Miyakogusa Predicted Gene
- Lj1g3v2251580.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v2251580.1 Non Chatacterized Hit- tr|I1JSZ4|I1JSZ4_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.1351 PE=,76.24,0,S4
RNA-binding domain,RNA-binding S4 domain; no description,RNA-binding
S4 domain; S4,RNA-binding S4,CUFF.28745.1
(294 letters)
Database: trembl
41,451,118 sequences; 13,208,986,710 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
I1JSZ4_SOYBN (tr|I1JSZ4) Uncharacterized protein OS=Glycine max ... 427 e-117
I3SSL5_LOTJA (tr|I3SSL5) Uncharacterized protein OS=Lotus japoni... 401 e-109
G7J5V2_MEDTR (tr|G7J5V2) RNA pseudourine synthase OS=Medicago tr... 400 e-109
B9GQ77_POPTR (tr|B9GQ77) Predicted protein OS=Populus trichocarp... 329 7e-88
E0CQW6_VITVI (tr|E0CQW6) Putative uncharacterized protein OS=Vit... 322 9e-86
K4BVS1_SOLLC (tr|K4BVS1) Uncharacterized protein OS=Solanum lyco... 318 1e-84
M1ALN6_SOLTU (tr|M1ALN6) Uncharacterized protein OS=Solanum tube... 314 2e-83
K7KSL2_SOYBN (tr|K7KSL2) Uncharacterized protein (Fragment) OS=G... 311 2e-82
R0IAL9_9BRAS (tr|R0IAL9) Uncharacterized protein OS=Capsella rub... 309 1e-81
B9S051_RICCO (tr|B9S051) Ribosomal pseudouridine synthase, putat... 308 1e-81
M4DH18_BRARP (tr|M4DH18) Uncharacterized protein OS=Brassica rap... 299 1e-78
A5AHP5_VITVI (tr|A5AHP5) Putative uncharacterized protein OS=Vit... 292 1e-76
J3MHP7_ORYBR (tr|J3MHP7) Uncharacterized protein OS=Oryza brachy... 287 3e-75
D7KT91_ARALL (tr|D7KT91) T4O12.25 OS=Arabidopsis lyrata subsp. l... 286 6e-75
C5Z1X0_SORBI (tr|C5Z1X0) Putative uncharacterized protein Sb10g0... 283 4e-74
K7ULI5_MAIZE (tr|K7ULI5) Uncharacterized protein OS=Zea mays GN=... 281 2e-73
K7VCT5_MAIZE (tr|K7VCT5) Uncharacterized protein OS=Zea mays GN=... 281 3e-73
B4FNR9_MAIZE (tr|B4FNR9) RNA binding protein OS=Zea mays GN=ZEAM... 281 3e-73
B6TXP4_MAIZE (tr|B6TXP4) RNA binding protein OS=Zea mays PE=2 SV=1 280 4e-73
I1GVB4_BRADI (tr|I1GVB4) Uncharacterized protein OS=Brachypodium... 279 9e-73
B8B2J0_ORYSI (tr|B8B2J0) Putative uncharacterized protein OS=Ory... 278 2e-72
I1Q5B6_ORYGL (tr|I1Q5B6) Uncharacterized protein OS=Oryza glaber... 278 2e-72
M0RQ50_MUSAM (tr|M0RQ50) Uncharacterized protein OS=Musa acumina... 272 8e-71
K3Y0V8_SETIT (tr|K3Y0V8) Uncharacterized protein OS=Setaria ital... 271 2e-70
Q8SB33_ORYSA (tr|Q8SB33) Putative ribosomal large subunit pseudo... 270 5e-70
M1ALN7_SOLTU (tr|M1ALN7) Uncharacterized protein OS=Solanum tube... 255 1e-65
M0W6H9_HORVD (tr|M0W6H9) Uncharacterized protein (Fragment) OS=H... 255 1e-65
M0W6I0_HORVD (tr|M0W6I0) Uncharacterized protein (Fragment) OS=H... 253 5e-65
M0W6I2_HORVD (tr|M0W6I2) Uncharacterized protein (Fragment) OS=H... 253 6e-65
N1R4Q2_AEGTA (tr|N1R4Q2) RNA pseudourine synthase 2, chloroplast... 222 1e-55
M8A1R1_TRIUA (tr|M8A1R1) RNA pseudourine synthase 2, chloroplast... 220 4e-55
D8S3A7_SELML (tr|D8S3A7) Putative uncharacterized protein OS=Sel... 215 2e-53
D8S7Y5_SELML (tr|D8S7Y5) Putative uncharacterized protein (Fragm... 212 1e-52
B9H5B8_POPTR (tr|B9H5B8) Predicted protein (Fragment) OS=Populus... 209 8e-52
C1N564_MICPC (tr|C1N564) Predicted protein OS=Micromonas pusilla... 194 3e-47
A8IAF7_CHLRE (tr|A8IAF7) RNA pseudouridine synthase (Fragment) O... 193 8e-47
K8EBP9_9CHLO (tr|K8EBP9) Pseudouridine synthase, RluA family OS=... 187 4e-45
I0Z189_9CHLO (tr|I0Z189) Pseudouridine synthase OS=Coccomyxa sub... 182 1e-43
Q016F9_OSTTA (tr|Q016F9) Ribosomal large subunit pseudouridine s... 180 5e-43
D8U860_VOLCA (tr|D8U860) RNA pseudouridine synthase mitochondria... 180 6e-43
D5H8E1_SALRM (tr|D5H8E1) Pseudouridine synthase OS=Salinibacter ... 180 7e-43
Q2S3B7_SALRD (tr|Q2S3B7) Pseudouridine synthase OS=Salinibacter ... 178 2e-42
A1ATW9_PELPD (tr|A1ATW9) Pseudouridine synthase OS=Pelobacter pr... 169 7e-40
A4RT55_OSTLU (tr|A4RT55) Predicted protein (Fragment) OS=Ostreoc... 169 1e-39
B7K9I8_CYAP7 (tr|B7K9I8) Pseudouridine synthase OS=Cyanothece sp... 169 1e-39
K2EW97_9BACT (tr|K2EW97) Pseudouridine synthase OS=uncultured ba... 169 2e-39
G8AN44_AZOBR (tr|G8AN44) Pseudouridine synthase OS=Azospirillum ... 167 5e-39
G2SJ35_RHOMR (tr|G2SJ35) Pseudouridine synthase OS=Rhodothermus ... 167 5e-39
F0S472_DESTD (tr|F0S472) Pseudouridine synthase OS=Desulfurobact... 167 6e-39
R5UZ36_9FIRM (tr|R5UZ36) Pseudouridine synthase OS=Ruminococcus ... 166 6e-39
R6DYF0_9FIRM (tr|R6DYF0) Pseudouridine synthase OS=Ruminococcus ... 165 1e-38
R5XXL5_9FIRM (tr|R5XXL5) Pseudouridine synthase OS=Ruminococcus ... 165 2e-38
E0U8Z4_CYAP2 (tr|E0U8Z4) Pseudouridine synthase OS=Cyanothece sp... 165 2e-38
D0MJ49_RHOM4 (tr|D0MJ49) Pseudouridine synthase OS=Rhodothermus ... 164 2e-38
C4L5V7_EXISA (tr|C4L5V7) Pseudouridine synthase OS=Exiguobacteri... 164 5e-38
K9T246_9CYAN (tr|K9T246) Pseudouridine synthase OS=Pleurocapsa s... 164 5e-38
D3P6K6_AZOS1 (tr|D3P6K6) Pseudouridine synthase OS=Azospirillum ... 163 6e-38
F1TEN0_9CLOT (tr|F1TEN0) Pseudouridine synthase OS=Clostridium p... 163 6e-38
B8I767_CLOCE (tr|B8I767) Pseudouridine synthase OS=Clostridium c... 163 7e-38
E0E1U2_9FIRM (tr|E0E1U2) Pseudouridine synthase OS=Peptostreptoc... 162 1e-37
R6CBH2_9FIRM (tr|R6CBH2) Pseudouridine synthase OS=Ruminococcus ... 162 2e-37
R5FRZ8_9FIRM (tr|R5FRZ8) Pseudouridine synthase OS=Coprobacillus... 162 2e-37
H2JIX0_9CLOT (tr|H2JIX0) Pseudouridine synthase OS=Clostridium s... 162 2e-37
G7ZFR5_AZOL4 (tr|G7ZFR5) Pseudouridine synthase OS=Azospirillum ... 161 2e-37
R7M9F0_9CLOT (tr|R7M9F0) Pseudouridine synthase OS=Clostridium s... 161 2e-37
B2J484_NOSP7 (tr|B2J484) Pseudouridine synthase, RluA family OS=... 161 2e-37
K9XSW9_STAC7 (tr|K9XSW9) Pseudouridine synthase OS=Stanieria cya... 161 3e-37
B4WRY1_9SYNE (tr|B4WRY1) Pseudouridine synthase OS=Synechococcus... 160 4e-37
A0L9J0_MAGSM (tr|A0L9J0) Pseudouridine synthase OS=Magnetococcus... 160 4e-37
B8HL83_CYAP4 (tr|B8HL83) Pseudouridine synthase, RluA family OS=... 160 4e-37
B7R5S1_9THEO (tr|B7R5S1) Pseudouridine synthase OS=Carboxydibrac... 160 4e-37
H5S8P3_9CHLR (tr|H5S8P3) Pseudouridine synthase OS=uncultured Ch... 160 5e-37
R5RK88_9CLOT (tr|R5RK88) Pseudouridine synthase OS=Clostridium s... 160 6e-37
K9YCW9_HALP7 (tr|K9YCW9) Pseudouridine synthase OS=Halothece sp.... 160 7e-37
Q9F461_NOSS1 (tr|Q9F461) Alr0522 protein OS=Nostoc sp. (strain P... 159 8e-37
D5RX53_CLODI (tr|D5RX53) Pseudouridine synthase OS=Clostridium d... 159 9e-37
D5Q249_CLODI (tr|D5Q249) Pseudouridine synthase OS=Clostridium d... 159 9e-37
K9QG04_9NOSO (tr|K9QG04) Ribosomal large subunit pseudouridine s... 159 1e-36
K9SDW2_9CYAN (tr|K9SDW2) Pseudouridine synthase OS=Geitlerinema ... 159 1e-36
G6BND2_CLODI (tr|G6BND2) Pseudouridine synthase OS=Clostridium d... 159 1e-36
G6BDC0_CLODI (tr|G6BDC0) Pseudouridine synthase OS=Clostridium d... 159 1e-36
L0K8K9_HALHC (tr|L0K8K9) Pseudouridine synthase OS=Halobacteroid... 159 1e-36
K9YU80_DACSA (tr|K9YU80) Pseudouridine synthase OS=Dactylococcop... 159 2e-36
C9YPG9_CLODR (tr|C9YPG9) Pseudouridine synthase OS=Clostridium d... 159 2e-36
C9XMW5_CLODC (tr|C9XMW5) Pseudouridine synthase OS=Clostridium d... 159 2e-36
R5SL10_9FIRM (tr|R5SL10) Pseudouridine synthase OS=Firmicutes ba... 158 2e-36
G6BZR4_CLODI (tr|G6BZR4) Pseudouridine synthase OS=Clostridium d... 158 2e-36
K2M6L9_9PROT (tr|K2M6L9) Pseudouridine synthase OS=Thalassospira... 158 2e-36
Q182T6_CLOD6 (tr|Q182T6) Pseudouridine synthase OS=Clostridium d... 158 2e-36
K8ZB62_9ENTE (tr|K8ZB62) Pseudouridine synthase OS=Catellicoccus... 157 3e-36
F5UNW1_9CYAN (tr|F5UNW1) Pseudouridine synthase, RluA family OS=... 157 3e-36
K8GJQ9_9CYAN (tr|K8GJQ9) Ribosomal large subunit pseudouridine s... 157 4e-36
K9VJ80_9CYAN (tr|K9VJ80) Ribosomal large subunit pseudouridine s... 157 5e-36
E8N3K0_ANATU (tr|E8N3K0) Pseudouridine synthase OS=Anaerolinea t... 156 7e-36
B2UL66_AKKM8 (tr|B2UL66) Pseudouridine synthase OS=Akkermansia m... 156 9e-36
M1YZL6_9CLOT (tr|M1YZL6) Pseudouridylate synthase OS=Clostridium... 156 9e-36
I0I6T0_CALAS (tr|I0I6T0) Pseudouridine synthase OS=Caldilinea ae... 156 9e-36
L8M0F7_9CYAN (tr|L8M0F7) Pseudouridine synthase OS=Xenococcus sp... 156 1e-35
D6GS38_FILAD (tr|D6GS38) Pseudouridine synthase OS=Filifactor al... 155 1e-35
D3PQ17_MEIRD (tr|D3PQ17) Pseudouridine synthase OS=Meiothermus r... 155 1e-35
B0C246_ACAM1 (tr|B0C246) Pseudouridine synthase OS=Acaryochloris... 155 1e-35
R6U5F3_9CLOT (tr|R6U5F3) Pseudouridine synthase OS=Clostridium s... 155 1e-35
H1W8Z4_9CYAN (tr|H1W8Z4) 23S rRNA pseudouridine synthase OS=Arth... 155 1e-35
H3NES8_9LACT (tr|H3NES8) Pseudouridine synthase OS=Dolosigranulu... 155 2e-35
R7MNI6_9FIRM (tr|R7MNI6) Pseudouridine synthase OS=Ruminococcus ... 155 2e-35
N4WDF0_9BACI (tr|N4WDF0) Uncharacterized protein OS=Gracilibacil... 155 2e-35
J4WX34_9FIRM (tr|J4WX34) Pseudouridine synthase OS=Selenomonas s... 155 2e-35
K1WYV4_SPIPL (tr|K1WYV4) Pseudouridine synthase RluA family OS=A... 155 2e-35
B5W1E5_SPIMA (tr|B5W1E5) Pseudouridine synthase, RluA family OS=... 155 2e-35
R7L7F4_9CLOT (tr|R7L7F4) Pseudouridine synthase OS=Clostridium s... 154 2e-35
Q9K9V3_BACHD (tr|Q9K9V3) Pseudouridine synthase OS=Bacillus halo... 154 3e-35
R5SYM7_9CLOT (tr|R5SYM7) Pseudouridine synthase OS=Clostridium s... 154 3e-35
K9RG13_9CYAN (tr|K9RG13) Ribosomal large subunit pseudouridine s... 154 3e-35
C0ZG48_BREBN (tr|C0ZG48) Pseudouridine synthase OS=Brevibacillus... 154 4e-35
R7FUL2_9FIRM (tr|R7FUL2) Pseudouridine synthase RluA family OS=D... 154 4e-35
C1FEQ4_MICSR (tr|C1FEQ4) Predicted protein OS=Micromonas sp. (st... 154 4e-35
R7H5I2_9FIRM (tr|R7H5I2) Pseudouridine synthase OS=Ruminococcus ... 154 5e-35
R6TIS3_9STAP (tr|R6TIS3) Pseudouridine synthase OS=Staphylococcu... 154 5e-35
M8BU77_AEGTA (tr|M8BU77) RNA pseudourine synthase 2, chloroplast... 153 6e-35
R5XVE6_9CLOT (tr|R5XVE6) Pseudouridine synthase OS=Clostridium s... 153 6e-35
I5C7Q8_9BACT (tr|I5C7Q8) Pseudouridine synthase OS=Nitritalea ha... 153 6e-35
A0Q073_CLONN (tr|A0Q073) Pseudouridine synthase OS=Clostridium n... 153 6e-35
R1CRJ4_9CLOT (tr|R1CRJ4) Ribosomal large subunit pseudouridine s... 153 7e-35
F6DN26_DESRL (tr|F6DN26) Pseudouridine synthase OS=Desulfotomacu... 153 7e-35
J2GGM3_9BACL (tr|J2GGM3) Pseudouridine synthase OS=Brevibacillus... 153 7e-35
C6JJ92_FUSVA (tr|C6JJ92) Pseudouridine synthase OS=Fusobacterium... 153 8e-35
C9LW07_SELS3 (tr|C9LW07) Pseudouridine synthase OS=Selenomonas s... 153 8e-35
D4TPJ7_9NOST (tr|D4TPJ7) Pseudouridine synthase, RluD OS=Raphidi... 152 1e-34
R6XD98_9FIRM (tr|R6XD98) Pseudouridine synthase OS=Firmicutes ba... 152 1e-34
G5J4S5_CROWT (tr|G5J4S5) Pseudouridine synthase OS=Crocosphaera ... 152 1e-34
I3Z3Y2_BELBD (tr|I3Z3Y2) Pseudouridine synthase OS=Belliella bal... 152 2e-34
F6CAU4_LACKZ (tr|F6CAU4) Pseudouridine synthase OS=Lactobacillus... 152 2e-34
G2ZC07_LISIP (tr|G2ZC07) Pseudouridine synthase OS=Listeria ivan... 152 2e-34
R9KG71_9FIRM (tr|R9KG71) RluA family pseudouridine synthase OS=L... 152 2e-34
Q2LWV4_SYNAS (tr|Q2LWV4) Pseudouridine synthase OS=Syntrophus ac... 152 2e-34
D4TI16_9NOST (tr|D4TI16) Pseudouridine synthase, RluD OS=Cylindr... 152 2e-34
Q4CAB3_CROWT (tr|Q4CAB3) Pseudouridine synthase OS=Crocosphaera ... 151 2e-34
H8FQP2_RHOMO (tr|H8FQP2) Pseudouridine synthase OS=Phaeospirillu... 151 2e-34
A1BGX7_CHLPD (tr|A1BGX7) Pseudouridine synthase OS=Chlorobium ph... 151 2e-34
B1BJ10_CLOPF (tr|B1BJ10) Pseudouridine synthase OS=Clostridium p... 151 2e-34
Q8XJB1_CLOPE (tr|Q8XJB1) Pseudouridine synthase OS=Clostridium p... 151 2e-34
Q0TPA7_CLOP1 (tr|Q0TPA7) Pseudouridine synthase OS=Clostridium p... 151 2e-34
H7CXP4_CLOPF (tr|H7CXP4) Pseudouridine synthase OS=Clostridium p... 151 2e-34
H1CSI5_CLOPF (tr|H1CSI5) Pseudouridine synthase OS=Clostridium p... 151 2e-34
B1R8W0_CLOPF (tr|B1R8W0) Pseudouridine synthase OS=Clostridium p... 151 2e-34
B1BT59_CLOPF (tr|B1BT59) Pseudouridine synthase OS=Clostridium p... 151 2e-34
B1V3U6_CLOPF (tr|B1V3U6) Pseudouridine synthase OS=Clostridium p... 151 2e-34
L5MQI6_9BACL (tr|L5MQI6) Pseudouridine synthase OS=Brevibacillus... 151 3e-34
J2QR32_9BACL (tr|J2QR32) Pseudouridine synthase OS=Brevibacillus... 151 3e-34
K2K4L1_9PROT (tr|K2K4L1) Pseudouridine synthase OS=Oceanibaculum... 150 4e-34
I0AGT1_IGNAJ (tr|I0AGT1) Pseudouridine synthase OS=Ignavibacteri... 150 4e-34
Q01Q94_SOLUE (tr|Q01Q94) Pseudouridine synthase OS=Solibacter us... 150 4e-34
F8C2I2_THESO (tr|F8C2I2) Pseudouridine synthase OS=Thermodesulfo... 150 4e-34
D0BKA1_9LACT (tr|D0BKA1) Pseudouridine synthase OS=Granulicatell... 150 4e-34
M7XEJ6_9BACT (tr|M7XEJ6) Ribosomal large subunit pseudouridine s... 150 5e-34
K6EGP6_SPIPL (tr|K6EGP6) RluA family pseudouridine synthase OS=A... 150 5e-34
D4ZTU2_SPIPL (tr|D4ZTU2) Probable pseudouridine synthase OS=Arth... 150 5e-34
D9S300_THEOJ (tr|D9S300) Pseudouridine synthase OS=Thermosedimin... 150 6e-34
B3QSN0_CHLT3 (tr|B3QSN0) Pseudouridine synthase OS=Chloroherpeto... 150 6e-34
B9MS18_CALBD (tr|B9MS18) Pseudouridine synthase OS=Caldicellulos... 150 6e-34
G7V9W8_THELD (tr|G7V9W8) Pseudouridine synthase OS=Thermovirga l... 150 6e-34
Q8ER39_OCEIH (tr|Q8ER39) Pseudouridine synthase OS=Oceanobacillu... 150 7e-34
C5URZ4_CLOBO (tr|C5URZ4) Pseudouridine synthase OS=Clostridium b... 150 7e-34
J6H7Y5_9FIRM (tr|J6H7Y5) Pseudouridine synthase OS=Mogibacterium... 150 7e-34
G2PTT6_9FIRM (tr|G2PTT6) Pseudouridine synthase OS=Caldicellulos... 150 7e-34
L0FW74_ECHVK (tr|L0FW74) Pseudouridine synthase OS=Echinicola vi... 149 8e-34
C0GJQ1_9FIRM (tr|C0GJQ1) Pseudouridine synthase OS=Dethiobacter ... 149 8e-34
D4YSY4_9LACO (tr|D4YSY4) Pseudouridine synthase OS=Lactobacillus... 149 8e-34
D5GXR7_LACCS (tr|D5GXR7) Pseudouridine synthase OS=Lactobacillus... 149 9e-34
K1MCA0_9LACO (tr|K1MCA0) Pseudouridine synthase OS=Lactobacillus... 149 9e-34
E3R3F5_9LACO (tr|E3R3F5) Pseudouridine synthase OS=Lactobacillus... 149 9e-34
D4FDJ1_9LACO (tr|D4FDJ1) Pseudouridine synthase OS=Lactobacillus... 149 9e-34
C7Y7E0_9LACO (tr|C7Y7E0) Pseudouridine synthase OS=Lactobacillus... 149 9e-34
C7XHD2_9LACO (tr|C7XHD2) Pseudouridine synthase OS=Lactobacillus... 149 9e-34
C2KFB3_9LACO (tr|C2KFB3) Pseudouridine synthase OS=Lactobacillus... 149 9e-34
J7IUX7_DESMD (tr|J7IUX7) Pseudouridine synthase OS=Desulfosporos... 149 9e-34
D2BIX0_DEHSV (tr|D2BIX0) Pseudouridine synthase OS=Dehalococcoid... 149 1e-33
R6WBS0_9FIRM (tr|R6WBS0) Pseudouridine synthase RluA family OS=D... 149 1e-33
D0DGI5_9LACO (tr|D0DGI5) Pseudouridine synthase OS=Lactobacillus... 149 1e-33
R7M6F3_9CLOT (tr|R7M6F3) Pseudouridine synthase OS=Clostridium s... 149 1e-33
A4XKS8_CALS8 (tr|A4XKS8) Pseudouridine synthase OS=Caldicellulos... 149 1e-33
R8W565_9CLOT (tr|R8W565) RluA family pseudouridine synthase OS=B... 149 1e-33
Q67Q15_SYMTH (tr|Q67Q15) Pseudouridine synthase OS=Symbiobacteri... 149 1e-33
F2LZV7_LACAL (tr|F2LZV7) Pseudouridine synthase OS=Lactobacillus... 149 1e-33
F0TF63_LACA3 (tr|F0TF63) Pseudouridine synthase OS=Lactobacillus... 149 1e-33
E4SJG2_LACAR (tr|E4SJG2) Pseudouridine synthase OS=Lactobacillus... 149 1e-33
A8YVI7_LACH4 (tr|A8YVI7) Pseudouridine synthase OS=Lactobacillus... 149 1e-33
R5ZFK4_9LACO (tr|R5ZFK4) Pseudouridine synthase OS=Lactobacillus... 149 1e-33
K2MLB9_9PROT (tr|K2MLB9) Pseudouridine synthase OS=Thalassospira... 149 1e-33
F0NSN2_LACHH (tr|F0NSN2) Pseudouridine synthase OS=Lactobacillus... 149 1e-33
R7BFB7_9FIRM (tr|R7BFB7) Pseudouridine synthase OS=Firmicutes ba... 149 1e-33
B1RKZ3_CLOPF (tr|B1RKZ3) Pseudouridine synthase OS=Clostridium p... 149 1e-33
Q0SRX4_CLOPS (tr|Q0SRX4) Pseudouridine synthase OS=Clostridium p... 149 1e-33
G0IUQ0_CYCMS (tr|G0IUQ0) Pseudouridine synthase OS=Cyclobacteriu... 149 1e-33
K2LLZ7_9RHIZ (tr|K2LLZ7) Pseudouridine synthase OS=Nitratireduct... 149 1e-33
K8DXA5_9FIRM (tr|K8DXA5) Pseudouridine synthase OS=Desulfotomacu... 149 1e-33
E2CJK4_9RHOB (tr|E2CJK4) Pseudouridine synthase OS=Roseibium sp.... 149 2e-33
E4Q1I4_CALOW (tr|E4Q1I4) Pseudouridine synthase OS=Caldicellulos... 149 2e-33
K9PV31_9CYAN (tr|K9PV31) Ribosomal large subunit pseudouridine s... 149 2e-33
R0EJL0_CAUCE (tr|R0EJL0) Ribosomal large subunit pseudouridine s... 148 2e-33
J3XA58_LACHE (tr|J3XA58) Pseudouridine synthase OS=Lactobacillus... 148 2e-33
Q3B4S5_PELLD (tr|Q3B4S5) Pseudouridine synthase OS=Pelodictyon l... 148 2e-33
K9RQ04_SYNP3 (tr|K9RQ04) Pseudouridine synthase OS=Synechococcus... 148 2e-33
K1M7W5_9LACO (tr|K1M7W5) Pseudouridine synthase OS=Lactobacillus... 148 2e-33
Q8KCW1_CHLTE (tr|Q8KCW1) Pseudouridine synthase OS=Chlorobium te... 148 2e-33
F4A2P9_MAHA5 (tr|F4A2P9) Pseudouridine synthase OS=Mahella austr... 148 2e-33
B2TS14_CLOBB (tr|B2TS14) Pseudouridine synthase OS=Clostridium b... 148 2e-33
R6RGL0_9FIRM (tr|R6RGL0) Pseudouridine synthase OS=Eubacterium s... 148 2e-33
R6D6D0_9CLOT (tr|R6D6D0) Pseudouridine synthase OS=Clostridium s... 148 2e-33
A9KKY5_CLOPH (tr|A9KKY5) Pseudouridine synthase OS=Clostridium p... 148 2e-33
R5XSD6_9PROT (tr|R5XSD6) Pseudouridine synthase OS=Acetobacter s... 148 2e-33
L7VPH8_CLOSH (tr|L7VPH8) Pseudouridine synthase D OS=Clostridium... 148 2e-33
H8LE72_ENTFU (tr|H8LE72) Pseudouridine synthase OS=Enterococcus ... 148 3e-33
R4FGC6_ENTFC (tr|R4FGC6) RluA family pseudouridine synthase OS=E... 148 3e-33
R4E7T4_ENTFC (tr|R4E7T4) RluA family pseudouridine synthase OS=E... 148 3e-33
R4E4C0_ENTFC (tr|R4E4C0) RluA family pseudouridine synthase OS=E... 148 3e-33
R4E2H2_ENTFC (tr|R4E2H2) RluA family pseudouridine synthase OS=E... 148 3e-33
R4DKN0_ENTFC (tr|R4DKN0) RluA family pseudouridine synthase OS=E... 148 3e-33
R4C2G0_ENTFC (tr|R4C2G0) RluA family pseudouridine synthase OS=E... 148 3e-33
R4B3K2_ENTFC (tr|R4B3K2) RluA family pseudouridine synthase OS=E... 148 3e-33
R3ZTH4_ENTFC (tr|R3ZTH4) RluA family pseudouridine synthase OS=E... 148 3e-33
R3YL98_ENTFC (tr|R3YL98) RluA family pseudouridine synthase OS=E... 148 3e-33
R3TQ42_ENTFC (tr|R3TQ42) RluA family pseudouridine synthase OS=E... 148 3e-33
R3T6Z7_ENTFC (tr|R3T6Z7) RluA family pseudouridine synthase OS=E... 148 3e-33
R4FAF3_ENTFC (tr|R4FAF3) RluA family pseudouridine synthase OS=E... 148 3e-33
R4D1C6_ENTFC (tr|R4D1C6) RluA family pseudouridine synthase OS=E... 148 3e-33
R4CXS8_ENTFC (tr|R4CXS8) RluA family pseudouridine synthase OS=E... 148 3e-33
R3SUF5_ENTFC (tr|R3SUF5) RluA family pseudouridine synthase OS=E... 148 3e-33
R3ST14_ENTFC (tr|R3ST14) RluA family pseudouridine synthase OS=E... 148 3e-33
R3S959_ENTFC (tr|R3S959) RluA family pseudouridine synthase OS=E... 148 3e-33
D4J3G9_BUTFI (tr|D4J3G9) Ribosomal large subunit pseudouridine s... 148 3e-33
R4E1F1_ENTFC (tr|R4E1F1) RluA family pseudouridine synthase OS=E... 148 3e-33
R4DUE4_ENTFC (tr|R4DUE4) RluA family pseudouridine synthase OS=E... 148 3e-33
R4CAT9_ENTFC (tr|R4CAT9) RluA family pseudouridine synthase OS=E... 148 3e-33
R4C1N4_ENTFC (tr|R4C1N4) RluA family pseudouridine synthase OS=E... 148 3e-33
R4BT04_ENTFC (tr|R4BT04) RluA family pseudouridine synthase OS=E... 148 3e-33
R4A516_ENTFC (tr|R4A516) RluA family pseudouridine synthase OS=E... 148 3e-33
R3VTJ8_ENTFC (tr|R3VTJ8) RluA family pseudouridine synthase OS=E... 148 3e-33
A4IM27_GEOTN (tr|A4IM27) Pseudouridine synthase OS=Geobacillus t... 148 3e-33
B4BJB7_9BACI (tr|B4BJB7) Pseudouridine synthase OS=Geobacillus s... 148 3e-33
I3E4Z8_BACMT (tr|I3E4Z8) Pseudouridine synthase OS=Bacillus meth... 147 3e-33
M0W6I5_HORVD (tr|M0W6I5) Uncharacterized protein OS=Hordeum vulg... 147 3e-33
M0W6I6_HORVD (tr|M0W6I6) Uncharacterized protein OS=Hordeum vulg... 147 3e-33
N9Y1C6_9CLOT (tr|N9Y1C6) RluA family pseudouridine synthase OS=C... 147 3e-33
G9QMJ7_9BACI (tr|G9QMJ7) Pseudouridine synthase OS=Bacillus smit... 147 3e-33
B2V4U4_CLOBA (tr|B2V4U4) Pseudouridine synthase OS=Clostridium b... 147 3e-33
R6ZZA5_9FIRM (tr|R6ZZA5) Pseudouridine synthase OS=Roseburia sp.... 147 3e-33
Q5L0U9_GEOKA (tr|Q5L0U9) Pseudouridine synthase OS=Geobacillus k... 147 3e-33
E8SYY4_GEOS2 (tr|E8SYY4) Pseudouridine synthase OS=Geobacillus s... 147 3e-33
D7D095_GEOSC (tr|D7D095) Pseudouridine synthase OS=Geobacillus s... 147 3e-33
C9RZL2_GEOSY (tr|C9RZL2) Pseudouridine synthase OS=Geobacillus s... 147 3e-33
E4S895_CALKI (tr|E4S895) Pseudouridine synthase OS=Caldicellulos... 147 4e-33
R5P5K7_9FIRM (tr|R5P5K7) Pseudouridine synthase OS=Eubacterium s... 147 4e-33
D4JRY2_9FIRM (tr|D4JRY2) Pseudouridine synthase OS=Eubacterium s... 147 5e-33
D0CSW7_9RHOB (tr|D0CSW7) Pseudouridine synthase OS=Silicibacter ... 147 5e-33
B0MNR7_9FIRM (tr|B0MNR7) Pseudouridine synthase OS=Eubacterium s... 147 5e-33
R7ZNM7_9BACT (tr|R7ZNM7) Ribosomal large subunit pseudouridine s... 147 5e-33
R6R7N8_9FIRM (tr|R6R7N8) Pseudouridine synthase OS=Eubacterium s... 147 5e-33
E4QAA3_CALH1 (tr|E4QAA3) Pseudouridine synthase OS=Caldicellulos... 147 5e-33
Q3ZYT0_DEHSC (tr|Q3ZYT0) Pseudouridine synthase OS=Dehalococcoid... 147 5e-33
M8DDP7_9BACL (tr|M8DDP7) Pseudouridine synthase OS=Brevibacillus... 147 5e-33
H1HRT8_9FIRM (tr|H1HRT8) Pseudouridine synthase OS=Stomatobaculu... 147 6e-33
E4SZH1_LACDN (tr|E4SZH1) Pseudouridine synthase OS=Lactobacillus... 147 6e-33
R7R886_9FIRM (tr|R7R886) Uncharacterized protein OS=Roseburia sp... 147 6e-33
D8FPK4_LACDE (tr|D8FPK4) Pseudouridine synthase OS=Lactobacillus... 147 6e-33
M1Q1E8_9CHLR (tr|M1Q1E8) Pseudouridine synthase OS=Dehalococcoid... 146 7e-33
C9MX56_9FUSO (tr|C9MX56) Pseudouridine synthase OS=Leptotrichia ... 146 7e-33
M0W6I3_HORVD (tr|M0W6I3) Uncharacterized protein OS=Hordeum vulg... 146 7e-33
R5QBP5_9FIRM (tr|R5QBP5) Pseudouridine synthase OS=Ruminococcus ... 146 8e-33
C2HPT0_LACAI (tr|C2HPT0) Pseudouridine synthase OS=Lactobacillus... 146 8e-33
R6YEW8_9CLOT (tr|R6YEW8) Pseudouridine synthase OS=Clostridium s... 146 8e-33
C5CGU5_KOSOT (tr|C5CGU5) Pseudouridine synthase OS=Kosmotoga ole... 146 8e-33
R5ZH06_9FIRM (tr|R5ZH06) Pseudouridine synthase OS=Eubacterium s... 146 8e-33
Q5FJY4_LACAC (tr|Q5FJY4) Pseudouridine synthase OS=Lactobacillus... 146 8e-33
R4K1A1_LACAI (tr|R4K1A1) Ribosomal large subunit pseudouridine s... 146 8e-33
R7NQP7_9FIRM (tr|R7NQP7) Pseudouridine synthase OS=Eubacterium s... 146 9e-33
Q0YRS3_9CHLB (tr|Q0YRS3) Pseudouridine synthase OS=Chlorobium fe... 146 9e-33
R0P681_BACAT (tr|R0P681) Ribosomal large subunit pseudouridine s... 146 9e-33
Q3Z6R3_DEHE1 (tr|Q3Z6R3) Pseudouridine synthase OS=Dehalococcoid... 146 1e-32
E3DZS5_BACA1 (tr|E3DZS5) Pseudouridine synthase OS=Bacillus atro... 146 1e-32
R1D3Z1_9LACO (tr|R1D3Z1) Pseudouridine synthase OS=Lactobacillus... 146 1e-32
I4XAN7_BACAT (tr|I4XAN7) Pseudouridine synthase OS=Bacillus atro... 146 1e-32
C3WY67_9FUSO (tr|C3WY67) Pseudouridine synthase OS=Fusobacterium... 146 1e-32
B9NTP2_9RHOB (tr|B9NTP2) Pseudouridine synthase OS=Rhodobacterac... 146 1e-32
E4RLV3_HALSL (tr|E4RLV3) Pseudouridine synthase OS=Halanaerobium... 146 1e-32
F3B925_9FIRM (tr|F3B925) Putative uncharacterized protein OS=Lac... 146 1e-32
H1HHQ4_FUSNU (tr|H1HHQ4) Pseudouridine synthase OS=Fusobacterium... 145 1e-32
F7L206_9FUSO (tr|F7L206) Pseudouridine synthase OS=Fusobacterium... 145 1e-32
Q39Q27_GEOMG (tr|Q39Q27) Pseudouridine synthase OS=Geobacter met... 145 1e-32
H1LB86_GEOME (tr|H1LB86) Pseudouridine synthase OS=Geobacter met... 145 1e-32
A4CP89_ROBBH (tr|A4CP89) Pseudouridine synthase OS=Robiginitalea... 145 1e-32
R7HEN4_9FIRM (tr|R7HEN4) Pseudouridine synthase OS=Eubacterium s... 145 1e-32
F7ME07_9FUSO (tr|F7ME07) Pseudouridine synthase OS=Fusobacterium... 145 1e-32
H1AGN4_9FIRM (tr|H1AGN4) Pseudouridine synthase OS=Coprobacillus... 145 1e-32
G9R155_9FIRM (tr|G9R155) Pseudouridine synthase OS=Coprobacillus... 145 1e-32
B0N2Q1_9FIRM (tr|B0N2Q1) Pseudouridine synthase OS=Clostridium r... 145 1e-32
C3RK97_9FIRM (tr|C3RK97) Pseudouridine synthase OS=Coprobacillus... 145 1e-32
R5QTT0_9FIRM (tr|R5QTT0) Pseudouridine synthase OS=Coprobacillus... 145 2e-32
I9MED1_9FIRM (tr|I9MED1) Pseudouridine synthase, RluA family OS=... 145 2e-32
I9LZY5_9FIRM (tr|I9LZY5) Pseudouridine synthase, RluA family OS=... 145 2e-32
I9LCF4_9FIRM (tr|I9LCF4) Pseudouridine synthase, RluA family OS=... 145 2e-32
I9BYJ1_9FIRM (tr|I9BYJ1) Pseudouridine synthase, RluA family OS=... 145 2e-32
I9BGD7_9FIRM (tr|I9BGD7) Pseudouridine synthase, RluA family OS=... 145 2e-32
D0BU07_9FUSO (tr|D0BU07) Pseudouridine synthase OS=Fusobacterium... 145 2e-32
K0B0U6_CLOA9 (tr|K0B0U6) Pseudouridine synthase OS=Clostridium a... 145 2e-32
C5VT12_CLOBO (tr|C5VT12) Pseudouridine synthase OS=Clostridium b... 145 2e-32
J0ZVI2_BARTA (tr|J0ZVI2) Pseudouridine synthase OS=Bartonella ta... 145 2e-32
E6IT87_ENTFL (tr|E6IT87) Pseudouridine synthase OS=Enterococcus ... 145 2e-32
E6IH49_ENTFL (tr|E6IH49) Pseudouridine synthase OS=Enterococcus ... 145 2e-32
E6HES0_ENTFL (tr|E6HES0) Pseudouridine synthase OS=Enterococcus ... 145 2e-32
E6EPJ3_ENTFT (tr|E6EPJ3) Pseudouridine synthase OS=Enterococcus ... 145 2e-32
E0HEU6_ENTFL (tr|E0HEU6) Pseudouridine synthase OS=Enterococcus ... 145 2e-32
E0GLA9_ENTFL (tr|E0GLA9) Pseudouridine synthase OS=Enterococcus ... 145 2e-32
C2DCC3_ENTFL (tr|C2DCC3) Pseudouridine synthase OS=Enterococcus ... 145 2e-32
R4B249_ENTFL (tr|R4B249) RluA family pseudouridine synthase OS=E... 145 2e-32
R4ATG2_ENTFL (tr|R4ATG2) RluA family pseudouridine synthase OS=E... 145 2e-32
R4A2Z1_ENTFL (tr|R4A2Z1) RluA family pseudouridine synthase OS=E... 145 2e-32
R3ZV76_ENTFL (tr|R3ZV76) RluA family pseudouridine synthase OS=E... 145 2e-32
R3ZDS5_ENTFL (tr|R3ZDS5) RluA family pseudouridine synthase OS=E... 145 2e-32
R3VYN1_ENTFL (tr|R3VYN1) RluA family pseudouridine synthase OS=E... 145 2e-32
R3VFA5_ENTFL (tr|R3VFA5) RluA family pseudouridine synthase OS=E... 145 2e-32
R3MEY7_ENTFL (tr|R3MEY7) RluA family pseudouridine synthase OS=E... 145 2e-32
R3MBV9_ENTFL (tr|R3MBV9) RluA family pseudouridine synthase OS=E... 145 2e-32
R3KCQ1_ENTFL (tr|R3KCQ1) RluA family pseudouridine synthase OS=E... 145 2e-32
R3KB50_ENTFL (tr|R3KB50) RluA family pseudouridine synthase OS=E... 145 2e-32
R3K1W7_ENTFL (tr|R3K1W7) RluA family pseudouridine synthase OS=E... 145 2e-32
R3JW51_ENTFL (tr|R3JW51) RluA family pseudouridine synthase OS=E... 145 2e-32
R3IHK8_ENTFL (tr|R3IHK8) RluA family pseudouridine synthase OS=E... 145 2e-32
R3F317_ENTFL (tr|R3F317) RluA family pseudouridine synthase OS=E... 145 2e-32
R2W909_ENTFL (tr|R2W909) RluA family pseudouridine synthase OS=E... 145 2e-32
R2TFC3_ENTFL (tr|R2TFC3) RluA family pseudouridine synthase OS=E... 145 2e-32
K8FJC8_ENTFL (tr|K8FJC8) Pseudouridine synthase OS=Enterococcus ... 145 2e-32
E1EQQ9_ENTFL (tr|E1EQQ9) Pseudouridine synthase OS=Enterococcus ... 145 2e-32
C7YBE8_ENTFL (tr|C7YBE8) Pseudouridine synthase OS=Enterococcus ... 145 2e-32
C7UHE8_ENTFL (tr|C7UHE8) Pseudouridine synthase OS=Enterococcus ... 145 2e-32
R5Z322_9CLOT (tr|R5Z322) Pseudouridine synthase OS=Clostridium s... 145 2e-32
K9ESY4_9LACT (tr|K9ESY4) Pseudouridine synthase OS=Alloiococcus ... 145 2e-32
R2S622_9ENTE (tr|R2S622) RluA family pseudouridine synthase OS=E... 145 2e-32
R5UL33_9FIRM (tr|R5UL33) Pseudouridine synthase RluA family OS=R... 145 2e-32
H0A5R6_9PROT (tr|H0A5R6) Pseudouridine synthase OS=Acetobacterac... 145 2e-32
C9LZ02_LACHE (tr|C9LZ02) Pseudouridine synthase OS=Lactobacillus... 145 2e-32
B3EQ53_CHLPB (tr|B3EQ53) Pseudouridine synthase OS=Chlorobium ph... 145 2e-32
R5TCN5_9CLOT (tr|R5TCN5) Pseudouridine synthase OS=Clostridium s... 145 2e-32
J8S260_FUSNU (tr|J8S260) Pseudouridine synthase OS=Fusobacterium... 144 2e-32
B1B988_CLOBO (tr|B1B988) Pseudouridine synthase OS=Clostridium b... 144 2e-32
C7WL51_ENTFL (tr|C7WL51) Pseudouridine synthase OS=Enterococcus ... 144 3e-32
F0HT32_LACDL (tr|F0HT32) Pseudouridine synthase OS=Lactobacillus... 144 3e-32
E6GHQ1_ENTFL (tr|E6GHQ1) Pseudouridine synthase OS=Enterococcus ... 144 3e-32
R5T2D9_9CLOT (tr|R5T2D9) Pseudouridine synthase OS=Clostridium s... 144 3e-32
M1Q5J8_9CHLR (tr|M1Q5J8) Pseudouridine synthase OS=Dehalococcoid... 144 3e-32
D6BHW1_9FUSO (tr|D6BHW1) Pseudouridine synthase OS=Fusobacterium... 144 3e-32
R5NYI0_9CLOT (tr|R5NYI0) Pseudouridine synthase OS=Clostridium s... 144 3e-32
J6GMQ8_ENTFL (tr|J6GMQ8) Pseudouridine synthase OS=Enterococcus ... 144 3e-32
E6I204_ENTFL (tr|E6I204) Pseudouridine synthase OS=Enterococcus ... 144 3e-32
E6FFZ4_ENTFL (tr|E6FFZ4) Pseudouridine synthase OS=Enterococcus ... 144 3e-32
E0GDR7_ENTFL (tr|E0GDR7) Pseudouridine synthase OS=Enterococcus ... 144 3e-32
D3SJU6_DEHSG (tr|D3SJU6) Pseudouridine synthase OS=Dehalococcoid... 144 3e-32
A5FPV8_DEHSB (tr|A5FPV8) Pseudouridine synthase OS=Dehalococcoid... 144 3e-32
Q8RDX2_FUSNN (tr|Q8RDX2) Pseudouridine synthase OS=Fusobacterium... 144 3e-32
D5RB23_FUSNC (tr|D5RB23) Pseudouridine synthase OS=Fusobacterium... 144 3e-32
R3VSQ3_ENTFL (tr|R3VSQ3) RluA family pseudouridine synthase OS=E... 144 3e-32
R3UQP2_ENTFL (tr|R3UQP2) RluA family pseudouridine synthase OS=E... 144 3e-32
R3UL37_ENTFL (tr|R3UL37) RluA family pseudouridine synthase OS=E... 144 3e-32
R3NMK3_ENTFL (tr|R3NMK3) RluA family pseudouridine synthase OS=E... 144 3e-32
R3JCR5_ENTFL (tr|R3JCR5) RluA family pseudouridine synthase OS=E... 144 3e-32
R3I719_ENTFL (tr|R3I719) RluA family pseudouridine synthase OS=E... 144 3e-32
R3I3A7_ENTFL (tr|R3I3A7) RluA family pseudouridine synthase OS=E... 144 3e-32
R3I080_ENTFL (tr|R3I080) RluA family pseudouridine synthase OS=E... 144 3e-32
R3HLP5_ENTFL (tr|R3HLP5) RluA family pseudouridine synthase OS=E... 144 3e-32
R3GIW7_ENTFL (tr|R3GIW7) RluA family pseudouridine synthase OS=E... 144 3e-32
R3D6F2_ENTFL (tr|R3D6F2) RluA family pseudouridine synthase OS=E... 144 3e-32
R3D4F8_ENTFL (tr|R3D4F8) RluA family pseudouridine synthase OS=E... 144 3e-32
R2X175_ENTFL (tr|R2X175) RluA family pseudouridine synthase OS=E... 144 3e-32
R2TB70_ENTFL (tr|R2TB70) RluA family pseudouridine synthase OS=E... 144 3e-32
R2DV96_ENTFL (tr|R2DV96) RluA family pseudouridine synthase OS=E... 144 3e-32
R1XU30_ENTFL (tr|R1XU30) RluA family pseudouridine synthase OS=E... 144 3e-32
R1XF82_ENTFL (tr|R1XF82) RluA family pseudouridine synthase OS=E... 144 3e-32
R1XB36_ENTFL (tr|R1XB36) RluA family pseudouridine synthase OS=E... 144 3e-32
R1X5N6_ENTFL (tr|R1X5N6) RluA family pseudouridine synthase OS=E... 144 3e-32
R1X5F3_ENTFL (tr|R1X5F3) RluA family pseudouridine synthase OS=E... 144 3e-32
R1WDV1_ENTFL (tr|R1WDV1) RluA family pseudouridine synthase OS=E... 144 3e-32
R1W3R7_ENTFL (tr|R1W3R7) RluA family pseudouridine synthase OS=E... 144 3e-32
R1RMK2_ENTFL (tr|R1RMK2) RluA family pseudouridine synthase OS=E... 144 3e-32
D4MBP5_9ENTE (tr|D4MBP5) Pseudouridine synthase OS=Enterococcus ... 144 3e-32
C7VMY4_ENTFL (tr|C7VMY4) Pseudouridine synthase OS=Enterococcus ... 144 3e-32
C7W266_ENTFL (tr|C7W266) Pseudouridine synthase OS=Enterococcus ... 144 3e-32
R6YBC7_9FIRM (tr|R6YBC7) Pseudouridine synthase OS=Firmicutes ba... 144 3e-32
F0PG58_ENTF6 (tr|F0PG58) Pseudouridine synthase OS=Enterococcus ... 144 4e-32
R4F5U3_ENTFL (tr|R4F5U3) RluA family pseudouridine synthase OS=E... 144 4e-32
R4EX84_ENTFL (tr|R4EX84) RluA family pseudouridine synthase OS=E... 144 4e-32
R4CBT5_ENTFL (tr|R4CBT5) RluA family pseudouridine synthase OS=E... 144 4e-32
R3ZKC3_ENTFL (tr|R3ZKC3) RluA family pseudouridine synthase OS=E... 144 4e-32
R3YEM3_ENTFL (tr|R3YEM3) RluA family pseudouridine synthase OS=E... 144 4e-32
R3X2J1_ENTFL (tr|R3X2J1) RluA family pseudouridine synthase OS=E... 144 4e-32
R3WFB5_ENTFL (tr|R3WFB5) RluA family pseudouridine synthase OS=E... 144 4e-32
R3WF10_ENTFL (tr|R3WF10) RluA family pseudouridine synthase OS=E... 144 4e-32
R3V5H9_ENTFL (tr|R3V5H9) RluA family pseudouridine synthase OS=E... 144 4e-32
