG  P   E LL+
Sbjct: 1046 DLKVTAFIPNDYISDVEQKMSVYRALGTANSKR--ELTQIAADLNDRYGPIPYATEQLLR 1103

Query: 730  KLYLRRMAADIGINRIYSSGKT-VFMKANITKKVFKMMTDSMTSDI 774
             L L+++A  +G  RI   GK  + ++  + +  +K + D++ S +
Sbjct: 1104 VLELKQIAKQLGFARIKPEGKQHIILETPMEEPAWKRLQDNIPSHL 1149


>K9XEM4_9CHRO (tr|K9XEM4) Transcription-repair coupling factor OS=Gloeocapsa sp.
            PCC 7428 GN=Glo7428_1979 PE=4 SV=1
          Length = 1195

 Score =  561 bits (1447), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 296/621 (47%), Positives = 405/621 (65%), Gaps = 13/621 (2%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S +VD   LR GDYVVH+  G+G F+ ++     N  E  EY+ I+YADG+ ++   Q  
Sbjct: 517  SKQVDLNKLRPGDYVVHRNHGVGKFLKLESLTLNN--ETREYIVIQYADGLLRVAADQLG 574

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
              L R+    E+  P  L+K++  + W   K + + AI+K+ VDL++LY  R +Q+   Y
Sbjct: 575  S-LSRFRSTTES--PPELNKMSGKA-WANTKNRVRKAIKKLAVDLLKLYAARSQQQGLAY 630

Query: 251  P-KSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
            P   P   E    FPY+PT DQ +A  DV++D+ E + PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 631  PPDQPWQEELEDSFPYQPTTDQLKAVQDVKRDM-ESDRPMDRLVCGDVGFGKTEVAIRAI 689

Query: 310  RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKS 369
               V+A KQ  +LAPT +L +QH+  + ERFA YP I+VGLL+RF+T  E+ +    + +
Sbjct: 690  FKAVTAGKQVALLAPTTILTQQHYHTLKERFAPYP-IQVGLLNRFRTAEERRDIQRRLTT 748

Query: 370  GELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPR 429
            GELD++VGTH LLG  V + +LGLLVVDEEQRFGV QKEKI + KT VDVLTLSATPIPR
Sbjct: 749  GELDVVVGTHQLLGKGVNFRDLGLLVVDEEQRFGVNQKEKIKSLKTQVDVLTLSATPIPR 808

Query: 430  TLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKG 489
            TLY++L+G R+ SLITTPPP R PIKTHL+ +  E V SAI+ ELDRGGQVFYV+PR+ G
Sbjct: 809  TLYMSLSGIREMSLITTPPPTRRPIKTHLAPYDSESVRSAIRQELDRGGQVFYVVPRVDG 868

Query: 490  LEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNAN 549
            +EE    L E  P   IAI HG+    +LE TM  F+ GE  IL+ T I+ESGLDI   N
Sbjct: 869  IEETAANLREMIPGGRIAIAHGQMDEGELESTMLTFSNGEADILVCTTIIESGLDIPRVN 928

Query: 550  TIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQ 609
            TI+++D  +FGL+QLYQLRGRVGRA  +A+A+L YP +  LSD A +RL A++E  +LG 
Sbjct: 929  TILIEDAHRFGLSQLYQLRGRVGRAGIQAHAWLFYPKQRALSDAARQRLRAIQEFTQLGS 988

Query: 610  GFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQV 669
            G+QLA RDM IRG G + G +Q+G +  +G DL+ EML E++ ++    + +V     Q+
Sbjct: 989  GYQLAMRDMEIRGVGNLLGAEQSGQMDAIGFDLYMEMLEEAIREIRGQEIPSV--DDTQI 1046

Query: 670  DININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLLK 729
            D+N+   +P++YI  ++  M         A K    L+Q       +YG  P     LL+
Sbjct: 1047 DLNLTAFIPADYITDMDQKMSAYRAV--AAAKTKEELVQIAAEWSDRYGTIPSGANQLLR 1104

Query: 730  KLYLRRMAADIGINRIYSSGK 750
             + L+++A  +G +RI   GK
Sbjct: 1105 VMELKQIAKSLGFSRIKPEGK 1125


>Q4C6S8_CROWT (tr|Q4C6S8) Transcription-repair coupling factor OS=Crocosphaera
            watsonii WH 8501 GN=CwatDRAFT_4970 PE=4 SV=1
          Length = 1160

 Score =  561 bits (1447), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 306/644 (47%), Positives = 425/644 (65%), Gaps = 21/644 (3%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQ-S 189
            S KVD   L  GDYVVHK  GIG F+ ++      S    EY+ ++Y DG+ ++P     
Sbjct: 485  SKKVDLQQLHQGDYVVHKSHGIGKFLKLE------SLATREYLVVQYEDGILRIPADSFD 538

Query: 190  SKMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPP 249
            S   YR+    E+K PK L K+   + W+K K K +  I+K+ VDL+ LY  R K     
Sbjct: 539  SVSRYRHT---ESKPPK-LHKMTGKT-WQKSKQKVRKNIRKLAVDLINLYAKRAKNIGFT 593

Query: 250  YP-KSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRA 308
            YP  +P   E    FPY+PTPDQ +A  +V+ DL E + PMDRL+CGDVGFGKTEVA+RA
Sbjct: 594  YPLDTPWQQELEDSFPYQPTPDQLKAIQEVKIDL-ESDRPMDRLVCGDVGFGKTEVAVRA 652

Query: 309  I-RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESI 367
            I + V S  KQ + LAPT +L +QH+  + ERFA YP I +GLL+RF+T +EK+E ++ +
Sbjct: 653  IFKAVTSGHKQVVFLAPTTILTQQHYHTLKERFAPYP-INIGLLNRFRTASEKKEIIQRL 711

Query: 368  KSGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPI 427
             +GELDI+VGT  LLG  V +++LGLLV+DEEQRFGV QKEKI   K+ +DVLTLSATPI
Sbjct: 712  STGELDIVVGTQQLLGKSVKFNDLGLLVIDEEQRFGVNQKEKIKDMKSHIDVLTLSATPI 771

Query: 428  PRTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRI 487
            PRTLY++L+G R+ SLITTPPP R PIKTHLS ++ + V +AI+ ELDRGGQVFYV+PR+
Sbjct: 772  PRTLYMSLSGIREMSLITTPPPSRRPIKTHLSRYNPDAVRNAIRNELDRGGQVFYVVPRV 831

Query: 488  KGLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQN 547
            +G+EEV   ++   P   +AIGHG+    +LE TM  F  G+  IL+ T IVESGLDI  
Sbjct: 832  EGIEEVAAQIKRMVPSARMAIGHGQMDVNELEMTMLGFNNGDADILVCTTIVESGLDIPR 891

Query: 548  ANTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECREL 607
             NTIIV+D Q+FGLAQLYQLRGRVGRA  +A+A+LLYP K+ L++ A +RL AL+E  +L
Sbjct: 892  VNTIIVEDAQKFGLAQLYQLRGRVGRAGIQAHAWLLYPSKSELTETARKRLRALQEFSQL 951

Query: 608  GQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSV 667
            G G+QLA RDM IRG G + G +Q+G + ++G +L+ EML ES+ +++   +  V     
Sbjct: 952  GSGYQLATRDMEIRGVGNLLGAEQSGQMESIGFELYMEMLQESIREIQGQEIPKV--EDT 1009

Query: 668  QVDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVL 727
            QVD+ +   +P++YI  +E  M     A  VA      L Q       +YGK P P++ L
Sbjct: 1010 QVDLQLTAFIPTDYIPDMEQKMSAYR-AIAVANSQK-ELSQIAAEWSDRYGKLPVPVQQL 1067

Query: 728  LKKLYLRRMAADIGINRIYSSGKT-VFMKANITKKVFKMMTDSM 770
            L+ + L+++A  +G +RI   GK  + ++  + +  +K++ + +
Sbjct: 1068 LQVIELKQLAKSLGFSRIKPEGKQHIVLETPMEEPAWKLLQEKI 1111


>A3IN91_9CHRO (tr|A3IN91) Transcription-repair coupling factor OS=Cyanothece sp.
            CCY0110 GN=CY0110_00380 PE=4 SV=1
          Length = 1160

 Score =  561 bits (1447), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 302/647 (46%), Positives = 421/647 (65%), Gaps = 19/647 (2%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S KVD   L  GDYVVHK  GIG F+ ++      S    EY+ ++YADG+ ++P   S 
Sbjct: 485  SKKVDLQQLHPGDYVVHKSHGIGKFLKLE------SLATREYLVVQYADGILRIPA-DSF 537

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
              L RY   +    P  L K+    +W+K K + +  I+K+ VDL+ LY  R K     Y
Sbjct: 538  DSLSRY--RHTGSTPPQLHKMTG-KMWQKSKQRVRKNIKKLAVDLINLYAKRAKNVGFTY 594

Query: 251  P-KSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
            P  +P   E    FPY+PTPDQ +A  DV+ DL E + PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 595  PLDTPWQQELEDSFPYQPTPDQLKAIQDVKIDL-ESDRPMDRLVCGDVGFGKTEVAVRAI 653

Query: 310  -RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIK 368
             + V S  KQ   LAPT +L +QH+  + ERFA YP I +GLL+RF+T +EK+E ++ + 
Sbjct: 654  FKAVTSGHKQVAFLAPTTILTQQHYHTLKERFAPYP-INIGLLNRFRTNSEKKEIIDRLA 712

Query: 369  SGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIP 428
            +GELDI+VGT  LLG  + + +LGLLVVDEEQRFGV QKEKI   K+ VDVLTL+ATPIP
Sbjct: 713  TGELDIVVGTQQLLGKSIKFKDLGLLVVDEEQRFGVNQKEKIKDMKSHVDVLTLTATPIP 772

Query: 429  RTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIK 488
            RTLY++L+G R+ SLITTPPP R PIKTHLS ++ + V +AI+ ELDRGGQVFYV+PR++
Sbjct: 773  RTLYMSLSGIREMSLITTPPPSRRPIKTHLSRYNPDVVRTAIRNELDRGGQVFYVVPRVE 832

Query: 489  GLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNA 548
            G+EEV   L++  P   IAIGHG+     LE TM  F  G+  IL+ T IVESGLDI   
Sbjct: 833  GIEEVAAELKKMVPSARIAIGHGQMNVNDLEMTMLSFNNGDADILVCTTIVESGLDIPRV 892

Query: 549  NTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELG 608
            NTII++D Q+FGLAQLYQLRGRVGRA  +A+A+LLYP K  L++ A +RL AL+E  +LG
Sbjct: 893  NTIIIEDAQKFGLAQLYQLRGRVGRAGIQAHAWLLYPSKAQLTETARKRLRALQEFSQLG 952

Query: 609  QGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQ 668
             G+QLA RDM IRG G + G +Q+G + ++G +L+ +ML E++ +++   +  V     Q
Sbjct: 953  SGYQLATRDMEIRGVGNLLGAEQSGQMESIGFELYMDMLQEAIKEIQGQEIPKV--EDTQ 1010

Query: 669  VDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLL 728
            VD+ +   +P++YI  +E  M           K    L Q       +YGK P P++ LL
Sbjct: 1011 VDLQLTAFIPTDYIPDMEQKMSAYRAIAVANSKK--ELAQIAAEWNDRYGKLPIPVQQLL 1068

Query: 729  KKLYLRRMAADIGINRIYSSGK-TVFMKANITKKVFKMMTDSMTSDI 774
            + + L+++A  +G +RI   GK  + ++  + +  +K++ +++ + +
Sbjct: 1069 QVIELKQLAKSLGFSRIKPEGKQNIVLETPMEEPAWKLLEENLPAHL 1115


>K9PYZ4_9CYAN (tr|K9PYZ4) Transcription-repair coupling factor OS=Leptolyngbya sp.
            PCC 7376 GN=Lepto7376_1360 PE=4 SV=1
          Length = 1160

 Score =  561 bits (1447), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 300/651 (46%), Positives = 426/651 (65%), Gaps = 25/651 (3%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S  VD   LR GDYVVHK  G+G F+  KM+V ++     EY+ I+YADG+ ++P   S 
Sbjct: 485  SKTVDVNKLRPGDYVVHKSHGVGRFL--KMEVLQSR----EYLAIKYADGLLRIPA-DSL 537

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
              L RY       +P+ L KL   + WEK K K + +++K+ VDL+++Y  R + +   Y
Sbjct: 538  DTLSRY-RKTAKGRPQ-LHKLGGKA-WEKTKNKVRKSVKKLAVDLLKIYAQRAEMKGTIY 594

Query: 251  P-KSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
            P  +P   E    FPY+ TPDQ +A  D+++DL E + PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 595  PVDAPWQQEMEDSFPYQATPDQLKAVQDIKRDL-ESDRPMDRLVCGDVGFGKTEVAIRAI 653

Query: 310  -RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIK 368
             + V S  KQ  +LAPT +L +QH+  + ERF+ YP I +GLL+RF+T +E++E ++ +K
Sbjct: 654  FKVVTSGHKQVALLAPTTILTQQHYHTLKERFSPYP-INIGLLNRFRTASEQKEIMQRLK 712

Query: 369  SGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIP 428
            +GELDI+VGT  LLG  V + +LG+LVVDEEQRFGV QKEKI   KT VDVLTLSATPIP
Sbjct: 713  NGELDIVVGTQKLLGKEVKFKDLGMLVVDEEQRFGVNQKEKIKAMKTKVDVLTLSATPIP 772

Query: 429  RTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIK 488
            RTLY++L+G R+ SLITTPPP R PI+TH+S +  E + +A++ ELDRGGQ+FYV+PR++
Sbjct: 773  RTLYMSLSGIREMSLITTPPPSRRPIQTHVSRYQSEAIRTALRNELDRGGQIFYVVPRVE 832

Query: 489  GLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNA 548
            G+EE+   L E  P   +AI HG+     LE TM  F+ GE  IL+ T IVESGLDI   
Sbjct: 833  GIEEIAGQLREMIPSARVAIAHGQMNESDLEATMLTFSNGEADILLCTTIVESGLDIPRV 892

Query: 549  NTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELG 608
            NTIIV+D Q+FGL+QLYQLRGRVGR+  +A+A+LLYP K  L+++A +RL AL+E  +LG
Sbjct: 893  NTIIVEDSQKFGLSQLYQLRGRVGRSGIQAHAWLLYPSKGELTEKARKRLRALQEFSQLG 952

Query: 609  QGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQ 668
             G+QLA RDM IRG G + G +Q+G +  +G DL+ +ML E +S++    +  V     Q
Sbjct: 953  SGYQLAMRDMEIRGVGNLLGAEQSGQMEAIGFDLYMDMLQECISEIRGQEIPQV--DDCQ 1010

Query: 669  VDININPHLPSEYINHLENPME---IINEAERVAEKDTWSLMQFTENLRRQYGKEPRPME 725
            VD+ +   +P  YI   E  ++   +I  A    E+     MQ       +YGK P  +E
Sbjct: 1011 VDLKLTAFIPGNYITDTEQKLDAYRLITNANSKPER-----MQIASEWTERYGKLPSSVE 1065

Query: 726  VLLKKLYLRRMAADIGINRIYSSGK-TVFMKANITKKVFKMMTDSMTSDIY 775
             LL+ + L+ +A  +G +RI   GK  + ++  + +  +K++ + +   ++
Sbjct: 1066 QLLQVIELKSIAKSLGFSRIKPEGKQNILLETPMEEPAWKLLEEKLPKHLH 1116


>K9YE83_HALP7 (tr|K9YE83) Transcription-repair coupling factor OS=Halothece sp.
            (strain PCC 7418) GN=PCC7418_2657 PE=4 SV=1
          Length = 1164

 Score =  561 bits (1445), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 297/646 (45%), Positives = 424/646 (65%), Gaps = 18/646 (2%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S +VD   LR GDYVVH++ G+G F+ ++      S E  EY+ +EYADG+ ++P   S 
Sbjct: 489  SKQVDLNKLRPGDYVVHRQHGVGKFLKLE------SWETREYLVVEYADGLLRVPAD-SL 541

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
            + L RY    E K    L+K++  + W+  K K + A++K+ +DL+ LY  R +     Y
Sbjct: 542  ESLSRYRHLGEGKP--QLNKMSGKA-WQNTKNKVEKAVKKVAIDLLNLYAQRSQLSGYAY 598

Query: 251  PK-SPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
            P+ +P   E    FPY+ TPDQ +A  DV++DL E E PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 599  PEDTPWQQELEDSFPYQATPDQLKAVQDVKRDL-ESELPMDRLVCGDVGFGKTEVAIRAI 657

Query: 310  RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKS 369
              ++ + KQ   LAPT +L +QH+  + ERFA YP I +GLL+RF+T  E+++ L+ + +
Sbjct: 658  FKILMSGKQVAFLAPTTILTQQHYHTLKERFAPYP-INIGLLNRFRTANERKDILKRLST 716

Query: 370  GELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPR 429
            GELD++VGTH LL   V Y +LG+LVVDEEQRFGV QKEKI + KT VDVLTL+ATPIPR
Sbjct: 717  GELDVVVGTHQLLNKSVKYKDLGMLVVDEEQRFGVNQKEKIKSMKTEVDVLTLTATPIPR 776

Query: 430  TLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKG 489
            TLY++L+G R+ SLITTPPP R PIKTHLS +  E + +AI+ ELDRGGQVFYV+PR++G
Sbjct: 777  TLYMSLSGIREMSLITTPPPSRRPIKTHLSPYDGEAIRTAIRNELDRGGQVFYVVPRVEG 836

Query: 490  LEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNAN 549
            +EE    L E  P   IAI HG+    +LE TM  F  G+  IL+ T I+ESGLDI   N
Sbjct: 837  IEETAGKLREMVPGARIAIAHGQMEEAELESTMLTFNNGDADILVCTTIIESGLDIPRVN 896

Query: 550  TIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQ 609
            TI+V+D Q+FGL+QLYQLRGRVGR+  +A+A+LLYP ++ LSD A +RL AL+E  +LG 
Sbjct: 897  TIVVEDSQKFGLSQLYQLRGRVGRSGIQAHAWLLYPKQSSLSDTAKKRLRALQEFTQLGS 956

Query: 610  GFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQV 669
            G+QLA RD+ IRG G + G +Q+G +  VG DL+  ML E++ +V+   +  V     Q+
Sbjct: 957  GYQLAMRDLEIRGVGELLGAKQSGQMNAVGFDLYMSMLQEAIQEVQGQDIPQV--DDTQI 1014

Query: 670  DININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLLK 729
            D+ +   +P+ YI  ++  M+        + K    L Q  ++ R +YG+ P P++ LL+
Sbjct: 1015 DLKLTAFVPNHYITDMDQKMDAYRTVTMASSKK--ELDQIRQDWRDRYGELPAPVQQLLQ 1072

Query: 730  KLYLRRMAADIGINRIYSSGKT-VFMKANITKKVFKMMTDSMTSDI 774
             + L+++   +G +RI   GK  V ++  + +  +K + + +   I
Sbjct: 1073 VMELKQITKSLGFSRIKPEGKQHVALETPMEEPAWKRLQEHLPKHI 1118


>K9RQ24_SYNP3 (tr|K9RQ24) Transcription-repair coupling factor Mfd OS=Synechococcus
            sp. (strain ATCC 27167 / PCC 6312) GN=Syn6312_0405 PE=4
            SV=1
          Length = 1154

 Score =  560 bits (1443), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 297/646 (45%), Positives = 423/646 (65%), Gaps = 14/646 (2%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S +VD   L+ GDYVVH++ GIG F+  K++    S E  EY+ I+YADG+ ++   Q +
Sbjct: 474  SKQVDVNKLQPGDYVVHRQHGIGRFL--KLEPLSISHETREYLVIQYADGVLRIAADQFN 531

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
             +     L      P  L+KL+  + WEK K K + AI+K+ VDL++LY  R +Q+   Y
Sbjct: 532  TL---SRLRTGQDTPPQLNKLSGQA-WEKTKQKVRKAIKKVAVDLLQLYAQRAQQQGFRY 587

Query: 251  P-KSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
            P   P   E    FPY+PTPDQ +A  DV++D+ E + PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 588  PPDQPWQVEMEDSFPYQPTPDQLKATQDVKQDM-ESDRPMDRLVCGDVGFGKTEVAIRAI 646

Query: 310  RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKS 369
               ++A KQ  VLAPT +L +QH+  + ERFA YP I VGLL+RF+T  E++  L+ + +
Sbjct: 647  FKAITAGKQVAVLAPTTILTQQHYHTLKERFAPYP-IHVGLLNRFRTGEERKNILQRLVT 705

Query: 370  GELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPR 429
            GELD++VGTH LLG  V + +LGLLV+DEEQRFGV QKEKI + KT +DVLTLSATPIPR
Sbjct: 706  GELDVVVGTHQLLGKGVNFRDLGLLVIDEEQRFGVNQKEKIKSLKTQLDVLTLSATPIPR 765

Query: 430  TLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKG 489
            TLY+AL+G R+ S+ITTPPP R PI+THLS +  E + SAI+ ELDRGGQVFYV+PR+ G
Sbjct: 766  TLYMALSGVREMSVITTPPPSRRPIQTHLSPYDLEAIRSAIRQELDRGGQVFYVVPRVAG 825

Query: 490  LEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNAN 549
            +EEV   L+   P   I + HG+    +LE TM  F   E +IL+ T I+ESGLDI   N
Sbjct: 826  IEEVAGKLQMMVPGARILVAHGQMQEGELESTMLGFFNAEAEILVCTTIIESGLDIPRVN 885

Query: 550  TIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQ 609
            TI+V+D  +FGLAQLYQLRGRVGRA  +A+A+L YP +  L+++A  RL A++E  +LG 
Sbjct: 886  TILVEDAHKFGLAQLYQLRGRVGRAGIQAHAWLFYPRQESLTEEARARLRAIQEFTQLGS 945

Query: 610  GFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQV 669
            G+QLA RDM IRG G + G +Q G +  +G DL+ EML E+++++    +  V     Q+
Sbjct: 946  GYQLAMRDMEIRGVGNLLGAEQHGQMDAIGFDLYVEMLEEAIAEIRGQEIPTV--EDTQI 1003

Query: 670  DININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLLK 729
            D+++   +P++YI  +E  M         A +D  +L Q   +L  +YG  P P+  L++
Sbjct: 1004 DLSVTAFIPADYIPDMEQKMSTYRAIS--ASQDGLALKQVLLDLTDRYGVPPAPVLQLIR 1061

Query: 730  KLYLRRMAADIGINRIYSSGKT-VFMKANITKKVFKMMTDSMTSDI 774
             + L++MA  +G +RI    K  V ++  + +  + ++  ++ + +
Sbjct: 1062 VVELKQMAKKLGFSRIRPESKQHVILETPMAEPAWNVLASNLPTHL 1107


>Q2JM65_SYNJB (tr|Q2JM65) Transcription-repair coupling factor OS=Synechococcus sp.
            (strain JA-2-3B'a(2-13)) GN=mfd PE=4 SV=1
          Length = 1158

 Score =  560 bits (1442), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 296/645 (45%), Positives = 421/645 (65%), Gaps = 13/645 (2%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S +VDP  L+ GD+VVHK  GIG F+  +++      E  EY+ I+Y+DG+ ++   Q +
Sbjct: 476  SRQVDPNLLKPGDFVVHKAHGIGQFL--RLETLTIGGETREYLVIQYSDGLLRVAADQVN 533

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
              L RY    +   P AL K++  S WEK K K K +++K+  DL++LY  R +Q    +
Sbjct: 534  S-LSRYRASGDG--PPALHKMSG-STWEKTKQKVKKSLRKVAFDLLQLYAKRAEQEGYAF 589

Query: 251  P-KSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
            P  SP   E    FPY  TPDQ +A  ++++D+ E   PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 590  PPDSPWQQELEDSFPYPLTPDQLRAVQEIKRDM-ESPRPMDRLLCGDVGFGKTEVAIRAI 648

Query: 310  RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKS 369
               V+A KQ  +LAPT +L +QH+  + ERFA YP I+VGLL+RF+T  EK+E L  +KS
Sbjct: 649  FKAVTAGKQVALLAPTTILTQQHYHTLKERFAPYP-IQVGLLNRFRTSEEKKEILSRLKS 707

Query: 370  GELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPR 429
            GELD++VGTH LLG  V + +LGLLV+DEEQRFGV QKEKI   KT VDVLTL+ATPIPR
Sbjct: 708  GELDVVVGTHQLLGKDVQFRDLGLLVIDEEQRFGVNQKEKIKLLKTQVDVLTLTATPIPR 767

Query: 430  TLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKG 489
            TLY+AL+G R+ SLI TPPP R PIKT+LS ++ E + +AI+ ELDRGGQVFYV+ RI+G
Sbjct: 768  TLYMALSGLREMSLIQTPPPSRRPIKTYLSPYNPEVIRTAIRQELDRGGQVFYVVNRIEG 827

Query: 490  LEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNAN 549
            +EE    L E  P   IAI HG+    +LE TM  F  GEI IL+ T I+ESGLDI   N
Sbjct: 828  IEEASAKLREWVPGARIAIAHGQMPEGELEATMLAFNNGEIDILVCTTIIESGLDIPRVN 887

Query: 550  TIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQ 609
            TI++++ Q+FGLAQLYQLRGRVGRA  +A+A+L Y +  +L+++A +RL A++E  +LG 
Sbjct: 888  TILIENAQEFGLAQLYQLRGRVGRAGIQAHAWLFYREDGILTEEARKRLQAIQEFTQLGS 947

Query: 610  GFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQV 669
            G+QLA RDM IRG G + G +Q+G V  VG DL+ EML E++ ++    +  V     Q+
Sbjct: 948  GYQLAMRDMEIRGIGNLLGTEQSGQVNAVGFDLYLEMLQEAIREIRGQEIPQV--EDTQI 1005

Query: 670  DININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLLK 729
            D+N+   +P  YI   +  M+        A      L+Q  +  + ++G  P+P + LL+
Sbjct: 1006 DLNVTAMIPQSYIPDEDQKMQAYRHL--AAAGSRVELLQIAQEWQDRFGPLPKPTQELLR 1063

Query: 730  KLYLRRMAADIGINRIYSSGKTVFMKANITKKVFKMMTDSMTSDI 774
             + L+ +A  +G +RI  + + V ++  + +  +  + +++ + +
Sbjct: 1064 VMELKILARTLGFSRIKPAKEHVLLETPMEEPAWNRLKEALPTHL 1108


>K9QZF8_NOSS7 (tr|K9QZF8) Transcription-repair coupling factor Mfd OS=Nostoc sp.
            (strain ATCC 29411 / PCC 7524) GN=Nos7524_4721 PE=4 SV=1
          Length = 1195

 Score =  560 bits (1442), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 293/621 (47%), Positives = 403/621 (64%), Gaps = 13/621 (2%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S +VDP  LR GDYVVHK  GIG F+  K++    + E  +Y+ ++YADG+ ++   Q  
Sbjct: 517  SKQVDPNKLRPGDYVVHKSHGIGKFV--KLESLTINDETRDYIVVQYADGLLRVAADQVG 574

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
              L R+   +   K   L K+   + WE  K + + AI+K+ VDL++LY  R +Q    Y
Sbjct: 575  S-LSRFR--STGDKAPELHKMTGKA-WENTKNRVRKAIKKLAVDLLKLYAKRSQQEGYAY 630

Query: 251  PKS-PAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
            P+  P   E    FPY+PT DQ +A  DV++D+ E + PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 631  PQDMPWQEEMEDSFPYQPTTDQLKAVQDVKRDM-ESDRPMDRLVCGDVGFGKTEVAIRAI 689

Query: 310  RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKS 369
               V++ KQ  +LAPT +L +QH+  + ERFA YP + VGLL+RF+T  E+ +  + + +
Sbjct: 690  FKAVTSGKQVALLAPTTILTQQHYHTLKERFAPYP-VNVGLLNRFRTAEERRDIQKRLAT 748

Query: 370  GELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPR 429
            GELDI+VGTH +LG  V + +LGLLV+DEEQRFGV QKEKI T KT +DVLTLSATPIPR
Sbjct: 749  GELDIVVGTHQILGKGVNFKDLGLLVIDEEQRFGVNQKEKIKTLKTQIDVLTLSATPIPR 808

Query: 430  TLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKG 489
            TLY++L+G R+ SLITTPPP R PI+THLS  + E + SAI+ ELDRGGQVFYV+PR++G
Sbjct: 809  TLYMSLSGIREMSLITTPPPTRRPIQTHLSPMNPESIRSAIRQELDRGGQVFYVVPRVEG 868

Query: 490  LEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNAN 549
            +EE    L E  P    AI HG+    +LE TM  F+ GE  IL+ T I+ESGLDI   N
Sbjct: 869  IEETTSKLREMIPGGRFAIAHGQMDESELESTMLTFSNGEADILVCTTIIESGLDIPRVN 928

Query: 550  TIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQ 609
            TI+++D  +FGL+QLYQLRGRVGRA  +A+A+L YP +  LSD A +RL A++E  +LG 
Sbjct: 929  TILIEDAHKFGLSQLYQLRGRVGRAGIQAHAWLFYPKQRALSDAARQRLRAIQEFTQLGS 988

Query: 610  GFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQV 669
            G+QLA RDM IRG G + G +Q+G +  +G DL+ EML ES+ ++    +  V     Q+
Sbjct: 989  GYQLAMRDMEIRGVGNLLGAEQSGQMEAIGFDLYMEMLEESIREIRGQEIPKV--DDTQI 1046

Query: 670  DININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLLK 729
            D+N+   +P++YI  ++  M         A K    L Q       +YG  P P   LL+
Sbjct: 1047 DLNLTAFIPADYIPDIDQKMSAYRAV--AAAKSKEELTQIAAEWSDRYGNLPVPANQLLR 1104

Query: 730  KLYLRRMAADIGINRIYSSGK 750
             + L+++A  +G +RI    K
Sbjct: 1105 VMELKQLAKQLGFSRIKPENK 1125


>G6FMB4_9CYAN (tr|G6FMB4) Transcription-repair coupling factor OS=Fischerella sp.
            JSC-11 GN=FJSC11DRAFT_0011 PE=4 SV=1
          Length = 1188

 Score =  560 bits (1442), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 293/646 (45%), Positives = 419/646 (64%), Gaps = 14/646 (2%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S +VDP  LR GDYVVH+  GIG F+ ++     N  E  +Y+ ++YADG+ ++   Q +
Sbjct: 510  SKQVDPNKLRPGDYVVHRNHGIGKFLKLESLTVNN--ETRDYLVVQYADGLLRVAADQVN 567

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
              L R+   ++  KP  L+K+   + WE  K K + AI+K+ VDL++LY  R +Q+   +
Sbjct: 568  A-LSRFRTTSD--KPPELNKMTGKA-WENTKNKVRKAIKKLAVDLLKLYAARSQQKGFAF 623

Query: 251  PKS-PAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
            P   P   E    FPY+PT DQ +A  DV++D+ E + PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 624  PADMPWQQELEDSFPYQPTTDQLKAVQDVKRDM-ESDRPMDRLVCGDVGFGKTEVAIRAI 682

Query: 310  RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKS 369
               V+A KQ  +LAPT +L +QH+  + ERFA YP I +GLL+RF++  E+ +  + + +
Sbjct: 683  FKAVTAGKQVALLAPTTILTQQHYHTLKERFAPYP-INIGLLNRFRSPQERRDIQKRLTT 741

Query: 370  GELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPR 429
            GELD++VGTH LL   V + +LG+LVVDEEQRFGV QKEKI T KT VDVLTLSATPIPR
Sbjct: 742  GELDVVVGTHQLLSKDVNFKDLGMLVVDEEQRFGVNQKEKIKTLKTQVDVLTLSATPIPR 801

Query: 430  TLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKG 489
            TLY++L+G R+ SLITTPPP R PIKTHL+  + E V SAI+ ELDRGGQVFYV+PR++G
Sbjct: 802  TLYMSLSGIREMSLITTPPPSRRPIKTHLAPMNPETVRSAIRQELDRGGQVFYVVPRVEG 861

Query: 490  LEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNAN 549
            +E+  E L +  P   IAI HG+  + +LE  M  F+  E  IL+ T I+ESGLDI   N
Sbjct: 862  IEKRTEELRQMIPGARIAIAHGQMEAGELESIMLSFSSAEADILVCTTIIESGLDIPRVN 921

Query: 550  TIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQ 609
            TI+++D  +FGLAQLYQLRGRVGRA  +A+A+L YP +  LSD A +RL A++E  +LG 
Sbjct: 922  TILIEDAHRFGLAQLYQLRGRVGRAGIQAHAWLFYPKQRTLSDAARQRLRAIQEFTQLGS 981

Query: 610  GFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQV 669
            G+QLA RDM IRG G + G +Q+G +  +G DL+ EML E++ ++    +  V     Q+
Sbjct: 982  GYQLAVRDMEIRGVGNLLGAEQSGQMEAIGFDLYMEMLEEAIREIRGQEIPKV--EDTQI 1039

Query: 670  DININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLLK 729
            D+N+   +P++YI  ++  M         A K    L Q       +YG  P+P   LL+
Sbjct: 1040 DLNLTAFVPADYIPDIDQKMSAYRAV--AAAKSKEELTQIAAEWSDRYGTIPKPASQLLR 1097

Query: 730  KLYLRRMAADIGINRIYSSGKT-VFMKANITKKVFKMMTDSMTSDI 774
             + L+++A  +G +RI    K  V ++  + +  + ++  ++  ++
Sbjct: 1098 VMELKQLAKKLGFSRIKPEAKQHVVLETPMEEPAWNLLAGNLPENL 1143


>K9PTH7_9CYAN (tr|K9PTH7) Transcription-repair coupling factor OS=Calothrix sp. PCC
            7507 GN=Cal7507_6092 PE=4 SV=1
          Length = 1155

 Score =  559 bits (1441), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 293/621 (47%), Positives = 406/621 (65%), Gaps = 13/621 (2%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S +VDP  LR GDYVVH+  GIG F+  K++    + E  +Y+ ++YADG+ ++   Q  
Sbjct: 477  SKQVDPNKLRQGDYVVHRSHGIGKFV--KLESLTINDETRDYLVVQYADGLLRVAADQVG 534

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
              L R+     +K P+ L K+   + WE  K K + AI+K+  DL++LY  R +Q+   Y
Sbjct: 535  S-LSRFRATG-DKAPE-LHKMTGKA-WENTKNKVRKAIKKLAFDLLKLYAARSQQQGFTY 590

Query: 251  PKS-PAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
            P+  P   E    FPY+PT DQ +A  DV++D+ E + PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 591  PQDMPWQEEMEDSFPYQPTTDQLKAVQDVKRDM-ESDRPMDRLVCGDVGFGKTEVAIRAI 649

Query: 310  RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKS 369
               V+A KQ  +LAPT +L +QH+  + ERFA YP + VGLL+RF+T  E+ +  + + +
Sbjct: 650  FKAVTAGKQVALLAPTTILTQQHYHTLKERFAPYP-VNVGLLNRFRTAEERRDIQKRLAT 708

Query: 370  GELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPR 429
            GELD++VGTH LLG  V + +LGLLVVDEEQRFGV QKEKI + KT +DVLTLSATPIPR
Sbjct: 709  GELDVVVGTHQLLGKGVTFRDLGLLVVDEEQRFGVNQKEKIKSLKTQLDVLTLSATPIPR 768

Query: 430  TLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKG 489
            TLY++L+G R+ SLITTPPP R PIKTHL+  + E + +AI+ ELDRGGQVFYV+PR++G
Sbjct: 769  TLYMSLSGIREMSLITTPPPSRRPIKTHLAQMNPESIRTAIRQELDRGGQVFYVVPRVEG 828

Query: 490  LEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNAN 549
            +EE    L E+ P    A+ HG+    QLE TM  F  G+  IL+ T I+ESGLDI   N
Sbjct: 829  IEETTTKLRETIPSARFAVAHGQMDEGQLESTMLTFNNGDADILVCTTIIESGLDIPRVN 888

Query: 550  TIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQ 609
            TI+++D  +FGL+QLYQLRGRVGRA  +A+A+L YP +  LSD A +RL A++E  +LG 
Sbjct: 889  TILIEDAHRFGLSQLYQLRGRVGRAGIQAHAWLFYPQQRALSDAARQRLRAIQEFTQLGS 948

Query: 610  GFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQV 669
            G+QLA RDM IRG G + G +Q+G +  +G DL+ EML ES+ ++    +  V     Q+
Sbjct: 949  GYQLAMRDMEIRGVGNLLGAEQSGQMEAIGFDLYMEMLEESIREIRGQEIPQV--SDTQI 1006

Query: 670  DININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLLK 729
            D+N+   +P++YI  L+  M         A K    L Q   +   +YG  P P   LL+
Sbjct: 1007 DLNLTAFIPADYILDLDQKMSAYRAV--AAAKSKEELTQIGVDWSDRYGAIPVPASQLLR 1064

Query: 730  KLYLRRMAADIGINRIYSSGK 750
             + L+++A  +G +RI    K
Sbjct: 1065 VMELKQLAKKLGFSRIKPENK 1085


>B1X1M8_CYAA5 (tr|B1X1M8) Transcription-repair coupling factor OS=Cyanothece sp.
            (strain ATCC 51142) GN=cce_3710 PE=4 SV=1
          Length = 1159

 Score =  559 bits (1441), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 302/643 (46%), Positives = 416/643 (64%), Gaps = 19/643 (2%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S KVD   L  GDYVVHK  GIG F+ ++      S    EY+ ++YADG+ ++P   S 
Sbjct: 485  SKKVDLQQLHPGDYVVHKSHGIGKFLKLE------SLATREYLVVQYADGILRIPA-DSF 537

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
              L RY   +    P  L K+   + W+K K K +  I+K+ VDL+ LY  R K     Y
Sbjct: 538  DSLSRYR--HTGSTPPQLHKMTGKT-WQKSKQKVRKNIKKLAVDLINLYAKRAKNTGFTY 594

Query: 251  P-KSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
            P  +P   E    FPY+PTPDQ +A  DV+ DL E + PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 595  PLDTPWQQELEDSFPYQPTPDQLKAIQDVKIDL-ESDRPMDRLVCGDVGFGKTEVAVRAI 653

Query: 310  -RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIK 368
             + V S  KQ   LAPT +L +QH+  + ERFA YP I +GLL+RF+T +EK+E ++ + 
Sbjct: 654  FKAVTSGHKQVAFLAPTTILTQQHYHTLKERFAPYP-INIGLLNRFRTTSEKKEIIQRLA 712

Query: 369  SGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIP 428
            +GELDI+VGT  LLG  V + +LGLLVVDEEQRFGV QKEKI   K+ VDVLTL+ATPIP
Sbjct: 713  TGELDIVVGTQQLLGKSVKFKDLGLLVVDEEQRFGVNQKEKIKEIKSHVDVLTLTATPIP 772

Query: 429  RTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIK 488
            RTLY++L+G R+ SLITTPPP R PIKTHLS ++ + V +AI+ ELDRGGQVFYV+PR++
Sbjct: 773  RTLYMSLSGIREMSLITTPPPSRRPIKTHLSRYNPDVVRTAIRNELDRGGQVFYVVPRVE 832

Query: 489  GLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNA 548
            G+EEV   ++   P   +AI HG+    +LE TM  F  G+  IL+ T IVESGLDI   
Sbjct: 833  GIEEVAAQIKTMVPSARMAIAHGQMDVNELEITMLSFNNGDADILVCTTIVESGLDIPRV 892

Query: 549  NTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELG 608
            NTIIV+D Q+FGLAQLYQLRGRVGR+  +A+A+LLYP K  L++ A +RL AL+E  +LG
Sbjct: 893  NTIIVEDAQKFGLAQLYQLRGRVGRSGIQAHAWLLYPSKAQLTETARQRLRALQEFSQLG 952

Query: 609  QGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQ 668
             G+QLA RDM IRG G + G +Q+G + ++G +L+ EML E++ +++   +  V     Q
Sbjct: 953  SGYQLATRDMEIRGVGNLLGAEQSGQMESIGFELYMEMLQEAIREIQGQEIPKV--EDTQ 1010

Query: 669  VDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLL 728
            +D+ +   +P+EYI  +E  M           K    L Q       +YG  P P+E LL
Sbjct: 1011 IDLQLTAFIPTEYIPDMEQKMSAYRGIAVANSKK--ELAQIAAEWNDRYGNLPVPVEQLL 1068

Query: 729  KKLYLRRMAADIGINRIYSSGKT-VFMKANITKKVFKMMTDSM 770
            + + L+++A  +G +RI   GK  + ++  + +  +K++ + +
Sbjct: 1069 QVMELKQLAKSLGFSRIKPEGKQHIVLETPMEEPAWKLLQEKL 1111


>G6GSW5_9CHRO (tr|G6GSW5) Transcription-repair coupling factor OS=Cyanothece sp.
            ATCC 51472 GN=Cy51472DRAFT_2138 PE=4 SV=1
          Length = 1159

 Score =  559 bits (1441), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 302/643 (46%), Positives = 416/643 (64%), Gaps = 19/643 (2%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S KVD   L  GDYVVHK  GIG F+ ++      S    EY+ ++YADG+ ++P   S 
Sbjct: 485  SKKVDLQQLHPGDYVVHKSHGIGKFLKLE------SLATREYLVVQYADGILRIPA-DSF 537

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
              L RY   +    P  L K+   + W+K K K +  I+K+ VDL+ LY  R K     Y
Sbjct: 538  DSLSRYR--HTGSTPPQLHKMTGKT-WQKSKQKVRKNIKKLAVDLINLYAKRAKNTGFTY 594

Query: 251  P-KSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
            P  +P   E    FPY+PTPDQ +A  DV+ DL E + PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 595  PLDTPWQQELEDSFPYQPTPDQLKAIQDVKIDL-ESDRPMDRLVCGDVGFGKTEVAVRAI 653

Query: 310  -RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIK 368
             + V S  KQ   LAPT +L +QH+  + ERFA YP I +GLL+RF+T +EK+E ++ + 
Sbjct: 654  FKAVTSGHKQVAFLAPTTILTQQHYHTLKERFAPYP-INIGLLNRFRTTSEKKEIIQRLA 712

Query: 369  SGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIP 428
            +GELDI+VGT  LLG  V + +LGLLVVDEEQRFGV QKEKI   K+ VDVLTL+ATPIP
Sbjct: 713  TGELDIVVGTQQLLGKSVKFKDLGLLVVDEEQRFGVNQKEKIKEIKSHVDVLTLTATPIP 772

Query: 429  RTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIK 488
            RTLY++L+G R+ SLITTPPP R PIKTHLS ++ + V +AI+ ELDRGGQVFYV+PR++
Sbjct: 773  RTLYMSLSGIREMSLITTPPPSRRPIKTHLSRYNPDVVRTAIRNELDRGGQVFYVVPRVE 832

Query: 489  GLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNA 548
            G+EEV   ++   P   +AI HG+    +LE TM  F  G+  IL+ T IVESGLDI   
Sbjct: 833  GIEEVAAQIKTMVPSARMAIAHGQMDVNELEITMLSFNNGDADILVCTTIVESGLDIPRV 892

Query: 549  NTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELG 608
            NTIIV+D Q+FGLAQLYQLRGRVGR+  +A+A+LLYP K  L++ A +RL AL+E  +LG
Sbjct: 893  NTIIVEDAQKFGLAQLYQLRGRVGRSGIQAHAWLLYPSKAQLTETARQRLRALQEFSQLG 952

Query: 609  QGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQ 668
             G+QLA RDM IRG G + G +Q+G + ++G +L+ EML E++ +++   +  V     Q
Sbjct: 953  SGYQLATRDMEIRGVGNLLGAEQSGQMESIGFELYMEMLQEAIREIQGQEIPKV--EDTQ 1010

Query: 669  VDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLL 728
            +D+ +   +P+EYI  +E  M           K    L Q       +YG  P P+E LL
Sbjct: 1011 IDLQLTAFIPTEYIPDMEQKMSAYRGIAVANSKK--ELAQIAAEWNDRYGNLPVPVEQLL 1068

Query: 729  KKLYLRRMAADIGINRIYSSGKT-VFMKANITKKVFKMMTDSM 770
            + + L+++A  +G +RI   GK  + ++  + +  +K++ + +
Sbjct: 1069 QVMELKQLAKSLGFSRIKPEGKQHIVLETPMEEPAWKLLQEKL 1111


>Q3M9F6_ANAVT (tr|Q3M9F6) Transcription-repair coupling factor OS=Anabaena
            variabilis (strain ATCC 29413 / PCC 7937) GN=Ava_2767
            PE=4 SV=1
          Length = 1188

 Score =  558 bits (1439), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 293/621 (47%), Positives = 402/621 (64%), Gaps = 13/621 (2%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S +VDP  LR GDYVVH+  GIG F+  K++    + E  +Y+ ++YADG+ ++   Q  
Sbjct: 510  SKQVDPNKLRPGDYVVHRSHGIGKFV--KLESLTINDETRDYIVVQYADGLLRVAADQVG 567

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
              L R+    +  KP  L K+   + W+  K + + AI+K+ VDL++LY  R +Q+   Y
Sbjct: 568  A-LSRFRATGD--KPPELHKMTGKA-WDNTKNRVRKAIKKLAVDLLKLYAARSQQQGFAY 623

Query: 251  PKS-PAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
            P+  P   E    FPY+ T DQ +A  DV++D+ E + PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 624  PQDMPWQEEMEDSFPYQATTDQLKAVQDVKRDM-ESDRPMDRLVCGDVGFGKTEVAIRAI 682

Query: 310  RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKS 369
               V++ KQ  +LAPT +L +QH+  I ERFA YP + VGLL+RF+T  E+    + + +
Sbjct: 683  FKAVTSGKQVALLAPTTILTQQHYHTIKERFAPYP-VNVGLLNRFRTAEERRNIQKRLAT 741

Query: 370  GELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPR 429
            GELDI+VGTH LLG  V + +LGLLV+DEEQRFGV QKEKI + KT VDVLTLSATPIPR
Sbjct: 742  GELDIVVGTHQLLGKSVNFKDLGLLVIDEEQRFGVNQKEKIKSLKTQVDVLTLSATPIPR 801

Query: 430  TLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKG 489
            TLY++L+G R+ SLITTPPP R PIKTHLS  + E V SAI+ ELDRGGQVFYV+PR+ G
Sbjct: 802  TLYMSLSGIREMSLITTPPPTRRPIKTHLSPRNPESVRSAIRQELDRGGQVFYVVPRVDG 861

Query: 490  LEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNAN 549
            +EE+   L E  P    AI HG+    +LE TM  F+ G+  IL+ T I+ESGLDI   N
Sbjct: 862  IEEITANLREMVPGARFAIAHGQMDESELESTMLTFSNGDADILVCTTIIESGLDIPRVN 921

Query: 550  TIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQ 609
            TI+++D  +FGL+QLYQLRGRVGRA  +A+A+L YP +  LSD A +RL A++E  +LG 
Sbjct: 922  TILIEDAHRFGLSQLYQLRGRVGRAGIQAHAWLFYPKQRELSDAARQRLRAIQEFTQLGS 981

Query: 610  GFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQV 669
            G+QLA RDM IRG G + G +Q+G +  +G DL+ EML ES+ ++    +  V     Q+
Sbjct: 982  GYQLAMRDMEIRGVGNLLGAEQSGQMEAIGFDLYMEMLEESIREIRGQEIPKV--DDTQI 1039

Query: 670  DININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLLK 729
            D+N+   +P++YI  ++  M           KD   L Q       +YG  P     LL+
Sbjct: 1040 DLNLTAFIPADYITDIDQKMSAYRAVAAAKSKD--ELTQIAAEWSDRYGTLPVSANQLLR 1097

Query: 730  KLYLRRMAADIGINRIYSSGK 750
             + L+++A  +G +RI    K
Sbjct: 1098 VMELKQLAKKLGFSRIKPESK 1118


>K9QIG9_9NOSO (tr|K9QIG9) Transcription-repair coupling factor OS=Nostoc sp. PCC
            7107 GN=Nos7107_4315 PE=4 SV=1
          Length = 1168

 Score =  558 bits (1438), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 293/621 (47%), Positives = 405/621 (65%), Gaps = 13/621 (2%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S +VDP  LR GDYVVH+  GIG F+  K++    + E  +Y+ ++YADG+ ++   Q  
Sbjct: 490  SKQVDPNKLRPGDYVVHRSHGIGKFV--KLESLTFNDETRDYIVVQYADGLLRVAADQVG 547

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
              L R+     +K P+ L K+   + W+  K + + AI+K+ VDL++LY  R +Q+   Y
Sbjct: 548  S-LSRFRTTG-DKAPE-LHKMTGKA-WDNTKNRVRKAIKKLAVDLLKLYAARSQQQGYAY 603

Query: 251  PKS-PAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
            P   P   E    FPY+PT DQ +A  DV++D+ ER+ PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 604  PHDMPWQEEMEDSFPYQPTTDQLKAVQDVKRDM-ERDRPMDRLVCGDVGFGKTEVAIRAI 662

Query: 310  RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKS 369
               V++ KQ  +LAPT +L +QH+  + ERFA YP + VGLL+RF++  E+    + + +
Sbjct: 663  FKAVTSGKQVALLAPTTILTQQHYHTLKERFAPYP-VNVGLLNRFRSAEERRTIQKRLAT 721

Query: 370  GELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPR 429
            GELDI+VGTH LLG  V + +LGLLV+DEEQRFGV QKEKI + KT VDVLTLSATPIPR
Sbjct: 722  GELDIVVGTHQLLGKSVSFKDLGLLVIDEEQRFGVNQKEKIKSLKTQVDVLTLSATPIPR 781

Query: 430  TLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKG 489
            TLY++L+G R+ SLITTPPP R PIKTHLS  + E V SAI+ ELDRGGQVFYV+PR+ G
Sbjct: 782  TLYMSLSGIREMSLITTPPPTRRPIKTHLSPRNPESVRSAIRQELDRGGQVFYVVPRVDG 841

Query: 490  LEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNAN 549
            +EE+   L E  P    AI HG+    +LE TM  F+ G+  IL+ T I+ESGLDI   N
Sbjct: 842  IEEITANLREMVPGARFAIAHGQMDESELESTMLTFSNGDADILVCTTIIESGLDIPRVN 901

Query: 550  TIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQ 609
            TI+++D  +FGL+QLYQLRGRVGRA  +A+A+L YP +  LSD A +RL A++E  +LG 
Sbjct: 902  TILIEDAHRFGLSQLYQLRGRVGRAGIQAHAWLFYPKQRTLSDAARQRLRAIQEFTQLGS 961

Query: 610  GFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQV 669
            G+QLA RDM IRG G + G +Q+G +  +G DL+ EML E++ ++    +  V     Q+
Sbjct: 962  GYQLAMRDMEIRGVGNLLGAEQSGQMDAIGFDLYMEMLEEAIREIRGQEIPQV--DDTQI 1019

Query: 670  DININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLLK 729
            D+N+   +P++YI  ++  M         A K    L Q       +YG  P P   LL+
Sbjct: 1020 DLNLTAFVPADYIPDIDQKMSAYRAV--AAAKSQEELTQIAAEWSDRYGTLPVPANQLLR 1077

Query: 730  KLYLRRMAADIGINRIYSSGK 750
             + L+++A  +G +RI    K
Sbjct: 1078 VMELKQLAKKLGFSRIKPENK 1098


>K9VXQ1_9CYAN (tr|K9VXQ1) Transcription-repair coupling factor OS=Crinalium
            epipsammum PCC 9333 GN=Cri9333_1435 PE=4 SV=1
          Length = 1153

 Score =  558 bits (1437), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 294/622 (47%), Positives = 407/622 (65%), Gaps = 15/622 (2%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S +VDP  L  GDYVVH+  G+G F+  K++    + E  +Y+ I+YADG+ ++   Q  
Sbjct: 475  SKQVDPNKLEAGDYVVHRNHGLGKFL--KLESLTLNHETRDYLVIQYADGLLRVAADQVG 532

Query: 191  KM-LYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPP 249
             +  +R+     ++ P AL K++  + WEK K K + AI+K+ VDL+ LY  R +Q    
Sbjct: 533  SLSRFRH---TADQAP-ALHKMSGKA-WEKTKGKVRKAIKKLAVDLLNLYAKRSQQTGFT 587

Query: 250  YP-KSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRA 308
            YP  SP   E    FPY+PTPDQ +A  DV++D+ E + PMDRL+CGDVGFGKTEVA+RA
Sbjct: 588  YPPDSPWQEELEDSFPYQPTPDQLKATQDVKRDM-ESDRPMDRLVCGDVGFGKTEVAIRA 646

Query: 309  IRCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIK 368
            I   V+A KQ + LAPT +L +QH+  + ERFA YP + VGLL+RF++  E+   ++ + 
Sbjct: 647  IFKAVTAGKQVVFLAPTTILTQQHYHTLKERFAPYP-VNVGLLNRFRSAEERRNIIQRLA 705

Query: 369  SGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIP 428
            +GELDI+VGTH LL   +   +LGLLVVDEEQRFGV QKEKI + KT VDVLTLSATPIP
Sbjct: 706  TGELDIVVGTHQLLSKEIKVKDLGLLVVDEEQRFGVNQKEKIKSLKTQVDVLTLSATPIP 765

Query: 429  RTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIK 488
            RTLY++L+G R+ SLITTPPP R PIKTHLSSF  E + +AI+ ELDRGGQVFYV+PRI+
Sbjct: 766  RTLYMSLSGIREMSLITTPPPSRRPIKTHLSSFDPEAIRTAIRQELDRGGQVFYVVPRIE 825

Query: 489  GLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNA 548
            G+EE    + E  P   +AI HG+    +LE TM  F+ GE  IL+ T I+ESGLDI   
Sbjct: 826  GIEETGAKVREMIPGCRLAIAHGQMDESELEATMLAFSSGEADILLCTTIIESGLDIPRV 885

Query: 549  NTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELG 608
            NTI+++D  +FGL+QLYQLRGRVGRA  +A+A+L YP ++ L+D A +RL A++E  +LG
Sbjct: 886  NTILIEDAHKFGLSQLYQLRGRVGRAGIQAHAWLFYPKQSKLTDAARQRLRAIQEFTQLG 945

Query: 609  QGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQ 668
             G+QLA RDM IRG G + G +Q+G +  +G DL+ EML ES+ ++    +  V     Q
Sbjct: 946  SGYQLATRDMEIRGVGNLLGAEQSGQMDAIGFDLYMEMLEESIREIRGQEIPKV--DDTQ 1003

Query: 669  VDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLL 728
            +D+ +   +P++YI  LE  M           K+   L         +YG+ P+  + LL
Sbjct: 1004 IDLQLTALIPADYIQDLEQKMSAYRAVASANSKE--ELNNIAAEWSDRYGEIPKAAKQLL 1061

Query: 729  KKLYLRRMAADIGINRIYSSGK 750
              + L+++A  +G +RI    K
Sbjct: 1062 CVMELKQVAKQLGFSRIKPEAK 1083


>K9VC73_9CYAN (tr|K9VC73) Transcription-repair coupling factor OS=Oscillatoria
            nigro-viridis PCC 7112 GN=Osc7112_0439 PE=4 SV=1
          Length = 1190

 Score =  558 bits (1437), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 298/622 (47%), Positives = 412/622 (66%), Gaps = 15/622 (2%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S +VDP  L  GDYVVH++ G+G FI  K++      E  EY+ I+YADG  ++   Q  
Sbjct: 513  SKQVDPNKLSPGDYVVHRQHGVGKFI--KLERLTIDRETREYLLIQYADGTLRVAADQLG 570

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
              L R+    +  K   L+KL   + WEK KTK + A++K+ VDL+ LY  R KQ    +
Sbjct: 571  A-LSRFRTVGD--KVPDLNKLTGQT-WEKTKTKVRKAVKKLAVDLLNLYAKRAKQTGYAF 626

Query: 251  PKS-PAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
            P   P   E    FPY+PTPDQ +A  DV++D+ E + PMDRL+CGDVGFGKTEVALRAI
Sbjct: 627  PPDMPWQQELEDSFPYQPTPDQLKATQDVKRDM-EGDRPMDRLVCGDVGFGKTEVALRAI 685

Query: 310  RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKS 369
               V+A KQ  +LAPT +L +QH+  +SERF+ YP I+VGLL+RF+T+ E+ E  + + +
Sbjct: 686  FKAVTAGKQVALLAPTTILTQQHYHTLSERFSPYP-IEVGLLNRFRTETERREIHKRLAT 744

Query: 370  GELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPR 429
            GELD+IVGT ++L   + + +LGLLVVDEEQRFGVKQKE I   KT VDVLTL+ATPIPR
Sbjct: 745  GELDVIVGTQAVLSKAIKFRDLGLLVVDEEQRFGVKQKEAIKALKTEVDVLTLTATPIPR 804

Query: 430  TLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKG 489
            TLY++L+G R+ SLI+TPPP R PI+THL+ ++ E V SAI+ ELDRGGQVFYV+PRI+G
Sbjct: 805  TLYMSLSGIREMSLISTPPPSRRPIQTHLAPYNPETVRSAIRQELDRGGQVFYVVPRIEG 864

Query: 490  LEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNAN 549
            ++E+   L+E  P   IAI HG+  + +LE  M  F+  E  IL+ T I+ESGLDI   N
Sbjct: 865  IDELAVQLQEMVPSARIAIAHGQMEASELESIMLTFSAAEFDILVCTTIIESGLDIPRVN 924

Query: 550  TIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQ 609
            TI+++D Q+FGL QLYQLRGRVGRA  +A+A+L YP +N LSD A +RL A++E  +LG 
Sbjct: 925  TILIEDAQKFGLGQLYQLRGRVGRAGIQAHAWLFYPKQNQLSDAARQRLRAIQEFAQLGS 984

Query: 610  GFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQV 669
            G+QLA RDM IRG G + G +Q+G +  +G DL+ EML E++ +++   +  V     Q+
Sbjct: 985  GYQLAVRDMEIRGSGDVLGTEQSGQMEAIGFDLYAEMLEEAIREIKGQEIPKV--EDAQI 1042

Query: 670  DININPHLPSEYINHLENPMEIINEAERVAEKDT-WSLMQFTENLRRQYGKEPRPMEVLL 728
            D+ +   +P++YI  L+  M        VA  +T   L Q   +   +YG  P P + L+
Sbjct: 1043 DLTLTAFIPADYIADLDQKMSAYRS---VASANTPEELQQIQADWCDRYGSIPLPAQQLI 1099

Query: 729  KKLYLRRMAADIGINRIYSSGK 750
            + + L+++A  IG +RI    K
Sbjct: 1100 RVVELKQIAKKIGFSRIKPENK 1121


>Q2JTR6_SYNJA (tr|Q2JTR6) Transcription-repair coupling factor OS=Synechococcus sp.
            (strain JA-3-3Ab) GN=mfd PE=4 SV=1
          Length = 1156

 Score =  558 bits (1437), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 300/645 (46%), Positives = 424/645 (65%), Gaps = 13/645 (2%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S +VDP  L+ GD+VVHK  GIG F+  +++      E  EY+ I+Y+DG+ ++   Q +
Sbjct: 476  SRQVDPNLLKPGDFVVHKAHGIGQFL--RLESLTIGGETREYLVIQYSDGLLRVAADQVN 533

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
              L RY   ++   P AL K++  S WEK K K K +++K+  DL++LY  R +Q    +
Sbjct: 534  S-LSRYRASSDG--PPALHKMSG-STWEKTKQKVKKSLKKVAFDLLQLYAKRAEQEGYAF 589

Query: 251  P-KSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
            P  SP   EF   FPY  TPDQ +A  ++++D+ E   PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 590  PPDSPWQQEFEESFPYPLTPDQIRAVQEIKRDM-ESPRPMDRLLCGDVGFGKTEVAIRAI 648

Query: 310  RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKS 369
               V+A KQ  +LAPT +L +QH+  + ERFA YP I+VGLL+RF+T  EK+E L  +KS
Sbjct: 649  FKAVTAGKQVALLAPTTILTQQHYHTLKERFAPYP-IQVGLLNRFRTPEEKKEILARLKS 707

Query: 370  GELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPR 429
            GELD+IVGTH LLG  V + +LGLLV+DEEQRFGV QKEKI   KT VDVLTL+ATPIPR
Sbjct: 708  GELDVIVGTHQLLGKDVQFRDLGLLVIDEEQRFGVNQKEKIKLLKTQVDVLTLTATPIPR 767

Query: 430  TLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKG 489
            TLY+AL+G R+ SLI TPPP R PIKTHLS ++ E + +AI+ ELDRGGQVFYV+ RI+G
Sbjct: 768  TLYMALSGLREMSLIQTPPPSRRPIKTHLSPYNPEVIRTAIRQELDRGGQVFYVVNRIEG 827

Query: 490  LEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNAN 549
            +EE    L E  P   IAI HG+    +LE TM  F  GEI IL+ T I+ESGLDI   N
Sbjct: 828  IEETSAKLREWVPGARIAIAHGQMPEGELEATMLAFNNGEIDILVCTTIIESGLDIPRVN 887

Query: 550  TIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQ 609
            TI++++ Q+FGLAQLYQLRGRVGRA  +A+A+L Y +  +L+++A +RL A++E  +LG 
Sbjct: 888  TILIENAQEFGLAQLYQLRGRVGRAGIQAHAWLFYREDGILTEEARKRLQAIQEFTQLGS 947

Query: 610  GFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQV 669
            G+QLA RDM IRG G + G QQ+G +  VG DL+ EML E++ ++    +  V     Q+
Sbjct: 948  GYQLALRDMEIRGIGNLLGTQQSGQLNAVGFDLYLEMLQEAIREIRGQEIPQV--EDTQI 1005

Query: 670  DININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLLK 729
            D+NI   +P  YI   +  M+   +    A      L+Q  +  + ++G  P+P + LL+
Sbjct: 1006 DLNITAMIPQSYIPDEDQKMQAYRQL--AAAGSRVELLQIAQEWQDRFGPLPKPTQELLR 1063

Query: 730  KLYLRRMAADIGINRIYSSGKTVFMKANITKKVFKMMTDSMTSDI 774
             + L+ +A  +G +RI  + + V ++  + +  +  + +++ + +
Sbjct: 1064 VMELKILARTLGFSRIRPAKEHVLLETPMEEPAWNRLKEALPAHL 1108


>I4GX20_MICAE (tr|I4GX20) Transcription-repair-coupling factor OS=Microcystis
            aeruginosa PCC 9806 GN=mfd PE=4 SV=1
          Length = 1169

 Score =  557 bits (1435), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 295/650 (45%), Positives = 429/650 (66%), Gaps = 17/650 (2%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSA--EPTEYVFIEYADGMAKLPVKQ 188
            S +VD   LR  D+VVHK  GIG FI ++      S   +  +Y+ I+YADG+ ++P   
Sbjct: 488  SVQVDVNKLRPLDFVVHKHHGIGQFIKLEKQESTISGVVQGRDYLVIKYADGLLRVPADS 547

Query: 189  SSKM-LYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRR 247
               +  YR+     N++P+ L K++  + WE  K + + +++K+ VDL+ +Y  R ++  
Sbjct: 548  VDNLSRYRHT---GNQEPE-LHKISGKA-WEATKARVRKSVKKLAVDLINIYAQRAQKSG 602

Query: 248  PPYP-KSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVAL 306
              YP  +P   E    FPY+PT DQ +A  DV++DL E + PMDRL+CGDVGFGKTEVA+
Sbjct: 603  FAYPVDNPWQRELEDSFPYQPTADQLKAIQDVKRDL-ESDRPMDRLVCGDVGFGKTEVAI 661

Query: 307  RAI-RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLE 365
            RAI + V +  KQ  +LAPT +L +QH+  + ERFA YP I VGLL+RF+T +EK++ ++
Sbjct: 662  RAIFKAVTTGHKQVALLAPTTILTQQHYHTLKERFAPYP-INVGLLNRFRTNSEKKDIVQ 720

Query: 366  SIKSGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSAT 425
             +K+GELDI+VGT  LL   V + +LGLLV+DEEQRFGV QKEKI  FK+++DVLTLSAT
Sbjct: 721  RLKTGELDIVVGTQLLLSKAVEFKDLGLLVIDEEQRFGVNQKEKIKAFKSNIDVLTLSAT 780

Query: 426  PIPRTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLP 485
            PIPRTLY++L+G R+ SLITTPPP R PI+THLSS++ + + +AI+ ELDRGGQ+FYV+P
Sbjct: 781  PIPRTLYMSLSGVREMSLITTPPPSRRPIQTHLSSYNSDAIRTAIRNELDRGGQIFYVVP 840

Query: 486  RIKGLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDI 545
            RI+G+EE    ++   P   IAIGHG+    +LE TM  F  GE  IL+ T IVESGLDI
Sbjct: 841  RIEGIEEKAAAIQGMIPGARIAIGHGRMDESELETTMLAFNNGEADILVCTTIVESGLDI 900

Query: 546  QNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECR 605
               NTII++D Q+FGLAQLYQLRGRVGR+  +A+A+LLYP K  L++ A ERL A++E  
Sbjct: 901  PRVNTIIIEDAQKFGLAQLYQLRGRVGRSGVQAHAWLLYPAKAELTETARERLKAIQEFT 960

Query: 606  ELGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYH 665
            +LG G+QLA RD+ IRG G + G +Q+G +  +G DL+ EML E+L +++   +  V   
Sbjct: 961  QLGSGYQLATRDLEIRGAGNLLGAEQSGQMEAIGFDLYMEMLQEALREIQGQEIPQV--E 1018

Query: 666  SVQVDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPME 725
              Q+D+ +   +P++YI+ LE  M++         +   +L Q   +L  +YG  P P+ 
Sbjct: 1019 DTQIDLKLTAFIPNDYISDLEQKMDVYRAIATANSQK--NLGQIAADLVDRYGAIPAPVA 1076

Query: 726  VLLKKLYLRRMAADIGINRIYSSGKT-VFMKANITKKVFKMMTDSMTSDI 774
             L K + L+ +A  +G +RI   GK  + ++  + +  +K++ + +   I
Sbjct: 1077 QLFKVIELKHLAKSLGFSRIKPDGKQHIILETPMEEPAWKLLQEHLPQHI 1126


>I4IB81_9CHRO (tr|I4IB81) Transcription-repair-coupling factor OS=Microcystis sp.
            T1-4 GN=mfd PE=4 SV=1
          Length = 1160

 Score =  557 bits (1435), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 298/650 (45%), Positives = 428/650 (65%), Gaps = 17/650 (2%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSA--EPTEYVFIEYADGMAKLPVKQ 188
            S +VD   LR  D+VVHK  GIG FI ++      S   +  +Y+ I+YADG+ ++P   
Sbjct: 479  SVQVDVNKLRPLDFVVHKHHGIGQFIKLEKQESTISGIVQGRDYLVIKYADGLLRVPADS 538

Query: 189  SSKM-LYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRR 247
               +  YR+     N++P+ L K++  + WE  K + + +I+K+ VDL+ +Y  R K+  
Sbjct: 539  VDNLSRYRHT---GNQEPE-LHKISGKA-WEATKARVRKSIKKLAVDLINIYAQRAKKSG 593

Query: 248  PPYP-KSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVAL 306
              YP  +P   E    FPY+PT DQ +A  DV++DL E + PMDRL+CGDVGFGKTEVA+
Sbjct: 594  FAYPMDNPWQRELEDSFPYQPTADQLKAIQDVKRDL-ESDRPMDRLVCGDVGFGKTEVAI 652

Query: 307  RAI-RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLE 365
            RAI + V +  KQ  +LAPT +L +QH+  + ERFA YP I VGLL+RF+T +EK++ ++
Sbjct: 653  RAIFKAVTTGHKQVALLAPTTILTQQHYHTLKERFAPYP-INVGLLNRFRTNSEKKDIVQ 711

Query: 366  SIKSGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSAT 425
             +K+GELDI+VGT  LL   V + +LGLLV+DEEQRFGV QKEKI  FK+++DVLTLSAT
Sbjct: 712  RLKTGELDIVVGTQLLLSKAVEFKDLGLLVIDEEQRFGVNQKEKIKAFKSNIDVLTLSAT 771

Query: 426  PIPRTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLP 485
            PIPRTLY++L+G R+ SLITTPPP R PI+THLSS++ + + +AI+ ELDRGGQVFYVLP
Sbjct: 772  PIPRTLYMSLSGVREMSLITTPPPSRRPIQTHLSSYNSDVIRTAIRNELDRGGQVFYVLP 831

Query: 486  RIKGLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDI 545
            RI+G+EE    ++   P   IAIGHG+    +LE TM  F  GE  IL+ T IVESGLDI
Sbjct: 832  RIEGIEEKAAAIQGMIPGARIAIGHGRMDESELETTMLAFNNGEADILVCTTIVESGLDI 891

Query: 546  QNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECR 605
               NTII++D Q+FGLAQLYQLRGRVGR+  +A+A+LLYP K  L++ A ERL A++E  
Sbjct: 892  PRVNTIIIEDAQKFGLAQLYQLRGRVGRSGVQAHAWLLYPAKAELTETARERLKAIQEFT 951

Query: 606  ELGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYH 665
            +LG G+QLA RD+ IRG G + G +Q+G +  +G DL+ EML E+L +++   +  V   
Sbjct: 952  QLGSGYQLATRDLEIRGAGNLLGAEQSGQMEAIGFDLYMEMLQEALQEIQGQEIPQV--E 1009

Query: 666  SVQVDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPME 725
              Q+D+ +   +P++YI+  E  M++         +   +L Q   +L  +YG  P P+ 
Sbjct: 1010 DTQIDLKLTAFIPNDYISDPEQKMDVYRAIATANSQK--NLGQIAADLVDRYGGIPSPVA 1067

Query: 726  VLLKKLYLRRMAADIGINRIYSSGKT-VFMKANITKKVFKMMTDSMTSDI 774
             L K + L+ +A  +G +RI   GK  + ++  + +  +K++ + +   I
Sbjct: 1068 QLFKVIELKHLAKSLGFSRIKPDGKQHIILETPMEEPAWKLLQEHLPQHI 1117


>K7WHG1_9NOST (tr|K7WHG1) Transcription-repair coupling factor OS=Anabaena sp. 90
            GN=ANA_C12216 PE=4 SV=1
          Length = 1171

 Score =  556 bits (1434), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 297/643 (46%), Positives = 416/643 (64%), Gaps = 14/643 (2%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S +VDP  LR GDYVVH+  GIG F+  K++    + E  +Y+ ++YADG+ ++   Q  
Sbjct: 495  SKQVDPNKLRQGDYVVHRSHGIGKFV--KLESLTINDETRDYLVVQYADGLLRVAADQVG 552

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
              L R+     ++ P+ L K++  + WE  K+K + AI+K+ VDL++LY  R +Q+   Y
Sbjct: 553  S-LSRF-RTGGDQAPE-LHKMSGKA-WENTKSKVRKAIKKLAVDLLKLYAARSQQQGFSY 608

Query: 251  PKS-PAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
            P   P   E    FPY+PT DQ +A  DV++D+ E E PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 609  PHDMPWQEEMEDSFPYQPTTDQLKAVQDVKRDM-ESERPMDRLVCGDVGFGKTEVAIRAI 667

Query: 310  RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKS 369
               V+A KQ  +LAPT +L +QH+  I ERFA YP I VGLL+RF++  EK    + + +
Sbjct: 668  FKAVTAGKQVALLAPTTILTQQHYHTIKERFAPYP-INVGLLNRFRSAEEKRNIQKRLAT 726

Query: 370  GELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPR 429
            GELDI+VGTH LLG  V + +LGLLV+DEEQRFGV QKEKI + KT VDVLTLSATPIPR
Sbjct: 727  GELDIVVGTHQLLGKSVQFKDLGLLVIDEEQRFGVNQKEKIKSLKTQVDVLTLSATPIPR 786

Query: 430  TLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKG 489
            TLY++L+G R+ SLITTPPP R PI+THLS  + + + SAI+ ELDRGGQVFYV+PR+ G
Sbjct: 787  TLYMSLSGIREMSLITTPPPTRRPIQTHLSPLNSDVIRSAIRQELDRGGQVFYVVPRVDG 846

Query: 490  LEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNAN 549
            +EE    L E  P    AI HG+    +LE TM  F   +  IL+ T I+ESGLDI   N
Sbjct: 847  IEETTTKLREMVPGGRFAIAHGQMDESELESTMLTFGNNDADILVCTTIIESGLDIPRVN 906

Query: 550  TIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQ 609
            TI+++D  +FGL+QLYQLRGRVGRA  +A+A+L YP +  LSD A +RL A++E  +LG 
Sbjct: 907  TILIEDAHRFGLSQLYQLRGRVGRAGIQAHAWLFYPKQRELSDAARQRLRAIQEFTQLGS 966

Query: 610  GFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQV 669
            G+QLA RDM IRG G + G +Q+G +  +G DL+ EML E++ ++    +  V     QV
Sbjct: 967  GYQLAMRDMEIRGVGNLLGAEQSGQMDVIGFDLYMEMLEEAIREIRGQEIPKV--EDTQV 1024

Query: 670  DININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLLK 729
            D+N+   +P+ YI  L+  M        V  K  + L Q       +YG  P P   LL+
Sbjct: 1025 DLNLTAFIPATYIPDLDQKMSAYRAVATV--KSKYELKQIAAEWTDRYGTIPVPASQLLR 1082

Query: 730  KLYLRRMAADIGINRIYSSGKT-VFMKANITKKVFKMMTDSMT 771
             + L+++A ++G +RI    K  + ++  + +  + ++ +++T
Sbjct: 1083 VMELKQLAKNLGFSRIKPENKQHIVLETPMEEPAWNLLAENLT 1125


>I4IK85_MICAE (tr|I4IK85) Transcription-repair-coupling factor OS=Microcystis
            aeruginosa PCC 9701 GN=mfd PE=4 SV=1
          Length = 1160

 Score =  556 bits (1434), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 295/650 (45%), Positives = 429/650 (66%), Gaps = 17/650 (2%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSA--EPTEYVFIEYADGMAKLPVKQ 188
            S +VD   LR  D+VVHK  GIG FI ++      S   +  +Y+ I+YADG+ ++P   
Sbjct: 479  SVQVDVNKLRPLDFVVHKHHGIGQFIKLEKQESTISGIVQGRDYLVIKYADGLLRVPADS 538

Query: 189  SSKM-LYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRR 247
               +  YR+     N++P+ L K++  + WE  K + + +++K+ VDL+ +Y  R ++  
Sbjct: 539  VDNLSRYRH---TGNQEPE-LHKISGKA-WEATKARVRKSVKKLAVDLINIYAQRSQKSG 593

Query: 248  PPYP-KSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVAL 306
              YP  +P   E    FPY+PT DQ +A  DV++DL E + PMDRL+CGDVGFGKTEVA+
Sbjct: 594  FAYPMDNPWQRELEDSFPYQPTADQLKAIQDVKRDL-ESDRPMDRLVCGDVGFGKTEVAI 652

Query: 307  RAI-RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLE 365
            RAI + V +  KQ  +LAPT +L +QH+  + ERFA YP I VGLL+RF+T +EK++ ++
Sbjct: 653  RAIFKAVTTGHKQVALLAPTTILTQQHYHTLKERFAPYP-INVGLLNRFRTNSEKKDIVQ 711

Query: 366  SIKSGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSAT 425
             +K+GELDI+VGT  LL   V + +LGLLV+DEEQRFGV QKEKI  FK+++DVLTLSAT
Sbjct: 712  RLKTGELDIVVGTQLLLSKAVEFKDLGLLVIDEEQRFGVNQKEKIKAFKSNIDVLTLSAT 771

Query: 426  PIPRTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLP 485
            PIPRTLY++L+G R+ SLITTPPP R PI+THLSS++ + + +AI+ ELDRGGQ+FYV+P
Sbjct: 772  PIPRTLYMSLSGVREMSLITTPPPSRRPIQTHLSSYNSDVIRTAIRNELDRGGQIFYVVP 831

Query: 486  RIKGLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDI 545
            RI+G+EE    ++   P   IAIGHG+    +LE TM  F  GE  IL+ T IVESGLDI
Sbjct: 832  RIEGIEEKAAAIQGMIPGARIAIGHGRMDESELETTMLAFNNGEADILVCTTIVESGLDI 891

Query: 546  QNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECR 605
               NTII++D Q+FGLAQLYQLRGRVGR+  +A+A+LLYP K  L++ A ERL A++E  
Sbjct: 892  PRVNTIIIEDAQKFGLAQLYQLRGRVGRSGVQAHAWLLYPAKAELTETARERLKAIQEFT 951

Query: 606  ELGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYH 665
            +LG G+QLA RD+ IRG G + G +Q+G +  +G DL+ EML E+L +++   +  V   
Sbjct: 952  QLGSGYQLATRDLEIRGAGNLLGAEQSGQMEAIGFDLYMEMLQEALREIQGQEIPQV--E 1009

Query: 666  SVQVDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPME 725
              Q+D+ +   +P++YI+ LE  M++         +   +L Q   +L  +YG  P P+ 
Sbjct: 1010 DTQIDLKLTAFIPNDYISDLEQKMDVYRAIATANSQK--ALGQIAADLVDRYGAIPAPVA 1067

Query: 726  VLLKKLYLRRMAADIGINRIYSSGKT-VFMKANITKKVFKMMTDSMTSDI 774
             L K + L+ +A  +G +RI   GK  + ++  + +  +K++ + +   I
Sbjct: 1068 QLFKVIELKHLAKSLGFSRIKPDGKQHIILETPMEEPAWKLLQEHLPQHI 1117


>K9X4X0_9NOST (tr|K9X4X0) Transcription-repair coupling factor Mfd
            OS=Cylindrospermum stagnale PCC 7417 GN=Cylst_5724 PE=4
            SV=1
          Length = 1161

 Score =  556 bits (1432), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 293/646 (45%), Positives = 418/646 (64%), Gaps = 14/646 (2%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S +VDP  LR GDYVVH+  GIG F+  K++    + E  +Y+ ++YADG+ ++   Q  
Sbjct: 483  SKQVDPNKLRPGDYVVHRSHGIGKFV--KLESLTINDETRDYLVVQYADGLLRVAADQVG 540

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
              L R+   N +K P+ L K++  + W+  K K + AI+K+ VDL++LY  R +Q+   Y
Sbjct: 541  S-LSRFRT-NGDKAPE-LHKMSGKA-WDNTKNKVRKAIKKLAVDLLKLYAARSQQQGFAY 596

Query: 251  PKS-PAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
            P   P   E    FPY+PT DQ +A  DV++D+ E + PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 597  PADMPWQEELEDSFPYQPTTDQLKAVQDVKRDM-ESDRPMDRLVCGDVGFGKTEVAIRAI 655

Query: 310  RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKS 369
               V+A KQ  +LAPT +L +QH+  + ERFA YP + VGLL+RF++  E+ +  + + +
Sbjct: 656  FKAVTAGKQVALLAPTTILTQQHYHTLKERFAPYP-VNVGLLNRFRSAEERRDIQKRLAT 714

Query: 370  GELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPR 429
            GELDI+VGTH LLG  V + +LGLLVVDEEQRFGV QKEKI + KT VDVLTLSATPIPR
Sbjct: 715  GELDIVVGTHQLLGKGVQFRDLGLLVVDEEQRFGVNQKEKIKSLKTQVDVLTLSATPIPR 774

Query: 430  TLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKG 489
            TLY++++G R+ SLITTPPP R PI+THL+  + E V SAI+ ELDRGGQVFYV+PR++G
Sbjct: 775  TLYMSMSGIREMSLITTPPPSRRPIQTHLAPLNPEIVRSAIRQELDRGGQVFYVVPRVEG 834

Query: 490  LEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNAN 549
            +EE    L E  P    AI HG+    +LE TM  F+  E  IL+ T I+ESGLDI   N
Sbjct: 835  IEETTANLREMIPGGRFAIAHGQMDESELESTMLTFSSSEADILVCTTIIESGLDIPRVN 894

Query: 550  TIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQ 609
            TI+++D  +FGLAQLYQLRGRVGRA  +A+A+L YP + +LSD A +RL A++E  +LG 
Sbjct: 895  TILIEDAHRFGLAQLYQLRGRVGRAGIQAHAWLFYPKQRVLSDAARQRLRAIQEFTQLGS 954

Query: 610  GFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQV 669
            G+QLA RDM IRG G + G +Q+G +  +G DL+ EML E++ ++    +  V     Q+
Sbjct: 955  GYQLAMRDMEIRGVGNLLGAEQSGQMDAIGFDLYMEMLEEAIREIRGQEIPKV--DDTQI 1012

Query: 670  DININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLLK 729
            D+N+   +P++YI  L+  M           K    L Q       ++G  P P   LL+
Sbjct: 1013 DLNLTAFIPADYITDLDQKMSAYRAV--ATAKSKGELKQIAAEWSDRFGTIPVPANQLLR 1070

Query: 730  KLYLRRMAADIGINRIYSSGKT-VFMKANITKKVFKMMTDSMTSDI 774
             + L+++   +G +RI    K  V ++  + +  + ++  +++ ++
Sbjct: 1071 VMELKQLGKKLGFSRIKPENKQHVVLETPMAEPAWNLLAANLSENM 1116


>Q8YLT1_NOSS1 (tr|Q8YLT1) Transcriptional-repair coupling factor OS=Nostoc sp.
            (strain PCC 7120 / UTEX 2576) GN=all5215 PE=4 SV=1
          Length = 1185

 Score =  555 bits (1431), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 291/621 (46%), Positives = 403/621 (64%), Gaps = 13/621 (2%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S +VDP  LR GDYVVH+  GIG F+  K++    + E  +Y+ ++YADG+ ++   Q  
Sbjct: 505  SKQVDPNKLRQGDYVVHRSHGIGKFV--KLESLTINDETRDYIVVQYADGLLRVAADQVG 562

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
              L R+     +K P+ L K+   + W+  K + + AI+K+ VDL++LY  R +Q+   Y
Sbjct: 563  S-LSRFRTTG-DKAPE-LHKMTGKA-WDNTKNRVRKAIKKLAVDLLKLYAARSQQQGFAY 618

Query: 251  PKS-PAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
            P+  P   E    FPY+ T DQ +A  DV++D+ E + PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 619  PQDMPWQEEMEDSFPYQATTDQLKAVQDVKRDM-ESDRPMDRLVCGDVGFGKTEVAIRAI 677

Query: 310  RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKS 369
               V++ KQ  +LAPT +L +QH+  + ERF+ YP + VGLL+RF+T  E+    + + +
Sbjct: 678  FKAVTSGKQVALLAPTTILTQQHYHTLKERFSPYP-VNVGLLNRFRTAEERRNIQKRLAT 736

Query: 370  GELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPR 429
            GELDI+VGTH LLG  V + +LGLLV+DEEQRFGV QKEKI + KT VDVLTLSATPIPR
Sbjct: 737  GELDIVVGTHQLLGKSVSFKDLGLLVIDEEQRFGVNQKEKIKSLKTQVDVLTLSATPIPR 796

Query: 430  TLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKG 489
            TLY++L+G R+ SLITTPPP R PIKTHLS  + E V SAI+ ELDRGGQVFYV+PR+ G
Sbjct: 797  TLYMSLSGIREMSLITTPPPTRRPIKTHLSPRNPESVRSAIRQELDRGGQVFYVVPRVDG 856

Query: 490  LEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNAN 549
            +EE+   L E  P    AI HG+    +LE TM  F+ G+  IL+ T I+ESGLDI   N
Sbjct: 857  IEEITANLREMVPGARFAIAHGQMDESELESTMLTFSNGDADILVCTTIIESGLDIPRVN 916

Query: 550  TIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQ 609
            TI+++D  +FGL+QLYQLRGRVGRA  +A+A+L YP +  LSD A +RL A++E  +LG 
Sbjct: 917  TILIEDAHRFGLSQLYQLRGRVGRAGIQAHAWLFYPKQRELSDAARQRLRAIQEFTQLGS 976

Query: 610  GFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQV 669
            G+QLA RDM IRG G + G +Q+G +  +G DL+ EML ES+ ++    +  V     Q+
Sbjct: 977  GYQLAMRDMEIRGVGNLLGAEQSGQMEAIGFDLYMEMLEESIREIRGQEIPKV--DDTQI 1034

Query: 670  DININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLLK 729
            D+N+   +P++YI  ++  M           KD   L Q       +YG  P     LL+
Sbjct: 1035 DLNLTAFIPADYITDIDQKMSAYRAVAAAKSKD--ELTQIAAEWSDRYGTLPVSANQLLR 1092

Query: 730  KLYLRRMAADIGINRIYSSGK 750
             + L+++A  +G +RI    K
Sbjct: 1093 VMELKQLAKKLGFSRIKPESK 1113


>I4HJZ0_MICAE (tr|I4HJZ0) Transcription-repair-coupling factor OS=Microcystis
            aeruginosa PCC 9808 GN=mfd PE=4 SV=1
          Length = 1160

 Score =  555 bits (1431), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 294/650 (45%), Positives = 428/650 (65%), Gaps = 17/650 (2%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSA--EPTEYVFIEYADGMAKLPVKQ 188
            S +VD   LR  D+VVHK  GIG FI ++      S   +  +Y+ I+YADG+ ++P   
Sbjct: 479  SVQVDVNKLRPLDFVVHKHHGIGQFIKLEKQESTISGVVQGRDYLVIKYADGLLRVPADS 538

Query: 189  SSKM-LYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRR 247
               +  YR+     N++P+ L K++  + WE  K + + +++K+ VDL+ +Y  R ++  
Sbjct: 539  VDNLSRYRH---TGNQEPE-LHKISGKA-WEATKARVRKSVKKLAVDLINIYAQRAQKSG 593

Query: 248  PPYP-KSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVAL 306
              YP  +P   E    FPY+PT DQ +A  DV++DL E + PMDRL+CGDVGFGKTEVA+
Sbjct: 594  FAYPMDNPWQRELEDSFPYQPTADQLKAIQDVKRDL-ESDRPMDRLVCGDVGFGKTEVAI 652

Query: 307  RAI-RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLE 365
            RAI + V +  KQ  +LAPT +L +QH+  + ERFA YP I VGLL+RF+T +EK++ ++
Sbjct: 653  RAIFKAVTTGHKQVALLAPTTILTQQHYHTLKERFAPYP-INVGLLNRFRTNSEKKDIVQ 711

Query: 366  SIKSGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSAT 425
             +K+GELDI+VGT  LL   V + +LGLLV+DEEQRFGV QKEKI  FK+++DVLTLSAT
Sbjct: 712  RLKTGELDIVVGTQLLLSKAVEFKDLGLLVIDEEQRFGVNQKEKIKAFKSNIDVLTLSAT 771

Query: 426  PIPRTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLP 485
            PIPRTLY++L+G R+ SLITTPPP R PI+THLSS++ + + +AI+ ELDRGGQ+FYV+P
Sbjct: 772  PIPRTLYMSLSGVREMSLITTPPPSRRPIQTHLSSYNSDAIRTAIRNELDRGGQIFYVVP 831

Query: 486  RIKGLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDI 545
            RI+G+EE    ++   P   I+IGHG+    +LE TM  F  GE  IL+ T IVESGLDI
Sbjct: 832  RIEGIEEKAAAIQGMIPGARISIGHGRMDEAELETTMLAFNNGEADILVCTTIVESGLDI 891

Query: 546  QNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECR 605
               NTII++D Q+FGLAQLYQLRGRVGR+  +A+A+LLYP K  L++ A ERL A++E  
Sbjct: 892  PRVNTIIIEDAQKFGLAQLYQLRGRVGRSGVQAHAWLLYPAKGELTETARERLKAIQEFT 951

Query: 606  ELGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYH 665
            +LG G+QLA RD+ IRG G + G +Q+G +  +G DL+ EML E+L +++   +  V   
Sbjct: 952  QLGSGYQLATRDLEIRGAGNLLGAEQSGQMEAIGFDLYMEMLQEALREIQGQEIPQV--E 1009

Query: 666  SVQVDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPME 725
              Q+D+ +   +P++YI+  E  M++         + T  L Q   +L  +YG  P P+ 
Sbjct: 1010 DTQIDLKLTAFIPNDYISDPEQKMDVYRAIATANSQKT--LGQIAADLVDRYGAIPSPVA 1067

Query: 726  VLLKKLYLRRMAADIGINRIYSSGKT-VFMKANITKKVFKMMTDSMTSDI 774
             L K + L+ +A  +G +RI   GK  + ++  + +  +K++ + +   I
Sbjct: 1068 QLFKVIELKHLAKSLGFSRIKPDGKQHIILETPMEEPAWKLLQEHLPQHI 1117


>I4HCG3_MICAE (tr|I4HCG3) Transcription-repair-coupling factor OS=Microcystis
            aeruginosa PCC 9807 GN=mfd PE=4 SV=1
          Length = 1160

 Score =  555 bits (1431), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 295/649 (45%), Positives = 425/649 (65%), Gaps = 15/649 (2%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSA--EPTEYVFIEYADGMAKLPVKQ 188
            S +VD   LR  D+VVHK  GIG FI ++      S   +  +Y+ I+YADG+ ++P   
Sbjct: 479  SVQVDVNKLRPLDFVVHKHHGIGQFIKLEKQESTISGVVQGRDYLVIKYADGLLRVPA-D 537

Query: 189  SSKMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRP 248
            S   L RY   +   +   L K++  + WE  K + + +++K+ VDL+ +Y  R ++   
Sbjct: 538  SLDNLSRY--RHTGSQAPELHKISGKA-WEATKARVRKSVKKLAVDLINIYAQRAQKSGF 594

Query: 249  PYP-KSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALR 307
             YP  +P   E    FPY+PT DQ +A  DV++DL E + PMDRL+CGDVGFGKTEVA+R
Sbjct: 595  AYPMDNPWQRELEDSFPYQPTADQLKAIQDVKRDL-ESDRPMDRLVCGDVGFGKTEVAIR 653

Query: 308  AI-RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLES 366
            AI + V +  KQ  +LAPT +L +QH+  + ERFA YP I VGLL+RF+T +EK++ ++ 
Sbjct: 654  AIFKAVTTGHKQVALLAPTTILTQQHYHTLKERFAPYP-INVGLLNRFRTNSEKKDIVQR 712

Query: 367  IKSGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATP 426
            +K+GELDI+VGT  LL   V + +LGLLV+DEEQRFGV QKEKI  FK+++DVLTLSATP
Sbjct: 713  LKTGELDIVVGTQLLLSKAVEFRDLGLLVIDEEQRFGVNQKEKIKAFKSNIDVLTLSATP 772

Query: 427  IPRTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPR 486
            IPRTLY++L+G R+ SLITTPPP R PI+THLSS++ + + +AI+ ELDRGGQ+FYV+PR
Sbjct: 773  IPRTLYMSLSGVREMSLITTPPPSRRPIQTHLSSYNSDAIRTAIRNELDRGGQIFYVVPR 832

Query: 487  IKGLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQ 546
            I+G+EE    ++   P   I+IGHG+    +LE TM  F  GE  IL+ T IVESGLDI 
Sbjct: 833  IEGIEEKAAAIQGMIPGARISIGHGRMDEAELETTMLAFNNGEADILVCTTIVESGLDIP 892

