Miyakogusa Predicted Gene

Lj1g3v0414710.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0414710.1 tr|E9SEK1|E9SEK1_RUMAL Bacterial surface protein
26-residue PARCEL repeat (3 repeats) OS=Ruminococcu,25.86,0.0000008,
,CUFF.25695.1
         (209 letters)

Database: trembl 
           41,451,118 sequences; 13,208,986,710 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

E9SEK1_RUMAL (tr|E9SEK1) Bacterial surface protein 26-residue PA...    59   1e-06
D1PTJ6_9BACT (tr|D1PTJ6) Putative uncharacterized protein OS=Pre...    57   4e-06
D1W0G2_9BACT (tr|D1W0G2) Bacterial surface protein 26-residue re...    57   5e-06

>E9SEK1_RUMAL (tr|E9SEK1) Bacterial surface protein 26-residue PARCEL repeat (3
           repeats) OS=Ruminococcus albus 8 GN=CUS_5760 PE=4 SV=1
          Length = 975

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 45/174 (25%), Positives = 78/174 (44%), Gaps = 19/174 (10%)

Query: 6   SLNCLSQSFLRSQNCQNQSFLKSLNCQSLNYLNLMSLSCQSLSHLRLMYLNCQSLSYQSL 65
           SL  L  S   + N +N S++   +C SL  +NL SL   +++ +  M+ NC SL+   +
Sbjct: 304 SLTSLDVSRFDTGNVKNMSYMFE-DCSSLTSINLGSLDTSNVTDINSMFYNCSSLTSLDV 362

Query: 66  MFLNCQNLSCLRLMYLNCQNLSYQRLMSQNCQNLSC-QRLFLNCQNLSFLKSLN------ 118
              +  N+  +  M+ NC +L+   L S +   ++    +F  C  L+ L   N      
Sbjct: 363 SGFDTGNVKNMSYMFENCSSLTSINLGSLDTSMVTTIAGMFWGCSGLTKLDVSNFDTSNV 422

Query: 119 ---------CQSLNYLKLMPLSFRSLNYQRLMFLNCQNLSYQRLIMSQNYQNLK 163
                    C +L  L L       + Y   MF  C+ L+   L +S+N++N+K
Sbjct: 423 TSTNNMFNGCSNLEKLDLSSFDTSKVKYMYDMFAGCEKLN--TLTLSENFKNIK 474


>D1PTJ6_9BACT (tr|D1PTJ6) Putative uncharacterized protein OS=Prevotella
           bergensis DSM 17361 GN=HMPREF0645_0281 PE=4 SV=1
          Length = 709

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 87/169 (51%), Gaps = 7/169 (4%)

Query: 19  NCQNQSFLKSLNCQSLNYLNLMSLSCQSLSHLRLMYLNCQSLSYQSLMFLNCQNLSCLRL 78
           N Q+   +++LN + +  +  M  SC++L+ L L   N Q+++    MF  CQ L+ L +
Sbjct: 141 NLQDIKGIRNLNTEKVTDMRSMFDSCETLTSLDLSKFNTQNVTVMGSMFSGCQALTSLDV 200

Query: 79  MYLNCQNLSYQRLMSQNCQNLSCQRLF-LNCQNLSFLKSL--NCQSLNYLKLMPLSFRSL 135
              N Q ++Y   M +NCQ L+   L   N QN++ +  +   CQ+L  L +   + +++
Sbjct: 201 SNFNTQKVTYMSGMFRNCQALTSLDLSNFNTQNVTNMSYMFFGCQALRSLDVSNFNTQNV 260

Query: 136 NYQRLMFLNCQNLSYQRLIMSQ-NYQNLKCLKSL-SFLRSLKCLKFLKF 182
                MF NCQ L+   L +S+ N QN+  +  + S+ R+L  L    F
Sbjct: 261 TNISYMFYNCQALT--SLDVSKFNTQNVTNMSGIFSYCRALTSLDLSNF 307


>D1W0G2_9BACT (tr|D1W0G2) Bacterial surface protein 26-residue repeat protein (3
           repeats) (Fragment) OS=Prevotella timonensis CRIS 5C-B1
           GN=HMPREF9019_0987 PE=4 SV=1
          Length = 270

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 66/127 (51%), Gaps = 3/127 (2%)

Query: 26  LKSLNCQSLNYLNLMSLSCQSLSHLRLMYLNCQSLSYQSLMFLNCQNLSCLRLMYLNCQN 85
           + + N Q +  +N M   C++L+ L L   N + ++    MF +CQ L+ L L   N QN
Sbjct: 21  VSNFNTQKVTNMNGMFEGCKALTSLDLSNFNTRHVTEMGSMFEDCQALTSLDLSNFNTQN 80

Query: 86  LSYQRLMSQNCQNLSCQRLF-LNCQNLSFLKSL--NCQSLNYLKLMPLSFRSLNYQRLMF 142
           ++Y R M +NC+ L+   +   N +N++ +  +   C++L  L L   + R +     MF
Sbjct: 81  VTYMRGMFENCKALTSLDVSNFNTKNVTDMNYMFSGCKALTSLDLSKFNTRKVTNMSYMF 140

Query: 143 LNCQNLS 149
             C++L+
Sbjct: 141 FGCKSLT 147