R3URN9_ENTFL (tr|R3URN9) RluA family pseudouridine synthase OS=E... 144 4e-32
R3ULQ3_ENTFL (tr|R3ULQ3) RluA family pseudouridine synthase OS=E... 144 4e-32
R3UAG8_ENTFL (tr|R3UAG8) RluA family pseudouridine synthase OS=E... 144 4e-32
R3U381_ENTFL (tr|R3U381) RluA family pseudouridine synthase OS=E... 144 4e-32
R3TYK0_ENTFL (tr|R3TYK0) RluA family pseudouridine synthase OS=E... 144 4e-32
R3TFY4_ENTFL (tr|R3TFY4) RluA family pseudouridine synthase OS=E... 144 4e-32
R3PUU4_ENTFL (tr|R3PUU4) RluA family pseudouridine synthase OS=E... 144 4e-32
R3PLS2_ENTFL (tr|R3PLS2) RluA family pseudouridine synthase OS=E... 144 4e-32
R3PCA9_ENTFL (tr|R3PCA9) RluA family pseudouridine synthase OS=E... 144 4e-32
R3M3X9_ENTFL (tr|R3M3X9) RluA family pseudouridine synthase OS=E... 144 4e-32
R3LTH5_ENTFL (tr|R3LTH5) RluA family pseudouridine synthase OS=E... 144 4e-32
R3LKN6_ENTFL (tr|R3LKN6) RluA family pseudouridine synthase OS=E... 144 4e-32
R3LHE3_ENTFL (tr|R3LHE3) RluA family pseudouridine synthase OS=E... 144 4e-32
R3LE76_ENTFL (tr|R3LE76) RluA family pseudouridine synthase OS=E... 144 4e-32
R3LBN9_ENTFL (tr|R3LBN9) RluA family pseudouridine synthase OS=E... 144 4e-32
R3L8A6_ENTFL (tr|R3L8A6) RluA family pseudouridine synthase OS=E... 144 4e-32
R3JZH9_ENTFL (tr|R3JZH9) RluA family pseudouridine synthase OS=E... 144 4e-32
R3IRU5_ENTFL (tr|R3IRU5) RluA family pseudouridine synthase OS=E... 144 4e-32
R3I7W5_ENTFL (tr|R3I7W5) RluA family pseudouridine synthase OS=E... 144 4e-32
R3HXY8_ENTFL (tr|R3HXY8) RluA family pseudouridine synthase OS=E... 144 4e-32
R3HSM1_ENTFL (tr|R3HSM1) RluA family pseudouridine synthase OS=E... 144 4e-32
R3HG36_ENTFL (tr|R3HG36) RluA family pseudouridine synthase OS=E... 144 4e-32
R3GY62_ENTFL (tr|R3GY62) RluA family pseudouridine synthase OS=E... 144 4e-32
R3GXL9_ENTFL (tr|R3GXL9) RluA family pseudouridine synthase OS=E... 144 4e-32
R3GIA4_ENTFL (tr|R3GIA4) RluA family pseudouridine synthase OS=E... 144 4e-32
R3FWU8_ENTFL (tr|R3FWU8) RluA family pseudouridine synthase OS=E... 144 4e-32
R3FTJ0_ENTFL (tr|R3FTJ0) RluA family pseudouridine synthase OS=E... 144 4e-32
R3F594_ENTFL (tr|R3F594) RluA family pseudouridine synthase OS=E... 144 4e-32
R3EBC7_ENTFL (tr|R3EBC7) RluA family pseudouridine synthase OS=E... 144 4e-32
R3E2H1_ENTFL (tr|R3E2H1) RluA family pseudouridine synthase OS=E... 144 4e-32
R3DVT7_ENTFL (tr|R3DVT7) RluA family pseudouridine synthase OS=E... 144 4e-32
R3DLI6_ENTFL (tr|R3DLI6) RluA family pseudouridine synthase OS=E... 144 4e-32
R3DDJ6_ENTFL (tr|R3DDJ6) RluA family pseudouridine synthase OS=E... 144 4e-32
R3D7S5_ENTFL (tr|R3D7S5) RluA family pseudouridine synthase OS=E... 144 4e-32
R3CQV0_ENTFL (tr|R3CQV0) RluA family pseudouridine synthase OS=E... 144 4e-32
R3CEI0_ENTFL (tr|R3CEI0) RluA family pseudouridine synthase OS=E... 144 4e-32
R3CAB3_ENTFL (tr|R3CAB3) RluA family pseudouridine synthase OS=E... 144 4e-32
R3C218_ENTFL (tr|R3C218) RluA family pseudouridine synthase OS=E... 144 4e-32
R3BP51_ENTFL (tr|R3BP51) RluA family pseudouridine synthase OS=E... 144 4e-32
R3BB72_ENTFL (tr|R3BB72) RluA family pseudouridine synthase OS=E... 144 4e-32
R3AEA5_ENTFL (tr|R3AEA5) RluA family pseudouridine synthase OS=E... 144 4e-32
R2ZZL5_ENTFL (tr|R2ZZL5) RluA family pseudouridine synthase OS=E... 144 4e-32
R2ZP38_ENTFL (tr|R2ZP38) RluA family pseudouridine synthase OS=E... 144 4e-32
R2Y010_ENTFL (tr|R2Y010) RluA family pseudouridine synthase OS=E... 144 4e-32
R2XFV4_ENTFL (tr|R2XFV4) RluA family pseudouridine synthase OS=E... 144 4e-32
R2W4R0_ENTFL (tr|R2W4R0) RluA family pseudouridine synthase OS=E... 144 4e-32
R2VUS0_ENTFL (tr|R2VUS0) RluA family pseudouridine synthase OS=E... 144 4e-32
R2V195_ENTFL (tr|R2V195) RluA family pseudouridine synthase OS=E... 144 4e-32
R2UW11_ENTFL (tr|R2UW11) RluA family pseudouridine synthase OS=E... 144 4e-32
R2UDX1_ENTFL (tr|R2UDX1) RluA family pseudouridine synthase OS=E... 144 4e-32
R2S0H1_ENTFL (tr|R2S0H1) RluA family pseudouridine synthase OS=E... 144 4e-32
R2R746_ENTFL (tr|R2R746) RluA family pseudouridine synthase OS=E... 144 4e-32
R2PUR5_ENTFL (tr|R2PUR5) RluA family pseudouridine synthase OS=E... 144 4e-32
R2MT36_ENTFL (tr|R2MT36) RluA family pseudouridine synthase OS=E... 144 4e-32
R2M3L9_ENTFL (tr|R2M3L9) RluA family pseudouridine synthase OS=E... 144 4e-32
R2L8G9_ENTFL (tr|R2L8G9) RluA family pseudouridine synthase OS=E... 144 4e-32
R2L4F2_ENTFL (tr|R2L4F2) RluA family pseudouridine synthase OS=E... 144 4e-32
R2KS16_ENTFL (tr|R2KS16) RluA family pseudouridine synthase OS=E... 144 4e-32
R2KRE3_ENTFL (tr|R2KRE3) RluA family pseudouridine synthase OS=E... 144 4e-32
R2KIX4_ENTFL (tr|R2KIX4) RluA family pseudouridine synthase OS=E... 144 4e-32
R2KB81_ENTFL (tr|R2KB81) RluA family pseudouridine synthase OS=E... 144 4e-32
R2K5I7_ENTFL (tr|R2K5I7) RluA family pseudouridine synthase OS=E... 144 4e-32
R2JWB9_ENTFL (tr|R2JWB9) RluA family pseudouridine synthase OS=E... 144 4e-32
R2JHV3_ENTFL (tr|R2JHV3) RluA family pseudouridine synthase OS=E... 144 4e-32
R2JAZ1_ENTFL (tr|R2JAZ1) RluA family pseudouridine synthase OS=E... 144 4e-32
R2J592_ENTFL (tr|R2J592) RluA family pseudouridine synthase OS=E... 144 4e-32
R2J2E0_ENTFL (tr|R2J2E0) RluA family pseudouridine synthase OS=E... 144 4e-32
R2IXC6_ENTFL (tr|R2IXC6) RluA family pseudouridine synthase OS=E... 144 4e-32
R2IIY0_ENTFL (tr|R2IIY0) RluA family pseudouridine synthase OS=E... 144 4e-32
R2IHZ6_ENTFL (tr|R2IHZ6) RluA family pseudouridine synthase OS=E... 144 4e-32
R2IB83_ENTFL (tr|R2IB83) RluA family pseudouridine synthase OS=E... 144 4e-32
R2HTG0_ENTFL (tr|R2HTG0) RluA family pseudouridine synthase OS=E... 144 4e-32
R2HNP0_ENTFL (tr|R2HNP0) RluA family pseudouridine synthase OS=E... 144 4e-32
R2HHV9_ENTFL (tr|R2HHV9) RluA family pseudouridine synthase OS=E... 144 4e-32
R2GYH1_ENTFL (tr|R2GYH1) RluA family pseudouridine synthase OS=E... 144 4e-32
R2GQ45_ENTFL (tr|R2GQ45) RluA family pseudouridine synthase OS=E... 144 4e-32
R2GIC0_ENTFL (tr|R2GIC0) RluA family pseudouridine synthase OS=E... 144 4e-32
R2GFL0_ENTFL (tr|R2GFL0) RluA family pseudouridine synthase OS=E... 144 4e-32
R2FBP1_ENTFL (tr|R2FBP1) RluA family pseudouridine synthase OS=E... 144 4e-32
R2F6P9_ENTFL (tr|R2F6P9) RluA family pseudouridine synthase OS=E... 144 4e-32
R2ESM7_ENTFL (tr|R2ESM7) RluA family pseudouridine synthase OS=E... 144 4e-32
R2DIY1_ENTFL (tr|R2DIY1) RluA family pseudouridine synthase OS=E... 144 4e-32
R2D6P0_ENTFL (tr|R2D6P0) RluA family pseudouridine synthase OS=E... 144 4e-32
R2CG99_ENTFL (tr|R2CG99) RluA family pseudouridine synthase OS=E... 144 4e-32
R1VKT6_ENTFL (tr|R1VKT6) RluA family pseudouridine synthase OS=E... 144 4e-32
R1V4D7_ENTFL (tr|R1V4D7) RluA family pseudouridine synthase OS=E... 144 4e-32
R1USP2_ENTFL (tr|R1USP2) RluA family pseudouridine synthase OS=E... 144 4e-32
R1UI11_ENTFL (tr|R1UI11) RluA family pseudouridine synthase OS=E... 144 4e-32
R1UGK5_ENTFL (tr|R1UGK5) RluA family pseudouridine synthase OS=E... 144 4e-32
R1U5Y2_ENTFL (tr|R1U5Y2) RluA family pseudouridine synthase OS=E... 144 4e-32
R1TU45_ENTFL (tr|R1TU45) RluA family pseudouridine synthase OS=E... 144 4e-32
R1TM64_ENTFL (tr|R1TM64) RluA family pseudouridine synthase OS=E... 144 4e-32
R1T9B5_ENTFL (tr|R1T9B5) RluA family pseudouridine synthase OS=E... 144 4e-32
R1SVM5_ENTFL (tr|R1SVM5) RluA family pseudouridine synthase OS=E... 144 4e-32
R1SED5_ENTFL (tr|R1SED5) RluA family pseudouridine synthase OS=E... 144 4e-32
R1S5E5_ENTFL (tr|R1S5E5) RluA family pseudouridine synthase OS=E... 144 4e-32
R1S1E9_ENTFL (tr|R1S1E9) RluA family pseudouridine synthase OS=E... 144 4e-32
R1RMS7_ENTFL (tr|R1RMS7) RluA family pseudouridine synthase OS=E... 144 4e-32
R1RDN2_ENTFL (tr|R1RDN2) RluA family pseudouridine synthase OS=E... 144 4e-32
R1QWM2_ENTFL (tr|R1QWM2) RluA family pseudouridine synthase OS=E... 144 4e-32
R1QPS8_ENTFL (tr|R1QPS8) RluA family pseudouridine synthase OS=E... 144 4e-32
R1QD35_ENTFL (tr|R1QD35) RluA family pseudouridine synthase OS=E... 144 4e-32
R1PZJ6_ENTFL (tr|R1PZJ6) RluA family pseudouridine synthase OS=E... 144 4e-32
>I1JSZ4_SOYBN (tr|I1JSZ4) Uncharacterized protein OS=Glycine max PE=3 SV=1
Length = 450
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 224/303 (73%), Positives = 247/303 (81%), Gaps = 12/303 (3%)
Query: 1 MILLHSSGYCRVSTPRAFKFQ--TPLSPSLLFSATNXXXXXXXXXXXXGFADNSDSGDGG 58
M+ HS G CRVS RAF+FQ T SPSL SAT+ DS G
Sbjct: 1 MLSFHSCGCCRVSASRAFQFQFQTAPSPSLFLSATSYKFRSATASAAS--GSAGDSDSDG 58
Query: 59 EPRANYAGVQLEEIVDNRIGSGKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNK 118
EP+ N++GV+LEE VD+RIGSGK RLD+WIS+RINGISRARVQSSIKSGLVHVNGRVV+K
Sbjct: 59 EPKLNFSGVRLEEAVDSRIGSGKLRLDNWISSRINGISRARVQSSIKSGLVHVNGRVVDK 118
Query: 119 VSFNVKSGDEIKCTIAELQSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGT 178
VSFNVKSGDEIKCTIAELQ+LRAVP++IPLDIVYEDEH+LVINKPAHMVVHPAPGNTSGT
Sbjct: 119 VSFNVKSGDEIKCTIAELQNLRAVPQNIPLDIVYEDEHVLVINKPAHMVVHPAPGNTSGT 178
Query: 179 LVNGILHHCNLPNAEFSNEDALAYTEDSDDELNSFFQ-ASSCEG-------SAASIRPGI 230
LVNGILHHCNLPN EFS ++AL+ TEDSDDE NS+ ASSCEG ++ SIRPGI
Sbjct: 179 LVNGILHHCNLPNVEFSKDEALSDTEDSDDEFNSYISLASSCEGLNSRLSVASNSIRPGI 238
Query: 231 VHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDP 290
VHRLDKGTSGLLVVAKDEHSH KLSEQFK RTIKR+YVSLT GVPTPVAGR+EV VGRD
Sbjct: 239 VHRLDKGTSGLLVVAKDEHSHMKLSEQFKQRTIKRLYVSLTAGVPTPVAGRVEVPVGRDT 298
Query: 291 NNR 293
NNR
Sbjct: 299 NNR 301
>I3SSL5_LOTJA (tr|I3SSL5) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
Length = 209
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 195/209 (93%), Positives = 196/209 (93%)
Query: 1 MILLHSSGYCRVSTPRAFKFQTPLSPSLLFSATNXXXXXXXXXXXXGFADNSDSGDGGEP 60
MILLHSSGYCRVSTPRAFKFQTPLSPSLLFSATN GFADNSDSGDGGEP
Sbjct: 1 MILLHSSGYCRVSTPRAFKFQTPLSPSLLFSATNSKSRSAIARASSGFADNSDSGDGGEP 60
Query: 61 RANYAGVQLEEIVDNRIGSGKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVS 120
RANYAGVQLEEIVDNRIGSGKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVS
Sbjct: 61 RANYAGVQLEEIVDNRIGSGKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVS 120
Query: 121 FNVKSGDEIKCTIAELQSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLV 180
FNVKSGDEIKCTIAELQSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNT GTLV
Sbjct: 121 FNVKSGDEIKCTIAELQSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTFGTLV 180
Query: 181 NGILHHCNLPNAEFSNEDALAYTEDSDDE 209
NGILHHCNLPNAEFSNEDALAYTEDSDD+
Sbjct: 181 NGILHHCNLPNAEFSNEDALAYTEDSDDD 209
>G7J5V2_MEDTR (tr|G7J5V2) RNA pseudourine synthase OS=Medicago truncatula
GN=MTR_3g114540 PE=3 SV=1
Length = 465
Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust.
Identities = 216/307 (70%), Positives = 236/307 (76%), Gaps = 20/307 (6%)
Query: 6 SSGYCRVSTPRA---FKFQTPLSPSLLFSATNXXXXXXXXXXXXGFADNSDSGDGGEPRA 62
S G+C VST F F+T SP N F+++S+S EP++
Sbjct: 7 SCGFCGVSTSTKAFQFHFRTSSSPFFFSPLNNFKLRSSIAKSFSTFSNDSNSSTE-EPKS 65
Query: 63 NYAGVQLEEIV-DNRIGSGKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNK--- 118
NYAGV LEEIV D I SGK RLDSWIS+RINGISRARVQSSIK+GLVHVNGRVV+K
Sbjct: 66 NYAGVLLEEIVHDGGIKSGKLRLDSWISSRINGISRARVQSSIKAGLVHVNGRVVDKLSI 125
Query: 119 ------VSFNVKSGDEIKCTIAELQSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAP 172
VSFNV++GDEIKCTIAELQ LRAVPE+IPLDIVYED+HLLVINKPAHMVVHPAP
Sbjct: 126 VVILEQVSFNVRAGDEIKCTIAELQQLRAVPENIPLDIVYEDDHLLVINKPAHMVVHPAP 185
Query: 173 GNTSGTLVNGILHHCNLPNAEFSNEDALAYTEDSDDELNSFFQASS------CEGSAASI 226
GNTSGTLVNGILHHCNLPN EFS E+AL+ TEDSDDELN F SS S ASI
Sbjct: 186 GNTSGTLVNGILHHCNLPNVEFSKEEALSDTEDSDDELNGFSSQSSSSVGLDSRLSMASI 245
Query: 227 RPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRTIKRVYVSLTIGVPTPVAGRIEVAV 286
RPGIVHRLDKGTSGLLVVAK+EHSH KLSEQFKLRTIKRVYVSLT GVPTPV+GR+EV V
Sbjct: 246 RPGIVHRLDKGTSGLLVVAKNEHSHMKLSEQFKLRTIKRVYVSLTAGVPTPVSGRVEVPV 305
Query: 287 GRDPNNR 293
GRDPNNR
Sbjct: 306 GRDPNNR 312
>B9GQ77_POPTR (tr|B9GQ77) Predicted protein OS=Populus trichocarpa
GN=POPTRDRAFT_642899 PE=3 SV=1
Length = 444
Score = 329 bits (844), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 178/291 (61%), Positives = 214/291 (73%), Gaps = 20/291 (6%)
Query: 3 LLHSSGYCRVSTPRAFKFQTPLSPSLLFSATNXXXXXXXXXXXXGFADNSDSGDGGEPRA 62
+L S R S P F Q P + LL ++ NS+ G R
Sbjct: 30 MLSISSVSRCSAPSFFLSQKPTASRLLTVHSSSTRE-----------PNSNQNPGQ--RI 76
Query: 63 NYAGVQLEEIVDNRIGSGKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFN 122
NY+GV+LEE VD++ SGK RLDSWIS+RI+GISRARVQSSIKSGLV VNG+V++KVS N
Sbjct: 77 NYSGVKLEESVDSK--SGKSRLDSWISSRISGISRARVQSSIKSGLVSVNGKVIDKVSHN 134
Query: 123 VKSGDEIKCTIAELQSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNG 182
VK+GD++ C I+ELQ LRA PE+IPLDIVYEDE++LV+NKPAHMVVHPAPGN +GTLVNG
Sbjct: 135 VKAGDKVNCVISELQPLRAEPENIPLDIVYEDENVLVVNKPAHMVVHPAPGNATGTLVNG 194
Query: 183 ILHHCNLPNAEFSNEDALAYTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLL 242
ILHHC+LP S+++ L+ ED D+ + +SS AAS+RPGIVHRLDKGTSGLL
Sbjct: 195 ILHHCSLPT--VSSQEVLSGAEDVSDDDDEGLCSSS---YAASVRPGIVHRLDKGTSGLL 249
Query: 243 VVAKDEHSHKKLSEQFKLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
VVAKDEHSH LSEQFKL TIKRVYVSLT GVP P+AGRI+V +GRD +NR
Sbjct: 250 VVAKDEHSHAHLSEQFKLHTIKRVYVSLTCGVPAPMAGRIDVPIGRDVSNR 300
>E0CQW6_VITVI (tr|E0CQW6) Putative uncharacterized protein OS=Vitis vinifera
GN=VIT_18s0001g00960 PE=3 SV=1
Length = 433
Score = 322 bits (825), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 166/234 (70%), Positives = 191/234 (81%), Gaps = 2/234 (0%)
Query: 61 RANYAGVQLEE-IVDNRIGSGKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKV 119
R NYAGV+LEE +VD SGK RLDSWIS+RI GISRARVQSSI+SGLV VN R+V+KV
Sbjct: 55 RTNYAGVRLEETVVDVNSDSGKLRLDSWISSRIIGISRARVQSSIRSGLVSVNDRIVDKV 114
Query: 120 SFNVKSGDEIKCTIAELQSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTL 179
S +++GD++ CTI+ELQ LRA PEDIPLDIVYEDEH+LV+NKPAHMVVHPAPGN SGTL
Sbjct: 115 SHVIRAGDKVNCTISELQPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNASGTL 174
Query: 180 VNGILHHCNLPNAEFSNEDALAYTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTS 239
VNGILHHC+LP N D+ + SDDE NSF +C +IRPGIVHRLDKGTS
Sbjct: 175 VNGILHHCSLPTVALPNRDS-EEDDISDDEFNSFAAGQNCGTCETNIRPGIVHRLDKGTS 233
Query: 240 GLLVVAKDEHSHKKLSEQFKLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
GLLVVAKDEHSH LSEQFKL +I RVY+SLT GVPTP++GR+E+ VGRDPNNR
Sbjct: 234 GLLVVAKDEHSHAHLSEQFKLHSIHRVYISLTSGVPTPLSGRVEIPVGRDPNNR 287
>K4BVS1_SOLLC (tr|K4BVS1) Uncharacterized protein OS=Solanum lycopersicum
GN=Solyc04g081920.2 PE=3 SV=1
Length = 431
Score = 318 bits (816), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 163/243 (67%), Positives = 196/243 (80%), Gaps = 15/243 (6%)
Query: 61 RANYAGVQLEEIVDNRIGSGKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVS 120
R+NY+GV+LEE VD++ +GK RLDSW+S+RI+G+SRARVQSSI+SGLV VNGRV +KVS
Sbjct: 52 RSNYSGVKLEETVDSK--TGKLRLDSWVSSRIDGVSRARVQSSIRSGLVSVNGRVTDKVS 109
Query: 121 FNVKSGDEIKCTIAELQSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLV 180
VK GD++ CTIA+L+ LRA PEDIPLDIVYEDEH+LV+NKPAHMVVHPAPGN +GTLV
Sbjct: 110 HMVKGGDKVDCTIADLKPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLV 169
Query: 181 NGILHHCNLPNAEFSNEDALAYTED-SDDELNSF-------FQASS--CEGSAASIRPGI 230
+GILHHC+LP F E+ L+ ED SDDELN F + SS CE +S+RPGI
Sbjct: 170 SGILHHCSLPTVSFPGEEVLSDGEDASDDELNIFSPNRSPNYDDSSVMCE---SSVRPGI 226
Query: 231 VHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDP 290
VHRLDKGTSGLLVVAK+EHS L+EQFK TIKRVYVS+T GVP VAGR+++ +GRD
Sbjct: 227 VHRLDKGTSGLLVVAKNEHSLADLAEQFKKHTIKRVYVSITCGVPASVAGRVDIPIGRDS 286
Query: 291 NNR 293
NNR
Sbjct: 287 NNR 289
>M1ALN6_SOLTU (tr|M1ALN6) Uncharacterized protein OS=Solanum tuberosum
GN=PGSC0003DMG400009884 PE=3 SV=1
Length = 431
Score = 314 bits (805), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 161/243 (66%), Positives = 195/243 (80%), Gaps = 15/243 (6%)
Query: 61 RANYAGVQLEEIVDNRIGSGKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVS 120
R+NY+GV+LEE VD + +GK RLDSW+S+RI+G+SRARVQSSI+SGLV VNGRV +KVS
Sbjct: 52 RSNYSGVKLEETVDGK--TGKLRLDSWVSSRIDGVSRARVQSSIRSGLVSVNGRVTDKVS 109
Query: 121 FNVKSGDEIKCTIAELQSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLV 180
VK GD++ CTIA+L+ LRA PEDIPLDIV+EDEH+LV+NKPAHMVVHPAPGN +GTLV
Sbjct: 110 HMVKGGDKVDCTIADLKPLRAEPEDIPLDIVFEDEHVLVVNKPAHMVVHPAPGNATGTLV 169
Query: 181 NGILHHCNLPNAEFSNEDALAYTED-SDDELNSF-------FQASS--CEGSAASIRPGI 230
+GILHHC+LP F E+ L+ ED SDDELN F + SS CE +S+RPGI
Sbjct: 170 SGILHHCSLPTISFLGEEVLSDAEDASDDELNVFSGNRSPNYDDSSVMCE---SSVRPGI 226
Query: 231 VHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDP 290
VHRLDKGTSGLLVVAK+E+S L+EQFK TIKRVYVS+T GVP VAGR+++ +GRD
Sbjct: 227 VHRLDKGTSGLLVVAKNENSLASLAEQFKKHTIKRVYVSITCGVPASVAGRVDIPIGRDS 286
Query: 291 NNR 293
NNR
Sbjct: 287 NNR 289
>K7KSL2_SOYBN (tr|K7KSL2) Uncharacterized protein (Fragment) OS=Glycine max PE=4
SV=1
Length = 280
Score = 311 bits (797), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 172/260 (66%), Positives = 193/260 (74%), Gaps = 42/260 (16%)
Query: 53 DSGDGGEPRANYAGVQLEEIVDNRIGSGKPRLDSWISTRINGISRARVQSSIKSGLVHVN 112
D+ GEP+ N++GV+LEE VD+RIGSGK RLD+WIS+RINGI RARVQSSIKSGLVHVN
Sbjct: 23 DTDSDGEPKLNFSGVRLEEAVDSRIGSGKLRLDNWISSRINGIRRARVQSSIKSGLVHVN 82
Query: 113 GRVVNKVSFNVKSGDEIKCTIAELQSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAP 172
GRVV+K +LRAV E+IPLDIVYEDEH+LVINKPAHMV+ P
Sbjct: 83 GRVVDK-------------------NLRAVTENIPLDIVYEDEHVLVINKPAHMVI---P 120
Query: 173 G----------NTSGTLVNGILHHCNLPNAEFSN-EDALAYTEDSDDELNSFFQ-ASSCE 220
NTSG LVNGILHHCNLPN EFS E+AL+ TEDSDDE NS+ AS CE
Sbjct: 121 NLTYSQFHYLVNTSGMLVNGILHHCNLPNVEFSKEEEALSDTEDSDDEFNSYRSLASFCE 180
Query: 221 G-------SAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRTIKRVYVSLTIG 273
G ++ SIR GIVHRLDKGTSG L VAKDEHSH KLSEQFK TIKR+YVSLT G
Sbjct: 181 GLNSRLSVASNSIRSGIVHRLDKGTSG-LPVAKDEHSHMKLSEQFKQHTIKRIYVSLTAG 239
Query: 274 VPTPVAGRIEVAVGRDPNNR 293
+PTPVAGR+EV VGRDPNNR
Sbjct: 240 LPTPVAGRVEVPVGRDPNNR 259
>R0IAL9_9BRAS (tr|R0IAL9) Uncharacterized protein OS=Capsella rubella
GN=CARUB_v10020321mg PE=4 SV=1
Length = 432
Score = 309 bits (791), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 157/234 (67%), Positives = 190/234 (81%), Gaps = 5/234 (2%)
Query: 60 PRANYAGVQLEEIVDNRIGSGKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKV 119
PR N AG+++EE VD+ GK RLDSWIS+RING+SRARVQSSI+ GLV VNGRVV+KV
Sbjct: 62 PRVNNAGLRIEETVDDL--KGKIRLDSWISSRINGVSRARVQSSIRLGLVTVNGRVVDKV 119
Query: 120 SFNVKSGDEIKCTIAELQSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTL 179
S NVK+GDE+ CTI+ELQ L+A EDIPLDIVYED+H+LV+NKPAHMVVHPAPGN +GTL
Sbjct: 120 SHNVKAGDEVNCTISELQPLKAEAEDIPLDIVYEDKHVLVVNKPAHMVVHPAPGNPTGTL 179
Query: 180 VNGILHHCNLPNAEFSNEDALAYTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTS 239
VNGILHHC+LP+ +S+ + ++S + +SS AAS+RPGIVHRLDKGT+
Sbjct: 180 VNGILHHCSLPSVAYSSPEDDDSDDESFSDGEEMTSSSS---YAASVRPGIVHRLDKGTT 236
Query: 240 GLLVVAKDEHSHKKLSEQFKLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
GLLVVAKDEHSH L+EQFKL TI+RVYVSLT GVP+P GRIE+ +GRD +NR
Sbjct: 237 GLLVVAKDEHSHAHLAEQFKLHTIERVYVSLTTGVPSPPQGRIEIPIGRDSSNR 290
>B9S051_RICCO (tr|B9S051) Ribosomal pseudouridine synthase, putative OS=Ricinus
communis GN=RCOM_1298450 PE=3 SV=1
Length = 399
Score = 308 bits (789), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 160/233 (68%), Positives = 186/233 (79%), Gaps = 7/233 (3%)
Query: 63 NYAGVQLEEIVDN-RIGSGKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSF 121
NY G++LEE V S K RLDSWIS+RI+GISRARVQSSIKSGLV VNGRVV+KVS
Sbjct: 52 NYGGIRLEETVQVVHAKSVKLRLDSWISSRISGISRARVQSSIKSGLVSVNGRVVDKVSH 111
Query: 122 NVKSGDEIKCTIAELQSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVN 181
NVK GD++ CTI+ELQ LRA PED+PLDIVYEDEHLLV+NKP HMVVHPAPGN +GTLVN
Sbjct: 112 NVKFGDKVTCTISELQPLRAEPEDMPLDIVYEDEHLLVVNKPPHMVVHPAPGNPTGTLVN 171
Query: 182 GILHHCNLPNAEFSNEDALAYTED-SDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSG 240
GILHHCNLP S+++ L+ ED SDD+ + S +SIRPGIVHRLDKGTSG
Sbjct: 172 GILHHCNLPTVAISSQEVLSDAEDRSDDD-----ERSYSSSCESSIRPGIVHRLDKGTSG 226
Query: 241 LLVVAKDEHSHKKLSEQFKLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
LLVVAKDEH+H LSEQFK TI+RVY+SLT GVP+ + GRI++ +GRD NNR
Sbjct: 227 LLVVAKDEHAHAHLSEQFKQHTIQRVYISLTSGVPSALTGRIDIPIGRDVNNR 279
>M4DH18_BRARP (tr|M4DH18) Uncharacterized protein OS=Brassica rapa subsp.
pekinensis GN=Bra015795 PE=3 SV=1
Length = 425
Score = 299 bits (765), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 153/238 (64%), Positives = 185/238 (77%), Gaps = 21/238 (8%)
Query: 61 RANYAGVQLEEIVDNRIGSGKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVS 120
R N AG++L+E V + GK RLDSWIS+R++G+SRARVQSSI+ GLV VNG V++KVS
Sbjct: 54 RVNNAGLKLDETVS--VSKGKIRLDSWISSRVDGVSRARVQSSIRQGLVSVNGHVIDKVS 111
Query: 121 FNVKSGDEIKCTIAELQSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLV 180
NVK+GDE+ CTI++LQ LRA PEDIPLDIVYED+H+LV+NKP HMVVHPAPGN +GTLV
Sbjct: 112 HNVKAGDEVHCTISKLQPLRAEPEDIPLDIVYEDQHVLVVNKPPHMVVHPAPGNPNGTLV 171
Query: 181 NGILHHCNLPN-AEFSNEDALAYTED----SDDELNSFFQASSCEGSAASIRPGIVHRLD 235
NGILHHC+LP A +SN++ +++ SDDE IRPGIVHRLD
Sbjct: 172 NGILHHCSLPCVATYSNQEDDDDSDEEETFSDDE--------------GMIRPGIVHRLD 217
Query: 236 KGTSGLLVVAKDEHSHKKLSEQFKLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
KGTSGLLVVAKDEHSH L+EQFKL TI+RVY+SLT GVP+P GRI+V +GRD NNR
Sbjct: 218 KGTSGLLVVAKDEHSHAHLAEQFKLHTIERVYISLTTGVPSPSQGRIDVPIGRDSNNR 275
>A5AHP5_VITVI (tr|A5AHP5) Putative uncharacterized protein OS=Vitis vinifera
GN=VITISV_034413 PE=4 SV=1
Length = 611
Score = 292 bits (747), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 159/263 (60%), Positives = 181/263 (68%), Gaps = 43/263 (16%)
Query: 61 RANYAGVQLEE-IVDNRIGSGKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNK- 118
R NYAGV+LEE +VD SGK RLDSWIS+RI GISRARVQSSI+SGLV VN R+V+K
Sbjct: 184 RTNYAGVRLEETVVDVNSDSGKLRLDSWISSRIIGISRARVQSSIRSGLVSVNDRIVDKA 243
Query: 119 --------------------------VSFNVKSGDEIKCTIAELQSLRAVPEDIPLDIVY 152
VS +++GD++ CTI+ELQ LRA PEDIPLDIVY
Sbjct: 244 MLVSRKFEVGEGKKIEEKDPITYSEQVSHVIRAGDKVNCTISELQPLRAEPEDIPLDIVY 303
Query: 153 EDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAYTEDS--DDEL 210
EDEH VVHPAPGN SGTLVNGILHHC+LP N D+ ED DDE
Sbjct: 304 EDEH----------VVHPAPGNASGTLVNGILHHCSLPTVALPNRDS---EEDDILDDEF 350
Query: 211 NSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRTIKRVYVSL 270
NSF +C +IRPGIVHRLDKGTSGLLVVAKDEHSH LSEQFKL +I RVY+SL
Sbjct: 351 NSFAAGQNCGTCETNIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHSIHRVYISL 410
Query: 271 TIGVPTPVAGRIEVAVGRDPNNR 293
T GVPTP++GR+E+ VGRDPNNR
Sbjct: 411 TSGVPTPLSGRVEIPVGRDPNNR 433
>J3MHP7_ORYBR (tr|J3MHP7) Uncharacterized protein OS=Oryza brachyantha
GN=OB06G35410 PE=3 SV=1
Length = 442
Score = 287 bits (735), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 148/243 (60%), Positives = 181/243 (74%), Gaps = 12/243 (4%)
Query: 61 RANYAGVQLEEIVDNRIGSGKPRLDSWISTRING--ISRARVQSSIKSGLVHVNGRVVNK 118
R + G +LEE V G G+ R+D+WIS+R+ G +SRARVQ+SI++GLV VNGR V+K
Sbjct: 51 RGGHGGTRLEEAVP--AGEGRSRIDAWISSRLGGGGVSRARVQASIRAGLVAVNGRPVSK 108
Query: 119 VSFNVKSGDEIKCTIAELQSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGT 178
VS VK GD + CT++ELQ LRA PEDIPLDIVYED+HLLV+NKPAHMVVHPAPGN +GT
Sbjct: 109 VSHMVKGGDMVSCTVSELQPLRAEPEDIPLDIVYEDQHLLVVNKPAHMVVHPAPGNANGT 168
Query: 179 LVNGILHHCNLPN----AEFSNEDALAYTEDSDDELNSFFQASSCEGSA----ASIRPGI 230
LVN ILHHC + A S +D + D D ++ Q ++ E S+ A +RPGI
Sbjct: 169 LVNAILHHCKISTFTCLARNSTDDECPDSSDDDIDVFHVDQFTTGEVSSEVREALVRPGI 228
Query: 231 VHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDP 290
VHRLDKGTSGLLVVAKDEHSH +L+EQFKL TI+RVY+SLT G P P +GRIEV + RDP
Sbjct: 229 VHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTIRRVYISLTCGAPNPNSGRIEVPIARDP 288
Query: 291 NNR 293
NNR
Sbjct: 289 NNR 291
>D7KT91_ARALL (tr|D7KT91) T4O12.25 OS=Arabidopsis lyrata subsp. lyrata
GN=ARALYDRAFT_339776 PE=4 SV=1
Length = 930
Score = 286 bits (732), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 153/236 (64%), Positives = 182/236 (77%), Gaps = 20/236 (8%)
Query: 60 PRANYAGVQLEEIVDNRIGSGKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKV 119
PR N AG+++EE VD GK RLDSWIS+R+NG+SRARVQSSI+ GLV VNGRVV+KV
Sbjct: 564 PRVNNAGLRIEETVDAL--KGKIRLDSWISSRVNGVSRARVQSSIRLGLVTVNGRVVDKV 621
Query: 120 SFNVKSGDEIKCTIAELQSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTL 179
S NVK+GDE+ CTI+ELQ L+A EDIPLDIVYED+H+LV+NKPAHMVVHPAPGN +GTL
Sbjct: 622 SHNVKAGDEVNCTISELQPLKAEAEDIPLDIVYEDKHVLVVNKPAHMVVHPAPGNPTGTL 681
Query: 180 VNGILHHCNLPNAEFSNEDALAYTEDSDDELNSFFQ--ASSCEGSAASIRPGIVHRLDKG 237
VNGILHHC+LP +SN A +DSD+E S + +S AAS+RPGIVHRLDKG
Sbjct: 682 VNGILHHCSLPCVSYSN----AEDDDSDEETFSDDEEMTTSSSSYAASVRPGIVHRLDKG 737
Query: 238 TSGLLVVAKDEHSHKKLSEQFKLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
T+GLLVVAKDEHSH L+EQFKL TI+RVY GRIE+ +GRD +NR
Sbjct: 738 TTGLLVVAKDEHSHAHLAEQFKLHTIERVY------------GRIEIPIGRDSSNR 781
>C5Z1X0_SORBI (tr|C5Z1X0) Putative uncharacterized protein Sb10g030300 OS=Sorghum
bicolor GN=Sb10g030300 PE=3 SV=1
Length = 441
Score = 283 bits (725), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 146/245 (59%), Positives = 182/245 (74%), Gaps = 16/245 (6%)
Query: 61 RANYAGVQLEEIVDNRIGSGKPRLDSWISTRING--ISRARVQSSIKSGLVHVNGRVVNK 118
+ + G++LEE V +G G+ R+D+WIS R+ G +SRARVQ+SI++GLV VNGR V+K
Sbjct: 54 KGGHGGMRLEEAVP--VGEGRSRIDAWISARLGGGGVSRARVQASIRAGLVAVNGRPVSK 111
Query: 119 VSFNVKSGDEIKCTIAELQSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGT 178
VS VK GD + CT++ELQ LRA EDIPLDIVYED+H+LV+NKPAHMVVHPAPGN +GT
Sbjct: 112 VSHTVKGGDLVSCTVSELQPLRAEAEDIPLDIVYEDDHVLVVNKPAHMVVHPAPGNANGT 171
Query: 179 LVNGILHHCNLPN----AEFSNEDALAYTEDSDDELNSF------FQASSCEGSAASIRP 228
LVN ILHHC + A S D + SDD+++ F + +S E A +RP
Sbjct: 172 LVNAILHHCKISTFTCLARSSTGDEC--LDSSDDDIDVFNVDQFATEDASSEVRNALVRP 229
Query: 229 GIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRTIKRVYVSLTIGVPTPVAGRIEVAVGR 288
GIVHRLDKGTSGLLVVAKDEHSH +L+EQFKL TI+RVY+SLT GVP P +GRIE ++ R
Sbjct: 230 GIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTIRRVYISLTCGVPNPNSGRIEASIAR 289
Query: 289 DPNNR 293
DPNNR
Sbjct: 290 DPNNR 294
>K7ULI5_MAIZE (tr|K7ULI5) Uncharacterized protein OS=Zea mays GN=ZEAMMB73_425131
PE=3 SV=1
Length = 312
Score = 281 bits (718), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 144/243 (59%), Positives = 173/243 (71%), Gaps = 12/243 (4%)
Query: 61 RANYAGVQLEEIVDNRIGSGKPRLDSWISTRING--ISRARVQSSIKSGLVHVNGRVVNK 118
+ + G +LEE V +G G+ R+D+WIS R+ G +SRARVQ+SI++GLV VNGR V+K
Sbjct: 51 KGGHGGTRLEEAVP--VGEGRSRVDAWISARLGGGGVSRARVQASIRAGLVAVNGRPVSK 108
Query: 119 VSFNVKSGDEIKCTIAELQSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGT 178
VS VK GD + CT++ELQ LRA EDIPLDIVYED+H+LV+NKPAHMVVHPAPGN GT
Sbjct: 109 VSHTVKGGDLVSCTVSELQPLRAEAEDIPLDIVYEDDHVLVVNKPAHMVVHPAPGNAKGT 168
Query: 179 LVNGILHHCNLPNAE-FSNEDALAYTEDSDDELNSFFQAS-------SCEGSAASIRPGI 230
LVN ILHHC + + A DS DE F S E A +RPGI
Sbjct: 169 LVNAILHHCKISTFTCLARSSAGDECPDSTDEDTDVFHVDQFAAEDVSSEVRNALVRPGI 228
Query: 231 VHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDP 290
VHRLDKGTSGLLVVAKDEHSH +L+EQFKL TI+RVY+SLT G P P +GRIE ++ RDP
Sbjct: 229 VHRLDKGTSGLLVVAKDEHSHARLAEQFKLHTIRRVYISLTCGAPNPNSGRIEASIARDP 288
Query: 291 NNR 293
NNR
Sbjct: 289 NNR 291
>K7VCT5_MAIZE (tr|K7VCT5) Uncharacterized protein OS=Zea mays GN=ZEAMMB73_425131
PE=3 SV=1
Length = 350
Score = 281 bits (718), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 144/243 (59%), Positives = 173/243 (71%), Gaps = 12/243 (4%)
Query: 61 RANYAGVQLEEIVDNRIGSGKPRLDSWISTRING--ISRARVQSSIKSGLVHVNGRVVNK 118
+ + G +LEE V +G G+ R+D+WIS R+ G +SRARVQ+SI++GLV VNGR V+K
Sbjct: 51 KGGHGGTRLEEAVP--VGEGRSRVDAWISARLGGGGVSRARVQASIRAGLVAVNGRPVSK 108
Query: 119 VSFNVKSGDEIKCTIAELQSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGT 178
VS VK GD + CT++ELQ LRA EDIPLDIVYED+H+LV+NKPAHMVVHPAPGN GT
Sbjct: 109 VSHTVKGGDLVSCTVSELQPLRAEAEDIPLDIVYEDDHVLVVNKPAHMVVHPAPGNAKGT 168
Query: 179 LVNGILHHCNLPNAE-FSNEDALAYTEDSDDELNSFFQAS-------SCEGSAASIRPGI 230
LVN ILHHC + + A DS DE F S E A +RPGI
Sbjct: 169 LVNAILHHCKISTFTCLARSSAGDECPDSTDEDTDVFHVDQFAAEDVSSEVRNALVRPGI 228
Query: 231 VHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDP 290
VHRLDKGTSGLLVVAKDEHSH +L+EQFKL TI+RVY+SLT G P P +GRIE ++ RDP
Sbjct: 229 VHRLDKGTSGLLVVAKDEHSHARLAEQFKLHTIRRVYISLTCGAPNPNSGRIEASIARDP 288
Query: 291 NNR 293
NNR
Sbjct: 289 NNR 291
>B4FNR9_MAIZE (tr|B4FNR9) RNA binding protein OS=Zea mays GN=ZEAMMB73_425131 PE=2
SV=1
Length = 419
Score = 281 bits (718), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 144/243 (59%), Positives = 173/243 (71%), Gaps = 12/243 (4%)
Query: 61 RANYAGVQLEEIVDNRIGSGKPRLDSWISTRING--ISRARVQSSIKSGLVHVNGRVVNK 118
+ + G +LEE V +G G+ R+D+WIS R+ G +SRARVQ+SI++GLV VNGR V+K
Sbjct: 51 KGGHGGTRLEEAVP--VGEGRSRVDAWISARLGGGGVSRARVQASIRAGLVAVNGRPVSK 108
Query: 119 VSFNVKSGDEIKCTIAELQSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGT 178
VS VK GD + CT++ELQ LRA EDIPLDIVYED+H+LV+NKPAHMVVHPAPGN GT
Sbjct: 109 VSHTVKGGDLVSCTVSELQPLRAEAEDIPLDIVYEDDHVLVVNKPAHMVVHPAPGNAKGT 168
Query: 179 LVNGILHHCNLPNAE-FSNEDALAYTEDSDDELNSFFQAS-------SCEGSAASIRPGI 230
LVN ILHHC + + A DS DE F S E A +RPGI
Sbjct: 169 LVNAILHHCKISTFTCLARSSAGDECPDSTDEDTDVFHVDQFAAEDVSSEVRNALVRPGI 228
Query: 231 VHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDP 290
VHRLDKGTSGLLVVAKDEHSH +L+EQFKL TI+RVY+SLT G P P +GRIE ++ RDP
Sbjct: 229 VHRLDKGTSGLLVVAKDEHSHARLAEQFKLHTIRRVYISLTCGAPNPNSGRIEASIARDP 288
Query: 291 NNR 293
NNR
Sbjct: 289 NNR 291
>B6TXP4_MAIZE (tr|B6TXP4) RNA binding protein OS=Zea mays PE=2 SV=1
Length = 439
Score = 280 bits (717), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 144/243 (59%), Positives = 173/243 (71%), Gaps = 12/243 (4%)
Query: 61 RANYAGVQLEEIVDNRIGSGKPRLDSWISTRING--ISRARVQSSIKSGLVHVNGRVVNK 118
+ + G +LEE V +G G+ R+D+WIS R+ G +SRARVQ+SI++GLV VNGR V+K
Sbjct: 51 KGGHGGTRLEEAVP--VGEGRSRVDAWISARLGGGGVSRARVQASIRAGLVAVNGRPVSK 108
Query: 119 VSFNVKSGDEIKCTIAELQSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGT 178
VS VK GD + CT++ELQ LRA EDIPLDIVYED+H+LV+NKPAHMVVHPAPGN GT
Sbjct: 109 VSHTVKGGDLVSCTVSELQPLRAEAEDIPLDIVYEDDHVLVVNKPAHMVVHPAPGNAKGT 168
Query: 179 LVNGILHHCNLPNAE-FSNEDALAYTEDSDDELNSFFQAS-------SCEGSAASIRPGI 230
LVN ILHHC + + A DS DE F S E A +RPGI
Sbjct: 169 LVNAILHHCKISTFTCLARSSAGDECPDSSDEDTDVFHVDQFAAEDVSSEVRNALVRPGI 228
Query: 231 VHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDP 290
VHRLDKGTSGLLVVAKDEHSH +L+EQFKL TI+RVY+SLT G P P +GRIE ++ RDP
Sbjct: 229 VHRLDKGTSGLLVVAKDEHSHARLAEQFKLHTIRRVYISLTCGAPNPNSGRIEASIARDP 288
Query: 291 NNR 293
NNR
Sbjct: 289 NNR 291
>I1GVB4_BRADI (tr|I1GVB4) Uncharacterized protein OS=Brachypodium distachyon
GN=BRADI1G30180 PE=3 SV=1
Length = 309
Score = 279 bits (713), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 148/242 (61%), Positives = 178/242 (73%), Gaps = 11/242 (4%)
Query: 61 RANYAGVQLEEIVDNRIGSGKPRLDSWISTRING--ISRARVQSSIKSGLVHVNGRVVNK 118
R +AG +LEE V G G+ R+D+WIS R+ G +SRARVQ+SI++GLV VNGR V+K
Sbjct: 49 RGGHAGTRLEEAVP--AGEGRSRVDAWISARLGGGGVSRARVQASIRAGLVAVNGRPVSK 106
Query: 119 VSFNVKSGDEIKCTIAELQSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGT 178
VS VK GD + CT++ELQ LRA EDIPLDIVYEDEHLLV+NKPAHMVVHPAPGN +GT
Sbjct: 107 VSQTVKGGDTVSCTVSELQPLRAEAEDIPLDIVYEDEHLLVVNKPAHMVVHPAPGNANGT 166
Query: 179 LVNGILHHCNLPN----AEFSNEDALAYTEDSDDELNSFFQAS---SCEGSAASIRPGIV 231
LVN ILHHC + A S +D + D D ++ Q + S E A +RPGIV
Sbjct: 167 LVNAILHHCKISTFTCLARNSIDDECPESSDDDIDVFDVDQFNGEVSSEVRDAIVRPGIV 226
Query: 232 HRLDKGTSGLLVVAKDEHSHKKLSEQFKLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDPN 291
HRLDKGTSGLLVVAKDEHSH +L+EQFKL TI+R+Y+SLT GVP P + RIEV + RDPN
Sbjct: 227 HRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTIRRIYISLTCGVPNPNSARIEVPISRDPN 286
Query: 292 NR 293
NR
Sbjct: 287 NR 288
>B8B2J0_ORYSI (tr|B8B2J0) Putative uncharacterized protein OS=Oryza sativa subsp.