Query: 547  NANTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRE 606
              NTII++D Q+FGLAQLYQLRGRVGR+  +A+A+LLYP K  L++ A ERL A++E  +
Sbjct: 893  RVNTIIIEDAQKFGLAQLYQLRGRVGRSGVQAHAWLLYPAKGELTETARERLKAIQEFTQ 952

Query: 607  LGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHS 666
            LG G+QLA RDM IRG G + G +Q+G +  +G DL+ EML E+L +++   +  V    
Sbjct: 953  LGSGYQLATRDMEIRGAGNLLGAEQSGQMEAIGFDLYMEMLQEALREIQGQEIPQV--ED 1010

Query: 667  VQVDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEV 726
             Q+D+ +   +P++YI+  E  M++         + T  L Q   +L  +YG  P P+  
Sbjct: 1011 TQIDLKLTAFIPNDYISDPEQKMDVYRAIATANSQKT--LGQIAADLVDRYGAIPSPVAQ 1068

Query: 727  LLKKLYLRRMAADIGINRIYSSGKT-VFMKANITKKVFKMMTDSMTSDI 774
            L K + L+ +A  +G +RI   GK  + ++  + +  +K++ + +   I
Sbjct: 1069 LFKVIELKHLAKSLGFSRIKPDGKQHIILETPMEEPAWKLLQEHLPQHI 1117


>F5UL21_9CYAN (tr|F5UL21) Transcription-repair coupling factor OS=Microcoleus
            vaginatus FGP-2 GN=MicvaDRAFT_4990 PE=4 SV=1
          Length = 1191

 Score =  555 bits (1430), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 297/622 (47%), Positives = 412/622 (66%), Gaps = 15/622 (2%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S +VDP  L  GDYVVH++ G+G FI  K++      E  EY+ I+YADG  ++   Q  
Sbjct: 512  SKQVDPNKLSPGDYVVHRQHGVGKFI--KLERLTIDRETREYLLIQYADGTLRVAADQLG 569

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
              L R+    +  K   L+KL   + WEK KTK + A++K+ VDL+ LY  R KQ    +
Sbjct: 570  A-LSRFRTVGD--KVPDLNKLTGQT-WEKTKTKVRKAVKKLAVDLLNLYAKRAKQTGYAF 625

Query: 251  PKS-PAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
            P   P   E    FPY+PTPDQ +A  DV++D+ E + PMDRL+CGDVGFGKTEVALRAI
Sbjct: 626  PPDMPWQQELEDSFPYQPTPDQLKATQDVKRDM-EGDRPMDRLVCGDVGFGKTEVALRAI 684

Query: 310  RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKS 369
               V+A KQ  +LAPT +L +QH+  +SERF+ YP I+VGLL+RF+T+ E+ E  + + +
Sbjct: 685  FKAVTAGKQVALLAPTTILTQQHYHTLSERFSPYP-IEVGLLNRFRTETERREIHKRLAT 743

Query: 370  GELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPR 429
            GELD+IVGT ++L   + + +LGLLVVDEEQRFGVKQKE I   KT VDVLTL+ATPIPR
Sbjct: 744  GELDVIVGTQAVLSKAIKFRDLGLLVVDEEQRFGVKQKEAIKALKTEVDVLTLTATPIPR 803

Query: 430  TLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKG 489
            TLY++L+G R+ SLI+TPPP R PI+THL+ ++ E V SAI+ ELDRGGQVFYV+PRI+G
Sbjct: 804  TLYMSLSGIREMSLISTPPPSRRPIQTHLAPYNPEVVRSAIRQELDRGGQVFYVVPRIEG 863

Query: 490  LEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNAN 549
            ++E+   L+E  P   IAI HG+  + +LE  M  F+  +  IL+ T I+ESGLDI   N
Sbjct: 864  IDELAAQLQEMVPSARIAIAHGQMDASELESVMLTFSAADFDILVCTTIIESGLDIPRVN 923

Query: 550  TIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQ 609
            TI+++D Q+FGL QLYQLRGRVGRA  +A+A+L YP +N LSD A +RL A++E  +LG 
Sbjct: 924  TILIEDAQRFGLGQLYQLRGRVGRAGIQAHAWLFYPKQNKLSDAARQRLRAIQEFAQLGS 983

Query: 610  GFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQV 669
            G+QLA RDM IRG G + G +Q+G +  +G DL+ EML E++ +++   +  V     Q+
Sbjct: 984  GYQLAVRDMEIRGSGDVLGTEQSGQMEAIGFDLYAEMLEEAIREIKGQEIPKV--EDAQI 1041

Query: 670  DININPHLPSEYINHLENPMEIINEAERVAEKDT-WSLMQFTENLRRQYGKEPRPMEVLL 728
            D+ +   +P++YI  L+  M        VA  +T   L Q   +   +YG  P P + L+
Sbjct: 1042 DLTLTAFIPADYIADLDQKMSAYRS---VASANTPEELQQIQADWCDRYGPIPLPAQQLI 1098

Query: 729  KKLYLRRMAADIGINRIYSSGK 750
            + + L+++A  IG +RI    K
Sbjct: 1099 RVVELKQIAKKIGFSRIKPENK 1120


>K9YIQ1_CYASC (tr|K9YIQ1) Transcription-repair coupling factor OS=Cyanobacterium
            stanieri (strain ATCC 29140 / PCC 7202) GN=Cyast_0295
            PE=4 SV=1
          Length = 1151

 Score =  555 bits (1429), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 299/649 (46%), Positives = 432/649 (66%), Gaps = 21/649 (3%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S +VD   LR  D+VVHK  GIG FI ++    +      EY+ I+YADG+ ++P  ++S
Sbjct: 484  SKQVDLDKLRPKDFVVHKHHGIGQFIDLETLASR------EYLVIQYADGILRVPA-ENS 536

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
            ++L RY    + K PK + KL     W   K K + +I+K+ VDL++LY  R K     Y
Sbjct: 537  EVLSRY-RAIDGKHPK-IHKLAGKE-WNNIKNKARRSIKKLAVDLVKLYATRAKLTGFVY 593

Query: 251  PK-SPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
            P+ SP   E    FPYEPTPDQ +A  DV+ DL E + PMDRLICGDVGFGKTEVA+R I
Sbjct: 594  PEDSPWQRELEDSFPYEPTPDQLKATQDVKIDL-ESDRPMDRLICGDVGFGKTEVAIRTI 652

Query: 310  RCVVSA-KKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIK 368
              V++A  KQ   LAPT +L++QH+  + ERF+ YP I +GLL+RF++ +E++E ++ + 
Sbjct: 653  FKVITAGHKQVAFLAPTTILSQQHYHTLLERFSPYP-INIGLLNRFRSPSERKEIIQKLA 711

Query: 369  SGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIP 428
            +GELDI+VGTH LL   + Y +LGLLV+DEEQRFGV QKEKI   KTSVDVLTLSATPIP
Sbjct: 712  TGELDIVVGTHQLLSKTIKYKDLGLLVIDEEQRFGVNQKEKIKAMKTSVDVLTLSATPIP 771

Query: 429  RTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIK 488
            RTLY++++G R+ SLITTPPP R PIKTH+ +F++  + +AI+ ELDRGGQ+FYVLPRI+
Sbjct: 772  RTLYMSISGVREMSLITTPPPSRRPIKTHIGAFNEGIIRTAIRNELDRGGQIFYVLPRIE 831

Query: 489  GLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNA 548
            G+++V+E L+   P + I + HG+    +LE TM  F+ G+  +LI T I+ESGLDI   
Sbjct: 832  GMDKVVEMLQNMIPSLRIGVAHGQMPEGELESTMLGFSNGDADLLICTTIIESGLDIPRV 891

Query: 549  NTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELG 608
            NTIIV+D Q+FGLAQLYQLRGRVGR+  +A+A+LLYPD   LS++A +RL AL+E  +LG
Sbjct: 892  NTIIVEDAQKFGLAQLYQLRGRVGRSGIQAHAWLLYPDDVSLSEKARKRLRALQEFSQLG 951

Query: 609  QGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQ 668
             G+ LA RDM IRG G++ G +Q+G +  +G +++ EML E++ +++   +  V     Q
Sbjct: 952  SGYHLAMRDMEIRGVGSLLGAEQSGQMEAIGFEMYTEMLKEAIDEIQGQEIPTV--EDTQ 1009

Query: 669  VDININPHLPSEYINHLENPMEIINEAERVA-EKDTWSLMQFTENLRRQYGKEPRPMEVL 727
            +D+N+   +P+ YI  +E  M+       V+ E+D   + Q   +   +YG+ P P + L
Sbjct: 1010 IDLNLTAFIPNRYIADMEQKMDAYRAVATVSCERD---VKQIERDWLDRYGEIPEPAKQL 1066

Query: 728  LKKLYLRRMAADIGINRIYSSGK-TVFMKANITKKVFKMMTDSMTSDIY 775
            L+   L+  A  IG +RI   GK  + ++  + +  + ++ + + S ++
Sbjct: 1067 LQVADLKYKAKSIGFSRIKPEGKQNIILETPMLEPAWNLLLEKLPSHLH 1115


>I4FDU4_MICAE (tr|I4FDU4) Transcription-repair-coupling factor OS=Microcystis
            aeruginosa PCC 9432 GN=mfd PE=4 SV=1
          Length = 1169

 Score =  554 bits (1428), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 294/650 (45%), Positives = 428/650 (65%), Gaps = 17/650 (2%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSA--EPTEYVFIEYADGMAKLPVKQ 188
            S +VD   LR  D+VVHK  GIG FI ++      S   +  +Y+ I+YADG+ ++P   
Sbjct: 488  SVQVDVNKLRPLDFVVHKHHGIGQFIKLEKQESTISGVVQGRDYLVIKYADGLLRVPADS 547

Query: 189  SSKM-LYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRR 247
               +  YR+     N++P+ L K++  + WE  K + + +++K+ VDL+ +Y  R ++  
Sbjct: 548  LDNLSRYRH---TGNQEPE-LHKISGKA-WEATKARVRKSVKKLAVDLINIYAQRAQKSG 602

Query: 248  PPYP-KSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVAL 306
              YP  +P   E    FPY+PT DQ +A  DV++DL E + PMDRL+CGDVGFGKTEVA+
Sbjct: 603  FAYPMDNPWQRELEDSFPYQPTADQLKAIQDVKRDL-ESDRPMDRLVCGDVGFGKTEVAI 661

Query: 307  RAI-RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLE 365
            RAI + V +  KQ  +LAPT +L +QH+  + ERFA YP I VGLL+RF+T +EK++ ++
Sbjct: 662  RAIFKAVTTGHKQVALLAPTTILTQQHYHTLKERFAPYP-INVGLLNRFRTNSEKKDIVQ 720

Query: 366  SIKSGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSAT 425
             +K+GELDI+VGT  LL   V + +LGLLV+DEEQRFGV QKEKI  FK+++DVLTLSAT
Sbjct: 721  RLKTGELDIVVGTQLLLSKAVEFKDLGLLVIDEEQRFGVNQKEKIKAFKSNIDVLTLSAT 780

Query: 426  PIPRTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLP 485
            PIPRTLY++L+G R+ SLITTPPP R PI+THLSS++ + + +AI+ ELDRGGQ+FYV+P
Sbjct: 781  PIPRTLYMSLSGVREMSLITTPPPSRRPIQTHLSSYNSDVIRTAIRNELDRGGQIFYVVP 840

Query: 486  RIKGLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDI 545
            RI+G+EE    ++   P   I+IGHG+    +LE TM  F  GE  IL+ T IVESGLDI
Sbjct: 841  RIEGIEEKAAAIQGMIPGARISIGHGRMDESELETTMLAFNNGEADILVCTTIVESGLDI 900

Query: 546  QNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECR 605
               NTII++D Q+FGLAQLYQLRGRVGR+  +A+A+LLYP K  L++ A ERL A++E  
Sbjct: 901  PRVNTIIIEDAQKFGLAQLYQLRGRVGRSGVQAHAWLLYPAKGELTETARERLKAIQEFT 960

Query: 606  ELGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYH 665
            +LG G+QLA RD+ IRG G + G +Q+G +  +G DL+ EML E+L +++   +  V   
Sbjct: 961  QLGSGYQLATRDLEIRGAGNLLGAEQSGQMEAIGFDLYMEMLQEALREIQGQEIPQV--E 1018

Query: 666  SVQVDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPME 725
              Q+D+ +   +P++YI+  E  M++         + T  L Q   +L  +YG  P P+ 
Sbjct: 1019 DTQIDLKLTAFIPNDYISDPEQKMDVYRAIATANSQKT--LGQIAADLVDRYGAIPSPVA 1076

Query: 726  VLLKKLYLRRMAADIGINRIYSSGKT-VFMKANITKKVFKMMTDSMTSDI 774
             L K + L+ +A  +G +RI   GK  + ++  + +  +K++ + +   I
Sbjct: 1077 QLFKVIELKHLAKSLGFSRIKPDGKQHIILETPMEEPAWKLLQEHLPQHI 1126


>L7E4R1_MICAE (tr|L7E4R1) Transcription-repair coupling factor OS=Microcystis
            aeruginosa TAIHU98 GN=mfd PE=4 SV=1
          Length = 1169

 Score =  553 bits (1426), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 293/650 (45%), Positives = 428/650 (65%), Gaps = 17/650 (2%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSA--EPTEYVFIEYADGMAKLPVKQ 188
            S +VD   LR  D+VVHK  GIG FI ++      S   +  +Y+ I+YADG+ ++P   
Sbjct: 488  SVQVDVNKLRPLDFVVHKHHGIGQFIKLEKQESTISGVVQGRDYLVIKYADGLLRVPADS 547

Query: 189  SSKM-LYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRR 247
               +  YR+     N++P+ L K++  + WE  K + + +++K+ VDL+ +Y  R ++  
Sbjct: 548  VDNLSRYRH---TGNQEPE-LHKISGKA-WEATKARVRKSVKKLAVDLINIYAQRAQKSG 602

Query: 248  PPYP-KSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVAL 306
              YP  +P   E    FPY+PT DQ +A  DV++DL E + PMDRL+CGDVGFGKTEVA+
Sbjct: 603  FAYPMDNPWQRELEDSFPYQPTADQLKAIQDVKRDL-ESDRPMDRLVCGDVGFGKTEVAI 661

Query: 307  RAI-RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLE 365
            RAI + V +  KQ  +LAPT +L +QH+  + ERFA YP I VGLL+RF+T +EK++ ++
Sbjct: 662  RAIFKAVTTGHKQVALLAPTTILTQQHYHTLKERFAPYP-INVGLLNRFRTNSEKKDIVQ 720

Query: 366  SIKSGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSAT 425
             +K+GELDI+VGT  LL   V + +LGLLV+DEEQRFGV QKEKI  FK+++DVLTL+AT
Sbjct: 721  RLKTGELDIVVGTQLLLSKAVEFKDLGLLVIDEEQRFGVNQKEKIKAFKSNIDVLTLTAT 780

Query: 426  PIPRTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLP 485
            PIPRTLY++L+G R+ SLITTPPP R PI+THLSS++ + + +AI+ ELDRGGQ+FYV+P
Sbjct: 781  PIPRTLYMSLSGVREMSLITTPPPSRRPIQTHLSSYNSDVIRTAIRNELDRGGQIFYVVP 840

Query: 486  RIKGLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDI 545
            RI+G+EE    ++   P   I+IGHG+    +LE TM  F  GE  IL+ T IVESGLDI
Sbjct: 841  RIEGIEEKAAAIQGMIPGARISIGHGRMDESELETTMLAFNNGEADILVCTTIVESGLDI 900

Query: 546  QNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECR 605
               NTII++D Q+FGLAQLYQLRGRVGR+  +A+A+LLYP K  L++ A ERL A++E  
Sbjct: 901  PRVNTIIIEDAQKFGLAQLYQLRGRVGRSGVQAHAWLLYPAKGELTETARERLKAIQEFT 960

Query: 606  ELGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYH 665
            +LG G+QLA RD+ IRG G + G +Q+G +  +G DL+ EML E+L +++   +  V   
Sbjct: 961  QLGSGYQLATRDLEIRGAGNLLGAEQSGQMEAIGFDLYMEMLQEALREIQGQEIPQV--E 1018

Query: 666  SVQVDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPME 725
              Q+D+ +   +P++YI+  E  M++         + T  L Q   +L  +YG  P P+ 
Sbjct: 1019 DTQIDLKLTAFIPNDYISDPEQKMDVYRAIATANSQKT--LGQIAADLVDRYGAIPSPVA 1076

Query: 726  VLLKKLYLRRMAADIGINRIYSSGKT-VFMKANITKKVFKMMTDSMTSDI 774
             L K + L+ +A  +G +RI   GK  + ++  + +  +K++ + +   I
Sbjct: 1077 QLFKVIELKHLAKSLGFSRIKPDGKQHIILETPMEEPAWKLLQEHLPQHI 1126


>I4G3Q4_MICAE (tr|I4G3Q4) Transcription-repair-coupling factor OS=Microcystis
            aeruginosa PCC 9443 GN=mfd PE=4 SV=1
          Length = 1160

 Score =  553 bits (1425), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 294/650 (45%), Positives = 421/650 (64%), Gaps = 17/650 (2%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSA--EPTEYVFIEYADGMAKLPVKQ 188
            S +VD   LR  D+VVHK  GIG FI ++      S   +  +Y+ I+YADG+ ++P   
Sbjct: 479  SVQVDVNKLRPLDFVVHKHHGIGQFIKLEKQESTISGVVQGRDYLVIKYADGLLRVPADS 538

Query: 189  SSKM-LYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRR 247
               +  YR+    E +  K   K      WE  K + + +++K+ VDL+ +Y  R ++  
Sbjct: 539  LDNLSRYRHTGSQEPELHKISGK-----AWEATKARVRKSVKKLAVDLINIYAQRAQKSG 593

Query: 248  PPYP-KSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVAL 306
              YP  +P   E    FPY+PT DQ +A  DV++DL E + PMDRL+CGDVGFGKTEVA+
Sbjct: 594  FAYPMDNPWQRELEDSFPYQPTADQLKAIQDVKRDL-ESDRPMDRLVCGDVGFGKTEVAI 652

Query: 307  RAI-RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLE 365
            RAI + V +  KQ  +LAPT +L +QH+  + ERFA YP I VGLL+RF+T +EK++ ++
Sbjct: 653  RAIFKAVTTGHKQVALLAPTTILTQQHYHTLKERFAPYP-INVGLLNRFRTNSEKKDIVQ 711

Query: 366  SIKSGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSAT 425
             +K+GELDI+VGT  LL   V + +LGLLV+DEEQRFGV QKEKI  FK+++DVLTLSAT
Sbjct: 712  RLKTGELDIVVGTQLLLSKAVEFRDLGLLVIDEEQRFGVNQKEKIKAFKSNIDVLTLSAT 771

Query: 426  PIPRTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLP 485
            PIPRTLY++L+G R+ SLITTPPP R PI+THLSS++ + + +AI+ ELDRGGQ+FYV+P
Sbjct: 772  PIPRTLYMSLSGVREMSLITTPPPSRRPIQTHLSSYNSDAIRTAIRNELDRGGQIFYVVP 831

Query: 486  RIKGLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDI 545
            RI+G+EE    ++   P   IAIGHG+    +LE TM  F  GE  IL+ T IVESGLDI
Sbjct: 832  RIEGIEEKAAAIQGMIPGARIAIGHGRMDEAELETTMLAFNNGEADILVCTTIVESGLDI 891

Query: 546  QNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECR 605
               NTII++D Q+FGLAQLYQLRGRVGR+  +A+A+LLYP K  L++ A ERL A++E  
Sbjct: 892  PRVNTIIIEDAQKFGLAQLYQLRGRVGRSGVQAHAWLLYPAKGELTETARERLKAIQEFT 951

Query: 606  ELGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYH 665
            +LG G+QLA RD+ IRG G + G +Q+G +  +G DL+ EML E+L +++   +  V   
Sbjct: 952  QLGSGYQLATRDLEIRGAGNLLGAEQSGQMEAIGFDLYMEMLQEALREIQGQEIPQV--E 1009

Query: 666  SVQVDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPME 725
              Q+D+ +   +P++YI+  E  M++         + T  L Q   +L  +YG  P P+ 
Sbjct: 1010 DTQIDLKLTAFIPNDYISDPEQKMDVYRAIATANSQKT--LGQIAADLVDRYGAIPSPVA 1067

Query: 726  VLLKKLYLRRMAADIGINRIYSSGKT-VFMKANITKKVFKMMTDSMTSDI 774
             L K + L+ +A  +G  RI   GK  + ++  + +  +K++ + +   I
Sbjct: 1068 QLFKVIELKHLAKSLGFLRIKPDGKQHIILETPMEEPAWKLLQEHLPQHI 1117


>A0ZKE2_NODSP (tr|A0ZKE2) Transcriptional-repair coupling factor OS=Nodularia
            spumigena CCY9414 GN=N9414_14513 PE=4 SV=1
          Length = 1164

 Score =  553 bits (1424), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 293/621 (47%), Positives = 406/621 (65%), Gaps = 13/621 (2%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S +VDP  LR GDYVVH+  G+G F+  K++    + E  +Y+ ++YADG+ ++   Q  
Sbjct: 486  SKQVDPNKLRQGDYVVHRSHGVGKFV--KLESLTINHETRDYLVVQYADGILRVAADQVG 543

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
              L R+     +K P+ L K+   + WE  K + + AI+K+ VDL++LY  R KQ    Y
Sbjct: 544  S-LSRFRRTG-DKAPE-LHKMTGKA-WENTKNRVRKAIKKLAVDLLKLYAARSKQEGYTY 599

Query: 251  PKS-PAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
            P+  P   E    FPY+ T DQ +A  DV++D+ E + PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 600  PQDMPWQEEMEDSFPYQATTDQLKAVQDVKRDM-ESDRPMDRLVCGDVGFGKTEVAIRAI 658

Query: 310  RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKS 369
               V++ KQ  +LAPT +L +QH+  + ERFA YP + +GLL+RF++  E+    + + +
Sbjct: 659  FKAVTSGKQVALLAPTTILTQQHYHTLKERFAPYP-VNIGLLNRFRSAEERRTIQKRLAT 717

Query: 370  GELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPR 429
            GELDI+VGTH LLG  V + +LGLLVVDEEQRFGV QKEKI + KT VDVLTLSATPIPR
Sbjct: 718  GELDIVVGTHQLLGKNVSFRDLGLLVVDEEQRFGVNQKEKIKSLKTQVDVLTLSATPIPR 777

Query: 430  TLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKG 489
            TLY++L+G R+ SLITTPPP R PIKTHL+  S E V SAI+ ELDRGGQVFYV+PR++G
Sbjct: 778  TLYMSLSGIREMSLITTPPPTRRPIKTHLAPLSPEIVRSAIRQELDRGGQVFYVVPRVEG 837

Query: 490  LEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNAN 549
            +EE+   L E  P  + AI HG+    +LE TM  F+ G+  IL+ T I+ESGLDI   N
Sbjct: 838  IEELTANLREMIPGGKFAIAHGRLDESELESTMLTFSNGDADILVCTTIIESGLDIPRVN 897

Query: 550  TIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQ 609
            TI+++D  +FGL+QLYQLRGRVGRA  +A+A+L YP +  LSD A +RL A++E  +LG 
Sbjct: 898  TILIEDAHRFGLSQLYQLRGRVGRAGIQAHAWLFYPKQRTLSDAARQRLRAIQEFTQLGS 957

Query: 610  GFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQV 669
            G+QLA RDM IRG G + G +Q+G +  +G DL+ EML E++ ++    +  V     Q+
Sbjct: 958  GYQLAMRDMEIRGVGNLLGAEQSGQMEAIGFDLYMEMLEEAIREIRGQEIPKV--DETQI 1015

Query: 670  DININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLLK 729
            D+N+   +PS+YI  ++  M         A K +  L   T     +YG  P P   LL+
Sbjct: 1016 DLNLTAFIPSDYIPDVDQKMSAYRAV--AAAKSSEELKYITAEWGDRYGALPVPANQLLR 1073

Query: 730  KLYLRRMAADIGINRIYSSGK 750
             + L+++A  +G +RI    K
Sbjct: 1074 VMQLKQLAKKLGFSRIKPENK 1094


>K9YSA2_DACSA (tr|K9YSA2) Transcription-repair coupling factor Mfd
            OS=Dactylococcopsis salina PCC 8305 GN=Dacsa_1113 PE=4
            SV=1
          Length = 1160

 Score =  552 bits (1423), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 295/621 (47%), Positives = 406/621 (65%), Gaps = 17/621 (2%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S +VD   LR  DYVVH++ GIG F+ ++      S E  EY+ +EYADG+ ++P   S 
Sbjct: 485  SKQVDLNKLRPNDYVVHRQHGIGKFLRLE------SWETREYLVVEYADGLLRVPAD-SL 537

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
              L RY    E K    L++++  S W+  K K + A++K+ VDL++LY  R +     Y
Sbjct: 538  DSLSRYRHLGEGKP--QLNRMSGKS-WQNTKNKVEKAVKKVAVDLLDLYAKRSQLSGYAY 594

Query: 251  PKSPAMA-EFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
            P+      E    FPY+ TPDQ +A  DV++DL E + PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 595  PQDTVWQQELEDSFPYQATPDQLKAVQDVKRDL-ESDRPMDRLVCGDVGFGKTEVAIRAI 653

Query: 310  RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKS 369
              +V + KQ   LAPT +L +QH+  + ERFA YP I +GLL+RF+T  E+++ L+ + +
Sbjct: 654  FKIVMSGKQIAFLAPTTILTQQHYHTLKERFAPYP-INIGLLNRFRTSNERKDILKRLAT 712

Query: 370  GELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPR 429
            GELDI+VGTH LL   V Y +LG+LV+DEEQRFGV QKEKI   KT VDVLTL+ATPIPR
Sbjct: 713  GELDIVVGTHQLLNKSVKYKDLGMLVIDEEQRFGVNQKEKIKAMKTEVDVLTLTATPIPR 772

Query: 430  TLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKG 489
            TLY++L+G R+ SLITTPPP R PIKTHLS +  E + +AI+ ELDRGGQVFYV+PR++G
Sbjct: 773  TLYMSLSGIREMSLITTPPPSRRPIKTHLSPYDTEAIRTAIRNELDRGGQVFYVVPRVEG 832

Query: 490  LEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNAN 549
            +EE    L E  P   I+IGHG+    +LE TM  F  G+  IL+ T I+ESGLDI   N
Sbjct: 833  IEETAGKLREMVPGARISIGHGQMEEAELESTMLTFNNGDADILVCTTIIESGLDIPRVN 892

Query: 550  TIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQ 609
            TI+V+D Q+FGL+QLYQLRGRVGR+  +A+A+LLYP ++ LSD A +RL AL+E  +LG 
Sbjct: 893  TIVVEDSQKFGLSQLYQLRGRVGRSGVQAHAWLLYPKQSSLSDTAKKRLRALQEFTQLGS 952

Query: 610  GFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQV 669
            G+QLA RD+ IRG G + G +Q+G +  VG DL+  ML E++ +V+   +  V     Q+
Sbjct: 953  GYQLAMRDLEIRGVGELLGAKQSGQMNAVGFDLYMSMLQEAIQEVQGQDIPQV--EDTQI 1010

Query: 670  DININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLLK 729
            D+ +   +PS YI   +  M+          K    L Q   + R +YG+ P P+  LL+
Sbjct: 1011 DLKLTAFVPSNYITDPDQKMDAYRTVTMANSKK--ELDQIRNDWRDRYGELPAPVNQLLQ 1068

Query: 730  KLYLRRMAADIGINRIYSSGK 750
             + L+++   +G +RI   GK
Sbjct: 1069 IMELKQITKSLGFSRIKPEGK 1089


>B0JXS5_MICAN (tr|B0JXS5) Transcription-repair coupling factor OS=Microcystis
            aeruginosa (strain NIES-843) GN=MAE_20800 PE=4 SV=1
          Length = 1160

 Score =  552 bits (1423), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 293/650 (45%), Positives = 428/650 (65%), Gaps = 17/650 (2%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSA--EPTEYVFIEYADGMAKLPVKQ 188
            S +VD   LR  D+VVHK  GIG FI ++      S   +  +Y+ I+YADG+ ++P   
Sbjct: 479  SVQVDVNKLRPLDFVVHKHHGIGQFIKLEKQESTISGVVQGRDYLVIKYADGLLRVPADS 538

Query: 189  SSKM-LYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRR 247
               +  YR+     N++P+ L K++  + WE  K + + +++K+ VDL+ +Y  R ++  
Sbjct: 539  VDNLSRYRH---TGNQEPE-LHKISGKA-WEATKARVRKSVKKLAVDLINIYAQRAQKSG 593

Query: 248  PPYP-KSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVAL 306
              YP  +P   E    FPY+PT DQ +A  DV++DL E + PMDRL+CGDVGFGKTEVA+
Sbjct: 594  FAYPMDNPWQRELEDSFPYQPTADQLKAIQDVKRDL-ESDRPMDRLVCGDVGFGKTEVAI 652

Query: 307  RAI-RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLE 365
            RAI + V +  KQ  +LAPT +L +QH+  + ERFA YP I VGLL+RF+T +EK++ ++
Sbjct: 653  RAIFKAVTTGHKQVALLAPTTILTQQHYHTLKERFAPYP-INVGLLNRFRTNSEKKDIVQ 711

Query: 366  SIKSGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSAT 425
             +K+GELDI+VGT  LL   V + +LGLLV+DEEQRFGV QKEKI  FK+++DVLTL+AT
Sbjct: 712  RLKTGELDIVVGTQLLLSKAVEFKDLGLLVIDEEQRFGVNQKEKIKAFKSNIDVLTLTAT 771

Query: 426  PIPRTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLP 485
            PIPRTLY++L+G R+ SLITTPPP R PI+THLSS++ + + +AI+ ELDRGGQ+FYV+P
Sbjct: 772  PIPRTLYMSLSGVREMSLITTPPPSRRPIQTHLSSYNSDVIRTAIRNELDRGGQIFYVVP 831

Query: 486  RIKGLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDI 545
            RI+G+EE    ++   P   IAIGHG+    +LE TM  F  GE  IL+ T IVESGLDI
Sbjct: 832  RIEGIEEKAAAIQGMIPGARIAIGHGRMDEAELETTMLAFNNGEADILVCTTIVESGLDI 891

Query: 546  QNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECR 605
               NTII++D Q+FGLAQLYQLRGRVGR+  +A+A+LLYP K  L++ A ERL A++E  
Sbjct: 892  PRVNTIIIEDAQKFGLAQLYQLRGRVGRSGVQAHAWLLYPAKAELTETARERLKAIQEFT 951

Query: 606  ELGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYH 665
            +LG G+QLA RD+ IRG G + G +Q+G +  +G DL+ EML E+L +++   +  V   
Sbjct: 952  QLGSGYQLATRDLEIRGAGNLLGAEQSGQMEAIGFDLYMEMLQEALREIQGQEIPQV--E 1009

Query: 666  SVQVDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPME 725
              Q+D+ +   +P++YI+  E  M++         +   +L Q   +L  +YG  P P+ 
Sbjct: 1010 DTQIDLKLTAFIPNDYISDPEQKMDVYRAIATANSQK--NLGQIAADLVDRYGAIPSPVA 1067

Query: 726  VLLKKLYLRRMAADIGINRIYSSGKT-VFMKANITKKVFKMMTDSMTSDI 774
             L K + L+ +A  +G +RI   GK  + ++  + +  +K++ + +   I
Sbjct: 1068 QLFKVIELKHLAKSLGFSRIKPDGKQHIILETPMEEPAWKLLQEHLPQHI 1117


>L8NUS3_MICAE (tr|L8NUS3) Transcription-repair coupling factor OS=Microcystis
            aeruginosa DIANCHI905 GN=mfd PE=4 SV=1
          Length = 1169

 Score =  552 bits (1423), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 294/652 (45%), Positives = 424/652 (65%), Gaps = 21/652 (3%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSA--EPTEYVFIEYADGMAKLPVKQ 188
            S +VD   LR  D+VVHK  GIG FI ++      S   +  +Y+ I+YADG+ ++P   
Sbjct: 488  SVQVDVNKLRPLDFVVHKHHGIGQFIKLEKQESTISGVVQGRDYLVIKYADGLLRVPADS 547

Query: 189  SSKM-LYRYCLPNENKKPKALSKLNDTS--VWEKRKTKGKVAIQKMVVDLMELYLHRLKQ 245
               +  YR+    E        +L++ S   WE  K + + +++K+ VDL+ +Y  R ++
Sbjct: 548  LDNLSRYRHTGTQE-------PELHNISGKAWEATKARVRKSVKKLAVDLINIYAQRAQK 600

Query: 246  RRPPYP-KSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEV 304
                YP  +P   E    FPY+PT DQ +A  DV++DL E + PMDRL+CGDVGFGKTEV
Sbjct: 601  SGFAYPMDNPWQRELEDSFPYQPTADQLKAIQDVKRDL-ESDRPMDRLVCGDVGFGKTEV 659

Query: 305  ALRAI-RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEH 363
            A+RAI + V +  KQ  +LAPT +L +QH+  + ERFA YP I VGLL+RF+T +EK++ 
Sbjct: 660  AIRAIFKAVTTGHKQVALLAPTTILTQQHYHTLKERFAPYP-INVGLLNRFRTNSEKKDI 718

Query: 364  LESIKSGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLS 423
            ++ +K+GELDI+VGT  LL   V + +LGLLV+DEEQRFGV QKEKI  FK+++DVLTLS
Sbjct: 719  VQRLKTGELDIVVGTQLLLSKAVEFRDLGLLVIDEEQRFGVNQKEKIKAFKSNIDVLTLS 778

Query: 424  ATPIPRTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYV 483
            ATPIPRTLY++L+G R+ SLITTPPP R PI+THLSS++ + + +AI+ ELDRGGQ+FYV
Sbjct: 779  ATPIPRTLYMSLSGVREMSLITTPPPSRRPIQTHLSSYNSDVIRTAIRNELDRGGQIFYV 838

Query: 484  LPRIKGLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGL 543
            +PRI+G+EE    ++   P   IAIGHG+    +LE TM  F  GE  IL+ T IVESGL
Sbjct: 839  VPRIEGIEEKAAVIQGMIPGARIAIGHGRMDEAELETTMLAFNNGEADILVCTTIVESGL 898

Query: 544  DIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEE 603
            DI   NTII++D Q+FGLAQLYQLRGRVGR+  +A+A+LLYP K  L++ A ERL A++E
Sbjct: 899  DIPRVNTIIIEDAQKFGLAQLYQLRGRVGRSGVQAHAWLLYPAKGELTETARERLKAIQE 958

Query: 604  CRELGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVP 663
              +LG G+QLA RD+ IRG G + G +Q+G +  +G DL+ EML E+L +++   +  V 
Sbjct: 959  FTQLGSGYQLATRDLEIRGAGNLLGAEQSGQMEAIGFDLYMEMLQEALREIQGQEIPQV- 1017

Query: 664  YHSVQVDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRP 723
                Q+D+ +   +P++YI+  E  M++         + T  L Q   +L  +YG  P P
Sbjct: 1018 -EDTQIDLKLTAFIPNDYISDPEQKMDVYRAIATANSQKT--LGQIAADLVDRYGAIPSP 1074

Query: 724  MEVLLKKLYLRRMAADIGINRIYSSGKT-VFMKANITKKVFKMMTDSMTSDI 774
            +  L K + L+ +A  +G +RI   GK  + ++  + +  +K++ + +   I
Sbjct: 1075 VAQLFKVIELKHLAKSLGFSRIKPDGKQHIILETPMEEPAWKLLQEHLPQHI 1126


>I4I0A3_MICAE (tr|I4I0A3) Transcription-repair-coupling factor OS=Microcystis
            aeruginosa PCC 9809 GN=mfd PE=4 SV=1
          Length = 1160

 Score =  552 bits (1423), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 293/649 (45%), Positives = 425/649 (65%), Gaps = 15/649 (2%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKM--DVPKNSAEPTEYVFIEYADGMAKLPVKQ 188
            S +VD   LR  D+VVHK  GIG FI ++          +  +Y+ I+YADG+ ++P   
Sbjct: 479  SVQVDVNKLRPLDFVVHKHHGIGQFIKLEKQESTIGGVVQGRDYLVIKYADGLLRVPA-D 537

Query: 189  SSKMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRP 248
            S   L RY   +   +   L K++  + WE  K + + +++K+ VDL+ +Y  R ++   
Sbjct: 538  SVDNLSRY--RHTGSQAPELHKISGKA-WEATKARVRKSVKKLAVDLINIYAQRAQKSGF 594

Query: 249  PYP-KSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALR 307
             YP  +P   E    FPY+PT DQ +A  DV++DL E + PMDRL+CGDVGFGKTEVA+R
Sbjct: 595  AYPMDNPWQRELEDSFPYQPTADQLKAIQDVKRDL-ESDRPMDRLVCGDVGFGKTEVAIR 653

Query: 308  AI-RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLES 366
            AI + V +  KQ  +LAPT +L +QH+  + ERFA YP I VGLL+RF+T +EK++ ++ 
Sbjct: 654  AIFKAVTTGHKQVALLAPTTILTQQHYHTLKERFAPYP-INVGLLNRFRTNSEKKDIVQR 712

Query: 367  IKSGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATP 426
            +K+GELDI+VGT  LL   V + +LGLLV+DEEQRFGV QKEKI  FK+++DVLTLSATP
Sbjct: 713  LKTGELDIVVGTQLLLSKAVEFKDLGLLVIDEEQRFGVNQKEKIKAFKSNIDVLTLSATP 772

Query: 427  IPRTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPR 486
            IPRTLY++L+G R+ SLITTPPP R PI+THLSS++ + + +AI+ ELDRGGQ+FYV+PR
Sbjct: 773  IPRTLYMSLSGVREMSLITTPPPSRRPIQTHLSSYNSDVIRTAIRNELDRGGQIFYVVPR 832

Query: 487  IKGLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQ 546
            I+G+EE    ++   P   I+IGHG+    +LE TM  F  GE  IL+ T IVESGLDI 
Sbjct: 833  IEGIEEKAAAIQGMIPGARISIGHGRMDEAELETTMLAFNNGEADILVCTTIVESGLDIP 892

Query: 547  NANTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRE 606
              NTII++D Q+FGLAQLYQLRGRVGR+  +A+A+LLYP K  L++ A ERL A++E  +
Sbjct: 893  RVNTIIIEDAQKFGLAQLYQLRGRVGRSGVQAHAWLLYPAKAELTETARERLKAIQEFTQ 952

Query: 607  LGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHS 666
            LG G+QLA RD+ IRG G + G +Q+G +  +G DL+ EML E+L +++   +  V    
Sbjct: 953  LGSGYQLATRDLEIRGAGNLLGAEQSGQMEAIGFDLYMEMLQEALREIQGQEIPQV--ED 1010

Query: 667  VQVDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEV 726
             Q+D+ +   +P++YI+ LE  M++         +   +L Q   +L  +YG  P P+  
Sbjct: 1011 TQIDLKLTAFIPNDYISDLEQKMDVYRAIATANSQK--NLGQIAADLVDRYGAIPSPVAQ 1068

Query: 727  LLKKLYLRRMAADIGINRIYSSGKT-VFMKANITKKVFKMMTDSMTSDI 774
            L K + L+ +A  +G +RI   GK  + ++  + +  +K++ + +   I
Sbjct: 1069 LFKVIELKHLAKSLGFSRIKPDGKQHIILETPMEEPAWKLLQEHLPQHI 1117


>I4FXH2_MICAE (tr|I4FXH2) Transcription-repair-coupling factor OS=Microcystis
            aeruginosa PCC 9717 GN=mfd PE=4 SV=1
          Length = 1160

 Score =  552 bits (1423), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 293/650 (45%), Positives = 422/650 (64%), Gaps = 17/650 (2%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSA--EPTEYVFIEYADGMAKLPVKQ 188
            S +VD   LR  D+VVHK  GIG FI ++      S   +  +Y+ I+YADG+ ++P   
Sbjct: 479  SVQVDVNKLRPLDFVVHKHHGIGQFIKLEKQESTISGVVQGRDYLVIKYADGLLRVPADS 538

Query: 189  SSKM-LYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRR 247
               +  YR+    E +  K   K      WE  K + + +++K+ VDL+ +Y  R ++  
Sbjct: 539  VDNLSRYRHTGSQEPELHKISGK-----AWEATKARVRKSVKKLAVDLINIYAQRAQKSG 593

Query: 248  PPYP-KSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVAL 306
              YP  +P   E    FPY+PT DQ +A  DV++DL E + PMDRL+CGDVGFGKTEVA+
Sbjct: 594  FAYPMDNPWQRELEDSFPYQPTADQLKAIQDVKRDL-ESDRPMDRLVCGDVGFGKTEVAI 652

Query: 307  RAI-RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLE 365
            RAI + V +  KQ  +LAPT +L +QH+  + ERFA YP I VGLL+RF+T +EK++ ++
Sbjct: 653  RAIFKAVTTGHKQVALLAPTTILTQQHYHTLKERFAPYP-INVGLLNRFRTNSEKKDIVQ 711

Query: 366  SIKSGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSAT 425
             +K+GELDI+VGT  LL   V + +LGLLV+DEEQRFGV QKEKI  FK+++DVLTLSAT
Sbjct: 712  RLKTGELDIVVGTQLLLSKAVEFKDLGLLVIDEEQRFGVNQKEKIKAFKSNIDVLTLSAT 771

Query: 426  PIPRTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLP 485
            PIPRTLY++L+G R+ SLITTPPP R PI+THLSS++ + + +AI+ ELDRGGQ+FYV+P
Sbjct: 772  PIPRTLYMSLSGVREMSLITTPPPSRRPIQTHLSSYNSDVIRTAIRNELDRGGQIFYVVP 831

Query: 486  RIKGLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDI 545
            RI+G+EE    ++   P   IAIGHG+    +LE TM  F  GE  IL+ T IVESGLDI
Sbjct: 832  RIEGIEEKAAAIQGMIPGARIAIGHGRMDEAELETTMLAFNNGEADILVCTTIVESGLDI 891

Query: 546  QNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECR 605
               NTII++D Q+FGLAQLYQLRGRVGR+  +A+A+LLYP K  L++ A ERL A++E  
Sbjct: 892  PRVNTIIIEDAQKFGLAQLYQLRGRVGRSGVQAHAWLLYPAKAELTETARERLKAIQEFT 951

Query: 606  ELGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYH 665
            +LG G+QLA RD+ IRG G + G +Q+G +  +G DL+ EML E+L +++   +  V   
Sbjct: 952  QLGSGYQLATRDLEIRGAGNLLGAEQSGQMEAIGFDLYMEMLQEALREIQGQEIPQV--E 1009

Query: 666  SVQVDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPME 725
              Q+D+ +   +P++YI+  E  M++         +   +L Q   +L  +YG  P P+ 
Sbjct: 1010 DTQIDLKLTAFIPNDYISDPEQKMDVYRAIATANSQK--NLGQIAADLVDRYGAIPSPVA 1067

Query: 726  VLLKKLYLRRMAADIGINRIYSSGKT-VFMKANITKKVFKMMTDSMTSDI 774
             L K + L+ +A  +G +RI   GK  + ++  + +  +K++ + +   I
Sbjct: 1068 QLFKVIELKHLAKSLGFSRIKPDGKQHIILETPMEEPAWKLLQEHLPQHI 1117


>K9UYR9_9CYAN (tr|K9UYR9) Transcription-repair coupling factor (Precursor)
            OS=Calothrix sp. PCC 6303 GN=Cal6303_1980 PE=4 SV=1
          Length = 1176

 Score =  552 bits (1422), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 306/669 (45%), Positives = 422/669 (63%), Gaps = 26/669 (3%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S +VD   LR GDYVVH+  G+G F+  K++    S E  +Y+ ++YADG+ ++   Q  
Sbjct: 497  SKQVDLNKLRPGDYVVHRNHGLGKFV--KLESLTISDETRDYLVVQYADGLLRVAADQVG 554

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
              L R+   + NK P+ L+K+    VWE  K + + AI+K+ VDL++LY  R KQ    +
Sbjct: 555  A-LSRF-RTSANKNPE-LNKMTG-KVWENTKNRVRKAIKKLAVDLLKLYAARAKQEGFAF 610

Query: 251  PKS-PAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
            P+  P   E    FPY+ TPDQ +A  DV++D+ E + PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 611  PEDMPWQQELEDSFPYQATPDQLKATQDVKRDM-ESDRPMDRLVCGDVGFGKTEVAIRAI 669

Query: 310  RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKS 369
               V+A KQ  +LAPT +L +QH+  I ERF+ YP + VGLL+RF++ AE+ E L+ + S
Sbjct: 670  FKAVTAGKQVALLAPTTILTQQHYHTIKERFSPYP-VNVGLLNRFRSPAERREILKRLAS 728

Query: 370  GELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPR 429
            G+LDI+VGTH LL   +    LGLLVVDEEQRFGV QKEKI + KT VDVLTLSATPIPR
Sbjct: 729  GDLDIVVGTHQLLSKEISIKELGLLVVDEEQRFGVNQKEKIKSLKTQVDVLTLSATPIPR 788

Query: 430  TLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKG 489
            TLY++L+G R+ SLITTPPP R PIKTHL+  + E + +A++ ELDRGGQVFYV+PR++G
Sbjct: 789  TLYMSLSGIREMSLITTPPPSRRPIKTHLAPRNPETIRAALRQELDRGGQVFYVVPRVEG 848

Query: 490  LEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNAN 549
            +EE    L E      IAI HG+    QLE TM  F+ G+  IL+ T I+ESGLDI   N
Sbjct: 849  IEETAIKLREIVGGARIAIAHGQMDESQLESTMLTFSNGDADILVCTTIIESGLDIPRVN 908

Query: 550  TIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQ 609
            TI+++D  +FGLAQLYQLRGRVGRA  +A+A+L YP +  LS+ A +RL A++E  +LG 
Sbjct: 909  TILIEDAHRFGLAQLYQLRGRVGRAGIQAHAWLFYPQQRTLSEAARQRLRAIQEFTQLGS 968

Query: 610  GFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQV 669
            G+QLA RD  IRG G + G +Q+G +  +G DL+ EML E++ ++    +  V     Q+
Sbjct: 969  GYQLAMRDAEIRGVGNLLGAEQSGQLDVIGFDLYMEMLEEAIREIRGQEIPKV--DDTQI 1026

Query: 670  DININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLLK 729
            D+ +   +PS YI   +  M            D   L+    N R  YGK P P   LL+
Sbjct: 1027 DLKLTAFIPSNYIPDADQKMSAYRAVAAAKSVDELMLISLEWNDR--YGKIPTPANQLLR 1084

Query: 730  KLYLRRMAADIGINRIYSSGKT-VFMKANITKKVFKM----MTDSMTSD--------IYR 776
             + L+++A  IG +RI    K  V ++  + +  + +    +TD+M S         I R
Sbjct: 1085 VMELKQLAKKIGFSRIKPEAKQHVALETPMEEPAWNLLAANLTDNMRSRFVYSPGKVIVR 1144

Query: 777  NSLVLEGDQ 785
               VL+ DQ
Sbjct: 1145 GLAVLKADQ 1153


>K9THB9_9CYAN (tr|K9THB9) Transcription-repair coupling factor Mfd OS=Oscillatoria
            acuminata PCC 6304 GN=Oscil6304_2313 PE=4 SV=1
          Length = 1156

 Score =  552 bits (1422), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 289/647 (44%), Positives = 425/647 (65%), Gaps = 20/647 (3%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S +VDP  LR GD+VVH+  G+G FI  K++  +N     EY+ ++Y+DG+ ++PV Q  
Sbjct: 480  SKQVDPNKLRQGDFVVHRHHGVGQFI--KLEKLQNR----EYLVVKYSDGILRVPVDQLE 533

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
              L R+      K+P+ L+KL   S WE  + K + A++K+ VDL+ LY  R  Q+   Y
Sbjct: 534  S-LSRFRTTG-GKRPE-LNKLTSKS-WETTRNKVRKAVKKLAVDLLNLYAKRSDQQGFAY 589

Query: 251  PKS-PAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
            P   P   E    F Y+PTPDQ +A  DV++D+ E E PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 590  PPDMPWQQELEDSFSYQPTPDQLKATHDVKRDM-ESERPMDRLVCGDVGFGKTEVAIRAI 648

Query: 310  RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKS 369
               ++A KQ  +LAPT +L +QH+  I ERFA YP I++GLL+RF++ AE+++    + +
Sbjct: 649  FKAITAGKQVALLAPTTILTQQHYHTIKERFAPYP-IQIGLLNRFRSPAERQDIQNRLAT 707

Query: 370  GELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPR 429
            GELD++VGTHS+L   + + +LGLLVVDEEQRFGV QKEKI   KT VDVLTL+ATPIPR
Sbjct: 708  GELDLVVGTHSVLSKSIQFRDLGLLVVDEEQRFGVNQKEKIKALKTQVDVLTLTATPIPR 767

Query: 430  TLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKG 489
            TLY++L+G R+ SLI TPPP R PI+THL+ +  E   SAI+ ELDRGGQVFYV+PR++G
Sbjct: 768  TLYMSLSGVREMSLIATPPPSRRPIQTHLAPYDLETARSAIRQELDRGGQVFYVVPRVEG 827

Query: 490  LEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNAN 549
            +EEV   L++  P   +AI HG+    +LE     F+ GE  IL+ T I+ESGLDI   N
Sbjct: 828  IEEVGAALQQMVPSARVAIAHGQMNPSELEAITIAFSSGEADILVCTTIIESGLDIPRVN 887

Query: 550  TIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQ 609
            TI+++D  +FGLAQLYQLRGRVGR+  +A+A+L YP    L+D+A +RL A++E  +LG 
Sbjct: 888  TILIEDAHRFGLAQLYQLRGRVGRSGIQAHAWLFYPKSGRLTDEARKRLRAIKEFAQLGS 947

Query: 610  GFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQV 669
            G+QLA RDM IRG G + G +Q+G +  +G DL+ EML E++ ++    +  V     Q+
Sbjct: 948  GYQLAMRDMEIRGVGNLLGAEQSGQLDAIGFDLYMEMLEEAIREIRGQEIPTV--EETQI 1005

Query: 670  DININPHLPSEYINHLENPMEIINE-AERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLL 728
            D+ +   +P +YI  L+  M      A   +EK+   L +   + R +YG  P+P+  L+
Sbjct: 1006 DLTLTAFIPGDYIVDLDQKMSAYRSVALATSEKE---LAEIEADWRDRYGPIPKPVNQLM 1062

Query: 729  KKLYLRRMAADIGINRIYSSG-KTVFMKANITKKVFKMMTDSMTSDI 774
            + + L+++A  +G +RI   G + + ++  + +  + ++  ++ +++
Sbjct: 1063 QVMKLKQIAKPLGFSRIKPEGTQNIVLETPMEEPAWNLLAQNLPANV 1109


>I4GDY9_MICAE (tr|I4GDY9) Transcription-repair-coupling factor OS=Microcystis
            aeruginosa PCC 7941 GN=mfd PE=4 SV=1
          Length = 1169

 Score =  552 bits (1422), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 292/650 (44%), Positives = 428/650 (65%), Gaps = 17/650 (2%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSA--EPTEYVFIEYADGMAKLPVKQ 188
            S +VD   LR  D+VVHK  GIG FI ++      S   +  +Y+ I+YADG+ ++P   
Sbjct: 488  SVQVDVNKLRPLDFVVHKHHGIGQFIKLEKQESTISGVVQGRDYLVIKYADGLLRVPADS 547

Query: 189  SSKM-LYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRR 247
               +  YR+     N++P+ L K++  + WE  K + + +++K+ VDL+ +Y  R ++  
Sbjct: 548  VDNLSRYRHT---GNQEPE-LHKISGKA-WEATKARVRKSVKKLAVDLINIYAQRAQKSG 602

Query: 248  PPYP-KSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVAL 306
              YP  +P   E    FPY+PT DQ +A  DV++DL E + PMDRL+CGDVGFGKTEVA+
Sbjct: 603  FAYPMDNPWQRELEDSFPYQPTADQLKAIQDVKRDL-ESDRPMDRLVCGDVGFGKTEVAI 661

Query: 307  RAI-RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLE 365
            RAI + V +  KQ  +LAPT +L +QH+  + ERFA YP I VGLL+RF+T +EK++ ++
Sbjct: 662  RAIFKAVTTGHKQVALLAPTTILTQQHYHTLKERFAPYP-INVGLLNRFRTNSEKKDIVQ 720

Query: 366  SIKSGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSAT 425
             +K+GELDI+VGT  LL   V + +LGLLV+DEEQRFGV QKEKI  FK+++DVLTL+AT
Sbjct: 721  RLKTGELDIVVGTQLLLSKAVEFKDLGLLVIDEEQRFGVNQKEKIKAFKSNIDVLTLTAT 780

Query: 426  PIPRTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLP 485
            PIPRTLY++L+G R+ SLITTPPP R PI+THLSS++ + + +AI+ ELDRGGQ+FYV+P
Sbjct: 781  PIPRTLYMSLSGVREMSLITTPPPSRRPIQTHLSSYNSDVIRTAIRNELDRGGQIFYVVP 840

Query: 486  RIKGLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDI 545
            RI+G+EE    ++   P   I+IGHG+    +LE TM  F  GE  IL+ T IVESGLDI
Sbjct: 841  RIEGIEEKAAAIQGMIPGARISIGHGRMDESELETTMLAFNNGEADILVCTTIVESGLDI 900

Query: 546  QNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECR 605
               NTII++D Q+FGLAQLYQLRGRVGR+  +A+A+LLYP K  L++ A ERL A++E  
Sbjct: 901  PRVNTIIIEDAQKFGLAQLYQLRGRVGRSGVQAHAWLLYPAKGELTETARERLKAIQEFT 960

Query: 606  ELGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYH 665
            +LG G+QLA RD+ IRG G + G +Q+G +  +G DL+ EML E+L +++   +  V   
Sbjct: 961  QLGSGYQLATRDLEIRGAGNLLGAEQSGQMEAIGFDLYMEMLQEALREIQGQEIPQV--E 1018

Query: 666  SVQVDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPME 725
              Q+D+ +   +P++YI+  E  M++         +   +L Q   +L  +YG  P P+ 
Sbjct: 1019 DTQIDLKLTAFIPNDYISDPEQKMDVYRAIATANSQK--NLGQIAADLVDRYGAIPSPVA 1076

Query: 726  VLLKKLYLRRMAADIGINRIYSSGKT-VFMKANITKKVFKMMTDSMTSDI 774
             L K + L+ +A  +G +RI   GK  + ++  + +  +K++ + +   I
Sbjct: 1077 QLFKVIELKHLAKSLGFSRIKPDGKQHIILETPMEEPAWKLLQEHLPQHI 1126


>A5GU09_SYNR3 (tr|A5GU09) Transcription-repair coupling factor OS=Synechococcus sp.
            (strain RCC307) GN=mfd PE=4 SV=1
          Length = 1183

 Score =  552 bits (1422), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 283/643 (44%), Positives = 414/643 (64%), Gaps = 13/643 (2%)

Query: 134  VDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSSKML 193
            VDP  +R GD+VVH+  GIG F+  KM+    S +  +Y+ ++Y DG+ ++   Q    L
Sbjct: 485  VDPNRMRQGDFVVHRNHGIGRFL--KMEKLAISGDARDYLVVQYLDGLLRVAADQLGS-L 541

Query: 194  YRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPYP-K 252
             R+   ++   P  L+K+   + W K K + + A++K+  DL++LY  R +     +P  
Sbjct: 542  GRFRASSD--APPQLNKMGGAA-WAKTKARARKAVRKVAFDLVKLYAERTESPGFAFPVD 598

Query: 253  SPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAIRCV 312
             P   E    FPYEPTPDQ +A  +V++D+ E+  PMDRL+CGDVGFGKTEVALRAI   
Sbjct: 599  GPWQNELEDSFPYEPTPDQLKAITEVKRDM-EQGKPMDRLVCGDVGFGKTEVALRAIFKA 657

Query: 313  VSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKSGEL 372
            V+A +Q  +LAPT VLA+QH+  +SERFA YP IKV LL+RF+T +E++E L+ +  G +
Sbjct: 658  VTAGRQTALLAPTTVLAQQHWRTLSERFAPYP-IKVALLNRFRTASERKEILKGLSDGAI 716

Query: 373  DIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPRTLY 432
            D++VGTH LLG    +  LGLLVVDEEQRFGV QKEKI   +  VDVLTLSATPIPRTLY
Sbjct: 717  DVVVGTHQLLGKGTSFKQLGLLVVDEEQRFGVNQKEKIKVLRKDVDVLTLSATPIPRTLY 776

Query: 433  LALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKGLEE 492
            ++L+G R+ SLITTPPP R PIKTHL+S  +E V SAI+ ELDRGGQVFYV+PR++G+EE
Sbjct: 777  MSLSGVREMSLITTPPPLRRPIKTHLASLDEEAVRSAIRQELDRGGQVFYVVPRVEGIEE 836

Query: 493  VMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNANTII 552
            V   L +  P + + + HG+    +LE  M  F  GE  +++ T IVESGLDI   NTI+
Sbjct: 837  VAGGLRQMLPGLRLLVAHGQMPEGELESAMVAFNAGEADVMLCTTIVESGLDIPRVNTIL 896

Query: 553  VQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQGFQ 612
            ++D Q+FGL+QLYQLRGRVGR+  +A+A+L YP    LSD A +RL A++E  +LG G+Q
Sbjct: 897  IEDSQKFGLSQLYQLRGRVGRSGIQAHAWLFYPGDASLSDAARQRLRAIQEFAQLGSGYQ 956

Query: 613  LAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQVDIN 672
            LA RDM IRG G + G +Q+G +  +G DL+ EML E L+++    + AV     Q+D++
Sbjct: 957  LAMRDMEIRGVGNLLGVEQSGQMETIGFDLYMEMLQEELAEIRGQDIPAV--DDTQIDLS 1014

Query: 673  INPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLLKKLY 732
            +   +P++++   +  M     A     ++   L+Q   +   +YG  P P++ LL+ + 
Sbjct: 1015 VTAFIPADWVTEADEKMAAYRAAADCDSRE--GLLQLAADWVDRYGPLPAPVQSLLQLME 1072

Query: 733  LRRMAADIGINRIYSSGKTVFMKANITKKVFKMMTDSMTSDIY 775
            ++ +A   G +RI      + ++  + +  F+ +   + + ++
Sbjct: 1073 IKLLAKRCGFSRIKPEKPNLVLETPMEEPAFRRLRQGLATHLH 1115


>K9ZNN6_ANACC (tr|K9ZNN6) Transcription-repair coupling factor OS=Anabaena
            cylindrica (strain ATCC 27899 / PCC 7122) GN=Anacy_4588
            PE=4 SV=1
          Length = 1168

 Score =  552 bits (1422), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 296/644 (45%), Positives = 416/644 (64%), Gaps = 18/644 (2%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S +VDP  LR GDYVVH+  GIG F+  K++    + E  +Y+ ++YADG+ ++   Q  
Sbjct: 490  SKQVDPNKLRPGDYVVHRSHGIGKFV--KLESLTINHETRDYLVVQYADGLLRVAADQVG 547

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
              L R+   N +K P+ L K+   + WE  K K + AI+K+ VDL++LY  R +Q    Y
Sbjct: 548  S-LSRF-RTNGDKAPQ-LHKMTGKA-WENTKNKVRKAIKKLAVDLLKLYAARSQQEGFSY 603

Query: 251  PKS-PAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
            P   P   E    FPY+PT DQ +A  DV++D+ E E PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 604  PADMPWQEEMEDSFPYQPTTDQLKAVQDVKRDM-ESERPMDRLVCGDVGFGKTEVAIRAI 662

Query: 310  RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKS 369
               V+A KQ  +LAPT +L +QH+  I ERFA YP + VGLL+RF++  EK    + + +
Sbjct: 663  FKAVTAGKQVALLAPTTILTQQHYHTIKERFAPYP-VNVGLLNRFRSAEEKRNIQKRLAT 721

Query: 370  GELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPR 429
            GELDI+VGTH LLG  V + +LGLLV+DEEQRFGV QKEKI + KT VDVLTLSATPIPR
Sbjct: 722  GELDIVVGTHQLLGKGVQFRDLGLLVIDEEQRFGVNQKEKIKSLKTQVDVLTLSATPIPR 781

Query: 430  TLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKG 489
            TLY++L+G R+ SLITTPPP R PI+THL+    E V SAI+ ELDRGGQVFYV+PR++G
Sbjct: 782  TLYMSLSGIREMSLITTPPPTRRPIQTHLAPLKPEIVRSAIRQELDRGGQVFYVVPRVEG 841

Query: 490  LEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNAN 549
            +EE    L E  P    AI HG+    +LE TM  F   +  IL+ T I+ESGLDI   N
Sbjct: 842  IEETTANLREMIPGGRFAIAHGQMDESELESTMLTFGNNDADILVCTTIIESGLDIPRVN 901

Query: 550  TIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQ 609
            TI+++D  +FGLAQLYQLRGRVGRA  +A+A+L YP +  LSD A +RL A++E  +LG 
Sbjct: 902  TILIEDAHRFGLAQLYQLRGRVGRAGIQAHAWLFYPKQRELSDAARQRLRAIQEFTQLGS 961

Query: 610  GFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQV 669
            G+QLA RDM IRG G + G +Q+G +  +G DL+ EML E++ ++    +  V     Q+
Sbjct: 962  GYQLAMRDMEIRGVGNLLGAEQSGQLDAIGFDLYMEMLEEAIREIRGQEIPKV--DDTQI 1019

Query: 670  DININPHLPSEYINHLENPMEIINEAERVAEKDTWSLM--QFTENLRRQYGKEPRPMEVL 727
            D+N+   +PS YI  ++  M           K+  +L+  ++T+    +YG  P     L
Sbjct: 1020 DLNLTAFIPSTYITDIDQKMSAYRAVATAKSKEELTLIAAEWTD----RYGTIPVSANQL 1075

Query: 728  LKKLYLRRMAADIGINRIYSSGKT-VFMKANITKKVFKMMTDSM 770
            L+ + L+++A ++G +RI    K  + ++  + +  + ++ +++
Sbjct: 1076 LRVMELKQIAKNLGFSRIKPENKQHIVLETPMEEPAWNLLAENL 1119


>L8KT32_9SYNC (tr|L8KT32) Transcription-repair coupling factor Mfd OS=Synechocystis
            sp. PCC 7509 GN=Syn7509DRAFT_00007910 PE=4 SV=1
          Length = 1166

 Score =  551 bits (1421), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 287/642 (44%), Positives = 412/642 (64%), Gaps = 14/642 (2%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S +VDP  L  GDYVVH+  G+G F+  K++    + E  EY+ I+YADG+ ++   Q  
Sbjct: 488  SKQVDPNKLAQGDYVVHRSHGLGKFL--KLESLTINRETREYLVIQYADGLLRVAADQVG 545

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
              L R+    +      L++++ +S W   K K + AI+K+ VDL++LY  R +Q    Y
Sbjct: 546  S-LSRFRATGDGTP--VLNRMSSSS-WTTSKNKVRKAIKKLAVDLLKLYAARSQQTGFAY 601

Query: 251  PKS-PAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
            P   P   E    FPY PTPDQ +A  DV++D+ E + PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 602  PPDMPWQEEMEDSFPYAPTPDQLKATADVKRDM-ESDRPMDRLVCGDVGFGKTEVAIRAI 660

Query: 310  RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKS 369
               V+A KQ  +LAPT +L +QH+  + ERFA YP I+VGLL+RF++  E+      + +
Sbjct: 661  FKAVTAGKQVALLAPTTILTQQHYHTLKERFAPYP-IQVGLLNRFRSAEERRNIQARLAT 719

Query: 370  GELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPR 429
            GELDI+VGTH LLG  V   +LGLLV+DEEQRFGV QKEKI + +  VDVLTLSATPIPR
Sbjct: 720  GELDIVVGTHQLLGKGVTIRDLGLLVIDEEQRFGVNQKEKIKSLRNKVDVLTLSATPIPR 779

Query: 430  TLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKG 489
            TLY++L+G R+ SLITTPPP R PIKTHLS +  E + SAI+ E+DRGGQVFYV+PR+ G
Sbjct: 780  TLYMSLSGIREMSLITTPPPSRRPIKTHLSPYDAETIRSAIRQEIDRGGQVFYVVPRVDG 839

Query: 490  LEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNAN 549
            +EE    L ++ P V +AI HG+    QLE TM  F  G+  +L+ T I+ESGLDI   N
Sbjct: 840  IEETSAALRDALPGVRLAIAHGQMDESQLESTMLTFGNGDADVLVCTTIIESGLDIPRVN 899

Query: 550  TIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQ 609
            TI+++D  +FGL+QLYQLRGRVGRA  +A+A+L YP + +LSD A +RL A++E   LG 
Sbjct: 900  TILIEDAHKFGLSQLYQLRGRVGRAGIQAHAWLFYPKQQMLSDAARQRLRAIQEFATLGS 959

Query: 610  GFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQV 669
            G+QL+ RDM IRG G + G +Q+G +  +G DL+ E+L ES+ +++   +  V     Q+
Sbjct: 960  GYQLSMRDMEIRGVGNLLGAEQSGQMEVIGFDLYMEILQESIREIQGAEIPQV--EDTQI 1017

Query: 670  DININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLLK 729
            D+N+   +P++YI  L+  M         + +    L         ++G  P   + LL+
Sbjct: 1018 DLNLTAFIPADYIADLDQKMSAYRAVATASSQS--ELDAIAAEWSDRFGAIPPAAKQLLR 1075

Query: 730  KLYLRRMAADIGINRIYSSGKT-VFMKANITKKVFKMMTDSM 770
             + L+++A  +G +RI    K  + ++  + +  +K+M +++
Sbjct: 1076 VMELKQLAKSLGFSRIKPEAKQHIALETAMAEPAWKLMVENL 1117


>L8LXB3_9CHRO (tr|L8LXB3) Transcription-repair coupling factor Mfd OS=Gloeocapsa
            sp. PCC 73106 GN=GLO73106DRAFT_00036410 PE=4 SV=1
          Length = 1146

 Score =  551 bits (1420), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 298/651 (45%), Positives = 417/651 (64%), Gaps = 26/651 (3%)

Query: 130  FSYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQS 189
             S +VD   L  GDYVVHK  GIG F  ++      S    EY+ I+YADG+ ++P   S
Sbjct: 476  LSKQVDINKLTPGDYVVHKTHGIGKFTQLE------SLATREYLVIQYADGLLRVPAD-S 528

Query: 190  SKMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPP 249
              +L RY      K P  L +++ +  WE  K K +  ++K+ VDL++LY  R +     
Sbjct: 529  LDVLSRYR--QIGKNPPELHRMS-SKAWENTKNKVRKTVKKLAVDLLKLYALRTQATGYA 585

Query: 250  YPKS-PAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRA 308
            YP+  P  +E    FPY+ TPDQ +A  DV++DL E + PMDRLICGDVGFGKTEVA+RA
Sbjct: 586  YPQDQPWQSELEDSFPYQVTPDQLKAIQDVKRDL-ESDRPMDRLICGDVGFGKTEVAIRA 644

Query: 309  I-RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESI 367
            I + V  + KQ   LAPT +L +QH+  + ERFA YP I +GLL+RF+T  E++E LE +
Sbjct: 645  IFKVVAGSNKQVAFLAPTTILTQQHYHTLKERFAPYP-INIGLLNRFRTALERKEILERL 703

Query: 368  KSGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPI 427
             +GE+D++VGT  LL N + + NLGLLV+DEEQRFGV QKEKI   KT +DVLTLSATPI
Sbjct: 704  ATGEIDVVVGTQQLLSNGIKFRNLGLLVIDEEQRFGVNQKEKIKEIKTQLDVLTLSATPI 763

Query: 428  PRTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRI 487
            PRTLY++++G R+ SLITTPPP R PIKTHLS ++ E V +AI+ ELDRGGQ+FYV+PR+
Sbjct: 764  PRTLYMSISGVREMSLITTPPPSRRPIKTHLSPYNLEVVRNAIRNELDRGGQIFYVVPRV 823

Query: 488  KGLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQN 547
            +G+EEV   +    P V IAI HG+    +LE TM  F  G+  IL+ T I+ESGLDI  
Sbjct: 824  EGIEEVAAGIRTMVPGVRIAIAHGQMVEAELESTMLGFNNGDADILLCTTIIESGLDIPR 883

Query: 548  ANTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECREL 607
             NTI+V+D  +FGL+QLYQLRGRVGR+  +A+A+LLYP    L++ A +RL AL+E  +L
Sbjct: 884  VNTIVVEDAHRFGLSQLYQLRGRVGRSGVQAHAWLLYPQTK-LTEAARQRLRALQEFTQL 942

Query: 608  GQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSV 667
            G G+QLA RD+ IRG G + G +Q+G +  +G DL+ EML E++ +++   +  V     
Sbjct: 943  GSGYQLAMRDLEIRGVGNLLGAEQSGQMAAIGFDLYVEMLQEAIKEIQGQEIPQV--EET 1000

Query: 668  QVDININPHLPSEYINHLENPMEI---INEAERVAEKDTWSLMQFTENLRRQYGKEPRPM 724
            Q+D+     +P++YI  LE  ME    +  A   AE     L Q       +YG  P P+
Sbjct: 1001 QIDLAFTAFIPTDYIPDLEQKMEAYRSLATANSSAE-----LTQIALGWNDRYGPLPPPV 1055

Query: 725  EVLLKKLYLRRMAADIGINRIYSSGK-TVFMKANITKKVFKMMTDSMTSDI 774
            + LL+ L L+++   +G  RI +  K  V ++  + +  +K++ D++   I
Sbjct: 1056 QQLLQVLELKQLGKSLGFARIKTEAKQNVVLETPMEEPAWKLLADNLPQHI 1106


>Q31NL3_SYNE7 (tr|Q31NL3) Transcription-repair coupling factor OS=Synechococcus
            elongatus (strain PCC 7942) GN=Synpcc7942_1326 PE=4 SV=1
          Length = 1153

 Score =  550 bits (1418), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 289/647 (44%), Positives = 415/647 (64%), Gaps = 16/647 (2%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S +VD   L+ GDYVVH+  GIG F+  K++    S E  EY+ ++YADG+ ++   Q  
Sbjct: 474  SKQVDRDRLKPGDYVVHRSHGIGRFV--KLESLSLSGEMREYLVLQYADGLLRVAADQMG 531

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
             +     +  E  +  +++    +  WEK K K + A++K+ VDL++LY  R +Q    Y
Sbjct: 532  SLSRYRGMGGERPELSSMT----SKAWEKTKAKARKAVRKVAVDLLKLYAQRSQQEGHAY 587

Query: 251  P-KSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
            P   P   E    FPY+PT DQ +A   V++D+ E   PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 588  PPDQPWQQELEESFPYQPTADQLKAVEAVKRDM-ESPQPMDRLVCGDVGFGKTEVAVRAI 646

Query: 310  RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKS 369
               V+A KQ  +LAPT +L +QH+  + ERFA YP I++GLL+RF+T +E++   + + +
Sbjct: 647  FKAVTAGKQVALLAPTTILTQQHYHTLKERFAPYP-IQIGLLNRFRTASERQNIQQRLAT 705

Query: 370  GELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPR 429
            GELD++VGTH LL     + +LGLLVVDEEQRFGV QKEKI   KT VDVLTLSATPIPR
Sbjct: 706  GELDVVVGTHQLLSKGTQFRDLGLLVVDEEQRFGVNQKEKIKALKTQVDVLTLSATPIPR 765

Query: 430  TLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKG 489
            TLY+AL+G R+ SLITTPPP R PIKTHL  +  E V +AI  E+DRGGQVFYV+PR++G
Sbjct: 766  TLYMALSGVREMSLITTPPPSRRPIKTHLMPYDLEAVRTAISQEIDRGGQVFYVVPRVEG 825

Query: 490  LEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNAN 549
            +E +   L+E  P + IA+ HG+    +LE TM  F   E  ++I T I+ESGLDI   N
Sbjct: 826  IEAIATRLQEMLPSLRIAVAHGQMPEGELEATMLAFNNNEADVMICTTIIESGLDIPRVN 885

Query: 550  TIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQ 609
            TI+++D Q+FGL+QLYQLRGRVGRA  +A+A+L YP + +LSDQA +RL A++E  +LG 
Sbjct: 886  TILIEDAQRFGLSQLYQLRGRVGRAGIQAHAWLFYPGETVLSDQARQRLRAIQEFTQLGS 945

Query: 610  GFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQV 669
            G+QLA RD+ IRG G + G +Q+G +  +G DL+ EML ESL ++    +  V     Q+
Sbjct: 946  GYQLAMRDLEIRGVGNLLGVEQSGQMEAIGFDLYMEMLQESLQEIRGQDIPQV--DDTQI 1003

Query: 670  DININPHLPSEYINHLENPMEIINEAERVAEKDT-WSLMQFTENLRRQYGKEPRPMEVLL 728
            D+++   +P++YI  ++  M        VA   T   L+Q   +   +YG  P   + LL
Sbjct: 1004 DLSLTAFIPADYIPDIDAKMSAYRA---VASAQTPADLLQIAADWSDRYGSLPASAQQLL 1060

Query: 729  KKLYLRRMAADIGINRIYSSGKT-VFMKANITKKVFKMMTDSMTSDI 774
            + + L+++A  +G  RI +  K  V ++  +    +K + + + S++
Sbjct: 1061 RVMELKQVAKSLGFARIRTESKQHVILETPMEAPAWKRLHEKLPSNL 1107


>Q3AXP6_SYNS9 (tr|Q3AXP6) Transcription-repair coupling factor OS=Synechococcus sp.
            (strain CC9902) GN=Syncc9902_1176 PE=4 SV=1
          Length = 1192

 Score =  550 bits (1417), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 293/648 (45%), Positives = 414/648 (63%), Gaps = 17/648 (2%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S  VDP  +R GD+VVH+  GIG F    MD    S +  +Y+ ++YADG+ ++   Q  
Sbjct: 491  SRTVDPNKMRPGDFVVHRNHGIGRFKA--MDKLALSGDVRDYLVVQYADGILRVAADQLG 548

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
              L RY   +E+  P  LS++   + W K K + K A++K+ +DL++LY  R +     +
Sbjct: 549  S-LGRYRATSES--PPQLSRMGGAA-WTKAKDRAKKAVRKVALDLVKLYAERQQSNGFAF 604

Query: 251  P-KSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
            P   P   E    FPYEPTPDQ ++  DV++D+ ER  PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 605  PPDGPWQTELEESFPYEPTPDQLKSTTDVKRDM-ERAEPMDRLVCGDVGFGKTEVAIRAI 663

Query: 310  RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKS 369
               ++A KQ  +LAPT VLA+QH+  +SERFA YP IKV LL+RF+T  E++  LE +K 
Sbjct: 664  FKAITAGKQVAMLAPTTVLAQQHWRTLSERFAPYP-IKVALLNRFRTTTERKSILEGLKQ 722

Query: 370  GELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPR 429
            G +D +VGTH LL     +  LGLLVVDEEQRFGV QKEKI   +  VDVLTLSATPIPR
Sbjct: 723  GTIDAVVGTHQLLSKSTSFQQLGLLVVDEEQRFGVNQKEKIKVLRKDVDVLTLSATPIPR 782

Query: 430  TLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKG 489
            TLY++L+G R+ SLITTPPP R PIKTHL+S   E V SAI+ ELDRGGQVFYV+PR++G
Sbjct: 783  TLYMSLSGVREMSLITTPPPLRRPIKTHLASLDPEAVRSAIRQELDRGGQVFYVVPRVEG 842

Query: 490  LEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNAN 549
            +E+V   L    P +++ + HG+    +LE  M  F  GE  +++ T IVESGLDI   N
Sbjct: 843  IEDVANGLRTMLPGLKLLVAHGQMAEGELESAMVAFNAGEADVMLCTTIVESGLDIPRVN 902

Query: 550  TIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQ 609
            TI+++D  +FGLAQLYQLRGRVGR+  +A+A+L YP    LSD A +RL A++E  +LG 
Sbjct: 903  TILIEDAHRFGLAQLYQLRGRVGRSGIQAHAWLFYPGNASLSDNARQRLRAIQEFAQLGS 962

Query: 610  GFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQV 669
            G+QLA RDM IRG G + G +Q+G +  +G DL+ EML ESL++++   + +V     QV
Sbjct: 963  GYQLAMRDMEIRGVGNLLGVEQSGQMETIGFDLYMEMLQESLAEIQGQDIPSV--DDTQV 1020

Query: 670  DININPHLPSEYINHLENPMEIINEAERVAEKDTWS--LMQFTENLRRQYGKEPRPMEVL 727
            D+ +   +P+++I    +P E I  A R A   T S  L++       ++G  P  ++ L
Sbjct: 1021 DLPVTAFVPADWIT---DPDEKI-AAYRAAADCTSSEALVELAAGWADRFGAIPAAVQSL 1076

Query: 728  LKKLYLRRMAADIGINRIYSSGKTVFMKANITKKVFKMMTDSMTSDIY 775
            L+ + L+ +A   G +RI      + ++  + +  F+++   +   ++
Sbjct: 1077 LQLMELKMLAKRCGFSRIKPEKPNIVLETPMEEPAFRLLRQGLPQHLH 1124


>B2J5R8_NOSP7 (tr|B2J5R8) Transcription-repair coupling factor OS=Nostoc
            punctiforme (strain ATCC 29133 / PCC 73102) GN=Npun_R5494
            PE=4 SV=1
          Length = 1170

 Score =  549 bits (1415), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 287/616 (46%), Positives = 401/616 (65%), Gaps = 13/616 (2%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S +VDP  LR GDYVVH+  G+G F+  K++    + E  +Y+ ++YADG+ ++   Q  
Sbjct: 492  SKQVDPNKLRPGDYVVHRNHGVGKFV--KLESLTINDETRDYLVVQYADGLLRVAADQVG 549

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
              L R+     +K P+ L+++   + WE  K K + AI+K+ VDL++LY  R +Q+   +
Sbjct: 550  A-LSRF-RAGGDKAPE-LNRMTGKA-WENTKNKVRKAIKKLAVDLLKLYAARSQQQGFSF 605

Query: 251  PKS-PAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
            P   P   E    FPY+PT DQ +A  DV++D+ E + PMDRL+CGDVGFGKTEVA+RA+
Sbjct: 606  PSDMPWQEELEDSFPYQPTTDQLKAVQDVKRDM-ESDRPMDRLVCGDVGFGKTEVAIRAV 664

Query: 310  RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKS 369
               V+A KQ  +LAPT +L +QH+  + ERFA YP + VGLL+RF++  E+ +  + + +
Sbjct: 665  FKAVTAGKQVALLAPTTILTQQHYHTLKERFAPYP-VNVGLLNRFRSAEERRDIQKRLAT 723

Query: 370  GELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPR 429
            GELD++VGT  LLG  V++ +LGLLVVDEEQRFGV QKEKI + KT VDVLTLSATPIPR
Sbjct: 724  GELDVVVGTQQLLGKGVMFRDLGLLVVDEEQRFGVNQKEKIKSLKTQVDVLTLSATPIPR 783

Query: 430  TLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKG 489
            TLY++L+G R+ SLITTPPP R  IKTHLS  + E + SAI+ ELDRGGQVFYV+PR+ G
Sbjct: 784  TLYMSLSGIREMSLITTPPPTRRAIKTHLSPINSESIRSAIRQELDRGGQVFYVVPRVDG 843

Query: 490  LEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNAN 549
            +EE    L E  P    AI HG+    +LE TM  F+ G+  IL+ T I+ESGLDI   N
Sbjct: 844  IEETTANLREVIPGARFAIAHGQMDESELESTMLTFSNGDADILVCTTIIESGLDIPRVN 903

Query: 550  TIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQ 609
            TI+++D  +FGLAQLYQLRGRVGRA  +A+A+L YP +  LSD A +RL A++E  +LG 
Sbjct: 904  TILIEDAHRFGLAQLYQLRGRVGRAGIQAHAWLFYPKQRQLSDAARQRLRAIQEFTQLGS 963

Query: 610  GFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQV 669
            G+QLA RDM IRG G + G +Q+G +  +G DL+ EML E++ ++    +  V     Q+
Sbjct: 964  GYQLAMRDMEIRGVGNLLGAEQSGQMDAIGFDLYMEMLEEAIREIRGQEIPKV--EDTQI 1021

Query: 670  DININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLLK 729
            D+N+   +P++YI  L+  M           K    L Q       +YG  P     LL+
Sbjct: 1022 DLNLTAFIPADYITDLDQKMSAYRAVATAKSKS--ELNQIAAEWSDRYGTLPVSANQLLR 1079

Query: 730  KLYLRRMAADIGINRI 745
             + L+++A  +G +RI
Sbjct: 1080 VMELKQLAKKLGFSRI 1095


>B1XL29_SYNP2 (tr|B1XL29) Transcription-repair coupling factor (TRCF)
            OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 /
            PR-6) GN=mfd PE=4 SV=1
          Length = 1162

 Score =  549 bits (1414), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 295/625 (47%), Positives = 407/625 (65%), Gaps = 24/625 (3%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S  VD   L  GDY+VHK  GIG FI I+      + +  EY+ ++YADG+ ++P   S 
Sbjct: 488  SKTVDVNKLNPGDYIVHKSHGIGRFIKIE------TLQSREYLVLKYADGILRIPAD-SL 540

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
              L RY   +  K    L ++   + WEK K K + +++K+ VDL+++Y  R + +   Y
Sbjct: 541  DTLSRY--RHTAKGRPELHRMGGKT-WEKTKAKVRKSVKKLAVDLLKIYAQRAEMKGITY 597

Query: 251  PK-SPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
            P  +P   E    FPY+ TPDQ +A  D+++DL E + PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 598  PSDAPWQQEMEDSFPYQATPDQLKAVQDIKRDL-ESDRPMDRLVCGDVGFGKTEVAIRAI 656

Query: 310  -RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIK 368
             + V    KQ  +LAPT +L +QH+  + ERF+ YP I +GLL+RF+T +E+++ LE + 
Sbjct: 657  FKVVTGGHKQVALLAPTTILTQQHYHTLKERFSPYP-INIGLLNRFRTASERKDILERLH 715

Query: 369  SGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIP 428
             GELDI+VGT  LLG  V + +LGLLVVDEEQRFGV QKEKI   KT VDVLTLSATPIP
Sbjct: 716  KGELDIVVGTQQLLGKDVQFKDLGLLVVDEEQRFGVNQKEKIKALKTKVDVLTLSATPIP 775

Query: 429  RTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIK 488
            RTLY++L+G R+ SLITTPPP R PI+TH+S  + E + +AI+ ELDRGGQ+FYV+PR++
Sbjct: 776  RTLYMSLSGIREMSLITTPPPSRRPIQTHVSRHNPEIIRTAIRNELDRGGQIFYVVPRVE 835

Query: 489  GLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNA 548
            G+E +   L+E  P   +AI HG+     LE TM  F  GE  IL+ T IVESGLDI   
Sbjct: 836  GIETIATQLQEMIPSARVAIAHGQMNEADLETTMLTFNNGEADILLCTTIVESGLDIPRV 895

Query: 549  NTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELG 608
            NTIIV+D Q+FGL+QLYQLRGRVGR+  +A+A+LLYP K  L+++A +RL AL+E  +LG
Sbjct: 896  NTIIVEDAQKFGLSQLYQLRGRVGRSGIQAHAWLLYPSKGELTEKARKRLRALQEFSQLG 955

Query: 609  QGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQ 668
             G+QLA RDM IRG G + G +Q+G +  +G DL+ EML + +S++    +  V     Q
Sbjct: 956  SGYQLAMRDMEIRGVGNLLGAEQSGQMEAIGFDLYMEMLQDCISEIRGQEIPQV--DDCQ 1013

Query: 669  VDININPHLPSEYINHLENPME---IINEAERVAEKDTWSLMQFTENLRRQYGKEPRPME 725
            VD+ +   +PS YI   +  ++   +I +A    E     LMQ   +   +YGK P  +E
Sbjct: 1014 VDLRLTAFIPSNYITDGDQKLDAYRLITQANSKLE-----LMQIAADWGDRYGKLPPSVE 1068

Query: 726  VLLKKLYLRRMAADIGINRIYSSGK 750
             LL+ + L+ +A  +G  RI   GK
Sbjct: 1069 QLLQVIELKMIAKSLGFARIKPEGK 1093


>Q066U1_9SYNE (tr|Q066U1) Transcription-repair coupling factor OS=Synechococcus sp.
            BL107 GN=BL107_13300 PE=4 SV=1
          Length = 1192

 Score =  548 bits (1413), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 289/647 (44%), Positives = 411/647 (63%), Gaps = 15/647 (2%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S  VDP  +R GD+VVH+  GIG F    MD    S +  +Y+ ++YADG+ ++   Q  
Sbjct: 491  SRTVDPNKMRPGDFVVHRNHGIGRFKA--MDKLALSGDVRDYLVVQYADGILRVAADQLG 548

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
              L RY   +E+  P  LS++   + W K K + K A++K+ +DL++LY  R +     +
Sbjct: 549  S-LGRYRATSES--PPQLSRMGG-AAWTKAKDRAKKAVRKVALDLVKLYAERQQSNGFAF 604

Query: 251  P-KSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
            P   P   E    FPYEPTPDQ ++  DV++D+ ER  PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 605  PPDGPWQTELEESFPYEPTPDQLKSTTDVKRDM-ERAEPMDRLVCGDVGFGKTEVAIRAI 663

Query: 310  RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKS 369
               ++A KQ  +LAPT VLA+QH+  +SERFA YP IKV LL+RF+T  E++  LE +K 
Sbjct: 664  FKAITAGKQVAMLAPTTVLAQQHWRTLSERFAPYP-IKVALLNRFRTTTERKSILEGLKQ 722

Query: 370  GELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPR 429
            G +D +VGTH LL     +  LGLLVVDEEQRFGV QKEKI   +  VDVLTLSATPIPR
Sbjct: 723  GTIDAVVGTHQLLSKGTSFQQLGLLVVDEEQRFGVNQKEKIKVLRKDVDVLTLSATPIPR 782

Query: 430  TLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKG 489
            TLY++L+G R+ SLITTPPP R PIKTHL+S   E V SAI+ ELDRGGQVFYV+PR++G
Sbjct: 783  TLYMSLSGVREMSLITTPPPLRRPIKTHLASLDPEAVRSAIRQELDRGGQVFYVVPRVEG 842

Query: 490  LEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNAN 549
            +E+V   L    P +++ + HG+    +LE  M  F  GE  +++ T IVESGLDI   N
Sbjct: 843  IEDVATGLRAMLPGLKLLVAHGQMAEGELESAMVAFNAGEADVMLCTTIVESGLDIPRVN 902

Query: 550  TIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQ 609
            TI+++D  +FGLAQLYQLRGRVGR+  +A+A+L YP    LSD A +RL A++E  +LG 
Sbjct: 903  TILIEDAHRFGLAQLYQLRGRVGRSGIQAHAWLFYPGNASLSDNARQRLRAIQEFAQLGS 962

Query: 610  GFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQV 669
            G+QLA RDM IRG G + G +Q+G +  +G DL+ EML ESL++++   + +V     QV
Sbjct: 963  GYQLAMRDMEIRGVGNLLGVEQSGQMETIGFDLYMEMLQESLAEIQGQDIPSV--DDTQV 1020

Query: 670  DININPHLPSEYINHLENPME-IINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLL 728
            D+ +   +P+++I    +P E I           + +L++       +YG  P  ++ LL
Sbjct: 1021 DLPVTAFVPADWIT---DPDEKIAAYRAAADCASSEALVELAAGWADRYGAIPAAVQSLL 1077

Query: 729  KKLYLRRMAADIGINRIYSSGKTVFMKANITKKVFKMMTDSMTSDIY 775
            + + L+ +A   G +RI      + ++  + +  F+++   +   ++
Sbjct: 1078 QLMELKMLAKRCGFSRIKPEKPNIVLETPMEEPAFRLLRQGLPQHLH 1124


>K9SLG5_9CYAN (tr|K9SLG5) Transcription-repair coupling factor (Precursor)
            OS=Pseudanabaena sp. PCC 7367 GN=Pse7367_2383 PE=4 SV=1
          Length = 1179

 Score =  548 bits (1412), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 292/647 (45%), Positives = 418/647 (64%), Gaps = 14/647 (2%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S +VD   L  GDY+VHK  GIG F+  +++    + E  EY+ I+Y DG+ ++   Q  
Sbjct: 498  SKQVDINKLSPGDYIVHKHHGIGKFL--RLESLTINHETREYLVIKYEDGLLRVAADQVG 555

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
              L R+   +E   P+ L+K+   + W   K K + AI+K+ +DL++LY  R +Q    +
Sbjct: 556  T-LSRFRRTSEGA-PR-LNKMTGKA-WANTKNKVRKAIKKIAIDLLKLYAQRAQQMGFAF 611

Query: 251  P-KSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
            P   P   E    FPY+PTPDQ +A  DV++D+ E + PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 612  PVDMPWQEELEDSFPYQPTPDQLKAIQDVKQDM-ESDRPMDRLVCGDVGFGKTEVAVRAI 670

Query: 310  RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKS 369
               ++  KQ+ +LAPT +LA+QH+    ERFA YP IKV LL+RF+T  E++E ++ +K+
Sbjct: 671  FKALTTGKQSALLAPTTILAQQHYHTFQERFAPYP-IKVALLNRFKTANERKEIIQKLKT 729

Query: 370  GELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPR 429
            GE+D+++GTH +L   V + +LGLLVVDEEQRFGV QKEKI T KT VDVLTL+ATPIPR
Sbjct: 730  GEIDLVIGTHQILSKEVKFKDLGLLVVDEEQRFGVAQKEKIKTLKTEVDVLTLTATPIPR 789

Query: 430  TLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKG 489
            TLY++L+G R+ SLI TPPP R  IKTHLS ++ E V +AI+ ELDRGGQ+FYV+PRI+G
Sbjct: 790  TLYMSLSGVREMSLIATPPPSRRAIKTHLSRYNDETVRTAIRQELDRGGQIFYVVPRIEG 849

Query: 490  LEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNAN 549
            +E++M  + E  P   +AI HG+    +LE TM  F  GE  +LI T I+ESGLDI   N
Sbjct: 850  MEQIMTRIREMIPSARLAIAHGQMPESELESTMLAFNSGEADVLICTTIIESGLDIPRVN 909

Query: 550  TIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQ 609
            TII++D Q+FGLAQLYQLRGRVGRA  +A+A+L Y  K  L+  A +RL A++E   LG 
Sbjct: 910  TIIIEDAQKFGLAQLYQLRGRVGRAGVQAHAWLFYQPKGELTPPAYKRLRAIQEFTHLGS 969

