Miyakogusa Predicted Gene
- Lj1g3v0318000.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v0318000.2 Non Chatacterized Hit- tr|E1Z9B1|E1Z9B1_CHLVA
Putative uncharacterized protein OS=Chlorella
variabil,40.83,3e-17,TIGR00046: RNA methyltransferase, RsmE
family,Ribosomal RNA small subunit methyltransferase E;
Methy,CUFF.25518.2
(239 letters)
Database: trembl
41,451,118 sequences; 13,208,986,710 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
K7N3A7_SOYBN (tr|K7N3A7) Uncharacterized protein OS=Glycine max ... 398 e-109
I3SHD1_MEDTR (tr|I3SHD1) Uncharacterized protein OS=Medicago tru... 397 e-108
F6HBL6_VITVI (tr|F6HBL6) Putative uncharacterized protein OS=Vit... 324 2e-86
B9S803_RICCO (tr|B9S803) Putative uncharacterized protein OS=Ric... 322 6e-86
D7KFU6_ARALL (tr|D7KFU6) Predicted protein OS=Arabidopsis lyrata... 313 3e-83
Q6E297_ARATH (tr|Q6E297) Ribosomal RNA small subunit methyltrans... 310 3e-82
K4B2Q5_SOLLC (tr|K4B2Q5) Uncharacterized protein OS=Solanum lyco... 310 3e-82
R0GLI3_9BRAS (tr|R0GLI3) Uncharacterized protein OS=Capsella rub... 304 2e-80
M5W4K3_PRUPE (tr|M5W4K3) Uncharacterized protein OS=Prunus persi... 300 3e-79
M4DQN1_BRARP (tr|M4DQN1) Uncharacterized protein OS=Brassica rap... 297 2e-78
M0SKM7_MUSAM (tr|M0SKM7) Uncharacterized protein OS=Musa acumina... 291 1e-76
M0WQ59_HORVD (tr|M0WQ59) Uncharacterized protein OS=Hordeum vulg... 277 2e-72
F2DCL5_HORVD (tr|F2DCL5) Predicted protein (Fragment) OS=Hordeum... 276 4e-72
C5WLZ9_SORBI (tr|C5WLZ9) Putative uncharacterized protein Sb01g0... 275 7e-72
Q0DNW7_ORYSJ (tr|Q0DNW7) Os03g0729700 protein (Fragment) OS=Oryz... 275 1e-71
K4AD97_SETIT (tr|K4AD97) Uncharacterized protein OS=Setaria ital... 273 2e-71
I1GNQ2_BRADI (tr|I1GNQ2) Uncharacterized protein OS=Brachypodium... 268 1e-69
A9NTD9_PICSI (tr|A9NTD9) Putative uncharacterized protein OS=Pic... 259 6e-67
Q6E295_ARATH (tr|Q6E295) Methyltransferases OS=Arabidopsis thali... 258 1e-66
M8C2M4_AEGTA (tr|M8C2M4) Ribosomal RNA small subunit methyltrans... 251 1e-64
M7YKL5_TRIUA (tr|M7YKL5) Ribosomal RNA small subunit methyltrans... 251 2e-64
I1PF37_ORYGL (tr|I1PF37) Uncharacterized protein (Fragment) OS=O... 249 5e-64
B9GIC4_POPTR (tr|B9GIC4) Predicted protein OS=Populus trichocarp... 245 7e-63
D8QWL8_SELML (tr|D8QWL8) Putative uncharacterized protein OS=Sel... 214 2e-53
A5BL94_VITVI (tr|A5BL94) Putative uncharacterized protein OS=Vit... 214 2e-53
A9RSI2_PHYPA (tr|A9RSI2) Predicted protein OS=Physcomitrella pat... 213 4e-53
I1LED0_SOYBN (tr|I1LED0) Uncharacterized protein OS=Glycine max ... 205 1e-50
D8RUF1_SELML (tr|D8RUF1) Putative uncharacterized protein OS=Sel... 205 1e-50
Q6E296_ARATH (tr|Q6E296) Putative uncharacterized protein OS=Ara... 178 2e-42
B9FBC3_ORYSJ (tr|B9FBC3) Putative uncharacterized protein OS=Ory... 176 7e-42
D7MMJ2_ARALL (tr|D7MMJ2) Putative uncharacterized protein OS=Ara... 155 1e-35
A4SBF0_OSTLU (tr|A4SBF0) Predicted protein (Fragment) OS=Ostreoc... 120 5e-25
E1Z9B1_CHLVA (tr|E1Z9B1) Putative uncharacterized protein OS=Chl... 94 4e-17
C1FIT6_MICSR (tr|C1FIT6) Predicted protein OS=Micromonas sp. (st... 93 6e-17
A5WA19_PSEP1 (tr|A5WA19) Ribosomal RNA small subunit methyltrans... 90 7e-16
I3UU01_PSEPU (tr|I3UU01) Ribosomal RNA small subunit methyltrans... 90 7e-16
M7R4H1_PSEPU (tr|M7R4H1) 16S ribosomal RNA methyltransferase Rsm... 89 8e-16
D6Z0J8_DESAT (tr|D6Z0J8) Ribosomal RNA small subunit methyltrans... 89 1e-15
F0IG88_9FLAO (tr|F0IG88) Ribosomal RNA small subunit methyltrans... 89 2e-15
D9SIB7_GALCS (tr|D9SIB7) Ribosomal RNA small subunit methyltrans... 89 2e-15
Q00VQ4_OSTTA (tr|Q00VQ4) WGS project CAID00000000 data, contig c... 89 2e-15
J3B7Z1_9BURK (tr|J3B7Z1) Ribosomal RNA small subunit methyltrans... 88 2e-15
I5CD20_9BURK (tr|I5CD20) Ribosomal RNA small subunit methyltrans... 88 2e-15
A6C9W4_9PLAN (tr|A6C9W4) Ribosomal RNA small subunit methyltrans... 88 2e-15
Q88D43_PSEPK (tr|Q88D43) Ribosomal RNA small subunit methyltrans... 88 3e-15
E4R9E0_PSEPB (tr|E4R9E0) Ribosomal RNA small subunit methyltrans... 88 3e-15
L0FR48_PSEPU (tr|L0FR48) Ribosomal RNA small subunit methyltrans... 88 3e-15
N9UBH7_PSEPU (tr|N9UBH7) 16S ribosomal RNA methyltransferase Rsm... 87 3e-15
I7AWE4_PSEPU (tr|I7AWE4) Ribosomal RNA small subunit methyltrans... 87 3e-15
D5SXZ3_PLAL2 (tr|D5SXZ3) Ribosomal RNA small subunit methyltrans... 87 5e-15
B0VH27_CLOAI (tr|B0VH27) Ribosomal RNA small subunit methyltrans... 87 6e-15
I4NAT8_9PSED (tr|I4NAT8) Ribosomal RNA small subunit methyltrans... 87 6e-15
F8FVB7_PSEPU (tr|F8FVB7) Ribosomal RNA small subunit methyltrans... 86 8e-15
C1N1B7_MICPC (tr|C1N1B7) Predicted protein (Fragment) OS=Micromo... 86 8e-15
B0KM10_PSEPG (tr|B0KM10) Ribosomal RNA small subunit methyltrans... 86 1e-14
B2JGY9_BURP8 (tr|B2JGY9) Ribosomal RNA small subunit methyltrans... 86 1e-14
F3HD58_PSEYM (tr|F3HD58) Ribosomal RNA small subunit methyltrans... 86 1e-14
C2FZ62_9SPHI (tr|C2FZ62) Ribosomal RNA small subunit methyltrans... 85 2e-14
E2MM37_PSEUB (tr|E2MM37) Ribosomal RNA small subunit methyltrans... 85 2e-14
I2BR80_PSEFL (tr|I2BR80) Ribosomal RNA small subunit methyltrans... 85 2e-14
K2SF10_9PSED (tr|K2SF10) Ribosomal RNA small subunit methyltrans... 85 2e-14
Q87V65_PSESM (tr|Q87V65) Ribosomal RNA small subunit methyltrans... 84 3e-14
F3IG15_PSESL (tr|F3IG15) Ribosomal RNA small subunit methyltrans... 84 3e-14
L7GAN6_PSESX (tr|L7GAN6) Ribosomal RNA small subunit methyltrans... 84 3e-14
L7G4X3_PSESX (tr|L7G4X3) Ribosomal RNA small subunit methyltrans... 84 3e-14
F3FKK7_PSESX (tr|F3FKK7) Ribosomal RNA small subunit methyltrans... 84 3e-14
I3YZ54_AEQSU (tr|I3YZ54) Ribosomal RNA small subunit methyltrans... 84 3e-14
F2ZF68_9PSED (tr|F2ZF68) Ribosomal RNA small subunit methyltrans... 84 4e-14
L7H6C2_PSESX (tr|L7H6C2) Ribosomal RNA small subunit methyltrans... 84 4e-14
F3GX11_PSESX (tr|F3GX11) Ribosomal RNA small subunit methyltrans... 84 4e-14
J2VGQ2_9PSED (tr|J2VGQ2) Ribosomal RNA small subunit methyltrans... 84 4e-14
J2NZW0_9PSED (tr|J2NZW0) Ribosomal RNA small subunit methyltrans... 84 4e-14
C0BMY5_9BACT (tr|C0BMY5) Ribosomal RNA small subunit methyltrans... 84 5e-14
E2XZM8_PSEFL (tr|E2XZM8) Ribosomal RNA small subunit methyltrans... 84 5e-14
Q4ZZ99_PSEU2 (tr|Q4ZZ99) Ribosomal RNA small subunit methyltrans... 83 6e-14
H8KMC8_SOLCM (tr|H8KMC8) Ribosomal RNA small subunit methyltrans... 83 6e-14
F3JIS6_PSESX (tr|F3JIS6) Ribosomal RNA small subunit methyltrans... 83 6e-14
K2UB36_PSESY (tr|K2UB36) Ribosomal RNA small subunit methyltrans... 83 6e-14
F3GDF9_PSESJ (tr|F3GDF9) Ribosomal RNA small subunit methyltrans... 83 6e-14
J2NCH6_9PSED (tr|J2NCH6) Ribosomal RNA small subunit methyltrans... 83 6e-14
J3DLG7_9PSED (tr|J3DLG7) Ribosomal RNA small subunit methyltrans... 83 7e-14
F3E0E0_9PSED (tr|F3E0E0) Ribosomal RNA small subunit methyltrans... 83 8e-14
C3K3H4_PSEFS (tr|C3K3H4) Ribosomal RNA small subunit methyltrans... 83 8e-14
J2SN67_9PSED (tr|J2SN67) Ribosomal RNA small subunit methyltrans... 83 8e-14
K2U4K8_PSESY (tr|K2U4K8) Ribosomal RNA small subunit methyltrans... 83 9e-14
A0Q1R1_CLONN (tr|A0Q1R1) Ribosomal RNA small subunit methyltrans... 83 9e-14
K4KNQ6_SIMAS (tr|K4KNQ6) Ribosomal RNA small subunit methyltrans... 83 9e-14
Q39Q75_GEOMG (tr|Q39Q75) Ribosomal RNA small subunit methyltrans... 82 1e-13
H1L5D6_GEOME (tr|H1L5D6) Ribosomal RNA small subunit methyltrans... 82 1e-13
K0WLQ5_PSEFL (tr|K0WLQ5) Ribosomal RNA small subunit methyltrans... 82 1e-13
F3JA78_PSEAP (tr|F3JA78) Ribosomal RNA small subunit methyltrans... 82 1e-13
R5J9L3_9CLOT (tr|R5J9L3) Ribosomal RNA small subunit methyltrans... 82 2e-13
B9LZ50_GEOSF (tr|B9LZ50) Ribosomal RNA small subunit methyltrans... 82 2e-13
F0E2M5_PSEDT (tr|F0E2M5) Ribosomal RNA small subunit methyltrans... 82 2e-13
B1J2X8_PSEPW (tr|B1J2X8) Ribosomal RNA small subunit methyltrans... 82 2e-13
A4C941_9GAMM (tr|A4C941) Ribosomal RNA small subunit methyltrans... 82 2e-13
M4K5U0_9PSED (tr|M4K5U0) 16S ribosomal RNA methyltransferase Rsm... 82 2e-13
L7HG41_PSEFL (tr|L7HG41) Ribosomal RNA small subunit methyltrans... 82 2e-13
F3JXQ5_PSESZ (tr|F3JXQ5) Ribosomal RNA small subunit methyltrans... 82 2e-13
F3E9F1_PSESL (tr|F3E9F1) Ribosomal RNA small subunit methyltrans... 82 2e-13
E7PI03_PSESG (tr|E7PI03) Ribosomal RNA small subunit methyltrans... 82 2e-13
E7PBS6_PSESG (tr|E7PBS6) Ribosomal RNA small subunit methyltrans... 82 2e-13
Q1NJW9_9DELT (tr|Q1NJW9) Ribosomal RNA small subunit methyltrans... 82 2e-13
Q3K5C9_PSEPF (tr|Q3K5C9) Ribosomal RNA small subunit methyltrans... 82 2e-13
N2JEV2_9PSED (tr|N2JEV2) RsmE family RNA methyltransferase OS=Ps... 82 2e-13
A3UG06_9RHOB (tr|A3UG06) Ribosomal RNA small subunit methyltrans... 82 2e-13
A4VRG7_PSEU5 (tr|A4VRG7) Ribosomal RNA small subunit methyltrans... 82 2e-13
J2Y893_9PSED (tr|J2Y893) Ribosomal RNA small subunit methyltrans... 82 2e-13
Q48PC2_PSE14 (tr|Q48PC2) Ribosomal RNA small subunit methyltrans... 81 2e-13
I4K9J5_PSEFL (tr|I4K9J5) Ribosomal RNA small subunit methyltrans... 81 2e-13
I4CNB7_PSEST (tr|I4CNB7) Ribosomal RNA small subunit methyltrans... 81 2e-13
J3D5I5_9PSED (tr|J3D5I5) Ribosomal RNA small subunit methyltrans... 81 2e-13
K6ALR0_PSEVI (tr|K6ALR0) Ribosomal RNA small subunit methyltrans... 81 3e-13
F5Y327_RAMTT (tr|F5Y327) Ribosomal RNA small subunit methyltrans... 81 3e-13
F0SVE6_SYNGF (tr|F0SVE6) Ribosomal RNA small subunit methyltrans... 81 3e-13
I4L5D5_9PSED (tr|I4L5D5) Ribosomal RNA small subunit methyltrans... 81 3e-13
R5NT14_9PORP (tr|R5NT14) Ribosomal RNA small subunit methyltrans... 81 3e-13
D8TKL9_VOLCA (tr|D8TKL9) Putative uncharacterized protein (Fragm... 81 3e-13
A3ZM62_9PLAN (tr|A3ZM62) Ribosomal RNA small subunit methyltrans... 81 4e-13
L7WBU3_NONDD (tr|L7WBU3) Ribosomal RNA small subunit methyltrans... 81 4e-13
F2N687_PSEU6 (tr|F2N687) Ribosomal RNA small subunit methyltrans... 81 4e-13
R5FWR9_9FIRM (tr|R5FWR9) Ribosomal RNA small subunit methyltrans... 80 4e-13
J3FAZ3_9PSED (tr|J3FAZ3) Ribosomal RNA small subunit methyltrans... 80 4e-13
F8H451_PSEUT (tr|F8H451) Ribosomal RNA small subunit methyltrans... 80 4e-13
D6GS05_FILAD (tr|D6GS05) Ribosomal RNA small subunit methyltrans... 80 4e-13
M2TMB2_PSEST (tr|M2TMB2) Ribosomal RNA small subunit methyltrans... 80 4e-13
R6BCC2_9CLOT (tr|R6BCC2) Ribosomal RNA small subunit methyltrans... 80 4e-13
E5AM29_BURRH (tr|E5AM29) Ribosomal RNA small subunit methyltrans... 80 4e-13
F2I0D7_PELSM (tr|F2I0D7) Ribosomal RNA small subunit methyltrans... 80 4e-13
J2QJL1_9PSED (tr|J2QJL1) Ribosomal RNA small subunit methyltrans... 80 5e-13
J2MFF7_9PSED (tr|J2MFF7) Ribosomal RNA small subunit methyltrans... 80 5e-13
F2K662_PSEBN (tr|F2K662) Ribosomal RNA small subunit methyltrans... 80 5e-13
F3I032_PSESF (tr|F3I032) Ribosomal RNA small subunit methyltrans... 80 5e-13
L8NAS6_PSESY (tr|L8NAS6) Ribosomal RNA small subunit methyltrans... 80 5e-13
I4K1L3_PSEFL (tr|I4K1L3) Ribosomal RNA small subunit methyltrans... 80 5e-13
F3EQ99_9PSED (tr|F3EQ99) Ribosomal RNA small subunit methyltrans... 80 5e-13
F3D836_9PSED (tr|F3D836) Ribosomal RNA small subunit methyltrans... 80 6e-13
D7HUD5_PSESS (tr|D7HUD5) Ribosomal RNA small subunit methyltrans... 80 6e-13
C3XCH1_OXAFO (tr|C3XCH1) Ribosomal RNA small subunit methyltrans... 80 6e-13
D7VJ48_9SPHI (tr|D7VJ48) Ribosomal RNA small subunit methyltrans... 80 6e-13
R9GN36_9SPHI (tr|R9GN36) Ribosomal RNA small subunit methyltrans... 80 7e-13
I4JR01_PSEST (tr|I4JR01) Ribosomal RNA small subunit methyltrans... 80 7e-13
K6CD75_PSEST (tr|K6CD75) Ribosomal RNA small subunit methyltrans... 80 8e-13
H0TCY7_9BRAD (tr|H0TCY7) Ribosomal RNA small subunit methyltrans... 80 8e-13
D7JG72_9BACT (tr|D7JG72) Ribosomal RNA small subunit methyltrans... 80 8e-13
Q5QVM6_IDILO (tr|Q5QVM6) Ribosomal RNA small subunit methyltrans... 80 8e-13
B3ENQ5_CHLPB (tr|B3ENQ5) Ribosomal RNA small subunit methyltrans... 80 8e-13
R4VEM9_9GAMM (tr|R4VEM9) 16S ribosomal RNA methyltransferase Rsm... 80 8e-13
H0JG53_9PSED (tr|H0JG53) Ribosomal RNA small subunit methyltrans... 79 9e-13
M7Y4V9_9RHIZ (tr|M7Y4V9) 16S rRNA m3U1498 methyltransferase OS=C... 79 9e-13
L0GFY1_PSEST (tr|L0GFY1) Ribosomal RNA small subunit methyltrans... 79 9e-13
J8VDU7_PSEPU (tr|J8VDU7) Ribosomal RNA small subunit methyltrans... 79 9e-13
H1DJS4_9PORP (tr|H1DJS4) Ribosomal RNA small subunit methyltrans... 79 1e-12
R5VFQ1_9PORP (tr|R5VFQ1) Ribosomal RNA small subunit methyltrans... 79 1e-12
E8YFB5_9BURK (tr|E8YFB5) Ribosomal RNA small subunit methyltrans... 79 1e-12
I4ADA0_DESDJ (tr|I4ADA0) Ribosomal RNA small subunit methyltrans... 79 1e-12
J2XVY6_PSEFL (tr|J2XVY6) Ribosomal RNA small subunit methyltrans... 79 1e-12
B4D419_9BACT (tr|B4D419) Ribosomal RNA small subunit methyltrans... 79 1e-12
Q1YUX3_9GAMM (tr|Q1YUX3) Ribosomal RNA small subunit methyltrans... 79 1e-12
F9Z9X1_ODOSD (tr|F9Z9X1) Ribosomal RNA small subunit methyltrans... 79 2e-12
C1DI82_AZOVD (tr|C1DI82) Ribosomal RNA small subunit methyltrans... 79 2e-12
M9YI32_AZOVI (tr|M9YI32) 16S ribosomal RNA methyltransferase Rsm... 79 2e-12
M9Y1M0_AZOVI (tr|M9Y1M0) 16S ribosomal RNA methyltransferase Rsm... 79 2e-12
F4QSY5_9CAUL (tr|F4QSY5) Ribosomal RNA small subunit methyltrans... 78 2e-12
B9E044_CLOK1 (tr|B9E044) Ribosomal RNA small subunit methyltrans... 78 2e-12
A5N6M5_CLOK5 (tr|A5N6M5) Ribosomal RNA small subunit methyltrans... 78 2e-12
J2SWP0_9PSED (tr|J2SWP0) Ribosomal RNA small subunit methyltrans... 78 2e-12
K2QJP0_9FLAO (tr|K2QJP0) Ribosomal RNA small subunit methyltrans... 78 2e-12
K5XGK5_9PSED (tr|K5XGK5) Ribosomal RNA small subunit methyltrans... 78 2e-12
I6ZB69_PSEST (tr|I6ZB69) Ribosomal RNA small subunit methyltrans... 78 2e-12
Q0G3C3_9RHIZ (tr|Q0G3C3) Ribosomal RNA small subunit methyltrans... 78 2e-12
J3FQQ2_9PSED (tr|J3FQQ2) Ribosomal RNA small subunit methyltrans... 78 3e-12
B3PR91_RHIE6 (tr|B3PR91) Ribosomal RNA small subunit methyltrans... 78 3e-12
H7EV63_PSEST (tr|H7EV63) Ribosomal RNA small subunit methyltrans... 78 3e-12
G8Q2L2_PSEFL (tr|G8Q2L2) Ribosomal RNA small subunit methyltrans... 78 3e-12
K1Z8Q9_9BACT (tr|K1Z8Q9) Ribosomal RNA small subunit methyltrans... 78 3e-12
J2MEF7_9PSED (tr|J2MEF7) Ribosomal RNA small subunit methyltrans... 78 3e-12
J2XTR7_9PSED (tr|J2XTR7) Ribosomal RNA small subunit methyltrans... 78 3e-12
I4XXG7_9PSED (tr|I4XXG7) Ribosomal RNA small subunit methyltrans... 78 3e-12
L0F9A3_DESDL (tr|L0F9A3) Ribosomal RNA small subunit methyltrans... 78 3e-12
E6X433_CELAD (tr|E6X433) Ribosomal RNA small subunit methyltrans... 78 3e-12
Q1I3V5_PSEE4 (tr|Q1I3V5) Ribosomal RNA small subunit methyltrans... 77 3e-12
R6CMF7_9CLOT (tr|R6CMF7) Ribosomal RNA small subunit methyltrans... 77 3e-12
J1ABL9_9FLAO (tr|J1ABL9) Ribosomal RNA small subunit methyltrans... 77 3e-12
J2WRQ6_9PSED (tr|J2WRQ6) Ribosomal RNA small subunit methyltrans... 77 4e-12
H1NN48_9SPHI (tr|H1NN48) Ribosomal RNA small subunit methyltrans... 77 4e-12
A9LGR8_9BACT (tr|A9LGR8) Ribosomal RNA small subunit methyltrans... 77 4e-12
F6AFX6_PSEF1 (tr|F6AFX6) Ribosomal RNA small subunit methyltrans... 77 4e-12
R6F2X0_9PORP (tr|R6F2X0) Ribosomal RNA small subunit methyltrans... 77 4e-12
K0PT59_9RHIZ (tr|K0PT59) Ribosomal RNA small subunit methyltrans... 77 5e-12
K9NSW5_9PSED (tr|K9NSW5) Ribosomal RNA small subunit methyltrans... 77 5e-12
J9DWF5_9PROT (tr|J9DWF5) Ribosomal RNA small subunit methyltrans... 77 5e-12
E1T9F0_BURSG (tr|E1T9F0) Ribosomal RNA small subunit methyltrans... 77 5e-12
B3PFF3_CELJU (tr|B3PFF3) Ribosomal RNA small subunit methyltrans... 77 5e-12
C5VRP9_CLOBO (tr|C5VRP9) Ribosomal RNA small subunit methyltrans... 77 5e-12
J3G6U6_9PSED (tr|J3G6U6) Ribosomal RNA small subunit methyltrans... 77 5e-12
R5Q7Y7_9PROT (tr|R5Q7Y7) Ribosomal RNA small subunit methyltrans... 77 5e-12
C6XQV6_HIRBI (tr|C6XQV6) Ribosomal RNA small subunit methyltrans... 77 5e-12
J3CER8_9RHIZ (tr|J3CER8) Ribosomal RNA small subunit methyltrans... 77 5e-12
K0DQD4_9BURK (tr|K0DQD4) Ribosomal RNA small subunit methyltrans... 77 6e-12
K1AWS8_PSEFL (tr|K1AWS8) Ribosomal RNA small subunit methyltrans... 77 6e-12
J0PGN5_9PSED (tr|J0PGN5) Ribosomal RNA small subunit methyltrans... 77 6e-12
J3B4E2_9PSED (tr|J3B4E2) Ribosomal RNA small subunit methyltrans... 77 6e-12
Q26BV4_FLABB (tr|Q26BV4) Ribosomal RNA small subunit methyltrans... 77 6e-12
J6DLD2_9RHIZ (tr|J6DLD2) Ribosomal RNA small subunit methyltrans... 77 6e-12
J3GWV9_9PSED (tr|J3GWV9) Ribosomal RNA small subunit methyltrans... 77 6e-12
F0S8Z5_PEDSD (tr|F0S8Z5) Ribosomal RNA small subunit methyltrans... 77 6e-12
J0PBM6_9SPHI (tr|J0PBM6) Ribosomal RNA small subunit methyltrans... 77 6e-12
D3BUV8_POLPA (tr|D3BUV8) Uncharacterized protein OS=Polysphondyl... 77 7e-12
E0XQ15_9BACT (tr|E0XQ15) Ribosomal RNA small subunit methyltrans... 77 7e-12
J3GRR7_9PSED (tr|J3GRR7) Ribosomal RNA small subunit methyltrans... 76 7e-12
A5FB28_FLAJ1 (tr|A5FB28) Ribosomal RNA small subunit methyltrans... 76 7e-12
J0C531_RHILT (tr|J0C531) Ribosomal RNA small subunit methyltrans... 76 9e-12
L0G1V1_ECHVK (tr|L0G1V1) Ribosomal RNA small subunit methyltrans... 76 1e-11
M4WUA7_PSEDE (tr|M4WUA7) 16S ribosomal RNA methyltransferase Rsm... 76 1e-11
Q1ML02_RHIL3 (tr|Q1ML02) Ribosomal RNA small subunit methyltrans... 76 1e-11
J2USJ5_9PSED (tr|J2USJ5) Ribosomal RNA small subunit methyltrans... 76 1e-11
I9NBF3_RHILT (tr|I9NBF3) Ribosomal RNA small subunit methyltrans... 76 1e-11
Q2YC34_NITMU (tr|Q2YC34) Ribosomal RNA small subunit methyltrans... 76 1e-11
A9DUL4_9FLAO (tr|A9DUL4) Ribosomal RNA small subunit methyltrans... 76 1e-11
F2ABG4_RHIET (tr|F2ABG4) Ribosomal RNA small subunit methyltrans... 75 1e-11
B5ZRA8_RHILW (tr|B5ZRA8) Ribosomal RNA small subunit methyltrans... 75 1e-11
J2R6K7_9PSED (tr|J2R6K7) Ribosomal RNA small subunit methyltrans... 75 1e-11
K6UHW8_ACIRA (tr|K6UHW8) Ribosomal RNA small subunit methyltrans... 75 1e-11
N9WGM3_9CLOT (tr|N9WGM3) RsmE family RNA methyltransferase OS=Cl... 75 1e-11
J7SM40_PSEME (tr|J7SM40) Ribosomal RNA small subunit methyltrans... 75 2e-11
H0RSW0_9BRAD (tr|H0RSW0) Ribosomal RNA small subunit methyltrans... 75 2e-11
R7DZR9_9BACT (tr|R7DZR9) Ribosomal RNA small subunit methyltrans... 75 2e-11
L1M2M7_PSEPU (tr|L1M2M7) Ribosomal RNA small subunit methyltrans... 75 2e-11
D2QXU4_PIRSD (tr|D2QXU4) Ribosomal RNA small subunit methyltrans... 75 2e-11
K0VZE2_9RHIZ (tr|K0VZE2) Ribosomal RNA small subunit methyltrans... 75 2e-11
A6EK90_9SPHI (tr|A6EK90) Ribosomal RNA small subunit methyltrans... 75 2e-11
E6Q5D5_9ZZZZ (tr|E6Q5D5) Uncharacterized protein OS=mine drainag... 75 2e-11
F8BMI9_OLICM (tr|F8BMI9) Ribosomal RNA small subunit methyltrans... 75 2e-11
B6JIY7_OLICO (tr|B6JIY7) Ribosomal RNA small subunit methyltrans... 75 2e-11
J2JTR3_9FLAO (tr|J2JTR3) Ribosomal RNA small subunit methyltrans... 75 2e-11
R4RT38_9PSED (tr|R4RT38) Ribosomal RNA small subunit methyltrans... 75 2e-11
B7GKD1_ANOFW (tr|B7GKD1) Ribosomal RNA small subunit methyltrans... 75 2e-11
H0SR75_9BRAD (tr|H0SR75) Ribosomal RNA small subunit methyltrans... 75 2e-11
H0BSE3_9BURK (tr|H0BSE3) Ribosomal RNA small subunit methyltrans... 75 2e-11
F3XTD8_9FLAO (tr|F3XTD8) Ribosomal RNA small subunit methyltrans... 75 2e-11
C3X6A3_OXAFO (tr|C3X6A3) Ribosomal RNA small subunit methyltrans... 75 2e-11
C2M5T7_CAPGI (tr|C2M5T7) Ribosomal RNA small subunit methyltrans... 75 2e-11
Q2KC21_RHIEC (tr|Q2KC21) Ribosomal RNA small subunit methyltrans... 75 2e-11
J2NR80_9PSED (tr|J2NR80) Ribosomal RNA small subunit methyltrans... 75 2e-11
R4XRL9_ALCXX (tr|R4XRL9) Ribosomal RNA small subunit methyltrans... 75 2e-11
D7VXS9_9FLAO (tr|D7VXS9) Ribosomal RNA small subunit methyltrans... 75 3e-11
Q4K4H0_PSEF5 (tr|Q4K4H0) Ribosomal RNA small subunit methyltrans... 75 3e-11
I3Z9S8_BELBD (tr|I3Z9S8) Ribosomal RNA small subunit methyltrans... 75 3e-11
C6VZA6_DYAFD (tr|C6VZA6) Ribosomal RNA small subunit methyltrans... 74 3e-11
F8GIC8_NITSI (tr|F8GIC8) Ribosomal RNA small subunit methyltrans... 74 3e-11
F6B8F8_DESCC (tr|F6B8F8) Ribosomal RNA small subunit methyltrans... 74 3e-11
D3SE57_THISK (tr|D3SE57) Ribosomal RNA small subunit methyltrans... 74 3e-11
F4A492_CLOBO (tr|F4A492) Ribosomal RNA small subunit methyltrans... 74 3e-11
N9DZQ5_ACIRA (tr|N9DZQ5) Uncharacterized protein OS=Acinetobacte... 74 3e-11
J4PP30_ACIRA (tr|J4PP30) Ribosomal RNA small subunit methyltrans... 74 3e-11
D0T2D5_ACIRA (tr|D0T2D5) Ribosomal RNA small subunit methyltrans... 74 3e-11
C6RKC3_ACIRA (tr|C6RKC3) Ribosomal RNA small subunit methyltrans... 74 3e-11
I3IEU7_9GAMM (tr|I3IEU7) Ribosomal RNA small subunit methyltrans... 74 3e-11
H2JD78_9CLOT (tr|H2JD78) Ribosomal RNA small subunit methyltrans... 74 3e-11
G7WJG1_DESOD (tr|G7WJG1) Ribosomal RNA small subunit methyltrans... 74 3e-11
M3J757_9LIST (tr|M3J757) Ribosomal RNA small subunit methyltrans... 74 4e-11
I4YV30_9RHIZ (tr|I4YV30) Ribosomal RNA small subunit methyltrans... 74 4e-11
A0Y9Q6_9GAMM (tr|A0Y9Q6) Ribosomal RNA small subunit methyltrans... 74 4e-11
A5EVW4_DICNV (tr|A5EVW4) Ribosomal RNA small subunit methyltrans... 74 4e-11
H8EIV7_CLOTM (tr|H8EIV7) Ribosomal RNA small subunit methyltrans... 74 4e-11
H8ED39_CLOTM (tr|H8ED39) Ribosomal RNA small subunit methyltrans... 74 4e-11
C7HEM0_CLOTM (tr|C7HEM0) Ribosomal RNA small subunit methyltrans... 74 4e-11
A4A9E3_9GAMM (tr|A4A9E3) Ribosomal RNA small subunit methyltrans... 74 4e-11
E6UMN2_CLOTL (tr|E6UMN2) Ribosomal RNA small subunit methyltrans... 74 4e-11
A3DF22_CLOTH (tr|A3DF22) Ribosomal RNA small subunit methyltrans... 74 4e-11
D1NJB6_CLOTM (tr|D1NJB6) Ribosomal RNA small subunit methyltrans... 74 4e-11
L8K986_9FLAO (tr|L8K986) Ribosomal RNA small subunit methyltrans... 74 4e-11
H0KUS9_9FLAO (tr|H0KUS9) Ribosomal RNA small subunit methyltrans... 74 4e-11
Q2S0Q9_SALRD (tr|Q2S0Q9) Ribosomal RNA small subunit methyltrans... 74 5e-11
D5HB54_SALRM (tr|D5HB54) Ribosomal RNA small subunit methyltrans... 74 5e-11
F0DKX4_9FIRM (tr|F0DKX4) Ribosomal RNA small subunit methyltrans... 74 5e-11
D8GP23_CLOLD (tr|D8GP23) Ribosomal RNA small subunit methyltrans... 74 5e-11
A4J7F0_DESRM (tr|A4J7F0) Ribosomal RNA small subunit methyltrans... 74 5e-11
G2SEV2_RHOMR (tr|G2SEV2) Ribosomal RNA small subunit methyltrans... 74 5e-11
D5BFW3_ZUNPS (tr|D5BFW3) Ribosomal RNA small subunit methyltrans... 74 6e-11
R5BVW7_9BACE (tr|R5BVW7) Ribosomal RNA small subunit methyltrans... 74 6e-11
H0H9R5_RHIRD (tr|H0H9R5) Ribosomal RNA small subunit methyltrans... 74 6e-11
B1G7J2_9BURK (tr|B1G7J2) Ribosomal RNA small subunit methyltrans... 73 6e-11
F7SVW9_ALCXX (tr|F7SVW9) Ribosomal RNA small subunit methyltrans... 73 6e-11
H8MP58_CORCM (tr|H8MP58) Ribosomal RNA small subunit methyltrans... 73 6e-11
A6LRN9_CLOB8 (tr|A6LRN9) Ribosomal RNA small subunit methyltrans... 73 6e-11
D3NSL8_AZOS1 (tr|D3NSL8) Ribosomal RNA small subunit methyltrans... 73 6e-11
D1C4F6_SPHTD (tr|D1C4F6) Ribosomal RNA small subunit methyltrans... 73 6e-11
M5QI31_9PSED (tr|M5QI31) 16S ribosomal RNA methyltransferase Rsm... 73 7e-11
K0WMB7_9BACT (tr|K0WMB7) Ribosomal RNA small subunit methyltrans... 73 7e-11
B8KLD2_9GAMM (tr|B8KLD2) Ribosomal RNA small subunit methyltrans... 73 8e-11
E8UEN6_TAYEM (tr|E8UEN6) Ribosomal RNA small subunit methyltrans... 73 8e-11
E2MRA1_FRANO (tr|E2MRA1) Ribosomal RNA small subunit methyltrans... 73 8e-11
G2PNE9_MURRD (tr|G2PNE9) Ribosomal RNA small subunit methyltrans... 73 8e-11
D5VUX6_CLOB2 (tr|D5VUX6) Ribosomal RNA small subunit methyltrans... 73 9e-11
A7GHH3_CLOBL (tr|A7GHH3) Ribosomal RNA small subunit methyltrans... 73 9e-11
M5JBZ5_9BACI (tr|M5JBZ5) Ribosomal RNA small subunit methyltrans... 73 9e-11
D3IAL1_9BACT (tr|D3IAL1) Ribosomal RNA small subunit methyltrans... 73 9e-11
I3CSJ5_9BURK (tr|I3CSJ5) Ribosomal RNA small subunit methyltrans... 73 9e-11
C6B2H2_RHILS (tr|C6B2H2) Ribosomal RNA small subunit methyltrans... 73 1e-10
Q8KAZ3_CHLTE (tr|Q8KAZ3) Ribosomal RNA small subunit methyltrans... 73 1e-10
I6XFL4_9BURK (tr|I6XFL4) Ribosomal RNA small subunit methyltrans... 72 1e-10
I9N552_RHILT (tr|I9N552) Ribosomal RNA small subunit methyltrans... 72 1e-10
I7JJ16_9BURK (tr|I7JJ16) Ribosomal RNA small subunit methyltrans... 72 1e-10
L0DAQ3_SINAD (tr|L0DAQ3) Ribosomal RNA small subunit methyltrans... 72 1e-10
C1FVT7_CLOBJ (tr|C1FVT7) Ribosomal RNA small subunit methyltrans... 72 1e-10
B1ILM0_CLOBK (tr|B1ILM0) Ribosomal RNA small subunit methyltrans... 72 1e-10
L1LKB6_CLOBO (tr|L1LKB6) Ribosomal RNA small subunit methyltrans... 72 1e-10
E8ZQI5_CLOB0 (tr|E8ZQI5) Ribosomal RNA small subunit methyltrans... 72 1e-10
M1ZTZ6_CLOBO (tr|M1ZTZ6) Ribosomal RNA small subunit methyltrans... 72 1e-10
B1QBC9_CLOBO (tr|B1QBC9) Ribosomal RNA small subunit methyltrans... 72 1e-10