indica GN=OsI_24484 PE=2 SV=1
Length = 445
Score = 278 bits (711), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 147/243 (60%), Positives = 180/243 (74%), Gaps = 12/243 (4%)
Query: 61 RANYAGVQLEEIVDNRIGSGKPRLDSWISTRING--ISRARVQSSIKSGLVHVNGRVVNK 118
R + G +LEE V G G+ R+D+WIS R+ G +SRAR+Q+SI++GLV VNGR V+K
Sbjct: 53 RGGHGGTRLEEAVP--AGEGRSRIDAWISARLGGGGVSRARIQASIRAGLVVVNGRPVSK 110
Query: 119 VSFNVKSGDEIKCTIAELQSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGT 178
VS VK GD + CT++ELQ LRA PEDIPLDIVYED+HLLV+NKPAHMVVHPAPGN +GT
Sbjct: 111 VSHMVKGGDIVSCTVSELQPLRAEPEDIPLDIVYEDDHLLVVNKPAHMVVHPAPGNANGT 170
Query: 179 LVNGILHHCNLPN----AEFSNEDALAYTEDSDDELNSFFQASSCEGSA----ASIRPGI 230
LVN ILHHC + A S +D + D D ++ Q ++ E S+ A +RPGI
Sbjct: 171 LVNAILHHCKISTFTCLARNSIDDECPDSSDDDIDVFDIDQFTTGEVSSEVREALVRPGI 230
Query: 231 VHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDP 290
VHRLDKGTSGLLVVAKDEHSH +L+EQFKL TI+RVY+SLT G P P +GRIEV + RDP
Sbjct: 231 VHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTIRRVYISLTCGAPNPNSGRIEVPIARDP 290
Query: 291 NNR 293
NNR
Sbjct: 291 NNR 293
>I1Q5B6_ORYGL (tr|I1Q5B6) Uncharacterized protein OS=Oryza glaberrima PE=3 SV=1
Length = 445
Score = 278 bits (711), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 147/243 (60%), Positives = 180/243 (74%), Gaps = 12/243 (4%)
Query: 61 RANYAGVQLEEIVDNRIGSGKPRLDSWISTRING--ISRARVQSSIKSGLVHVNGRVVNK 118
R + G +LEE V G G+ R+D+WIS R+ G +SRAR+Q+SI++GLV VNGR V+K
Sbjct: 53 RGGHGGTRLEEAVP--AGEGRSRIDAWISARLGGGGVSRARIQASIRAGLVVVNGRPVSK 110
Query: 119 VSFNVKSGDEIKCTIAELQSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGT 178
VS VK GD + CT++ELQ LRA PEDIPLDIVYED+HLLV+NKPAHMVVHPAPGN +GT
Sbjct: 111 VSHMVKGGDIVSCTVSELQPLRAEPEDIPLDIVYEDDHLLVVNKPAHMVVHPAPGNANGT 170
Query: 179 LVNGILHHCNLPN----AEFSNEDALAYTEDSDDELNSFFQASSCEGSA----ASIRPGI 230
LVN ILHHC + A S +D + D D ++ Q ++ E S+ A +RPGI
Sbjct: 171 LVNAILHHCKISTFTCLARNSIDDECPDSSDDDIDVFDVDQFTTGEVSSEVREALVRPGI 230
Query: 231 VHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDP 290
VHRLDKGTSGLLVVAKDEHSH +L+EQFKL TI+RVY+SLT G P P +GRIEV + RDP
Sbjct: 231 VHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTIRRVYISLTCGAPNPNSGRIEVPIARDP 290
Query: 291 NNR 293
NNR
Sbjct: 291 NNR 293
>M0RQ50_MUSAM (tr|M0RQ50) Uncharacterized protein OS=Musa acuminata subsp.
malaccensis PE=3 SV=1
Length = 399
Score = 272 bits (696), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 141/236 (59%), Positives = 168/236 (71%), Gaps = 32/236 (13%)
Query: 58 GEPRANYAGVQLEEIVDNRIGSGKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVN 117
GE R N+AGV+LEE V+ +G+ K R+DSWIS+RI G+SRAR+QSSI+SGLV VNGR VN
Sbjct: 53 GEIRVNHAGVRLEERVE--VGAEKTRIDSWISSRIRGVSRARIQSSIRSGLVAVNGRTVN 110
Query: 118 KVSFNVKSGDEIKCTIAELQSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSG 177
KVS +K GD + C I++L L+A PED+PLDIVYEDEH++V+NKPAHMVVHPAPGN +G
Sbjct: 111 KVSHIIKGGDMVSCMISKLLPLKAEPEDMPLDIVYEDEHVIVVNKPAHMVVHPAPGNANG 170
Query: 178 TLVNGILHHCNLPNAEFSNEDALAYTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKG 237
TLVN ILHH + N E A +RPGIVHRLDKG
Sbjct: 171 TLVNAILHHLGIENYE------------------------------ALVRPGIVHRLDKG 200
Query: 238 TSGLLVVAKDEHSHKKLSEQFKLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
TSGLLVVAKD+HSH L+EQFK TI RVY+SLT GVP P GRIE+ + RD NNR
Sbjct: 201 TSGLLVVAKDDHSHAHLAEQFKKHTIHRVYMSLTSGVPNPSYGRIEIPIARDSNNR 256
>K3Y0V8_SETIT (tr|K3Y0V8) Uncharacterized protein OS=Setaria italica
GN=Si007819m.g PE=3 SV=1
Length = 437
Score = 271 bits (693), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 145/238 (60%), Positives = 175/238 (73%), Gaps = 12/238 (5%)
Query: 66 GVQLEEIVDNRIGSGKPRLDSWISTRING--ISRARVQSSIKSGLVHVNGRVVNKVSFNV 123
G +LEE V G G+ R+D+WIS R+ G +SRARVQ+SI++GLV VNGR V+KVS V
Sbjct: 54 GTRLEEAVP--AGEGRSRVDAWISARLGGGGVSRARVQASIRAGLVAVNGRPVSKVSHMV 111
Query: 124 KSGDEIKCTIAELQSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGI 183
K GD + CT++ELQ LRA EDIPLDIVYED+H+LV+NKPAHMVVHPAPGN +GTLVN I
Sbjct: 112 KGGDLVSCTVSELQPLRAEAEDIPLDIVYEDDHVLVVNKPAHMVVHPAPGNANGTLVNAI 171
Query: 184 LHHCNLPN----AEFSNEDALAYTEDSDDELNSFFQAS----SCEGSAASIRPGIVHRLD 235
LHHC + A S D + D D ++ Q + S E A +RPGIVHRLD
Sbjct: 172 LHHCRISTFTCLARNSTGDECPDSSDDDVDVFDVDQFTTEDVSSEVRNALVRPGIVHRLD 231
Query: 236 KGTSGLLVVAKDEHSHKKLSEQFKLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
KGTSGLLVVAKDEHSH +L+EQFKL TI+RVY+SLT GVP P +GRIE ++ RDPNNR
Sbjct: 232 KGTSGLLVVAKDEHSHAQLAEQFKLHTIRRVYISLTCGVPHPNSGRIEASIARDPNNR 289
>Q8SB33_ORYSA (tr|Q8SB33) Putative ribosomal large subunit pseudouridine synthase
OS=Oryza sativa GN=OJ1540_H01.12 PE=3 SV=1
Length = 275
Score = 270 bits (689), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 139/235 (59%), Positives = 168/235 (71%), Gaps = 34/235 (14%)
Query: 61 RANYAGVQLEEIVDNRIGSGKPRLDSWISTRING--ISRARVQSSIKSGLVHVNGRVVNK 118
R + G +LEE V G G+ R+D+WIS R+ G +SRAR+Q+SI++GLV VNGR V+K
Sbjct: 53 RGGHGGTRLEEAVPA--GEGRSRIDAWISARLGGGGVSRARIQASIRAGLVVVNGRPVSK 110
Query: 119 VSFNVKSGDEIKCTIAELQSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGT 178
VS VK GD + CT+ ELQ LRA PEDIPLDIVYED+HLLV+NKPAHMVVHPAPGN +GT
Sbjct: 111 VSHMVKGGDIVSCTVLELQPLRAEPEDIPLDIVYEDDHLLVVNKPAHMVVHPAPGNANGT 170
Query: 179 LVNGILHHCNLPNAEFSNEDALAYTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGT 238
LVN ILHHC ++++F + +RPGIVHRLDKGT
Sbjct: 171 LVNAILHHC---------------------KISTF---------TSLVRPGIVHRLDKGT 200
Query: 239 SGLLVVAKDEHSHKKLSEQFKLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
SGLLVVAKDEHSH +L+EQFKL TI+RVY+SLT G P P +GRIEV + RDPNNR
Sbjct: 201 SGLLVVAKDEHSHAQLAEQFKLHTIRRVYISLTCGAPNPNSGRIEVPIARDPNNR 255
>M1ALN7_SOLTU (tr|M1ALN7) Uncharacterized protein OS=Solanum tuberosum
GN=PGSC0003DMG400009884 PE=3 SV=1
Length = 249
Score = 255 bits (652), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 132/196 (67%), Positives = 158/196 (80%), Gaps = 15/196 (7%)
Query: 61 RANYAGVQLEEIVDNRIGSGKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVS 120
R+NY+GV+LEE VD + +GK RLDSW+S+RI+G+SRARVQSSI+SGLV VNGRV +KVS
Sbjct: 52 RSNYSGVKLEETVDGK--TGKLRLDSWVSSRIDGVSRARVQSSIRSGLVSVNGRVTDKVS 109
Query: 121 FNVKSGDEIKCTIAELQSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLV 180
VK GD++ CTIA+L+ LRA PEDIPLDIV+EDEH+LV+NKPAHMVVHPAPGN +GTLV
Sbjct: 110 HMVKGGDKVDCTIADLKPLRAEPEDIPLDIVFEDEHVLVVNKPAHMVVHPAPGNATGTLV 169
Query: 181 NGILHHCNLPNAEFSNEDALAYTED-SDDELNSF-------FQASS--CEGSAASIRPGI 230
+GILHHC+LP F E+ L+ ED SDDELN F + SS CE +S+RPGI
Sbjct: 170 SGILHHCSLPTISFLGEEVLSDAEDASDDELNVFSGNRSPNYDDSSVMCE---SSVRPGI 226
Query: 231 VHRLDKGTSGLLVVAK 246
VHRLDKGTSGLLVVAK
Sbjct: 227 VHRLDKGTSGLLVVAK 242
>M0W6H9_HORVD (tr|M0W6H9) Uncharacterized protein (Fragment) OS=Hordeum vulgare
var. distichum PE=3 SV=1
Length = 236
Score = 255 bits (652), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 133/214 (62%), Positives = 153/214 (71%), Gaps = 19/214 (8%)
Query: 94 GISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAVPEDIPLDIVYE 153
G+SRARVQ+SI++GLV VNGR V+KVS VK GD++ CT++ELQ LRA EDIPLDIVYE
Sbjct: 2 GVSRARVQASIRAGLVAVNGRPVSKVSQTVKGGDKVSCTVSELQPLRAEAEDIPLDIVYE 61
Query: 154 DEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAYTEDSDDEL--- 210
DEHLLV+NKPAHMVVHPAPGN +GTLVN ILHHC + S LA DDE
Sbjct: 62 DEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKI-----STFTCLARNSIDDDECPES 116
Query: 211 -----------NSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFK 259
S E A +RPGIVHRLDKGTSGLLVVAKDEHSH +L+EQFK
Sbjct: 117 SDDDVDVFDVDQFTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFK 176
Query: 260 LRTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
L TI RVY+SLT G+P+P + RIEV + RDPNNR
Sbjct: 177 LHTINRVYISLTCGLPSPNSARIEVPISRDPNNR 210
>M0W6I0_HORVD (tr|M0W6I0) Uncharacterized protein (Fragment) OS=Hordeum vulgare
var. distichum PE=3 SV=1
Length = 229
Score = 253 bits (646), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 132/213 (61%), Positives = 152/213 (71%), Gaps = 19/213 (8%)
Query: 95 ISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAVPEDIPLDIVYED 154
+SRARVQ+SI++GLV VNGR V+KVS VK GD++ CT++ELQ LRA EDIPLDIVYED
Sbjct: 1 VSRARVQASIRAGLVAVNGRPVSKVSQTVKGGDKVSCTVSELQPLRAEAEDIPLDIVYED 60
Query: 155 EHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAYTEDSDDEL---- 210
EHLLV+NKPAHMVVHPAPGN +GTLVN ILHHC + S LA DDE
Sbjct: 61 EHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKI-----STFTCLARNSIDDDECPESS 115
Query: 211 ----------NSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKL 260
S E A +RPGIVHRLDKGTSGLLVVAKDEHSH +L+EQFKL
Sbjct: 116 DDDVDVFDVDQFTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKL 175
Query: 261 RTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
TI RVY+SLT G+P+P + RIEV + RDPNNR
Sbjct: 176 HTINRVYISLTCGLPSPNSARIEVPISRDPNNR 208
>M0W6I2_HORVD (tr|M0W6I2) Uncharacterized protein (Fragment) OS=Hordeum vulgare
var. distichum PE=3 SV=1
Length = 231
Score = 253 bits (646), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 132/213 (61%), Positives = 152/213 (71%), Gaps = 19/213 (8%)
Query: 95 ISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAVPEDIPLDIVYED 154
+SRARVQ+SI++GLV VNGR V+KVS VK GD++ CT++ELQ LRA EDIPLDIVYED
Sbjct: 1 VSRARVQASIRAGLVAVNGRPVSKVSQTVKGGDKVSCTVSELQPLRAEAEDIPLDIVYED 60
Query: 155 EHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAYTEDSDDEL---- 210
EHLLV+NKPAHMVVHPAPGN +GTLVN ILHHC + S LA DDE
Sbjct: 61 EHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKI-----STFTCLARNSIDDDECPESS 115
Query: 211 ----------NSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKL 260
S E A +RPGIVHRLDKGTSGLLVVAKDEHSH +L+EQFKL
Sbjct: 116 DDDVDVFDVDQFTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKL 175
Query: 261 RTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
TI RVY+SLT G+P+P + RIEV + RDPNNR
Sbjct: 176 HTINRVYISLTCGLPSPNSARIEVPISRDPNNR 208
>N1R4Q2_AEGTA (tr|N1R4Q2) RNA pseudourine synthase 2, chloroplastic OS=Aegilops
tauschii GN=F775_22091 PE=4 SV=1
Length = 383
Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 115/185 (62%), Positives = 135/185 (72%), Gaps = 10/185 (5%)
Query: 119 VSFNVKSGDEIKCTIAELQSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGT 178
VS VK GD++ CT++ELQ LRA EDIPLDIVYEDEHLLV+NKPAHMVVHPAPGN +GT
Sbjct: 12 VSHTVKGGDKVSCTVSELQPLRAEAEDIPLDIVYEDEHLLVVNKPAHMVVHPAPGNANGT 71
Query: 179 LVNGILHHCNL---------PNAEFSNEDALAYTEDSDDELNSFFQASSCEGSAASIRPG 229
LVN ILHHC + P + E + + D + + + SS E A +RPG
Sbjct: 72 LVNAILHHCKISTFTCLARSPIYDECPESSDDDVDVFDVDQFTIGEVSS-EVREAIVRPG 130
Query: 230 IVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRTIKRVYVSLTIGVPTPVAGRIEVAVGRD 289
IVHRLDKGTSGLLVVAKDEHSH +L+EQFKL TI RVY+SLT GVP+P + RIEV + RD
Sbjct: 131 IVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTISRVYISLTCGVPSPNSARIEVPISRD 190
Query: 290 PNNRT 294
PNNRT
Sbjct: 191 PNNRT 195
>M8A1R1_TRIUA (tr|M8A1R1) RNA pseudourine synthase 2, chloroplastic OS=Triticum
urartu GN=TRIUR3_00347 PE=4 SV=1
Length = 485
Score = 220 bits (561), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 114/184 (61%), Positives = 134/184 (72%), Gaps = 10/184 (5%)
Query: 119 VSFNVKSGDEIKCTIAELQSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGT 178
VS VK GD++ CT++ELQ LRA EDIPLDIVYEDEHLLV+NKPAHMVVHPAPGN +GT
Sbjct: 68 VSQTVKGGDKVSCTVSELQPLRAEAEDIPLDIVYEDEHLLVVNKPAHMVVHPAPGNANGT 127
Query: 179 LVNGILHHCNL---------PNAEFSNEDALAYTEDSDDELNSFFQASSCEGSAASIRPG 229
LVN ILHHC + P + E + + D + + + SS E A +RPG
Sbjct: 128 LVNAILHHCKISTFTCLARSPIYDECPESSDDDVDVFDVDQFTIGEVSS-EVREAIVRPG 186
Query: 230 IVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRTIKRVYVSLTIGVPTPVAGRIEVAVGRD 289
IVHRLDKGTSGLLVVAKDEHSH +L+EQFKL TI RVY+SLT GVP+P + RIEV + RD
Sbjct: 187 IVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTISRVYISLTCGVPSPNSARIEVPISRD 246
Query: 290 PNNR 293
PNNR
Sbjct: 247 PNNR 250
>D8S3A7_SELML (tr|D8S3A7) Putative uncharacterized protein OS=Selaginella
moellendorffii GN=SELMODRAFT_107344 PE=3 SV=1
Length = 421
Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 121/250 (48%), Positives = 146/250 (58%), Gaps = 26/250 (10%)
Query: 63 NYAGVQLEEIVDNRIGSGKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFN 122
Y G EE V RI D W+S ++ SRARVQ SI+ GL VNG+ + K SF
Sbjct: 36 EYHGTIPEETVSTRI-------DVWLSGQLPHTSRARVQDSIRKGLALVNGKTITKPSFP 88
Query: 123 VKSGDEIKCTIAELQSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNG 182
V GDE+ CT+ L A PE I LDIV+ED+H++V+NK A MVVHPAPG+ GTLVN
Sbjct: 89 VIGGDEVVCTLCGAAPLEATPERIQLDIVHEDDHVIVVNKAADMVVHPAPGHYGGTLVNA 148
Query: 183 ILHHCNLPNAEFS------------NEDALAYTEDSDDELNSF-------FQASSCEGSA 223
ILHHC LP E S + L+ D D E + S G
Sbjct: 149 ILHHCGLPAVEVSLPVMMDEESDDDEGEELSENGDQDYEKDEVEVHKARGETPSRFRGPR 208
Query: 224 ASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRTIKRVYVSLTIGVPTPVAGRIE 283
IRPGIVHRLDKGTSGL+VVAKDE S LSEQFK R ++R Y+SLT G P+ +GRIE
Sbjct: 209 PVIRPGIVHRLDKGTSGLIVVAKDEQSQLSLSEQFKSRKVRRTYLSLTCGTPSTTSGRIE 268
Query: 284 VAVGRDPNNR 293
+ RDP +R
Sbjct: 269 AEILRDPRDR 278
>D8S7Y5_SELML (tr|D8S7Y5) Putative uncharacterized protein (Fragment)
OS=Selaginella moellendorffii GN=SELMODRAFT_36043 PE=3
SV=1
Length = 229
Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 115/232 (49%), Positives = 137/232 (59%), Gaps = 30/232 (12%)
Query: 62 ANYAGVQLEEIVDNRIGSGKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSF 121
Y G EE V RI D W+S ++ SRARVQ SI+ GL VNG+ + K SF
Sbjct: 7 GEYHGTIPEETVSTRI-------DVWLSGQLPHTSRARVQDSIRKGLALVNGKTITKPSF 59
Query: 122 NVKSGDEIKCTIAELQSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVN 181
V GDE+ CT+ L A PE I LDIV+ED+H++V+NK A MVVHPAPG+ GTLVN
Sbjct: 60 PVIGGDEVVCTLCGAAPLEATPEKIQLDIVHEDDHVIVVNKAADMVVHPAPGHYGGTLVN 119
Query: 182 GILHHCNLPNAEFSNEDALAYTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGL 241
ILHHC LP S G IRPGIVHRLDKGTSGL
Sbjct: 120 AILHHCGLPAT-----------------------PSRFRGPRPVIRPGIVHRLDKGTSGL 156
Query: 242 LVVAKDEHSHKKLSEQFKLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
+VVAKDE S LSEQFK R ++R Y+SLT G P+ +GRIE + RDP +R
Sbjct: 157 IVVAKDEQSQLSLSEQFKSRKVRRTYLSLTCGTPSTTSGRIEAEILRDPRDR 208
>B9H5B8_POPTR (tr|B9H5B8) Predicted protein (Fragment) OS=Populus trichocarpa
GN=POPTRDRAFT_862377 PE=4 SV=1
Length = 192
Score = 209 bits (532), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 116/187 (62%), Positives = 139/187 (74%), Gaps = 8/187 (4%)
Query: 61 RANYAGVQLEEIVDNRIGSGKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKV- 119
R N V+LEE VD++ SGK RLDSWIS RI+GISRARVQS IKSG+V VNG++ KV
Sbjct: 5 RINDFCVKLEETVDSK--SGKLRLDSWISCRISGISRARVQSIIKSGIVSVNGKITYKVF 62
Query: 120 SFNVKSGDEIKCTIAELQSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTL 179
S NVK+GDE+ C I E + LR PE++PLDIVYEDE++LV+NKPA MVVHPAPGN +GTL
Sbjct: 63 SHNVKAGDEMDCIILEWKPLRVEPENLPLDIVYEDENVLVVNKPAQMVVHPAPGNATGTL 122
Query: 180 VNGILHHCNLPNAEFSNEDALAYTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTS 239
VNGILHH + SN++ L+ ED D+ + SS AS+RPGIVH LDKGTS
Sbjct: 123 VNGILHHS---SPTVSNQEVLSDAEDISDDGDGEGLCSS--SYVASVRPGIVHWLDKGTS 177
Query: 240 GLLVVAK 246
GLLVVAK
Sbjct: 178 GLLVVAK 184
>C1N564_MICPC (tr|C1N564) Predicted protein OS=Micromonas pusilla (strain
CCMP1545) GN=MICPUCDRAFT_36187 PE=3 SV=1
Length = 417
Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 103/217 (47%), Positives = 136/217 (62%), Gaps = 26/217 (11%)
Query: 83 RLDSWISTRI------NGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAEL 136
RLD++I+T GI+RARV +SIK+GLV VNG V K S V GD I+ +
Sbjct: 87 RLDAYIATHAPPSEGGGGITRARVVASIKAGLVDVNGVVARKASERVSPGDVIRVALKPT 146
Query: 137 QSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSN 196
A PEDIPLD+ YEDEH+LV+NKPA MVVHPAPG++SGTLVN +L C P ++
Sbjct: 147 PPTEAAPEDIPLDVKYEDEHVLVVNKPAGMVVHPAPGHSSGTLVNAVLFRCGCPAMRVAS 206
Query: 197 EDALAYTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSE 256
+ A++ +G A RPGIVHRLDKGTSGL+VVAK+E +H L E
Sbjct: 207 GN-----------------ANTADGVA---RPGIVHRLDKGTSGLIVVAKNEAAHASLCE 246
Query: 257 QFKLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
QF R ++R Y+++ +G P GR++ +GRDP +R
Sbjct: 247 QFATRVVRRRYLAICLGSPEQGEGRVDAPIGRDPRDR 283
>A8IAF7_CHLRE (tr|A8IAF7) RNA pseudouridine synthase (Fragment) OS=Chlamydomonas
reinhardtii GN=PUS3 PE=3 SV=1
Length = 338
Score = 193 bits (490), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 102/211 (48%), Positives = 137/211 (64%), Gaps = 18/211 (8%)
Query: 95 ISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAVPEDIPLDIVYED 154
+SRA+VQ+SI +GLV VNGR V+K +++GD + ++ ++A+PE IPLDI YED
Sbjct: 1 VSRAKVQASIAAGLVAVNGRPVSKAGQQLRAGDTVTASLLPPPPMQAIPEPIPLDIKYED 60
Query: 155 EHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAYTEDSDDELNSFF 214
EHLLVINKPA MVVH APG+ +GTLVN +LHHC+LP + LA TE DE
Sbjct: 61 EHLLVINKPAGMVVHVAPGHHTGTLVNALLHHCSLPALD------LAPTEPGGDEEEEES 114
Query: 215 QASSCEGSAAS------------IRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
+S +RPGIVHR+DKGTSGL+VVAK E + +L QFK RT
Sbjct: 115 AQLGSSRLLSSSSASSSSSGSRILRPGIVHRIDKGTSGLIVVAKTETALTRLQAQFKART 174
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
+ R+Y+S+T+G P+ +GR+E + RDP +R
Sbjct: 175 VDRLYLSMTVGCPSSRSGRVETNISRDPGDR 205
>K8EBP9_9CHLO (tr|K8EBP9) Pseudouridine synthase, RluA family OS=Bathycoccus
prasinos GN=Bathy02g00920 PE=3 SV=1
Length = 445
Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 104/230 (45%), Positives = 140/230 (60%), Gaps = 17/230 (7%)
Query: 81 KP-RLDSWIST--RINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQ 137
KP RLD++I+ R I+R V SI +G V VNG K ++ V+ GD I+ TI +
Sbjct: 79 KPSRLDAFIAENLREEKITRGAVARSIANGNVFVNGTKTMKKTYKVQRGDVIRLTIERAK 138
Query: 138 SLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNE 197
SL A PEDI LD++YEDE ++VINKPA MVVHPAPG++SGTLVN +L+HC P
Sbjct: 139 SLTAEPEDIKLDVIYEDEDVIVINKPAGMVVHPAPGHSSGTLVNALLYHCGCPALVVQEG 198
Query: 198 DALAYTEDSDDELNSFFQASSC--------------EGSAASIRPGIVHRLDKGTSGLLV 243
+ + D + N + E ++RPGIVHRLDKGTSGLLV
Sbjct: 199 RKIPKSLDFAEVQNEEEEDDDDDDDDDDEIMPYLGPEEEDTTVRPGIVHRLDKGTSGLLV 258
Query: 244 VAKDEHSHKKLSEQFKLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
AK+ +H+ L +QF R+++R+YV+L +G P P AG +E +GRDP NR
Sbjct: 259 CAKNGAAHQHLCDQFAARSVRRLYVALVLGHPNPSAGVVEEPIGRDPKNR 308
>I0Z189_9CHLO (tr|I0Z189) Pseudouridine synthase OS=Coccomyxa subellipsoidea
C-169 GN=COCSUDRAFT_65343 PE=3 SV=1
Length = 352
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 97/204 (47%), Positives = 129/204 (63%), Gaps = 10/204 (4%)
Query: 100 VQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAVPEDIPLDIVYEDEHLLV 159
+Q++I+ G V VN V +K ++ GD + C + L SL A PEDIPLD+VYED+HLLV
Sbjct: 13 LQAAIRDGFVRVNEGVPSKPGLALRPGDVVACRLPPLPSLEASPEDIPLDVVYEDDHLLV 72
Query: 160 INKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDA------LAYTEDSDDELNSF 213
INK A MV+HPAPGN +GTLV+ +LH LP+ S +D+ A +ED D+E
Sbjct: 73 INKAAGMVIHPAPGNYTGTLVSALLHRFGLPSVRLSADDSPGDELEAAESEDGDEERAVP 132
Query: 214 F----QASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRTIKRVYVS 269
+ S S IRPGIVHRLDKGT+GL+V AKDE + L+ QFK T++RVY +
Sbjct: 133 WALPETPMSVGQSGDVIRPGIVHRLDKGTTGLMVAAKDERTLTGLAAQFKAHTVQRVYHA 192
Query: 270 LTIGVPTPVAGRIEVAVGRDPNNR 293
+ +GVP G IE +GRD +R
Sbjct: 193 IVLGVPKEAEGVIETNIGRDIRDR 216
>Q016F9_OSTTA (tr|Q016F9) Ribosomal large subunit pseudouridine syn (ISS)
OS=Ostreococcus tauri GN=Ot06g04410 PE=3 SV=1
Length = 422
Score = 180 bits (457), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 105/237 (44%), Positives = 141/237 (59%), Gaps = 20/237 (8%)
Query: 74 DNRIGSGKPRLDSWISTRI--NGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKC 131
D+ + PRLD+++++ + SRARV +IK+ +V VNG+ K + VK GD ++
Sbjct: 59 DDCVDDTSPRLDAYVASSVVDASASRARVARAIKASMVKVNGKTERKPARGVKPGDIVEG 118
Query: 132 TIAELQSLRAVPE-DIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLP 190
+ + A+PE I LDIVYEDE +LV+ KPA MV HP+ G+ GTLVN +L HC+LP
Sbjct: 119 ELEGERRSEAIPEPSIELDIVYEDESVLVVCKPAGMVTHPSAGHARGTLVNAVLGHCDLP 178
Query: 191 -----NAEFSNE---------DALAYTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDK 236
SN D T +SD + S AS + A SIRPGIVHRLD+
Sbjct: 179 ELVVPTGRVSNRMNEDGDFDDDDGPSTSESDSDAES---ASDSDDDAGSIRPGIVHRLDR 235
Query: 237 GTSGLLVVAKDEHSHKKLSEQFKLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
GTSG++VVAKD +H L QF RT++R YV++ GVP GRIE VGRDP +R
Sbjct: 236 GTSGVMVVAKDASAHNSLCNQFASRTVRRRYVAILSGVPKTSKGRIEAPVGRDPKDR 292
>D8U860_VOLCA (tr|D8U860) RNA pseudouridine synthase mitochondrial (Fragment)
OS=Volvox carteri GN=pus3 PE=3 SV=1
Length = 343
Score = 180 bits (456), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 97/206 (47%), Positives = 136/206 (66%), Gaps = 1/206 (0%)
Query: 89 STRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAVPEDIPL 148
+ R +SRA++Q+SI +GLV VNG+ K S +K+GD + C + ++A+PE IPL
Sbjct: 1 AARTQDVSRAKIQASIAAGLVLVNGQPAAKASQQLKAGDCVVCRLQPPPPMQALPEAIPL 60
Query: 149 DIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAYTEDSD- 207
DI YED+H++V+NKP+ MVVH APG+ GTLVN +LHHC LP + + L +
Sbjct: 61 DIKYEDDHVIVVNKPSGMVVHVAPGHHHGTLVNALLHHCALPALDLDSSLDLDPDLGTGI 120
Query: 208 DELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRTIKRVY 267
+S ++S S++ +RPGIVHRLDKGTSGLLVVAK E + +L QFK RT+ R+Y
Sbjct: 121 GTSSSSSCSTSSLSSSSCLRPGIVHRLDKGTSGLLVVAKTEVALTRLQAQFKARTVDRLY 180
Query: 268 VSLTIGVPTPVAGRIEVAVGRDPNNR 293
S+T+G P GR+E + RDP +R
Sbjct: 181 DSITVGCPVQPNGRVETNICRDPRDR 206
>D5H8E1_SALRM (tr|D5H8E1) Pseudouridine synthase OS=Salinibacter ruber (strain
M8) GN=rluD PE=3 SV=1
Length = 379
Score = 180 bits (456), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 102/215 (47%), Positives = 137/215 (63%), Gaps = 6/215 (2%)
Query: 80 GKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSL 139
G PR+D +++ SR ++Q +IK G + VNG V K S+ V+ GDEI + +
Sbjct: 37 GGPRIDKYLTRFYPEASRTKIQRAIKKGHLKVNGADVKK-SYGVEPGDEIVFRLIRKPPM 95
Query: 140 RAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDA 199
+A PE IPLD+V+ED+ LLV+NKPA MVVHPAPG+ SGTLV+ +LHH + E + +D
Sbjct: 96 QAEPEAIPLDVVHEDDDLLVVNKPAGMVVHPAPGHRSGTLVHALLHHVD--GGEVAADDE 153
Query: 200 LAYTEDSDDELN-SFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQF 258
E S+DE+ S A +RPGIVHRLDKGTSGLLVVAK +H+ L+EQF
Sbjct: 154 R--DEVSEDEVGLSLVNALPQSPDHPVVRPGIVHRLDKGTSGLLVVAKRGRAHQPLAEQF 211
Query: 259 KLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
K T+ R Y ++ G P G IE A+GRDP++R
Sbjct: 212 KAHTVDRRYRAIVWGHFAPSDGTIEGAIGRDPHHR 246
>Q2S3B7_SALRD (tr|Q2S3B7) Pseudouridine synthase OS=Salinibacter ruber (strain
DSM 13855 / M31) GN=rluD PE=3 SV=1
Length = 349
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 101/216 (46%), Positives = 137/216 (63%), Gaps = 6/216 (2%)
Query: 79 SGKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQS 138
+G PR+D +++ SR ++Q +IK G + VNG V K S+ V+ GDEI +
Sbjct: 6 TGGPRIDKYLTRFYPEASRTKIQRAIKKGHLKVNGTDVKK-SYGVEPGDEIVFRLIRKPP 64
Query: 139 LRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNED 198
++A PE IPLD+V+E + LLV+NKPA MVVHPAPG+ SGTLV+ +LHH + E + +D
Sbjct: 65 MQAEPEAIPLDVVHEGDDLLVVNKPAGMVVHPAPGHRSGTLVHALLHHVD--GGEVAADD 122
Query: 199 ALAYTEDSDDELN-SFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQ 257
E S+DE+ S A +RPGIVHRLDKGTSGLLVVAK +H+ L+EQ
Sbjct: 123 --ERDEVSEDEVGLSLVNALPQSPDHPVVRPGIVHRLDKGTSGLLVVAKRGRAHQPLAEQ 180
Query: 258 FKLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
FK T+ R Y ++ G P G IE A+GRDP++R
Sbjct: 181 FKAHTVDRRYRAIVWGRFAPSDGTIEGAIGRDPHHR 216
>A1ATW9_PELPD (tr|A1ATW9) Pseudouridine synthase OS=Pelobacter propionicus
(strain DSM 2379) GN=Ppro_3196 PE=3 SV=1
Length = 315
Score = 169 bits (429), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 90/211 (42%), Positives = 128/211 (60%), Gaps = 30/211 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
RLD ++S+++ +R+ +Q I+SG + V+GR V + S +K G+ I + E + R +
Sbjct: 13 RLDLFLSSQLASETRSTIQRLIESGNIMVDGREV-RPSLKLKGGESISIQLPEPVAARPL 71
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
PE IPL+++YED L+VINKPA MVVHP PGN+SGTLVN +L HC
Sbjct: 72 PESIPLEVLYEDGDLIVINKPAGMVVHPGPGNSSGTLVNALLAHC--------------- 116
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
+ G +RPGIVHRLDKGTSG++VVAK++ SH+ LS QF + +
Sbjct: 117 --------------TDLSGIGGELRPGIVHRLDKGTSGVMVVAKNDRSHQALSAQFSVHS 162
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
IKR+Y +L G P +GR+E +GR P +R
Sbjct: 163 IKRIYQALVYGSPQQDSGRLEGQIGRHPTDR 193
>A4RT55_OSTLU (tr|A4RT55) Predicted protein (Fragment) OS=Ostreococcus
lucimarinus (strain CCE9901) GN=OSTLU_3606 PE=3 SV=1
Length = 332
Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 96/214 (44%), Positives = 135/214 (63%), Gaps = 6/214 (2%)
Query: 83 RLDSWISTRI--NGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLR 140
RLD++++ + SR RV ++IK+ +V +NG+ +K S +K GD I+ + ++
Sbjct: 2 RLDAYVAANVPDASASRGRVAAAIKARMVTLNGKTASKPSRALKPGDVIEGELERERASE 61
Query: 141 AVPED-IPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDA 199
A PE + LDIV+EDE +LV+NK A MV HP+ G+ SGTLVN +L HC+LP +
Sbjct: 62 AKPEPWVKLDIVHEDESVLVVNKAAGMVTHPSAGHESGTLVNAVLGHCDLPELVVPTGNQ 121
Query: 200 LAYTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFK 259
+D DDE + +G IRPGIVHRLDKGTSG++VVAKD +H L EQF
Sbjct: 122 ALSDDDEDDEDAVDEDEGARDGM---IRPGIVHRLDKGTSGVMVVAKDASAHNSLCEQFA 178
Query: 260 LRTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
R ++R YV++ GVP+P GRIE +GRDP +R
Sbjct: 179 ARVVRRKYVAILSGVPSPSKGRIEAPIGRDPRDR 212
>B7K9I8_CYAP7 (tr|B7K9I8) Pseudouridine synthase OS=Cyanothece sp. (strain PCC
7424) GN=PCC7424_1515 PE=3 SV=1
Length = 306
Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 86/217 (39%), Positives = 126/217 (58%), Gaps = 29/217 (13%)
Query: 77 IGSGKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAEL 136
+ GK RLD W++ ++ +SR+R+Q+ I+ G + +NG + VKSGD + I +
Sbjct: 7 VEQGKLRLDRWLAQKLPDLSRSRLQTLIEQGNLQLNGTICTDKKTLVKSGDRLHLLIPPV 66
Query: 137 QSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSN 196
+ L P+DIPLDI+YED+ L++INKPA +VVHP+PG+ GTLVN +L HC
Sbjct: 67 KPLDLQPQDIPLDILYEDDQLIIINKPAGLVVHPSPGHEQGTLVNALLSHC--------- 117
Query: 197 EDALAYTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSE 256
S+ G RPGIVHRLDK T+G LVVAK +++H L +
Sbjct: 118 --------------------SNLAGIGGVQRPGIVHRLDKDTTGALVVAKTDYAHHHLQQ 157
Query: 257 QFKLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
Q K +T +R Y+ + GVP +G+I +++GR P R
Sbjct: 158 QLKAKTARREYLGIVYGVPKTTSGKINLSIGRHPIER 194
>K2EW97_9BACT (tr|K2EW97) Pseudouridine synthase OS=uncultured bacterium
GN=ACD_16C00100G0076 PE=3 SV=1
Length = 326
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 90/211 (42%), Positives = 120/211 (56%), Gaps = 28/211 (13%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
RLD +++ + +SR R+Q I++G V +NG +N V+ VK G +I+ I + V
Sbjct: 23 RLDKFLAIKAQDLSRTRLQDLIQTGFVQINGVAMNDVALKVKEGQKIQINIPPVVEAAPV 82
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
P+ IPLDI YEDE L+V+NKPA +VVHPAPGN GTLVN +L+HC
Sbjct: 83 PQKIPLDIFYEDEDLIVLNKPAGLVVHPAPGNPEGTLVNALLNHC--------------- 127
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
S G RPGIVHRLDK TSGL+VVAK++ +H L+ Q R
Sbjct: 128 -------------GESLSGINGVKRPGIVHRLDKDTSGLMVVAKNDKTHHSLAYQLATRE 174
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
+ RVY +L G P G IE +GRDP++R
Sbjct: 175 MSRVYQALIWGTLIPHKGIIEGPIGRDPHHR 205
>G8AN44_AZOBR (tr|G8AN44) Pseudouridine synthase OS=Azospirillum brasilense Sp245
GN=rluD PE=3 SV=1
Length = 350
Score = 167 bits (422), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 94/216 (43%), Positives = 121/216 (56%), Gaps = 29/216 (13%)
Query: 79 SGKPRLDSWISTRINGISRARVQSSIKSGLVH-VNGRVVNKVSFNVKSGDEIKCTIAELQ 137
+G RLD +++ + G+SR+RVQ+ ++ G V GR V S VK G I E +
Sbjct: 36 AGGQRLDKALASGLPGLSRSRVQALLEKGCVQDGTGRTVTDPSMKVKPGQTFDVFIPEAE 95
Query: 138 SLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNE 197
+ +DIPLD+VYEDE +LVI+KPA MVVHPA GN GTLVN +L HC
Sbjct: 96 PAQPEAQDIPLDVVYEDEDVLVIDKPAGMVVHPAAGNPDGTLVNALLAHCG--------- 146
Query: 198 DALAYTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQ 257
S G RPGIVHRLDK TSGL+VVAK++ +H L+EQ
Sbjct: 147 -------------------DSLSGIGGVRRPGIVHRLDKDTSGLMVVAKNDRAHHALTEQ 187
Query: 258 FKLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
F RT+ R Y +L GVP+P GRIE +GR +R
Sbjct: 188 FSGRTLSRTYQALVWGVPSPREGRIEGNIGRSSTDR 223
>G2SJ35_RHOMR (tr|G2SJ35) Pseudouridine synthase OS=Rhodothermus marinus
SG0.5JP17-172 GN=Rhom172_1182 PE=3 SV=1
Length = 355
Score = 167 bits (422), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 104/227 (45%), Positives = 137/227 (60%), Gaps = 6/227 (2%)
Query: 67 VQLEEIVDNRIGSGKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSG 126
+QLE R G RLD++++ + SR ++Q I+ G V VNG VV K ++ V+ G
Sbjct: 8 IQLEVPPGYREGG---RLDAYLARFLAQASRTKIQRGIREGRVTVNGVVVQKPAYTVQPG 64
Query: 127 DEIKCTIAELQSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHH 186
D I I + VPE IPLDIVYED +L+V+NK A +VVHPA GN SGTLVN +L+H
Sbjct: 65 DVITLRILRPPPVEIVPEPIPLDIVYEDPYLIVVNKQAGLVVHPARGNRSGTLVNALLYH 124
Query: 187 CNLPNAEFSNEDALAYTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAK 246
F ED L ++ S E + RPGIVHRLDK T+GL+VVAK
Sbjct: 125 IGSGPVRFDEEDDLPEDDEIG---LSMVSTGPTEAKLEAPRPGIVHRLDKDTTGLIVVAK 181
Query: 247 DEHSHKKLSEQFKLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
D+ +H L+ QF+ RTI R Y+++ GVP P GRIE A+GRDP +R
Sbjct: 182 DDVTHTGLARQFEHRTIARTYLAIVWGVPDPPWGRIEAAIGRDPRDR 228
>F0S472_DESTD (tr|F0S472) Pseudouridine synthase OS=Desulfurobacterium
thermolithotrophum (strain DSM 11699 / BSA)
GN=Dester_1005 PE=3 SV=1
Length = 313
Score = 167 bits (422), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 97/225 (43%), Positives = 135/225 (60%), Gaps = 31/225 (13%)
Query: 69 LEEIVDNRIGSGKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDE 128
+ EIV + GK RLD +I++ I ISR++ ++ I+ G V +NGR+V K S+ VK G+
Sbjct: 1 MPEIVVDSEKKGK-RLDQFIAS-IADISRSQAKNLIEDGEVSINGRIVKKPSYKVKEGET 58
Query: 129 IKCTIAELQSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCN 188
+ I E L PE+IPLDIVYED+ ++VINKPA +VVHPAPG+ SGTLVN +L++C
Sbjct: 59 VSFEIPEPIPLDLQPENIPLDIVYEDKDVIVINKPAGLVVHPAPGHYSGTLVNALLYYCK 118
Query: 189 LPNAEFSNEDALAYTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDE 248
+G ++RPGIVHRLDK T+GLLVVAK++
Sbjct: 119 -----------------------------DFQGINGTLRPGIVHRLDKDTAGLLVVAKND 149
Query: 249 HSHKKLSEQFKLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
+ + L EQFK RT+ R Y +L +G+ RI V +GRD +R
Sbjct: 150 LAQQSLIEQFKRRTVGRFYRALVLGIFEKQHDRIVVPIGRDKFDR 194
>R5UZ36_9FIRM (tr|R5UZ36) Pseudouridine synthase OS=Ruminococcus sp. CAG:254
GN=BN566_01341 PE=4 SV=1
Length = 311
Score = 166 bits (421), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 93/212 (43%), Positives = 129/212 (60%), Gaps = 30/212 (14%)
Query: 83 RLDSWISTRIN-GISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRA 141
RLD W++ + ++R+ +Q+ ++ G V VNG V+K ++ ++SGD ++ I E SL
Sbjct: 15 RLDKWLAEQDTLDLTRSVIQTRMEQGDVTVNGAAVSK-NYKIRSGDVVQVVIPEPVSLEL 73
Query: 142 VPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALA 201
VPE IPLDIVYED+ LLV+NKP MVVHPAPGN +GTLV+ +L+HC
Sbjct: 74 VPEPIPLDIVYEDDDLLVVNKPKGMVVHPAPGNLTGTLVHALLYHCG------------- 120
Query: 202 YTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLR 261
D L+ G IRPGIVHR+DK TSGLL+VAK++H+H KLSEQ +
Sbjct: 121 ------DRLS---------GINGVIRPGIVHRIDKNTSGLLMVAKNDHAHLKLSEQIQAH 165
Query: 262 TIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
T R Y ++ IG + +G I +GR P +R
Sbjct: 166 TFTRAYQAIAIGRFSEKSGTIHAPIGRHPVDR 197
>R6DYF0_9FIRM (tr|R6DYF0) Pseudouridine synthase OS=Ruminococcus sp. CAG:563
GN=BN710_00735 PE=4 SV=1
Length = 306
Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 91/211 (43%), Positives = 124/211 (58%), Gaps = 29/211 (13%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
R+D +S + +R+ +Q I G V VNG+ V K SF V GDEI ++ EL+++ A
Sbjct: 16 RIDKTLSDLCSDFTRSHIQHIIDDGEVRVNGKTVPK-SFRVSIGDEISFSMPELKTIEAK 74
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
PE+IPLDIVYED+ LLV+NKP MVVHPA GN GTLVN +L+HC
Sbjct: 75 PENIPLDIVYEDDDLLVVNKPRGMVVHPAAGNYDGTLVNALLYHC--------------- 119
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
SS G IRPGIVHR+DK TSGLL+VAK++ +H+KL+ Q K +
Sbjct: 120 -------------GSSLSGINGVIRPGIVHRIDKNTSGLLIVAKNDFAHEKLAAQIKEHS 166
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
R Y ++ G ++G + +GR+PN+R
Sbjct: 167 FTRQYRAVVHGHFKELSGTVNAPIGRNPNDR 197
>R5XXL5_9FIRM (tr|R5XXL5) Pseudouridine synthase OS=Ruminococcus sp. CAG:488
GN=BN680_00398 PE=4 SV=1
Length = 306
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 90/211 (42%), Positives = 125/211 (59%), Gaps = 29/211 (13%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
R+D +S + +R+ +Q I G V VNG+ V+K SF V GDEI ++ EL+++ A
Sbjct: 16 RIDKTLSDLCSDFTRSHIQHIIDDGEVKVNGKPVSK-SFRVSIGDEISFSMPELKTIEAK 74
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
PE+IPLDI+YED+ LLV+NKP MVVHPA GN GTLVN +L+HC
Sbjct: 75 PENIPLDIIYEDDDLLVVNKPRGMVVHPAAGNYDGTLVNALLYHC--------------- 119
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
SS G IRPGIVHR+DK TSGLL+VAK++ +H+KL+ Q K +
Sbjct: 120 -------------GSSLSGINGVIRPGIVHRIDKNTSGLLIVAKNDFAHEKLAAQIKEHS 166
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
R Y ++ G ++G + +GR+PN+R
Sbjct: 167 FTRQYRAVVHGHFKEMSGTVNAPIGRNPNDR 197
>E0U8Z4_CYAP2 (tr|E0U8Z4) Pseudouridine synthase OS=Cyanothece sp. (strain PCC
7822) GN=Cyan7822_4215 PE=3 SV=1
Length = 305
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 85/218 (38%), Positives = 125/218 (57%), Gaps = 29/218 (13%)
Query: 76 RIGSGKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAE 135
++ GK RLD W++ +I +SR+R+Q+ I+ G + +NG++ V+ GD + I
Sbjct: 6 QVEQGKLRLDVWLAQKIPDLSRSRLQNLIEQGNLRLNGKICTDKKTKVQQGDLLYLFIPP 65
Query: 136 LQSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFS 195
++ L PE+IPLD++YEDE L++INKPA +VVHPAPG+ GTLVN +L HC
Sbjct: 66 VEPLNLQPEEIPLDVLYEDEQLIIINKPAGLVVHPAPGHEKGTLVNALLSHC-------- 117
Query: 196 NEDALAYTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLS 255
S+ G RPGIVHRLDK T+G LV+AK +++H+ L
Sbjct: 118 ---------------------SNLAGIGGVQRPGIVHRLDKDTTGALVIAKTDYAHQHLQ 156
Query: 256 EQFKLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
Q K +T +R Y+ + GVP +G I + +GR P R
Sbjct: 157 AQLKAKTARREYLGVVYGVPKTGSGTINLPIGRHPIER 194
>D0MJ49_RHOM4 (tr|D0MJ49) Pseudouridine synthase OS=Rhodothermus marinus (strain
ATCC 43812 / DSM 4252 / R-10) GN=Rmar_1621 PE=3 SV=1
Length = 355
Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 103/227 (45%), Positives = 137/227 (60%), Gaps = 6/227 (2%)
Query: 67 VQLEEIVDNRIGSGKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSG 126
+QLE R G RLD++++ + SR ++Q I+ G V VNG VV K ++ V+ G
Sbjct: 8 IQLEVPPGYREGG---RLDAYLARFLAQASRTKIQRGIREGRVTVNGVVVQKPAYTVQPG 64
