Miyakogusa Predicted Gene

Lj1g3v2127240.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2127240.1 Non Chatacterized Hit- tr|C0JP24|C0JP24_LOTJA
Putative basic helix-loop-helix protein BHLH6 OS=Lotus,44.21,0.000003,
,gene.Ljchr1_pseudomol_20120830.path1.gene5072.1
         (178 letters)

Database: trembl 
           41,451,118 sequences; 13,208,986,710 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

C0JP24_LOTJA (tr|C0JP24) Putative basic helix-loop-helix protein...    56   5e-06

>C0JP24_LOTJA (tr|C0JP24) Putative basic helix-loop-helix protein BHLH6 OS=Lotus
           japonicus PE=4 SV=1
          Length = 364

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/95 (44%), Positives = 52/95 (54%), Gaps = 7/95 (7%)

Query: 83  RSRKVPTGRKRGRKPRSEVGS---AILREITEGGGGVDSDIASIQATAER----AGSGGY 135
           R R +   +KR    RSEV S   A L  + EGG  +      ++ +A        SGGY
Sbjct: 266 RLRGLSKKQKRRWPSRSEVVSSAGAELLFVPEGGNSLFDVSTPLEVSAPTPSGACSSGGY 325

Query: 136 FTRATKAWILGKSVGLRYPGSDEEAIRGLAEELEE 170
           FTRA K+ +LGK +GL Y  SD EAIRGL EEL E
Sbjct: 326 FTRAKKSRLLGKVLGLEYDRSDLEAIRGLEEELRE 360