F8L7L7_SIMNZ (tr|F8L7L7) Ribosomal RNA small subunit methyltrans... 72 1e-10
Q1PZD1_9BACT (tr|Q1PZD1) Ribosomal RNA small subunit methyltrans... 72 1e-10
J6HXT3_9FLAO (tr|J6HXT3) Ribosomal RNA small subunit methyltrans... 72 1e-10
B1KZN4_CLOBM (tr|B1KZN4) Ribosomal RNA small subunit methyltrans... 72 1e-10
K5YK82_9PROT (tr|K5YK82) Ribosomal RNA small subunit methyltrans... 72 1e-10
K8EGP6_9CHLO (tr|K8EGP6) Uncharacterized protein OS=Bathycoccus ... 72 1e-10
F8EW33_ZYMMT (tr|F8EW33) Ribosomal RNA small subunit methyltrans... 72 1e-10
L1P614_9FLAO (tr|L1P614) Ribosomal RNA small subunit methyltrans... 72 1e-10
L7EN52_CLOPA (tr|L7EN52) Ribosomal RNA small subunit methyltrans... 72 1e-10
D8K895_NITWC (tr|D8K895) Ribosomal RNA small subunit methyltrans... 72 2e-10
L8MKM9_PSEPS (tr|L8MKM9) Ribosomal RNA small subunit methyltrans... 72 2e-10
B9YB17_9FIRM (tr|B9YB17) Ribosomal RNA small subunit methyltrans... 72 2e-10
C3L3G4_CLOB6 (tr|C3L3G4) Ribosomal RNA small subunit methyltrans... 72 2e-10
G9F640_CLOSG (tr|G9F640) Ribosomal RNA small subunit methyltrans... 72 2e-10
B1QGZ5_CLOBO (tr|B1QGZ5) Ribosomal RNA small subunit methyltrans... 72 2e-10
J7IVT1_DESMD (tr|J7IVT1) Ribosomal RNA small subunit methyltrans... 72 2e-10
A7FXL2_CLOB1 (tr|A7FXL2) Ribosomal RNA small subunit methyltrans... 72 2e-10
A5I637_CLOBH (tr|A5I637) Ribosomal RNA small subunit methyltrans... 72 2e-10
I1DTW7_9GAMM (tr|I1DTW7) Ribosomal RNA small subunit methyltrans... 72 2e-10
J0V8Y6_RHILV (tr|J0V8Y6) Ribosomal RNA small subunit methyltrans... 72 2e-10
G7D3J2_BRAJP (tr|G7D3J2) Ribosomal RNA small subunit methyltrans... 72 2e-10
Q2RWX0_RHORT (tr|Q2RWX0) Ribosomal RNA small subunit methyltrans... 72 2e-10
G2T9M9_RHORU (tr|G2T9M9) Ribosomal RNA small subunit methyltrans... 72 2e-10
A7YU48_FRATU (tr|A7YU48) Ribosomal RNA small subunit methyltrans... 72 2e-10
Q5NFI2_FRATT (tr|Q5NFI2) Ribosomal RNA small subunit methyltrans... 72 2e-10
Q14GY4_FRAT1 (tr|Q14GY4) Ribosomal RNA small subunit methyltrans... 72 2e-10
D2AP53_FRATE (tr|D2AP53) Ribosomal RNA small subunit methyltrans... 72 2e-10
B2SH02_FRATM (tr|B2SH02) Ribosomal RNA small subunit methyltrans... 72 2e-10
A4IXC8_FRATW (tr|A4IXC8) Ribosomal RNA small subunit methyltrans... 72 2e-10
R0J1M8_FRATL (tr|R0J1M8) 16S ribosomal RNA methyltransferase Rsm... 72 2e-10
R0H5W2_FRATL (tr|R0H5W2) 16S ribosomal RNA methyltransferase Rsm... 72 2e-10
R0H2S5_FRATL (tr|R0H2S5) 16S ribosomal RNA methyltransferase Rsm... 72 2e-10
M5UE71_FRATL (tr|M5UE71) 16S ribosomal RNA methyltransferase Rsm... 72 2e-10
K8Y940_FRATL (tr|K8Y940) Ribosomal RNA small subunit methyltrans... 72 2e-10
K5YGV4_FRATL (tr|K5YGV4) Ribosomal RNA small subunit methyltrans... 72 2e-10
K5YCQ2_FRATL (tr|K5YCQ2) Ribosomal RNA small subunit methyltrans... 72 2e-10
K5Y8Q6_FRATL (tr|K5Y8Q6) Ribosomal RNA small subunit methyltrans... 72 2e-10
K5XVW5_FRATL (tr|K5XVW5) Ribosomal RNA small subunit methyltrans... 72 2e-10
K5XVJ8_FRATL (tr|K5XVJ8) Ribosomal RNA small subunit methyltrans... 72 2e-10
H6M223_FRATL (tr|H6M223) Ribosomal RNA small subunit methyltrans... 72 2e-10
H6LVR9_FRATL (tr|H6LVR9) Ribosomal RNA small subunit methyltrans... 72 2e-10
C6YQE9_FRATL (tr|C6YQE9) Ribosomal RNA small subunit methyltrans... 72 2e-10
A7JDA3_FRATL (tr|A7JDA3) Ribosomal RNA small subunit methyltrans... 72 2e-10
B1I696_DESAP (tr|B1I696) Ribosomal RNA small subunit methyltrans... 72 2e-10
R4FZ81_9BACI (tr|R4FZ81) Uncharacterized protein OS=Anoxybacillu... 72 2e-10
D5QJQ6_METTR (tr|D5QJQ6) Ribosomal RNA small subunit methyltrans... 72 2e-10
Q3JEU0_NITOC (tr|Q3JEU0) Ribosomal RNA small subunit methyltrans... 72 2e-10
B6C2P3_9GAMM (tr|B6C2P3) Ribosomal RNA small subunit methyltrans... 72 2e-10
A6UYM9_PSEA7 (tr|A6UYM9) Ribosomal RNA small subunit methyltrans... 72 2e-10
F9DNE2_9BACL (tr|F9DNE2) Ribosomal RNA small subunit methyltrans... 72 2e-10
J7SZ51_CLOSG (tr|J7SZ51) Ribosomal RNA small subunit methyltrans... 72 2e-10
I7K506_PSEPS (tr|I7K506) Ribosomal RNA small subunit methyltrans... 72 2e-10
F4BCJ8_FRACF (tr|F4BCJ8) Ribosomal RNA small subunit methyltrans... 72 2e-10
B2SYQ3_BURPP (tr|B2SYQ3) Ribosomal RNA small subunit methyltrans... 72 2e-10
A0Q7D7_FRATN (tr|A0Q7D7) Ribosomal RNA small subunit methyltrans... 72 2e-10
B4ARF0_FRANO (tr|B4ARF0) Ribosomal RNA small subunit methyltrans... 72 2e-10
J8T8T8_BACAO (tr|J8T8T8) Ribosomal RNA small subunit methyltrans... 72 2e-10
C5BTQ7_TERTT (tr|C5BTQ7) Ribosomal RNA small subunit methyltrans... 72 2e-10
M7XDC2_9BACT (tr|M7XDC2) Ribosomal RNA small subunit methyltrans... 71 2e-10
F0TKM5_RIEAR (tr|F0TKM5) Ribosomal RNA small subunit methyltrans... 71 2e-10
E4TAV5_RIEAD (tr|E4TAV5) Ribosomal RNA small subunit methyltrans... 71 2e-10
L7U3A5_RIEAN (tr|L7U3A5) Ribosomal RNA small subunit methyltrans... 71 2e-10
E6JGK1_RIEAN (tr|E6JGK1) Ribosomal RNA small subunit methyltrans... 71 2e-10
F4BGQ0_FRACN (tr|F4BGQ0) Ribosomal RNA small subunit methyltrans... 71 3e-10
A9C1K2_DELAS (tr|A9C1K2) Ribosomal RNA small subunit methyltrans... 71 3e-10
C0QDC2_DESAH (tr|C0QDC2) Ribosomal RNA small subunit methyltrans... 71 3e-10
R4KCC6_9FIRM (tr|R4KCC6) RNA methyltransferase, RsmE family OS=D... 71 3e-10
J0KY72_RHILT (tr|J0KY72) Ribosomal RNA small subunit methyltrans... 71 3e-10
B1RLG6_CLOPF (tr|B1RLG6) Ribosomal RNA small subunit methyltrans... 71 3e-10
R9CAZ2_9CLOT (tr|R9CAZ2) 16S ribosomal RNA methyltransferase Rsm... 71 3e-10
A7JMU8_FRANO (tr|A7JMU8) Ribosomal RNA small subunit methyltrans... 71 3e-10
A7JIQ1_FRANO (tr|A7JIQ1) Ribosomal RNA small subunit methyltrans... 71 3e-10
A1BIY1_CHLPD (tr|A1BIY1) Ribosomal RNA small subunit methyltrans... 71 3e-10
Q1GQT8_SPHAL (tr|Q1GQT8) Ribosomal RNA small subunit methyltrans... 71 3e-10
D5XAT2_THEPJ (tr|D5XAT2) Ribosomal RNA small subunit methyltrans... 71 3e-10
K6X4W2_9ALTE (tr|K6X4W2) Ribosomal RNA small subunit methyltrans... 71 4e-10
B1V742_CLOPF (tr|B1V742) Ribosomal RNA small subunit methyltrans... 71 4e-10
I4EUY7_MODMB (tr|I4EUY7) Ribosomal RNA small subunit methyltrans... 71 4e-10
J0Z233_9RHIZ (tr|J0Z233) RsmE family RNA methyltransferase OS=Ba... 71 4e-10
E4T3T0_PALPW (tr|E4T3T0) Ribosomal RNA small subunit methyltrans... 71 4e-10
A6ETR3_9BACT (tr|A6ETR3) Ribosomal RNA small subunit methyltrans... 70 4e-10
R5ALX8_9CLOT (tr|R5ALX8) Ribosomal RNA small subunit methyltrans... 70 5e-10
K2KY49_9GAMM (tr|K2KY49) Ribosomal RNA small subunit methyltrans... 70 5e-10
K2GPW3_9GAMM (tr|K2GPW3) Ribosomal RNA small subunit methyltrans... 70 5e-10
G4E718_9GAMM (tr|G4E718) Ribosomal RNA small subunit methyltrans... 70 5e-10
J1T924_9RHIZ (tr|J1T924) Ribosomal RNA small subunit methyltrans... 70 5e-10
H7FUM1_9FLAO (tr|H7FUM1) Ribosomal RNA small subunit methyltrans... 70 5e-10
N1WQX6_9FLAO (tr|N1WQX6) 16S ribosomal RNA methyltransferase Rsm... 70 5e-10
D4XHV9_9BURK (tr|D4XHV9) Ribosomal RNA small subunit methyltrans... 70 5e-10
K8DYG3_9FIRM (tr|K8DYG3) Ribosomal RNA small subunit methyltrans... 70 6e-10
A4BD42_9GAMM (tr|A4BD42) Ribosomal RNA small subunit methyltrans... 70 6e-10
A9HZP6_BORPD (tr|A9HZP6) Ribosomal RNA small subunit methyltrans... 70 6e-10
M1NXB1_BARAA (tr|M1NXB1) Ribosomal RNA small subunit methyltrans... 70 6e-10
A3UB01_CROAH (tr|A3UB01) Ribosomal RNA small subunit methyltrans... 70 6e-10
M1M9R8_9CLOT (tr|M1M9R8) Ribosomal RNA small subunit methyltrans... 70 6e-10
C6PTZ7_9CLOT (tr|C6PTZ7) Ribosomal RNA small subunit methyltrans... 70 6e-10
I4DAQ0_DESAJ (tr|I4DAQ0) Ribosomal RNA small subunit methyltrans... 70 6e-10
R0EG89_9BURK (tr|R0EG89) 16S ribosomal RNA methyltransferase Rsm... 70 6e-10
F7U593_RHIRD (tr|F7U593) Ribosomal RNA small subunit methyltrans... 70 6e-10
A4CK90_ROBBH (tr|A4CK90) Ribosomal RNA small subunit methyltrans... 70 7e-10
H1YEI3_9SPHI (tr|H1YEI3) Ribosomal RNA small subunit methyltrans... 70 7e-10
K2NP56_9RHIZ (tr|K2NP56) Ribosomal RNA small subunit methyltrans... 70 7e-10
Q0C2F7_HYPNA (tr|Q0C2F7) Ribosomal RNA small subunit methyltrans... 70 7e-10
F4C566_SPHS2 (tr|F4C566) Ribosomal RNA small subunit methyltrans... 70 7e-10
Q89DB6_BRAJA (tr|Q89DB6) Ribosomal RNA small subunit methyltrans... 70 7e-10
R5Y993_9BACE (tr|R5Y993) Ribosomal RNA small subunit methyltrans... 70 7e-10
F9ZHZ3_9PROT (tr|F9ZHZ3) Ribosomal RNA small subunit methyltrans... 70 8e-10
F1T9T6_9CLOT (tr|F1T9T6) Ribosomal RNA small subunit methyltrans... 70 8e-10
M5RFW1_9PLAN (tr|M5RFW1) Ribosomal RNA small subunit methyltrans... 70 8e-10
I0YQY1_9CHLO (tr|I0YQY1) Alpha/beta knot OS=Coccomyxa subellipso... 70 8e-10
R6G2T9_9CLOT (tr|R6G2T9) Ribosomal RNA small subunit methyltrans... 70 8e-10
K2BWY6_9BACT (tr|K2BWY6) Ribosomal RNA small subunit methyltrans... 69 9e-10
R7DHL0_9PORP (tr|R7DHL0) Ribosomal RNA small subunit methyltrans... 69 9e-10
K6U5Y1_9CLOT (tr|K6U5Y1) Ribosomal RNA small subunit methyltrans... 69 9e-10
K8NTD0_AFIFE (tr|K8NTD0) Ribosomal RNA small subunit methyltrans... 69 9e-10
J9R8Z2_RIEAN (tr|J9R8Z2) Ribosomal RNA small subunit methyltrans... 69 1e-09
I4EN58_9CHLR (tr|I4EN58) Ribosomal RNA small subunit methyltrans... 69 1e-09
Q7D102_AGRT5 (tr|Q7D102) Ribosomal RNA small subunit methyltrans... 69 1e-09
I3IRJ4_9PLAN (tr|I3IRJ4) Ribosomal RNA small subunit methyltrans... 69 1e-09
L0GVK5_9GAMM (tr|L0GVK5) Ribosomal RNA small subunit methyltrans... 69 1e-09
E3HRE6_ACHXA (tr|E3HRE6) Ribosomal RNA small subunit methyltrans... 69 1e-09
Q0TNT4_CLOP1 (tr|Q0TNT4) Ribosomal RNA small subunit methyltrans... 69 1e-09
H9UAK8_FERPD (tr|H9UAK8) Ribosomal RNA small subunit methyltrans... 69 1e-09
F3KE36_9GAMM (tr|F3KE36) Ribosomal RNA small subunit methyltrans... 69 1e-09
A3YD46_9GAMM (tr|A3YD46) Ribosomal RNA small subunit methyltrans... 69 1e-09
E3GJL2_EUBLK (tr|E3GJL2) Ribosomal RNA small subunit methyltrans... 69 1e-09
C8W4S2_DESAS (tr|C8W4S2) Ribosomal RNA small subunit methyltrans... 69 1e-09
G2UI94_PSEAI (tr|G2UI94) Ribosomal RNA small subunit methyltrans... 69 1e-09
A7HJE6_FERNB (tr|A7HJE6) Ribosomal RNA small subunit methyltrans... 69 1e-09
G9S7Q4_9PORP (tr|G9S7Q4) Ribosomal RNA small subunit methyltrans... 69 1e-09
A5ECJ7_BRASB (tr|A5ECJ7) Ribosomal RNA small subunit methyltrans... 69 1e-09
B4S577_PROA2 (tr|B4S577) Ribosomal RNA small subunit methyltrans... 69 1e-09
L9JGV7_9DELT (tr|L9JGV7) Ribosomal RNA small subunit methyltrans... 69 1e-09
F6AQY2_DELSC (tr|F6AQY2) Ribosomal RNA small subunit methyltrans... 69 1e-09
A6GSP4_9BURK (tr|A6GSP4) Ribosomal RNA small subunit methyltrans... 69 1e-09
Q11UP9_CYTH3 (tr|Q11UP9) Ribosomal RNA small subunit methyltrans... 69 1e-09
C8S1L6_9RHOB (tr|C8S1L6) Ribosomal RNA small subunit methyltrans... 69 1e-09
E8RV55_ASTEC (tr|E8RV55) Ribosomal RNA small subunit methyltrans... 69 1e-09
Q2A4A9_FRATH (tr|Q2A4A9) Ribosomal RNA small subunit methyltrans... 69 1e-09
Q0BMP1_FRATO (tr|Q0BMP1) Ribosomal RNA small subunit methyltrans... 69 1e-09
A7NB54_FRATF (tr|A7NB54) Ribosomal RNA small subunit methyltrans... 69 1e-09
K7XFY6_FRATU (tr|K7XFY6) Ribosomal RNA small subunit methyltrans... 69 1e-09
K0E7E7_FRATU (tr|K0E7E7) Ribosomal RNA small subunit methyltrans... 69 1e-09
H5YB69_9BRAD (tr|H5YB69) Ribosomal RNA small subunit methyltrans... 69 1e-09
G4EMV5_MYCIO (tr|G4EMV5) Ribosomal RNA small subunit methyltrans... 69 2e-09
F0L6T6_AGRSH (tr|F0L6T6) Ribosomal RNA small subunit methyltrans... 69 2e-09
A4XPB9_PSEMY (tr|A4XPB9) Ribosomal RNA small subunit methyltrans... 69 2e-09
J0ZCZ6_9RHIZ (tr|J0ZCZ6) RsmE family RNA methyltransferase OS=Ba... 69 2e-09
I2QHM1_9BRAD (tr|I2QHM1) Ribosomal RNA small subunit methyltrans... 69 2e-09
K2KEQ6_9PROT (tr|K2KEQ6) Ribosomal RNA small subunit methyltrans... 69 2e-09
M7EEE4_BURPE (tr|M7EEE4) 16S ribosomal RNA methyltransferase Rsm... 69 2e-09
B2H0D7_BURPE (tr|B2H0D7) Ribosomal RNA small subunit methyltrans... 69 2e-09
R7K8V1_9FIRM (tr|R7K8V1) Ribosomal RNA small subunit methyltrans... 69 2e-09
G2L5F5_PSEAI (tr|G2L5F5) Ribosomal RNA small subunit methyltrans... 69 2e-09
N9SN79_9GAMM (tr|N9SN79) Uncharacterized protein OS=Acinetobacte... 69 2e-09
N8XJ06_9GAMM (tr|N8XJ06) Uncharacterized protein OS=Acinetobacte... 69 2e-09
Q21NJ8_SACD2 (tr|Q21NJ8) Ribosomal RNA small subunit methyltrans... 69 2e-09
K1DFK2_PSEAI (tr|K1DFK2) Ribosomal RNA small subunit methyltrans... 68 2e-09
K1CUH6_PSEAI (tr|K1CUH6) Ribosomal RNA small subunit methyltrans... 68 2e-09
G5FW18_9PSED (tr|G5FW18) Ribosomal RNA small subunit methyltrans... 68 2e-09
Q892R3_CLOTE (tr|Q892R3) Ribosomal RNA small subunit methyltrans... 68 2e-09
K4IXM3_PSYTT (tr|K4IXM3) Ribosomal RNA small subunit methyltrans... 68 2e-09
L0LJE1_RHITR (tr|L0LJE1) Ribosomal RNA small subunit methyltrans... 68 2e-09
G7M1J0_9CLOT (tr|G7M1J0) Ribosomal RNA small subunit methyltrans... 68 2e-09
R8VT83_9CLOT (tr|R8VT83) RsmE family RNA methyltransferase OS=Bu... 68 2e-09
R9CHZ9_FLAME (tr|R9CHZ9) Uncharacterized protein OS=Elizabethkin... 68 2e-09
G4LH91_PSEAI (tr|G4LH91) Ribosomal RNA small subunit methyltrans... 68 2e-09
F5KUJ0_PSEAI (tr|F5KUJ0) Ribosomal RNA small subunit methyltrans... 68 2e-09
E3A614_PSEAI (tr|E3A614) Ribosomal RNA small subunit methyltrans... 68 2e-09
Q9I694_PSEAE (tr|Q9I694) Ribosomal RNA small subunit methyltrans... 68 2e-09
B7V406_PSEA8 (tr|B7V406) Ribosomal RNA small subunit methyltrans... 68 2e-09
R8Z6A9_PSEAI (tr|R8Z6A9) 16S ribosomal RNA methyltransferase Rsm... 68 2e-09
N2CKN6_PSEAI (tr|N2CKN6) RsmE family RNA methyltransferase OS=Ps... 68 2e-09
N2CJQ6_9PSED (tr|N2CJQ6) RsmE family RNA methyltransferase OS=Ps... 68 2e-09
M3BP69_PSEAI (tr|M3BP69) Ribosomal RNA small subunit methyltrans... 68 2e-09
M1YTI8_PSEAI (tr|M1YTI8) Ribosomal RNA small subunit methyltrans... 68 2e-09
K1DS67_PSEAI (tr|K1DS67) Ribosomal RNA small subunit methyltrans... 68 2e-09
K1C235_PSEAI (tr|K1C235) Ribosomal RNA small subunit methyltrans... 68 2e-09
K0YGA1_PSEAI (tr|K0YGA1) Ribosomal RNA small subunit methyltrans... 68 2e-09
I6RFJ4_PSEAI (tr|I6RFJ4) Ribosomal RNA small subunit methyltrans... 68 2e-09
I1ABV3_PSEAI (tr|I1ABV3) Ribosomal RNA small subunit methyltrans... 68 2e-09
H3TJL0_PSEAE (tr|H3TJL0) Ribosomal RNA small subunit methyltrans... 68 2e-09
H3T5J9_PSEAE (tr|H3T5J9) Ribosomal RNA small subunit methyltrans... 68 2e-09
F5KB77_PSEAI (tr|F5KB77) Ribosomal RNA small subunit methyltrans... 68 2e-09
A3LHM7_PSEAI (tr|A3LHM7) Ribosomal RNA small subunit methyltrans... 68 2e-09
A3L008_PSEAI (tr|A3L008) Ribosomal RNA small subunit methyltrans... 68 2e-09
K1DSB1_PSEAI (tr|K1DSB1) Ribosomal RNA small subunit methyltrans... 68 2e-09
A3WTB1_9BRAD (tr|A3WTB1) Ribosomal RNA small subunit methyltrans... 68 2e-09
>K7N3A7_SOYBN (tr|K7N3A7) Uncharacterized protein OS=Glycine max PE=4 SV=1
Length = 329
Score = 398 bits (1023), Expect = e-109, Method: Compositional matrix adjust.
Identities = 194/242 (80%), Positives = 216/242 (89%), Gaps = 3/242 (1%)
Query: 1 MLQTLVPVTFRFVNRSWLPSLCVRAF---SSSSEYGDQSRGGLPRFFSETLPPSKGNVVR 57
MLQTL V RFV+RSWL +L VRA SSSS+YGDQSRGGLPRF+SETLPPSKG+V+R
Sbjct: 42 MLQTLGGVIPRFVSRSWLRNLTVRAMAFSSSSSDYGDQSRGGLPRFYSETLPPSKGSVIR 101
Query: 58 VQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPPPNTQ 117
VQGDEFWHMTKVLRL+ +DRVQLFNGKG LVEGCI+++DRTG+DFVAL D+ IPP NTQ
Sbjct: 102 VQGDEFWHMTKVLRLTTNDRVQLFNGKGSLVEGCIQSIDRTGLDFVALNDLISIPPQNTQ 161
Query: 118 LHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSSSISENRVDRLERVILAASKQC 177
LHVF+GFGTLKGGRADWLVEKCTE GA+SVTPLLTE S SISENRVDRL+RVILAASKQ
Sbjct: 162 LHVFAGFGTLKGGRADWLVEKCTEFGANSVTPLLTEHSPSISENRVDRLKRVILAASKQS 221
Query: 178 QRLHEMIFKPPVDIDDLSHLIAQSKLPLIATAKATPVLNALTSLEKQASGLIIIGPEGDF 237
QRLHEM+ K P++IDDL HLIAQSKL L+ATAKATPVL+AL SLEK+ SGLIIIGPEGDF
Sbjct: 222 QRLHEMVLKHPIEIDDLLHLIAQSKLSLVATAKATPVLSALASLEKETSGLIIIGPEGDF 281
Query: 238 TE 239
TE
Sbjct: 282 TE 283
>I3SHD1_MEDTR (tr|I3SHD1) Uncharacterized protein OS=Medicago truncatula PE=2
SV=1
Length = 280
Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust.
Identities = 193/240 (80%), Positives = 214/240 (89%), Gaps = 1/240 (0%)
Query: 1 MLQTLV-PVTFRFVNRSWLPSLCVRAFSSSSEYGDQSRGGLPRFFSETLPPSKGNVVRVQ 59
MLQTLV P FRF NR L R S +S+YGDQSRGGLPRF+SE LPPSKGNV+RV+
Sbjct: 1 MLQTLVVPARFRFANRISLRRSLSRIRSFNSDYGDQSRGGLPRFYSEILPPSKGNVIRVK 60
Query: 60 GDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPPPNTQLH 119
GDEFWHMTKVLRLS + RVQLFNGKGGLVEGCI+N+DRTG+DF+ALTD++++PP N QLH
Sbjct: 61 GDEFWHMTKVLRLSTNARVQLFNGKGGLVEGCIQNIDRTGLDFIALTDLKLVPPQNFQLH 120
Query: 120 VFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSSSISENRVDRLERVILAASKQCQR 179
VFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERS SISENRVDRLERVILAASKQCQR
Sbjct: 121 VFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSPSISENRVDRLERVILAASKQCQR 180
Query: 180 LHEMIFKPPVDIDDLSHLIAQSKLPLIATAKATPVLNALTSLEKQASGLIIIGPEGDFTE 239
LHEMI KPPV+I D+ HLIAQSKL L+ATA+ATPVLNALTS EK+ SGLI++GPEGDFTE
Sbjct: 181 LHEMILKPPVEIGDILHLIAQSKLSLVATAEATPVLNALTSPEKETSGLIVVGPEGDFTE 240
>F6HBL6_VITVI (tr|F6HBL6) Putative uncharacterized protein OS=Vitis vinifera
GN=VIT_03s0088g00280 PE=4 SV=1
Length = 454
Score = 324 bits (830), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 164/234 (70%), Positives = 193/234 (82%), Gaps = 4/234 (1%)
Query: 10 FRFVN---RSWLPSLCVRAFSSSSEYG-DQSRGGLPRFFSETLPPSKGNVVRVQGDEFWH 65
+RF RSW S +R+FSSSS + DQSRGGLPRFFSE LPPSKG +VRVQGDEFWH
Sbjct: 175 YRFAELLPRSWRRSTALRSFSSSSSFFSDQSRGGLPRFFSEVLPPSKGGIVRVQGDEFWH 234
Query: 66 MTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPPPNTQLHVFSGFG 125
MTKVLRLS +DRV+LFNGKGGLVEG I +DRTG+DF+AL D +++ P +++ HVF+ FG
Sbjct: 235 MTKVLRLSVNDRVELFNGKGGLVEGSINRIDRTGLDFIALEDPKLVLPQSSRWHVFAAFG 294
Query: 126 TLKGGRADWLVEKCTELGASSVTPLLTERSSSISENRVDRLERVILAASKQCQRLHEMIF 185
TLKGGRADWLVEKCTELG SSVTPLLTERS SISENRVDRL+RVILAA+KQCQRLHEM
Sbjct: 295 TLKGGRADWLVEKCTELGTSSVTPLLTERSPSISENRVDRLQRVILAAAKQCQRLHEMTL 354
Query: 186 KPPVDIDDLSHLIAQSKLPLIATAKATPVLNALTSLEKQASGLIIIGPEGDFTE 239
PP ID L ++ QSKL L+A A+ATPV + LTS ++++GL+IIGPEGDFTE
Sbjct: 355 NPPTTIDSLLPIVTQSKLSLVAVAEATPVFSVLTSSRRESTGLMIIGPEGDFTE 408
>B9S803_RICCO (tr|B9S803) Putative uncharacterized protein OS=Ricinus communis
GN=RCOM_1383270 PE=4 SV=1
Length = 290
Score = 322 bits (825), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 163/242 (67%), Positives = 193/242 (79%), Gaps = 3/242 (1%)
Query: 1 MLQTLVPVTFRF---VNRSWLPSLCVRAFSSSSEYGDQSRGGLPRFFSETLPPSKGNVVR 57
M ++P+ RF + R WL L +RA+SSSSEY +QSRGGLPRFF E LP SKG +VR
Sbjct: 3 MQALMIPIRPRFTELLTRQWLKPLSLRAYSSSSEYSNQSRGGLPRFFCEILPSSKGGIVR 62
Query: 58 VQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPPPNTQ 117
VQGDEFWH+ KVLRLS DR++LFNGKG LVEGCI +DRTG+DFVA+ D +I+ P +
Sbjct: 63 VQGDEFWHIVKVLRLSISDRIELFNGKGALVEGCIERIDRTGLDFVAVNDPKIVLPQTIK 122
Query: 118 LHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSSSISENRVDRLERVILAASKQC 177
HVF+ FG+LKGGRADWLVEKCTELGA SVTPLLTERS SIS+NRVDRLERVILAA+KQC
Sbjct: 123 WHVFAAFGSLKGGRADWLVEKCTELGAHSVTPLLTERSPSISDNRVDRLERVILAATKQC 182
Query: 178 QRLHEMIFKPPVDIDDLSHLIAQSKLPLIATAKATPVLNALTSLEKQASGLIIIGPEGDF 237
QRLHEM+ PP ++ L LIA SKL +A A+ATPV+N L S K++SGLII+GPEGDF
Sbjct: 183 QRLHEMVLNPPTKVEGLLPLIADSKLSFLAAAEATPVVNVLASSRKESSGLIIVGPEGDF 242
Query: 238 TE 239
TE
Sbjct: 243 TE 244
>D7KFU6_ARALL (tr|D7KFU6) Predicted protein OS=Arabidopsis lyrata subsp. lyrata
GN=ARALYDRAFT_682040 PE=4 SV=1
Length = 295
Score = 313 bits (803), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 152/232 (65%), Positives = 183/232 (78%), Gaps = 7/232 (3%)
Query: 15 RSWLPSLCVRAFSSSSEYG-------DQSRGGLPRFFSETLPPSKGNVVRVQGDEFWHMT 67
RSWLP ++F+S S +QSRGGLPRFFS+ LP KG VVRVQG EFWHM
Sbjct: 20 RSWLPPSSFKSFASVSSSPPSDSDLRNQSRGGLPRFFSDDLPSRKGGVVRVQGSEFWHMA 79
Query: 68 KVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPPPNTQLHVFSGFGTL 127
KVLRL +DRV+LFNGKGGLVEGCI+++D+TG+DF+A D ++I P Q VF+ FGTL
Sbjct: 80 KVLRLKQEDRVELFNGKGGLVEGCIQSIDKTGVDFIAQEDQKVILPQGIQWQVFAAFGTL 139
Query: 128 KGGRADWLVEKCTELGASSVTPLLTERSSSISENRVDRLERVILAASKQCQRLHEMIFKP 187
KGGRADWLVEKCTELGASSVTPLLTERSS ISENRVDRLERV AA+KQCQRLH+M+ P
Sbjct: 140 KGGRADWLVEKCTELGASSVTPLLTERSSIISENRVDRLERVSFAAAKQCQRLHQMVLNP 199
Query: 188 PVDIDDLSHLIAQSKLPLIATAKATPVLNALTSLEKQASGLIIIGPEGDFTE 239
P+ D L I++SKL L+ATA+ATP+LNA+ S K+ SG++I+GPEGDFT+
Sbjct: 200 PIKFDTLLGHISKSKLCLVATAEATPLLNAVNSSTKETSGILIVGPEGDFTK 251
>Q6E297_ARATH (tr|Q6E297) Ribosomal RNA small subunit methyltransferase E
OS=Arabidopsis thaliana GN=AT1G50000 PE=2 SV=1
Length = 296
Score = 310 bits (793), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 151/232 (65%), Positives = 182/232 (78%), Gaps = 7/232 (3%)
Query: 15 RSWLPSLCVRAFS--SSSEYGD-----QSRGGLPRFFSETLPPSKGNVVRVQGDEFWHMT 67
RSWLP+ ++F+ SSS D QSRGGLPRFFS+ LP KG VVRVQG EFWHM
Sbjct: 21 RSWLPTSSFKSFATVSSSPPSDLNLRNQSRGGLPRFFSDDLPSRKGGVVRVQGSEFWHMA 80
Query: 68 KVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPPPNTQLHVFSGFGTL 127
KVLRL +DRV+LFNGKGGLVEGCI+++D+TG+DF+A D ++I P Q VF+ FGTL
Sbjct: 81 KVLRLKQEDRVELFNGKGGLVEGCIQSIDKTGVDFIAQEDQKVILPQGMQWQVFAAFGTL 140
Query: 128 KGGRADWLVEKCTELGASSVTPLLTERSSSISENRVDRLERVILAASKQCQRLHEMIFKP 187
KGGRADWL+EKCTELGASSVTPLLTERS ISENRVDRLERV AA+KQCQRLH+M+ P
Sbjct: 141 KGGRADWLIEKCTELGASSVTPLLTERSPIISENRVDRLERVSFAAAKQCQRLHQMVLNP 200
Query: 188 PVDIDDLSHLIAQSKLPLIATAKATPVLNALTSLEKQASGLIIIGPEGDFTE 239
P+ L I +SKL L+ATA+A P+LNA+ S K++SGL+I+GPEGDFT+
Sbjct: 201 PIKFGTLLDHILKSKLCLVATAEAKPLLNAVNSSAKESSGLLIVGPEGDFTK 252
>K4B2Q5_SOLLC (tr|K4B2Q5) Uncharacterized protein OS=Solanum lycopersicum
GN=Solyc01g106880.2 PE=4 SV=1
Length = 340
Score = 310 bits (793), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 154/233 (66%), Positives = 189/233 (81%), Gaps = 1/233 (0%)
Query: 7 PVTFRFVNRSWLPSLCVRAFSSSSEYGDQSRGGLPRFFSETLPPSKGNVVRVQGDEFWHM 66
P ++RS + +RAFSSSS +QSRGGLPRF+S+ LPPSK VVRV+GDEFWHM
Sbjct: 8 PWLVNLLSRSRQTTNSLRAFSSSSSS-NQSRGGLPRFYSDKLPPSKDGVVRVKGDEFWHM 66
Query: 67 TKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPPPNTQLHVFSGFGT 126
T+VLRL DRV+LF+GKGGLVEGCI+N+D+ G+D VAL + + + P NTQ HV++ FGT
Sbjct: 67 TRVLRLRIHDRVELFDGKGGLVEGCIQNIDQNGLDIVALENPKSVSPHNTQWHVYAAFGT 126
Query: 127 LKGGRADWLVEKCTELGASSVTPLLTERSSSISENRVDRLERVILAASKQCQRLHEMIFK 186
LKGGRADWLVEKCTELGA SVTPLLT+RS SISENRVDRL+RV LAA+KQCQRLHEM+
Sbjct: 127 LKGGRADWLVEKCTELGACSVTPLLTDRSPSISENRVDRLQRVNLAAAKQCQRLHEMVLN 186
Query: 187 PPVDIDDLSHLIAQSKLPLIATAKATPVLNALTSLEKQASGLIIIGPEGDFTE 239
PP+ I L L+ SKL IATA+A PV +AL+S++K+++GL+IIGPEGDFTE
Sbjct: 187 PPIKIGGLLPLVKNSKLSFIATAEAKPVFSALSSIKKESTGLMIIGPEGDFTE 239
>R0GLI3_9BRAS (tr|R0GLI3) Uncharacterized protein OS=Capsella rubella
GN=CARUB_v10008016mg PE=4 SV=1
Length = 294
Score = 304 bits (778), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 149/234 (63%), Positives = 179/234 (76%), Gaps = 7/234 (2%)
Query: 13 VNRSWLPSLCVRAFSSSSEYG-------DQSRGGLPRFFSETLPPSKGNVVRVQGDEFWH 65
+ R WLP R F+S S +QSRGGLPRFFS+ LP KG VRVQG EFWH
Sbjct: 17 IVRLWLPPSSFRTFASVSSPPSSDSDLRNQSRGGLPRFFSDDLPSCKGGSVRVQGSEFWH 76
Query: 66 MTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPPPNTQLHVFSGFG 125
M KVLRL +DRV+LFNGKGGLVEGCI+++D+ G+DF+A D ++I P Q VF+ FG
Sbjct: 77 MAKVLRLKPEDRVELFNGKGGLVEGCIQSIDKNGVDFIAQEDQKVILPQGMQWQVFAAFG 136
Query: 126 TLKGGRADWLVEKCTELGASSVTPLLTERSSSISENRVDRLERVILAASKQCQRLHEMIF 185
TLKGGRADWL+EKCTELGAS VTPLLTERSS ISENRVDRLERV AA+KQCQRLH+MI
Sbjct: 137 TLKGGRADWLIEKCTELGASGVTPLLTERSSIISENRVDRLERVSFAAAKQCQRLHQMIL 196
Query: 186 KPPVDIDDLSHLIAQSKLPLIATAKATPVLNALTSLEKQASGLIIIGPEGDFTE 239
PP+ D L I++SKL L+ATA+ATP+LNA+ S K+ SG++I+GPEGDFT+
Sbjct: 197 NPPIKFDTLLDHISKSKLCLVATAEATPLLNAVKSSTKETSGVLIVGPEGDFTK 250
>M5W4K3_PRUPE (tr|M5W4K3) Uncharacterized protein OS=Prunus persica
GN=PRUPE_ppa009413mg PE=4 SV=1
Length = 294
Score = 300 bits (767), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 152/249 (61%), Positives = 189/249 (75%), Gaps = 12/249 (4%)
Query: 2 LQTLVPVTFRFVNRSWL---PSLCVRAFSSSSEYGDQS--------RGGLPRFFSETLPP 50
+QTL P+ RF R W SL +R S + S RGGLPRFFSE LP
Sbjct: 1 MQTLTPIRPRFA-RLWSLNPSSLSIRTLSPRAFSSSSSSSDYSNQSRGGLPRFFSELLPT 59
Query: 51 SKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEI 110
SKG +VRVQGDEFWHMTKVLRL +DRV+LFNGKGGL++G I+++DR+G+DFVAL D +
Sbjct: 60 SKGGIVRVQGDEFWHMTKVLRLRTNDRVELFNGKGGLIQGLIQSVDRSGLDFVALEDPKS 119
Query: 111 IPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSSSISENRVDRLERVI 170
+ P +TQ HVF+ FGTLKGGRADWLVEKCTELGASS+TPLLTERS ++SENR+DRL+RV
Sbjct: 120 VLPQSTQWHVFAAFGTLKGGRADWLVEKCTELGASSLTPLLTERSPTVSENRLDRLQRVN 179
Query: 171 LAASKQCQRLHEMIFKPPVDIDDLSHLIAQSKLPLIATAKATPVLNALTSLEKQASGLII 230
+AA+KQCQRLHEMI PP I+ L L+A+SKL +A A+ TP+++ALT ++ GLI+
Sbjct: 180 VAAAKQCQRLHEMILNPPKKINGLLPLVAESKLAFLAVAEGTPLVSALTLSGTESGGLIV 239
Query: 231 IGPEGDFTE 239
+GPEGDFTE
Sbjct: 240 VGPEGDFTE 248
>M4DQN1_BRARP (tr|M4DQN1) Uncharacterized protein OS=Brassica rapa subsp.