Query: 127 DEIKCTIAELQSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHH 186
D I I + VPE IPLDIVYED +L+V+NK A +VVHPA GN SGTLVN +L++
Sbjct: 65 DVITLRILRPPPVEIVPEPIPLDIVYEDPYLIVVNKQAGLVVHPARGNRSGTLVNALLYY 124
Query: 187 CNLPNAEFSNEDALAYTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAK 246
F ED L ++ S E + RPGIVHRLDK T+GL+VVAK
Sbjct: 125 IGSGPVRFDEEDDLPEDDEIG---LSMVSTGPTEAKLEAPRPGIVHRLDKDTTGLIVVAK 181
Query: 247 DEHSHKKLSEQFKLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
D+ +H L+ QF+ RTI R Y+++ GVP P GRIE A+GRDP +R
Sbjct: 182 DDVTHTGLARQFEHRTIARTYLAIVWGVPDPPRGRIEAAIGRDPRDR 228
>C4L5V7_EXISA (tr|C4L5V7) Pseudouridine synthase OS=Exiguobacterium sp. (strain
ATCC BAA-1283 / AT1b) GN=EAT1b_2849 PE=3 SV=1
Length = 303
Score = 164 bits (414), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 92/217 (42%), Positives = 130/217 (59%), Gaps = 31/217 (14%)
Query: 77 IGSGKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAEL 136
+ K R+D W+S R SR++VQ IK+G + VNG V K ++ ++ GDE++ + E
Sbjct: 7 VADEKARIDKWVSDR-GEWSRSQVQEWIKTGALLVNGSAV-KANYKLQVGDEVEVNVPEA 64
Query: 137 QSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSN 196
L +PEDIPL+IV+EDE ++V+NK MVVHPA G+TSGTLVN +L+HC
Sbjct: 65 VELEVLPEDIPLEIVFEDEDVIVVNKARGMVVHPAAGHTSGTLVNALLYHC--------- 115
Query: 197 EDALAYTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSE 256
D+L+ G RPGIVHR+DK T+GLL+VAK++ +H+ L+
Sbjct: 116 -----------DDLS---------GINGVKRPGIVHRIDKDTTGLLMVAKNDLAHESLAS 155
Query: 257 QFKLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
Q K +TIKR Y++L G G IE +GRD N+R
Sbjct: 156 QLKDKTIKREYIALVHGELVHELGTIEAPIGRDTNDR 192
>K9T246_9CYAN (tr|K9T246) Pseudouridine synthase OS=Pleurocapsa sp. PCC 7327
GN=Ple7327_0672 PE=3 SV=1
Length = 309
Score = 164 bits (414), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 88/211 (41%), Positives = 123/211 (58%), Gaps = 29/211 (13%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
RLDS++S R+ +SR+R+Q I+ G V +NG++ V+ GD ++ TI Q L
Sbjct: 13 RLDSYLSQRLPELSRSRLQKLIEQGNVQLNGQICTAKKTAVREGDRLQITIPPTQPLDLQ 72
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
PE+IPLDI+YED++L++INKPA +VVHPAPG+ +GTLVN +L HC PN
Sbjct: 73 PEEIPLDILYEDDYLIIINKPADLVVHPAPGHENGTLVNALLSHC--PN----------- 119
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
G RPGIVHRLDK T+G LV+AK E +H+ L Q K +T
Sbjct: 120 ----------------LAGIGGVSRPGIVHRLDKDTTGALVIAKTEFAHQNLQAQLKAKT 163
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
+R Y+ + GVP +G I + +GR +R
Sbjct: 164 ARREYLGIVYGVPKTESGIINLPIGRHRVDR 194
>D3P6K6_AZOS1 (tr|D3P6K6) Pseudouridine synthase OS=Azospirillum sp. (strain
B510) GN=rluD PE=3 SV=1
Length = 363
Score = 163 bits (413), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 95/238 (39%), Positives = 127/238 (53%), Gaps = 31/238 (13%)
Query: 56 DGGEPRANYAGVQLEEIVDNRIGSGKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRV 115
DG P+ + A I D G RLD +S + +SR+RVQ+ ++ G V +GR
Sbjct: 30 DGPGPKTSPAETLTYRIPDTAAGQ---RLDKALSAGLPDLSRSRVQALLEQGCVRGDGRT 86
Query: 116 VNKVSFNVKSGDEIKCTIAELQSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNT 175
+ S VK G + + + +P+DIPLD+VYED +LV++KPA +VVHPA GN
Sbjct: 87 ITDPSQRVKYGQIFELRMPGSAAAEPLPQDIPLDVVYEDADVLVVDKPAGLVVHPAAGNP 146
Query: 176 SGTLVNGILHHCNLPNAEFSNEDALAYTEDSDDELNSFFQASSCEGSAASIRPGIVHRLD 235
GTLVN +L HC S G RPGIVHRLD
Sbjct: 147 DGTLVNALLAHCG----------------------------DSLSGIGGVRRPGIVHRLD 178
Query: 236 KGTSGLLVVAKDEHSHKKLSEQFKLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
K TSGL+VVAK++ +H LS+QF RT+ R Y++L GVP P GRIE +GR +R
Sbjct: 179 KDTSGLMVVAKNDRAHHGLSDQFSDRTLSRTYLALVWGVPNPTQGRIEGNIGRSSADR 236
>F1TEN0_9CLOT (tr|F1TEN0) Pseudouridine synthase OS=Clostridium papyrosolvens DSM
2782 GN=Cpap_1589 PE=3 SV=1
Length = 304
Score = 163 bits (413), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 92/211 (43%), Positives = 124/211 (58%), Gaps = 29/211 (13%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
R+DSW++ + SR+ +Q G + VN V K ++ VK GD IK ++ + + L
Sbjct: 14 RIDSWLAGNLEDYSRSYIQKLCLDGNIWVN-EVQAKSNYKVKPGDNIKVSVPDAEILDVE 72
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
PEDIPLDIVYED+H++VINKP MVVHPA GN SGTLVN ++ HC
Sbjct: 73 PEDIPLDIVYEDKHIIVINKPKGMVVHPAVGNYSGTLVNALMKHCG-------------- 118
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
DS ++N IRPGIVHR+DK TSGLLVVAK +H++LSE+ K
Sbjct: 119 --DSLSDINGV------------IRPGIVHRIDKDTSGLLVVAKSNIAHERLSEKLKTHD 164
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
IKR Y++L G+ +G+I+ +GR P R
Sbjct: 165 IKREYIALVDGIIYENSGKIDAPIGRHPVER 195
>B8I767_CLOCE (tr|B8I767) Pseudouridine synthase OS=Clostridium cellulolyticum
(strain ATCC 35319 / DSM 5812 / JCM 6584 / H10)
GN=Ccel_0610 PE=3 SV=1
Length = 304
Score = 163 bits (412), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 92/211 (43%), Positives = 124/211 (58%), Gaps = 29/211 (13%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
R+DSW++ + SR+ +Q G V NG V K ++ VK+ D IK + E + L
Sbjct: 14 RIDSWLAGNLEDYSRSYIQKLCLDGNVWANGIQV-KSNYRVKTDDNIKVNVPEAEILDVE 72
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
PEDIPLDIVYED+H++VINKP MVVHPA GN +GTLVN ++ HC
Sbjct: 73 PEDIPLDIVYEDKHIIVINKPKGMVVHPAVGNYTGTLVNALMKHCG-------------- 118
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
DS ++N IRPGIVHR+DK TSGLLVVAK +H++LSE+ K
Sbjct: 119 --DSLSDINGV------------IRPGIVHRIDKDTSGLLVVAKSNIAHERLSEKLKTHD 164
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
IKR Y++L G+ +G+I+ +GR+P R
Sbjct: 165 IKREYIALVDGIIYENSGKIDAPIGRNPVER 195
>E0E1U2_9FIRM (tr|E0E1U2) Pseudouridine synthase OS=Peptostreptococcus stomatis
DSM 17678 GN=HMPREF0634_1067 PE=3 SV=1
Length = 310
Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 94/215 (43%), Positives = 125/215 (58%), Gaps = 29/215 (13%)
Query: 79 SGKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQS 138
S RLD +I+ + ISR+ VQ IK GLV VN V K S+ ++ GD ++ + E +
Sbjct: 17 SAGKRLDVFIADQYQDISRSYVQKLIKDGLVLVNEEV-KKASYKLEEGDRMEIAMPEPEV 75
Query: 139 LRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNED 198
L + +DI LDIVYED+ LL++NKP MVVHPAPGN GTLVN I++HC
Sbjct: 76 LEVLAQDIDLDIVYEDDDLLIVNKPQGMVVHPAPGNPDGTLVNAIMYHCK---------- 125
Query: 199 ALAYTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQF 258
D+L+S IRPGIVHR+DK TSGLLVVAK+ SH+ L++QF
Sbjct: 126 ---------DKLSSI---------NGVIRPGIVHRIDKNTSGLLVVAKNNASHQGLADQF 167
Query: 259 KLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
KL +I R Y + IG I+ +GR+P +R
Sbjct: 168 KLHSITREYEMVCIGGVNWDQMTIDKNIGRNPKDR 202
>R6CBH2_9FIRM (tr|R6CBH2) Pseudouridine synthase OS=Ruminococcus sp. CAG:579
GN=BN718_02031 PE=4 SV=1
Length = 303
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 88/211 (41%), Positives = 127/211 (60%), Gaps = 29/211 (13%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
R+D W++ ++ +SR+R+++ I G V VNG+ +K S +K G++I+ I E Q L +
Sbjct: 18 RIDKWLAMQLPELSRSRIEALISGGGVVVNGKNPSK-SLKLKGGEQIELEIPEPQELEVL 76
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
P+DIP++IVYED+ LLV+NKP MVVHPAPGN GTLVN +L+HC
Sbjct: 77 PQDIPIEIVYEDDQLLVVNKPKGMVVHPAPGNPDGTLVNALLYHCK-------------- 122
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
+ SS G IRPGIVHR+DK TSGLL+VAK + +H+ L+EQ K +
Sbjct: 123 -----------GRLSSINGI---IRPGIVHRIDKMTSGLLMVAKTDAAHRCLAEQIKQHS 168
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
R Y+++ G +P +G I +GR +R
Sbjct: 169 FTREYMAVVCGAFSPESGTISAPIGRSKYDR 199
>R5FRZ8_9FIRM (tr|R5FRZ8) Pseudouridine synthase OS=Coprobacillus sp. CAG:698
GN=BN756_00907 PE=4 SV=1
Length = 304
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 92/211 (43%), Positives = 122/211 (57%), Gaps = 30/211 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
RLD +++ I +SR ++Q IKSGLV +NG +++K S V GDE+K TI S V
Sbjct: 16 RLDKFLANEIEYLSRTQIQEIIKSGLVTING-LISKTSSLVNVGDEVKMTIPAPVSTDVV 74
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
EDIPLDI YED ++V+NKP+ MVVHPA GN SGTLVN +++HC
Sbjct: 75 AEDIPLDIYYEDSDVIVVNKPSGMVVHPAFGNYSGTLVNALMYHC--------------- 119
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
A IR GIVHR+DK TSGLLV K++ +HK LS+QF +T
Sbjct: 120 --------------KDLSAIAGVIRAGIVHRIDKDTSGLLVACKNDTAHKNLSDQFFNKT 165
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
+KR Y ++ GV G+I+ +GRD NR
Sbjct: 166 VKRKYYAICYGVIDHNYGKIDAPLGRDVLNR 196
>H2JIX0_9CLOT (tr|H2JIX0) Pseudouridine synthase OS=Clostridium sp. BNL1100
GN=Clo1100_1673 PE=3 SV=1
Length = 304
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 91/211 (43%), Positives = 123/211 (58%), Gaps = 29/211 (13%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
R+DSW++ + SR+ +Q G + VN V K ++ VK GD IK + + + L
Sbjct: 14 RIDSWLAVNLEDYSRSYIQKLCLDGNIWVN-EVQVKSNYKVKPGDSIKVNVPDAEILDVE 72
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
PEDIPLDIVYED+H++VINKP MVVHPA GN +GTLVN ++ HC
Sbjct: 73 PEDIPLDIVYEDKHIIVINKPKGMVVHPAVGNYTGTLVNALMKHCG-------------- 118
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
DS ++N IRPGIVHR+DK TSGLLVVAK +H++LSE+ K
Sbjct: 119 --DSLSDINGV------------IRPGIVHRIDKDTSGLLVVAKSNIAHERLSEKLKTHD 164
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
IKR Y++L G+ +G+I+ +GR P R
Sbjct: 165 IKREYIALVDGIIYENSGKIDAPIGRHPVER 195
>G7ZFR5_AZOL4 (tr|G7ZFR5) Pseudouridine synthase OS=Azospirillum lipoferum
(strain 4B) GN=rluD PE=3 SV=1
Length = 353
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 87/211 (41%), Positives = 118/211 (55%), Gaps = 28/211 (13%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
RLD ++ + +SR+RVQ+ ++ G V +GR + S VK G + + ++ V
Sbjct: 44 RLDKALAAGLPDLSRSRVQALLEQGCVRGDGRTITDPSLRVKPGQTFEVEVPGAEAAEPV 103
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
+DIP+D+V+ED +LVI+KPA +VVHPA GN GTLVN +L HC
Sbjct: 104 AQDIPIDVVFEDADVLVIDKPAGLVVHPAAGNPDGTLVNALLAHCG-------------- 149
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
S G RPGIVHRLDK TSGL+VVAK++ +H LSEQF RT
Sbjct: 150 --------------DSLSGIGGVKRPGIVHRLDKDTSGLMVVAKNDRAHHGLSEQFSDRT 195
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
+ R Y++L GVP P GRIE +GR +R
Sbjct: 196 LSRTYLALVWGVPNPTQGRIEGNIGRSSADR 226
>R7M9F0_9CLOT (tr|R7M9F0) Pseudouridine synthase OS=Clostridium sp. CAG:567
GN=BN712_00146 PE=4 SV=1
Length = 299
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 85/213 (39%), Positives = 122/213 (57%), Gaps = 29/213 (13%)
Query: 81 KPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLR 140
K RLD +IS + + ISR +Q I G + VNG+ K S+ V++GD+I I E++ +
Sbjct: 9 KDRLDKYISNKTDEISRVMIQKLIDEGEILVNGKS-QKASYKVQNGDKISINIPEVKEVG 67
Query: 141 AVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDAL 200
+DIPLDI+YED +LV+NKP MVVHPA GN GTLVN ++ HC
Sbjct: 68 LKSQDIPLDIIYEDNDILVVNKPKGMVVHPAVGNLDGTLVNAVMAHCK------------ 115
Query: 201 AYTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKL 260
+ G +RPGIVHRLDK TSGL++VAK++ +H KLSEQ +
Sbjct: 116 ----------------DNLSGIGGEVRPGIVHRLDKDTSGLIIVAKNDKAHIKLSEQIQN 159
Query: 261 RTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
R +K++Y++L G+ I++ +GR +R
Sbjct: 160 REVKKIYIALVRGIVKENEATIDMPIGRSSKDR 192
>B2J484_NOSP7 (tr|B2J484) Pseudouridine synthase, RluA family OS=Nostoc
punctiforme (strain ATCC 29133 / PCC 73102)
GN=Npun_R3812 PE=4 SV=1
Length = 345
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 87/212 (41%), Positives = 118/212 (55%), Gaps = 31/212 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
R+D ++S + +SR+R+Q I+ G V +N +V NVK GD I I E Q L +
Sbjct: 50 RIDRFLSQELPDLSRSRIQQLIEQGNVQLNDKVCTSKKINVKLGDRITLEIPEAQPLELL 109
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHC-NLPNAEFSNEDALA 201
EDIPLDI+YED+ LL++NKPA +VVHPAPG+ GTLVN +L HC NLP
Sbjct: 110 AEDIPLDILYEDDQLLILNKPAGLVVHPAPGHPDGTLVNALLAHCPNLP----------- 158
Query: 202 YTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLR 261
G RPGIVHRLDK T+G + +AK E +H L Q K +
Sbjct: 159 -------------------GIGGVQRPGIVHRLDKDTTGAIAIAKTEVAHHHLQAQLKAK 199
Query: 262 TIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
T +R Y+ + G P +G I++ +GR P +R
Sbjct: 200 TARREYLGVVYGAPKVESGTIDLPIGRHPQDR 231
>K9XSW9_STAC7 (tr|K9XSW9) Pseudouridine synthase OS=Stanieria cyanosphaera
(strain ATCC 29371 / PCC 7437) GN=Sta7437_1606 PE=3 SV=1
Length = 314
Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 86/211 (40%), Positives = 124/211 (58%), Gaps = 29/211 (13%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
RLD W+S+++ +SR+R+Q I+ G VH+NG+V + GD ++ TI + L
Sbjct: 18 RLDRWLSSQLTDLSRSRLQKLIEEGNVHLNGQVCTSKKIKLSPGDCLEVTIPSPEPLNLQ 77
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
EDIPLDI+YEDE L++INKPA +VVHPAPG+ +GTLV+ +L HC D LA
Sbjct: 78 AEDIPLDILYEDEDLIIINKPADLVVHPAPGHETGTLVHALLSHC----------DNLA- 126
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
G RPGIVHRLDK T+G +V+AK++++H+ L Q K +T
Sbjct: 127 ------------------GIGGIKRPGIVHRLDKDTTGAIVIAKNDYAHQHLQAQIKAKT 168
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
+R Y + G + + G+I++ VGR P R
Sbjct: 169 ARREYWGIVYGSYSDLEGKIDLPVGRHPVER 199
>B4WRY1_9SYNE (tr|B4WRY1) Pseudouridine synthase OS=Synechococcus sp. PCC 7335
GN=S7335_3812 PE=3 SV=1
Length = 309
Score = 160 bits (406), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 87/222 (39%), Positives = 120/222 (54%), Gaps = 29/222 (13%)
Query: 73 VDNRIGSGKP-RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKC 131
++ + +G P RLD W++ + SR RVQ I+ G V VNG V ++ V +GD I
Sbjct: 3 IERTVEAGAPERLDRWLADNVEAFSRNRVQQLIEQGAVSVNGEVCDRKKELVTAGDYIIL 62
Query: 132 TIAELQSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPN 191
++ E Q PEDIPLDI+YED+ LL++NKPA MVVHPAPG+ +GTLV+ +L +C
Sbjct: 63 SVPEAQPYELTPEDIPLDILYEDDQLLIVNKPAGMVVHPAPGHATGTLVHALLFYC---- 118
Query: 192 AEFSNEDALAYTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSH 251
G RPGIVHRLDK T+G +VVAK E +
Sbjct: 119 ------------------------GEQLTGVGGVQRPGIVHRLDKNTTGAMVVAKTETAL 154
Query: 252 KKLSEQFKLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
L +Q + +T KR Y+ + G P G I+ +GR P +R
Sbjct: 155 CNLQQQIQAKTAKREYLGIVNGAPKAEQGTIDQPIGRHPKHR 196
>A0L9J0_MAGSM (tr|A0L9J0) Pseudouridine synthase OS=Magnetococcus sp. (strain
MC-1) GN=Mmc1_2132 PE=3 SV=1
Length = 332
Score = 160 bits (406), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 90/212 (42%), Positives = 119/212 (56%), Gaps = 22/212 (10%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
RLD + ++R+ +Q IK V V+ V S V+ G I +E + A+
Sbjct: 22 RLDKALCCHFPDLTRSTLQRWIKEERVIVDHEVAKLPSQKVRVGQHIIIYPSEPEPSTAL 81
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
PE+I L+I++EDEHL+V+NKPA MVVHP G GTLVN +L+HC P+
Sbjct: 82 PEEIALEILFEDEHLIVLNKPAGMVVHPGAGVNHGTLVNALLYHCGTPDNPHGG------ 135
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
G IRPGIVHRLDK TSG++V AK +H+H LS QF+ RT
Sbjct: 136 ----------------LSGIGGVIRPGIVHRLDKETSGIMVAAKQDHAHIHLSRQFEQRT 179
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNRT 294
I R Y++LT G+P P GRIE A+GR P +RT
Sbjct: 180 IGRRYLALTRGIPQPAQGRIEGAIGRHPIHRT 211
>B8HL83_CYAP4 (tr|B8HL83) Pseudouridine synthase, RluA family OS=Cyanothece sp.
(strain PCC 7425 / ATCC 29141) GN=Cyan7425_4642 PE=4
SV=1
Length = 313
Score = 160 bits (405), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 85/216 (39%), Positives = 125/216 (57%), Gaps = 31/216 (14%)
Query: 79 SGKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQS 138
+G RLD +++ ++ +SR+R+Q I+ G V+VNG++ V+ GD I+ + +
Sbjct: 7 AGNERLDRYLAAQLPDLSRSRIQQLIEQGQVYVNGQLCQAKKQIVQVGDRIQLELPPPVA 66
Query: 139 LRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHC-NLPNAEFSNE 197
+PE IPLDI+YED+ LL++NKPA +VVHPAPG++ GTLVN +L HC +LP
Sbjct: 67 AEPLPEHIPLDILYEDDQLLIVNKPAGLVVHPAPGHSGGTLVNALLAHCGDLP------- 119
Query: 198 DALAYTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQ 257
G RPGIVHRLDK TSG + +AK E +H+ L Q
Sbjct: 120 -----------------------GIGGVQRPGIVHRLDKDTSGAIAIAKTELAHRHLQAQ 156
Query: 258 FKLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
K +T +R Y+ + GVP +GRI++ +GR P +R
Sbjct: 157 IKAKTARREYLGVVYGVPKTSSGRIDLPIGRHPVDR 192
>B7R5S1_9THEO (tr|B7R5S1) Pseudouridine synthase OS=Carboxydibrachium pacificum
DSM 12653 GN=CDSM653_13 PE=3 SV=1
Length = 309
Score = 160 bits (405), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 88/211 (41%), Positives = 126/211 (59%), Gaps = 31/211 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
R+D ++++ ++ SR+ ++ I+ GLV VNG+ V K S+ VK DEI I E + + V
Sbjct: 19 RIDVFLASELD-YSRSYIKKLIEEGLVLVNGKNV-KPSYKVKEDDEIVVNIKEAEKIEVV 76
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
PE+IPLDI+YEDE ++VINKP MVVHPA GN SGTLVN +L+HC
Sbjct: 77 PENIPLDILYEDEDIIVINKPQGMVVHPAAGNYSGTLVNALLYHC--------------- 121
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
+ G +RPGIVHRLDK TSG++VVAK++ +H LS Q K R+
Sbjct: 122 --------------KNLSGINGILRPGIVHRLDKDTSGVMVVAKNDKAHMSLSNQIKERS 167
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
+ + Y+++ GV G++E +GR P +R
Sbjct: 168 VLKKYIAIVEGVIKEEEGKVEAPIGRHPVDR 198
>H5S8P3_9CHLR (tr|H5S8P3) Pseudouridine synthase OS=uncultured Chloroflexi
bacterium GN=HGMM_F01E07C01 PE=3 SV=1
Length = 307
Score = 160 bits (405), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 85/211 (40%), Positives = 125/211 (59%), Gaps = 29/211 (13%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
RLD ++S ++ SR R+Q I+ G V VNG VV K + GD ++ + +
Sbjct: 16 RLDRFLSQQLTEFSRTRLQGLIEDGFVRVNGLVVTKNGHKLAFGDRVEVRVPPPAPSSLI 75
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
PE IP+++++E+E ++VINKPA +VVHPA G+ GTLV+ +LHH LP+
Sbjct: 76 PEAIPIEVLFENEDVVVINKPAGLVVHPAAGHDHGTLVHALLHH--LPD----------- 122
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
EG RPGIVHRLDKGTSGL++VA++E +H+ L +QF+LR
Sbjct: 123 ----------------LEGIGGEERPGIVHRLDKGTSGLMIVARNERAHRYLQDQFRLRR 166
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
+++ Y++L G P +GRIE +GRDP +R
Sbjct: 167 VEKTYLALVDGHPPTPSGRIEAPIGRDPLHR 197
>R5RK88_9CLOT (tr|R5RK88) Pseudouridine synthase OS=Clostridium sp. CAG:122
GN=BN479_00149 PE=4 SV=1
Length = 322
Score = 160 bits (404), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 86/227 (37%), Positives = 133/227 (58%), Gaps = 36/227 (15%)
Query: 67 VQLEEIVDNRIGSGKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSG 126
+Q+E DN RLD +++ + +SR+ +Q IK GLV VNG+ V K S+ ++SG
Sbjct: 24 IQVENEFDN------CRLDRFLTEKFKDMSRSFIQKQIKDGLVKVNGKAV-KSSYKLQSG 76
Query: 127 DEIKCTIAELQSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHH 186
D ++ +I E + + VPE+IPLDI+YED +++INKP MVVHPAPG+ SGT+VN +++H
Sbjct: 77 DNVQMSICEPKDIAIVPENIPLDIIYEDSDIILINKPKQMVVHPAPGHYSGTIVNALMYH 136
Query: 187 CNLPNAEFSNEDALAYTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAK 246
C D+L+ G +RPGIVHR+D+ T+G++V K
Sbjct: 137 C--------------------DDLS---------GINGELRPGIVHRIDQDTTGVIVACK 167
Query: 247 DEHSHKKLSEQFKLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
++ +H+ ++EQ K +I R Y ++ G G IE +GR P +R
Sbjct: 168 NDKAHRCIAEQLKEHSITRTYHAIVCGHLKQSEGTIEGDIGRHPVDR 214
>K9YCW9_HALP7 (tr|K9YCW9) Pseudouridine synthase OS=Halothece sp. (strain PCC
7418) GN=PCC7418_2072 PE=3 SV=1
Length = 309
Score = 160 bits (404), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 123/217 (56%), Gaps = 29/217 (13%)
Query: 77 IGSGKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAEL 136
I GK RLD ++ SR+R+Q I+ G V VN + +++GD + ++ L
Sbjct: 9 IAQGKQRLDRALAQAFPDFSRSRLQKLIEQGNVQVNEDICTNKKQGIEAGDRLILSVPPL 68
Query: 137 QSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSN 196
Q L PE IPLDI+YEDEHL+++NKPA +VVHPAPG+ SGTLVN +L HC
Sbjct: 69 QPLSVEPEAIPLDILYEDEHLIIVNKPAGLVVHPAPGHESGTLVNALLAHC--------- 119
Query: 197 EDALAYTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSE 256
D LA G RPGIVHRLDK T+G +VVAK++ +H+ L +
Sbjct: 120 -DHLA-------------------GIGGVERPGIVHRLDKDTTGAIVVAKNDFAHQHLQK 159
Query: 257 QFKLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
Q +++T KR Y+ L GVP V G I+ +GR +R
Sbjct: 160 QIQVKTAKREYLGLIYGVPKGVEGIIDRPIGRHRVDR 196
>Q9F461_NOSS1 (tr|Q9F461) Alr0522 protein OS=Nostoc sp. (strain PCC 7120 / UTEX
2576) GN=alr0522 PE=4 SV=1
Length = 312
Score = 159 bits (403), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 81/212 (38%), Positives = 121/212 (57%), Gaps = 31/212 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
R+D +++ + +SR+R+Q I+ G V VNG+V N+K GD I + E Q L
Sbjct: 15 RIDRYLAEELPDLSRSRIQQLIEQGKVQVNGKVCTSKKINLKVGDRITLEVPEAQPLEIQ 74
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHC-NLPNAEFSNEDALA 201
EDIPLDI+YED+ LL++NKPA +VVHPAPG++ GTLVN +L HC +LP
Sbjct: 75 AEDIPLDILYEDDQLLILNKPAGLVVHPAPGHSHGTLVNALLAHCPDLP----------- 123
Query: 202 YTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLR 261
G RPGIVHRLDK T+G + +AK + ++K + Q + +
Sbjct: 124 -------------------GIGGVQRPGIVHRLDKDTTGAIAIAKTDIAYKHIQAQLQAK 164
Query: 262 TIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
T +R Y+ + G P +G++++ +GR P +R
Sbjct: 165 TARREYLGVVYGAPKTASGKVDLPIGRHPQDR 196
>D5RX53_CLODI (tr|D5RX53) Pseudouridine synthase OS=Clostridium difficile NAP07
GN=rluD PE=3 SV=1
Length = 315
Score = 159 bits (403), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 91/211 (43%), Positives = 123/211 (58%), Gaps = 29/211 (13%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
RLD +++ ++ +SR+ +Q IK G V VN ++ K + VK D I I E + L V
Sbjct: 29 RLDIYLAEQLGDMSRSYIQKIIKDGKVKVNNKI-EKAKYLVKEEDNIVIEIPEPKVLEVV 87
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
P+DIP+DIVYED+ +L+INKP MVVHPAPGN TLVNGIL+HC
Sbjct: 88 PQDIPIDIVYEDDDVLIINKPQDMVVHPAPGNYENTLVNGILYHCK-------------- 133
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
D+L SS G IRPGIVHR+DK TSGLL++AK+ ++H L+EQ K T
Sbjct: 134 -----DKL------SSING---VIRPGIVHRIDKDTSGLLMIAKNNYAHNFLAEQLKEHT 179
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
I R Y + GV ++ +GR+P +R
Sbjct: 180 ITREYEFICYGVVKENKITVDKPIGRNPKDR 210
>D5Q249_CLODI (tr|D5Q249) Pseudouridine synthase OS=Clostridium difficile NAP08
GN=rluD PE=3 SV=1
Length = 315
Score = 159 bits (403), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 91/211 (43%), Positives = 123/211 (58%), Gaps = 29/211 (13%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
RLD +++ ++ +SR+ +Q IK G V VN ++ K + VK D I I E + L V
Sbjct: 29 RLDIYLAEQLGDMSRSYIQKIIKDGKVKVNNKI-EKAKYLVKEEDNIVIEIPEPKVLEVV 87
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
P+DIP+DIVYED+ +L+INKP MVVHPAPGN TLVNGIL+HC
Sbjct: 88 PQDIPIDIVYEDDDVLIINKPQDMVVHPAPGNYENTLVNGILYHCK-------------- 133
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
D+L SS G IRPGIVHR+DK TSGLL++AK+ ++H L+EQ K T
Sbjct: 134 -----DKL------SSING---VIRPGIVHRIDKDTSGLLMIAKNNYAHNFLAEQLKEHT 179
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
I R Y + GV ++ +GR+P +R
Sbjct: 180 ITREYEFICYGVVKENKITVDKPIGRNPKDR 210
>K9QG04_9NOSO (tr|K9QG04) Ribosomal large subunit pseudouridine synthase D
OS=Nostoc sp. PCC 7107 GN=Nos7107_3152 PE=4 SV=1
Length = 312
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 85/212 (40%), Positives = 118/212 (55%), Gaps = 31/212 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
RLD +++ + ISR+R+Q I+ G V VN +V NVK+GD I I E Q L
Sbjct: 15 RLDRYLAEELPDISRSRIQQFIEQGNVQVNDQVCTSKKVNVKAGDRITLQIPEAQPLELQ 74
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHC-NLPNAEFSNEDALA 201
EDIPLDI+YED+ LL++NKPA +VVHPAPG+ GTLVN +L HC NLP
Sbjct: 75 AEDIPLDILYEDDQLLILNKPAGLVVHPAPGHYDGTLVNALLAHCPNLP----------- 123
Query: 202 YTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLR 261
G RPGIVHRLDK T+G + + K + +++ L Q + +
Sbjct: 124 -------------------GIGGVQRPGIVHRLDKDTTGAIAIVKTDIAYQHLQAQLQAK 164
Query: 262 TIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
T +R Y+ + G P +G+I+ +GR P +R
Sbjct: 165 TAQREYLGVVYGAPKTQSGKIDFPIGRHPQDR 196
>K9SDW2_9CYAN (tr|K9SDW2) Pseudouridine synthase OS=Geitlerinema sp. PCC 7407
GN=GEI7407_3512 PE=3 SV=1
Length = 323
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 84/215 (39%), Positives = 123/215 (57%), Gaps = 29/215 (13%)
Query: 79 SGKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQS 138
S PRLDSW++ ++ +SR+R+Q I G V VNG V + +++GD I+ I +
Sbjct: 25 SSTPRLDSWLAEQVPDLSRSRIQKLIAQGQVSVNGAVCSSKKAVLQAGDRIEIVIPAPEP 84
Query: 139 LRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNED 198
L PE IPLDI+YED+ LL++NKPA MVVHPAPG++ GTLV+ +L HC+
Sbjct: 85 LDLQPEAIPLDILYEDDSLLILNKPAGMVVHPAPGHSEGTLVHALLAHCD---------- 134
Query: 199 ALAYTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQF 258
S G RPGIVHRLDK T+G LV+AK + +++ L Q
Sbjct: 135 -------------------SLAGIGGVQRPGIVHRLDKETTGALVIAKTDLAYQHLQAQI 175
Query: 259 KLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
+ +T +R Y+++ G P +G ++ +GR P +R
Sbjct: 176 QAKTARREYLAVVYGAPREESGTVDQPIGRHPVDR 210
>G6BND2_CLODI (tr|G6BND2) Pseudouridine synthase OS=Clostridium difficile
050-P50-2011 GN=HMPREF1123_03587 PE=3 SV=1
Length = 315
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 89/211 (42%), Positives = 122/211 (57%), Gaps = 29/211 (13%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
RLD +++ ++ +SR+ +Q IK G V VN +V K + VK D I I E + L +
Sbjct: 29 RLDIYLAEQLGDMSRSYIQKIIKDGKVKVNNKV-EKAKYLVKEEDNIVIEIPEPKVLEVL 87
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
P+DIP+DIVYED+ +L+INKP MVVHPAPGN TLVNGIL+HC
Sbjct: 88 PQDIPIDIVYEDDDVLIINKPQDMVVHPAPGNYENTLVNGILYHCK-------------- 133
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
D+L+S IRPGIVHR+DK TSGLL++AK+ ++H L+EQ K T
Sbjct: 134 -----DKLSSI---------NGVIRPGIVHRIDKDTSGLLMIAKNNYAHNFLAEQLKEHT 179
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
I R Y + GV ++ +GR+P +R
Sbjct: 180 ITREYEFICYGVVKEDKVTVDKPIGRNPKDR 210
>G6BDC0_CLODI (tr|G6BDC0) Pseudouridine synthase OS=Clostridium difficile
002-P50-2011 GN=HMPREF1122_03855 PE=3 SV=1
Length = 315
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 89/211 (42%), Positives = 122/211 (57%), Gaps = 29/211 (13%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
RLD +++ ++ +SR+ +Q IK G V VN +V K + VK D I I E + L +
Sbjct: 29 RLDIYLAEQLGDMSRSYIQKIIKDGKVKVNNKV-EKAKYLVKEEDNIVIEIPEPKVLEVL 87
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
P+DIP+DIVYED+ +L+INKP MVVHPAPGN TLVNGIL+HC
Sbjct: 88 PQDIPIDIVYEDDDVLIINKPQDMVVHPAPGNYENTLVNGILYHCK-------------- 133
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
D+L+S IRPGIVHR+DK TSGLL++AK+ ++H L+EQ K T
Sbjct: 134 -----DKLSSI---------NGVIRPGIVHRIDKDTSGLLMIAKNNYAHNFLAEQLKEHT 179
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
I R Y + GV ++ +GR+P +R
Sbjct: 180 ITREYEFICYGVVKEDKVTVDKPIGRNPKDR 210
>L0K8K9_HALHC (tr|L0K8K9) Pseudouridine synthase OS=Halobacteroides halobius
(strain ATCC 35273 / DSM 5150 / MD-1) GN=Halha_0909 PE=3
SV=1
Length = 305
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 88/227 (38%), Positives = 132/227 (58%), Gaps = 32/227 (14%)
Query: 69 LEEIVDNRIGS--GKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSG 126
+EE + RI + R+D +++ + + +SR +Q IKS V VNG+ + K S+ + +G
Sbjct: 1 MEEEKEFRISDKDNEQRIDKFLANKNDDLSRNYIQKLIKSNQVVVNGQRIKK-SYELVAG 59
Query: 127 DEIKCTIAELQSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHH 186
D +K I E + L P+DIPL+I+Y+D ++VINK +VVHPAPG+ SGTLVN +L+H
Sbjct: 60 DNVKLIIPEPKELDLEPQDIPLNILYDDNDIIVINKQPDLVVHPAPGHESGTLVNALLYH 119
Query: 187 CNLPNAEFSNEDALAYTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAK 246
C+ + G IRPGIVHRLDK TSG +VVAK
Sbjct: 120 CD-----------------------------NLSGINGVIRPGIVHRLDKDTSGAMVVAK 150
Query: 247 DEHSHKKLSEQFKLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
++ +H +L+ QFK R K++Y +L G G+++ A+GRDP +R
Sbjct: 151 NDEAHIELARQFKERETKKIYTTLVYGRVRYNKGQVDAAIGRDPYDR 197
>K9YU80_DACSA (tr|K9YU80) Pseudouridine synthase OS=Dactylococcopsis salina PCC
8305 GN=Dacsa_1824 PE=3 SV=1
Length = 310
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 119/216 (55%), Gaps = 29/216 (13%)
Query: 78 GSGKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQ 137
+GK RLD + SR+R+Q I+ G V VNG + V++ DEI I Q
Sbjct: 13 ATGKQRLDRALVEGFPDFSRSRLQKLIEQGNVQVNGIISKDKKQLVQAKDEIVLWIPPPQ 72
Query: 138 SLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNE 197
L PE IPLDI+YEDEHL+++NKPA +VVHPAPGN +GTLVN +L HC
Sbjct: 73 PLDVQPESIPLDILYEDEHLIIVNKPAGLVVHPAPGNETGTLVNALLAHC---------- 122
Query: 198 DALAYTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQ 257
+ G RPGIVHRLDK TSG +VVAK++ SH+ L +Q
Sbjct: 123 -------------------ENLAGIGGIERPGIVHRLDKDTSGAIVVAKNDFSHQHLQKQ 163
Query: 258 FKLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
+ +T KR Y+ L GVP G I++ +GR P +R
Sbjct: 164 IQDKTAKREYLGLVYGVPKGENGSIDLPIGRHPVDR 199
>C9YPG9_CLODR (tr|C9YPG9) Pseudouridine synthase OS=Clostridium difficile (strain
R20291) GN=CDR20291_2483 PE=3 SV=1
Length = 303
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 89/211 (42%), Positives = 122/211 (57%), Gaps = 29/211 (13%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
RLD +++ ++ +SR+ +Q IK G V VN +V K + VK D I I E + L +
Sbjct: 17 RLDIYLAEQLGDMSRSYIQKIIKDGKVKVNNKV-EKAKYLVKEEDNIVIEIPEPKVLEVL 75
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
P+DIP+DIVYED+ +L+INKP MVVHPAPGN TLVNGIL+HC
Sbjct: 76 PQDIPIDIVYEDDDVLIINKPQDMVVHPAPGNYENTLVNGILYHCK-------------- 121
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
D+L+S IRPGIVHR+DK TSGLL++AK+ ++H L+EQ K T
Sbjct: 122 -----DKLSSI---------NGVIRPGIVHRIDKDTSGLLMIAKNNYAHNFLAEQLKEHT 167
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
I R Y + GV ++ +GR+P +R
Sbjct: 168 ITREYEFICYGVVKEDKITVDKPIGRNPKDR 198
>C9XMW5_CLODC (tr|C9XMW5) Pseudouridine synthase OS=Clostridium difficile (strain
CD196) GN=CD196_2436 PE=3 SV=1
Length = 303
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 89/211 (42%), Positives = 122/211 (57%), Gaps = 29/211 (13%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
RLD +++ ++ +SR+ +Q IK G V VN +V K + VK D I I E + L +
Sbjct: 17 RLDIYLAEQLGDMSRSYIQKIIKDGKVKVNNKV-EKAKYLVKEEDNIVIEIPEPKVLEVL 75
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
P+DIP+DIVYED+ +L+INKP MVVHPAPGN TLVNGIL+HC
Sbjct: 76 PQDIPIDIVYEDDDVLIINKPQDMVVHPAPGNYENTLVNGILYHCK-------------- 121
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
D+L+S IRPGIVHR+DK TSGLL++AK+ ++H L+EQ K T
Sbjct: 122 -----DKLSSI---------NGVIRPGIVHRIDKDTSGLLMIAKNNYAHNFLAEQLKEHT 167
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
I R Y + GV ++ +GR+P +R
Sbjct: 168 ITREYEFICYGVVKEDKITVDKPIGRNPKDR 198
>R5SL10_9FIRM (tr|R5SL10) Pseudouridine synthase OS=Firmicutes bacterium CAG:129
GN=BN483_00131 PE=4 SV=1
Length = 303
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 80/211 (37%), Positives = 127/211 (60%), Gaps = 29/211 (13%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
RLD+++++ ++G++R++ I+SG V VNGR V+K S+ + G++I T+ E + + AV
Sbjct: 16 RLDAFLASSLDGLTRSQATRLIESGEVAVNGRAVSK-SYKLAGGEDIAVTLPEPEPVEAV 74
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
P+DIPLD+VYED ++V+NKP+ MVVHPAPG+ GTLVN +L+HC
Sbjct: 75 PQDIPLDVVYEDADVIVVNKPSGMVVHPAPGHPDGTLVNALLYHC--------------- 119
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
A + G ++RPGIVHR+D+ TSGL++ AK++ +H+ LS Q T
Sbjct: 120 -------------AGTLSGVGGALRPGIVHRIDRDTSGLIIAAKNDAAHQYLSAQLADHT 166
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
+ R Y + +G G ++ + R P +R
Sbjct: 167 LARTYECIVVGALREDRGTVDAPIARHPTDR 197
>G6BZR4_CLODI (tr|G6BZR4) Pseudouridine synthase OS=Clostridium difficile
70-100-2010 GN=HMPREF9945_03622 PE=3 SV=1
Length = 315
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 89/211 (42%), Positives = 122/211 (57%), Gaps = 29/211 (13%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
RLD +++ ++ +SR+ +Q IK G V VN +V K + VK D I I E + L +
Sbjct: 29 RLDIYLAEQLGDMSRSYIQKIIKDGKVKVNNKV-EKARYLVKEEDNIVIEIPEPKVLEVL 87
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
P+DIP+DIVYED+ +L+INKP MVVHPAPGN TLVNGIL+HC
Sbjct: 88 PQDIPIDIVYEDDDVLIINKPQDMVVHPAPGNYENTLVNGILYHCK-------------- 133
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
D+L+S IRPGIVHR+DK TSGLL++AK+ ++H L+EQ K T
Sbjct: 134 -----DKLSSI---------NGVIRPGIVHRIDKDTSGLLMIAKNNYAHNFLAEQLKEHT 179
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
I R Y + GV ++ +GR+P +R
Sbjct: 180 ITREYEFICYGVVKEDKITVDKPIGRNPKDR 210
>K2M6L9_9PROT (tr|K2M6L9) Pseudouridine synthase OS=Thalassospira profundimaris
WP0211 GN=TH2_12582 PE=3 SV=1
Length = 323
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 91/213 (42%), Positives = 119/213 (55%), Gaps = 30/213 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
RLD ++T SR+R+++ I+ G + VNG K+S VK+GD ++ E +
Sbjct: 17 RLDKVLATAWPNQSRSRIKALIEDGQLCVNGTPATKMSAKVKAGDVFDLSVPEPEMAEPT 76
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
PEDI LD+++EDE LLVINKPA MVVHPA GN SGTLVN +L HC
Sbjct: 77 PEDIKLDVLFEDEDLLVINKPAGMVVHPAAGNESGTLVNALLAHC--------------- 121
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFK--L 260
S G RPGIVHRLDK TSG +VVAK++ +H+ LS F
Sbjct: 122 -------------GDSLSGIGGVKRPGIVHRLDKDTSGAMVVAKNDAAHRALSNLFAEDK 168
Query: 261 RTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
I+R Y+++ GVP P +G IE +GR P NR
Sbjct: 169 ENIERAYLAVVWGVPRPRSGDIEGNIGRSPRNR 201
>Q182T6_CLOD6 (tr|Q182T6) Pseudouridine synthase OS=Clostridium difficile (strain
630) GN=CD630_25960 PE=3 SV=1
Length = 303
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 89/211 (42%), Positives = 122/211 (57%), Gaps = 29/211 (13%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
RLD +++ ++ +SR+ +Q IK G V VN +V K + VK D I I E + L +
Sbjct: 17 RLDIYLAEQLGDMSRSYIQKIIKDGKVKVNNKV-EKARYLVKEEDNIVIEIPEPKVLEVL 75
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
P+DIP+DIVYED+ +L+INKP MVVHPAPGN TLVNGIL+HC
Sbjct: 76 PQDIPIDIVYEDDDVLIINKPQDMVVHPAPGNYENTLVNGILYHCK-------------- 121
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
D+L+S IRPGIVHR+DK TSGLL++AK+ ++H L+EQ K T
Sbjct: 122 -----DKLSSI---------NGVIRPGIVHRIDKDTSGLLMIAKNNYAHNFLAEQLKEHT 167
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
I R Y + GV ++ +GR+P +R
Sbjct: 168 ITREYEFICYGVVKEDKITVDKPIGRNPKDR 198
>K8ZB62_9ENTE (tr|K8ZB62) Pseudouridine synthase OS=Catellicoccus marimammalium
M35/04/3 GN=C683_0618 PE=3 SV=1
Length = 301
Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 86/217 (39%), Positives = 127/217 (58%), Gaps = 30/217 (13%)
Query: 77 IGSGKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAEL 136
I + K R+D ++ +R+++Q+ +K G+V VNG+ K ++ V +GD+I T E
Sbjct: 8 ITTEKGRIDKVLANLFPEYTRSKLQTWVKEGIVTVNGKPT-KSNYKVATGDQISFTPQED 66
Query: 137 QSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSN 196
+ L A P++IPLDI+YEDE ++VINKP MVVHP+PG+ GTLVNG+L+H L
Sbjct: 67 KPLTAEPQNIPLDIIYEDEDVIVINKPQGMVVHPSPGHPDGTLVNGLLYHTQL------- 119
Query: 197 EDALAYTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSE 256
E +IRPGIVHR+DK TSGLL+VAK+ SH+ L++
Sbjct: 120 ----------------------SEMEEGTIRPGIVHRIDKDTSGLLMVAKNNQSHESLAK 157
Query: 257 QFKLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
