Miyakogusa Predicted Gene

Lj1g3v1465190.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1465190.1 tr|Q2HTD6|Q2HTD6_MEDTR RNA-binding region RNP-1
(RNA recognition motif); Calcium-binding EF-hand OS=,52.17,0.0000004,
,CUFF.27349.1
         (67 letters)

Database: trembl 
           41,451,118 sequences; 13,208,986,710 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q2HTD6_MEDTR (tr|Q2HTD6) RNA-binding region RNP-1 (RNA recogniti...    59   6e-07
A2Q4K6_MEDTR (tr|A2Q4K6) Polyprotein, putative OS=Medicago trunc...    57   2e-06

>Q2HTD6_MEDTR (tr|Q2HTD6) RNA-binding region RNP-1 (RNA recognition motif);
           Calcium-binding EF-hand OS=Medicago truncatula
           GN=MtrDRAFT_AC150443g37v2 PE=4 SV=2
          Length = 559

 Score = 58.9 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 24/46 (52%), Positives = 35/46 (76%)

Query: 3   QQECKLTVVEMKVLQWLNGYTIHDRIMNDIFREKTRLTPIVEKMVE 48
           Q E +++V EM++L+W++G T HDRI ND  RE+  + PIVEK+VE
Sbjct: 300 QHENQVSVAEMRMLRWMSGKTRHDRIRNDTIRERVGVAPIVEKLVE 345


>A2Q4K6_MEDTR (tr|A2Q4K6) Polyprotein, putative OS=Medicago truncatula
           GN=MtrDRAFT_AC157502g26v2 PE=4 SV=1
          Length = 137

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/46 (54%), Positives = 36/46 (78%)

Query: 3   QQECKLTVVEMKVLQWLNGYTIHDRIMNDIFREKTRLTPIVEKMVE 48
           Q E +++VVEM++L+W++G T HDRI ND  RE+  + PIVEK+VE
Sbjct: 78  QHENQVSVVEMRMLRWMSGKTRHDRIRNDTIRERVGVAPIVEKLVE 123