pekinensis GN=Bra018824 PE=4 SV=1
Length = 303
Score = 297 bits (761), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 151/239 (63%), Positives = 184/239 (76%), Gaps = 14/239 (5%)
Query: 15 RSWLP------SLCVRAFSSSSEYGDQSRGGLPRFFSETLPPSK--------GNVVRVQG 60
RSWLP + + SS S+ +QSRGGLPRFFS+ LP K G +VRVQG
Sbjct: 21 RSWLPPSSSFKAFSSASSSSDSDLRNQSRGGLPRFFSDDLPSRKARLLYLSHGGMVRVQG 80
Query: 61 DEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPPPNTQLHV 120
EFWHM KVLRL +DRV+LFNGKGGLVEGCI+++D+TG+DFVA D ++I P Q V
Sbjct: 81 SEFWHMAKVLRLKAEDRVELFNGKGGLVEGCIQSIDKTGVDFVAQEDEKVILPQGIQWQV 140
Query: 121 FSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSSSISENRVDRLERVILAASKQCQRL 180
F+ FGTLKGGRADWL+EKCTELGASSVTPLLTERSS IS+NRVDRLERV AA+KQCQRL
Sbjct: 141 FAAFGTLKGGRADWLIEKCTELGASSVTPLLTERSSIISDNRVDRLERVSFAAAKQCQRL 200
Query: 181 HEMIFKPPVDIDDLSHLIAQSKLPLIATAKATPVLNALTSLEKQASGLIIIGPEGDFTE 239
H+MI PP+ + L I++SKL L+ATA+ATP+LNA+ S K++SGL+I+GPEGDFT+
Sbjct: 201 HQMIISPPIKFNTLLDHISKSKLCLVATAEATPLLNAVQSSAKESSGLLIVGPEGDFTK 259
>M0SKM7_MUSAM (tr|M0SKM7) Uncharacterized protein OS=Musa acuminata subsp.
malaccensis PE=4 SV=1
Length = 289
Score = 291 bits (745), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 140/229 (61%), Positives = 177/229 (77%), Gaps = 3/229 (1%)
Query: 10 FRFVNRSWLPSLCVRAFSSSSEYGDQSRGGLPRFFSETLPPSKGNVVRVQGDEFWHMTKV 69
R RS P L RA SS++ G+ RGGLPRF S +LP SKGN VR+QGDEFWHMTKV
Sbjct: 14 IRRSRRSASPVL--RALSSNAS-GNLCRGGLPRFHSPSLPTSKGNAVRIQGDEFWHMTKV 70
Query: 70 LRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPPPNTQLHVFSGFGTLKG 129
LRL +DRV+LF+GKGGLVEGCI+++ RTG+D +AL + +++ P Q H+++ FGTLKG
Sbjct: 71 LRLGPNDRVELFDGKGGLVEGCIQSVSRTGLDIIALQEPQVVDPQGVQWHIYAAFGTLKG 130
Query: 130 GRADWLVEKCTELGASSVTPLLTERSSSISENRVDRLERVILAASKQCQRLHEMIFKPPV 189
GRADWLVEKCTELGASSVTPLLTERS +I+ENRV+RLERV+LAA KQCQRLH+M PP+
Sbjct: 131 GRADWLVEKCTELGASSVTPLLTERSHTITENRVERLERVVLAAVKQCQRLHQMTLNPPM 190
Query: 190 DIDDLSHLIAQSKLPLIATAKATPVLNALTSLEKQASGLIIIGPEGDFT 238
L +++ SK +A A+ATP++N L+ + SGL+I+GPEGDFT
Sbjct: 191 KFRKLLPMVSNSKFAFVAVAEATPLVNVLSESTVEDSGLLIVGPEGDFT 239
>M0WQ59_HORVD (tr|M0WQ59) Uncharacterized protein OS=Hordeum vulgare var.
distichum PE=4 SV=1
Length = 296
Score = 277 bits (709), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 134/220 (60%), Positives = 168/220 (76%), Gaps = 1/220 (0%)
Query: 21 LCVRAFSSSSEYGDQSRGGLPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQL 80
L A + S+ ++RGGLPRF S +LP SKG VVR+QGDEFWHMT+VLRL +DRV+L
Sbjct: 25 LVAAARAHSTAGTSRARGGLPRFHSPSLPSSKGEVVRIQGDEFWHMTRVLRLGINDRVEL 84
Query: 81 FNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCT 140
F+G GGLVEG I+ +D+ G D L + +I P Q HVF+ FGTLKGGRADWL+EKCT
Sbjct: 85 FDGAGGLVEGSIQKVDKNGSDVELLENARLIAPQGIQWHVFAAFGTLKGGRADWLIEKCT 144
Query: 141 ELGASSVTPLLTERSSSISENRVDRLERVILAASKQCQRLHEMIFKPPVDIDDLSHLIAQ 200
ELGASSVTPLLTER +I+ENRVDRL+R++LAA KQCQR+H+M KPP+ I DL ++Q
Sbjct: 145 ELGASSVTPLLTERCHTIAENRVDRLQRLVLAAVKQCQRVHDMSLKPPIQIHDLPLAVSQ 204
Query: 201 SKLPLIATAKATPVLNALTSL-EKQASGLIIIGPEGDFTE 239
SKL +A+A+A PVL+ L ++ SGL+IIGPEGDFTE
Sbjct: 205 SKLAFLASAEAPPVLSVLPKCGSEEESGLLIIGPEGDFTE 244
>F2DCL5_HORVD (tr|F2DCL5) Predicted protein (Fragment) OS=Hordeum vulgare var.
distichum PE=2 SV=1
Length = 347
Score = 276 bits (706), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 134/220 (60%), Positives = 168/220 (76%), Gaps = 1/220 (0%)
Query: 21 LCVRAFSSSSEYGDQSRGGLPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQL 80
L A + S+ ++RGGLPRF S +LP SKG VVR+QGDEFWHMT+VLRL +DRV+L
Sbjct: 76 LVAAARAHSTAGTSRARGGLPRFHSPSLPSSKGEVVRIQGDEFWHMTRVLRLGINDRVEL 135
Query: 81 FNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCT 140
F+G GGLVEG I+ +D+ G D L + +I P Q HVF+ FGTLKGGRADWL+EKCT
Sbjct: 136 FDGAGGLVEGSIQKVDKNGSDVELLENARLIAPQGIQWHVFAAFGTLKGGRADWLIEKCT 195
Query: 141 ELGASSVTPLLTERSSSISENRVDRLERVILAASKQCQRLHEMIFKPPVDIDDLSHLIAQ 200
ELGASSVTPLLTER +I+ENRVDRL+R++LAA KQCQR+H+M KPP+ I DL ++Q
Sbjct: 196 ELGASSVTPLLTERCHTIAENRVDRLQRLVLAAVKQCQRVHDMSLKPPIQIHDLPLAVSQ 255
Query: 201 SKLPLIATAKATPVLNALTSL-EKQASGLIIIGPEGDFTE 239
SKL +A+A+A PVL+ L ++ SGL+IIGPEGDFTE
Sbjct: 256 SKLAFLASAEAPPVLSVLPKCGSEEESGLLIIGPEGDFTE 295
>C5WLZ9_SORBI (tr|C5WLZ9) Putative uncharacterized protein Sb01g009310 OS=Sorghum
bicolor GN=Sb01g009310 PE=4 SV=1
Length = 287
Score = 275 bits (704), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 132/226 (58%), Positives = 168/226 (74%), Gaps = 3/226 (1%)
Query: 14 NRSWLPSLCVRAFSSSSEYGDQSRGGLPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLS 73
R L + RA S ++ ++RGGLPRF + +LP SKG V+R+QGDEFWHMT+VLRL
Sbjct: 22 TRQLLLAAPARAHSGAA---SRARGGLPRFHAPSLPSSKGEVIRIQGDEFWHMTRVLRLG 78
Query: 74 NDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRAD 133
+DRV+LF+G GGL EG I +D+ G D L D I+ P Q HVF+ FGTLKGGRAD
Sbjct: 79 INDRVELFDGAGGLAEGFIHKVDKGGSDVELLEDARIVAPQGIQWHVFAAFGTLKGGRAD 138
Query: 134 WLVEKCTELGASSVTPLLTERSSSISENRVDRLERVILAASKQCQRLHEMIFKPPVDIDD 193
WL+EKCTELGASSVTPLLTER +I+ENRVDRL+R++LAA KQCQR+HEM KPP+ I
Sbjct: 139 WLIEKCTELGASSVTPLLTERCHTIAENRVDRLQRLVLAAVKQCQRIHEMSLKPPIQISH 198
Query: 194 LSHLIAQSKLPLIATAKATPVLNALTSLEKQASGLIIIGPEGDFTE 239
L +++QSKL +A+A+A P+L+ L + SGL+I+GPEGDFTE
Sbjct: 199 LLPVVSQSKLAFLASAEAPPLLSVLPKSSTEQSGLLIVGPEGDFTE 244
>Q0DNW7_ORYSJ (tr|Q0DNW7) Os03g0729700 protein (Fragment) OS=Oryza sativa subsp.
japonica GN=Os03g0729700 PE=4 SV=1
Length = 330
Score = 275 bits (702), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 129/211 (61%), Positives = 163/211 (77%)
Query: 29 SSEYGDQSRGGLPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLV 88
S+ G ++RGGLPRF S TLP SKG VR+QGDEFWHMT+VLRL +DRV+LF+G GGLV
Sbjct: 71 STAGGSRARGGLPRFHSPTLPSSKGEEVRIQGDEFWHMTRVLRLGINDRVELFDGAGGLV 130
Query: 89 EGCIRNMDRTGIDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVT 148
EG I+ +D+ G D L D +I P Q HV++ FGTLKGGRADWLVEKCTELGA SVT
Sbjct: 131 EGSIQKVDKGGSDVKLLEDARLIAPDGIQWHVYAAFGTLKGGRADWLVEKCTELGACSVT 190
Query: 149 PLLTERSSSISENRVDRLERVILAASKQCQRLHEMIFKPPVDIDDLSHLIAQSKLPLIAT 208
PLLTER +I+ENRVDRL+R++LAA KQCQR+H M+ PP+ I DL +++QSKL +A+
Sbjct: 191 PLLTERCHTIAENRVDRLQRLVLAAVKQCQRIHGMLLNPPIQIADLQPVVSQSKLAFVAS 250
Query: 209 AKATPVLNALTSLEKQASGLIIIGPEGDFTE 239
A++ P+L+ L + SGL+I+GPEGDFTE
Sbjct: 251 AESPPLLSTLPKSCNEESGLLIVGPEGDFTE 281
>K4AD97_SETIT (tr|K4AD97) Uncharacterized protein OS=Setaria italica
GN=Si036854m.g PE=4 SV=1
Length = 294
Score = 273 bits (699), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 128/212 (60%), Positives = 164/212 (77%)
Query: 28 SSSEYGDQSRGGLPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGL 87
SS+ ++RGGLPRF + +LP SKG V+R+QGDEFWHMT+VLRL +DRV+LF+G GGL
Sbjct: 34 SSAAGASRARGGLPRFHTPSLPSSKGEVIRIQGDEFWHMTRVLRLGVNDRVELFDGVGGL 93
Query: 88 VEGCIRNMDRTGIDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSV 147
VEG I+ +D+ G D L D +I P Q HVF+ FGTLKGGRADWL+EKCTELGA SV
Sbjct: 94 VEGSIQKVDKGGSDVELLEDARLIAPQGIQWHVFAAFGTLKGGRADWLIEKCTELGACSV 153
Query: 148 TPLLTERSSSISENRVDRLERVILAASKQCQRLHEMIFKPPVDIDDLSHLIAQSKLPLIA 207
TPLLTER +I+ENRVDRL+R++L+A KQCQR+HEM KPP+ I +L +++QSKL +A
Sbjct: 154 TPLLTERCHTIAENRVDRLQRLVLSAVKQCQRIHEMSLKPPIQIGNLLPVVSQSKLAFLA 213
Query: 208 TAKATPVLNALTSLEKQASGLIIIGPEGDFTE 239
+A+A P+L L + SG++IIGPEGDFTE
Sbjct: 214 SAEAPPLLRVLPKSSNEQSGILIIGPEGDFTE 245
>I1GNQ2_BRADI (tr|I1GNQ2) Uncharacterized protein OS=Brachypodium distachyon
GN=BRADI1G09870 PE=4 SV=1
Length = 294
Score = 268 bits (684), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 126/205 (61%), Positives = 159/205 (77%)
Query: 35 QSRGGLPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRN 94
++RGGLPRF S +LP SKG VVR+QGDEFWHMT+VLRL +DRV+LF+G G LVEG I+
Sbjct: 41 RARGGLPRFHSPSLPSSKGEVVRIQGDEFWHMTRVLRLGVNDRVELFDGAGALVEGSIQK 100
Query: 95 MDRTGIDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTER 154
+D+ G D L + I P Q HVF+ FGTLKGGRADWL+EKCTELGA SVTPLLTER
Sbjct: 101 VDKNGSDVELLENARSIAPQGIQWHVFAAFGTLKGGRADWLIEKCTELGACSVTPLLTER 160
Query: 155 SSSISENRVDRLERVILAASKQCQRLHEMIFKPPVDIDDLSHLIAQSKLPLIATAKATPV 214
+I+ENRVDRL+R++LAA KQCQR+H+M K P++I DL +++QSKL +A+A A PV
Sbjct: 161 CHTIAENRVDRLQRLVLAAVKQCQRVHDMSLKAPIEIRDLPAIVSQSKLAFLASAGAPPV 220
Query: 215 LNALTSLEKQASGLIIIGPEGDFTE 239
L+ L + SG++IIGPEGDFT+
Sbjct: 221 LSVLPKPSNEESGVLIIGPEGDFTD 245
>A9NTD9_PICSI (tr|A9NTD9) Putative uncharacterized protein OS=Picea sitchensis
PE=2 SV=1
Length = 301
Score = 259 bits (661), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 120/206 (58%), Positives = 156/206 (75%)
Query: 34 DQSRGGLPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIR 93
++ RGGLPRF+SE LP K +VR++GDEFWHMTK LRL DRV+LFN +GGLVEG +
Sbjct: 51 NKPRGGLPRFYSEVLPAGKDKIVRIEGDEFWHMTKALRLGVQDRVELFNARGGLVEGVVL 110
Query: 94 NMDRTGIDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTE 153
++R+ D VAL + ++ P Q HVF+ FGTLKGGRADWL+EKCTELGASSVTPLLTE
Sbjct: 111 RVERSSADIVALEEPLLLTPTGVQWHVFAAFGTLKGGRADWLIEKCTELGASSVTPLLTE 170
Query: 154 RSSSISENRVDRLERVILAASKQCQRLHEMIFKPPVDIDDLSHLIAQSKLPLIATAKATP 213
RS+ IS NRV+R +RV+LAA KQCQRLH+M+ K P I+ + I S + +A A+ATP
Sbjct: 171 RSTLISGNRVERWQRVMLAAIKQCQRLHQMVVKTPTGIESILPRIETSSVSFLAMAEATP 230
Query: 214 VLNALTSLEKQASGLIIIGPEGDFTE 239
++ L ++K+ GL+I+GPEGDFT+
Sbjct: 231 IVEVLPKVDKKDGGLLIVGPEGDFTD 256
>Q6E295_ARATH (tr|Q6E295) Methyltransferases OS=Arabidopsis thaliana GN=AT1G50000
PE=2 SV=1
Length = 210
Score = 258 bits (659), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 125/187 (66%), Positives = 146/187 (78%), Gaps = 7/187 (3%)
Query: 15 RSWLPSLCVRAFS--SSSEYGD-----QSRGGLPRFFSETLPPSKGNVVRVQGDEFWHMT 67
RSWLP+ ++F+ SSS D QSRGGLPRFFS+ LP KG VVRVQG EFWHM
Sbjct: 21 RSWLPTSSFKSFATVSSSPPSDLNLRNQSRGGLPRFFSDDLPSRKGGVVRVQGSEFWHMA 80
Query: 68 KVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPPPNTQLHVFSGFGTL 127
KVLRL +DRV+LFNGKGGLVEGCI+++D+TG+DF+A D ++I P Q VF+ FGTL
Sbjct: 81 KVLRLKQEDRVELFNGKGGLVEGCIQSIDKTGVDFIAQEDQKVILPQGMQWQVFAAFGTL 140
Query: 128 KGGRADWLVEKCTELGASSVTPLLTERSSSISENRVDRLERVILAASKQCQRLHEMIFKP 187
KGGRADWL+EKCTELGASSVTPLLTERS ISENRVDRLERV AA+KQCQRLH+M+ P
Sbjct: 141 KGGRADWLIEKCTELGASSVTPLLTERSPIISENRVDRLERVSFAAAKQCQRLHQMVLNP 200
Query: 188 PVDIDDL 194
P+ L
Sbjct: 201 PIKFGTL 207
>M8C2M4_AEGTA (tr|M8C2M4) Ribosomal RNA small subunit methyltransferase E
OS=Aegilops tauschii GN=F775_04831 PE=4 SV=1
Length = 255
Score = 251 bits (641), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 119/190 (62%), Positives = 150/190 (78%), Gaps = 1/190 (0%)
Query: 51 SKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEI 110
+ G VVR+QGDEFWHMT+VLRL +DRV+LF+G GGLVEG I+ +D+ G D L + +
Sbjct: 15 AAGEVVRIQGDEFWHMTRVLRLGVNDRVELFDGAGGLVEGSIQKVDKNGSDVELLENARL 74
Query: 111 IPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSSSISENRVDRLERVI 170
I P Q HVF+ FGTLKGGRADWL+EKCTELGASSVTPLLTER +I+ENRVDRL+R++
Sbjct: 75 IAPQGIQWHVFAAFGTLKGGRADWLIEKCTELGASSVTPLLTERCHTIAENRVDRLQRLV 134
Query: 171 LAASKQCQRLHEMIFKPPVDIDDLSHLIAQSKLPLIATAKATPVLNALTSL-EKQASGLI 229
LAA KQCQR+H+M KPP++I DL ++QSKL +A+A+A PVL+ L ++ SGL+
Sbjct: 135 LAAVKQCQRVHDMSLKPPLEIHDLPLAVSQSKLAFLASAEAPPVLSVLPKCSSEEESGLL 194
Query: 230 IIGPEGDFTE 239
IIGPEGDFTE
Sbjct: 195 IIGPEGDFTE 204
>M7YKL5_TRIUA (tr|M7YKL5) Ribosomal RNA small subunit methyltransferase E
OS=Triticum urartu GN=TRIUR3_07897 PE=4 SV=1
Length = 439
Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 119/188 (63%), Positives = 148/188 (78%), Gaps = 1/188 (0%)
Query: 53 GNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIP 112
G VVR+QGDEFWHMT+VLRL +DRV+LF+G GGLVEG I+ +D+ G D L + +I
Sbjct: 201 GEVVRIQGDEFWHMTRVLRLGINDRVELFDGAGGLVEGSIQKVDKNGSDVELLENARLIA 260
Query: 113 PPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSSSISENRVDRLERVILA 172
P Q HVF+ FGTLKGGRADWL+EKCTELGASSVTPLLTER +I+ENRVDRL+R++LA
Sbjct: 261 PQGIQWHVFAAFGTLKGGRADWLIEKCTELGASSVTPLLTERCHTIAENRVDRLQRLVLA 320
Query: 173 ASKQCQRLHEMIFKPPVDIDDLSHLIAQSKLPLIATAKATPVLNALTSL-EKQASGLIII 231
A KQCQR+H+M KPP+ I DL ++QSKL +A+A+A PVL+ L ++ SGL+II
Sbjct: 321 AVKQCQRVHDMSLKPPIQIHDLPLAVSQSKLAFLASAEAPPVLSVLPKCSSEEESGLLII 380
Query: 232 GPEGDFTE 239
GPEGDFTE
Sbjct: 381 GPEGDFTE 388
>I1PF37_ORYGL (tr|I1PF37) Uncharacterized protein (Fragment) OS=Oryza glaberrima
PE=4 SV=1
Length = 330
Score = 249 bits (637), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 116/193 (60%), Positives = 149/193 (77%)
Query: 47 TLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALT 106
+L P +G VR+QGDEFWHMT+VLRL +DRV+LF+G GGLVEG I+ +D+ G D L
Sbjct: 89 SLRPRQGEEVRIQGDEFWHMTRVLRLGINDRVELFDGAGGLVEGSIQKVDKGGSDVKLLE 148
Query: 107 DMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSSSISENRVDRL 166
D +I P Q HV++ FGTLKGGRADWLVEKCTELGA SVTPLLTER +++ENRVDRL
Sbjct: 149 DARLIAPDGIQWHVYAAFGTLKGGRADWLVEKCTELGACSVTPLLTERCHTVAENRVDRL 208
Query: 167 ERVILAASKQCQRLHEMIFKPPVDIDDLSHLIAQSKLPLIATAKATPVLNALTSLEKQAS 226
+R++LAA KQCQR+H M+ PP+ I DL +I+QSKL +A+A++ P+L+ L + S
Sbjct: 209 QRLVLAAVKQCQRIHGMLLNPPIQIADLQPVISQSKLAFVASAESPPLLSTLPKSCNEES 268
Query: 227 GLIIIGPEGDFTE 239
GL+I+GPEGDFTE
Sbjct: 269 GLLIVGPEGDFTE 281
>B9GIC4_POPTR (tr|B9GIC4) Predicted protein OS=Populus trichocarpa
GN=POPTRDRAFT_1069760 PE=4 SV=1
Length = 212
Score = 245 bits (626), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 120/174 (68%), Positives = 142/174 (81%), Gaps = 3/174 (1%)
Query: 66 MTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPPPNTQLHVFSGFG 125
MTKVLRL +DRV+LFNGKGGL+EGCI +DRTG+DFVAL D +++PP +T+ HV++ FG
Sbjct: 1 MTKVLRLGTNDRVELFNGKGGLIEGCIERIDRTGLDFVALEDPKLVPPLSTKWHVYAAFG 60
Query: 126 TLKGGRADWLVEKCTELGASSVTPLLTERSSSISENRVDRLERVILAASKQCQRLHEMIF 185
TLKG RADWL+EKCTELGA SVTPLLTERS SISENRVDR RVILAA+KQ QRLHEMI
Sbjct: 61 TLKGDRADWLLEKCTELGAHSVTPLLTERSPSISENRVDRFRRVILAATKQSQRLHEMIL 120
Query: 186 KPPVDIDDLSHLIAQSKLPLIATAKATPVLNALTSLEKQASGLIIIGPEGDFTE 239
PP I L+ SKL +ATA ATPV++ LTS K++SGL+I+GPEGDFTE
Sbjct: 121 NPPTKI---VGLLPLSKLSFLATAGATPVVSVLTSSRKESSGLMIVGPEGDFTE 171
>D8QWL8_SELML (tr|D8QWL8) Putative uncharacterized protein OS=Selaginella
moellendorffii GN=SELMODRAFT_80724 PE=4 SV=1
Length = 258
Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 101/205 (49%), Positives = 137/205 (66%), Gaps = 4/205 (1%)
Query: 39 GLPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRT 98
LPRF+ ++LP SKG V + G EFWHMTK LRL D RV+LFNG+GG+V + + R+
Sbjct: 4 ALPRFYCDSLPTSKGTAVEIDGQEFWHMTKALRLGQDQRVELFNGRGGIVTAAVSAVRRS 63
Query: 99 GIDFVALTDMEIIPPP--NTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSS 156
++ VA+ D+ +PPP + H+ + F LKGGRADW+VEKCTELGA ++TPL TERS+
Sbjct: 64 NVELVAVEDLCTLPPPVDSENWHLVAAFADLKGGRADWMVEKCTELGARTLTPLATERST 123
Query: 157 SISENRVDRLERVILAASKQCQRLHEMIFKPPVDIDDL-SHLIAQSKLPLIATAKATPVL 215
+ NR R +RV+LAA+KQCQRLH M + ++I L S + S + L+ATA AT ++
Sbjct: 124 GVCSNRSTRWKRVVLAATKQCQRLHSMELRESLNISSLKSQVSGSSHVSLLATAGATEIV 183
Query: 216 NALTSLEKQA-SGLIIIGPEGDFTE 239
K G +I+GPEGDFTE
Sbjct: 184 EVFNDSSKDIRGGTLIVGPEGDFTE 208
>A5BL94_VITVI (tr|A5BL94) Putative uncharacterized protein OS=Vitis vinifera
GN=VITISV_034944 PE=4 SV=1
Length = 259
Score = 214 bits (544), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 112/174 (64%), Positives = 135/174 (77%), Gaps = 12/174 (6%)
Query: 78 VQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPPPNTQLHVFSGFG------------ 125
V+LFNGKGGLVEG I +DRTG+DF+AL D +++ P +++ HVF+ F
Sbjct: 40 VELFNGKGGLVEGSINRIDRTGLDFIALEDPKLVLPQSSRWHVFAAFDFAITCLQLLLLG 99
Query: 126 TLKGGRADWLVEKCTELGASSVTPLLTERSSSISENRVDRLERVILAASKQCQRLHEMIF 185
TLKGGRADWLVEKCTELG SSVTPLLTERS SISENRVDRL+RVILAA+KQCQRLHEM
Sbjct: 100 TLKGGRADWLVEKCTELGTSSVTPLLTERSPSISENRVDRLQRVILAAAKQCQRLHEMTL 159
Query: 186 KPPVDIDDLSHLIAQSKLPLIATAKATPVLNALTSLEKQASGLIIIGPEGDFTE 239
PP ID L ++ QSKL L+A A+ATPV + LTS ++++GL+IIGPEGDFTE
Sbjct: 160 NPPTTIDSLLPIVTQSKLSLVAVAEATPVFSVLTSSRRESTGLMIIGPEGDFTE 213
>A9RSI2_PHYPA (tr|A9RSI2) Predicted protein OS=Physcomitrella patens subsp.
patens GN=PHYPADRAFT_205197 PE=4 SV=1
Length = 353
Score = 213 bits (542), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 109/209 (52%), Positives = 139/209 (66%), Gaps = 7/209 (3%)
Query: 34 DQSRGGLPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIR 93
DQSRGGLPRF +LP KG VRV GDEFWHMT+VLRL+ +DR++LF+G GGLVEG +
Sbjct: 99 DQSRGGLPRFHISSLPAVKGMTVRVDGDEFWHMTRVLRLNVNDRIELFDGNGGLVEGTLL 158
Query: 94 NMDRTGIDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTE 153
+ + + VA T ++P HV + FG LKGGRADWLVEKCTELGA ++TPLLT+
Sbjct: 159 KVTKNCAEVVATTARRVLPLTGPNWHVAAAFGNLKGGRADWLVEKCTELGAQTLTPLLTQ 218
Query: 154 RSSSISENRVDRLERVILAASKQCQRLHEMIFKPPVDIDDLSHLIAQSKLPLIATAKATP 213
RS+S++E R DR R+ +AA+KQCQRLH + + P L HL+A+ K +A A
Sbjct: 219 RSASVAEQRNDRWNRISMAATKQCQRLHALDVREPT---QLKHLLAEVKKADVAFLAAAG 275
Query: 214 VLNALTSL----EKQASGLIIIGPEGDFT 238
SL E GL++IGPEGDFT
Sbjct: 276 APPLAQSLLQRPECLRGGLLLIGPEGDFT 304
>I1LED0_SOYBN (tr|I1LED0) Uncharacterized protein OS=Glycine max PE=4 SV=1
Length = 248
Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 112/172 (65%), Positives = 130/172 (75%), Gaps = 15/172 (8%)
Query: 11 RFVNRSWLPSLCVRA--FSSSSEYGDQSRGGLPRFFSET------LPPSKGNVVRVQGDE 62
RFVNRSWL +L VRA SSSS++GDQ+R + FS + G+V+RVQ DE
Sbjct: 13 RFVNRSWLRNLTVRAMALSSSSDHGDQTRVSIWNQFSVNNALFVIILVVLGSVIRVQCDE 72
Query: 63 FWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPPPNTQLHVFS 122
FWHMTKVLR VQLFNGKG LVEGCI+N+DRTG+DFVAL D+ IPPPNTQLHVF+
Sbjct: 73 FWHMTKVLR------VQLFNGKGSLVEGCIQNIDRTGLDFVALNDLISIPPPNTQLHVFA 126
Query: 123 GFGTLKGGRADWLVEKCTELGASSVTPLLTERSSSISENRVDRLERVILAAS 174
GFGTLKGGRADWL+EKCTELGA+SVTPLLTERS SIS + D L + L+ S
Sbjct: 127 GFGTLKGGRADWLLEKCTELGANSVTPLLTERSPSIS-CKWDYLIQGCLSCS 177
>D8RUF1_SELML (tr|D8RUF1) Putative uncharacterized protein OS=Selaginella
moellendorffii GN=SELMODRAFT_232410 PE=4 SV=1
Length = 255
Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 97/204 (47%), Positives = 134/204 (65%), Gaps = 5/204 (2%)
Query: 39 GLPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRT 98
LPRF+ ++LP SKG V + G EFWHMTKVLRL D RV+LFNG+GG+V + + R+
Sbjct: 4 ALPRFYCDSLPTSKGTAVEIDGQEFWHMTKVLRLGQDQRVELFNGRGGIVTAAVSAVRRS 63
Query: 99 GIDFVALTDMEIIPPP--NTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSS 156
++ VA+ D+ +PPP + H+ + F LKGGRADW+VEKCTELGA ++TPL TERS+
Sbjct: 64 NVELVAVEDLCTLPPPVDSENWHLVAAFADLKGGRADWMVEKCTELGARTLTPLATERST 123
Query: 157 SISENRVDRLERVILAASKQCQRLHEMIFKPPVDIDDLSHLIAQSKLPLIATAKATPVLN 216
+ NR R +RV+LAA+KQCQRLH M + ++I L + ++ TA AT ++
Sbjct: 124 GVCSNRSTRWKRVVLAATKQCQRLHSMELRQSLNISSLKSQVLKNNED--TTAGATEIVE 181
Query: 217 ALTSLEKQA-SGLIIIGPEGDFTE 239
K G +I+GPEGDFT+
Sbjct: 182 VFNDSSKDIRGGTLIVGPEGDFTD 205
>Q6E296_ARATH (tr|Q6E296) Putative uncharacterized protein OS=Arabidopsis
thaliana GN=At1g50000 PE=2 SV=1
Length = 168
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 85/123 (69%), Positives = 101/123 (82%)
Query: 117 QLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSSSISENRVDRLERVILAASKQ 176
Q VF+ FGTLKGGRADWL+EKCTELGASSVTPLLTERS ISENRVDRLERV AA+KQ
Sbjct: 2 QWQVFAAFGTLKGGRADWLIEKCTELGASSVTPLLTERSPIISENRVDRLERVSFAAAKQ 61
Query: 177 CQRLHEMIFKPPVDIDDLSHLIAQSKLPLIATAKATPVLNALTSLEKQASGLIIIGPEGD 236
CQRLH+M+ PP+ L I +SKL L+ATA+A P+LNA+ S K++SGL+I+GPEGD
Sbjct: 62 CQRLHQMVLNPPIKFGTLLDHILKSKLCLVATAEAKPLLNAVNSSAKESSGLLIVGPEGD 121
Query: 237 FTE 239
FT+
Sbjct: 122 FTK 124
>B9FBC3_ORYSJ (tr|B9FBC3) Putative uncharacterized protein OS=Oryza sativa subsp.
