Miyakogusa Predicted Gene

Lj1g3v2627360.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2627360.1 tr|A2Q3N2|A2Q3N2_MEDTR Zinc finger, CCHC-type
OS=Medicago truncatula GN=MTR_7g076420 PE=4
SV=1,33.09,0.0000002,ZF_CCHC,Zinc finger, CCHC-type,CUFF.29334.1
         (125 letters)

Database: trembl 
           41,451,118 sequences; 13,208,986,710 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A2Q3N2_MEDTR (tr|A2Q3N2) Zinc finger, CCHC-type OS=Medicago trun...    64   2e-08

>A2Q3N2_MEDTR (tr|A2Q3N2) Zinc finger, CCHC-type OS=Medicago truncatula
           GN=MTR_7g076420 PE=4 SV=1
          Length = 140

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/139 (34%), Positives = 58/139 (41%), Gaps = 28/139 (20%)

Query: 8   QPELKLPPEWFHDPLAKCYSNLDTLDTFCYSEELFCFVDSPPPNPLLLKNVDDTNTVKVD 67
           Q  L LPP W  DP  KC+ NLDT   F YS +   FVD+ P       N +    +K +
Sbjct: 9   QDYLTLPPNWKDDPETKCFINLDTGRIFRYSGDFVDFVDAYP-------NQNAETKIKFE 61

Query: 68  NSPETEEPSDAVAKETPALETAPALEKAE--------------------VPVSKER-RKT 106
             P T + S   A     L+    LE A                     VP    R RK 
Sbjct: 62  EKPSTTKDSSEEATVAMELKDKIKLELASCANVEDSSISLEVTTLTMETVPEKDGRSRKN 121

Query: 107 RCGFCGEEGHNRRSCSLET 125
           RCG CG  GHNR++CS  T
Sbjct: 122 RCGACGVRGHNRQTCSKTT 140