Miyakogusa Predicted Gene
- Lj1g3v3597220.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v3597220.1 Non Chatacterized Hit- tr|C0HE90|C0HE90_MAIZE
Uncharacterized protein OS=Zea mays PE=2
SV=1,49,6e-16,seg,NULL,CUFF.30958.1
(120 letters)
Database: trembl
41,451,118 sequences; 13,208,986,710 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
C0HE90_MAIZE (tr|C0HE90) Uncharacterized protein OS=Zea mays PE=... 88 1e-15
C0PB94_MAIZE (tr|C0PB94) Uncharacterized protein OS=Zea mays PE=... 82 5e-14
>C0HE90_MAIZE (tr|C0HE90) Uncharacterized protein OS=Zea mays PE=2 SV=1
Length = 198
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 66/100 (66%)
Query: 3 EEELATEPGVLVEDPSTGISGEDVFLVVGSWGKLLEPFLGDVDLAVSGASVDLFEAVGVR 62
E++LA + VLVE G + E V L+VG W +L+EP L DVDLA+ GA VD+ EAVG R
Sbjct: 53 EDDLAAQARVLVELAVPGRAREHVPLLVGRWRQLVEPLLRDVDLALGGARVDILEAVGGR 112
Query: 63 VDEALVDEGFEDGVAGETNHVVLLAFEVDGGEAHDAVGDL 102
+DE V E E+ + GE + + E+DG +AHDA+GDL
Sbjct: 113 LDELRVGERAEECLPGEADDLAARPLEIDGEDAHDAIGDL 152
>C0PB94_MAIZE (tr|C0PB94) Uncharacterized protein OS=Zea mays PE=2 SV=1
Length = 191
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 45/100 (45%), Positives = 64/100 (64%)
Query: 3 EEELATEPGVLVEDPSTGISGEDVFLVVGSWGKLLEPFLGDVDLAVSGASVDLFEAVGVR 62
E++LA + VLVE G + E V L+VG W +L++P L DVDLA+ GA VD+ EAVG R
Sbjct: 52 EDDLAAQARVLVELAVPGRAREHVSLLVGRWWQLVKPLLRDVDLALGGARVDILEAVGGR 111
Query: 63 VDEALVDEGFEDGVAGETNHVVLLAFEVDGGEAHDAVGDL 102
+DE V + ++ + E +H+ +DG +AHDAV DL
Sbjct: 112 LDEPRVGQSAKECLPREADHIAARPVGIDGEDAHDAVSDL 151