japonica GN=OsJ_12443 PE=4 SV=1
Length = 501
Score = 176 bits (445), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 131/221 (59%), Gaps = 33/221 (14%)
Query: 52 KGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEII 111
+G VR+QGDEFWHMT+VLRL +DRV+LF+G GGLVEG I+ +D+ G D L D +I
Sbjct: 232 RGEEVRIQGDEFWHMTRVLRLGINDRVELFDGAGGLVEGSIQKVDKGGSDVKLLEDARLI 291
Query: 112 PPPNTQLHVFSGFGTL----KGGRADWLVEKC-------------TELGASSVTPLLTER 154
P Q HV++ FG++ KGG L+E G S LT
Sbjct: 292 APDGIQWHVYAAFGSIQKVDKGGSDVKLLEDARLIAPDGIQWHVYAAFGESHKLCALTVN 351
Query: 155 SSS----------------ISENRVDRLERVILAASKQCQRLHEMIFKPPVDIDDLSHLI 198
+ S I+ENRVDRL+R++LAA KQCQR+H M+ PP+ I DL ++
Sbjct: 352 TGSLELVVLHLFLQSDAHTIAENRVDRLQRLVLAAVKQCQRIHGMLLNPPIQIADLQPVV 411
Query: 199 AQSKLPLIATAKATPVLNALTSLEKQASGLIIIGPEGDFTE 239
+QSKL +A+A++ P+L+ L + SGL+I+GPEGDFTE
Sbjct: 412 SQSKLAFVASAESPPLLSTLPKSCNEESGLLIVGPEGDFTE 452
>D7MMJ2_ARALL (tr|D7MMJ2) Putative uncharacterized protein OS=Arabidopsis lyrata
subsp. lyrata GN=ARALYDRAFT_356649 PE=4 SV=1
Length = 139
Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 75/110 (68%), Positives = 90/110 (81%)
Query: 126 TLKGGRADWLVEKCTELGASSVTPLLTERSSSISENRVDRLERVILAASKQCQRLHEMIF 185
TLKGGRADWL+EKCTELGASSVTPLLTERSS ISENRVDRLERV A + QCQRLH+++
Sbjct: 6 TLKGGRADWLIEKCTELGASSVTPLLTERSSIISENRVDRLERVSFAVATQCQRLHQIVL 65
Query: 186 KPPVDIDDLSHLIAQSKLPLIATAKATPVLNALTSLEKQASGLIIIGPEG 235
PP+ L I +SKL L+ATA+ATP+LNA+ S K++SGL+I+G EG
Sbjct: 66 NPPIKFVTLLDHIFKSKLCLVATAEATPLLNAVNSSAKESSGLLIVGSEG 115
>A4SBF0_OSTLU (tr|A4SBF0) Predicted protein (Fragment) OS=Ostreococcus
lucimarinus (strain CCE9901) GN=OSTLU_6230 PE=4 SV=1
Length = 246
Score = 120 bits (300), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 81/213 (38%), Positives = 111/213 (52%), Gaps = 14/213 (6%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
L RF+ + ++G V + +E H TK LRL DR+++ +G+G L + +D G
Sbjct: 1 LHRFYVDA-DFARGAAVTLSREETRHATKALRLKPGDRLEVCDGRGTLGIARLCAVDGVG 59
Query: 100 IDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSSSIS 159
+ T V S FG LKGGR DWLVEKC ELGA ++ PLLT RS +I
Sbjct: 60 ATVEVEEMVADALGSGTAWDVASAFGGLKGGRGDWLVEKCAELGARTLVPLLTTRSGAIG 119
Query: 160 ---------ENRVDRLERVILAASKQCQRLHEMIFKPPVDIDDLSHLIAQ---SKLPLIA 207
R R RV AASKQ R++ + PP+ ++ L IA+ +L L+A
Sbjct: 120 GGDRDGDKKRGREGRWGRVAHAASKQSLRVYGLQVAPPIGVEALCEEIAKDCGERLTLLA 179
Query: 208 TAKATPVLN-ALTSLEKQASGLIIIGPEGDFTE 239
A A P+ + A S SG I+IGPEGDFT+
Sbjct: 180 AAGAPPIADVARASGLDLRSGRIVIGPEGDFTD 212
>E1Z9B1_CHLVA (tr|E1Z9B1) Putative uncharacterized protein OS=Chlorella
variabilis GN=CHLNCDRAFT_143017 PE=4 SV=1
Length = 158
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 69/120 (57%), Gaps = 2/120 (1%)
Query: 41 PRFF--SETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRT 98
PRF+ + + G V+R+ +E H K LRL DR++L +G G + + +DR
Sbjct: 10 PRFYIPARLADAAPGAVLRLPAEESRHAAKTLRLRQGDRIELCDGSGFVALAEMGGVDRA 69
Query: 99 GIDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSSSI 158
G L +++P Q V G+LKGGR+DWLVEKC ELGA++ TPLLT RS +I
Sbjct: 70 GAVAQVLDAAQLVPAVGWQWRVACACGSLKGGRSDWLVEKCAELGAAAFTPLLTHRSPTI 129
>C1FIT6_MICSR (tr|C1FIT6) Predicted protein OS=Micromonas sp. (strain RCC299 /
NOUM17) GN=MICPUN_87162 PE=4 SV=1
Length = 207
Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 56/139 (40%), Positives = 79/139 (56%), Gaps = 11/139 (7%)
Query: 111 IPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSSSISENRVDRLERVI 170
+P + V G+LKGGRADWLVEKC+ELGASS+ PLLTERS S+ + R ERV
Sbjct: 22 VPFAGPKWDVAVACGSLKGGRADWLVEKCSELGASSLVPLLTERSGSVGGSSEGRWERVA 81
Query: 171 LAASKQCQRLHEMIFKPPVDIDDLSHLIAQSKLPLIATAKATPVLNALTSLE-------- 222
AA KQ R H ++ P + L ++ ++ + L+ A A P+ ++ E
Sbjct: 82 AAAMKQSLRNHRLVVHPALTTTQLCEMVRRAPVALLCAAGAPPLREVMSMAESRTGDGVE 141
Query: 223 ---KQASGLIIIGPEGDFT 238
+ G++I+GPEGDFT
Sbjct: 142 AGYSEGGGVLIVGPEGDFT 160
>A5WA19_PSEP1 (tr|A5WA19) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas putida (strain F1 / ATCC 700007)
GN=Pput_4859 PE=3 SV=1
Length = 239
Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 62/181 (34%), Positives = 96/181 (53%), Gaps = 14/181 (7%)
Query: 65 HMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPPPNTQLHVFSGF 124
++ +VLR++ D VQLF+G G G + + + + V+L D ++ LHV G
Sbjct: 26 YIGRVLRMAPGDAVQLFDGSGQEYRGQLLEVGKKTVR-VSL-DQAFAGQADSPLHVHLGQ 83
Query: 125 GTLKGGRADWLVEKCTELGASSVTPLLTER-----SSSISENRVDRLERVILAASKQCQR 179
G +G R DW ++K TELGA+ +TP+++ER ++ R+ +V ++A +QC R
Sbjct: 84 GLSRGERMDWAIQKATELGANEITPIVSERCEVRLKDERADKRLAHWRQVAISACEQCGR 143
Query: 180 LHEMIFKPPVDIDD-LSHLIAQSKLPLIATAKATPVLNALTSLEKQASGLIIIGPEGDFT 238
+ PPV + + LS A KL L PV LTS EK A+ +IGPEG +
Sbjct: 144 STLPVIHPPVPLAEWLSSTKADLKLVL------HPVAEPLTSHEKPATLAFVIGPEGGLS 197
Query: 239 E 239
E
Sbjct: 198 E 198
>I3UU01_PSEPU (tr|I3UU01) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas putida ND6 GN=YSA_04073 PE=3 SV=1
Length = 239
Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 62/181 (34%), Positives = 96/181 (53%), Gaps = 14/181 (7%)
Query: 65 HMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPPPNTQLHVFSGF 124
++ +VLR++ D VQLF+G G G + + + + V+L D ++ LHV G
Sbjct: 26 YIGRVLRMAPGDAVQLFDGSGQEYRGQLLEVGKKTVR-VSL-DQAFAGQADSPLHVHLGQ 83
Query: 125 GTLKGGRADWLVEKCTELGASSVTPLLTER-----SSSISENRVDRLERVILAASKQCQR 179
G +G R DW ++K TELGA+ +TP+++ER ++ R+ +V ++A +QC R
Sbjct: 84 GLSRGERMDWAIQKATELGANEITPIVSERCEVRLKDERADKRLAHWRQVAISACEQCGR 143
Query: 180 LHEMIFKPPVDIDD-LSHLIAQSKLPLIATAKATPVLNALTSLEKQASGLIIIGPEGDFT 238
+ PPV + + LS A KL L PV LTS EK A+ +IGPEG +
Sbjct: 144 STLPVIHPPVPLAEWLSSTKADLKLVL------HPVAEPLTSHEKPATLAFVIGPEGGLS 197
Query: 239 E 239
E
Sbjct: 198 E 198
>M7R4H1_PSEPU (tr|M7R4H1) 16S ribosomal RNA methyltransferase RsmE OS=Pseudomonas
putida LS46 GN=PPUTLS46_005711 PE=4 SV=1
Length = 239
Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 62/181 (34%), Positives = 96/181 (53%), Gaps = 14/181 (7%)
Query: 65 HMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPPPNTQLHVFSGF 124
++ +VLR++ D VQLF+G G G + + + + V+L D ++ LHV G
Sbjct: 26 YIGRVLRMAPGDAVQLFDGSGQEFRGQLLEVGKKTVR-VSL-DQAFAGQADSPLHVHLGQ 83
Query: 125 GTLKGGRADWLVEKCTELGASSVTPLLTER-----SSSISENRVDRLERVILAASKQCQR 179
G +G R DW ++K TELGA+ +TP+++ER ++ R+ +V ++A +QC R
Sbjct: 84 GLSRGERMDWAIQKATELGANEITPIVSERCEVRLKDERADKRLAHWRQVAISACEQCGR 143
Query: 180 LHEMIFKPPVDIDD-LSHLIAQSKLPLIATAKATPVLNALTSLEKQASGLIIIGPEGDFT 238
+ PPV + + LS A KL L PV LTS EK A+ +IGPEG +
Sbjct: 144 STLPVIHPPVPLAEWLSSTKADLKLVL------HPVAEPLTSHEKPATLAFVIGPEGGLS 197
Query: 239 E 239
E
Sbjct: 198 E 198
>D6Z0J8_DESAT (tr|D6Z0J8) Ribosomal RNA small subunit methyltransferase E
OS=Desulfurivibrio alkaliphilus (strain DSM 19089 /
UNIQEM U267 / AHT2) GN=DaAHT2_0521 PE=3 SV=1
Length = 242
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 98/191 (51%), Gaps = 7/191 (3%)
Query: 52 KGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEII 111
+G + G + H+ VLRL+ +RV+LF+G+G + + I +++ G+ + L
Sbjct: 12 QGREASLTGSDAHHLQHVLRLTPGERVELFDGRGTVYQAAIDHIE-PGLTRLTLLSSSDT 70
Query: 112 PPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSSS--ISENRVDRLERV 169
PP +H+ G LKG + D +V+KCTELG S+ P ++ +++ ++ R +R+
Sbjct: 71 PPDRLAIHL--GQAMLKGKKMDLVVQKCTELGVRSLRPYTSQHTTTPPPGAEKLARWQRI 128
Query: 170 ILAASKQCQRLHEMIFKPPVDIDDLSHLIAQSKLPLIA--TAKATPVLNALTSLEKQASG 227
I + KQC + PP +L A L LI +A P+ N L AS
Sbjct: 129 IHESCKQCNQPWPPSCHPPQTFAELLADAADFDLRLICWEEPEAPPLSNIAEQLGAPASV 188
Query: 228 LIIIGPEGDFT 238
L++IGPEG F+
Sbjct: 189 LVLIGPEGGFS 199
>F0IG88_9FLAO (tr|F0IG88) Ribosomal RNA small subunit methyltransferase E
OS=Capnocytophaga sp. oral taxon 338 str. F0234
GN=HMPREF9071_1585 PE=3 SV=1
Length = 268
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 105/208 (50%), Gaps = 21/208 (10%)
Query: 43 FFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDF 102
F+ E L P + N++ + +E H+ +VLR D + + +G+G L EG I++++
Sbjct: 29 FYHENLSP-ESNLILLDKEESTHIHRVLRRKIGDLLYITDGRGNLYEGVIQDINDKKCSI 87
Query: 103 VALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSSSISENR 162
V + + PP QLH+ T R +W +EK TE+G +TP++ E S + +
Sbjct: 88 V-IQSCTLTPPLPYQLHLAVA-PTKMNERYEWFLEKATEIGVHEITPIICEHSERKTV-K 144
Query: 163 VDRLERVILAASKQCQRLHEMIFKPPV--------DIDDLSHLIA---QSKLPLIATAKA 211
++R E++IL+A KQ + I P+ +I + + IA + K L+ +
Sbjct: 145 IERFEKIILSAMKQSLQCFRPILNKPINMLNWLDNNIHEKNRFIAHCQEGKKELLFDKLS 204
Query: 212 TPVLNALTSLEKQASGLIIIGPEGDFTE 239
T N + + LIIIGPEGDF+E
Sbjct: 205 TSYHNNIRDI------LIIIGPEGDFSE 226
>D9SIB7_GALCS (tr|D9SIB7) Ribosomal RNA small subunit methyltransferase E
OS=Gallionella capsiferriformans (strain ES-2)
GN=Galf_0129 PE=3 SV=1
Length = 243
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 99/207 (47%), Gaps = 13/207 (6%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
+PRF+ P++G + D H ++VLRL D VQLF+G G G I +M TG
Sbjct: 1 MPRFYCPPPIPAQG-AFNLPADAAHHASRVLRLREGDSVQLFDGTGHEYHGAITDM--TG 57
Query: 100 IDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTER----- 154
V + I + L + + DW+++K TELGA+ + PL T R
Sbjct: 58 KQVVVGDIVHIEADRESPLQIVLAQALCSSEKMDWVIQKATELGATEIQPLATGRSVAKL 117
Query: 155 SSSISENRVDRLERVILAASKQCQRLHEMIFKPPVDIDD-LSHLIAQSKLPLIATAKATP 213
S+ + R + ++V ++A +QC R + PPV+I L H++ I +
Sbjct: 118 SADRAAKRTEHWQQVAISACEQCGRNVLPVIHPPVEIGTWLQHMLDSDMSKYILLPQGA- 176
Query: 214 VLNALTSLEKQASG-LIIIGPEGDFTE 239
+L EK SG +++IG EG FTE
Sbjct: 177 --KSLQEQEKPQSGAVLLIGAEGGFTE 201
>Q00VQ4_OSTTA (tr|Q00VQ4) WGS project CAID00000000 data, contig chromosome 14
OS=Ostreococcus tauri GN=Ot14g03100 PE=4 SV=1
Length = 317
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 104/221 (47%), Gaps = 23/221 (10%)
Query: 40 LPRFF-SETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNM--D 96
L RF+ E L + R+ +E H K LRL V++ +G G L + ++
Sbjct: 44 LHRFYVDEELRAN--TTTRLSREETRHAAKALRLRPGVAVEVCDGVGRLARATLGDVLDG 101
Query: 97 RTGIDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLL---TE 153
R +D + V F LKGGR DWLVEKC ELGA + PLL +E
Sbjct: 102 RFVVDVEDVRVDVDGRSSGIDWDVVCAFAGLKGGRGDWLVEKCAELGARRLVPLLASRSE 161
Query: 154 RSSSISEN--------RVDRLERVILAASKQCQRLHEMIFKPPVDIDDLSHLIAQ----- 200
R S+ E+ R R +RV AASKQ R E+ D++ L +A+
Sbjct: 162 RRSTRGEDGEGDARRGRAGRWDRVARAASKQSLRARELAVGETTDVEALCREMAREREVG 221
Query: 201 SKLPLIATAKATPVLNALTSLEKQA--SGLIIIGPEGDFTE 239
+++ L+A PV + + +A +G +++GPEGDFT+
Sbjct: 222 TRVTLLALQGGAPVADVAREVGPRAMRAGRVVVGPEGDFTD 262
>J3B7Z1_9BURK (tr|J3B7Z1) Ribosomal RNA small subunit methyltransferase E
OS=Burkholderia sp. BT03 GN=PMI06_06347 PE=3 SV=1
Length = 246
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/210 (34%), Positives = 103/210 (49%), Gaps = 17/210 (8%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
+PRFF T P K + + DE +VLRL D V LFNG GG I +MDR G
Sbjct: 1 MPRFFVGT--PFKTDDIVSLPDEVNRHVRVLRLQPGDTVSLFNGTGGEYGAEIVDMDRHG 58
Query: 100 --IDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERS-S 156
+ D+E PP QL + G + DWL+EK TELGAS PL T RS
Sbjct: 59 TIVRIGPFRDVEAEPP--YQLTLAQGIA--GSDKMDWLIEKATELGASEFVPLTTTRSVV 114
Query: 157 SISENRVDR----LERVILAASKQC--QRLHEMIFKPPVD--IDDLSHLIAQSKLPLIAT 208
+S R R +R++ A+ +QC RL E++ + + + A +L L+ +
Sbjct: 115 RLSGERAQRRQVHWQRIVQASCEQCGRNRLPEVMPTRELATWLSSMPKQPADGELRLLLS 174
Query: 209 AKATPVLNALTSLEKQASGLIIIGPEGDFT 238
+A+ +AL S L+++GPEG F+
Sbjct: 175 PRASVPFSALPSEPPTVRALVLVGPEGGFS 204
>I5CD20_9BURK (tr|I5CD20) Ribosomal RNA small subunit methyltransferase E
OS=Burkholderia terrae BS001 GN=WQE_48159 PE=3 SV=1
Length = 246
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/210 (34%), Positives = 103/210 (49%), Gaps = 17/210 (8%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
+PRFF T P K + + DE +VLRL D V LFNG GG I +MDR G
Sbjct: 1 MPRFFVGT--PFKTDDIVSLPDEVNRHVRVLRLQPGDTVSLFNGTGGEYGAEIVDMDRHG 58
Query: 100 --IDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERS-S 156
+ D+E PP QL + G + DWL+EK TELGAS PL T RS
Sbjct: 59 TIVRIGPFRDVEAEPP--YQLTLAQGIA--GSDKMDWLIEKATELGASEFVPLTTTRSVV 114
Query: 157 SISENRVDR----LERVILAASKQC--QRLHEMIFKPPVD--IDDLSHLIAQSKLPLIAT 208
+S R R +R++ A+ +QC RL E++ + + + A +L L+ +
Sbjct: 115 RLSGERAQRRQVHWQRIVQASCEQCGRNRLPEVMPTRELATWLSSMPKQPADGELRLLLS 174
Query: 209 AKATPVLNALTSLEKQASGLIIIGPEGDFT 238
+A+ +AL S L+++GPEG F+
Sbjct: 175 PRASVPFSALPSEPPTVRALVLVGPEGGFS 204
>A6C9W4_9PLAN (tr|A6C9W4) Ribosomal RNA small subunit methyltransferase E
OS=Planctomyces maris DSM 8797 GN=PM8797T_07227 PE=3
SV=1
Length = 242
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/181 (34%), Positives = 93/181 (51%), Gaps = 4/181 (2%)
Query: 60 GDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPPPNTQLH 119
G E H+ VLR+ D V +FNG G EG I R ++ V +T +Q
Sbjct: 20 GSEAHHLLHVLRMQAGDTVLVFNGTGAEAEGVISKTSRKTVE-VQVTARHA-AQAKSQTP 77
Query: 120 VFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSS-SISENRVDRLERVILAASKQCQ 178
+ KG R WLVEK ELG + + PLLT RSS +NR+ +L++ I++A+KQ
Sbjct: 78 LILATAVPKGDRFRWLVEKAAELGVTKLVPLLTRRSSVDPGQNRLKKLQQTIVSAAKQSG 137
Query: 179 RLHEMIFKPPVDIDDLSHLIAQSKLPLIATAKATPVLNALTSLEKQASGLII-IGPEGDF 237
++ M + D+ I+Q++ L+ A ++ S EK+ S ++I IGPEG F
Sbjct: 138 QIQLMELTEVQNWDEFLSEISQTESRLLIADPAGSGVDFFRSGEKRESPVVILIGPEGGF 197
Query: 238 T 238
T
Sbjct: 198 T 198
>Q88D43_PSEPK (tr|Q88D43) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas putida (strain KT2440) GN=PP_4985 PE=3
SV=1
Length = 239
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/181 (34%), Positives = 96/181 (53%), Gaps = 14/181 (7%)
Query: 65 HMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPPPNTQLHVFSGF 124
++ +VLR++ D VQLF+G G G + + + + V+L D ++ LHV G
Sbjct: 26 YIGRVLRMAPGDAVQLFDGSGQEYRGQLLEVGKKTVR-VSL-DQAFAGQADSPLHVHLGQ 83
Query: 125 GTLKGGRADWLVEKCTELGASSVTPLLTERSS-SISENRVDR----LERVILAASKQCQR 179
G +G R DW ++K TELGA+ +TP+++ER + + R D+ +V ++A +QC R
Sbjct: 84 GLSRGERMDWAIQKATELGANEITPIVSERCEVRLKDERADKRLAHWRQVAISACEQCGR 143
Query: 180 LHEMIFKPPVDIDD-LSHLIAQSKLPLIATAKATPVLNALTSLEKQASGLIIIGPEGDFT 238
+ PPV + + LS A KL L PV L S EK A+ +IGPEG +
Sbjct: 144 STLPVIHPPVTLAEWLSSTKADLKLVL------HPVAEPLISHEKPATLAFVIGPEGGLS 197
Query: 239 E 239
E
Sbjct: 198 E 198
>E4R9E0_PSEPB (tr|E4R9E0) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas putida (strain BIRD-1) GN=PPUBIRD1_4772
PE=3 SV=1
Length = 239
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/181 (34%), Positives = 96/181 (53%), Gaps = 14/181 (7%)
Query: 65 HMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPPPNTQLHVFSGF 124
++ +VLR++ D VQLF+G G G + + + + V+L D ++ LHV G
Sbjct: 26 YIGRVLRMAPGDAVQLFDGSGQEYRGQLLEVGKKTVR-VSL-DQAFAGQADSPLHVHLGQ 83
Query: 125 GTLKGGRADWLVEKCTELGASSVTPLLTERSS-SISENRVDR----LERVILAASKQCQR 179
G +G R DW ++K TELGA+ +TP+++ER + + R D+ +V ++A +QC R
Sbjct: 84 GLSRGERMDWAIQKATELGANEITPIVSERCEVRLKDERADKRLAHWRQVAISACEQCGR 143
Query: 180 LHEMIFKPPVDIDD-LSHLIAQSKLPLIATAKATPVLNALTSLEKQASGLIIIGPEGDFT 238
+ PPV + + LS A KL L PV L S EK A+ +IGPEG +
Sbjct: 144 STLPVIHPPVTLAEWLSSTKADLKLVL------HPVAEPLISHEKPATLAFVIGPEGGLS 197
Query: 239 E 239
E
Sbjct: 198 E 198
>L0FR48_PSEPU (tr|L0FR48) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas putida HB3267 GN=B479_24390 PE=3 SV=1
Length = 239
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 96/181 (53%), Gaps = 14/181 (7%)
Query: 65 HMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPPPNTQLHVFSGF 124
++ +VLR++ D VQLF+G G G + + + + V+L D + ++ LHV G
Sbjct: 26 YIGRVLRMAPGDAVQLFDGSGQEYRGQLLEVGKKTVR-VSL-DQALAGQADSPLHVHLGQ 83
Query: 125 GTLKGGRADWLVEKCTELGASSVTPLLTER-----SSSISENRVDRLERVILAASKQCQR 179
G +G R DW ++K TELGA+ +TP+++ER ++ R+ +V ++A +QC R
Sbjct: 84 GLSRGERMDWAIQKATELGANEITPIVSERCEVRLKDERADKRLAHWRQVAISACEQCGR 143
Query: 180 LHEMIFKPPVDIDD-LSHLIAQSKLPLIATAKATPVLNALTSLEKQASGLIIIGPEGDFT 238
+ PPV + + LS A KL L PV LTS K A+ +IGPEG +
Sbjct: 144 STLPVIHPPVTLAEWLSSAKADLKLVL------HPVAEPLTSHAKPATLAFLIGPEGGLS 197
Query: 239 E 239
E
Sbjct: 198 E 198
>N9UBH7_PSEPU (tr|N9UBH7) 16S ribosomal RNA methyltransferase RsmE OS=Pseudomonas
putida TRO1 GN=C206_20321 PE=4 SV=1
Length = 239
Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 95/181 (52%), Gaps = 14/181 (7%)
Query: 65 HMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPPPNTQLHVFSGF 124
++ +VLR++ D VQLF+G G G + + + + V+L D ++ LHV G
Sbjct: 26 YIGRVLRMAPGDAVQLFDGSGQEYRGQLLEVGKKTVR-VSL-DQAFAGQADSPLHVHLGQ 83
Query: 125 GTLKGGRADWLVEKCTELGASSVTPLLTER-----SSSISENRVDRLERVILAASKQCQR 179
G +G R DW ++K TELGA+ +TP+++ER ++ R+ +V ++A +QC R
Sbjct: 84 GLSRGERMDWAIQKATELGANEITPIVSERCEVRLKDERADKRLAHWRQVAISACEQCGR 143
Query: 180 LHEMIFKPPVDIDD-LSHLIAQSKLPLIATAKATPVLNALTSLEKQASGLIIIGPEGDFT 238
+ PPV + + LS A KL L PV LTS K A+ +IGPEG +
Sbjct: 144 STLPVIHPPVTLAEWLSSTEADLKLVL------HPVAEPLTSHAKPATLAFVIGPEGGLS 197
Query: 239 E 239
E
Sbjct: 198 E 198
>I7AWE4_PSEPU (tr|I7AWE4) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas putida DOT-T1E GN=T1E_1122 PE=3 SV=1
Length = 239
Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 95/181 (52%), Gaps = 14/181 (7%)
Query: 65 HMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPPPNTQLHVFSGF 124
++ +VLR++ D VQLF+G G G + + + + V+L D ++ LHV G
Sbjct: 26 YIGRVLRMAPGDAVQLFDGSGQEYRGQLLEVGKKTVR-VSL-DQAFAGQADSPLHVHLGQ 83
Query: 125 GTLKGGRADWLVEKCTELGASSVTPLLTER-----SSSISENRVDRLERVILAASKQCQR 179
G +G R DW ++K TELGA+ +TP+++ER ++ R+ +V ++A +QC R
Sbjct: 84 GLSRGERMDWAIQKATELGANEITPIVSERCEVRLKDERADKRLAHWRQVAISACEQCGR 143
Query: 180 LHEMIFKPPVDIDD-LSHLIAQSKLPLIATAKATPVLNALTSLEKQASGLIIIGPEGDFT 238
+ PPV + + LS A KL L PV LTS K A+ +IGPEG +
Sbjct: 144 STLPVIHPPVTLAEWLSSTEADLKLVL------HPVAEPLTSHAKPATLAFVIGPEGGLS 197
Query: 239 E 239
E
Sbjct: 198 E 198
>D5SXZ3_PLAL2 (tr|D5SXZ3) Ribosomal RNA small subunit methyltransferase E
OS=Planctomyces limnophilus (strain ATCC 43296 / DSM
3776 / IFAM 1008 / 290) GN=Plim_3975 PE=3 SV=1
Length = 251
Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 104/212 (49%), Gaps = 15/212 (7%)
Query: 40 LPRFFS-ETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRT 98
+ RFF E L P + ++G E H VLR+ ++ LF+G G + R
Sbjct: 1 MSRFFHPELLKPLDSGELLLEGSEAHHALHVLRVKTGQQIVLFDGHGNSATAEVIRPGRK 60
Query: 99 GIDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERS-SS 157
+ ++ ++ PP QL + T KG R DW+VEK TELG S PL+T+RS
Sbjct: 61 DVGLRIVSGIQHSSPPALQLTLL--VATPKGDRLDWMVEKLTELGVSRFVPLITQRSVVD 118
Query: 158 ISENRVDRLERVILAASKQCQRLHEMIFKPPVDIDDL-------SHLIAQSKLPLI---A 207
E++++RL + +++A KQ R M + P + D + + PL+ A
Sbjct: 119 PRESKLERLRQTVISACKQSHRDWLMEIEEPARLTDWLNRKDHPTQWFGSLQAPLVARKA 178
Query: 208 TAKATPVLNALTSLEKQASGL-IIIGPEGDFT 238
+ + P+ +A + + + + L I+IGPEG +T
Sbjct: 179 SNDSQPIASANSRMPLENTSLAILIGPEGGWT 210
>B0VH27_CLOAI (tr|B0VH27) Ribosomal RNA small subunit methyltransferase E
OS=Cloacamonas acidaminovorans (strain Evry)
GN=CLOAM0759 PE=3 SV=1
Length = 233
Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 100/196 (51%), Gaps = 17/196 (8%)
Query: 51 SKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEI 110
S ++ V+G+EF H+ V R + + V+L +G G + EG + + + + + +E
Sbjct: 11 SDKKIIAVEGEEFHHLINVKRTAIGELVKLNSGSGLMAEGKLTEIHKNS-AVIEIIKIET 69
Query: 111 IPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSSSI-SENRVDRLERV 169
P P + F +K + L+EKCTELG ++ P+LT+ S I S+N R +R
Sbjct: 70 FPFPERPFAI--AFALIKNKHDELLIEKCTELGVTAFYPMLTDYSVRIPSKNTTQRFKRT 127
Query: 170 ILAASKQCQ-----RLHE-MIFKPPVDIDDLSHLIAQSKLPLIATAKATPVLNALTSLEK 223
LAA KQC R++E + FK ++ +I++ +P++ + K +++L
Sbjct: 128 ALAAIKQCDNPWLPRINEPLSFKQAIE-----KIISEGWIPVLCSEKRP--AKKISALPN 180
Query: 224 QASGLIIIGPEGDFTE 239
IIGPEG F+E
Sbjct: 181 NIKPCFIIGPEGGFSE 196
>I4NAT8_9PSED (tr|I4NAT8) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas sp. M47T1 GN=PMM47T1_01030 PE=3 SV=1
Length = 239
Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 90/181 (49%), Gaps = 14/181 (7%)
Query: 65 HMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPPPNTQLHVFSGF 124
++ +VLR++ D VQLF+G G G + + + + D P + L G
Sbjct: 26 YIGRVLRMAEGDAVQLFDGSGQEYRGALLEVGKKRVRV--QLDEAFAGQPESSLKTHLGQ 83
Query: 125 GTLKGGRADWLVEKCTELGASSVTPLLTER-----SSSISENRVDRLERVILAASKQCQR 179
G +G R DW ++K TELGAS +TP+++ER +E R +++ ++A +QC R
Sbjct: 84 GLSRGERMDWAIQKATELGASEITPIVSERCEVRLKDERAEKRQAHWQQIAVSACEQCGR 143
Query: 180 LHEMIFKPPVDIDD-LSHLIAQSKLPLIATAKATPVLNALTSLEKQASGLIIIGPEGDFT 238
+ PP+ + D L A+ KL L PV L S EK AS +IGPEG +
Sbjct: 144 STVPVIHPPLVLADWLKACDAELKLVL------HPVAEPLVSHEKPASLAFLIGPEGGLS 197
Query: 239 E 239
+
Sbjct: 198 D 198
>F8FVB7_PSEPU (tr|F8FVB7) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas putida S16 GN=PPS_4829 PE=3 SV=1
Length = 239
Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 96/181 (53%), Gaps = 14/181 (7%)
Query: 65 HMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPPPNTQLHVFSGF 124
++ +VLR++ D VQLF+G G G + + + + V+L D + ++ LHV G
Sbjct: 26 YIGRVLRMAPGDAVQLFDGSGQEYRGQLLEVGKKTVR-VSL-DQALAGQADSPLHVHLGQ 83
Query: 125 GTLKGGRADWLVEKCTELGASSVTPLLTER-----SSSISENRVDRLERVILAASKQCQR 179
G +G R DW ++K TELGA+ +TP+++ER ++ R+ +V ++A +QC R
Sbjct: 84 GLSRGERMDWAIQKATELGANEITPIVSERCEVRLKDERADKRLAHWRQVAISACEQCGR 143
Query: 180 LHEMIFKPPVDIDD-LSHLIAQSKLPLIATAKATPVLNALTSLEKQASGLIIIGPEGDFT 238
+ PPV + + L+ A KL L PV LTS K A+ +IGPEG +
Sbjct: 144 STLPVIHPPVTLAEWLNSANADLKLVL------HPVAEPLTSHAKPATLAFLIGPEGGLS 197
Query: 239 E 239
E
Sbjct: 198 E 198
>C1N1B7_MICPC (tr|C1N1B7) Predicted protein (Fragment) OS=Micromonas pusilla
(strain CCMP1545) GN=MICPUCDRAFT_20469 PE=4 SV=1
Length = 184
Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 57/138 (41%), Positives = 72/138 (52%), Gaps = 15/138 (10%)
Query: 117 QLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSSSISENRVDRLERVILAASKQ 176
+ V G LKGGRADWLVEK ELGA+S+ P LT RS+ R R RV AASKQ
Sbjct: 1 RWEVAVACGGLKGGRADWLVEKLAELGAASLAPTLTARSAVTKRGREGRWVRVAAAASKQ 60
Query: 177 CQRLHEMIFKPPVDIDDLSHLIAQSKLPLIATAKATPVLNALTSL--------------- 221
C R H ++ + P D L + + + L+A A A P+ +AL
Sbjct: 61 CLRTHALVVESPCAFDALLRRVRDAPIALLAAAGAPPLRDALRDADVDDGDDGETASGPG 120
Query: 222 EKQASGLIIIGPEGDFTE 239
GL+I+GPEGDFTE
Sbjct: 121 RGATGGLLIVGPEGDFTE 138
>B0KM10_PSEPG (tr|B0KM10) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas putida (strain GB-1) GN=PputGB1_5035 PE=3
SV=1
Length = 239
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 95/181 (52%), Gaps = 14/181 (7%)
Query: 65 HMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPPPNTQLHVFSGF 124
++ +VLR++ D VQLF+G G G + + + + V+L D + ++ LHV G
Sbjct: 26 YIGRVLRMAPGDAVQLFDGSGQEYLGQLLEVGKKTVR-VSL-DQALTGQADSPLHVHLGQ 83
Query: 125 GTLKGGRADWLVEKCTELGASSVTPLLTER-----SSSISENRVDRLERVILAASKQCQR 179
G +G R DW ++K TELGA+ +TP+++ER ++ R+ +V ++A +QC R
Sbjct: 84 GLSRGERMDWAIQKATELGANEITPIVSERCEVRLKDERADKRLAHWRQVAISACEQCGR 143
Query: 180 LHEMIFKPPVDIDD-LSHLIAQSKLPLIATAKATPVLNALTSLEKQASGLIIIGPEGDFT 238
+ PPV + + LS A KL L PV LTS K A +IGPEG +
Sbjct: 144 STLPVIHPPVPLTEWLSSTQADLKLVL------HPVAEPLTSHAKPAGLAFLIGPEGGLS 197
Query: 239 E 239
E
Sbjct: 198 E 198
>B2JGY9_BURP8 (tr|B2JGY9) Ribosomal RNA small subunit methyltransferase E
OS=Burkholderia phymatum (strain DSM 17167 / STM815)