Query: 610  GFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQV 669
            G+QLA RDM IRG G + G +Q+G +  VG DL+ EML E+++++    ++ V     QV
Sbjct: 970  GYQLAMRDMEIRGVGNLLGAEQSGQINVVGFDLYMEMLQEAINEIRGSEIIEV--DDTQV 1027

Query: 670  DININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLLK 729
            D+ I   +P++Y+   +  M        V  +    L    E  R +YG  P+P + L+K
Sbjct: 1028 DLPITAFIPADYMPDADQKMSAYRAVAAVNSRR--ELASILEEWRDRYGNVPQPAQQLIK 1085

Query: 730  KLYLRRMAADIGINRIYSSGKT-VFMKANITKKVFKMMTDSMTSDIY 775
             + L+ +A  IG +RI    K  V ++  + +  +K++   + + ++
Sbjct: 1086 VMELKLVAKKIGFSRIRPEHKQHVVLETKLEEPAWKILQQRLPAHLH 1132


>Q5N5K1_SYNP6 (tr|Q5N5K1) Transcription-repair coupling factor OS=Synechococcus sp.
            (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=syc0227_c
            PE=4 SV=1
          Length = 1153

 Score =  546 bits (1407), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 287/647 (44%), Positives = 413/647 (63%), Gaps = 16/647 (2%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S +VD   L+ GDYVVH+  GIG F+  K++    S E  EY+ ++YADG+ ++   Q  
Sbjct: 474  SKQVDRDRLKPGDYVVHRSHGIGRFV--KLESLSLSGEMREYLVLQYADGLLRVAADQMG 531

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
             +     +  E  +  +++    +  WEK K K + A++K+ VDL++LY  R +Q    Y
Sbjct: 532  SLSRYRGMGGERPELSSMT----SKAWEKTKAKARKAVRKVAVDLLKLYAQRSQQEGHAY 587

Query: 251  P-KSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
            P   P   E    FPY+PT DQ +A   V++D+ E   PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 588  PPDQPWQQELEESFPYQPTADQLKAVEAVKRDM-ESPQPMDRLVCGDVGFGKTEVAVRAI 646

Query: 310  RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKS 369
               V+A KQ  +LAPT +L +QH+  + ERFA YP I++GLL+RF+T +E++   + + +
Sbjct: 647  FKAVTAGKQVALLAPTTILTQQHYHTLKERFAPYP-IQIGLLNRFRTASERQNIQQRLAT 705

Query: 370  GELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPR 429
            GELD++VGT  LL     + +LGLLVVDEEQRFGV QKEKI   KT VDVLTLSATPIPR
Sbjct: 706  GELDVVVGTQQLLSKGTQFRDLGLLVVDEEQRFGVNQKEKIKALKTQVDVLTLSATPIPR 765

Query: 430  TLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKG 489
            TLY+AL+G R+ SLITTPPP R PIKTHL  +  E V +AI  E+DRGGQVFYV+PR++G
Sbjct: 766  TLYMALSGVREMSLITTPPPSRRPIKTHLMPYDLEAVRTAISQEIDRGGQVFYVVPRVEG 825

Query: 490  LEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNAN 549
            +E +   L+E  P + IA+ HG+    +LE TM  F   E  ++I T I+ESGLDI   N
Sbjct: 826  IEAIATRLQEMLPSLRIAVAHGQMPEGELEATMLAFNNNEADVMICTTIIESGLDIPRVN 885

Query: 550  TIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQ 609
            TI+++D Q+FGL+QLYQLRGRVGRA  +A+A+L YP + +LSDQA +RL A++E  +LG 
Sbjct: 886  TILIEDAQRFGLSQLYQLRGRVGRAGIQAHAWLFYPGETVLSDQARQRLRAIQEFTQLGS 945

Query: 610  GFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQV 669
            G+QLA RD+ IRG G + G +Q+G +  +G DL+ EML ESL ++    +  V     Q+
Sbjct: 946  GYQLAMRDLEIRGVGNLLGVEQSGQMEAIGFDLYMEMLQESLQEIRGQDIPQV--DDTQI 1003

Query: 670  DININPHLPSEYINHLENPMEIINEAERVAEKDT-WSLMQFTENLRRQYGKEPRPMEVLL 728
            D+++   +P++YI  ++  M        VA   T   L+Q   +   +YG  P   + LL
Sbjct: 1004 DLSLTAFIPADYIPDIDAKMSAYRA---VASAQTPADLLQIAADWSDRYGSLPASAQQLL 1060

Query: 729  KKLYLRRMAADIGINRIYSSGKT-VFMKANITKKVFKMMTDSMTSDI 774
            + + L+++A  +G  R  +  K  V ++  +    +K + + + S++
Sbjct: 1061 RVMELKQVAKSLGFARTRTESKQHVILETPMEAPAWKRLHEKLPSNL 1107


>D7DWQ6_NOSA0 (tr|D7DWQ6) Transcription-repair coupling factor OS=Nostoc azollae
            (strain 0708) GN=Aazo_4404 PE=4 SV=1
          Length = 1166

 Score =  546 bits (1406), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 296/661 (44%), Positives = 414/661 (62%), Gaps = 15/661 (2%)

Query: 130  FSYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQS 189
             S +VD   LR GD+VVH+  GIG F+ ++     N  E  +Y+ I+YADG+ K+   + 
Sbjct: 487  ISKQVDTNKLRPGDFVVHRSHGIGKFVELESLTINN--ETRDYLVIQYADGLLKVAADKV 544

Query: 190  SKMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPP 249
               L R+    +  +  AL K+   + W+  K K + AI+K+ VDL++LY  R +Q+   
Sbjct: 545  GS-LSRFRTSGD--QTPALHKMTGKA-WDNTKNKVRKAIKKLAVDLLKLYAARSQQQGFA 600

Query: 250  YPKS-PAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRA 308
            YP   P   E    FPY+ T DQ +A  DV++D+ E E PMDRL+CGDVGFGKTEVA+RA
Sbjct: 601  YPADMPWQEEMEDSFPYQATTDQLKAVQDVKRDM-ESERPMDRLVCGDVGFGKTEVAIRA 659

Query: 309  IRCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIK 368
            I   V+A KQ  VLAPT +L +QH+  I ERF+ YP + VGLL+RF++  EK    + + 
Sbjct: 660  IFKAVTAGKQVAVLAPTTILTQQHYHTIKERFSPYP-VNVGLLNRFRSAEEKRNIQKRLA 718

Query: 369  SGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIP 428
            +GELDI+VGTH LLG  V + +LGLLV+DEEQRFGV QKEKI + KT VDVLTLSATPIP
Sbjct: 719  TGELDIVVGTHQLLGKGVQFRDLGLLVIDEEQRFGVNQKEKIKSLKTQVDVLTLSATPIP 778

Query: 429  RTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIK 488
            RTLY++L+G R+ SLITTPPP R PI+THL+  + E V SAI+ ELDRGGQVFYV+PR++
Sbjct: 779  RTLYMSLSGIREMSLITTPPPTRRPIQTHLAPLNPEIVRSAIRQELDRGGQVFYVVPRVE 838

Query: 489  GLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNA 548
            G+EE    L E  P    AI HG+    +LE TM  F   +  IL+ T I+ESGLDI   
Sbjct: 839  GIEETTANLREMIPGGRFAIAHGQMEESELESTMLTFGNNDADILVCTTIIESGLDIPRV 898

Query: 549  NTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELG 608
            NTI+++D  +FGLAQLYQLRGRVGRA  +A+A+L Y  +  LSD A  RL A++E  +LG
Sbjct: 899  NTILIEDAHRFGLAQLYQLRGRVGRAGIQAHAWLFYHKQRELSDAARLRLRAIQEFTQLG 958

Query: 609  QGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQ 668
             G+QLA RDM IRG G + G +Q+G +  +G DL+ EML E++ ++    +  V     Q
Sbjct: 959  SGYQLAMRDMEIRGVGNLLGAEQSGQMDAIGFDLYMEMLEEAIREIRGQEIPKV--DDTQ 1016

Query: 669  VDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLL 728
            +D+N+   +PS YI  ++  M           K+   L         +YG  P P   LL
Sbjct: 1017 IDLNLTAFIPSTYITDIDQKMSAYRAVATAKSKE--ELKSIAAEWTDRYGTIPVPANQLL 1074

Query: 729  KKLYLRRMAADIGINRIYSSGKT-VFMKANITKKVFKMMTDSMTSDIYRNSLVLEGDQIK 787
            + + L+++A +IG +RI    K  + ++  + +  + ++ +++T +  RN  V    ++ 
Sbjct: 1075 RVMELKQLARNIGFSRIKPENKQHIVLETPMEEPAWNLLAENLT-ETMRNRFVYSSGKVT 1133

Query: 788  A 788
            A
Sbjct: 1134 A 1134


>K1VVJ2_SPIPL (tr|K1VVJ2) Transcription-repair coupling factor OS=Arthrospira
            platensis C1 GN=SPLC1_S230820 PE=4 SV=1
          Length = 1167

 Score =  546 bits (1406), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 293/622 (47%), Positives = 411/622 (66%), Gaps = 21/622 (3%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S +VDP  L+ GDYVVH++ GIG F+  K++    + E  +Y+ ++YADG  ++   Q  
Sbjct: 488  SKQVDPNRLQPGDYVVHRQHGIGKFV--KLESLTINQEIRDYLVLQYADGTLRVAADQVG 545

Query: 191  KM--LYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRP 248
             +  L R    +E+K P+ L+KL   + WEK + K   +I+K+ VDL++LY  R ++   
Sbjct: 546  TLSRLRR----SESKVPQ-LNKLTGKA-WEKSREKVGKSIKKLAVDLLKLYAERSQKTGF 599

Query: 249  PYPK-SPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALR 307
             YP+ +P   E    FPY+PTPDQ +   DV++D+ E + PMDRL+CGDVGFGKTEVA+R
Sbjct: 600  SYPQDTPWQQEMEDSFPYQPTPDQLKCSQDVKRDM-ESDRPMDRLVCGDVGFGKTEVAIR 658

Query: 308  AIRCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESI 367
            AI   V+A KQ   LAPT +L +QH+  + ERFA YP I++GLL+RF++ +EK+   + +
Sbjct: 659  AIFKAVTAGKQVAFLAPTTILTQQHYHTLKERFAPYP-IEIGLLNRFRSASEKKLIQQKL 717

Query: 368  KSGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPI 427
             +GE+DIIVGTHS+L   + + +LGLLVVDEEQRFGV QKEKI   KT VDVLTL+ATPI
Sbjct: 718  TTGEIDIIVGTHSVLSKHIKFRDLGLLVVDEEQRFGVNQKEKIKALKTHVDVLTLTATPI 777

Query: 428  PRTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRI 487
            PRTLY+AL+G R+ SLITTPPP R PI+THL   ++E + +AI  ELDRGGQVFYV+PRI
Sbjct: 778  PRTLYMALSGIREMSLITTPPPSRRPIQTHLGPLNQETIRAAICQELDRGGQVFYVVPRI 837

Query: 488  KGLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQN 547
            +G+EE    + E  P   +AI HG+  + +LE  M  F+ GE  IL+ T I+ESGLDI  
Sbjct: 838  EGIEEKSAAIREMVPSARLAIAHGQMEAGELESIMLTFSAGEADILVCTTIIESGLDIPR 897

Query: 548  ANTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKN----LLSDQALERLSALEE 603
             NTI+V+D  +FGL QLYQLRGRVGRA  +A+A+L YP K      L++ A++RL A++E
Sbjct: 898  VNTILVEDAHKFGLGQLYQLRGRVGRAGVQAHAWLFYPVKGDGQAALTEDAVKRLRAIKE 957

Query: 604  CRELGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVP 663
              +LG G+QLA RD+ IRG G I G QQ+G +  +G DL+ EML E++ +V    +  V 
Sbjct: 958  FTQLGSGYQLAMRDLEIRGAGDILGAQQSGQMNAIGFDLYTEMLQEAIQEVRGQEIPQV- 1016

Query: 664  YHSVQVDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRP 723
                QVD+ +   +PS+YI  L+  M           +D+  L +  E+   +YGK P P
Sbjct: 1017 -DDTQVDLILTAFIPSDYITDLDQKMSAYRAVASC--QDSEELSRIEEDWSDRYGKIPAP 1073

Query: 724  MEVLLKKLYLRRMAADIGINRI 745
             + LL+ + L+++A  +G  RI
Sbjct: 1074 AQQLLRVMELKQIAKKLGFARI 1095


>B5W2G2_SPIMA (tr|B5W2G2) Transcription-repair coupling factor OS=Arthrospira
            maxima CS-328 GN=AmaxDRAFT_2960 PE=4 SV=1
          Length = 1167

 Score =  546 bits (1406), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 293/622 (47%), Positives = 411/622 (66%), Gaps = 21/622 (3%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S +VDP  L+ GDYVVH++ GIG F+  K++    + E  +Y+ ++YADG  ++   Q  
Sbjct: 488  SKQVDPNRLQPGDYVVHRQHGIGKFV--KLESLTINQEIRDYLVLQYADGTLRVAADQVG 545

Query: 191  KM--LYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRP 248
             +  L R    +E+K P+ L+KL   + WEK + K   +I+K+ VDL++LY  R ++   
Sbjct: 546  TLSRLRR----SESKVPQ-LNKLTGKA-WEKSREKVGKSIKKLAVDLLKLYAERSQKTGF 599

Query: 249  PYPK-SPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALR 307
             YP+ +P   E    FPY+PTPDQ +   DV++D+ E + PMDRL+CGDVGFGKTEVA+R
Sbjct: 600  SYPQDTPWQQEMEDSFPYQPTPDQLKCSQDVKRDM-ESDRPMDRLVCGDVGFGKTEVAIR 658

Query: 308  AIRCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESI 367
            AI   V+A KQ   LAPT +L +QH+  + ERFA YP I++GLL+RF++ +EK+   + +
Sbjct: 659  AIFKAVTAGKQVAFLAPTTILTQQHYHTLKERFAPYP-IEIGLLNRFRSASEKKLIQQKL 717

Query: 368  KSGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPI 427
             +GE+DIIVGTHS+L   + + +LGLLVVDEEQRFGV QKEKI   KT VDVLTL+ATPI
Sbjct: 718  TTGEIDIIVGTHSVLSKHIKFRDLGLLVVDEEQRFGVNQKEKIKALKTHVDVLTLTATPI 777

Query: 428  PRTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRI 487
            PRTLY+AL+G R+ SLITTPPP R PI+THL   ++E + +AI  ELDRGGQVFYV+PRI
Sbjct: 778  PRTLYMALSGIREMSLITTPPPSRRPIQTHLGPLNQETIRAAICQELDRGGQVFYVVPRI 837

Query: 488  KGLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQN 547
            +G+EE    + E  P   +AI HG+  + +LE  M  F+ GE  IL+ T I+ESGLDI  
Sbjct: 838  EGIEEKSAAIREMVPSARLAIAHGQMEAGELESIMLTFSAGEADILVCTTIIESGLDIPR 897

Query: 548  ANTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKN----LLSDQALERLSALEE 603
             NTI+V+D  +FGL QLYQLRGRVGRA  +A+A+L YP K      L++ A++RL A++E
Sbjct: 898  VNTILVEDAHKFGLGQLYQLRGRVGRAGVQAHAWLFYPVKGDGQAALTEDAVKRLRAIKE 957

Query: 604  CRELGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVP 663
              +LG G+QLA RD+ IRG G I G QQ+G +  +G DL+ EML E++ +V    +  V 
Sbjct: 958  FTQLGSGYQLAMRDLEIRGAGDILGAQQSGQMNAIGFDLYTEMLQEAIQEVRGQEIPQV- 1016

Query: 664  YHSVQVDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRP 723
                QVD+ +   +PS+YI  L+  M           +D+  L +  E+   +YGK P P
Sbjct: 1017 -DDTQVDLILTAFIPSDYITDLDQKMSAYRAVASC--QDSEELSRIEEDWSDRYGKIPAP 1073

Query: 724  MEVLLKKLYLRRMAADIGINRI 745
             + LL+ + L+++A  +G  RI
Sbjct: 1074 AQQLLRVMELKQIAKKLGFARI 1095


>Q7U709_SYNPX (tr|Q7U709) Transcriptional-repair coupling factor OS=Synechococcus
            sp. (strain WH8102) GN=SYNW1177 PE=4 SV=1
          Length = 1192

 Score =  545 bits (1405), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 292/648 (45%), Positives = 417/648 (64%), Gaps = 17/648 (2%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGI-KMDVPKNSAEPTEYVFIEYADGMAKLPVKQS 189
            S  VDP  +R GD+VVH+  GIG F  + K+ V   S +  +Y+ ++YADG+ ++   Q 
Sbjct: 491  SRTVDPNKMRPGDFVVHRNHGIGRFKAMEKLAV---SGDVRDYLVVQYADGLLRVAADQL 547

Query: 190  SKMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPP 249
               L RY   +E   P  LSK+   + W K K + K A++K+ +DL++LY  R +     
Sbjct: 548  GS-LGRYRATSET--PPQLSKMGGAA-WTKAKERAKKAVRKVAMDLVKLYAERHQANGFA 603

Query: 250  YPK-SPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRA 308
            +P   P   E    FPYEPTPDQ +A  DV++D+ E+  PMDRL+CGDVGFGKTEVA+RA
Sbjct: 604  FPSDGPWQNELEESFPYEPTPDQLKATADVKRDM-EKAEPMDRLVCGDVGFGKTEVAIRA 662

Query: 309  IRCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIK 368
            I   ++A KQ  +LAPT VLA+QH+  +SERFA YP IKV LL+RF+T +E++  LE +K
Sbjct: 663  IFKAITAGKQVAMLAPTTVLAQQHWRTLSERFAPYP-IKVALLNRFRTASERKTILEGLK 721

Query: 369  SGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIP 428
             G +D +VGTH LLG    +  LGLLVVDEEQRFGV QKEKI   +  VDVLTLSATPIP
Sbjct: 722  GGTIDAVVGTHQLLGKGASFQQLGLLVVDEEQRFGVNQKEKIKVLRKDVDVLTLSATPIP 781

Query: 429  RTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIK 488
            RTLY++L+G R+ SLITTPPP R PIKTHL++   E V SAI+ ELDRGGQVFYV+PR++
Sbjct: 782  RTLYMSLSGVREMSLITTPPPLRRPIKTHLAALDPEAVRSAIRQELDRGGQVFYVVPRVE 841

Query: 489  GLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNA 548
            G+E+V   L E  P +++ + HG+    +LE  M  F  GE  +++ T IVESGLDI   
Sbjct: 842  GIEDVAAGLREMLPGLKLLVAHGQMAEGELESAMVAFNAGEADVMLCTTIVESGLDIPRV 901

Query: 549  NTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELG 608
            NTI+++D  +FGLAQLYQLRGRVGR+  +A+A+L YP    LSD A +RL A++E  +LG
Sbjct: 902  NTILIEDAHRFGLAQLYQLRGRVGRSGIQAHAWLFYPGNGSLSDNARQRLRAIQEFAQLG 961

Query: 609  QGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQ 668
             G+QLA RDM IRG G + G +Q+G +  +G DL+ EML ESL++++   + +V     Q
Sbjct: 962  SGYQLAMRDMEIRGVGNLLGVEQSGQMETIGFDLYMEMLQESLAEIQGQDIPSV--DDTQ 1019

Query: 669  VDININPHLPSEYINHLENPMEIINEAERVAE-KDTWSLMQFTENLRRQYGKEPRPMEVL 727
            VD+ +   +P+++I    +P E I      A+ +   +L++       +YG  P  ++ L
Sbjct: 1020 VDLPVTAFVPADWIT---DPDEKIAAYRAAADCRSGEALVELAAGWADRYGALPAAVQSL 1076

Query: 728  LKKLYLRRMAADIGINRIYSSGKTVFMKANITKKVFKMMTDSMTSDIY 775
            L+ + L+ +A   G+ RI      + ++  + +  F+++   +   ++
Sbjct: 1077 LQLMELKLLAKRCGVARIKPEKPNIVLETPMEEPAFRLLRQGLPQHLH 1124


>A3ZAV0_9SYNE (tr|A3ZAV0) Transcriptional-repair coupling factor OS=Synechococcus
            sp. RS9917 GN=RS9917_00225 PE=4 SV=1
          Length = 1184

 Score =  545 bits (1404), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 291/646 (45%), Positives = 412/646 (63%), Gaps = 13/646 (2%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S  VDP  +R GDYVVH+  GIG F   K++    S E  +Y+ ++YADG+ ++   Q  
Sbjct: 483  SRTVDPNKMRPGDYVVHRNHGIGRFQ--KLEKLAISGEVRDYLVVQYADGLLRVAADQLG 540

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
              L R+   ++   P  LSK+   S W K K +   A++K+ +DL++LY  R +     +
Sbjct: 541  S-LGRFRANSDT--PPQLSKMGG-SAWVKAKERASKAVRKVALDLVKLYAERHQAPGFAF 596

Query: 251  P-KSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
            P   P   E    FPYEPTPDQ +A  DV++D+ E+  PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 597  PGDGPWQEELEDSFPYEPTPDQLKATADVKRDM-EQPQPMDRLVCGDVGFGKTEVAIRAI 655

Query: 310  RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKS 369
               ++A KQ  +LAPT VLA+QH+  +SERFA YP IKV LL+RF+T +E++  LE +K 
Sbjct: 656  FKAITAGKQVAMLAPTTVLAQQHWRTLSERFAPYP-IKVALLNRFRTASERKAILEGLKQ 714

Query: 370  GELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPR 429
            G +D +VGTH LL     +  LGLLVVDEEQRFGV QKEKI   +  VDVLTLSATPIPR
Sbjct: 715  GTIDAVVGTHQLLSKSTSFDKLGLLVVDEEQRFGVNQKEKIKALRKDVDVLTLSATPIPR 774

Query: 430  TLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKG 489
            TLY++L+G R+ SLITTPPP R PIKTHL++  +E V SAI+ ELDRGGQVFYV+PR++G
Sbjct: 775  TLYMSLSGVREMSLITTPPPLRRPIKTHLAALDEEAVRSAIRQELDRGGQVFYVVPRVEG 834

Query: 490  LEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNAN 549
            +EEV   L +  P +++ + HG+    +LE  M  F  GE  +++ T IVESGLDI   N
Sbjct: 835  IEEVAAQLRQMLPGLKLLVAHGQMAEGELESAMVAFNGGEADVMLCTTIVESGLDIPRVN 894

Query: 550  TIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQ 609
            TI+++D  +FGLAQLYQLRGRVGR+  +A+A+L YP    LSD A +RL A++E  +LG 
Sbjct: 895  TILIEDAHRFGLAQLYQLRGRVGRSGIQAHAWLFYPGDASLSDAARQRLRAIQEFAQLGS 954

Query: 610  GFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQV 669
            G+QLA RDM IRG G + G +Q+G +  +G DL+ EML ESL++++   + AV     QV
Sbjct: 955  GYQLAMRDMEIRGVGNLLGVEQSGQMEAIGFDLYMEMLQESLAEIQGQDIPAV--DDTQV 1012

Query: 670  DININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLLK 729
            D+ +   LP+++I   +  M     A      +  +L+        +YG  P P++ LL+
Sbjct: 1013 DLQVTAFLPADWITDSDEKMAAYRAAAECTSAE--ALVDLAATWADRYGALPGPVQSLLQ 1070

Query: 730  KLYLRRMAADIGINRIYSSGKTVFMKANITKKVFKMMTDSMTSDIY 775
             + L+ +A   G +RI      + ++  + +  F+++   +   ++
Sbjct: 1071 LMDLKLLAKRCGFSRIRPEKPNIALETPMEEPAFRLLRQGLPQHLH 1116


>H1WGN5_9CYAN (tr|H1WGN5) Transcription-repair-coupling factor OS=Arthrospira sp.
            PCC 8005 GN=mfd PE=4 SV=1
          Length = 1167

 Score =  545 bits (1403), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 293/622 (47%), Positives = 410/622 (65%), Gaps = 21/622 (3%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S +VDP  L+ GDYVVH++ GIG F+  K++    + E  +Y+ ++YADG  ++   Q  
Sbjct: 488  SKQVDPNRLQPGDYVVHRQHGIGKFV--KLESLTINQEIRDYLVLQYADGTLRVAADQVG 545

Query: 191  KM--LYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRP 248
             +  L R    +E+K P+ L+KL   + WEK + K   +I+K+ VDL++LY  R ++   
Sbjct: 546  TLSRLRR----SESKVPQ-LNKLTGKA-WEKSREKVGKSIKKLAVDLLKLYAERSQKTGF 599

Query: 249  PYPK-SPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALR 307
             YP  +P   E    FPY+PTPDQ +   DV++D+ E + PMDRL+CGDVGFGKTEVA+R
Sbjct: 600  SYPDDTPWQQEMEDSFPYQPTPDQLKCSQDVKRDM-ESDRPMDRLVCGDVGFGKTEVAIR 658

Query: 308  AIRCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESI 367
            AI   V+A KQ   LAPT +L +QH+  + ERFA YP I++GLL+RF++ +EK+   + +
Sbjct: 659  AIFKAVTAGKQVAFLAPTTILTQQHYHTLKERFAPYP-IEIGLLNRFRSASEKKLIQQKL 717

Query: 368  KSGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPI 427
             +GE+DIIVGTHS+L   + + +LGLLVVDEEQRFGV QKEKI   KT VDVLTL+ATPI
Sbjct: 718  TTGEIDIIVGTHSVLSKHIKFRDLGLLVVDEEQRFGVNQKEKIKALKTHVDVLTLTATPI 777

Query: 428  PRTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRI 487
            PRTLY+AL+G R+ SLITTPPP R PI+THL   ++E + +AI  ELDRGGQVFYV+PRI
Sbjct: 778  PRTLYMALSGIREMSLITTPPPSRRPIQTHLGPLNQETIRAAICQELDRGGQVFYVVPRI 837

Query: 488  KGLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQN 547
            +G+EE    + E  P   +AI HG+  + +LE  M  F+ GE  IL+ T I+ESGLDI  
Sbjct: 838  EGIEEKSAAIREMVPSARLAIAHGQMEAGELESIMLTFSAGEADILVCTTIIESGLDIPR 897

Query: 548  ANTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKN----LLSDQALERLSALEE 603
             NTI+V+D  +FGL QLYQLRGRVGRA  +A+A+L YP K      L++ A++RL A++E
Sbjct: 898  VNTILVEDAHKFGLGQLYQLRGRVGRAGVQAHAWLFYPVKGDGQAALTEDAVKRLRAIKE 957

Query: 604  CRELGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVP 663
              +LG G+QLA RD+ IRG G I G QQ+G +  +G DL+ EML E++ +V    +  V 
Sbjct: 958  FTQLGSGYQLAMRDLEIRGAGDILGAQQSGQMNAIGFDLYTEMLQEAIQEVRGQEIPQV- 1016

Query: 664  YHSVQVDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRP 723
                QVD+ +   +PS+YI  L+  M           +D+  L +  E+   +YGK P P
Sbjct: 1017 -DDTQVDLILTAFIPSDYITDLDQKMSAYRAVASC--QDSEELSRIEEDWSDRYGKIPAP 1073

Query: 724  MEVLLKKLYLRRMAADIGINRI 745
             + LL+ + L+++A  +G  RI
Sbjct: 1074 AQQLLRVMELKQIAKKLGFARI 1095


>K9P3C5_CYAGP (tr|K9P3C5) Transcription-repair coupling factor Mfd OS=Cyanobium
            gracile (strain ATCC 27147 / PCC 6307) GN=Cyagr_0694 PE=4
            SV=1
          Length = 1196

 Score =  545 bits (1403), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 289/656 (44%), Positives = 418/656 (63%), Gaps = 18/656 (2%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S  VDP  +  GD+VVH+  GIG F+  K++      E  +Y+ ++YADG+ ++   Q  
Sbjct: 495  SRTVDPNKMLPGDFVVHRNHGIGRFL--KLEKLAIGGEARDYLVVQYADGLLRVAADQLG 552

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
              L RY   +++  P  L+++  T+ W K K + + A+ K+ +DL++LY  R K   P +
Sbjct: 553  S-LGRYRASSDS--PPELNRMGGTA-WTKAKERARKAVAKVAMDLVKLYAERHKA--PGF 606

Query: 251  ---PKSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALR 307
               P  P   E    FPY+PTPDQ +A +DV++D+ ER+ PMDRL+CGDVGFGKTEVA+R
Sbjct: 607  AFPPDGPWQGELEDSFPYDPTPDQLKAIVDVKRDM-ERDQPMDRLVCGDVGFGKTEVAIR 665

Query: 308  AIRCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESI 367
            AI   V+A KQ  +LAPT VLA+QH+  +SERFA YP +KV LL+RF+T AE++  L+ +
Sbjct: 666  AIFKAVTAGKQCALLAPTTVLAQQHWRTLSERFAPYP-LKVALLNRFRTAAERKTILDDL 724

Query: 368  KSGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPI 427
              G  D++VGTH LLG    +  LGLLVVDEEQRFGV QKEKI   +  VDVLTLSATPI
Sbjct: 725  AKGNTDVVVGTHQLLGKGTAFRQLGLLVVDEEQRFGVNQKEKIKALRKDVDVLTLSATPI 784

Query: 428  PRTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRI 487
            PRTLY++L+G R+ SLITTPPP R PIKTHL+S  +E V SAI+ ELDRGGQVFYV+PR+
Sbjct: 785  PRTLYMSLSGVREMSLITTPPPLRRPIKTHLASLDEEAVRSAIRQELDRGGQVFYVVPRV 844

Query: 488  KGLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQN 547
            +G+EEV   L    P + + + HG+    +LE  M  F  GE  +++ T I+ESGLDI  
Sbjct: 845  EGIEEVAGQLRAMLPGLRLQVAHGQMPEGELESAMVAFNAGEADVMLCTTIIESGLDIPR 904

Query: 548  ANTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECREL 607
             NTI+V+D  +FGLAQLYQLRGRVGR+  +A+A+L YP    LS+ A +RL A++E  +L
Sbjct: 905  VNTILVEDAHRFGLAQLYQLRGRVGRSGIQAHAWLFYPGDASLSEAARQRLRAIQEFAQL 964

Query: 608  GQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSV 667
            G G+QLA RDM IRG G + G +Q+G +  +G DL+ EML + L++++   + AV     
Sbjct: 965  GSGYQLAMRDMEIRGVGNLLGVEQSGQMEAIGFDLYMEMLQDCLAEIQGQDIPAV--DET 1022

Query: 668  QVDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVL 727
            Q+D+ +   +P+++I   +  M     A     K   +L++       +YG  P P++ L
Sbjct: 1023 QIDLPVTAFIPADWITEADEKMAAYRAAAECGGKA--ALVELAAGWADRYGPIPAPVQSL 1080

Query: 728  LKKLYLRRMAADIGINRIYSSGKTVFMKANITKKVFKMMTDSMTSDIYRNSLVLEG 783
            L+ + L+ +A   G +RI      + ++  + +  F+ +  ++   ++   LV +G
Sbjct: 1081 LELMELKLLARRCGFSRIKPEKPNIALETPMEEPAFRRLRQALPQHLH-GRLVYQG 1135


>D4ZXG2_SPIPL (tr|D4ZXG2) Transcriptional-repair coupling factor OS=Arthrospira
            platensis NIES-39 GN=NIES39_L00760 PE=4 SV=1
          Length = 1167

 Score =  544 bits (1401), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 292/622 (46%), Positives = 409/622 (65%), Gaps = 21/622 (3%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S +VDP  L+ GDYVVH++ GIG F+  K++    S E  +Y+ ++YADG  ++   Q  
Sbjct: 488  SKQVDPNRLQPGDYVVHRQHGIGKFV--KLESLTISQEIRDYLVLQYADGTLRVAADQVG 545

Query: 191  KM--LYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRP 248
             +  L R    +E+K P+ L+KL   + WEK + K + +++K+ VDL++LY  R ++   
Sbjct: 546  TLSRLRR----SESKVPQ-LNKLTGKA-WEKNREKVRKSVKKLAVDLLKLYAERSQKTGF 599

Query: 249  PYPK-SPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALR 307
             YP  +P   E    FPY+PTPDQ +   DV++D+ E + PMDRL+CGDVGFGKTEVA+R
Sbjct: 600  SYPHDTPWQQEMEDSFPYKPTPDQLKCSQDVKRDM-ESDRPMDRLVCGDVGFGKTEVAIR 658

Query: 308  AIRCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESI 367
            AI   V+  KQ   LAPT +L +QH+  + ERFA YP I++GLL+RF++ +EK+   + +
Sbjct: 659  AIFKAVTGGKQVAFLAPTTILTQQHYHTLKERFAPYP-IEIGLLNRFRSASEKKLIQQKL 717

Query: 368  KSGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPI 427
             +GE+DIIVGTHS+L   + + +LGLLVVDEEQRFGV QKEKI   KT VDVLTL+ATPI
Sbjct: 718  ITGEIDIIVGTHSVLSKHIKFRDLGLLVVDEEQRFGVNQKEKIKALKTHVDVLTLTATPI 777

Query: 428  PRTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRI 487
            PRTLY+AL+G R+ SLITTPPP R PIKTHL   ++E + +AI  ELDRGGQVFYV+PRI
Sbjct: 778  PRTLYMALSGIREMSLITTPPPSRRPIKTHLGPLNQETIRAAICQELDRGGQVFYVVPRI 837

Query: 488  KGLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQN 547
            +G+EE    + E  P   +AI HG+  + +LE  M  F+ GE  IL+ T I+ESGLDI  
Sbjct: 838  EGIEEKSAAIREMVPSARLAIAHGQMEAGELESIMLTFSAGEADILVCTTIIESGLDIPR 897

Query: 548  ANTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKN----LLSDQALERLSALEE 603
             NTI+V+D  +FGL QLYQLRGRVGRA  +A+A+L YP K      L++ A++RL A++E
Sbjct: 898  VNTILVEDAHKFGLGQLYQLRGRVGRAGAQAHAWLFYPIKGDGQAALTEDAVKRLRAIKE 957

Query: 604  CRELGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVP 663
              +LG G+QLA RD+ IRG G I G QQ+G +  +G DL+ EML E++ +V    +  V 
Sbjct: 958  FTQLGSGYQLAMRDLEIRGAGDILGAQQSGQMNAIGFDLYTEMLQEAIQEVRGQEIPQV- 1016

Query: 664  YHSVQVDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRP 723
                QVD+ +   +PS+YI  L+  M           +D+  L +  E+   +YG  P P
Sbjct: 1017 -DDTQVDLILTAFIPSDYITDLDQKMSAYRAVASC--QDSEELSRIEEDWSDRYGTIPAP 1073

Query: 724  MEVLLKKLYLRRMAADIGINRI 745
             + LL+ + L+++A  +G  RI
Sbjct: 1074 AQQLLRVMELKQIAKKLGFARI 1095


>K6E281_SPIPL (tr|K6E281) Transcription-repair coupling factor OS=Arthrospira
            platensis str. Paraca GN=APPUASWS_08085 PE=4 SV=1
          Length = 1152

 Score =  543 bits (1400), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 292/622 (46%), Positives = 409/622 (65%), Gaps = 21/622 (3%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S +VDP  L+ GDYVVH++ GIG F+  K++    S E  +Y+ ++YADG  ++   Q  
Sbjct: 473  SKQVDPNRLQPGDYVVHRQHGIGKFV--KLESLTISQEIRDYLVLQYADGTLRVAADQVG 530

Query: 191  KM--LYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRP 248
             +  L R    +E+K P+ L+KL   + WEK + K + +++K+ VDL++LY  R ++   
Sbjct: 531  TLSRLRR----SESKVPQ-LNKLTGKA-WEKNREKVRKSVKKLAVDLLKLYAERSQKTGF 584

Query: 249  PYPK-SPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALR 307
             YP  +P   E    FPY+PTPDQ +   DV++D+ E + PMDRL+CGDVGFGKTEVA+R
Sbjct: 585  SYPHDTPWQQEMEDSFPYKPTPDQLKCSQDVKRDM-ESDRPMDRLVCGDVGFGKTEVAIR 643

Query: 308  AIRCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESI 367
            AI   V+  KQ   LAPT +L +QH+  + ERFA YP I++GLL+RF++ +EK+   + +
Sbjct: 644  AIFKAVTGGKQVAFLAPTTILTQQHYHTLKERFAPYP-IEIGLLNRFRSASEKKLIQQKL 702

Query: 368  KSGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPI 427
             +GE+DIIVGTHS+L   + + +LGLLVVDEEQRFGV QKEKI   KT VDVLTL+ATPI
Sbjct: 703  ITGEIDIIVGTHSVLSKHIKFRDLGLLVVDEEQRFGVNQKEKIKALKTHVDVLTLTATPI 762

Query: 428  PRTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRI 487
            PRTLY+AL+G R+ SLITTPPP R PIKTHL   ++E + +AI  ELDRGGQVFYV+PRI
Sbjct: 763  PRTLYMALSGIREMSLITTPPPSRRPIKTHLGPLNQETIRAAICQELDRGGQVFYVVPRI 822

Query: 488  KGLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQN 547
            +G+EE    + E  P   +AI HG+  + +LE  M  F+ GE  IL+ T I+ESGLDI  
Sbjct: 823  EGIEEKSAAIREMVPSARLAIAHGQMEAGELESIMLTFSAGEADILVCTTIIESGLDIPR 882

Query: 548  ANTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKN----LLSDQALERLSALEE 603
             NTI+V+D  +FGL QLYQLRGRVGRA  +A+A+L YP K      L++ A++RL A++E
Sbjct: 883  VNTILVEDAHKFGLGQLYQLRGRVGRAGAQAHAWLFYPIKGDGQAALTEDAVKRLRAIKE 942

Query: 604  CRELGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVP 663
              +LG G+QLA RD+ IRG G I G QQ+G +  +G DL+ EML E++ +V    +  V 
Sbjct: 943  FTQLGSGYQLAMRDLEIRGAGDILGAQQSGQMNAIGFDLYTEMLQEAIQEVRGQEIPQV- 1001

Query: 664  YHSVQVDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRP 723
                QVD+ +   +PS+YI  L+  M           +D+  L +  E+   +YG  P P
Sbjct: 1002 -DDTQVDLILTAFIPSDYITDLDQKMSAYRAVASC--QDSEELSRIEEDWSDRYGTIPAP 1058

Query: 724  MEVLLKKLYLRRMAADIGINRI 745
             + LL+ + L+++A  +G  RI
Sbjct: 1059 AQQLLRVMELKQIAKKLGFARI 1080


>A3YY58_9SYNE (tr|A3YY58) Transcription-repair coupling factor OS=Synechococcus sp.
            WH 5701 GN=WH5701_08159 PE=4 SV=1
          Length = 1187

 Score =  543 bits (1398), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 285/654 (43%), Positives = 420/654 (64%), Gaps = 14/654 (2%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S  VDP  +R GD+VVH+  GIG F+  +++    S E  +Y+ ++YADG+ ++   Q  
Sbjct: 486  SRTVDPNKMRPGDFVVHRNHGIGRFL--RLEKLAISGESRDYLVVQYADGLLRVAADQLG 543

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
              L R+    ++  P  L+++   + W + K + + A++K+ +DL++LY  R +    P+
Sbjct: 544  S-LGRFRASTDS--PPELNRMAGVA-WTRAKERARKAVRKVAMDLVKLYAERQQAAGFPF 599

Query: 251  PK-SPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
            P   P   E    FPYEPTPDQ +A  +V++D+ E+  PMDRL+CGDVGFGKTEVA+RA+
Sbjct: 600  PADGPWQGELEDSFPYEPTPDQVKAIAEVKRDM-EKPEPMDRLVCGDVGFGKTEVAIRAV 658

Query: 310  RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKS 369
               V+A KQ  +LAPT VLA+QH+  +SERFA YP +KV LL+RF+T AE++  L+ ++ 
Sbjct: 659  FKAVTAGKQCALLAPTTVLAQQHWRTLSERFAPYP-LKVALLNRFRTTAERKTILDGLRD 717

Query: 370  GELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPR 429
            G +D++VGTH LL     +  LGLLVVDEEQRFGV QKEKI   +  VDVLTLSATPIPR
Sbjct: 718  GTVDVVVGTHQLLSKGTSFEKLGLLVVDEEQRFGVNQKEKIKALRKDVDVLTLSATPIPR 777

Query: 430  TLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKG 489
            TLY++L+G R+ SLITTPPP R PIKTHL++  +E V SAI+ ELDRGGQVFYV+PR++G
Sbjct: 778  TLYMSLSGVREMSLITTPPPLRRPIKTHLAALDEEAVRSAIRQELDRGGQVFYVVPRVEG 837

Query: 490  LEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNAN 549
            +EEV   L E  P +++ + HG+    +LE  M  F  GE  +++ T I+ESGLDI   N
Sbjct: 838  IEEVAGQLREMLPGLKLLVAHGQMGEGELESAMVAFNAGEADVMLCTTIIESGLDIPRVN 897

Query: 550  TIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQ 609
            TI+V+D  +FGLAQLYQLRGRVGR+  +A+A+L YP    LS+ A +RL A++E  +LG 
Sbjct: 898  TILVEDAHKFGLAQLYQLRGRVGRSGVQAHAWLFYPGDASLSEAARQRLRAIQEFAQLGS 957

Query: 610  GFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQV 669
            G+QLA RDM IRG G + G +Q+G +  +G DL+ EML ESL++++   +  V     Q+
Sbjct: 958  GYQLAMRDMEIRGVGNLLGVEQSGQMETIGFDLYMEMLQESLAEIQGQDIPVV--EETQI 1015

Query: 670  DININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLLK 729
            D+ I   +P+++I   +  M     A     ++   L+Q   +   +YG  P P+  LL+
Sbjct: 1016 DLPITAFIPADWIPESDEKMAAYRAAADCRTRE--ELVQLAADWVDRYGALPSPVASLLQ 1073

Query: 730  KLYLRRMAADIGINRIYSSGKTVFMKANITKKVFKMMTDSMTSDIYRNSLVLEG 783
             + L+ +A   G +RI      + ++  + +  F+++   +   ++   LV +G
Sbjct: 1074 LMELKLLARRCGFSRIRLEKPNIVLETPMEEPAFRLLRQGLPQHLH-GRLVYQG 1126


>M1X2W9_9NOST (tr|M1X2W9) Transcription-repair coupling factor OS=Richelia
            intracellularis HH01 GN=RINTHH_14000 PE=4 SV=1
          Length = 1156

 Score =  543 bits (1398), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 291/622 (46%), Positives = 401/622 (64%), Gaps = 15/622 (2%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S +VDP  L  GDYVVH+  G+G F+ ++     N  E  +Y+ ++YADG+ +L   Q  
Sbjct: 478  SKQVDPNKLHPGDYVVHRNHGVGKFLRLESLTLNN--ETRDYLVVQYADGLLRLVTDQLG 535

Query: 191  KM-LYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPP 249
             +   RY     +K P+ L+K+    VWE  K K +  ++K+ VDL+ LY  R K+    
Sbjct: 536  TLSRLRY---TTSKTPQ-LNKMTG-KVWENTKNKVRKTVKKLAVDLLALYAARAKREGFS 590

Query: 250  YPKSPAMA-EFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRA 308
            YPK+ A   E    FPY+PT DQ +A  DV++D+ E   PMDRLICGDVGFGKTEVA+RA
Sbjct: 591  YPKNMAWQQEMEDSFPYQPTTDQLRAVQDVKQDM-ESTRPMDRLICGDVGFGKTEVAIRA 649

Query: 309  IRCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIK 368
            I   V+A KQ  +LAPT +L +QH+  + ERFA YP I +GLL+RF++  E+ E  + + 
Sbjct: 650  IFKAVTAGKQVALLAPTTILTQQHYHTLKERFAPYP-IHIGLLNRFRSTEERREIQKRLT 708

Query: 369  SGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIP 428
            SGELD++VGTH LLG  V + +LGLLVVDEEQRFGV QKEKI + KT VDVLTLSATP+P
Sbjct: 709  SGELDVVVGTHQLLGKSVSFKDLGLLVVDEEQRFGVNQKEKIKSLKTQVDVLTLSATPVP 768

Query: 429  RTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIK 488
            RTLY++L+G R+ SLITTPPP R PIKTHLS    E + SAI+ ELDR GQVFYV+ R++
Sbjct: 769  RTLYMSLSGIREISLITTPPPSRRPIKTHLSPMLTETIRSAIRLELDRCGQVFYVVSRVE 828

Query: 489  GLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNA 548
            G+EE    + +  P+V++   HG+    +LE  M  F+ GE  +L+ T I+ESGLDI   
Sbjct: 829  GIEEKSASIRKMIPEVKLITAHGQMDPGELESVMLTFSNGEANVLVCTTIIESGLDIPRV 888

Query: 549  NTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELG 608
            NTI+++D  +FGL+QLYQLRGRVGRA  +A+A+L YP K +LSD A  RL A++E  +LG
Sbjct: 889  NTILIEDAHRFGLSQLYQLRGRVGRAGIQAHAWLFYPQKQVLSDTARNRLRAIKELTQLG 948

Query: 609  QGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQ 668
             G+QLA RDM IRG G + G +Q+G +  +G DL+ EML E++ ++    +  V     Q
Sbjct: 949  SGYQLAMRDMEIRGVGNLLGVEQSGQMDIIGFDLYMEMLEEAIREIRGQEIPKV--EDTQ 1006

Query: 669  VDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLL 728
            VD+NI   +PS+YI  ++  M           ++   L +       +YGK P+P   LL
Sbjct: 1007 VDLNITAMIPSDYIPDIDQKMSAYRTIALAKSRE--DLAKIAVEWGDRYGKVPKPTTQLL 1064

Query: 729  KKLYLRRMAADIGINRIYSSGK 750
            + + L+++A  +G  RI    K
Sbjct: 1065 RVMELKQVAKRLGFVRIKPENK 1086


>A2C299_PROM1 (tr|A2C299) Transcriptional-repair coupling factor OS=Prochlorococcus
            marinus (strain NATL1A) GN=mfd PE=4 SV=1
          Length = 1167

 Score =  543 bits (1398), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 298/659 (45%), Positives = 434/659 (65%), Gaps = 19/659 (2%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGI-KMDVPKNSAEPTEYVFIEYADGMAKLPVKQS 189
            S K+DP  ++ GDYVVH+  GIG+F  I K+++   + E  +Y+ I+Y DG   +   Q 
Sbjct: 490  SKKIDPNKMKPGDYVVHRNHGIGLFQKIEKLNI---NGESRDYLVIKYMDGKLSVAADQL 546

Query: 190  SKMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPP 249
               L RY   + N K   +SKL   + W K K K K +++K+ +DL++LY  R K++   
Sbjct: 547  GS-LGRY--RSSNAKTPTISKLGGAN-WNKIKEKAKKSVKKVAIDLIKLYAERSKEKGYK 602

Query: 250  YP-KSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRA 308
            +P   P  +E    FPY  TPDQ  A   V+ D+ E E PMDRL+CGDVGFGKTEVA+RA
Sbjct: 603  FPCDGPWQSELEDSFPYALTPDQATATSQVKSDM-ESEKPMDRLVCGDVGFGKTEVAIRA 661

Query: 309  IRCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIK 368
            I   +++ KQ  +LAPT VL++QH+  IS+RFA YP IKV LL+RF+T +EK+  +  +K
Sbjct: 662  IFKAITSGKQIALLAPTTVLSQQHWRTISDRFAPYP-IKVSLLNRFKTNSEKKHIVSGLK 720

Query: 369  SGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIP 428
            +G++D +VGTH LL  ++VY +LGLLV+DEEQRFGV QKEKI   K SVDVLTLSATPIP
Sbjct: 721  AGQIDAVVGTHQLLNKKLVYKDLGLLVIDEEQRFGVNQKEKIKELKKSVDVLTLSATPIP 780

Query: 429  RTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIK 488
            RTLY++L+G R+ SLITTPPP R PIKTHL+    E + SAI  E+DRGGQ+FY++PRIK
Sbjct: 781  RTLYMSLSGVREMSLITTPPPLRRPIKTHLAPLDNEIIRSAISQEIDRGGQIFYIVPRIK 840

Query: 489  GLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNA 548
            G+E+V E L+   P+V++ I HG+     LE+ M  F  GE  IL+ T IVESGLDI   
Sbjct: 841  GIEDVAEKLKIMIPNVKLLIAHGQMEEGALENAMLAFNAGEADILLCTTIVESGLDIPRV 900

Query: 549  NTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELG 608
            NTI+++D  +FGL+QLYQLRGRVGR+  +A+A+L YP    L++ + +RL A++E  +LG
Sbjct: 901  NTILIEDSHKFGLSQLYQLRGRVGRSGVQAHAWLFYPSDEKLNETSRQRLKAIKEFSDLG 960

Query: 609  QGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQ 668
             G+QLA RDM IRG G I G +Q+G +  +G DL+ E+L E++++++   + +V     Q
Sbjct: 961  SGYQLAMRDMEIRGVGNILGIEQSGQMETIGFDLYMELLQETIAEIQGQDIPSV--DDTQ 1018

Query: 669  VDININPHLPSEYINHLENPMEIINEAERVAEK--DTWSLMQFTENLRRQYGKEPRPMEV 726
            +D+ +   +P ++I    +P E IN A R+A +  +  SL+QF  NL  +YG  P+ +E 
Sbjct: 1019 IDLPVTAFIPGDWIT---DPDEKIN-AYRLATQCENNDSLVQFASNLVDRYGTLPKAVES 1074

Query: 727  LLKKLYLRRMAADIGINRIYSSGKTVFMKANITKKVFKMMTDSMTSDIYRNSLVLEGDQ 785
            L++ + L+ +A   G +RI  S   V ++  + +  FK++   + + ++   +  +GD+
Sbjct: 1075 LIEVMKLKIIAKKCGFSRIKLSKPNVELETMMDEPAFKLLRKGLANHLHGRFIYKKGDR 1133


>Q7V7H1_PROMM (tr|Q7V7H1) Transcriptional-repair coupling factor OS=Prochlorococcus
            marinus (strain MIT 9313) GN=PMT_0775 PE=4 SV=1
          Length = 1193

 Score =  543 bits (1398), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 290/658 (44%), Positives = 424/658 (64%), Gaps = 17/658 (2%)

Query: 134  VDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSSKML 193
            VDP  + +GD+VVH+  GIG F+  K++    S E  +Y+ IEY DG   +   Q    L
Sbjct: 495  VDPNKMCSGDFVVHRNHGIGRFL--KLEKLAISGEVRDYLVIEYLDGTLSVAADQLGS-L 551

Query: 194  YRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY--- 250
             RY   +E+  P  L+++  T+ W+K K + +  ++K+ +DL++LY  RL+   P Y   
Sbjct: 552  GRYRSTSES--PPKLNRMGGTT-WQKVKERTRKLVRKVAMDLVKLYAERLQA--PGYAFP 606

Query: 251  PKSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAIR 310
            P  P   E    FPYEPTPDQ +A +DV++D+ E   PMDRL+CGDVGFGKTEVA+RAI 
Sbjct: 607  PDGPWQIELEESFPYEPTPDQVKAVVDVKRDM-EAAQPMDRLVCGDVGFGKTEVAIRAIF 665

Query: 311  CVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKSG 370
              +++ +Q  +LAPT VLA+QH+  +S+RFA YP IKV LL+RF+T +E++  L  +K G
Sbjct: 666  KAITSGRQIAMLAPTTVLAQQHWRTLSDRFAPYP-IKVALLNRFRTSSERKSILNGLKEG 724

Query: 371  ELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPRT 430
             +D +VGTH LL     +  LGLLVVDEEQRFGV QKEKI   +  VDVLTLSATPIPRT
Sbjct: 725  TIDAVVGTHQLLSKNTTFQKLGLLVVDEEQRFGVNQKEKIKALRKDVDVLTLSATPIPRT 784

Query: 431  LYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKGL 490
            LY++L+G R+ SLITTPPP R PIKTHL++F +E V S+I+ ELDRGGQVFYV+PR++G+
Sbjct: 785  LYMSLSGVREMSLITTPPPLRRPIKTHLAAFDEEAVRSSIRQELDRGGQVFYVVPRVEGI 844

Query: 491  EEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNANT 550
            E+V   L++  PD+++ + HG+    +LE +M  F  GE  +++ T IVESGLDI   NT
Sbjct: 845  EDVARQLQQMLPDLKLLVAHGQMAEGELESSMVAFNAGEADLMLCTTIVESGLDIPRVNT 904

Query: 551  IIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQG 610
            I+++D  +FGLAQLYQLRGRVGR+  +A+A+L YP    LSD A +RL A++E  +LG G
Sbjct: 905  ILIEDAHKFGLAQLYQLRGRVGRSGVQAHAWLFYPGDASLSDTARQRLRAIQEFAQLGSG 964

Query: 611  FQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQVD 670
            +QLA RDM IRG G + G +Q+G +  +G DL+ EML ESL++++   + +V     Q+D
Sbjct: 965  YQLAMRDMEIRGVGNLLGVEQSGQMETIGFDLYMEMLQESLAEIQGQGIPSV--DDTQID 1022

Query: 671  ININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLLKK 730
            + +   +P+E+I  ++   +I             SL++   +   +YG  P P++ LL+ 
Sbjct: 1023 LPVTAFVPAEWI--VDGDEKIAAYRAAANCASHESLIELAASWTDRYGAIPGPVQSLLQL 1080

Query: 731  LYLRRMAADIGINRIYSSGKTVFMKANITKKVFKMMTDSMTSDIYRNSLVLEGDQIKA 788
            + L+ +A   GI+RI      + M+  + +  F+++   +   ++   +   G   KA
Sbjct: 1081 MELKLLARRCGISRIKPEKPNIAMETPMEEPAFRLLRQGLPQHLHGRLIYQTGSGNKA 1138


>Q3AK28_SYNSC (tr|Q3AK28) Transcription-repair coupling factor OS=Synechococcus sp.
            (strain CC9605) GN=Syncc9605_1300 PE=4 SV=1
          Length = 1192

 Score =  542 bits (1397), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 293/659 (44%), Positives = 421/659 (63%), Gaps = 15/659 (2%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S  VDP  +R GD+VVH+  GIG F    M+    S +  +Y+ ++YADG+ ++   Q  
Sbjct: 491  SRTVDPNKMRPGDFVVHRNHGIGRFKA--MEKLAMSGDIRDYLVVQYADGILRVAADQLG 548

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
              L RY   +E   P  L+++  T+ W K K + K A++K+ +DL++LY  R +     +
Sbjct: 549  S-LGRYRATSET--PPQLNRMGGTA-WNKAKERAKKAVRKVALDLVKLYAERQQAAGFAF 604

Query: 251  PK-SPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
            P   P   E    FPY+PTPDQ +A  DV++D+ ER+ PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 605  PTDGPWQVEMEESFPYDPTPDQLKATADVKRDM-ERQEPMDRLVCGDVGFGKTEVAIRAI 663

Query: 310  RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKS 369
               ++A KQ  +LAPT VLA+QH+  +SERFA YP IKV LL+RF+T +E++  L+ +K 
Sbjct: 664  FKAITAGKQVAMLAPTTVLAQQHWRTLSERFAPYP-IKVALLNRFRTASERKSILDGLKQ 722

Query: 370  GELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPR 429
            G +D +VGTH LL     +  LGLLVVDEEQRFGV QKEKI   +  VDVLTLSATPIPR
Sbjct: 723  GTIDAVVGTHQLLSKGASFQELGLLVVDEEQRFGVNQKEKIKVLRKDVDVLTLSATPIPR 782

Query: 430  TLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKG 489
            TLY++L+G R+ SLITTPPP R PIKTHL+S   E + SAI+ ELDRGGQVFYV+PR++G
Sbjct: 783  TLYMSLSGVREMSLITTPPPLRRPIKTHLASLDPEAMRSAIRQELDRGGQVFYVVPRVEG 842

Query: 490  LEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNAN 549
            +EEV   L E  P +++ + HG+    +LE+ M  F  GE  +++ T IVESGLDI   N
Sbjct: 843  IEEVAAGLREMLPGLKLLVAHGQMAEGELENAMVAFNAGEADVMLCTTIVESGLDIPRVN 902

Query: 550  TIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQ 609
            TI+++D  +FGLAQLYQLRGRVGR+  +A+A+L YP    LSD A +RL A++E  +LG 
Sbjct: 903  TILIEDAHRFGLAQLYQLRGRVGRSGIQAHAWLFYPGNASLSDTARQRLRAIQEFAQLGS 962

Query: 610  GFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQV 669
            G+QLA RDM IRG G + G QQ+G +  +G DL+ EML ESL++++   + +V     QV
Sbjct: 963  GYQLAMRDMEIRGVGNLLGVQQSGQMETIGFDLYMEMLQESLAEIQGQDIPSV--EDTQV 1020

Query: 670  DININPHLPSEYINHLENPMEIINEAERVAEKDTW-SLMQFTENLRRQYGKEPRPMEVLL 728
            D+ +   +P+++I    +P E I      A+  T  +L++       +YG  P  +  LL
Sbjct: 1021 DLPVTAFVPADWIT---DPDEKIAAYRAAADCLTAEALVELAAGWADRYGALPAAVVSLL 1077

Query: 729  KKLYLRRMAADIGINRIYSSGKTVFMKANITKKVFKMMTDSMTSDIYRNSLVLEGDQIK 787
            + + L+ +A   G +RI      + ++  + +  F+++   +   ++   +   G+ I+
Sbjct: 1078 QLMELKLLAKRCGFSRIKPEKPNIVLETPMEEPAFRLLRQGLPQHLHGRLVYQAGNGIQ 1136


>K9UG52_9CHRO (tr|K9UG52) Transcription-repair coupling factor Mfd OS=Chamaesiphon
            minutus PCC 6605 GN=Cha6605_3074 PE=4 SV=1
          Length = 1137

 Score =  542 bits (1397), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 291/644 (45%), Positives = 417/644 (64%), Gaps = 21/644 (3%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S +VDP  LR GDYVVH+  G+G FI  K +  +      +Y+ I+YADG  K+P  Q  
Sbjct: 458  SKQVDPNKLRPGDYVVHRNHGLGRFI--KFESIQTDDTLRDYLTIQYADGSLKVPADQVG 515

Query: 191  KMLYRYCLPNENKKPKALSKLNDTS--VWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRP 248
             +L R+      +   A  +LN  S   WEK K K K +I+K+  DL++LY  R ++   
Sbjct: 516  -VLSRF-----RQAAGAKPELNRLSGQAWEKTKAKVKKSIKKLAFDLLKLYAERSQKEGF 569

Query: 249  PYP-KSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALR 307
             +P  +P   E    F Y+PTPDQ +A  DV++D+ E + PMDRL+CGDVGFGKTEVA+R
Sbjct: 570  AFPPDAPWQQELEDSFRYQPTPDQLKATQDVKRDM-ESDRPMDRLVCGDVGFGKTEVAIR 628

Query: 308  AI-RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLES 366
            AI + V +A KQ + LAPT +L +QH+  + ERFA YP I +GLL+RF+T  E+++ L+ 
Sbjct: 629  AIFKAVTTANKQVIFLAPTTILTQQHYHTLKERFAPYP-INIGLLNRFRTAEERKDILQR 687

Query: 367  IKSGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATP 426
            +K+GELDI++GTH LL   + + +LGLL +DEEQRFGV QKEKI T K+ +DVLTLSATP
Sbjct: 688  LKTGELDIVIGTHQLLSKELKFKDLGLLTIDEEQRFGVNQKEKIKTLKSQIDVLTLSATP 747

Query: 427  IPRTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPR 486
            IPRTLY++L+G R+ SLITTPPP R PI THLS +  + + +AI+ ELDRGGQ+FYV+P+
Sbjct: 748  IPRTLYMSLSGVREMSLITTPPPSRRPIATHLSPYKIDAIATAIRQELDRGGQIFYVVPK 807

Query: 487  IKGLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQ 546
            I+G+EE    + E  P   IAI HG+    +LE TM  F+ G+  +L+ T I+ESGLDI 
Sbjct: 808  IEGIEETAGKIREQIPSCRIAIAHGQMDEAELESTMLTFSNGDADLLVCTTIIESGLDIP 867

Query: 547  NANTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRE 606
              NTI+V+D  +FGLAQLYQLRGRVGRA  +A+A+L YP ++ LS+ A +RL A++E  +
Sbjct: 868  RVNTILVEDAHRFGLAQLYQLRGRVGRAGIQAHAWLFYPKESTLSETARQRLKAIQEFTQ 927

Query: 607  LGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHS 666
            LG G+QLA RDM IRG G + G +Q+G +  +G DL+ EML E++ ++    +  V    
Sbjct: 928  LGSGYQLATRDMEIRGVGNLLGAEQSGQMDVIGFDLYMEMLQEAIKEIRGQEIPQV--DD 985

Query: 667  VQVDININPHLPSEYINHLENPMEIINEAERVAEKDT-WSLMQFTENLRRQYGKEPRPME 725
             Q+D+ +   +P++YI  LE  M        VA  DT   L         +YG+ P+P +
Sbjct: 986  TQIDLKVTAMIPADYIADLEQKMSAYRA---VAAADTKQELTNIAAEWHDRYGEIPKPAQ 1042

Query: 726  VLLKKLYLRRMAADIGINRIYSSGKT-VFMKANITKKVFKMMTD 768
             L + + L+++A  +G +RI   GK  V ++  + +  + ++ +
Sbjct: 1043 QLFRIVELKQIAKQLGFSRIRPDGKQHVILETPMAEPAWNLLAE 1086


>Q05SQ5_9SYNE (tr|Q05SQ5) Transcriptional-repair coupling factor OS=Synechococcus
            sp. RS9916 GN=RS9916_30354 PE=4 SV=1
          Length = 1194

 Score =  542 bits (1396), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 291/654 (44%), Positives = 417/654 (63%), Gaps = 14/654 (2%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S  VDP  ++ GD+VVH+  GIG F   K++    S E  +Y+ ++YADG+ ++   Q  
Sbjct: 493  SRTVDPNKMQPGDFVVHRNHGIGRFQ--KLEKLAISGEVRDYLVVQYADGILRVAADQLG 550

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
              L RY   +++  P  LSK+   S W K K +   A++K+ +DL++LY  R +     +
Sbjct: 551  S-LGRYRANSDS--PPQLSKMGG-SAWVKAKERASKAVRKVALDLVKLYAERHQAPGFAF 606

Query: 251  P-KSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
            P   P   E    FPYEPTPDQ +A  +V++D+ E+  PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 607  PIDGPWQTELEDSFPYEPTPDQLKATAEVKRDM-EKSQPMDRLVCGDVGFGKTEVAIRAI 665

Query: 310  RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKS 369
               ++A KQ  +LAPT VLA+QH+  +SERFA YP IKV LL+RF+T  E++  LE +K 
Sbjct: 666  FKAITAGKQVAMLAPTTVLAQQHWRTLSERFAPYP-IKVALLNRFRTAGERKTILEGLKK 724

Query: 370  GELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPR 429
            G +D +VGTH LL     +  LGLLVVDEEQRFGV QKEKI   +  VDVLTLSATPIPR
Sbjct: 725  GTIDAVVGTHQLLSKSTAFDKLGLLVVDEEQRFGVNQKEKIKALRKDVDVLTLSATPIPR 784

Query: 430  TLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKG 489
            TLY++L+G R+ SLITTPPP R PIKTHL++  +E V SAI+ ELDRGGQVFYV+PR++G
Sbjct: 785  TLYMSLSGVREMSLITTPPPLRRPIKTHLAALDEEAVRSAIRQELDRGGQVFYVVPRVQG 844

Query: 490  LEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNAN 549
            +EEV   L E  P +++ + HG+    +LE  M  F  GE  +++ T IVESGLDI   N
Sbjct: 845  IEEVAGKLREMLPGLKLLVAHGQMAEGELESAMVAFNGGEADVMLCTTIVESGLDIPRVN 904

Query: 550  TIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQ 609
            TI+++D  +FGLAQLYQLRGRVGR+  +A+A+L YP    LSD A +RL A++E  +LG 
Sbjct: 905  TILIEDAHRFGLAQLYQLRGRVGRSGIQAHAWLFYPGDASLSDAARQRLRAIQEFAQLGS 964

Query: 610  GFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQV 669
            G+QLA RDM IRG G + G +Q+G +  +G DL+ EML ESL++++   + AV     QV
Sbjct: 965  GYQLAMRDMEIRGVGNLLGVEQSGQMEAIGFDLYMEMLQESLAEIQGQDIPAV--DDTQV 1022

Query: 670  DININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLLK 729
            D+ +   +P+++I   +  M     A      +  +L++   +   ++G  P P++ LL+
Sbjct: 1023 DLQVTAFIPADWITDADEKMGAYRSAGECQSAE--ALVELAADWADRFGALPGPVQSLLQ 1080

Query: 730  KLYLRRMAADIGINRIYSSGKTVFMKANITKKVFKMMTDSMTSDIYRNSLVLEG 783
             + L+ +A   G  RI      + ++  + +  F+++   +   ++   LV +G
Sbjct: 1081 LMELKLLAKRCGFARIRPEKPNIALETPMEEPAFRLLRQGLPQHLH-GRLVYQG 1133


>K9SS77_9SYNE (tr|K9SS77) Transcription-repair coupling factor Mfd OS=Synechococcus
            sp. PCC 7502 GN=Syn7502_00978 PE=4 SV=1
          Length = 1128

 Score =  542 bits (1396), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 290/638 (45%), Positives = 410/638 (64%), Gaps = 14/638 (2%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S KVD   L  GDYVVH+  GIG F+  +++    + E  EY+ I+Y DG+ ++   Q  
Sbjct: 455  SKKVDLDKLSAGDYVVHRHHGIGQFL--RLESLTINKETREYLVIQYEDGLLRVVADQVG 512

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
              L R+    + K    L+K+   + W     K + +I+K+ +DL+ELY  R +Q    +
Sbjct: 513  S-LSRFRSSGDTKP--TLNKMTGKA-WANTTNKVRKSIKKIAIDLLELYARRSQQVGYAF 568

Query: 251  PKS-PAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
            P   P   E    FPY+PTPDQ +A  DV++D+ E + PMDRL+CGDVGFGKTEVA+RA+
Sbjct: 569  PPDMPWQQEMEDSFPYQPTPDQLKATQDVKQDM-ESDRPMDRLVCGDVGFGKTEVAIRAL 627

Query: 310  RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKS 369
               ++A KQ+ +LAPT +LA+QH+  + ERFA YP I + LL+RF++  E++E ++ + +
Sbjct: 628  FKALTAGKQSALLAPTTILAQQHYHTMQERFAPYP-INIALLNRFKSTMERKEIIQKLAT 686

Query: 370  GELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPR 429
            GELD++VGTH LL   + + NLGLLV+DEEQRFGV QKEKI +FKT VDVLTLSATPIPR
Sbjct: 687  GELDLVVGTHQLLSKEINFKNLGLLVIDEEQRFGVAQKEKIKSFKTEVDVLTLSATPIPR 746

Query: 430  TLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKG 489
            TLY++L+G R+ SLITTPPP R  IKTHLS +  E + SAI+ ELDRGGQVFYV+PRI+G
Sbjct: 747  TLYMSLSGVREMSLITTPPPSRRSIKTHLSRYDPEAIRSAIRQELDRGGQVFYVVPRIEG 806

Query: 490  LEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNAN 549
            +EE    L E  P   +AI HG+    +LE TM  F  GE  IL+ T I+ESGLDI   N
Sbjct: 807  IEETSTKLREMIPSARLAIAHGQMPEGELETTMLTFNSGEADILVCTTIIESGLDIPRVN 866

Query: 550  TIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQ 609
            TII++D Q+ GLAQLYQLRGRVGR+  +A+A+L Y  K  LS+ A +RL A++E   LG 
Sbjct: 867  TIIIEDAQKLGLAQLYQLRGRVGRSGVQAHAWLFYQAKGELSEPARQRLRAIQEFTHLGS 926

Query: 610  GFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQV 669
            G+QLA RDM IRG G++ G +Q+G +  +G DL+ EML E++++++   +  V     Q+
Sbjct: 927  GYQLAMRDMEIRGVGSLLGAEQSGQMEAIGFDLYMEMLQEAIAEIKGSEIPQV--DDTQI 984

Query: 670  DININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLLK 729
            D+ +   +P+ YI   +  M        V  +    L Q  E  R +YG  P   + L+K
Sbjct: 985  DLPLTAFIPNNYIPDPDQKMAAYRALAAVNSRR--ELNQILEEWRDRYGTVPAATQQLVK 1042

Query: 730  KLYLRRMAADIGINRIYSSGK-TVFMKANITKKVFKMM 766
             + L+++A  IG +RI   GK  + ++  + +  +K +
Sbjct: 1043 VMELKQVAKKIGFSRIKPEGKQNIILETKMEEPAWKTL 1080


>L8N0S9_9CYAN (tr|L8N0S9) Transcription-repair coupling factor OS=Pseudanabaena
            biceps PCC 7429 GN=Pse7429DRAFT_1557 PE=4 SV=1
          Length = 1136

 Score =  541 bits (1395), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 305/646 (47%), Positives = 413/646 (63%), Gaps = 14/646 (2%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S +VD   L  GDYVVHK  G+G F+ ++     N  E  EY+ ++Y DG+ ++ V Q S
Sbjct: 461  SKQVDLNKLAPGDYVVHKNHGVGQFLKLEKLTVNN--ETREYLVLKYDDGLLRVVVDQMS 518

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
             +L RY   NE+K    L K+   + W     K K AI+K+  DL+ELY  R +Q    +
Sbjct: 519  -ILSRYRGMNESKP--ELHKMTGKA-WTNTTNKAKKAIKKIAFDLLELYAKRSQQVGYAF 574

Query: 251  P-KSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
            P  +P   E    FPY+ TPDQ +A  DV++D+ E   PMDRL+CGDVGFGKTEVA+R I
Sbjct: 575  PPDNPWQQEMEDSFPYQATPDQLKATQDVKQDM-ESSRPMDRLVCGDVGFGKTEVAIRTI 633

Query: 310  RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKS 369
               V+  KQA +L PT +LA+QH+  + ER+A YP I + LL+RF+TK EK+E    +K+
Sbjct: 634  FKAVTTGKQAALLVPTTILAQQHYHSLQERYAAYP-INIALLNRFRTKVEKKEICRKLKT 692

Query: 370  GELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPR 429
            GELDI+VGTH LL   V + +LGLLV+DEEQRFGV QKEKI T KT VDVLTLSATPIPR
Sbjct: 693  GELDIVVGTHQLLSKDVEFKDLGLLVIDEEQRFGVAQKEKIKTMKTEVDVLTLSATPIPR 752

Query: 430  TLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKG 489
            TLY+A++G R+ SLITTPPP R  I THLS ++ E V +AI+ ELDRGGQ+FYV+ RI  
Sbjct: 753  TLYMAMSGVREMSLITTPPPSRRSIMTHLSRYNPELVRAAIRQELDRGGQIFYVVSRIDD 812

Query: 490  LEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNAN 549
            +EEV   + E  P V +AI HG+    +LE TM  F+ GE  ++I T I+ESGLDI   N
Sbjct: 813  IEEVSARVHEMLPSVRMAIAHGQMPESELESTMLNFSSGESDMMICTTIIESGLDIPRVN 872

Query: 550  TIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQ 609
            TII++D Q+FGLAQLYQLRGRVGRA  +A+A+L Y +K  L+D A +RL A++E   LG 
Sbjct: 873  TIIIEDAQRFGLAQLYQLRGRVGRAGIQAHAWLFYQEKGELTDIARKRLKAIQEFTHLGS 932

Query: 610  GFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQV 669
            G+QLA RDM IRG G + G +Q+G +  +G DL+ EML E+++++    +  V     QV
Sbjct: 933  GYQLAMRDMEIRGVGNLLGAEQSGQINTIGFDLYMEMLQEAIAEIRGSEIPEV--EDTQV 990

Query: 670  DININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLLK 729
            D+ I   +P+EYI   +  M        V+ +    LMQ  E  R  YGK P P   L+K
Sbjct: 991  DLPITAFIPTEYIPDGDRKMSAYRTVASVSSRR--ELMQIIEEWRDCYGKVPVPAMQLIK 1048

Query: 730  KLYLRRMAADIGINRIYSSGKT-VFMKANITKKVFKMMTDSMTSDI 774
             + L+ +A  IG  RI   GK  V +++ + +  +K++   + S +
Sbjct: 1049 VMELKLLAKRIGFFRIKPEGKQHVVLESKMEEPAWKLLHQHLPSHL 1094


>D0CIV8_9SYNE (tr|D0CIV8) Transcription-repair coupling factor OS=Synechococcus sp.
            WH 8109 GN=mfd PE=4 SV=1
          Length = 1203

 Score =  541 bits (1395), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 288/658 (43%), Positives = 417/658 (63%), Gaps = 13/658 (1%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S  VDP  +R GD+VVH+  GIG F    M+    S +  +Y+ ++YADG+ ++   Q  
Sbjct: 502  SRTVDPNKMRPGDFVVHRNHGIGRFKA--MEKLAMSGDIRDYLVVQYADGILRVAADQLG 559

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
              L RY   +E   P  L+++  T+ W K K + K A++K+ +DL++LY  R +     +
Sbjct: 560  S-LGRYRATSET--PPQLNRMGGTA-WNKAKERAKKAVRKVALDLVKLYAERQQAAGFAF 615

Query: 251  PK-SPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
            P   P   E    FPY+PTPDQ +A  DV++D+ ER+ PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 616  PTDGPWQVEMEESFPYDPTPDQLKATADVKRDM-ERQEPMDRLVCGDVGFGKTEVAIRAI 674

Query: 310  RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKS 369
               ++A KQ  +LAPT VLA+QH+  +SERFA YP IKV LL+RF+T +E++  L+ +K 
Sbjct: 675  FKAITAGKQVAMLAPTTVLAQQHWRTLSERFAPYP-IKVALLNRFRTASERKSILDGLKQ 733

Query: 370  GELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPR 429
            G +D +VGTH LL     +  LGLLVVDEEQRFGV QKEKI   +  VDVLTLSATPIPR
Sbjct: 734  GTIDAVVGTHQLLSKGASFQELGLLVVDEEQRFGVNQKEKIKVLRKDVDVLTLSATPIPR 793

Query: 430  TLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKG 489
            TLY++L+G R+ SLITTPPP R PIKTHL+S   E V SAI+ ELDRGGQVFYV+PR++G
Sbjct: 794  TLYMSLSGVREMSLITTPPPLRRPIKTHLASLDPEAVRSAIRQELDRGGQVFYVVPRVEG 853

Query: 490  LEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNAN 549
            ++EV   L    P +++ + HG+    +LE+ M  F  GE  +++ T IVESGLDI   N
Sbjct: 854  IDEVAAGLRAMLPGLKLLVAHGQMAEGELENAMVAFNAGEADVMLCTTIVESGLDIPRVN 913

Query: 550  TIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQ 609
            TI+++D  +FGLAQLYQLRGRVGR+  +A+A+L YP    LSD A +RL A++E  +LG 
Sbjct: 914  TILIEDAHRFGLAQLYQLRGRVGRSGIQAHAWLFYPGNASLSDTARQRLRAIQEFAQLGS 973

Query: 610  GFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQV 669
            G+QLA RDM IRG G + G QQ+G +  +G DL+ EML ESL++++   + +V     QV
Sbjct: 974  GYQLAMRDMEIRGVGNLLGVQQSGQMETIGFDLYMEMLQESLAEIQGQDIPSV--EDTQV 1031

Query: 670  DININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLLK 729
            D+ +   +P+++I   +  +     A      +  +L++   +   +YG  P  +  LL+
Sbjct: 1032 DLPVTAFVPADWITDPDEKIAAYRAASDCLSAE--ALVELAASWADRYGALPAAVVSLLQ 1089

Query: 730  KLYLRRMAADIGINRIYSSGKTVFMKANITKKVFKMMTDSMTSDIYRNSLVLEGDQIK 787
             + L+ +A   G +RI      + ++  + +  F+++   +   ++   +   G  I+
Sbjct: 1090 LMELKLLAKQCGFSRIKPEKPNILLETPMEEPAFRLLRQGLPKHLHGRLIYQAGSGIQ 1147


>A2C9M3_PROM3 (tr|A2C9M3) Transcriptional-repair coupling factor OS=Prochlorococcus
            marinus (strain MIT 9303) GN=mfd PE=4 SV=1
          Length = 1193

 Score =  541 bits (1394), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 289/658 (43%), Positives = 424/658 (64%), Gaps = 17/658 (2%)

Query: 134  VDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSSKML 193
            VDP  + +GD+VVH+  GIG F+  K++    S E  +Y+ I+Y DG   +   Q    L
Sbjct: 495  VDPNKMCSGDFVVHRNHGIGRFL--KLEKLAISGEVRDYLVIQYLDGTLSVAADQLGS-L 551

Query: 194  YRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY--- 250
             RY   +E+  P  L+++  T+ W+K K + +  ++K+ +DL++LY  RL+   P Y   
Sbjct: 552  GRYRSTSES--PPKLNRMGGTA-WQKIKERTRKLVRKVAMDLVKLYAERLQA--PGYAFP 606

Query: 251  PKSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAIR 310
            P  P   E    FPYEPTPDQ +A +DV++D+ E   PMDRL+CGDVGFGKTEVA+RAI 
Sbjct: 607  PDGPWQIELEESFPYEPTPDQVKAVVDVKRDM-EAAQPMDRLVCGDVGFGKTEVAIRAIF 665

Query: 311  CVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKSG 370
              +++ +Q  +LAPT VLA+QH+  +S+RFA YP IKV LL+RF+T +E++  L  +K G
Sbjct: 666  KAITSGRQIAMLAPTTVLAQQHWRTLSDRFAPYP-IKVALLNRFRTSSERKSILNGLKEG 724

Query: 371  ELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPRT 430
             +D +VGTH LL     +  LGLLVVDEEQRFGV QKEKI   +  VDVLTLSATPIPRT
Sbjct: 725  TIDAVVGTHQLLSKNTTFQKLGLLVVDEEQRFGVNQKEKIKVLRKDVDVLTLSATPIPRT 784

Query: 431  LYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKGL 490
            LY++L+G R+ SLITTPPP R PIKTHL++F +E V S+I+ ELDRGGQVFYV+PR++G+
Sbjct: 785  LYMSLSGVREMSLITTPPPLRRPIKTHLAAFDEEAVRSSIRQELDRGGQVFYVVPRVEGI 844

Query: 491  EEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNANT 550
            E+V   L++  PD+++ + HG+    +LE +M  F  GE  +++ T IVESGLDI   NT
Sbjct: 845  EDVASQLQQMLPDLKLLVAHGQMAEGELESSMVAFNAGEADLMLCTTIVESGLDIPRVNT 904

Query: 551  IIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQG 610
            I+++D  +FGLAQLYQLRGRVGR+  +A+A+L YP    LSD A +RL A++E  +LG G
Sbjct: 905  ILIEDAHKFGLAQLYQLRGRVGRSGVQAHAWLFYPGDASLSDAARQRLRAIQEFAQLGSG 964

Query: 611  FQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQVD 670
            +QLA RDM IRG G + G +Q+G +  +G DL+ EML ESL++++   + +V     Q+D
Sbjct: 965  YQLAMRDMEIRGVGNLLGVEQSGQMETIGFDLYMEMLQESLAEIQGQGIPSV--DDTQID 1022

Query: 671  ININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLLKK 730
            + +   +P+E+I  ++   +I             SL++   +   +YG  P P++ LL+ 
Sbjct: 1023 LPVTAFVPAEWI--VDGDEKIAAYRAAANCASHESLIELAASWTDRYGAIPGPVQSLLQL 1080

Query: 731  LYLRRMAADIGINRIYSSGKTVFMKANITKKVFKMMTDSMTSDIYRNSLVLEGDQIKA 788
            + L+ +A   GI+RI      + M+  + +  F+++   +   ++   +   G   KA
Sbjct: 1081 MELKLLARRCGISRIKPEKPNIAMETPMEEPAFRLLRQGLPQHLHGRLIYQTGSGNKA 1138


>Q46KW7_PROMT (tr|Q46KW7) Transcription-repair coupling factor OS=Prochlorococcus
            marinus (strain NATL2A) GN=PMN2A_0369 PE=4 SV=1
          Length = 1167

 Score =  541 bits (1393), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 298/659 (45%), Positives = 432/659 (65%), Gaps = 19/659 (2%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGI-KMDVPKNSAEPTEYVFIEYADGMAKLPVKQS 189
            S K+DP  ++ GDYVVH+  GIG+F  I K+++   + E  +Y+ I+Y DG   +   Q 
Sbjct: 490  SKKIDPNKMKPGDYVVHRNHGIGLFQKIEKLNI---NGESRDYLVIKYMDGKLSVAADQL 546

Query: 190  SKMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPP 249
               L RY   + N K   +SKL   + W K K K K +++K+ +DL++LY  R K++   
Sbjct: 547  GS-LGRY--RSSNAKTPTISKLGGAN-WNKIKEKAKKSVKKVAIDLIKLYAERSKEKGYK 602

Query: 250  YP-KSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRA 308
            +P   P   E    FPY  TPDQ  A   V+ D+ E E PMDRL+CGDVGFGKTEVA+RA
Sbjct: 603  FPCDGPWQNELEDSFPYALTPDQATATSQVKSDM-ESEKPMDRLVCGDVGFGKTEVAIRA 661

Query: 309  IRCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIK 368
            I   +++ KQ  +LAPT VL++QH+  IS+RFA YP IKV LL+RF+T +EK+  +  +K
Sbjct: 662  IFKAITSGKQIALLAPTTVLSQQHWRTISDRFAPYP-IKVSLLNRFKTNSEKKHIVSGLK 720

Query: 369  SGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIP 428
             G++D +VGTH LL  ++VY +LGLLV+DEEQRFGV QKEKI   K SVDVLTLSATPIP
Sbjct: 721  DGQIDAVVGTHQLLNKKLVYKDLGLLVIDEEQRFGVNQKEKIKELKKSVDVLTLSATPIP 780

Query: 429  RTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIK 488
            RTLY++L+G R+ SLITTPPP R PIKTHL+    E + SAI  E+DRGGQ+FY++PRIK
Sbjct: 781  RTLYMSLSGVREMSLITTPPPLRRPIKTHLAPLDNEIIRSAISQEIDRGGQIFYIVPRIK 840

Query: 489  GLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNA 548
            G+E+V E L+   P+V++ I HG+     LE+ M  F  GE  IL+ T IVESGLDI   
Sbjct: 841  GIEDVAEKLKIMIPNVKLLIAHGQMEEGALENAMLAFNAGEADILLCTTIVESGLDIPRV 900

Query: 549  NTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELG 608
            NTI+++D  +FGL+QLYQLRGRVGR+  +A+A+L YP    L++ + +RL A++E  +LG
Sbjct: 901  NTILIEDSHKFGLSQLYQLRGRVGRSGVQAHAWLFYPSDEKLNETSRQRLKAIKEFSDLG 960

Query: 609  QGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQ 668
             G+QLA RDM IRG G I G +Q+G +  +G DL+ E+L E++++++   + +V     Q
Sbjct: 961  SGYQLAMRDMEIRGVGNILGIEQSGQMETIGFDLYMELLQETIAEIQGQDIPSV--DDTQ 1018

Query: 669  VDININPHLPSEYINHLENPMEIINEAERVAEK--DTWSLMQFTENLRRQYGKEPRPMEV 726
            +D+ +   +P ++I    +P E IN A R+A +  +  SL+QF  NL  +YG  P+ +E 
Sbjct: 1019 IDLPVTAFIPGDWIT---DPDEKIN-AYRLATQCENNDSLVQFASNLVDRYGTLPKAVES 1074

Query: 727  LLKKLYLRRMAADIGINRIYSSGKTVFMKANITKKVFKMMTDSMTSDIYRNSLVLEGDQ 785
            L++ + L+ +A   G +RI  S   V ++  + +  FK++   + + ++   +  +GD+
Sbjct: 1075 LIEVMKLKIIAKKCGFSRIKLSKPNVELETMMDEPAFKLLRKGLANHLHGRFIYKKGDK 1133


>D8G7K2_9CYAN (tr|D8G7K2) Transcription-repair-coupling factor OS=Oscillatoria sp.
            PCC 6506 GN=mfd PE=4 SV=1
          Length = 1226

 Score =  541 bits (1393), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 286/622 (45%), Positives = 410/622 (65%), Gaps = 15/622 (2%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S +VDP  L   DYVVH++ GIG F+  +++    + E  EY+ I+Y DG  ++   Q  
Sbjct: 549  SKQVDPNKLSANDYVVHRQHGIGRFL--RLESLTINQETREYLVIQYGDGTLRIAADQLG 606

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
              L R+     ++ P+ L+KL+    WEK K K + +I+K+ VDL+ LY  R +Q    +
Sbjct: 607  A-LSRFRTVG-DRAPE-LNKLS-AQTWEKTKAKVRKSIKKLAVDLLNLYAKRAQQVGFAF 662

Query: 251  PKS-PAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
            P   P   E    FPY+PTPDQ +A  DV++D+ E + PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 663  PPDMPWQQELEDSFPYQPTPDQLKATQDVKRDM-EGDRPMDRLVCGDVGFGKTEVAIRAI 721

Query: 310  RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKS 369
               ++A KQ  +LAPT +L +QH+  + ERFA YP I+VGLL+RF+T+ E+ E    + S
Sbjct: 722  FKAITAGKQVAMLAPTTILTQQHYHTLKERFAPYP-IEVGLLNRFRTETERRELQRRLAS 780

Query: 370  GELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPR 429
            GELD++VGT S+L   V + +LGL+VVDEEQRFGVKQKE I   KT VDVLTL+ATPIPR
Sbjct: 781  GELDVVVGTQSILSKGVKFKDLGLMVVDEEQRFGVKQKEAIKALKTMVDVLTLTATPIPR 840

Query: 430  TLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKG 489
            TLY++L+G R+ S+I TPPP R PI+THL+++  E V +AI+ ELDRGGQVFYV+PRI+G
Sbjct: 841  TLYMSLSGIREMSIIATPPPTRRPIQTHLAAYDPEVVRTAIRQELDRGGQVFYVVPRIEG 900

Query: 490  LEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNAN 549
            ++++   L    P  +IAI HG+  + +LE  M  F+  +  IL+ T I+ESGLDI   N
Sbjct: 901  IDDLAAQLGVMVPGAKIAIAHGQMDASELEAIMLAFSAADFDILVCTTIIESGLDIPRVN 960

Query: 550  TIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQ 609
            TI+++D Q+FGLAQLYQLRGRVGRA  +A+A+L YP++N L+D+A +RL A++E  +LG 
Sbjct: 961  TILIEDAQRFGLAQLYQLRGRVGRAGVQAHAWLFYPNQNRLTDEARQRLRAIQEFAQLGS 1020

Query: 610  GFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQV 669
            G+QLA RD+ IRG G I G +Q+G +  +G DL+ +ML E++ +++   +  V     Q+
Sbjct: 1021 GYQLAIRDLEIRGAGDILGAEQSGQMDAIGFDLYAQMLEEAIREIKGQEIPQV--EDTQI 1078

Query: 670  DININPHLPSEYINHLENPMEIINEAERVAEKDTW-SLMQFTENLRRQYGKEPRPMEVLL 728
            D+ +   +P++YI  L+  M        VA   T   L Q       +YG  P+P + L+
Sbjct: 1079 DLTLTAFIPADYITDLDQKMSAYRS---VASASTLEELSQIEAAWCDRYGPIPKPAQQLI 1135

Query: 729  KKLYLRRMAADIGINRIYSSGK 750
            + + L+++A  IG +RI    K
Sbjct: 1136 RVVQLKQLAMKIGFSRIKPENK 1157


>K9Z1Q9_CYAAP (tr|K9Z1Q9) Transcription-repair coupling factor OS=Cyanobacterium
            aponinum (strain PCC 10605) GN=Cyan10605_0370 PE=4 SV=1
          Length = 1197

 Score =  541 bits (1393), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 291/622 (46%), Positives = 416/622 (66%), Gaps = 18/622 (2%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S +VD   LR  D++VHK  GIG F+ +++       E  EY+ I+YADG+ ++P   S 
Sbjct: 524  SKQVDLDKLRPKDFIVHKYHGIGQFLELEV------YEGREYLVIKYADGLLRVPAD-SL 576

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
            +++ RY   +   KP  L+K++    W+  K K K +I+K+ VDL++LY  R + +   Y
Sbjct: 577  ELVSRYR--HTETKPPKLNKMSGKE-WQNVKNKVKKSIKKLAVDLVKLYATRNELKGYAY 633

Query: 251  P-KSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
            P  SP   E    FPY+ TPDQ +A IDV++DL E + PMDRL+CGDVGFGKTEVA+R+I
Sbjct: 634  PPDSPWQTELEDSFPYQATPDQLKAIIDVKRDL-ESDRPMDRLVCGDVGFGKTEVAIRSI 692

Query: 310  -RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIK 368
             + V S  KQ + LAPT +L++QH+  + ERFA YP I +GLL+RF+T +E++E ++ + 
Sbjct: 693  FKVVTSGNKQVVFLAPTTILSQQHYHTLVERFAPYP-INIGLLNRFRTASERKEIIQKLA 751

Query: 369  SGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIP 428
            +GELD++VGT  LL N++ Y +LGLLVVDEEQRFGV QKEKI   KTS+DVLTLSATPIP
Sbjct: 752  TGELDVVVGTQLLLSNKIKYKDLGLLVVDEEQRFGVNQKEKIKALKTSIDVLTLSATPIP 811

Query: 429  RTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIK 488
            RTLY++++G R+ SLITTPPP R PIKTH+  F++E + +AI+ ELDRGGQ+FYV+PRI+
Sbjct: 812  RTLYMSISGVREMSLITTPPPSRRPIKTHIMPFNQEVIRTAIRNELDRGGQIFYVVPRIE 871

Query: 489  GLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNA 548
            G+E+++  LE+  P + IAI HG+    QLE TM  F+ GE  +L+ T IVESGLDI   
Sbjct: 872  GMEKIITMLEQMIPSLRIAIAHGQLDEGQLESTMLGFSNGEADLLLCTTIVESGLDIPRV 931

Query: 549  NTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELG 608
            NTIIV+   +FGL+QLYQLRGRVGR+  +A+A+LLYP+  +LSD A +RL AL+E  +LG
Sbjct: 932  NTIIVESAHKFGLSQLYQLRGRVGRSGIQAHAWLLYPNDEILSDVAKKRLRALQEFSQLG 991

Query: 609  QGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQ 668
             G+ LA RDM IRG G + G +Q+G +  +G +++ EML E++++++   +  V     Q
Sbjct: 992  SGYHLAMRDMEIRGVGNLLGAEQSGQMEAIGFEMYTEMLKEAINEIQGQEIPQV--EDTQ 1049

Query: 669  VDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLL 728
            +D+ +   +P+ YI  +E  M+       V  +    + Q   + + +YG+ P     LL
Sbjct: 1050 IDLKLTALIPNRYIADMEQKMDAYRAVATVTSQR--EIKQIESDWQDRYGEIPESARELL 1107

