Miyakogusa Predicted Gene

Lj1g3v1074630.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1074630.1 Non Chatacterized Hit- tr|Q2HU08|Q2HU08_MEDTR
Polyprotein-like, putative OS=Medicago truncatula GN=M,48.61,0.000005,
,NODE_26671_length_473_cov_110.380547.path1.1
         (69 letters)

Database: trembl 
           41,451,118 sequences; 13,208,986,710 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q1S5K9_MEDTR (tr|Q1S5K9) Reverse transcriptase (RNA-dependent DN...    55   6e-06
Q2HU08_MEDTR (tr|Q2HU08) Polyprotein-like, putative OS=Medicago ...    55   7e-06

>Q1S5K9_MEDTR (tr|Q1S5K9) Reverse transcriptase (RNA-dependent DNA polymerase)
           OS=Medicago truncatula GN=MtrDRAFT_AC147431g58v2 PE=4
           SV=1
          Length = 293

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 34/66 (51%), Positives = 43/66 (65%), Gaps = 8/66 (12%)

Query: 1   MYVDNVILVGNTLSKFGFIKST-HKSYGIKDSGP--YFLRLE-----SEISLCQSKNCFN 52
           +YVD+VIL G+TLS+F  IK   H ++ IKD G   YFL LE     S ISLCQ K C +
Sbjct: 176 VYVDDVILAGDTLSEFNTIKGVLHDAFKIKDIGQLKYFLGLEVAHSKSGISLCQRKYCLD 235

Query: 53  ILKDLG 58
           +L+D G
Sbjct: 236 LLEDSG 241


>Q2HU08_MEDTR (tr|Q2HU08) Polyprotein-like, putative OS=Medicago truncatula
           GN=MtrDRAFT_AC149491g18v2 PE=4 SV=1
          Length = 635

 Score = 55.5 bits (132), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/72 (48%), Positives = 47/72 (65%), Gaps = 11/72 (15%)

Query: 1   MYVDNVILVGNTLSKFGFIKST-HKSYGIKDSG--PYFLRLE-----SEISLCQSKNCFN 52
           +YVD++IL GN+L++F  IK+  H+++ IKD G   YFL LE     S ISLCQ K C +
Sbjct: 291 VYVDDIILAGNSLTEFHIIKNALHQAFKIKDLGILKYFLGLEVAHSHSGISLCQRKYCLD 350

Query: 53  ILKD---LGSWP 61
           +L D   LGS P
Sbjct: 351 LLNDSGLLGSKP 362