GN=Bphy_2601 PE=3 SV=1
Length = 251
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 97/210 (46%), Gaps = 17/210 (8%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
+PRFF T P K + + DE +VLRL D V LFNG GG I +MDR G
Sbjct: 6 MPRFFVGT--PFKTDDIVSLPDEVNRHVRVLRLQPGDTVSLFNGDGGEYGAEIVDMDRHG 63
Query: 100 --IDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERS-- 155
+ V D+E PP L G + DWL+EK TELGA PL T RS
Sbjct: 64 TIVRIVGFRDIECEPPYRLTL----AQGIAGSDKMDWLIEKATELGACEFVPLTTTRSVV 119
Query: 156 ---SSISENRVDRLERVILAASKQCQRLHEMIFKPPVDIDDLSHLIAQ----SKLPLIAT 208
++ R +R++ A+ +QC R P ++ + + +L L+ +
Sbjct: 120 RLAGERAQRRQVHWQRIVQASCEQCGRNRLPQVMPTRELATWLSTMPKEPVDGELRLLLS 179
Query: 209 AKATPVLNALTSLEKQASGLIIIGPEGDFT 238
+A+ +AL + L+++GPEG F+
Sbjct: 180 PRASVPFSALPVEPPKVRALVLVGPEGGFS 209
>F3HD58_PSEYM (tr|F3HD58) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas syringae pv. maculicola str. ES4326
GN=PMA4326_00370 PE=3 SV=1
Length = 239
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 103/205 (50%), Gaps = 14/205 (6%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
L RFF+ET P S G + + +++VLR++ D +QLF+G G G + + +
Sbjct: 3 LSRFFTET-PLSLGEHELPEAQAHY-ISRVLRMTEGDALQLFDGSGLEFRGTLLEVGKKR 60
Query: 100 IDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTER----- 154
+ V LT+ + L + G G +G R DW ++K TELG S +TP+++ER
Sbjct: 61 VR-VQLTE-SFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIISERCEVRL 118
Query: 155 SSSISENRVDRLERVILAASKQCQRLHEMIFKPPVDIDDLSHLIAQSKLPLIATAKATPV 214
+E R +++ ++A +QC R + PP+ + D L ++ L L+ PV
Sbjct: 119 KDERAEKRQAHWQQIAISACEQCGRSVVPVIHPPMPLADWIRL-TEADLKLV----LHPV 173
Query: 215 LNALTSLEKQASGLIIIGPEGDFTE 239
LTS K AS +IGPEG E
Sbjct: 174 AEPLTSHAKPASLAFLIGPEGGLNE 198
>C2FZ62_9SPHI (tr|C2FZ62) Ribosomal RNA small subunit methyltransferase E
OS=Sphingobacterium spiritivorum ATCC 33300
GN=HMPREF0765_2618 PE=3 SV=1
Length = 237
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 98/202 (48%), Gaps = 14/202 (6%)
Query: 43 FFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMD--RTGI 100
F++ + P N + + +E H +VLRL+N D+V L +G+GG I + RT +
Sbjct: 4 FYTPEIEPHFANFILTE-EESKHAVRVLRLANRDQVHLIDGRGGFYRAEIIDAHPKRTAL 62
Query: 101 DFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSSSISE 160
+ + E P+ LH+ T R +W +EK TE+G +TP+++E S E
Sbjct: 63 QIIEI--QEAFQKPSYHLHMAVA-PTKNIERFEWFLEKATEVGVQEITPVISEHSER-KE 118
Query: 161 NRVDRLERVILAASKQCQRLHEMIFKPPVDIDDL----SHLIAQSKLPLIATAKATPVLN 216
+ DRL +VI+AA KQ + + P + + + + AQ + ++ +
Sbjct: 119 VKPDRLNKVIVAAMKQSYKAYMPKLNPAITLTNFLKQQEQVSAQKAIAHCVDSEKKYLGQ 178
Query: 217 ALTSLEKQASGLIIIGPEGDFT 238
T Q +I+IGPEGDF+
Sbjct: 179 VFTP---QQDYVILIGPEGDFS 197
>E2MM37_PSEUB (tr|E2MM37) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas syringae pv. tomato T1 GN=PSPTOT1_3489
PE=3 SV=1
Length = 239
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 103/205 (50%), Gaps = 14/205 (6%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
L RFF+ET P S G + + +++VLR++ D +QLF+G G G + + +
Sbjct: 3 LSRFFTET-PLSLGEHELPEAQAHY-ISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKKR 60
Query: 100 IDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTER----- 154
+ V LT+ + L + G G +G R DW ++K TELG S +TP+++ER
Sbjct: 61 VR-VQLTE-RFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSERCEVRL 118
Query: 155 SSSISENRVDRLERVILAASKQCQRLHEMIFKPPVDIDDLSHLIAQSKLPLIATAKATPV 214
+E R +++ ++A +QC R + PP+ + D L ++ L L+ PV
Sbjct: 119 KDERAEKRQAHWQQIAISACEQCGRSVVPVIHPPMPLADWIKL-TEADLKLV----LHPV 173
Query: 215 LNALTSLEKQASGLIIIGPEGDFTE 239
LTS K AS +IGPEG +
Sbjct: 174 AEPLTSHAKPASLAFLIGPEGGLND 198
>I2BR80_PSEFL (tr|I2BR80) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas fluorescens A506 GN=PflA506_5027 PE=3
SV=1
Length = 239
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 104/206 (50%), Gaps = 16/206 (7%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
L RFF++T P S G+ + + +++VLR+ D VQLF+G G G + + +
Sbjct: 3 LSRFFTDT-PLSLGDHELPEAQAHY-ISRVLRMGEGDAVQLFDGSGQEFSGTLLEVGKKR 60
Query: 100 IDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSS-SI 158
+ V LTD + LH+ G G +G R DW ++K TELG +++TP+ ++R +
Sbjct: 61 VT-VQLTD-SFAGQAESPLHIHLGQGLSRGERMDWAIQKATELGVNAITPIFSDRCEVRL 118
Query: 159 SENRVDR----LERVILAASKQCQRLHEMIFKPPVDIDD-LSHLIAQSKLPLIATAKATP 213
+ R D+ +V ++A +QC R + PP+ + D L A KL L P
Sbjct: 119 KDERADKRLLHWRQVAISACEQCGRSTVPVIHPPLLLADWLKQTEADLKLVL------HP 172
Query: 214 VLNALTSLEKQASGLIIIGPEGDFTE 239
V + S K +S +IGPEG T+
Sbjct: 173 VAEPMISHAKPSSLAFLIGPEGGLTD 198
>K2SF10_9PSED (tr|K2SF10) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas avellanae BPIC 631 GN=Pav631_4625 PE=3
SV=1
Length = 239
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 103/205 (50%), Gaps = 14/205 (6%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
L RFF+ET P S G + + +++VLR++ D +QLF+G G G + + +
Sbjct: 3 LSRFFTET-PLSLGEHELPEAQAHY-ISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKKR 60
Query: 100 IDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTER----- 154
+ V LT+ + L + G G +G R DW ++K TELG S +TP+++ER
Sbjct: 61 VR-VQLTEC-FAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSERCEVRL 118
Query: 155 SSSISENRVDRLERVILAASKQCQRLHEMIFKPPVDIDDLSHLIAQSKLPLIATAKATPV 214
+E R +++ ++A +QC R + PP+ + D L ++ L L+ PV
Sbjct: 119 KDERAEKRQAHWQQIAISACEQCGRSVVPVIHPPMPLADWIKL-TEADLKLV----LHPV 173
Query: 215 LNALTSLEKQASGLIIIGPEGDFTE 239
LTS K AS +IGPEG +
Sbjct: 174 AEPLTSHAKPASLAFLIGPEGGLND 198
>Q87V65_PSESM (tr|Q87V65) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas syringae pv. tomato (strain DC3000)
GN=PSPTO_5076 PE=3 SV=1
Length = 239
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 103/205 (50%), Gaps = 14/205 (6%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
L RFF+ET P S G + + +++VLR++ D +QLF+G G G + + +
Sbjct: 3 LSRFFTET-PLSLGEHELPEAQAHY-ISRVLRMTEGDALQLFDGSGQEFSGTLLEVGKKR 60
Query: 100 IDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTER----- 154
+ V LT+ + L + G G +G R DW ++K TELG S +TP+++ER
Sbjct: 61 VR-VQLTE-RFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSERCEVRL 118
Query: 155 SSSISENRVDRLERVILAASKQCQRLHEMIFKPPVDIDDLSHLIAQSKLPLIATAKATPV 214
+E R +++ ++A +QC R + PP+ + D L ++ L L+ PV
Sbjct: 119 KDERAEKRQAHWQQIAISACEQCGRSVVPVIHPPMPLADWIKL-TEADLKLV----LHPV 173
Query: 215 LNALTSLEKQASGLIIIGPEGDFTE 239
LTS K AS +IGPEG +
Sbjct: 174 AEPLTSHAKPASLAFLIGPEGGLND 198
>F3IG15_PSESL (tr|F3IG15) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas syringae pv. lachrymans str. M302278
GN=PLA106_08240 PE=3 SV=1
Length = 275
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 103/205 (50%), Gaps = 14/205 (6%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
L RFF+ET P S G + + +++VLR++ D +QLF+G G G + + +
Sbjct: 3 LSRFFTET-PLSLGEHELPEAQAHY-ISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKKR 60
Query: 100 IDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTER----- 154
+ V LT+ + L + G G +G R DW ++K TELG S +TP+++ER
Sbjct: 61 VR-VQLTE-RFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSERCEVRL 118
Query: 155 SSSISENRVDRLERVILAASKQCQRLHEMIFKPPVDIDDLSHLIAQSKLPLIATAKATPV 214
+E R +++ ++A +QC R + PP+ + D L ++ L L+ PV
Sbjct: 119 KDERAEKRQAHWQQIAISACEQCGRSVVPVIHPPMPLADWIKL-TEADLKLV----LHPV 173
Query: 215 LNALTSLEKQASGLIIIGPEGDFTE 239
LTS K AS +IGPEG +
Sbjct: 174 AEPLTSHAKPASLAFLIGPEGGLND 198
>L7GAN6_PSESX (tr|L7GAN6) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas syringae BRIP34876 GN=A979_08613 PE=3
SV=1
Length = 239
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 103/206 (50%), Gaps = 16/206 (7%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
L RFF+ET P S G + + +++VLR++ D +QLF+G G G + + +
Sbjct: 3 LSRFFTET-PLSLGEHELPEAQAHY-ISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKKR 60
Query: 100 IDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTER----- 154
+ V LT+ + L + G G +G R DW ++K TELG S +TP+++ER
Sbjct: 61 V-HVQLTE-SFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSERCEVRL 118
Query: 155 SSSISENRVDRLERVILAASKQCQRLHEMIFKPPVDIDD-LSHLIAQSKLPLIATAKATP 213
+E R +++ ++A +QC R + P+ + + + H A KL L P
Sbjct: 119 KDERAEKRQAHWQQIAISACEQCGRSVVPVIHAPIPLAEWIKHTEADLKLVL------HP 172
Query: 214 VLNALTSLEKQASGLIIIGPEGDFTE 239
V LTS +K AS +IGPEG +
Sbjct: 173 VAEPLTSHDKPASLAFLIGPEGGLND 198
>L7G4X3_PSESX (tr|L7G4X3) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas syringae BRIP34881 GN=A987_16483 PE=3
SV=1
Length = 239
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 103/206 (50%), Gaps = 16/206 (7%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
L RFF+ET P S G + + +++VLR++ D +QLF+G G G + + +
Sbjct: 3 LSRFFTET-PLSLGEHELPEAQAHY-ISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKKR 60
Query: 100 IDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTER----- 154
+ V LT+ + L + G G +G R DW ++K TELG S +TP+++ER
Sbjct: 61 V-HVQLTE-SFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSERCEVRL 118
Query: 155 SSSISENRVDRLERVILAASKQCQRLHEMIFKPPVDIDD-LSHLIAQSKLPLIATAKATP 213
+E R +++ ++A +QC R + P+ + + + H A KL L P
Sbjct: 119 KDERAEKRQAHWQQIAISACEQCGRSVVPVIHAPIPLAEWIKHTEADLKLVL------HP 172
Query: 214 VLNALTSLEKQASGLIIIGPEGDFTE 239
V LTS +K AS +IGPEG +
Sbjct: 173 VAEPLTSHDKPASLAFLIGPEGGLND 198
>F3FKK7_PSESX (tr|F3FKK7) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas syringae pv. japonica str. M301072
GN=PSYJA_17896 PE=3 SV=1
Length = 239
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 103/206 (50%), Gaps = 16/206 (7%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
L RFF+ET P S G + + +++VLR++ D +QLF+G G G + + +
Sbjct: 3 LSRFFTET-PLSLGEHELPEAQAHY-ISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKKR 60
Query: 100 IDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTER----- 154
+ V LT+ + L + G G +G R DW ++K TELG S +TP+++ER
Sbjct: 61 V-HVQLTE-SFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSERCEVRL 118
Query: 155 SSSISENRVDRLERVILAASKQCQRLHEMIFKPPVDIDD-LSHLIAQSKLPLIATAKATP 213
+E R +++ ++A +QC R + P+ + + + H A KL L P
Sbjct: 119 KDERAEKRQAHWQQIAISACEQCGRSVVPVIHAPIPLAEWIKHTEADLKLVL------HP 172
Query: 214 VLNALTSLEKQASGLIIIGPEGDFTE 239
V LTS +K AS +IGPEG +
Sbjct: 173 VAEPLTSHDKPASLAFLIGPEGGLND 198
>I3YZ54_AEQSU (tr|I3YZ54) Ribosomal RNA small subunit methyltransferase E
OS=Aequorivita sublithincola (strain DSM 14238 / LMG
21431 / ACAM 643 / 9-3) GN=Aeqsu_2822 PE=3 SV=1
Length = 236
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 90/184 (48%), Gaps = 4/184 (2%)
Query: 56 VRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPPPN 115
V +E H+ KVLR+ + D ++ NGKG I N + G V + EI PP +
Sbjct: 16 VTFDKEESRHIVKVLRMKDGDDFKITNGKGSFFNAEITNANPKGC-LVKIISEEIQPPMS 74
Query: 116 TQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSSSISENRVDRLERVILAASK 175
QLH+ L R +W +EK TE+G S +TP++ S + + DR E+++ +A K
Sbjct: 75 YQLHLAVAPTKL-NDRYEWFLEKATEIGISEITPIICAHSERKT-IKPDRYEKILQSAMK 132
Query: 176 QCQRLHEMIFKPPVDIDDLSHLIAQSK-LPLIATAKATPVLNALTSLEKQASGLIIIGPE 234
Q + + + V D + S+ L IA + T + + + K I+IGPE
Sbjct: 133 QSLKAYLPVLNEAVSFKDFINSEKSSEGLKCIAHCEETDKKSLKSVINKNQKITILIGPE 192
Query: 235 GDFT 238
GDF+
Sbjct: 193 GDFS 196
>F2ZF68_9PSED (tr|F2ZF68) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas syringae pv. oryzae str. 1_6
GN=POR16_04844 PE=3 SV=1
Length = 239
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 105/205 (51%), Gaps = 14/205 (6%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
L RFF+ET P S G + + ++++VLR++ D +QLF+G G G + + +
Sbjct: 3 LSRFFTET-PLSLGEH-ELPEAQVHYISRVLRMTEGDALQLFDGSGLEFRGTLLEVGKKR 60
Query: 100 IDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTER----- 154
+ V +T+ + L + G G +G R DW ++K TELG S +TP+++ER
Sbjct: 61 VR-VQMTE-RFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSERCEVRL 118
Query: 155 SSSISENRVDRLERVILAASKQCQRLHEMIFKPPVDIDDLSHLIAQSKLPLIATAKATPV 214
+E R +++ ++A +QC R + PP+ + D L ++ L L+ PV
Sbjct: 119 KDERAEKRQAHWQQIAISACEQCGRSVVPVIHPPMPLADWIKL-TEADLKLV----LHPV 173
Query: 215 LNALTSLEKQASGLIIIGPEGDFTE 239
LTS +K AS +IGPEG +
Sbjct: 174 AEPLTSHDKPASLAFLIGPEGGLND 198
>L7H6C2_PSESX (tr|L7H6C2) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas syringae BRIP39023 GN=A988_06345 PE=3
SV=1
Length = 239
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 103/206 (50%), Gaps = 16/206 (7%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
L RFF+ET P S G + + +++VLR++ D +QLF+G G G + + +
Sbjct: 3 LSRFFTET-PLSLGEHELPEAQAHY-ISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKKR 60
Query: 100 IDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTER----- 154
+ V LT+ + L + G G +G R DW ++K TELG S +TP+++ER
Sbjct: 61 V-HVQLTE-SFAGQQESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSERCEVRL 118
Query: 155 SSSISENRVDRLERVILAASKQCQRLHEMIFKPPVDIDD-LSHLIAQSKLPLIATAKATP 213
+E R +++ ++A +QC R + P+ + + + H A KL L P
Sbjct: 119 KDERAEKRQAHWQQIAISACEQCGRSVVPVIHAPMPLAEWIKHTEADLKLVL------HP 172
Query: 214 VLNALTSLEKQASGLIIIGPEGDFTE 239
V LTS +K AS +IGPEG +
Sbjct: 173 VAEPLTSHDKPASLAFLIGPEGGLND 198
>F3GX11_PSESX (tr|F3GX11) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas syringae Cit 7 GN=PSYCIT7_08169 PE=3 SV=1
Length = 239
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 103/206 (50%), Gaps = 16/206 (7%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
L RFF+ET P S G + + +++VLR++ D +QLF+G G G + + +
Sbjct: 3 LSRFFTET-PLSLGEHELPEAQAHY-ISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKKR 60
Query: 100 IDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTER----- 154
+ V LT+ + L + G G +G R DW ++K TELG S +TP+++ER
Sbjct: 61 V-HVQLTE-SFAGQQESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSERCEVRL 118
Query: 155 SSSISENRVDRLERVILAASKQCQRLHEMIFKPPVDIDD-LSHLIAQSKLPLIATAKATP 213
+E R +++ ++A +QC R + P+ + + + H A KL L P
Sbjct: 119 KDERAEKRQAHWQQIAISACEQCGRSVVPVIHAPMPLAEWIKHTEADLKLVL------HP 172
Query: 214 VLNALTSLEKQASGLIIIGPEGDFTE 239
V LTS +K AS +IGPEG +
Sbjct: 173 VAEPLTSHDKPASLAFLIGPEGGLND 198
>J2VGQ2_9PSED (tr|J2VGQ2) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas sp. GM16 GN=PMI19_02828 PE=3 SV=1
Length = 239
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 100/206 (48%), Gaps = 16/206 (7%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
L RFF + P S G + + +++VLR++ D VQLF+G G G + + +
Sbjct: 3 LSRFFIDA-PLSTGEHELPEAQAHY-ISRVLRMAEGDAVQLFDGSGHEFRGALLEVGKKR 60
Query: 100 IDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSS-SI 158
+ D + + LH+ G G +G R DW ++K TELG + +TP+ ++R +
Sbjct: 61 V--TVQIDEQFAGQVESPLHIHLGQGLSRGERMDWAIQKATELGVNEITPIFSDRCEVRL 118
Query: 159 SENRVDR----LERVILAASKQCQRLHEMIFKPPVDIDD-LSHLIAQSKLPLIATAKATP 213
+ R D+ +V ++A +QC R + PPV + D + A+ KL L P
Sbjct: 119 KDERADKRLLHWRQVAISACEQCGRSRVPVIHPPVLLADWIKQTEAELKLVL------HP 172
Query: 214 VLNALTSLEKQASGLIIIGPEGDFTE 239
V L S K A+ +IGPEG T+
Sbjct: 173 VAEPLVSHAKPATLAFLIGPEGGLTD 198
>J2NZW0_9PSED (tr|J2NZW0) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas sp. GM24 GN=PMI23_05685 PE=3 SV=1
Length = 239
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 100/206 (48%), Gaps = 16/206 (7%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
L RFF + P S G + + +++VLR++ D VQLF+G G G + + +
Sbjct: 3 LSRFFIDA-PLSTGEHELPEAQAHY-ISRVLRMAEGDAVQLFDGSGHEFRGALLEVGKKR 60
Query: 100 IDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSS-SI 158
+ D + + LH+ G G +G R DW ++K TELG + +TP+ ++R +
Sbjct: 61 V--TVQIDEQFAGQVESPLHIHLGQGLSRGERMDWAIQKATELGVNEITPIFSDRCEVRL 118
Query: 159 SENRVDR----LERVILAASKQCQRLHEMIFKPPVDIDD-LSHLIAQSKLPLIATAKATP 213
+ R D+ +V ++A +QC R + PPV + D + A+ KL L P
Sbjct: 119 KDERADKRLLHWRQVAISACEQCGRSRVPVIHPPVLLADWIKQTEAELKLVL------HP 172
Query: 214 VLNALTSLEKQASGLIIIGPEGDFTE 239
V L S K A+ +IGPEG T+
Sbjct: 173 VAEPLVSHAKPATLAFLIGPEGGLTD 198
>C0BMY5_9BACT (tr|C0BMY5) Ribosomal RNA small subunit methyltransferase E
(Precursor) OS=Flavobacteria bacterium MS024-3C
GN=Flav3CDRAFT_0476 PE=3 SV=1
Length = 237
Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 102/193 (52%), Gaps = 13/193 (6%)
Query: 51 SKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEI 110
++ N V + +E H TKVLR D + L NGKG + +G I + + V+L ++ +
Sbjct: 11 AEDNSVALSQEESKHATKVLRKKTGDLIHLTNGKGLMAQGEISDTAGKTVQ-VSLIEIHL 69
Query: 111 IPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSSSISENRV---DRLE 167
P L ++ T R +W +EK TE+G SS+TP++ ++ SE +V +R E
Sbjct: 70 QTPKPYSLDLYVA-PTKMNDRYEWFLEKATEIGLSSITPIICDQ----SERKVIKAERYE 124
Query: 168 RVILAASKQCQRLHEMIFKPPVDIDD-LSHLIAQSKLPLIATAKATPVLNALTSLEKQAS 226
+V+L+A KQ + + + P + + L I+ K L A +A + AL SL+ +
Sbjct: 125 KVLLSAMKQSLQAYLPLLHPAISLKKCLDQDISGEK--LFAHCEADKMKTALNSLDLKNK 182
Query: 227 GL-IIIGPEGDFT 238
L I IGPEGDF+
Sbjct: 183 KLSIFIGPEGDFS 195
>E2XZM8_PSEFL (tr|E2XZM8) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas fluorescens WH6 GN=yggJ PE=3 SV=1
Length = 239
Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 103/206 (50%), Gaps = 16/206 (7%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
L RFF++T P S G+ + + +++VLR+ D VQLF+G G G + + +
Sbjct: 3 LSRFFTDT-PLSLGDHELPEAQAHY-ISRVLRMGEGDAVQLFDGSGQEFLGTLLEVGKKR 60
Query: 100 IDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSS-SI 158
+ V LT + LH+ G G +G R DW ++K TELG +++TP+ +ER +
Sbjct: 61 VT-VQLTQ-HFAGQAESPLHIHLGQGLSRGERMDWAIQKATELGVNAITPIFSERCEVRL 118
Query: 159 SENRVDR----LERVILAASKQCQRLHEMIFKPPVDIDD-LSHLIAQSKLPLIATAKATP 213
+ R D+ +V ++A +QC R + PP+ + D L A KL L P
Sbjct: 119 KDERADKRLLHWRQVAISACEQCGRSTVPVIHPPLLLADWLKQTEADLKLVL------HP 172
Query: 214 VLNALTSLEKQASGLIIIGPEGDFTE 239
V + S K +S +IGPEG T+
Sbjct: 173 VAEPMVSHAKPSSLAFLIGPEGGLTD 198
>Q4ZZ99_PSEU2 (tr|Q4ZZ99) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas syringae pv. syringae (strain B728a)
GN=Psyr_0453 PE=3 SV=1
Length = 239
Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 103/206 (50%), Gaps = 16/206 (7%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
L RFF+ET P S G + + +++VLR++ D +QLF+G G G + + +
Sbjct: 3 LSRFFTET-PLSLGEHELPEAQAHY-ISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKKR 60
Query: 100 IDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTER----- 154
+ V LT+ + L + G G +G R DW ++K TELG S +TP+++ER
Sbjct: 61 V-HVQLTE-SFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSERCEVRL 118
Query: 155 SSSISENRVDRLERVILAASKQCQRLHEMIFKPPVDIDD-LSHLIAQSKLPLIATAKATP 213
+E R +++ ++A +QC R + P+ + + + H A KL L P
Sbjct: 119 KDERAEKRQAHWQQIAISACEQCGRSVVPVIHAPMPLAEWIKHTEADLKLVL------HP 172
Query: 214 VLNALTSLEKQASGLIIIGPEGDFTE 239
V LTS +K AS +IGPEG +
Sbjct: 173 VAEPLTSHDKPASLAFLIGPEGGLND 198
>H8KMC8_SOLCM (tr|H8KMC8) Ribosomal RNA small subunit methyltransferase E
OS=Solitalea canadensis (strain ATCC 29591 / DSM 3403 /
NBRC 15130 / NCIMB 12057 / USAM 9D) GN=Solca_3723 PE=3
SV=1
Length = 234
Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 90/193 (46%), Gaps = 9/193 (4%)
Query: 49 PPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDM 108
P + ++ +E H +VLRL+N D V L +G GG + I + L
Sbjct: 7 PDISADYYQLNEEESKHCVRVLRLNNGDIVYLIDGVGGFYKTEITDAHPKRCTLHVLEKQ 66
Query: 109 EIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSSSISENRVDRLER 168
N LH+ T R +W +EK TE+G +TP++ +RS E + DRL +
Sbjct: 67 SDFGKRNFYLHIAIA-PTKNIERIEWFLEKATEIGIDEITPIICQRSER-KEIKTDRLNK 124
Query: 169 VILAASKQCQRLHEMIFKPPVDID-DLSHLIAQSKL--PLIATAKATPVLNALTSLEKQA 225
+I++A KQ + FKP +++ D I QSKL IA + S +
Sbjct: 125 IIVSAIKQSLKA----FKPKLNVSTDFKQFIVQSKLKSKYIAHCLENDRQSLRQSYKANE 180
Query: 226 SGLIIIGPEGDFT 238
L++IGPEGDFT
Sbjct: 181 EVLLLIGPEGDFT 193
>F3JIS6_PSESX (tr|F3JIS6) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas syringae pv. aceris str. M302273
GN=PSYAR_14437 PE=3 SV=1
Length = 239
Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 103/206 (50%), Gaps = 16/206 (7%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
L RFF+ET P S G + + +++VLR++ D +QLF+G G G + + +
Sbjct: 3 LSRFFTET-PLSLGEHELPEAQAHY-ISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKKR 60
Query: 100 IDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTER----- 154
+ V LT+ + L + G G +G R DW ++K TELG S +TP+++ER
Sbjct: 61 V-HVQLTE-SFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSERCEVRL 118
Query: 155 SSSISENRVDRLERVILAASKQCQRLHEMIFKPPVDIDD-LSHLIAQSKLPLIATAKATP 213
+E R +++ ++A +QC R + P+ + + + H A KL L P
Sbjct: 119 KDERAEKRQAHWQQIAISACEQCGRSVVPVIHAPMPLAEWIKHTEADLKLVL------HP 172
Query: 214 VLNALTSLEKQASGLIIIGPEGDFTE 239
V LTS +K AS +IGPEG +
Sbjct: 173 VAEPLTSHDKPASLAFLIGPEGGLND 198
>K2UB36_PSESY (tr|K2UB36) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas syringae pv. avellanae str. ISPaVe013
GN=Pav013_0636 PE=3 SV=1
Length = 239
Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 103/206 (50%), Gaps = 16/206 (7%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
L RFF+ET P S G + + +++VLR++ D +QLF+G G G + + +
Sbjct: 3 LSRFFTET-PLSLGEHELPEAQAHY-ISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKKR 60
Query: 100 IDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTER----- 154
+ V LT+ + L + G G +G R DW ++K TELG S +TP+++ER
Sbjct: 61 V-HVQLTE-SFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSERCEVRL 118
Query: 155 SSSISENRVDRLERVILAASKQCQRLHEMIFKPPVDIDD-LSHLIAQSKLPLIATAKATP 213
+E R +++ ++A +QC R + P+ + + + H A KL L P
Sbjct: 119 KDERAEKRQAHWQQIAISACEQCGRSVVPVIHAPMPLAEWIKHTEADLKLVL------HP 172
Query: 214 VLNALTSLEKQASGLIIIGPEGDFTE 239
V LTS +K AS +IGPEG +
Sbjct: 173 VAEPLTSHDKPASLAFLIGPEGGLND 198
>F3GDF9_PSESJ (tr|F3GDF9) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas syringae pv. pisi str. 1704B
GN=PSYPI_23327 PE=3 SV=1
Length = 239
Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 103/206 (50%), Gaps = 16/206 (7%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
L RFF+ET P S G + + +++VLR++ D +QLF+G G G + + +
Sbjct: 3 LSRFFTET-PLSLGEHELPEAQAHY-ISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKKR 60
Query: 100 IDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTER----- 154
+ V LT+ + L + G G +G R DW ++K TELG S +TP+++ER
Sbjct: 61 V-HVQLTE-SFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSERCEVRL 118
Query: 155 SSSISENRVDRLERVILAASKQCQRLHEMIFKPPVDIDD-LSHLIAQSKLPLIATAKATP 213
+E R +++ ++A +QC R + P+ + + + H A KL L P
Sbjct: 119 KDERAEKRQAHWQQIAISACEQCGRSVVPVIHAPMPLAEWIKHTEADLKLVL------HP 172
Query: 214 VLNALTSLEKQASGLIIIGPEGDFTE 239
V LTS +K AS +IGPEG +
Sbjct: 173 VAEPLTSHDKPASLAFLIGPEGGLND 198
>J2NCH6_9PSED (tr|J2NCH6) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas sp. GM18 GN=PMI21_03288 PE=3 SV=1
Length = 239
Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 99/206 (48%), Gaps = 16/206 (7%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
L RFF + P S G + + +++VLR++ D VQLF+G G G + + +
Sbjct: 3 LSRFFIDA-PLSTGEHELPEAQAHY-ISRVLRMAEGDAVQLFDGSGHEFRGTLMEVGKKR 60
Query: 100 IDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSS-SI 158