Query: 729  KKLYLRRMAADIGINRIYSSGK 750
                L+  A  IG +RI   GK
Sbjct: 1108 LVAELKLKAKSIGFSRIKPEGK 1129


>B5II16_9CHRO (tr|B5II16) Transcription-repair coupling factor OS=Cyanobium sp. PCC
            7001 GN=mfd PE=4 SV=1
          Length = 1189

 Score =  540 bits (1392), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 283/646 (43%), Positives = 415/646 (64%), Gaps = 13/646 (2%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S  VDP  ++ GD+VVH+  GIG F+  +++      E  +Y+ ++YADG+ ++   Q  
Sbjct: 488  SRTVDPNKMQPGDFVVHRNHGIGRFL--RLEKLAIGGEERDYLVVQYADGLLRVAADQLG 545

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
              L RY   +++  P  L+++  T+ W K K + + A++++ +DL++LY  R K    P+
Sbjct: 546  S-LGRYRATSDS--PPDLNRMGGTA-WSKAKERARKAVRRVALDLVKLYAERHKTPGFPF 601

Query: 251  PKSPAMA-EFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
            P       E    FPYEPTPDQ +A  DV++D+ E+  PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 602  PPDGPWQNELEDSFPYEPTPDQVKAIADVKRDM-EQAQPMDRLVCGDVGFGKTEVAIRAI 660

Query: 310  RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKS 369
               V+A +Q  +LAPT VLA+QH+  +SERFA YP +KV LL+RF+T AE++   E + +
Sbjct: 661  FKAVTAGRQVAMLAPTTVLAQQHWRSLSERFAPYP-VKVSLLNRFRTAAERKLIQEGLAA 719

Query: 370  GELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPR 429
            G +D++VGTH LLG    +  LGLLVVDEEQRFGV QKEKI   +  VDVLTLSATPIPR
Sbjct: 720  GTVDVVVGTHQLLGKGTRFKQLGLLVVDEEQRFGVNQKEKIKALRKDVDVLTLSATPIPR 779

Query: 430  TLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKG 489
            TLY++L+G R+ SLITTPPP R PIKTHL++  +E V SAI+ ELDRGGQ+FYV+PR++G
Sbjct: 780  TLYMSLSGVREMSLITTPPPLRRPIKTHLAALDEEAVRSAIRQELDRGGQIFYVVPRVEG 839

Query: 490  LEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNAN 549
            +EEV E L +  P +++ + HG+    +LE  M  F  GE  +++ T IVESGLDI   N
Sbjct: 840  IEEVAERLRQMLPGLQLLVAHGQMAEGELESAMVAFNAGEADLMLCTTIVESGLDIPRVN 899

Query: 550  TIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQ 609
            TI+++D  +FGLAQLYQLRGRVGR+  +A+A+L YP    LS+ A +RL A++E  +LG 
Sbjct: 900  TILIEDAHRFGLAQLYQLRGRVGRSGIQAHAWLFYPGDASLSEAARQRLRAIQEFAQLGS 959

Query: 610  GFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQV 669
            G+QLA RDM IRG G + G +Q+G +  +G DL+ EML ESL++++   +  V     Q+
Sbjct: 960  GYQLAMRDMEIRGVGNLLGVEQSGQMEAIGFDLYMEMLQESLAEIQGQDIPKV--DDTQI 1017

Query: 670  DININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLLK 729
            D+ I   +P ++I   +  M     A     K+  +L++       +YG  P P+  LL+
Sbjct: 1018 DLPITAFIPGDWITENDEKMAAYRAAADCTSKE--ALVELAAAWVDRYGAIPAPVTALLQ 1075

Query: 730  KLYLRRMAADIGINRIYSSGKTVFMKANITKKVFKMMTDSMTSDIY 775
             + L+ +A   G +RI      + +   + +  F+++   +   ++
Sbjct: 1076 LMELKLVARRCGFSRIKPEKPNIALDTPMEEPAFRLLRQGLPQHLH 1121


>Q114Y2_TRIEI (tr|Q114Y2) Transcription-repair coupling factor OS=Trichodesmium
            erythraeum (strain IMS101) GN=Tery_1671 PE=4 SV=1
          Length = 1180

 Score =  540 bits (1392), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 295/626 (47%), Positives = 412/626 (65%), Gaps = 19/626 (3%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S +V+P  L+ GD+VVH++ GIG F+ ++     N  E  +Y+ I+YADG+ ++   Q S
Sbjct: 491  SKQVNPNKLQPGDHVVHRQHGIGKFVKLESLTLNN--ETRDYLTIQYADGLLRVAADQLS 548

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
             +        ++KKP+ L+KL   + WE  K K + +I+K+ VDL++LY  R +Q    +
Sbjct: 549  SL--SRLRSTDHKKPQ-LNKLTGKT-WESTKNKVRKSIKKLAVDLLKLYAQRAQQTGYSF 604

Query: 251  P-KSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
            P  +P   E    FPY+PTPDQ +A  DV++D+ E E  MDRL+CGDVGFGKTEVA+RAI
Sbjct: 605  PPDTPWQEEMEDSFPYQPTPDQLKATQDVKRDM-ESERAMDRLVCGDVGFGKTEVAIRAI 663

Query: 310  RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKS 369
               V A+KQ   LAPT VL +QH+  + ERFA YP I++GLL+RF+T  EK+E    + +
Sbjct: 664  FKAVIAEKQVAFLAPTTVLTQQHYHTLKERFAPYP-IEIGLLNRFRTPNEKKEIQHRLAT 722

Query: 370  GELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPR 429
            GELDIIVGTHS+L   + +  LGLLVVDEEQRFGV QKEKI   K  VDVLTL+ATPIPR
Sbjct: 723  GELDIIVGTHSILSKTIQFRELGLLVVDEEQRFGVNQKEKIKALKAEVDVLTLTATPIPR 782

Query: 430  TLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKG 489
            TLY+AL+G R+ S+ITTPPP R PIKTHL+ +  E   +AI+ EL+RGGQVFYV+PRI+G
Sbjct: 783  TLYMALSGIREMSVITTPPPLRRPIKTHLAPYDLETARTAIRQELNRGGQVFYVVPRIEG 842

Query: 490  LEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNAN 549
            +EE+   L E  P   I IGHGK  + +LE  M  F+ GE  IL+ T I+ESGLDI   N
Sbjct: 843  IEELAGKLREMIPGARINIGHGKMDAAELESIMLTFSAGEADILVCTTIIESGLDIPRVN 902

Query: 550  TIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKN----LLSDQALERLSALEECR 605
            TI+++D Q+FGL+QLYQLRGRVGRA  +A+A+L YP  +     L+D A +RL A++E  
Sbjct: 903  TILIEDAQKFGLSQLYQLRGRVGRAGVQAHAWLFYPTTSSGGIALTDDAQKRLRAIQEFT 962

Query: 606  ELGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYH 665
            +LG G+ LA RD+ IRG G I G +Q+G V  +G DL+ EML E++ +++   +  V   
Sbjct: 963  QLGSGYHLAIRDLEIRGAGDILGAEQSGQVNAIGFDLYTEMLEEAIREIKGQEIPQV--D 1020

Query: 666  SVQVDININPHLPSEYINHLENPMEIINEAERVAEKDTW-SLMQFTENLRRQYGKEPRPM 724
              ++D+++   +P++YI  L+   + I+    VA  +T   L Q   +   +YG  P+  
Sbjct: 1021 DTKIDLSLTAFIPADYILDLD---QKISAYRSVAAANTREELSQIEVDWSDRYGAIPKAG 1077

Query: 725  EVLLKKLYLRRMAADIGINRIYSSGK 750
              LL+ + L+++A  IG +RI   GK
Sbjct: 1078 LQLLRMMELKQVAKKIGFSRIKVEGK 1103


>D4THN2_9NOST (tr|D4THN2) Transcription-repair coupling factor
            OS=Cylindrospermopsis raciborskii CS-505 GN=CRC_01822
            PE=4 SV=1
          Length = 1171

 Score =  539 bits (1388), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 295/661 (44%), Positives = 418/661 (63%), Gaps = 17/661 (2%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S +VDP  LR GD+VVH+  GIG F+  K++    + E  +Y+ I+YADG+ ++   Q  
Sbjct: 500  SKQVDPNKLRAGDFVVHRSHGIGKFV--KLESLTINDETRDYLVIQYADGVLRVAADQVG 557

Query: 191  KM-LYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPP 249
             +  +R  L     +P  L K+  +  W+  K+K K AI+K+ VDL++LY  R +Q    
Sbjct: 558  SLSRFRTNL----DRPPQLHKMT-SKAWDNTKSKVKKAIKKLAVDLLQLYAARSQQEGFS 612

Query: 250  YPKS-PAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRA 308
            YP+  P   E    FPY+PT DQ +A  DV++D+ E   PMDRL+CGDVGFGKTEVA+RA
Sbjct: 613  YPQDMPWQEEMEDSFPYQPTTDQLKAVQDVKRDM-ESPRPMDRLVCGDVGFGKTEVAIRA 671

Query: 309  IRCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIK 368
            I   V+A KQ  +LAPT +L +QH+  I ERFA YP I VGLL+RF++  EK    + + 
Sbjct: 672  IFKAVTAGKQVALLAPTTILTQQHYHTIKERFAPYP-IHVGLLNRFRSHEEKRNIQKRLL 730

Query: 369  SGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIP 428
            +GELDI+VGTH LLG  V + +LGLLV+DEEQRFGV QKEKI T KT +DVLTLSATPIP
Sbjct: 731  TGELDIVVGTHQLLGKGVQFKDLGLLVIDEEQRFGVNQKEKIKTLKTHLDVLTLSATPIP 790

Query: 429  RTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIK 488
            RTLY++L+G R+ SLITTPPP R PI+THL+  + + V SAI+ ELDRGGQVFYV+PR++
Sbjct: 791  RTLYMSLSGIREMSLITTPPPTRRPIQTHLAPLNPQIVSSAIRQELDRGGQVFYVVPRVE 850

Query: 489  GLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNA 548
            G+EE    L E  P     I HG+    QLE TM  F+  E  IL+ T I+ESGLDI   
Sbjct: 851  GIEETTTRLREMIPSGRFVIAHGQMDESQLESTMLTFSNHEADILVCTTIIESGLDIPRV 910

Query: 549  NTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELG 608
            NTI+++D  +FGL+QLYQLRGRVGRA  +A+A+L YP +  LSD A +RL A++E  +LG
Sbjct: 911  NTILIEDAHRFGLSQLYQLRGRVGRAGIQAHAWLFYPKQRELSDAARQRLRAIQEFTQLG 970

Query: 609  QGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQ 668
             G+QLA RDM IRG G + G +Q+G +  +G DL+ EML E++ ++    +  V     Q
Sbjct: 971  SGYQLAMRDMEIRGVGNLLGAEQSGQMDAIGFDLYMEMLEEAIREIRGQEIPKV--DDTQ 1028

Query: 669  VDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLL 728
            +D+N+   +P+ YI  ++  M           K+   L         +YG  P P   +L
Sbjct: 1029 IDLNLTAFIPATYITDIDQKMSAYRAVATAKSKE--ELRAIAAEWNDRYGIVPPPANQML 1086

Query: 729  KKLYLRRMAADIGINRIYSSGKT-VFMKANITKKVFKMMTDSMTSDIYRNSLVLEGDQIK 787
            + + L+++A ++G +RI    K  + ++  + +  + ++   +T ++ +N  V    ++ 
Sbjct: 1087 RVMELKQLAKNLGFSRIKPENKQHIVLETPMEEPAWNLLAQRLTENM-KNRFVYSPGKVT 1145

Query: 788  A 788
            A
Sbjct: 1146 A 1146


>A5GLU1_SYNPW (tr|A5GLU1) Transcription-repair coupling factor OS=Synechococcus sp.
            (strain WH7803) GN=mfd PE=4 SV=1
          Length = 1180

 Score =  539 bits (1388), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 287/646 (44%), Positives = 413/646 (63%), Gaps = 13/646 (2%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S  VDP  +R GD+VVH+  GIG F   K++    S E  +Y+ ++YADG+ ++   Q  
Sbjct: 479  SRTVDPNKMRPGDFVVHRNHGIGRFQ--KLEKLAISGEVRDYLVVQYADGILRVAADQLG 536

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
              L RY   N +  P+ LSK+   S W K K +   A++K+ +DL++LY  R +     +
Sbjct: 537  S-LGRY-RANSDAPPQ-LSKMGG-SAWVKAKERASKALRKVALDLVKLYAERHQAPGFAF 592

Query: 251  P-KSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
            P   P  +E    FPYEPTPDQ +A  +V+KD+ E+  PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 593  PVDGPWQSELEESFPYEPTPDQLKATAEVKKDM-EKSQPMDRLVCGDVGFGKTEVAIRAI 651

Query: 310  RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKS 369
               ++A +Q  +LAPT VLA+QH+  +SERFA YP IKV LL+RF+T  E++  LE +K 
Sbjct: 652  FKAITAGRQVAMLAPTTVLAQQHWRTLSERFAPYP-IKVALLNRFRTAGERKSILEGLKK 710

Query: 370  GELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPR 429
            G +D +VGTH LL     +  LGLLVVDEEQRFGV QKEKI   +  VDVLTLSATPIPR
Sbjct: 711  GTIDAVVGTHQLLSKSTAFDKLGLLVVDEEQRFGVNQKEKIKALRKDVDVLTLSATPIPR 770

Query: 430  TLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKG 489
            TLY++L+G R+ SLITTPPP R PIKTHL++  +E + SAI+ ELDRGGQVFYV+PR++G
Sbjct: 771  TLYMSLSGVREMSLITTPPPLRRPIKTHLAALDEEAIRSAIRQELDRGGQVFYVVPRVEG 830

Query: 490  LEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNAN 549
            +E+V   L +  P +++ + HG+    +LE  M  F  GE  +++ T IVESGLDI   N
Sbjct: 831  IEDVAAQLRQMLPGLKLLVAHGQMAEGELESAMVAFNGGEADVMLCTTIVESGLDIPRVN 890

Query: 550  TIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQ 609
            TI+++D  +FGLAQLYQLRGRVGR+  +A+A+L YP    LS+ A +RL A++E  +LG 
Sbjct: 891  TILIEDAHRFGLAQLYQLRGRVGRSGIQAHAWLFYPGNASLSEAARQRLRAIQEFAQLGS 950

Query: 610  GFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQV 669
            G+QLA RDM IRG G + G +Q+G +  +G DL+ EML ESL++++   + +V     QV
Sbjct: 951  GYQLAMRDMEIRGVGNLLGVEQSGQMEAIGFDLYMEMLQESLAEIQGQDIPSV--DDTQV 1008

Query: 670  DININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLLK 729
            D+ +   +P+++I   +  M     A      D   L++       +YG  P P++ LL+
Sbjct: 1009 DLQVTAFIPADWITDADEKMAAYRAAAECLSGD--ELVELAALWADRYGALPGPVQSLLQ 1066

Query: 730  KLYLRRMAADIGINRIYSSGKTVFMKANITKKVFKMMTDSMTSDIY 775
             + L+ +A   G +RI      + ++  + +  F+++   +   ++
Sbjct: 1067 LMNLKLLAKRCGFSRIRPEKPNIALETPMEEPAFRLLRQGLPQHLH 1112


>A4CVE4_SYNPV (tr|A4CVE4) Transcriptional-repair coupling factor OS=Synechococcus
            sp. (strain WH7805) GN=WH7805_04216 PE=4 SV=1
          Length = 1180

 Score =  538 bits (1386), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 286/646 (44%), Positives = 412/646 (63%), Gaps = 13/646 (2%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S  VDP  +R GD+VVH+  GIG F   K++    S E  +Y+ ++YADG+ ++   Q  
Sbjct: 479  SRTVDPNKMRPGDFVVHRNHGIGRFQ--KLEKLAISGEVRDYLVVQYADGILRVAADQLG 536

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
              L RY   N +  P+ LSK+   S W K K +   A++K+ +DL++LY  R +     +
Sbjct: 537  S-LGRY-RANSDAPPQ-LSKMG-GSAWVKAKERASKALRKVALDLVKLYAERHQAPGFAF 592

Query: 251  P-KSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
            P   P   E    FPYEPTPDQ +A  +V++D+ E+  PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 593  PVDGPWQTELEESFPYEPTPDQLKATAEVKRDM-EKSQPMDRLVCGDVGFGKTEVAIRAI 651

Query: 310  RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKS 369
               ++A +Q  +LAPT VLA+QH+  +SERFA YP IKV LL+RF+T  E++  LE +K 
Sbjct: 652  FKAITAGRQVAMLAPTTVLAQQHWRTLSERFAPYP-IKVALLNRFRTAGERKSILEGLKK 710

Query: 370  GELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPR 429
            G +D +VGTH LL     +  LGLLVVDEEQRFGV QKEKI   +  VDVLTLSATPIPR
Sbjct: 711  GTIDAVVGTHQLLSKSTAFDKLGLLVVDEEQRFGVNQKEKIKALRKDVDVLTLSATPIPR 770

Query: 430  TLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKG 489
            TLY++L+G R+ SLITTPPP R PIKTHL++  +E + SAI+ ELDRGGQVFYV+PR++G
Sbjct: 771  TLYMSLSGVREMSLITTPPPLRRPIKTHLAALDEEAIRSAIRQELDRGGQVFYVVPRVEG 830

Query: 490  LEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNAN 549
            +E+V   L +  P +++ + HG+    +LE  M  F  GE  +++ T IVESGLDI   N
Sbjct: 831  IEDVAGQLRQMLPGLKLLVAHGQMAEGELESAMVAFNGGEADVMLCTTIVESGLDIPRVN 890

Query: 550  TIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQ 609
            TI+++D  +FGLAQLYQLRGRVGR+  +A+A+L YP    LS+ A +RL A++E  +LG 
Sbjct: 891  TILIEDAHRFGLAQLYQLRGRVGRSGIQAHAWLFYPGNASLSEAARQRLRAIQEFAQLGS 950

Query: 610  GFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQV 669
            G+QLA RDM IRG G + G +Q+G +  +G DL+ EML ESL++++   + +V     QV
Sbjct: 951  GYQLAMRDMEIRGVGNLLGVEQSGQMEAIGFDLYMEMLQESLAEIQGQDIPSV--DDTQV 1008

Query: 670  DININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLLK 729
            D+ +   +P+++I   +  M     A      D   L++       +YG  P P++ LL+
Sbjct: 1009 DLQVTAFIPADWITDADEKMAAYRAAAECLSSD--ELVELAALWADRYGALPGPVQSLLQ 1066

Query: 730  KLYLRRMAADIGINRIYSSGKTVFMKANITKKVFKMMTDSMTSDIY 775
             + L+ +A   G +RI      + ++  + +  F+++   +   ++
Sbjct: 1067 LMNLKLLAKRCGFSRIRPEKPNIVLETPMEEPAFRLLRQGLPQHLH 1112


>D4TQP3_9NOST (tr|D4TQP3) Transcription-repair coupling factor OS=Raphidiopsis
            brookii D9 GN=CRD_01459 PE=4 SV=1
          Length = 1202

 Score =  537 bits (1384), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 296/661 (44%), Positives = 418/661 (63%), Gaps = 17/661 (2%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S +VDP  LR GD+VVH+  GIG F+  K++    + E  +Y+ I+YADG+ ++   Q  
Sbjct: 500  SKQVDPNKLRAGDFVVHRSHGIGKFV--KLESLTINDETRDYLVIQYADGVLRVAADQVG 557

Query: 191  KM-LYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPP 249
             +  +R  L     +P  L K+   + W+  K K K AI+K+ VDL++LY  R +Q    
Sbjct: 558  SLSRFRTNL----DRPPQLHKMTGKA-WDNTKNKVKKAIKKLAVDLLQLYAARSQQEGFS 612

Query: 250  YPKS-PAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRA 308
            YP+  P   E    FPY+PT DQ +A  DV++D+ E   PMDRL+CGDVGFGKTEVA+RA
Sbjct: 613  YPQDMPWQEEMEDSFPYQPTIDQLKAVQDVKRDM-ESPRPMDRLVCGDVGFGKTEVAIRA 671

Query: 309  IRCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIK 368
            I   V+A KQ  +LAPT +L +QH+  I ERFA YP I VGLL+RF++  EK    + + 
Sbjct: 672  IFKAVTAGKQVALLAPTTILTQQHYHTIKERFAPYP-IHVGLLNRFRSPEEKRNIQKRLL 730

Query: 369  SGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIP 428
            +GELDI+VGTH LLG  V + +LGLLV+DEEQRFGV QKEKI T KT +DVLTLSATPIP
Sbjct: 731  TGELDIVVGTHQLLGKGVQFKDLGLLVIDEEQRFGVNQKEKIKTLKTHLDVLTLSATPIP 790

Query: 429  RTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIK 488
            RTLY++L+G R+ SLITTPPP R PI+THL+  + + V SAI+ ELDRGGQVFYV+PR++
Sbjct: 791  RTLYMSLSGIREMSLITTPPPTRRPIQTHLAPLNPQIVSSAIRQELDRGGQVFYVVPRVE 850

Query: 489  GLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNA 548
            G+EE    L E  P     I HG+    QLE TM  F+  E  IL+ T I+ESGLDI   
Sbjct: 851  GIEETTTRLREMIPSGRFVIAHGQMDESQLESTMLTFSNHEADILVCTTIIESGLDIPRV 910

Query: 549  NTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELG 608
            NTI+++D  +FGL+QLYQLRGRVGRA  +A+A+L YP +  LSD A +RL A++E  +LG
Sbjct: 911  NTILIEDAHRFGLSQLYQLRGRVGRAGIQAHAWLFYPKQRELSDAARQRLRAIQEFTQLG 970

Query: 609  QGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQ 668
             G+QLA RDM IRG G + G +Q+G +  +G DL+ EML E++ ++    +  V     Q
Sbjct: 971  SGYQLAMRDMEIRGVGNLLGAEQSGQMNAIGFDLYMEMLEEAIREIRGQEIPKV--DDTQ 1028

Query: 669  VDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLL 728
            +D+N+   +P+ YI  ++  M           K+    +    N R  YG  P P   +L
Sbjct: 1029 IDLNLTAFIPATYITDIDQKMSAYRAVATAKSKEELKAIAAEWNDR--YGIIPPPANQML 1086

Query: 729  KKLYLRRMAADIGINRIYSSGKT-VFMKANITKKVFKMMTDSMTSDIYRNSLVLEGDQIK 787
            + + L+++A ++G +RI    K  + ++  + +  + ++   +T ++ +N  V    ++ 
Sbjct: 1087 RVMELKQLAKNLGFSRIKPENKQHIVLETPMEEPAWNLLAQRLTENM-KNRFVYSPGKVT 1145

Query: 788  A 788
            A
Sbjct: 1146 A 1146


>Q7NEP2_GLOVI (tr|Q7NEP2) Transcription-repair coupling factor OS=Gloeobacter
            violaceus (strain PCC 7421) GN=gll3837 PE=4 SV=1
          Length = 1154

 Score =  537 bits (1384), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 289/663 (43%), Positives = 410/663 (61%), Gaps = 22/663 (3%)

Query: 121  GERVGKDGNF--------SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEY 172
            G+RV    NF        S ++D   L  GD+VVH+  GIG F   K++    S    EY
Sbjct: 461  GQRVLATPNFVRKRRRAASKQIDLDKLNPGDFVVHRSHGIGRFA--KLEKLTVSGSAREY 518

Query: 173  VFIEYADGMAKLPVKQSSKMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMV 232
            + IEYADG+ ++   Q +  L RY           LS++   S WEK K K K AIQK+ 
Sbjct: 519  LVIEYADGILRVAADQMNS-LSRY---RSTGGTVQLSRMGSKS-WEKTKQKVKKAIQKIA 573

Query: 233  VDLMELYLHRLKQRRPPYP-KSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDR 291
             DL++LY  R ++ R P+P   P   E    FPY  TPDQ +A  +V+ D+ E E PMDR
Sbjct: 574  FDLLDLYARRAQESRIPFPPDQPWQREMEESFPYPLTPDQARAIQEVKIDM-ESERPMDR 632

Query: 292  LICGDVGFGKTEVALRAIRCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLL 351
            L+CGDVGFGKTEVA+RA    +++  Q  VL PT VLA QH+    ERFA YP I +GLL
Sbjct: 633  LVCGDVGFGKTEVAIRAAFKALTSGVQCAVLVPTTVLASQHYHTFKERFAPYP-ISIGLL 691

Query: 352  SRFQTKAEKEEHLESIKSGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIA 411
            +RF+T +EK++ L  + +GELD+++GTH LLG  V + NLGLLV+DEEQRFGV QKEKI 
Sbjct: 692  NRFRTASEKKDLLARLATGELDLVIGTHQLLGAGVRFQNLGLLVIDEEQRFGVAQKEKIK 751

Query: 412  TFKTSVDVLTLSATPIPRTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIK 471
            T KT VDVLTL+ATPIPRTLY++L+G R+ SLITTPPP R PIKTHL+ +  E V +AI 
Sbjct: 752  TLKTQVDVLTLTATPIPRTLYMSLSGVREMSLITTPPPSRRPIKTHLAPYDPEHVRTAIL 811

Query: 472  YELDRGGQVFYVLPRIKGLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIK 531
             EL RGGQ+FYV  RI+ +++V   L+   P   + +GHG+    +LE TM  F+ GE  
Sbjct: 812  QELGRGGQIFYVYNRIEDIQDVAARLQAMIPTARVCVGHGQMEEGELESTMLAFSGGEFD 871

Query: 532  ILISTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLS 591
            IL+ T I+ESGLDI   NTI+V++  QFGL+QLYQLRGRVGR+  +A+A++ Y  +  L+
Sbjct: 872  ILVCTTIIESGLDIPRVNTILVENAHQFGLSQLYQLRGRVGRSGVQAHAWMFYKQEEALT 931

Query: 592  DQALERLSALEECRELGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESL 651
            D+A +RL A++E  +LG G+QLA RDM IRG G + G +Q+G +  +G DL+ E+L E++
Sbjct: 932  DEARKRLRAIQEFTQLGSGYQLAMRDMEIRGVGNLLGAEQSGQLNAIGFDLYMELLEEAI 991

Query: 652  SKVEEHRVVAVPYHSVQVDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTE 711
             ++   ++  V     Q+D+ +   +P++YI  LE  M    +    A  D   L     
Sbjct: 992  QEIRGRKLPKV--EDTQIDLRVTAFIPADYIPDLEQKMRAYRQV--AAAPDRAQLQAAAL 1047

Query: 712  NLRRQYGKEPRPMEVLLKKLYLRRMAADIGINRIYSSGKTVFMKANITKKVFKMMTDSMT 771
                +YG  P   + LL+ + L+++A  +G  RI   G  + ++  +    ++ +  ++ 
Sbjct: 1048 EWTERYGPVPPAAQQLLRVMELKQVARALGFARIRPEGTNIVLETPMEAPAWEQIHQALP 1107

Query: 772  SDI 774
            +++
Sbjct: 1108 AEV 1110


>G4FLI9_9SYNE (tr|G4FLI9) Transcription-repair coupling factor OS=Synechococcus sp.
            WH 8016 GN=Syn8016DRAFT_0891 PE=4 SV=1
          Length = 1180

 Score =  536 bits (1381), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 285/646 (44%), Positives = 411/646 (63%), Gaps = 13/646 (2%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S  VDP  ++ GD+VVH+  GIG F   K++    S E  +Y+ ++Y+DG+ ++   Q  
Sbjct: 479  SRTVDPNKMQQGDFVVHRNHGIGRFK--KLEKLAISGEVRDYLVVQYSDGILRVAADQLG 536

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
              L R+   ++   P  LSK+   S W K K +   A++K+ +DL++LY  R +     +
Sbjct: 537  S-LGRFRANSDT--PPQLSKMGG-SAWVKAKERASKAVRKVALDLVKLYAERHQAAGFAF 592

Query: 251  P-KSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
            P   P   E    FPYEPT DQ +A +DV++D+ E+  PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 593  PIDGPWQVELEDSFPYEPTSDQLKATVDVKRDM-EKPEPMDRLVCGDVGFGKTEVAIRAI 651

Query: 310  RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKS 369
               ++A KQ  +LAPT VLA+QH+  +SERFA YP IKV LL+RF+T  E++  LE +K+
Sbjct: 652  FKAITAGKQVAMLAPTTVLAQQHWRTLSERFAPYP-IKVALLNRFRTAGERKTILEELKT 710

Query: 370  GELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPR 429
            G +D +VGTH LL     +  LGLLVVDEEQRFGV QKEKI   +  VDVLTLSATPIPR
Sbjct: 711  GTIDAVVGTHQLLSKNTAFDKLGLLVVDEEQRFGVNQKEKIKALRKDVDVLTLSATPIPR 770

Query: 430  TLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKG 489
            TLY++L+G R+ SLITTPPP R PIKTHL++   E V SAI+ ELDRGGQVFYV+PR++G
Sbjct: 771  TLYMSLSGVREMSLITTPPPLRRPIKTHLAALDDEAVRSAIRQELDRGGQVFYVVPRVEG 830

Query: 490  LEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNAN 549
            +E+V   L E  P +++ + HG+    +LE  M  F  GE  +++ T IVESGLDI   N
Sbjct: 831  IEDVAGKLREMLPGLKLLVAHGQMAEGELESAMVAFNGGEADVMLCTTIVESGLDIPRVN 890

Query: 550  TIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQ 609
            TI+++D  +FGLAQLYQLRGRVGR+  +A+A+L YP    LS+ A +RL A++E  +LG 
Sbjct: 891  TILIEDAHRFGLAQLYQLRGRVGRSGVQAHAWLFYPGDASLSEAARQRLRAIQEFAQLGS 950

Query: 610  GFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQV 669
            G+QLA RDM IRG G + G +Q+G +  +G DL+ EML ESL++++   + AV     QV
Sbjct: 951  GYQLAMRDMEIRGVGNLLGVEQSGQMEAIGFDLYMEMLQESLAEIQGQDIPAV--DDTQV 1008

Query: 670  DININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLLK 729
            D+ +   +P+++I   +  M     A      +  +L++       +YG  P P++ LL+
Sbjct: 1009 DLQVTAFIPADWIVDADEKMSAYRAASECLSSE--ALVELAAGWADRYGALPGPVQSLLQ 1066

Query: 730  KLYLRRMAADIGINRIYSSGKTVFMKANITKKVFKMMTDSMTSDIY 775
             + L+ +A   G  RI      + ++  + +  F+++   +   ++
Sbjct: 1067 LMELKLLAKRCGFARIRPEKPNIALETPMEEPAFRLLRQGLPQHLH 1112


>Q0I9I9_SYNS3 (tr|Q0I9I9) Transcription-repair coupling factor OS=Synechococcus sp.
            (strain CC9311) GN=mfd PE=4 SV=1
          Length = 1180

 Score =  535 bits (1379), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 285/646 (44%), Positives = 410/646 (63%), Gaps = 13/646 (2%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S  VDP  ++ GD+VVH+  GIG F   K++    S E  +Y+ ++Y+DG+ ++   Q  
Sbjct: 479  SRTVDPNKMQQGDFVVHRNHGIGRFK--KLEKLAISGEVRDYLVVQYSDGILRVAADQLG 536

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
              L R+   ++   P  LSK+   S W K K +   A++K+ +DL++LY  R +     +
Sbjct: 537  S-LGRFRANSDT--PPQLSKMGG-SAWVKAKERATKAVRKVALDLVKLYAERHQAAGFAF 592

Query: 251  P-KSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
            P   P   E    FPYEPT DQ +A +DV++D+ E+  PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 593  PIDGPWQVELEDSFPYEPTSDQLKATVDVKRDM-EKPEPMDRLVCGDVGFGKTEVAIRAI 651

Query: 310  RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKS 369
               ++A KQ  +LAPT VLA+QH+  +SERFA YP IKV LL+RF+T  E++  LE +K+
Sbjct: 652  FKAITAGKQVAMLAPTTVLAQQHWRTLSERFAPYP-IKVALLNRFRTAGERKTILEELKT 710

Query: 370  GELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPR 429
            G +D +VGTH LL     +  LGLLVVDEEQRFGV QKEKI   +  VDVLTLSATPIPR
Sbjct: 711  GTIDAVVGTHQLLSKNTAFDKLGLLVVDEEQRFGVNQKEKIKALRKDVDVLTLSATPIPR 770

Query: 430  TLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKG 489
            TLY++L+G R+ SLITTPPP R PIKTHL++   E V S+I+ ELDRGGQVFYV+PR++G
Sbjct: 771  TLYMSLSGVREMSLITTPPPLRRPIKTHLAALDDEAVRSSIRQELDRGGQVFYVVPRVEG 830

Query: 490  LEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNAN 549
            +EEV   L E  P +++ + HG+    +LE  M  F  GE  +++ T IVESGLDI   N
Sbjct: 831  IEEVAGKLREMLPGLKLLVAHGQMAEGELESAMVAFNGGEADVMLCTTIVESGLDIPRVN 890

Query: 550  TIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQ 609
            TI+++D  +FGLAQLYQLRGRVGR+  +A+A+L YP    LS+ A +RL A++E  +LG 
Sbjct: 891  TILIEDAHRFGLAQLYQLRGRVGRSGVQAHAWLFYPGDASLSEAARQRLRAIQEFAQLGS 950

Query: 610  GFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQV 669
            G+QLA RDM IRG G + G +Q+G +  +G DL+ EML ESL++++   + AV     QV
Sbjct: 951  GYQLAMRDMEIRGVGNLLGVEQSGQMEAIGFDLYMEMLQESLAEIQGQDIPAV--DDTQV 1008

Query: 670  DININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLLK 729
            D+ +   +P+++I   +  M     A      +  +L++       +YG  P P++ LL+
Sbjct: 1009 DLQVTAFIPADWIVDADEKMSAYRAASECLSSE--ALVELAAGWADRYGALPGPVQSLLQ 1066

Query: 730  KLYLRRMAADIGINRIYSSGKTVFMKANITKKVFKMMTDSMTSDIY 775
             + L+ +A   G  RI      +  +  + +  F+++   +   ++
Sbjct: 1067 LMELKLLAKRCGFARIRPEKPNIAFETPMEEPAFRLLRQGLPQHLH 1112


>Q7VBU2_PROMA (tr|Q7VBU2) Transcription-repair coupling factor OS=Prochlorococcus
            marinus (strain SARG / CCMP1375 / SS120) GN=mfd PE=4 SV=1
          Length = 1170

 Score =  532 bits (1371), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 275/643 (42%), Positives = 416/643 (64%), Gaps = 13/643 (2%)

Query: 134  VDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSSKML 193
            V+P  L++GDYVVH+  G+G F+ I+  +  N  E  +Y+ ++Y+DG  ++   Q S  L
Sbjct: 482  VNPNKLKSGDYVVHRNHGVGKFLKIEKFIVNN--ESRDYLLVQYSDGTLRVAADQLSS-L 538

Query: 194  YRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPYPK- 252
             RY   N + K   ++KL   + W K K + K +I ++ +DL++LY  R   +   +PK 
Sbjct: 539  GRY--RNSSDKSPRINKLGGNT-WTKAKERAKKSISRVAIDLIKLYAERSNSQGFSFPKD 595

Query: 253  SPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAIRCV 312
             P   E    FPYE TPDQ +A  +++ D+ E+  PMDRL+CGDVGFGKTEVA+RA+   
Sbjct: 596  GPWQRELEEAFPYEATPDQIKAVSEIKSDM-EKSFPMDRLVCGDVGFGKTEVAIRALFKA 654

Query: 313  VSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKSGEL 372
            ++A KQ  +LAPT VLA+QH+  +++RFA YP IKV LL+RF++ +EK+E  +S+K+G +
Sbjct: 655  ITAGKQVAILAPTTVLAQQHWRTLTDRFAPYP-IKVSLLNRFKSSSEKKEIAKSLKNGTI 713

Query: 373  DIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPRTLY 432
            D IVGTH LL   + Y +LGLLVVDEEQRFGV QKEKI + K ++DVLTL+ATPIPRTLY
Sbjct: 714  DAIVGTHLLLSKNIEYKDLGLLVVDEEQRFGVNQKEKIKSLKKNIDVLTLTATPIPRTLY 773

Query: 433  LALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKGLEE 492
            ++L+G R+ SLITTPPP+R  IKTHL S   E + SAI  E+ RGGQ+FYV+PRI+G+EE
Sbjct: 774  MSLSGVREMSLITTPPPQRRAIKTHLVSKENEIIRSAICQEIGRGGQIFYVVPRIEGIEE 833

Query: 493  VMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNANTII 552
            V   +++  P++++ I HG+    +LE+ M  F  GE  +++ T I+ESGLDI   NTI+
Sbjct: 834  VATEIKQMVPNIKLIIAHGQMNEGELENAMIAFNAGEADLMLCTTIIESGLDIPRVNTIL 893

Query: 553  VQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQGFQ 612
            ++D  +FGL+QLYQLRGRVGR+  +A+A+L +P    +++ A +RL A++E  ELG G+Q
Sbjct: 894  IEDAHKFGLSQLYQLRGRVGRSGVQAHAWLFFPQDKEVTNNASQRLKAIQEFSELGSGYQ 953

Query: 613  LAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQVDIN 672
            LA RDM IRG G + G QQ+G +  +G DL+ E+L ES+++++   +  V     +VD+ 
Sbjct: 954  LAMRDMEIRGVGNLIGIQQSGQMEIIGFDLYMEILHESIAEIQGQTIPVV--EETKVDLP 1011

Query: 673  INPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLLKKLY 732
            I   +P+ +I   E  +    +A   +  D   L++ T     +YG  P P+E L+  + 
Sbjct: 1012 ITAFIPNTWIKSNEEKLTAYKQASECSTID--KLLELTAIWIDRYGVLPAPVEALILIMK 1069

Query: 733  LRRMAADIGINRIYSSGKTVFMKANITKKVFKMMTDSMTSDIY 775
            L+  +   G +RI  +   + ++  + +  F  + D +   ++
Sbjct: 1070 LKIKSKACGFSRIRLNKPNIVLETMMNESTFSSLRDGLEGHLH 1112


>A9BAJ6_PROM4 (tr|A9BAJ6) Transcriptional-repair coupling factor OS=Prochlorococcus
            marinus (strain MIT 9211) GN=mfd PE=4 SV=1
          Length = 1169

 Score =  528 bits (1361), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 280/655 (42%), Positives = 415/655 (63%), Gaps = 13/655 (1%)

Query: 131  SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            S  +D   LR GDYVVH+  GIG FI I+  V   S E  +Y+ ++Y DG  ++   Q  
Sbjct: 489  SKSIDHNKLRTGDYVVHRNHGIGKFIKIEKFVI--SQESRDYLLVQYQDGTLRVAADQLG 546

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
              L RY   + +K P+ + KL  T+ W   K K + +I K+ +DL+ LY  R K     +
Sbjct: 547  S-LGRY-RSSSDKSPR-IGKLGGTA-WLNAKEKARKSINKVAIDLIRLYAERNKTEGYSF 602

Query: 251  P-KSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
            P  +P  +E    F YEPT DQ  A  DV+ D+ E+  PMDRL+CGDVG+GKTEVA+RA+
Sbjct: 603  PPDAPWQSELEDAFQYEPTHDQLTAIKDVKNDM-EKPKPMDRLVCGDVGYGKTEVAIRAL 661

Query: 310  RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKS 369
               + + KQA +LAPT +L++QH+  +S+RFA YP IK+ LL+RF+T  EK   +E +KS
Sbjct: 662  FKAIISGKQAALLAPTTILSQQHWRTLSDRFAPYP-IKIALLNRFKTSREKNAIVEELKS 720

Query: 370  GELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPR 429
            G +D++VGTH +L N+V + +LGLLVVDEEQRFGVKQKE+I  FK ++DVLTL+ATPIPR
Sbjct: 721  GTIDLVVGTHLILSNKVCFKDLGLLVVDEEQRFGVKQKERIKQFKKNIDVLTLTATPIPR 780

Query: 430  TLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKG 489
            TLY++L+G R+ SLITTPPP R  IKTHL  + +E + SAI  E+DRGGQ+FYV+PRI+G
Sbjct: 781  TLYMSLSGVREMSLITTPPPLRRAIKTHLIPYEEEAIRSAICQEIDRGGQIFYVVPRIEG 840

Query: 490  LEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNAN 549
            + ++   L    P + I I HG+    +LE +M  F   E  +++ T IVESGLDI   N
Sbjct: 841  ITDIATKLSNMIPKIRILIAHGQMDEGELESSMIAFNDWEADLMLCTTIVESGLDIPRVN 900

Query: 550  TIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQ 609
            TI+++D QQFGL+QLYQLRGRVGR+  +A+A+LLYP    ++D+A +RL A++E  +LG 
Sbjct: 901  TILIEDAQQFGLSQLYQLRGRVGRSGVQAHAWLLYPSNTTINDKAKQRLQAIQEFSQLGS 960

Query: 610  GFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQV 669
            G+QL+ RDM IRG G + G QQ+G +  +G D++ EML E +S +E H +  V      +
Sbjct: 961  GYQLSMRDMEIRGVGNLIGLQQSGQMEAIGFDMYMEMLQECISDLEGHEIPKV--DETLI 1018

Query: 670  DININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLLK 729
            D+ IN  +P  +I  ++N  +I           +  L++       +YG  P+P+  L++
Sbjct: 1019 DLPINAFIPGNWI--VDNQEKISAYKAATDCHTSGKLIELGLAWSDRYGALPKPVSSLMQ 1076

Query: 730  KLYLRRMAADIGINRIYSSGKTVFMKANITKKVFKMMTDSMTSDIYRNSLVLEGD 784
             + ++ +   +G +RI      + ++  + +  FK++ + +   ++   L  +G+
Sbjct: 1077 VMQIKLVGKSLGFSRIRQIKPNIILETKMKESTFKVLRNGIDKSLHSRILYKKGN 1131


>A2BRA3_PROMS (tr|A2BRA3) Transcriptional-repair coupling factor OS=Prochlorococcus
            marinus (strain AS9601) GN=mfd PE=4 SV=1
          Length = 1170

 Score =  528 bits (1361), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 281/648 (43%), Positives = 418/648 (64%), Gaps = 17/648 (2%)

Query: 142  GDYVVHKKVGIGMFIGI-KMDVPKNSAEPTEYVFIEYADGMAKLPVKQ-SSKMLYRYCLP 199
            GD++VHK  GIG F+ I K+++   + +  +Y+ I+Y DG   +   Q  S   YR    
Sbjct: 494  GDFIVHKNHGIGKFLKIEKINI---TGDSRDYLVIQYQDGKISVAADQLGSVNRYR---S 547

Query: 200  NENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPYPK-SPAMAE 258
            +   KPK ++KL  T  WE+ K K K  I+K+ VD+++LY  R K +   YP+  P   E
Sbjct: 548  SGKIKPK-INKLGGTE-WERIKDKNKKQIKKVAVDILKLYAKREKLKGYIYPEDGPWQDE 605

Query: 259  FTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAIRCVVSAKKQ 318
                FPY+PTPDQ  A  +++ D+ E E PMDRL+CGDVGFGKTEVA+RAI   +++ KQ
Sbjct: 606  LEESFPYQPTPDQITAVEEIKSDM-ESEKPMDRLVCGDVGFGKTEVAVRAIFKAITSGKQ 664

Query: 319  AMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKSGELDIIVGT 378
             ++LAPT +LA+QH+  IS RF+ YP IKV LL+RF+T  E++E    +K+ ++D++V T
Sbjct: 665  VILLAPTTILAQQHWRTISNRFSPYP-IKVSLLNRFKTVNERKEIYAGLKNNKIDLVVAT 723

Query: 379  HSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPRTLYLALTGF 438
            H +LG  +   NLGLLV+DEEQRFGV+QKEKI   KTS+DVLTLSATPIPRTLY++L+G 
Sbjct: 724  HQILGKEIEIKNLGLLVIDEEQRFGVRQKEKIKKIKTSIDVLTLSATPIPRTLYMSLSGL 783

Query: 439  RDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEVMEFLE 498
            R  SL+ TPPP R  IKT+L+    + + +AI  ELDRGGQ+FYVLPRI  + + +  L+
Sbjct: 784  RQMSLLNTPPPSRRSIKTYLAEIDMDVIRTAINQELDRGGQIFYVLPRISDINQALNKLK 843

Query: 499  ESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNANTIIVQDVQQ 558
              FP ++  + HG+    +LE+ M  F  GE+ ++I T I+ESGLDI   NTII++D  +
Sbjct: 844  NIFPSLKFIVAHGQMNETELENAMIAFNNGEVDLMICTTIIESGLDIPKVNTIIIEDSHK 903

Query: 559  FGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQGFQLAERDM 618
            FGL+QLYQLRGRVGR+  +A+A+L YPD N ++D A +RL A+++  ELG G+QLA +DM
Sbjct: 904  FGLSQLYQLRGRVGRSSVQAHAWLFYPDINKINDAAKQRLKAIKDFSELGSGYQLAMKDM 963

Query: 619  GIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQVDININPHLP 678
             IRG G++ GE+Q+G V  +G DL+ EML E++S++    +  V  +  Q+D+ IN  +P
Sbjct: 964  EIRGVGSLLGEEQSGKVNAIGYDLYIEMLHEAISEISGQEIPEV--NDTQIDLPINAFIP 1021

Query: 679  SEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLLKKLYLRRMAA 738
            + +I + E  +E    A   ++ D   L +   +   +YG  P+P+E L+  + L+ +A 
Sbjct: 1022 ATWILNREEKLEAYKSATECSKND--ELTELATDWVNRYGNLPKPVESLIMIMRLKLLAK 1079

Query: 739  DIGINRIYSSGKTVFMKANITKKVFKMMTDSMTSDIYRNSLVLEGDQI 786
              G ++I      + ++  +    FK++ +S+ S +       EG+Q+
Sbjct: 1080 KCGFSKIKLKKPNILIETKLKNSTFKILKNSLASSVQNKFNFNEGEQL 1127


>A4RX81_OSTLU (tr|A4RX81) Predicted protein OS=Ostreococcus lucimarinus (strain
           CCE9901) GN=OSTLU_38583 PE=4 SV=1
          Length = 754

 Score =  528 bits (1361), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 306/750 (40%), Positives = 458/750 (61%), Gaps = 37/750 (4%)

Query: 93  RTVMDKKEAEKYIQLVKEQQQRGLQKLKGERVG--KDG-NFSYKVDPYTLRNGDYVVHKK 149
           RT MD  EA++ +  + E      +K +  R G  +D    +  +DP+ L  G+YVVH+K
Sbjct: 19  RTSMDSSEADEQVDDMLESAAEVEEKNRRVRDGYVEDAFGVNNAIDPFKLVTGEYVVHRK 78

Query: 150 VGIGMFIGIKMDVPKNSAEPTE---YVFIEYADGMAKLPVKQSSKMLYRYCLPNENKKPK 206
            GIG F+G+K+   +++ E T+   ++F++Y D  AK+  + S ++LYR+C P    KP 
Sbjct: 79  YGIGQFLGMKVLAVESANEGTQNKPFLFLKYQDATAKISPEASRRLLYRFCSPGGLVKPP 138

Query: 207 ALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPYP-KSPAMA-EFTAQFP 264
            L+KLND S W+ R+ K +  I+++VV+ M +YL RL+  R PYP   P  A +F A FP
Sbjct: 139 KLNKLNDKSTWDLRERKTEATIRRLVVNQMVVYLQRLQCVREPYPLPDPERAKQFDASFP 198

Query: 265 YEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAIRCVVSAKKQAMVLAP 324
           +  TPDQ  A  ++ +DL +++ PMDRL+ GDVGFGKTEVA+RA+  V S+     ++AP
Sbjct: 199 FTLTPDQTSAIQEITEDL-QQDAPMDRLVIGDVGFGKTEVAMRAMFHVASSGGGVFMMAP 257

Query: 325 TIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKSGELDIIVGTHSLLG- 383
           T VLAKQH   ++ RF     I V L++R    A++    +  + G++ IIVGTH L+  
Sbjct: 258 TTVLAKQHAANLAVRFRPL-GINVELVTRHIQAAKQNTIFDDFRDGKVQIIVGTHKLVNL 316

Query: 384 NRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPRTLYLALTGFRDASL 443
            +  Y  L LLV+DEEQRFGVK K++I+  K  VDVLTLSATPIPRTL++A++GFRDASL
Sbjct: 317 EQEYYKQLRLLVIDEEQRFGVKHKDQISALKAEVDVLTLSATPIPRTLHMAMSGFRDASL 376

Query: 444 ITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEVMEFLEESFPD 503
           + TPPPER PI T L+  + + +  AI+YE+ R GQ++Y++PRI  + +  + L   FP+
Sbjct: 377 VQTPPPERRPINTVLAPQNDDDIRKAIEYEISRNGQIYYIVPRINMMRDACDRLLRLFPN 436

Query: 504 VEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNANTIIVQDVQQFGLAQ 563
           ++I   HG+   + ++D ME F+ G   +LI+T IVESGLDI N NTII+++VQ FGLA 
Sbjct: 437 LQIMTAHGQMDGEAIDDAMESFSNGSADVLIATTIVESGLDIPNCNTIIIENVQFFGLAS 496

Query: 564 LYQLRGRVGRADKEAYAYLLY-PDKNLLSDQALERLSALEECRELGQGFQLAERDMGIRG 622
           LYQLRGRVGRA ++AYAY+ Y  D++ L+  A ERL+ALEEC  LG+GF+L+ERDMGIRG
Sbjct: 497 LYQLRGRVGRAGRQAYAYMFYSADESELTTGAQERLAALEECCGLGEGFRLSERDMGIRG 556

Query: 623 FGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQV-----DININPHL 677
            GT+FGE+Q+GDV +VG DL+ E+L++ L +++  R+  +    V+V     +  I P  
Sbjct: 557 VGTMFGEKQSGDVDSVGADLYLELLYKQLQRIDNLRIKTIDADDVRVGAAGYEFGITPFY 616

Query: 678 --PSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLLKKLYLRR 735
              +E  + ++  ++ I   E+V   D  +LM      R  +G+   P E  L  ++ R 
Sbjct: 617 IATTEASDEVKATIDSITAHEQV--HDVLALM------RDTFGE---PDEFSLSCVFARE 665

Query: 736 M---AADIGINRIYSSGKTVFMKANITKK--VFKMMTDSMTSDIYRNSLVLEGDQIKAXX 790
           M   A D+GI  I     T  +   IT    + K +     SD Y   ++  G ++K   
Sbjct: 666 MRILAGDLGIQGILLDSPTAPIIDLITDASIMVKELLVEGISDAYDVEIIDTGIRLKTMT 725

Query: 791 XXXXXXXXXXNWIFQCVAELHASLPALIKY 820
                      +  + + ++  S+P+ +KY
Sbjct: 726 DMTMHGKVM--YTVKILRQITGSIPSFVKY 753


>B9P217_PROMR (tr|B9P217) Transcription-repair coupling factor OS=Prochlorococcus
            marinus str. MIT 9202 GN=mfd PE=4 SV=1
          Length = 1169

 Score =  525 bits (1351), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 282/656 (42%), Positives = 419/656 (63%), Gaps = 22/656 (3%)

Query: 133  KVDPYTLRNGDYVVHKKVGIGMFIGI-KMDVPKNSAEPTEYVFIEYADGMAKLPVKQ-SS 190
            K++P     GD++VHK  GIG F+ I K+++   + +  +Y+ I+Y DG   +   Q  S
Sbjct: 490  KINP-----GDFIVHKNHGIGKFLKIEKINI---TGDSRDYLVIQYQDGKISVAADQLGS 541

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
               YR    +   KPK ++KL  T  WE+ K K K  I+K+ VD+++LY  R K +   Y
Sbjct: 542  VNRYR---SSGKIKPK-INKLGGTE-WERIKDKNKKQIKKVAVDILKLYAKREKLKGYIY 596

Query: 251  PK-SPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
            P+  P   E    FPY+PTPDQ  A  +++ D+ E + PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 597  PEDGPWQDELEESFPYQPTPDQITAVEEIKSDM-ESDKPMDRLVCGDVGFGKTEVAVRAI 655

Query: 310  RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKS 369
               +++ KQ ++LAPT +LA+QH+  I+ RF+ YP IKV LL+RF+T  E+ E    +K+
Sbjct: 656  FKAITSGKQVILLAPTTILAQQHWRTINNRFSPYP-IKVSLLNRFKTVNERNEIYAGLKN 714

Query: 370  GELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPR 429
             E+D++V TH +LG      NLGLLV+DEEQRFGV+QKEKI   KT++DVLTLSATPIPR
Sbjct: 715  NEIDLVVATHQILGKETEIKNLGLLVIDEEQRFGVRQKEKIKKIKTNIDVLTLSATPIPR 774

Query: 430  TLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKG 489
            TLY++L+G R  SL+ TPPP R  IKT+LS    + + +AI  ELDRGGQ+FYVLPRI  
Sbjct: 775  TLYMSLSGLRQMSLLNTPPPSRRSIKTYLSEIDMDVIRTAINQELDRGGQIFYVLPRISD 834

Query: 490  LEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNAN 549
            +++ +  L+  FP ++  + HG+    +LE+ M  F  GE+ ++I T I+ESGLDI   N
Sbjct: 835  IDQAVNKLKIMFPSLKFIVAHGQMNETELENAMIAFNNGEVDLMICTTIIESGLDIPKVN 894

Query: 550  TIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQ 609
            TII++D  +FGL+QLYQLRGRVGR+  +A+A+L YP+ N ++D A +RL A+++  ELG 
Sbjct: 895  TIIIEDSHKFGLSQLYQLRGRVGRSGVQAHAWLFYPNINKINDAAKQRLKAIKDFSELGS 954

Query: 610  GFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQV 669
            G+QLA +DM IRG G++ GE+Q+G V  +G DL+ EML E++S++    +  V  +  Q+
Sbjct: 955  GYQLAMKDMEIRGVGSLLGEEQSGKVNAIGYDLYIEMLHEAISEISGQEIPEV--NDTQI 1012

Query: 670  DININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLLK 729
            D+ IN  +P+ +I + E  +E    A   +  D   L +   +   +YG  P+P+E L+ 
Sbjct: 1013 DLPINAFIPATWILNREEKLEAYKSATECSNND--ELTELATDWVNRYGNLPKPVESLIM 1070

Query: 730  KLYLRRMAADIGINRIYSSGKTVFMKANITKKVFKMMTDSMTSDIYRNSLVLEGDQ 785
             + L+ +A   G N+I      + ++  +    FK++ +S+ S +       EG+Q
Sbjct: 1071 IMRLKLLAKKCGFNKIKLKKPNIVIETKLKNSTFKILKNSLASSVQNKFNFNEGEQ 1126


>D3EMV7_UCYNA (tr|D3EMV7) Transcription-repair coupling factor OS=cyanobacterium
            UCYN-A GN=UCYN_00510 PE=4 SV=1
          Length = 1151

 Score =  524 bits (1349), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 277/641 (43%), Positives = 411/641 (64%), Gaps = 19/641 (2%)

Query: 133  KVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSSKM 192
            KV+   L +GD+VVHK  GIG F+ ++      +    EY+ ++Y+DG+ ++P      +
Sbjct: 482  KVNLQKLNSGDHVVHKSHGIGKFLRLE------NLSNREYLVVQYSDGVLRVPADSLDNL 535

Query: 193  LYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPYPK 252
            L   C    +  P  L K+     W K K K +  I+K+  +L+ LY  R +++   YP 
Sbjct: 536  LRYSC---TDSTPPKLHKMTGKD-WGKLKQKIRKNIKKLAFNLLHLYAERAQKKGYSYPA 591

Query: 253  -SPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI-R 310
             S    E    FPY+ TPDQ QA  +V+ DL E   PMDRLICGDVGFGKTEVA+RAI +
Sbjct: 592  DSLWQQELEDSFPYQATPDQVQAIREVKIDL-ESNRPMDRLICGDVGFGKTEVAIRAIFK 650

Query: 311  CVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKSG 370
             V S  KQ + LAPT +L +QH++ +  RFA YP I +GLL+RF+T +EK++ +E + +G
Sbjct: 651  VVTSGHKQVVFLAPTTILTQQHYNTLRTRFAPYP-ISIGLLNRFRTTSEKKDIIERLTTG 709

Query: 371  ELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPRT 430
            ELDI+VGT  LLG  + + +LGLLV+DEEQRFGV  KEKI T K +VDVLTL+ATPIPRT
Sbjct: 710  ELDIVVGTQQLLGKNIKFKDLGLLVIDEEQRFGVNHKEKIRTIKANVDVLTLTATPIPRT 769

Query: 431  LYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKGL 490
            L+++L+G R+ SLI+TPPP R  IKTHLSS+    V +A++ ELDRGGQVFYV+PRI+ +
Sbjct: 770  LHMSLSGIREMSLISTPPPSRRSIKTHLSSYDPNLVKAAVRAELDRGGQVFYVVPRIEHI 829

Query: 491  EEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNANT 550
            +E++  L+   PD +I + HG+     LE TM  F  G+  IL+ T I+ESGLDI   NT
Sbjct: 830  DELVLQLKRMIPDAKILVAHGQMDVNNLELTMLSFNNGDADILVCTTIIESGLDIPKVNT 889

Query: 551  IIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQG 610
            II++D Q+FGL+QLYQLRGRVGR+  +A+A+L YP ++ L+D AL+RL+AL+E  ELG G
Sbjct: 890  IIIEDAQKFGLSQLYQLRGRVGRSGIQAHAWLFYPSRSELTDNALKRLNALQEFSELGSG 949

Query: 611  FQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQVD 670
            + LA RD+ IRG G + G +Q+G +  +G +L+ +ML E++ +V+  ++  V     Q+D
Sbjct: 950  YHLATRDLEIRGAGNLLGAEQSGQMEAIGFELYMDMLQEAIKEVQGEKIPEV--EDTQID 1007

Query: 671  ININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLLKK 730
            + +   +P++YI  +E  +         + K    L+        +YG  P P++ LLK 
Sbjct: 1008 LKLTAFIPNDYIADIEQKIIAYRTVAVASSKKELDLI--VAEWSERYGSIPDPVKQLLKT 1065

Query: 731  LYLRRMAADIGINRIYSSGK-TVFMKANITKKVFKMMTDSM 770
            + L++++  +G + I   GK +V +K  + +  + ++ + +
Sbjct: 1066 IELKQLSKSLGFSHIKIEGKNSVVLKTPMEEPAWIILQNKL 1106


>A8G4Z6_PROM2 (tr|A8G4Z6) Transcriptional-repair coupling factor OS=Prochlorococcus
            marinus (strain MIT 9215) GN=mfd PE=4 SV=1
          Length = 1169

 Score =  523 bits (1347), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 279/647 (43%), Positives = 416/647 (64%), Gaps = 17/647 (2%)

Query: 142  GDYVVHKKVGIGMFIGI-KMDVPKNSAEPTEYVFIEYADGMAKLPVKQ-SSKMLYRYCLP 199
            GD++VHK  GIG F+ I K+++   + +  +Y+ I+Y DG   +   Q  S   YR    
Sbjct: 494  GDFIVHKNHGIGKFLKIEKINI---TGDSRDYLVIQYQDGKISVAADQLGSVNRYR---S 547

Query: 200  NENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPYPK-SPAMAE 258
            +   KPK ++KL  T  WE+ K K K  I+K+ VD+++LY  R K +   YP+  P   E
Sbjct: 548  SGKIKPK-INKLGGTE-WERIKDKNKKQIKKVAVDILKLYAKREKLKGYIYPEDGPWQDE 605

Query: 259  FTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAIRCVVSAKKQ 318
                FPY+PTPDQ  A  +++ D+ E + PMDRL+CGDVGFGKTEVA+RAI   +++ KQ
Sbjct: 606  LEESFPYQPTPDQITAVEEIKSDM-ESDKPMDRLVCGDVGFGKTEVAVRAIFKAITSGKQ 664

Query: 319  AMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKSGELDIIVGT 378
             ++LAPT +LA+QH+  I+ RF+ YP IKV LL+RF+T  E++E    +K+ ++D++V T
Sbjct: 665  VILLAPTTILAQQHWRTINNRFSPYP-IKVSLLNRFKTVNERKEIYAGLKNNKIDLVVAT 723

Query: 379  HSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPRTLYLALTGF 438
            H +LG  +   NLGLLV+DEEQRFGV+QKEKI   KT++DVLTLSATPIPRTLY++L+G 
Sbjct: 724  HQILGKEIEIKNLGLLVIDEEQRFGVRQKEKIKKIKTNIDVLTLSATPIPRTLYMSLSGL 783

Query: 439  RDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEVMEFLE 498
            R  SL+ TPPP R  IKT+LS    + + +AI  ELDRGGQ+FYVLPRI  +++ +  L+
Sbjct: 784  RQMSLLNTPPPSRRSIKTYLSEIDMDVIRTAINQELDRGGQIFYVLPRISDIDQAVNKLK 843

Query: 499  ESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNANTIIVQDVQQ 558
              FP ++  + HG+     LE+ M  F  GE+ ++I T I+ESGLDI   NTII++D  +
Sbjct: 844  IMFPSLKFIVAHGQMNETDLENAMIAFNNGEVDLMICTTIIESGLDIPKVNTIIIEDSHK 903

Query: 559  FGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQGFQLAERDM 618
            FGL+QLYQLRGRVGR+  +A+A+L YP+ N ++D A +RL A+++  ELG G+QLA +DM
Sbjct: 904  FGLSQLYQLRGRVGRSGVQAHAWLFYPNINKINDAAKQRLKAIKDFSELGSGYQLAMKDM 963

Query: 619  GIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQVDININPHLP 678
             IRG G++ GE+Q+G V  +G DL+ EML E++S++    +  V  +  Q+D+ IN  +P
Sbjct: 964  EIRGVGSLLGEEQSGKVNAIGYDLYIEMLHEAISEISGQEIPEV--NDTQIDLPINAFIP 1021

Query: 679  SEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLLKKLYLRRMAA 738
            + +I + E  +E    A   +  D   L +   +   +YG  P+P+E L+  + L+ +A 
Sbjct: 1022 ATWILNREEKLEAYKSATECSNND--ELTELATDWVNRYGNLPKPVESLIMIMRLKLLAK 1079

Query: 739  DIGINRIYSSGKTVFMKANITKKVFKMMTDSMTSDIYRNSLVLEGDQ 785
              G N+I      + ++  +    FK++ +S+ S +       EG+Q
Sbjct: 1080 KCGFNKIKLKKPNIVIETKLKNSTFKILKNSLASSVQNKFNFNEGEQ 1126


>Q31AS4_PROM9 (tr|Q31AS4) Transcription-repair coupling factor OS=Prochlorococcus
            marinus (strain MIT 9312) GN=PMT9312_0961 PE=4 SV=1
          Length = 1174

 Score =  522 bits (1345), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 275/636 (43%), Positives = 415/636 (65%), Gaps = 17/636 (2%)

Query: 142  GDYVVHKKVGIGMFIGI-KMDVPKNSAEPTEYVFIEYADGMAKLPVKQ-SSKMLYRYCLP 199
            GD++VHK  GIG F+ I K+++   + +  +Y+ I+Y DG   +   Q  S   YR    
Sbjct: 494  GDFIVHKNHGIGKFLKIEKINI---TGDSRDYLVIQYQDGKISVAADQLGSVNRYR---S 547

Query: 200  NENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPYPK-SPAMAE 258
            +   KPK ++KL  T  WE+ K K K  I+K+ VD+++LY  R K +   YP+  P   E
Sbjct: 548  SGKIKPK-INKLGGTE-WERIKDKNKKQIKKVAVDILKLYAKREKLKGHIYPEDGPWQDE 605

Query: 259  FTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAIRCVVSAKKQ 318
                FPY+PTPDQ  A  +++ D+ E + PMDRL+CGDVGFGKTEVA+RAI   +++ KQ
Sbjct: 606  LEESFPYQPTPDQITAVKEIKSDM-ESDKPMDRLVCGDVGFGKTEVAVRAIFKAITSGKQ 664

Query: 319  AMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKSGELDIIVGT 378
             ++LAPT +LA+QH+  I+ RF+ YP IKV LL+RF+T  E++E    +K+ ++D++V T
Sbjct: 665  VILLAPTTILAQQHWRTINNRFSPYP-IKVSLLNRFKTVNERKEIYAGLKNNKIDLVVAT 723

Query: 379  HSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPRTLYLALTGF 438
            H +LG  +   NLGLLV+DEEQRFGV+QKEKI   KT++DVLTLSATPIPRTLY++L+G 
Sbjct: 724  HQILGKEIEIKNLGLLVIDEEQRFGVRQKEKIKKIKTNIDVLTLSATPIPRTLYMSLSGL 783

Query: 439  RDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEVMEFLE 498
            R  SL+ TPPP R  IKT+LS    + + +AI  ELDRGGQ+FYVLPRI  +++ +  L+
Sbjct: 784  RQMSLLNTPPPSRRSIKTYLSEIDMDVIRTAINQELDRGGQIFYVLPRISDIDQAVNKLK 843

Query: 499  ESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNANTIIVQDVQQ 558
              FP+++  I HG+    +LE++M  F  GE+ ++I T I+ESGLDI   NTII++D  +
Sbjct: 844  NMFPNLKFIIAHGQMNETELENSMISFNNGEVDLMICTTIIESGLDIPKVNTIIIEDSHK 903

Query: 559  FGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQGFQLAERDM 618
            FGL+QLYQLRGRVGR+  +A+A+L YP+ N ++D A +RL A+++  ELG G+QLA +DM
Sbjct: 904  FGLSQLYQLRGRVGRSGIQAHAWLFYPNLNKINDSAKQRLKAIKDFSELGSGYQLAMKDM 963

Query: 619  GIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQVDININPHLP 678
             IRG G++ GE+Q+G V  +G DL+ EML E++S++    +  V     Q+D+ IN  +P
Sbjct: 964  EIRGVGSLLGEEQSGKVNAIGYDLYIEMLHEAISEISGQEIPEVS--DTQIDLQINAFIP 1021

Query: 679  SEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLLKKLYLRRMAA 738
            + +I + E  ++    A   +      L +  ++   +YG  P+P+E L+  + L+ +A 
Sbjct: 1022 ATWILNREEKLDAYKSATECSNNK--ELTELAKDWINRYGTLPKPVESLIMLMKLKLIAK 1079

Query: 739  DIGINRIYSSGKTVFMKANITKKVFKMMTDSMTSDI 774
              G N+I      + ++  + K  FK++ +S+ + +
Sbjct: 1080 KCGFNKIKLKKPNIIIETKLRKSTFKILKNSLPNSV 1115


>A3PD28_PROM0 (tr|A3PD28) Transcriptional-repair coupling factor OS=Prochlorococcus
            marinus (strain MIT 9301) GN=mfd PE=4 SV=1
          Length = 1169

 Score =  522 bits (1344), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 276/648 (42%), Positives = 418/648 (64%), Gaps = 17/648 (2%)

Query: 142  GDYVVHKKVGIGMFIGI-KMDVPKNSAEPTEYVFIEYADGMAKLPVKQ-SSKMLYRYCLP 199
            GD++VHK  GIG F+ I K+++   + +  +Y+ I+Y DG   +   Q  S   YR    
Sbjct: 494  GDFIVHKNHGIGKFLKIEKINL---TGDSRDYLVIQYQDGKISVAADQLGSVNRYR---S 547

Query: 200  NENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPYPK-SPAMAE 258
            +   KPK ++KL  T  WE+ K K K  I+K+ VD+++LY  R K +   YP+  P   E
Sbjct: 548  SGKIKPK-INKLGGTE-WERIKDKNKKQIKKVAVDILKLYAKREKLKGHIYPEDGPWQDE 605

Query: 259  FTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAIRCVVSAKKQ 318
                FPY+PTPDQ  A  +++ D+ E + PMDRL+CGDVGFGKTEVA+RAI   +++ KQ
Sbjct: 606  LEESFPYQPTPDQITAVKEIKSDM-ESDKPMDRLVCGDVGFGKTEVAVRAIFKAITSGKQ 664

Query: 319  AMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKSGELDIIVGT 378
             + LAPT +LA+QH+  I+ RF+ YP IKV LL+RF++  E+ E    +K+ ++D++V T
Sbjct: 665  VIFLAPTTILAQQHWRTINNRFSPYP-IKVSLLNRFKSINERREIYAGLKNNKIDLVVAT 723

Query: 379  HSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPRTLYLALTGF 438
            H +LG  +   NLGLLV+DEEQRFGV+QKEKI   KT++DVLTLSATPIPRTLY++L+G 
Sbjct: 724  HQILGKEIEIKNLGLLVIDEEQRFGVRQKEKIKKIKTNIDVLTLSATPIPRTLYMSLSGL 783

Query: 439  RDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEVMEFLE 498
            R  SL+ TPPP R  IKT+LS    + + +AI  ELDRGGQ+FYVLPRI  +++ ++ L+
Sbjct: 784  RQMSLLNTPPPSRRSIKTYLSEIDMDVIRTAINKELDRGGQIFYVLPRISDIDQAIDKLK 843

Query: 499  ESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNANTIIVQDVQQ 558
               P+++  + HG+    +LE+ M  F  GE+ ++I T I+ESGLDI   NTII++D  +
Sbjct: 844  NMIPNLKFIVAHGQMNETELENAMIAFNNGEVDLMICTTIIESGLDIPKVNTIIIEDSHK 903

Query: 559  FGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQGFQLAERDM 618
            FGL+QLYQLRGRVGR+  +A+A+L YP+ N ++D A +RL A+++  ELG G+QLA +DM
Sbjct: 904  FGLSQLYQLRGRVGRSGVQAHAWLFYPNINKINDAAKQRLKAIKDFSELGSGYQLAMKDM 963

Query: 619  GIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQVDININPHLP 678
             IRG G++ GE+Q+G V  +G DL+ EML E++S++    +  V  +  Q+D+ IN  +P
Sbjct: 964  EIRGVGSLLGEEQSGKVNAIGYDLYIEMLHEAISEISGQEIPEV--NDTQIDLPINAFIP 1021

Query: 679  SEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLLKKLYLRRMAA 738
            + +I + E  +E    A   +  + + L +   +   +YG  P+P+E L+  + L+ +A 
Sbjct: 1022 ATWILNREEKLEAYKSATECS--NNYELTELATDWVNRYGNLPKPVESLIMIMRLKLLAK 1079

Query: 739  DIGINRIYSSGKTVFMKANITKKVFKMMTDSMTSDIYRNSLVLEGDQI 786
              G N+I      + ++  +    FK++ +S+ S +       EG+Q+
Sbjct: 1080 KCGFNKIKLKKPNILIETKLKNSTFKILKNSLASSVQNKFNFNEGEQL 1127


>C1FDV6_MICSR (tr|C1FDV6) Predicted protein (Fragment) OS=Micromonas sp. (strain
           RCC299 / NOUM17) GN=MICPUN_65906 PE=4 SV=1
          Length = 570

 Score =  508 bits (1307), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 271/567 (47%), Positives = 368/567 (64%), Gaps = 35/567 (6%)

Query: 134 VDPYTLRNGDYVVHKKVGIGMFIGIKM----DVPKNSAEPTE----------YVFIEYAD 179
           +DP+ L  G+ V+H+K GIG F+G++     D        T+          Y+FIEYAD
Sbjct: 1   IDPFKLIPGELVIHRKFGIGRFLGVRSIAMDDCSGKECHSTKECHSASTRVGYLFIEYAD 60

Query: 180 GMAKLPVKQSSKMLYRYCLPNENK---KPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLM 236
             AK+  +++   LYR+  P   K   K   LS++ D   WE+R+   +  I+ +V+  M
Sbjct: 61  ATAKIRPEKARFQLYRFASPGTIKSGVKIPKLSRIKDRKRWEQRENIARKHIRHLVMGQM 120

Query: 237 ELYLHRLKQRRPPY--PKSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLIC 294
            +YL RL+  R PY  P       F   FP++ TPDQ  A  D  +DLTER+TPMDR+I 
Sbjct: 121 SIYLQRLQSVRKPYCPPSEDIYQRFNELFPHDLTPDQALAVQDCYEDLTERDTPMDRIIV 180

Query: 295 GDVGFGKTEVALRAIRCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRF 354
           GDVGFGKTEVA+RA+  V S   Q  VLAPT VLAKQH   ++ R   +    + L++R 
Sbjct: 181 GDVGFGKTEVAMRAVFRVFSGGGQIFVLAPTTVLAKQHAATMTARLRPF-GASIDLMTRN 239

Query: 355 QTKAEKEEHLESIKSGELDIIVGTHSLLG-NRVVYSNLGLLVVDEEQRFGVKQKEKIATF 413
             +AEK++ +E   +G + ++VGTHSLL     +Y  L LLV+DEEQRFGVK K+KI++ 
Sbjct: 240 VKEAEKKDIIERWLAGRIHVLVGTHSLLNLPSTMYDPLNLLVIDEEQRFGVKHKDKISSL 299

Query: 414 KTSVDVLTLSATPIPRTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYE 473
           K+SVDVLTLSATPIPRTL++A+ GFRDASL+TTPPPER PI T L  + +  V  AI+YE
Sbjct: 300 KSSVDVLTLSATPIPRTLHMAMAGFRDASLVTTPPPERRPIITRLQVYEQSVVHQAIQYE 359

Query: 474 LDRGGQVFYVLPRIKGLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKIL 533
           L RGGQ+FYV+PRI+ +    + L+E F D+ I   HG+   + L+  M++FA G   IL
Sbjct: 360 LGRGGQIFYVVPRIQMMNAAKKRLKEIFQDIIILEVHGQMKGEYLDHAMDEFASGRAHIL 419

Query: 534 ISTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQ 593
           + T IVESGLDI N NTIIV++VQQFGLA LYQLRGRVGRA ++AYAY+ + ++  + + 
Sbjct: 420 LCTTIVESGLDIPNVNTIIVEEVQQFGLASLYQLRGRVGRAGRQAYAYMFHAERGGMHND 479

Query: 594 ALERLSALEECRELGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSK 653
           A ERL ALEEC  LG+GF+LAERDM IRG GT+FGE+Q+G++ ++G DL+ E L+E L K
Sbjct: 480 AQERLLALEECCGLGEGFRLAERDMAIRGVGTLFGEKQSGEMDSIGADLYLEFLYEQLEK 539

Query: 654 VEEHRVVAVPYHSVQVDININPHLPSE 680
           +E               +++NP  PSE
Sbjct: 540 IEM--------------LSLNPITPSE 552


>A2BWG1_PROM5 (tr|A2BWG1) Transcriptional-repair coupling factor OS=Prochlorococcus
            marinus (strain MIT 9515) GN=mfd PE=4 SV=1
          Length = 1175

 Score =  506 bits (1302), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 273/657 (41%), Positives = 409/657 (62%), Gaps = 24/657 (3%)

Query: 133  KVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQ-SSK 191
            K++P     GDY+VHK  GIG F+  K++    + E  +Y+ I+Y DG   +   Q  S 
Sbjct: 491  KINP-----GDYIVHKNHGIGQFL--KLEKINITGESRDYLVIKYLDGKISVAADQLGSI 543

Query: 192  MLYRYCLPNENKKPKALSKLNDT--SVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPP 249
              YR          K + K+N    + W K K K +  I+K+  D+++LY  R K +   
Sbjct: 544  NRYRST-------GKIMPKINKLGGAEWLKIKDKNRKIIKKVAYDILKLYAKREKLKGHI 596

Query: 250  YPK-SPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRA 308
            YP+  P   E    FPY+PTPDQ  A  +++ D+ E + PMDRL+CGDVGFGKTEVA+RA
Sbjct: 597  YPEDGPWQKELEESFPYQPTPDQLTAVKEIKIDM-ESDKPMDRLVCGDVGFGKTEVAVRA 655

Query: 309  IRCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIK 368
            I   +++ KQ ++LAPT +LA+QH+   + RF+ YP IKV LL+RF+T +EK++    +K
Sbjct: 656  IFKAITSGKQVILLAPTTILAQQHWRTFNNRFSPYP-IKVSLLNRFKTSSEKKDIYAGLK 714

Query: 369  SGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIP 428
            + ++D++V TH +LG  +   NLGLLV+DEEQRFGV+QKEKI   KT++DVLTLSATPIP
Sbjct: 715  NNKIDLVVATHQILGKEIEIKNLGLLVIDEEQRFGVRQKEKIKNIKTNIDVLTLSATPIP 774

Query: 429  RTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIK 488
            RTLY++L+G R  SL+ TPPP R  IKT+LS    + + +AI  ELDRGGQ+FYVLPRI 
Sbjct: 775  RTLYMSLSGLRQMSLLNTPPPSRRSIKTYLSEIDMDVIRTAISQELDRGGQIFYVLPRIS 834

Query: 489  GLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNA 548
             +++ +  L   F D++  + HG+     LE+ M  F  GE+ ++I T I+ESGLDI   
Sbjct: 835  DIDQAVNKLTNMFNDLKFIVAHGQMNEIDLENAMIAFNNGEVDLMICTTIIESGLDIPKV 894

Query: 549  NTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELG 608
            NTII++D  +FGL+QLYQLRGRVGR+  +A+A+L YP+ N +++ + +RL A+++  ELG
Sbjct: 895  NTIIIEDSHKFGLSQLYQLRGRVGRSGIQAHAWLFYPNLNNINEASKQRLKAIKDFSELG 954

Query: 609  QGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQ 668
             G+QLA +DM IRG G++ GE+Q+G V  +G DL+ EML E++S++    +  V     Q
Sbjct: 955  SGYQLAMKDMEIRGVGSLLGEEQSGKVNAIGYDLYIEMLHEAISEINGQEIPEV--KDTQ 1012

Query: 669  VDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLL 728
            VD+ IN  +P+ +I + E  ++   EA          L +   +   +YG  P+P+E L+
Sbjct: 1013 VDLPINAFIPATWILNREEKLDAYKEATECNTHK--ELTELATDWSNRYGVLPKPVESLI 1070

Query: 729  KKLYLRRMAADIGINRIYSSGKTVFMKANITKKVFKMMTDSMTSDIYRNSLVLEGDQ 785
              + L+ +A   G N+I      + ++  +    FK++  ++ ++I       E DQ
Sbjct: 1071 LLMKLKLLAKKCGFNKIKLKKPNIIIETRLKISTFKLIKKALPTNIQNKFSFEEDDQ 1127


>L8N3C7_9CYAN (tr|L8N3C7) Transcription-repair coupling factor OS=Pseudanabaena
            biceps PCC 7429 GN=Pse7429DRAFT_0371 PE=4 SV=1
          Length = 1113

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 274/651 (42%), Positives = 402/651 (61%), Gaps = 13/651 (1%)

Query: 129  NFSYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQ 188
            N +  V+P  L  GDYVVH+K GIG F   +    K   +P  +  +E+ADG   + + Q
Sbjct: 436  NRAKSVNPDELNVGDYVVHRKYGIGKFTRFETIEVKGEKQP--HYIVEFADGKTAVAIAQ 493

Query: 189  SS-KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRR 247
             + K+L RY   + + KP  L+ + +T  W+   +K +  I K+  DL++LY+ R     
Sbjct: 494  ENEKILSRY--RSASNKPPKLNSIANTKAWDNALSKCQKEIYKLARDLLQLYVRRANLVG 551

Query: 248  PPYP-KSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVAL 306
              +P  +    E    FPY+ TPDQ +A  DV++D+ E + PMDRL+CGDVGFGKTEVA+
Sbjct: 552  YAFPPDTDWQQEMEDSFPYQLTPDQVKAVQDVKQDM-ESDRPMDRLVCGDVGFGKTEVAV 610

Query: 307  RAIRCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLES 366
            RAI   + A KQ  +LAPT +LA+QHF  +  RFA YP   V +++RF+   E+++ L+ 
Sbjct: 611  RAIFKAICAGKQVALLAPTTILAQQHFHTLQTRFAAYP-FTVEIVNRFRPAKERKQVLQH 669

Query: 367  IKSGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATP 426
            +  G++ +IVGTH LL   V + +LGLLV+DEEQRFG  QKEKI   K  VD+LTLSATP
Sbjct: 670  VADGKVQVIVGTHQLLSKDVEFHDLGLLVIDEEQRFGTLQKEKIKAMKGDVDLLTLSATP 729

Query: 427  IPRTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPR 486
            IPRTLY AL+G R+ S+I TPPP R  I+THLS++    V +AI++ELDRGGQVFYV+PR
Sbjct: 730  IPRTLYAALSGVREMSVIATPPPSRRSIQTHLSAYDASLVKTAIRHELDRGGQVFYVVPR 789

Query: 487  IKGLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQ 546
            I+G+E + + L    P+V +AI HG+    +LE  M  F   E  IL+ T I+ESGLDI 
Sbjct: 790  IEGIEAIADSLRLMLPNVRLAIAHGQMQESELEAAMVAFNNNEADILLCTTIIESGLDIP 849

Query: 547  NANTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRE 606
              NTI+++D  + GLAQLYQLRGRVGRA  +A+AYLLYP    L+D A +RL A++E  +
Sbjct: 850  RVNTIVIEDAHKLGLAQLYQLRGRVGRAGIQAHAYLLYPPNLELTDAAKKRLDAIQEFSQ 909

Query: 607  LGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHS 666
            LG G+QLA RDM IRG G + GE+Q+G    +G  L+ ++L E ++++    +  V    
Sbjct: 910  LGSGYQLAMRDMEIRGLGDLLGEEQSGQADVIGFALYMDLLQEYINELRGKILPEVADTE 969

Query: 667  VQVDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEV 726
            +Q+   +   +P  YI   E  +       +V  K+   +++        YG  P   +V
Sbjct: 970  LQLP-RLVAFIPDSYIEDNETKINAYLTLAKVKSKE--EILKLAAVWEGLYGALPEETQV 1026

Query: 727  LLKKLYLRRMAADIGINRIYSS--GKTVFMKANITKKVFKMMTDSMTSDIY 775
            LL+ + L+ +A  +G+ RIYSS  G+ +F+ + +T  +++++   +  + Y
Sbjct: 1027 LLRVMELKLVARQVGVFRIYSSEDGRDLFLDSKLTDSLWELLHAKIPIEFY 1077


>Q019N9_OSTTA (tr|Q019N9) Putative helicase (ISS) OS=Ostreococcus tauri
           GN=Ot05g01310 PE=4 SV=1
          Length = 905

 Score =  503 bits (1296), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 281/653 (43%), Positives = 403/653 (61%), Gaps = 41/653 (6%)

Query: 108 VKEQQQRGLQKLKGERVGKDGNFSYKVDPYTLRNGDYVVHKKVGIGMFIGIKM---DVPK 164
           V+EQ +R  +       G     S  +DP+ L  G++VVH+K GIG ++G+K+   D P 
Sbjct: 202 VEEQNKRLREGYSESEFG----VSNSIDPFKLVAGEFVVHRKYGIGQYLGLKVLPVDQPN 257

Query: 165 NSAEPTEYVFIEYADGMAKLPVKQSSKMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKG 224
              +   ++F++Y D  AK+  + S ++LYR+C P    KP  L+KL D++ W+ R+ K 
Sbjct: 258 GDTKNKPFLFLKYQDATAKISPEASRRLLYRFCSPGALVKPPKLNKLKDSTTWDLREKKT 317

Query: 225 KVAIQKMVVDLMELYLHRLKQRRPPY--PKSPAMAEFTAQFPYEPTPDQKQAFIDVEKDL 282
           +  I+++VV+ M +YL RL+  R PY  P + ++  F   FPY+ TPDQ +A  D+  DL
Sbjct: 318 EATIRRLVVNQMVIYLQRLQTIRNPYELPPAESVEAFDKSFPYKLTPDQVRAVEDITIDL 377

Query: 283 TERETPMDRLICGDVGFGKTEVALRAIRCVVSAKKQAMVLAPTIVLAKQHFDVISERFAV 342
           + R+ PMDRL+ GDVGFGKTEVA+RAI  V S+     ++APT VLAKQH   ++ RF  
Sbjct: 378 S-RDAPMDRLVIGDVGFGKTEVAMRAIFHVASSGGGVFMMAPTTVLAKQHAANLAARFRP 436

Query: 343 YPDIKVGLLSRFQTKAEKEEHLESIKSGELDIIVGTHSLLG-NRVVYSNLGLLVVDEEQR 401
              I V L++R   K+   E  E  K G + IIVGTH L+  +   Y  L LLV+DEEQR
Sbjct: 437 L-GINVELVTRHVVKSRHTEIFEKFKEGTVQIIVGTHKLVNLDSEYYRKLKLLVIDEEQR 495

Query: 402 FGVKQKEKIATFKTSVDVLTLSATPIPRTLYLALTGFRDASLITTPPPERVPIKTHLSSF 461
           FGVK K++I+  K  VDVLTLSATPIPRTL++A++GFRDASL+ TPPPER PI T L+  
Sbjct: 496 FGVKHKDQISALKAEVDVLTLSATPIPRTLHMAMSGFRDASLVQTPPPERRPINTILAPQ 555

Query: 462 SKEKVISAIKYELDRGGQVFYVLPRIKGLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDT 521
           +   +  AI++EL+R GQV+Y++PR+  ++E  E L   FP++ I   HG+    Q++D 
Sbjct: 556 NDADITRAIEHELNRNGQVYYIVPRVSMMKEASERLNRLFPELRIMTCHGQMDGDQIDDA 615

Query: 522 MEKFALGEIKILISTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAY 581
           ME F+ G   +LI+T IVESGLDI N NTII+++           LRGRVGRA ++AYAY
Sbjct: 616 MEAFSSGTADVLIATTIVESGLDIPNCNTIIIEN-----------LRGRVGRAGRQAYAY 664

Query: 582 LLY-PDKNLLSDQALERLSALEECRELGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGI 640
           + Y  D++ L+  A ERL+ALEEC  LG+GF+L+ERDMGIRG GT+FGE+Q+GDV NVG 
Sbjct: 665 MFYSSDESELTPAAQERLAALEECCGLGEGFRLSERDMGIRGVGTMFGEKQSGDVDNVGA 724

Query: 641 DLFFEMLFESLSKVEEHRVVAVPYHSVQV-----DININPHLPSEYINHLENPMEIINEA 695
           DL+ E+L++ L +++  R+  +    V+V     +  I P     YI   +   E+    
Sbjct: 725 DLYLELLYKQLQRIDNLRIKTIAASDVRVETAGYEFGITPF----YIATTQANDEVKAAI 780

Query: 696 ERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLLKKLYLRRM---AADIGINRI 745
           + +   +    M   + L+  +G+   P E  L  L+ R M   A D+GI  I
Sbjct: 781 DSITVHEHIHAM--LKLLQDTFGE---PDEFSLSCLFAREMQILAGDLGIKAI 828


>Q7V1M5_PROMP (tr|Q7V1M5) Transcriptional-repair coupling factor OS=Prochlorococcus
            marinus subsp. pastoris (strain CCMP1986 / MED4)
            GN=PMM0839 PE=4 SV=1
          Length = 1171

 Score =  503 bits (1295), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 276/656 (42%), Positives = 410/656 (62%), Gaps = 22/656 (3%)

Query: 133  KVDPYTLRNGDYVVHKKVGIGMFIGI-KMDVPKNSAEPTEYVFIEYADGMAKLPVKQ-SS 190
            K++P     GDY+VHK  GIG F+ I K+++   + E  +Y+ I Y DG   +   Q  S
Sbjct: 491  KINP-----GDYIVHKNHGIGQFLKIEKINI---TGESRDYLVIRYLDGKISVAADQLGS 542

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
               YR    +   KP+ ++KL  T  W K K K +  I+K+ +D+++LY  R K +   +
Sbjct: 543  INRYR---SSGKIKPR-INKLGGTE-WLKIKDKNRKIIKKVALDILKLYAKREKLKGHIF 597

Query: 251  PK-SPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
            P+  P   E    FPY+ TPDQ  A  +V+ D+ E + PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 598  PEDGPWQKELEESFPYQATPDQITAVKEVKIDM-ESDKPMDRLVCGDVGFGKTEVAVRAI 656

Query: 310  RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKS 369
               +++ KQ ++LAPT +LA+QH+     RF+ YP IKV LL+RF+T  EK++    +K+
Sbjct: 657  FKAITSGKQVILLAPTTILAQQHWRTFYNRFSPYP-IKVSLLNRFKTNTEKKDIYNGLKN 715

Query: 370  GELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPR 429
             ++D++V TH +LG  +   NLGLLV+DEEQRFGV+QKEKI   KT++DVLTLSATPIPR
Sbjct: 716  NKIDLVVATHQILGKEIEIKNLGLLVIDEEQRFGVRQKEKIKNIKTNIDVLTLSATPIPR 775

Query: 430  TLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKG 489
            TLY++L+G R  SL+ TPPP R  IKT+LS    + + +AI  ELDRGGQ+FYVLPRI  
Sbjct: 776  TLYMSLSGLRQMSLLNTPPPSRRSIKTYLSEIDMDVIRTAISQELDRGGQIFYVLPRISD 835

Query: 490  LEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNAN 549
            +++ +  L+  F D++  + HG+     LE+ M  F  GE+ ++I T I+ESGLDI   N
Sbjct: 836  IDQAVNKLKNMFKDLKYIVAHGQMNEIDLENAMIAFNNGEVDLMICTTIIESGLDIPRVN 895

Query: 550  TIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQ 609
            TI+++D  +FGL+QLYQLRGRVGR+  +A+A+L YP+ N +++ + +RL A+++  ELG 
Sbjct: 896  TIVIEDSHKFGLSQLYQLRGRVGRSGIQAHAWLFYPNINKINEASKQRLKAIKDFSELGS 955

Query: 610  GFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQV 669
            G+QLA +DM IRG G++ GE+Q+G V  +G DL+ EML E++S++    V  V  +  QV
Sbjct: 956  GYQLAMKDMEIRGVGSLLGEEQSGKVNAIGYDLYIEMLHEAISEINGQEVPEV--NDTQV 1013

Query: 670  DININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLLK 729
            D+ IN  +P  +I + E  ++    A          L +   +   +YG  P+P+E L+ 
Sbjct: 1014 DLPINAFIPGTWILNREEKLDAYKYATECTNHK--ELTELATDWTNRYGVLPKPVESLIL 1071

Query: 730  KLYLRRMAADIGINRIYSSGKTVFMKANITKKVFKMMTDSMTSDIYRNSLVLEGDQ 785
             + L+ +A   G N+I      V ++  +    FK++   + S+I       E DQ
Sbjct: 1072 LMKLKLLAKKCGFNKIKLKKPNVIIETRLKNSTFKLIKKGLPSNIQSKFNYEEDDQ 1127


>K8ELQ7_9CHLO (tr|K8ELQ7) Transcription-repair coupling factor OS=Bathycoccus
           prasinos GN=Bathy12g02060 PE=4 SV=1
          Length = 1143

 Score =  502 bits (1292), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 268/558 (48%), Positives = 373/558 (66%), Gaps = 16/558 (2%)