Q +T R Y+++ G G+I+ +GRDP +R
Sbjct: 158 QLSEKTSHRRYLAIVHGDIDHAKGKIDAPIGRDPKDR 194
>F5UNW1_9CYAN (tr|F5UNW1) Pseudouridine synthase, RluA family OS=Microcoleus
vaginatus FGP-2 GN=MicvaDRAFT_5177 PE=4 SV=1
Length = 321
Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 84/211 (39%), Positives = 117/211 (55%), Gaps = 30/211 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
RLD W+S +I +SR+R+Q+ I G V VN +VK+GD I+ + E+Q+
Sbjct: 27 RLDIWLSNQIPDLSRSRIQTLISQGNVKVNDETCTSKKISVKTGDRIQIILPEIQATNLQ 86
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
PE IPLDI+YED+ L++INKPA +VVHPA G+ GTLVN +L HC P AE
Sbjct: 87 PEAIPLDILYEDDSLIIINKPAGLVVHPAAGHQDGTLVNALLAHC--PLAEIGGVQ---- 140
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
RPGIVHRLDK T+G + +AK + +H+ L Q K +T
Sbjct: 141 ------------------------RPGIVHRLDKDTTGAIAIAKTDIAHQHLQAQLKTKT 176
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
+R Y+ + G P G I++ +GR P +R
Sbjct: 177 ARREYLGIVYGAPNSETGTIDLPIGRHPTDR 207
>K8GJQ9_9CYAN (tr|K8GJQ9) Ribosomal large subunit pseudouridine synthase D
OS=Oscillatoriales cyanobacterium JSC-12
GN=OsccyDRAFT_3371 PE=4 SV=1
Length = 322
Score = 157 bits (397), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 89/228 (39%), Positives = 126/228 (55%), Gaps = 25/228 (10%)
Query: 66 GVQLEEIVDNRIGSGKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKS 125
V++E +VD + R+DS+++ ++ +SR+R+Q I V +NG V V
Sbjct: 4 AVEVECLVD--VEDAGDRIDSFLTDQLEDLSRSRIQKLISQKQVLINGTVCTSKKEIVNQ 61
Query: 126 GDEIKCTIAELQSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILH 185
GD I+ I + + L PE+IPLDI+YED+ LL+INKPA MVVHP+PG++ GTLVN +L
Sbjct: 62 GDLIRVQIPDAEPLDIQPENIPLDILYEDDELLIINKPAGMVVHPSPGHSQGTLVNALLW 121
Query: 186 HCNLPNAEFSNEDALAYTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVA 245
HC N E S+ G RPGIVHRLDK T+G + VA
Sbjct: 122 HCRTTNGE-----------------------STLSGIGGVQRPGIVHRLDKDTTGAICVA 158
Query: 246 KDEHSHKKLSEQFKLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
K + +H L +QF +T +R Y L G P +G I+ +GR P +R
Sbjct: 159 KTDLAHLHLQQQFHDKTARRDYWGLVHGAPKAESGTIDAPIGRHPVDR 206
>K9VJ80_9CYAN (tr|K9VJ80) Ribosomal large subunit pseudouridine synthase D
OS=Oscillatoria nigro-viridis PCC 7112 GN=Osc7112_3151
PE=4 SV=1
Length = 321
Score = 157 bits (396), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 85/211 (40%), Positives = 116/211 (54%), Gaps = 30/211 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
RLD W+S +I +SR+R+Q+ I G V VN +VK+GD I T+ E Q
Sbjct: 27 RLDIWLSNQIPDLSRSRIQTLISQGNVKVNDETCTSKKISVKTGDRIHLTLPETQPTSLQ 86
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
PE IPLDI+YED+ L++INKPA +VVHPA G+ GTLVN +L HC P AE
Sbjct: 87 PEAIPLDILYEDDSLIIINKPAGLVVHPAAGHADGTLVNALLAHC--PLAEIGGVQ---- 140
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
RPGIVHRLDK T+G + +AK + +H+ L Q K +T
Sbjct: 141 ------------------------RPGIVHRLDKDTTGAIAIAKTDIAHQHLQAQLKTKT 176
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
+R Y+ + G P+ G I++ +GR P +R
Sbjct: 177 ARREYLGVVYGTPSTETGTIDLPIGRHPTDR 207
>E8N3K0_ANATU (tr|E8N3K0) Pseudouridine synthase OS=Anaerolinea thermophila
(strain DSM 14523 / JCM 11388 / NBRC 100420 / UNI-1)
GN=ANT_09800 PE=3 SV=1
Length = 310
Score = 156 bits (395), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 80/211 (37%), Positives = 120/211 (56%), Gaps = 29/211 (13%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
RLD ++ +SR+++Q I+ G V V+G+ V K F V++G E++ I Q
Sbjct: 17 RLDKFLVAHFPELSRSQIQGLIRDGFVRVSGKTVQKTGFLVEAGKEVEIRIPPPQPTSLE 76
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
PE IPL++++E++ LL++NKPA MVVHP+ G+ GTLV+ L H
Sbjct: 77 PEPIPLEVIFENQDLLLVNKPAGMVVHPSAGHDRGTLVHAALAHI--------------- 121
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
EG RPG+VHRLDK TSGL+++AK++ +H+ L +QF+LR
Sbjct: 122 --------------PELEGIHGEERPGVVHRLDKDTSGLILLAKNDRAHRWLQDQFRLRK 167
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
+++ Y++L G P GRIE +GRDP NR
Sbjct: 168 VQKTYLALVDGRPPTPTGRIEAPIGRDPKNR 198
>B2UL66_AKKM8 (tr|B2UL66) Pseudouridine synthase OS=Akkermansia muciniphila
(strain ATCC BAA-835) GN=Amuc_0008 PE=3 SV=1
Length = 323
Score = 156 bits (394), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 89/214 (41%), Positives = 121/214 (56%), Gaps = 30/214 (14%)
Query: 80 GKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSL 139
GK RLD +++ + +SR+R+QS IKSG V VNG K V GD I I E +
Sbjct: 10 GKIRLDQYLAAHLPELSRSRIQSLIKSGDVLVNGSPA-KPKNPVSRGDSITVRIPEPEPA 68
Query: 140 RAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDA 199
A P+DIPLDI+YEDE ++VINK + MVVHPA GN GT+VN +LHHC
Sbjct: 69 EAQPQDIPLDILYEDEDVVVINKESGMVVHPAAGNPDGTIVNALLHHCG----------- 117
Query: 200 LAYTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFK 259
G RPGIVHRLDK TSG LV+AK++ +H+ L+ QF
Sbjct: 118 ------------------DLSGIGGVERPGIVHRLDKDTSGCLVIAKNDGAHQSLTAQFA 159
Query: 260 LRTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
R+ ++ Y+++ G+P+ +G + +GR P NR
Sbjct: 160 ARSTEKRYLAVVQGIPSQSSGTVFTHIGRHPVNR 193
>M1YZL6_9CLOT (tr|M1YZL6) Pseudouridylate synthase OS=Clostridium ultunense Esp
GN=rluD PE=4 SV=1
Length = 305
Score = 156 bits (394), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 91/211 (43%), Positives = 129/211 (61%), Gaps = 30/211 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
RLDS+++ R+N +SR+ +Q IK GLV VNG +K + VK GD I+ + E + +
Sbjct: 15 RLDSYLAFRLNNVSRSYLQKLIKEGLVLVNGNG-SKARYRVKIGDYIQIKLPEQEQEEPI 73
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
PE++PLDI+YED+ ++++NKP MVVHPAPGN +GTLVN +L+H ++ +S +D
Sbjct: 74 PENLPLDIIYEDKDIVIVNKPEDMVVHPAPGNPTGTLVNALLYHV---DSLYSGKDI--- 127
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
IRPGIVHRLDK TSGLL VAK+E ++ L +Q K R+
Sbjct: 128 -----------------------IRPGIVHRLDKDTSGLLAVAKNEIAYNSLIQQLKNRS 164
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
++RVY +L GV G I V +GR P +R
Sbjct: 165 MERVYEALVYGVLNSDEGTINVPIGRHPVDR 195
>I0I6T0_CALAS (tr|I0I6T0) Pseudouridine synthase OS=Caldilinea aerophila (strain
DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1)
GN=CLDAP_29280 PE=3 SV=1
Length = 325
Score = 156 bits (394), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 90/214 (42%), Positives = 123/214 (57%), Gaps = 33/214 (15%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTI--AELQSLR 140
R+D W++ R+ SR+ +Q I+ GLV + GR V K ++ G +I I + +++
Sbjct: 18 RIDRWLADRMPERSRSEIQRWIRQGLVRIEGRPV-KPGQRIEPGQQITVEIPPSPVETTL 76
Query: 141 AVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDAL 200
A PE I L+IVYED+ LLVI+KPA MVVHP+PG+ SGTLV+ +LHHC
Sbjct: 77 A-PEAIALNIVYEDDDLLVIDKPAGMVVHPSPGHASGTLVHAVLHHC------------- 122
Query: 201 AYTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKL 260
EG RPGIVHRLDK TSGL+VVAK +++H+ L QFK
Sbjct: 123 ----------------PQIEGVGGEQRPGIVHRLDKDTSGLIVVAKHDYAHRFLQAQFKD 166
Query: 261 RTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNRT 294
RT+ + Y++L G TP GRI +GR P + T
Sbjct: 167 RTVYKQYLALVEGRLTPSRGRINAPIGRHPTHHT 200
>L8M0F7_9CYAN (tr|L8M0F7) Pseudouridine synthase OS=Xenococcus sp. PCC 7305
GN=Xen7305DRAFT_00015680 PE=3 SV=1
Length = 322
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 81/211 (38%), Positives = 121/211 (57%), Gaps = 29/211 (13%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
RLD W+++++ ISR+R+Q I+ G V +NG+V ++ +GD +K TI L +
Sbjct: 28 RLDRWLASQLTDISRSRIQKLIEDGHVILNGKVCGSKKNSLTNGDRLKITIPAPTKLDLI 87
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
E+IPLD++YEDE L++INKP +VVHPAPG+ +GTLVN +L+HC
Sbjct: 88 AENIPLDVLYEDEELIIINKPPGLVVHPAPGHPNGTLVNALLYHC--------------- 132
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
+ G RPGIVHRLDK T+G +VVAK + +H+ L Q K +T
Sbjct: 133 --------------QNLAGIGGVERPGIVHRLDKDTTGAIVVAKSDRAHQHLQAQIKAKT 178
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
+R Y + G P +G+I + +GR ++R
Sbjct: 179 ARREYWGVVCGCPKTESGQINLPIGRHKSDR 209
>D6GS38_FILAD (tr|D6GS38) Pseudouridine synthase OS=Filifactor alocis (strain
ATCC 35896 / D40 B5) GN=HMPREF0389_00394 PE=3 SV=1
Length = 293
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 91/211 (43%), Positives = 125/211 (59%), Gaps = 29/211 (13%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
RLD +IS+ + ISR+ +Q I V VNG+ K SF +KS D I+ I E +S+
Sbjct: 2 RLDQFISSNLPSISRSYIQKLIDEKRVLVNGKY-EKKSFLLKSFDNIEIYIPEPKSIEIS 60
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
PE+IPL+I++ED+ +L++NK MVVHPAPGN S TLVN IL+HC
Sbjct: 61 PENIPLNILFEDKDILIVNKEKGMVVHPAPGNYSHTLVNAILYHC--------------- 105
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
+ + E+N + IRPGIVHR+DK TSG+LV+AK+ +H+ LSEQFK +
Sbjct: 106 -KGNLSEINGY------------IRPGIVHRIDKDTSGILVIAKNNDAHQFLSEQFKEHS 152
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
I+R Y +T G IE +GR+P NR
Sbjct: 153 IQREYQLITFGNIKTTHLSIEQPIGRNPKNR 183
>D3PQ17_MEIRD (tr|D3PQ17) Pseudouridine synthase OS=Meiothermus ruber (strain
ATCC 35948 / DSM 1279 / VKM B-1258 / 21) GN=Mrub_0878
PE=3 SV=1
Length = 327
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 93/219 (42%), Positives = 131/219 (59%), Gaps = 18/219 (8%)
Query: 76 RIGSGKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAE 135
R + RLD ++ N SRA+ Q I++GLV V G+VV K S+ ++ G+ ++
Sbjct: 3 RFSASGVRLDQALAFEAN-TSRAKAQEWIEAGLVTVGGKVVTKPSYKLR-GETVEVEPPP 60
Query: 136 LQSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFS 195
Q EDIPL I+YED L+VINKPA M+ HPAPG SGTLVN IL F
Sbjct: 61 PQPASVAAEDIPLHILYEDPDLIVINKPAGMITHPAPGVYSGTLVNAIL-------GRFG 113
Query: 196 NEDALAYTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLS 255
+ +L +S++E QA E IRPGIVHRLDKGTSG++VVA+ E +H++L+
Sbjct: 114 LDLSLG---ESEEEGGLLLQAQKPE----LIRPGIVHRLDKGTSGVIVVARHEAAHRRLA 166
Query: 256 EQFKLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNRT 294
E F R++ + Y++LT+G+P G + +GR P +RT
Sbjct: 167 EAFAGRSVYKRYIALTVGIPR--EGLLSAPIGRHPVDRT 203
>B0C246_ACAM1 (tr|B0C246) Pseudouridine synthase OS=Acaryochloris marina (strain
MBIC 11017) GN=AM1_2337 PE=3 SV=1
Length = 328
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 78/211 (36%), Positives = 123/211 (58%), Gaps = 24/211 (11%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
R+D W++ +++ +SR+ +Q I+ G V +N ++ + ++ GD+++ I Q L
Sbjct: 14 RIDRWLANQVDSLSRSHIQKLIEQGHVQINHKICTSKKYALQIGDQVEVHIPAPQPLALE 73
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
PE + L+I++ED+HLL++NKPA +VVHPAPG+ +GTLV+G+L HC +D
Sbjct: 74 PEPMDLEILFEDDHLLIVNKPAGLVVHPAPGHATGTLVHGLLAHC---------QDG--- 121
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
Q S+ G RPGIVHRLDK T+G ++VAK +H+ L Q +T
Sbjct: 122 ------------QGSTLSGIGGVERPGIVHRLDKDTTGAIMVAKTNQAHQHLQAQIAAKT 169
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
R YV L G P+ + GR+E +GR ++R
Sbjct: 170 ALREYVGLVYGRPSALTGRMEFPIGRHRSDR 200
>R6U5F3_9CLOT (tr|R6U5F3) Pseudouridine synthase OS=Clostridium sp. CAG:964
GN=BN818_01153 PE=4 SV=1
Length = 309
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 85/211 (40%), Positives = 123/211 (58%), Gaps = 29/211 (13%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
R+D ++S ++ I+R+ +QS I G V VN + V K SF K+GD + TI + L A
Sbjct: 16 RIDKFLSEKLVEITRSAIQSYIADGEVSVNKKTVGK-SFKTKTGDIVSITIPDPVPLEAE 74
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
E+IPLDIVYED+ ++++NKP MVVHPAPGN +GTLVN +L+HC
Sbjct: 75 AENIPLDIVYEDDDVIIVNKPKGMVVHPAPGNYTGTLVNALLYHCK-------------- 120
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
S G +RPGIVHR+DK TSGLL+VAK++ SH+ +++Q K +
Sbjct: 121 --------------DSLSGINGVLRPGIVHRIDKNTSGLLIVAKNDSSHRIIAQQIKDHS 166
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
R Y ++ G +G I +GR+P++R
Sbjct: 167 FTREYQTVVYGNIKEDSGTINQPIGRNPSDR 197
>H1W8Z4_9CYAN (tr|H1W8Z4) 23S rRNA pseudouridine synthase OS=Arthrospira sp. PCC
8005 GN=rluD PE=4 SV=1
Length = 308
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 86/225 (38%), Positives = 124/225 (55%), Gaps = 30/225 (13%)
Query: 69 LEEIVDNRIGSGKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDE 128
+E I +++ G + RLD W+S R++ +SR+R+Q+ I SG V VN V+ GD
Sbjct: 3 IELICEDKDGENQ-RLDKWLSERVDQLSRSRLQALISSGHVWVNNSPCTSKKATVQIGDR 61
Query: 129 IKCTIAELQSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCN 188
I+ I L +IPLDI+YEDE LL+INKPA +VVHPAPG+ + TLVN +L HC
Sbjct: 62 IQVEIPPAIPLELKATNIPLDILYEDEELLIINKPAGLVVHPAPGHENDTLVNALLAHCE 121
Query: 189 LPNAEFSNEDALAYTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDE 248
+ G RPGIVHRLDK T+G + +AK +
Sbjct: 122 -----------------------------TLAGIGGVQRPGIVHRLDKDTTGAIAIAKTD 152
Query: 249 HSHKKLSEQFKLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
H+H+ L Q + +T +R Y+ + GVP +G I+ +GR P++R
Sbjct: 153 HAHQHLQAQIQAKTARRQYLGIIYGVPKTTSGVIDQPIGRHPSDR 197
>H3NES8_9LACT (tr|H3NES8) Pseudouridine synthase OS=Dolosigranulum pigrum ATCC
51524 GN=HMPREF9703_01059 PE=3 SV=1
Length = 303
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 128/227 (56%), Gaps = 36/227 (15%)
Query: 68 QLEEIVDNRIGSGKPRLDSWISTRINGISRARVQSSIKSGLVHVNG-RVVNKVSFNVKSG 126
Q+E +D G RLD +S I +SR ++Q I G V VNG + +NK + V SG
Sbjct: 5 QIELTIDQERG----RLDKVLSNLIAEVSRNQIQQLIAEGAVLVNGEKQLNK--YKVASG 58
Query: 127 DEIKCTIAELQSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHH 186
D++K TI E + + A P++IPL+IVYEDE + V+NKP MVVHPA G+ GTLVN +L+H
Sbjct: 59 DQVKITIPEPEEIEAKPQNIPLEIVYEDEDIAVVNKPQGMVVHPALGHPDGTLVNALLYH 118
Query: 187 CNLPNAEFSNEDALAYTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAK 246
+ + G IRPGIVHR+DK TSGLL+VAK
Sbjct: 119 LD-----------------------------NLSGINGKIRPGIVHRIDKDTSGLLMVAK 149
Query: 247 DEHSHKKLSEQFKLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
++ +H LS Q K +T KR Y++L G I+ +GRDP++R
Sbjct: 150 NDQAHHHLSAQLKEKTSKREYIALVHGRIPHEKATIDAPIGRDPHDR 196
>R7MNI6_9FIRM (tr|R7MNI6) Pseudouridine synthase OS=Ruminococcus sp. CAG:624
GN=BN739_01870 PE=4 SV=1
Length = 304
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 85/215 (39%), Positives = 123/215 (57%), Gaps = 29/215 (13%)
Query: 79 SGKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQS 138
S RLD +++ I+ ++R+ VQ I+ G+V +G+++ K ++ ++ GD I+ I E +
Sbjct: 13 SAGQRLDRFLAQEIDNLTRSAVQGIIEKGMVKCSGKILQK-NYKLRKGDIIETEIPEPEV 71
Query: 139 LRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNED 198
L E+IPLDI+YED LLV+NKP MVVHPA GN +GTLVN +L+HC
Sbjct: 72 LDVKAENIPLDIIYEDSDLLVVNKPKGMVVHPAHGNYNGTLVNALLYHCK---------- 121
Query: 199 ALAYTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQF 258
S G IRPGIVHR+DK TSGLL+VAK++++H KLSEQ
Sbjct: 122 ------------------DSLSGINGVIRPGIVHRIDKNTSGLLIVAKNDNAHIKLSEQI 163
Query: 259 KLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
K + R Y ++ +G G I+ +GR +R
Sbjct: 164 KAHSFTREYEAVAVGSFKETEGTIDAPIGRHHTDR 198
>N4WDF0_9BACI (tr|N4WDF0) Uncharacterized protein OS=Gracilibacillus halophilus
YIM-C55.5 GN=J416_01174 PE=4 SV=1
Length = 304
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 88/211 (41%), Positives = 124/211 (58%), Gaps = 30/211 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
R+D + T +G SR ++++ V VNG V K ++ +SGD+I+ + E++ +
Sbjct: 16 RIDKLLVTITDGYSRTQIKTWFDEKRVKVNGTSV-KQNYKCQSGDDIQWEVPEVEPMEIE 74
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
PE IP+DI+Y+DE LL++NKP+ MVVHPAPG+ GTLVN +L+HC
Sbjct: 75 PEPIPIDILYQDEDLLIVNKPSDMVVHPAPGHHHGTLVNALLYHC--------------- 119
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
D+L S G A RPGIVHR+DK TSGLLVVAK + +H++LSEQ K +
Sbjct: 120 -----DDL------SGINGVA---RPGIVHRIDKDTSGLLVVAKHDRAHERLSEQLKDKQ 165
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
IKR Y ++ G T G I+ +GR NR
Sbjct: 166 IKRFYQAIVHGNITHEYGTIDAPIGRSKQNR 196
>J4WX34_9FIRM (tr|J4WX34) Pseudouridine synthase OS=Selenomonas sp. CM52
GN=HMPREF1153_0412 PE=3 SV=1
Length = 301
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 88/222 (39%), Positives = 120/222 (54%), Gaps = 32/222 (14%)
Query: 72 IVDNRIGSGKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKC 131
IVD G+ RLD +++ R +SR+ +Q I+SG V VNGR K + ++ GD ++
Sbjct: 6 IVDE--GAAGERLDRFLAGRELEVSRSHIQKLIESGCVLVNGRTA-KANAKLREGDAVET 62
Query: 132 TIAELQSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPN 191
+ E Q L +PEDIPLDI+YED ++VINK MVVHPA G GTLVN +LHHC
Sbjct: 63 ELPEAQELEILPEDIPLDILYEDSDVIVINKARGMVVHPAAGAADGTLVNALLHHCE--- 119
Query: 192 AEFSNEDALAYTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSH 251
G IRPGIVHRLDK TSG++V AK++ +H
Sbjct: 120 --------------------------DLSGINGVIRPGIVHRLDKDTSGVMVAAKNDRAH 153
Query: 252 KKLSEQFKLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
L+EQ + +T +R+Y ++ G G I +GR P R
Sbjct: 154 VDLAEQIREKTAQRIYRAIVCGTIAEDRGEIRAPIGRHPTER 195
>K1WYV4_SPIPL (tr|K1WYV4) Pseudouridine synthase RluA family OS=Arthrospira
platensis C1 GN=SPLC1_S590270 PE=4 SV=1
Length = 308
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 85/225 (37%), Positives = 124/225 (55%), Gaps = 30/225 (13%)
Query: 69 LEEIVDNRIGSGKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDE 128
+E I +++ G + RLD W+S R++ +SR+R+Q+ I SG V +N V+ GD
Sbjct: 3 IELICEDKDGENQ-RLDKWLSERVHQLSRSRLQALISSGHVWINNSPCTSKKATVQIGDR 61
Query: 129 IKCTIAELQSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCN 188
I+ I L +IPLDI+YEDE LL+INKPA +VVHPAPG+ + TLVN +L HC
Sbjct: 62 IQVEIPPAIPLELKATNIPLDILYEDEELLIINKPAGLVVHPAPGHENDTLVNALLAHCE 121
Query: 189 LPNAEFSNEDALAYTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDE 248
+ G RPGIVHRLDK T+G + +AK +
Sbjct: 122 -----------------------------TLAGIGGVQRPGIVHRLDKDTTGAIAIAKTD 152
Query: 249 HSHKKLSEQFKLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
H+H+ L Q + +T +R Y+ + GVP +G I+ +GR P++R
Sbjct: 153 HAHQHLQAQIQAKTARRQYLGIIYGVPKTTSGVIDQPIGRHPSDR 197
>B5W1E5_SPIMA (tr|B5W1E5) Pseudouridine synthase, RluA family OS=Arthrospira
maxima CS-328 GN=AmaxDRAFT_2587 PE=4 SV=1
Length = 308
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 85/225 (37%), Positives = 124/225 (55%), Gaps = 30/225 (13%)
Query: 69 LEEIVDNRIGSGKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDE 128
+E I +++ G + RLD W+S R++ +SR+R+Q+ I SG V +N V+ GD
Sbjct: 3 IELICEDKDGENQ-RLDKWLSERVHQLSRSRLQALISSGHVWINNSPCTSKKATVQIGDR 61
Query: 129 IKCTIAELQSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCN 188
I+ I L +IPLDI+YEDE LL+INKPA +VVHPAPG+ + TLVN +L HC
Sbjct: 62 IQVEIPPAIPLELKATNIPLDILYEDEELLIINKPAGLVVHPAPGHENDTLVNALLAHCE 121
Query: 189 LPNAEFSNEDALAYTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDE 248
+ G RPGIVHRLDK T+G + +AK +
Sbjct: 122 -----------------------------TLAGIGGVQRPGIVHRLDKDTTGAIAIAKTD 152
Query: 249 HSHKKLSEQFKLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
H+H+ L Q + +T +R Y+ + GVP +G I+ +GR P++R
Sbjct: 153 HAHQHLQAQIQAKTARRQYLGIIYGVPKTTSGVIDQPIGRHPSDR 197
>R7L7F4_9CLOT (tr|R7L7F4) Pseudouridine synthase OS=Clostridium sp. CAG:273
GN=BN581_01143 PE=4 SV=1
Length = 322
Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 86/211 (40%), Positives = 122/211 (57%), Gaps = 29/211 (13%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
RLD++I++++ +SR VQ IK G + VN + K S+ V+ GD+I I + +
Sbjct: 29 RLDAYITSKLEDLSRNMVQKLIKKGDILVNNKE-EKESYKVQKGDQILVVIPKPEEKGLK 87
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
++IPLDI+YEDE +LV+NKP MVVHP GN GTLVN I+ HC ED+L+
Sbjct: 88 KQEIPLDIIYEDEDILVVNKPKGMVVHPGNGNPDGTLVNAIMAHC---------EDSLS- 137
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
G IRPGIVHR+DK TSGLLV+AK++ +H LSEQ K R
Sbjct: 138 ------------------GIGGEIRPGIVHRIDKDTSGLLVIAKNDKAHINLSEQIKNRQ 179
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
+ ++YV+L G+ + I + +GR +R
Sbjct: 180 VNKIYVALVKGIISENEATINMPIGRSTKDR 210
>Q9K9V3_BACHD (tr|Q9K9V3) Pseudouridine synthase OS=Bacillus halodurans (strain
ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
GN=BH2542 PE=3 SV=1
Length = 305
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 84/211 (39%), Positives = 126/211 (59%), Gaps = 30/211 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
R+D +++ + SR +VQ IK G V +NGR + K ++ V++GD ++ + E + L V
Sbjct: 17 RIDKFLTAQGEEWSRTQVQQWIKDGHVLINGRTI-KSNYKVETGDTLELFVPEPEVLEVV 75
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
PE+IP++I+YEDE + V+NKP MVVHPAPG+T+GTLVN +++HCN
Sbjct: 76 PENIPIEIIYEDEDVAVVNKPRGMVVHPAPGHTTGTLVNALMYHCN-------------- 121
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
SS G +RPGIVHR+DK TSGLL++AK++ +H+ L Q K +T
Sbjct: 122 ------------DLSSINGV---VRPGIVHRIDKDTSGLLMIAKNDRAHESLVNQLKAKT 166
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
+RVY ++ G G I+ +GRD +R
Sbjct: 167 TERVYQAIVHGNIPHDHGTIDAPIGRDKVDR 197
>R5SYM7_9CLOT (tr|R5SYM7) Pseudouridine synthase OS=Clostridium sp. CAG:710
GN=BN761_00372 PE=4 SV=1
Length = 294
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 92/211 (43%), Positives = 125/211 (59%), Gaps = 33/211 (15%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
RLD +++ ++ ISR+++Q IK GLV VNG+ VN SF + DEI+ T +
Sbjct: 11 RLDQYLARELD-ISRSKIQKDIKEGLVKVNGKNVNS-SFLLSIDDEIEITKRNSKPSTVE 68
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
P DIPLDIVYEDE+LLVINK + +VVHPAPG+ + TLVN + + L N + NE
Sbjct: 69 PLDIPLDIVYEDEYLLVINKQSGLVVHPAPGHYTDTLVNALTNKFKLSNID--NE----- 121
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
RPGIVHR+DK TSGL++VAKD+ +H+ LSE K +
Sbjct: 122 ------------------------RPGIVHRIDKDTSGLMLVAKDDKTHELLSEMIKNKE 157
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
++RVY ++ GV G I+ +GRDPNNR
Sbjct: 158 VERVYWAIVDGVIKHDTGTIDAPIGRDPNNR 188
>K9RG13_9CYAN (tr|K9RG13) Ribosomal large subunit pseudouridine synthase D
OS=Rivularia sp. PCC 7116 GN=Riv7116_3571 PE=4 SV=1
Length = 309
Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 86/212 (40%), Positives = 116/212 (54%), Gaps = 31/212 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
RLDS++S + +SR+R+Q I+ G V +NG + N ++K GD I I Q L
Sbjct: 17 RLDSYLSGKKLDLSRSRIQQLIEQGHVKLNGEICNSKKNSLKQGDLIVLEIPTAQPLELQ 76
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHC-NLPNAEFSNEDALA 201
PE+IPLDI+YEDE +L++NKPA +VVHPAPG+ +GTLVN +L HC NLP
Sbjct: 77 PENIPLDILYEDEQILILNKPAGLVVHPAPGHPNGTLVNAVLAHCPNLP----------- 125
Query: 202 YTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLR 261
G RPGIVHRLDK T+G + +AK E +H L Q K +
Sbjct: 126 -------------------GIGGVQRPGIVHRLDKDTTGAIAIAKTELAHHSLQAQLKAK 166
Query: 262 TIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
T +R Y+ + G G I + +GR P R
Sbjct: 167 TARREYLGVVYGATKQPEGTINLPIGRHPKER 198
>C0ZG48_BREBN (tr|C0ZG48) Pseudouridine synthase OS=Brevibacillus brevis (strain
47 / JCM 6285 / NBRC 100599) GN=BBR47_37800 PE=3 SV=1
Length = 309
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 85/211 (40%), Positives = 121/211 (57%), Gaps = 30/211 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
R+D +I+ + SR++VQ+ +K G V VNG + K ++ +++ DE+ + + +
Sbjct: 22 RIDKFITLQNEDWSRSQVQAWVKEGRVTVNGEPI-KNNYKLQAEDEVTLRVPPPKEMAIQ 80
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
PE++ LDIVYED ++V+NKP +VVHPAPG+ SGTLVNG+L HC
Sbjct: 81 PEEMSLDIVYEDSDVVVVNKPRGLVVHPAPGHYSGTLVNGLLAHC--------------- 125
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
G +RPGIVHR+DK TSGLL+VAK++ +H L+EQ K T
Sbjct: 126 --------------KDLSGINGVLRPGIVHRIDKDTSGLLMVAKNDKAHMGLAEQLKAHT 171
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
+ R YV+L GV G IE +GRDP NR
Sbjct: 172 VNRKYVALVHGVIPHEMGTIEAPIGRDPKNR 202
>R7FUL2_9FIRM (tr|R7FUL2) Pseudouridine synthase RluA family OS=Dorea longicatena
CAG:42 GN=BN651_01684 PE=4 SV=1
Length = 306
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 82/211 (38%), Positives = 125/211 (59%), Gaps = 29/211 (13%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
R+D ++S + SR+ +Q +K G V VN + V K ++ + GD ++ T+ E + V
Sbjct: 14 RIDRYLSDELEDRSRSYIQKIMKEGYVKVNQKPV-KSNYRLSFGDSVEVTLPEAKEPDIV 72
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
PE+IPLDI+YED+ +++INKP MVVHPAPG+ SGTLVN +++HC
Sbjct: 73 PENIPLDILYEDQDIIMINKPKQMVVHPAPGHYSGTLVNALMYHCG-------------- 118
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
DEL+ G +RPGIVHR+D T+G LVV K++ +H+ LSEQ K+ +
Sbjct: 119 -----DELS---------GINGCMRPGIVHRIDMDTTGSLVVCKNDKAHQSLSEQLKVHS 164
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
I+R+YV++ G +G + +GR P +R
Sbjct: 165 IRRIYVAIVHGNIKEDSGTVNAPIGRHPTDR 195
>C1FEQ4_MICSR (tr|C1FEQ4) Predicted protein OS=Micromonas sp. (strain RCC299 /
NOUM17) GN=MICPUN_96893 PE=3 SV=1
Length = 357
Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 96/234 (41%), Positives = 139/234 (59%), Gaps = 27/234 (11%)
Query: 61 RANYAGVQLEEIVDNRIGSGKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVS 120
R+++ G EE+ R S RLD++++ +I+G+SR+R+ SIKSG+V VNG V K S
Sbjct: 19 RSDFQGE--EEVFVARASSS--RLDAFLADQISGVSRSRIVESIKSGVVVVNGNVTTKPS 74
Query: 121 FNVKSGDEIKC-TIAELQSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTL 179
+ GD + C I PE+IPLD+V+ED+HL+V+NKP MVVHP+ G+ G+L
Sbjct: 75 HKLDIGDRVICGEIVASPPTEVAPENIPLDVVFEDDHLVVVNKPPGMVVHPSAGHAGGSL 134
Query: 180 VNGILHHCNLPNAEFSNEDALAYTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTS 239
VN +L HCN E SN D+ + R G+VHR+DKGTS
Sbjct: 135 VNALLFHCN----ERSNRG---------DDASKMIDVP---------RLGVVHRIDKGTS 172
Query: 240 GLLVVAKDEHSHKKLSEQFKLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
GLLV+AKD + L QF R+++R Y+++ +G P +GRI+ +GRDP +R
Sbjct: 173 GLLVMAKDAAAQAGLQTQFANRSVRRRYLAIVLGTPARESGRIDAPIGRDPADR 226
>R7H5I2_9FIRM (tr|R7H5I2) Pseudouridine synthase OS=Ruminococcus sp. CAG:403
GN=BN645_00678 PE=4 SV=1
Length = 306
Score = 154 bits (388), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 93/212 (43%), Positives = 121/212 (57%), Gaps = 30/212 (14%)
Query: 83 RLDSW-ISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRA 141
RLD W I ISR+ +QS ++ G V VN + V K ++ VK+ D++ TI E SL
Sbjct: 17 RLDKWLIQQEAITISRSMLQSLMEQGAVLVNDQPVAK-NYKVKAQDKVAVTIPEPVSLSL 75
Query: 142 VPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALA 201
PE+IPLDIVYED+ LLV+NKP MVVHPAPGN +GTLV+ +L+HC
Sbjct: 76 EPENIPLDIVYEDDDLLVVNKPKGMVVHPAPGNLTGTLVHALLYHCG------------- 122
Query: 202 YTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLR 261
D L+S IRPGIVHR+DK TSGLL+VAK + +H LS Q +
Sbjct: 123 ------DRLSSI---------NGVIRPGIVHRIDKNTSGLLMVAKTDFAHHALSAQIQAH 167
Query: 262 TIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
T R Y ++ IG +G I +GR P +R
Sbjct: 168 TFTREYQAICIGHLKEASGTICAPIGRHPVDR 199
>R6TIS3_9STAP (tr|R6TIS3) Pseudouridine synthase OS=Staphylococcus sp. CAG:324
GN=BN609_00118 PE=4 SV=1
Length = 313
Score = 154 bits (388), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 87/211 (41%), Positives = 120/211 (56%), Gaps = 30/211 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
R+D ++S +SR+ ++ L+ VN ++V K S+ V + D I E + + +
Sbjct: 21 RVDKYLSEVCEDLSRSEIKGYFDESLILVNSKIV-KPSYKVVNDDLIYVLTKEAEIVDII 79
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
PE+IPLDIVYED LLV+NKP+ MVVHPAPG++ TLVN +L HC +
Sbjct: 80 PEEIPLDIVYEDNDLLVVNKPSGMVVHPAPGHSHNTLVNALLFHCKM------------- 126
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
S G A R GIVHR+DK TSGLLVV+K+ +HK LSEQ + +T
Sbjct: 127 -------------LSDIGGQA---RSGIVHRIDKDTSGLLVVSKNNFTHKVLSEQLRNKT 170
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
KR Y+++ IG G+I +GRDPNNR
Sbjct: 171 TKRKYIAIVIGNINHNLGKITAPIGRDPNNR 201
>M8BU77_AEGTA (tr|M8BU77) RNA pseudourine synthase 2, chloroplastic OS=Aegilops
tauschii GN=F775_03951 PE=4 SV=1
Length = 220
Score = 153 bits (387), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 86/145 (59%), Positives = 102/145 (70%), Gaps = 10/145 (6%)
Query: 133 IAELQSL--RAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLP 190
+ ELQ L +A PEDIPLDIVYEDEHLLV+NKPAHMVVHPAP N +GTLVN I HHC +
Sbjct: 1 MLELQPLSAKAEPEDIPLDIVYEDEHLLVVNKPAHMVVHPAPRNANGTLVNAIFHHCKIS 60
Query: 191 N----AEFSNEDALAYTEDSDDELNSFFQASSCEGSA----ASIRPGIVHRLDKGTSGLL 242
A S +D + D D ++ Q + E S+ +RPGIVHRLDKGTSGLL
Sbjct: 61 TFTCLARNSIDDECPESSDDDVDVFDVDQFAIGEVSSDVREGIVRPGIVHRLDKGTSGLL 120
Query: 243 VVAKDEHSHKKLSEQFKLRTIKRVY 267
V+AKDEHSH +L+EQFKL TI RV+
Sbjct: 121 VIAKDEHSHAQLAEQFKLHTISRVF 145
>R5XVE6_9CLOT (tr|R5XVE6) Pseudouridine synthase OS=Clostridium sp. CAG:571
GN=BN716_01261 PE=4 SV=1
Length = 303
Score = 153 bits (387), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 84/211 (39%), Positives = 121/211 (57%), Gaps = 29/211 (13%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
RLDS+I+ ++N +SRA +Q I+ G + VN K+S+ V SGD+I+ TI E + +
Sbjct: 14 RLDSYITKKLNDLSRANIQRLIEDGNILVNS-AKQKISYKVNSGDKIEITIPEPKKIDLK 72
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
P+DI ++IVYED ++V+NKP +VVHPA GN GTLVN I++ C
Sbjct: 73 PQDIKVEIVYEDNDIIVVNKPKGLVVHPAVGNPDGTLVNAIMNIC--------------- 117
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
S G +RPGIVHRLDK T+GLL+VAK++ +H LSEQ K R
Sbjct: 118 -------------KDSLSGIGGEVRPGIVHRLDKDTTGLLIVAKNDKAHINLSEQIKNRE 164
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
+K++Y++L G I + +GR +R
Sbjct: 165 VKKIYIALVRGNIPENEATINMPIGRSTKDR 195
>I5C7Q8_9BACT (tr|I5C7Q8) Pseudouridine synthase OS=Nitritalea halalkaliphila LW7
GN=A3SI_05257 PE=3 SV=1
Length = 349
Score = 153 bits (387), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 99/246 (40%), Positives = 137/246 (55%), Gaps = 36/246 (14%)
Query: 50 DNSDSGDGGEPRANYAGVQLEEI-VDNRIGSGKPRLDSWISTRINGISRARVQSSIKSGL 108
+ D+ GG+ R+ Y Q EI VD G R+D +++ ++ +R++VQ +I SG
Sbjct: 6 EEDDALPGGDGRSLY---QHHEIHVDK--GQQPTRIDRFLTDKVANATRSKVQQAIDSGQ 60
Query: 109 VHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV-PEDIPLDIVYEDEHLLVINKPAHMV 167
V VNG+ K ++ +K D I+ + E V PEDIPLDIV+EDE LLV+NKPA MV
Sbjct: 61 VLVNGQPT-KANYKIKPEDHIQVLLEEPPRDSTVYPEDIPLDIVFEDETLLVVNKPAGMV 119
Query: 168 VHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAYTEDSDDELNSFFQASSCEGSAASIR 227
VHPA GN SGTLVN ++HH F Q + G++ R
Sbjct: 120 VHPAHGNWSGTLVNALVHH--------------------------FQQLPTLPGNSG--R 151
Query: 228 PGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRTIKRVYVSLTIGVPTPVAGRIEVAVG 287
PG+VHR+DK TSGLLV+AK E + L+ QF +I+R Y +L G P G I+ A+G
Sbjct: 152 PGLVHRIDKDTSGLLVIAKTEDAMTSLARQFFDHSIEREYYALVWGEPQSETGTIDAAIG 211
Query: 288 RDPNNR 293
R +R
Sbjct: 212 RSAKDR 217
>A0Q073_CLONN (tr|A0Q073) Pseudouridine synthase OS=Clostridium novyi (strain NT)
GN=NT01CX_1952 PE=3 SV=1
Length = 304
Score = 153 bits (387), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 91/211 (43%), Positives = 127/211 (60%), Gaps = 30/211 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
RLD +IS SR+ Q I+ V VNG + K ++ +K+GD ++ TI E +++
Sbjct: 16 RLDVFISKCFEEKSRSYAQKLIEDKNVLVNGSI-KKSNYKLKTGDNVEVTIKEDETINIE 74
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
PEDI L+I+YEDE ++VI+KP MVVHP GN SGTLVNG+L+HC D+L
Sbjct: 75 PEDIKLNILYEDEDVIVIDKPQGMVVHPGNGNYSGTLVNGLLYHC----------DSL-- 122
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
SS G +RPGIVHR+DK TSG+LVVAK++++H LSEQ K +
Sbjct: 123 --------------SSING---DVRPGIVHRIDKDTSGVLVVAKNDNAHIILSEQLKEHS 165
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
+KR YV+L G+ G I+ +GR+P +R
Sbjct: 166 MKREYVALVEGIIKDDEGTIDEPLGRNPKDR 196
>R1CRJ4_9CLOT (tr|R1CRJ4) Ribosomal large subunit pseudouridine synthase D
OS=Clostridiaceae bacterium L21-TH-D2 GN=L21TH_0650 PE=4
SV=1
Length = 311
Score = 153 bits (387), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 91/211 (43%), Positives = 121/211 (57%), Gaps = 30/211 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
RLD++++ +N +SR+ +Q IK LV VN + V K + V GD+I + + L
Sbjct: 18 RLDTFLAQELNKVSRSFIQKLIKKNLVEVNDKKV-KPKYKVCEGDKIVVKLPAPKKLEVK 76
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
PEDIP++IVYED + V+NKP MVVHPAPGN SGTLVN +L+ Y
Sbjct: 77 PEDIPINIVYEDNDVAVVNKPQGMVVHPAPGNYSGTLVNALLY----------------Y 120
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
E+ SS G IRPGIVHR+DK TSGLL++AK++++H KLSEQ K
Sbjct: 121 LEN----------LSSINGV---IRPGIVHRIDKDTSGLLMIAKNDNAHIKLSEQLKEHN 167
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
I R+Y +L G T G I +GR P R
Sbjct: 168 ITRIYYTLVKGNITEDKGTINAPIGRHPVER 198
>F6DN26_DESRL (tr|F6DN26) Pseudouridine synthase OS=Desulfotomaculum ruminis
(strain ATCC 23193 / DSM 2154 / NCIB 8452 / DL)
GN=Desru_2373 PE=3 SV=1
Length = 309
Score = 153 bits (386), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 86/214 (40%), Positives = 120/214 (56%), Gaps = 30/214 (14%)
Query: 80 GKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSL 139
K RLD +I+ + +SR+ VQ I+ G V VN +K ++ +++GD ++ + + L
Sbjct: 13 AKCRLDIFITGQCAELSRSYVQKLIEEGRVTVNDNP-SKANYKLRAGDRVQLEVPPAEEL 71
Query: 140 RAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDA 199
R PE IPLDI YED ++V+NK MVVHPA GN SGTLVN +L+HC
Sbjct: 72 RVEPEKIPLDIYYEDADVVVVNKVRGMVVHPAEGNHSGTLVNALLYHCR----------- 120
Query: 200 LAYTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFK 259
G +RPGIVHRLDK TSGL++VAK++H+H+ L++Q K
Sbjct: 121 ------------------DLSGINGILRPGIVHRLDKDTSGLIMVAKNDHAHQCLTQQLK 162
Query: 260 LRTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
RT+ R Y +L GV G I+ +GRDP R
Sbjct: 163 DRTVTRRYTALAHGVIKEEKGTIDAPIGRDPRER 196
>J2GGM3_9BACL (tr|J2GGM3) Pseudouridine synthase OS=Brevibacillus sp. BC25
GN=PMI05_05469 PE=3 SV=1
Length = 309
Score = 153 bits (386), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 84/211 (39%), Positives = 121/211 (57%), Gaps = 30/211 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
R+D +I+ + SR++VQ+ +K G V VNG + K ++ +++ DE+ + + +
Sbjct: 22 RIDKFITLQNEDWSRSQVQAWVKEGRVTVNGEPI-KNNYKLQAEDEVTLRVPPPKEMAIQ 80
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
PE++ LDIVYED ++V+NKP +VVHPAPG+ SGTLVNG+L HC
Sbjct: 81 PEEMSLDIVYEDSDVVVVNKPRGLVVHPAPGHYSGTLVNGLLAHC--------------- 125
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
G +RPGIVHR+DK TSGLL+VAK++ +H L+EQ K T
Sbjct: 126 --------------KDLSGINGVLRPGIVHRIDKDTSGLLMVAKNDKAHMGLAEQLKAHT 171
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
+ R YV++ GV G IE +GRDP NR
Sbjct: 172 VNRKYVAIVHGVIPHEMGTIEAPIGRDPKNR 202
>C6JJ92_FUSVA (tr|C6JJ92) Pseudouridine synthase OS=Fusobacterium varium ATCC
27725 GN=FVAG_01393 PE=3 SV=1
Length = 313
Score = 153 bits (386), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 81/211 (38%), Positives = 122/211 (57%), Gaps = 29/211 (13%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
R+DS+++ I+ +R+ +Q I G V + G+ V K +K + I I E + L V
Sbjct: 20 RIDSFLNEIIDDATRSYIQKIIDGGYVEITGKKVTKSGNKLKGTEIIVVNIPEDEILNVV 79
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
PE+IPL+I+YED+ +++INK A+MVVHPA GN +GTLVN +L
Sbjct: 80 PENIPLNIIYEDKDIVIINKTANMVVHPAHGNYNGTLVNALL------------------ 121
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
+Q IRPGIVHRLDK TSG++VVAK++ +H LS+ FK +T
Sbjct: 122 -----------YQIKDLSTINGVIRPGIVHRLDKDTSGVIVVAKNDEAHSTLSDMFKEKT 170
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