+ V D + L V G G +G R DW ++K TELG S +TP+ T+R +
Sbjct: 61 V--VVQIDESFTGQVESSLAVHLGQGLSRGERMDWAIQKATELGVSEITPIFTDRCEVRL 118
Query: 159 SENRVDR----LERVILAASKQCQRLHEMIFKPPVDIDD-LSHLIAQSKLPLIATAKATP 213
+ R D+ +V ++A +QC R + PP+ + D L A+ KL L P
Sbjct: 119 KDERADKRLMHWRQVAISACEQCGRSRVPVIHPPLLLADWLKQTAAELKLVL------HP 172
Query: 214 VLNALTSLEKQASGLIIIGPEGDFTE 239
V L S K +S +IGPEG ++
Sbjct: 173 VAEPLVSHAKPSSLAFLIGPEGGLSD 198
>J3DLG7_9PSED (tr|J3DLG7) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas sp. GM80 GN=PMI37_03538 PE=3 SV=1
Length = 239
Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 100/206 (48%), Gaps = 16/206 (7%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
L RFF + P S G + + +++VLR++ D VQLF+G G G + + +
Sbjct: 3 LSRFFIDA-PLSTGEHELPEAQAHY-ISRVLRMAEGDAVQLFDGSGHEFRGTLLEVGKKR 60
Query: 100 IDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSS-SI 158
+ D + + LH+ G G +G R DW ++K TELG + +TP+ ++R +
Sbjct: 61 V--TVQLDEQFAGQVESPLHIHLGQGLSRGERMDWAIQKATELGVNEITPIFSDRCEVRL 118
Query: 159 SENRVDR----LERVILAASKQCQRLHEMIFKPPVDIDD-LSHLIAQSKLPLIATAKATP 213
+ R D+ +V ++A +QC R + PPV + D + A+ KL L P
Sbjct: 119 KDERADKRLLHWRQVAISACEQCGRSRVPVIHPPVLLADWIKQTEAELKLVL------HP 172
Query: 214 VLNALTSLEKQASGLIIIGPEGDFTE 239
V L S K A+ +IGPEG T+
Sbjct: 173 VAEPLVSHAKPATLAFLIGPEGGLTD 198
>F3E0E0_9PSED (tr|F3E0E0) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas syringae pv. morsprunorum str. M302280
GN=PSYMP_20144 PE=3 SV=1
Length = 239
Score = 82.8 bits (203), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 102/206 (49%), Gaps = 16/206 (7%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
L RFF+ET P S G + + +++VLR++ D +QLF+G G G + + +
Sbjct: 3 LSRFFTET-PLSLGEHELPEAQAHY-ISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKKR 60
Query: 100 IDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTER----- 154
+ V LT+ + L + G G +G R DW ++K TELG S +TP+++ER
Sbjct: 61 VR-VQLTEC-FAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSERCEVRL 118
Query: 155 SSSISENRVDRLERVILAASKQCQRLHEMIFKPPVDIDDLSHLI-AQSKLPLIATAKATP 213
+E R +++ ++A +QC R + PP+ + D L A KL L P
Sbjct: 119 KDERAEKRQAHWQQIAISACEQCGRSVVPVIHPPMPLADWIKLTDADLKLVL------HP 172
Query: 214 VLNALTSLEKQASGLIIIGPEGDFTE 239
V LTS + AS +IGPEG +
Sbjct: 173 VAEPLTSHARPASLAFLIGPEGGLND 198
>C3K3H4_PSEFS (tr|C3K3H4) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas fluorescens (strain SBW25) GN=PFLU_5728
PE=3 SV=1
Length = 239
Score = 82.8 bits (203), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 105/206 (50%), Gaps = 16/206 (7%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
L RFF++T P S G+ + + +++VLR+ D VQLF+G G G + + +
Sbjct: 3 LSRFFTDT-PLSLGDHELPEAQAHY-ISRVLRMGEGDAVQLFDGSGQEFLGSLLEVGKKR 60
Query: 100 IDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSS-SI 158
+ V LT+ + + LH+ G G +G R DW ++K TELG +++TP+ ++R +
Sbjct: 61 VT-VQLTE-SVAGQAESPLHIHLGQGLSRGERMDWAIQKATELGVNAITPIFSDRCEVRL 118
Query: 159 SENRVDR----LERVILAASKQCQRLHEMIFKPPVDIDD-LSHLIAQSKLPLIATAKATP 213
+ R D+ +V ++A +QC R + PP+ + D L A KL L P
Sbjct: 119 KDERADKRLLHWRQVAISACEQCGRSTVPLIHPPLLLADWLKQTEADLKLVL------HP 172
Query: 214 VLNALTSLEKQASGLIIIGPEGDFTE 239
V + S K +S +IGPEG T+
Sbjct: 173 VAEPMVSHAKPSSLAFLIGPEGGLTD 198
>J2SN67_9PSED (tr|J2SN67) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas sp. GM50 GN=PMI30_01485 PE=3 SV=1
Length = 239
Score = 82.8 bits (203), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 99/206 (48%), Gaps = 16/206 (7%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
L RFF + P S G + + +++VLR++ D VQLF+G G G + + +
Sbjct: 3 LSRFFIDA-PLSTGEHELPEAQAHY-ISRVLRMAEGDAVQLFDGSGHEFRGTLAEVGKKR 60
Query: 100 IDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSS-SI 158
+ V D + L V G G +G R DW ++K TELG S +TP+ T+R +
Sbjct: 61 V--VVQIDESFAGQVESSLAVHLGQGLSRGERMDWAIQKATELGVSEITPIFTDRCEVRL 118
Query: 159 SENRVDR----LERVILAASKQCQRLHEMIFKPPVDIDD-LSHLIAQSKLPLIATAKATP 213
+ R D+ +V ++A +QC R + PP+ + D L A+ KL L P
Sbjct: 119 KDERADKRLMHWRQVAISACEQCGRSRVPVIHPPLLLADWLKQTEAELKLVL------HP 172
Query: 214 VLNALTSLEKQASGLIIIGPEGDFTE 239
V L S K A+ +IGPEG ++
Sbjct: 173 VAEPLVSHAKPATLAFLIGPEGGLSD 198
>K2U4K8_PSESY (tr|K2U4K8) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas syringae pv. avellanae str. ISPaVe037
GN=Pav037_0449 PE=3 SV=1
Length = 239
Score = 82.8 bits (203), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 103/206 (50%), Gaps = 16/206 (7%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
L RFF+ET P S G + + +++VLR++ D +QLF+G G G + + +
Sbjct: 3 LSRFFTET-PLSLGEHELPEAQAHY-ISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKKR 60
Query: 100 IDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTER----- 154
+ V LT+ + L + G G +G R DW ++K TELG S +TP+++ER
Sbjct: 61 V-HVQLTE-SFSGQVESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSERCEVRL 118
Query: 155 SSSISENRVDRLERVILAASKQCQRLHEMIFKPPVDIDD-LSHLIAQSKLPLIATAKATP 213
+E R +++ ++A +QC R + P+ + + + H A KL L P
Sbjct: 119 KDERAEKRQAHWQQIAISACEQCGRSVVPVIHAPMPLAEWIKHTEADLKLVL------HP 172
Query: 214 VLNALTSLEKQASGLIIIGPEGDFTE 239
V LTS +K AS +IGPEG +
Sbjct: 173 VAEPLTSHDKPASLAFLIGPEGGLND 198
>A0Q1R1_CLONN (tr|A0Q1R1) Ribosomal RNA small subunit methyltransferase E
OS=Clostridium novyi (strain NT) GN=NT01CX_0054 PE=3
SV=1
Length = 251
Score = 82.8 bits (203), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 102/199 (51%), Gaps = 19/199 (9%)
Query: 54 NVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPP 113
++ ++G++ H+ KVLRL D+V + + G G I +D++ ++ L ++EI
Sbjct: 14 DIAVIEGEDVKHIYKVLRLKEGDKVNINDCNGKEFLGTIDYIDKSKVEVKLLEELEINNE 73
Query: 114 PNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTER-SSSISE-----NRVDRLE 167
P +++++ G K + D +V+KCTELG +TP++T R +SSI++ ++DR
Sbjct: 74 PPIEVYLYQGLP--KASKMDLIVQKCTELGIREITPVVTGRVASSINDIKRESKKLDRWN 131
Query: 168 RVILAASKQCQRLHEMIFKPPV-DIDDLSHLIAQSK-LPLIATAKATPVLNALTSLEKQA 225
R+ A KQ +R P V DI ++ L Q K + LI + + K
Sbjct: 132 RIAFEACKQNKR----TLIPKVNDIMNMDELKEQLKEMDLIVVPYENAENYGIKQMIKNV 187
Query: 226 SGL-----IIIGPEGDFTE 239
+G IIIGPEG F +
Sbjct: 188 TGEVKKVGIIIGPEGGFEQ 206
>K4KNQ6_SIMAS (tr|K4KNQ6) Ribosomal RNA small subunit methyltransferase E
OS=Simiduia agarivorans (strain DSM 21679 / JCM 13881 /
BCRC 17597 / SA1) GN=M5M_13675 PE=3 SV=1
Length = 242
Score = 82.8 bits (203), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 102/208 (49%), Gaps = 18/208 (8%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
+PR F T S G+ V + D ++ VLR+ + +FNGKGG I + +
Sbjct: 3 IPRLFVNTELAS-GHTVALDADASRYLAGVLRMEAGRPLTVFNGKGGEYAATIASAAKKA 61
Query: 100 IDFV--ALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSS- 156
+ A E P L + G G KG R DW+++K TELG + +TPLLT RS
Sbjct: 62 VTLTIGAFDPTEKESP----LAIHLGIGLSKGDRFDWVIQKATELGVTHITPLLTSRSEV 117
Query: 157 SISENRVDR----LERVILAASKQCQRLHEMIFKPPVDIDDLSHLIAQSK-LPLIATAKA 211
+S R D+ +++ ++A +QCQR + P+ +D L +S+ L L+ +A
Sbjct: 118 KLSAERADKKIAHWQQIAVSACEQCQRNRLPVIAAPLKLDQW--LADRSEALKLVLHHRA 175
Query: 212 TPVLNALTSLEKQASGLIIIGPEGDFTE 239
AL++ S ++IGPEG ++
Sbjct: 176 D---RALSTHATPTSVAMVIGPEGGLSD 200
>Q39Q75_GEOMG (tr|Q39Q75) Ribosomal RNA small subunit methyltransferase E
OS=Geobacter metallireducens (strain GS-15 / ATCC 53774
/ DSM 7210) GN=rsmE PE=3 SV=1
Length = 263
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 97/195 (49%), Gaps = 13/195 (6%)
Query: 53 GNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIP 112
G VR++GD F HM KVLRL D RV+L +G G G I+ + R + VA+ + +
Sbjct: 15 GESVRIEGDLFRHMVKVLRLKIDTRVRLADGHGVECAGIIQEIGRDHL-TVAVEERHAVA 73
Query: 113 PPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERS-SSISENRVD----RLE 167
P L + G KG + + +++K TELG + V P +RS S I +R D R +
Sbjct: 74 PVGGSLRITLIQGLPKGEKMELILQKGTELGVNEVVPFQADRSVSRIPADRQDERLRRWQ 133
Query: 168 RVILAASKQCQRLHEMIFKPPVDID----DLSHLIAQSKLPLIATAKATPVLNALTSLEK 223
R+ A++Q RL + +D D H + KL L +AT + A+ +
Sbjct: 134 RIAAEAARQAGRLDIPTVQLAQGMDEAVRDTDHDL---KLLLWEEERATTLQGAINVRPR 190
Query: 224 QASGLIIIGPEGDFT 238
AS +I+GPEG T
Sbjct: 191 PASIAVIVGPEGGLT 205
>H1L5D6_GEOME (tr|H1L5D6) Ribosomal RNA small subunit methyltransferase E
OS=Geobacter metallireducens RCH3 GN=GeomeDRAFT_1233
PE=3 SV=1
Length = 263
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 97/195 (49%), Gaps = 13/195 (6%)
Query: 53 GNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIP 112
G VR++GD F HM KVLRL D RV+L +G G G I+ + R + VA+ + +
Sbjct: 15 GESVRIEGDLFRHMVKVLRLKIDTRVRLADGHGVECAGIIQEIGRDHL-TVAVEERHAVA 73
Query: 113 PPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERS-SSISENRVD----RLE 167
P L + G KG + + +++K TELG + V P +RS S I +R D R +
Sbjct: 74 PVGGSLRITLIQGLPKGEKMELILQKGTELGVNEVVPFQADRSVSRIPADRQDERLRRWQ 133
Query: 168 RVILAASKQCQRLHEMIFKPPVDID----DLSHLIAQSKLPLIATAKATPVLNALTSLEK 223
R+ A++Q RL + +D D H + KL L +AT + A+ +
Sbjct: 134 RIAAEAARQAGRLDIPTVQLAQGMDEAVRDTDHDL---KLLLWEEERATTLQGAINVRPR 190
Query: 224 QASGLIIIGPEGDFT 238
AS +I+GPEG T
Sbjct: 191 PASIAVIVGPEGGLT 205
>K0WLQ5_PSEFL (tr|K0WLQ5) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas fluorescens R124 GN=rsmE PE=3 SV=1
Length = 239
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 102/205 (49%), Gaps = 14/205 (6%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
L RFF + P S G + + +++VLR++ D VQLF+G G G + + +
Sbjct: 3 LSRFFIDA-PLSTGEHELPEAQAHY-ISRVLRMAEGDAVQLFDGSGHEFRGSLVEVGKKR 60
Query: 100 IDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSS-SI 158
+ V D ++ + L + G G +G R DW ++K TELG S +TP+ ++R +
Sbjct: 61 V--VVQIDEQLAGQIESPLQIHLGQGLSRGERMDWAIQKATELGVSEITPIFSDRCEVRL 118
Query: 159 SENRVDR----LERVILAASKQCQRLHEMIFKPPVDIDDLSHLIAQSKLPLIATAKATPV 214
+ R D+ +V ++A +QC R + PP+ + D AQ++L L+ PV
Sbjct: 119 KDERADKRLLHWRQVAISACEQCGRSRVPVIHPPLLLADWLKQ-AQAELKLV----LHPV 173
Query: 215 LNALTSLEKQASGLIIIGPEGDFTE 239
L S K A+ +IGPEG ++
Sbjct: 174 AEPLVSHAKPATLAFLIGPEGGLSD 198
>F3JA78_PSEAP (tr|F3JA78) Ribosomal RNA small subunit methyltransferase E
(Fragment) OS=Pseudomonas syringae pv. aptata str. DSM
50252 GN=PSYAP_32530 PE=3 SV=1
Length = 201
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 103/206 (50%), Gaps = 16/206 (7%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
+ RFF+ET P S G + + +++VLR++ D +QLF+G G G + + +
Sbjct: 1 MSRFFTET-PLSLGEHELPEAQAHY-ISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKKR 58
Query: 100 IDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTER----- 154
+ V LT+ + L + G G +G R DW ++K TELG S +TP+++ER
Sbjct: 59 V-HVQLTE-SFAGQVESGLRIHLGQGLSRGERMDWAIQKTTELGVSEITPIISERCEVRL 116
Query: 155 SSSISENRVDRLERVILAASKQCQRLHEMIFKPPVDIDD-LSHLIAQSKLPLIATAKATP 213
+E R +++ ++A +QC R + P+ + + + H A KL L P
Sbjct: 117 KDERAEKRQAHWQQIAISACEQCGRSVVPVIHAPMPLAEWIKHTEADLKLVL------HP 170
Query: 214 VLNALTSLEKQASGLIIIGPEGDFTE 239
V LTS +K AS +IGPEG +
Sbjct: 171 VAEPLTSHDKPASLAFLIGPEGGLND 196
>R5J9L3_9CLOT (tr|R5J9L3) Ribosomal RNA small subunit methyltransferase E
OS=Clostridium sp. CAG:1193 GN=BN475_00700 PE=4 SV=1
Length = 230
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 100/191 (52%), Gaps = 14/191 (7%)
Query: 56 VRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPPPN 115
+++ + H+ V+RL+ +D+++L N G + + I +++ + + EII
Sbjct: 6 LKLDKKDINHIINVMRLNVNDQIKLINN-GTIYDAIITKIEKNNVLY------EIIKKEE 58
Query: 116 TQ----LHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERS---SSISENRVDRLER 168
++ V +K + D+L++K TELGA + P+++ER+ + +++DR R
Sbjct: 59 SKSLKDYKVIIACSIIKEQKMDYLLQKATELGADEIIPIISERTIVKVKQASSKIDRWNR 118
Query: 169 VILAASKQCQRLHEMIFKPPVDIDDLSHLIAQSKLPLIATAKATPVLNALTSLEKQASGL 228
+I + +QC R+ I K + + +LS+L K+ K+ + L +K+ + +
Sbjct: 119 IIKESVEQCHRVSIPIIKDIISLKELSNLEYSLKILCNTNEKSKNIKKVLQDSKKRDTII 178
Query: 229 IIIGPEGDFTE 239
I++GPEG FT+
Sbjct: 179 IVVGPEGGFTD 189
>B9LZ50_GEOSF (tr|B9LZ50) Ribosomal RNA small subunit methyltransferase E
OS=Geobacter sp. (strain FRC-32) GN=Geob_0413 PE=3 SV=1
Length = 246
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 98/192 (51%), Gaps = 17/192 (8%)
Query: 58 VQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDF-VALTDMEIIPPPNT 116
+ G + HM KVLRL V L +G+GG EG I ++D T + V + ++
Sbjct: 18 ITGYLYRHMAKVLRLKQGTAVMLTDGEGGEYEGVIESIDSTSLRVRVVRRETLMVDDGGP 77
Query: 117 QLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSSS-----ISENRVDRLERVIL 171
Q+ ++ G KG + +++++KCTELGA+ + P RS + S RVDR +++
Sbjct: 78 QITIYQGLP--KGDKLEYILQKCTELGAAGIVPFAASRSIARISPQRSAGRVDRWQKIAA 135
Query: 172 AASKQCQRLHEMIFKPPVDI-DDLSHL--IAQS--KLPLIATAKATPVLNALTSLEKQAS 226
A++Q +R P V + DDLS + +AQ KL L KA + L+ L
Sbjct: 136 EAARQSRRAT----VPRVSLADDLSQVLQLAQHSVKLLLWEEEKANLLRETLSGLSAPND 191
Query: 227 GLIIIGPEGDFT 238
++IGPEG F+
Sbjct: 192 IGVLIGPEGGFS 203
>F0E2M5_PSEDT (tr|F0E2M5) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas sp. (strain TJI-51) GN=G1E_08788 PE=3
SV=1
Length = 239
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 93/177 (52%), Gaps = 14/177 (7%)
Query: 65 HMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPPPNTQLHVFSGF 124
++ +VLR++ D VQLF+G G G + + + + V+L D ++ LH+ G
Sbjct: 26 YVGRVLRMAPGDAVQLFDGSGQEYRGHLLEVGKKTVR-VSL-DQAFAGQADSPLHIHLGQ 83
Query: 125 GTLKGGRADWLVEKCTELGASSVTPLLTER-----SSSISENRVDRLERVILAASKQCQR 179
G +G R DW ++K TELGA+++TP+++ER ++ R+ +V ++A +QC R
Sbjct: 84 GLSRGERMDWAIQKATELGANAITPIISERCEVRLKDERADKRLAHWRQVAISACEQCGR 143
Query: 180 LHEMIFKPPVDIDD-LSHLIAQSKLPLIATAKATPVLNALTSLEKQASGLIIIGPEG 235
PP + + LS A+ KL L PV LTS + A+ +IGPEG
Sbjct: 144 STLPAINPPTTLAEWLSSTHAELKLVL------HPVAEPLTSHARPATLAFLIGPEG 194
>B1J2X8_PSEPW (tr|B1J2X8) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas putida (strain W619) GN=PputW619_0479
PE=3 SV=1
Length = 239
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 94/181 (51%), Gaps = 14/181 (7%)
Query: 65 HMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPPPNTQLHVFSGF 124
++ +VLR++ D VQLF+G G G + + + + V+L D + + LH+ G
Sbjct: 26 YIGRVLRMAPGDAVQLFDGSGQEYLGQLLEVGKKTVR-VSL-DQAVAGQAESPLHIHLGQ 83
Query: 125 GTLKGGRADWLVEKCTELGASSVTPLLTER-----SSSISENRVDRLERVILAASKQCQR 179
G +G R DW ++K TELGA+ +TP+++ER ++ R+ +V ++A +QC R
Sbjct: 84 GLSRGERMDWAIQKATELGANEITPIVSERCEVRLKDERADKRLAHWRQVAISACEQCGR 143
Query: 180 LHEMIFKPPVDIDD-LSHLIAQSKLPLIATAKATPVLNALTSLEKQASGLIIIGPEGDFT 238
I + PV + D + A KL L PV LTS +K A +IGPEG +
Sbjct: 144 SILPIIRAPVTLGDWIKGSDADLKLVL------HPVAEPLTSHDKPARLAFLIGPEGGLS 197
Query: 239 E 239
E
Sbjct: 198 E 198
>A4C941_9GAMM (tr|A4C941) Ribosomal RNA small subunit methyltransferase E
OS=Pseudoalteromonas tunicata D2 GN=PTD2_08679 PE=3 SV=1
Length = 243
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 103/196 (52%), Gaps = 18/196 (9%)
Query: 53 GNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGID--FVALTDMEI 110
G ++++ D H+ +VLR+S D+V LFNG+GG + + + G++ + + ++
Sbjct: 15 GQILQLDDDAAGHIGRVLRMSIGDKVCLFNGQGGQFLAELTEVSKKGVNVQIESFEEHDV 74
Query: 111 IPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTER-----SSSISENRVDR 165
P L + G G +G + D+ ++K ELG + +TPL TER S E + +
Sbjct: 75 ESP----LKIHLGQGISRGDKMDFTIQKSVELGVTEITPLFTERCGVKLSGDRLEKKHQQ 130
Query: 166 LERVILAASKQCQRLHEMIFKPPVDIDD-LSHLIAQSKLPLIATAKATPVLNALTSLEKQ 224
+++ +AA++Q R + PP+ ++ LS + KL L A+ +++ ++ K
Sbjct: 131 WQKIAIAAAEQSGRNFVTVIHPPIKLEQWLSQQSDELKLTLHPRAE-----HSIKTITKP 185
Query: 225 ASGL-IIIGPEGDFTE 239
GL I+GPEG FT+
Sbjct: 186 TEGLRFIVGPEGGFTD 201
>M4K5U0_9PSED (tr|M4K5U0) 16S ribosomal RNA methyltransferase RsmE OS=Pseudomonas
poae RE*1-1-14 GN=H045_19070 PE=4 SV=1
Length = 239
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 102/206 (49%), Gaps = 16/206 (7%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
L RFF++ P S G + + +++VLR+ D VQLF+G G G + ++ +
Sbjct: 3 LSRFFTDA-PLSLGEHELPEAQAHY-ISRVLRMVEGDAVQLFDGSGEEFLGSLLDVGKKR 60
Query: 100 IDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTER----- 154
+ V LT+ + LH+ G G +G R DW ++K TELG +++TP+ +ER
Sbjct: 61 VT-VQLTE-SFAGQAESPLHIHLGQGLSRGERMDWAIQKATELGVNAITPIFSERCEVRL 118
Query: 155 SSSISENRVDRLERVILAASKQCQRLHEMIFKPPVDIDD-LSHLIAQSKLPLIATAKATP 213
++ R+ +V ++A +QC R + PP+ + D L A KL L P
Sbjct: 119 KDERADKRLQHWRQVAISACEQCGRSTVPVIHPPLLLADWLKQTEADLKLVL------HP 172
Query: 214 VLNALTSLEKQASGLIIIGPEGDFTE 239
V + S K A+ +IGPEG T+
Sbjct: 173 VAEPMVSHAKPANLAFLIGPEGGLTD 198
>L7HG41_PSEFL (tr|L7HG41) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas fluorescens BRIP34879 GN=A986_13387 PE=3
SV=1
Length = 239
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 102/206 (49%), Gaps = 16/206 (7%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
L RFF++ P S G + + +++VLR+ D VQLF+G G G + ++ +
Sbjct: 3 LSRFFTDA-PLSLGEHELPEAQAHY-ISRVLRMVEGDAVQLFDGSGEEFLGSLLDVGKKR 60
Query: 100 IDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTER----- 154
+ V LT+ + LH+ G G +G R DW ++K TELG +++TP+ +ER
Sbjct: 61 VT-VQLTE-SFAGQAESPLHIHLGQGLSRGERMDWAIQKATELGVNAITPIFSERCEVRL 118
Query: 155 SSSISENRVDRLERVILAASKQCQRLHEMIFKPPVDIDD-LSHLIAQSKLPLIATAKATP 213
++ R+ +V ++A +QC R + PP+ + D L A KL L P
Sbjct: 119 KDERADKRLQHWRQVAISACEQCGRSTVPVIHPPLLLADWLKQTEADLKLVL------HP 172
Query: 214 VLNALTSLEKQASGLIIIGPEGDFTE 239
V + S K A+ +IGPEG T+
Sbjct: 173 VAEPMVSHAKPANLAFLIGPEGGLTD 198
>F3JXQ5_PSESZ (tr|F3JXQ5) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas syringae pv. tabaci str. ATCC 11528
GN=PSYTB_08081 PE=3 SV=1
Length = 239
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 102/206 (49%), Gaps = 16/206 (7%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
L RFF+E P S G + + +++VLR++ D +QLF+G G G + + +
Sbjct: 3 LSRFFTEA-PLSLGEHELPEAQAHY-ISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKKR 60
Query: 100 IDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTER----- 154
+ V LT+ + L + G G +G R DW ++K TELG S +TP+++ER
Sbjct: 61 V-HVQLTE-SFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSERCEVRL 118
Query: 155 SSSISENRVDRLERVILAASKQCQRLHEMIFKPPVDIDD-LSHLIAQSKLPLIATAKATP 213
+E R +++ ++A +QC R + P+ + + + H A KL L P
Sbjct: 119 KDERAEKRQAHWQQIAISACEQCGRSVVPVIHAPMPLAEWIKHTEADLKLVL------HP 172
Query: 214 VLNALTSLEKQASGLIIIGPEGDFTE 239
V LTS +K AS +IGPEG +
Sbjct: 173 VAEPLTSHDKPASLAFLIGPEGGLND 198
>F3E9F1_PSESL (tr|F3E9F1) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas syringae pv. lachrymans str. M301315
GN=PLA107_06621 PE=3 SV=1
Length = 239
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 102/206 (49%), Gaps = 16/206 (7%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
L RFF+E P S G + + +++VLR++ D +QLF+G G G + + +
Sbjct: 3 LSRFFTEA-PLSLGEHELPEAQAHY-ISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKKR 60
Query: 100 IDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTER----- 154
+ V LT+ + L + G G +G R DW ++K TELG S +TP+++ER
Sbjct: 61 V-HVQLTE-SFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSERCEVRL 118
Query: 155 SSSISENRVDRLERVILAASKQCQRLHEMIFKPPVDIDD-LSHLIAQSKLPLIATAKATP 213
+E R +++ ++A +QC R + P+ + + + H A KL L P
Sbjct: 119 KDERAEKRQAHWQQIAISACEQCGRSVVPVIHAPMPLAEWIKHTEADLKLVL------HP 172
Query: 214 VLNALTSLEKQASGLIIIGPEGDFTE 239
V LTS +K AS +IGPEG +
Sbjct: 173 VAEPLTSHDKPASLAFLIGPEGGLND 198
>E7PI03_PSESG (tr|E7PI03) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas syringae pv. glycinea str. race 4
GN=Pgy4_01000 PE=3 SV=1
Length = 239
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 102/206 (49%), Gaps = 16/206 (7%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
L RFF+E P S G + + +++VLR++ D +QLF+G G G + + +
Sbjct: 3 LSRFFTEA-PLSLGEHELPEAQAHY-ISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKKR 60
Query: 100 IDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTER----- 154
+ V LT+ + L + G G +G R DW ++K TELG S +TP+++ER
Sbjct: 61 V-HVQLTE-SFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSERCEVRL 118
Query: 155 SSSISENRVDRLERVILAASKQCQRLHEMIFKPPVDIDD-LSHLIAQSKLPLIATAKATP 213
+E R +++ ++A +QC R + P+ + + + H A KL L P
Sbjct: 119 KDERAEKRQAHWQQIAISACEQCGRSVVPVIHAPMPLAEWIKHTEADLKLVL------HP 172
Query: 214 VLNALTSLEKQASGLIIIGPEGDFTE 239
V LTS +K AS +IGPEG +
Sbjct: 173 VAEPLTSHDKPASLAFLIGPEGGLND 198
>E7PBS6_PSESG (tr|E7PBS6) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas syringae pv. glycinea str. B076
GN=PsgB076_24484 PE=3 SV=1
Length = 239
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 102/206 (49%), Gaps = 16/206 (7%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
L RFF+E P S G + + +++VLR++ D +QLF+G G G + + +
Sbjct: 3 LSRFFTEA-PLSLGEHELPEAQAHY-ISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKKR 60
Query: 100 IDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTER----- 154
+ V LT+ + L + G G +G R DW ++K TELG S +TP+++ER
Sbjct: 61 V-HVQLTE-SFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSERCEVRL 118
Query: 155 SSSISENRVDRLERVILAASKQCQRLHEMIFKPPVDIDD-LSHLIAQSKLPLIATAKATP 213
+E R +++ ++A +QC R + P+ + + + H A KL L P
Sbjct: 119 KDERAEKRQAHWQQIAISACEQCGRSVVPVIHAPMPLAEWIKHTEADLKLVL------HP 172
Query: 214 VLNALTSLEKQASGLIIIGPEGDFTE 239
V LTS +K AS +IGPEG +
Sbjct: 173 VAEPLTSHDKPASLAFLIGPEGGLND 198
>Q1NJW9_9DELT (tr|Q1NJW9) Ribosomal RNA small subunit methyltransferase E
OS=delta proteobacterium MLMS-1 GN=MldDRAFT_2260 PE=3
SV=1
Length = 241
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 97/201 (48%), Gaps = 8/201 (3%)
Query: 42 RFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGID 101
RFF E + + +QG + H+ KVLRL N D V+LF+G G + + I ++
Sbjct: 3 RFFIEPTAITDRQAI-LQGADARHLRKVLRLQNGDEVELFSGDGLVHQARISGGAHDRVE 61
Query: 102 FVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSS--SIS 159
L + PP + +LH+ G LK + D +++KCTELG +++ P L+ + +
Sbjct: 62 LAILASNQ-RPPADLRLHL--GQAMLKSKKMDLVIQKCTELGVAAIHPYLSHHTKVPAPE 118
Query: 160 ENRVDRLERVILAASKQCQRLHEMIFKPPVDIDDLSHLIAQSKLPLIA--TAKATPVLNA 217
++ R +++I + KQC + + +P + A L L+ A P+
Sbjct: 119 PAKIQRWQKIIRESCKQCNQPWPPVCRPEASFEQALAAGADCDLRLLCWEDPTAAPLREV 178
Query: 218 LTSLEKQASGLIIIGPEGDFT 238
L S +++IGPEG F+
Sbjct: 179 ADRLTTPRSLMVLIGPEGGFS 199
>Q3K5C9_PSEPF (tr|Q3K5C9) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas fluorescens (strain Pf0-1) GN=Pfl01_5288
PE=3 SV=1
Length = 239
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 100/206 (48%), Gaps = 16/206 (7%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
L RFF + P S G + + +++VLR++ D VQLF+G G G + + +
Sbjct: 3 LSRFFIDA-PLSTGEHELPEAQAHY-ISRVLRMAEGDAVQLFDGSGHEFRGSLVEVGKKR 60
Query: 100 IDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSS-SI 158
+ V D + + L + G G +G R DW ++K TELG + +TP+ +ER +
Sbjct: 61 V--VVQIDEQFAGQVESPLKIHLGQGLSRGERMDWAIQKATELGVTEITPIFSERCEVRL 118
Query: 159 SENRVDR----LERVILAASKQCQRLHEMIFKPPVDIDD-LSHLIAQSKLPLIATAKATP 213
+ R D+ +V ++A +QC R + PPV + D L A+ KL L P
Sbjct: 119 KDERADKRLLHWRQVAISACEQCGRSRVPVIHPPVLLADWLKQTEAELKLVL------HP 172
Query: 214 VLNALTSLEKQASGLIIIGPEGDFTE 239
V L S K ++ +IGPEG ++
Sbjct: 173 VAEPLVSHAKPSTLAFLIGPEGGLSD 198
>N2JEV2_9PSED (tr|N2JEV2) RsmE family RNA methyltransferase OS=Pseudomonas sp.