Query: 119 LKGERVGKDGNFSYKVDPYTLRNGDYVVHKKVGIGMFIGIKM------DVPKNSAEPTEY 172
           L+G      G  +  +DP+ L  G+YVVH+K GIG F+G++       +  +N      +
Sbjct: 396 LEGYNDSTHGLANNSIDPFKLVIGEYVVHRKYGIGKFLGMRSINHEDEETGRNEGTRKVF 455

Query: 173 VFIEYADGMAKLPVKQSSKMLYRYCLPNENKKPKALSKLNDT-SVWEKRKTKGKVAIQKM 231
           +FI++AD  AK+  K++S  LYRY  P    KP  LSKL D    WE ++ + +  I+ +
Sbjct: 456 LFIQFADDTAKIEPKKASMQLYRYASPGAQVKPPRLSKLYDKLGSWEAKEAQMQKQIRDL 515

Query: 232 VVDLMELYLHRLKQRRPPY--PKSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPM 289
           VV  M +YL RL+  R PY   K    A+F   F +E TPDQK A  D+ +D+T R+TPM
Sbjct: 516 VVHQMCVYLQRLQCVRAPYRISKPDEEAKFAEGFRFELTPDQKMAIEDINEDMT-RDTPM 574

Query: 290 DRLICGDVGFGKTEVALRAIRCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVG 349
           DR+I GDVGFGKTEVA RAI     + K + +LAPT VLAKQH   ++ RF  +  ++V 
Sbjct: 575 DRIIVGDVGFGKTEVAFRAISRACFSGKNSFILAPTTVLAKQHAANVAARFR-HLGVEVN 633

Query: 350 LLSR-FQTKAEKE--EHLESIKSGELDIIVGTHSLLG-NRVVYSNLGLLVVDEEQRFGVK 405
           LL+R  +TK +KE  E      SG   IIVGTH LL  +  VY NL LL++DEEQRFGV+
Sbjct: 634 LLTRHVKTKDQKEILEKFSQKDSGRAQIIVGTHGLLNLSTEVYDNLDLLIIDEEQRFGVR 693

Query: 406 QKEKIATFKTSVDVLTLSATPIPRTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEK 465
            K++I+  K +VDVLTLSATPIPRTL++A++GFRDASL+ TPPPER PI+T+L    ++K
Sbjct: 694 HKDQISALKATVDVLTLSATPIPRTLHMAISGFRDASLVQTPPPERRPIRTNLLPMDEDK 753

Query: 466 VISAIKYELDRGGQVFYVLPRIKGLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKF 525
           +  AI+YE++RGGQ++Y++PRI  + +  + L    P++ +   HG+     L+  M++F
Sbjct: 754 IREAIEYEINRGGQIYYIVPRIMMMGDSRQRLFGILPNLRVIEAHGQMDGDTLDAVMDEF 813

Query: 526 ALGEIKILISTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYP 585
           + GE  +L+ T IVESGLDI N NTII+++VQ FGLA LYQLRGRVGRAD++A+A++ Y 
Sbjct: 814 SNGEADVLLCTTIVESGLDIPNCNTIIIEEVQSFGLASLYQLRGRVGRADRQAHAWMFYG 873

Query: 586 -DKNLLSDQALERLSALEECRELGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFF 644
            D   L+++A ERL ALEE   LG+GF+LAERDM IRG GT+FGE+Q+G+V +VG DL+ 
Sbjct: 874 LDPESLNEKAKERLLALEESCGLGEGFKLAERDMSIRGVGTLFGEKQSGEVDSVGADLYL 933

Query: 645 EMLFESLSKVEEHRVVAV 662
           E+L+  L +VE  R+ A 
Sbjct: 934 ELLYSQLQRVEMMRLKAC 951


>M8B2D2_AEGTA (tr|M8B2D2) Transcription-repair-coupling factor OS=Aegilops
           tauschii GN=F775_06272 PE=4 SV=1
          Length = 480

 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 253/443 (57%), Positives = 316/443 (71%), Gaps = 56/443 (12%)

Query: 75  ISLLNERIR---RDHGKREVSRTVMDKKEAEKYIQLVKEQQQRGLQKLKG-------ER- 123
           IS L  R+R   R  G    + + MD  +A+ Y+ +++EQQ+ GL++L+        ER 
Sbjct: 59  ISPLQHRLRALVRRRGVSSAATSPMDPAQADAYLHMIREQQRLGLRQLRRHSAEPEYERD 118

Query: 124 VGKDG-----------------NFSYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNS 166
           VG +G                 +  ++VDP  L  G+YVVHKKVG+G F+ I      + 
Sbjct: 119 VGSNGEDEEEGAGRRKGMAARSSLGHRVDPRELEPGEYVVHKKVGVGKFVCI------SG 172

Query: 167 AEPTEYVFIEYADGMAKLPVKQSSKMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKV 226
            +  +YVFI                       P+E K+P+ LSKLND S WEKR+ KGK+
Sbjct: 173 EDGEDYVFIH----------------------PHEKKRPRNLSKLNDPSTWEKRRLKGKL 210

Query: 227 AIQKMVVDLMELYLHRLKQRRPPYPKSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERE 286
           A+QKMVV+LMELYL R++QRRPPY K  AM +F ++FPYEPTPDQ QAFID+E DLTERE
Sbjct: 211 AVQKMVVNLMELYLQRMRQRRPPYRKPEAMDQFASEFPYEPTPDQNQAFIDIENDLTERE 270

Query: 287 TPMDRLICGDVGFGKTEVALRAIRCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDI 346
           TPMDRLICGDVGFGKTEVA+RAI  VVS   QAMVLAPT++LA QH+DV+SERF+ YPDI
Sbjct: 271 TPMDRLICGDVGFGKTEVAMRAIFIVVSTGYQAMVLAPTVILANQHYDVMSERFSNYPDI 330

Query: 347 KVGLLSRFQTKAEKEEHLESIKSGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQ 406
           KV + S  Q+K EK+E +  I +G L IIVGTH+LL  R+ Y+NLGLLVVDEEQ+FGV+Q
Sbjct: 331 KVAIFSGAQSKDEKDELITKITNGHLQIIVGTHALLTERMAYNNLGLLVVDEEQKFGVQQ 390

Query: 407 KEKIATFKTSVDVLTLSATPIPRTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKV 466
           KEKIA+FK S+DVLTLSATPIPRTLYLALTGFRDASL++TPPPERV +KT++S+FS+E  
Sbjct: 391 KEKIASFKASIDVLTLSATPIPRTLYLALTGFRDASLMSTPPPERVAVKTYVSAFSRESA 450

Query: 467 ISAIKYELDRGGQVFYVLPRIKG 489
           +SAIK EL RGGQVFYV+PRIKG
Sbjct: 451 LSAIKLELKRGGQVFYVVPRIKG 473


>M7ZWH7_TRIUA (tr|M7ZWH7) Transcription-repair-coupling factor OS=Triticum urartu
           GN=TRIUR3_17794 PE=4 SV=1
          Length = 693

 Score =  483 bits (1244), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 245/418 (58%), Positives = 304/418 (72%), Gaps = 53/418 (12%)

Query: 96  MDKKEAEKYIQLVKEQQQRGLQKLKG-------ER-VGKD-----------------GNF 130
           MD  +AE Y+ +++EQQ+ GL++L+        ER VG +                  + 
Sbjct: 1   MDPAQAEAYLHMIREQQRLGLRQLRRHAAEPEYERDVGSNGEDEEEGGGRRKGMAARSSL 60

Query: 131 SYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS 190
            ++VDP  L  G+YVVHKKVG+G F+ I      +  +  +YVFI               
Sbjct: 61  GHRVDPRELEPGEYVVHKKVGVGKFVCI------SGEDGEDYVFIH-------------- 100

Query: 191 KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
                   P+E K+P+ LSKLND S WEKR+ KGK+A+QKMVV+LMELYL R++QRRPPY
Sbjct: 101 --------PHEKKRPRNLSKLNDPSTWEKRRLKGKLAVQKMVVNLMELYLQRMRQRRPPY 152

Query: 251 PKSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAIR 310
            K  AM +F ++FPYEPTPDQ QAFID+E DLTERETPMDRLICGDVGFGKTEVA+RAI 
Sbjct: 153 RKPEAMDQFASEFPYEPTPDQNQAFIDIENDLTERETPMDRLICGDVGFGKTEVAMRAIF 212

Query: 311 CVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKSG 370
            VVS   QAMVLAPT++LA QH+DV+SERF+ YPDIKV + S  Q+K EK+E +  I +G
Sbjct: 213 IVVSTGYQAMVLAPTVILANQHYDVMSERFSNYPDIKVAIFSGAQSKDEKDELITKITNG 272

Query: 371 ELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPRT 430
            L IIVGTH+LL  R+ Y+NLGLLVVDEEQ+FGV+QKEKIA+FK S+DVLTLSATPIPRT
Sbjct: 273 HLQIIVGTHALLTERMAYNNLGLLVVDEEQKFGVQQKEKIASFKASIDVLTLSATPIPRT 332

Query: 431 LYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIK 488
           LYLALTGFRDASL++TPPPERV +KT++S+FS+E  +SAIK EL RGGQVFYV+PRIK
Sbjct: 333 LYLALTGFRDASLMSTPPPERVAVKTYVSAFSRESALSAIKLELKRGGQVFYVVPRIK 390



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 66/112 (58%), Positives = 90/112 (80%)

Query: 488 KGLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQN 547
           + +E+V++FL++S PDV +AI HGK+ SK ++  MEKF+ GEIKILI T+I+ESG+DI N
Sbjct: 581 QSIEDVLQFLKDSLPDVPMAIAHGKKVSKNIQLAMEKFSCGEIKILICTHIIESGIDIPN 640

Query: 548 ANTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLS 599
           ANT+IVQ  + FGLAQLYQLRGRVGR+ +E + YL Y DK+LLS  A+++ S
Sbjct: 641 ANTMIVQYAELFGLAQLYQLRGRVGRSGREGFTYLFYTDKSLLSRIAMKQHS 692


>L8MUF7_9CYAN (tr|L8MUF7) Transcription-repair coupling factor OS=Pseudanabaena
            biceps PCC 7429 GN=Pse7429DRAFT_4431 PE=4 SV=1
          Length = 1033

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 265/604 (43%), Positives = 373/604 (61%), Gaps = 13/604 (2%)

Query: 129  NFSYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQ 188
            N +  V+P  +  GDYVVH+K GIG F   +    K   +P  +  +E+ADG   + + Q
Sbjct: 435  NTAKSVNPDEINVGDYVVHRKYGIGKFTRFETIEVKGEKQP--HYIVEFADGKTAVAIAQ 492

Query: 189  SS-KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRR 247
             + K+L RY   + + KP  L+ + +T  W+    K +  I K+  DL++LY+ R     
Sbjct: 493  ENEKILSRY--RSASNKPPKLNSIANTKAWDNALGKCQKEIYKLARDLLQLYVRRANLVG 550

Query: 248  PPYP-KSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVAL 306
              +P  +    E    FPY+ TPDQ +A  DV++D+ E + PMDRL+CGDVGFGKTEVA+
Sbjct: 551  YAFPPDTDWQQEMEDSFPYQLTPDQVKAVQDVKQDM-ESDRPMDRLVCGDVGFGKTEVAV 609

Query: 307  RAIRCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLES 366
            RAI   V A KQ  +LAPT +LA+QHF  +  RFA YP   V +++RF+   E+++ L+ 
Sbjct: 610  RAIFKAVCAGKQVALLAPTTILAQQHFHTLQTRFAAYP-FTVEIVNRFRPAKERKQVLQQ 668

Query: 367  IKSGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATP 426
            +  G++ +IVGTH LL   V + +LGLLV+DEEQRFG  QKEKI T K  VD+LTLSATP
Sbjct: 669  VADGKVQVIVGTHQLLSKDVEFHDLGLLVIDEEQRFGTLQKEKIKTMKGDVDLLTLSATP 728

Query: 427  IPRTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPR 486
            IPRTLY AL+G R+ S+I TPPP R  I+THL ++    V +AI++ELDRGGQVFYV+PR
Sbjct: 729  IPRTLYAALSGVREMSVIATPPPSRRSIQTHLFAYDASLVKTAIRHELDRGGQVFYVVPR 788

Query: 487  IKGLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQ 546
            I+G++ +   L+   P+V +AI HG+    +LE  M  F   E  IL+ T I+ESGLDI 
Sbjct: 789  IEGIDAIAVSLQAMLPNVRLAIAHGQMQESELESAMVAFNNNEADILLCTTIIESGLDIP 848

Query: 547  NANTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRE 606
              NTI+++D  + GLAQLYQLRGRVGRA  +A+AYLLYP    L+D A +RL A++E  +
Sbjct: 849  RVNTIVIEDAHKLGLAQLYQLRGRVGRAGIQAHAYLLYPPNLELTDAAKKRLDAIQEFSQ 908

Query: 607  LGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHS 666
            LG G+QLA RDM IRG G + GE+Q+G    +G  L+ ++L E ++++    +  V    
Sbjct: 909  LGSGYQLAMRDMEIRGLGDLLGEEQSGQADVIGFALYMDLLQEYINELRGKILPEVADTE 968

Query: 667  VQVDININPHLPSEYINHLENPMEIINEAERVAEK-DTWSLMQFTENLRRQYGKEPRPME 725
            +Q+   +   +P  YI   E  +       +V  K +   L    ENL   YG  P   +
Sbjct: 969  LQLP-RLVAFIPDTYIEDNETKINAYLTLAKVKSKEEILKLAAIWENL---YGALPEETQ 1024

Query: 726  VLLK 729
            VLL+
Sbjct: 1025 VLLR 1028


>R7I1W5_9CLOT (tr|R7I1W5) Transcription-repair coupling factor OS=Clostridium sp.
            CAG:411 GN=BN648_00233 PE=4 SV=1
          Length = 1178

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 268/629 (42%), Positives = 391/629 (62%), Gaps = 23/629 (3%)

Query: 139  LRNGDYVVHKKVGIGMFIGI-KMDVPKNSAEPTEYVFIEYADGMAKLPVKQSSKMLYRYC 197
            L  GDYV+H+  G+G++ GI K+ V K   +   YV IEYADG     +    ++L +Y 
Sbjct: 504  LNIGDYVIHENHGVGIYKGIEKITVDKTVKD---YVKIEYADGGNLYVLATGLEVLQKYS 560

Query: 198  LPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY---PKSP 254
               + KKPK ++KLN ++ W+K K++   +++++  +L+ELY  R  Q +  Y     S 
Sbjct: 561  -SGDGKKPK-MNKLN-SAEWKKTKSRVHSSVRRVAKELVELYAKR--QEKIGYRFDNDSL 615

Query: 255  AMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAIRCVVS 314
               EF   FPYE T DQ  A    ++D+ E    MDRLICGDVGFGKTE+A+RA    V 
Sbjct: 616  WQREFEEMFPYEETDDQVSAIEATKRDM-ESTKIMDRLICGDVGFGKTEIAIRAAFKAVD 674

Query: 315  AKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKSGELDI 374
              KQ   L PT +LA+QH++   +R   +P IK+G+LSRF+T A++++ LE++K G+LDI
Sbjct: 675  NGKQVAFLVPTTILAQQHYNTFVQRMKEFP-IKIGMLSRFRTPAQQKKDLEALKKGQLDI 733

Query: 375  IVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPRTLYLA 434
            ++GTH LL   V Y NLGLL+VDEEQRFGV  KEKI   K +VDVLTLSATPIPRTL+++
Sbjct: 734  VIGTHRLLSKDVKYHNLGLLIVDEEQRFGVTHKEKIKMLKENVDVLTLSATPIPRTLHMS 793

Query: 435  LTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEVM 494
            L G RD S++  PP +R+PI+T +   + E V  AI  EL R GQVFYV  R+K +EEV 
Sbjct: 794  LIGIRDMSVLEEPPVDRMPIQTFIVEQNDEIVREAINRELARNGQVFYVYNRVKNIEEVA 853

Query: 495  EFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNANTIIVQ 554
              + E  P   +   HG+  S++LE  M +F  GE+ +L+ST IVE+GLDI N NT++V 
Sbjct: 854  AHIAELVPHAAVGCAHGQMSSRELEKIMYQFIQGELDVLVSTTIVETGLDISNVNTMLVH 913

Query: 555  DVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQGFQLA 614
            D  Q GL+QLYQLRGRVGR+++ AYA+L+Y    +L + A +RL A+ E  ELG GF++A
Sbjct: 914  DADQLGLSQLYQLRGRVGRSNRTAYAFLMYRRNKVLKEVAEKRLQAMREFTELGSGFKIA 973

Query: 615  ERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQVDININ 674
              D+ IRG G++ GEQQ G +  +G DL+ +ML E++ + +   V A       VD+N++
Sbjct: 974  MTDLEIRGAGSLLGEQQHGHMEAIGYDLYCKMLTEAVREYKGEEVEAS--FDTTVDVNVD 1031

Query: 675  PHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLLKKLYLR 734
             ++P+ YI      +E+      +  +D W  MQ  E L  ++G  P+ ++ LL  + L+
Sbjct: 1032 AYIPATYIRSEYQKLEMYKRIAGIENRDEWMDMQ--EELVDRFGDMPKAVQNLLNIVLLK 1089

Query: 735  RMAADIGINRIYSSGK-----TVFMKANI 758
             MA  + + ++    +     T+F +A I
Sbjct: 1090 SMAHQVYVEQVKQKKEKELEFTMFAQAKI 1118


>B9E8U8_MACCJ (tr|B9E8U8) Transcription-repair coupling factor OS=Macrococcus
            caseolyticus (strain JCSC5402) GN=mfd PE=4 SV=1
          Length = 1166

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 273/666 (40%), Positives = 422/666 (63%), Gaps = 30/666 (4%)

Query: 104  YIQLV--KEQQQRGLQKLKGERVGKDGNFSYKVDPYTLRN-GDYVVHKKVGIGMFIGIKM 160
            Y++LV   E++   L+K K +R  K  + + K+  Y   N GDYVVH   G+G ++G++ 
Sbjct: 457  YMKLVVITERELFKLRKEKPKRTQKKLSNAEKIKSYQELNIGDYVVHTHHGVGRYLGVET 516

Query: 161  DVPKNSAEPTEYVFIEYADGMAKL--PVKQSSKMLYRYCLPNENKKPKALSKLNDTSVWE 218
             +     +  +Y+ I+Y  G  +L  PV Q S++  +  + +E+K PK L+KL  T  W+
Sbjct: 517  LLVNKLHK--DYIKIQYK-GTDQLFVPVDQMSQV--QKFVGSEDKDPK-LNKLGGTE-WK 569

Query: 219  KRKTKGKVAIQKMVVDLMELYLHRLKQRRPPYPKSPAMAE---FTAQFPYEPTPDQKQAF 275
            K K + +  ++ +  +L++LY  R  +R   Y   P   E   F   FPYEPT DQKQ+ 
Sbjct: 570  KTKARVQKNVEDIAEELLKLYQER--ERIEGYQFGPDTEEQENFEMDFPYEPTHDQKQSL 627

Query: 276  IDVEKDLTERETPMDRLICGDVGFGKTEVALRAIRCVVSAKKQAMVLAPTIVLAKQHFDV 335
            I+++ D+ E+  PMDRL+CGDVG+GKTEVA+RA    V   KQ   L PT +LA+QH++ 
Sbjct: 628  IEIKGDM-EKSKPMDRLLCGDVGYGKTEVAIRAAFKAVMDGKQVAFLVPTTILAQQHYET 686

Query: 336  ISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKSGELDIIVGTHSLLGNRVVYSNLGLLV 395
            I ER   YP ++V ++SRF+T  E  E  + +KSG +DI+VGTH LLG  +VY +LGLL+
Sbjct: 687  IIERMQDYP-VEVQMMSRFRTTKEVNETKKGLKSGFVDIVVGTHKLLGKDIVYKDLGLLI 745

Query: 396  VDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPRTLYLALTGFRDASLITTPPPERVPIK 455
            VDEEQRFGV  KEKI   KT+VDVLTL+ATPIPRTL+++L G RD S+I TPP  R P++
Sbjct: 746  VDEEQRFGVTHKEKIKALKTNVDVLTLTATPIPRTLHMSLLGVRDLSVIETPPENRFPVQ 805

Query: 456  THLSSFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEVMEFLEESFPDVEIAIGHGKQYS 515
            T++  +    +  A++ EL R GQVFY+  R+  + +  E LE   PD  IA+ HG+   
Sbjct: 806  TYVLEYQHNFIKEAMERELSRNGQVFYLYNRVATIYQKAEQLEMMMPDARIAVAHGQMSE 865

Query: 516  KQLEDTMEKFALGEIKILISTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 575
            ++LE+TM  F  GE  IL++T I+E+G+D+ NANT+I++D  +FGL+QLYQLRGRVGR++
Sbjct: 866  RELEETMLGFINGEYDILVTTTIIETGVDVPNANTLIIEDADRFGLSQLYQLRGRVGRSN 925

Query: 576  KEAYAYLLYPDKNLLSDQALERLSALEECRELGQGFQLAERDMGIRGFGTIFGEQQTGDV 635
            + +YAY L+    +L++ A +RL A++E  ELG GF++A RD+ IRG G + G+QQ G +
Sbjct: 926  RISYAYFLHAPNKVLTEVAEQRLQAIKEFTELGSGFKIAMRDLNIRGAGNLLGKQQHGFI 985

Query: 636  GNVGIDLFFEMLFESLSKVEEHRVV----AVPYHSVQVDININPHLPSEYINHLENPMEI 691
             +VG DL+ EML ++   V E R +     VP   +++D+ I+ ++P+EYI   +  +E 
Sbjct: 986  DSVGYDLYSEMLQQA---VNEKRGIKEEETVP--QLEIDVEIDAYIPAEYIREEQAKIEF 1040

Query: 692  INEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLLKKLYLRRMAADIGINRIYSSGKT 751
              +   V  +    L+   + +  +YG+ P  ++ L+K + ++  A   GI ++  +GK+
Sbjct: 1041 YKKLRSVTTE--QELIDVQDEMTDRYGEYPEAVDHLMKIVEIKVNALSFGIVQVRDTGKS 1098

Query: 752  VFMKAN 757
            + ++A+
Sbjct: 1099 IELEAS 1104


>K2DWK7_9BACT (tr|K2DWK7) Uncharacterized protein OS=uncultured bacterium
            GN=ACD_20C00398G0001 PE=4 SV=1
          Length = 1183

 Score =  476 bits (1225), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 269/629 (42%), Positives = 392/629 (62%), Gaps = 18/629 (2%)

Query: 121  GERVGKDGNFSYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADG 180
             +RV K  N  + +    L+  DYVVH + GIG FIG+     K   +  +Y+ IEY+ G
Sbjct: 484  AKRVSKRENLDFLISINDLQPNDYVVHNRHGIGKFIGLSKQ--KIDEQEKDYLTIEYS-G 540

Query: 181  MAKL--PVKQSSKMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMEL 238
              +L  P +Q + ML RY        PK LSK+     W   K K K AI+ +  DL+ L
Sbjct: 541  TDRLHMPAEQIN-MLSRY-RGAAGAAPK-LSKMGGAE-WTGVKKKVKNAIRDIAQDLLNL 596

Query: 239  YLHRLKQRRPPY-PKSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDV 297
            Y  R K     +   SP   E    FPY  TPDQ QA I+ + D+ E E PMDRLICGDV
Sbjct: 597  YAKRAKTNGFIFESDSPWQIEMEDAFPYTETPDQLQAIINTKSDM-ESEKPMDRLICGDV 655

Query: 298  GFGKTEVALRAIRCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTK 357
            GFGKTEVA+RAI   + + KQA +LAPT +LA+QH+    +RF  YP +K+ LLSRF+T 
Sbjct: 656  GFGKTEVAIRAIFKAILSGKQAALLAPTTILAQQHYQTFVDRFKPYP-VKIELLSRFRTP 714

Query: 358  AEKEEHLESIKSGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSV 417
             +++E ++ + +GE D+++GTH LL   + + N+GLLV+DEE RFGV  KEK+   +  V
Sbjct: 715  KQQKEAIKKLLTGECDLVIGTHRLLQKDIQFKNIGLLVIDEEHRFGVAHKEKLKHLRAEV 774

Query: 418  DVLTLSATPIPRTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRG 477
            DV+TLSATPIPRTLY+AL+G R+ SLI TPP  R PIKT++  ++   V +AI +EL+R 
Sbjct: 775  DVMTLSATPIPRTLYMALSGVREMSLINTPPINRAPIKTYVGEYNNSMVRTAISHELERE 834

Query: 478  GQVFYVLPRIKGLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTN 537
            GQ++++  R++ + +V + L+E  P   IA+ HG+   K+LE  M +F+  +  IL+ T 
Sbjct: 835  GQIYFLHNRVQSIYKVAKDLQELIPAARIAVAHGQMQEKELEKAMYEFSTHQYDILVCTT 894

Query: 538  IVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALER 597
            I+ESGLDI N NTIIV D  +FGLAQLYQ+RGRVGR++ +AYAY  Y    LL+ +A +R
Sbjct: 895  IIESGLDIPNVNTIIVDDSDKFGLAQLYQIRGRVGRSETQAYAYCFYRPNKLLTPEAKDR 954

Query: 598  LSALEECRELGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEH 657
            L A+++   LG G+Q+A RD+ IRG G I G  Q G + +VG DL+  +L ES+ +++  
Sbjct: 955  LKAIKDFTTLGSGYQIALRDLEIRGVGNILGANQHGHMLSVGFDLYCSLLDESIRELQNQ 1014

Query: 658  RVVAVPYHSVQVDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTEN-LRRQ 716
            +V         VDINI  ++P E++   +  M    E +R+A+ ++   ++  ++  + +
Sbjct: 1015 KVDK--KEPPIVDINITAYIPDEWVGDKDQKM---IEYKRLADVESLKELEIIQDEWKDR 1069

Query: 717  YGKEPRPMEVLLKKLYLRRMAADIGINRI 745
            +G  P  ++ L K + +R +AA+IGIN I
Sbjct: 1070 FGDIPVEVQRLFKIIKIRLIAAEIGINLI 1098


>F8F0Q4_SPICH (tr|F8F0Q4) Transcription-repair coupling factor OS=Spirochaeta
            caldaria (strain ATCC 51460 / DSM 7334 / H1)
            GN=Spica_1618 PE=4 SV=1
          Length = 1133

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 261/647 (40%), Positives = 403/647 (62%), Gaps = 20/647 (3%)

Query: 131  SYKVDPYT-LRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADG-MAKLPVKQ 188
            S  +D +  L  GDYVVH   GIG+F GI+    K      +Y+ +EYAD     +P++Q
Sbjct: 460  SAAIDTFVELNPGDYVVHVNYGIGLFKGIER--IKALGHERDYIKLEYADEEYVFVPIEQ 517

Query: 189  SSKMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRP 248
             + ++ RY + NE   P+ L KL   S WE RK + K +++ +   L++LY  R   +  
Sbjct: 518  VN-LVQRY-IGNEGNAPR-LDKLGSKS-WENRKNRVKKSVEDIAQRLIDLYSKRKAVQGY 573

Query: 249  PYPK-SPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALR 307
             +PK +     F A FPYE T DQ +   ++++D+ E   PMDRL+CGDVG+GKTEVA+R
Sbjct: 574  AFPKDTEWQTAFEAAFPYEETEDQLRCVEEIKRDM-ESPFPMDRLVCGDVGYGKTEVAVR 632

Query: 308  AIRCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESI 367
            A    V   KQ   LAPT +LA+QH++   ERFA +P +++G+LSRF  +AE  + LE++
Sbjct: 633  ACFKAVMGGKQVAFLAPTTILAEQHYENFQERFAQFP-VRLGMLSRFVDRAEARKTLEAV 691

Query: 368  KSGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPI 427
            K GE+DI+VGTH ++   VV+ +LGLLV+DEEQRFGVK KE++   KT++D LTLSATPI
Sbjct: 692  KKGEIDILVGTHRIIQKDVVFKDLGLLVIDEEQRFGVKDKERLKELKTNIDCLTLSATPI 751

Query: 428  PRTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRI 487
            PRTL+++L   RD SL+TTPP  R P++T +  F+++++ +AI+ E++RGGQVFY+  R+
Sbjct: 752  PRTLHMSLLKIRDMSLLTTPPYNRHPVETTIDEFNEDRIAAAIRREVERGGQVFYLHNRV 811

Query: 488  KGLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQN 547
            + L+EV   LE   P++ I I HG+    +LED M +F  G   +L+ST I+E+G+DI N
Sbjct: 812  ESLDEVRRMLERIVPEMLIDIAHGQMDPHELEDVMHRFIHGGFHVLVSTTIIENGIDIPN 871

Query: 548  ANTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECREL 607
             NTII+     +G++QLYQLRGRVGR+D+ AYAYL YP    LS+ A++RL  + +  EL
Sbjct: 872  VNTIIIDRADMYGVSQLYQLRGRVGRSDRVAYAYLFYPKDKALSELAMKRLQVISDFTEL 931

Query: 608  GQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSV 667
            G GF++A +DM IRG G + G +Q+GD+ +VG D++  +L E++ ++++        +  
Sbjct: 932  GSGFKIAMKDMEIRGAGNLLGREQSGDIYSVGFDMYLRLLDEAVQRLQDANYEV--ENET 989

Query: 668  QVDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVL 727
             +++  +  +P  YI+  +  ME+  +   +  +D   L Q    L  ++G  P  ++ L
Sbjct: 990  YLELEYSGFIPDSYIDSAQEKMEVYKKIAAIQSRD--ELEQVYAELLDRFGPLPDVVQSL 1047

Query: 728  LKKLYLRRMAADIGINRIYSSGKTV---FMKANITK--KVFKMMTDS 769
            L    +R +  D+ I  +   G  V   F K +  K  ++ ++M +S
Sbjct: 1048 LSLAEIRIICKDLSIASLKERGGMVRIEFAKVSRVKVDRLIRLMKES 1094


>L0EKE1_THECK (tr|L0EKE1) Transcription-repair coupling factor Mfd (Precursor)
            OS=Thermobacillus composti (strain DSM 18247 / JCM 13945
            / KWC4) GN=Theco_3716 PE=4 SV=1
          Length = 1176

 Score =  473 bits (1218), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 269/652 (41%), Positives = 401/652 (61%), Gaps = 22/652 (3%)

Query: 111  QQQRGLQKLKGERVGKDGNFSYKVDPYT-LRNGDYVVHKKVGIGMFIGIKMDVPKNSAEP 169
            Q+QR     K  RV +  + + ++  YT L+ GDYVVH+  GIG +IGI     +     
Sbjct: 464  QKQR-----KARRVERKIDNAERIKSYTELKVGDYVVHQNHGIGKYIGI--GTLEIGGVH 516

Query: 170  TEYVFIEYADGMAKLPVKQSSKMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQ 229
             +Y+ I YADG  KL V      L +  + +E+K+PK + KL   S W + K K + ++Q
Sbjct: 517  KDYLHILYADG-DKLSVPIDQIDLIQKYVGSEDKEPK-IYKLGG-SEWNRVKNKVRSSVQ 573

Query: 230  KMVVDLMELYLHRLKQRRPPYPK-SPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETP 288
             +  DL+ LY  R       + K +P   EF A FPYE TPDQ +A  ++++D+ E   P
Sbjct: 574  DIAEDLVRLYAERQSTPGHAFQKDTPYQQEFEAMFPYEETPDQLRAIEEIKRDM-ESPRP 632

Query: 289  MDRLICGDVGFGKTEVALRAIRCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKV 348
            MDRL+CGDVG+GKTEVA+RA        KQ  VL PT +LA+QH++   ERFA YP   V
Sbjct: 633  MDRLLCGDVGYGKTEVAIRAAFKAAIEGKQVAVLVPTTILAQQHYETFRERFAGYP-FNV 691

Query: 349  GLLSRFQTKAEKEEHLESIKSGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKE 408
             +LSRF+++ ++ E ++ +K+G +DI++GTH LL   VV+ +LGLL+VDEEQRFGV  KE
Sbjct: 692  QVLSRFRSRKDQTETIKGLKAGTVDIVIGTHRLLSKDVVFKDLGLLIVDEEQRFGVTHKE 751

Query: 409  KIATFKTSVDVLTLSATPIPRTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVIS 468
            K+   KT+VDVLTL+ATPIPRTL++++ G RD SLI TPP  R P++T++  +S   V  
Sbjct: 752  KLKRLKTNVDVLTLTATPIPRTLHMSMLGVRDLSLIETPPENRFPVQTYVVEYSPSLVRE 811

Query: 469  AIKYELDRGGQVFYVLPRIKGLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALG 528
            AI+ EL RGGQV+Y+  R++G+ ++ E +    PD  +A+GHG+   ++LE T+  F  G
Sbjct: 812  AIERELARGGQVYYLYNRVQGIYQMAEQISALVPDARVAVGHGQMSEQELEKTILDFLDG 871

Query: 529  EIKILISTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKN 588
            E  +L+ST+I+E+G+DI N NT+IV D  + GL+QLYQLRGRVGR+++ AYAY  Y    
Sbjct: 872  EFDVLVSTSIIETGVDIPNVNTLIVHDADKMGLSQLYQLRGRVGRSNRIAYAYFTYRRDK 931

Query: 589  LLSDQALERLSALEECRELGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLF 648
            +L++ A +RL ++ E  ELG GF++A RD+ IRG G + G +Q G + +VG D++ +ML 
Sbjct: 932  VLNEAAEKRLQSIREFTELGSGFKIAMRDLAIRGAGNLLGAEQHGFIASVGFDMYSQMLA 991

Query: 649  ESLSKVEEHRVVAVPYHSVQ-----VDININPHLPSEYINHLENPMEIINEAERVAEKDT 703
            E ++K  +  ++  P   V+     +D+ ++ +LPSEYI      +EI  +   + E + 
Sbjct: 992  EEIAK-RKASLLGQPEPEVREVNTAIDLAMDAYLPSEYIYDSMQKIEIYKKVAVIREPEE 1050

Query: 704  WSLMQFTENLRRQYGKEPRPMEVLLKKLYLRRMAADIGINRIYSSGKTVFMK 755
                   E L  ++G  P  +E LL    L+      GI +I   G  + +K
Sbjct: 1051 TD--DLREELVDRFGDPPEAVENLLAVARLKAYGRRCGIEQITQRGDDLILK 1100


>C2D1P6_LACBR (tr|C2D1P6) Transcription-repair coupling factor OS=Lactobacillus
            brevis subsp. gravesensis ATCC 27305 GN=HMPREF0496_1468
            PE=4 SV=1
          Length = 1168

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 268/631 (42%), Positives = 397/631 (62%), Gaps = 19/631 (3%)

Query: 129  NFSYKVDPYT-LRNGDYVVHKKVGIGMFIGIK-MDVPKNSAEPTEYVFIEYADGMAKL-- 184
            N + ++  YT L+ GDYVVH   GIG + G+K M+V     +  +Y+ I Y D  AKL  
Sbjct: 476  NNAERIKSYTDLKPGDYVVHVNHGIGRYEGMKTMEV---DGKHQDYLTISYRDS-AKLFI 531

Query: 185  PVKQSSKMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLK 244
            PV Q + M+ +Y   +E+KKP+ ++KL   S W+K K K    I+ +  DL+ELY  R  
Sbjct: 532  PVTQLN-MIQKYV-SSEDKKPR-INKLG-GSEWQKTKRKVASKIEDIADDLIELYAKRDA 587

Query: 245  QRRPPYPKSPAMA-EFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTE 303
            ++   YP   ++  EF A+FPY  TPDQ ++  +++ D+ E   PMDRL+ GDVG+GKTE
Sbjct: 588  EKGYAYPPDDSLQNEFEARFPYTETPDQLRSADEIKHDM-EHNKPMDRLLVGDVGYGKTE 646

Query: 304  VALRAIRCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEH 363
            VALRA    V   KQ   L PT +LA+QH++ + ERF+ YP I+V +LSRFQT A+ +E 
Sbjct: 647  VALRAAFKAVEVGKQVAFLVPTTILAQQHYETMLERFSDYP-IEVRVLSRFQTTAQIKET 705

Query: 364  LESIKSGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLS 423
            LE +K G +D++VGTH LL   V +SNLGLL++DEEQRFGVK KE+I   +T VDVLTL+
Sbjct: 706  LEGLKKGTVDVVVGTHRLLSKDVKFSNLGLLIIDEEQRFGVKHKERIKEMRTDVDVLTLT 765

Query: 424  ATPIPRTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYV 483
            ATPIPRTL +++ G RD S+I TPP  R PI+T++   +   +  AI+ E+ RGGQVFY+
Sbjct: 766  ATPIPRTLNMSMMGVRDLSVIETPPSNRYPIQTYVIEQNAGTIREAIEREMARGGQVFYL 825

Query: 484  LPRIKGLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGL 543
              R+  +E+ +  L E  PD  IA  HG+    Q+ED +  F  GE  +L++T I+E+G+
Sbjct: 826  HNRVADIEKTVSQLSELVPDARIAYIHGQMTENQMEDILYDFVNGEYDVLVTTTIIETGV 885

Query: 544  DIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEE 603
            DI N NT+ V++    GL+QLYQLRGR+GR+ + AYAY +Y    +L++   +RL A+ +
Sbjct: 886  DIPNVNTLFVENADHMGLSQLYQLRGRIGRSSRVAYAYFMYQPNKVLTEIGEKRLEAIRD 945

Query: 604  CRELGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVP 663
              ELG GF++A RD+ IRG G + G+QQ+G V +VG DL+ +ML +++SK     VV   
Sbjct: 946  FTELGSGFKIAMRDLSIRGAGNLLGKQQSGFVDSVGYDLYTQMLSDAVSKKRGKNVVFKT 1005

Query: 664  YHSVQVDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRP 723
              +V++D  +  +LPS+YI   +  +EI     ++  +D   L + T++L  ++G    P
Sbjct: 1006 DATVELD--LEAYLPSDYIQDSQQKIEIYKRIRQIENQD--QLNEVTDDLIDRFGDYNEP 1061

Query: 724  MEVLLKKLYLRRMAADIGINRIYSSGKTVFM 754
            +  LLK   ++  A    I +++  G  V +
Sbjct: 1062 VANLLKISEMKMYADKAMIEKVHQDGPRVTL 1092


>G8TWA6_SULAD (tr|G8TWA6) Transcription-repair coupling factor (Precursor)
            OS=Sulfobacillus acidophilus (strain ATCC 700253 / DSM
            10332 / NAL) GN=Sulac_0177 PE=4 SV=1
          Length = 1172

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 259/627 (41%), Positives = 392/627 (62%), Gaps = 16/627 (2%)

Query: 139  LRNGDYVVHKKVGIGMFIGIK-MDVPKNSAEPTEYVFIEYADGMAKLPVKQSSKMLYRYC 197
            L+ GDYVVH   GIG F+G++ +D+     +  +Y+ I+YA G   L V      L +  
Sbjct: 495  LKPGDYVVHMTHGIGRFLGVRTLDI---QGQHKDYLHIQYA-GADTLYVPVDQLGLVQKY 550

Query: 198  LPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY-PKSPAM 256
            +  E ++P+ LSK+     W + K K K ++++M  +L++LY  R  +    Y P +P  
Sbjct: 551  VGVEGQEPR-LSKMGGQE-WTRTKEKVKASVREMAEELLKLYAKREAEPGIAYGPDTPWQ 608

Query: 257  AEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAIRCVVSAK 316
            AEF A FPYE TPDQ +A  D+++D+ ER  PMDRL+CGDVG+GKTEVALRA    +   
Sbjct: 609  AEFEAAFPYEETPDQLRAIDDIKRDM-ERARPMDRLLCGDVGYGKTEVALRAAFKAIMGG 667

Query: 317  KQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKSGELDIIV 376
            KQ   L PT +LA+QH+     R A YP + V +LSRF+T  +++E L  +K G++D++V
Sbjct: 668  KQVAFLVPTTLLAEQHYQTAKSRLAGYP-VTVEVLSRFRTPKQQKEILARVKKGQVDLLV 726

Query: 377  GTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPRTLYLALT 436
            GTH LL   V + +LGLL+VDEE RFGV  KE+I   K +VDVLTL+ATPIPRTL++AL 
Sbjct: 727  GTHRLLAKDVQFQDLGLLIVDEEHRFGVAHKERIKALKGNVDVLTLTATPIPRTLHMALV 786

Query: 437  GFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEVMEF 496
            G RD S+I TPP +R+P++T ++ + ++ V  AI+ ELDRGGQVFYV  RI+ ++  +E 
Sbjct: 787  GIRDMSVIETPPEDRLPVETVVAEYDEDLVREAIRRELDRGGQVFYVQNRIRSMDRTVEH 846

Query: 497  LEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNANTIIVQDV 556
            L + FP + +A+ HG+    ++ED M +F   E  IL++TNI+ESGLDI NANT+IV+D 
Sbjct: 847  LMKLFPGIRLAVVHGQMEENRIEDVMARFIEQEYDILVTTNIIESGLDIPNANTLIVEDA 906

Query: 557  QQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQGFQLAER 616
             + GLAQLYQLRGRVGR+ + AYAY  +    +L+  A +RL A+ E  ELG G+Q+A R
Sbjct: 907  DKMGLAQLYQLRGRVGRSSRLAYAYFTFHPDKVLTPAAEKRLEAIREFTELGAGYQIALR 966

Query: 617  DMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQVDININPH 676
            D+ IRG G + G +Q G +  VG DL+ +ML +++ ++ +   V  P     ++I ++ +
Sbjct: 967  DLEIRGAGNLLGAEQHGFIATVGFDLYTQMLAQAVQEL-KGEPVETPVDPT-IEIAVDAY 1024

Query: 677  LPSEYINHLENPMEIINEAER-VAEKDTWSLMQFTENLRRQYGKEPRPMEVLLKKLYLRR 735
            LP +Y+    +P + I   +R V+ K    +    E +  ++G  P  +  L++   +R 
Sbjct: 1025 LPDDYVP---DPRQKIEMYKRLVSAKSLAEVEALAEEIEDRFGTAPASVTALVQLSRVRV 1081

Query: 736  MAADIGINRIYSSGKTVFMKANITKKV 762
            +A D+ + ++   G  + +      +V
Sbjct: 1082 LARDVRLTQVSHKGDRILLGGGPDSRV 1108


>F8I4F7_SULAT (tr|F8I4F7) Transcription-repair coupling factor OS=Sulfobacillus
            acidophilus (strain TPY) GN=mfd PE=4 SV=1
          Length = 1172

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 259/627 (41%), Positives = 392/627 (62%), Gaps = 16/627 (2%)

Query: 139  LRNGDYVVHKKVGIGMFIGIK-MDVPKNSAEPTEYVFIEYADGMAKLPVKQSSKMLYRYC 197
            L+ GDYVVH   GIG F+G++ +D+     +  +Y+ I+YA G   L V      L +  
Sbjct: 495  LKPGDYVVHMTHGIGRFLGVRTLDI---QGQHKDYLHIQYA-GADTLYVPVDQLGLVQKY 550

Query: 198  LPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY-PKSPAM 256
            +  E ++P+ LSK+     W + K K K ++++M  +L++LY  R  +    Y P +P  
Sbjct: 551  VGVEGQEPR-LSKMGGQE-WTRTKEKVKASVREMAEELLKLYAKREAEPGIAYGPDTPWQ 608

Query: 257  AEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAIRCVVSAK 316
            AEF A FPYE TPDQ +A  D+++D+ ER  PMDRL+CGDVG+GKTEVALRA    +   
Sbjct: 609  AEFEAAFPYEETPDQLRAIDDIKRDM-ERARPMDRLLCGDVGYGKTEVALRAAFKAIMGG 667

Query: 317  KQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKSGELDIIV 376
            KQ   L PT +LA+QH+     R A YP + V +LSRF+T  +++E L  +K G++D++V
Sbjct: 668  KQVAFLVPTTLLAEQHYQTAKSRLAGYP-VTVEVLSRFRTPKQQKEILARVKKGQVDLLV 726

Query: 377  GTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPRTLYLALT 436
            GTH LL   V + +LGLL+VDEE RFGV  KE+I   K +VDVLTL+ATPIPRTL++AL 
Sbjct: 727  GTHRLLAKDVQFQDLGLLIVDEEHRFGVAHKERIKALKGNVDVLTLTATPIPRTLHMALV 786

Query: 437  GFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEVMEF 496
            G RD S+I TPP +R+P++T ++ + ++ V  AI+ ELDRGGQVFYV  RI+ ++  +E 
Sbjct: 787  GIRDMSVIETPPEDRLPVETVVAEYDEDLVREAIRRELDRGGQVFYVQNRIRSMDRTVEH 846

Query: 497  LEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNANTIIVQDV 556
            L + FP + +A+ HG+    ++ED M +F   E  IL++TNI+ESGLDI NANT+IV+D 
Sbjct: 847  LMKLFPGIRLAVVHGQMEENRIEDVMARFIEQEYDILVTTNIIESGLDIPNANTLIVEDA 906

Query: 557  QQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQGFQLAER 616
             + GLAQLYQLRGRVGR+ + AYAY  +    +L+  A +RL A+ E  ELG G+Q+A R
Sbjct: 907  DKMGLAQLYQLRGRVGRSSRLAYAYFTFHPDKVLTPAAEKRLEAIREFTELGAGYQIALR 966

Query: 617  DMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQVDININPH 676
            D+ IRG G + G +Q G +  VG DL+ +ML +++ ++ +   V  P     ++I ++ +
Sbjct: 967  DLEIRGAGNLLGAEQHGFIATVGFDLYTQMLAQAVQEL-KGEPVETPVDPT-IEIAVDAY 1024

Query: 677  LPSEYINHLENPMEIINEAER-VAEKDTWSLMQFTENLRRQYGKEPRPMEVLLKKLYLRR 735
            LP +Y+    +P + I   +R V+ K    +    E +  ++G  P  +  L++   +R 
Sbjct: 1025 LPDDYVP---DPRQKIEMYKRLVSAKSLAEVEALAEEIEDRFGTAPASVTALVQLSRVRV 1081

Query: 736  MAADIGINRIYSSGKTVFMKANITKKV 762
            +A D+ + ++   G  + +      +V
Sbjct: 1082 LARDVRLTQVSHKGDRILLGGGPDSRV 1108


>C0XFV1_LACHI (tr|C0XFV1) Transcription-repair coupling factor OS=Lactobacillus
            hilgardii ATCC 8290 GN=HMPREF0519_0112 PE=4 SV=1
          Length = 1168

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 267/631 (42%), Positives = 396/631 (62%), Gaps = 19/631 (3%)

Query: 129  NFSYKVDPYT-LRNGDYVVHKKVGIGMFIGIK-MDVPKNSAEPTEYVFIEYADGMAKL-- 184
            N + ++  YT L+ GDYVVH   GIG + G+K M+V     +  +Y+ I Y D  AKL  
Sbjct: 476  NNAERIKSYTDLKPGDYVVHVNHGIGRYEGMKTMEV---DGKHQDYLTISYRDS-AKLFI 531

Query: 185  PVKQSSKMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLK 244
            PV Q + M+ +Y   +E+KKP+ ++KL   S W+K K K    I+ +  DL+ELY  R  
Sbjct: 532  PVTQLN-MIQKYV-SSEDKKPR-INKLG-GSEWQKTKRKVASKIEDIADDLIELYAKRDA 587

Query: 245  QRRPPYPKSPAMA-EFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTE 303
            ++   YP   ++  EF A+FPY  TPDQ ++  +++ D+ E   PMDRL+ GDVG+GKTE
Sbjct: 588  EKGYAYPPDDSLQNEFEARFPYTETPDQLRSADEIKHDM-EHNKPMDRLLVGDVGYGKTE 646

Query: 304  VALRAIRCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEH 363
            VALRA    V   KQ   L PT +LA+QH++ + ERF+ YP I+V +LSRFQT A+ +E 
Sbjct: 647  VALRAAFKAVEVGKQVAFLVPTTILAQQHYETMLERFSDYP-IEVRVLSRFQTTAQIKET 705

Query: 364  LESIKSGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLS 423
            LE +K G +D++VGTH LL   V +SNLGLL++DEEQRFGVK KE+I   +T VDVLTL+
Sbjct: 706  LEGLKKGTVDVVVGTHRLLSKDVKFSNLGLLIIDEEQRFGVKHKERIKEMRTDVDVLTLT 765

Query: 424  ATPIPRTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYV 483
            ATPIPRTL +++ G RD S+I TPP  R PI+T++   +   +  AI+ E+ RGGQVFY+
Sbjct: 766  ATPIPRTLNMSMMGVRDLSVIETPPSNRYPIQTYVIEQNAGTIREAIEREMARGGQVFYL 825

Query: 484  LPRIKGLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGL 543
              R+  +E+ +  L E  PD  IA  HG+    Q+ED +  F  GE  +L++T I+E+G+
Sbjct: 826  HNRVADIEKTVSQLSELVPDARIAYIHGQMTENQMEDILYDFVNGEYDVLVTTTIIETGV 885

Query: 544  DIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEE 603
            DI N NT+ V++    GL+QLYQLRGR+GR+ + AYAY +Y    +L++   +RL A+ +
Sbjct: 886  DIPNVNTLFVENADHMGLSQLYQLRGRIGRSSRVAYAYFMYQPNKVLTEIGEKRLEAIRD 945

Query: 604  CRELGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVP 663
              ELG GF++A RD+ IRG G + G+QQ+G V +VG DL+ +ML +++SK     V    
Sbjct: 946  FTELGSGFKIAMRDLSIRGAGNLLGKQQSGFVDSVGYDLYTQMLSDAVSKKRGKNVAFKT 1005

Query: 664  YHSVQVDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRP 723
              +V++D  +  +LPS+YI   +  +EI     ++  +D   L + T++L  ++G    P
Sbjct: 1006 DATVELD--LEAYLPSDYIQDSQQKIEIYKRIRQIENQD--QLNEVTDDLIDRFGDYNEP 1061

Query: 724  MEVLLKKLYLRRMAADIGINRIYSSGKTVFM 754
            +  LLK   ++  A    I +++  G  V +
Sbjct: 1062 VANLLKISEMKMYADKAMIEKVHQDGPRVTL 1092


>C0WQN6_LACBU (tr|C0WQN6) Transcription-repair coupling factor OS=Lactobacillus
            buchneri ATCC 11577 GN=HMPREF0497_1439 PE=4 SV=1
          Length = 1168

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 267/631 (42%), Positives = 396/631 (62%), Gaps = 19/631 (3%)

Query: 129  NFSYKVDPYT-LRNGDYVVHKKVGIGMFIGIK-MDVPKNSAEPTEYVFIEYADGMAKL-- 184
            N + ++  YT L+ GDYVVH   GIG + G+K M+V     +  +Y+ I Y D  AKL  
Sbjct: 476  NNAERIKSYTDLKPGDYVVHVNHGIGRYEGMKTMEV---DGKHQDYLTISYRDS-AKLFI 531

Query: 185  PVKQSSKMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLK 244
            PV Q + M+ +Y   +E+KKP+ ++KL   S W+K K K    I+ +  DL+ELY  R  
Sbjct: 532  PVTQLN-MIQKYV-SSEDKKPR-INKLG-GSEWQKTKRKVASKIEDIADDLIELYAKRDA 587

Query: 245  QRRPPYPKSPAMA-EFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTE 303
            ++   YP   ++  EF A+FPY  TPDQ ++  +++ D+ E   PMDRL+ GDVG+GKTE
Sbjct: 588  EKGYAYPPDDSLQNEFEARFPYTETPDQLRSADEIKHDM-EHNKPMDRLLVGDVGYGKTE 646

Query: 304  VALRAIRCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEH 363
            VALRA    V   KQ   L PT +LA+QH++ + ERF+ YP I+V +LSRFQT A+ +E 
Sbjct: 647  VALRAAFKAVEVGKQVAFLVPTTILAQQHYETMLERFSDYP-IEVRVLSRFQTTAQIKET 705

Query: 364  LESIKSGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLS 423
            LE +K G +D++VGTH LL   V +SNLGLL++DEEQRFGVK KE+I   +T VDVLTL+
Sbjct: 706  LEGLKKGTVDVVVGTHRLLSKDVKFSNLGLLIIDEEQRFGVKHKERIKEMRTDVDVLTLT 765

Query: 424  ATPIPRTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYV 483
            ATPIPRTL +++ G RD S+I TPP  R PI+T++   +   +  AI+ E+ RGGQVFY+
Sbjct: 766  ATPIPRTLNMSMMGVRDLSVIETPPSNRYPIQTYVIEQNAGTIREAIEREMARGGQVFYL 825

Query: 484  LPRIKGLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGL 543
              R+  +E+ +  L E  PD  IA  HG+    Q+ED +  F  GE  +L++T I+E+G+
Sbjct: 826  HNRVADIEKTVSQLSELVPDARIAYIHGQMTENQMEDILYDFVNGEYDVLVTTTIIETGV 885

Query: 544  DIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEE 603
            DI N NT+ V++    GL+QLYQLRGR+GR+ + AYAY +Y    +L++   +RL A+ +
Sbjct: 886  DIPNVNTLFVENADHMGLSQLYQLRGRIGRSSRVAYAYFMYQPNKVLTEIGEKRLEAIRD 945

Query: 604  CRELGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVP 663
              ELG GF++A RD+ IRG G + G+QQ+G V +VG DL+ +ML +++SK     V    
Sbjct: 946  FTELGSGFKIAMRDLSIRGAGNLLGKQQSGFVDSVGYDLYTQMLSDAVSKKRGKNVAFKT 1005

Query: 664  YHSVQVDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRP 723
              +V++D  +  +LPS+YI   +  +EI     ++  +D   L + T++L  ++G    P
Sbjct: 1006 DATVELD--LEAYLPSDYIQDSQQKIEIYKRIRQIENQD--QLNEVTDDLIDRFGDYNEP 1061

Query: 724  MEVLLKKLYLRRMAADIGINRIYSSGKTVFM 754
            +  LLK   ++  A    I +++  G  V +
Sbjct: 1062 VANLLKISEMKMYADKAMIEKVHQDGPRVTL 1092


>E8UTS1_THEBF (tr|E8UTS1) Transcription-repair coupling factor
            OS=Thermoanaerobacter brockii subsp. finnii (strain ATCC
            43586 / DSM 3389 / AKO-1) GN=Thebr_0175 PE=4 SV=1
          Length = 1165

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 257/630 (40%), Positives = 390/630 (61%), Gaps = 19/630 (3%)

Query: 133  KVDPYT-LRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADG-MAKLPVKQSS 190
            K+  +T L  G YVVH   GIG + GI+    K      +Y+ I YA G    +PV+Q  
Sbjct: 494  KIKSFTELEIGSYVVHVNYGIGKYEGIEK--IKVDGIVRDYLKIIYAGGDTLFVPVEQLD 551

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
             ++ +Y  P +N  P  L+KL   S W + K K K A++ +  DL++LY  R   +   +
Sbjct: 552  -LVQKYVGPTDN--PPKLNKLG-GSEWLRAKRKAKKAVEDLAKDLIQLYAKRQMVKGHAF 607

Query: 251  -PKSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
             P +P   EF  QFPYE T DQ +   ++++D+ E++ PMDRL+CGDVG+GKTEVALRA 
Sbjct: 608  SPDTPWQKEFEEQFPYEETEDQLRCIKEIKEDM-EKDRPMDRLLCGDVGYGKTEVALRAA 666

Query: 310  RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKS 369
               V+  KQ   L PT +LA QH+    ERF  +P +K+ +LSRF+T  E+ + ++ +  
Sbjct: 667  FKAVADGKQVAFLCPTTILAYQHYANFIERFKEFP-VKIEMLSRFRTPKEQSKIIKELAE 725

Query: 370  GELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPR 429
            G +DIIVGTH LL N + + +LGLL++DEEQRFGV  KEKI   K ++DVLTLSATPIPR
Sbjct: 726  GNIDIIVGTHRLLQNDIKFKDLGLLIIDEEQRFGVVHKEKIKKLKENIDVLTLSATPIPR 785

Query: 430  TLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKG 489
            TL+++L G RD S++  PP +R P++T++  F++E +  AI  E+ RGGQV++V  R+ G
Sbjct: 786  TLHMSLIGIRDMSVLENPPEDRFPVETYVVEFNEELIKDAILREIARGGQVYFVYNRVNG 845

Query: 490  LEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNAN 549
            +E++  F+++  P   +A+ HG+    QLE  M  F  GE  +L+ST I+E+GLDI N N
Sbjct: 846  IEKMASFVKDLVPGCRVAVAHGQMEESQLEKVMIDFLNGEYDVLVSTTIIETGLDIPNVN 905

Query: 550  TIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQ 609
            TIIV D  + GL+QLYQLRGRVGR+++ AYAY  Y    +LS+ A +RL A++E  E G 
Sbjct: 906  TIIVYDADKLGLSQLYQLRGRVGRSNRLAYAYFTYRKDKVLSEVAEKRLEAIKEFTEFGS 965

Query: 610  GFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSV-- 667
            GF++A RD+ IRG G + G +Q G +  +G DL+ ++L E++  ++       P   +  
Sbjct: 966  GFKIAMRDLEIRGAGNLLGAEQHGHIDAIGYDLYLKLLEEAIRNLKGE----APKEEITT 1021

Query: 668  QVDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVL 727
             +DI +N ++ S YI      +E+  +   +  ++   +++ +E L  ++G  P+P+E L
Sbjct: 1022 TIDIKVNAYIDSSYIEDENLRLEMYKKIASIKSRE--DMIEISEELVDRFGDYPKPVEAL 1079

Query: 728  LKKLYLRRMAADIGINRIYSSGKTVFMKAN 757
            L+  YL+ +A+ + I  I   G +V +K N
Sbjct: 1080 LEIAYLKAIASQVNITEITEKGNSVILKFN 1109


>B0KBG3_THEP3 (tr|B0KBG3) Transcription-repair coupling factor
            OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223
            / 39E) GN=Teth39_0169 PE=4 SV=1
          Length = 1165

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 257/630 (40%), Positives = 390/630 (61%), Gaps = 19/630 (3%)

Query: 133  KVDPYT-LRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADG-MAKLPVKQSS 190
            K+  +T L  G YVVH   GIG + GI+    K      +Y+ I YA G    +PV+Q  
Sbjct: 494  KIKSFTELEIGSYVVHVNYGIGKYEGIEK--IKVDGIVRDYLKIIYAGGDTLFVPVEQLD 551

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
             ++ +Y  P +N  P  L+KL   S W + K K K A++ +  DL++LY  R   +   +
Sbjct: 552  -LVQKYVGPTDN--PPKLNKLG-GSEWLRAKRKAKKAVEDLAKDLIQLYAKRQMVKGHAF 607

Query: 251  -PKSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
             P +P   EF  QFPYE T DQ +   ++++D+ E++ PMDRL+CGDVG+GKTEVALRA 
Sbjct: 608  SPDTPWQKEFEEQFPYEETEDQLRCIKEIKEDM-EKDRPMDRLLCGDVGYGKTEVALRAA 666

Query: 310  RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKS 369
               V+  KQ   L PT +LA QH+    ERF  +P +K+ +LSRF+T  E+ + ++ +  
Sbjct: 667  FKAVADGKQVAFLCPTTILAYQHYANFIERFKEFP-VKIEMLSRFRTPKEQSKIIKELAE 725

Query: 370  GELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPR 429
            G +DIIVGTH LL N + + +LGLL++DEEQRFGV  KEKI   K ++DVLTLSATPIPR
Sbjct: 726  GNIDIIVGTHRLLQNDIKFKDLGLLIIDEEQRFGVVHKEKIKKLKENIDVLTLSATPIPR 785

Query: 430  TLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKG 489
            TL+++L G RD S++  PP +R P++T++  F++E +  AI  E+ RGGQV++V  R+ G
Sbjct: 786  TLHMSLIGIRDMSVLENPPEDRFPVETYVVEFNEELIKDAILREIARGGQVYFVYNRVNG 845

Query: 490  LEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNAN 549
            +E++  F+++  P   +A+ HG+    QLE  M  F  GE  +L+ST I+E+GLDI N N
Sbjct: 846  IEKMASFVKDLVPGCRVAVAHGQMEESQLEKVMIDFLNGEYDVLVSTTIIETGLDIPNVN 905

Query: 550  TIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQ 609
            TIIV D  + GL+QLYQLRGRVGR+++ AYAY  Y    +LS+ A +RL A++E  E G 
Sbjct: 906  TIIVYDADKLGLSQLYQLRGRVGRSNRLAYAYFTYRKDKVLSEVAEKRLEAIKEFTEFGS 965

Query: 610  GFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSV-- 667
            GF++A RD+ IRG G + G +Q G +  +G DL+ ++L E++  ++       P   +  
Sbjct: 966  GFKIAMRDLEIRGAGNLLGAEQHGHIDAIGYDLYLKLLEEAIRNLKGE----APKEEITT 1021

Query: 668  QVDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVL 727
             +DI +N ++ S YI      +E+  +   +  ++   +++ +E L  ++G  P+P+E L
Sbjct: 1022 TIDIKVNAYIDSSYIEDENLRLEMYKKIASIKSRE--DMIEISEELVDRFGDYPKPVEAL 1079

Query: 728  LKKLYLRRMAADIGINRIYSSGKTVFMKAN 757
            L+  YL+ +A+ + I  I   G +V +K N
Sbjct: 1080 LEIAYLKAIASQVNITEITEKGNSVILKFN 1109


>C8PQM7_9SPIO (tr|C8PQM7) Transcription-repair coupling factor OS=Treponema
            vincentii ATCC 35580 GN=mfd PE=4 SV=1
          Length = 1154

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 264/640 (41%), Positives = 398/640 (62%), Gaps = 23/640 (3%)

Query: 139  LRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYA-DGMAKLPVKQSSKMLYRYC 197
            L  GDYVVH   GIG F GI+    K      +Y+ + YA D    +P++Q++ ++ RY 
Sbjct: 491  LNPGDYVVHVNYGIGQFKGIER--VKTLGHERDYINLLYAQDETVFIPIEQAN-LVQRY- 546

Query: 198  LPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPYPK-SPAM 256
            + NE + P+    +  +  WE RK K K +++ +   L++LY  R       + K +   
Sbjct: 547  IGNEGEAPRL--DIIGSKAWENRKNKVKKSVEDIADKLIDLYSRRKAAAGFAFAKDNEWQ 604

Query: 257  AEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAIRCVVSAK 316
              F A FPYE T DQ     DV+ D+ E+  PMDRLICGDVG+GKTE+A+RA    V   
Sbjct: 605  TAFEAAFPYEETEDQLTCIADVKTDM-EKPVPMDRLICGDVGYGKTEIAMRAAFKAVMNG 663

Query: 317  KQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKSGELDIIV 376
            KQA  LAPT +LA+QHF+   ERF  +P +K+  LSRF +KAE+++ L+ +K+GELDI++
Sbjct: 664  KQAAFLAPTTILAEQHFETFQERFQKFP-VKLARLSRFVSKAEQKKVLDQLKNGELDIVI 722

Query: 377  GTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPRTLYLALT 436
            GTH ++   V + +LGL++VDEEQRFGVK KE++   KT++D L+LSATPIPRTL+++L 
Sbjct: 723  GTHRVIQKDVQFKDLGLMIVDEEQRFGVKDKERLKQMKTNIDCLSLSATPIPRTLHISLL 782

Query: 437  GFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEVMEF 496
              RD SL+TTPP  R P++T +S F  EK+  AI++E+DRGGQVFY+  R++ LEE    
Sbjct: 783  KIRDMSLLTTPPQNRRPVETVISPFDPEKIAQAIRFEVDRGGQVFYLHNRVESLEETRYK 842

Query: 497  LEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNANTIIVQDV 556
            +++  P+V I I HG+  + +LED   +F +G   +LI+T I+E+G+DI NANTII+   
Sbjct: 843  IQQLIPEVLIDIAHGQMSATELEDIFRRFNMGGFHVLIATTIIENGIDIPNANTIIIDRA 902

Query: 557  QQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQGFQLAER 616
              +G++QLYQLRGRVGR+D++AYAYLLYP+   LS+ A++RL  + +  ELG GF++A +
Sbjct: 903  DMYGVSQLYQLRGRVGRSDRKAYAYLLYPENKALSEVAMKRLQVISDFTELGSGFKIAMK 962

Query: 617  DMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQVDININPH 676
            DM IRG G + G++Q+GD+ +VG DL+  +L E++ +++       P     +++     
Sbjct: 963  DMEIRGAGNLLGKEQSGDIYSVGFDLYLRLLEEAVERLQNAGY--EPETEPVIELEYTGF 1020

Query: 677  LPSEYINHLENPMEIINE--AERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLLKKLYLR 734
            +P  YI   E  MEI  +  A R AE+    L +    L  ++G  P   E LL    ++
Sbjct: 1021 IPDSYIRVPETKMEIYKKIAAVRTAEE----LDRLYAELSDRFGPVPEEAESLLSLAEIK 1076

Query: 735  RMAADIGINRIYSSGKTVFMK-ANITK----KVFKMMTDS 769
             + A + I  +     TV +  A ++K    K+ +M+ +S
Sbjct: 1077 IICAKLAIASLKERNGTVRITFAKVSKISIDKLLRMIKES 1116


>F2NRS4_TRES6 (tr|F2NRS4) Transcription-repair coupling factor OS=Treponema
            succinifaciens (strain ATCC 33096 / DSM 2489 / 6091)
            GN=Tresu_1252 PE=4 SV=1
          Length = 1246

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 251/606 (41%), Positives = 379/606 (62%), Gaps = 14/606 (2%)

Query: 142  GDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADG-MAKLPVKQSSKMLYRYCLPN 200
            GDY+VH   GIG+F GI+    K      +Y+ +EYAD  +A +P++Q + M+ RY + +
Sbjct: 586  GDYIVHVNYGIGLFKGIER--VKAMGTERDYIKLEYADEEIAFVPIEQVN-MVQRY-IGS 641

Query: 201  ENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPYPKSPAM-AEF 259
            EN+KP+ L ++   + W  RK K +  ++++   L++LY  R   R  P+PK     A F
Sbjct: 642  ENEKPR-LDRIGSKN-WSARKAKVQQKVEEIAEKLIDLYSKRQASRGFPFPKDTEWNAAF 699

Query: 260  TAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAIRCVVSAKKQA 319
             A FPYE TPDQ  A  +++ D+ E+  PMDRL+CGDVG+GKTE+A+RA    V   KQ 
Sbjct: 700  EAAFPYEDTPDQFSATQEIKADM-EKPVPMDRLVCGDVGYGKTEIAMRAAFKAVMGGKQV 758

Query: 320  MVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKSGELDIIVGTH 379
              LAPT +LA+QHF+   ERF  +P + +  LSRF +  E+++ +  I SGE+DII+GTH
Sbjct: 759  AFLAPTTILAEQHFENSQERFKNFP-VTIAQLSRFVSPTEQKKIISKIASGEIDIIIGTH 817

Query: 380  SLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPRTLYLALTGFR 439
             +L   V++ NLGL+++DEEQRFGVK KEK+ T KT++D L +SATPIPRTL+++L   R
Sbjct: 818  RILQKDVIFKNLGLMIIDEEQRFGVKDKEKLKTLKTNIDCLAMSATPIPRTLHMSLLKIR 877

Query: 440  DASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEVMEFLEE 499
            D SL+TTPP  R PI+T +  ++ EKV  AI+ E+ RGGQVFY+  R++ LEE    LE 
Sbjct: 878  DMSLLTTPPQNRQPIETAIEEYNDEKVARAIRNEVQRGGQVFYLHNRVETLEETRLKLEN 937

Query: 500  SFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNANTIIVQDVQQF 559
              P++ +   HGK  S++L+D   +F +G   IL++T I+E+G+DI N NTII+     +
Sbjct: 938  LVPEMLVETAHGKMTSEELDDIFRRFKMGGFHILVATTIIENGIDIPNVNTIIIDRADMY 997

Query: 560  GLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQGFQLAERDMG 619
            G++QLYQLRGRVGR+D++AYAYL YP    LS+ A++RL  + +  ELG GF++A +DM 
Sbjct: 998  GVSQLYQLRGRVGRSDRKAYAYLFYPQNKALSEVAMKRLQVISDFTELGSGFKIAMKDME 1057

Query: 620  IRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQVDININPHLPS 679
            IRG G + G+ Q+G+V  VG +++  +L  ++ ++      A     V +++     +P 
Sbjct: 1058 IRGAGNLLGKDQSGEVYAVGFEMYLTLLNSAIERLSNSDWTAP--EEVLLELEYTGFIPD 1115

Query: 680  EYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLLKKLYLRRMAAD 739
             YI   +  ME+  +   V  +D  SL    E L  ++G  P  +  LL    +R +   
Sbjct: 1116 TYIKDTQTKMELYKKIASVQTQD--SLNSVWEELFDRFGPIPDEVSSLLSLAKIRIICNK 1173

Query: 740  IGINRI 745
            + I+ +
Sbjct: 1174 LSISSL 1179


>K4KZ44_9FIRM (tr|K4KZ44) Transcription-repair coupling factor OS=Dehalobacter sp.
            CF GN=DCF50_p326 PE=4 SV=1
          Length = 1189

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 265/622 (42%), Positives = 388/622 (62%), Gaps = 19/622 (3%)

Query: 139  LRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKL--PVKQSSKMLYRY 196
            L+ GDYVVH   GIG F GI+  +  +  E  +Y  I YA G  KL  P+ Q  ++L +Y
Sbjct: 506  LKPGDYVVHFYHGIGKFTGIET-IEVDGIE-KDYFAIRYA-GEDKLYVPLDQL-QLLQKY 561

Query: 197  CLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPYPK-SPA 255
                E+  PK L+KLN    W K K + + A+++M ++L+ELY  R       YP+ S  
Sbjct: 562  LGTEESSTPK-LNKLNGNE-WNKAKARAQGAVKEMAINLLELYAKREGAVGFAYPEDSHW 619

Query: 256  MAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAIRCVVSA 315
              EF  +FPYE TPDQ Q+ ++V+KD+  +  PMDRL+CGDVG+GKTEVALRA    V +
Sbjct: 620  QKEFEDRFPYEETPDQLQSIMEVKKDMM-KSRPMDRLLCGDVGYGKTEVALRAAFKAVIS 678

Query: 316  KKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKSGELDII 375
             KQ  V+ PT +LA+QH++   ERF  YP +K+ +LSRF+T  E+++ ++S+K G LDI+
Sbjct: 679  GKQVAVMVPTTILAQQHYNTFRERFMDYP-VKIEMLSRFRTAKEQKQIIQSLKDGSLDIV 737

Query: 376  VGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPRTLYLAL 435
            VGTH LL   V + +LGLLVVDEEQRFGV  KE+I T KT+VDVLTLSATPIPRTL+++L
Sbjct: 738  VGTHRLLSEGVSFKDLGLLVVDEEQRFGVAHKERIKTLKTNVDVLTLSATPIPRTLHMSL 797

Query: 436  TGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEVME 495
             G RD S+I TPP +R P++T ++ F+ + V  AI+ EL RGGQ F+V  R++ L+ V+ 
Sbjct: 798  VGLRDMSVIMTPPEDRFPVQTFVAEFNADLVRDAIRRELYRGGQAFFVHNRVETLDRVVR 857

Query: 496  FLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNANTIIVQD 555
             L    P+    + HG+    QLE  M  F   E  ILI T I+E+GLD+ N NT+IV  
Sbjct: 858  LLNLIIPEARCGVVHGQMSETQLEKEMISFLEKEKDILICTTIIETGLDMPNVNTLIVDG 917

Query: 556  VQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQGFQLAE 615
              +FGL+QLYQLRGRVGR++++AYAY LY  + +L+++A +RL+ + E  E G GF++A 
Sbjct: 918  ADKFGLSQLYQLRGRVGRSNRKAYAYFLYQPQKILTEEAEKRLTTIREFTEFGSGFKIAM 977

Query: 616  RDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRV--VAVPYHSVQVDINI 673
            RD+ IRG G   G +Q G + ++G  L+ +ML E++ ++    V  VA P     +DI +
Sbjct: 978  RDLEIRGAGNFIGGEQHGHLASIGFSLYVKMLKEAVQQLRGETVEEVAEPV----IDIQV 1033

Query: 674  NPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLLKKLYL 733
               LP EYI   +    +      ++ ++   L  F + L  ++G  P  +E L K + +
Sbjct: 1034 KALLPDEYIVDKQIKATLYQRMLGISSEE--HLSDFLDELVDRFGNPPDEVENLAKIIRI 1091

Query: 734  RRMAADIGINRIYSSGKTVFMK 755
            R  A  +G+ ++    + + ++
Sbjct: 1092 RMKAKQLGLEQVVQHKQNISLR 1113


>K4KSY0_9FIRM (tr|K4KSY0) Transcription-repair coupling factor OS=Dehalobacter sp.
            DCA GN=DHBDCA_p266 PE=4 SV=1
          Length = 1189

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 265/622 (42%), Positives = 388/622 (62%), Gaps = 19/622 (3%)

Query: 139  LRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKL--PVKQSSKMLYRY 196
            L+ GDYVVH   GIG F GI+  +  +  E  +Y  I YA G  KL  P+ Q  ++L +Y
Sbjct: 506  LKPGDYVVHFYHGIGKFTGIET-IEVDGIE-KDYFAIRYA-GEDKLYVPLDQL-QLLQKY 561

Query: 197  CLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPYPK-SPA 255
                E+  PK L+KLN    W K K + + A+++M ++L+ELY  R       YP+ S  
Sbjct: 562  LGTEESSTPK-LNKLNGNE-WNKAKARAQGAVKEMAINLLELYAKREGAVGFAYPEDSHW 619

Query: 256  MAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAIRCVVSA 315
              EF  +FPYE TPDQ Q+ ++V+KD+  +  PMDRL+CGDVG+GKTEVALRA    V +
Sbjct: 620  QKEFEDRFPYEETPDQLQSIMEVKKDMM-KSRPMDRLLCGDVGYGKTEVALRAAFKAVIS 678

Query: 316  KKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKSGELDII 375
             KQ  V+ PT +LA+QH++   ERF  YP +K+ +LSRF+T  E+++ ++S+K G LDI+
Sbjct: 679  GKQVAVMVPTTILAQQHYNTFRERFMDYP-VKIEMLSRFRTAKEQKQIIQSLKDGSLDIV 737

Query: 376  VGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPRTLYLAL 435
            VGTH LL   V + +LGLLVVDEEQRFGV  KE+I T KT+VDVLTLSATPIPRTL+++L
Sbjct: 738  VGTHRLLSEGVSFKDLGLLVVDEEQRFGVAHKERIKTLKTNVDVLTLSATPIPRTLHMSL 797

Query: 436  TGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEVME 495
             G RD S+I TPP +R P++T ++ F+ + V  AI+ EL RGGQ F+V  R++ L+ V+ 
Sbjct: 798  VGLRDMSVIMTPPEDRFPVQTFVAEFNADLVRDAIRRELYRGGQAFFVHNRVETLDRVVR 857

Query: 496  FLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNANTIIVQD 555
             L    P+    + HG+    QLE  M  F   E  ILI T I+E+GLD+ N NT+IV  
Sbjct: 858  LLNLIIPEARCGVVHGQMSETQLEKEMISFLEKEKDILICTTIIETGLDMPNVNTLIVDG 917

Query: 556  VQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQGFQLAE 615
              +FGL+QLYQLRGRVGR++++AYAY LY  + +L+++A +RL+ + E  E G GF++A 
Sbjct: 918  ADKFGLSQLYQLRGRVGRSNRKAYAYFLYQPQKILTEEAEKRLTTIREFTEFGSGFKIAM 977

Query: 616  RDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRV--VAVPYHSVQVDINI 673
            RD+ IRG G   G +Q G + ++G  L+ +ML E++ ++    V  VA P     +DI +
Sbjct: 978  RDLEIRGAGNFIGGEQHGHLASIGFSLYVKMLKEAVQQLRGETVEEVAEPV----IDIQV 1033

Query: 674  NPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLLKKLYL 733
               LP EYI   +    +      ++ ++   L  F + L  ++G  P  +E L K + +
Sbjct: 1034 KALLPDEYIVDKQIKATLYQRMLGISSEE--HLSDFLDELVDRFGNPPDEVENLAKIIRI 1091

Query: 734  RRMAADIGINRIYSSGKTVFMK 755
            R  A  +G+ ++    + + ++
Sbjct: 1092 RMKAKQLGLEQVVQHKQNISLR 1113


>G9ZQ61_9LACO (tr|G9ZQ61) Transcription-repair coupling factor OS=Lactobacillus
            parafarraginis F0439 GN=HMPREF9103_01866 PE=4 SV=1
          Length = 1177

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 260/629 (41%), Positives = 398/629 (63%), Gaps = 15/629 (2%)

Query: 129  NFSYKVDPYT-LRNGDYVVHKKVGIGMFIGIK-MDVPKNSAEPTEYVFIEYADGMAKLPV 186
            N + ++  YT L+ GDYVVH   GIG + G+K M+V     +  +Y+ I Y D  AKL +
Sbjct: 485  NNAERIKSYTDLKPGDYVVHVNHGIGRYEGMKTMEV---DGKHQDYLTISYRDS-AKLFI 540

Query: 187  KQSSKMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQR 246
              +   L +  + +E+KKP+ ++KL     W+K K K    I+ +  DL++LY  R  ++
Sbjct: 541  PVTQLNLIQKYVSSEDKKPR-INKLGGGE-WQKTKRKVASKIEDIADDLIDLYAKRDAEK 598

Query: 247  RPPYPKSPAM-AEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVA 305
               YPK  ++ AEF A+FPY  TPDQ ++  ++++D+ E   PMDRL+ GDVG+GKTEVA
Sbjct: 599  GYAYPKDDSLQAEFEARFPYTETPDQLRSADEIKRDM-EHPKPMDRLLVGDVGYGKTEVA 657

Query: 306  LRAIRCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLE 365
            LRA    V   KQ   L PT +LA+QH+D + +RFA YP I+V +LSRFQT A+  E L 
Sbjct: 658  LRAAFKAVEVGKQVAFLVPTTILAQQHYDTMMDRFADYP-IEVRVLSRFQTTAQVRETLA 716

Query: 366  SIKSGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSAT 425
             +K+G +DI+VGTH LL   V ++NLGLL++DEEQRFGVK KE+I   +T VDVLTL+AT
Sbjct: 717  GLKNGTVDIVVGTHRLLSKDVQFNNLGLLIIDEEQRFGVKHKERIKEMRTDVDVLTLTAT 776

Query: 426  PIPRTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLP 485
            PIPRTL +++ G RD S+I TPP  R PI+T++   +   +  AI  E+ RGGQVFY+  
Sbjct: 777  PIPRTLNMSMMGVRDLSVIETPPSNRYPIQTYVLEQNAGTIREAITREMARGGQVFYLHN 836

Query: 486  RIKGLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDI 545
            R++ +E+ +E + E  P+  +A  HG+    QLED +  F  GE  +L++T I+E+G+DI
Sbjct: 837  RVEDIEKTVEQISELVPEARVAYIHGQMTENQLEDILYDFINGEYDVLVTTTIIETGVDI 896

Query: 546  QNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECR 605
             N NT+ V++    GL+QLYQLRGR+GR+ + AYAY +Y    +L++   +RL A+ +  
Sbjct: 897  PNVNTLFVENADHMGLSQLYQLRGRIGRSSRVAYAYFMYQPNKVLTEIGEKRLEAIRDFT 956

Query: 606  ELGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYH 665
            ELG GF++A RD+ IRG G + G+QQ G V +VG DL+ +ML ++++K +  R VA    
Sbjct: 957  ELGSGFKIAMRDLSIRGAGNLLGKQQHGFVDSVGYDLYTQMLGDAVAK-KRGRKVAFKTD 1015

Query: 666  SVQVDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPME 725
            +  +++++  +LPS YI   +  +EI     ++  +D   L +  ++L  ++G   +P+ 
Sbjct: 1016 TT-IELDVEAYLPSSYIQDNQQKIEIYKRIRQIENED--QLHEVDDDLIDRFGDYGQPVA 1072

Query: 726  VLLKKLYLRRMAADIGINRIYSSGKTVFM 754
             LLK   ++  + +  I++I+  G  V +
Sbjct: 1073 NLLKIAEMKMYSDESMIDKIHQDGPRVTL 1101


>E7NW30_TREPH (tr|E7NW30) Transcription-repair coupling factor OS=Treponema
            phagedenis F0421 GN=HMPREF9554_02293 PE=4 SV=1
          Length = 1148

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 261/638 (40%), Positives = 396/638 (62%), Gaps = 19/638 (2%)

Query: 139  LRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADG-MAKLPVKQSSKMLYRYC 197
            L  GDYVVH   GIG+F GI+    ++     +Y+ + YA+     +P++Q++ ++ RY 
Sbjct: 485  LNPGDYVVHVNYGIGLFKGIER--VRSGGTERDYINLLYANEETVFIPIEQAN-LVQRY- 540

Query: 198  LPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY-PKSPAM 256
            + NE + P+ L  L   S WE RK K K +++ +   L++LY  R   R   + P     
Sbjct: 541  IGNEGEAPR-LDILGSKS-WENRKNKVKKSVEDIANKLIDLYSRRKAARGHAFQPDDEWQ 598

Query: 257  AEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAIRCVVSAK 316
              F A FPYE T DQ     +V+ D+ E+  PMDRL+CGDVG+GKTEVA+RA    +   
Sbjct: 599  LAFEAAFPYEETDDQLTCVAEVKADM-EKPVPMDRLVCGDVGYGKTEVAMRAAFKAIMGG 657

Query: 317  KQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKSGELDIIV 376
            KQ   L+PT +LA+QHF+ + ERF  +P + V  +SRF T++E+++ LE +K+G++DI+V
Sbjct: 658  KQVAFLSPTTILAEQHFETLDERFKNFP-VTVARMSRFITRSEQKKILEQLKNGDIDILV 716

Query: 377  GTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPRTLYLALT 436
            GTH ++   VV+ +LGL+++DEEQRFGVK KE++   KT+VD L LSATPIPRTL+++L 
Sbjct: 717  GTHRIIQKDVVFKDLGLMIIDEEQRFGVKDKERLKQMKTNVDCLALSATPIPRTLHMSLL 776

Query: 437  GFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEVMEF 496
              RD SL+TTPP  R PI+T +  F  EKV +AI+ E++RGGQVFY+  R++ L+E    
Sbjct: 777  KIRDMSLLTTPPQNRRPIETVIQEFDPEKVAAAIRQEVERGGQVFYLHNRVETLDETARM 836

Query: 497  LEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNANTIIVQDV 556
            L+   P+V I   HG+  S +LED  ++F +G   +LI+T I+E+G+DI NANTII+   
Sbjct: 837  LQNLVPEVLIDSAHGQMNSDELEDIFKRFNMGGFHVLIATTIIENGIDIPNANTIIIDRA 896

Query: 557  QQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQGFQLAER 616
              +G++QLYQLRGRVGR+DK+AYAYLLYP    LS+ A++RL  + +  ELG GF++A +
Sbjct: 897  DMYGVSQLYQLRGRVGRSDKKAYAYLLYPKDRALSEIAMKRLQVISDFTELGSGFKIAMK 956

Query: 617  DMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQVDININPH 676
            DM IRG G + G +Q+GD+ +VG DL+  +L E++ +++       P   V V+++    
Sbjct: 957  DMEIRGAGNLLGREQSGDIYSVGFDLYLRLLEEAIERLQNADY--EPPQEVLVELDYTGF 1014

Query: 677  LPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLLKKLYLRRM 736
            +P  YI+  E  MEI  +   V   +    M + E + R +G+ P  +E LL    ++  
Sbjct: 1015 IPDSYISVPETKMEIYKKIAAVHTSEGLDRM-YAEIIDR-FGQPPEEVESLLALAEIKIT 1072

Query: 737  AADIGINRIYSSGKTV---FMKAN--ITKKVFKMMTDS 769
               + I+ +   G  V   FM+ +     K+ +M+  S
Sbjct: 1073 CNKLAISSLKERGGRVNIEFMRVSRISIDKLLRMIKQS 1110


>K8N453_STASI (tr|K8N453) Transcription-repair-coupling factor OS=Staphylococcus
            simulans ACS-120-V-Sch1 GN=HMPREF9310_02432 PE=4 SV=1
          Length = 1172

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 257/623 (41%), Positives = 397/623 (63%), Gaps = 27/623 (4%)

Query: 139  LRNGDYVVHKKVGIGMFIGIKM----DVPKNSAEPTEYVFIEYADGMAKL--PVKQSSKM 192
            L+ GDYVVH   G+G ++G++     DV ++      Y+ I+Y  G  +L  PV Q  ++
Sbjct: 497  LKVGDYVVHVHHGVGRYLGVETLEVGDVHRD------YIKIQYK-GTDQLFVPVDQMDQV 549

Query: 193  LYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHR-LKQRRPPYP 251
              +  + +E+K PK L+KL  T  W+K K K + +++ +  +L+ELY  R + +     P
Sbjct: 550  --QKYVASEDKTPK-LNKLGGTE-WKKTKAKVQQSVEDIADELIELYREREMAEGHQFGP 605

Query: 252  KSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAIRC 311
             +    EF   FPY+ T DQ ++  ++++D+ E+E PMDRL+CGDVG+GKTEVALRA   
Sbjct: 606  DTEQQHEFEMDFPYDLTADQAKSIDEIKEDM-EKERPMDRLLCGDVGYGKTEVALRAAFK 664

Query: 312  VVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKSGE 371
             V   KQ   L PT +LA+QH++ + ER   +P + + L+SRF+T  E +E  + +K G 
Sbjct: 665  AVMEGKQVAFLVPTTILAQQHYETLLERMQDFP-VNIQLMSRFRTPKEIKETKQGLKDGI 723

Query: 372  LDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPRTL 431
            +DI+VGTH LL   V Y +LGLLVVDEEQRFGV+ KE+I T KT+VDVLTL+ATPIPRTL
Sbjct: 724  IDIVVGTHKLLAKDVKYKDLGLLVVDEEQRFGVRHKERIKTLKTNVDVLTLTATPIPRTL 783

Query: 432  YLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKGLE 491
            ++++ G RD S+I TPP  R P++T++   +   +  A++ EL RGGQ FY+  R++ + 
Sbjct: 784  HMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELARGGQAFYLYNRVQSIY 843

Query: 492  EVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNANTI 551
            E  E L+   PD  I + HG+   ++LEDTM  F  GE  IL++T I+E+G+D+ NANT+
Sbjct: 844  EKREQLQMLMPDATIGVAHGRMTERELEDTMIGFVNGEYDILVTTTIIETGVDVPNANTL 903

Query: 552  IVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQGF 611
            I+++  +FGL+QLYQLRGRVGR+ +  Y Y L+P   +LS+ A ERL A++E  ELG GF
Sbjct: 904  IIEEADRFGLSQLYQLRGRVGRSSRVGYTYFLHPTNKVLSETAEERLQAIKEFTELGSGF 963

Query: 612  QLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHS--VQV 669
            ++A RD+ IRG G + G+QQ G + +VG DL+ +ML E+   V E R +     +  +++
Sbjct: 964  KIAMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEA---VNEKRGIKQESETPEIEI 1020

Query: 670  DININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLLK 729
            ++NI+ +LP+ YI + ++ +EI  +  ++  ++   LM   + L  ++   P  +E LL 
Sbjct: 1021 ELNIDAYLPTSYIPNEQSKIEIYKKLRQIETEN--ELMDIKDELIDRFNDYPVEVERLLD 1078

Query: 730  KLYLRRMAADIGINRIYSSGKTV 752
             + +R  A  +G+ RI  +GK +
Sbjct: 1079 IVEIRIHALHVGVTRIKDTGKAI 1101


>H9UJ40_SPIAZ (tr|H9UJ40) Transcription-repair coupling factor Mfd OS=Spirochaeta
            africana (strain ATCC 700263 / DSM 8902 / Z-7692)
            GN=Spiaf_1471 PE=4 SV=1
          Length = 1134

 Score =  467 bits (1201), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 252/610 (41%), Positives = 396/610 (64%), Gaps = 15/610 (2%)

Query: 139  LRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYA-DGMAKLPVKQSSKMLYRYC 197
            L  GD VVH   GIG F GI+    +      +Y+ +EYA D    +P++Q + ++ RY 
Sbjct: 470  LEPGDLVVHVNYGIGRFRGIQR--IRAGGNERDYIHLEYAGDEFIYIPIEQVN-LIQRY- 525

Query: 198  LPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPYP-KSPAM 256
            +  +   P+ L K+   S WE RK+K + +++ +   L++LY  R + R   +P  +   
Sbjct: 526  IGQQGSAPR-LDKIGGKS-WENRKSKVRRSVEDLAERLVQLYSRRKQARGYAFPPDTDWQ 583

Query: 257  AEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAIRCVVSAK 316
             EF A FPYE T DQ +   +V+ D+ E+ +PMDRL+CGDVGFGKTE+ALRA    V+A 
Sbjct: 584  LEFEASFPYEETLDQLRCIEEVKADM-EQPSPMDRLVCGDVGFGKTEIALRAAFKSVTAG 642

Query: 317  KQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKSGELDIIV 376
            KQ  +LAPT +LA+QHF+ + ER A +P I+ G+LSRF T A++++ +  +KSGE+D+++
Sbjct: 643  KQVALLAPTTILAEQHFENLEERLARFP-IRTGMLSRFVTPAQQKKVIAGLKSGEIDLVI 701

Query: 377  GTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPRTLYLALT 436
            GTH +L   V + +LGL+VVDEEQRFGVK KE++   KT+VD LTLSATPIPRTL+++L 
Sbjct: 702  GTHRILSRDVEFRDLGLIVVDEEQRFGVKHKERLKEMKTTVDSLTLSATPIPRTLHMSLL 761

Query: 437  GFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEVMEF 496
              RD S++ TPP  R+PI+T +  F ++ V +AI+ E++RGGQV+++  R++ LE V +F
Sbjct: 762  KIRDMSVLQTPPTNRMPIETVIREFDEDIVAAAIRKEIERGGQVYFLHNRVETLEYVRKF 821

Query: 497  LEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNANTIIVQDV 556
            +E+  P+V + + HG+  + QLED M +F  G  ++L++T+I+E+G+DI N NTII+   
Sbjct: 822  IEKLVPEVMVDVAHGQMTAHQLEDIMHRFIHGAFQVLVATSIIENGIDIPNVNTIIIDRA 881

Query: 557  QQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQGFQLAER 616
              FG++QLYQLRGRVGR+D+ AYAYLLYP+   LS+ A++RL  + +  ELG GF++A +
Sbjct: 882  DNFGISQLYQLRGRVGRSDRSAYAYLLYPEDRPLSEIAMKRLQVISDHTELGSGFKVAMK 941

Query: 617  DMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQVDININPH 676
            D+ +RG G + G QQ+GD+ +VG DL+  +L E++ +++      +    V +++     
Sbjct: 942  DLEVRGAGNLLGPQQSGDILSVGFDLYLRLLDEAIRRLQSEGDY-IEDQEVYLELEYTGF 1000