+++ Y+ +T G+ +G+IE +GRDP +R
Sbjct: 171 LEKTYICITKGIFKDKSGKIETLIGRDPKDR 201
>C9LW07_SELS3 (tr|C9LW07) Pseudouridine synthase OS=Selenomonas sputigena (strain
ATCC 35185 / DSM 20758 / VPI D19B-28) GN=Selsp_0856 PE=3
SV=1
Length = 301
Score = 153 bits (386), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 87/222 (39%), Positives = 120/222 (54%), Gaps = 32/222 (14%)
Query: 72 IVDNRIGSGKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKC 131
IVD G+ RLD +++ R +SR+ +Q I+SG V VNGR K + ++ GD ++
Sbjct: 6 IVDE--GAAGERLDRFLAGRELEVSRSHIQKLIESGCVLVNGRTA-KANAKLREGDAVET 62
Query: 132 TIAELQSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPN 191
+ E + L +PEDIPLDI+YED ++VINK MVVHPA G GTLVN +LHHC
Sbjct: 63 ELPEARELEILPEDIPLDILYEDSDVIVINKARGMVVHPAAGAADGTLVNALLHHCE--- 119
Query: 192 AEFSNEDALAYTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSH 251
G IRPGIVHRLDK TSG++V AK++ +H
Sbjct: 120 --------------------------DLSGINGVIRPGIVHRLDKDTSGVMVAAKNDRAH 153
Query: 252 KKLSEQFKLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
L+EQ + +T +R+Y ++ G G I +GR P R
Sbjct: 154 VDLAEQIREKTAQRIYRAIVCGTIAEDRGEIRAPIGRHPTER 195
>D4TPJ7_9NOST (tr|D4TPJ7) Pseudouridine synthase, RluD OS=Raphidiopsis brookii D9
GN=CRD_01225 PE=4 SV=1
Length = 323
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 80/212 (37%), Positives = 122/212 (57%), Gaps = 31/212 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
RLD ++S+ I +SR+R+Q I+ G V VNG+V + + G+ ++ + +Q+ + V
Sbjct: 31 RLDRYLSSVIPDLSRSRIQDLIEQGYVQVNGKVCYSKNITLDGGEYLEVEVPPVQAAQLV 90
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHC-NLPNAEFSNEDALA 201
+DIPLDI+YEDE LL++NKPA +VVHPAPG+ GTLV+ +L HC NLP
Sbjct: 91 AQDIPLDILYEDEQLLILNKPAGLVVHPAPGHLEGTLVHALLAHCPNLP----------- 139
Query: 202 YTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLR 261
G RPGIVHRLDK T+G + +AK + ++K+L Q + +
Sbjct: 140 -------------------GIGGVQRPGIVHRLDKDTTGAIAIAKTDIAYKQLQLQLQSK 180
Query: 262 TIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
T +R Y+ + G P +G +++ +GR P R
Sbjct: 181 TARREYLGVVYGAPKSESGTMDLPIGRHPQQR 212
>R6XD98_9FIRM (tr|R6XD98) Pseudouridine synthase OS=Firmicutes bacterium CAG:313
GN=BN602_00608 PE=4 SV=1
Length = 307
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 85/211 (40%), Positives = 117/211 (55%), Gaps = 30/211 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
R+D ++ +SR +Q + LV VN ++V K SF VK+GD I + + +
Sbjct: 21 RVDKYLVEVCEDLSRTEIQEYFELKLVTVNKKIV-KPSFKVKNGDVIDIESKPDEPIDML 79
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
E+I LDIVYEDE ++V+NKP+ MVVHPAPG+T GTLVN +L+HCN
Sbjct: 80 QENIKLDIVYEDEDVIVVNKPSGMVVHPAPGHTHGTLVNALLYHCN-------------- 125
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
S +R GIVHR+DK TSGLLV K+ +HK LSEQ K +T
Sbjct: 126 ---------------SLSNIGGDVRAGIVHRIDKDTSGLLVACKNNMAHKSLSEQLKEKT 170
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
R Y+++ G + G+I +GRDP+NR
Sbjct: 171 TTRKYIAIVTGSISHNLGKINAPIGRDPDNR 201
>G5J4S5_CROWT (tr|G5J4S5) Pseudouridine synthase OS=Crocosphaera watsonii WH 0003
GN=CWATWH0003_2492 PE=3 SV=1
Length = 313
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 86/218 (39%), Positives = 118/218 (54%), Gaps = 36/218 (16%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
RLD W+S ++ ISR+R+Q I+ G + +N V +K GD ++ I E Q L
Sbjct: 13 RLDIWLSNQLTDISRSRIQKLIEQGNITLNNEVCPNKKIKLKIGDRLQVNIPEPQPLELQ 72
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
PE IPLDI+YEDE L++INK A++VVHPAPG+ +GTLV+ +L+HC
Sbjct: 73 PEPIPLDILYEDEQLIIINKSANLVVHPAPGHETGTLVHALLYHC--------------- 117
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
S+ G RPGIVHRLDK T+G +VVAK + +H+ L Q K RT
Sbjct: 118 --------------SNLAGIGGGQRPGIVHRLDKDTTGAIVVAKTDFAHQNLQFQIKNRT 163
Query: 263 IKRVYVSLTIGVPTPV-------AGRIEVAVGRDPNNR 293
KR Y+ + GV G I + +GR P +R
Sbjct: 164 AKREYLGIIYGVLNNKEDENNRDKGMINLPIGRHPVDR 201
>I3Z3Y2_BELBD (tr|I3Z3Y2) Pseudouridine synthase OS=Belliella baltica (strain DSM
15883 / CIP 108006 / LMG 21964 / BA134) GN=Belba_1325
PE=3 SV=1
Length = 346
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 88/212 (41%), Positives = 123/212 (58%), Gaps = 30/212 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAE-LQSLRA 141
R+D +++ RI +R +VQ +I +G V VNG+ V K ++ +K DEIK + + +
Sbjct: 33 RIDKFLTDRIANSTRNKVQVAIDNGHVLVNGKTV-KSNYKIKPLDEIKVYLEKPVMHSEV 91
Query: 142 VPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALA 201
+PE+IPLDI++EDE+LL+INKPA MVVHPA GN +GTLVNG++H+ N
Sbjct: 92 IPEEIPLDIIFEDEYLLIINKPAGMVVHPAHGNWTGTLVNGLVHYFN------------- 138
Query: 202 YTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLR 261
Q G++ RPG+VHR+DK TSGLLV+AK E + L+ QF
Sbjct: 139 -------------QLPELPGNSG--RPGLVHRIDKDTSGLLVIAKSEVAMTDLANQFFHH 183
Query: 262 TIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
TI R Y++L G P G I VGR +R
Sbjct: 184 TIDRTYIALVWGEPQEDEGTINAHVGRSAKDR 215
>F6CAU4_LACKZ (tr|F6CAU4) Pseudouridine synthase OS=Lactobacillus kefiranofaciens
(strain ZW3) GN=WANG_0526 PE=3 SV=1
Length = 302
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 90/222 (40%), Positives = 130/222 (58%), Gaps = 34/222 (15%)
Query: 72 IVDNRIGSGKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKC 131
+V+N G RLD +IS RI+ +SR R++ IK + VN + KVS+ +++GD+I+
Sbjct: 8 LVENEQG----RLDKYISERISDLSRTRIKELIKDKNILVNQKS-EKVSYKIQAGDKIEI 62
Query: 132 TIAELQSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPN 191
+ ++ L VPE+IPLDI+YED ++V+NKP MVVHPAPG+ TLVN +L+H
Sbjct: 63 NVPAVKPLDVVPENIPLDIIYEDNDVIVVNKPQGMVVHPAPGHPDHTLVNALLYH----- 117
Query: 192 AEFSNEDALAYTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSH 251
T+D A S EG RPGIVHR+DK TSGLL++AK+ +
Sbjct: 118 -----------TKDL---------AQSPEG----FRPGIVHRIDKDTSGLLMIAKNAKAR 153
Query: 252 KKLSEQFKLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
+ L +Q +T KR+Y ++ G G I+ +GRDP NR
Sbjct: 154 ESLEDQLAHKTNKRIYWAIVHGNFNEENGTIDAPIGRDPYNR 195
>G2ZC07_LISIP (tr|G2ZC07) Pseudouridine synthase OS=Listeria ivanovii (strain
ATCC BAA-678 / PAM 55) GN=LIV_1819 PE=3 SV=1
Length = 302
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 85/215 (39%), Positives = 122/215 (56%), Gaps = 31/215 (14%)
Query: 79 SGKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQS 138
+ + R+D ++ + G SR+ +Q +KSG + VNG + K ++ V+ GDEI + E ++
Sbjct: 12 NARERIDKAVA-ELTGKSRSAIQIMLKSGDITVNGEIA-KPNYKVQVGDEIHLEVREPET 69
Query: 139 LRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNED 198
L + EDIPLDI YED+ +LV+NKP MVVHP+ G+ SGTLVN +L HC
Sbjct: 70 LEVLAEDIPLDIYYEDKDMLVVNKPEGMVVHPSAGHASGTLVNALLFHCK---------- 119
Query: 199 ALAYTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQF 258
G IRPGIVHR+DK TSGLL+VAK++H+H+ L++Q
Sbjct: 120 -------------------DLSGINGKIRPGIVHRIDKDTSGLLMVAKNDHAHESLAKQL 160
Query: 259 KLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
K +T R Y++L G G IE +GR +R
Sbjct: 161 KDKTSDREYIALVHGDIVHQKGTIEAPIGRAKEDR 195
>R9KG71_9FIRM (tr|R9KG71) RluA family pseudouridine synthase OS=Lachnospiraceae
bacterium A2 GN=C810_02724 PE=4 SV=1
Length = 333
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 85/227 (37%), Positives = 125/227 (55%), Gaps = 32/227 (14%)
Query: 67 VQLEEIVDNRIGSGKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSG 126
VQ +++ + G RLD ++S +G SR+ +Q K G V VN + K ++ V
Sbjct: 33 VQTFQVLPEQAGE---RLDKFLSMACSGYSRSFIQKLAKDGRVLVNQKA-QKSNYKVNQK 88
Query: 127 DEIKCTIAELQSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHH 186
D ++ TI + L +PE+IPLDI+YED LL++NKP MVVHP+PG+ SGTLVN +L+H
Sbjct: 89 DCVQITIPPAEDLEVLPENIPLDILYEDSDLLIVNKPKGMVVHPSPGHFSGTLVNAVLYH 148
Query: 187 CNLPNAEFSNEDALAYTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAK 246
C S G IRPGIVHR+D T+G L++ K
Sbjct: 149 CK----------------------------DSLSGINGVIRPGIVHRIDMDTTGTLIICK 180
Query: 247 DEHSHKKLSEQFKLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
+++SH K++EQ K ++ R YV + G+ +G IE +GR P +R
Sbjct: 181 NDNSHIKIAEQIKAHSVTRRYVGIVKGIAKQESGTIESTIGRHPIDR 227
>Q2LWV4_SYNAS (tr|Q2LWV4) Pseudouridine synthase OS=Syntrophus aciditrophicus
(strain SB) GN=SYNAS_26860 PE=3 SV=1
Length = 333
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 84/211 (39%), Positives = 118/211 (55%), Gaps = 29/211 (13%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
RLD ++++ +G SRAR+Q I+SG V ++G+ + S +++GD + L +
Sbjct: 20 RLDLFLASHESGFSRARLQRLIESGRVTISGKAAIRASQKLRTGDIVMLEEPPATPLELI 79
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
P+DIPL I+YED LLV++KPA +VVHPA G+ SGTLVN +L HC
Sbjct: 80 PQDIPLSILYEDHDLLVLDKPAGLVVHPAAGHVSGTLVNALLFHCR-------------- 125
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
G +RPGIVHRLDK TSGLLVVAK + +H+ L+ QFK
Sbjct: 126 ---------------DLAGIGGVMRPGIVHRLDKDTSGLLVVAKTDAAHQGLALQFKKHQ 170
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
+ + Y +L G P G+I++ VGR P R
Sbjct: 171 VGKTYQALVYGDPREKTGQIDLPVGRHPVER 201
>D4TI16_9NOST (tr|D4TI16) Pseudouridine synthase, RluD OS=Cylindrospermopsis
raciborskii CS-505 GN=CRC_01957 PE=4 SV=1
Length = 326
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 81/212 (38%), Positives = 121/212 (57%), Gaps = 31/212 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
RLD ++S+ I +SR+R+Q I+ G V VNG+V + + G+ ++ I +Q+ + V
Sbjct: 34 RLDRYLSSVIPDLSRSRIQDLIEQGYVQVNGKVCYSKNITLDGGEYLEVEIPPVQAAQLV 93
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHC-NLPNAEFSNEDALA 201
+DIPLDI+YEDE LL++NKPA +VVHPAPG+ GTLV+ +L HC NLP
Sbjct: 94 AQDIPLDILYEDEQLLILNKPAGLVVHPAPGHLEGTLVHALLAHCPNLP----------- 142
Query: 202 YTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLR 261
G RPGIVHRLDK T+G + +AK + ++K+L Q + +
Sbjct: 143 -------------------GIGGVQRPGIVHRLDKDTTGAIAIAKTDIAYKQLQLQLQSK 183
Query: 262 TIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
+R Y+ + G P +G I++ +GR P R
Sbjct: 184 IARREYLGVVYGAPKSESGTIDLPIGRHPQQR 215
>Q4CAB3_CROWT (tr|Q4CAB3) Pseudouridine synthase OS=Crocosphaera watsonii WH 8501
GN=CwatDRAFT_6597 PE=3 SV=1
Length = 313
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 86/218 (39%), Positives = 118/218 (54%), Gaps = 36/218 (16%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
RLD W+S ++ ISR+R+Q I+ G + +N V +K GD ++ I E Q L
Sbjct: 13 RLDIWLSNQLTDISRSRIQKLIEQGNITLNNEVCPNKKIKLKIGDRLQVNIPEPQPLELQ 72
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
PE IPLDI+YEDE L++INK A++VVHPAPG+ +GTLV+ +L+HC
Sbjct: 73 PEPIPLDILYEDEQLIIINKSANLVVHPAPGHETGTLVHALLYHC--------------- 117
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
S+ G RPGIVHRLDK T+G +VVAK + +H+ L Q K RT
Sbjct: 118 --------------SNLAGIGGVQRPGIVHRLDKDTTGAIVVAKTDFAHQNLQFQIKNRT 163
Query: 263 IKRVYVSLTIGVPTPV-------AGRIEVAVGRDPNNR 293
KR Y+ + GV G I + +GR P +R
Sbjct: 164 AKREYLGIIYGVLNNEEDENNRDKGMINLPIGRHPVDR 201
>H8FQP2_RHOMO (tr|H8FQP2) Pseudouridine synthase OS=Phaeospirillum molischianum
DSM 120 GN=rluD PE=3 SV=1
Length = 347
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 87/213 (40%), Positives = 118/213 (55%), Gaps = 32/213 (15%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
RLD W++ R+ +SR+R++ I+ G V ++G + S VK G C ++ A+
Sbjct: 42 RLDKWLAMRLLDLSRSRIKGLIEDGRVSLDGPTILDPSHRVKPGQS--CRVSVPPDAPAI 99
Query: 143 PE--DIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDAL 200
PE DI L +V+EDE L+VI+KP +VVHPAPGN TLVN +L HC
Sbjct: 100 PEAQDIALTVVHEDEDLIVIDKPPGLVVHPAPGNLDFTLVNALLAHCG------------ 147
Query: 201 AYTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKL 260
S G RPGIVHRLDK TSGLLV AK + +H+ LSEQF
Sbjct: 148 ----------------ESLAGIGGVRRPGIVHRLDKDTSGLLVAAKTDAAHRGLSEQFAA 191
Query: 261 RTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
+++R Y +L GVP+P G IE +GR+P +R
Sbjct: 192 HSLERAYRALVWGVPSPSKGEIEGNIGRNPRDR 224
>A1BGX7_CHLPD (tr|A1BGX7) Pseudouridine synthase OS=Chlorobium phaeobacteroides
(strain DSM 266) GN=Cpha266_1633 PE=3 SV=1
Length = 350
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 83/211 (39%), Positives = 122/211 (57%), Gaps = 28/211 (13%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
R+D +++ ++ +R +VQ +I G V VNG+ V K ++ +KS D I+ T +
Sbjct: 35 RIDKYLTQQVENATRNKVQEAITEGRVLVNGKPV-KSNYKIKSCDLIQITFLRPPAPEMA 93
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
PE+IP+DI+YED L+V+NK A MVVHPA GN +GTL N ILHH
Sbjct: 94 PENIPIDIIYEDADLMVVNKEAGMVVHPAFGNWTGTLANAILHHIG-------------- 139
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
+ EL+ Q RPGIVHRLDK TSGL+++AK+ + ++L+ QF R
Sbjct: 140 --NDTGELDCSLQ-----------RPGIVHRLDKDTSGLIIIAKNPLALQRLARQFAQRQ 186
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
++++Y +L GVP P +G I+ +GR NR
Sbjct: 187 VEKIYHALVWGVPEPASGTIKTNIGRSKKNR 217
>B1BJ10_CLOPF (tr|B1BJ10) Pseudouridine synthase OS=Clostridium perfringens C
str. JGS1495 GN=CPC_2094 PE=3 SV=1
Length = 306
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 87/211 (41%), Positives = 125/211 (59%), Gaps = 30/211 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
R D +++ +I+G+SR +Q G + +NG+ K + + GD ++ I E + L+
Sbjct: 18 RADKFLALKIDGVSRNFIQGLFDDGKILINGKA-EKGKYKLSVGDCVEVEIPEPEELKVE 76
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
EDIPL+IVYEDE ++V+NKP MVVHPAPGN +GTLVN +LHHC
Sbjct: 77 AEDIPLNIVYEDEDVIVVNKPKGMVVHPAPGNYTGTLVNALLHHC--------------- 121
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
D+L+ G IRPGIVHR+DK TSG+LVVAK++++H+KL+EQFK +
Sbjct: 122 -----DDLS---------GINGVIRPGIVHRIDKDTSGILVVAKNDNAHQKLAEQFKDHS 167
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
IKR Y ++ G G I+ +GR +R
Sbjct: 168 IKREYYAIVEGRFKKEGGTIDAPLGRHHRDR 198
>Q8XJB1_CLOPE (tr|Q8XJB1) Pseudouridine synthase OS=Clostridium perfringens
(strain 13 / Type A) GN=CPE1850 PE=3 SV=1
Length = 306
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 87/211 (41%), Positives = 125/211 (59%), Gaps = 30/211 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
R D +++ +I+G+SR +Q G + +NG+ K + + GD ++ I E + L+
Sbjct: 18 RADKFLALKIDGVSRNFIQGLFDDGKILINGKA-EKGKYKLSVGDCVEVEIPEPEELKVE 76
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
EDIPL+IVYEDE ++V+NKP MVVHPAPGN +GTLVN +LHHC
Sbjct: 77 AEDIPLNIVYEDEDVIVVNKPKGMVVHPAPGNYTGTLVNALLHHC--------------- 121
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
D+L+ G IRPGIVHR+DK TSG+LVVAK++++H+KL+EQFK +
Sbjct: 122 -----DDLS---------GINGVIRPGIVHRIDKDTSGILVVAKNDNAHQKLAEQFKDHS 167
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
IKR Y ++ G G I+ +GR +R
Sbjct: 168 IKREYYAIVEGRFKKEGGTIDAPLGRHHRDR 198
>Q0TPA7_CLOP1 (tr|Q0TPA7) Pseudouridine synthase OS=Clostridium perfringens
(strain ATCC 13124 / NCTC 8237 / Type A) GN=CPF_2104
PE=3 SV=1
Length = 306
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 87/211 (41%), Positives = 125/211 (59%), Gaps = 30/211 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
R D +++ +I+G+SR +Q G + +NG+ K + + GD ++ I E + L+
Sbjct: 18 RADKFLALKIDGVSRNFIQGLFDDGKILINGKA-EKGKYKLSVGDCVEVEIPEPEELKVE 76
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
EDIPL+IVYEDE ++V+NKP MVVHPAPGN +GTLVN +LHHC
Sbjct: 77 AEDIPLNIVYEDEDVIVVNKPKGMVVHPAPGNYTGTLVNALLHHC--------------- 121
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
D+L+ G IRPGIVHR+DK TSG+LVVAK++++H+KL+EQFK +
Sbjct: 122 -----DDLS---------GINGVIRPGIVHRIDKDTSGILVVAKNDNAHQKLAEQFKDHS 167
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
IKR Y ++ G G I+ +GR +R
Sbjct: 168 IKREYYAIVEGRFKKEGGTIDAPLGRHHRDR 198
>H7CXP4_CLOPF (tr|H7CXP4) Pseudouridine synthase OS=Clostridium perfringens F262
GN=HA1_11056 PE=3 SV=1
Length = 306
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 87/211 (41%), Positives = 125/211 (59%), Gaps = 30/211 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
R D +++ +I+G+SR +Q G + +NG+ K + + GD ++ I E + L+
Sbjct: 18 RADKFLALKIDGVSRNFIQGLFDDGKILINGKA-EKGKYKLSVGDCVEVEIPEPEELKVE 76
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
EDIPL+IVYEDE ++V+NKP MVVHPAPGN +GTLVN +LHHC
Sbjct: 77 AEDIPLNIVYEDEDVIVVNKPKGMVVHPAPGNYTGTLVNALLHHC--------------- 121
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
D+L+ G IRPGIVHR+DK TSG+LVVAK++++H+KL+EQFK +
Sbjct: 122 -----DDLS---------GINGVIRPGIVHRIDKDTSGILVVAKNDNAHQKLAEQFKDHS 167
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
IKR Y ++ G G I+ +GR +R
Sbjct: 168 IKREYYAIVEGRFKKEGGTIDAPLGRHHRDR 198
>H1CSI5_CLOPF (tr|H1CSI5) Pseudouridine synthase OS=Clostridium perfringens
WAL-14572 GN=HMPREF9476_01506 PE=3 SV=1
Length = 306
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 87/211 (41%), Positives = 125/211 (59%), Gaps = 30/211 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
R D +++ +I+G+SR +Q G + +NG+ K + + GD ++ I E + L+
Sbjct: 18 RADKFLALKIDGVSRNFIQGLFDDGKILINGKA-EKGKYKLSVGDCVEVEIPEPEELKVE 76
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
EDIPL+IVYEDE ++V+NKP MVVHPAPGN +GTLVN +LHHC
Sbjct: 77 AEDIPLNIVYEDEDVIVVNKPKGMVVHPAPGNYTGTLVNALLHHC--------------- 121
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
D+L+ G IRPGIVHR+DK TSG+LVVAK++++H+KL+EQFK +
Sbjct: 122 -----DDLS---------GINGVIRPGIVHRIDKDTSGILVVAKNDNAHQKLAEQFKDHS 167
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
IKR Y ++ G G I+ +GR +R
Sbjct: 168 IKREYYAIVEGRFKKEGGTIDAPLGRHHRDR 198
>B1R8W0_CLOPF (tr|B1R8W0) Pseudouridine synthase OS=Clostridium perfringens B
str. ATCC 3626 GN=AC1_2338 PE=3 SV=1
Length = 306
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 87/211 (41%), Positives = 125/211 (59%), Gaps = 30/211 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
R D +++ +I+G+SR +Q G + +NG+ K + + GD ++ I E + L+
Sbjct: 18 RADKFLALKIDGVSRNFIQGLFDDGKILINGKA-EKGKYKLSVGDCVEVEIPEPEELKVE 76
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
EDIPL+IVYEDE ++V+NKP MVVHPAPGN +GTLVN +LHHC
Sbjct: 77 AEDIPLNIVYEDEDVIVVNKPKGMVVHPAPGNYTGTLVNALLHHC--------------- 121
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
D+L+ G IRPGIVHR+DK TSG+LVVAK++++H+KL+EQFK +
Sbjct: 122 -----DDLS---------GINGVIRPGIVHRIDKDTSGILVVAKNDNAHQKLAEQFKDHS 167
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
IKR Y ++ G G I+ +GR +R
Sbjct: 168 IKREYYAIVEGRFKKEGGTIDAPLGRHHRDR 198
>B1BT59_CLOPF (tr|B1BT59) Pseudouridine synthase OS=Clostridium perfringens E
str. JGS1987 GN=AC3_2380 PE=3 SV=1
Length = 306
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 87/211 (41%), Positives = 125/211 (59%), Gaps = 30/211 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
R D +++ +I+G+SR +Q G + +NG+ K + + GD ++ I E + L+
Sbjct: 18 RADKFLALKIDGVSRNFIQGLFDDGKILINGKA-EKGKYKLSVGDCVEVEIPEPEELKVE 76
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
EDIPL+IVYEDE ++V+NKP MVVHPAPGN +GTLVN +LHHC
Sbjct: 77 AEDIPLNIVYEDEDVIVVNKPKGMVVHPAPGNYTGTLVNALLHHC--------------- 121
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
D+L+ G IRPGIVHR+DK TSG+LVVAK++++H+KL+EQFK +
Sbjct: 122 -----DDLS---------GINGVIRPGIVHRIDKDTSGILVVAKNDNAHQKLAEQFKDHS 167
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
IKR Y ++ G G I+ +GR +R
Sbjct: 168 IKREYYAIVEGRFKKEGGTIDAPLGRHHRDR 198
>B1V3U6_CLOPF (tr|B1V3U6) Pseudouridine synthase OS=Clostridium perfringens D
str. JGS1721 GN=CJD_2427 PE=3 SV=1
Length = 306
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 87/211 (41%), Positives = 125/211 (59%), Gaps = 30/211 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
R D +++ +I+G+SR +Q G + +NG+ K + + GD ++ I E + L+
Sbjct: 18 RADKFLALKIDGVSRNFIQGLFDDGKILINGKA-EKGKYKLSVGDCVEVEIPEPEELKVE 76
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
EDIPL+IVYEDE ++V+NKP MVVHPAPGN +GTLVN +LHHC
Sbjct: 77 AEDIPLNIVYEDEDVIVVNKPKGMVVHPAPGNYTGTLVNALLHHC--------------- 121
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
D+L+ G IRPGIVHR+DK TSG+LVVAK++++H+KL+EQFK +
Sbjct: 122 -----DDLS---------GINGVIRPGIVHRIDKDTSGILVVAKNDNAHQKLAEQFKDHS 167
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
IKR Y ++ G G I+ +GR +R
Sbjct: 168 IKREYYAIVEGRFKKEGGTIDAPLGRHHRDR 198
>L5MQI6_9BACL (tr|L5MQI6) Pseudouridine synthase OS=Brevibacillus agri BAB-2500
GN=D478_18226 PE=3 SV=1
Length = 309
Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 83/211 (39%), Positives = 121/211 (57%), Gaps = 30/211 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
R+D +I+ + SR++VQ+ IK G V VNG + K ++ +++ DE+ + + +
Sbjct: 22 RIDKFITLQNEDWSRSQVQAWIKEGRVTVNGEPI-KSNYKLQAEDEVTLRVPPPKEMAIK 80
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
PE +PL+IVYED ++V+NKP +VVHPAPG+ SGTLVNG+L HC
Sbjct: 81 PEPMPLEIVYEDSDVVVVNKPRGLVVHPAPGHYSGTLVNGLLAHC--------------- 125
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
G +RPGIVHR+DK TSGLL+VAK++ +H L+EQ K +
Sbjct: 126 --------------KDLSGINGVLRPGIVHRIDKDTSGLLMVAKNDKAHVGLAEQLKEHS 171
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
+ R YV++ GV G I+ +GRDP NR
Sbjct: 172 VTRTYVAIVHGVIPHEMGTIDAPIGRDPKNR 202
>J2QR32_9BACL (tr|J2QR32) Pseudouridine synthase OS=Brevibacillus sp. CF112
GN=PMI08_03315 PE=3 SV=1
Length = 309
Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 83/211 (39%), Positives = 121/211 (57%), Gaps = 30/211 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
R+D +I+ + SR++VQ+ IK G V VNG + K ++ +++ DE+ + + +
Sbjct: 22 RIDKFITLQNEDWSRSQVQAWIKEGRVTVNGEPI-KSNYKLQAEDEVTLRVPPPKEMAIK 80
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
PE +PL+IVYED ++V+NKP +VVHPAPG+ SGTLVNG+L HC
Sbjct: 81 PEPMPLEIVYEDSDVVVVNKPRGLVVHPAPGHYSGTLVNGLLAHC--------------- 125
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
G +RPGIVHR+DK TSGLL+VAK++ +H L+EQ K +
Sbjct: 126 --------------KDLSGINGVLRPGIVHRIDKDTSGLLMVAKNDKAHVGLAEQLKEHS 171
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
+ R YV++ GV G I+ +GRDP NR
Sbjct: 172 VTRTYVAIVHGVIPHEMGTIDAPIGRDPKNR 202
>K2K4L1_9PROT (tr|K2K4L1) Pseudouridine synthase OS=Oceanibaculum indicum P24
GN=P24_13498 PE=3 SV=1
Length = 336
Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 84/211 (39%), Positives = 116/211 (54%), Gaps = 28/211 (13%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
RLD +++ R+ +SR+R+++ I+ G+V + V S VK G+ T+ ++
Sbjct: 28 RLDRFLAARLGDLSRSRLKALIEQGMVTASDGPVTDPSHKVKEGECFAVTLPPPEAAEPD 87
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
+DIPL +VYED+ L+VI+KPA MVVHPAPGN TLVN +L HC
Sbjct: 88 AQDIPLVVVYEDDDLIVIDKPAGMVVHPAPGNPDSTLVNALLAHCG-------------- 133
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
S G RPGIVHR+DK TSGLLV AK++ +H L+EQF +
Sbjct: 134 --------------DSLSGIGGVRRPGIVHRIDKDTSGLLVAAKNDLAHAALTEQFAAHS 179
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
I R Y++L GVP P AG I +GR +R
Sbjct: 180 IDRAYLALVWGVPVPPAGEIAGNIGRSNRDR 210
>I0AGT1_IGNAJ (tr|I0AGT1) Pseudouridine synthase OS=Ignavibacterium album (strain
DSM 19864 / JCM 16511 / NBRC 101810 / Mat9-16) GN=rluD
PE=3 SV=1
Length = 326
Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 90/221 (40%), Positives = 124/221 (56%), Gaps = 39/221 (17%)
Query: 78 GSGKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQ 137
G K RLD+++ +I +R+++Q SI++GLV VNG K +++VK GD I +Q
Sbjct: 17 GKKKERLDTFLVNQIENATRSKIQKSIEAGLVTVNGNPA-KANYSVKPGD----VIIAIQ 71
Query: 138 SLRAVPED-----IPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNA 192
+ PED IPLDIVYED++L+V+NKPA MV HPA N +GTLVN +LHH
Sbjct: 72 PISPRPEDVEPEEIPLDIVYEDDYLMVVNKPAGMVAHPAYANYTGTLVNALLHHTK---- 127
Query: 193 EFSNEDALAYTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHK 252
S G + RPGIVHR+DK TSGLLVVAKD+ +H
Sbjct: 128 -------------------------SLSGLNDAGRPGIVHRIDKDTSGLLVVAKDDFTHA 162
Query: 253 KLSEQFKLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
KL+EQF +I+R Y ++ G G I+ + R ++R
Sbjct: 163 KLAEQFSKHSIEREYHAVCWGKLPDKKGEIKTNIARSKSDR 203
>Q01Q94_SOLUE (tr|Q01Q94) Pseudouridine synthase OS=Solibacter usitatus (strain
Ellin6076) GN=Acid_7265 PE=3 SV=1
Length = 296
Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 84/211 (39%), Positives = 119/211 (56%), Gaps = 30/211 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
R+D W+ + SR+R+Q IKS V VNG V K S+ +++ D ++ A+ L A
Sbjct: 13 RIDQWLHAHLPDFSRSRIQEWIKSARVRVNGAAV-KTSYTLRAADAVEVEPADPPPLNAT 71
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
EDIPL I+YED ++ I+KPA MVVH G SGTLVN +LH
Sbjct: 72 AEDIPLRILYEDADVVAIDKPAGMVVHAGAGVHSGTLVNALLH----------------- 114
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
+ ++ G +RPGIVHRLD+ TSG+L+VAK++ +H+KL+ QF R
Sbjct: 115 ------------RFATLSGVGGPLRPGIVHRLDRFTSGVLLVAKNDAAHQKLAAQFSGRE 162
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
I++VY++L G P GRIE + RDP +R
Sbjct: 163 IEKVYLALVHGTVKPETGRIERPIARDPVHR 193
>F8C2I2_THESO (tr|F8C2I2) Pseudouridine synthase OS=Thermodesulfobacterium sp.
(strain OPB45) GN=TOPB45_0159 PE=3 SV=1
Length = 306
Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 83/211 (39%), Positives = 121/211 (57%), Gaps = 30/211 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
RLD +I ++ +SR+R+Q+ IK V VN + +K S+ +K G++IK I + +
Sbjct: 17 RLDIFIKEKLPQLSRSRIQTLIKENYVLVNFKP-SKASYKIKRGEKIKVFIPPDREIEIQ 75
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
P DIP +I+YEDE + VINKP+ +VVHPAPG+ TLV+G++
Sbjct: 76 PRDIPFEIIYEDEDIAVINKPSGIVVHPAPGHYDDTLVHGLI------------------ 117
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
+ + G IRPGIVHRLDK TSG+++VAK++ +HKKL E FK R
Sbjct: 118 -----------LKLKNLSGIGGKIRPGIVHRLDKDTSGIMLVAKNDFAHKKLVEAFKERL 166
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
I++ Y++L G T G+IE +GR P R
Sbjct: 167 IEKNYIALVYGRLTQKKGKIETFIGRHPIAR 197
>D0BKA1_9LACT (tr|D0BKA1) Pseudouridine synthase OS=Granulicatella elegans ATCC
700633 GN=HMPREF0446_00386 PE=3 SV=1
Length = 301
Score = 150 bits (379), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 86/211 (40%), Positives = 123/211 (58%), Gaps = 31/211 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
RLD ++ ++ +R+ +Q +KSG V VNG VV K ++ K GD + I E + L +
Sbjct: 17 RLDKILTKELSH-TRSVIQQWLKSGFVSVNGEVV-KANYKAKDGDHVTIQIEEEEELTVL 74
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
E+IPL+IV+EDEHLLVINKP+ MVVHP+ G+++GTLVN +L+H
Sbjct: 75 AENIPLEIVFEDEHLLVINKPSGMVVHPSKGHSTGTLVNALLYHV--------------- 119
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
D+L+ + S RPGIVHR+DK TSGLLVVAK +H LS Q +
Sbjct: 120 -----DQLSK---------GSESYRPGIVHRIDKDTSGLLVVAKTPQAHVGLSNQLMDHS 165
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
+ R YV++ G + G ++ + RDP+NR
Sbjct: 166 MTRSYVAIVEGSFEHITGTVDAPLARDPHNR 196
>M7XEJ6_9BACT (tr|M7XEJ6) Ribosomal large subunit pseudouridine synthase D
OS=Mariniradius saccharolyticus AK6 GN=C943_00587 PE=4
SV=1
Length = 347
Score = 150 bits (379), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 90/223 (40%), Positives = 128/223 (57%), Gaps = 32/223 (14%)
Query: 72 IVDNRIGSGKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKC 131
IVD G G R+D +++ ++ +R +VQ++I +G V VNG+ K ++ VK DEIK
Sbjct: 25 IVDK--GQGLTRIDKFLTEKVAHATRNKVQTAIDAGNVLVNGQP-TKANYRVKPFDEIKV 81
Query: 132 TIAEL-QSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLP 190
I + +PE IPLDIV+ED++LL+INKPA MVVHPA GN +GTLVNG++++ N
Sbjct: 82 FIDRPPRDTEVLPEPIPLDIVFEDDYLLIINKPAGMVVHPAHGNWTGTLVNGLVYYFN-- 139
Query: 191 NAEFSNEDALAYTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHS 250
Q + G+ RPG+VHR+DK TSGLLV+AK E +
Sbjct: 140 ------------------------QLPTLPGNTG--RPGLVHRIDKDTSGLLVIAKSEAA 173
Query: 251 HKKLSEQFKLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
L++QF I R Y++L G P +G + VGR P +R
Sbjct: 174 MTDLAKQFFHHHIDRTYIALVWGEPEADSGTVRAHVGRSPKDR 216
>K6EGP6_SPIPL (tr|K6EGP6) RluA family pseudouridine synthase OS=Arthrospira
platensis str. Paraca GN=APPUASWS_19177 PE=4 SV=1
Length = 308
Score = 150 bits (379), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 85/225 (37%), Positives = 121/225 (53%), Gaps = 30/225 (13%)
Query: 69 LEEIVDNRIGSGKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDE 128
+E I + + G + RLD W+S R+ +SR+R+Q+ I SG V VN V+ GD
Sbjct: 3 IELICEEQDGENQ-RLDRWLSERVQQLSRSRLQALISSGHVWVNNSPCTSKKATVQIGDR 61
Query: 129 IKCTIAELQSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCN 188
I+ I L +IPLDI+YEDE LL+INKPA +VVHPAPG+ + TLVN +L HC
Sbjct: 62 IQVEIPPAIPLELKATNIPLDILYEDEELLIINKPAGLVVHPAPGHANDTLVNALLAHCE 121
Query: 189 LPNAEFSNEDALAYTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDE 248
+ G RPGIVHRLDK T+G + +AK +
Sbjct: 122 -----------------------------TLAGIGGVQRPGIVHRLDKDTTGAIAIAKTD 152
Query: 249 HSHKKLSEQFKLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
H+H+ L Q + +T +R Y+ + GVP +G I+ +GR ++R
Sbjct: 153 HAHQHLQAQIQAKTARRQYLGIIYGVPKTTSGVIDQPIGRHHSDR 197
>D4ZTU2_SPIPL (tr|D4ZTU2) Probable pseudouridine synthase OS=Arthrospira
platensis NIES-39 GN=NIES39_J01550 PE=4 SV=1
Length = 308
Score = 150 bits (379), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 85/225 (37%), Positives = 121/225 (53%), Gaps = 30/225 (13%)
Query: 69 LEEIVDNRIGSGKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDE 128
+E I + + G + RLD W+S R+ +SR+R+Q+ I SG V VN V+ GD
Sbjct: 3 IELICEEQDGENQ-RLDRWLSERVQQLSRSRLQALISSGHVWVNNSPCTSKKATVQIGDR 61
Query: 129 IKCTIAELQSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCN 188
I+ I L +IPLDI+YEDE LL+INKPA +VVHPAPG+ + TLVN +L HC
Sbjct: 62 IQVEIPPAIPLELKATNIPLDILYEDEELLIINKPAGLVVHPAPGHANDTLVNALLAHCE 121
Query: 189 LPNAEFSNEDALAYTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDE 248
+ G RPGIVHRLDK T+G + +AK +
Sbjct: 122 -----------------------------TLAGIGGVQRPGIVHRLDKDTTGAIAIAKTD 152
Query: 249 HSHKKLSEQFKLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
H+H+ L Q + +T +R Y+ + GVP +G I+ +GR ++R
Sbjct: 153 HAHQHLQAQIQAKTARRQYLGIIYGVPKTTSGVIDQPIGRHHSDR 197
>D9S300_THEOJ (tr|D9S300) Pseudouridine synthase OS=Thermosediminibacter oceani
(strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P)
GN=Toce_1015 PE=3 SV=1
Length = 307
Score = 150 bits (379), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 85/215 (39%), Positives = 120/215 (55%), Gaps = 30/215 (13%)
Query: 80 GKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSL 139
K RLD ++S IN +SR+ +Q I+ G V VN R+V K + +K GD I I + L
Sbjct: 14 AKKRLDVFLSGVINDLSRSYIQKGIEEGWVKVNERIV-KPHYKLKKGDVIVADIPSPKPL 72
Query: 140 RAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDA 199
PE+IPLDI++ED ++V+NKP MVV+PAPGN SGTLVN +L+H
Sbjct: 73 SLEPENIPLDIIHEDRDIIVVNKPRGMVVYPAPGNYSGTLVNALLYHT------------ 120
Query: 200 LAYTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFK 259
G +RPGIVHRLDK TSG++VVAK++ +H++L+ QFK
Sbjct: 121 -----------------KDLSGINGVMRPGIVHRLDKDTSGVIVVAKNDMAHRELAMQFK 163
Query: 260 LRTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNRT 294
+ +K+ Y+++ G IE +GR P R
Sbjct: 164 NKLVKKTYLAVVWGNIPEDRATIEAPIGRHPAKRV 198
>B3QSN0_CHLT3 (tr|B3QSN0) Pseudouridine synthase OS=Chloroherpeton thalassium
(strain ATCC 35110 / GB-78) GN=Ctha_1619 PE=3 SV=1
Length = 346
Score = 150 bits (379), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 88/245 (35%), Positives = 130/245 (53%), Gaps = 32/245 (13%)
Query: 53 DSGDGGEPRANYAGVQLEE----IVDNRIGSGKPRLDSWISTRINGISRARVQSSIKSGL 108
DS + + A++ +Q EE + + R+D +++ ++ +R +VQ +I+
Sbjct: 2 DSEELLDDEASFESLQSEEKKTLTLQVAPNQARERIDKFLTRQVENATRNKVQEAIEESR 61
Query: 109 VHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAVPEDIPLDIVYEDEHLLVINKPAHMVV 168
V VNG+ + K ++ V DEI + PE+IPLDIV+EDE LLVINKPA MVV
Sbjct: 62 VLVNGKPI-KSNYKVCPNDEIFVIFTHPPAPDLEPENIPLDIVFEDEFLLVINKPAGMVV 120
Query: 169 HPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAYTEDSDDELNSFFQASSCEGSAASIRP 228
HPA N +GTL +L+H Q E ++RP
Sbjct: 121 HPAYANWTGTLAGAVLYHT---------------------------QNRLSETGKEALRP 153
Query: 229 GIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRTIKRVYVSLTIGVPTPVAGRIEVAVGR 288
GIVHRLDK TSGL+VVAKD+ +H L++QF RT +++Y +L G P P +G I+ + R
Sbjct: 154 GIVHRLDKDTSGLIVVAKDDATHYALAKQFAERTTEKIYTALVWGCPKPPSGTIQTNIWR 213
Query: 289 DPNNR 293
+R
Sbjct: 214 SKRDR 218
>B9MS18_CALBD (tr|B9MS18) Pseudouridine synthase OS=Caldicellulosiruptor bescii
(strain ATCC BAA-1888 / DSM 6725 / Z-1320) GN=Athe_1372
PE=3 SV=1
Length = 300
Score = 150 bits (378), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 95/211 (45%), Positives = 121/211 (57%), Gaps = 29/211 (13%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
RLD ++S ++ +R+ VQ I+ G V VN R V K ++ VKSGD IK I E + L V
Sbjct: 9 RLDRYLSEALSK-TRSFVQKIIEEGNVWVNQRQVLKPAYKVKSGDIIKVVIPEPKQLSLV 67
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
+DI +++VYEDEHL VINKP MVVHP GN TLVN +LH +F
Sbjct: 68 AQDIDIEVVYEDEHLSVINKPRGMVVHPGAGNFENTLVNALLH-------KFKG------ 114
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
+ SS G IRPGIVHRLDK TSGLLVVAK + +H KLSE K
Sbjct: 115 ------------RLSSINGV---IRPGIVHRLDKDTSGLLVVAKTDEAHIKLSEALKSHQ 159
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
IKR+Y ++ GV +G ++ +GR P NR
Sbjct: 160 IKRIYYAICEGVLKEDSGVVDAPIGRHPVNR 190
>G7V9W8_THELD (tr|G7V9W8) Pseudouridine synthase OS=Thermovirga lienii (strain
ATCC BAA-1197 / DSM 17291 / Cas60314) GN=Tlie_0935 PE=3
SV=1
Length = 329
Score = 150 bits (378), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 87/211 (41%), Positives = 124/211 (58%), Gaps = 30/211 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
RLD ++S +I+ SR+ VQ IK LV V G K S ++SG EI I +++
Sbjct: 35 RLDVFLSEKIDR-SRSYVQKLIKENLVFVKGFSTIKPSTRLQSGMEIVVKIPVAEAITLT 93
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
PE +P D++YEDE +++INKPA + VHP+PG+ GTLV G+LH P FS E+
Sbjct: 94 PEYVPFDVLYEDEDIIIINKPAGVAVHPSPGHWKGTLVQGLLH--RYPEL-FSGEN---- 146
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
S+RPGIVHRLD GTSGL+V+AK +H+++S FK R+
Sbjct: 147 ----------------------SLRPGIVHRLDLGTSGLMVIAKHIKAHERMSMLFKTRS 184
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
+K+ Y++L G P V+G I++ +GRD NR
Sbjct: 185 VKKEYLALVWGCPRKVSGLIDMPIGRDSRNR 215
>Q8ER39_OCEIH (tr|Q8ER39) Pseudouridine synthase OS=Oceanobacillus iheyensis
(strain DSM 14371 / JCM 11309 / KCTC 3954 / HTE831)
GN=OB1486 PE=3 SV=1
Length = 303
Score = 150 bits (378), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 87/215 (40%), Positives = 124/215 (57%), Gaps = 30/215 (13%)
Query: 79 SGKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQS 138
GK R+D ++ + SR+++Q I GLV VNG V K ++ GD + I E +
Sbjct: 12 QGKTRVDKLLTQLLADQSRSQIQGWIDEGLVEVNGVSV-KANYKCVEGDALTWEIPETKP 70
Query: 139 LRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNED 198
L PE+IPLD+VYED ++VINKP MVVHP+ G+ +GTLV+ +L+HC
Sbjct: 71 LILEPENIPLDVVYEDSDVIVINKPKGMVVHPSAGHQTGTLVHALLYHC----------- 119
Query: 199 ALAYTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQF 258
D+L+ G RPGIVHR+DK TSGLLVVAK++ +H+KLS+Q
Sbjct: 120 ---------DDLS---------GINGIERPGIVHRIDKDTSGLLVVAKNDVAHQKLSDQL 161
Query: 259 KLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
+ + +KR YV++ G G I+ +GRDP +R
Sbjct: 162 QQKQLKRKYVAIVHGEIGHDTGLIDAPIGRDPKDR 196
>C5URZ4_CLOBO (tr|C5URZ4) Pseudouridine synthase OS=Clostridium botulinum E1 str.