HPB0071 GN=HMPREF1487_05168 PE=4 SV=1
Length = 239
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 105/209 (50%), Gaps = 22/209 (10%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
L RF+ + LP S G + + + M +VLRL++ VQLF+G G +G + + +
Sbjct: 3 LSRFYVD-LPLSLGQQILPEAQAHY-MGRVLRLTSGTAVQLFDGSGYEYKGVLTEIGKKS 60
Query: 100 --IDFVA-LTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSS 156
+D + ME + L V G G +G R DW ++K TELGA+ +TP++TER
Sbjct: 61 AHVDIQERFSGME-----ESTLRVHLGQGLSRGERMDWAIQKATELGAAEITPVMTERCE 115
Query: 157 -SISENRVDR----LERVILAASKQCQRLHEMIFKPPVDIDD-LSHLIAQSKLPLIATAK 210
+ + R D+ ++V ++A +QC R I PV + + L + A KL L
Sbjct: 116 VRLKDERADKRLLHWKQVAISACEQCGRSTLPIIHAPVTLAEWLGKVEADLKLVL----- 170
Query: 211 ATPVLNALTSLEKQASGLIIIGPEGDFTE 239
PV LTS +S +IGPEG T+
Sbjct: 171 -HPVAEPLTSHTPPSSLAFLIGPEGGLTD 198
>A3UG06_9RHOB (tr|A3UG06) Ribosomal RNA small subunit methyltransferase E
OS=Oceanicaulis sp. HTCC2633 GN=OA2633_13950 PE=3 SV=1
Length = 254
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 100/213 (46%), Gaps = 21/213 (9%)
Query: 41 PRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGI 100
PR + + P G V+ + D+ ++ V+R D V+LFNG+ G + + DR
Sbjct: 5 PRLYIDA-PLEAGAVLDLDRDQAHYLVNVMRRKPGDGVRLFNGRDGEWRAEVASADRKRA 63
Query: 101 DF-VALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSSSIS 159
+ P+ L+ F +K R D++VEK TELG +S+TP++T+R+ S
Sbjct: 64 SLQIVQQRRSQSATPDMALY----FAPVKKARTDFIVEKATELGVASITPVITQRTQS-E 118
Query: 160 ENRVDRLERVILAASKQCQRLHEMIFKPPVDIDDLSHLIAQSKLPLIAT----------- 208
R DR++ + AS+Q +RL + PV + + +++ + A
Sbjct: 119 RVRTDRMQALTREASEQTERLDLPVIHEPVSLTQMLKGWDEARTLMFADESGDSQTEPWG 178
Query: 209 ---AKATPVLNALTSLEKQASGLIIIGPEGDFT 238
+A P+ AL E+ +++GPEG F+
Sbjct: 179 GEHGRARPMAEALAGRERGGKWAMLVGPEGGFS 211
>A4VRG7_PSEU5 (tr|A4VRG7) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas stutzeri (strain A1501) GN=PST_3945 PE=3
SV=1
Length = 238
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 98/205 (47%), Gaps = 15/205 (7%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
L RFF + P S G + + + +VLRLS VQLF+G G G + + +
Sbjct: 3 LSRFFIDA-PLSLGQHALPEASAHY-IGRVLRLSAGSAVQLFDGSGAEYRGELLEVGKKS 60
Query: 100 IDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSS-SI 158
+ + +P ++H+ G G +G R DW ++K TELG S +TPL++ER +
Sbjct: 61 VSVELYERLAGMPESPLRIHL--GQGLSRGERMDWAIQKATELGVSEITPLISERCEVRL 118
Query: 159 SENRVDR----LERVILAASKQCQRLHEMIFKPPVDIDDLSHLIAQSKLPLIATAKATPV 214
++ R D+ ++ ++A +QC R I PV + D + A KL L PV
Sbjct: 119 NDERADKRLAHWRQIAISACEQCGRSVLPIIHAPVTLRDWLDVEADLKLVL------HPV 172
Query: 215 LNALTSLEKQASGLIIIGPEGDFTE 239
L S K S +IGPEG ++
Sbjct: 173 AEPLASHAKPQSLAFLIGPEGGLSD 197
>J2Y893_9PSED (tr|J2Y893) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas sp. GM84 GN=PMI38_00539 PE=3 SV=1
Length = 240
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 93/180 (51%), Gaps = 12/180 (6%)
Query: 65 HMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPPPNTQLHVFSGF 124
++ +VLR++ D VQLF+G G G + + + + V+L D + ++ LH+ G
Sbjct: 26 YIGRVLRMAPGDAVQLFDGSGQEYLGQLLEVGKKTVR-VSL-DQALPGQADSPLHIHLGQ 83
Query: 125 GTLKGGRADWLVEKCTELGASSVTPLLTER-----SSSISENRVDRLERVILAASKQCQR 179
G +G R DW ++K TELG + +TP+++ER ++ R+ +V ++A +QC R
Sbjct: 84 GLSRGERMDWAIQKATELGVNEITPIVSERCEVRLKDERADKRLAHWRQVAISACEQCGR 143
Query: 180 LHEMIFKPPVDIDDLSHLIAQSKLPLIATAKATPVLNALTSLEKQASGLIIIGPEGDFTE 239
+ PPV L+ I S+ L PV LTS EK A +IGPEG +E
Sbjct: 144 STLPVIHPPV---TLAEWIKGSEADLKLVLH--PVAEPLTSHEKPARLAFLIGPEGGLSE 198
>Q48PC2_PSE14 (tr|Q48PC2) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas syringae pv. phaseolicola (strain 1448A /
Race 6) GN=PSPPH_0444 PE=3 SV=1
Length = 239
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 102/206 (49%), Gaps = 16/206 (7%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
L RFF+E P S G + + +++VLR++ D +QLF+G G G + + +
Sbjct: 3 LSRFFTEA-PLSLGEHELPEAQTHY-ISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKKR 60
Query: 100 IDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTER----- 154
+ V LT+ + L + G G +G R DW ++K TELG S +TP+++ER
Sbjct: 61 V-HVQLTE-SFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSERCEVRL 118
Query: 155 SSSISENRVDRLERVILAASKQCQRLHEMIFKPPVDIDD-LSHLIAQSKLPLIATAKATP 213
+E R +++ ++A +QC R + P+ + + + H A KL L P
Sbjct: 119 KDERAEKRQAHWQQIAISACEQCGRSVVPVIHAPMPLAEWIKHTEADLKLVL------HP 172
Query: 214 VLNALTSLEKQASGLIIIGPEGDFTE 239
V LTS +K AS +IGPEG +
Sbjct: 173 VAEPLTSHDKPASLAFLIGPEGGLND 198
>I4K9J5_PSEFL (tr|I4K9J5) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas fluorescens SS101 GN=PflSS101_5076 PE=3
SV=1
Length = 239
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 103/206 (50%), Gaps = 16/206 (7%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
L RFF++ P S G+ + + +++VLR+ D VQLF+G G G + + +
Sbjct: 3 LSRFFTDA-PLSLGDHELPEAQAHY-ISRVLRMGEGDAVQLFDGSGQEFRGTLLEVGKKR 60
Query: 100 IDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSS-SI 158
+ V LT+ + LH+ G G +G R DW ++K TELG +++TP+ ++R +
Sbjct: 61 VT-VQLTE-SFAGQAESPLHIHLGQGLSRGERMDWAIQKATELGVNAITPIFSDRCEVRL 118
Query: 159 SENRVDR----LERVILAASKQCQRLHEMIFKPPVDIDD-LSHLIAQSKLPLIATAKATP 213
+ R D+ +V ++A +QC R + PP+ + D L A KL L P
Sbjct: 119 KDERADKRLLHWRQVAISACEQCGRSTVPVIHPPLLLADWLKQTEADLKLVL------HP 172
Query: 214 VLNALTSLEKQASGLIIIGPEGDFTE 239
V + S K +S +IGPEG T+
Sbjct: 173 VAEPMISHAKPSSLAFLIGPEGGLTD 198
>I4CNB7_PSEST (tr|I4CNB7) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas stutzeri CCUG 29243 GN=A458_01580 PE=3
SV=1
Length = 238
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 90/180 (50%), Gaps = 13/180 (7%)
Query: 65 HMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPPPNTQLHVFSGF 124
++++VLRLS VQLF+G G G + + + + + +P Q H+ G
Sbjct: 26 YISRVLRLSAGSAVQLFDGSGSEFRGELLEVGKKSVTVELHERLTGMPESPLQTHL--GQ 83
Query: 125 GTLKGGRADWLVEKCTELGASSVTPLLTER-----SSSISENRVDRLERVILAASKQCQR 179
G +G R DW ++K TELG + +TP+++ER + ++ R+ ++ ++A +QC R
Sbjct: 84 GLSRGERMDWAIQKATELGVTQITPIISERCEVRLNDERADKRLAHWRQIAISACEQCGR 143
Query: 180 LHEMIFKPPVDIDDLSHLIAQSKLPLIATAKATPVLNALTSLEKQASGLIIIGPEGDFTE 239
+ PP+ + D + A KL L PV LTS + + +IGPEG +E
Sbjct: 144 SVLPVIHPPMSLSDWLPVEADLKLVL------HPVAAPLTSHARPQTLAFLIGPEGGLSE 197
>J3D5I5_9PSED (tr|J3D5I5) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas sp. GM79 GN=PMI36_04926 PE=3 SV=1
Length = 239
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 99/206 (48%), Gaps = 16/206 (7%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
L RFF + P S G + + +++VLR++ D VQLF+G G G + + +
Sbjct: 3 LSRFFIDA-PLSTGEHELPEAQAHY-ISRVLRMAEGDAVQLFDGSGHEFRGTLAEVGKKR 60
Query: 100 IDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSS-SI 158
+ V D + L V G G +G R DW ++K TELG S +TP+ T+R +
Sbjct: 61 V--VVQIDESFAGQVESSLAVHLGQGLSRGERMDWAIQKATELGVSEITPIFTDRCEVRL 118
Query: 159 SENRVDR----LERVILAASKQCQRLHEMIFKPPVDIDD-LSHLIAQSKLPLIATAKATP 213
+ R D+ +V ++A +QC R + PP+ + D L A+ KL L P
Sbjct: 119 KDERADKRLMHWRQVAISACEQCGRSSVPVIHPPLLLADWLKQTQAELKLVL------HP 172
Query: 214 VLNALTSLEKQASGLIIIGPEGDFTE 239
+ L S K A+ +IGPEG ++
Sbjct: 173 MAEPLVSHAKPATLAFLIGPEGGLSD 198
>K6ALR0_PSEVI (tr|K6ALR0) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas viridiflava UASWS0038 GN=AAI_04319 PE=3
SV=1
Length = 239
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 102/210 (48%), Gaps = 24/210 (11%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCI----RNM 95
L RFF++T P S G + + +++VLR++ D +QLF+G G G + +
Sbjct: 3 LSRFFTDT-PLSLGEHELPEAQAHY-ISRVLRMTEGDALQLFDGSGSEFRGTLLEVGKKR 60
Query: 96 DRTGIDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTER- 154
R +D +E + L + G G +G R DW ++K TELG S +TP+++ER
Sbjct: 61 VRVQLDECFAGQVE------SGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSERC 114
Query: 155 ----SSSISENRVDRLERVILAASKQCQRLHEMIFKPPVDIDD-LSHLIAQSKLPLIATA 209
+E R +++ ++A +QC R + PP+ + + L A KL L
Sbjct: 115 EVRLKDERAEKRQMHWQQIAVSACEQCGRSVVPVIHPPMPLAEWLKQTEADLKLVL---- 170
Query: 210 KATPVLNALTSLEKQASGLIIIGPEGDFTE 239
PV LTS EK AS +IGPEG +
Sbjct: 171 --HPVAEPLTSHEKPASLAFLIGPEGGLND 198
>F5Y327_RAMTT (tr|F5Y327) Ribosomal RNA small subunit methyltransferase E
OS=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM
14655 / LMG 21543 / TTB310) GN=Rta_37920 PE=3 SV=1
Length = 240
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 94/205 (45%), Gaps = 13/205 (6%)
Query: 39 GLPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRT 98
G+PRF P + G ++ G +VLRL D + LF+G+GG + I M R+
Sbjct: 4 GMPRFHCPE-PLAAGPLLLPPGAA--RHAQVLRLQPGDAITLFDGRGGQWQAVIERMGRS 60
Query: 99 GIDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERS--- 155
+ + + ++H+ G + R DWLVEK +ELGA+SV PLL ERS
Sbjct: 61 EVAVLVGAHQAVEREAPREVHLAVGIPANE--RMDWLVEKASELGAASVQPLLAERSVLK 118
Query: 156 --SSISENRVDRLERVILAASKQCQRLHEMIFKPPVDIDDLSHLIAQSKLPLIATAKATP 213
+ + + V +AA +QC R + P ++D A + L++ A P
Sbjct: 119 PNGERAAKKQAHWQAVAVAACEQCGRNRVPVVHAPAALEDWQP-AAGGRRWLLSLADGAP 177
Query: 214 VLNALTSLEKQASGLIIIGPEGDFT 238
A T+L ++ GPEG T
Sbjct: 178 --GAATALSAPGPAWVLSGPEGGLT 200
>F0SVE6_SYNGF (tr|F0SVE6) Ribosomal RNA small subunit methyltransferase E
OS=Syntrophobotulus glycolicus (strain DSM 8271 /
FlGlyR) GN=Sgly_2434 PE=3 SV=1
Length = 245
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 94/187 (50%), Gaps = 9/187 (4%)
Query: 58 VQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPPPNTQ 117
+ G+E H+T+VLRL + + F+ G L G IR +++ V IP +
Sbjct: 16 IDGEELHHLTRVLRLGPGEEILGFDHSGRLWRGAIREINKE--QAVCSVIRAEIPETEAK 73
Query: 118 LHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERS-----SSISENRVDRLERVILA 172
+ V+ G KG + + +++K TELG + + PL T RS + +E RVDR ++
Sbjct: 74 VKVYLIVGLSKGEKMELVIQKGTELGMTGLIPLRTRRSVMKLEGTKAEERVDRWRKIAGE 133
Query: 173 ASKQCQRLHEMIFKPPVDIDDL-SHLIAQSKLPLIATAKATPVLNA-LTSLEKQASGLII 230
A KQC R+ + P +D DL ++L A ++ + + T L A L S + +I
Sbjct: 134 AVKQCGRVIQPAVAPVLDWQDLPAYLPADTQWLIPFEGEKTVSLKACLKSFDPSLPMALI 193
Query: 231 IGPEGDF 237
IGPEG F
Sbjct: 194 IGPEGGF 200
>I4L5D5_9PSED (tr|I4L5D5) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas synxantha BG33R GN=PseBG33_5238 PE=3 SV=1
Length = 239
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 102/206 (49%), Gaps = 16/206 (7%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
L RFF++T P S G+ + + +++VLR+ D VQLF+G G G + + +
Sbjct: 3 LSRFFTDT-PLSLGDHELPEAQAHY-ISRVLRMGEGDAVQLFDGSGQEFSGTLLEVGKKR 60
Query: 100 IDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSS-SI 158
+ V LT + LH+ G G +G R DW ++K TELG +++TP+ +ER +
Sbjct: 61 VT-VQLT-RSFAGQDESPLHIHLGQGLSRGERMDWAIQKATELGVNAITPIFSERCEVRL 118
Query: 159 SENRVDR----LERVILAASKQCQRLHEMIFKPPVDIDD-LSHLIAQSKLPLIATAKATP 213
+ R D+ +V ++A +QC R + PV + D L A KL L P
Sbjct: 119 KDERADKRLLHWRQVAISACEQCGRSTVPVIHAPVLLADWLKQTEADLKLVL------HP 172
Query: 214 VLNALTSLEKQASGLIIIGPEGDFTE 239
V + S K +S +IGPEG T+
Sbjct: 173 VAEPMISHAKPSSLAFLIGPEGGLTD 198
>R5NT14_9PORP (tr|R5NT14) Ribosomal RNA small subunit methyltransferase E
OS=Odoribacter sp. CAG:788 GN=BN783_02608 PE=4 SV=1
Length = 234
Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 88/193 (45%), Gaps = 7/193 (3%)
Query: 49 PPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDM 108
P +G+V + +E H +VLRL D V L +G+GG G I G + +
Sbjct: 7 PDIEGDVYMLNPEESKHCVRVLRLEKGDEVALVDGRGGYYSGIITAAAIKGCKIEIVHKI 66
Query: 109 EIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSSSISENRVDRLER 168
E + +LH+ T R +W++EKCTE+G T L T RS E + +RLE+
Sbjct: 67 EAYGKRSFRLHIAIA-PTKNIDRIEWMLEKCTEIGTEEFTMLRTARSER-KEVKAERLEK 124
Query: 169 VILAASKQCQRLHEMIFKPPVDIDDLSHLIAQSK--LPLIATAKATPVLNALTSLEKQAS 226
VI++A KQ + + P + D H IA K IA
Sbjct: 125 VIVSAVKQSLKAYVPGLNP---MTDFKHFIASCKEGQRFIAHCNEGEKRRLDEVYIPGED 181
Query: 227 GLIIIGPEGDFTE 239
+I+IGPEGDF++
Sbjct: 182 AVILIGPEGDFSD 194
>D8TKL9_VOLCA (tr|D8TKL9) Putative uncharacterized protein (Fragment) OS=Volvox
carteri GN=VOLCADRAFT_56392 PE=4 SV=1
Length = 187
Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/128 (42%), Positives = 70/128 (54%), Gaps = 15/128 (11%)
Query: 126 TLKGGRADWLVEKCTELGASSVTPLLTERS---------SSISENRVD--RLERVILAAS 174
TLKGGRA+WLVEK TELGA + PL+TERS ++ NR+ RLERV +AA+
Sbjct: 10 TLKGGRAEWLVEKLTELGAFMMIPLVTERSQVGMTGRGCTAFFPNRISPGRLERVAIAAT 69
Query: 175 KQCQRLHEMIFKPPVDIDD-LSHLIAQSKLPLIATAKATPVLNALTSLEKQASG---LII 230
KQ R H + PP + D L LIA A A P+ ++ G ++
Sbjct: 70 KQSLRPHVLHLAPPTALADVLPDDGGGESFCLIAVAGAPPLATRGCDAAGESEGPLRVLF 129
Query: 231 IGPEGDFT 238
IGPEGDFT
Sbjct: 130 IGPEGDFT 137
>A3ZM62_9PLAN (tr|A3ZM62) Ribosomal RNA small subunit methyltransferase E
OS=Blastopirellula marina DSM 3645 GN=DSM3645_10607 PE=3
SV=1
Length = 240
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 90/198 (45%), Gaps = 6/198 (3%)
Query: 42 RFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGID 101
RFF E P G+ V + G E H+ V+R +V LF+ G I + R
Sbjct: 4 RFFLEA--PITGDTVEIDGPEAHHLLHVMRAKIGAQVTLFDDSGAQFAAEIIAVGRKSAT 61
Query: 102 FVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSSSI-SE 160
+ E+ L + + KG R WLVEKC ELG + +TPL TERS S+ E
Sbjct: 62 ARVVARQEVSRELPISLTIAAALP--KGDRQRWLVEKCVELGVTDLTPLDTERSVSLKKE 119
Query: 161 NRVDRLERVILAASKQCQRLHEMIFKPPVDIDDLSHLIAQSKLPLIATAKATPVLNALTS 220
+D+L ++ ASKQC+R M + + + S + LIA A + L
Sbjct: 120 KSLDKLRGYVIDASKQCERNRLMRIADSAALPAFWNHASLSAVRLIADPDACESVADLLP 179
Query: 221 LEKQASGLIIIGPEGDFT 238
E ++ IGPEG F+
Sbjct: 180 AEP-TDVIVAIGPEGGFS 196
>L7WBU3_NONDD (tr|L7WBU3) Ribosomal RNA small subunit methyltransferase E
OS=Nonlabens dokdonensis (strain DSM 17205 / KCTC 12402
/ DSW-6) GN=DDD_2452 PE=3 SV=1
Length = 235
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 87/176 (49%), Gaps = 8/176 (4%)
Query: 65 HMTKVLRLSNDDRVQLFNGKGGLVEGCIR--NMDRTGIDFVALTDMEIIPPPNTQLHVFS 122
HMTKVLR D+V + +GKG L +G I ++ ID + + P P +LH+
Sbjct: 25 HMTKVLRKKVGDQVHITDGKGNLYDGKISLVTSNKCHID---IAFAKAYPKPFPRLHIAI 81
Query: 123 GFGTLKGGRADWLVEKCTELGASSVTPLLTERSSSISENRVDRLERVILAASKQCQRLHE 182
T R +W +EK TE+G +TPLL + S N V R E+++++A +Q + H
Sbjct: 82 A-PTKMNDRMEWFLEKATEMGIQKITPLLCDHSERKKIN-VARFEKILISALQQSYQFHL 139
Query: 183 MIFKPPVDIDDLSHLIAQSKLPLIATAKATPVLNALTSLEKQASGLIIIGPEGDFT 238
+ + D + K +A + T + +E +A +IIGPEGDF+
Sbjct: 140 PVLEELTSSQDFIKRKIEGK-KCVAHCEETEKIQLANFIETKADFTVIIGPEGDFS 194
>F2N687_PSEU6 (tr|F2N687) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas stutzeri (strain DSM 4166 / CMT.9.A)
GN=PSTAA_4094 PE=3 SV=1
Length = 238
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 97/205 (47%), Gaps = 15/205 (7%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
L RFF + P S G + + + +VLRLS VQLF+G G G + + +
Sbjct: 3 LSRFFIDA-PLSLGQHALPEASAHY-IGRVLRLSAGSAVQLFDGSGAEYRGELLEVGKKS 60
Query: 100 IDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTER----- 154
+ + +P ++H+ G G +G R DW ++K TELG S +TPL++ER
Sbjct: 61 VSVELHERLAGMPESPLRIHL--GQGLSRGERMDWAIQKATELGVSEITPLISERCEVRL 118
Query: 155 SSSISENRVDRLERVILAASKQCQRLHEMIFKPPVDIDDLSHLIAQSKLPLIATAKATPV 214
+ ++ R+ ++ ++A +QC R I PV + D + A KL L PV
Sbjct: 119 NDERADKRLAHWRQIAISACEQCGRSVLPIIHAPVTLRDWLDVEADLKLVL------HPV 172
Query: 215 LNALTSLEKQASGLIIIGPEGDFTE 239
L S K S +IGPEG ++
Sbjct: 173 AEPLASHAKPQSLAFLIGPEGGLSD 197
>R5FWR9_9FIRM (tr|R5FWR9) Ribosomal RNA small subunit methyltransferase E
OS=Faecalibacterium sp. CAG:1138 GN=BN468_01091 PE=4
SV=1
Length = 241
Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 100/207 (48%), Gaps = 18/207 (8%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
L RFF + + N+V V G EF H KVLR ++ L G G I ++ G
Sbjct: 3 LRRFFVKNSDFDE-NIVTVSGAEFVHAVKVLRYKVGYKIILSTGDGWDYMAEITDV---G 58
Query: 100 IDFVALTDMEIIPPPNTQLH-VFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSSSI 158
D+ P H V +LKGG+ D++ +K ELGAS + +E ++
Sbjct: 59 KDYFKAKITSKTPNKGMPTHRVTLCQASLKGGKNDFVAQKAVELGASEIVFFDSE---NV 115
Query: 159 SENRV--DRLERVILAASKQCQRLHEMIFKPPVDIDDLSHLIAQSK-LPLIATAKATPVL 215
+E RV DRL+++ L A+KQC R KP + + D S ++ SK P IA +
Sbjct: 116 TEKRVQKDRLDKIALEAAKQCHRAA----KPEIKVSDFSKILELSKTAPTIAAYEDEEEF 171
Query: 216 NALTSLEK---QASGLIIIGPEGDFTE 239
+ +LEK Q ++++G EG FT+
Sbjct: 172 SLSVALEKLRDQKEIILVVGSEGGFTK 198
>J3FAZ3_9PSED (tr|J3FAZ3) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas sp. GM25 GN=PMI24_01979 PE=3 SV=1
Length = 239
Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 100/206 (48%), Gaps = 16/206 (7%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
L RFF + P S G + + +++VLR++ D VQ+F+G G G + + +
Sbjct: 3 LSRFFIDA-PLSTGEHELPEAQAHY-ISRVLRMAEGDAVQMFDGSGHEFRGSLVEVGKKR 60
Query: 100 IDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSS-SI 158
+ V D + + L + G G +G R DW ++K TELG + +TP+ +ER +
Sbjct: 61 V--VVQIDEQFAGQIESPLQIHLGQGLSRGERMDWAIQKATELGVNEITPIFSERCEVRL 118
Query: 159 SENRVDR----LERVILAASKQCQRLHEMIFKPPVDIDD-LSHLIAQSKLPLIATAKATP 213
+ R D+ +V ++A +QC R + PPV + D L A+ KL L P
Sbjct: 119 KDERADKRLLHWRQVAISACEQCGRSRVPVIHPPVLLADWLKQTEAELKLVL------HP 172
Query: 214 VLNALTSLEKQASGLIIIGPEGDFTE 239
V L S K ++ +IGPEG ++
Sbjct: 173 VAEPLVSHAKPSTLAFLIGPEGGLSD 198
>F8H451_PSEUT (tr|F8H451) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas stutzeri (strain ATCC 17588 / DSM 5190 /
CCUG 11256 / JCM 5965 / LMG 11199 / NCIMB 11358 /
Stanier 221) GN=rsmE PE=3 SV=1
Length = 238
Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 97/208 (46%), Gaps = 21/208 (10%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
L RFF + P S G + + + +VLRLS VQLF+G G G + + +
Sbjct: 3 LSRFFIDA-PLSLGQHALPEASAHY-IGRVLRLSAGSAVQLFDGSGAEYRGELLEVGKKS 60
Query: 100 ID---FVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTER-- 154
+ LT M P + L + G G +G R DW ++K TELG S +TPL++ER
Sbjct: 61 VSVELHERLTGM-----PESPLRIHLGQGLSRGERMDWAIQKATELGVSEITPLISERCE 115
Query: 155 ---SSSISENRVDRLERVILAASKQCQRLHEMIFKPPVDIDDLSHLIAQSKLPLIATAKA 211
+ ++ R+ ++ ++A +QC R I PV + D + A KL L
Sbjct: 116 VRLNDERADKRLAHWRQIAISACEQCGRSVLPIIHAPVTLRDWLDVEADLKLVL------ 169
Query: 212 TPVLNALTSLEKQASGLIIIGPEGDFTE 239
PV L S K S +IGPEG ++
Sbjct: 170 HPVAEPLASHAKPQSLAFLIGPEGGLSD 197
>D6GS05_FILAD (tr|D6GS05) Ribosomal RNA small subunit methyltransferase E
OS=Filifactor alocis (strain ATCC 35896 / D40 B5)
GN=HMPREF0389_00361 PE=3 SV=1
Length = 247
Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 100/212 (47%), Gaps = 17/212 (8%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
+ RF+ + P K + +E H+TKVLR S D V++F+ G I +D
Sbjct: 1 MDRFYVD--HPFKEHAFLDDIEEIKHITKVLRFSVGDYVEIFDSVQGEYIAKISAIDSKR 58
Query: 100 IDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSSSIS 159
I F ++ P + + V G KG R ++L++K TELG ++ P+ +RS +
Sbjct: 59 IYFDIQKEL---PKSKSNIFVTLYQGIAKGHRMEFLIQKSTELGVDTIIPVRFQRSVAKL 115
Query: 160 E---NRVDRLERVILAASKQCQRLHEMIFKPPVDIDDLSHLIAQSKLPLIATAKATPV-- 214
E ++ R ++ L ASKQC+R K +D +LS + ++ L L + +
Sbjct: 116 EKDDKKIQRWNKICLEASKQCKRNKISCVKNAIDFSELSSELLKNDLNLFFYEEEHNLTL 175
Query: 215 -------LNALTSLEKQASGLIIIGPEGDFTE 239
LN + L+ S II+GPEG TE
Sbjct: 176 KSYLKEQLNRIKVLQNGVSIGIIVGPEGGITE 207
>M2TMB2_PSEST (tr|M2TMB2) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas stutzeri NF13 GN=B381_18684 PE=3 SV=1
Length = 238
Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 92/180 (51%), Gaps = 13/180 (7%)
Query: 65 HMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPPPNTQLHVFSGF 124
++++VLRLS VQLF+G G G + + + + V L + + P + L + G
Sbjct: 26 YISRVLRLSAGSAVQLFDGSGSEFRGELLEVGKKSV-IVELHE-RVTGMPESPLRIHLGQ 83
Query: 125 GTLKGGRADWLVEKCTELGASSVTPLLTERSS-SISENRVDR----LERVILAASKQCQR 179
G +G R DW ++K TELG + +TP+++ER +S+ R D+ ++ ++A +QC R
Sbjct: 84 GLSRGERMDWAIQKATELGVTQITPIVSERCEVRLSDERADKRLAHWRQIAISACEQCGR 143
Query: 180 LHEMIFKPPVDIDDLSHLIAQSKLPLIATAKATPVLNALTSLEKQASGLIIIGPEGDFTE 239
+ PV + D + A KL L PV LTS + + +IGPEG +E
Sbjct: 144 SVLPVIHSPVSLRDWLPVEADLKLVL------HPVAEPLTSHARPQTLAFLIGPEGGLSE 197
>R6BCC2_9CLOT (tr|R6BCC2) Ribosomal RNA small subunit methyltransferase E
OS=Clostridium sp. CAG:169 GN=BN513_01566 PE=4 SV=1
Length = 241
Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 101/209 (48%), Gaps = 19/209 (9%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
+PRFF+E + + G++ G++ H+ +VLR+ N + + + KG I +
Sbjct: 1 MPRFFTENIDQNSGSIT---GEDAKHIARVLRMKNGQPLTVCDTKGYDYACIIEGITEEQ 57
Query: 100 IDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSSSIS 159
ID L+ + PN +H++ K + + +++K ELG +S+TP++T R S
Sbjct: 58 IDLKVLSRSPSVTEPNVSVHLYQAMP--KADKLELIIQKAVELGVNSITPVMTRRCVSRP 115
Query: 160 E-----NRVDRLERVILAASKQCQRLHEMIFKPPVDIDDLSHLIAQSKLPLI----ATAK 210
+ +++R R+ L A+KQ R P +++D + QS P++ ATA
Sbjct: 116 DAKSMKKKLERYNRIALEAAKQSGRGIIPQVNPLLELDQALRQMQQSGCPILFYENATAP 175
Query: 211 ATPVLNALTSLEKQASGLIIIGPEGDFTE 239
A +L + T I+IG EG F E
Sbjct: 176 ARQLLQSAT-----GKIAILIGAEGGFDE 199
>E5AM29_BURRH (tr|E5AM29) Ribosomal RNA small subunit methyltransferase E
OS=Burkholderia rhizoxinica (strain DSM 19002 / CIP
109453 / HKI 454) GN=RBRH_03189 PE=3 SV=1
Length = 271
Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 97/210 (46%), Gaps = 19/210 (9%)
Query: 41 PRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMD-RTG 99
PRFF +P G+ + + D HM VLRL D+ LFNG+GG + + +D R+
Sbjct: 27 PRFFV-PMPLHSGHSMPLPDDVVRHM-HVLRLQAGDKAILFNGEGGQFDAELLQLDKRSA 84
Query: 100 IDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERS---- 155
V D + PP V G G + DWL+EK ELG +SV PL+T RS
Sbjct: 85 TVQVGRFDAREVEPP---YRVVLAQGIAGGDKMDWLLEKAIELGVASVIPLVTARSVVRL 141
Query: 156 -SSISENRVDRLERVILAASKQCQRLHEMIFKPPVDIDDLSHLIAQSKLP------LIAT 208
+ R + ++ AA +QC R PP D+ ++ L + LP L+ +
Sbjct: 142 TGERAARRHAHWQALVRAACEQCGRNQLPDVAPPTDV--MAWLESSVALPRDNALRLLLS 199
Query: 209 AKATPVLNALTSLEKQASGLIIIGPEGDFT 238
+A AL A +++IGPEG +
Sbjct: 200 PRAERPFAALPDTAPAAPVIVMIGPEGGLS 229
>F2I0D7_PELSM (tr|F2I0D7) Ribosomal RNA small subunit methyltransferase E
OS=Pelagibacter sp. (strain IMCC9063) GN=SAR11G3_00667
PE=3 SV=1
Length = 238
Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 105/201 (52%), Gaps = 16/201 (7%)
Query: 43 FFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG-ID 101
F SE L + N + + D+ +++ V+RL + D + LFNG G G + ++ I
Sbjct: 8 FLSERL--EENNKIELGKDQSHYISNVMRLKSGDELLLFNGIDGEFLGKVAGSEKKQTII 65
Query: 102 FVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERS--SSIS 159
V + P N L F LKG R D+L++KCTE+G S P++++ + +++
Sbjct: 66 QVHAKQRDQSKPSNISL----AFCPLKGQRLDFLIQKCTEVGLKSFIPVISDHTIVRNVN 121
Query: 160 ENRVDRLERVILAASKQCQRLHEMIFKPPVDIDDLSHLIAQSKLPLIATAKATPVLNALT 219
EN RL+++I+ +S+Q +LH +++++ H + + + L + N LT
Sbjct: 122 EN---RLKKIIIESSEQSDQLHIPQVLSALNLEEFLHFLKKEDVVLFGDISSKN--NDLT 176
Query: 220 SL--EKQASGLIIIGPEGDFT 238
L +K + ++ IGPEGDF+
Sbjct: 177 QLIEDKSKNYILFIGPEGDFS 197
>J2QJL1_9PSED (tr|J2QJL1) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas sp. GM30 GN=PMI25_02321 PE=3 SV=1
Length = 239
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 100/206 (48%), Gaps = 16/206 (7%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
L RFF + P S G + + +++VLR++ D VQLF+G G G + + +
Sbjct: 3 LSRFFIDA-PLSTGEHELPEAQAHY-ISRVLRMAEGDAVQLFDGSGHEFRGALVEVGKKR 60
Query: 100 IDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSS-SI 158
+ V D + + L + G G +G R DW ++K TELG + +TP+ ++R +
Sbjct: 61 V--VVQIDEQFAGQIESPLQIHLGQGLSRGERMDWAIQKATELGVTEITPIFSDRCEVRL 118
Query: 159 SENRVDR----LERVILAASKQCQRLHEMIFKPPVDIDD-LSHLIAQSKLPLIATAKATP 213
+ R D+ +V ++A +QC R + PPV + D L A+ KL L P
Sbjct: 119 KDERADKRLLHWRQVAISACEQCGRSRVPVIHPPVLLTDWLKQSEAELKLVL------HP 172
Query: 214 VLNALTSLEKQASGLIIIGPEGDFTE 239
V L S + A+ +IGPEG ++
Sbjct: 173 VAEPLVSHARPATLAFLIGPEGGLSD 198
>J2MFF7_9PSED (tr|J2MFF7) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas sp. GM102 GN=PMI18_01741 PE=3 SV=1
Length = 239
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 90/181 (49%), Gaps = 14/181 (7%)
Query: 65 HMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPPPNTQLHVFSGF 124
++++VLR++ D VQLF+G G G + + + + + D + L V G
Sbjct: 26 YISRVLRMAEGDAVQLFDGSGHEFRGTLAEVGKKRV--LVNIDESFAGQVESSLAVHLGQ 83
Query: 125 GTLKGGRADWLVEKCTELGASSVTPLLTERSS-SISENRVDR----LERVILAASKQCQR 179
G +G R DW ++K TELG S +TP+ T+R + + R D+ +V ++A +QC R
Sbjct: 84 GLSRGERMDWAIQKATELGVSEITPIFTDRCEVRLKDERADKRLMHWRQVAISACEQCGR 143
Query: 180 LHEMIFKPPVDIDD-LSHLIAQSKLPLIATAKATPVLNALTSLEKQASGLIIIGPEGDFT 238
+ PP+ + D L A+ KL L PV L S K A+ +IGPEG +
Sbjct: 144 SSVPVIHPPLLLADWLKQTEAELKLVL------HPVAEPLVSHAKPATLAFLIGPEGGLS 197
Query: 239 E 239
+
Sbjct: 198 D 198
>F2K662_PSEBN (tr|F2K662) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas brassicacearum (strain NFM421)
GN=PSEBR_a5292 PE=3 SV=1
Length = 239
Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 91/181 (50%), Gaps = 14/181 (7%)
Query: 65 HMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPPPNTQLHVFSGF 124
++ +VLR++ D VQ+F+G G G + + + + D + P + L + G
Sbjct: 26 YIGRVLRMAEGDAVQVFDGSGQEFRGTLAEVGKKRVRVQ--LDEQFAGQPESPLRIHLGQ 83
Query: 125 GTLKGGRADWLVEKCTELGASSVTPLLTERSS-SISENRVDR----LERVILAASKQCQR 179
G +G R DW ++K TELG S +TP+ +ER + + R D+ +V ++A +QC R
Sbjct: 84 GLSRGERMDWAIQKATELGVSEITPIFSERCEVRLKDERADKRLLHWRQVAISACEQCGR 143
Query: 180 LHEMIFKPPVDIDD-LSHLIAQSKLPLIATAKATPVLNALTSLEKQASGLIIIGPEGDFT 238
+ PP+ + D L A+ +L L PV L S +K ++ +IGPEG +
Sbjct: 144 SSVPVIHPPLLLADWLKQTEAELRLVL------HPVAEPLVSHDKPSTLAFLIGPEGGLS 197
Query: 239 E 239
+
Sbjct: 198 D 198
>F3I032_PSESF (tr|F3I032) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas syringae pv. actinidiae str. M302091
GN=PSYAC_08562 PE=3 SV=1
Length = 239
Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 100/205 (48%), Gaps = 14/205 (6%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
L RFF+ET P S G + + +++VLR++ D +QLF+G G G + + +
Sbjct: 3 LSRFFTET-PLSLGEHELPEAQAHY-ISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKKR 60
Query: 100 IDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTER----- 154
+ V L + L + G G +G R DW ++K TELG S +TP+++ER
Sbjct: 61 VR-VQLNKC-FAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSERCEVRL 118
Query: 155 SSSISENRVDRLERVILAASKQCQRLHEMIFKPPVDIDDLSHLIAQSKLPLIATAKATPV 214
+E R +++ ++A +QC R + PP+ + D L ++ L L+ PV
Sbjct: 119 KDERAEKRQAHWQQIAISACEQCGRSVVPVIHPPMTLADWIKL-TEADLKLV----LHPV 173
Query: 215 LNALTSLEKQASGLIIIGPEGDFTE 239
LTS K S +IGPEG +
Sbjct: 174 AEPLTSHAKPVSLAFLIGPEGGLND 198
>L8NAS6_PSESY (tr|L8NAS6) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas syringae pv. syringae B64 GN=rsmE PE=3
SV=1
Length = 239
Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 102/206 (49%), Gaps = 16/206 (7%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
L RFF+ET P S G + + +++VLR++ D +QLF+G G G + + +
Sbjct: 3 LSRFFTET-PLSLGEHELPEAQAHY-ISRVLRMTEGDALQLFDGSGQEFLGTLLEVGKKR 60
Query: 100 IDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTER----- 154
+ V LT+ + L + G G +G R DW ++K TELG S +TP+++ER
Sbjct: 61 V-HVQLTE-SFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSERCEVRL 118
Query: 155 SSSISENRVDRLERVILAASKQCQRLHEMIFKPPVDIDD-LSHLIAQSKLPLIATAKATP 213
+E R +++ ++A +QC R + P+ + + + H A KL L P
Sbjct: 119 KDERAEKRQAHWQQIAISACEQCGRSVVPVIHAPMPLAEWIKHTEADLKLVL------HP 172
Query: 214 VLNALTSLEKQASGLIIIGPEGDFTE 239
V LTS +K S +IGPEG +
Sbjct: 173 VAEPLTSHDKPVSLAFLIGPEGGLND 198
>I4K1L3_PSEFL (tr|I4K1L3) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas fluorescens Q8r1-96 GN=PflQ8_5451 PE=3
SV=1
Length = 239
Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 91/181 (50%), Gaps = 14/181 (7%)
Query: 65 HMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPPPNTQLHVFSGF 124
++ +VLR++ D VQ+F+G G G + + + + D + P + L + G
Sbjct: 26 YIGRVLRMAEGDAVQVFDGSGQEFRGTLAEVGKKRVRVQ--LDEQFAGQPESPLRIHLGQ 83