Query: 677  LPSEYINHLENPMEIINEAERVAEKDTWS-LMQFTENLRRQYGKEPRPMEVLLKKLYLRR 735
            +P EYI+   +PME +   +++A  +T + L   T  L  ++G  P  +  LL    +R 
Sbjct: 1001 IPDEYID---DPMEKMEVYKKIASINTDTELATVTTELEDRFGPLPDEVHSLLSLAEIRI 1057

Query: 736  MAADIGINRI 745
            +   + I+ +
Sbjct: 1058 ICRRLHISSL 1067


>R6Z7N9_9ACTN (tr|R6Z7N9) Transcription-repair coupling factor OS=Collinsella sp.
            CAG:398 GN=BN642_00852 PE=4 SV=1
          Length = 1221

 Score =  466 bits (1200), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 253/642 (39%), Positives = 401/642 (62%), Gaps = 19/642 (2%)

Query: 137  YTLRNGDYVVHKKVGIGMFIGI-KMDVPKNSAEPTEYVFIEYADG-MAKLPVKQSSKMLY 194
            +  + GDYVVH   GI  F  I + +V   + +  +Y  +EYADG    +P++Q+ + + 
Sbjct: 540  FPFKPGDYVVHATHGIAHFASIVRQEV---AGKERDYFLLEYADGDKLYVPLEQADR-IS 595

Query: 195  RYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHR--LKQRRPPYPK 252
            RY  P+  + P+ L++LN T+ W +   K + + +K+  DL++LY  R  +     P P 
Sbjct: 596  RYVGPD-GQNPR-LTRLN-TADWSRATKKARKSAKKLAFDLVDLYTRRSSITGVACP-PD 651

Query: 253  SPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAIRCV 312
            +P   E  A FPYEPT DQ  A  D++ D+ E   PMDRL+CGDVGFGKTEVALRA    
Sbjct: 652  TPEQLEMEASFPYEPTHDQLDAISDIKADM-EAPKPMDRLLCGDVGFGKTEVALRAAFKC 710

Query: 313  VSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKSGEL 372
            V + +Q MVL PT +LA+QH+    ERFA +  ++V +LSRF+T  +++  L +   G+L
Sbjct: 711  VDSGRQVMVLCPTTILAQQHYQTFFERFAPF-GVEVEVLSRFRTPGQQKRALAAFAEGKL 769

Query: 373  DIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPRTLY 432
            D++VGTH LL + V  +NLGL+++DEEQRFGV+ KE++   +  +DVLTLSATPIPRT+ 
Sbjct: 770  DVLVGTHRLLSSDVNPANLGLVIIDEEQRFGVQHKEQLKNLREQIDVLTLSATPIPRTMQ 829

Query: 433  LALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKGLEE 492
            +A++G RD SLITTPP  R P+  H+  +  + V +AI+ EL R GQV+YV  R+K +++
Sbjct: 830  MAISGVRDMSLITTPPTGRRPVIVHVGEYDPDVVSAAIRLELGRKGQVYYVSNRVKTIDD 889

Query: 493  VMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNANTII 552
             ++ + E+ P+  + + HGK   +++ED M  F++G I +L++T I+ESG+D    NT+I
Sbjct: 890  AVDRVHEAVPEARVGVAHGKMSPREVEDVMIDFSMGRIDVLVATTIIESGIDNPRTNTLI 949

Query: 553  VQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQGFQ 612
            ++D Q+ GLAQLYQL+GRVGR+  +AYAY ++P +  L+ +A ERL+AL E +ELG G +
Sbjct: 950  IEDSQRLGLAQLYQLKGRVGRSATQAYAYFMFPGELPLTQEATERLTALSEFQELGSGMR 1009

Query: 613  LAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQVDIN 672
            +A RD+ IRG G++ G +Q G++ +VG DLF +ML +++++        V   SV +++ 
Sbjct: 1010 IAMRDLEIRGAGSLVGAEQHGNLSSVGFDLFTQMLGQAVAEARGETSGEVEVASVAINLP 1069

Query: 673  INPHLPSEYINHLENPMEIINEAERVAEKDTWSLM-QFTENLRRQYGKEPRPMEVLLKKL 731
             + +L  EY+  ++  + +     +VA  DT + + +       +YG+ P     L  + 
Sbjct: 1070 ADYYLDEEYLPEVDRRVLVYR---KVAAADTLAAVDEAQRECEDRYGELPLAARNLFDRA 1126

Query: 732  YLRRMAADIGINRI-YSSGKTVFMKANITKKVFKMMTDSMTS 772
             LR  A  +G+  I  S+G+ V+   ++ K V   + D + +
Sbjct: 1127 RLRIRAERLGLESIALSAGRLVYQGVDVPKAVAFDLRDRLGA 1168


>B9DLC6_STACT (tr|B9DLC6) Putative transcription-repair coupling factor
            OS=Staphylococcus carnosus (strain TM300) GN=mfd PE=4
            SV=1
          Length = 1172

 Score =  466 bits (1199), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 256/623 (41%), Positives = 399/623 (64%), Gaps = 27/623 (4%)

Query: 139  LRNGDYVVHKKVGIGMFIGIKM----DVPKNSAEPTEYVFIEYADGMAKL--PVKQSSKM 192
            L+ GDYVVH   G+G ++G++     DV ++      Y+ I+Y  G  +L  PV Q  ++
Sbjct: 497  LKIGDYVVHVHHGVGRYLGVETLEVGDVHRD------YIKIQYK-GTDQLFVPVDQMDQV 549

Query: 193  LYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY-P 251
              +  + +E+K P+ L+KL  T  W+K K K + +++ +  +L+ELY  R   +   Y  
Sbjct: 550  --QKYVASEDKTPR-LNKLGGTE-WKKTKAKVQQSVEDIADELIELYREREMAQGYQYGA 605

Query: 252  KSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAIRC 311
             S    EF   FPY+ T DQ ++ ++++ D+ E+E PMDRL+CGDVG+GKTEVALRA   
Sbjct: 606  DSEQQHEFEMDFPYDLTADQSKSIVEIKDDM-EKERPMDRLLCGDVGYGKTEVALRAAFK 664

Query: 312  VVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKSGE 371
             V   KQ   L PT +LA+QH++ + ER   +P + + L+SRF+T  E +E  + ++ G 
Sbjct: 665  AVMEGKQVAFLVPTTILAQQHYETLIERMQDFP-VNIELMSRFRTPKEVKETKKGLEDGT 723

Query: 372  LDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPRTL 431
            +DI+VGTH LL   V Y +LGLLVVDEEQRFGV+ KE+I + KT+VDVLTL+ATPIPRTL
Sbjct: 724  VDIVVGTHKLLAKDVKYKDLGLLVVDEEQRFGVRHKERIKSLKTNVDVLTLTATPIPRTL 783

Query: 432  YLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKGLE 491
            ++++ G RD S+I TPP  R P++T++   +   +  A++ EL RGGQ FY+  +++ + 
Sbjct: 784  HMSMLGVRDLSVIETPPENRFPVQTYVLEQNSNFIKEALERELSRGGQAFYLYNKVQSIY 843

Query: 492  EVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNANTI 551
            E  E L+   P+  I + HG+   ++LEDTM  F  GE  IL++T I+E+G+D+ NANT+
Sbjct: 844  EKKEQLQMLMPEANIGVAHGRMTERELEDTMIGFVDGEYDILVTTTIIETGVDVPNANTL 903

Query: 552  IVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQGF 611
            I++D  +FGL+QLYQLRGRVGR+ +  YAY L+P   +LS+ A ERL A++E  ELG GF
Sbjct: 904  IIEDADRFGLSQLYQLRGRVGRSSRVGYAYFLHPTNKVLSETAEERLQAIKEFTELGSGF 963

Query: 612  QLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHS--VQV 669
            ++A RD+ IRG G + G+QQ G + +VG DL+ +ML E+   V E R +     +  +++
Sbjct: 964  KIAMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEA---VNEKRGIKEETTTPEIEI 1020

Query: 670  DININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLLK 729
            D+N++ +LP+EYI + ++ +EI  +  ++  ++   LM   + L  ++ + P  +E LL 
Sbjct: 1021 DLNMDVYLPTEYIPNEQSKIEIYKKLRQIENEE--QLMDIKDELIDRFNEYPIQVERLLD 1078

Query: 730  KLYLRRMAADIGINRIYSSGKTV 752
             + +R  A ++G+  I  +GK V
Sbjct: 1079 IVEMRIHALNVGVLHIKDTGKAV 1101


>R6MMT9_9FIRM (tr|R6MMT9) Transcription-repair coupling factor OS=Firmicutes
            bacterium CAG:41 GN=BN647_01415 PE=4 SV=1
          Length = 1169

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 251/617 (40%), Positives = 391/617 (63%), Gaps = 16/617 (2%)

Query: 142  GDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEY--ADGMAKLPVKQSSKMLYRYCLP 199
            GDYVVH+  GIG ++G K  V     +  +Y+ I+Y   D +  +P+ Q + +LY+Y + 
Sbjct: 498  GDYVVHQTHGIGQYMGTKKMVVGGITK--DYLKIQYQGTDSLY-IPIDQLN-LLYKY-VG 552

Query: 200  NENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPYPK-SPAMAE 258
            N +KK K L+KL  ++ W K K + K + +++   L+ LY  R K +   Y + +P   +
Sbjct: 553  NTDKKLK-LNKLG-SNEWNKTKQRVKQSTEELAKKLVALYAEREKAKGFAYSEDTPWQRD 610

Query: 259  FTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAIRCVVSAKKQ 318
            F   FPY+ T DQ ++  +V+ D+ E + PMDRL+CGDVGFGKTE+ALRA    V   KQ
Sbjct: 611  FEDTFPYQETDDQLRSIEEVKGDM-ESQKPMDRLLCGDVGFGKTEIALRAAFKAVGDSKQ 669

Query: 319  AMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKSGELDIIVGT 378
               L PT +LA QH++   +R   +P IKV +LSRF+T +E++  L+ +K+GE+DII+GT
Sbjct: 670  VAYLCPTTILAMQHYETFLKRMESFP-IKVEMLSRFRTASEQKRILKKLKTGEIDIIIGT 728

Query: 379  HSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPRTLYLALTGF 438
            H +L   + + +LGLL++DEEQRFGV  KE++   K ++DVLT++ATPIPRTL++A+TG 
Sbjct: 729  HRILSKDLEFKDLGLLIIDEEQRFGVAHKERLKELKQNIDVLTMTATPIPRTLHMAMTGV 788

Query: 439  RDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEVMEFLE 498
            RD S+++ PP  R P++T++   +   +  A++ EL RGGQVFY+  R++G+    E++ 
Sbjct: 789  RDMSVLSEPPENRYPVQTYVLEDNPAVIADAVRNELSRGGQVFYLYNRVQGIYRKAEWIR 848

Query: 499  ESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNANTIIVQDVQQ 558
              FPD+ +A+GHGK    +LED M     G+  +L+ T I+E+GLDI NANTII+++  +
Sbjct: 849  SMFPDITVAVGHGKMKEDELEDIMYDMVNGKTDVLVCTTIIETGLDIPNANTIIIENADK 908

Query: 559  FGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQGFQLAERDM 618
             GL+QLYQLRGRVGR+++ AYAYL Y    +LSD A +RL A++E  E G GF++A RD+
Sbjct: 909  MGLSQLYQLRGRVGRSNRAAYAYLTYHRDKILSDIASKRLRAVKEFTEFGSGFKIAMRDL 968

Query: 619  GIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQVDININPHLP 678
             IRG G I G +Q G +  VG D++ ++L ES+ + +  ++  V    V +DINI+ +LP
Sbjct: 969  EIRGAGNILGPEQHGHMDAVGYDMYCKLLKESVDEAQGIKIDDV--QDVAIDINIDAYLP 1026

Query: 679  SEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLLKKLYLRRMAA 738
              YI +    ++I  +   +  +D     +  + L  ++G  PR ++ +++   L+  A 
Sbjct: 1027 ESYIRNHNQRIDIYKKIAAIETED--DKFEIEDELIDRFGDIPRAVQNIIEVASLKTYAK 1084

Query: 739  DIGINRIYSSGKTVFMK 755
            + GI  I  SG  + MK
Sbjct: 1085 ECGIYEIAQSGDNLLMK 1101


>R9L467_9BACL (tr|R9L467) Transcription-repair coupling factor OS=Paenibacillus
            barengoltzii G22 GN=C812_04364 PE=4 SV=1
          Length = 1174

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 262/654 (40%), Positives = 402/654 (61%), Gaps = 26/654 (3%)

Query: 111  QQQRGLQKLKGERVGKDGNFSYKVDPYT-LRNGDYVVHKKVGIGMFIGIKMDVPKNSAEP 169
            Q+QR     K  RV K  + + ++  YT L+ GDYVVH+  GIG ++GI     +     
Sbjct: 465  QKQR-----KARRVVKSMDNAERIKSYTELKVGDYVVHQNHGIGKYMGI--GTLEVGGIH 517

Query: 170  TEYVFIEYADG-MAKLPVKQSSKMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAI 228
             +Y+ I YA G    +P++Q   M+ +Y + +E+K+PK + KL     W + K K + ++
Sbjct: 518  KDYMHILYAGGDKLSVPIEQID-MIQKY-VGSEDKEPK-IYKLGGNE-WNRVKNKVRSSV 573

Query: 229  QKMVVDLMELYLHRLKQRRPPYP---KSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTER 285
            Q +  DL++LY  R  Q  P Y     +P   EF A FPYE TPDQ +A  +++KD+ E+
Sbjct: 574  QNIADDLIKLYAER--QAAPGYAFEKDTPEQQEFEAMFPYEETPDQLRAIQEIKKDM-EQ 630

Query: 286  ETPMDRLICGDVGFGKTEVALRAIRCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPD 345
              PMDRL+CGDVG+GKTEVA+RA        KQ  VL PT +LA+QH++   ERFA YP 
Sbjct: 631  SRPMDRLLCGDVGYGKTEVAIRAAFKAAIEGKQVAVLVPTTILAQQHYETFRERFAGYP- 689

Query: 346  IKVGLLSRFQTKAEKEEHLESIKSGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVK 405
            I +  LSRF+++ E+ E ++ I+ G +DI++GTH +L   +V+ +LGLL+VDEEQRFGV 
Sbjct: 690  INIQTLSRFRSRKEQNETIKGIRQGTVDIVIGTHRILSQDLVFKDLGLLIVDEEQRFGVT 749

Query: 406  QKEKIATFKTSVDVLTLSATPIPRTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEK 465
             KEK+   KT+VDVLTL+ATPIPRTL++++ G RD S+I TPP  R P++T++   S+  
Sbjct: 750  HKEKLKKLKTNVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEHSQSL 809

Query: 466  VISAIKYELDRGGQVFYVLPRIKGLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKF 525
            V  AI+ E+ RGGQ++Y+  R++G+ E+   +    P+  + +GHG+   ++LE T+  F
Sbjct: 810  VREAIEREMARGGQIYYLYNRVQGIHEIAAQISMLVPEARVVVGHGQMSEQELEKTILDF 869

Query: 526  ALGEIKILISTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYP 585
              GE  +L+ST+I+E+G+DI N NT+IV D  + GL+QLYQLRGRVGR+++ AYAY  Y 
Sbjct: 870  LDGEYDVLVSTSIIETGVDIPNVNTLIVHDADKMGLSQLYQLRGRVGRSNRIAYAYFTYQ 929

Query: 586  DKNLLSDQALERLSALEECRELGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFE 645
                L++ A +RL +++E  ELG GF++A RD+ IRG G + G +Q G + +VG DL+ +
Sbjct: 930  KDKSLTEVAEKRLQSIKEFTELGSGFKIAMRDLAIRGAGNLLGAEQHGFIASVGFDLYSQ 989

Query: 646  MLFESLSKVEEHRVVAVP----YHSVQVDININPHLPSEYINHLENPMEIINEAERVAEK 701
            ML E + K +   +   P      +  +D+ I+ +LPS+YI      +EI  +   V   
Sbjct: 990  MLAEEIQKRKITMLGETPPAEATWNTTIDLGIDAYLPSDYIYDSIQKIEIYKKTASVQTF 1049

Query: 702  DTWSLMQFTENLRRQYGKEPRPMEVLLKKLYLRRMAADIGINRIYSSGKTVFMK 755
            D   + +  + L  ++G+ P  ++ LL    ++      GI  +   G+ V +K
Sbjct: 1050 D--DVAELEDELLDRFGELPDAVQNLLAVARVKLYGKQYGIESMTLRGEEVTIK 1101


>K4LLL5_THEPS (tr|K4LLL5) Transcription-repair-coupling factor Mfd
            OS=Thermacetogenium phaeum (strain ATCC BAA-254 / DSM
            12270 / PB) GN=mfd PE=4 SV=1
          Length = 1165

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 271/625 (43%), Positives = 383/625 (61%), Gaps = 24/625 (3%)

Query: 139  LRNGDYVVHKKVGIGMFIGI---KMDVPKNSAEPTEYVFIEYADG-MAKLPVKQSSKMLY 194
            L  GD+VVH   GIG ++GI   +MD  K      +Y+ + YA G    +PV Q   ++ 
Sbjct: 500  LTPGDFVVHIHHGIGRYLGICEKEMDGKKR-----DYLELAYAGGDRLYVPVDQVD-LIS 553

Query: 195  RYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPYPKSP 254
            RY  P E   P+ LS+L  T  W + K + K  ++++  DL+ LY  R   R P Y  SP
Sbjct: 554  RYGGP-EGAVPR-LSRLGGTD-WNRLKQRVKKRLRELAEDLIALYSER--SRTPGYAFSP 608

Query: 255  AMA---EFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAIRC 311
                  EF   FPYE TPDQ QA  +V+ D+ E+  PMDRLICGDVGFGKTEVA+RA   
Sbjct: 609  DTVWQREFEELFPYEETPDQLQAIKEVKADM-EKPRPMDRLICGDVGFGKTEVAIRAAFK 667

Query: 312  VVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKSGE 371
             V   KQ  VL PT VLA+QH+    ERF+ YP I+V +LSRF+T AE++  +  +  G 
Sbjct: 668  AVQDGKQVAVLVPTTVLAQQHYLTFKERFSRYP-IRVEMLSRFRTPAEQKAIVADLGKGL 726

Query: 372  LDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPRTL 431
            +D+I+GTH LL   VV+ +LGLLV+DEEQRFGV  KEKI   KTSVDVLT++ATPIPRTL
Sbjct: 727  VDVIIGTHRLLSADVVFKDLGLLVIDEEQRFGVAHKEKIKMLKTSVDVLTMTATPIPRTL 786

Query: 432  YLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKGLE 491
             ++L G RD S+I TPP +R+P++T++  +S + V  AI  E+ RGGQVFYV  R++ + 
Sbjct: 787  QMSLGGVRDLSVIETPPEDRLPVQTYVLEYSPDLVRDAILREIQRGGQVFYVHNRVETIA 846

Query: 492  EVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNANTI 551
             V  +L+E  P+    + HG+    +LE+ M +F       LI T I+ESGLD  NANT+
Sbjct: 847  RVAHYLQELVPEATFRVAHGQMREDELEEVMWEFLNRRFDCLICTTIIESGLDFPNANTL 906

Query: 552  IVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQGF 611
            IV++   FGLAQLYQLRGRVGR+++ AYAY  +    +LS+QA +RL A++E  E G GF
Sbjct: 907  IVENADSFGLAQLYQLRGRVGRSNRLAYAYFTFRGDKVLSEQAEKRLRAIQEFTEFGSGF 966

Query: 612  QLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQVDI 671
            +LA RD+ IRG G I G +Q G +  VG DL+  +L E++ +V+   V          D+
Sbjct: 967  KLALRDLEIRGAGNILGPEQHGHMAAVGFDLYNRLLQEAVQEVKGKPVPERKAAPPLFDL 1026

Query: 672  NINPHLPSEYINHLENPMEIINEAERVA-EKDTWSLMQFTENLRRQYGKEPRPMEVLLKK 730
             ++ +LP  YI    +P + +    R+A  +DT  + +  E +R ++G+ P P   L   
Sbjct: 1027 RVDSYLPDSYIG---DPRQKVEIYRRLALAEDTAGVEELAEEVRDRFGEMPEPAVNLFDL 1083

Query: 731  LYLRRMAADIGINRIYSSGKTVFMK 755
              +R  A ++G+  +  +G T+F++
Sbjct: 1084 ARVRARARELGMREVQHAGYTLFLR 1108


>R5P401_9FIRM (tr|R5P401) Transcription-repair coupling factor OS=Eubacterium sp.
            CAG:603 GN=BN730_00036 PE=4 SV=1
          Length = 1181

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 259/612 (42%), Positives = 384/612 (62%), Gaps = 20/612 (3%)

Query: 139  LRNGDYVVHKKVGIGMFIGI-KMDVPKNSAEPTEYVFIEYADGMAKLPVKQSSKMLYRYC 197
            L  GDYVVH+  G+G++ GI K++V K      +Y+ IEYA G + L +  +   L +  
Sbjct: 507  LNIGDYVVHENHGLGVYRGIEKIEVDK---VIKDYIKIEYA-GNSNLYILATQLDLIQKY 562

Query: 198  LPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY-PKSPAM 256
               + K PK L+KL  T  W K KTK K A++ +  DL+E+Y  R  Q+   + P +   
Sbjct: 563  SGADAKVPK-LNKLG-TQDWVKTKTKVKGAVKDIAKDLVEIYSARQNQKGYEFSPDNIWQ 620

Query: 257  AEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAIRCVVSAK 316
             EF   FPYE T DQ  A  D +KD+ E    MDRL+CGDVG+GKTE+A+RA    V   
Sbjct: 621  KEFEEMFPYEETNDQLAAIEDTKKDM-ESSRIMDRLVCGDVGYGKTEIAIRAAFKAVQDG 679

Query: 317  KQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKSGELDIIV 376
            KQ  VL PT +LA+QH++  S+R   YP ++V +LSRF+T +  ++ +  +K+GE+DI++
Sbjct: 680  KQVAVLVPTTILAQQHYNTFSQRMKDYP-VRVDMLSRFRTASGAKDTINGLKTGEVDIVI 738

Query: 377  GTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPRTLYLALT 436
            GTH LL   +V+ +LGLL+VDEEQRFGV  KEKI   K  VDVLTL+ATPIPRTL+++L 
Sbjct: 739  GTHRLLSKNIVFKDLGLLIVDEEQRFGVTHKEKIKAMKKEVDVLTLTATPIPRTLHMSLV 798

Query: 437  GFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEVMEF 496
            G RD S++  PP +R+PI+T++  +  E +  AI  E+ RGGQV+YV  R+  ++EV   
Sbjct: 799  GIRDMSVLEEPPVDRLPIQTYVMEYDDEMIREAINREMSRGGQVYYVYNRVNDIDEVASR 858

Query: 497  LEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNANTIIVQDV 556
            +    PD  +   HG+   +QLE  M  F  GEI +L+ST I+E+GLDI N NTII+ D 
Sbjct: 859  IARLVPDANVVFAHGQMNERQLEQIMYDFIEGEIDVLVSTTIIETGLDISNVNTIIIHDA 918

Query: 557  QQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQGFQLAER 616
             +FGL+QLYQLRGRVGR+++ +YA+L+Y    +L + A +RL A+ E  ELG GF++A R
Sbjct: 919  DKFGLSQLYQLRGRVGRSNRTSYAFLMYKRDKMLKEVAEKRLQAIREFTELGSGFKIAMR 978

Query: 617  DMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQVDININPH 676
            D+ IRG G + G +Q G +  VG DL+ ++L E++S VE+   V   + + ++D+N++  
Sbjct: 979  DLEIRGAGNVLGAEQHGHMAAVGYDLYCKLLNEAVS-VEKGEQVRDDFET-KIDLNVDAF 1036

Query: 677  LPSEYINHLENPMEIINEAERVA---EKDTWSLMQFTENLRRQYGKEPRPMEVLLKKLYL 733
            +P  YI    N M+ +N  +++A    ++ +S MQ  + L  ++G+ P+ +  LL    +
Sbjct: 1037 IPPSYI---RNEMQKLNTYKKIASITSEEEYSDMQ--DELIDRFGEMPKNVMNLLAIALI 1091

Query: 734  RRMAADIGINRI 745
            + MA    I  I
Sbjct: 1092 KGMAHKAWITEI 1103


>G2MU69_9THEO (tr|G2MU69) Transcription-repair coupling factor
            OS=Thermoanaerobacter wiegelii Rt8.B1 GN=Thewi_2571 PE=4
            SV=1
          Length = 1169

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 256/628 (40%), Positives = 387/628 (61%), Gaps = 19/628 (3%)

Query: 133  KVDPYT-LRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADG-MAKLPVKQSS 190
            K+  +T L  G YVVH   GIG + GI+    K      +Y+ I YA G    +PV+Q  
Sbjct: 494  KIKSFTELEVGSYVVHVNYGIGKYEGIEK--IKVDGIIRDYLKIIYAGGDTLFVPVEQLD 551

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
             ++ +Y  P +N  P  L+KL   S W + K K K A++ +  DL++LY  R   +   +
Sbjct: 552  -LVQKYVGPTDN--PPKLNKLG-GSEWLRAKRKAKKAVEDLAKDLIQLYAKRQMVKGHAF 607

Query: 251  -PKSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
             P +P   EF  QFPYE T DQ +   ++++D+ E++ PMDRL+CGDVG+GKTEVALRA 
Sbjct: 608  SPDTPWQKEFEEQFPYEETEDQLRCIKEIKEDM-EKDRPMDRLLCGDVGYGKTEVALRAA 666

Query: 310  RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKS 369
               V+  KQ   L PT +LA QH+    ERF  +P +K+ +LSRF+T  E+ + ++ +  
Sbjct: 667  FKAVADGKQVAFLCPTTILAYQHYTNFIERFKEFP-VKIEMLSRFRTPKEQAQIIKGLAE 725

Query: 370  GELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPR 429
            G +DIIVGTH LL N V + +LGLL++DEEQRFGV  KEKI   K ++DVLTLSATPIPR
Sbjct: 726  GTIDIIVGTHRLLQNDVKFKDLGLLIIDEEQRFGVVHKEKIKKLKENIDVLTLSATPIPR 785

Query: 430  TLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKG 489
            TL+++L G RD S++  PP +R P++T++  F++E +  AI  E+ RGGQV++V  R+ G
Sbjct: 786  TLHMSLIGIRDMSVLENPPEDRFPVETYVMEFNEELIKDAILREIGRGGQVYFVYNRVNG 845

Query: 490  LEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNAN 549
            +E++   +++  P   +A+ HG+    QLE  M  F  GE  +L+ST I+E+GLDI N N
Sbjct: 846  IEKMASLVKDLVPGCRVAVAHGQMEESQLEKVMIDFLNGEYDVLVSTTIIETGLDIPNVN 905

Query: 550  TIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQ 609
            TIIV D  + GL+QLYQLRGRVGR+++ AYAY  Y    +LS+ A +RL A++E  E G 
Sbjct: 906  TIIVYDADKLGLSQLYQLRGRVGRSNRLAYAYFTYRKDKVLSEVAEKRLEAIKEFTEFGS 965

Query: 610  GFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSV-- 667
            GF++A RD+ IRG G + G +Q G +  +G DL+ ++L E++  ++       P   +  
Sbjct: 966  GFKIAMRDLEIRGAGNLLGAEQHGHINAIGYDLYLKLLEEAIRNLKGE----APKEEITT 1021

Query: 668  QVDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVL 727
             +DI +N ++ S YI      +E+  +   +  ++   +++ +E L  ++G  P+P+E L
Sbjct: 1022 TIDIKVNAYIDSSYIEDENLRLEMYKKIASIESRE--DMIEISEELVDRFGDYPKPVEAL 1079

Query: 728  LKKLYLRRMAADIGINRIYSSGKTVFMK 755
            L+  YL+ +A+ + I  I   G  V +K
Sbjct: 1080 LEIAYLKAIASQLYITEITEKGNVVILK 1107


>H7EMA2_9SPIO (tr|H7EMA2) Transcription-repair coupling factor OS=Treponema
            saccharophilum DSM 2985 GN=TresaDRAFT_0324 PE=4 SV=1
          Length = 1188

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 254/630 (40%), Positives = 395/630 (62%), Gaps = 25/630 (3%)

Query: 131  SYKVDPYT-LRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYA-DGMAKLPVKQ 188
            S  +D +  L  GDYVVH   GIG F GI+     +S    +++ IEYA +    +P++Q
Sbjct: 516  SEAIDTFVELEPGDYVVHVNYGIGRFKGIQR--LASSESERDFIKIEYAGEEFLYIPLEQ 573

Query: 189  SSKMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRP 248
             + ++ RY + N    P+ L  +   S WE RK K K A+++M   L+ LY  R   R  
Sbjct: 574  LN-LVQRY-IGNGGDSPR-LDTIGGKS-WENRKGKVKKAVEEMAEKLVTLYGKRKVSRGF 629

Query: 249  PYPKSPAM-AEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALR 307
             + + P + AEF A FPYE TPDQ     +++ D+ ER  PMDRL+CGDVG+GKTEVA+R
Sbjct: 630  AFARWPDLEAEFDAAFPYEDTPDQCSVTREIKDDM-ERPVPMDRLLCGDVGYGKTEVAMR 688

Query: 308  AIRCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESI 367
            A    V +KKQ   LAPT +LA+QHF+   ERFA +P + +  LSRF    E++E L ++
Sbjct: 689  AAFKAVLSKKQVAFLAPTTILAEQHFETCVERFANFP-VVIKQLSRFVAPKERKETLAAL 747

Query: 368  KSGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPI 427
             +G++DIIVGTH LL   VV+ +LGL+++DEEQRFGVK KE++ T +T++D L++SATPI
Sbjct: 748  AAGQVDIIVGTHRLLQKDVVFRDLGLMIIDEEQRFGVKDKERLKTMRTNIDCLSMSATPI 807

Query: 428  PRTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRI 487
            PRTL+++L   RD SL+TTPP  R PI+T + ++  EKV  AI+ E++RGGQVF++  R+
Sbjct: 808  PRTLHMSLLKIRDMSLLTTPPQTRKPIETFVDAYDDEKVARAIRNEVERGGQVFFLHNRV 867

Query: 488  KGLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQN 547
            + L+E    +E   P+V +   HG+  +++L+D   +F +G   +L++T I+E+G+DI N
Sbjct: 868  ETLQETCRTIERLVPEVLVDFAHGQMSAEELDDIFRRFKMGGFHVLVATTIIENGIDIPN 927

Query: 548  ANTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECREL 607
             NTII+     +G++QLYQLRGRVGR+D++A+AYLLYP   +LS+ A++RL A+ +  EL
Sbjct: 928  VNTIIIDRADMYGISQLYQLRGRVGRSDRKAFAYLLYPGNKVLSEVAMKRLQAISDFTEL 987

Query: 608  GQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKV-----EEHRVVAV 662
            G GF++A +DM IRG G + G  Q+GDV +VG D++  +L ++++++     +E R    
Sbjct: 988  GSGFKIAMKDMEIRGAGNLLGRDQSGDVYSVGFDMYVRLLTDAINRLTKEGYKEER---- 1043

Query: 663  PYHSVQVDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPR 722
                V +++  +  +P  Y++ ++  MEI  +   V  K+   L      +  ++G  P 
Sbjct: 1044 ---DVLIELEYSGFIPDTYVHSVQTKMEIYKKVAAVQTKE--ELAGLCLEIEDRFGPIPD 1098

Query: 723  PMEVLLKKLYLRRMAADIGINRIYSSGKTV 752
             +  L+    +R +A  + ++ +   G TV
Sbjct: 1099 EVYSLMSLAEVRIIARRLSVDSLKEKGGTV 1128


>C6J5E9_9BACL (tr|C6J5E9) Transcription-repair coupling factor OS=Paenibacillus sp.
            oral taxon 786 str. D14 GN=POTG_03626 PE=4 SV=1
          Length = 1177

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 260/654 (39%), Positives = 403/654 (61%), Gaps = 26/654 (3%)

Query: 111  QQQRGLQKLKGERVGKDGNFSYKVDPYT-LRNGDYVVHKKVGIGMFIGIKMDVPKNSAEP 169
            Q+QR     K  RV K  + + ++  YT L+ GDYVVH+  GIG ++GI     +     
Sbjct: 468  QKQR-----KARRVAKSMDNAERIKSYTELKVGDYVVHQNHGIGKYMGI--GTLEVGGIH 520

Query: 170  TEYVFIEYADG-MAKLPVKQSSKMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAI 228
             +Y+ I YA G    +P++Q   M+ +Y + +E+K+PK + KL     W + K K + ++
Sbjct: 521  KDYMHILYAGGDKLSVPIEQID-MIQKY-VGSEDKEPK-IYKLGGNE-WNRVKNKVRSSV 576

Query: 229  QKMVVDLMELYLHRLKQRRPPYP---KSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTER 285
            Q +  DL++LY  R  Q  P Y     +P   EF A FPYE TPDQ +A  ++++D+ E+
Sbjct: 577  QNIADDLIKLYAER--QAAPGYAFEKDTPEQQEFEAMFPYEETPDQLRAIEEIKRDM-EQ 633

Query: 286  ETPMDRLICGDVGFGKTEVALRAIRCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPD 345
              PMDRL+CGDVG+GKTEVA+RA        KQ  VL PT +LA+QH++   ERFA YP 
Sbjct: 634  SRPMDRLLCGDVGYGKTEVAIRAAFKAAIEGKQVAVLVPTTILAQQHYETFRERFAGYP- 692

Query: 346  IKVGLLSRFQTKAEKEEHLESIKSGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVK 405
            I +  LSRF+++ E+ E ++ I+ G +DI++GTH +L   +V+ +LGLL+VDEEQRFGV 
Sbjct: 693  INIQTLSRFRSRKEQNETIKGIRQGTVDIVIGTHRILSQDLVFKDLGLLIVDEEQRFGVT 752

Query: 406  QKEKIATFKTSVDVLTLSATPIPRTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEK 465
             KEK+   KT+VDVLTL+ATPIPRTL++++ G RD S+I TPP  R P++T++  +S+  
Sbjct: 753  HKEKLKKLKTNVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYSQSL 812

Query: 466  VISAIKYELDRGGQVFYVLPRIKGLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKF 525
            V  AI+ E+ RGGQ++Y+  R++G+ E+   +    P+  + +GHG+   ++LE T+  F
Sbjct: 813  VREAIEREMARGGQIYYLYNRVQGIHEMAAQISMLVPEARVVVGHGQMSEQELEKTILDF 872

Query: 526  ALGEIKILISTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYP 585
              GE  +L+ST+I+E+G+DI N NT+IV D  + GL+QLYQLRGRVGR+++ AYAY  Y 
Sbjct: 873  LDGEYDVLVSTSIIETGVDIPNVNTLIVHDADKMGLSQLYQLRGRVGRSNRIAYAYFTYQ 932

Query: 586  DKNLLSDQALERLSALEECRELGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFE 645
                L++ A +RL +++E  ELG GF++A RD+ IRG G + G +Q G + +VG DL+ +
Sbjct: 933  KDKSLTEVAEKRLQSIKEFTELGSGFKIAMRDLAIRGAGNLLGAEQHGFIASVGFDLYSQ 992

Query: 646  MLFESLSKVEEHRVVAVP----YHSVQVDININPHLPSEYINHLENPMEIINEAERVAEK 701
            ML E + K +   +   P      +  +D+ I+ +LPS+YI      +EI  +   V  +
Sbjct: 993  MLAEEIQKRKITMLGETPPAEATWNTTIDLGIDAYLPSDYIYDSIQKIEIYKKTASV--Q 1050

Query: 702  DTWSLMQFTENLRRQYGKEPRPMEVLLKKLYLRRMAADIGINRIYSSGKTVFMK 755
                + +  + L  ++G+ P  ++ LL    ++      GI  +   G+ V +K
Sbjct: 1051 TFEDVAELEDELLDRFGELPDAVQNLLAVARVKLYGKQYGIESMTLRGEEVTIK 1104


>F1ZWE5_THEET (tr|F1ZWE5) Transcription-repair coupling factor
            OS=Thermoanaerobacter ethanolicus JW 200
            GN=TheetDRAFT_1634 PE=4 SV=1
          Length = 1169

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 256/628 (40%), Positives = 387/628 (61%), Gaps = 19/628 (3%)

Query: 133  KVDPYT-LRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADG-MAKLPVKQSS 190
            K+  +T L  G YVVH   GIG + GI+    K      +Y+ I YA G    +PV+Q  
Sbjct: 494  KIKSFTELEVGSYVVHVNYGIGKYEGIEK--IKVDGIIRDYLKIIYAGGDTLFVPVEQLD 551

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
             ++ +Y  P +N  P  L+KL   S W + K K K A++ +  DL++LY  R   +   +
Sbjct: 552  -LVQKYVGPTDN--PPKLNKLG-GSEWLRAKRKAKKAVEDLAKDLIQLYAKRQMVKGHAF 607

Query: 251  -PKSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
             P +P   EF  QFPYE T DQ +   ++++D+ E++ PMDRL+CGDVG+GKTEVALRA 
Sbjct: 608  SPDTPWQKEFEEQFPYEETEDQLRCIKEIKEDM-EKDRPMDRLLCGDVGYGKTEVALRAA 666

Query: 310  RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKS 369
               V+  KQ   L PT +LA QH+    ERF  +P +K+ +LSRF+T  E+ + ++ +  
Sbjct: 667  FKAVADGKQVAFLCPTTILAYQHYTNFIERFKEFP-VKIEMLSRFRTPKEQAQIIKGLAE 725

Query: 370  GELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPR 429
            G +DIIVGTH LL N V + +LGLL++DEEQRFGV  KEKI   K ++DVLTLSATPIPR
Sbjct: 726  GTIDIIVGTHRLLQNDVKFKDLGLLIIDEEQRFGVVHKEKIKKLKENIDVLTLSATPIPR 785

Query: 430  TLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKG 489
            TL+++L G RD S++  PP +R P++T++  F++E +  AI  E+ RGGQV++V  R+ G
Sbjct: 786  TLHMSLIGIRDMSVLENPPEDRFPVETYVMEFNEELIKDAILREIGRGGQVYFVYNRVNG 845

Query: 490  LEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNAN 549
            +E++   +++  P   +A+ HG+    QLE  M  F  GE  +L+ST I+E+GLDI N N
Sbjct: 846  IEKMASLVKDLVPGCRVAVAHGQMEESQLEKVMIDFLNGEYDVLVSTTIIETGLDIPNVN 905

Query: 550  TIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQ 609
            TIIV D  + GL+QLYQLRGRVGR+++ AYAY  Y    +LS+ A +RL A++E  E G 
Sbjct: 906  TIIVYDADKLGLSQLYQLRGRVGRSNRLAYAYFTYRKDKVLSEVAEKRLEAIKEFTEFGS 965

Query: 610  GFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSV-- 667
            GF++A RD+ IRG G + G +Q G +  +G DL+ ++L E++  ++       P   +  
Sbjct: 966  GFKIAMRDLEIRGAGNLLGAEQHGHINAIGYDLYLKLLEEAIRNLKGE----APKEEITT 1021

Query: 668  QVDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVL 727
             +DI +N ++ S YI      +E+  +   +  ++   +++ +E L  ++G  P+P+E L
Sbjct: 1022 TIDIKVNAYIDSSYIEDENLRLEMYKKIASIESRE--DMIEISEELVDRFGDYPKPVEAL 1079

Query: 728  LKKLYLRRMAADIGINRIYSSGKTVFMK 755
            L+  YL+ +A+ + I  I   G  V +K
Sbjct: 1080 LEIAYLKAIASQLYITEITEKGNVVILK 1107


>D9SKQ1_CLOC7 (tr|D9SKQ1) Transcription-repair coupling factor OS=Clostridium
            cellulovorans (strain ATCC 35296 / DSM 3052 / OCM 3 /
            743B) GN=Clocel_3803 PE=4 SV=1
          Length = 1173

 Score =  463 bits (1192), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 256/642 (39%), Positives = 401/642 (62%), Gaps = 18/642 (2%)

Query: 139  LRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADG-MAKLPVKQSSKMLYRYC 197
            L+ GDYVVH   GIG++ GIK    +N  +  +Y+ + Y+DG    +PV+Q   ++ +Y 
Sbjct: 505  LKPGDYVVHANHGIGVYKGIKQLEVENVKK--DYLMVSYSDGDTLYVPVEQLD-LIQKY- 560

Query: 198  LPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPYPKSPAMA 257
            + +E K PK ++KL   S W+K KTK + +I ++  DL++LY  R   +   + K     
Sbjct: 561  IGSEGKAPK-ITKLGG-SEWQKAKTKARNSINEIAQDLVKLYATREAVKGYSFSKDTTWQ 618

Query: 258  E-FTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAIRCVVSAK 316
            + F A+FPYE TPDQ  A  +++ D+ E+  PMDRL+CGDVG+GKTEVA+RA    V   
Sbjct: 619  QQFEAEFPYEETPDQISAIEEIKVDM-EKNKPMDRLLCGDVGYGKTEVAMRAAFKAVMDG 677

Query: 317  KQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKSGELDIIV 376
            KQA  L PT +LA+QH+  + +RF  +P + + ++SRF++  +++E L+S+K G +DII+
Sbjct: 678  KQAAFLVPTTILAEQHYKTLKKRFTGFP-VNIDMISRFRSATQQKETLKSLKEGNVDIII 736

Query: 377  GTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPRTLYLALT 436
            GTH +LG  V + +LGLL+VDEEQRFGV  KEKI   K ++DVLTLSATPIPRTL ++LT
Sbjct: 737  GTHKILGKTVQFKDLGLLIVDEEQRFGVSHKEKIKNAKKNIDVLTLSATPIPRTLNMSLT 796

Query: 437  GFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEVMEF 496
            G R  S+I TPP ER P++T++  ++ + +  A+  E++R GQVF+V  R++ + E+ + 
Sbjct: 797  GVRSISVIETPPEERYPVQTYVVEYNDQLIRDAVLREINRKGQVFFVFNRVENIREIADS 856

Query: 497  LEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNANTIIVQDV 556
            L    P+  I + HG+   K+LE+ M  F   E  IL+ST I+E+G+DIQNANT+I+ D 
Sbjct: 857  LAHLIPEARIIVAHGQMAEKELEEVMRAFMNQEYDILVSTTIIETGIDIQNANTMIIYDA 916

Query: 557  QQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQGFQLAER 616
             + GL+QLYQLRGRVGR ++ AYAYL Y    ++++ A +RL A+++  ELG GF++A R
Sbjct: 917  DKMGLSQLYQLRGRVGRTNRIAYAYLTYRKDKIITEVAKKRLKAIKDFTELGSGFKVALR 976

Query: 617  DMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQVDININPH 676
            D+ IRG G + G  Q G +  +G DL+ +ML E   KV +  +   P  +V +++ +N  
Sbjct: 977  DLEIRGAGNVMGSAQHGQMAAIGYDLYCKML-EDTIKVIKGEIDKEPIETV-IEMKVNAF 1034

Query: 677  LPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLLKKLYLRRM 736
            +P+ YI+     +E+  +   +  K    L+  T+ L  ++   P  +  L++  Y+R +
Sbjct: 1035 IPNGYISDETQKIEVYKKIASIETKK--DLLDITDELIDRFSDLPPSVNNLMEISYIRAL 1092

Query: 737  AADIGINRIYSSGKTVFM----KANITKKVFKMMTDSMTSDI 774
            A ++GI  +    K + +    K  ITK++   + D  +  I
Sbjct: 1093 AKNLGIIEVKDKIKEIHLIFENKDKITKEMVNAIIDKYSKHI 1134


>R7I0J1_9CLOT (tr|R7I0J1) Transcription-repair coupling factor OS=Clostridium sp.
            CAG:768 GN=BN776_01913 PE=4 SV=1
          Length = 1119

 Score =  463 bits (1192), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 256/641 (39%), Positives = 401/641 (62%), Gaps = 16/641 (2%)

Query: 139  LRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYAD-GMAKLPVKQSSKMLYRYC 197
            ++ G+YVVH   G+G++ G+     +   +  +Y+ IEYA+     +P +Q + +L RY 
Sbjct: 442  IKEGEYVVHSIHGVGIYKGLSQQ--EIDGQLKDYLTIEYANKDRLHIPAEQIN-LLVRY- 497

Query: 198  LPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY-PKSPAM 256
              +   KPK LS++     WE  KT+ K  ++++  DL+ LY  R  Q+   + P +   
Sbjct: 498  RGSGALKPK-LSRMGGKD-WENTKTRVKKEVEQVAYDLLRLYAKRKMQKGIQFLPDTTWQ 555

Query: 257  AEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAIRCVVSAK 316
             E    F Y  TPDQ +A  DV+ D+ E E PMDRLICGDVGFGKTEVA+R I   V++ 
Sbjct: 556  VEMEEAFEYTETPDQMKAINDVKADM-ESEQPMDRLICGDVGFGKTEVAMRGIFKAVTSG 614

Query: 317  KQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKSGELDIIV 376
            KQ  V+ PT +LA QHF  ISERF  +  + V LLSRF+++ E++E ++ + +GE D++V
Sbjct: 615  KQVAVVVPTTILAFQHFQTISERFKPFG-VNVELLSRFRSQKEQKETVKHLATGECDVVV 673

Query: 377  GTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPRTLYLALT 436
            GTH LL   +++ +LGLLV+DEE RFGV+ KEK+   + ++D++T+SATPIPRTLY++L+
Sbjct: 674  GTHRLLQEGIIFKDLGLLVIDEEHRFGVRHKEKLKQLRENIDIITMSATPIPRTLYMSLS 733

Query: 437  GFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEVMEF 496
            G +D S+I TPP  R+PIKT++  +++  V +AI +ELDR GQVFY+  R++ ++E    
Sbjct: 734  GIKDMSIINTPPKNRLPIKTYVGEWNENMVKNAIIHELDREGQVFYLYNRVETIDEFRMQ 793

Query: 497  LEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNANTIIVQDV 556
            L++  P+  IAIGHG+   K LE  +  FA  E  IL++T I+E+G+DI NANT+I+ + 
Sbjct: 794  LQKLVPNARIAIGHGQMDEKTLEKVIIDFANHEYDILLATTIIENGIDIPNANTMIIHNA 853

Query: 557  QQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQGFQLAER 616
             +FGLAQLYQLRGRVGR+ ++AY Y  Y     ++  A++RL A++E   LG G+Q+A R
Sbjct: 854  DKFGLAQLYQLRGRVGRSQRQAYCYCFYTKSKEITQDAVQRLKAIKEFTTLGSGYQIAMR 913

Query: 617  DMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQVDININPH 676
            D+ IRG G I G +Q G + NVG D + ++L E++ +++    +    +   VDIN+   
Sbjct: 914  DVEIRGVGNILGTKQHGHMVNVGFDTYCQLLEETVQELQGQ--IVDKSNPTIVDINVTAF 971

Query: 677  LPSEYINHLENPMEIINEAERVAE-KDTWSLMQFTENLRRQYGKEPRPMEVLLKKLYLRR 735
            +P E++   E  M    E +R+A+ K    L   TE  + ++ K P  +E L+K + +R 
Sbjct: 972  IPDEWVGSAEQKM---IEYKRLADVKSDIELDYITEEWKDRFAKPPESVENLIKLIKIRL 1028

Query: 736  MAADIGINRIYSSGKTVFMKANITKKVFKMMTDSMTSDIYR 776
             A D+ I+ I  +   + +    ++  +K++  S+ S+I +
Sbjct: 1029 AATDVKISLIRETEDNIRIYTPYSQAEWKIIQRSLPSEILK 1069


>H5XRP8_9FIRM (tr|H5XRP8) Transcription-repair coupling factor Mfd (Precursor)
            OS=Desulfosporosinus youngiae DSM 17734
            GN=DesyoDRAFT_0075 PE=4 SV=1
          Length = 1179

 Score =  463 bits (1192), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 253/619 (40%), Positives = 387/619 (62%), Gaps = 13/619 (2%)

Query: 139  LRNGDYVVHKKVGIGMFIGI-KMDVPKNSAEPTEYVFIEYADGMAKLPVKQSSKMLYRYC 197
            L+ GD+VVH   GIG F GI +++V        +Y  I YA G  +L V      L +  
Sbjct: 504  LKEGDHVVHVHHGIGQFTGIERLEV---GGIAKDYFGIRYA-GEDRLYVPLDQLHLLQKY 559

Query: 198  LPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPYPKSPAM- 256
            L +  +    L KL   S W K K K + A+++M +DL++LY  R   +   + +     
Sbjct: 560  LGSAGETLPKLYKLGG-SEWHKVKKKTRSAVKEMAIDLLKLYAQRESVKGHSFSQDNVWQ 618

Query: 257  AEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAIRCVVSAK 316
             EF  +FPY  TPDQ Q+  DV+ D+  R  PMDRL+CGDVG+GKTEVALRA    V   
Sbjct: 619  TEFEEKFPYIETPDQLQSIADVKSDMM-RPRPMDRLLCGDVGYGKTEVALRAAFKAVMDS 677

Query: 317  KQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKSGELDIIV 376
            KQ  VL PT +LA+QHF+   ERF  YP I + +LSRF+++ E++E ++ +K G +D+IV
Sbjct: 678  KQVAVLVPTTILAQQHFNTFKERFTGYP-ITIEMLSRFRSQKEQKEIIQGLKEGRIDVIV 736

Query: 377  GTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPRTLYLALT 436
            GTH +L   V +++LGLLV+DEEQRFGV  KEK+ T K +VDVLTLSATPIPRTL+++L 
Sbjct: 737  GTHRILSEAVKFNDLGLLVIDEEQRFGVAHKEKLKTLKGNVDVLTLSATPIPRTLHMSLV 796

Query: 437  GFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEVMEF 496
            G RD S+I TPP  R P++T+++ F  + V  AI+ E+ RGGQVFYV  R++ +++V  F
Sbjct: 797  GVRDMSVIETPPEGRYPVQTYVTEFRADVVREAIRREIQRGGQVFYVHNRVEDMDQVTHF 856

Query: 497  LEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNANTIIVQDV 556
            L E  P+ +  + HG+   + LE  M  F   E+ +L+ST I+E+GLD+ NANT+I+ + 
Sbjct: 857  LNELVPEAKFGVAHGQMRERDLERVMLAFLEHEMDVLVSTTIIETGLDMPNANTLIIDEA 916

Query: 557  QQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQGFQLAER 616
             +FGL+QLYQLRGRVGR++++AY YLLY  + +L++ A +RL+A+ E  E G GF++A R
Sbjct: 917  DRFGLSQLYQLRGRVGRSNRKAYTYLLYKPQKVLTEVAEKRLAAIREFTEFGAGFKIAMR 976

Query: 617  DMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQVDININPH 676
            D+ IRG G + G QQ G +  VG +++ +ML E++ +++   +  V   S++  + ++  
Sbjct: 977  DLEIRGAGNLIGAQQHGHLAAVGFEMYSQMLKEAVQELKGETIEEVVEPSIE--LQVDAF 1034

Query: 677  LPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLLKKLYLRRM 736
            LP +Y+   +    +      V  +D  S M   + L  ++G  PR +E L++ + ++ +
Sbjct: 1035 LPDDYVADRQTKATLYQRLAMVRNEDQLSEM--LDELVDRFGTPPREVEQLVEIIRIKLL 1092

Query: 737  AADIGINRIYSSGKTVFMK 755
            A+ + I +I  + + V ++
Sbjct: 1093 ASSLKIEQIQQAKQYVNLR 1111


>R6MUX3_9CLOT (tr|R6MUX3) Transcription-repair coupling factor OS=Clostridium sp.
            CAG:253 GN=BN565_01824 PE=4 SV=1
          Length = 1199

 Score =  463 bits (1192), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 259/609 (42%), Positives = 384/609 (63%), Gaps = 12/609 (1%)

Query: 139  LRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSS-KMLYRYC 197
            L  GDYVVH++ G+G++ GI+     N  +  +++ IEY DG   L V  S   +L +Y 
Sbjct: 504  LNVGDYVVHEEHGLGIYKGIEKIRVNNVTK--DFIKIEYGDG-GNLYVPVSGLDVLQKYA 560

Query: 198  LPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPYPKSPAM- 256
              +  KKPK L+KLN +S W+K K++ K A+ ++  +L+ LY  R + +   + K     
Sbjct: 561  AQDVAKKPK-LNKLN-SSEWKKTKSRVKHAVNEVAQELVLLYAKRQQTQGYRFGKDTVWQ 618

Query: 257  AEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAIRCVVSAK 316
             EF   FP++ T DQ  A ID  K   E E  MDRLICGDVG+GKTEVA+RA     +  
Sbjct: 619  TEFEDLFPFDETTDQLDA-IDATKKDMESEKIMDRLICGDVGYGKTEVAIRAAFKAANDG 677

Query: 317  KQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKSGELDIIV 376
            KQ   L PT +LA+QH++   ER   YP ++V +LSRF+T A++++ LE +K G++DII+
Sbjct: 678  KQVAFLVPTTILAQQHYNTFKERLGDYP-VRVEMLSRFRTPAQQKKALEGLKKGQVDIII 736

Query: 377  GTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPRTLYLALT 436
            GTH LL   VV+ +LGLL+VDEEQRFGV  KEKI   K +VDVLTLSATPIPRTL+++L 
Sbjct: 737  GTHRLLSKDVVFKDLGLLIVDEEQRFGVAHKEKIKQIKDNVDVLTLSATPIPRTLHMSLA 796

Query: 437  GFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEVMEF 496
            G RD S++  PP +R+PI+T +   + E +  AI  EL R GQ+FYV  R+KG++ +   
Sbjct: 797  GIRDMSVLEEPPVDRLPIQTFVMEHNSEVIREAINRELARNGQIFYVYNRVKGIDGMAME 856

Query: 497  LEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNANTIIVQDV 556
            +++  PD  +A  HG+   +QLE  M  F  GEI +L++T I+E+GLDI N NTII+ + 
Sbjct: 857  IQKLVPDANVAYAHGQMSERQLEKIMMAFINGEIDVLVATTIIETGLDISNVNTIIIDNA 916

Query: 557  QQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQGFQLAER 616
             Q GL+QLYQLRGRVGR+++ +YA+L+Y    +L + A +RL+A++E  ELG G ++A R
Sbjct: 917  DQMGLSQLYQLRGRVGRSNRNSYAFLMYKRDKVLKEIAEKRLAAIKEFTELGSGIKVAMR 976

Query: 617  DMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQVDININPH 676
            D+ IRG G + GE Q+G +  VG DL+ +ML +++  ++    V+  + + ++DIN+N +
Sbjct: 977  DLEIRGAGNLLGEAQSGHMEAVGYDLYCKMLNDAVRHLKGETDVSEEFET-EIDINVNAY 1035

Query: 677  LPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLLKKLYLRRM 736
            +P+ YI      +++      +   + +S MQ  E L  ++G  P   E LL+   L+  
Sbjct: 1036 IPNTYIKSEYQKLDMYKRIAAIENIEEYSEMQ--EELIDRFGDMPVAAENLLRVALLKAD 1093

Query: 737  AADIGINRI 745
            A    INRI
Sbjct: 1094 AHKAYINRI 1102


>M0TRK4_MUSAM (tr|M0TRK4) Uncharacterized protein OS=Musa acuminata subsp.
           malaccensis PE=4 SV=1
          Length = 375

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 228/316 (72%), Positives = 262/316 (82%), Gaps = 5/316 (1%)

Query: 43  RLTLPSPTKAVYTQGLYVSAPPPSKTDLDNDPISLLNERIRRDHGKREVSR--TVMDKKE 100
           RL       A YT+G    AP   + + + D I++LNERIRR+H +RE +   + MD  E
Sbjct: 43  RLIFSLRNTAFYTEG--AVAPRLERPEAEPDDIAILNERIRREHKRREGANNGSSMDSVE 100

Query: 101 AEKYIQLVKEQQQRGLQKLKGERVGKDGNFSYKVDPYTLRNGDYVVHKKVGIGMFIGIKM 160
           A+KYI+LVKEQQQRGLQKLKG++ G  G F Y+VDPYTLR GDYVVHKKVGIG F+ IK 
Sbjct: 101 ADKYIKLVKEQQQRGLQKLKGDKHGNVGGFGYQVDPYTLRPGDYVVHKKVGIGKFVAIKF 160

Query: 161 DVPKNSAE-PTEYVFIEYADGMAKLPVKQSSKMLYRYCLPNENKKPKALSKLNDTSVWEK 219
           D PK+S+  P EYVFIEYADGMAKLPVKQ+ +MLYRY LPNE KKP+ALSKL+D + W++
Sbjct: 161 DAPKDSSSGPIEYVFIEYADGMAKLPVKQACRMLYRYNLPNETKKPRALSKLSDPTTWQR 220

Query: 220 RKTKGKVAIQKMVVDLMELYLHRLKQRRPPYPKSPAMAEFTAQFPYEPTPDQKQAFIDVE 279
           R+ KGK+A+QKM+VDLMELYLHRLKQ+RPPYPKSP+MAEF A FPY+PTPDQKQAFIDVE
Sbjct: 221 RRIKGKIAVQKMIVDLMELYLHRLKQKRPPYPKSPSMAEFAAHFPYKPTPDQKQAFIDVE 280

Query: 280 KDLTERETPMDRLICGDVGFGKTEVALRAIRCVVSAKKQAMVLAPTIVLAKQHFDVISER 339
           +DLTERETPMDRLICGDVGFGKTEVALRAI CVVSA KQAMVL PTIVLAKQHF VISER
Sbjct: 281 RDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLTPTIVLAKQHFVVISER 340

Query: 340 FAVYPDIKVGLLSRFQ 355
           F+ YP IKVGLLSRFQ
Sbjct: 341 FSQYPHIKVGLLSRFQ 356


>G4HP16_9BACL (tr|G4HP16) Transcription-repair coupling factor (Precursor)
            OS=Paenibacillus lactis 154 GN=PaelaDRAFT_5727 PE=4 SV=1
          Length = 1175

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 262/657 (39%), Positives = 400/657 (60%), Gaps = 19/657 (2%)

Query: 107  LVKEQQQRGLQKLKGERVGKDGNFSYKVDPYT-LRNGDYVVHKKVGIGMFIGIKMDVPKN 165
            ++ E +    ++ K  +  K  + + ++  YT L+ GDYVVH+  GIG ++GI     + 
Sbjct: 456  VITESEMFSSKQRKTRKTTKSMDNAERIKSYTELKVGDYVVHQNHGIGKYMGIG--TLEI 513

Query: 166  SAEPTEYVFIEYADGMAKLPVKQSSKMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGK 225
            +    +Y+ I YA G  KL V      L +  + +E+K+PK + KL     W + K K +
Sbjct: 514  NGIHKDYMHILYAGG-DKLSVPIEQIDLIQKYVGSEDKEPK-IYKLGGNE-WTRVKNKVR 570

Query: 226  VAIQKMVVDLMELYLHRLKQRRPPY---PKSPAMAEFTAQFPYEPTPDQKQAFIDVEKDL 282
             ++Q +  DL++LY  R  Q  P Y     +P   EF   FPY+ TPDQ +A  +++KD+
Sbjct: 571  SSVQDIADDLIKLYAER--QSAPGYGFDKDTPEQQEFEDMFPYDETPDQLRAIAEIKKDM 628

Query: 283  TERETPMDRLICGDVGFGKTEVALRAIRCVVSAKKQAMVLAPTIVLAKQHFDVISERFAV 342
             E+  PMDRL+CGDVG+GKTEVA+RA        KQ  VL PT +LA+QH++   ERFA 
Sbjct: 629  -EQNRPMDRLLCGDVGYGKTEVAVRAAFKAAIEGKQVAVLVPTTILAQQHYETFRERFAN 687

Query: 343  YPDIKVGLLSRFQTKAEKEEHLESIKSGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRF 402
            YP I + +LSRF+++ E+ E ++ +K G +DI++GTH LL   +V+ +LGLL+VDEEQRF
Sbjct: 688  YP-INIQVLSRFRSRKEQNETIKKVKQGAVDILIGTHRLLSQDIVFKDLGLLIVDEEQRF 746

Query: 403  GVKQKEKIATFKTSVDVLTLSATPIPRTLYLALTGFRDASLITTPPPERVPIKTHLSSFS 462
            GV  KEK+   KT+VDVLTL+ATPIPRTL++++ G RD S+I TPP  R P++T++   S
Sbjct: 747  GVTHKEKLKKLKTNVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEHS 806

Query: 463  KEKVISAIKYELDRGGQVFYVLPRIKGLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTM 522
            +  V  AI+ EL RGGQV+Y+  R++G+ E+   +    P+  + +GHG+    +LE T+
Sbjct: 807  QTLVREAIERELARGGQVYYLYNRVQGIHEMAAQISMLVPEARVGVGHGQMSETELEKTI 866

Query: 523  EKFALGEIKILISTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYL 582
              F  GE  +L+ST+I+E+G+DI N NT+IV D  + GL+QLYQLRGRVGR+++ AYAY 
Sbjct: 867  LDFLDGEYDVLVSTSIIETGVDIPNVNTLIVHDADKMGLSQLYQLRGRVGRSNRIAYAYF 926

Query: 583  LYPDKNLLSDQALERLSALEECRELGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDL 642
             Y    +L++ A +RL +++E  ELG GF++A RD+ IRG G + G +Q G + +VG DL
Sbjct: 927  TYQRDKVLTEVAEKRLQSIKEFTELGSGFKIAMRDLSIRGAGNLLGAEQHGFIASVGFDL 986

Query: 643  FFEMLFESLS--KVEEHRVVAVPYH--SVQVDININPHLPSEYINHLENPMEIINEAERV 698
            + +ML E +   KV      A P    +  +D+ I+ +LPS+YI      +EI  +   V
Sbjct: 987  YSQMLAEEIQKRKVSMLGETAAPTKDWNTSIDLGIDAYLPSDYIYDSIQKIEIYKKVASV 1046

Query: 699  AEKDTWSLMQFTENLRRQYGKEPRPMEVLLKKLYLRRMAADIGINRIYSSGKTVFMK 755
               D  +  +  + L  ++G+ P+ +  LL    L+      GI+ I   G  V ++
Sbjct: 1047 TTIDESA--ELEDELLDRFGELPQAVNNLLAVSRLKVYGRTYGIDSITQRGDDVLLQ 1101


>F3SNI1_STAWA (tr|F3SNI1) Transcription-repair coupling factor OS=Staphylococcus
            warneri VCU121 GN=mfd PE=4 SV=1
          Length = 1169

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 251/617 (40%), Positives = 394/617 (63%), Gaps = 14/617 (2%)

Query: 139  LRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKL--PVKQSSKMLYRY 196
            L  GDYVVH   G+G ++G+  +  +   +  +Y+ ++Y  G  +L  PV Q  ++  + 
Sbjct: 496  LNVGDYVVHVHHGVGRYLGV--ETLEVGEQHRDYIKLQYK-GTDQLFVPVDQMDQV--QK 550

Query: 197  CLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY-PKSPA 255
             + +E+K P+ L+KL  T  W+K K K + +++ +  +L++LY  R       + P +  
Sbjct: 551  YVASEDKSPR-LNKLGGTE-WKKTKAKVQQSVEDIADELIDLYKQREMSVGYQFGPDTEE 608

Query: 256  MAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAIRCVVSA 315
             + F   FPYE TPDQ ++  +++ D+ ERE PMDRL+CGDVG+GKTEVA+RA    V  
Sbjct: 609  QSTFELDFPYELTPDQSKSIDEIKGDM-ERERPMDRLLCGDVGYGKTEVAVRAAFKAVME 667

Query: 316  KKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKSGELDII 375
             KQ   L PT +LA+QH++ + ER   +P +++ L+SRF++  E +E  E +KSG +DI+
Sbjct: 668  GKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLISRFRSTKEVKETKEGLKSGYVDIV 726

Query: 376  VGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPRTLYLAL 435
            VGTH LLG  + Y +LGLL+VDEEQRFGV+ KE+I T K +VDVLTL+ATPIPRTL++++
Sbjct: 727  VGTHKLLGKDIHYKDLGLLIVDEEQRFGVRHKERIKTLKNNVDVLTLTATPIPRTLHMSM 786

Query: 436  TGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEVME 495
             G RD S+I TPP  R P++T++   +   +  A++ EL R GQVFY+  +++ + E  E
Sbjct: 787  LGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLYNKVQSIYEKRE 846

Query: 496  FLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNANTIIVQD 555
             L+   PD  IA+ HG+   + LE+TM  F   E  IL++T I+E+G+D+ NANT+I+++
Sbjct: 847  QLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLIIEE 906

Query: 556  VQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQGFQLAE 615
              +FGL+QLYQLRGRVGR+ +  YAY L+P   +L++ A ERL A++E  ELG GF++A 
Sbjct: 907  ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEFTELGSGFKIAM 966

Query: 616  RDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQVDININP 675
            RD+ IRG G + G+QQ G + +VG DL+ +ML E++++    +  A     V+V++N++ 
Sbjct: 967  RDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEEAPDVPDVEVELNLDA 1026

Query: 676  HLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLLKKLYLRR 735
            +LP+EYI + +  +EI  +  +V  +D   LM   + L  ++   P  +E LL  + ++ 
Sbjct: 1027 YLPAEYIQNEQAKIEIYKKLRKVETED--QLMDIKDELIDRFNDYPTEVERLLDIVEIKT 1084

Query: 736  MAADIGINRIYSSGKTV 752
             A   GI +I   GK +
Sbjct: 1085 HALHAGITKIKDMGKQI 1101


>J7IPS3_DESMD (tr|J7IPS3) Transcription-repair coupling factor Mfd
            OS=Desulfosporosinus meridiei (strain ATCC BAA-275 / DSM
            13257 / NCIMB 13706 / S10) GN=Desmer_0060 PE=4 SV=1
          Length = 1177

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 256/624 (41%), Positives = 388/624 (62%), Gaps = 15/624 (2%)

Query: 139  LRNGDYVVHKKVGIGMFIGI-KMDVPKNSAEPTEYVFIEYADGMAKLPVKQSSKMLYRYC 197
            L+ GD+VVH   GIG F GI +++V        +Y  I YA G  +L V      L +  
Sbjct: 502  LKPGDFVVHVHHGIGQFTGIERLEV---GGIAKDYFGIRYA-GEDRLYVPLDQLHLLQKY 557

Query: 198  LPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPYPKSPAMA 257
            L +  +    L KL   S W K K K + A+++M +DL++LY  R   +   + +     
Sbjct: 558  LGSAGETLPKLYKLGG-SEWYKVKKKTRSAVKEMAIDLVKLYAQREAIKGYAFSQDNVWQ 616

Query: 258  -EFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAIRCVVSAK 316
             EF  +FPY  TPDQ Q+  DV+ D+  R  PMDRL+CGDVG+GKTEVALRA    V   
Sbjct: 617  NEFEDKFPYVETPDQLQSIADVKSDMM-RSRPMDRLLCGDVGYGKTEVALRAAFKAVMDS 675

Query: 317  KQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKSGELDIIV 376
            KQ  VL PT +LA+QHF+   ERF  YP I + +LSRF+++ E++E ++ +K G++DIIV
Sbjct: 676  KQVAVLVPTTILAQQHFNTFKERFIGYP-ISIEMLSRFRSQKEQKEIIKGLKDGKIDIIV 734

Query: 377  GTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPRTLYLALT 436
            GTH +L   V +++LGLLV+DEEQRFGV  KEK+ T K +VDVLTLSATPIPRTL+++L 
Sbjct: 735  GTHRILSEAVKFNDLGLLVIDEEQRFGVAHKEKLKTLKGNVDVLTLSATPIPRTLHMSLV 794

Query: 437  GFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEVMEF 496
            G RD S+I TPP  R P++T+++ F  + V  AI+ E+ RGGQVFYV  R++ +++V  F
Sbjct: 795  GVRDMSVIETPPEGRYPVQTYVTEFRADVVREAIRREIQRGGQVFYVHNRVEDMDQVTRF 854

Query: 497  LEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNANTIIVQDV 556
            L E  P+    + HG+   ++LE  M  F   E+ +L+ST I+E+GLD+ NANT+I+ + 
Sbjct: 855  LSELVPEARFGVAHGQMRERELEKVMLDFLEHEMDVLVSTTIIETGLDMPNANTLIIDEA 914

Query: 557  QQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQGFQLAER 616
              FGL+QLYQLRGRVGR++++AY YLLY  + +L++ A +RL+A+ E  E G GF++A R
Sbjct: 915  DHFGLSQLYQLRGRVGRSNRKAYTYLLYKPQKVLTEIAEKRLAAIREFTEYGAGFKIAMR 974

Query: 617  DMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQVDININPH 676
            D+ IRG G + G QQ G +  VG +++ +ML E++ ++   +V      S++  + ++ +
Sbjct: 975  DLEIRGAGNLIGAQQHGHLAAVGFEMYSQMLKEAVQELRGEKVEEAIEPSIE--LQVDAY 1032

Query: 677  LPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLLKKLYLRRM 736
            LP  Y+   +    +      V  +D   L +  + L  ++G  PR +E L++ + ++ +
Sbjct: 1033 LPDTYVADNQTKASLYQRLAMV--RDEGQLSEMVDELVDRFGTPPREVEHLIEIIRIKLL 1090

Query: 737  AADIGINRIYSSGKTVFMK--ANI 758
            A  + I +I  + + V ++  ANI
Sbjct: 1091 AGSLKIEQIQQAKQNVSLRFLANI 1114


>L7X1V7_STAWS (tr|L7X1V7) Transcription-repair coupling factor OS=Staphylococcus
            warneri (strain SG1) GN=A284_10835 PE=4 SV=1
          Length = 1169

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 251/617 (40%), Positives = 394/617 (63%), Gaps = 14/617 (2%)

Query: 139  LRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKL--PVKQSSKMLYRY 196
            L  GDYVVH   G+G ++G+  +  +   +  +Y+ ++Y  G  +L  PV Q  ++  + 
Sbjct: 496  LNVGDYVVHVHHGVGRYLGV--ETLEVGEQHRDYIKLQYK-GTDQLFVPVDQMDQV--QK 550

Query: 197  CLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY-PKSPA 255
             + +E+K P+ L+KL  T  W+K K K + +++ +  +L++LY  R       + P +  
Sbjct: 551  YVASEDKSPR-LNKLGGTE-WKKTKAKVQQSVEDIADELIDLYKQREMSVGYQFGPDTEE 608

Query: 256  MAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAIRCVVSA 315
             + F   FPYE TPDQ ++  +++ D+ ERE PMDRL+CGDVG+GKTEVA+RA    V  
Sbjct: 609  QSTFELDFPYELTPDQSKSIDEIKGDM-ERERPMDRLLCGDVGYGKTEVAVRAAFKAVME 667

Query: 316  KKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKSGELDII 375
             KQ   L PT +LA+QH++ + ER   +P +++ L+SRF++  E +E  E +KSG +DI+
Sbjct: 668  GKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLISRFRSTKEVKETKEGLKSGYVDIV 726

Query: 376  VGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPRTLYLAL 435
            VGTH LLG  + Y +LGLL+VDEEQRFGV+ KE+I T K +VDVLTL+ATPIPRTL++++
Sbjct: 727  VGTHKLLGKDIHYKDLGLLIVDEEQRFGVRHKERIKTLKNNVDVLTLTATPIPRTLHMSM 786

Query: 436  TGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEVME 495
             G RD S+I TPP  R P++T++   +   +  A++ EL R GQVFY+  +++ + E  E
Sbjct: 787  LGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLYNKVQSIYEKRE 846

Query: 496  FLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNANTIIVQD 555
             L+   PD  IA+ HG+   + LE+TM  F   E  IL++T I+E+G+D+ NANT+I+++
Sbjct: 847  QLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLIIEE 906

Query: 556  VQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQGFQLAE 615
              +FGL+QLYQLRGRVGR+ +  YAY L+P   +L++ A ERL A++E  ELG GF++A 
Sbjct: 907  ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEFTELGSGFKIAM 966

Query: 616  RDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQVDININP 675
            RD+ IRG G + G+QQ G + +VG DL+ +ML E++++    +  A     V+V++N++ 
Sbjct: 967  RDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEEAPDVPDVEVELNLDA 1026

Query: 676  HLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLLKKLYLRR 735
            +LP+EYI + +  +EI  +  +V  +D   LM   + L  ++   P  +E LL  + ++ 
Sbjct: 1027 YLPAEYIQNEQAKIEIYKKLRKVETED--QLMDIKDELIDRFNDYPTEVERLLDIVEIKT 1084

Query: 736  MAADIGINRIYSSGKTV 752
             A   GI +I   GK +
Sbjct: 1085 HALHAGITKIKDMGKQI 1101


>R7LW11_9FUSO (tr|R7LW11) Transcription-repair coupling factor OS=Fusobacterium sp.
            CAG:815 GN=BN791_00431 PE=4 SV=1
          Length = 1129

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 260/631 (41%), Positives = 396/631 (62%), Gaps = 24/631 (3%)

Query: 132  YKVDPYTLRN------GDYVVHKKVGIGMFIGI-KMDVPKNSAEPTEYVFIEYAD-GMAK 183
            YK  P  + N      G+YVVH   G+G++ G+ K ++     +  +Y+ IEYA+     
Sbjct: 441  YKEKPEYIENINDIKVGEYVVHTIHGLGIYKGLSKQEI---DGQLKDYLTIEYANKDRLH 497

Query: 184  LPVKQSSKMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRL 243
            +P +Q + +L RY   + + KPK LS++     WE  K K K A++ +  DL+ LY  R 
Sbjct: 498  IPAEQIN-LLCRY-RGSGSVKPK-LSQMGGRD-WENTKAKVKKAVEVVAYDLLRLYARRK 553

Query: 244  KQRRPPY-PKSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKT 302
             Q    + P +    E    F +  TPDQ +A   V+KD+ E   PMDRLICGDVGFGKT
Sbjct: 554  MQEGIQFLPDTTWQIEMEEAFEFVETPDQLKAIEQVKKDM-ESSQPMDRLICGDVGFGKT 612

Query: 303  EVALRAIRCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEE 362
            EVA+RAI   V++ KQ  V+ PT +LA QH+  ISERF  +  + V LLSRF+T  E++E
Sbjct: 613  EVAMRAIFKAVTSGKQVAVVVPTTILALQHYQTISERFKPFG-VDVELLSRFRTHKEQKE 671

Query: 363  HLESIKSGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTL 422
             ++++ +G+ D++VGTH LL   + + +LGLLV+DEE RFGV+ KEK+   + ++D+L++
Sbjct: 672  TIKNLATGKCDVVVGTHRLLQEGIEFKDLGLLVIDEEHRFGVRHKEKLKQLRENIDILSM 731

Query: 423  SATPIPRTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFY 482
            SATPIPRTLY++L+G +D S+I TPP  R+PIKT++  +++  V +AI +ELDR GQVFY
Sbjct: 732  SATPIPRTLYMSLSGIKDMSIINTPPKNRLPIKTYVGEWNETMVKNAINHELDREGQVFY 791

Query: 483  VLPRIKGLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESG 542
            +  R++ ++E    L++  P+  IAIGHG+   K+LE+ +  FA  E  IL++T I+E+G
Sbjct: 792  LYNRVETIQEFKNQLQKIVPNARIAIGHGQMDEKELEEVIVDFANQEYDILLATTIIENG 851

Query: 543  LDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALE 602
            +DI NANT+I+ D  +FGLAQLYQLRGRVGR+ ++AY Y  Y     ++ +A+ RL A++
Sbjct: 852  IDIPNANTMIIHDADRFGLAQLYQLRGRVGRSQRQAYCYCFYKKSKEITKEAMHRLKAIK 911

Query: 603  ECRELGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAV 662
            E   LG G+Q+A RD+ IRG G I G +Q G + NVG D + E+L E++ +++  +V   
Sbjct: 912  EFTTLGSGYQIALRDVEIRGVGNILGTKQHGHMINVGFDTYCELLEETVQELQGEKVEKT 971

Query: 663  PYHSVQVDININPHLPSEYINHLENPMEIINEAERVAE-KDTWSLMQFTENLRRQYGKEP 721
              +   VDIN+  ++P E++   +  M    E +R+A+ K +  L    E  + ++ K P
Sbjct: 972  --NPTIVDINVTAYIPDEWVGSTDQKM---IEYKRLADVKSSTELDYIVEEWQDRFAKPP 1026

Query: 722  RPMEVLLKKLYLRRMAADIGINRIYSSGKTV 752
              +E L+K + LR  A +I I  I  +G T+
Sbjct: 1027 ECVENLIKLIRLRLSATEIKITAIREAGNTI 1057


>C6CRK3_PAESJ (tr|C6CRK3) Transcription-repair coupling factor OS=Paenibacillus sp.
            (strain JDR-2) GN=Pjdr2_0039 PE=4 SV=1
          Length = 1175

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 260/656 (39%), Positives = 408/656 (62%), Gaps = 31/656 (4%)

Query: 104  YIQLVKEQQQRGLQKLKGERVGKDGNFSYKVDPYT-LRNGDYVVHKKVGIGMFIGIKMDV 162
            ++ ++ E +    ++ K  R+ K  + + ++  YT L+ GDYVVH+  GIG ++GI    
Sbjct: 452  HLVIITEGEMFSQKQRKARRMDKKIDNAERIKSYTELKVGDYVVHQNHGIGKYVGIG--T 509

Query: 163  PKNSAEPTEYVFIEYADG-MAKLPVKQSSKMLYRYCLPNENKKPKALSKLNDTSVWEKRK 221
             +      +Y+ I YA G    +PV+Q   M+ +Y + +E K+PK ++KL   S W + K
Sbjct: 510  LEIGGIHKDYLHILYAGGDKLSVPVEQVD-MIQKY-VGSEEKEPK-INKLG-GSEWIRAK 565

Query: 222  TKGKVAIQKMVVDLMELYLHRLKQRRPPYPKSPAMA---EFTAQFPYEPTPDQKQAFIDV 278
             K + ++Q +  DL++LY  R  Q  P +      A   EF A FPY+ T DQ +A  ++
Sbjct: 566  NKVRASVQDIADDLIKLYAER--QSAPGFAFGQDTAYQNEFEAIFPYDETRDQLRAIEEI 623

Query: 279  EKDLTERETPMDRLICGDVGFGKTEVALRAIRCVVSAKKQAMVLAPTIVLAKQHFDVISE 338
            +KD+ ++  PMDRL+CGDVG+GKTEVA+RA        KQ  +L PT +LA+QH++   E
Sbjct: 624  KKDM-QKPQPMDRLLCGDVGYGKTEVAVRAAFKAAIEGKQVAILVPTTILAQQHYETFRE 682

Query: 339  RFAVYPDIKVGLLSRFQTKAEKEEHLESIKSGELDIIVGTHSLLGNRVVYSNLGLLVVDE 398
            RF+ YP   + +LSRF+++ E+ + ++ +K+G +D+++GTH LL   V++ +LGLL+VDE
Sbjct: 683  RFSGYP-FNIQVLSRFRSRKEQNDTMKGLKAGTVDVVIGTHRLLSQDVIFKDLGLLIVDE 741

Query: 399  EQRFGVKQKEKIATFKTSVDVLTLSATPIPRTLYLALTGFRDASLITTPPPERVPIKTHL 458
            EQRFGV  KEK+   KT+VDVLTL+ATPIPRTL++++ G RD S+I TPP  R P++T++
Sbjct: 742  EQRFGVSHKEKLKKLKTNVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYV 801

Query: 459  SSFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEVMEFLEESFPDVEIAIGHGKQYSKQL 518
              +S   V  AI+ EL RGGQV+Y+  R++G+ ++ E +    PD ++A+GHG+   ++L
Sbjct: 802  VEYSTSLVREAIERELARGGQVYYLYNRVQGIYQMAEQINALVPDAKVAVGHGQMSEQEL 861

Query: 519  EDTMEKFALGEIKILISTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEA 578
            E T+  F  GE  +L+ST+I+E+G+DI N NT+IV D  + GL+QLYQLRGRVGR+++ A
Sbjct: 862  EKTILDFLDGESDVLVSTSIIETGVDIPNVNTLIVHDADKMGLSQLYQLRGRVGRSNRIA 921

Query: 579  YAYLLYPDKNLLSDQALERLSALEECRELGQGFQLAERDMGIRGFGTIFGEQQTGDVGNV 638
            YAY  Y    +L++ A +RL +++E  ELG GF++A RD+ IRG G + G +Q G + +V
Sbjct: 922  YAYFTYQRDKVLTEVAEKRLQSIKEFTELGSGFKIAMRDLSIRGAGNLLGAEQHGFIASV 981

Query: 639  GIDLFFEMLFESLSK---------VEEHRVVAVPYHSVQVDININPHLPSEYINHLENPM 689
            G DL+ +ML + ++K         V+E R V     S  +D++I+ +LPS+YI      +
Sbjct: 982  GFDLYSQMLADEIAKRKAEMEGVEVKEERRV-----STLIDVSIDAYLPSDYIYDSIQKI 1036

Query: 690  EIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLLKKLYLRRMAADIGINRI 745
            EI  +   V   D        E L  ++G  P+ ++ LL    L+      GI +I
Sbjct: 1037 EIYKKVATVTSIDEAE--DLAEELIDRFGNLPQAVDNLLSVARLKVYGTQYGIEQI 1090


>D7AT15_THEM3 (tr|D7AT15) Transcription-repair coupling factor
            OS=Thermoanaerobacter mathranii (strain DSM 11426 / CIP
            108742 / A3) GN=Tmath_2139 PE=4 SV=1
          Length = 1163

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 259/628 (41%), Positives = 389/628 (61%), Gaps = 19/628 (3%)

Query: 133  KVDPYT-LRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADG-MAKLPVKQSS 190
            K+  +T L  G YVVH   GIG + GI+    K      +Y+ I YA G    +PV+Q  
Sbjct: 494  KIKSFTELEVGSYVVHVNYGIGKYEGIEK--IKVDGIIRDYLKIIYAGGDTLFVPVEQLD 551

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
             ++ +Y  P +N  P  L+KL   S W K K K K A++ +  DL++LY  R   +   +
Sbjct: 552  -LVQKYVGPTDN--PPKLNKLG-GSEWLKAKRKAKKAVEDLAKDLLQLYAKRQIAKGHAF 607

Query: 251  -PKSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
             P +P   EF  QFPYE T DQ +   ++++D+ E++ PMDRL+CGDVG+GKTEVALRA 
Sbjct: 608  SPDTPWQREFEEQFPYEETEDQLRCIKEIKEDM-EKDKPMDRLLCGDVGYGKTEVALRAA 666

Query: 310  RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKS 369
               V+  KQ   L PT +LA QH+    ERF  +P +K+ +LSRF+T  E+ + ++ +  
Sbjct: 667  FKAVADGKQVAFLCPTTILAYQHYTNFMERFKEFP-VKIEMLSRFRTPKEQAQIIKGLAE 725

Query: 370  GELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPR 429
            G +DIIVGTH LL N V + +LGLL++DEEQRFGV  KEKI   K ++DVLTLSATPIPR
Sbjct: 726  GTIDIIVGTHRLLQNDVKFKDLGLLIIDEEQRFGVVHKEKIKKLKENIDVLTLSATPIPR 785

Query: 430  TLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKG 489
            TL+++L G RD S++  PP +R P++T++  F++E +  AI  E+ RGGQV++V  R+ G
Sbjct: 786  TLHMSLIGIRDMSVLENPPEDRFPVETYVVEFNEELIKDAILREIGRGGQVYFVYNRVNG 845

Query: 490  LEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNAN 549
            +E++   +++  P   +A+ HG+    QLE  M  F  GE  +L+ST I+E+GLDI N N
Sbjct: 846  IEKMASLVKDLVPGCRVAVAHGQMEESQLEKVMIDFLNGEYDVLVSTTIIETGLDIPNVN 905

Query: 550  TIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQ 609
            TIIV D  + GL+QLYQLRGRVGR+++ AYAY  Y    +LS+ A +RL A++E  E G 
Sbjct: 906  TIIVYDADKLGLSQLYQLRGRVGRSNRLAYAYFTYRKDKVLSEVAEKRLEAIKEFTEFGS 965

Query: 610  GFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSV-- 667
            GF++A RD+ IRG G + G +Q G +G +G DL+ ++L E++  ++       P   +  
Sbjct: 966  GFKIAMRDLEIRGAGNLLGAEQHGHIGAIGYDLYLKLLEEAIRNLKGE----APKEEITT 1021

Query: 668  QVDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVL 727
             +DI +N ++ S YI    + +E+  +   +  ++   +++ +E L  ++G  P+P+E L
Sbjct: 1022 TIDIKVNAYIDSSYIEDENSRLEMYKKIASIESRE--DMVEISEELVDRFGDYPKPVEAL 1079

Query: 728  LKKLYLRRMAADIGINRIYSSGKTVFMK 755
            L+  YL+ +A+   I  I   G TV +K
Sbjct: 1080 LEIAYLKAIASKANITEITEKGNTVILK 1107


>I9MWC7_9FIRM (tr|I9MWC7) Transcription-repair coupling factor OS=Pelosinus
            fermentans A12 GN=FA12_1595 PE=4 SV=1
          Length = 1089

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 255/647 (39%), Positives = 403/647 (62%), Gaps = 17/647 (2%)

Query: 102  EKYIQLVKEQQQRGLQKLKGE-RVGKDGNFSYKVDPYTLRNGDYVVHKKVGIGMFIGIKM 160
            + ++ ++ E+   G QK K   RVGK    +Y  D   ++ GDYVVH   GIG ++G++ 
Sbjct: 392  QAHLLVIAEKDIMGRQKKKPRPRVGKGQQIAYFRD---IKIGDYVVHINHGIGKYVGVET 448

Query: 161  DVPKNSAEPTEYVFIEYADGMAKLPVKQSSKMLYRYCLPNENKKPKALSKLNDTSVWEKR 220
             +  N  +  +Y+ I YA G  KL V      L +  + +E   P+ L+K+  +  W K 
Sbjct: 449  LIVGNVHK--DYLHIRYA-GEDKLYVPTDQVHLLQKYIGSEGDAPR-LNKMGGSD-WLKA 503

Query: 221  KTKGKVAIQKMVVDLMELYLHRLKQRRPPY-PKSPAMAEFTAQFPYEPTPDQKQAFIDVE 279
            K K + A+  M  +L+E+Y  R       + P +P   EF   FPYE TPDQ  A I+++
Sbjct: 504  KGKAEKAVADMAKELLEIYAQRKVASGFAFDPDTPWQKEFEDAFPYEETPDQLSAIIEIK 563

Query: 280  KDLTERETPMDRLICGDVGFGKTEVALRAIRCVVSAKKQAMVLAPTIVLAKQHFDVISER 339
             D+ E+  PMDRL+CGDVGFGKTEVA+RA    V   KQ  +L PT VLA+QH+  IS R
Sbjct: 564  SDM-EKSQPMDRLLCGDVGFGKTEVAIRAAYKAVMGGKQVAILVPTTVLAQQHYQTISAR 622

Query: 340  FAVYPDIKVGLLSRFQTKAEKEEHLESIKSGELDIIVGTHSLLGNRVVYSNLGLLVVDEE 399
            FA +  + V ++SRF+   E+   +E++ SG++D+++GTH +L + V++ N+GLL+VDEE
Sbjct: 623  FAGFGPV-VDVISRFRNAREQRGTIEALVSGQVDVLIGTHRILQSDVIFKNIGLLIVDEE 681

Query: 400  QRFGVKQKEKIATFKTSVDVLTLSATPIPRTLYLALTGFRDASLITTPPPERVPIKTHLS 459
            QRFGVKQKEK+  +   +DVLTLSATPIPRTL+++L G RD S+I TPP ER P+++++ 
Sbjct: 682  QRFGVKQKEKLKKWSAGIDVLTLSATPIPRTLHMSLVGARDMSIIETPPEERFPVQSYVV 741

Query: 460  SFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEVMEFLEESFPDVEIAIGHGKQYSKQLE 519
             +++E +  AIK EL RGGQV++V  R++ ++++   L E  PD +I + HG+   + LE
Sbjct: 742  EYNEEVMRDAIKRELKRGGQVYFVYNRVQTIDKMYRRLAEMLPDAKIRVAHGQMPEEMLE 801

Query: 520  DTMEKFALGEIKILISTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAY 579
              M  F  G   +L+ T+I+E+GLD+ NANTIIV D   FGL+QLYQ+RGRVGR+ + A+
Sbjct: 802  QAMLDFYEGTDDVLLCTSIIENGLDVPNANTIIVYDADHFGLSQLYQMRGRVGRSHRMAF 861

Query: 580  AYLLYPDKNLLSDQALERLSALEECRELGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVG 639
            AY  Y    +L++ A +RL A++E  ELG GF++A RD+ IRG G + G QQ G + +VG
Sbjct: 862  AYFTYRQDKVLTEVAEKRLQAIKEFAELGAGFKIAMRDLEIRGAGNLLGSQQHGHIVSVG 921

Query: 640  IDLFFEMLFESLSKVEEHRVVAVPYHSVQVDININPHLPSEYINHLENPMEIINEAERVA 699
             +++  +L E++ +++  R +  P   V ++ N++ ++  +YI+   + +EI    +R+A
Sbjct: 922  FEMYCRLLDEAVQQLKTGRTLEAPVEPV-LEFNVDAYISGDYISDAMHKIEIY---QRIA 977

Query: 700  E-KDTWSLMQFTENLRRQYGKEPRPMEVLLKKLYLRRMAADIGINRI 745
              ++   +    + L  ++G+ P  +  LL+ + ++  +  IGI  +
Sbjct: 978  ACRNEKHISDLVDELIDRFGEPPGCVLNLLEVVKIKNFSRAIGIRSV 1024


>I9MQ15_9FIRM (tr|I9MQ15) Transcription-repair coupling factor OS=Pelosinus
            fermentans B3 GN=FB3_2340 PE=4 SV=1
          Length = 1089

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 255/647 (39%), Positives = 403/647 (62%), Gaps = 17/647 (2%)

Query: 102  EKYIQLVKEQQQRGLQKLKGE-RVGKDGNFSYKVDPYTLRNGDYVVHKKVGIGMFIGIKM 160
            + ++ ++ E+   G QK K   RVGK    +Y  D   ++ GDYVVH   GIG ++G++ 
Sbjct: 392  QAHLLVIAEKDIMGRQKKKPRPRVGKGQQIAYFRD---IKIGDYVVHINHGIGKYVGVET 448

Query: 161  DVPKNSAEPTEYVFIEYADGMAKLPVKQSSKMLYRYCLPNENKKPKALSKLNDTSVWEKR 220
             +  N  +  +Y+ I YA G  KL V      L +  + +E   P+ L+K+  +  W K 
Sbjct: 449  LIVGNVHK--DYLHIRYA-GEDKLYVPTDQVHLLQKYIGSEGDAPR-LNKMGGSD-WLKA 503

Query: 221  KTKGKVAIQKMVVDLMELYLHRLKQRRPPY-PKSPAMAEFTAQFPYEPTPDQKQAFIDVE 279
            K K + A+  M  +L+E+Y  R       + P +P   EF   FPYE TPDQ  A I+++
Sbjct: 504  KGKAEKAVADMAKELLEIYAQRKVASGFAFDPDTPWQKEFEDAFPYEETPDQLSAIIEIK 563