'BoNT E Beluga' GN=CLO_1294 PE=3 SV=1
Length = 302
Score = 150 bits (378), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 85/211 (40%), Positives = 124/211 (58%), Gaps = 30/211 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
R+D ++S +NG SR+ +Q I+ + VN +++ K ++ +K+ DEI T+ E+++L+
Sbjct: 16 RIDKYLSEMLNGKSRSFIQGLIEKESIKVNDKLI-KSNYKLKACDEIVITMPEVETLKVE 74
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
EDI LDI+YED+ ++V+NK MVVHPAPGN +GTLVN +L HC
Sbjct: 75 SEDIDLDILYEDKDVIVVNKEQGMVVHPAPGNYNGTLVNALLFHCT-------------- 120
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
SS G IRPGIVHR+DK TSG+LV+AK++ SH KL+ Q K +
Sbjct: 121 ------------DLSSINGV---IRPGIVHRIDKDTSGVLVIAKNDESHNKLAAQLKDHS 165
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
+ R Y +L G +G I+ +GRD NR
Sbjct: 166 MNREYYALVEGRFKNDSGVIDKPLGRDKKNR 196
>J6H7Y5_9FIRM (tr|J6H7Y5) Pseudouridine synthase OS=Mogibacterium sp. CM50
GN=HMPREF1152_1268 PE=3 SV=1
Length = 351
Score = 150 bits (378), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 88/211 (41%), Positives = 125/211 (59%), Gaps = 30/211 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
RLDS+I + +SR+ Q+ I+ G V V+GR V K + VK+G+ I I E +S+ A
Sbjct: 64 RLDSYIGEATD-LSRSYAQNLIEDGQVSVSGRQVAK-KYKVKAGESITINIPEAKSIDAA 121
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
PE+IP+DIVYED+ ++V+ KP MVVHPA GN GTLVN I++HC D+L
Sbjct: 122 PENIPIDIVYEDDDVIVVEKPRGMVVHPAAGNPDGTLVNAIMYHCG---------DSL-- 170
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
SS G +IRPGIVHR+DK TSGLL++AK++ +H+ L+ Q K+ +
Sbjct: 171 --------------SSING---AIRPGIVHRIDKDTSGLLMIAKNDKAHESLTAQLKVHS 213
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
+ R Y++L I+ +GRD NR
Sbjct: 214 VTREYIALVFDNIRKDKLTIDAPIGRDDINR 244
>G2PTT6_9FIRM (tr|G2PTT6) Pseudouridine synthase OS=Caldicellulosiruptor
lactoaceticus 6A GN=Calla_0752 PE=3 SV=1
Length = 300
Score = 150 bits (378), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 95/211 (45%), Positives = 120/211 (56%), Gaps = 29/211 (13%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
RLD ++S ++ +R+ VQ I+ G V VN V K ++ VKSGD IK I E + L V
Sbjct: 9 RLDKYLSEALSK-TRSFVQKIIEEGNVWVNQTQVLKPAYKVKSGDIIKVVIPEPKQLSLV 67
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
+DI +++VYEDEHL VINKP MVVHP GN TLVN +LH +FS
Sbjct: 68 AQDIDIEVVYEDEHLAVINKPCGMVVHPGTGNFENTLVNALLH-------KFSG------ 114
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
+ SS G IRPGIVHRLDK TSGLL+VAK + +H KLSE K
Sbjct: 115 ------------RLSSINGV---IRPGIVHRLDKDTSGLLIVAKTDEAHIKLSEALKSHQ 159
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
IKR+Y ++ GV +G I +GR P NR
Sbjct: 160 IKRIYYAICEGVLKEDSGVINAPIGRHPVNR 190
>L0FW74_ECHVK (tr|L0FW74) Pseudouridine synthase OS=Echinicola vietnamensis
(strain DSM 17526 / LMG 23754 / KMM 6221) GN=Echvi_0642
PE=3 SV=1
Length = 364
Score = 149 bits (377), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 84/217 (38%), Positives = 124/217 (57%), Gaps = 30/217 (13%)
Query: 78 GSGKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTI-AEL 136
G R+D +++ ++ ++R +VQ +I +G V +NG K ++ +K GD I + E
Sbjct: 46 GQAATRVDKFLTDKVANVTRNKVQQAIDNGQVKINGSNT-KANYKIKPGDVITVVLEMEP 104
Query: 137 QSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSN 196
+ +PE + LDIV+ED+HLLV+NKPA MVVHPA GN +GTLVNG+++H
Sbjct: 105 RETEVLPEKLDLDIVHEDDHLLVVNKPAGMVVHPAYGNWTGTLVNGLVYH---------- 154
Query: 197 EDALAYTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSE 256
F Q G++ RPG+VHR+DK TSGLLV+AK E + L++
Sbjct: 155 ----------------FSQLPEMPGNSG--RPGLVHRIDKDTSGLLVIAKSEQAMTGLAK 196
Query: 257 QFKLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
QF +I+R Y++L G P AG I+ VGR +R
Sbjct: 197 QFFDHSIERTYIALVWGEPQEDAGTIDAHVGRSARDR 233
>C0GJQ1_9FIRM (tr|C0GJQ1) Pseudouridine synthase OS=Dethiobacter alkaliphilus AHT
1 GN=DealDRAFT_2710 PE=3 SV=1
Length = 312
Score = 149 bits (377), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 81/211 (38%), Positives = 119/211 (56%), Gaps = 30/211 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
RLD +S + ++RARVQ I V V+G+ K ++ +++G+ ++ T+ E++
Sbjct: 16 RLDVAVSRHVEELTRARVQKLIAEDYVQVDGKP-QKANYRLRAGETVEVTVPEVKPAEIA 74
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
E I LDI+YED+ +LV+NKP +V+HPA G+ GTLVN +LHHC
Sbjct: 75 AEKIDLDILYEDQDVLVLNKPKGLVIHPAAGHAGGTLVNALLHHC--------------- 119
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
D+L+ G RPGIVHRLDK TSG++VVAK++ +H LS QFK +
Sbjct: 120 -----DDLS---------GIGGEARPGIVHRLDKDTSGVMVVAKNDRAHLSLSRQFKAHS 165
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
+ R YV++ G P G I+ A+ R P R
Sbjct: 166 VTREYVAIVHGEPAVEQGTIDAAIARHPKER 196
>D4YSY4_9LACO (tr|D4YSY4) Pseudouridine synthase OS=Lactobacillus amylolyticus
DSM 11664 GN=rluD2 PE=3 SV=1
Length = 302
Score = 149 bits (377), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 86/213 (40%), Positives = 126/213 (59%), Gaps = 30/213 (14%)
Query: 81 KPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLR 140
K RLD +++ +I+ +SR RV+ I GL+ VN +V K S+ VK GD I+ T+ ++ L
Sbjct: 13 KGRLDKYLADKIDDLSRTRVKELIDDGLILVNQKV-EKASYKVKDGDAIEVTVPAVKPLD 71
Query: 141 AVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDAL 200
+PE+IPLDI+YED ++V+NKP MVVHPA G+ TLVN +L+H
Sbjct: 72 VIPENIPLDIIYEDNDVIVVNKPQGMVVHPAAGHPDHTLVNALLYH-------------- 117
Query: 201 AYTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKL 260
T+D ASS EG RPGIVHR+DK TSGLL++AK+ + L +Q
Sbjct: 118 --TKDL---------ASSPEG----FRPGIVHRIDKDTSGLLMIAKNSQVRESLEDQLAH 162
Query: 261 RTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
+T KR+Y+++ G G I+ + R+P++R
Sbjct: 163 KTNKRLYLAIVHGNFAEEEGTIDAPIARNPHDR 195
>D5GXR7_LACCS (tr|D5GXR7) Pseudouridine synthase OS=Lactobacillus crispatus
(strain ST1) GN=rluD2 PE=3 SV=1
Length = 303
Score = 149 bits (377), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 87/217 (40%), Positives = 128/217 (58%), Gaps = 30/217 (13%)
Query: 77 IGSGKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAEL 136
+ + K RLD ++S +I +SR RV+ +K + VNG+V KVS+ +++GD+I+ I +
Sbjct: 9 VKNEKGRLDKFVSEQIPDLSRTRVKELVKDQNILVNGKV-EKVSYKIQAGDKIEVNIPAV 67
Query: 137 QSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSN 196
+ L +PE+IPLDIVYED+ ++V+NKP MVVHPAPG+ TLVN +L+H
Sbjct: 68 KPLDVIPENIPLDIVYEDDDVIVVNKPQGMVVHPAPGHPDHTLVNALLYHTK-------- 119
Query: 197 EDALAYTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSE 256
ALA S EG RPGIVHR+DK TSGLL++AK + + L +
Sbjct: 120 --ALA---------------QSPEG----FRPGIVHRIDKDTSGLLMIAKTAKARESLED 158
Query: 257 QFKLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
Q +T KR+Y ++ G G I+ +GR+P +R
Sbjct: 159 QLAHKTNKRLYWAIVHGNFAEENGVIDAPIGRNPYDR 195
>K1MCA0_9LACO (tr|K1MCA0) Pseudouridine synthase OS=Lactobacillus crispatus
FB049-03 GN=HMPREF9250_01028 PE=3 SV=1
Length = 303
Score = 149 bits (377), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 87/217 (40%), Positives = 128/217 (58%), Gaps = 30/217 (13%)
Query: 77 IGSGKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAEL 136
+ + K RLD ++S +I +SR RV+ +K + VNG+V KVS+ +++GD+I+ I +
Sbjct: 9 VKNEKGRLDKFVSEQIPDLSRTRVKELVKDQNILVNGKV-EKVSYKIQAGDKIEVNIPAV 67
Query: 137 QSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSN 196
+ L +PE+IPLDIVYED+ ++V+NKP MVVHPAPG+ TLVN +L+H
Sbjct: 68 KPLDVIPENIPLDIVYEDDDVIVVNKPQGMVVHPAPGHPDHTLVNALLYHTK-------- 119
Query: 197 EDALAYTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSE 256
ALA S EG RPGIVHR+DK TSGLL++AK + + L +
Sbjct: 120 --ALA---------------QSPEG----FRPGIVHRIDKDTSGLLMIAKTAKARESLED 158
Query: 257 QFKLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
Q +T KR+Y ++ G G I+ +GR+P +R
Sbjct: 159 QLAHKTNKRLYWAIVHGNFAEENGVIDAPIGRNPYDR 195
>E3R3F5_9LACO (tr|E3R3F5) Pseudouridine synthase OS=Lactobacillus crispatus
CTV-05 GN=LBKG_00823 PE=3 SV=1
Length = 303
Score = 149 bits (377), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 87/217 (40%), Positives = 128/217 (58%), Gaps = 30/217 (13%)
Query: 77 IGSGKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAEL 136
+ + K RLD ++S +I +SR RV+ +K + VNG+V KVS+ +++GD+I+ I +
Sbjct: 9 VKNEKGRLDKFVSEQIPDLSRTRVKELVKDQNILVNGKV-EKVSYKIQAGDKIEVNIPAV 67
Query: 137 QSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSN 196
+ L +PE+IPLDIVYED+ ++V+NKP MVVHPAPG+ TLVN +L+H
Sbjct: 68 KPLDVIPENIPLDIVYEDDDVIVVNKPQGMVVHPAPGHPDHTLVNALLYHTK-------- 119
Query: 197 EDALAYTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSE 256
ALA S EG RPGIVHR+DK TSGLL++AK + + L +
Sbjct: 120 --ALA---------------QSPEG----FRPGIVHRIDKDTSGLLMIAKTAKARESLED 158
Query: 257 QFKLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
Q +T KR+Y ++ G G I+ +GR+P +R
Sbjct: 159 QLAHKTNKRLYWAIVHGNFAEENGVIDAPIGRNPYDR 195
>D4FDJ1_9LACO (tr|D4FDJ1) Pseudouridine synthase OS=Lactobacillus crispatus 214-1
GN=HMPREF0891_1850 PE=3 SV=1
Length = 303
Score = 149 bits (377), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 87/217 (40%), Positives = 128/217 (58%), Gaps = 30/217 (13%)
Query: 77 IGSGKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAEL 136
+ + K RLD ++S +I +SR RV+ +K + VNG+V KVS+ +++GD+I+ I +
Sbjct: 9 VKNEKGRLDKFVSEQIPDLSRTRVKELVKDQNILVNGKV-EKVSYKIQAGDKIEVNIPAV 67
Query: 137 QSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSN 196
+ L +PE+IPLDIVYED+ ++V+NKP MVVHPAPG+ TLVN +L+H
Sbjct: 68 KPLDVIPENIPLDIVYEDDDVIVVNKPQGMVVHPAPGHPDHTLVNALLYHTK-------- 119
Query: 197 EDALAYTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSE 256
ALA S EG RPGIVHR+DK TSGLL++AK + + L +
Sbjct: 120 --ALA---------------QSPEG----FRPGIVHRIDKDTSGLLMIAKTAKARESLED 158
Query: 257 QFKLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
Q +T KR+Y ++ G G I+ +GR+P +R
Sbjct: 159 QLAHKTNKRLYWAIVHGNFAEENGVIDAPIGRNPYDR 195
>C7Y7E0_9LACO (tr|C7Y7E0) Pseudouridine synthase OS=Lactobacillus crispatus
MV-1A-US GN=HMPREF0507_01797 PE=3 SV=1
Length = 303
Score = 149 bits (377), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 87/217 (40%), Positives = 128/217 (58%), Gaps = 30/217 (13%)
Query: 77 IGSGKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAEL 136
+ + K RLD ++S +I +SR RV+ +K + VNG+V KVS+ +++GD+I+ I +
Sbjct: 9 VKNEKGRLDKFVSEQIPDLSRTRVKELVKDQNILVNGKV-EKVSYKIQAGDKIEVNIPAV 67
Query: 137 QSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSN 196
+ L +PE+IPLDIVYED+ ++V+NKP MVVHPAPG+ TLVN +L+H
Sbjct: 68 KPLDVIPENIPLDIVYEDDDVIVVNKPQGMVVHPAPGHPDHTLVNALLYHTK-------- 119
Query: 197 EDALAYTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSE 256
ALA S EG RPGIVHR+DK TSGLL++AK + + L +
Sbjct: 120 --ALA---------------QSPEG----FRPGIVHRIDKDTSGLLMIAKTAKARESLED 158
Query: 257 QFKLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
Q +T KR+Y ++ G G I+ +GR+P +R
Sbjct: 159 QLAHKTNKRLYWAIVHGNFAEENGVIDAPIGRNPYDR 195
>C7XHD2_9LACO (tr|C7XHD2) Pseudouridine synthase OS=Lactobacillus crispatus
125-2-CHN GN=HMPREF5045_00518 PE=3 SV=1
Length = 303
Score = 149 bits (377), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 87/217 (40%), Positives = 128/217 (58%), Gaps = 30/217 (13%)
Query: 77 IGSGKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAEL 136
+ + K RLD ++S +I +SR RV+ +K + VNG+V KVS+ +++GD+I+ I +
Sbjct: 9 VKNEKGRLDKFVSEQIPDLSRTRVKELVKDQNILVNGKV-EKVSYKIQAGDKIEVNIPAV 67
Query: 137 QSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSN 196
+ L +PE+IPLDIVYED+ ++V+NKP MVVHPAPG+ TLVN +L+H
Sbjct: 68 KPLDVIPENIPLDIVYEDDDVIVVNKPQGMVVHPAPGHPDHTLVNALLYHTK-------- 119
Query: 197 EDALAYTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSE 256
ALA S EG RPGIVHR+DK TSGLL++AK + + L +
Sbjct: 120 --ALA---------------QSPEG----FRPGIVHRIDKDTSGLLMIAKTAKARESLED 158
Query: 257 QFKLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
Q +T KR+Y ++ G G I+ +GR+P +R
Sbjct: 159 QLAHKTNKRLYWAIVHGNFAEENGVIDAPIGRNPYDR 195
>C2KFB3_9LACO (tr|C2KFB3) Pseudouridine synthase OS=Lactobacillus crispatus
JV-V01 GN=HMPREF0506_1538 PE=3 SV=1
Length = 303
Score = 149 bits (377), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 87/217 (40%), Positives = 128/217 (58%), Gaps = 30/217 (13%)
Query: 77 IGSGKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAEL 136
+ + K RLD ++S +I +SR RV+ +K + VNG+V KVS+ +++GD+I+ I +
Sbjct: 9 VKNEKGRLDKFVSEQIPDLSRTRVKELVKDQNILVNGKV-EKVSYKIQAGDKIEVNIPAV 67
Query: 137 QSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSN 196
+ L +PE+IPLDIVYED+ ++V+NKP MVVHPAPG+ TLVN +L+H
Sbjct: 68 KPLDVIPENIPLDIVYEDDDVIVVNKPQGMVVHPAPGHPDHTLVNALLYHTK-------- 119
Query: 197 EDALAYTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSE 256
ALA S EG RPGIVHR+DK TSGLL++AK + + L +
Sbjct: 120 --ALA---------------QSPEG----FRPGIVHRIDKDTSGLLMIAKTAKARESLED 158
Query: 257 QFKLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
Q +T KR+Y ++ G G I+ +GR+P +R
Sbjct: 159 QLAHKTNKRLYWAIVHGNFAEENGVIDAPIGRNPYDR 195
>J7IUX7_DESMD (tr|J7IUX7) Pseudouridine synthase OS=Desulfosporosinus meridiei
(strain ATCC BAA-275 / DSM 13257 / NCIMB 13706 / S10)
GN=Desmer_3816 PE=3 SV=1
Length = 323
Score = 149 bits (377), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 84/211 (39%), Positives = 124/211 (58%), Gaps = 31/211 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
RLD + T + SR+ VQ I V VNG + K ++ ++ GD +K TI + A
Sbjct: 38 RLDLGV-TEVLEKSRSFVQGLITKEWVLVNG-LARKSNYKIRQGDLVKVTIPAPRESSAT 95
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
PE+IPL+I+Y+DE +LV+NKP MVVHPAPG +GT+VN +L+HC+
Sbjct: 96 PENIPLEIIYQDEDVLVVNKPQGMVVHPAPGAWTGTMVNALLYHCD-------------- 141
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
+ G +RPGIVHR+DK TSG+LVVAK++ SH+ L+ Q K +
Sbjct: 142 ---------------NLSGINGVLRPGIVHRIDKDTSGILVVAKNDFSHQGLAAQLKAHS 186
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
++R Y++L GV T +G ++ +GRDP++R
Sbjct: 187 MERKYLALVHGVMTEPSGTVDAPIGRDPSDR 217
>D2BIX0_DEHSV (tr|D2BIX0) Pseudouridine synthase OS=Dehalococcoides sp. (strain
VS) GN=rluA PE=3 SV=1
Length = 302
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 90/212 (42%), Positives = 120/212 (56%), Gaps = 32/212 (15%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
RLD +I+ + +SR+ +Q+ I SG V VNG+ K S +K+GD I I+
Sbjct: 16 RLDKYIAQKETDLSRSFIQALIDSGHVQVNGKTA-KPSLKLKNGDTITIEISPETPPELK 74
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDAL-A 201
EDIPL+I+++D+ LL+INKP + VHPAPG+ TL+NG+L AL
Sbjct: 75 AEDIPLEIIFQDKDLLLINKPPGLTVHPAPGHPDHTLINGVL--------------ALEP 120
Query: 202 YTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLR 261
ED DD L RPGIVHRLDK TSGLL+VAK+ + LS QFK R
Sbjct: 121 KMEDFDDPL----------------RPGIVHRLDKDTSGLLLVAKNRETLANLSAQFKER 164
Query: 262 TIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
T+++ Y++L G P G IE +GRDP NR
Sbjct: 165 TVRKYYLTLVKGELHPAEGFIEAPLGRDPQNR 196
>R6WBS0_9FIRM (tr|R6WBS0) Pseudouridine synthase RluA family OS=Dorea sp. CAG:317
GN=BN605_01864 PE=4 SV=1
Length = 303
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 84/222 (37%), Positives = 126/222 (56%), Gaps = 32/222 (14%)
Query: 72 IVDNRIGSGKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKC 131
+V+N G RLD +++ +SR+R+Q +K GL+ VN + V K S+ + GD ++
Sbjct: 6 VVENEEGM---RLDRYLAEEYEELSRSRIQKLVKDGLIKVNTKPV-KASYRLLLGDRVEI 61
Query: 132 TIAELQSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPN 191
T+ E + VPEDIPLDI+YED+ ++V+NKP MVVHPA G+ SGTLVN +++HC
Sbjct: 62 TVPEAKEPDIVPEDIPLDILYEDQDVIVVNKPKQMVVHPALGHYSGTLVNALMYHCK--- 118
Query: 192 AEFSNEDALAYTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSH 251
D+L+ G +RPGIVHR+D T+G LVV K++ +H
Sbjct: 119 ----------------DQLS---------GINGDLRPGIVHRIDMDTTGSLVVCKNDLAH 153
Query: 252 KKLSEQFKLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
+ LSEQ K ++ R Y ++ G G + +GR P +R
Sbjct: 154 QALSEQLKEHSMHREYEAIVHGNIKEEEGVVNAPIGRHPTDR 195
>D0DGI5_9LACO (tr|D0DGI5) Pseudouridine synthase OS=Lactobacillus crispatus
MV-3A-US GN=HMPREF0508_00734 PE=3 SV=1
Length = 303
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 87/217 (40%), Positives = 128/217 (58%), Gaps = 30/217 (13%)
Query: 77 IGSGKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAEL 136
+ + K RLD ++S +I +SR RV+ +K + VNG+V KVS+ +++GD+I+ I +
Sbjct: 9 VKNEKGRLDKFVSEQIPDLSRTRVKELVKDQNILVNGKV-EKVSYKIQAGDKIEVNIPAV 67
Query: 137 QSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSN 196
+ L +PE+IPLDIVYED+ ++V+NKP MVVHPAPG+ TLVN +L+H
Sbjct: 68 KPLDVIPENIPLDIVYEDDDVIVVNKPQGMVVHPAPGHPDHTLVNALLYHSK-------- 119
Query: 197 EDALAYTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSE 256
ALA S EG RPGIVHR+DK TSGLL++AK + + L +
Sbjct: 120 --ALA---------------QSPEG----FRPGIVHRIDKDTSGLLMIAKTAKARESLED 158
Query: 257 QFKLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
Q +T KR+Y ++ G G I+ +GR+P +R
Sbjct: 159 QLAHKTNKRLYWAIVHGNFAEENGVIDAPIGRNPYDR 195
>R7M6F3_9CLOT (tr|R7M6F3) Pseudouridine synthase OS=Clostridium sp. CAG:914
GN=BN809_00400 PE=4 SV=1
Length = 300
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 88/221 (39%), Positives = 125/221 (56%), Gaps = 31/221 (14%)
Query: 73 VDNRIGSGKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCT 132
V N I + R+D ++ +++ ISR ++Q I + VNG+ V K S+ V+ D I+C
Sbjct: 3 VINVIDNDGIRIDKYLLDKLD-ISRNKIQKLINDNNILVNGKSV-KASYIVRVDDLIECD 60
Query: 133 IAELQSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNA 192
+ + +PEDIPLDIVYED+ LLV+NKP+ MVVHPA GN S TLVN +++HCN
Sbjct: 61 FEYKEKIDILPEDIPLDIVYEDDDLLVVNKPSGMVVHPAVGNYSHTLVNALMYHCN---- 116
Query: 193 EFSNEDALAYTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHK 252
S G IRPGIVHR+D TSGLL+VAK++ +H
Sbjct: 117 ----------------------NLSQVNGV---IRPGIVHRIDADTSGLLLVAKNDMAHV 151
Query: 253 KLSEQFKLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
L++Q +++KR Y++L GV I+ +GRD NR
Sbjct: 152 DLAKQISEKSVKREYITLVDGVIKEDTATIDAPIGRDVKNR 192
>A4XKS8_CALS8 (tr|A4XKS8) Pseudouridine synthase OS=Caldicellulosiruptor
saccharolyticus (strain ATCC 43494 / DSM 8903)
GN=Csac_1928 PE=3 SV=1
Length = 300
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 95/211 (45%), Positives = 120/211 (56%), Gaps = 29/211 (13%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
RLD ++S ++ +R+ VQ I+ G V VN V K ++ VKSGD IK I E + L V
Sbjct: 9 RLDKYLSEALSK-TRSFVQKIIEEGNVWVNQSQVLKPAYKVKSGDIIKVVIPEPKQLSLV 67
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
+DI +++VYEDEHL VINKP MVVHP GN TLVN +LH +FS
Sbjct: 68 AQDIDIEVVYEDEHLAVINKPRGMVVHPGAGNFENTLVNALLH-------KFSG------ 114
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
+ SS G IRPGIVHRLDK TSGLL+VAK + +H KLSE K
Sbjct: 115 ------------RLSSINGV---IRPGIVHRLDKDTSGLLIVAKTDEAHIKLSEALKSHQ 159
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
IKR+Y ++ GV +G I +GR P NR
Sbjct: 160 IKRIYYAICEGVLKEDSGVINAPIGRHPVNR 190
>R8W565_9CLOT (tr|R8W565) RluA family pseudouridine synthase OS=Butyricicoccus
pullicaecorum 1.2 GN=HMPREF1526_00391 PE=4 SV=1
Length = 308
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 84/212 (39%), Positives = 127/212 (59%), Gaps = 30/212 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHV-NGRVVNKVSFNVKSGDEIKCTIAELQSLRA 141
R+D+++ +++GI+R+ VQ+ I+ G V + +G+ V K ++ V +GDE+ + E QS+
Sbjct: 16 RIDAFVCEQLDGITRSMVQNWIEQGHVTLASGKAVKK-NYKVSAGDEVIVQVPEPQSVEI 74
Query: 142 VPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALA 201
PE+IP+DIVYEDE ++V+NK MVVHPA GN +GTLVN +++HC
Sbjct: 75 EPENIPIDIVYEDEDIIVVNKARGMVVHPAVGNWNGTLVNALMYHCG------------- 121
Query: 202 YTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLR 261
D L+ G IRPGIVHR+DK TSGLLVVAK++ +H+ L+EQ
Sbjct: 122 ------DRLS---------GINGEIRPGIVHRIDKDTSGLLVVAKNDLAHQSLAEQIACH 166
Query: 262 TIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
+ R Y ++ +G P G I+ +GR +R
Sbjct: 167 SAAREYQAIVVGAPREDQGTIDQPIGRHKIDR 198
>Q67Q15_SYMTH (tr|Q67Q15) Pseudouridine synthase OS=Symbiobacterium thermophilum
(strain T / IAM 14863) GN=STH1243 PE=3 SV=1
Length = 304
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 121/216 (56%), Gaps = 31/216 (14%)
Query: 79 SGKPRLDSWISTRIN-GISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQ 137
G PR+D +++ R G+SR+R+Q+ I G V +NG + K V GD I + + +
Sbjct: 10 EGHPRIDVFLAGRPEIGLSRSRIQALIDEGQVTLNG-AMPKARQAVNPGDVIVVRVPDPE 68
Query: 138 SLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNE 197
+ VPEDIPLDIVYEDE +LV+NK +VVHPA G+ +GTLV+ +L
Sbjct: 69 PMELVPEDIPLDIVYEDEDILVVNKQRGLVVHPAAGHWTGTLVHALL------------- 115
Query: 198 DALAYTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQ 257
D D+L EG +RPGIVHRLDK T+GLLVVAK E + L EQ
Sbjct: 116 -------DKVDDL---------EGIGGELRPGIVHRLDKDTTGLLVVAKSERAMASLQEQ 159
Query: 258 FKLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
+ ++RVY +L G P GRIE +GR P +R
Sbjct: 160 IRDHMVQRVYWALVHGNSMPDTGRIEAPIGRHPRDR 195
>F2LZV7_LACAL (tr|F2LZV7) Pseudouridine synthase OS=Lactobacillus amylovorus
(strain GRL 1118) GN=LAB52_05865 PE=3 SV=1
Length = 302
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 86/211 (40%), Positives = 127/211 (60%), Gaps = 30/211 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
RLD ++S +I +SR RV+ I+ + VN + KVS+ V++GD+I+ + ++ L V
Sbjct: 15 RLDKFVSEQIPDLSRTRVKELIQDDNILVNQKK-EKVSYKVQAGDQIEVNVPAVKPLDVV 73
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
PEDIPLDIVYED+ ++V+NKP MVVHPAPG++ TLVN +L+H
Sbjct: 74 PEDIPLDIVYEDDDVIVVNKPQGMVVHPAPGHSDHTLVNALLYH---------------- 117
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
T+D A S EG RPGIVHR+DK TSGLL++AK+ + + L +Q +T
Sbjct: 118 TKDL---------AKSPEG----FRPGIVHRIDKDTSGLLMIAKNAKARESLEDQLAHKT 164
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
KR+Y ++ G + G I+ +GR+P +R
Sbjct: 165 NKRIYWAIVHGNFSEENGTIDAPIGRNPYDR 195
>F0TF63_LACA3 (tr|F0TF63) Pseudouridine synthase OS=Lactobacillus acidophilus
(strain 30SC) GN=LAC30SC_06135 PE=3 SV=1
Length = 302
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 86/211 (40%), Positives = 127/211 (60%), Gaps = 30/211 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
RLD ++S +I +SR RV+ I+ + VN + KVS+ V++GD+I+ + ++ L V
Sbjct: 15 RLDKFVSEQIPDLSRTRVKELIQDDNILVNQKK-EKVSYKVQAGDQIEVNVPAVKPLDVV 73
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
PEDIPLDIVYED+ ++V+NKP MVVHPAPG++ TLVN +L+H
Sbjct: 74 PEDIPLDIVYEDDDVIVVNKPQGMVVHPAPGHSDHTLVNALLYH---------------- 117
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
T+D A S EG RPGIVHR+DK TSGLL++AK+ + + L +Q +T
Sbjct: 118 TKDL---------AKSPEG----FRPGIVHRIDKDTSGLLMIAKNAKARESLEDQLAHKT 164
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
KR+Y ++ G + G I+ +GR+P +R
Sbjct: 165 NKRIYWAIVHGNFSEENGTIDAPIGRNPYDR 195
>E4SJG2_LACAR (tr|E4SJG2) Pseudouridine synthase OS=Lactobacillus amylovorus
(strain GRL 1112) GN=LA2_06480 PE=3 SV=1
Length = 302
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 86/211 (40%), Positives = 127/211 (60%), Gaps = 30/211 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
RLD ++S +I +SR RV+ I+ + VN + KVS+ V++GD+I+ + ++ L V
Sbjct: 15 RLDKFVSEQIPDLSRTRVKELIQDDNILVNQKK-EKVSYKVQAGDQIEVNVPAVKPLDVV 73
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
PEDIPLDIVYED+ ++V+NKP MVVHPAPG++ TLVN +L+H
Sbjct: 74 PEDIPLDIVYEDDDVIVVNKPQGMVVHPAPGHSDHTLVNALLYH---------------- 117
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
T+D A S EG RPGIVHR+DK TSGLL++AK+ + + L +Q +T
Sbjct: 118 TKDL---------AKSPEG----FRPGIVHRIDKDTSGLLMIAKNAKARESLEDQLAHKT 164
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
KR+Y ++ G + G I+ +GR+P +R
Sbjct: 165 NKRIYWAIVHGNFSEENGTIDAPIGRNPYDR 195
>A8YVI7_LACH4 (tr|A8YVI7) Pseudouridine synthase OS=Lactobacillus helveticus
(strain DPC 4571) GN=lhv_1258 PE=3 SV=1
Length = 303
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 90/221 (40%), Positives = 130/221 (58%), Gaps = 34/221 (15%)
Query: 73 VDNRIGSGKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCT 132
V+N G RLD +IS +I +SR RV+ +K + VN +V KVS+ +++GD+I+
Sbjct: 9 VENEYG----RLDKFISEQIPDLSRTRVKELVKEKEILVNHKV-EKVSYKIQAGDKIEIN 63
Query: 133 IAELQSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNA 192
+ ++ L VPE+IPLDIVYEDE ++V+NKP MVVHPAPG+ TLVN +L+H
Sbjct: 64 VPAVKPLDVVPENIPLDIVYEDEVVIVVNKPQGMVVHPAPGHPDHTLVNALLYH------ 117
Query: 193 EFSNEDALAYTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHK 252
T+D A S EG RPGIVHR+DK TSGLL++AK+ + +
Sbjct: 118 ----------TQDL---------AQSPEG----FRPGIVHRIDKDTSGLLMIAKNAKARE 154
Query: 253 KLSEQFKLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
L +Q +T KR+Y ++ G G I+ +GR+P +R
Sbjct: 155 SLEDQLAHKTNKRIYWAIVHGDFGEENGVIDAPIGRNPYDR 195
>R5ZFK4_9LACO (tr|R5ZFK4) Pseudouridine synthase OS=Lactobacillus amylovorus
CAG:719 GN=BN764_01467 PE=4 SV=1
Length = 302
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 86/211 (40%), Positives = 127/211 (60%), Gaps = 30/211 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
RLD ++S +I +SR RV+ I+ + VN + KVS+ V++GD+I+ + ++ L V
Sbjct: 15 RLDKFVSEQIPDLSRTRVKELIQDDNILVNQKK-EKVSYKVQAGDQIEVNVPAVKPLDVV 73
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
PEDIPLDIVYED+ ++V+NKP MVVHPAPG++ TLVN +L+H
Sbjct: 74 PEDIPLDIVYEDDDVIVVNKPQGMVVHPAPGHSDHTLVNALLYH---------------- 117
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
T+D A S EG RPGIVHR+DK TSGLL++AK+ + + L +Q +T
Sbjct: 118 TKDL---------AKSPEG----FRPGIVHRIDKDTSGLLMIAKNAKAREALEDQLAHKT 164
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
KR+Y ++ G + G I+ +GR+P +R
Sbjct: 165 NKRIYWAIVHGNFSEENGTIDAPIGRNPYDR 195
>K2MLB9_9PROT (tr|K2MLB9) Pseudouridine synthase OS=Thalassospira xiamenensis M-5
= DSM 17429 GN=TH3_08699 PE=3 SV=1
Length = 333
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 89/213 (41%), Positives = 117/213 (54%), Gaps = 30/213 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
RLD ++T SR+R++S I++G + +N + K+S+ VKSGD I + +
Sbjct: 24 RLDKVLATAWPEQSRSRIKSLIENGHLLLNDTPIAKMSYKVKSGDRFALEIPPAVAADPI 83
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
E I LDI+YED+ LLVINKPA MVVHPA GN SGTLVN +L HC
Sbjct: 84 AEKIALDILYEDDDLLVINKPAGMVVHPAAGNESGTLVNALLAHC--------------- 128
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFK--L 260
S G RPGIVHRLDK TSG +VVAK++ +H+ LS F
Sbjct: 129 -------------GDSLSGIGGVKRPGIVHRLDKDTSGAMVVAKNDATHRALSTLFSEDK 175
Query: 261 RTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
I+R Y+++ GVP + G IE +GR P NR
Sbjct: 176 ENIERAYIAVVWGVPRQIEGVIEGNIGRSPRNR 208
>F0NSN2_LACHH (tr|F0NSN2) Pseudouridine synthase OS=Lactobacillus helveticus
(strain H10) GN=LBHH_0901 PE=3 SV=1
Length = 310
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 89/221 (40%), Positives = 130/221 (58%), Gaps = 34/221 (15%)
Query: 73 VDNRIGSGKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCT 132
V+N G RLD ++S +I +SR RV+ +K + VN +V KVS+ +++GD+I+
Sbjct: 16 VENEYG----RLDKFVSEQIPDLSRTRVKELVKEKEILVNHKV-EKVSYKIQAGDKIEIN 70
Query: 133 IAELQSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNA 192
+ ++ L VPE+IPLDIVYEDE ++V+NKP MVVHPAPG+ TLVN +L+H
Sbjct: 71 VPAVKPLDVVPENIPLDIVYEDEDVIVVNKPQGMVVHPAPGHPDHTLVNALLYH------ 124
Query: 193 EFSNEDALAYTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHK 252
T+D A S EG RPGIVHR+DK TSGLL++AK+ + +
Sbjct: 125 ----------TQDL---------AQSPEG----FRPGIVHRIDKDTSGLLMIAKNAKARE 161
Query: 253 KLSEQFKLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
L +Q +T KR+Y ++ G G I+ +GR+P +R
Sbjct: 162 SLEDQLAHKTNKRIYWAIVHGNFGEENGVIDAPIGRNPYDR 202
>R7BFB7_9FIRM (tr|R7BFB7) Pseudouridine synthase OS=Firmicutes bacterium CAG:341
GN=BN614_00700 PE=4 SV=1
Length = 313
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 88/226 (38%), Positives = 122/226 (53%), Gaps = 31/226 (13%)
Query: 68 QLEEIVDNRIGSGKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGD 127
Q++ IV+N R+D +++ I+ ++R+ + I G V V G+ K S+ K D
Sbjct: 4 QIDLIVENDFSG--VRIDKFLAENIDFLTRSMIAGLIDDGNVSVFGKKAQK-SYKCKVND 60
Query: 128 EIKCTIAELQSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHC 187
EI I ++L E+IPLDIVYED+ LLV+NKP MVVHPAPGN GTLVN +L+HC
Sbjct: 61 EITVIIPAPKALETKAENIPLDIVYEDDDLLVVNKPKGMVVHPAPGNYEGTLVNALLYHC 120
Query: 188 NLPNAEFSNEDALAYTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKD 247
SS G IRPGIVHR+DK TSGLL+VAK+
Sbjct: 121 ----------------------------GSSLSGINGVIRPGIVHRIDKDTSGLLIVAKN 152
Query: 248 EHSHKKLSEQFKLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
+ SH L++Q K + R Y ++ G G + +GR+P +R
Sbjct: 153 DFSHLHLAKQIKEHSFYRAYQAVVYGNIKEDKGTVNEPIGRNPKDR 198
>B1RKZ3_CLOPF (tr|B1RKZ3) Pseudouridine synthase OS=Clostridium perfringens NCTC
8239 GN=AC7_2104 PE=3 SV=1
Length = 306
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 86/211 (40%), Positives = 124/211 (58%), Gaps = 30/211 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
R D +++ +I G+SR +Q G + +NG+ K + + GD ++ I E + L+
Sbjct: 18 RADKFLALKIEGVSRNFIQGLFDDGKILINGKA-EKGKYKLSVGDCVEVEIPEPEELKVE 76
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
EDIPL+IVYEDE ++V+NKP MVVHPAPGN +GTLVN +L+HC
Sbjct: 77 AEDIPLNIVYEDEDVIVVNKPKGMVVHPAPGNYTGTLVNALLYHC--------------- 121
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
D+L+ G IRPGIVHR+DK TSG+LVVAK++++H+KL+EQFK +
Sbjct: 122 -----DDLS---------GINGVIRPGIVHRIDKDTSGILVVAKNDNAHQKLAEQFKDHS 167
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
IKR Y ++ G G I+ +GR +R
Sbjct: 168 IKREYYAIVEGRFKKEGGTIDAPLGRHHRDR 198
>Q0SRX4_CLOPS (tr|Q0SRX4) Pseudouridine synthase OS=Clostridium perfringens
(strain SM101 / Type A) GN=CPR_1818 PE=3 SV=1
Length = 306
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 85/211 (40%), Positives = 125/211 (59%), Gaps = 30/211 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
R D +++ +I+G+SR +Q G + +NG+ K + + GD ++ I E + L+
Sbjct: 18 RADKFLALKIDGVSRNFIQGLFDDGKILINGKA-EKGKYKLSVGDCVEVEIPEPEELKVE 76
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
EDIPL+I+YEDE ++V+NKP MVVHPAPGN +GTLVN +L+HC
Sbjct: 77 AEDIPLNIIYEDEDVIVVNKPKGMVVHPAPGNYTGTLVNALLYHC--------------- 121
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
D+L+ G IRPGIVHR+DK TSG+LVVAK++++H+KL+EQFK +
Sbjct: 122 -----DDLS---------GINGVIRPGIVHRIDKDTSGILVVAKNDNAHQKLAEQFKDHS 167
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
IKR Y ++ G G I+ +GR +R
Sbjct: 168 IKREYYAIVEGRFKKEGGTIDAPLGRHHRDR 198
>G0IUQ0_CYCMS (tr|G0IUQ0) Pseudouridine synthase OS=Cyclobacterium marinum
(strain ATCC 25205 / DSM 745) GN=Cycma_1688 PE=3 SV=1
Length = 344
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 89/218 (40%), Positives = 123/218 (56%), Gaps = 32/218 (14%)
Query: 78 GSGKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAE-L 136
G R+D +I+ ++ +R +VQ SI SG+V VNG VV K ++ +K+GD I + +
Sbjct: 26 GQSSIRIDKFITDKLAYATRNKVQQSITSGIVQVNGEVV-KANYKIKAGDLITFAMEKSR 84
Query: 137 QSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHC-NLPNAEFS 195
+ V ED+PLDI YED+HL+V+ KPA MVVHPA GN +GTLVN + ++ NLP
Sbjct: 85 KETEVVAEDLPLDIRYEDDHLMVVYKPAGMVVHPAHGNWTGTLVNALAYYFKNLP----- 139
Query: 196 NEDALAYTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLS 255
E S RPG+VHR+DK TSGLLV+AK E + L+
Sbjct: 140 ------------------------ELPGNSGRPGLVHRIDKDTSGLLVIAKSERAMTHLA 175
Query: 256 EQFKLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
+QF +I R YV+L G P+ G I V +GR +R
Sbjct: 176 KQFFDHSISRSYVALVWGEPSDEEGTINVPIGRGVKDR 213
>K2LLZ7_9RHIZ (tr|K2LLZ7) Pseudouridine synthase OS=Nitratireductor pacificus
pht-3B GN=NA2_11440 PE=3 SV=1
Length = 338
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 83/217 (38%), Positives = 124/217 (57%), Gaps = 33/217 (15%)
Query: 83 RLDSWISTRI-NGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRA 141
RLD W+S ++ + +SR+R+Q+ I++G V G V + V +G++ + E +
Sbjct: 20 RLDLWLSGQLGDAVSRSRLQALIRAGAVTRAGSPVTEPKHRVAAGEQYALVVPEAEPAEP 79
Query: 142 VPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALA 201
+PE++PL+I+ ED+ L+V+NKPA +VVHPAPGN SGTLVN +L+HC D LA
Sbjct: 80 LPENLPLEILCEDDALIVVNKPAGLVVHPAPGNWSGTLVNALLYHCG---------DTLA 130
Query: 202 YTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQF--- 258
G RPGIVHRLD+ TSG++V AK + +H+ LSE F
Sbjct: 131 -------------------GIGGVRRPGIVHRLDRDTSGVMVAAKTDQAHRALSEAFADH 171
Query: 259 -KLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNRT 294
+ ++R Y +L P AG ++ +GRDP +RT
Sbjct: 172 GRSGDLERAYSALVWDAPDRWAGTVDAPLGRDPRSRT 208
>K8DXA5_9FIRM (tr|K8DXA5) Pseudouridine synthase OS=Desulfotomaculum
hydrothermale Lam5 = DSM 18033 GN=ylyB PE=3 SV=1
Length = 307
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 83/214 (38%), Positives = 118/214 (55%), Gaps = 30/214 (14%)
Query: 80 GKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSL 139
K RLD +++ ISR+ +Q I +V V+ R V K + +K+G+++ + L
Sbjct: 13 AKTRLDVFLAGVCQDISRSYIQKLIDEAMVTVDDRPV-KANHKLKAGEKVCLIVPPAAEL 71
Query: 140 RAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDA 199
+ PE+IPLDI YED HL+V+NKP MVVHPA G SGTLVN +L+HC
Sbjct: 72 KVEPENIPLDIYYEDSHLIVVNKPRGMVVHPADGTVSGTLVNALLYHCQ----------- 120
Query: 200 LAYTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFK 259
G +RPGIVHRLDK TSGLL+VAK++++H+ L++Q K
Sbjct: 121 ------------------DLSGINGVMRPGIVHRLDKDTSGLLMVAKNDNAHQALAQQLK 162
Query: 260 LRTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
RT+ R Y++L G + +GRDP +R
Sbjct: 163 DRTVTRRYLALVHNNLKEEQGTVNAPIGRDPRDR 196
>E2CJK4_9RHOB (tr|E2CJK4) Pseudouridine synthase OS=Roseibium sp. TrichSKD4
GN=rluD PE=3 SV=1
Length = 341
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 84/215 (39%), Positives = 118/215 (54%), Gaps = 32/215 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
RLD+ ++ +I +SR R+Q+ IK G V V+GR + + V G + T+ E +
Sbjct: 28 RLDAVLAGQIASLSRNRIQTLIKGGEVTVDGRKIVEPKHRVNEGQTLTLTLPEPEDPDPK 87
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
E+IPL I+YED+HL+V++KPA +VVHP GN +GTLVN ++HHC
Sbjct: 88 GENIPLSIIYEDDHLIVVDKPAGLVVHPGAGNLTGTLVNALIHHC--------------- 132
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQF---- 258
S G + RPGIVHR+DK TSGLLVVAK + +H+ LSEQF
Sbjct: 133 -------------GDSLSGIGSVKRPGIVHRIDKDTSGLLVVAKTDQAHQGLSEQFADHG 179
Query: 259 KLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
K ++R Y +L G P+ + G I + R NR
Sbjct: 180 KTGPLERAYSALVWGAPSSLKGTINANLARSQANR 214
>E4Q1I4_CALOW (tr|E4Q1I4) Pseudouridine synthase OS=Caldicellulosiruptor
owensensis (strain ATCC 700167 / DSM 13100 / OL)
GN=Calow_1160 PE=3 SV=1
Length = 300
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 93/211 (44%), Positives = 121/211 (57%), Gaps = 29/211 (13%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
RLD ++S ++ +R+ +Q I+ G V VN V K ++ V++GD IK I E + L V
Sbjct: 9 RLDRYLSEALSK-TRSFIQKIIEEGNVWVNQTQVFKPAYKVRNGDIIKVVIPEPKQLSLV 67
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
+DI +D+VYEDEHL VINKP MVVHP GN TLVN +LH +FS
Sbjct: 68 AQDIDIDVVYEDEHLAVINKPRGMVVHPGAGNFENTLVNALLH-------KFSG------ 114
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
+ SS G IRPGIVHRLDK TSGLLVVAK + +H KLSE K
Sbjct: 115 ------------RLSSINGV---IRPGIVHRLDKDTSGLLVVAKTDEAHIKLSEALKSHQ 159
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
IKR+Y ++ GV +G ++ +GR P NR
Sbjct: 160 IKRIYYAICEGVLKEDSGVVDAPIGRHPVNR 190
>K9PV31_9CYAN (tr|K9PV31) Ribosomal large subunit pseudouridine synthase D
OS=Leptolyngbya sp. PCC 7376 GN=Lepto7376_0330 PE=4 SV=1
Length = 308
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 79/211 (37%), Positives = 117/211 (55%), Gaps = 28/211 (13%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
RLD W+S +++ +SR+R+Q I G V +N +V + + GD ++ TI SL
Sbjct: 17 RLDQWLSLQLDDLSRSRIQKLIGQGQVAINEKVCTTKKYKLSGGDRLQVTIPAPVSLELQ 76
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
PE + LDI++ED+H L++NK A++VVHPAPG+ +GTLV+G+L HC D LA
Sbjct: 77 PEAMDLDILFEDDHFLIVNKAANVVVHPAPGHYTGTLVHGLLAHCG---------DRLA- 126
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
G RPGIVHRLDK T+G + +AK + +H+ L Q K +T
Sbjct: 127 ------------------GIGGVQRPGIVHRLDKDTTGAIAIAKTDQAHQHLQAQIKAKT 168
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
+R Y+ + G P AG +E + R +R
Sbjct: 169 ARREYLGVVYGCPQQPAGIVEAPIDRHKIDR 199
>R0EJL0_CAUCE (tr|R0EJL0) Ribosomal large subunit pseudouridine synthase D
OS=Caulobacter crescentus OR37 GN=OR37_01955 PE=4 SV=1
Length = 344
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 80/211 (37%), Positives = 116/211 (54%), Gaps = 29/211 (13%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
RLD ++ +SRAR+Q+ I G + ++G+ V S ++G + ++ +
Sbjct: 41 RLDKALAPLFPALSRARLQALIGEGRLSLDGQPVADASRKARAGTYV-LSVPPPAAAEPE 99
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
PE IPL ++YED+HL+V++KPA M HPAPG+ +GTLVN +LHHC
Sbjct: 100 PEAIPLTVLYEDQHLIVVDKPAGMAAHPAPGSWTGTLVNALLHHCG-------------- 145
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
S G +RPGIVHRLDK TSG++V AK + +H+ LS F
Sbjct: 146 --------------DSLSGVGGVVRPGIVHRLDKDTSGVMVAAKSDAAHQGLSRLFSTHD 191
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
I R+Y++LT G P+P A IE +GR P +R
Sbjct: 192 IDRLYIALTRGAPSPAASTIETRIGRSPGDR 222
>J3XA58_LACHE (tr|J3XA58) Pseudouridine synthase OS=Lactobacillus helveticus
R0052 GN=R0052_05270 PE=3 SV=1
Length = 303
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 86/211 (40%), Positives = 126/211 (59%), Gaps = 30/211 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
RLD ++S +I +SR RV+ +K + VN +V KVS+ +++GD+I+ + ++ L V
Sbjct: 15 RLDKFVSEQIPDLSRTRVKELVKEKEILVNHKV-EKVSYKIQAGDKIEINVPAVKPLDVV 73
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
PE+IPLDIVYEDE ++V+NKP MVVHPAPG+ TLVN +L+H
Sbjct: 74 PENIPLDIVYEDEDVIVVNKPQGMVVHPAPGHPDHTLVNTLLYH---------------- 117
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
T+D A S EG RPGIVHR+DK TSGLL++AK+ + + L +Q +T
Sbjct: 118 TQDL---------AQSSEG----FRPGIVHRIDKDTSGLLMIAKNAKARESLEDQLAHKT 164
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
KR+Y ++ G G I+ +GR+P +R
Sbjct: 165 NKRIYWAIVHGNFGEENGVIDAPIGRNPYDR 195
>Q3B4S5_PELLD (tr|Q3B4S5) Pseudouridine synthase OS=Pelodictyon luteolum (strain
DSM 273) GN=Plut_0783 PE=3 SV=1
Length = 354
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 82/211 (38%), Positives = 117/211 (55%), Gaps = 28/211 (13%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
R+D +++ ++ +R +VQ +I+ G V VNG+ V K ++ VKS D I+ T +
Sbjct: 39 RIDQYLTRQVENATRNKVQEAIEDGRVLVNGKSV-KSNYRVKSCDSIEMTFLRPPAPELA 97
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
PEDIP+DIVYED L+V+NK MVVHPA GN +GTL N ILHH
Sbjct: 98 PEDIPIDIVYEDSDLMVVNKAPGMVVHPAFGNWTGTLANAILHH---------------- 141
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
F + E +RPGIVHRLDK TSGL++VA++ + +L+ QF R
Sbjct: 142 -----------FGTDAEELETDELRPGIVHRLDKDTSGLIIVARNPTALHRLARQFADRK 190
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
+ ++Y ++ GVP P G I +GR +R
Sbjct: 191 VSKLYTAILWGVPEPQEGTIHTNIGRSRRDR 221
>K9RQ04_SYNP3 (tr|K9RQ04) Pseudouridine synthase OS=Synechococcus sp. (strain
ATCC 27167 / PCC 6312) GN=Syn6312_0816 PE=3 SV=1
Length = 317
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 87/227 (38%), Positives = 120/227 (52%), Gaps = 31/227 (13%)
Query: 68 QLEEIVDNRIGSGKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGD 127
+L I+ + + RLD + ISR+R Q I+ G V VNG +K GD
Sbjct: 9 ELPHILTFQAPAAFSRLDQCLRQAQPEISRSRWQQLIEQGQVQVNGVTTYLKKLPIKVGD 68
Query: 128 EIKCTIAELQSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHC 187
I+ + + Q+ VPE IPLD++YED+ +++INKP +VVHPAPG+ SGTLV+ +L HC
Sbjct: 69 VIEAELPKPQACELVPEAIPLDVLYEDDQIILINKPVGLVVHPAPGHDSGTLVHALLAHC 128
Query: 188 -NLPNAEFSNEDALAYTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAK 246
+LP G +RPGIVHRLDK TSG+++VAK
Sbjct: 129 PDLP------------------------------GIGGQLRPGIVHRLDKDTSGVMMVAK 158
Query: 247 DEHSHKKLSEQFKLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
E + + L Q K RT +R Y+ L GVP G I +GR P +R
Sbjct: 159 TESALQHLQAQIKARTARREYLGLVQGVPPTPIGTINAPIGRHPTHR 205
>K1M7W5_9LACO (tr|K1M7W5) Pseudouridine synthase OS=Lactobacillus crispatus
FB077-07 GN=HMPREF9249_01551 PE=3 SV=1
Length = 303
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 86/217 (39%), Positives = 128/217 (58%), Gaps = 30/217 (13%)
Query: 77 IGSGKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAEL 136
+ + K RLD +++ +I +SR RV+ +K + VNG+V KVS+ +++GD+I+ I +
Sbjct: 9 VKNEKGRLDKFVAEQIPDLSRTRVKELVKDQNILVNGKV-EKVSYKIQAGDKIEVNIPAV 67
Query: 137 QSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSN 196
+ L +PE+IPLDIVYED+ ++V+NKP MVVHPAPG+ TLVN +L+H
Sbjct: 68 KPLDVIPENIPLDIVYEDDDVIVVNKPQGMVVHPAPGHPDHTLVNALLYHTK-------- 119
Query: 197 EDALAYTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSE 256
ALA S EG RPGIVHR+DK TSGLL++AK + + L +
Sbjct: 120 --ALA---------------QSPEG----FRPGIVHRIDKDTSGLLMIAKTAKARESLED 158
Query: 257 QFKLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
Q +T KR+Y ++ G G I+ +GR+P +R
Sbjct: 159 QLAHKTNKRLYWAIVHGNFAEENGVIDAPIGRNPYDR 195
>Q8KCW1_CHLTE (tr|Q8KCW1) Pseudouridine synthase OS=Chlorobium tepidum (strain
ATCC 49652 / DSM 12025 / TLS) GN=rluD PE=3 SV=1
Length = 329
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 84/211 (39%), Positives = 121/211 (57%), Gaps = 28/211 (13%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
R+D +++ ++ +R +VQ +I+ V VNG+ V K ++ +KS D I T +