Query: 280  KDLTERETPMDRLICGDVGFGKTEVALRAIRCVVSAKKQAMVLAPTIVLAKQHFDVISER 339
             D+ E+  PMDRL+CGDVGFGKTEVA+RA    V   KQ  +L PT VLA+QH+  IS R
Sbjct: 564  SDM-EKSQPMDRLLCGDVGFGKTEVAIRAAYKAVMGGKQVAILVPTTVLAQQHYQTISAR 622

Query: 340  FAVYPDIKVGLLSRFQTKAEKEEHLESIKSGELDIIVGTHSLLGNRVVYSNLGLLVVDEE 399
            FA +  + V ++SRF+   E+   +E++ SG++D+++GTH +L + V++ N+GLL+VDEE
Sbjct: 623  FAGFGPV-VDVISRFRNAREQRGTIEALVSGQVDVLIGTHRILQSDVIFKNIGLLIVDEE 681

Query: 400  QRFGVKQKEKIATFKTSVDVLTLSATPIPRTLYLALTGFRDASLITTPPPERVPIKTHLS 459
            QRFGVKQKEK+  +   +DVLTLSATPIPRTL+++L G RD S+I TPP ER P+++++ 
Sbjct: 682  QRFGVKQKEKLKKWSAGIDVLTLSATPIPRTLHMSLVGARDMSIIETPPEERFPVQSYVV 741

Query: 460  SFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEVMEFLEESFPDVEIAIGHGKQYSKQLE 519
             +++E +  AIK EL RGGQV++V  R++ ++++   L E  PD +I + HG+   + LE
Sbjct: 742  EYNEEVMRDAIKRELKRGGQVYFVYNRVQTIDKMYRRLAEMLPDAKIRVAHGQMPEEMLE 801

Query: 520  DTMEKFALGEIKILISTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAY 579
              M  F  G   +L+ T+I+E+GLD+ NANTIIV D   FGL+QLYQ+RGRVGR+ + A+
Sbjct: 802  QAMLDFYEGTDDVLLCTSIIENGLDVPNANTIIVYDADHFGLSQLYQMRGRVGRSHRMAF 861

Query: 580  AYLLYPDKNLLSDQALERLSALEECRELGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVG 639
            AY  Y    +L++ A +RL A++E  ELG GF++A RD+ IRG G + G QQ G + +VG
Sbjct: 862  AYFTYRQDKVLTEVAEKRLQAIKEFAELGAGFKIAMRDLEIRGAGNLLGSQQHGHIVSVG 921

Query: 640  IDLFFEMLFESLSKVEEHRVVAVPYHSVQVDININPHLPSEYINHLENPMEIINEAERVA 699
             +++  +L E++ +++  R +  P   V ++ N++ ++  +YI+   + +EI    +R+A
Sbjct: 922  FEMYCRLLDEAVQQLKTGRTLEAPVEPV-LEFNVDAYISGDYISDAMHKIEIY---QRIA 977

Query: 700  E-KDTWSLMQFTENLRRQYGKEPRPMEVLLKKLYLRRMAADIGINRI 745
              ++   +    + L  ++G+ P  +  LL+ + ++  +  IGI  +
Sbjct: 978  ACRNEKHISDLVDELIDRFGEPPGCVLNLLEVVKIKNFSRAIGIRSV 1024


>I9MGF5_9FIRM (tr|I9MGF5) Transcription-repair coupling factor OS=Pelosinus
            fermentans DSM 17108 GN=FR7_2636 PE=4 SV=1
          Length = 1089

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 255/647 (39%), Positives = 403/647 (62%), Gaps = 17/647 (2%)

Query: 102  EKYIQLVKEQQQRGLQKLKGE-RVGKDGNFSYKVDPYTLRNGDYVVHKKVGIGMFIGIKM 160
            + ++ ++ E+   G QK K   RVGK    +Y  D   ++ GDYVVH   GIG ++G++ 
Sbjct: 392  QAHLLVIAEKDIMGRQKKKPRPRVGKGQQIAYFRD---IKIGDYVVHINHGIGKYVGVET 448

Query: 161  DVPKNSAEPTEYVFIEYADGMAKLPVKQSSKMLYRYCLPNENKKPKALSKLNDTSVWEKR 220
             +  N  +  +Y+ I YA G  KL V      L +  + +E   P+ L+K+  +  W K 
Sbjct: 449  LIVGNVHK--DYLHIRYA-GEDKLYVPTDQVHLLQKYIGSEGDAPR-LNKMGGSD-WLKA 503

Query: 221  KTKGKVAIQKMVVDLMELYLHRLKQRRPPY-PKSPAMAEFTAQFPYEPTPDQKQAFIDVE 279
            K K + A+  M  +L+E+Y  R       + P +P   EF   FPYE TPDQ  A I+++
Sbjct: 504  KGKAEKAVADMAKELLEIYAQRKVASGFAFDPDTPWQKEFEDAFPYEETPDQLSAIIEIK 563

Query: 280  KDLTERETPMDRLICGDVGFGKTEVALRAIRCVVSAKKQAMVLAPTIVLAKQHFDVISER 339
             D+ E+  PMDRL+CGDVGFGKTEVA+RA    V   KQ  +L PT VLA+QH+  IS R
Sbjct: 564  SDM-EKSQPMDRLLCGDVGFGKTEVAIRAAYKAVMGGKQVAILVPTTVLAQQHYQTISAR 622

Query: 340  FAVYPDIKVGLLSRFQTKAEKEEHLESIKSGELDIIVGTHSLLGNRVVYSNLGLLVVDEE 399
            FA +  + V ++SRF+   E+   +E++ SG++D+++GTH +L + V++ N+GLL+VDEE
Sbjct: 623  FAGFGPV-VDVISRFRNAREQRGTIEALVSGQVDVLIGTHRILQSDVIFKNIGLLIVDEE 681

Query: 400  QRFGVKQKEKIATFKTSVDVLTLSATPIPRTLYLALTGFRDASLITTPPPERVPIKTHLS 459
            QRFGVKQKEK+  +   +DVLTLSATPIPRTL+++L G RD S+I TPP ER P+++++ 
Sbjct: 682  QRFGVKQKEKLKKWSAGIDVLTLSATPIPRTLHMSLVGARDMSIIETPPEERFPVQSYVV 741

Query: 460  SFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEVMEFLEESFPDVEIAIGHGKQYSKQLE 519
             +++E +  AIK EL RGGQV++V  R++ ++++   L E  PD +I + HG+   + LE
Sbjct: 742  EYNEEVMRDAIKRELKRGGQVYFVYNRVQTIDKMYRRLAEMLPDAKIRVAHGQMPEEMLE 801

Query: 520  DTMEKFALGEIKILISTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAY 579
              M  F  G   +L+ T+I+E+GLD+ NANTIIV D   FGL+QLYQ+RGRVGR+ + A+
Sbjct: 802  QAMLDFYEGTDDVLLCTSIIENGLDVPNANTIIVYDADHFGLSQLYQMRGRVGRSHRMAF 861

Query: 580  AYLLYPDKNLLSDQALERLSALEECRELGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVG 639
            AY  Y    +L++ A +RL A++E  ELG GF++A RD+ IRG G + G QQ G + +VG
Sbjct: 862  AYFTYRQDKVLTEVAEKRLQAIKEFAELGAGFKIAMRDLEIRGAGNLLGSQQHGHIVSVG 921

Query: 640  IDLFFEMLFESLSKVEEHRVVAVPYHSVQVDININPHLPSEYINHLENPMEIINEAERVA 699
             +++  +L E++ +++  R +  P   V ++ N++ ++  +YI+   + +EI    +R+A
Sbjct: 922  FEMYCRLLDEAVQQLKTGRTLEAPVEPV-LEFNVDAYISGDYISDAMHKIEIY---QRIA 977

Query: 700  E-KDTWSLMQFTENLRRQYGKEPRPMEVLLKKLYLRRMAADIGINRI 745
              ++   +    + L  ++G+ P  +  LL+ + ++  +  IGI  +
Sbjct: 978  ACRNEKHISDLVDELIDRFGEPPGCVLNLLEVVKIKNFSRAIGIRSV 1024


>I9LGA3_9FIRM (tr|I9LGA3) Transcription-repair coupling factor OS=Pelosinus
            fermentans B4 GN=FB4_2707 PE=4 SV=1
          Length = 1089

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 255/647 (39%), Positives = 403/647 (62%), Gaps = 17/647 (2%)

Query: 102  EKYIQLVKEQQQRGLQKLKGE-RVGKDGNFSYKVDPYTLRNGDYVVHKKVGIGMFIGIKM 160
            + ++ ++ E+   G QK K   RVGK    +Y  D   ++ GDYVVH   GIG ++G++ 
Sbjct: 392  QAHLLVIAEKDIMGRQKKKPRPRVGKGQQIAYFRD---IKIGDYVVHINHGIGKYVGVET 448

Query: 161  DVPKNSAEPTEYVFIEYADGMAKLPVKQSSKMLYRYCLPNENKKPKALSKLNDTSVWEKR 220
             +  N  +  +Y+ I YA G  KL V      L +  + +E   P+ L+K+  +  W K 
Sbjct: 449  LIVGNVHK--DYLHIRYA-GEDKLYVPTDQVHLLQKYIGSEGDAPR-LNKMGGSD-WLKA 503

Query: 221  KTKGKVAIQKMVVDLMELYLHRLKQRRPPY-PKSPAMAEFTAQFPYEPTPDQKQAFIDVE 279
            K K + A+  M  +L+E+Y  R       + P +P   EF   FPYE TPDQ  A I+++
Sbjct: 504  KGKAEKAVADMAKELLEIYAQRKVASGFAFDPDTPWQKEFEDAFPYEETPDQLSAIIEIK 563

Query: 280  KDLTERETPMDRLICGDVGFGKTEVALRAIRCVVSAKKQAMVLAPTIVLAKQHFDVISER 339
             D+ E+  PMDRL+CGDVGFGKTEVA+RA    V   KQ  +L PT VLA+QH+  IS R
Sbjct: 564  SDM-EKSQPMDRLLCGDVGFGKTEVAIRAAYKAVMGGKQVAILVPTTVLAQQHYQTISAR 622

Query: 340  FAVYPDIKVGLLSRFQTKAEKEEHLESIKSGELDIIVGTHSLLGNRVVYSNLGLLVVDEE 399
            FA +  + V ++SRF+   E+   +E++ SG++D+++GTH +L + V++ N+GLL+VDEE
Sbjct: 623  FAGFGPV-VDVISRFRNAREQRGTIEALVSGQVDVLIGTHRILQSDVIFKNIGLLIVDEE 681

Query: 400  QRFGVKQKEKIATFKTSVDVLTLSATPIPRTLYLALTGFRDASLITTPPPERVPIKTHLS 459
            QRFGVKQKEK+  +   +DVLTLSATPIPRTL+++L G RD S+I TPP ER P+++++ 
Sbjct: 682  QRFGVKQKEKLKKWSAGIDVLTLSATPIPRTLHMSLVGARDMSIIETPPEERFPVQSYVV 741

Query: 460  SFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEVMEFLEESFPDVEIAIGHGKQYSKQLE 519
             +++E +  AIK EL RGGQV++V  R++ ++++   L E  PD +I + HG+   + LE
Sbjct: 742  EYNEEVMRDAIKRELKRGGQVYFVYNRVQTIDKMYRRLAEMLPDAKIRVAHGQMPEEMLE 801

Query: 520  DTMEKFALGEIKILISTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAY 579
              M  F  G   +L+ T+I+E+GLD+ NANTIIV D   FGL+QLYQ+RGRVGR+ + A+
Sbjct: 802  QAMLDFYEGTDDVLLCTSIIENGLDVPNANTIIVYDADHFGLSQLYQMRGRVGRSHRMAF 861

Query: 580  AYLLYPDKNLLSDQALERLSALEECRELGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVG 639
            AY  Y    +L++ A +RL A++E  ELG GF++A RD+ IRG G + G QQ G + +VG
Sbjct: 862  AYFTYRQDKVLTEVAEKRLQAIKEFAELGAGFKIAMRDLEIRGAGNLLGSQQHGHIVSVG 921

Query: 640  IDLFFEMLFESLSKVEEHRVVAVPYHSVQVDININPHLPSEYINHLENPMEIINEAERVA 699
             +++  +L E++ +++  R +  P   V ++ N++ ++  +YI+   + +EI    +R+A
Sbjct: 922  FEMYCRLLDEAVQQLKTGRTLEAPVEPV-LEFNVDAYISGDYISDAMHKIEIY---QRIA 977

Query: 700  E-KDTWSLMQFTENLRRQYGKEPRPMEVLLKKLYLRRMAADIGINRI 745
              ++   +    + L  ++G+ P  +  LL+ + ++  +  IGI  +
Sbjct: 978  ACRNEKHISDLVDELIDRFGEPPGCVLNLLEVVKIKNFSRAIGIRSV 1024


>I8RUU3_9FIRM (tr|I8RUU3) Transcription-repair coupling factor OS=Pelosinus
            fermentans A11 GN=FA11_3134 PE=4 SV=1
          Length = 1089

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 255/647 (39%), Positives = 403/647 (62%), Gaps = 17/647 (2%)

Query: 102  EKYIQLVKEQQQRGLQKLKGE-RVGKDGNFSYKVDPYTLRNGDYVVHKKVGIGMFIGIKM 160
            + ++ ++ E+   G QK K   RVGK    +Y  D   ++ GDYVVH   GIG ++G++ 
Sbjct: 392  QAHLLVIAEKDIMGRQKKKPRPRVGKGQQIAYFRD---IKIGDYVVHINHGIGKYVGVET 448

Query: 161  DVPKNSAEPTEYVFIEYADGMAKLPVKQSSKMLYRYCLPNENKKPKALSKLNDTSVWEKR 220
             +  N  +  +Y+ I YA G  KL V      L +  + +E   P+ L+K+  +  W K 
Sbjct: 449  LIVGNVHK--DYLHIRYA-GEDKLYVPTDQVHLLQKYIGSEGDAPR-LNKMGGSD-WLKA 503

Query: 221  KTKGKVAIQKMVVDLMELYLHRLKQRRPPY-PKSPAMAEFTAQFPYEPTPDQKQAFIDVE 279
            K K + A+  M  +L+E+Y  R       + P +P   EF   FPYE TPDQ  A I+++
Sbjct: 504  KGKAEKAVADMAKELLEIYAQRKVASGFAFDPDTPWQKEFEDAFPYEETPDQLSAIIEIK 563

Query: 280  KDLTERETPMDRLICGDVGFGKTEVALRAIRCVVSAKKQAMVLAPTIVLAKQHFDVISER 339
             D+ E+  PMDRL+CGDVGFGKTEVA+RA    V   KQ  +L PT VLA+QH+  IS R
Sbjct: 564  SDM-EKSQPMDRLLCGDVGFGKTEVAIRAAYKAVMGGKQVAILVPTTVLAQQHYQTISAR 622

Query: 340  FAVYPDIKVGLLSRFQTKAEKEEHLESIKSGELDIIVGTHSLLGNRVVYSNLGLLVVDEE 399
            FA +  + V ++SRF+   E+   +E++ SG++D+++GTH +L + V++ N+GLL+VDEE
Sbjct: 623  FAGFGPV-VDVISRFRNAREQRGTIEALVSGQVDVLIGTHRILQSDVIFKNIGLLIVDEE 681

Query: 400  QRFGVKQKEKIATFKTSVDVLTLSATPIPRTLYLALTGFRDASLITTPPPERVPIKTHLS 459
            QRFGVKQKEK+  +   +DVLTLSATPIPRTL+++L G RD S+I TPP ER P+++++ 
Sbjct: 682  QRFGVKQKEKLKKWSAGIDVLTLSATPIPRTLHMSLVGARDMSIIETPPEERFPVQSYVV 741

Query: 460  SFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEVMEFLEESFPDVEIAIGHGKQYSKQLE 519
             +++E +  AIK EL RGGQV++V  R++ ++++   L E  PD +I + HG+   + LE
Sbjct: 742  EYNEEVMRDAIKRELKRGGQVYFVYNRVQTIDKMYRRLAEMLPDAKIRVAHGQMPEEMLE 801

Query: 520  DTMEKFALGEIKILISTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAY 579
              M  F  G   +L+ T+I+E+GLD+ NANTIIV D   FGL+QLYQ+RGRVGR+ + A+
Sbjct: 802  QAMLDFYEGTDDVLLCTSIIENGLDVPNANTIIVYDADHFGLSQLYQMRGRVGRSHRMAF 861

Query: 580  AYLLYPDKNLLSDQALERLSALEECRELGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVG 639
            AY  Y    +L++ A +RL A++E  ELG GF++A RD+ IRG G + G QQ G + +VG
Sbjct: 862  AYFTYRQDKVLTEVAEKRLQAIKEFAELGAGFKIAMRDLEIRGAGNLLGSQQHGHIVSVG 921

Query: 640  IDLFFEMLFESLSKVEEHRVVAVPYHSVQVDININPHLPSEYINHLENPMEIINEAERVA 699
             +++  +L E++ +++  R +  P   V ++ N++ ++  +YI+   + +EI    +R+A
Sbjct: 922  FEMYCRLLDEAVQQLKTGRTLEAPVEPV-LEFNVDAYISGDYISDAMHKIEIY---QRIA 977

Query: 700  E-KDTWSLMQFTENLRRQYGKEPRPMEVLLKKLYLRRMAADIGINRI 745
              ++   +    + L  ++G+ P  +  LL+ + ++  +  IGI  +
Sbjct: 978  ACRNEKHISDLVDELIDRFGEPPGCVLNLLEVVKIKNFSRAIGIRSV 1024


>G7LXI6_9CLOT (tr|G7LXI6) Transcription-repair coupling factor OS=Clostridium sp.
            DL-VIII GN=CDLVIII_0327 PE=4 SV=1
          Length = 1167

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 260/649 (40%), Positives = 401/649 (61%), Gaps = 23/649 (3%)

Query: 139  LRNGDYVVHKKVGIGMFIGIK-MDVPKNSAEPTEYVFIEYADGMAKLPVKQSSKMLYRYC 197
            L+ GDYVVH   GIG++ GIK +DV        +Y+ I Y  G  KL V      L +  
Sbjct: 503  LKPGDYVVHANHGIGVYKGIKQIDV---GGHKRDYLDIVYDKG-DKLYVPVDQLDLIQKY 558

Query: 198  LPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPYPK-SPAM 256
            + +E K PK ++KL  ++ W+K K K + +I ++  DL++LY  R   +   +PK +   
Sbjct: 559  IGSEGKSPK-VNKLG-SAEWQKAKAKARKSINEIAEDLVKLYAMRSTVKGHKFPKDTEWQ 616

Query: 257  AEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAIRCVVSAK 316
             +F  +FP+E TPDQ  +  ++++D+ E + PMDRL+CGDVG+GKTEVALRA    V   
Sbjct: 617  KQFEDEFPFEETPDQLTSLEEIKQDM-ESDKPMDRLLCGDVGYGKTEVALRAAFKAVMDG 675

Query: 317  KQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKSGELDIIV 376
            KQ  +L PT +LA+QH+  +  RF+ +P IK+ ++SRF+T  ++++ L+ +K G LDI++
Sbjct: 676  KQVAILVPTTILAEQHYKNMKNRFSDFP-IKIDMVSRFRTAKQQKDILQKVKEGNLDILI 734

Query: 377  GTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPRTLYLALT 436
            GTH L+   + + +LGLLVVDEEQRFGVKQKEKI   K +VDVLTLSATPIPRTL+++L+
Sbjct: 735  GTHRLVSKDIQFKDLGLLVVDEEQRFGVKQKEKIKGIKKNVDVLTLSATPIPRTLHMSLS 794

Query: 437  GFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEVMEF 496
            G RD S+I TPP ER P++T++   + + +  AI  E+ R GQV++V  R++ +E + ++
Sbjct: 795  GVRDISVIETPPEERYPVQTYVVEQNDQLIRDAILREIGRDGQVYFVYNRVEDIERMAKY 854

Query: 497  LEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNANTIIVQDV 556
            ++   P+ ++ + HG+   +QLE  M  F  GE  +L+ T I+E+G+DIQN NTII+ D 
Sbjct: 855  VQTLVPESKVGVAHGQMAERQLEKEMYDFMSGEYNVLVCTTIIETGMDIQNVNTIIIYDA 914

Query: 557  QQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQGFQLAER 616
             + GL+QLYQLRGRVGR+++ AYAYLLY    +L++ A +RL AL++  ELG GF++A R
Sbjct: 915  DKMGLSQLYQLRGRVGRSNRIAYAYLLYTKDKVLTEVAEKRLKALKDFTELGSGFKIAMR 974

Query: 617  DMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQVDININPH 676
            D+ IRG G + G  Q G + ++G DL+  ML E   K+ +  +   P  +  +DI ++  
Sbjct: 975  DLEIRGAGNMMGSSQHGHMASIGYDLYCRML-EDTVKILKGEIQKEPIETT-LDIKVDAF 1032

Query: 677  LPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLLKKLYLRRM 736
            +   YI      +E+  +   +   D ++ ++  E L  +Y K P P+  L+   Y++  
Sbjct: 1033 ISESYIEDEIQKIEVYKKIAAIEGIDDYNDIK--EELEDRYSKIPEPVYNLMDIAYIKSQ 1090

Query: 737  AADIGINRIYSSGKTVFMK----ANITKKVFKMMTDSMTSDIYRNSLVL 781
            A  I I  I  + K +  +     N  K +FK + D      Y+NS+VL
Sbjct: 1091 AKSIFIEEIKENSKEIIFRFAQDENGYKNIFKTLMDK-----YKNSVVL 1134


>Q034V2_LACC3 (tr|Q034V2) Transcription-repair coupling factor OS=Lactobacillus
            casei (strain ATCC 334) GN=LSEI_2547 PE=4 SV=1
          Length = 1174

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 253/639 (39%), Positives = 400/639 (62%), Gaps = 23/639 (3%)

Query: 139  LRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADG-MAKLPVKQSSKMLYRYC 197
            L+ GDYVVH   GIG + G  M+  +      +Y+ I Y +     +PV Q + ++ +Y 
Sbjct: 495  LKPGDYVVHVNHGIGQYTG--METLEVDGVHRDYITIVYRNNDKLFIPVDQLN-LVQKYV 551

Query: 198  LPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY-PKSPAM 256
              + + K  +++KL     W+K K K    I+ +  +L++LY  R  ++   + P     
Sbjct: 552  --SADGKTPSVNKLGGAE-WQKTKRKVAARIEDIADELIDLYAKREAEKGFAFGPDDDLQ 608

Query: 257  AEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAIRCVVSAK 316
             +F A+FPY  TPDQ ++  +++ D+ E+  PMDRL+ GDVGFGKTEVALRA    +   
Sbjct: 609  HKFEAEFPYPETPDQLRSAKEIKHDM-EKPKPMDRLLVGDVGFGKTEVALRAAFKAIDYG 667

Query: 317  KQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKSGELDIIV 376
            KQA +L PT +LA+QHFD + ERFA +P IKVGLLSRFQT  + +E ++ +K+G +DI+V
Sbjct: 668  KQAAILVPTTILAQQHFDTMKERFADFP-IKVGLLSRFQTAHQNKETIKGLKNGTIDIVV 726

Query: 377  GTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPRTLYLALT 436
            GTH LL   V + +LGLLV+DEEQRFGVK KE+I   K++VDVLTL+ATPIPRTL +++ 
Sbjct: 727  GTHRLLSKDVAFRDLGLLVIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSML 786

Query: 437  GFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEVMEF 496
            G RD S+I TPP  R PI+T +   +   +  AI+ E++RGGQVFY+  R++ +E  +  
Sbjct: 787  GVRDLSVIETPPTNRYPIQTFVMEQNPGVIREAIEREMERGGQVFYLHNRVEDMERTVSQ 846

Query: 497  LEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNANTIIVQDV 556
            LEE  PD  +   HG+    QLE+ +  F  G   +L++T I+E+G+D+ NANT+I+++ 
Sbjct: 847  LEELVPDASVGYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENA 906

Query: 557  QQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQGFQLAER 616
              +GL+QLYQLRGR+GR+ + AYAY +Y    +L++ A +RL A+++  ELG GF++A R
Sbjct: 907  DHYGLSQLYQLRGRIGRSSRVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSGFKIAMR 966

Query: 617  DMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQVDININPH 676
            D+ IRG G + G+QQ G + +VG DL+ +ML E+++K     + +      ++D+ +  +
Sbjct: 967  DLSIRGAGNLLGKQQHGFIDSVGYDLYTQMLQEAVNK--RRGIKSAEKTDAEIDLGLEAY 1024

Query: 677  LPSEYINHLENPMEIINEAERVAEKDT-WSLMQFTENLRRQYGKEPRPMEVLLKKLYLRR 735
            LP++Y+      +E+    +R+ E D+  +  + +E+L  ++G  P+P+  LL   +L+R
Sbjct: 1025 LPTDYVADSRQKIELY---KRIREADSDEAETEISEDLIDRFGDYPQPVTNLLAIAHLKR 1081

Query: 736  MAADIGINRIYSSGK--TVFMKANITKK-----VFKMMT 767
             A    +N +  +G+  TV + +  T K     +FK ++
Sbjct: 1082 FADLAWVNHVTKAGQKLTVVLSSQATAKAQGEPIFKALS 1120


>K6RMU2_LACCA (tr|K6RMU2) Transcription-repair coupling factor OS=Lactobacillus
            casei UCD174 GN=LCAUCD174_2748 PE=4 SV=1
          Length = 1174

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 253/639 (39%), Positives = 400/639 (62%), Gaps = 23/639 (3%)

Query: 139  LRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADG-MAKLPVKQSSKMLYRYC 197
            L+ GDYVVH   GIG + G  M+  +      +Y+ I Y +     +PV Q + ++ +Y 
Sbjct: 495  LKPGDYVVHVNHGIGQYTG--METLEVDGVHRDYITIVYRNNDKLFIPVDQLN-LVQKYV 551

Query: 198  LPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY-PKSPAM 256
              + + K  +++KL     W+K K K    I+ +  +L++LY  R  ++   + P     
Sbjct: 552  --SADGKTPSVNKLGGAE-WQKTKRKVAARIEDIADELIDLYAKREAEKGFAFGPDDDLQ 608

Query: 257  AEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAIRCVVSAK 316
             +F A+FPY  TPDQ ++  +++ D+ E+  PMDRL+ GDVGFGKTEVALRA    +   
Sbjct: 609  HKFEAEFPYPETPDQLRSAKEIKHDM-EKPKPMDRLLVGDVGFGKTEVALRAAFKAIDYG 667

Query: 317  KQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKSGELDIIV 376
            KQA +L PT +LA+QHFD + ERFA +P IKVGLLSRFQT  + +E ++ +K+G +DI+V
Sbjct: 668  KQAAILVPTTILAQQHFDTMKERFADFP-IKVGLLSRFQTAHQNKETIKGLKNGTIDIVV 726

Query: 377  GTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPRTLYLALT 436
            GTH LL   V + +LGLLV+DEEQRFGVK KE+I   K++VDVLTL+ATPIPRTL +++ 
Sbjct: 727  GTHRLLSKDVAFRDLGLLVIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSML 786

Query: 437  GFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEVMEF 496
            G RD S+I TPP  R PI+T +   +   +  AI+ E++RGGQVFY+  R++ +E  +  
Sbjct: 787  GVRDLSVIETPPTNRYPIQTFVMEQNPGVIREAIEREMERGGQVFYLHNRVEDMERTVSQ 846

Query: 497  LEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNANTIIVQDV 556
            LEE  PD  +   HG+    QLE+ +  F  G   +L++T I+E+G+D+ NANT+I+++ 
Sbjct: 847  LEELVPDASVGYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENA 906

Query: 557  QQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQGFQLAER 616
              +GL+QLYQLRGR+GR+ + AYAY +Y    +L++ A +RL A+++  ELG GF++A R
Sbjct: 907  DHYGLSQLYQLRGRIGRSSRVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSGFKIAMR 966

Query: 617  DMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQVDININPH 676
            D+ IRG G + G+QQ G + +VG DL+ +ML E+++K     + +      ++D+ +  +
Sbjct: 967  DLSIRGAGNLLGKQQHGFIDSVGYDLYTQMLQEAVNK--RRGIKSAEKTDAEIDLGLEAY 1024

Query: 677  LPSEYINHLENPMEIINEAERVAEKDT-WSLMQFTENLRRQYGKEPRPMEVLLKKLYLRR 735
            LP++Y+      +E+    +R+ E D+  +  + +E+L  ++G  P+P+  LL   +L+R
Sbjct: 1025 LPTDYVADSRQKIELY---KRIREADSDEAETEISEDLIDRFGDYPQPVTNLLAIAHLKR 1081

Query: 736  MAADIGINRIYSSGK--TVFMKANITKK-----VFKMMT 767
             A    +N +  +G+  TV + +  T K     +FK ++
Sbjct: 1082 FADLAWVNHVTKAGQKLTVVLSSQATAKAQGEPIFKALS 1120


>E1T145_THESX (tr|E1T145) Transcription-repair coupling factor
            OS=Thermoanaerobacter sp. (strain X513) GN=Thet_2333 PE=4
            SV=1
          Length = 1165

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 258/630 (40%), Positives = 390/630 (61%), Gaps = 19/630 (3%)

Query: 133  KVDPYT-LRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADG-MAKLPVKQSS 190
            K+  +T L  G YVVH   GIG + GI+    K      +Y+ I YA G    +PV+Q  
Sbjct: 494  KIKSFTELEIGSYVVHVNYGIGKYEGIEK--IKVDGIVRDYLKIIYAGGDTLFVPVEQLD 551

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
             ++ +Y  P +N  P  L+KL   S W K K K K A++ +  DL++LY  R   +   +
Sbjct: 552  -LVQKYVGPTDN--PPKLNKLG-GSEWLKAKRKAKKAVEDLAKDLIQLYAKRQMVKGHAF 607

Query: 251  -PKSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
             P +P   EF  QFPYE T DQ +   ++++D+ E++ PMDRL+CGDVG+GKTEVALRA 
Sbjct: 608  SPDTPWQKEFEEQFPYEETEDQLRCIKEIKEDM-EKDRPMDRLLCGDVGYGKTEVALRAA 666

Query: 310  RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKS 369
               V+  KQ   L PT +LA QH+    ERF  +P +K+ +LSRF+T  E+ + ++ +  
Sbjct: 667  FKAVADGKQVAFLCPTTILAYQHYANFIERFKEFP-VKIEMLSRFRTPKEQSKIIKELAE 725

Query: 370  GELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPR 429
            G +DIIVGTH LL N + + +LGLL++DEEQRFGV  KEKI   K ++DVLTLSATPIPR
Sbjct: 726  GNIDIIVGTHRLLQNDIKFKDLGLLIIDEEQRFGVVHKEKIKKLKENIDVLTLSATPIPR 785

Query: 430  TLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKG 489
            TL+++L G RD S++  PP +R P++T++  F++E +  AI  E+ RGGQV++V  R+ G
Sbjct: 786  TLHMSLIGIRDMSVLENPPEDRFPVETYVVEFNEELIKDAILREIARGGQVYFVYNRVNG 845

Query: 490  LEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNAN 549
            +E++  F+++  P   +A+ HG+    QLE  M  F  GE  +L+ST I+E+GLDI N N
Sbjct: 846  IEKMASFVKDLVPGCRVAVAHGQMEESQLEKVMIDFLNGEYDVLVSTTIIETGLDIPNVN 905

Query: 550  TIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQ 609
            TIIV D  + GL+QLYQLRGRVGR+++ AYAY  Y    +LS+ A +RL A++E  E G 
Sbjct: 906  TIIVYDADKLGLSQLYQLRGRVGRSNRLAYAYFTYRKDKVLSEVAEKRLEAIKEFTEFGS 965

Query: 610  GFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSV-- 667
            GF++A RD+ IRG G + G +Q G +  +G DL+ ++L E++  ++       P   +  
Sbjct: 966  GFKIAMRDLEIRGAGNLLGAEQHGHIDAIGYDLYLKLLEEAIRNLKGE----APKEEITT 1021

Query: 668  QVDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVL 727
             +DI +N ++ S YI      +E+  +   +  ++   +++ +E L  ++G  P+P+E L
Sbjct: 1022 TIDIKVNAYIDSSYIEDENLRLEMYKKIASIKSRE--DMIEISEELVDRFGDYPKPVEAL 1079

Query: 728  LKKLYLRRMAADIGINRIYSSGKTVFMKAN 757
            L+  YL+ +A+ + I  I   G +V +K N
Sbjct: 1080 LEIAYLKAIASQVNITEITEKGNSVILKFN 1109


>B0K468_THEPX (tr|B0K468) Transcription-repair coupling factor
            OS=Thermoanaerobacter sp. (strain X514) GN=Teth514_0593
            PE=4 SV=1
          Length = 1165

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 258/630 (40%), Positives = 390/630 (61%), Gaps = 19/630 (3%)

Query: 133  KVDPYT-LRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADG-MAKLPVKQSS 190
            K+  +T L  G YVVH   GIG + GI+    K      +Y+ I YA G    +PV+Q  
Sbjct: 494  KIKSFTELEIGSYVVHVNYGIGKYEGIEK--IKVDGIVRDYLKIIYAGGDTLFVPVEQLD 551

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
             ++ +Y  P +N  P  L+KL   S W K K K K A++ +  DL++LY  R   +   +
Sbjct: 552  -LVQKYVGPTDN--PPKLNKLG-GSEWLKAKRKAKKAVEDLAKDLIQLYAKRQMVKGHAF 607

Query: 251  -PKSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
             P +P   EF  QFPYE T DQ +   ++++D+ E++ PMDRL+CGDVG+GKTEVALRA 
Sbjct: 608  SPDTPWQKEFEEQFPYEETEDQLRCIKEIKEDM-EKDRPMDRLLCGDVGYGKTEVALRAA 666

Query: 310  RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKS 369
               V+  KQ   L PT +LA QH+    ERF  +P +K+ +LSRF+T  E+ + ++ +  
Sbjct: 667  FKAVADGKQVAFLCPTTILAYQHYANFIERFKEFP-VKIEMLSRFRTPKEQSKIIKELAE 725

Query: 370  GELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPR 429
            G +DIIVGTH LL N + + +LGLL++DEEQRFGV  KEKI   K ++DVLTLSATPIPR
Sbjct: 726  GNIDIIVGTHRLLQNDIKFKDLGLLIIDEEQRFGVVHKEKIKKLKENIDVLTLSATPIPR 785

Query: 430  TLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKG 489
            TL+++L G RD S++  PP +R P++T++  F++E +  AI  E+ RGGQV++V  R+ G
Sbjct: 786  TLHMSLIGIRDMSVLENPPEDRFPVETYVVEFNEELIKDAILREIARGGQVYFVYNRVNG 845

Query: 490  LEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNAN 549
            +E++  F+++  P   +A+ HG+    QLE  M  F  GE  +L+ST I+E+GLDI N N
Sbjct: 846  IEKMASFVKDLVPGCRVAVAHGQMEESQLEKVMIDFLNGEYDVLVSTTIIETGLDIPNVN 905

Query: 550  TIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQ 609
            TIIV D  + GL+QLYQLRGRVGR+++ AYAY  Y    +LS+ A +RL A++E  E G 
Sbjct: 906  TIIVYDADKLGLSQLYQLRGRVGRSNRLAYAYFTYRKDKVLSEVAEKRLEAIKEFTEFGS 965

Query: 610  GFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSV-- 667
            GF++A RD+ IRG G + G +Q G +  +G DL+ ++L E++  ++       P   +  
Sbjct: 966  GFKIAMRDLEIRGAGNLLGAEQHGHIDAIGYDLYLKLLEEAIRNLKGE----APKEEITT 1021

Query: 668  QVDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVL 727
             +DI +N ++ S YI      +E+  +   +  ++   +++ +E L  ++G  P+P+E L
Sbjct: 1022 TIDIKVNAYIDSSYIEDENLRLEMYKKIASIKSRE--DMIEISEELVDRFGDYPKPVEAL 1079

Query: 728  LKKLYLRRMAADIGINRIYSSGKTVFMKAN 757
            L+  YL+ +A+ + I  I   G +V +K N
Sbjct: 1080 LEIAYLKAIASQVNITEITEKGNSVILKFN 1109


>E1FA14_9THEO (tr|E1FA14) Transcription-repair coupling factor
            OS=Thermoanaerobacter sp. X561 GN=Teth561_PD0726 PE=4
            SV=1
          Length = 1165

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 258/630 (40%), Positives = 390/630 (61%), Gaps = 19/630 (3%)

Query: 133  KVDPYT-LRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADG-MAKLPVKQSS 190
            K+  +T L  G YVVH   GIG + GI+    K      +Y+ I YA G    +PV+Q  
Sbjct: 494  KIKSFTELEIGSYVVHVNYGIGKYEGIEK--IKVDGIVRDYLKIIYAGGDTLFVPVEQLD 551

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
             ++ +Y  P +N  P  L+KL   S W K K K K A++ +  DL++LY  R   +   +
Sbjct: 552  -LVQKYVGPTDN--PPKLNKLG-GSEWLKAKRKAKKAVEDLAKDLIQLYAKRQMVKGHAF 607

Query: 251  -PKSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
             P +P   EF  QFPYE T DQ +   ++++D+ E++ PMDRL+CGDVG+GKTEVALRA 
Sbjct: 608  SPDTPWQKEFEEQFPYEETEDQLRCIKEIKEDM-EKDRPMDRLLCGDVGYGKTEVALRAA 666

Query: 310  RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKS 369
               V+  KQ   L PT +LA QH+    ERF  +P +K+ +LSRF+T  E+ + ++ +  
Sbjct: 667  FKAVADGKQVAFLCPTTILAYQHYANFIERFKEFP-VKIEMLSRFRTPKEQSKIIKELAE 725

Query: 370  GELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPR 429
            G +DIIVGTH LL N + + +LGLL++DEEQRFGV  KEKI   K ++DVLTLSATPIPR
Sbjct: 726  GNIDIIVGTHRLLQNDIKFKDLGLLIIDEEQRFGVVHKEKIKKLKENIDVLTLSATPIPR 785

Query: 430  TLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKG 489
            TL+++L G RD S++  PP +R P++T++  F++E +  AI  E+ RGGQV++V  R+ G
Sbjct: 786  TLHMSLIGIRDMSVLENPPEDRFPVETYVVEFNEELIKDAILREIARGGQVYFVYNRVNG 845

Query: 490  LEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNAN 549
            +E++  F+++  P   +A+ HG+    QLE  M  F  GE  +L+ST I+E+GLDI N N
Sbjct: 846  IEKMASFVKDLVPGCRVAVAHGQMEESQLEKVMIDFLNGEYDVLVSTTIIETGLDIPNVN 905

Query: 550  TIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQ 609
            TIIV D  + GL+QLYQLRGRVGR+++ AYAY  Y    +LS+ A +RL A++E  E G 
Sbjct: 906  TIIVYDADKLGLSQLYQLRGRVGRSNRLAYAYFTYRKDKVLSEVAEKRLEAIKEFTEFGS 965

Query: 610  GFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSV-- 667
            GF++A RD+ IRG G + G +Q G +  +G DL+ ++L E++  ++       P   +  
Sbjct: 966  GFKIAMRDLEIRGAGNLLGAEQHGHIDAIGYDLYLKLLEEAIRNLKGE----APKEEITT 1021

Query: 668  QVDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVL 727
             +DI +N ++ S YI      +E+  +   +  ++   +++ +E L  ++G  P+P+E L
Sbjct: 1022 TIDIKVNAYIDSSYIEDENLRLEMYKKIASIKSRE--DMIEISEELVDRFGDYPKPVEAL 1079

Query: 728  LKKLYLRRMAADIGINRIYSSGKTVFMKAN 757
            L+  YL+ +A+ + I  I   G +V +K N
Sbjct: 1080 LEIAYLKAIASQVNITEITEKGNSVILKFN 1109


>E0I948_9BACL (tr|E0I948) Transcription-repair coupling factor (Precursor)
            OS=Paenibacillus curdlanolyticus YK9 GN=PaecuDRAFT_2182
            PE=4 SV=1
          Length = 1177

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 262/654 (40%), Positives = 407/654 (62%), Gaps = 46/654 (7%)

Query: 111  QQQRGLQKLKGERVGKDGNFSYKVDPYT-LRNGDYVVHKKVGIGMFIGIKMDVPKNSAEP 169
            Q+QR     K  RV K  + + ++  YT L+ GDYVVH+  GIG ++GI     +     
Sbjct: 464  QKQR-----KATRVDKKIDNAERIKSYTELKVGDYVVHQNHGIGKYLGI--GTLEIGGIH 516

Query: 170  TEYVFIEYADG-MAKLPVKQSSKMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAI 228
             +Y+ + YA G    +P++Q   M+ +Y + +E K+PK + KL     W + KTK + ++
Sbjct: 517  KDYMHVMYAGGDKLSVPIEQID-MIQKY-VGSEEKEPK-VYKLGGNE-WARVKTKVRSSV 572

Query: 229  QKMVVDLMELYLHRLKQRRPPYP---KSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTER 285
            + +  +L++LY  R  Q  P +     +P   EF A FPY+ T DQ +A  +++ D+ E 
Sbjct: 573  KDIADELIKLYADR--QASPGFAFGQDTPYQQEFEAMFPYDETRDQLRAIGEIKADM-EM 629

Query: 286  ETPMDRLICGDVGFGKTEVALRAIRCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPD 345
              PMDRL+CGDVG+GKTEVA+RA        KQ  +L PT +LA+QHF+   ERF+ YP 
Sbjct: 630  SRPMDRLLCGDVGYGKTEVAVRAAFKAAIEGKQVAILVPTTILAQQHFETFRERFSGYP- 688

Query: 346  IKVGLLSRFQTKAEKEEHLESIKSGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVK 405
              V +LSRF+++ E+ E ++ IK+G +DI++GTH LL   VV+ +LGLL+VDEEQRFGV 
Sbjct: 689  FNVQVLSRFRSRKEQNETMKGIKAGTVDIVIGTHRLLSQDVVFKDLGLLIVDEEQRFGVS 748

Query: 406  QKEKIATFKTSVDVLTLSATPIPRTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEK 465
             KEK+   KT+VDVLTL+ATPIPRTL++++ G RD S+I TPP  R P++T++  +S   
Sbjct: 749  HKEKLKRLKTNVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEYSAAL 808

Query: 466  VISAIKYELDRGGQVFYVLPRIKGLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKF 525
            V  +++ EL RGGQV+Y+  R++G+ ++ + ++   PD  +A+GHG+   ++LE T+  F
Sbjct: 809  VRESVERELARGGQVYYLYNRVQGIHQMADQIKALVPDARVAVGHGQMSEQELEKTILDF 868

Query: 526  ALGEIKILISTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYP 585
              GE  +L+ST+I+E+G+DI N NT+IV D  + GL+QLYQLRGRVGR+++ AYAY  Y 
Sbjct: 869  LDGESDVLVSTSIIETGVDIPNVNTLIVHDADKMGLSQLYQLRGRVGRSNRIAYAYFTYQ 928

Query: 586  DKNLLSDQALERLSALEECRELGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFE 645
               +L++ A +RL +++E  ELG GF++A RD+ IRG G + G +Q G + +VG DL+ +
Sbjct: 929  RDKVLTEVAEKRLQSIKEFTELGSGFKIAMRDLAIRGAGNLLGAEQHGFIASVGFDLYSQ 988

Query: 646  MLFESLSK----------VEEHRVVAVPYHSVQVDININPHLPSEYINHLENPMEIINEA 695
            ML + ++           VEE +V  V      +D++++ +LPS+YI      +EI  + 
Sbjct: 989  MLADEVAARKAQLDGAAPVEERKVATV------IDLSLDAYLPSDYIYDSIQKIEIYKKV 1042

Query: 696  ERVAEKDTWSLMQFTENLRRQ----YGKEPRPMEVLLKKLYLRRMAADIGINRI 745
              + +      ++ TE+LR +    +G  P  +E LL    L+   A+ GI +I
Sbjct: 1043 AAIRQ------IEETEDLRDELVDRFGDLPLAVENLLAVARLKAYGAEYGIEQI 1090


>R6P3R9_9CLOT (tr|R6P3R9) Transcription-repair coupling factor OS=Clostridium sp.
           CAG:306 GN=BN597_01343 PE=4 SV=1
          Length = 1045

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 254/642 (39%), Positives = 399/642 (62%), Gaps = 18/642 (2%)

Query: 139 LRNGDYVVHKKVGIGMFIGI-KMDVPKNSAEPTEYVFIEYADG-MAKLPVKQSSKMLYRY 196
           ++ G+YVVH+  G+G++ G+ K ++     +  +Y+ IEYA G    +P +Q + +L RY
Sbjct: 368 IKEGEYVVHQVHGVGLYKGLSKQEI---DGQLKDYLTIEYAQGDKLHMPAEQIN-LLVRY 423

Query: 197 CLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHR-LKQRRPPYPKSPA 255
                      LS++     W   KT+ K AI+ +  DL+ LY  R + Q     P +  
Sbjct: 424 --RGSGAVAPRLSRMGGND-WNITKTRAKKAIEDIAKDLLRLYAKREVAQGIAFEPDTVW 480

Query: 256 MAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAIRCVVSA 315
             E    F Y  TPDQ +A  + + D+ E E PMDRLIC DVGFGKTE+A+RAI   V +
Sbjct: 481 QCEMEEAFEYTETPDQMRAIQETKADM-ELEKPMDRLICADVGFGKTEIAIRAIFKAVMS 539

Query: 316 KKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKSGELDII 375
            KQA V+ PT +LA QH+  ISERF  +P ++V LLSRF+T  E++E ++ +  GE+D++
Sbjct: 540 GKQAAVIVPTTILAMQHWQTISERFKPFP-VRVELLSRFRTAKEQKETIKKLIKGEVDVV 598

Query: 376 VGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPRTLYLAL 435
           +GTH LL + +V+ +LGLLV+DEE RFGVK KEK+   + ++D+L++SATPIPRTLY++L
Sbjct: 599 IGTHRLLQDDIVFKDLGLLVIDEEHRFGVKHKEKLKMLRKNIDILSMSATPIPRTLYMSL 658

Query: 436 TGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEVME 495
           +G ++ S+I T P  R+PIKT++  +++  V +AI +ELDR GQVF++  R++ + E   
Sbjct: 659 SGIKNMSVINTAPMNRLPIKTYVGQYNETYVKNAINHELDRDGQVFFLYNRVETIYEFAA 718

Query: 496 FLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNANTIIVQD 555
            L++  P+  IA+ HG+  +K LE+ M ++A  +  IL+ T I+ESGLDI NANT+I+ D
Sbjct: 719 ELQKVVPNARIAVAHGQMDAKTLENIMLEYAEHKYDILLCTTIIESGLDIPNANTMIIYD 778

Query: 556 VQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQGFQLAE 615
             +FGLAQLYQLRGRVGR+D++AY Y  Y     L+ +AL+RL+A++E   LG G+Q+A 
Sbjct: 779 ADRFGLAQLYQLRGRVGRSDRQAYCYCFYKSHKKLTPEALQRLNAIKEFSTLGGGYQIAL 838

Query: 616 RDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQVDININP 675
           RD+ IRG G I G +Q G + +VG D + ++L E++++++E+     P     VDIN+  
Sbjct: 839 RDIEIRGVGNILGTKQHGHMTSVGFDTYCQLLEETINELQENG--EKPQPPAIVDINVTA 896

Query: 676 HLPSEYINHLENPMEIINEAERVAEKDTWSLMQFT-ENLRRQYGKEPRPMEVLLKKLYLR 734
            +P E++   E  M    E +R+A+  T   +    +  + ++ K P P+E L+K ++LR
Sbjct: 897 FIPDEWVGSKEQKM---IEYKRLADVKTLEELDLIHQEWKDRFSKIPEPVENLIKIIHLR 953

Query: 735 RMAADIGINRIYSSGKTVFMKANITKKVFKMMTDSMTSDIYR 776
            +A    I  I  +   + +    TK  + ++   +  +I +
Sbjct: 954 LLATQAKITLIRETSDNIRIYMPYTKAEWTIIASRLDRNITK 995


>A3DIQ2_CLOTH (tr|A3DIQ2) Transcription-repair coupling factor OS=Clostridium
            thermocellum (strain ATCC 27405 / DSM 1237) GN=Cthe_2632
            PE=4 SV=1
          Length = 1178

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 259/655 (39%), Positives = 406/655 (61%), Gaps = 21/655 (3%)

Query: 133  KVDPYT-LRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADG-MAKLPVKQSS 190
            K+  +T L  GDYVVH   GIG +IGI+  V +N  +  +Y+ I+Y+DG    +P  Q  
Sbjct: 501  KISVFTDLNVGDYVVHYVHGIGKYIGIEQLVVENVKK--DYLKIQYSDGDYLYVPTNQLD 558

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
             ++ +Y + +E K PK LSKL  T  W K + + K +++++  +L+ LY  R       +
Sbjct: 559  -LIQKY-IGSEGKTPK-LSKLGGTD-WAKTRARTKESLKELAQELINLYAQREMAEGHAF 614

Query: 251  PKSPAM-AEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
             K      +F   FPY+ T DQ +   ++++D+ E   PMDRL+CGDVG+GKTEVA+RA+
Sbjct: 615  GKDTVWQKQFEDLFPYQETEDQLRCIEEIKRDM-ESPRPMDRLLCGDVGYGKTEVAMRAV 673

Query: 310  RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKS 369
               V   KQ   L PT VLA+QH++   ER   +P I V +LSRF+T+AE++  L+ +K+
Sbjct: 674  FKAVMDGKQVAYLVPTTVLAQQHYNTFKERMKDFP-ITVEVLSRFRTQAEQKRILKDVKA 732

Query: 370  GELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPR 429
            G +D+++GTH LL   V + +LGLLV+DEEQRFGV  KEKI   KT++DVLTL+ATPIPR
Sbjct: 733  GMVDVLIGTHRLLQKDVCFKDLGLLVIDEEQRFGVTHKEKIKRMKTNIDVLTLTATPIPR 792

Query: 430  TLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKG 489
            TL+++L G RD S I  PP ER P++T++  ++ E V  AI  E+ RGGQVFY+  R++ 
Sbjct: 793  TLHMSLVGIRDISTIEEPPEERYPVQTYVMEYNDEVVRDAINREMSRGGQVFYLYNRVRA 852

Query: 490  LEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNAN 549
            + +    +++  P+  +AI HG+    +LE+ M +F  GE  IL+ T I+ESGLD+ N N
Sbjct: 853  INQKAAEIQKLVPEARVAIAHGQMNETELENIMFRFINGEYDILVCTTIIESGLDMPNVN 912

Query: 550  TIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQ 609
            TIIV+D  + GLAQLYQLRGRVGR+++ AYAY+ Y    +LS+ A +RL A++E  E G 
Sbjct: 913  TIIVEDADKMGLAQLYQLRGRVGRSNRLAYAYITYKKDKVLSEIAEKRLQAIKEFTEFGS 972

Query: 610  GFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHS--V 667
            GF++A RD+ +RG G + G QQ G + +VG D++ ++L E+   V E R + V      +
Sbjct: 973  GFKIAMRDLQLRGAGNLLGPQQHGHIDSVGYDMYCKLLAEA---VNELRGIPVTKEDEEI 1029

Query: 668  QVDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVL 727
             +D+N++ ++ ++YI      +++  +   +   D   ++   + L  +YG+ P+P++ L
Sbjct: 1030 SIDVNVSAYIDNDYIGDENQKIDMYKKIASI--NDEQDVIDAEDELMDRYGEIPQPVKNL 1087

Query: 728  LKKLYLRRMAADIGINRIYSSGKTVFMKANITKKV-FKMMTDSMTSDIYRNSLVL 781
            L+  Y++ +A   G + +     TV  + + +K + F+++   M  D YR  L+ 
Sbjct: 1088 LQIAYIKSLAKACGFSSVQEKNDTVIFQYSESKNINFEVLGKLM--DKYRRKLLF 1140


>E6UQV6_CLOTL (tr|E6UQV6) Transcription-repair coupling factor OS=Clostridium
            thermocellum (strain DSM 1313 / LMG 6656 / LQ8)
            GN=Clo1313_0220 PE=4 SV=1
          Length = 1178

 Score =  460 bits (1184), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 259/655 (39%), Positives = 406/655 (61%), Gaps = 21/655 (3%)

Query: 133  KVDPYT-LRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADG-MAKLPVKQSS 190
            K+  +T L  GDYVVH   GIG +IGI+  V +N  +  +Y+ I+Y+DG    +P  Q  
Sbjct: 501  KISVFTDLNVGDYVVHYVHGIGKYIGIEQLVVENVKK--DYLKIQYSDGDYLYVPTNQLD 558

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
             ++ +Y + +E K PK LSKL  T  W K + + K +++++  +L+ LY  R       +
Sbjct: 559  -LIQKY-IGSEGKTPK-LSKLGGTD-WAKTRARTKESLKELAQELINLYAQREMAEGHAF 614

Query: 251  PKSPAM-AEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
             K      +F   FPY+ T DQ +   ++++D+ E   PMDRL+CGDVG+GKTEVA+RA+
Sbjct: 615  GKDTVWQKQFEDLFPYQETEDQLRCIEEIKRDM-ESPRPMDRLLCGDVGYGKTEVAMRAV 673

Query: 310  RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKS 369
               V   KQ   L PT VLA+QH++   ER   +P I V +LSRF+T+AE++  L+ +K+
Sbjct: 674  FKAVMDGKQVAYLVPTTVLAQQHYNTFKERMKDFP-ITVEVLSRFRTQAEQKRILKDVKA 732

Query: 370  GELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPR 429
            G +D+++GTH LL   V + +LGLLV+DEEQRFGV  KEKI   KT++DVLTL+ATPIPR
Sbjct: 733  GMVDVLIGTHRLLQKDVCFKDLGLLVIDEEQRFGVTHKEKIKQMKTNIDVLTLTATPIPR 792

Query: 430  TLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKG 489
            TL+++L G RD S I  PP ER P++T++  ++ E V  AI  E+ RGGQVFY+  R++ 
Sbjct: 793  TLHMSLVGIRDISTIEEPPEERYPVQTYVMEYNDEVVRDAINREMSRGGQVFYLYNRVRA 852

Query: 490  LEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNAN 549
            + +    +++  P+  +AI HG+    +LE+ M +F  GE  IL+ T I+ESGLD+ N N
Sbjct: 853  INQKAAEIQKLVPEARVAIAHGQMNETELENIMFRFINGEYDILVCTTIIESGLDMPNVN 912

Query: 550  TIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQ 609
            TIIV+D  + GLAQLYQLRGRVGR+++ AYAY+ Y    +LS+ A +RL A++E  E G 
Sbjct: 913  TIIVEDADKMGLAQLYQLRGRVGRSNRLAYAYITYKKDKVLSEIAEKRLQAIKEFTEFGS 972

Query: 610  GFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHS--V 667
            GF++A RD+ +RG G + G QQ G + +VG D++ ++L E+   V E R + V      +
Sbjct: 973  GFKIAMRDLQLRGAGNLLGPQQHGHIDSVGYDMYCKLLAEA---VNELRGIPVTKEDEEI 1029

Query: 668  QVDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVL 727
             +D+N++ ++ ++YI      +++  +   +   D   ++   + L  +YG+ P+P++ L
Sbjct: 1030 SIDVNVSAYIDNDYIGDENQKIDMYKKIASI--NDEQDVIDAEDELMDRYGEIPQPVKNL 1087

Query: 728  LKKLYLRRMAADIGINRIYSSGKTVFMKANITKKV-FKMMTDSMTSDIYRNSLVL 781
            L+  Y++ +A   G + +     TV  + + +K + F+++   M  D YR  L+ 
Sbjct: 1088 LQIAYIKSLAKACGFSSVQEKNDTVIFQYSESKNINFEVLGKLM--DKYRRKLLF 1140


>H8EPN3_CLOTM (tr|H8EPN3) Transcription-repair coupling factor OS=Clostridium
            thermocellum YS GN=YSBL_2179 PE=4 SV=1
          Length = 1178

 Score =  460 bits (1184), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 259/655 (39%), Positives = 406/655 (61%), Gaps = 21/655 (3%)

Query: 133  KVDPYT-LRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADG-MAKLPVKQSS 190
            K+  +T L  GDYVVH   GIG +IGI+  V +N  +  +Y+ I+Y+DG    +P  Q  
Sbjct: 501  KISVFTDLNVGDYVVHYVHGIGKYIGIEQLVVENVKK--DYLKIQYSDGDYLYVPTNQLD 558

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
             ++ +Y + +E K PK LSKL  T  W K + + K +++++  +L+ LY  R       +
Sbjct: 559  -LIQKY-IGSEGKTPK-LSKLGGTD-WAKTRARTKESLKELAQELINLYAQREMAEGHAF 614

Query: 251  PKSPAM-AEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
             K      +F   FPY+ T DQ +   ++++D+ E   PMDRL+CGDVG+GKTEVA+RA+
Sbjct: 615  GKDTVWQKQFEDLFPYQETEDQLRCIEEIKRDM-ESPRPMDRLLCGDVGYGKTEVAMRAV 673

Query: 310  RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKS 369
               V   KQ   L PT VLA+QH++   ER   +P I V +LSRF+T+AE++  L+ +K+
Sbjct: 674  FKAVMDGKQVAYLVPTTVLAQQHYNTFKERMKDFP-ITVEVLSRFRTQAEQKRILKDVKA 732

Query: 370  GELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPR 429
            G +D+++GTH LL   V + +LGLLV+DEEQRFGV  KEKI   KT++DVLTL+ATPIPR
Sbjct: 733  GMVDVLIGTHRLLQKDVCFKDLGLLVIDEEQRFGVTHKEKIKQMKTNIDVLTLTATPIPR 792

Query: 430  TLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKG 489
            TL+++L G RD S I  PP ER P++T++  ++ E V  AI  E+ RGGQVFY+  R++ 
Sbjct: 793  TLHMSLVGIRDISTIEEPPEERYPVQTYVMEYNDEVVRDAINREMSRGGQVFYLYNRVRA 852

Query: 490  LEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNAN 549
            + +    +++  P+  +AI HG+    +LE+ M +F  GE  IL+ T I+ESGLD+ N N
Sbjct: 853  INQKAAEIQKLVPEARVAIAHGQMNETELENIMFRFINGEYDILVCTTIIESGLDMPNVN 912

Query: 550  TIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQ 609
            TIIV+D  + GLAQLYQLRGRVGR+++ AYAY+ Y    +LS+ A +RL A++E  E G 
Sbjct: 913  TIIVEDADKMGLAQLYQLRGRVGRSNRLAYAYITYKKDKVLSEIAEKRLQAIKEFTEFGS 972

Query: 610  GFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHS--V 667
            GF++A RD+ +RG G + G QQ G + +VG D++ ++L E+   V E R + V      +
Sbjct: 973  GFKIAMRDLQLRGAGNLLGPQQHGHIDSVGYDMYCKLLAEA---VNELRGIPVTKEDEEI 1029

Query: 668  QVDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVL 727
             +D+N++ ++ ++YI      +++  +   +   D   ++   + L  +YG+ P+P++ L
Sbjct: 1030 SIDVNVSAYIDNDYIGDENQKIDMYKKIASI--NDEQDVIDAEDELMDRYGEIPQPVKNL 1087

Query: 728  LKKLYLRRMAADIGINRIYSSGKTVFMKANITKKV-FKMMTDSMTSDIYRNSLVL 781
            L+  Y++ +A   G + +     TV  + + +K + F+++   M  D YR  L+ 
Sbjct: 1088 LQIAYIKSLAKACGFSSVQEKNDTVIFQYSESKNINFEVLGKLM--DKYRRKLLF 1140


>H8EEZ7_CLOTM (tr|H8EEZ7) Transcription-repair coupling factor OS=Clostridium
            thermocellum AD2 GN=AD2_0334 PE=4 SV=1
          Length = 1178

 Score =  460 bits (1184), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 259/655 (39%), Positives = 406/655 (61%), Gaps = 21/655 (3%)

Query: 133  KVDPYT-LRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADG-MAKLPVKQSS 190
            K+  +T L  GDYVVH   GIG +IGI+  V +N  +  +Y+ I+Y+DG    +P  Q  
Sbjct: 501  KISVFTDLNVGDYVVHYVHGIGKYIGIEQLVVENVKK--DYLKIQYSDGDYLYVPTNQLD 558

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
             ++ +Y + +E K PK LSKL  T  W K + + K +++++  +L+ LY  R       +
Sbjct: 559  -LIQKY-IGSEGKTPK-LSKLGGTD-WAKTRARTKESLKELAQELINLYAQREMAEGHAF 614

Query: 251  PKSPAM-AEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
             K      +F   FPY+ T DQ +   ++++D+ E   PMDRL+CGDVG+GKTEVA+RA+
Sbjct: 615  GKDTVWQKQFEDLFPYQETEDQLRCIEEIKRDM-ESPRPMDRLLCGDVGYGKTEVAMRAV 673

Query: 310  RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKS 369
               V   KQ   L PT VLA+QH++   ER   +P I V +LSRF+T+AE++  L+ +K+
Sbjct: 674  FKAVMDGKQVAYLVPTTVLAQQHYNTFKERMKDFP-ITVEVLSRFRTQAEQKRILKDVKA 732

Query: 370  GELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPR 429
            G +D+++GTH LL   V + +LGLLV+DEEQRFGV  KEKI   KT++DVLTL+ATPIPR
Sbjct: 733  GMVDVLIGTHRLLQKDVCFKDLGLLVIDEEQRFGVTHKEKIKQMKTNIDVLTLTATPIPR 792

Query: 430  TLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKG 489
            TL+++L G RD S I  PP ER P++T++  ++ E V  AI  E+ RGGQVFY+  R++ 
Sbjct: 793  TLHMSLVGIRDISTIEEPPEERYPVQTYVMEYNDEVVRDAINREMSRGGQVFYLYNRVRA 852

Query: 490  LEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNAN 549
            + +    +++  P+  +AI HG+    +LE+ M +F  GE  IL+ T I+ESGLD+ N N
Sbjct: 853  INQKAAEIQKLVPEARVAIAHGQMNETELENIMFRFINGEYDILVCTTIIESGLDMPNVN 912

Query: 550  TIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQ 609
            TIIV+D  + GLAQLYQLRGRVGR+++ AYAY+ Y    +LS+ A +RL A++E  E G 
Sbjct: 913  TIIVEDADKMGLAQLYQLRGRVGRSNRLAYAYITYKKDKVLSEIAEKRLQAIKEFTEFGS 972

Query: 610  GFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHS--V 667
            GF++A RD+ +RG G + G QQ G + +VG D++ ++L E+   V E R + V      +
Sbjct: 973  GFKIAMRDLQLRGAGNLLGPQQHGHIDSVGYDMYCKLLAEA---VNELRGIPVTKEDEEI 1029

Query: 668  QVDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVL 727
             +D+N++ ++ ++YI      +++  +   +   D   ++   + L  +YG+ P+P++ L
Sbjct: 1030 SIDVNVSAYIDNDYIGDENQKIDMYKKIASI--NDEQDVIDAEDELMDRYGEIPQPVKNL 1087

Query: 728  LKKLYLRRMAADIGINRIYSSGKTVFMKANITKKV-FKMMTDSMTSDIYRNSLVL 781
            L+  Y++ +A   G + +     TV  + + +K + F+++   M  D YR  L+ 
Sbjct: 1088 LQIAYIKSLAKACGFSSVQEKNDTVIFQYSESKNINFEVLGKLM--DKYRRKLLF 1140


>C7HBM5_CLOTM (tr|C7HBM5) Transcription-repair coupling factor OS=Clostridium
            thermocellum DSM 2360 GN=ClothDRAFT_0190 PE=4 SV=1
          Length = 1178

 Score =  460 bits (1184), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 259/655 (39%), Positives = 406/655 (61%), Gaps = 21/655 (3%)

Query: 133  KVDPYT-LRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADG-MAKLPVKQSS 190
            K+  +T L  GDYVVH   GIG +IGI+  V +N  +  +Y+ I+Y+DG    +P  Q  
Sbjct: 501  KISVFTDLNVGDYVVHYVHGIGKYIGIEQLVVENVKK--DYLKIQYSDGDYLYVPTNQLD 558

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
             ++ +Y + +E K PK LSKL  T  W K + + K +++++  +L+ LY  R       +
Sbjct: 559  -LIQKY-IGSEGKTPK-LSKLGGTD-WAKTRARTKESLKELAQELINLYAQREMAEGHAF 614

Query: 251  PKSPAM-AEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
             K      +F   FPY+ T DQ +   ++++D+ E   PMDRL+CGDVG+GKTEVA+RA+
Sbjct: 615  GKDTVWQKQFEDLFPYQETEDQLRCIEEIKRDM-ESPRPMDRLLCGDVGYGKTEVAMRAV 673

Query: 310  RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKS 369
               V   KQ   L PT VLA+QH++   ER   +P I V +LSRF+T+AE++  L+ +K+
Sbjct: 674  FKAVMDGKQVAYLVPTTVLAQQHYNTFKERMKDFP-ITVEVLSRFRTQAEQKRILKDVKA 732

Query: 370  GELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPR 429
            G +D+++GTH LL   V + +LGLLV+DEEQRFGV  KEKI   KT++DVLTL+ATPIPR
Sbjct: 733  GMVDVLIGTHRLLQKDVCFKDLGLLVIDEEQRFGVTHKEKIKQMKTNIDVLTLTATPIPR 792

Query: 430  TLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKG 489
            TL+++L G RD S I  PP ER P++T++  ++ E V  AI  E+ RGGQVFY+  R++ 
Sbjct: 793  TLHMSLVGIRDISTIEEPPEERYPVQTYVMEYNDEVVRDAINREMSRGGQVFYLYNRVRA 852

Query: 490  LEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNAN 549
            + +    +++  P+  +AI HG+    +LE+ M +F  GE  IL+ T I+ESGLD+ N N
Sbjct: 853  INQKAAEIQKLVPEARVAIAHGQMNETELENIMFRFINGEYDILVCTTIIESGLDMPNVN 912

Query: 550  TIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQ 609
            TIIV+D  + GLAQLYQLRGRVGR+++ AYAY+ Y    +LS+ A +RL A++E  E G 
Sbjct: 913  TIIVEDADKMGLAQLYQLRGRVGRSNRLAYAYITYKKDKVLSEIAEKRLQAIKEFTEFGS 972

Query: 610  GFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHS--V 667
            GF++A RD+ +RG G + G QQ G + +VG D++ ++L E+   V E R + V      +
Sbjct: 973  GFKIAMRDLQLRGAGNLLGPQQHGHIDSVGYDMYCKLLAEA---VNELRGIPVTKEDEEI 1029

Query: 668  QVDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVL 727
             +D+N++ ++ ++YI      +++  +   +   D   ++   + L  +YG+ P+P++ L
Sbjct: 1030 SIDVNVSAYIDNDYIGDENQKIDMYKKIASI--NDEQDVIDAEDELMDRYGEIPQPVKNL 1087

Query: 728  LKKLYLRRMAADIGINRIYSSGKTVFMKANITKKV-FKMMTDSMTSDIYRNSLVL 781
            L+  Y++ +A   G + +     TV  + + +K + F+++   M  D YR  L+ 
Sbjct: 1088 LQIAYIKSLAKACGFSSVQEKNDTVIFQYSESKNINFEVLGKLM--DKYRRKLLF 1140


>R5DWM2_9CLOT (tr|R5DWM2) Transcription-repair coupling factor OS=Clostridium sp.
            CAG:715 GN=BN763_01289 PE=4 SV=1
          Length = 1130

 Score =  460 bits (1184), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 254/642 (39%), Positives = 402/642 (62%), Gaps = 18/642 (2%)

Query: 139  LRNGDYVVHKKVGIGMFIGI-KMDVPKNSAEPTEYVFIEYAD-GMAKLPVKQSSKMLYRY 196
            ++ G+YVVH   G+G++ G+ + D+     +  +Y+ IEYA+     +P +Q + +L RY
Sbjct: 454  IKEGEYVVHSIHGVGIYKGLSQQDI---DGQLKDYLTIEYANKDRLHIPAEQIN-LLVRY 509

Query: 197  CLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY-PKSPA 255
               + + KPK LS++     WE  KT+ K  ++++  DL+ LY  R  Q    + P +  
Sbjct: 510  -RGSGSIKPK-LSRMGGKD-WENTKTRVKKEVEQVAYDLLRLYAKRKMQHGIQFLPDTTW 566

Query: 256  MAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAIRCVVSA 315
              E    F Y  TPDQ +A  DV+ D+ E E PMDRLICGDVGFGKTEVA+R I   +++
Sbjct: 567  QVEMEEAFEYTETPDQMKAINDVKADM-ESEQPMDRLICGDVGFGKTEVAMRGIFKAITS 625

Query: 316  KKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKSGELDII 375
             KQ  V+ PT +LA QH+  +S+RF  +  + V LLSRF++  E++E ++ + +GE D++
Sbjct: 626  GKQVAVVVPTTILAFQHYQTMSDRFKPFG-VHVELLSRFRSAKEQKETIKRLATGECDVV 684

Query: 376  VGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPRTLYLAL 435
            VGTH LL   +V+ +LGL+V+DEE RFGV+ KEK+   + ++D++T+SATPIPRTLY++L
Sbjct: 685  VGTHRLLQEGIVFKDLGLVVIDEEHRFGVRHKEKLKQLRENIDIITMSATPIPRTLYMSL 744

Query: 436  TGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEVME 495
            +G +D S+I TPP  R+PIKT++  +++  V +AI +ELDR GQVFY+  R++ ++E   
Sbjct: 745  SGIKDMSIINTPPKNRLPIKTYVGEWNENMVKNAITHELDREGQVFYLYNRVETIDEFKL 804

Query: 496  FLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNANTIIVQD 555
             L++  P+  IAIGHG+   K+LE  +  FA  E  IL++T I+E+G+DI NANT+I+ +
Sbjct: 805  QLQKLVPNARIAIGHGQMNEKELEKIIIDFANHEYDILLATTIIENGIDIPNANTMIIHN 864

Query: 556  VQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQGFQLAE 615
              +FGLAQLYQLRGRVGR+ ++AY Y  Y     ++  A++RL A++E   LG G+Q+A 
Sbjct: 865  ADKFGLAQLYQLRGRVGRSQRQAYCYCFYTKSKEITKDAVQRLKAIKEFTTLGSGYQIAM 924

Query: 616  RDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQVDININP 675
            RD+ IRG G I G +Q G + NVG D + ++L E++ +++   V         VDIN+  
Sbjct: 925  RDVEIRGVGNILGTKQHGHMVNVGFDTYCQLLEETVQELQGQAVEKS--EPTIVDINVTA 982

Query: 676  HLPSEYINHLENPMEIINEAERVAE-KDTWSLMQFTENLRRQYGKEPRPMEVLLKKLYLR 734
            ++P E++   E  M    E +R+A+ K    L   TE  + ++ K P  +E L+K + LR
Sbjct: 983  YIPDEWVGSAEQKM---IEYKRLADVKSDVELDYITEEWKDRFAKPPESVENLIKLIRLR 1039

Query: 735  RMAADIGINRIYSSGKTVFMKANITKKVFKMMTDSMTSDIYR 776
              A D+ I+ I  +   + +    ++  +K++   + S+I +
Sbjct: 1040 LSATDVRISLIRETEDNIRIYTPYSQAEWKLIQHKLPSEILK 1081


>B8D013_HALOH (tr|B8D013) Transcription-repair coupling factor OS=Halothermothrix
            orenii (strain H 168 / OCM 544 / DSM 9562) GN=Hore_21200
            PE=4 SV=1
          Length = 1170

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 263/626 (42%), Positives = 388/626 (61%), Gaps = 20/626 (3%)

Query: 139  LRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSSKMLYRYCL 198
            L+ GDYVVH+  GIG ++G+K    +   +  +Y+ ++YA G  KL V      L +  +
Sbjct: 503  LQVGDYVVHENHGIGKYLGVKTLAVQ--GQHKDYLVLKYA-GEDKLYVPTDQFNLVQKYI 559

Query: 199  PNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPYPKSPAM-A 257
              +NK PK L KL     W+K K K K ++++M + L+ELY  R   +   +        
Sbjct: 560  GADNKPPK-LYKLGGND-WKKVKQKVKESVKEMAIGLLELYAERETIKGYSFSDDTVWQK 617

Query: 258  EFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAIRCVVSAKK 317
            EF   FPYE TPDQ +A  +V+ D+ E  TPMDRL+CGDVG+GKTEVA+RA    V   K
Sbjct: 618  EFEEAFPYEETPDQLKAIEEVKNDM-ESATPMDRLLCGDVGYGKTEVAIRAAFKAVMDGK 676

Query: 318  QAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKSGELDIIVG 377
            Q  VL PT +LA+QH++  SER   YP I + ++SRF+T AE+ E L+ + +GE+DII+G
Sbjct: 677  QTAVLVPTTILAQQHYNTFSERMKNYP-INIEMISRFKTPAEQREVLKKLAAGEVDIIIG 735

Query: 378  THSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPRTLYLALTG 437
            TH LL   VV+++LGLL++DEEQRFGV  KEKI   K +VDVLT++ATPIPRTL++AL G
Sbjct: 736  THRLLSRDVVFNDLGLLIIDEEQRFGVSHKEKIKDLKRNVDVLTMTATPIPRTLHMALVG 795

Query: 438  FRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEVMEFL 497
             RD S+I TPP  R PI+T++  F+KE +  A++ EL R GQV++V  R++ ++E    +
Sbjct: 796  VRDMSVIETPPENRYPIRTYIREFNKELIRDAVRKELGREGQVYFVHNRVEDIQEQATMI 855

Query: 498  EESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNANTIIVQDVQ 557
            ++  P+  +A+ HG+    +LE  M  F   +  +L+ T I+E+GLDI N NTIIV    
Sbjct: 856  KKLVPECRVAVAHGQMNEHKLERLMLDFYNHQYDVLVCTTIIETGLDIPNVNTIIVNRAD 915

Query: 558  QFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQGFQLAERD 617
            Q GLAQLYQLRGRVGR+++ AYAYLLY    +L + A +RL A++E   LG GF++A RD
Sbjct: 916  QMGLAQLYQLRGRVGRSNRIAYAYLLYEKDRVLPEVAEKRLRAIKEFTNLGSGFKIAMRD 975

Query: 618  MGIRGFGTIFGEQQTGDVGNVGIDLFFEML---FESLSKVEEHRVVAVPYHSVQVDININ 674
            + IRG G + G +Q G + +VG  L+ ++L    E L   E+ + +      V+++++I+
Sbjct: 976  LEIRGAGNLLGPEQHGHIASVGFSLYCKLLEGAVEELKGKEKDKGIT----RVEIELDID 1031

Query: 675  PHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLLKKLYLR 734
             +LP EYI      ++I  +   +A KD   +    + L  ++G  P P+  LL    L+
Sbjct: 1032 AYLPDEYITDSRQKIDIYKKI--MALKDFEEVEDMIDELIDRFGDPPEPVLNLLGISKLK 1089

Query: 735  RMAADIGINRIYSSGKTV---FMKAN 757
              A+ +GI++I  + K V   FMK +
Sbjct: 1090 VKASKLGIDKISRNKKFVEFRFMKPD 1115


>K6SC65_LACCA (tr|K6SC65) Transcription-repair coupling factor OS=Lactobacillus
            casei Lc-10 GN=LCALC10_2452 PE=4 SV=1
          Length = 1174

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 253/639 (39%), Positives = 399/639 (62%), Gaps = 23/639 (3%)

Query: 139  LRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADG-MAKLPVKQSSKMLYRYC 197
            L+ GDYVVH   GIG + G  M+  +      +Y+ I Y +     +PV Q + ++ +Y 
Sbjct: 495  LKPGDYVVHVNHGIGQYTG--METLEVDGVHRDYITIVYRNNDKLCIPVDQLN-LVQKYV 551

Query: 198  LPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY-PKSPAM 256
              + + K  +++KL     W+K K K    I+ +  +L++LY  R  ++   + P     
Sbjct: 552  --SADGKTPSVNKLGGAE-WQKTKRKVAARIEDIADELIDLYAKREAEKGFAFGPDDDLQ 608

Query: 257  AEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAIRCVVSAK 316
             +F A+FPY  TPDQ ++  +++ D+ E+  PMDRL+ GDVGFGKTEVALRA    +   
Sbjct: 609  HKFEAEFPYPETPDQLRSAKEIKHDM-EKPKPMDRLLVGDVGFGKTEVALRAAFKAIDYG 667

Query: 317  KQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKSGELDIIV 376
            KQA +L PT +LA+QHFD + ERFA +P IKVGLLSRFQT  + +E ++ +K+G +DI+V
Sbjct: 668  KQAAILVPTTILAQQHFDTMKERFADFP-IKVGLLSRFQTAHQNKETIKGLKNGTIDIVV 726

Query: 377  GTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPRTLYLALT 436
            GTH LL   V + +LGLLV+DEEQRFGVK KE+I   K++VDVLTL+ATPIPRTL +++ 
Sbjct: 727  GTHRLLSKDVAFRDLGLLVIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSML 786

Query: 437  GFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEVMEF 496
            G RD S+I TPP  R PI+T +   +   +  AI+ E++RGGQVFY+  R++ +E  +  
Sbjct: 787  GVRDLSVIETPPTNRYPIQTFVMEQNPGVIREAIEREMERGGQVFYLHNRVEDMERTVSQ 846

Query: 497  LEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNANTIIVQDV 556
            LEE  PD  +   HG+    QLE+ +  F  G   +L++T I+E+G+D+ NANT+I+++ 
Sbjct: 847  LEELVPDASVGYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENA 906

Query: 557  QQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQGFQLAER 616
              +GL+QLYQLRGR+GR+ + AYAY +Y    +L++ A +RL A+++  ELG GF++A R
Sbjct: 907  DHYGLSQLYQLRGRIGRSSRVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSGFKIAMR 966

Query: 617  DMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQVDININPH 676
            D+ IRG G + G+QQ G + +VG DL+ +ML E+++K     + +      ++D+ +  +
Sbjct: 967  DLSIRGAGNLLGKQQHGFIDSVGYDLYTQMLQEAVNK--RRGIKSAEKTDAEIDLGLEAY 1024

Query: 677  LPSEYINHLENPMEIINEAERVAEKDT-WSLMQFTENLRRQYGKEPRPMEVLLKKLYLRR 735
            LP++Y+      +E+    +R+ E D+  +  + +E+L  ++G  P+P+  LL   +L+R
Sbjct: 1025 LPTDYVADSRQKIELY---KRIREADSDEAETEISEDLIDRFGDYPQPVTNLLAIAHLKR 1081

Query: 736  MAADIGINRIYSSGK--TVFMKANITKK-----VFKMMT 767
             A    +N +  +G+  TV +    T K     +FK ++
Sbjct: 1082 FADLAWVNHVTKAGQKLTVVLSPQATAKAQGEPIFKALS 1120


>K6R5X9_LACCA (tr|K6R5X9) Transcription-repair coupling factor OS=Lactobacillus
            casei A2-362 GN=LCAA2362_1737 PE=4 SV=1
          Length = 1174

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 253/639 (39%), Positives = 399/639 (62%), Gaps = 23/639 (3%)

Query: 139  LRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADG-MAKLPVKQSSKMLYRYC 197
            L+ GDYVVH   GIG + G  M+  +      +Y+ I Y +     +PV Q + ++ +Y 
Sbjct: 495  LKPGDYVVHVNHGIGQYTG--METLEVDGVHRDYITIVYRNNDKLFIPVDQLN-LVQKYV 551

Query: 198  LPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY-PKSPAM 256
              + + K  +++KL     W+K K K    I+ +  +L++LY  R  ++   + P     
Sbjct: 552  --SADGKTPSVNKLGGAE-WQKTKRKVAARIEDIADELIDLYAKREAEKGFAFGPDDDLQ 608

Query: 257  AEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAIRCVVSAK 316
             +F A+FPY  TPDQ ++  +++ D+ E+  PMDRL+ GDVGFGKTEVALRA    +   
Sbjct: 609  HKFEAEFPYPETPDQLRSAKEIKHDM-EKPKPMDRLLVGDVGFGKTEVALRAAFKAIDYG 667

Query: 317  KQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKSGELDIIV 376
            KQA +L PT +LA+QHFD + ERFA +P IKVGLLSRFQT  + +E ++ +K+G +DI+V
Sbjct: 668  KQAAILVPTTILAQQHFDTMKERFADFP-IKVGLLSRFQTAHQNKETIKGLKNGTIDIVV 726

Query: 377  GTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPRTLYLALT 436
            GTH LL   V + +LGLLV+DEEQRFGVK KE+I   K++VDVLTL+ATPIPRTL +++ 
Sbjct: 727  GTHRLLSKDVAFRDLGLLVIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSML 786

Query: 437  GFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEVMEF 496
            G RD S+I TPP  R PI+T +   +   +  AI+ E++RGGQVFY+  R++ +E  +  
Sbjct: 787  GVRDLSVIETPPTNRYPIQTFVMEQNPGVIREAIEREMERGGQVFYLHNRVEDMERTVSQ 846

Query: 497  LEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNANTIIVQDV 556
            LEE  PD  +   HG+    QLE+ +  F  G   +L++T I+E+G+D+ NANT+I+++ 
Sbjct: 847  LEELVPDASVGYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENA 906

Query: 557  QQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQGFQLAER 616
              +GL+QLYQLRGR+GR+ + AYAY +Y    +L++ A +RL A+++  ELG GF++A R
Sbjct: 907  DHYGLSQLYQLRGRIGRSSRVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSGFKIAMR 966

Query: 617  DMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQVDININPH 676
            D+ IRG G + G+QQ G + +VG DL+ +ML E+++K     + +      ++D+ +  +
Sbjct: 967  DLSIRGAGNLLGKQQHGFIDSVGYDLYTQMLQEAVNK--RRGIKSAEKTDAEIDLGLEAY 1024

Query: 677  LPSEYINHLENPMEIINEAERVAEKDT-WSLMQFTENLRRQYGKEPRPMEVLLKKLYLRR 735
            LP++Y+      +E+    +R+ E D+  +  + +E+L  ++G  P+P+  LL   +L+R
Sbjct: 1025 LPTDYVADSRQKIELY---KRIREADSDEAETEISEDLIDRFGDYPQPVTNLLAIAHLKR 1081

Query: 736  MAADIGINRIYSSGK--TVFMKANITKK-----VFKMMT 767
             A    +N +  +G+  TV +    T K     +FK ++
Sbjct: 1082 FADLAWVNHVTKAGQKLTVVLSPQATAKAQGEPIFKALS 1120


>K6QX37_LACCA (tr|K6QX37) Transcription-repair coupling factor OS=Lactobacillus
            casei CRF28 GN=LCACRF28_0026 PE=4 SV=1
          Length = 1174

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 253/639 (39%), Positives = 399/639 (62%), Gaps = 23/639 (3%)

Query: 139  LRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADG-MAKLPVKQSSKMLYRYC 197
            L+ GDYVVH   GIG + G  M+  +      +Y+ I Y +     +PV Q + ++ +Y 
Sbjct: 495  LKPGDYVVHVNHGIGQYTG--METLEVDGVHRDYITIVYRNNDKLFIPVDQLN-LVQKYV 551

Query: 198  LPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY-PKSPAM 256
              + + K  +++KL     W+K K K    I+ +  +L++LY  R  ++   + P     
Sbjct: 552  --SADGKTPSVNKLGGAE-WQKTKRKVAARIEDIADELIDLYAKREAEKGFAFGPDDDLQ 608

Query: 257  AEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAIRCVVSAK 316
             +F A+FPY  TPDQ ++  +++ D+ E+  PMDRL+ GDVGFGKTEVALRA    +   
Sbjct: 609  HKFEAEFPYPETPDQLRSAKEIKHDM-EKPKPMDRLLVGDVGFGKTEVALRAAFKAIDYG 667

Query: 317  KQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKSGELDIIV 376
            KQA +L PT +LA+QHFD + ERFA +P IKVGLLSRFQT  + +E ++ +K+G +DI+V
Sbjct: 668  KQAAILVPTTILAQQHFDTMKERFADFP-IKVGLLSRFQTAHQNKETIKGLKNGTIDIVV 726

Query: 377  GTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPRTLYLALT 436
            GTH LL   V + +LGLLV+DEEQRFGVK KE+I   K++VDVLTL+ATPIPRTL +++ 
Sbjct: 727  GTHRLLSKDVAFRDLGLLVIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSML 786

Query: 437  GFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEVMEF 496
            G RD S+I TPP  R PI+T +   +   +  AI+ E++RGGQVFY+  R++ +E  +  
Sbjct: 787  GVRDLSVIETPPTNRYPIQTFVMEQNPGVIREAIEREMERGGQVFYLHNRVEDMERTVSQ 846

Query: 497  LEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNANTIIVQDV 556
            LEE  PD  +   HG+    QLE+ +  F  G   +L++T I+E+G+D+ NANT+I+++ 
Sbjct: 847  LEELVPDASVGYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENA 906

Query: 557  QQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQGFQLAER 616
              +GL+QLYQLRGR+GR+ + AYAY +Y    +L++ A +RL A+++  ELG GF++A R
Sbjct: 907  DHYGLSQLYQLRGRIGRSSRVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSGFKIAMR 966

Query: 617  DMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQVDININPH 676
            D+ IRG G + G+QQ G + +VG DL+ +ML E+++K     + +      ++D+ +  +
Sbjct: 967  DLSIRGAGNLLGKQQHGFIDSVGYDLYTQMLQEAVNK--RRGIKSAEKTDAEIDLGLEAY 1024

Query: 677  LPSEYINHLENPMEIINEAERVAEKDT-WSLMQFTENLRRQYGKEPRPMEVLLKKLYLRR 735
            LP++Y+      +E+    +R+ E D+  +  + +E+L  ++G  P+P+  LL   +L+R
Sbjct: 1025 LPTDYVADSRQKIELY---KRIREADSDEAETEISEDLIDRFGDYPQPVTNLLAIAHLKR 1081

Query: 736  MAADIGINRIYSSGK--TVFMKANITKK-----VFKMMT 767
             A    +N +  +G+  TV +    T K     +FK ++
Sbjct: 1082 FADLAWVNHVTKAGQKLTVVLSPQATAKAQGEPIFKALS 1120


>K6Q8H2_LACCA (tr|K6Q8H2) Transcription-repair coupling factor OS=Lactobacillus
            casei 21/1 GN=LCA211_0114 PE=4 SV=1
          Length = 1174

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 253/639 (39%), Positives = 399/639 (62%), Gaps = 23/639 (3%)

Query: 139  LRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADG-MAKLPVKQSSKMLYRYC 197
            L+ GDYVVH   GIG + G  M+  +      +Y+ I Y +     +PV Q + ++ +Y 
Sbjct: 495  LKPGDYVVHVNHGIGQYTG--METLEVDGVHRDYITIVYRNNDKLFIPVDQLN-LVQKYV 551

Query: 198  LPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY-PKSPAM 256
              + + K  +++KL     W+K K K    I+ +  +L++LY  R  ++   + P     
Sbjct: 552  --SADGKTPSVNKLGGAE-WQKTKRKVAARIEDIADELIDLYAKREAEKGFAFGPDDDLQ 608

Query: 257  AEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAIRCVVSAK 316
             +F A+FPY  TPDQ ++  +++ D+ E+  PMDRL+ GDVGFGKTEVALRA    +   
Sbjct: 609  HKFEAEFPYPETPDQLRSAKEIKHDM-EKPKPMDRLLVGDVGFGKTEVALRAAFKAIDYG 667

Query: 317  KQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKSGELDIIV 376
            KQA +L PT +LA+QHFD + ERFA +P IKVGLLSRFQT  + +E ++ +K+G +DI+V
Sbjct: 668  KQAAILVPTTILAQQHFDTMKERFADFP-IKVGLLSRFQTAHQNKETIKGLKNGTIDIVV 726

Query: 377  GTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPRTLYLALT 436
            GTH LL   V + +LGLLV+DEEQRFGVK KE+I   K++VDVLTL+ATPIPRTL +++ 
Sbjct: 727  GTHRLLSKDVAFRDLGLLVIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSML 786

Query: 437  GFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEVMEF 496
            G RD S+I TPP  R PI+T +   +   +  AI+ E++RGGQVFY+  R++ +E  +  
Sbjct: 787  GVRDLSVIETPPTNRYPIQTFVMEQNPGVIREAIEREMERGGQVFYLHNRVEDMERTVSQ 846

Query: 497  LEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNANTIIVQDV 556
            LEE  PD  +   HG+    QLE+ +  F  G   +L++T I+E+G+D+ NANT+I+++ 
Sbjct: 847  LEELVPDASVGYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENA 906

Query: 557  QQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQGFQLAER 616
              +GL+QLYQLRGR+GR+ + AYAY +Y    +L++ A +RL A+++  ELG GF++A R
Sbjct: 907  DHYGLSQLYQLRGRIGRSSRVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSGFKIAMR 966

Query: 617  DMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQVDININPH 676
            D+ IRG G + G+QQ G + +VG DL+ +ML E+++K     + +      ++D+ +  +
Sbjct: 967  DLSIRGAGNLLGKQQHGFIDSVGYDLYTQMLQEAVNK--RRGIKSAEKTDAEIDLGLEAY 1024

Query: 677  LPSEYINHLENPMEIINEAERVAEKDT-WSLMQFTENLRRQYGKEPRPMEVLLKKLYLRR 735
            LP++Y+      +E+    +R+ E D+  +  + +E+L  ++G  P+P+  LL   +L+R
Sbjct: 1025 LPTDYVADSRQKIELY---KRIREADSDEAETEISEDLIDRFGDYPQPVTNLLAIAHLKR 1081

Query: 736  MAADIGINRIYSSGK--TVFMKANITKK-----VFKMMT 767
             A    +N +  +G+  TV +    T K     +FK ++
Sbjct: 1082 FADLAWVNHVTKAGQKLTVVLSPQATAKAQGEPIFKALS 1120


>K6P585_LACCA (tr|K6P585) Transcription-repair coupling factor OS=Lactobacillus
            casei 12A GN=LCA12A_0219 PE=4 SV=1
          Length = 1174

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 253/639 (39%), Positives = 399/639 (62%), Gaps = 23/639 (3%)

Query: 139  LRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADG-MAKLPVKQSSKMLYRYC 197
            L+ GDYVVH   GIG + G  M+  +      +Y+ I Y +     +PV Q + ++ +Y 
Sbjct: 495  LKPGDYVVHVNHGIGQYTG--METLEVDGVHRDYITIVYRNNDKLFIPVDQLN-LVQKYV 551

Query: 198  LPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY-PKSPAM 256
              + + K  +++KL     W+K K K    I+ +  +L++LY  R  ++   + P     
Sbjct: 552  --SADGKTPSVNKLGGAE-WQKTKRKVAARIEDIADELIDLYAKREAEKGFAFGPDDDLQ 608

Query: 257  AEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAIRCVVSAK 316
             +F A+FPY  TPDQ ++  +++ D+ E+  PMDRL+ GDVGFGKTEVALRA    +   
Sbjct: 609  HKFEAEFPYPETPDQLRSAKEIKHDM-EKPKPMDRLLVGDVGFGKTEVALRAAFKAIDYG 667

Query: 317  KQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKSGELDIIV 376
            KQA +L PT +LA+QHFD + ERFA +P IKVGLLSRFQT  + +E ++ +K+G +DI+V
Sbjct: 668  KQAAILVPTTILAQQHFDTMKERFADFP-IKVGLLSRFQTAHQNKETIKGLKNGTIDIVV 726

Query: 377  GTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPRTLYLALT 436
            GTH LL   V + +LGLLV+DEEQRFGVK KE+I   K++VDVLTL+ATPIPRTL +++ 
Sbjct: 727  GTHRLLSKDVAFRDLGLLVIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSML 786

Query: 437  GFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEVMEF 496
            G RD S+I TPP  R PI+T +   +   +  AI+ E++RGGQVFY+  R++ +E  +  
Sbjct: 787  GVRDLSVIETPPTNRYPIQTFVMEQNPGVIREAIEREMERGGQVFYLHNRVEDMERTVSQ 846

Query: 497  LEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNANTIIVQDV 556
            LEE  PD  +   HG+    QLE+ +  F  G   +L++T I+E+G+D+ NANT+I+++ 
Sbjct: 847  LEELVPDASVGYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENA 906

Query: 557  QQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQGFQLAER 616
              +GL+QLYQLRGR+GR+ + AYAY +Y    +L++ A +RL A+++  ELG GF++A R
Sbjct: 907  DHYGLSQLYQLRGRIGRSSRVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSGFKIAMR 966

Query: 617  DMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQVDININPH 676
            D+ IRG G + G+QQ G + +VG DL+ +ML E+++K     + +      ++D+ +  +
Sbjct: 967  DLSIRGAGNLLGKQQHGFIDSVGYDLYTQMLQEAVNK--RRGIKSAEKTDAEIDLGLEAY 1024

Query: 677  LPSEYINHLENPMEIINEAERVAEKDT-WSLMQFTENLRRQYGKEPRPMEVLLKKLYLRR 735
            LP++Y+      +E+    +R+ E D+  +  + +E+L  ++G  P+P+  LL   +L+R
Sbjct: 1025 LPTDYVADSRQKIELY---KRIREADSDEAETEISEDLIDRFGDYPQPVTNLLAIAHLKR 1081

Query: 736  MAADIGINRIYSSGK--TVFMKANITKK-----VFKMMT 767
             A    +N +  +G+  TV +    T K     +FK ++
Sbjct: 1082 FADLAWVNHVTKAGQKLTVVLSPQATAKAQGEPIFKALS 1120


>D1NPC5_CLOTM (tr|D1NPC5) Transcription-repair coupling factor OS=Clostridium
            thermocellum JW20 GN=Cther_0750 PE=4 SV=1
          Length = 1178

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 259/655 (39%), Positives = 406/655 (61%), Gaps = 21/655 (3%)

Query: 133  KVDPYT-LRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADG-MAKLPVKQSS 190
            K+  +T L  GDYVVH   GIG +IGI+  V +N  +  +Y+ I+Y+DG    +P  Q  
Sbjct: 501  KISVFTDLNVGDYVVHYVHGIGKYIGIEQLVVENVKK--DYLKIQYSDGDYLYVPTNQLD 558

Query: 191  KMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 250
             ++ +Y + +E K PK LSKL  T  W K + + K +++++  +L+ LY  R       +
Sbjct: 559  -LIQKY-IGSEGKTPK-LSKLGGTD-WAKTRARTKESLKELAQELINLYAQREMVEGHAF 614

Query: 251  PKSPAM-AEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAI 309
             K      +F   FPY+ T DQ +   ++++D+ E   PMDRL+CGDVG+GKTEVA+RA+
Sbjct: 615  GKDTVWQKQFEDLFPYQETEDQLRCIEEIKRDM-ESPRPMDRLLCGDVGYGKTEVAMRAV 673

Query: 310  RCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKS 369
               V   KQ   L PT VLA+QH++   ER   +P I V +LSRF+T+AE++  L+ +K+
Sbjct: 674  FKAVMDGKQVAYLVPTTVLAQQHYNTFKERMKDFP-ITVEVLSRFRTQAEQKRILKDVKA 732

Query: 370  GELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPR 429
            G +D+++GTH LL   V + +LGLLV+DEEQRFGV  KEKI   KT++DVLTL+ATPIPR
Sbjct: 733  GMVDVLIGTHRLLQKDVCFKDLGLLVIDEEQRFGVTHKEKIKQMKTNIDVLTLTATPIPR 792

Query: 430  TLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKG 489
            TL+++L G RD S I  PP ER P++T++  ++ E V  AI  E+ RGGQVFY+  R++ 
Sbjct: 793  TLHMSLVGIRDISTIEEPPEERYPVQTYVMEYNDEVVRDAINREMSRGGQVFYLYNRVRA 852

Query: 490  LEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNAN 549
            + +    +++  P+  +AI HG+    +LE+ M +F  GE  IL+ T I+ESGLD+ N N
Sbjct: 853  INQKAAEIQKLVPEARVAIAHGQMNETELENIMFRFINGEYDILVCTTIIESGLDMPNVN 912

Query: 550  TIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQ 609
            TIIV+D  + GLAQLYQLRGRVGR+++ AYAY+ Y    +LS+ A +RL A++E  E G 
Sbjct: 913  TIIVEDADKMGLAQLYQLRGRVGRSNRLAYAYITYKKDKVLSEIAEKRLQAIKEFTEFGS 972

Query: 610  GFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHS--V 667
            GF++A RD+ +RG G + G QQ G + +VG D++ ++L E+   V E R + V      +
Sbjct: 973  GFKIAMRDLQLRGAGNLLGPQQHGHIDSVGYDMYCKLLAEA---VNELRGIPVTKEDEEI 1029

Query: 668  QVDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVL 727
             +D+N++ ++ ++YI      +++  +   +   D   ++   + L  +YG+ P+P++ L
Sbjct: 1030 SIDVNVSAYIDNDYIGDENQKIDMYKKIASI--NDEQDVIDAEDELMDRYGEIPQPVKNL 1087

Query: 728  LKKLYLRRMAADIGINRIYSSGKTVFMKANITKKV-FKMMTDSMTSDIYRNSLVL 781
            L+  Y++ +A   G + +     TV  + + +K + F+++   M  D YR  L+ 
Sbjct: 1088 LQIAYIKSLAKACGFSSVQEKNDTVIFQYSESKNINFEVLGKLM--DKYRRKLLF 1140


>K6Q7T8_LACCA (tr|K6Q7T8) Transcription-repair coupling factor OS=Lactobacillus
            casei 32G GN=LCA32G_0301 PE=4 SV=1
          Length = 1174

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 253/639 (39%), Positives = 399/639 (62%), Gaps = 23/639 (3%)

Query: 139  LRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADG-MAKLPVKQSSKMLYRYC 197
            L+ GDYVVH   GIG + G  M+  +      +Y+ I Y +     +PV Q + ++ +Y 
Sbjct: 495  LKPGDYVVHVNHGIGQYTG--METLEVDGVHRDYITIVYRNNDKLFIPVDQLN-LVQKYV 551

Query: 198  LPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY-PKSPAM 256
              + + K  +++KL     W+K K K    I+ +  +L++LY  R  ++   + P     
Sbjct: 552  --SADGKTPSVNKLGGAE-WQKTKRKVAARIEDIADELIDLYAKREAEKGFAFGPDDDLQ 608

Query: 257  AEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAIRCVVSAK 316
             +F A+FPY  TPDQ ++  +++ D+ E+  PMDRL+ GDVGFGKTEVALRA    +   
Sbjct: 609  HKFEAEFPYPETPDQLRSAKEIKHDM-EKPKPMDRLLVGDVGFGKTEVALRAAFKAIDYG 667

Query: 317  KQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKSGELDIIV 376
            KQA +L PT +LA+QHFD + ERFA +P IKVGLLSRFQT  + +E ++ +K+G +DI+V
Sbjct: 668  KQAAILVPTTILAQQHFDTMKERFADFP-IKVGLLSRFQTAHQNKETIKGLKNGTIDIVV 726

Query: 377  GTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPRTLYLALT 436
            GTH LL   V + +LGLLV+DEEQRFGVK KE+I   K++VDVLTL+ATPIPRTL +++ 
Sbjct: 727  GTHRLLSKDVAFRDLGLLVIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSML 786

Query: 437  GFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEVMEF 496
            G RD S+I TPP  R PI+T +   +   +  AI+ E++RGGQVFY+  R++ +E  +  
Sbjct: 787  GVRDLSVIETPPTNRYPIQTFVMEQNPGVIREAIEREMERGGQVFYLHNRVEDMERTVSQ 846

Query: 497  LEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNANTIIVQDV 556
            LEE  PD  +   HG+    QLE+ +  F  G   +L++T I+E+G+D+ NANT+I+++ 
Sbjct: 847  LEELVPDASVGYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENA 906

Query: 557  QQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQGFQLAER 616
              +GL+QLYQLRGR+GR+ + AYAY +Y    +L++ A +RL A+++  ELG GF++A R
Sbjct: 907  DHYGLSQLYQLRGRIGRSSRVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSGFKIAMR 966

Query: 617  DMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQVDININPH 676
            D+ IRG G + G+QQ G + +VG DL+ +ML E+++K     + +      ++D+ +  +
Sbjct: 967  DLSIRGAGNLLGKQQHGFIDSVGYDLYTQMLQEAVNK--RRGIKSAEKTDAEIDLGLEAY 1024

Query: 677  LPSEYINHLENPMEIINEAERVAEKDT-WSLMQFTENLRRQYGKEPRPMEVLLKKLYLRR 735
            LP++Y+      +E+    +R+ E D+  +  + +E+L  ++G  P+P+  LL   +L+R
Sbjct: 1025 LPTDYVADSRQKIELY---KRIREADSDEAETEISEDLIDRFGDYPQPVTNLLAIAHLKR 1081

Query: 736  MAADIGINRIYSSGK--TVFMKANITKK-----VFKMMT 767
             A    +N +  +G+  TV +    T K     +FK ++
Sbjct: 1082 FADLAWVNHVTKAGQKLTVVLSPQATAKAQGEPIFKALS 1120


>C5F6L4_LACPA (tr|C5F6L4) Transcription-repair coupling factor OS=Lactobacillus
            paracasei subsp. paracasei 8700:2 GN=LBPG_01110 PE=4 SV=1
          Length = 1174

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 253/639 (39%), Positives = 399/639 (62%), Gaps = 23/639 (3%)

Query: 139  LRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADG-MAKLPVKQSSKMLYRYC 197
            L+ GDYVVH   GIG + G  M+  +      +Y+ I Y +     +PV Q + ++ +Y 
Sbjct: 495  LKPGDYVVHVNHGIGQYTG--METLEVDGVHRDYITIVYRNNDKLFIPVDQLN-LVQKYV 551

Query: 198  LPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY-PKSPAM 256
              + + K  +++KL     W+K K K    I+ +  +L++LY  R  ++   + P     
Sbjct: 552  --SADGKTPSVNKLGGAE-WQKTKRKVAARIEDIADELIDLYAKREAEKGFAFGPDDDLQ 608

Query: 257  AEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAIRCVVSAK 316
             +F A+FPY  TPDQ ++  +++ D+ E+  PMDRL+ GDVGFGKTEVALRA    +   
Sbjct: 609  HKFEAEFPYPETPDQLRSAKEIKHDM-EKPKPMDRLLVGDVGFGKTEVALRAAFKAIDYG 667

Query: 317  KQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKSGELDIIV 376
            KQA +L PT +LA+QHFD + ERFA +P IKVGLLSRFQT  + +E ++ +K+G +DI+V
Sbjct: 668  KQAAILVPTTILAQQHFDTMKERFADFP-IKVGLLSRFQTAHQNKETIKGLKNGTIDIVV 726

Query: 377  GTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPRTLYLALT 436
            GTH LL   V + +LGLLV+DEEQRFGVK KE+I   K++VDVLTL+ATPIPRTL +++ 
Sbjct: 727  GTHRLLSKDVAFRDLGLLVIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSML 786

Query: 437  GFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEVMEF 496
            G RD S+I TPP  R PI+T +   +   +  AI+ E++RGGQVFY+  R++ +E  +  
Sbjct: 787  GVRDLSVIETPPTNRYPIQTFVMEQNPGVIREAIEREMERGGQVFYLHNRVEDMERTVSQ 846

Query: 497  LEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNANTIIVQDV 556
            LEE  PD  +   HG+    QLE+ +  F  G   +L++T I+E+G+D+ NANT+I+++ 
Sbjct: 847  LEELVPDASVGYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENA 906

Query: 557  QQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQGFQLAER 616
              +GL+QLYQLRGR+GR+ + AYAY +Y    +L++ A +RL A+++  ELG GF++A R
Sbjct: 907  DHYGLSQLYQLRGRIGRSSRVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSGFKIAMR 966

Query: 617  DMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQVDININPH 676
            D+ IRG G + G+QQ G + +VG DL+ +ML E+++K     + +      ++D+ +  +
Sbjct: 967  DLSIRGAGNLLGKQQHGFIDSVGYDLYTQMLQEAVNK--RSGIKSAEKTDAEIDLGLEAY 1024

Query: 677  LPSEYINHLENPMEIINEAERVAEKDT-WSLMQFTENLRRQYGKEPRPMEVLLKKLYLRR 735
            LP++Y+      +E+    +R+ E D+  +  + +E+L  ++G  P+P+  LL   +L+R
Sbjct: 1025 LPTDYVADSRQKIELY---KRIREADSDEAETEISEDLIDRFGDYPQPVTNLLAIAHLKR 1081

Query: 736  MAADIGINRIYSSGK--TVFMKANITKK-----VFKMMT 767
             A    +N +  +G+  TV +    T K     +FK ++
Sbjct: 1082 FADLAWVNHVTKAGQKLTVVLSPQATAKAQGEPIFKALS 1120


>K6TA45_LACCA (tr|K6TA45) Transcription-repair coupling factor OS=Lactobacillus
            casei Lpc-37 GN=LCALPC37_1787 PE=4 SV=1
          Length = 1174

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 253/639 (39%), Positives = 399/639 (62%), Gaps = 23/639 (3%)

Query: 139  LRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADG-MAKLPVKQSSKMLYRYC 197
            L+ GDYVVH   GIG + G  M+  +      +Y+ I Y +     +PV Q + ++ +Y 
Sbjct: 495  LKPGDYVVHVNHGIGQYTG--METLEVDGVHRDYITIVYRNNDKLFIPVDQLN-LVQKYV 551

Query: 198  LPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY-PKSPAM 256
              + + K  +++KL     W+K K K    I+ +  +L++LY  R  ++   + P     
Sbjct: 552  --SADGKTPSVNKLGGAE-WQKTKRKVAARIEDIADELIDLYAKREAEKGFAFGPDDDLQ 608

Query: 257  AEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAIRCVVSAK 316
             +F A+FPY  TPDQ ++  +++ D+ E+  PMDRL+ GDVGFGKTEVALRA    +   
Sbjct: 609  HKFEAEFPYPETPDQLRSAKEIKHDM-EKPKPMDRLLVGDVGFGKTEVALRAAFKAIDYG 667

Query: 317  KQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKSGELDIIV 376
            KQA +L PT +LA+QHFD + ERFA +P IKVGLLSRFQT  + +E ++ +K+G +DI+V
Sbjct: 668  KQAAILVPTTILAQQHFDTMKERFADFP-IKVGLLSRFQTAHQNKETIKGLKNGTIDIVV 726

Query: 377  GTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPRTLYLALT 436
            GTH LL   V + +LGLLV+DEEQRFGVK KE+I   K++VDVLTL+ATPIPRTL +++ 
Sbjct: 727  GTHRLLSKDVAFRDLGLLVIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSML 786

Query: 437  GFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEVMEF 496
            G RD S+I TPP  R PI+T +   +   +  AI+ E++RGGQVFY+  R++ +E  +  
Sbjct: 787  GVRDLSVIETPPTNRYPIQTFVMEQNPGVIREAIEREMERGGQVFYLHNRVEDMERTVSQ 846

Query: 497  LEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNANTIIVQDV 556
            LEE  PD  +   HG+    QLE+ +  F  G   +L++T I+E+G+D+ NANT+I+++ 
Sbjct: 847  LEELVPDASVGYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENA 906

Query: 557  QQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQGFQLAER 616
              +GL+QLYQLRGR+GR+ + AYAY +Y    +L++ A +RL A+++  ELG GF++A R
Sbjct: 907  DHYGLSQLYQLRGRIGRSSRVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSGFKIAMR 966

Query: 617  DMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQVDININPH 676
            D+ IRG G + G+QQ G + +VG DL+ +ML E+++K     + +      ++D+ +  +
Sbjct: 967  DLSIRGAGNLLGKQQHGFIDSVGYDLYTQMLQEAVNK--RRGIKSAEKTDAEIDLGLEAY 1024

Query: 677  LPSEYINHLENPMEIINEAERVAEKDT-WSLMQFTENLRRQYGKEPRPMEVLLKKLYLRR 735
            LP++Y+      +E+    +R+ E D+  +  + +E+L  ++G  P+P+  LL   +L+R
Sbjct: 1025 LPTDYVADSRQKIELY---KRIREADSDEAETEISEDLIDRFGDYPQPVTNLLAIAHLKR 1081

Query: 736  MAADIGINRIYSSGK--TVFMKANITKK-----VFKMMT 767
             A    +N +  +G+  TV +    T K     +FK ++
Sbjct: 1082 FADLAWVNHVTKAGQKLTVVLSPQATTKAQGEPIFKALS 1120


>K6QWE6_LACCA (tr|K6QWE6) Transcription-repair coupling factor OS=Lactobacillus
            casei M36 GN=LCAM36_2195 PE=4 SV=1
          Length = 1174

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 253/639 (39%), Positives = 399/639 (62%), Gaps = 23/639 (3%)

Query: 139  LRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADG-MAKLPVKQSSKMLYRYC 197
            L+ GDYVVH   GIG + G  M+  +      +Y+ I Y +     +PV Q + ++ +Y 
Sbjct: 495  LKPGDYVVHVNHGIGQYTG--METLEVDGVHRDYITIVYRNNDKLFIPVDQLN-LVQKYV 551

Query: 198  LPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY-PKSPAM 256
              + + K  +++KL     W+K K K    I+ +  +L++LY  R  ++   + P     
Sbjct: 552  --SADGKTPSVNKLGGAE-WQKTKRKVAARIEDIADELIDLYAKREAEKGFAFGPDDDLQ 608

Query: 257  AEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAIRCVVSAK 316
             +F A+FPY  TPDQ ++  +++ D+ E+  PMDRL+ GDVGFGKTEVALRA    +   
Sbjct: 609  HKFEAEFPYPETPDQLRSAKEIKHDM-EKPKPMDRLLVGDVGFGKTEVALRAAFKAIDYG 667

Query: 317  KQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKSGELDIIV 376
            KQA +L PT +LA+QHFD + ERFA +P IKVGLLSRFQT  + +E ++ +K+G +DI+V
Sbjct: 668  KQAAILVPTTILAQQHFDTMKERFADFP-IKVGLLSRFQTAHQNKETIKGLKNGTIDIVV 726

Query: 377  GTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPRTLYLALT 436
            GTH LL   V + +LGLLV+DEEQRFGVK KE+I   K++VDVLTL+ATPIPRTL +++ 
Sbjct: 727  GTHRLLSKDVAFRDLGLLVIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSML 786

Query: 437  GFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEVMEF 496
            G RD S+I TPP  R PI+T +   +   +  AI+ E++RGGQVFY+  R++ +E  +  
Sbjct: 787  GVRDLSVIETPPTNRYPIQTFVMEQNPGVIREAIEREMERGGQVFYLHNRVEDMERTVSQ 846

Query: 497  LEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNANTIIVQDV 556
            LEE  PD  +   HG+    QLE+ +  F  G   +L++T I+E+G+D+ NANT+I+++ 
Sbjct: 847  LEELVPDASVGYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENA 906

Query: 557  QQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQGFQLAER 616
              +GL+QLYQLRGR+GR+ + AYAY +Y    +L++ A +RL A+++  ELG GF++A R
Sbjct: 907  DHYGLSQLYQLRGRIGRSSRVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSGFKIAMR 966

Query: 617  DMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQVDININPH 676
            D+ IRG G + G+QQ G + +VG DL+ +ML E+++K     + +      ++D+ +  +
Sbjct: 967  DLSIRGAGNLLGKQQHGFIDSVGYDLYTQMLQEAVNK--RRGIKSAEKTDAEIDLGLEAY 1024

Query: 677  LPSEYINHLENPMEIINEAERVAEKDT-WSLMQFTENLRRQYGKEPRPMEVLLKKLYLRR 735
            LP++Y+      +E+    +R+ E D+  +  + +E+L  ++G  P+P+  LL   +L+R
Sbjct: 1025 LPTDYVADSRQKIELY---KRIREADSDEAETEISEDLIDRFGDYPQPVTNLLAIAHLKR 1081

Query: 736  MAADIGINRIYSSGK--TVFMKANITKK-----VFKMMT 767
             A    +N +  +G+  TV +    T K     +FK ++
Sbjct: 1082 FADLAWVNHVTKAGQKLTVVLSPQATTKAQGEPIFKALS 1120


>F3M920_9BACL (tr|F3M920) Transcription-repair coupling factor OS=Paenibacillus sp.
            HGF5 GN=mfd PE=4 SV=1
          Length = 1175

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 259/658 (39%), Positives = 404/658 (61%), Gaps = 21/658 (3%)

Query: 107  LVKEQQQRGLQKLKGERVGKDGNFSYKVDPYT-LRNGDYVVHKKVGIGMFIGIKMDVPKN 165
            ++ E +    ++ K  +  K+ + + ++  YT L+ GDYVVH+  GIG ++GI     + 
Sbjct: 456  IITESEMFSSKQRKTRKTTKNMDNAERIKSYTELKVGDYVVHQNHGIGKYMGIG--TLEI 513

Query: 166  SAEPTEYVFIEYADGMAKLPVKQSSKMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGK 225
            +    +Y+ I YA G  KL V      L +  + +E+K+PK + KL     W + K K +
Sbjct: 514  NGIHKDYMHILYAGG-DKLSVPIEQIDLIQKYVGSEDKEPK-VYKLGGNE-WTRVKNKVR 570

Query: 226  VAIQKMVVDLMELYLHRLKQRRPPY---PKSPAMAEFTAQFPYEPTPDQKQAFIDVEKDL 282
             ++Q +  DL++LY  R  Q  P Y     +    EF   FPY+ TPDQ +A  +++KD+
Sbjct: 571  SSVQDIADDLIKLYAER--QSAPGYGFEKDTSEQQEFEDMFPYDETPDQLRAITEIKKDM 628

Query: 283  TERETPMDRLICGDVGFGKTEVALRAIRCVVSAKKQAMVLAPTIVLAKQHFDVISERFAV 342
             E+  PMDRL+CGDVG+GKTEVA+RA        KQ  VL PT +LA+QH++   ERFA 
Sbjct: 629  -EQNRPMDRLLCGDVGYGKTEVAVRAAFKAAIEGKQVAVLVPTTILAQQHYETFRERFAN 687

Query: 343  YPDIKVGLLSRFQTKAEKEEHLESIKSGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRF 402
            YP I + +LSRF+++ E+ E ++ +K G +DI++GTH LL   +V+ +LGLL+VDEEQRF
Sbjct: 688  YP-INIQVLSRFRSRKEQNETIKKVKQGSVDILIGTHRLLSQDIVFKDLGLLIVDEEQRF 746

Query: 403  GVKQKEKIATFKTSVDVLTLSATPIPRTLYLALTGFRDASLITTPPPERVPIKTHLSSFS 462
            GV  KEK+   KT+VDVLTL+ATPIPRTL++++ G RD S+I TPP  R P++T++   S
Sbjct: 747  GVTHKEKLKKLKTNVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEHS 806

Query: 463  KEKVISAIKYELDRGGQVFYVLPRIKGLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTM 522
            +  V  AI+ EL RGGQV+Y+  R++G++E+   +    P+  + +GHG+    +LE T+
Sbjct: 807  QTLVREAIERELARGGQVYYLYNRVQGIQEMAAQISMLVPEARVGVGHGQMSETELEKTI 866

Query: 523  EKFALGEIKILISTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYL 582
              F  GE  +L+ST+I+E+G+DI N NT+IV D  + GL+QLYQLRGRVGR+++ AYAY 
Sbjct: 867  LDFLDGEYDVLVSTSIIETGVDIPNVNTLIVHDADKMGLSQLYQLRGRVGRSNRIAYAYF 926

Query: 583  LYPDKNLLSDQALERLSALEECRELGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDL 642
             Y    +L++ A +RL +++E  ELG GF++A RD+ IRG G + G +Q G + +VG DL
Sbjct: 927  TYQRDKVLTEVAEKRLQSIKEFTELGSGFKIAMRDLSIRGAGNLLGAEQHGFIASVGFDL 986

Query: 643  FFEMLFESLSK-----VEEHRVVAVPYHSVQVDININPHLPSEYINHLENPMEIINEAER 697
            + +ML E + K     + E  + +  +++  +D+ I+ +LPS+YI      +EI  +   
Sbjct: 987  YSQMLAEEIQKRKVSMLGEPSLPSKDWNT-SIDLGIDAYLPSDYIYDSIQKIEIYKKVAV 1045

Query: 698  VAEKDTWSLMQFTENLRRQYGKEPRPMEVLLKKLYLRRMAADIGINRIYSSGKTVFMK 755
            V+  D  +  +  + L  ++G+ P  +  LL    L+      GI+ I   G  V ++
Sbjct: 1046 VSSIDESA--ELEDELLDRFGELPLAVSNLLAVSRLKVYGRTYGIDSITQRGDDVLLQ 1101


>K6S157_LACCA (tr|K6S157) Transcription-repair coupling factor OS=Lactobacillus
            casei UW1 GN=LCAUW1_2477 PE=4 SV=1
          Length = 1186

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 253/639 (39%), Positives = 399/639 (62%), Gaps = 23/639 (3%)

Query: 139  LRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADG-MAKLPVKQSSKMLYRYC 197
            L+ GDYVVH   GIG + G  M+  +      +Y+ I Y +     +PV Q + ++ +Y 
Sbjct: 495  LKPGDYVVHVNHGIGQYTG--METLEVDGVHRDYITIVYRNNDKLFIPVDQLN-LVQKYV 551

Query: 198  LPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY-PKSPAM 256
              + + K  +++KL     W+K K K    I+ +  +L++LY  R  ++   + P     
Sbjct: 552  --SADGKTPSVNKLGGAE-WQKTKRKVAARIEDIADELIDLYAKREAEKGFAFGPDDDLQ 608

Query: 257  AEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAIRCVVSAK 316
             +F A+FPY  TPDQ ++  +++ D+ E+  PMDRL+ GDVGFGKTEVALRA    +   
Sbjct: 609  HKFEAEFPYPETPDQLRSAKEIKHDM-EKPKPMDRLLVGDVGFGKTEVALRAAFKAIDYG 667

Query: 317  KQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKSGELDIIV 376
            KQA +L PT +LA+QHFD + ERFA +P IKVGLLSRFQT  + +E ++ +K+G +DI+V
Sbjct: 668  KQAAILVPTTILAQQHFDTMKERFADFP-IKVGLLSRFQTAHQNKETIKGLKNGTIDIVV 726

Query: 377  GTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPRTLYLALT 436
            GTH LL   V + +LGLLV+DEEQRFGVK KE+I   K++VDVLTL+ATPIPRTL +++ 
Sbjct: 727  GTHRLLSKDVAFRDLGLLVIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSML 786

Query: 437  GFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEVMEF 496
            G RD S+I TPP  R PI+T +   +   +  AI+ E++RGGQVFY+  R++ +E  +  
Sbjct: 787  GVRDLSVIETPPTNRYPIQTFVMEQNPGVIREAIEREMERGGQVFYLHNRVEDMERTVSQ 846

Query: 497  LEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNANTIIVQDV 556
            LEE  PD  +   HG+    QLE+ +  F  G   +L++T I+E+G+D+ NANT+I+++ 
Sbjct: 847  LEELVPDASVGYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENA 906

Query: 557  QQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQGFQLAER 616
              +GL+QLYQLRGR+GR+ + AYAY +Y    +L++ A +RL A+++  ELG GF++A R
Sbjct: 907  DHYGLSQLYQLRGRIGRSSRVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSGFKIAMR 966

Query: 617  DMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQVDININPH 676
            D+ IRG G + G+QQ G + +VG DL+ +ML E+++K     + +      ++D+ +  +
Sbjct: 967  DLSIRGAGNLLGKQQHGFIDSVGYDLYTQMLQEAVNK--RRGIKSAEKTDAEIDLGLEAY 1024

Query: 677  LPSEYINHLENPMEIINEAERVAEKDT-WSLMQFTENLRRQYGKEPRPMEVLLKKLYLRR 735
            LP++Y+      +E+    +R+ E D+  +  + +E+L  ++G  P+P+  LL   +L+R
Sbjct: 1025 LPTDYVADSRQKIELY---KRIREADSDEAETEISEDLIDRFGDYPQPVTNLLAIAHLKR 1081

Query: 736  MAADIGINRIYSSGK--TVFMKANITKK-----VFKMMT 767
             A    +N +  +G+  TV +    T K     +FK ++
Sbjct: 1082 FADLAWVNHVTKAGQKLTVVLSPQATAKAQGEPIFKALS 1120


>K6RFY9_LACCA (tr|K6RFY9) Transcription-repair coupling factor OS=Lactobacillus
            casei T71499 GN=LCAT71499_0666 PE=4 SV=1
          Length = 1174

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 253/639 (39%), Positives = 399/639 (62%), Gaps = 23/639 (3%)

Query: 139  LRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADG-MAKLPVKQSSKMLYRYC 197
            L+ GDYVVH   GIG + G  M+  +      +Y+ I Y +     +PV Q + ++ +Y 
Sbjct: 495  LKPGDYVVHVNHGIGQYTG--METLEVDGVHRDYITIVYRNNDKLFIPVDQLN-LVQKYV 551

Query: 198  LPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY-PKSPAM 256
              + + K  +++KL     W+K K K    I+ +  +L++LY  R  ++   + P     
Sbjct: 552  --SADGKTPSVNKLGGAE-WQKTKRKVAARIEDIADELIDLYAKREAEKGFAFGPDDDLQ 608

Query: 257  AEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAIRCVVSAK 316
             +F A+FPY  TPDQ ++  +++ D+ E+  PMDRL+ GDVGFGKTEVALRA    +   
Sbjct: 609  HKFEAEFPYPETPDQLRSAKEIKHDM-EKPKPMDRLLVGDVGFGKTEVALRAAFKAIDYG 667

Query: 317  KQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKSGELDIIV 376
            KQA +L PT +LA+QHFD + ERFA +P IKVGLLSRFQT  + +E ++ +K+G +DI+V
Sbjct: 668  KQAAILVPTTILAQQHFDTMKERFADFP-IKVGLLSRFQTAHQNKETIKGLKNGTIDIVV 726

Query: 377  GTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPRTLYLALT 436
            GTH LL   V + +LGLLV+DEEQRFGVK KE+I   K++VDVLTL+ATPIPRTL +++ 
Sbjct: 727  GTHRLLSKDVAFRDLGLLVIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSML 786

Query: 437  GFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEVMEF 496
            G RD S+I TPP  R PI+T +   +   +  AI+ E++RGGQVFY+  R++ +E  +  
Sbjct: 787  GVRDLSVIETPPTNRYPIQTFVMEQNPGVIREAIEREMERGGQVFYLHNRVEDMERTVSQ 846

Query: 497  LEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNANTIIVQDV 556
            LEE  PD  +   HG+    QLE+ +  F  G   +L++T I+E+G+D+ NANT+I+++ 
Sbjct: 847  LEELVPDASVGYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENA 906

Query: 557  QQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQGFQLAER 616
              +GL+QLYQLRGR+GR+ + AYAY +Y    +L++ A +RL A+++  ELG GF++A R
Sbjct: 907  DHYGLSQLYQLRGRIGRSSRVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSGFKIAMR 966

Query: 617  DMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQVDININPH 676
            D+ IRG G + G+QQ G + +VG DL+ +ML E+++K     + +      ++D+ +  +
Sbjct: 967  DLSIRGAGNLLGKQQHGFIDSVGYDLYTQMLQEAVNK--RRGIKSAEKTDAEIDLGLEAY 1024

Query: 677  LPSEYINHLENPMEIINEAERVAEKDT-WSLMQFTENLRRQYGKEPRPMEVLLKKLYLRR 735
            LP++Y+      +E+    +R+ E D+  +  + +E+L  ++G  P+P+  LL   +L+R
Sbjct: 1025 LPTDYVADSRQKIELY---KRIREADSDEAETEISEDLIDRFGDYPQPVTNLLAIAHLKR 1081

Query: 736  MAADIGINRIYSSGK--TVFMKANITKK-----VFKMMT 767
             A    +N +  +G+  TV +    T K     +FK ++
Sbjct: 1082 FADLAWVNHVTKAGQKLTVVLSPQATAKAQGEPIFKALS 1120


>K6S1K7_LACCA (tr|K6S1K7) Transcription-repair coupling factor OS=Lactobacillus
            casei UW4 GN=LCAUW4_2373 PE=4 SV=1
          Length = 1174

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 253/639 (39%), Positives = 399/639 (62%), Gaps = 23/639 (3%)

Query: 139  LRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADG-MAKLPVKQSSKMLYRYC 197
            L+ GDYVVH   GIG + G  M+  +      +Y+ I Y +     +PV Q + ++ +Y 
Sbjct: 495  LKPGDYVVHVNHGIGQYTG--METLEVDGVHRDYITIVYRNNDKLFIPVDQLN-LVQKYV 551

Query: 198  LPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY-PKSPAM 256
              + + K  +++KL     W+K K K    I+ +  +L++LY  R  ++   + P     
Sbjct: 552  --SADGKTPSVNKLGGAE-WQKTKRKVAARIEDIADELIDLYAKREAEKGFAFGPDDDLQ 608

Query: 257  AEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAIRCVVSAK 316
             +F A+FPY  TPDQ ++  +++ D+ E+  PMDRL+ GDVGFGKTEVALRA    +   
Sbjct: 609  HKFEAEFPYPETPDQLRSAKEIKHDM-EKPKPMDRLLVGDVGFGKTEVALRAAFKAIDYG 667

Query: 317  KQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKSGELDIIV 376
            KQA +L PT +LA+QHFD + ERFA +P IKVGLLSRFQT  + +E ++ +K+G +DI+V
Sbjct: 668  KQAAILVPTTILAQQHFDTMKERFADFP-IKVGLLSRFQTAHQNKETIKGLKNGTIDIVV 726

Query: 377  GTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPRTLYLALT 436
            GTH LL   V + +LGLLV+DEEQRFGVK KE+I   K++VDVLTL+ATPIPRTL +++ 
Sbjct: 727  GTHRLLSKDVAFRDLGLLVIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSML 786

Query: 437  GFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEVMEF 496
            G RD S+I TPP  R PI+T +   +   +  AI+ E++RGGQVFY+  R++ +E  +  
Sbjct: 787  GVRDLSVIETPPTNRYPIQTFVMEQNPGVIREAIEREMERGGQVFYLHNRVEDMERTVSQ 846

Query: 497  LEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNANTIIVQDV 556
            LEE  PD  +   HG+    QLE+ +  F  G   +L++T I+E+G+D+ NANT+I+++ 
Sbjct: 847  LEELVPDASVGYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENA 906

Query: 557  QQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQGFQLAER 616
              +GL+QLYQLRGR+GR+ + AYAY +Y    +L++ A +RL A+++  ELG GF++A R
Sbjct: 907  DHYGLSQLYQLRGRIGRSSRVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSGFKIAMR 966

Query: 617  DMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQVDININPH 676
            D+ IRG G + G+QQ G + +VG DL+ +ML E+++K     + +      ++D+ +  +
Sbjct: 967  DLSIRGAGNLLGKQQHGFIDSVGYDLYTQMLQEAVNK--RRGIKSAEKTDAEIDLGLEAY 1024

Query: 677  LPSEYINHLENPMEIINEAERVAEKDT-WSLMQFTENLRRQYGKEPRPMEVLLKKLYLRR 735
            LP++Y+      +E+    +R+ E D+  +  + +E+L  ++G  P+P+  LL   +L+R
Sbjct: 1025 LPTDYVADSRQKIELY---KRIREADSDEAETEISEDLIDRFGDYPQPVTNLLAIAHLKR 1081

Query: 736  MAADIGINRIYSSGK--TVFMKANITKK-----VFKMMT 767
             A    +N +  +G+  TV +    T K     +FK ++
Sbjct: 1082 FADLAWVNHVTKAGQKLTVVLSPQATAKAQGEPIFKALS 1120


>M1M7K1_9CLOT (tr|M1M7K1) Transcription-repair-coupling factor Mfd OS=Clostridium
            saccharoperbutylacetonicum N1-4(HMT) GN=mfd PE=4 SV=1
          Length = 1166

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 261/650 (40%), Positives = 404/650 (62%), Gaps = 23/650 (3%)

Query: 139  LRNGDYVVHKKVGIGMFIGIK-MDVPKNSAEPTEYVFIEYADGMAKLPVKQSSKMLYRYC 197
            L+ GDYVVH   G+G++ GIK +DV   +    +Y+ I Y  G  KL V      L +  
Sbjct: 502  LKPGDYVVHASHGVGVYKGIKQIDV---AGHKRDYLDIVYDKG-DKLYVPVDQLDLIQKY 557

Query: 198  LPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPYPK-SPAM 256
            + +E K PK ++KL  ++ W+K K K + +I ++  DL++LY  R   +   + K +   
Sbjct: 558  IGSEGKAPK-VNKLG-SAEWQKAKAKARKSINEIAEDLVKLYAMRSTVKGHKFSKDTEWQ 615

Query: 257  AEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAIRCVVSAK 316
             +F  +FP+E TPDQ  +  +++ D+ E E PMDRL+CGDVG+GKTEVALRA    V   
Sbjct: 616  KQFEDEFPFEETPDQLTSIEEIKLDM-ESEKPMDRLVCGDVGYGKTEVALRAAFKAVMDG 674

Query: 317  KQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKSGELDIIV 376
            KQ  +L PT +LA+QH+  I  RF+ +P IK+ ++SRF+T  +++E L+ +K G LDI++
Sbjct: 675  KQVAILVPTTILAEQHYKNIKNRFSDFP-IKIDMISRFKTTKQQKETLQKVKEGNLDILI 733

Query: 377  GTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPRTLYLALT 436
            GTH L+   + + +LGLL+VDEEQRFGVKQKEKI   K +VDVLTLSATPIPRTL+++L+
Sbjct: 734  GTHRLVSKDIQFKDLGLLIVDEEQRFGVKQKEKIKGIKKNVDVLTLSATPIPRTLHMSLS 793

Query: 437  GFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEVMEF 496
            G RD S+I TPP ER PI+T++   + + +  AI  E+ R GQV++V  R++ +E + ++
Sbjct: 794  GVRDISVIETPPEERYPIQTYVVEQNDQLIRDAILREIGRNGQVYFVYNRVEDIERMAKY 853

Query: 497  LEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNANTIIVQDV 556
            ++   P+ ++ + HG+   +QLE+ M  F  GE  +L+ T I+E+G+DIQN NTII+ D 
Sbjct: 854  VQALVPESKVGVAHGQMAERQLENVMIDFMSGEYNVLVCTTIIETGMDIQNVNTIIIYDA 913

Query: 557  QQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQGFQLAER 616
             + GL+QLYQLRGRVGR+++ AYAYLLY    +L++ A +RL AL++  ELG GF++A R
Sbjct: 914  DKMGLSQLYQLRGRVGRSNRIAYAYLLYTKDKVLTEVAEKRLKALKDFTELGSGFKIAMR 973

Query: 617  DMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQVDININPH 676
            D+ IRG G + G  Q G + ++G DL+  ML E   K+ +  +   P  +  +DI ++  
Sbjct: 974  DLEIRGAGNMMGSSQHGHMASIGYDLYCRML-EDTVKLIKGEIQKEPIETT-LDIKVDAF 1031

Query: 677  LPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLLKKLYLRRM 736
            +P  YI      +EI  +   +   + ++ ++  E L  +Y K P P+  L+   Y++  
Sbjct: 1032 IPESYIEDEIQKIEIYKKIAVIEGLEDYNDIK--EELEDRYSKIPEPVYNLMDIAYIKSQ 1089

Query: 737  AADIGINRIYSSGKTVFMK----ANITKKVFKMMTDSMTSDIYRNSLVLE 782
            A  I I  I  + K +  K     +  K +FK++ +      Y+NS+VL+
Sbjct: 1090 AKSIFIEEIKETPKEMLFKFAENESDYKNIFKILMEK-----YKNSVVLK 1134


>G1UBP7_LACCC (tr|G1UBP7) Transcription-repair coupling factor OS=Lactobacillus
            casei (strain LC2W) GN=mfd PE=4 SV=1
          Length = 1174

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 253/639 (39%), Positives = 398/639 (62%), Gaps = 23/639 (3%)

Query: 139  LRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADG-MAKLPVKQSSKMLYRYC 197
            L+ GDYVVH   GIG + G  M+  +      +Y+ I Y +     +PV Q + ++ +Y 
Sbjct: 495  LKPGDYVVHVNHGIGQYTG--METLEVDGVHRDYITIVYRNNDKLFIPVDQLN-LVQKYV 551

Query: 198  LPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY-PKSPAM 256
              + + K  +++KL     W+K K K    I+ +  +L++LY  R  ++   + P     
Sbjct: 552  --SADGKTPSVNKLGGAE-WQKTKRKVAARIEDIADELIDLYAKREAEKGFAFGPDDDLQ 608

Query: 257  AEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAIRCVVSAK 316
             +F A+FPY  TPDQ ++  +++ D+ E+  PMDRL+ GDVGFGKTEVALRA    +   
Sbjct: 609  HKFEAEFPYPETPDQLRSAKEIKHDM-EKPKPMDRLLVGDVGFGKTEVALRAAFKAIDYG 667

Query: 317  KQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKSGELDIIV 376
            KQA +L PT +LA+QHFD + ERFA +P IKVGLLSRFQT  + +E ++ +K+G +DI+V
Sbjct: 668  KQAAILVPTTILAQQHFDTMKERFADFP-IKVGLLSRFQTAHQNKETIKGLKNGTIDIVV 726

Query: 377  GTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPRTLYLALT 436
            GTH LL   V + +LGLLV+DEEQRFGVK KE+I   K++VDVLTL+ATPIPRTL +++ 
Sbjct: 727  GTHRLLSKDVAFRDLGLLVIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSML 786

Query: 437  GFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEVMEF 496
            G RD S+I TPP  R PI+T +   +   +  AI+ E++RGGQVFY+  R++ +E  +  
Sbjct: 787  GVRDLSVIETPPTNRYPIQTFVMEQNPGVIREAIEREMERGGQVFYLHNRVEDMERTVSQ 846

Query: 497  LEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNANTIIVQDV 556
            LEE  PD  +   HG+    QLE+ +  F  G   +L++T I+E+G+D+ NANT+I+++ 
Sbjct: 847  LEELVPDASVGYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENA 906

Query: 557  QQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQGFQLAER 616
              +GL+QLYQLRGR+GR+ + AYAY +Y    +L++ A +RL A++   ELG GF++A R
Sbjct: 907  DHYGLSQLYQLRGRIGRSSRVAYAYFMYQPMKVLNEVAEKRLQAIKNFTELGSGFKIAMR 966

Query: 617  DMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQVDININPH 676
            D+ IRG G + G+QQ G + +VG DL+ +ML E+++K     + +      ++D+ +  +
Sbjct: 967  DLSIRGAGNLLGKQQHGFIDSVGYDLYTQMLQEAVNK--RRGIKSAEKTDAEIDLGLEAY 1024

Query: 677  LPSEYINHLENPMEIINEAERVAEKDT-WSLMQFTENLRRQYGKEPRPMEVLLKKLYLRR 735
            LP++Y+      +E+    +R+ E D+  +  + +E+L  ++G  P+P+  LL   +L+R
Sbjct: 1025 LPTDYVADSRQKIELY---KRIREADSDEAETEISEDLIDRFGDYPQPVTNLLAIAHLKR 1081

Query: 736  MAADIGINRIYSSGK--TVFMKANITKK-----VFKMMT 767
             A    +N +  +G+  TV +    T K     +FK ++
Sbjct: 1082 FADLAWVNHVTKAGQKLTVVLSPQATAKAQGEPIFKALS 1120


>F2ML83_LACCD (tr|F2ML83) Transcription-repair coupling factor OS=Lactobacillus
            casei (strain BD-II) GN=mfd PE=4 SV=1
          Length = 1174

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 253/639 (39%), Positives = 398/639 (62%), Gaps = 23/639 (3%)

Query: 139  LRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADG-MAKLPVKQSSKMLYRYC 197
            L+ GDYVVH   GIG + G  M+  +      +Y+ I Y +     +PV Q + ++ +Y 
Sbjct: 495  LKPGDYVVHVNHGIGQYTG--METLEVDGVHRDYITIVYRNNDKLFIPVDQLN-LVQKYV 551

Query: 198  LPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY-PKSPAM 256
              + + K  +++KL     W+K K K    I+ +  +L++LY  R  ++   + P     
Sbjct: 552  --SADGKTPSVNKLGGAE-WQKTKRKVAARIEDIADELIDLYAKREAEKGFAFGPDDDLQ 608

Query: 257  AEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAIRCVVSAK 316
             +F A+FPY  TPDQ ++  +++ D+ E+  PMDRL+ GDVGFGKTEVALRA    +   
Sbjct: 609  HKFEAEFPYPETPDQLRSAKEIKHDM-EKPKPMDRLLVGDVGFGKTEVALRAAFKAIDYG 667

Query: 317  KQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKSGELDIIV 376
            KQA +L PT +LA+QHFD + ERFA +P IKVGLLSRFQT  + +E ++ +K+G +DI+V
Sbjct: 668  KQAAILVPTTILAQQHFDTMKERFADFP-IKVGLLSRFQTAHQNKETIKGLKNGTIDIVV 726

Query: 377  GTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPRTLYLALT 436
            GTH LL   V + +LGLLV+DEEQRFGVK KE+I   K++VDVLTL+ATPIPRTL +++ 
Sbjct: 727  GTHRLLSKDVAFRDLGLLVIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSML 786

Query: 437  GFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEVMEF 496
            G RD S+I TPP  R PI+T +   +   +  AI+ E++RGGQVFY+  R++ +E  +  
Sbjct: 787  GVRDLSVIETPPTNRYPIQTFVMEQNPGVIREAIEREMERGGQVFYLHNRVEDMERTVSQ 846

Query: 497  LEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNANTIIVQDV 556
            LEE  PD  +   HG+    QLE+ +  F  G   +L++T I+E+G+D+ NANT+I+++ 
Sbjct: 847  LEELVPDASVGYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENA 906

Query: 557  QQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQGFQLAER 616
              +GL+QLYQLRGR+GR+ + AYAY +Y    +L++ A +RL A++   ELG GF++A R
Sbjct: 907  DHYGLSQLYQLRGRIGRSSRVAYAYFMYQPMKVLNEVAEKRLQAIKNFTELGSGFKIAMR 966

Query: 617  DMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQVDININPH 676
            D+ IRG G + G+QQ G + +VG DL+ +ML E+++K     + +      ++D+ +  +
Sbjct: 967  DLSIRGAGNLLGKQQHGFIDSVGYDLYTQMLQEAVNK--RRGIKSAEKTDAEIDLGLEAY 1024

Query: 677  LPSEYINHLENPMEIINEAERVAEKDT-WSLMQFTENLRRQYGKEPRPMEVLLKKLYLRR 735
            LP++Y+      +E+    +R+ E D+  +  + +E+L  ++G  P+P+  LL   +L+R
Sbjct: 1025 LPTDYVADSRQKIELY---KRIREADSDEAETEISEDLIDRFGDYPQPVTNLLAIAHLKR 1081

Query: 736  MAADIGINRIYSSGK--TVFMKANITKK-----VFKMMT 767
             A    +N +  +G+  TV +    T K     +FK ++
Sbjct: 1082 FADLAWVNHVTKAGQKLTVVLSPQATAKAQGEPIFKALS 1120


>B3WAP6_LACCB (tr|B3WAP6) Transcription-repair coupling factor (TRCF)
            OS=Lactobacillus casei (strain BL23) GN=mfd PE=4 SV=1
          Length = 1174

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 253/639 (39%), Positives = 398/639 (62%), Gaps = 23/639 (3%)

Query: 139  LRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADG-MAKLPVKQSSKMLYRYC 197
            L+ GDYVVH   GIG + G  M+  +      +Y+ I Y +     +PV Q + ++ +Y 
Sbjct: 495  LKPGDYVVHVNHGIGQYTG--METLEVDGVHRDYITIVYRNNDKLFIPVDQLN-LVQKYV 551

Query: 198  LPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY-PKSPAM 256
              + + K  +++KL     W+K K K    I+ +  +L++LY  R  ++   + P     
Sbjct: 552  --SADGKTPSVNKLGGAE-WQKTKRKVAARIEDIADELIDLYAKREAEKGFAFGPDDDLQ 608

Query: 257  AEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAIRCVVSAK 316
             +F A+FPY  TPDQ ++  +++ D+ E+  PMDRL+ GDVGFGKTEVALRA    +   
Sbjct: 609  HKFEAEFPYPETPDQLRSAKEIKHDM-EKPKPMDRLLVGDVGFGKTEVALRAAFKAIDYG 667

Query: 317  KQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKSGELDIIV 376
            KQA +L PT +LA+QHFD + ERFA +P IKVGLLSRFQT  + +E ++ +K+G +DI+V
Sbjct: 668  KQAAILVPTTILAQQHFDTMKERFADFP-IKVGLLSRFQTAHQNKETIKGLKNGTIDIVV 726

Query: 377  GTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPRTLYLALT 436
            GTH LL   V + +LGLLV+DEEQRFGVK KE+I   K++VDVLTL+ATPIPRTL +++ 
Sbjct: 727  GTHRLLSKDVAFRDLGLLVIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSML 786

Query: 437  GFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEVMEF 496
            G RD S+I TPP  R PI+T +   +   +  AI+ E++RGGQVFY+  R++ +E  +  
Sbjct: 787  GVRDLSVIETPPTNRYPIQTFVMEQNPGVIREAIEREMERGGQVFYLHNRVEDMERTVSQ 846

Query: 497  LEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNANTIIVQDV 556
            LEE  PD  +   HG+    QLE+ +  F  G   +L++T I+E+G+D+ NANT+I+++ 
Sbjct: 847  LEELVPDASVGYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENA 906

Query: 557  QQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQGFQLAER 616
              +GL+QLYQLRGR+GR+ + AYAY +Y    +L++ A +RL A++   ELG GF++A R
Sbjct: 907  DHYGLSQLYQLRGRIGRSSRVAYAYFMYQPMKVLNEVAEKRLQAIKNFTELGSGFKIAMR 966

Query: 617  DMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQVDININPH 676
            D+ IRG G + G+QQ G + +VG DL+ +ML E+++K     + +      ++D+ +  +
Sbjct: 967  DLSIRGAGNLLGKQQHGFIDSVGYDLYTQMLQEAVNK--RRGIKSAEKTDAEIDLGLEAY 1024

Query: 677  LPSEYINHLENPMEIINEAERVAEKDT-WSLMQFTENLRRQYGKEPRPMEVLLKKLYLRR 735
            LP++Y+      +E+    +R+ E D+  +  + +E+L  ++G  P+P+  LL   +L+R
Sbjct: 1025 LPTDYVADSRQKIELY---KRIREADSDEAETEISEDLIDRFGDYPQPVTNLLAIAHLKR 1081

Query: 736  MAADIGINRIYSSGK--TVFMKANITKK-----VFKMMT 767
             A    +N +  +G+  TV +    T K     +FK ++
Sbjct: 1082 FADLAWVNHVTKAGQKLTVVLSPQATAKAQGEPIFKALS 1120


>K0MXW9_LACCA (tr|K0MXW9) Transcription-repair-coupling factor OS=Lactobacillus
            casei W56 GN=mfd PE=4 SV=1
          Length = 1174

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 253/639 (39%), Positives = 398/639 (62%), Gaps = 23/639 (3%)

Query: 139  LRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADG-MAKLPVKQSSKMLYRYC 197
            L+ GDYVVH   GIG + G  M+  +      +Y+ I Y +     +PV Q + ++ +Y 
Sbjct: 495  LKPGDYVVHVNHGIGQYTG--METLEVDGVHRDYITIVYRNNDKLFIPVDQLN-LVQKYV 551

Query: 198  LPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY-PKSPAM 256
              + + K  +++KL     W+K K K    I+ +  +L++LY  R  ++   + P     
Sbjct: 552  --SADGKTPSVNKLGGAE-WQKTKRKVAARIEDIADELIDLYAKREAEKGFAFGPDDDLQ 608

Query: 257  AEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAIRCVVSAK 316
             +F A+FPY  TPDQ ++  +++ D+ E+  PMDRL+ GDVGFGKTEVALRA    +   
Sbjct: 609  HKFEAEFPYPETPDQLRSAKEIKHDM-EKPKPMDRLLVGDVGFGKTEVALRAAFKAIDYG 667

Query: 317  KQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKSGELDIIV 376
            KQA +L PT +LA+QHFD + ERFA +P IKVGLLSRFQT  + +E ++ +K+G +DI+V
Sbjct: 668  KQAAILVPTTILAQQHFDTMKERFADFP-IKVGLLSRFQTAHQNKETIKGLKNGTIDIVV 726

Query: 377  GTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPRTLYLALT 436
            GTH LL   V + +LGLLV+DEEQRFGVK KE+I   K++VDVLTL+ATPIPRTL +++ 
Sbjct: 727  GTHRLLSKDVAFRDLGLLVIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSML 786

Query: 437  GFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEVMEF 496
            G RD S+I TPP  R PI+T +   +   +  AI+ E++RGGQVFY+  R++ +E  +  
Sbjct: 787  GVRDLSVIETPPTNRYPIQTFVMEQNPGVIREAIEREMERGGQVFYLHNRVEDMERTVSQ 846

Query: 497  LEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNANTIIVQDV 556
            LEE  PD  +   HG+    QLE+ +  F  G   +L++T I+E+G+D+ NANT+I+++ 
Sbjct: 847  LEELVPDASVGYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENA 906

Query: 557  QQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQGFQLAER 616
              +GL+QLYQLRGR+GR+ + AYAY +Y    +L++ A +RL A++   ELG GF++A R
Sbjct: 907  DHYGLSQLYQLRGRIGRSSRVAYAYFMYQPMKVLNEVAEKRLQAIKNFTELGSGFKIAMR 966

Query: 617  DMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQVDININPH 676
            D+ IRG G + G+QQ G + +VG DL+ +ML E+++K     + +      ++D+ +  +
Sbjct: 967  DLSIRGAGNLLGKQQHGFIDSVGYDLYTQMLQEAVNK--RRGIKSAEKTDAEIDLGLEAY 1024

Query: 677  LPSEYINHLENPMEIINEAERVAEKDT-WSLMQFTENLRRQYGKEPRPMEVLLKKLYLRR 735
            LP++Y+      +E+    +R+ E D+  +  + +E+L  ++G  P+P+  LL   +L+R
Sbjct: 1025 LPTDYVADSRQKIELY---KRIREADSDEAETEISEDLIDRFGDYPQPVTNLLAIAHLKR 1081

Query: 736  MAADIGINRIYSSGK--TVFMKANITKK-----VFKMMT 767
             A    +N +  +G+  TV +    T K     +FK ++
Sbjct: 1082 FADLAWVNHVTKAGQKLTVVLSPQATAKAQGEPIFKALS 1120


>B5QT76_LACCA (tr|B5QT76) Transcriptional-repair coupling factor OS=Lactobacillus
            casei GN=mfd PE=4 SV=1
          Length = 1174

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 253/639 (39%), Positives = 398/639 (62%), Gaps = 23/639 (3%)

Query: 139  LRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADG-MAKLPVKQSSKMLYRYC 197
            L+ GDYVVH   GIG + G  M+  +      +Y+ I Y +     +PV Q + ++ +Y 
Sbjct: 495  LKPGDYVVHVNHGIGQYTG--METLEVDGVHRDYITIVYRNNDKLFIPVDQLN-LVQKYV 551

Query: 198  LPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY-PKSPAM 256
              + + K  +++KL     W+K K K    I+ +  +L++LY  R  ++   + P     
Sbjct: 552  --SADGKTPSVNKLGGAE-WQKTKRKVAARIEDIADELIDLYAKREAEKGFAFGPDDDLQ 608

Query: 257  AEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAIRCVVSAK 316
             +F A+FPY  TPDQ ++  +++ D+ E+  PMDRL+ GDVGFGKTEVALRA    +   
Sbjct: 609  HKFEAEFPYPETPDQLRSAKEIKHDM-EKPKPMDRLLVGDVGFGKTEVALRAAFKAIDYG 667

Query: 317  KQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKSGELDIIV 376
            KQA +L PT +LA+QHFD + ERFA +P IKVGLLSRFQT  + +E ++ +K+G +DI+V
Sbjct: 668  KQAAILVPTTILAQQHFDTMKERFADFP-IKVGLLSRFQTAHQNKETIKGLKNGTIDIVV 726

Query: 377  GTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPRTLYLALT 436
            GTH LL   V + +LGLLV+DEEQRFGVK KE+I   K++VDVLTL+ATPIPRTL +++ 
Sbjct: 727  GTHRLLSKDVAFRDLGLLVIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSML 786

Query: 437  GFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEVMEF 496
            G RD S+I TPP  R PI+T +   +   +  AI+ E++RGGQVFY+  R++ +E  +  
Sbjct: 787  GVRDLSVIETPPTNRYPIQTFVMEQNPGVIREAIEREMERGGQVFYLHNRVEDMERTVSQ 846

Query: 497  LEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNANTIIVQDV 556
            LEE  PD  +   HG+    QLE+ +  F  G   +L++T I+E+G+D+ NANT+I+++ 
Sbjct: 847  LEELVPDASVGYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENA 906

Query: 557  QQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQGFQLAER 616
              +GL+QLYQLRGR+GR+ + AYAY +Y    +L++ A +RL A++   ELG GF++A R
Sbjct: 907  DHYGLSQLYQLRGRIGRSSRVAYAYFMYQPMKVLNEVAEKRLQAIKNFTELGSGFKIAMR 966

Query: 617  DMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQVDININPH 676
            D+ IRG G + G+QQ G + +VG DL+ +ML E+++K     + +      ++D+ +  +
Sbjct: 967  DLSIRGAGNLLGKQQHGFIDSVGYDLYTQMLQEAVNK--RRGIKSAEKTDAEIDLGLEAY 1024

Query: 677  LPSEYINHLENPMEIINEAERVAEKDT-WSLMQFTENLRRQYGKEPRPMEVLLKKLYLRR 735
            LP++Y+      +E+    +R+ E D+  +  + +E+L  ++G  P+P+  LL   +L+R
Sbjct: 1025 LPTDYVADSRQKIELY---KRIREADSDEAETEISEDLIDRFGDYPQPVTNLLAIAHLKR 1081

Query: 736  MAADIGINRIYSSGK--TVFMKANITKK-----VFKMMT 767
             A    +N +  +G+  TV +    T K     +FK ++
Sbjct: 1082 FADLAWVNHVTKAGQKLTVVLSPQATAKAQGEPIFKALS 1120


>Q0B0S4_SYNWW (tr|Q0B0S4) Transcription-repair coupling factor-superfamily II
            helicase OS=Syntrophomonas wolfei subsp. wolfei (strain
            DSM 2245B / Goettingen) GN=Swol_0073 PE=4 SV=1
          Length = 1073

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 261/624 (41%), Positives = 390/624 (62%), Gaps = 29/624 (4%)

Query: 139  LRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKL--PVKQSSKMLYRY 196
            L+ GDYVVH+  GIG+F G+     +NS    EY+ +EYA G  +L  P+++   +L++Y
Sbjct: 422  LKLGDYVVHESYGIGIFRGVSQ--VENSGITREYILLEYA-GTDRLYLPLEKLD-LLFKY 477

Query: 197  CLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY---PKS 253
               + +K+P+ L+KL   S WE+ + K   +IQ +  DL++LY HR  + R  Y   P +
Sbjct: 478  T-SSGDKEPR-LNKLG-GSAWERTRKKVAQSIQDLAEDLLQLYAHR--ESREGYAFSPDT 532

Query: 254  PAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAIRCVV 313
            P  ++F  +FP+  TPDQ +A  +V+KD+  R  PMDRL+CGDVG+GKTEV LRA    +
Sbjct: 533  PWQSQFEDEFPFRETPDQLKAINEVKKDMETRR-PMDRLVCGDVGYGKTEVFLRAAFKAI 591

Query: 314  SAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKSGELD 373
               KQ  +L PT VLA+QHF   +ERFA YP + + +LSRF++ +E++  +E ++ G +D
Sbjct: 592  MDGKQVAILVPTTVLAEQHFQTFTERFAAYPAV-IEVLSRFRSNSEQKRIVEDLQKGVVD 650

Query: 374  IIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPRTLYL 433
            I++ TH LL   V + +LGLLV+DEE RFGV QKEKI   K  VDV++LSATPIPR+L++
Sbjct: 651  IVIATHRLLSRDVKFKDLGLLVIDEEHRFGVAQKEKIKALKELVDVISLSATPIPRSLHM 710

Query: 434  ALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEV 493
            ALTG RD S+I TPPPER PI T++  +++E ++ A+  E++R GQVF+V  RI+ +  V
Sbjct: 711  ALTGLRDLSVIETPPPERYPITTYVLEYNEEIIVEAVMKEIERQGQVFFVHNRIEDIYRV 770

Query: 494  MEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNANTIIV 553
             E L+E FP ++IA+GHG+    +L   M  F  G+ ++ + T I+ESGLD+ N NTIIV
Sbjct: 771  KEQLDELFPGIKIAVGHGRMKEDELSRVMMDFVNGKYQLFLCTTIIESGLDMPNVNTIIV 830

Query: 554  QDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQGFQL 613
             +  + GLAQLYQLRGRVGR+ + AYAYL Y    ++S+ + +RL+A+ E  ELG G ++
Sbjct: 831  DEADKMGLAQLYQLRGRVGRSHRLAYAYLTYRPDWVISEASQKRLNAIREFNELGSGMKI 890

Query: 614  AERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSK-----VEEHRVVAVPYHSVQ 668
            A RD+ IRG G I G +Q G +  VG DL+  +L +   +     V+E+RV        Q
Sbjct: 891  ALRDLEIRGAGNILGAEQHGYIQAVGFDLYCRLLEQETGRLKGEQVQENRV------DPQ 944

Query: 669  VDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLL 728
            +DI+I+ ++P  YI    + M I         ++    ++     R  +G  P+ +E  L
Sbjct: 945  LDIDIDYYIPESYIPDSGSKMRIYRRLLLAGSQEEVEEIREEIRDR--FGPLPQAVENFL 1002

Query: 729  KKLYLRRMAADIGINRIYSSGKTV 752
            +   LR +A D  I  +   G+ +
Sbjct: 1003 QIAALRLLARDKEIKSLRRKGRQI 1026


>E5YPY3_9BACL (tr|E5YPY3) Transcription-repair coupling factor OS=Paenibacillus
            vortex V453 GN=PVOR_02341 PE=4 SV=1
          Length = 1175

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 260/657 (39%), Positives = 403/657 (61%), Gaps = 19/657 (2%)

Query: 107  LVKEQQQRGLQKLKGERVGKDGNFSYKVDPYT-LRNGDYVVHKKVGIGMFIGIKMDVPKN 165
            ++ E +    ++ K  +  K+ + + ++  YT L+ GDYVVH+  GIG ++GI     + 
Sbjct: 456  IITESEMFSSKQRKTRKSTKNMDNAERIKSYTELKVGDYVVHQNHGIGKYMGIG--TLEI 513

Query: 166  SAEPTEYVFIEYADGMAKLPVKQSSKMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGK 225
            +    +Y+ I YA G  KL V      L +  + +E+K+PK + KL     W + K K +
Sbjct: 514  NGIHKDYMHILYAGG-DKLSVPIEQIDLIQKYVGSEDKEPK-VYKLGGNE-WTRVKNKVR 570

Query: 226  VAIQKMVVDLMELYLHRLKQRRPPY---PKSPAMAEFTAQFPYEPTPDQKQAFIDVEKDL 282
             ++Q +  DL++LY  R  Q  P Y     +    EF   FPY+ TPDQ +A  +++KD+
Sbjct: 571  SSVQDIADDLIKLYAER--QSAPGYGFEKDTSEQQEFEDMFPYDETPDQLRAITEIKKDM 628

Query: 283  TERETPMDRLICGDVGFGKTEVALRAIRCVVSAKKQAMVLAPTIVLAKQHFDVISERFAV 342
             E+  PMDRL+CGDVG+GKTEVA+RA        KQ  VL PT +LA+QH++   ERFA 
Sbjct: 629  -EQNRPMDRLLCGDVGYGKTEVAVRAAFKSAIEGKQVAVLVPTTILAQQHYETFRERFAN 687

Query: 343  YPDIKVGLLSRFQTKAEKEEHLESIKSGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRF 402
            YP I + +LSRF+++ E+ E ++ +K G +DI++GTH LL   +V+ +LGLL+VDEEQRF
Sbjct: 688  YP-INIQVLSRFRSRKEQNETIKKVKQGSVDILIGTHRLLSQDIVFKDLGLLIVDEEQRF 746

Query: 403  GVKQKEKIATFKTSVDVLTLSATPIPRTLYLALTGFRDASLITTPPPERVPIKTHLSSFS 462
            GV  KEK+   KT+VDVLTL+ATPIPRTL++++ G RD S+I TPP  R P++T++   S
Sbjct: 747  GVTHKEKLKKLKTNVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEHS 806

Query: 463  KEKVISAIKYELDRGGQVFYVLPRIKGLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTM 522
            +  V  AI+ EL RGGQV+Y+  R++G++E+   +    P+  + +GHG+    +LE T+
Sbjct: 807  QTLVREAIERELARGGQVYYLYNRVQGIQEMAAQISMLVPEARVGVGHGQMSETELEKTI 866

Query: 523  EKFALGEIKILISTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYL 582
              F  GE  +L+ST+I+E+G+DI N NT+IV D  + GL+QLYQLRGRVGR+++ AYAY 
Sbjct: 867  LDFLDGEYDVLVSTSIIETGVDIPNVNTLIVHDADKMGLSQLYQLRGRVGRSNRIAYAYF 926

Query: 583  LYPDKNLLSDQALERLSALEECRELGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDL 642
             Y    +L++ A +RL +++E  ELG GF++A RD+ IRG G + G +Q G + +VG DL
Sbjct: 927  TYQRDKVLTEVAEKRLQSIKEFTELGSGFKIAMRDLSIRGAGNLLGAEQHGFIASVGFDL 986

Query: 643  FFEMLFESLSKVEEHRVV--AVPYH--SVQVDININPHLPSEYINHLENPMEIINEAERV 698
            + +ML E + K +   +   A+P    +  +D+ I+ +LPS+YI      +EI  +   V
Sbjct: 987  YSQMLAEEIQKRKVSMLGEPALPTKDWNTSIDLGIDAYLPSDYIYDSIQKIEIYKKVAVV 1046

Query: 699  AEKDTWSLMQFTENLRRQYGKEPRPMEVLLKKLYLRRMAADIGINRIYSSGKTVFMK 755
            +  D  +  +  + L  ++G+ P  +  LL    L+      GI+ I   G  V ++
Sbjct: 1047 SSIDESA--ELEDELLDRFGELPLAVSNLLAVSRLKVYGHTYGIDSIIQRGDDVLLQ 1101


>C2F9S2_LACPA (tr|C2F9S2) Transcription-repair coupling factor (TRCF)
            OS=Lactobacillus paracasei subsp. paracasei ATCC 25302
            GN=mfd PE=4 SV=1
          Length = 1174

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 253/639 (39%), Positives = 399/639 (62%), Gaps = 23/639 (3%)

Query: 139  LRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADG-MAKLPVKQSSKMLYRYC 197
            L+ GDYVVH   GIG + G  M+  +      +Y+ I Y +     +PV Q + ++ +Y 
Sbjct: 495  LKPGDYVVHVNHGIGQYTG--METLEVDGVHRDYITIVYRNNDKLFIPVDQLN-LVQKYV 551

Query: 198  LPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY-PKSPAM 256
              + + K  +++KL     W+K K K    I+ +  +L++LY  R  ++   + P     
Sbjct: 552  --SADGKTPSVNKLGGAE-WQKTKRKVAARIEDIADELIDLYAKREAEKGFAFGPDDDLQ 608

Query: 257  AEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAIRCVVSAK 316
             +F A+FPY  TPDQ ++  +++ D+ E+  PMDRL+ GDVGFGKTEVALRA    +   
Sbjct: 609  HKFEAEFPYPETPDQLRSAKEIKHDM-EKPKPMDRLLVGDVGFGKTEVALRAAFKAIDYG 667

Query: 317  KQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKSGELDIIV 376
            KQA +L PT +LA+QHFD + ERFA +P IKVGLLSRFQT  + +E ++ +K+G +DI+V
Sbjct: 668  KQAAILVPTTILAQQHFDTMKERFADFP-IKVGLLSRFQTPHQNKETIKGLKNGTIDIVV 726

Query: 377  GTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPRTLYLALT 436
            GTH LL   V + +LGLLV+DEEQRFGVK KE+I   K++VDVLTL+ATPIPRTL +++ 
Sbjct: 727  GTHRLLSKDVAFRDLGLLVIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSML 786

Query: 437  GFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEVMEF 496
            G RD S+I TPP  R PI+T +   +   +  AI+ E++RGGQVFY+  R++ +E  +  
Sbjct: 787  GVRDLSVIETPPTNRYPIQTFVMEQNPGVIREAIEREMERGGQVFYLHNRVEDMERTVSQ 846

Query: 497  LEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNANTIIVQDV 556
            LEE  PD  +   HG+    QLE+ +  F  G   +L++T I+E+G+D+ NANT+I+++ 
Sbjct: 847  LEELVPDASVGYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENA 906

Query: 557  QQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQGFQLAER 616
              +GL+QLYQLRGR+GR+ + AYAY +Y    +L++ A +RL A+++  ELG GF++A R
Sbjct: 907  DHYGLSQLYQLRGRIGRSSRVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSGFKIAMR 966

Query: 617  DMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQVDININPH 676
            D+ IRG G + G+QQ G + +VG DL+ +ML E+++K     + +      ++D+ +  +
Sbjct: 967  DLSIRGAGNLLGKQQHGFIDSVGYDLYTQMLQEAVNK--RRGIKSAEKTDAEIDLGLEAY 1024

Query: 677  LPSEYINHLENPMEIINEAERVAEKDT-WSLMQFTENLRRQYGKEPRPMEVLLKKLYLRR 735
            LP++Y+      +E+    +R+ E D+  +  + +E+L  ++G  P+P+  LL   +L+R
Sbjct: 1025 LPTDYVADSRQKIELY---KRIREADSDEAETEISEDLIDRFGDYPQPVTNLLAIAHLKR 1081

Query: 736  MAADIGINRIYSSGK--TVFMKANITKK-----VFKMMT 767
             A    +N +  +G+  TV +    T K     +FK ++
Sbjct: 1082 FADLAWVNHVTKAGQKLTVVLSPQATAKAQGEPIFKALS 1120


>D8GCN9_LACCZ (tr|D8GCN9) Transcription-repair coupling factor (Superfamily II
            helicase) OS=Lactobacillus casei (strain Zhang)
            GN=LCAZH_2510 PE=4 SV=1
          Length = 1174

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 253/639 (39%), Positives = 399/639 (62%), Gaps = 23/639 (3%)

Query: 139  LRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADG-MAKLPVKQSSKMLYRYC 197
            L+ GDYVVH   GIG + G  M+  +      +Y+ I Y +     +PV Q + ++ +Y 
Sbjct: 495  LKPGDYVVHVNHGIGQYTG--METLEVDGVHRDYITIVYRNNDKLFIPVDQLN-LVQKYV 551

Query: 198  LPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY-PKSPAM 256
              + + K  +++KL     W+K K K    I+ +  +L++LY  R  ++   + P     
Sbjct: 552  --SADGKTPSVNKLGGAE-WQKTKRKVAARIEDIADELIDLYAKREAEKGFAFGPDDDLQ 608

Query: 257  AEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAIRCVVSAK 316
             +F A+FPY  TPDQ ++  +++ D+ E+  PMDRL+ GDVGFGKTEVALRA    +   
Sbjct: 609  HKFEAEFPYPETPDQLRSAKEIKHDM-EKPKPMDRLLVGDVGFGKTEVALRAAFKAIDYG 667

Query: 317  KQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKSGELDIIV 376
            KQA +L PT +LA+QHFD + ERFA +P IKVGLLSRFQT  + +E ++ +K+G +DI+V
Sbjct: 668  KQAAILVPTTILAQQHFDTMKERFADFP-IKVGLLSRFQTAHQNKETIKGLKNGTIDIVV 726

Query: 377  GTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPRTLYLALT 436
            GTH LL   V + +LGLLV+DEEQRFGVK KE+I   K++VDVLTL+ATPIPRTL +++ 
Sbjct: 727  GTHRLLSKDVAFRDLGLLVIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSML 786

Query: 437  GFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEVMEF 496
            G RD S+I TPP  R PI+T +   +   +  AI+ E++RGGQVFY+  R++ +E  +  
Sbjct: 787  GVRDLSVIETPPTNRYPIQTFVMEQNPGVIREAIEREMERGGQVFYLHNRVEDMERTVSQ 846

Query: 497  LEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNANTIIVQDV 556
            LEE  PD  +   HG+    QLE+ +  F  G   +L++T I+E+G+D+ NANT+I+++ 
Sbjct: 847  LEELVPDASVGYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENA 906

Query: 557  QQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQGFQLAER 616
              +GL+QLYQLRGR+GR+ + AYAY +Y    +L++ A +RL A+++  ELG GF++A R
Sbjct: 907  DHYGLSQLYQLRGRIGRSSRVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSGFKIAMR 966

Query: 617  DMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQVDININPH 676
            D+ IRG G + G+QQ G + +VG DL+ +ML E+++K     + +      ++D+ +  +
Sbjct: 967  DLSIRGAGNLLGKQQHGFIDSVGYDLYTQMLQEAVNK--RRGIKSAEKTDAEIDLGLEAY 1024

Query: 677  LPSEYINHLENPMEIINEAERVAEKDT-WSLMQFTENLRRQYGKEPRPMEVLLKKLYLRR 735
            LP++Y+      +E+    +R+ E D+  +  + +E+L  ++G  P+P+  LL   +L+R
Sbjct: 1025 LPTDYVADSRQKIELY---KRIREADSDEAETEISEDLIDRFGDYPQPVTNLLAIAHLKR 1081

Query: 736  MAADIGINRIYSSGK--TVFMKANITKK-----VFKMMT 767
             A    +N +  +G+  TV +    T K     +FK ++
Sbjct: 1082 FADLAWVNHVTKAGQKLTVVLSPQATAKAQGEPIFKALS 1120


>C4WBZ1_STAWA (tr|C4WBZ1) Transcription-repair coupling factor OS=Staphylococcus
            warneri L37603 GN=mfd PE=4 SV=1
          Length = 1169

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 254/622 (40%), Positives = 395/622 (63%), Gaps = 24/622 (3%)

Query: 139  LRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKL--PVKQSSKMLYRY 196
            L  GDYVVH   G+G ++G+  +  +   +  +Y+ ++Y  G  +L  PV Q  ++  + 
Sbjct: 496  LNVGDYVVHVHHGVGRYLGV--ETLEVGEQHRDYIKLQYK-GTDQLFVPVDQMDQV--QK 550

Query: 197  CLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY-PKSPA 255
             + +E+K P+ L+KL  T  W+K K K + +++ +  +L++LY  R       + P +  
Sbjct: 551  YVASEDKSPR-LNKLGGTE-WKKTKAKVQQSVEDIADELIDLYKQREMSVGYQFGPDTEE 608

Query: 256  MAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAIRCVVSA 315
             + F   FPYE TPDQ ++  +++ D+ ERE PMDRL+CGDVG+GKTEVA+RA    V  
Sbjct: 609  QSTFELDFPYELTPDQSKSIEEIKGDM-ERERPMDRLLCGDVGYGKTEVAVRAAFKAVME 667

Query: 316  KKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKSGELDII 375
             KQ   L PT +LA+QH++ + ER   +P +++ L+SRF++  E +E  E +KSG +DI+
Sbjct: 668  GKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLISRFRSTKEVKETKEGLKSGYVDIV 726

Query: 376  VGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPRTLYLAL 435
            VGTH LLG  + Y +LGLL+VDEEQRFGV+ KE+I T K +VDVLTL+ATPIPRTL++++
Sbjct: 727  VGTHKLLGKDIHYKDLGLLIVDEEQRFGVRHKERIKTLKNNVDVLTLTATPIPRTLHMSM 786

Query: 436  TGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEVME 495
             G RD S+I TPP  R P++T++   +   +  A++ EL R GQVFY+  +++ + E  E
Sbjct: 787  LGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLYNKVQSIYEKRE 846

Query: 496  FLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNANTIIVQD 555
             L+   PD  IA+ HG+   + LE+TM  F   E  IL++T I+E+G+D+ NANT+I+++
Sbjct: 847  QLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLIIEE 906

Query: 556  VQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQGFQLAE 615
              +FGL+QLYQLRGRVGR+ +  YAY L+P   +L++ A ERL A++E  ELG GF++A 
Sbjct: 907  ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEFTELGSGFKIAM 966

Query: 616  RDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVA-----VPYHSVQVD 670
            RD+ IRG G + G+QQ G + +VG DL+ +ML E+   V E R +      VP   V+V+
Sbjct: 967  RDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEA---VNEKRGIKEETPDVP--DVEVE 1021

Query: 671  ININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLLKK 730
            +N++ +LP+EYI + +  +EI  +  +V  ++   LM   + L  ++   P  +E LL  
Sbjct: 1022 LNLDAYLPAEYIQNEQAKIEIYKKLRKVESEE--QLMDIKDELIDRFNDYPTEVERLLDI 1079

Query: 731  LYLRRMAADIGINRIYSSGKTV 752
            + ++  A   GI +I   GK +
Sbjct: 1080 VEIKTHALHAGITKIKDMGKQI 1101


>R7MFE0_9CLOT (tr|R7MFE0) Transcription-repair coupling factor OS=Clostridium sp.
           CAG:813 GN=BN790_01020 PE=4 SV=1
          Length = 968

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 259/631 (41%), Positives = 395/631 (62%), Gaps = 24/631 (3%)

Query: 132 YKVDPYTLRN------GDYVVHKKVGIGMFIGI-KMDVPKNSAEPTEYVFIEYAD-GMAK 183
           YK  P  + N      G+YVVH   G+G++ G+ K ++     +  +Y+ IEYA+     
Sbjct: 280 YKEKPEYIENINDIKVGEYVVHTIHGLGIYKGLSKQEI---DGQLKDYLTIEYANKDRLH 336

Query: 184 LPVKQSSKMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRL 243
           +P +Q + +L RY   +   KPK LS++     WE  K K K A++ +  DL+ LY  R 
Sbjct: 337 IPAEQIN-LLCRY-RGSGTVKPK-LSRMGGKD-WESTKAKVKKAVEVVAYDLLRLYARRK 392

Query: 244 KQRRPPY-PKSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKT 302
            Q+   + P +    E    F Y  TPDQ +A   V+KD+ E   PMDRLICGDVGFGKT
Sbjct: 393 MQQGIQFLPDTNWQVEMEEAFEYVETPDQLKAIDQVKKDM-ESSQPMDRLICGDVGFGKT 451

Query: 303 EVALRAIRCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEE 362
           EVA+RAI   V++ KQ  V+ PT +LA QH+  ISERF  +  I V LLSRF+T+ E++E
Sbjct: 452 EVAMRAIFKAVTSGKQVAVVVPTTILALQHYQTISERFKPFG-IGVELLSRFRTQKEQKE 510

Query: 363 HLESIKSGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTL 422
            ++++ +G+ D++VGTH LL   +V+ +LGLLV+DEE RFGV+ KEK+   + ++D+L++
Sbjct: 511 TIKNLATGKCDVVVGTHRLLQEGIVFKDLGLLVIDEEHRFGVRHKEKLKQLRENIDILSM 570

Query: 423 SATPIPRTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFY 482
           SATPIPRTLY++L+G +D S+I TPP  R+PIKT++  +++  V +AI +E+DR GQVFY
Sbjct: 571 SATPIPRTLYMSLSGIKDMSVINTPPKNRLPIKTYVGEWNENMVKNAINHEIDREGQVFY 630

Query: 483 VLPRIKGLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESG 542
           +  R++ ++E    L++  P+  IAIGHG+   K LE+ +  FA  E  +L++T I+E+G
Sbjct: 631 LYNRVETIQEFKNQLQKIVPNARIAIGHGQMDEKALEEVIVDFANHEYDVLLATTIIENG 690

Query: 543 LDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALE 602
           +DI NANT+I+ D  +FGLAQLYQLRGRVGR+ ++AY Y  Y     ++  A+ RL A++
Sbjct: 691 IDIPNANTMIIHDADRFGLAQLYQLRGRVGRSQRQAYCYCFYKKSKEITKDAVHRLKAIK 750

Query: 603 ECRELGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAV 662
           E   LG G+Q+A RD+ IRG G I G +Q G + NVG D + E+L E++ +++  +V   
Sbjct: 751 EFTTLGSGYQIALRDVEIRGVGNILGTKQHGHMINVGFDTYCELLDEAVQEIQGEKVEKT 810

Query: 663 PYHSVQVDININPHLPSEYINHLENPMEIINEAERVAE-KDTWSLMQFTENLRRQYGKEP 721
                 VDIN+  ++P E++   E  M    E +R+A+ K +  L    E  + ++ K P
Sbjct: 811 T--PAIVDINVTAYIPDEWVGSSEQKM---IEYKRLADVKSSTELDYIVEEWQDRFAKPP 865

Query: 722 RPMEVLLKKLYLRRMAADIGINRIYSSGKTV 752
             +E L+K + LR  A ++ I+ I  +  ++
Sbjct: 866 ECVENLIKLIRLRLSATEVKISVIRETQDSI 896


>F4LMN0_TREBD (tr|F4LMN0) Transcription-repair coupling factor OS=Treponema
            brennaborense (strain DSM 12168 / CIP 105900 / DD5/3)
            GN=Trebr_1353 PE=4 SV=1
          Length = 1185

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 248/616 (40%), Positives = 386/616 (62%), Gaps = 14/616 (2%)

Query: 139  LRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADG-MAKLPVKQSSKMLYRYC 197
            L  GDYVVH   GIG+F GI+    K      +Y+ +EY D  +  +P++Q + ++ RY 
Sbjct: 521  LNPGDYVVHVNYGIGLFKGIER--VKAMGNERDYIKLEYDDEEIVFIPIEQVN-LVQRY- 576

Query: 198  LPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPYPK-SPAM 256
            + NE   P+ L +L   S WE RK K K +++ +   L++LY  R   R  P+PK +   
Sbjct: 577  IGNEGCAPR-LDRLGSKS-WENRKNKVKKSVEDIAQKLIDLYSRRKAARGFPFPKDTEWQ 634

Query: 257  AEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAIRCVVSAK 316
              F A FPY+ T DQ     +V+ D+ E+  PMDRLICGDVG+GKTEVA+RA    V   
Sbjct: 635  TAFEAAFPYDETDDQLTVTAEVKADM-EKPVPMDRLICGDVGYGKTEVAMRAAFKAVMGG 693

Query: 317  KQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKSGELDIIV 376
            KQ   LAPT +LA+QH++  +ERF  +P +++  +SRF +KAE++  LE +K+G +DI+V
Sbjct: 694  KQVAFLAPTTILAEQHYETCTERFENFP-VRIAHMSRFVSKAEQKNILEKLKTGGVDILV 752

Query: 377  GTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPRTLYLALT 436
            GTH ++   V++  LGL+++DEEQRFGVK KE++   KT++D L +SATPIPRTL+++L 
Sbjct: 753  GTHRIIQKDVIFKELGLMIIDEEQRFGVKDKERLKELKTNIDSLAMSATPIPRTLHMSLL 812

Query: 437  GFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEVMEF 496
              RD SL+TTPP  R PI+T + S++ ++V +AI+ E +RGGQVFY+  R++ LEE    
Sbjct: 813  KIRDMSLLTTPPQNRQPIETVIDSYNDDRVATAIRREAERGGQVFYLHNRVETLEETRIK 872

Query: 497  LEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNANTIIVQDV 556
            LE+  P++ +   HG+  + +L+D   +F +G   +L++T I+E+G+DI N NTII+   
Sbjct: 873  LEQLVPEMLVDTAHGQMSAGELDDIFRRFKMGGFHVLVATTIIENGIDIPNVNTIIIDRA 932

Query: 557  QQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQGFQLAER 616
              +G++QLYQLRGRVGR+D++AYAYLLYP+   LS+ A++RL  + +  ELG GF++A +
Sbjct: 933  DMYGVSQLYQLRGRVGRSDRKAYAYLLYPENKALSEIAMKRLQVISDFTELGSGFKIAMK 992

Query: 617  DMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQVDININPH 676
            DM IRG G + G+ Q+G++ +VG DL+  +L E++ ++      A   + V +++     
Sbjct: 993  DMEIRGAGNLLGKDQSGEMYSVGFDLYLRLLEEAVQRLTNDHYEA--ENEVLLELEYTGF 1050

Query: 677  LPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLLKKLYLRRM 736
            +P  YI + +  MEI  +   +A +D   L +    L+ ++G  P  +  LL    +R +
Sbjct: 1051 IPDSYITNPQTKMEIYKKISGIANRD--ELERMYGELQDRFGPIPDEVSSLLSLAEIRII 1108

Query: 737  AADIGINRIYSSGKTV 752
               + I  +   G  V
Sbjct: 1109 CKKLHIATLRERGGKV 1124


>D3E756_GEOS4 (tr|D3E756) Transcription-repair coupling factor OS=Geobacillus sp.
            (strain Y412MC10) GN=GYMC10_0039 PE=4 SV=1
          Length = 1175

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 258/658 (39%), Positives = 404/658 (61%), Gaps = 21/658 (3%)

Query: 107  LVKEQQQRGLQKLKGERVGKDGNFSYKVDPYT-LRNGDYVVHKKVGIGMFIGIKMDVPKN 165
            ++ E +    ++ K  +  K+ + + ++  YT L+ GDYVVH+  GIG ++GI     + 
Sbjct: 456  IITESEMFSSKQRKTRKTTKNMDNAERIKSYTELKVGDYVVHQNHGIGKYMGIG--TLEI 513

Query: 166  SAEPTEYVFIEYADGMAKLPVKQSSKMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGK 225
            +    +Y+ I YA G  KL V      L +  + +E+K+PK + KL     W + K K +
Sbjct: 514  NGIHKDYMHILYAGG-DKLSVPIEQIDLIQKYVGSEDKEPK-VYKLGGNE-WTRVKNKVR 570

Query: 226  VAIQKMVVDLMELYLHRLKQRRPPY---PKSPAMAEFTAQFPYEPTPDQKQAFIDVEKDL 282
             ++Q +  DL++LY  R  Q  P Y     +    EF   FPY+ TPDQ +A  +++KD+
Sbjct: 571  SSVQDIADDLIKLYAER--QSAPGYGFEKDTSEQQEFEDMFPYDETPDQLRAITEIKKDM 628

Query: 283  TERETPMDRLICGDVGFGKTEVALRAIRCVVSAKKQAMVLAPTIVLAKQHFDVISERFAV 342
             E+  PMDRL+CGDVG+GKTEVA+RA        KQ  VL PT +LA+QH++   ERFA 
Sbjct: 629  -EQNRPMDRLLCGDVGYGKTEVAVRAAFKAAIEGKQVAVLVPTTILAQQHYETFRERFAN 687

Query: 343  YPDIKVGLLSRFQTKAEKEEHLESIKSGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRF 402
            YP I + +LSRF+++ E+ E ++ +K G +DI++GTH LL   +V+ +LGLL+VDEEQRF
Sbjct: 688  YP-INIQVLSRFRSRKEQNETIKKVKQGSVDILIGTHRLLSQDIVFKDLGLLIVDEEQRF 746

Query: 403  GVKQKEKIATFKTSVDVLTLSATPIPRTLYLALTGFRDASLITTPPPERVPIKTHLSSFS 462
            GV  KEK+   KT++DVLTL+ATPIPRTL++++ G RD S+I TPP  R P++T++   S
Sbjct: 747  GVTHKEKLKKLKTNIDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEHS 806

Query: 463  KEKVISAIKYELDRGGQVFYVLPRIKGLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTM 522
            +  V  AI+ EL RGGQV+Y+  R++G++E+   +    P+  + +GHG+    +LE T+
Sbjct: 807  QTLVREAIERELARGGQVYYLYNRVQGIQEMAAQISMLVPEARVGVGHGQMSETELEKTI 866

Query: 523  EKFALGEIKILISTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYL 582
              F  GE  +L+ST+I+E+G+DI N NT+IV D  + GL+QLYQLRGRVGR+++ AYAY 
Sbjct: 867  LDFLDGEYDVLVSTSIIETGVDIPNVNTLIVHDADKMGLSQLYQLRGRVGRSNRIAYAYF 926

Query: 583  LYPDKNLLSDQALERLSALEECRELGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDL 642
             Y    +L++ A +RL +++E  ELG GF++A RD+ IRG G + G +Q G + +VG DL
Sbjct: 927  TYQRDKVLTEVAEKRLQSIKEFTELGSGFKIAMRDLSIRGAGNLLGAEQHGFIASVGFDL 986

Query: 643  FFEMLFESLSK-----VEEHRVVAVPYHSVQVDININPHLPSEYINHLENPMEIINEAER 697
            + +ML E + K     + E  + +  +++  +D+ I+ +LPS+YI      +EI  +   
Sbjct: 987  YSQMLAEEIQKRKVSMLGEPSLPSKDWNT-SIDLGIDAYLPSDYIYDSIQKIEIYKKVAV 1045

Query: 698  VAEKDTWSLMQFTENLRRQYGKEPRPMEVLLKKLYLRRMAADIGINRIYSSGKTVFMK 755
            V+  D  +  +  + L  ++G+ P  +  LL    L+      GI+ I   G  V ++
Sbjct: 1046 VSSIDESA--ELEDELLDRFGELPLAVSNLLAVSRLKVYGRTYGIDSITQRGDDVLLQ 1101