Sbjct: 13 RIDRYLTQQVENATRNKVQKAIEEQRVLVNGKPV-KSNYRIKSCDHIHITFLRPPAPELA 71
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
PEDIP+ I+YED+ L+VI+K A MVVHPA GN +GTL N ILHH
Sbjct: 72 PEDIPISILYEDDDLMVIDKEAGMVVHPAFGNWTGTLANAILHHLG-------------- 117
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
+D+DD +RPGIVHRLDK TSGL++VAK+ + KL+ QF R
Sbjct: 118 -KDADDL------------DKTEMRPGIVHRLDKDTSGLIIVAKNPVALHKLATQFARRQ 164
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
+++VY ++ GVP P +G I+ +GR NR
Sbjct: 165 VEKVYKAIVWGVPNPPSGTIKTNIGRSHKNR 195
>F4A2P9_MAHA5 (tr|F4A2P9) Pseudouridine synthase OS=Mahella australiensis (strain
DSM 15567 / CIP 107919 / 50-1 BON) GN=Mahau_1031 PE=3
SV=1
Length = 304
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 85/211 (40%), Positives = 118/211 (55%), Gaps = 30/211 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
RLD++++ +R+ +Q+ IK+G + VNG+ + K + +K GD IK + EL+ +
Sbjct: 16 RLDTFLAESFEQWTRSHIQNLIKNGNITVNGQHI-KSGYKLKDGDIIKVEVPELRPIDIQ 74
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
PEDIPL+I+YEDE ++VINKP MVVHPA GN S TLVN +L HC
Sbjct: 75 PEDIPLNILYEDEDIIVINKPQGMVVHPAAGNYSATLVNALLAHC--------------- 119
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
G IRPGIVHR+DK TSG+LVVAK++ +H L++Q K +T
Sbjct: 120 --------------KDLSGINGEIRPGIVHRIDKDTSGVLVVAKNDMAHVALAQQIKEKT 165
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
R YV+L G G I + R P +R
Sbjct: 166 AIRKYVALLEGDIKEDTGVINAPIARHPTDR 196
>B2TS14_CLOBB (tr|B2TS14) Pseudouridine synthase OS=Clostridium botulinum (strain
Eklund 17B / Type B) GN=CLL_A2432 PE=3 SV=1
Length = 302
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 85/211 (40%), Positives = 123/211 (58%), Gaps = 30/211 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
R+D ++S +NG SR+ +Q I+ + VN +++ K ++ +K+ DEI T+ E ++L+
Sbjct: 16 RIDKYLSEMLNGKSRSFIQGLIEKESIKVNDKLI-KNNYKLKACDEIVITMPEAETLKVE 74
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
EDI LDI+YED+ ++V+NK MVVHPAPGN +GTLVN +L HC
Sbjct: 75 SEDIDLDILYEDKDVIVVNKEQGMVVHPAPGNYNGTLVNALLFHCT-------------- 120
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
SS G IRPGIVHR+DK TSG+LV+AK++ SH KL+ Q K +
Sbjct: 121 ------------DLSSINGV---IRPGIVHRIDKDTSGVLVIAKNDESHNKLAAQLKDHS 165
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
+ R Y +L G +G I+ +GRD NR
Sbjct: 166 MNREYYALVEGRFKNDSGIIDKPLGRDKKNR 196
>R6RGL0_9FIRM (tr|R6RGL0) Pseudouridine synthase OS=Eubacterium sp. CAG:251
GN=BN563_01550 PE=4 SV=1
Length = 307
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 82/211 (38%), Positives = 117/211 (55%), Gaps = 29/211 (13%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
R+D +++ I+ ++R+ + I++G V V ++ K S+ K+GDEI + + + L
Sbjct: 17 RIDKFLAENIDFLTRSMISKLIENGNVFVFDKIAQK-SYKCKAGDEISVNVPKPRVLETK 75
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
E+IPLDIVYED LLV+NKP MVVHPAPGN GTLVN +L+HC
Sbjct: 76 AENIPLDIVYEDSDLLVVNKPKGMVVHPAPGNYEGTLVNALLYHC--------------- 120
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
+S G IRPGIVHR+DK TSGLL+VAK++ SH L++Q K +
Sbjct: 121 -------------GNSLSGINGVIRPGIVHRIDKDTSGLLIVAKNDFSHLHLAQQIKEHS 167
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
R Y ++ G G + +GR P +R
Sbjct: 168 FYRAYQAVVYGNIKEDKGTVNEPIGRSPKDR 198
>R6D6D0_9CLOT (tr|R6D6D0) Pseudouridine synthase OS=Clostridium sp. CAG:594
GN=BN726_00061 PE=4 SV=1
Length = 299
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 92/211 (43%), Positives = 125/211 (59%), Gaps = 31/211 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
RLD +++ + ISR+++ IK GLV VNG+ K S+ ++ D I+ T A
Sbjct: 13 RLDKYLTLNTD-ISRSKISEMIKEGLVLVNGKQT-KSSYILRLNDNIEITGTLKIETNAK 70
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
EDIPLDIVYED++L+VINKP+ MVVHPA G+ SGTLVN +L A+
Sbjct: 71 AEDIPLDIVYEDDNLMVINKPSGMVVHPAAGHFSGTLVNALL----------------AH 114
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
T+D SS G RPGIVHR+DK TSGLLVVAK++ +H+ L+ Q K +T
Sbjct: 115 TKD----------LSSKNGDE---RPGIVHRIDKDTSGLLVVAKNDKTHEALANQLKDKT 161
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
+ R+YV+L G G I+ +GRDP +R
Sbjct: 162 LSRIYVALVKGRINHDTGTIDAPIGRDPYDR 192
>A9KKY5_CLOPH (tr|A9KKY5) Pseudouridine synthase OS=Clostridium phytofermentans
(strain ATCC 700394 / DSM 18823 / ISDg) GN=Cphy_2356
PE=3 SV=1
Length = 313
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 82/211 (38%), Positives = 122/211 (57%), Gaps = 29/211 (13%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
R+DS+++ GISR+ +Q IK LV +NG V+ K ++ +K GD + + + SL
Sbjct: 17 RIDSFLAEFEEGISRSYIQKLIKDSLVKINGNVI-KANYRLKEGDILTYEVPQPVSLEIA 75
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
E+IPLDI+YEDE ++VINKP +VVHPA G+ SGTLVN +L+HC +D L+
Sbjct: 76 AENIPLDILYEDEDIIVINKPKGLVVHPAAGHYSGTLVNALLYHC---------KDRLS- 125
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
G +RPGIVHR+D T+G+LVV K++ SH+ ++EQ K+ +
Sbjct: 126 ------------------GINGVMRPGIVHRIDMNTTGVLVVCKNDKSHQSIAEQLKVHS 167
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
I R Y +L G ++ +GR P +R
Sbjct: 168 ITRKYEALVYNSFKQTEGTVDAPIGRHPVDR 198
>R5XSD6_9PROT (tr|R5XSD6) Pseudouridine synthase OS=Acetobacter sp. CAG:267
GN=BN575_00199 PE=4 SV=1
Length = 325
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 79/211 (37%), Positives = 113/211 (53%), Gaps = 28/211 (13%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
R+D +I+ I SRA+VQ I+ G V + V+ + + GD + + E +
Sbjct: 22 RIDKYIAGEIRDFSRAQVQRLIEEGFVFADDEVILDKNHKTRIGDVYQVNLPEPKEAAPQ 81
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
E+IPLDI+YED L+V+NKPA M VHPA G +GTLVN +L+HC
Sbjct: 82 AENIPLDILYEDSDLIVVNKPAGMTVHPAAGVYTGTLVNALLYHCR-------------- 127
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
S G RPGIVHR+D+ TSG+LV AK++ +H+ L+EQF T
Sbjct: 128 --------------DSLSGIGGVARPGIVHRIDRNTSGILVAAKNDIAHRGLAEQFFYHT 173
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
I+R Y ++ G+P+P G I + R P +R
Sbjct: 174 IERTYYAVVYGIPSPEQGTITGNIARSPYDR 204
>L7VPH8_CLOSH (tr|L7VPH8) Pseudouridine synthase D OS=Clostridium stercorarium
subsp. stercorarium (strain ATCC 35414 / DSM 8532 /
NCIMB 11754) GN=rluA PE=4 SV=1
Length = 306
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 85/211 (40%), Positives = 120/211 (56%), Gaps = 29/211 (13%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
RLD+++S +I +SR +Q I+ LV VNG+ K G +I + + + LR
Sbjct: 19 RLDAFLSGKIPDVSRNYIQKLIEDNLVLVNGQS-TKAKVRTYPGMKITVYVPQPEPLRVK 77
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
PE+IPLDIVYED +L+INKP +MVVHPAPGN TLVN +L+HC
Sbjct: 78 PENIPLDIVYEDSDILIINKPRNMVVHPAPGNEDNTLVNAVLYHCG-------------- 123
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
DS ++N IRPGIVHR+DK T+GL+ VAK+ +H+ L+ Q K +
Sbjct: 124 --DSLSDINGI------------IRPGIVHRIDKDTTGLIAVAKNNKAHQSLALQLKEHS 169
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
+KRVY ++ G+ G I+ +GR P +R
Sbjct: 170 MKRVYDAIVEGIIREDRGVIDAPIGRHPVDR 200
>H8LE72_ENTFU (tr|H8LE72) Pseudouridine synthase OS=Enterococcus faecium (strain
Aus0004) GN=EFAU004_00972 PE=3 SV=1
Length = 303
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 87/211 (41%), Positives = 120/211 (56%), Gaps = 30/211 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
R+D ++ SR+++Q +K+G V VNG+ V K ++ VK GDEI I E ++L V
Sbjct: 14 RIDKVLTNLFTDYSRSQIQLWLKNGAVSVNGQPV-KANYKVKQGDEITVLIPEPETLDVV 72
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
PE+IPL IVYEDE + VINKP MVVHP+ G+T GT+VN +++H
Sbjct: 73 PENIPLTIVYEDEDVAVINKPQGMVVHPSAGHTHGTMVNALMYHIK-------------- 118
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
S+ G IRPGIVHR+DK TSGLL+VAK++ +H+ L++Q K +T
Sbjct: 119 ------------DLSTINGV---IRPGIVHRIDKDTSGLLMVAKNDQAHESLAQQLKDKT 163
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
R YV+L G G I +GR NR
Sbjct: 164 SLRKYVALVHGEIPHEKGTINAPIGRSKENR 194
>R4FGC6_ENTFC (tr|R4FGC6) RluA family pseudouridine synthase OS=Enterococcus
faecium UAA720 GN=SK9_02013 PE=4 SV=1
Length = 303
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 87/211 (41%), Positives = 120/211 (56%), Gaps = 30/211 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
R+D ++ SR+++Q +K+G V VNG+ V K ++ VK GDEI I E ++L V
Sbjct: 14 RIDKVLTNLFTDYSRSQIQLWLKNGAVSVNGQPV-KANYKVKQGDEITVLIPEPETLDVV 72
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
PE+IPL IVYEDE + VINKP MVVHP+ G+T GT+VN +++H
Sbjct: 73 PENIPLTIVYEDEDVAVINKPQGMVVHPSAGHTHGTMVNALMYHIK-------------- 118
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
S+ G IRPGIVHR+DK TSGLL+VAK++ +H+ L++Q K +T
Sbjct: 119 ------------DLSTINGV---IRPGIVHRIDKDTSGLLMVAKNDQAHESLAQQLKDKT 163
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
R YV+L G G I +GR NR
Sbjct: 164 SLRKYVALVHGEIPHEKGTINAPIGRSKENR 194
>R4E7T4_ENTFC (tr|R4E7T4) RluA family pseudouridine synthase OS=Enterococcus
faecium UAA952 GN=U9K_01296 PE=4 SV=1
Length = 303
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 87/211 (41%), Positives = 120/211 (56%), Gaps = 30/211 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
R+D ++ SR+++Q +K+G V VNG+ V K ++ VK GDEI I E ++L V
Sbjct: 14 RIDKVLTNLFTDYSRSQIQLWLKNGAVSVNGQPV-KANYKVKQGDEITVLIPEPETLDVV 72
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
PE+IPL IVYEDE + VINKP MVVHP+ G+T GT+VN +++H
Sbjct: 73 PENIPLTIVYEDEDVAVINKPQGMVVHPSAGHTHGTMVNALMYHIK-------------- 118
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
S+ G IRPGIVHR+DK TSGLL+VAK++ +H+ L++Q K +T
Sbjct: 119 ------------DLSTINGV---IRPGIVHRIDKDTSGLLMVAKNDQAHESLAQQLKDKT 163
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
R YV+L G G I +GR NR
Sbjct: 164 SLRKYVALVHGEIPHEKGTINAPIGRSKENR 194
>R4E4C0_ENTFC (tr|R4E4C0) RluA family pseudouridine synthase OS=Enterococcus
faecium VAN 332 GN=SKU_01742 PE=4 SV=1
Length = 303
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 87/211 (41%), Positives = 120/211 (56%), Gaps = 30/211 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
R+D ++ SR+++Q +K+G V VNG+ V K ++ VK GDEI I E ++L V
Sbjct: 14 RIDKVLTNLFTDYSRSQIQLWLKNGAVSVNGQPV-KANYKVKQGDEITVLIPEPETLDVV 72
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
PE+IPL IVYEDE + VINKP MVVHP+ G+T GT+VN +++H
Sbjct: 73 PENIPLTIVYEDEDVAVINKPQGMVVHPSAGHTHGTMVNALMYHIK-------------- 118
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
S+ G IRPGIVHR+DK TSGLL+VAK++ +H+ L++Q K +T
Sbjct: 119 ------------DLSTINGV---IRPGIVHRIDKDTSGLLMVAKNDQAHESLAQQLKDKT 163
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
R YV+L G G I +GR NR
Sbjct: 164 SLRKYVALVHGEIPHEKGTINAPIGRSKENR 194
>R4E2H2_ENTFC (tr|R4E2H2) RluA family pseudouridine synthase OS=Enterococcus
faecium UAA947 GN=U9E_00842 PE=4 SV=1
Length = 303
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 87/211 (41%), Positives = 120/211 (56%), Gaps = 30/211 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
R+D ++ SR+++Q +K+G V VNG+ V K ++ VK GDEI I E ++L V
Sbjct: 14 RIDKVLTNLFTDYSRSQIQLWLKNGAVSVNGQPV-KANYKVKQGDEITVLIPEPETLDVV 72
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
PE+IPL IVYEDE + VINKP MVVHP+ G+T GT+VN +++H
Sbjct: 73 PENIPLTIVYEDEDVAVINKPQGMVVHPSAGHTHGTMVNALMYHIK-------------- 118
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
S+ G IRPGIVHR+DK TSGLL+VAK++ +H+ L++Q K +T
Sbjct: 119 ------------DLSTINGV---IRPGIVHRIDKDTSGLLMVAKNDQAHESLAQQLKDKT 163
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
R YV+L G G I +GR NR
Sbjct: 164 SLRKYVALVHGEIPHEKGTINAPIGRSKENR 194
>R4DKN0_ENTFC (tr|R4DKN0) RluA family pseudouridine synthase OS=Enterococcus
faecium UAA951 GN=U9I_01313 PE=4 SV=1
Length = 303
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 87/211 (41%), Positives = 120/211 (56%), Gaps = 30/211 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
R+D ++ SR+++Q +K+G V VNG+ V K ++ VK GDEI I E ++L V
Sbjct: 14 RIDKVLTNLFTDYSRSQIQLWLKNGAVSVNGQPV-KANYKVKQGDEITVLIPEPETLDVV 72
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
PE+IPL IVYEDE + VINKP MVVHP+ G+T GT+VN +++H
Sbjct: 73 PENIPLTIVYEDEDVAVINKPQGMVVHPSAGHTHGTMVNALMYHIK-------------- 118
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
S+ G IRPGIVHR+DK TSGLL+VAK++ +H+ L++Q K +T
Sbjct: 119 ------------DLSTINGV---IRPGIVHRIDKDTSGLLMVAKNDQAHESLAQQLKDKT 163
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
R YV+L G G I +GR NR
Sbjct: 164 SLRKYVALVHGEIPHEKGTINAPIGRSKENR 194
>R4C2G0_ENTFC (tr|R4C2G0) RluA family pseudouridine synthase OS=Enterococcus
faecium UAA1025 GN=U9Y_01587 PE=4 SV=1
Length = 303
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 87/211 (41%), Positives = 120/211 (56%), Gaps = 30/211 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
R+D ++ SR+++Q +K+G V VNG+ V K ++ VK GDEI I E ++L V
Sbjct: 14 RIDKVLTNLFTDYSRSQIQLWLKNGAVSVNGQPV-KANYKVKQGDEITVLIPEPETLDVV 72
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
PE+IPL IVYEDE + VINKP MVVHP+ G+T GT+VN +++H
Sbjct: 73 PENIPLTIVYEDEDVAVINKPQGMVVHPSAGHTHGTMVNALMYHIK-------------- 118
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
S+ G IRPGIVHR+DK TSGLL+VAK++ +H+ L++Q K +T
Sbjct: 119 ------------DLSTINGV---IRPGIVHRIDKDTSGLLMVAKNDQAHESLAQQLKDKT 163
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
R YV+L G G I +GR NR
Sbjct: 164 SLRKYVALVHGEIPHEKGTINAPIGRSKENR 194
>R4B3K2_ENTFC (tr|R4B3K2) RluA family pseudouridine synthase OS=Enterococcus
faecium UAA1019 GN=U9Q_01921 PE=4 SV=1
Length = 303
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 87/211 (41%), Positives = 120/211 (56%), Gaps = 30/211 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
R+D ++ SR+++Q +K+G V VNG+ V K ++ VK GDEI I E ++L V
Sbjct: 14 RIDKVLTNLFTDYSRSQIQLWLKNGAVSVNGQPV-KANYKVKQGDEITVLIPEPETLDVV 72
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
PE+IPL IVYEDE + VINKP MVVHP+ G+T GT+VN +++H
Sbjct: 73 PENIPLTIVYEDEDVAVINKPQGMVVHPSAGHTHGTMVNALMYHIK-------------- 118
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
S+ G IRPGIVHR+DK TSGLL+VAK++ +H+ L++Q K +T
Sbjct: 119 ------------DLSTINGV---IRPGIVHRIDKDTSGLLMVAKNDQAHESLAQQLKDKT 163
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
R YV+L G G I +GR NR
Sbjct: 164 SLRKYVALVHGEIPHEKGTINAPIGRSKENR 194
>R3ZTH4_ENTFC (tr|R3ZTH4) RluA family pseudouridine synthase OS=Enterococcus
faecium UAA945 GN=SSQ_02065 PE=4 SV=1
Length = 303
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 87/211 (41%), Positives = 120/211 (56%), Gaps = 30/211 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
R+D ++ SR+++Q +K+G V VNG+ V K ++ VK GDEI I E ++L V
Sbjct: 14 RIDKVLTNLFTDYSRSQIQLWLKNGAVSVNGQPV-KANYKVKQGDEITVLIPEPETLDVV 72
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
PE+IPL IVYEDE + VINKP MVVHP+ G+T GT+VN +++H
Sbjct: 73 PENIPLTIVYEDEDVAVINKPQGMVVHPSAGHTHGTMVNALMYHIK-------------- 118
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
S+ G IRPGIVHR+DK TSGLL+VAK++ +H+ L++Q K +T
Sbjct: 119 ------------DLSTINGV---IRPGIVHRIDKDTSGLLMVAKNDQAHESLAQQLKDKT 163
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
R YV+L G G I +GR NR
Sbjct: 164 SLRKYVALVHGEIPHEKGTINAPIGRSKENR 194
>R3YL98_ENTFC (tr|R3YL98) RluA family pseudouridine synthase OS=Enterococcus
faecium UAA949 GN=UK9_01687 PE=4 SV=1
Length = 303
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 87/211 (41%), Positives = 120/211 (56%), Gaps = 30/211 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
R+D ++ SR+++Q +K+G V VNG+ V K ++ VK GDEI I E ++L V
Sbjct: 14 RIDKVLTNLFTDYSRSQIQLWLKNGAVSVNGQPV-KANYKVKQGDEITVLIPEPETLDVV 72
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
PE+IPL IVYEDE + VINKP MVVHP+ G+T GT+VN +++H
Sbjct: 73 PENIPLTIVYEDEDVAVINKPQGMVVHPSAGHTHGTMVNALMYHIK-------------- 118
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
S+ G IRPGIVHR+DK TSGLL+VAK++ +H+ L++Q K +T
Sbjct: 119 ------------DLSTINGV---IRPGIVHRIDKDTSGLLMVAKNDQAHESLAQQLKDKT 163
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
R YV+L G G I +GR NR
Sbjct: 164 SLRKYVALVHGEIPHEKGTINAPIGRSKENR 194
>R3TQ42_ENTFC (tr|R3TQ42) RluA family pseudouridine synthase OS=Enterococcus
faecium UAA714 GN=SIW_01363 PE=4 SV=1
Length = 303
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 87/211 (41%), Positives = 120/211 (56%), Gaps = 30/211 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
R+D ++ SR+++Q +K+G V VNG+ V K ++ VK GDEI I E ++L V
Sbjct: 14 RIDKVLTNLFTDYSRSQIQLWLKNGAVSVNGQPV-KANYKVKQGDEITVLIPEPETLDVV 72
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
PE+IPL IVYEDE + VINKP MVVHP+ G+T GT+VN +++H
Sbjct: 73 PENIPLTIVYEDEDVAVINKPQGMVVHPSAGHTHGTMVNALMYHIK-------------- 118
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
S+ G IRPGIVHR+DK TSGLL+VAK++ +H+ L++Q K +T
Sbjct: 119 ------------DLSTINGV---IRPGIVHRIDKDTSGLLMVAKNDQAHESLAQQLKDKT 163
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
R YV+L G G I +GR NR
Sbjct: 164 SLRKYVALVHGEIPHEKGTINAPIGRSKENR 194
>R3T6Z7_ENTFC (tr|R3T6Z7) RluA family pseudouridine synthase OS=Enterococcus
faecium UAA715 GN=SIY_01513 PE=4 SV=1
Length = 303
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 87/211 (41%), Positives = 120/211 (56%), Gaps = 30/211 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
R+D ++ SR+++Q +K+G V VNG+ V K ++ VK GDEI I E ++L V
Sbjct: 14 RIDKVLTNLFTDYSRSQIQLWLKNGAVSVNGQPV-KANYKVKQGDEITVLIPEPETLDVV 72
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
PE+IPL IVYEDE + VINKP MVVHP+ G+T GT+VN +++H
Sbjct: 73 PENIPLTIVYEDEDVAVINKPQGMVVHPSAGHTHGTMVNALMYHIK-------------- 118
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
S+ G IRPGIVHR+DK TSGLL+VAK++ +H+ L++Q K +T
Sbjct: 119 ------------DLSTINGV---IRPGIVHRIDKDTSGLLMVAKNDQAHESLAQQLKDKT 163
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
R YV+L G G I +GR NR
Sbjct: 164 SLRKYVALVHGEIPHEKGTINAPIGRSKENR 194
>R4FAF3_ENTFC (tr|R4FAF3) RluA family pseudouridine synthase OS=Enterococcus
faecium HF50203 GN=SS9_01516 PE=4 SV=1
Length = 303
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 87/211 (41%), Positives = 120/211 (56%), Gaps = 30/211 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
R+D ++ SR+++Q +K+G V VNG+ V K ++ VK GDEI I E ++L V
Sbjct: 14 RIDKVLTNLFTDYSRSQIQLWLKNGAVSVNGQPV-KANYKVKQGDEITVLIPEPETLDVV 72
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
PE+IPL IVYEDE + VINKP MVVHP+ G+T GT+VN +++H
Sbjct: 73 PENIPLTIVYEDEDVAVINKPQGMVVHPSAGHTHGTMVNALMYHIK-------------- 118
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
S+ G IRPGIVHR+DK TSGLL+VAK++ +H+ L++Q K +T
Sbjct: 119 ------------DLSTINGV---IRPGIVHRIDKDTSGLLMVAKNDQAHESLAQQLKDKT 163
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
R YV+L G G I +GR NR
Sbjct: 164 SLRKYVALVHGEIPHEKGTINAPIGRSKENR 194
>R4D1C6_ENTFC (tr|R4D1C6) RluA family pseudouridine synthase OS=Enterococcus
faecium HF50106 GN=SS1_01504 PE=4 SV=1
Length = 303
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 87/211 (41%), Positives = 120/211 (56%), Gaps = 30/211 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
R+D ++ SR+++Q +K+G V VNG+ V K ++ VK GDEI I E ++L V
Sbjct: 14 RIDKVLTNLFTDYSRSQIQLWLKNGAVSVNGQPV-KANYKVKQGDEITVLIPEPETLDVV 72
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
PE+IPL IVYEDE + VINKP MVVHP+ G+T GT+VN +++H
Sbjct: 73 PENIPLTIVYEDEDVAVINKPQGMVVHPSAGHTHGTMVNALMYHIK-------------- 118
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
S+ G IRPGIVHR+DK TSGLL+VAK++ +H+ L++Q K +T
Sbjct: 119 ------------DLSTINGV---IRPGIVHRIDKDTSGLLMVAKNDQAHESLAQQLKDKT 163
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
R YV+L G G I +GR NR
Sbjct: 164 SLRKYVALVHGEIPHEKGTINAPIGRSKENR 194
>R4CXS8_ENTFC (tr|R4CXS8) RluA family pseudouridine synthase OS=Enterococcus
faecium HF50105 GN=SQY_01177 PE=4 SV=1
Length = 303
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 87/211 (41%), Positives = 120/211 (56%), Gaps = 30/211 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
R+D ++ SR+++Q +K+G V VNG+ V K ++ VK GDEI I E ++L V
Sbjct: 14 RIDKVLTNLFTDYSRSQIQLWLKNGAVSVNGQPV-KANYKVKQGDEITVLIPEPETLDVV 72
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
PE+IPL IVYEDE + VINKP MVVHP+ G+T GT+VN +++H
Sbjct: 73 PENIPLTIVYEDEDVAVINKPQGMVVHPSAGHTHGTMVNALMYHIK-------------- 118
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
S+ G IRPGIVHR+DK TSGLL+VAK++ +H+ L++Q K +T
Sbjct: 119 ------------DLSTINGV---IRPGIVHRIDKDTSGLLMVAKNDQAHESLAQQLKDKT 163
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
R YV+L G G I +GR NR
Sbjct: 164 SLRKYVALVHGEIPHEKGTINAPIGRSKENR 194
>R3SUF5_ENTFC (tr|R3SUF5) RluA family pseudouridine synthase OS=Enterococcus
faecium S658-3 GN=SIS_01373 PE=4 SV=1
Length = 303
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 87/211 (41%), Positives = 120/211 (56%), Gaps = 30/211 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
R+D ++ SR+++Q +K+G V VNG+ V K ++ VK GDEI I E ++L V
Sbjct: 14 RIDKVLTNLFTDYSRSQIQLWLKNGAVSVNGQPV-KANYKVKQGDEITVLIPEPETLDVV 72
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
PE+IPL IVYEDE + VINKP MVVHP+ G+T GT+VN +++H
Sbjct: 73 PENIPLTIVYEDEDVAVINKPQGMVVHPSAGHTHGTMVNALMYHIK-------------- 118
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
S+ G IRPGIVHR+DK TSGLL+VAK++ +H+ L++Q K +T
Sbjct: 119 ------------DLSTINGV---IRPGIVHRIDKDTSGLLMVAKNDQAHESLAQQLKDKT 163
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
R YV+L G G I +GR NR
Sbjct: 164 SLRKYVALVHGEIPHEKGTINAPIGRSKENR 194
>R3ST14_ENTFC (tr|R3ST14) RluA family pseudouridine synthase OS=Enterococcus
faecium KH36syn GN=SIQ_01260 PE=4 SV=1
Length = 303
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 87/211 (41%), Positives = 120/211 (56%), Gaps = 30/211 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
R+D ++ SR+++Q +K+G V VNG+ V K ++ VK GDEI I E ++L V
Sbjct: 14 RIDKVLTNLFTDYSRSQIQLWLKNGAVSVNGQPV-KANYKVKQGDEITVLIPEPETLDVV 72
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
PE+IPL IVYEDE + VINKP MVVHP+ G+T GT+VN +++H
Sbjct: 73 PENIPLTIVYEDEDVAVINKPQGMVVHPSAGHTHGTMVNALMYHIK-------------- 118
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
S+ G IRPGIVHR+DK TSGLL+VAK++ +H+ L++Q K +T
Sbjct: 119 ------------DLSTINGV---IRPGIVHRIDKDTSGLLMVAKNDQAHESLAQQLKDKT 163
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
R YV+L G G I +GR NR
Sbjct: 164 SLRKYVALVHGEIPHEKGTINAPIGRSKENR 194
>R3S959_ENTFC (tr|R3S959) RluA family pseudouridine synthase OS=Enterococcus
faecium H17494 GN=SI9_01401 PE=4 SV=1
Length = 303
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 87/211 (41%), Positives = 120/211 (56%), Gaps = 30/211 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
R+D ++ SR+++Q +K+G V VNG+ V K ++ VK GDEI I E ++L V
Sbjct: 14 RIDKVLTNLFTDYSRSQIQLWLKNGAVSVNGQPV-KANYKVKQGDEITVLIPEPETLDVV 72
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
PE+IPL IVYEDE + VINKP MVVHP+ G+T GT+VN +++H
Sbjct: 73 PENIPLTIVYEDEDVAVINKPQGMVVHPSAGHTHGTMVNALMYHIK-------------- 118
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
S+ G IRPGIVHR+DK TSGLL+VAK++ +H+ L++Q K +T
Sbjct: 119 ------------DLSTINGV---IRPGIVHRIDKDTSGLLMVAKNDQAHESLAQQLKDKT 163
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
R YV+L G G I +GR NR
Sbjct: 164 SLRKYVALVHGEIPHEKGTINAPIGRSKENR 194
>D4J3G9_BUTFI (tr|D4J3G9) Ribosomal large subunit pseudouridine synthase D
OS=Butyrivibrio fibrisolvens GN=CIY_19380 PE=4 SV=1
Length = 305
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 76/211 (36%), Positives = 118/211 (55%), Gaps = 29/211 (13%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
R+D +++ + SR+ Q +I +G V VNG+ + K + K GDEI +I ++ + +
Sbjct: 17 RIDKYLAAALPEKSRSYYQKAIDNGFVLVNGKQI-KSKYQTKLGDEIIVSIEPVKEIDIL 75
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
PEDIP+DI+YED ++V+NKP MVVHPAPG+ SGTLVN +++HC
Sbjct: 76 PEDIPIDILYEDSDVIVVNKPKGMVVHPAPGHYSGTLVNALMYHCK-------------- 121
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
S G IRPGIVHR+D T+G L+V K++ +H ++ Q K+ +
Sbjct: 122 --------------DSLSGINGEIRPGIVHRIDMNTTGSLLVCKNDKAHNDIAAQIKVHS 167
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
+ R+Y + +G G I +GR+P +R
Sbjct: 168 VNRIYKGIVVGNFKEEEGTINANIGRNPKDR 198
>R4E1F1_ENTFC (tr|R4E1F1) RluA family pseudouridine synthase OS=Enterococcus
faecium VAN 222 GN=SKS_01489 PE=4 SV=1
Length = 303
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 87/211 (41%), Positives = 120/211 (56%), Gaps = 30/211 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
R+D ++ SR+++Q +K+G V VNG+ V K ++ VK GDEI I E ++L V
Sbjct: 14 RIDKVLTNLFTDYSRSQIQLWLKNGAVSVNGQPV-KANYKVKQGDEITVLIPEPETLDVV 72
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
PE+IPL IVYEDE + VINKP MVVHP+ G+T GT+VN +++H
Sbjct: 73 PENIPLTIVYEDEDVAVINKPQGMVVHPSAGHTHGTMVNALMYHIK-------------- 118
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
S+ G IRPGIVHR+DK TSGLL+VAK++ +H+ L++Q K +T
Sbjct: 119 ------------DLSTINGV---IRPGIVHRIDKDTSGLLMVAKNDQAHESLAQQLKDKT 163
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
R YV+L G G I +GR NR
Sbjct: 164 SLRKYVALVHGEIPHEKGTINAPIGRSKENR 194
>R4DUE4_ENTFC (tr|R4DUE4) RluA family pseudouridine synthase OS=Enterococcus
faecium UAA721 GN=SKC_00904 PE=4 SV=1
Length = 303
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 87/211 (41%), Positives = 120/211 (56%), Gaps = 30/211 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
R+D ++ SR+++Q +K+G V VNG+ V K ++ VK GDEI I E ++L V
Sbjct: 14 RIDKVLTNLFTDYSRSQIQLWLKNGAVSVNGQPV-KANYKVKQGDEITVLIPEPETLDVV 72
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
PE+IPL IVYEDE + VINKP MVVHP+ G+T GT+VN +++H
Sbjct: 73 PENIPLTIVYEDEDVAVINKPQGMVVHPSAGHTHGTMVNALMYHIK-------------- 118
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
S+ G IRPGIVHR+DK TSGLL+VAK++ +H+ L++Q K +T
Sbjct: 119 ------------DLSTINGV---IRPGIVHRIDKDTSGLLMVAKNDQAHESLAQQLKDKT 163
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
R YV+L G G I +GR NR
Sbjct: 164 SLRKYVALVHGEIPHEKGTINAPIGRSKENR 194
>R4CAT9_ENTFC (tr|R4CAT9) RluA family pseudouridine synthase OS=Enterococcus
faecium UAA1024 GN=U9W_00862 PE=4 SV=1
Length = 303
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 87/211 (41%), Positives = 120/211 (56%), Gaps = 30/211 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
R+D ++ SR+++Q +K+G V VNG+ V K ++ VK GDEI I E ++L V
Sbjct: 14 RIDKVLTNLFTDYSRSQIQLWLKNGAVSVNGQPV-KANYKVKQGDEITVLIPEPETLDVV 72
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
PE+IPL IVYEDE + VINKP MVVHP+ G+T GT+VN +++H
Sbjct: 73 PENIPLTIVYEDEDVAVINKPQGMVVHPSAGHTHGTMVNALMYHIK-------------- 118
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
S+ G IRPGIVHR+DK TSGLL+VAK++ +H+ L++Q K +T
Sbjct: 119 ------------DLSTINGV---IRPGIVHRIDKDTSGLLMVAKNDQAHESLAQQLKDKT 163
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
R YV+L G G I +GR NR
Sbjct: 164 SLRKYVALVHGEIPHEKGTINAPIGRSKENR 194
>R4C1N4_ENTFC (tr|R4C1N4) RluA family pseudouridine synthase OS=Enterococcus
faecium VAN 335 GN=SKW_01348 PE=4 SV=1
Length = 303
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 87/211 (41%), Positives = 120/211 (56%), Gaps = 30/211 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
R+D ++ SR+++Q +K+G V VNG+ V K ++ VK GDEI I E ++L V
Sbjct: 14 RIDKVLTNLFTDYSRSQIQLWLKNGAVSVNGQPV-KANYKVKQGDEITVLIPEPETLDVV 72
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
PE+IPL IVYEDE + VINKP MVVHP+ G+T GT+VN +++H
Sbjct: 73 PENIPLTIVYEDEDVAVINKPQGMVVHPSAGHTHGTMVNALMYHIK-------------- 118
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
S+ G IRPGIVHR+DK TSGLL+VAK++ +H+ L++Q K +T
Sbjct: 119 ------------DLSTINGV---IRPGIVHRIDKDTSGLLMVAKNDQAHESLAQQLKDKT 163
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
R YV+L G G I +GR NR
Sbjct: 164 SLRKYVALVHGEIPHEKGTINAPIGRSKENR 194
>R4BT04_ENTFC (tr|R4BT04) RluA family pseudouridine synthase OS=Enterococcus
faecium UAA1023 GN=U9U_02338 PE=4 SV=1
Length = 303
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 87/211 (41%), Positives = 120/211 (56%), Gaps = 30/211 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
R+D ++ SR+++Q +K+G V VNG+ V K ++ VK GDEI I E ++L V
Sbjct: 14 RIDKVLTNLFTDYSRSQIQLWLKNGAVSVNGQPV-KANYKVKQGDEITVLIPEPETLDVV 72
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
PE+IPL IVYEDE + VINKP MVVHP+ G+T GT+VN +++H
Sbjct: 73 PENIPLTIVYEDEDVAVINKPQGMVVHPSAGHTHGTMVNALMYHIK-------------- 118
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
S+ G IRPGIVHR+DK TSGLL+VAK++ +H+ L++Q K +T
Sbjct: 119 ------------DLSTINGV---IRPGIVHRIDKDTSGLLMVAKNDQAHESLAQQLKDKT 163
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
R YV+L G G I +GR NR
Sbjct: 164 SLRKYVALVHGEIPHEKGTINAPIGRSKENR 194
>R4A516_ENTFC (tr|R4A516) RluA family pseudouridine synthase OS=Enterococcus
faecium HM1072 GN=SSM_01992 PE=4 SV=1
Length = 303
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 87/211 (41%), Positives = 120/211 (56%), Gaps = 30/211 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
R+D ++ SR+++Q +K+G V VNG+ V K ++ VK GDEI I E ++L V
Sbjct: 14 RIDKVLTNLFTDYSRSQIQLWLKNGAVSVNGQPV-KANYKVKQGDEITVLIPEPETLDVV 72
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
PE+IPL IVYEDE + VINKP MVVHP+ G+T GT+VN +++H
Sbjct: 73 PENIPLTIVYEDEDVAVINKPQGMVVHPSAGHTHGTMVNALMYHIK-------------- 118
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
S+ G IRPGIVHR+DK TSGLL+VAK++ +H+ L++Q K +T
Sbjct: 119 ------------DLSTINGV---IRPGIVHRIDKDTSGLLMVAKNDQAHESLAQQLKDKT 163
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
R YV+L G G I +GR NR
Sbjct: 164 SLRKYVALVHGEIPHEKGTINAPIGRSKENR 194
>R3VTJ8_ENTFC (tr|R3VTJ8) RluA family pseudouridine synthase OS=Enterococcus
faecium EnGen0305 GN=UK3_00639 PE=4 SV=1
Length = 303
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 87/211 (41%), Positives = 120/211 (56%), Gaps = 30/211 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
R+D ++ SR+++Q +K+G V VNG+ V K ++ VK GDEI I E ++L V
Sbjct: 14 RIDKVLTNLFTDYSRSQIQLWLKNGAVSVNGQPV-KANYKVKQGDEITVLIPEPETLDVV 72
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
PE+IPL IVYEDE + VINKP MVVHP+ G+T GT+VN +++H
Sbjct: 73 PENIPLTIVYEDEDVAVINKPQGMVVHPSAGHTHGTMVNALMYHIK-------------- 118
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
S+ G IRPGIVHR+DK TSGLL+VAK++ +H+ L++Q K +T
Sbjct: 119 ------------DLSTINGV---IRPGIVHRIDKDTSGLLMVAKNDQAHESLAQQLKDKT 163
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
R YV+L G G I +GR NR
Sbjct: 164 SLRKYVALVHGEIPHEKGTINAPIGRSKENR 194
>A4IM27_GEOTN (tr|A4IM27) Pseudouridine synthase OS=Geobacillus
thermodenitrificans (strain NG80-2) GN=GTNG_1003 PE=3
SV=1
Length = 304
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 87/211 (41%), Positives = 117/211 (55%), Gaps = 30/211 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
R+D I+ + SR++VQ IK+GLV VNGR V K ++ + GD + + E + L
Sbjct: 16 RIDKVIAALNDEWSRSQVQQWIKNGLVTVNGRTV-KANYKSELGDTVAISPPEPEPLHVE 74
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
PE IPLDI YEDE +LV+NKP MVVHPAPG+ GTLVN +L HC
Sbjct: 75 PEPIPLDIYYEDEDVLVVNKPRGMVVHPAPGHMRGTLVNALLAHCR-------------- 120
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
G +RPGIVHR+DK TSGLL+VAK++ +H+ L EQ +T
Sbjct: 121 ---------------DLSGINGVLRPGIVHRIDKDTSGLLMVAKNDAAHRSLVEQLVNKT 165
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
+ R Y ++ GV G I+ +GRD +R
Sbjct: 166 VTRRYKAIVHGVIPHDYGTIDAPIGRDKRDR 196
>B4BJB7_9BACI (tr|B4BJB7) Pseudouridine synthase OS=Geobacillus sp. G11MC16
GN=G11MC16DRAFT_0167 PE=3 SV=1
Length = 304
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 87/211 (41%), Positives = 117/211 (55%), Gaps = 30/211 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
R+D I+ + SR++VQ IK+GLV VNGR V K ++ + GD + + E + L
Sbjct: 16 RIDKVIAALNDEWSRSQVQQWIKNGLVTVNGRTV-KANYKSELGDTVAISPPEPEPLHVE 74
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
PE IPLDI YEDE +LV+NKP MVVHPAPG+ GTLVN +L HC
Sbjct: 75 PEPIPLDIYYEDEDVLVVNKPRGMVVHPAPGHMRGTLVNALLAHCR-------------- 120
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
G +RPGIVHR+DK TSGLL+VAK++ +H+ L EQ +T
Sbjct: 121 ---------------DLSGINGVLRPGIVHRIDKDTSGLLMVAKNDAAHRSLVEQLVNKT 165
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
+ R Y ++ GV G I+ +GRD +R
Sbjct: 166 VTRRYKAIVHGVIPHDYGTIDAPIGRDKRDR 196
>I3E4Z8_BACMT (tr|I3E4Z8) Pseudouridine synthase OS=Bacillus methanolicus PB1
GN=PB1_01450 PE=3 SV=1
Length = 303
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 86/222 (38%), Positives = 123/222 (55%), Gaps = 33/222 (14%)
Query: 72 IVDNRIGSGKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKC 131
I+D + G R+D IS+ SR+++Q IK G + VNG+ V K ++ D+I+
Sbjct: 8 ILDEQAGG---RIDKLISSLNEEWSRSQIQQWIKDGQILVNGQKV-KTNYKCSLNDQIEI 63
Query: 132 TIAELQSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPN 191
I E + L +PE++ LDI YED +LV+NKP MVVHPAPG++SGTLVNG++ HC
Sbjct: 64 FIPEPEELDVIPEEMNLDIYYEDHDVLVVNKPKGMVVHPAPGHSSGTLVNGLMAHC---- 119
Query: 192 AEFSNEDALAYTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSH 251
G +RPGIVHR+DK TSGLL++AK++ SH
Sbjct: 120 -------------------------KDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDFSH 154
Query: 252 KKLSEQFKLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
+ L Q +T+ R Y ++ GV G I+ +GRDP +R
Sbjct: 155 ESLVNQLVDKTVTRKYKAIVHGVIPHDYGTIDAPLGRDPKDR 196
>M0W6I5_HORVD (tr|M0W6I5) Uncharacterized protein OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 158
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 80/142 (56%), Positives = 90/142 (63%), Gaps = 19/142 (13%)
Query: 166 MVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAYTEDSDDEL--------------N 211
MVVHPAPGN +GTLVN ILHHC + S LA DDE
Sbjct: 1 MVVHPAPGNANGTLVNAILHHCKI-----STFTCLARNSIDDDECPESSDDDVDVFDVDQ 55
Query: 212 SFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRTIKRVYVSLT 271
S E A +RPGIVHRLDKGTSGLLVVAKDEHSH +L+EQFKL TI RVY+SLT
Sbjct: 56 FTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLT 115
Query: 272 IGVPTPVAGRIEVAVGRDPNNR 293
G+P+P + RIEV + RDPNNR
Sbjct: 116 CGLPSPNSARIEVPISRDPNNR 137
>M0W6I6_HORVD (tr|M0W6I6) Uncharacterized protein OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 160
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 80/142 (56%), Positives = 90/142 (63%), Gaps = 19/142 (13%)
Query: 166 MVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAYTEDSDDEL--------------N 211
MVVHPAPGN +GTLVN ILHHC + S LA DDE
Sbjct: 1 MVVHPAPGNANGTLVNAILHHCKI-----STFTCLARNSIDDDECPESSDDDVDVFDVDQ 55
Query: 212 SFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRTIKRVYVSLT 271
S E A +RPGIVHRLDKGTSGLLVVAKDEHSH +L+EQFKL TI RVY+SLT
Sbjct: 56 FTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLT 115
Query: 272 IGVPTPVAGRIEVAVGRDPNNR 293
G+P+P + RIEV + RDPNNR
Sbjct: 116 CGLPSPNSARIEVPISRDPNNR 137
>N9Y1C6_9CLOT (tr|N9Y1C6) RluA family pseudouridine synthase OS=Clostridium
colicanis 209318 GN=HMPREF1092_01194 PE=4 SV=1
Length = 305
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 87/211 (41%), Positives = 119/211 (56%), Gaps = 30/211 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
R+D +I+ + G SR+ +Q I+ G V VN + V K ++ +K D IK TI E L
Sbjct: 16 RIDKFITDIMEGKSRSYIQGMIEEGYVLVNNKKV-KSNYKLKLNDVIKTTIKEPVELEVK 74
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
E+IP+DI+YED ++V+NKP MVVHPAPGN GTLVN +L+HC
Sbjct: 75 KENIPIDILYEDSDVIVVNKPKGMVVHPAPGNYEGTLVNALLYHCK-------------- 120
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
SS G IRPGIVHR+DK T+G+LVVAK++ +H KLSEQ K +
Sbjct: 121 ------------DLSSINGV---IRPGIVHRIDKDTTGVLVVAKNDEAHVKLSEQLKDHS 165
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
+KR Y +L G +G I+ + R +R
Sbjct: 166 MKREYYALVEGRLKKDSGTIDKPLARSKRDR 196
>G9QMJ7_9BACI (tr|G9QMJ7) Pseudouridine synthase OS=Bacillus smithii 7_3_47FAA
GN=HMPREF1015_00764 PE=3 SV=1
Length = 303
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 83/211 (39%), Positives = 118/211 (55%), Gaps = 30/211 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
R+D +S SR++VQ IK G V VNG V K ++ ++ D I ++ E + L
Sbjct: 16 RIDKVLSQWNEDWSRSQVQEWIKEGRVTVNGATV-KANYKCEADDRIVISVPEPEVLEIT 74
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
PE++ LDI YED ++V+NKP MVVHPAPG+ SGTLVNG++ HC
Sbjct: 75 PENMDLDIYYEDRDVIVVNKPRGMVVHPAPGHLSGTLVNGLMAHC--------------- 119
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
G +RPGIVHR+DK TSGLL+ AK++++H+KLS+Q +T
Sbjct: 120 --------------KDLSGINGVLRPGIVHRIDKDTSGLLMAAKNDYAHEKLSQQLSNKT 165
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
+ R Y ++ GV G I+ +GRDP +R
Sbjct: 166 VTRKYKAIVHGVIPHDVGTIDAPIGRDPKDR 196
>B2V4U4_CLOBA (tr|B2V4U4) Pseudouridine synthase OS=Clostridium botulinum (strain
Alaska E43 / Type E3) GN=CLH_2197 PE=3 SV=1
Length = 302
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 85/211 (40%), Positives = 122/211 (57%), Gaps = 30/211 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
R+D ++S +NG SR+ +Q I+ + VN +++ K ++ +K+ DEI T+ E + L+
Sbjct: 16 RIDKYLSEMLNGKSRSFIQGLIEKESIKVNNKLI-KSNYKLKACDEIVITMPEAEILKVE 74
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
EDI LDI+YED+ ++V+NK MVVHPAPGN +GTLVN +L HC
Sbjct: 75 SEDIDLDILYEDKDVIVVNKEQGMVVHPAPGNYNGTLVNALLFHCT-------------- 120
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
SS G IRPGIVHR+DK TSG+LV+AK++ SH KL+ Q K +
Sbjct: 121 ------------DLSSINGV---IRPGIVHRIDKDTSGVLVIAKNDESHNKLAAQLKDHS 165
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
+ R Y +L G +G I+ +GRD NR
Sbjct: 166 MNREYYALVEGRFKNDSGVIDKPLGRDKKNR 196
>R6ZZA5_9FIRM (tr|R6ZZA5) Pseudouridine synthase OS=Roseburia sp. CAG:309
GN=BN600_02052 PE=4 SV=1
Length = 307
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 81/216 (37%), Positives = 118/216 (54%), Gaps = 28/216 (12%)
Query: 78 GSGKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQ 137
G RLD +I+ R +SR+ +Q IK V +N V +K V+ GD + ++ + +
Sbjct: 12 GEDSMRLDQYIAGRCMDLSRSYIQKLIKENRVTINDNVQSKSKTAVQEGDIVMVSLPDPK 71
Query: 138 SLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNE 197
L P+DIPLDI+YED +LV+NKP MVVHPAPG+ TLVN +L+HC
Sbjct: 72 ELEIKPQDIPLDILYEDNDVLVVNKPKGMVVHPAPGHYEDTLVNAVLYHC---------R 122
Query: 198 DALAYTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQ 257
D L+ G +RPGIVHR+DK T+G L+V K++ SH+K+++Q
Sbjct: 123 DNLS-------------------GINGVLRPGIVHRIDKDTTGALIVCKNDKSHQKIADQ 163
Query: 258 FKLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
+ TI R Y ++ + G I+ +GR P NR
Sbjct: 164 LRAHTITRSYRAIVYNNFSEEEGTIQAPIGRHPTNR 199
>Q5L0U9_GEOKA (tr|Q5L0U9) Pseudouridine synthase OS=Geobacillus kaustophilus
(strain HTA426) GN=GK1146 PE=3 SV=1
Length = 304
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 86/211 (40%), Positives = 117/211 (55%), Gaps = 30/211 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
R+D I+ SR++VQ IK+GLV VNG+ V K ++ ++GD + + E + L
Sbjct: 16 RIDKVIAALNEEWSRSQVQQWIKNGLVTVNGQTV-KANYKCEAGDSVAVSPPEPEPLHVE 74
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
PE IPLDI YEDE +LV+NKP MVVHPAPG+ GTLVN +L HC
Sbjct: 75 PEPIPLDIYYEDEDVLVVNKPRGMVVHPAPGHMRGTLVNALLAHCR-------------- 120
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
G +RPGIVHR+DK TSGLL+VAK++ +H+ L EQ +T
Sbjct: 121 ---------------DLSGINGVLRPGIVHRIDKDTSGLLMVAKNDAAHRSLVEQLVNKT 165
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
+ R Y ++ GV G I+ +GRD +R
Sbjct: 166 VTRRYKAIVHGVIPHDYGTIDAPIGRDKRDR 196
>E8SYY4_GEOS2 (tr|E8SYY4) Pseudouridine synthase OS=Geobacillus sp. (strain
Y412MC52) GN=GYMC52_1038 PE=3 SV=1
Length = 304
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 86/211 (40%), Positives = 117/211 (55%), Gaps = 30/211 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
R+D I+ SR++VQ IK+GLV VNG+ V K ++ ++GD + + E + L
Sbjct: 16 RIDKVIAALNEEWSRSQVQQWIKNGLVTVNGQTV-KANYKCEAGDSVAVSPPEPEPLHVE 74
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
PE IPLDI YEDE +LV+NKP MVVHPAPG+ GTLVN +L HC
Sbjct: 75 PEPIPLDIYYEDEDVLVVNKPRGMVVHPAPGHMRGTLVNALLAHCR-------------- 120
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
G +RPGIVHR+DK TSGLL+VAK++ +H+ L EQ +T
Sbjct: 121 ---------------DLSGINGVLRPGIVHRIDKDTSGLLMVAKNDAAHRSLVEQLVNKT 165
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
+ R Y ++ GV G I+ +GRD +R
Sbjct: 166 VTRRYKAIVHGVIPHDYGTIDAPIGRDKRDR 196
>D7D095_GEOSC (tr|D7D095) Pseudouridine synthase OS=Geobacillus sp. (strain
C56-T3) GN=GC56T3_2435 PE=3 SV=1
Length = 304
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 86/211 (40%), Positives = 117/211 (55%), Gaps = 30/211 (14%)
Query: 83 RLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAV 142
R+D I+ SR++VQ IK+GLV VNG+ V K ++ ++GD + + E + L
Sbjct: 16 RIDKVIAALNEEWSRSQVQQWIKNGLVTVNGQTV-KANYKCEAGDSVAVSPPEPEPLHVE 74
Query: 143 PEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAY 202
PE IPLDI YEDE +LV+NKP MVVHPAPG+ GTLVN +L HC
Sbjct: 75 PEPIPLDIYYEDEDVLVVNKPRGMVVHPAPGHMRGTLVNALLAHCR-------------- 120
Query: 203 TEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRT 262
G +RPGIVHR+DK TSGLL+VAK++ +H+ L EQ +T
Sbjct: 121 ---------------DLSGINGVLRPGIVHRIDKDTSGLLMVAKNDAAHRSLVEQLVNKT 165
Query: 263 IKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
+ R Y ++ GV G I+ +GRD +R
Sbjct: 166 VTRRYKAIVHGVIPHDYGTIDAPIGRDKRDR 196