Query: 125 GTLKGGRADWLVEKCTELGASSVTPLLTERSS-SISENRVDR----LERVILAASKQCQR 179
G +G R DW ++K TELG S +TP+ +ER + + R D+ +V ++A +QC R
Sbjct: 84 GLSRGERMDWAIQKATELGVSEITPIFSERCEVRLKDERADKRLLHWRQVAISACEQCGR 143
Query: 180 LHEMIFKPPVDIDD-LSHLIAQSKLPLIATAKATPVLNALTSLEKQASGLIIIGPEGDFT 238
+ PP+ + D L A+ +L L PV L S +K ++ +IGPEG +
Sbjct: 144 SSVPVIHPPLLLADWLKQTEAELRLVL------HPVAEPLVSHDKPSTLAFLIGPEGGLS 197
Query: 239 E 239
+
Sbjct: 198 D 198
>F3EQ99_9PSED (tr|F3EQ99) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas syringae pv. mori str. 301020
GN=PSYMO_00955 PE=3 SV=1
Length = 239
Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 101/206 (49%), Gaps = 16/206 (7%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
L RFF+E P S G + + +++VLR++ D +QLF+G G G + + +
Sbjct: 3 LSRFFTEA-PLSLGEHELPEAQAHY-ISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKKR 60
Query: 100 IDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTER----- 154
+ V LT+ + L + G G +G R DW ++K TELG +TP+++ER
Sbjct: 61 V-HVQLTE-SFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVGEITPIVSERCEVRL 118
Query: 155 SSSISENRVDRLERVILAASKQCQRLHEMIFKPPVDIDD-LSHLIAQSKLPLIATAKATP 213
+E R +++ ++A +QC R + P+ + + + H A KL L P
Sbjct: 119 KDERAEKRQAHWQQIAISACEQCGRSVVPVIHAPMPLAEWIKHTEADLKLVL------HP 172
Query: 214 VLNALTSLEKQASGLIIIGPEGDFTE 239
V LTS +K AS +IGPEG +
Sbjct: 173 VAEPLTSHDKPASLAFLIGPEGGLND 198
>F3D836_9PSED (tr|F3D836) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas syringae pv. aesculi str. 0893_23
GN=PSYAE_00685 PE=3 SV=1
Length = 239
Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 101/206 (49%), Gaps = 16/206 (7%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
L RFF+E P S G + + +++VLR++ D +QLF+G G G + + +
Sbjct: 3 LSRFFTEA-PLSLGEHELPEAQAHY-ISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKKR 60
Query: 100 IDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTER----- 154
+ V LT+ + L + G G +G R DW ++K TELG +TP+++ER
Sbjct: 61 V-HVQLTE-SFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVGEITPIVSERCEVRL 118
Query: 155 SSSISENRVDRLERVILAASKQCQRLHEMIFKPPVDIDD-LSHLIAQSKLPLIATAKATP 213
+E R +++ ++A +QC R + P+ + + + H A KL L P
Sbjct: 119 KDERAEKRQAHWQQIAISACEQCGRSVVPVIHAPMPLAEWIKHTEADLKLVL------HP 172
Query: 214 VLNALTSLEKQASGLIIIGPEGDFTE 239
V LTS +K AS +IGPEG +
Sbjct: 173 VAEPLTSHDKPASLAFLIGPEGGLND 198
>D7HUD5_PSESS (tr|D7HUD5) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas savastanoi pv. savastanoi NCPPB 3335
GN=PSA3335_0445 PE=3 SV=1
Length = 239
Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 101/206 (49%), Gaps = 16/206 (7%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
L RFF+E P S G + + +++VLR++ D +QLF+G G G + + +
Sbjct: 3 LSRFFTEA-PLSLGEHELPEAQAHY-ISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKKR 60
Query: 100 IDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTER----- 154
+ V LT+ + L + G G +G R DW ++K TELG +TP+++ER
Sbjct: 61 V-HVQLTE-SFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVGEITPIVSERCEVRL 118
Query: 155 SSSISENRVDRLERVILAASKQCQRLHEMIFKPPVDIDD-LSHLIAQSKLPLIATAKATP 213
+E R +++ ++A +QC R + P+ + + + H A KL L P
Sbjct: 119 KDERAEKRQAHWQQIAISACEQCGRSVVPVIHAPMPLAEWIKHTEADLKLVL------HP 172
Query: 214 VLNALTSLEKQASGLIIIGPEGDFTE 239
V LTS +K AS +IGPEG +
Sbjct: 173 VAEPLTSHDKPASLAFLIGPEGGLND 198
>C3XCH1_OXAFO (tr|C3XCH1) Ribosomal RNA small subunit methyltransferase E
OS=Oxalobacter formigenes OXCC13 GN=OFBG_01925 PE=3 SV=1
Length = 242
Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 92/180 (51%), Gaps = 16/180 (8%)
Query: 68 KVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALT--DMEIIPPPNTQLHVFSGFG 125
+VLRL+ + + LFNG+GG I ++DRT + L+ D E+ P + L
Sbjct: 27 QVLRLTEGNEIVLFNGEGGEYSARIISLDRTKTNVKILSRHDREVELPYDITL----AQA 82
Query: 126 TLKGGRADWLVEKCTELGASSVTPLLTERS-----SSISENRVDRLERVILAASKQCQRL 180
+ G+ DW++EK ELGA+ + PL +RS + +E R+ R + ++ AAS+QC R
Sbjct: 83 LPEAGKMDWIIEKAVELGAAGIQPLAAQRSVVRLNADRAEKRLARWQTIVTAASEQCGRN 142
Query: 181 HEMIFKPPVDIDDLSHLIAQSK--LPLIATAKATPVLNALTSLEKQASGLIIIGPEGDFT 238
M PV + I S L ++ T +AT L+ + + I+IGPEG F+
Sbjct: 143 TLMEISEPVAFNT---FIDNSGGCLRVMFTPRATETLSGWARKQAPQAITIMIGPEGGFS 199
>D7VJ48_9SPHI (tr|D7VJ48) Ribosomal RNA small subunit methyltransferase E
OS=Sphingobacterium spiritivorum ATCC 33861
GN=HMPREF0766_11017 PE=3 SV=1
Length = 237
Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 97/202 (48%), Gaps = 14/202 (6%)
Query: 43 FFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMD--RTGI 100
F++ + N + + +E H +VLRL+N D++ L +G+GG I + RT +
Sbjct: 4 FYTPEIESHFANFILTE-EESKHAIRVLRLANRDQIHLIDGRGGFYRAEIIDAHPKRTTL 62
Query: 101 DFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSSSISE 160
+ + E P+ LH+ T R +W +EK TE+G +TP+++E S E
Sbjct: 63 QIIEI--QEAFQKPSYHLHMAVA-PTKNIERFEWFLEKATEVGVQEITPVISEHSER-KE 118
Query: 161 NRVDRLERVILAASKQCQRLHEMIFKPPVDIDDL----SHLIAQSKLPLIATAKATPVLN 216
+ DRL +VI+AA KQ + + P + + + + AQ + ++ +
Sbjct: 119 VKPDRLNKVIVAAMKQSYKAYMPKLNPAMTLTNFLKQQEQVSAQKAIAHCVDSEKQYLSQ 178
Query: 217 ALTSLEKQASGLIIIGPEGDFT 238
T Q +I+IGPEGDF+
Sbjct: 179 VFTP---QQDYVILIGPEGDFS 197
>R9GN36_9SPHI (tr|R9GN36) Ribosomal RNA small subunit methyltransferase E
OS=Arcticibacter svalbardensis MN12-7 GN=ADIARSV_3693
PE=4 SV=1
Length = 232
Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 84/190 (44%), Gaps = 4/190 (2%)
Query: 49 PPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDM 108
P G+ + +E H +VLRL +D +QL +GKGGL + I D + +
Sbjct: 7 PDITGDQYDLNTEESKHCIRVLRLQQNDIIQLIDGKGGLYDAKIVQADPKKTSLTIVNCV 66
Query: 109 EIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSSSISENRVDRLER 168
N LH+ T R +W VEK TE+G +TPL+ +RS E + +RL +
Sbjct: 67 REYGKRNHYLHIAIA-PTKNMERLEWFVEKATEIGIDEITPLICDRSER-KEVKFERLNK 124
Query: 169 VILAASKQCQRLHEMIFKPPVDIDDLSHLIAQSKLPLIATAKATPVLNALTSLEKQASGL 228
+I +A KQ + + V D + IA L T L K
Sbjct: 125 IITSAVKQSIKAYHPQLNEQVRFKDF--IKNSPGQRYIAHCMDGNKLQFSTDLIKHDRYT 182
Query: 229 IIIGPEGDFT 238
++IGPEGDFT
Sbjct: 183 VLIGPEGDFT 192
>I4JR01_PSEST (tr|I4JR01) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas stutzeri TS44 GN=YO5_19047 PE=3 SV=1
Length = 238
Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 91/180 (50%), Gaps = 13/180 (7%)
Query: 65 HMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPPPNTQLHVFSGF 124
++ +VLRLS+ VQLF+G G G + + + + P Q+H+ G
Sbjct: 26 YIGRVLRLSSGSAVQLFDGSGQEYLGELVEVGKKQARVELRQQFDGQPESPLQIHL--GQ 83
Query: 125 GTLKGGRADWLVEKCTELGASSVTPLLTERSS-SISENRVDR----LERVILAASKQCQR 179
G +G R DW ++K TELG + +TPL++ER +++ R D+ ++ ++A +QC R
Sbjct: 84 GLSRGERMDWAIQKATELGVAQITPLISERCEVRLNDERADKRLAHWRQIAISACEQCGR 143
Query: 180 LHEMIFKPPVDIDDLSHLIAQSKLPLIATAKATPVLNALTSLEKQASGLIIIGPEGDFTE 239
+ PP +DD + A+ KL L PV LTS + + +IGPEG +E
Sbjct: 144 SVVPMIHPPQLLDDWLQVEAELKLVL------HPVAAPLTSHAQPRTLAFLIGPEGGLSE 197
>K6CD75_PSEST (tr|K6CD75) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas stutzeri KOS6 GN=B597_23332 PE=3 SV=1
Length = 238
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 91/180 (50%), Gaps = 13/180 (7%)
Query: 65 HMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPPPNTQLHVFSGF 124
++++VLRLS VQLF+G G G + + + + V L + + P + L + G
Sbjct: 26 YISRVLRLSAGSAVQLFDGSGNEFRGELLEVGKKSV-IVELHE-RLTGMPESPLRIHLGQ 83
Query: 125 GTLKGGRADWLVEKCTELGASSVTPLLTER-----SSSISENRVDRLERVILAASKQCQR 179
G +G R DW ++K TELG + +TP+++ER S ++ R+ ++ ++A +QC R
Sbjct: 84 GLSRGERMDWAIQKTTELGVAQITPVVSERCEVRLSDERADKRLAHWRQIAISACEQCGR 143
Query: 180 LHEMIFKPPVDIDDLSHLIAQSKLPLIATAKATPVLNALTSLEKQASGLIIIGPEGDFTE 239
+ PV + D + A KL L PV LTS + + +IGPEG +E
Sbjct: 144 SVLPVIHSPVSLRDWLTVEADLKLVL------HPVAEPLTSHARPQTLAFLIGPEGGLSE 197
>H0TCY7_9BRAD (tr|H0TCY7) Ribosomal RNA small subunit methyltransferase E
OS=Bradyrhizobium sp. STM 3843 GN=BRAS3843_1050015 PE=3
SV=1
Length = 248
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 101/203 (49%), Gaps = 11/203 (5%)
Query: 41 PRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGI 100
PR F + S G V ++ D+ ++ VLRLS DRV +FNG+ G + I R
Sbjct: 9 PRLFVDA-ALSTGQTVALERDQSNYLGNVLRLSTGDRVLVFNGRDGEWQATIAGRKRAE- 66
Query: 101 DFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSSSISE 160
LT E P + V F LK R D++V+K E+GA + P++T R + ++
Sbjct: 67 ---QLTVQEQTRPQDRLPDVAYVFAPLKHARLDYMVQKAVEMGACRLQPVIT-RFTQVAR 122
Query: 161 NRVDRLERVILAASKQCQRLHEMIFKPPVDIDD-LSHLIAQSKLPLI--ATAKATPVLNA 217
+R+ ++ A++QC L PV ++ LS AQ L A A+P L A
Sbjct: 123 VNGERMRANVIEAAEQCGILSLAEVTDPVPLERFLSQRSAQRLLVFCDEAAEVASP-LEA 181
Query: 218 LTSLEKQASGL-IIIGPEGDFTE 239
L + + A+G+ ++IGPEG F E
Sbjct: 182 LRDVGEPAAGIDVLIGPEGGFAE 204
>D7JG72_9BACT (tr|D7JG72) Ribosomal RNA small subunit methyltransferase E
OS=Bacteroidetes oral taxon 274 str. F0058
GN=HMPREF0156_01314 PE=3 SV=1
Length = 232
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 89/181 (49%), Gaps = 9/181 (4%)
Query: 61 DEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPPPNTQLHV 120
+E +H TKVLR+ D VQ+ +GKG + E I D + M +LH+
Sbjct: 18 EESYHCTKVLRMREGDVVQVTDGKGNMYEAEIVLPDTVHTMLAIRSVMSDFGKRRYRLHL 77
Query: 121 FSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSSSISENRVDRLERVILAASKQCQRL 180
T R +WLVEK E+G +TPLL + S + + +RLE++ LAA+KQ +
Sbjct: 78 AVA-PTKNIDRFEWLVEKAVEIGVDRITPLLCQHSERRT-VKTERLEKIALAAAKQSLK- 134
Query: 181 HEMIFKPPVD-IDDLSHLIAQS--KLPLIATAKATPVLNALTSLEKQASGLIIIGPEGDF 237
+ P +D I + + A S + +A P N + + S +++IGPEGDF
Sbjct: 135 ---AYIPKIDPITHFAEITAHSDDEQRFVAHCYDMPKENLFDACRPRQSTVVLIGPEGDF 191
Query: 238 T 238
+
Sbjct: 192 S 192
>Q5QVM6_IDILO (tr|Q5QVM6) Ribosomal RNA small subunit methyltransferase E
OS=Idiomarina loihiensis (strain ATCC BAA-735 / DSM
15497 / L2-TR) GN=IL2216 PE=3 SV=1
Length = 243
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 95/192 (49%), Gaps = 12/192 (6%)
Query: 54 NVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPP 113
N + D F H+ KVLRL+ D + LFNG G E I ++ + FVA +
Sbjct: 16 NETELSADAFQHLIKVLRLNVGDSIVLFNGDGQNYEAKITSVQKKSAQFVATSSQANASE 75
Query: 114 PNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSS-SISENRVDR----LER 168
+H+ +G R D++++K ELG + +TPL +ER +S +R+++ ++
Sbjct: 76 SPVNIHLAQVVS--RGDRMDFVLQKSVELGVTEITPLFSERCGVKLSGDRLEKKQLQWQK 133
Query: 169 VILAASKQCQRLHEMIFKPPVDIDDLSHLIAQSKLPLIATAKATPVLNALTSLEKQASGL 228
++ +A +QC R KP + D IA S L T T L+S ++ G+
Sbjct: 134 IVHSACEQCGRSVVPQVKPAQQLTD---FIASSFEGLRLTLDPTAT-QPLSSFQQAEKGI 189
Query: 229 -IIIGPEGDFTE 239
++IGPEG FT+
Sbjct: 190 QLLIGPEGGFTD 201
>B3ENQ5_CHLPB (tr|B3ENQ5) Ribosomal RNA small subunit methyltransferase E
OS=Chlorobium phaeobacteroides (strain BS1)
GN=Cphamn1_2239 PE=3 SV=1
Length = 248
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 82/146 (56%), Gaps = 9/146 (6%)
Query: 53 GNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIP 112
G + V+G+EF+H+TKVLR + + + +G G V I + R G+ A+T+ + +
Sbjct: 15 GGALTVEGEEFFHITKVLRKKEREVIHITDGMGLSVTAEITKIGRNGLT-AAVTEKKKVL 73
Query: 113 PPNTQLHVFSGFGTLKGG-RADWLVEKCTELGASSVTPLLTERSSS--ISENRVDRLER- 168
PP+ ++ V LK R D+ +EK TELG + + P++TER+ S +E R +LER
Sbjct: 74 PPSAEVTV--ALSLLKSSQRFDFFLEKATELGVAGIVPMITERTVSQPKAEKRARKLERW 131
Query: 169 --VILAASKQCQRLHEMIFKPPVDID 192
V+++A+ Q +R H P+ D
Sbjct: 132 KKVVVSAALQTKRYHFPEITAPLHFD 157
>R4VEM9_9GAMM (tr|R4VEM9) 16S ribosomal RNA methyltransferase RsmE OS=Idiomarina
loihiensis GSL 199 GN=K734_11160 PE=4 SV=1
Length = 243
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 95/192 (49%), Gaps = 12/192 (6%)
Query: 54 NVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPP 113
N + D F H+ KVLRL+ D + LFNG G E I ++ + FVA +
Sbjct: 16 NETELSADAFQHLIKVLRLNVGDSIVLFNGDGQNYEAKITSVQKKSAQFVATSSQANASE 75
Query: 114 PNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSS-SISENRVDR----LER 168
+H+ +G R D++++K ELG + +TPL +ER +S +R+++ ++
Sbjct: 76 SPVNIHLAQVVS--RGDRMDFVLQKSVELGVTEITPLFSERCGVKLSGDRLEKKQLQWQK 133
Query: 169 VILAASKQCQRLHEMIFKPPVDIDDLSHLIAQSKLPLIATAKATPVLNALTSLEKQASGL 228
++ +A +QC R KP + D IA S L T T L+S ++ G+
Sbjct: 134 IVHSACEQCGRSVVPQVKPAQQLTD---FIASSFEGLRLTLDPTAT-QPLSSFQQAEKGI 189
Query: 229 -IIIGPEGDFTE 239
++IGPEG FT+
Sbjct: 190 QLLIGPEGGFTD 201
>H0JG53_9PSED (tr|H0JG53) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas psychrotolerans L19 GN=PPL19_16690 PE=3
SV=1
Length = 242
Score = 79.3 bits (194), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 93/181 (51%), Gaps = 14/181 (7%)
Query: 65 HMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPPPNTQLHVFSGF 124
++ +VLRL+ D VQLF+G G G + + + + V LT+ E+ P++ L + G
Sbjct: 26 YLGRVLRLAPGDAVQLFDGSGREYLGQVAEVGKKTLS-VELTE-ELPGQPDSPLRIHLGQ 83
Query: 125 GTLKGGRADWLVEKCTELGASSVTPLLTER-----SSSISENRVDRLERVILAASKQCQR 179
G +G R DW ++K TELG + +TPL++ER ++ R+ +V ++A +QC R
Sbjct: 84 GLSRGERMDWAIQKATELGVAEITPLVSERCEVRLKDERADKRLQHWRQVAISACEQCGR 143
Query: 180 LHEMIFKPPVDIDDL-SHLIAQSKLPLIATAKATPVLNALTSLEKQASGLIIIGPEGDFT 238
+ PP + D + L A KL L PV L S + ++IGPEG +
Sbjct: 144 STVPLIHPPQLLADWQAGLDADLKLVL------HPVAEPLESHARPTRLALLIGPEGGLS 197
Query: 239 E 239
E
Sbjct: 198 E 198
>M7Y4V9_9RHIZ (tr|M7Y4V9) 16S rRNA m3U1498 methyltransferase OS=Candidatus
Liberibacter americanus PW_SP GN=G653_04107 PE=4 SV=1
Length = 249
Score = 79.3 bits (194), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 100/201 (49%), Gaps = 7/201 (3%)
Query: 39 GLPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRT 98
+ R F + P S G + ++ +++ VLR+ + + LFNGK G G I D
Sbjct: 6 NIKRLFVD-FPLSNGYKGKASEYQYNYLSNVLRMKEGENILLFNGKDGEWMGEISYKDTK 64
Query: 99 GIDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSSSI 158
GI + + P ++FS +K R ++++K E+GA S+ P++T+ + +
Sbjct: 65 GIILKVIDQTKTQTQPFDLQYIFS---PIKNKRLIYMIQKSVEMGAGSIHPVITKYTQNK 121
Query: 159 SENRVDRLERVILAASKQCQRLHEMIFKPPVDIDDLSHLIAQSKLPLIA--TAKATPVLN 216
+ N +DR+ I++A++QC + PPV++D + ++L + A T LN
Sbjct: 122 NYN-MDRIRTYIISAAEQCNIISIPSIYPPVELDVILENWDNNRLIIFADETYNEKNSLN 180
Query: 217 ALTSLEKQASGLIIIGPEGDF 237
L + ++ I++GPEG +
Sbjct: 181 ILKKIPNKSPLAILVGPEGGY 201
>L0GFY1_PSEST (tr|L0GFY1) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas stutzeri RCH2 GN=Psest_0305 PE=3 SV=1
Length = 238
Score = 79.3 bits (194), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 90/180 (50%), Gaps = 13/180 (7%)
Query: 65 HMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPPPNTQLHVFSGF 124
++ +VLRL+ VQLF+G G G + + + + ++ +P Q+H+ G
Sbjct: 26 YIGRVLRLTAGSAVQLFDGSGDEFRGELLEVGKKTVTVELHEHLKGMPESALQIHL--GQ 83
Query: 125 GTLKGGRADWLVEKCTELGASSVTPLLTER-----SSSISENRVDRLERVILAASKQCQR 179
G +G R DW ++K TELG + +TP+++ER + ++ R+ ++ ++A +QC R
Sbjct: 84 GLSRGERMDWAIQKATELGVAQITPIISERCEVRLNDERADKRLAHWRQIAISACEQCGR 143
Query: 180 LHEMIFKPPVDIDDLSHLIAQSKLPLIATAKATPVLNALTSLEKQASGLIIIGPEGDFTE 239
I PV + D + A+ KL L P+ L S K + +IGPEG +E
Sbjct: 144 SVLPIIHAPVSLRDWLAVEAELKLVL------HPIAEPLASHAKPRTLAFLIGPEGGLSE 197
>J8VDU7_PSEPU (tr|J8VDU7) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas putida S11 GN=PPS11_14051 PE=3 SV=1
Length = 207
Score = 79.3 bits (194), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 91/174 (52%), Gaps = 14/174 (8%)
Query: 72 LSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPPPNTQLHVFSGFGTLKGGR 131
++ D VQLF+G G G + + + + V+L D + ++ LHV G G +G R
Sbjct: 1 MAPGDAVQLFDGSGQEYRGQLLEVGKKTVR-VSL-DQALAGQADSPLHVHLGQGLSRGER 58
Query: 132 ADWLVEKCTELGASSVTPLLTERSS-SISENRVDR----LERVILAASKQCQRLHEMIFK 186
DW ++K TELGA+ +TP+++ER + + R D+ +V ++A +QC R +
Sbjct: 59 MDWAIQKATELGANEITPIVSERCEVRLKDERADKRLAHWRQVAISACEQCGRSTLPVIH 118
Query: 187 PPVDIDD-LSHLIAQSKLPLIATAKATPVLNALTSLEKQASGLIIIGPEGDFTE 239
PPV + + L+ A KL L PV LTS K A+ +IGPEG +E
Sbjct: 119 PPVTLAEWLNSANADLKLVL------HPVAEPLTSHAKPATLAFLIGPEGGLSE 166
>H1DJS4_9PORP (tr|H1DJS4) Ribosomal RNA small subunit methyltransferase E
OS=Odoribacter laneus YIT 12061 GN=HMPREF9449_02510 PE=3
SV=1
Length = 241
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 91/206 (44%), Gaps = 33/206 (16%)
Query: 49 PPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCI--RNMDRTGIDFVALT 106
P +G + R+ +E H KVLRL D V L +G+GG G I N+ + A T
Sbjct: 7 PDIEGEIYRLNPEESKHCIKVLRLEEGDTVALVDGRGGFYSGIITVANVKGCQVKVTACT 66
Query: 107 ----------DMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSS 156
+ I P N + R +W +EKCTE+G TP+ ++
Sbjct: 67 RQYEKRPFCLHIAIAPTKNIE-------------RTEWFLEKCTEIGIDEFTPI----AA 109
Query: 157 SISENRV---DRLERVILAASKQCQRLHEMIFKPPVDIDDLSHLIAQSKLPLIATAKATP 213
+ SE RV +RLE+VI+AA KQ + + + P + + + Q K IA +
Sbjct: 110 AHSERRVVKEERLEKVIVAAMKQSLKAYLPVLHPMMRFQEFL-VNCQYKHKFIAHCQPGT 168
Query: 214 VLNALTSLEKQASGLIIIGPEGDFTE 239
+I+IGPEGDF+E
Sbjct: 169 KKRLDEVYTAGEDAVILIGPEGDFSE 194
>R5VFQ1_9PORP (tr|R5VFQ1) Ribosomal RNA small subunit methyltransferase E
OS=Odoribacter laneus CAG:561 GN=BN709_01658 PE=4 SV=1
Length = 241
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 91/206 (44%), Gaps = 33/206 (16%)
Query: 49 PPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCI--RNMDRTGIDFVALT 106
P +G + R+ +E H KVLRL D V L +G+GG G I N+ + A T
Sbjct: 7 PDIEGEIYRLNPEESKHCIKVLRLEEGDTVALVDGRGGFYSGIITVANVKGCQVKVTACT 66
Query: 107 ----------DMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSS 156
+ I P N + R +W +EKCTE+G TP+ ++
Sbjct: 67 RQYEKRPFCLHIAIAPTKNIE-------------RTEWFLEKCTEIGIDEFTPI----AA 109
Query: 157 SISENRV---DRLERVILAASKQCQRLHEMIFKPPVDIDDLSHLIAQSKLPLIATAKATP 213
+ SE RV +RLE+VI+AA KQ + + + P + + + Q K IA +
Sbjct: 110 AHSERRVVKEERLEKVIVAAMKQSLKAYLPVLHPMMRFQEFL-VNCQYKHKFIAHCQPGT 168
Query: 214 VLNALTSLEKQASGLIIIGPEGDFTE 239
+I+IGPEGDF+E
Sbjct: 169 KKRLDEVYTAGEDAVILIGPEGDFSE 194
>E8YFB5_9BURK (tr|E8YFB5) Ribosomal RNA small subunit methyltransferase E
OS=Burkholderia sp. CCGE1001 GN=BC1001_3037 PE=3 SV=1
Length = 246
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 106/213 (49%), Gaps = 23/213 (10%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
+PRFF T P S ++V++ D H+ VLRL D + LFNG+GG + ++R
Sbjct: 1 MPRFFVGT-PLSPDDIVQLPDDVVRHVL-VLRLQTGDSIVLFNGEGGEYSAELVAIERRA 58
Query: 100 I--DFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERS-S 156
+ D+E+ PP L G G + DWL+EK ELGASS PL T RS
Sbjct: 59 VTVKIREFRDIEVEPPYRLTL----AQGIASGDKMDWLIEKAVELGASSFVPLTTTRSVV 114
Query: 157 SISENRVDR----LERVILAASKQC--QRLHEMIFKPPVD-----IDDLSHLIAQSKLPL 205
+S R R E ++ A+ +QC RL E++ PV + + + A +L +
Sbjct: 115 RLSGERALRRHAHWEGIVRASCEQCGRNRLPEVM---PVREIATWLGAMPRVPAGDELRI 171
Query: 206 IATAKATPVLNALTSLEKQASGLIIIGPEGDFT 238
+ + +A+ +AL + + +++GPEG F+
Sbjct: 172 LLSPRASIHFSALPASPPKGPVTVLVGPEGGFS 204
>I4ADA0_DESDJ (tr|I4ADA0) Ribosomal RNA small subunit methyltransferase E
OS=Desulfitobacterium dehalogenans (strain ATCC 51507 /
DSM 9161 / JW/IU-DC1) GN=Desde_3662 PE=3 SV=1
Length = 245
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 96/193 (49%), Gaps = 9/193 (4%)
Query: 54 NVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPP 113
NV ++G E H+ +VLRL+ D++ F+ G + I ++ + + + P
Sbjct: 12 NVFWLKGPEREHLVRVLRLAVGDQIIGFDNSGAEYKAVINKIEDQSVTCGIME--QDYPE 69
Query: 114 PNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERS-----SSISENRVDRLER 168
+ V+ G KG + +W+++K TELG + + PL T+R+ S +++RV+R ++
Sbjct: 70 VEARTQVYLAAGLSKGEKMEWVIQKGTELGMAGLIPLRTKRAVMKLEGSKAKDRVERWQK 129
Query: 169 VILAASKQCQRLHEMIFKPPVDIDDLSHLIAQSKLPLI--ATAKATPVLNALTSLEKQAS 226
+ ASKQ R+ E P D +L L+ + LI + K + + L + Q
Sbjct: 130 ISSEASKQSHRVREPKLFPVSDWKELKTLLPSTTQWLIPYESEKTKTLQSVLRNFSPQEP 189
Query: 227 GLIIIGPEGDFTE 239
++IGPEG F E
Sbjct: 190 IALLIGPEGGFDE 202
>J2XVY6_PSEFL (tr|J2XVY6) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas fluorescens Q2-87 GN=PflQ2_0435 PE=3 SV=1
Length = 239
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 100/206 (48%), Gaps = 16/206 (7%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
L RFF + P S G+ + + + +VLR++ D VQ+F+G G G + + +
Sbjct: 3 LSRFFIDA-PLSLGDHELPEAQAHY-IGRVLRMAEGDAVQVFDGSGQEFRGTLAEVGKKR 60
Query: 100 IDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSS-SI 158
+ D + + LH+ G G +G R DW ++K TELG S +TP+ +ER +
Sbjct: 61 VRVQ--LDEQFAGQVESPLHIHLGQGLSRGERMDWAIQKATELGVSEITPIFSERCEVRL 118
Query: 159 SENRVDR----LERVILAASKQCQRLHEMIFKPPVDIDD-LSHLIAQSKLPLIATAKATP 213
+ R D+ +V ++A +QC R + PP+ + D L A+ KL L P
Sbjct: 119 KDERADKRLLHWRQVAISACEQCGRSTVPLIHPPLLLADWLKQTEAELKLVL------HP 172
Query: 214 VLNALTSLEKQASGLIIIGPEGDFTE 239
V L S K ++ +IGPEG ++
Sbjct: 173 VAEPLVSHAKPSTLAFLIGPEGGLSD 198
>B4D419_9BACT (tr|B4D419) Ribosomal RNA small subunit methyltransferase E
OS=Chthoniobacter flavus Ellin428 GN=CfE428DRAFT_3657
PE=3 SV=1
Length = 249
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 99/213 (46%), Gaps = 20/213 (9%)
Query: 40 LPRFFSETLPPSKGNVVRVQGD--EFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDR 97
+PRF+ + P N ++ D E H VLR+ DR LFNG+G I ++D+
Sbjct: 1 MPRFY---IAPHAWNPDKLALDHGETHHALDVLRMKAGDRATLFNGQGAEATVEIASVDK 57
Query: 98 TGIDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSSS 157
I AL + + + G KG D +VEK TELGA+ + PLL+ER+
Sbjct: 58 GKI---ALKKISVSKSEPIGCQIVLGQAIPKGKNMDLIVEKATELGAAGIVPLLSERTVV 114
Query: 158 ISEN-----RVDRLERVILAASKQC-QRLHEMIFKP--PVDI----DDLSHLIAQSKLPL 205
+ + ++ +RV + A+KQC Q +FKP P D + ++ S P
Sbjct: 115 RCDEGEALAKREKWQRVAIEAAKQCGQNWLPTVFKPQSPKDFFQSGEKFDLMLIASLQPD 174
Query: 206 IATAKATPVLNALTSLEKQASGLIIIGPEGDFT 238
K + +K A L+++GPEGDFT
Sbjct: 175 SRHVKEVLAEAGASGKKKPARVLVLVGPEGDFT 207
>Q1YUX3_9GAMM (tr|Q1YUX3) Ribosomal RNA small subunit methyltransferase E
OS=gamma proteobacterium HTCC2207 GN=GB2207_09001 PE=3
SV=1
Length = 245
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 102/207 (49%), Gaps = 13/207 (6%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
+PR F++ P S G + + G H++ LR+S + LFNG GG + ++
Sbjct: 3 IPRIFTDQ-PLSSGANLALSGSAARHLSSALRMSAGQEITLFNGLGGEFSATLTRATKSQ 61
Query: 100 IDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSS--- 156
+D V++ D I + L++ +G R DW+V+K TELG S +TPL +ER+
Sbjct: 62 VD-VSIGDFRDIDR-ESPLNLHLAIAVSRGERMDWIVQKATELGVSEITPLFSERTEVKL 119
Query: 157 --SISENRVDRLERVILAASKQCQRLHEMIFKPPVDIDD-LSHLIAQS-KLPLIATAKAT 212
E ++ ++V ++A +QCQR P + +D LS + +L L+ ++
Sbjct: 120 NGERLEKKLRHWQQVSISACEQCQRNLVPSINPALTLDQWLSQDTGNAEQLKLVLHHRSD 179
Query: 213 PVLNALTSLEKQASGLIIIGPEGDFTE 239
+L + S +++GPEG ++
Sbjct: 180 ---KSLAQHQPPKSACLLVGPEGGLSD 203
>F9Z9X1_ODOSD (tr|F9Z9X1) Ribosomal RNA small subunit methyltransferase E
OS=Odoribacter splanchnicus (strain ATCC 29572 / DSM
20712 / JCM 15291 / NCTC 10825 / 1651/6) GN=Odosp_2193
PE=3 SV=1
Length = 234
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 90/196 (45%), Gaps = 13/196 (6%)
Query: 49 PPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDM 108
P +G++ + DE H +VLRL + V L +GKG EG I + G +
Sbjct: 7 PDIEGDIYTLNADESRHCVRVLRLGAGEAVSLVDGKGTWYEGVIERAEVRGCEIRITDRR 66
Query: 109 EIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSSSISENRV---DR 165
E+ N LH+ T R +W++EKCTE+G +T L ++ SE +V +R
Sbjct: 67 ELYGRRNFHLHLAVA-PTKNIDRIEWMLEKCTEMGIDEITLL----HAAHSERKVVKEER 121
Query: 166 LERVILAASKQCQRLHEMIFKPPVDIDDLSHLIAQSKLP--LIATAKATPVLNALTSLEK 223
LE+VI+AA KQ + + P + D L+ + P IA
Sbjct: 122 LEKVIVAAMKQSLKAYLPRLNP---MTDFRQLVTSCREPHKFIAHCNEGDKKRLDEVYRP 178
Query: 224 QASGLIIIGPEGDFTE 239
+I+IGPEGDF+E
Sbjct: 179 GEDVVILIGPEGDFSE 194
>C1DI82_AZOVD (tr|C1DI82) Ribosomal RNA small subunit methyltransferase E
OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303)
GN=Avin_03190 PE=3 SV=1
Length = 239
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 101/207 (48%), Gaps = 18/207 (8%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
L RFF + P ++ + + ++ +VLRL+ D VQLF+G G G + G
Sbjct: 3 LSRFFIDA--PLALGLLDLPEAQAHYIGRVLRLAPGDAVQLFDGSGREFRG---ELVEVG 57
Query: 100 IDFVALTDMEIIPP-PNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSS-S 157
V + E +P + L + G G +G R DW ++K TELG + +TPLL+ER
Sbjct: 58 KKSVRVELREQLPGLAESPLRIHLGQGLSRGERMDWAIQKATELGVAEITPLLSERCEVR 117
Query: 158 ISENRVDR----LERVILAASKQCQRLHEMIFKPPVDIDD-LSHLIAQSKLPLIATAKAT 212
+ + R D+ +++ ++A +QC R PP ++D L + A+ KL L
Sbjct: 118 LKDERADKRLAHWQQIAISACEQCGRSVLPTIHPPAPLEDWLKGIEAELKLVL------H 171
Query: 213 PVLNALTSLEKQASGLIIIGPEGDFTE 239
P L S + AS +IGPEG +E
Sbjct: 172 PFAEPLASHARPASLAFLIGPEGGLSE 198
>M9YI32_AZOVI (tr|M9YI32) 16S ribosomal RNA methyltransferase RsmE OS=Azotobacter
vinelandii CA6 GN=AvCA6_03190 PE=4 SV=1
Length = 239
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 101/207 (48%), Gaps = 18/207 (8%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
L RFF + P ++ + + ++ +VLRL+ D VQLF+G G G + G
Sbjct: 3 LSRFFIDA--PLALGLLDLPEAQAHYIGRVLRLAPGDAVQLFDGSGREFRG---ELVEVG 57
Query: 100 IDFVALTDMEIIPP-PNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSS-S 157
V + E +P + L + G G +G R DW ++K TELG + +TPLL+ER
Sbjct: 58 KKSVRVELREQLPGLAESPLRIHLGQGLSRGERMDWAIQKATELGVAEITPLLSERCEVR 117
Query: 158 ISENRVDR----LERVILAASKQCQRLHEMIFKPPVDIDD-LSHLIAQSKLPLIATAKAT 212
+ + R D+ +++ ++A +QC R PP ++D L + A+ KL L
Sbjct: 118 LKDERADKRLAHWQQIAISACEQCGRSVLPTIHPPAPLEDWLKGIEAELKLVL------H 171
Query: 213 PVLNALTSLEKQASGLIIIGPEGDFTE 239
P L S + AS +IGPEG +E
Sbjct: 172 PFAEPLASHARPASLAFLIGPEGGLSE 198
>M9Y1M0_AZOVI (tr|M9Y1M0) 16S ribosomal RNA methyltransferase RsmE OS=Azotobacter
vinelandii CA GN=AvCA_03190 PE=4 SV=1
Length = 239
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 101/207 (48%), Gaps = 18/207 (8%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
L RFF + P ++ + + ++ +VLRL+ D VQLF+G G G + G
Sbjct: 3 LSRFFIDA--PLALGLLDLPEAQAHYIGRVLRLAPGDAVQLFDGSGREFRG---ELVEVG 57
Query: 100 IDFVALTDMEIIPP-PNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSS-S 157
V + E +P + L + G G +G R DW ++K TELG + +TPLL+ER
Sbjct: 58 KKSVRVELREQLPGLAESPLRIHLGQGLSRGERMDWAIQKATELGVAEITPLLSERCEVR 117
Query: 158 ISENRVDR----LERVILAASKQCQRLHEMIFKPPVDIDD-LSHLIAQSKLPLIATAKAT 212
+ + R D+ +++ ++A +QC R PP ++D L + A+ KL L
Sbjct: 118 LKDERADKRLAHWQQIAISACEQCGRSVLPTIHPPAPLEDWLKGIEAELKLVL------H 171
Query: 213 PVLNALTSLEKQASGLIIIGPEGDFTE 239
P L S + AS +IGPEG +E
Sbjct: 172 PFAEPLASHARPASLAFLIGPEGGLSE 198
>F4QSY5_9CAUL (tr|F4QSY5) Ribosomal RNA small subunit methyltransferase E
OS=Asticcacaulis biprosthecum C19 GN=ABI_42780 PE=3 SV=1
Length = 248
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 98/205 (47%), Gaps = 12/205 (5%)
Query: 43 FFSETLPP-SKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGID 101
F SET PP ++G V + D+ ++ V+RLS DD V +FNG+ G E R + G
Sbjct: 5 FISETTPPFAEGLSVILNPDQSRYLAAVMRLSVDDTVSIFNGRDG--EWGAR-LSEVGKK 61
Query: 102 FVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSSSISEN 161
V L +E P T +K +++VEK TELGA ++ LLT R ++ S
Sbjct: 62 AVKLDLIEQTRPQPTGQGPILAVALIKRSALEYIVEKATELGAGTIQ-LLTTRRTNASHT 120
Query: 162 RVDRLERVILAASKQCQRLHEMIFKPPVDIDDLSHLIAQSKLPL-------IATAKATPV 214
V+RL + +++Q +RL PV +D A +L T + P+
Sbjct: 121 NVERLVSIAKESAEQTERLDVPEILAPVKLDRFLAAAAFDRLIFGDENSTHEGTRETLPL 180
Query: 215 LNALTSLEKQASGLIIIGPEGDFTE 239
L AL + +I+IGPEG F +
Sbjct: 181 LQALKTTAAVERSVILIGPEGGFDD 205
>B9E044_CLOK1 (tr|B9E044) Ribosomal RNA small subunit methyltransferase E
OS=Clostridium kluyveri (strain NBRC 12016) GN=CKR_0818
PE=3 SV=1
Length = 251
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 91/179 (50%), Gaps = 8/179 (4%)
Query: 54 NVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPP 113
N ++GD+ H+ KVLRL D+V + N G G I +++R + + ++++
Sbjct: 14 NTAHIKGDDLKHIHKVLRLKIGDKVNINNCHGKEFLGVIDSIEREKVTVNIVEELKLYNE 73
Query: 114 PNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSSSISE----NRVDRLERV 169
++++F G K + D +V+K TELG +TP++T R + + RVDR ++
Sbjct: 74 SPLKVYLFQGLP--KSSKMDLVVQKATELGIWEITPIITNRVAIKGDFKEFKRVDRWNKI 131
Query: 170 ILAASKQCQRLHEMIFKPPVDIDDLSHLIAQSKLPLI--ATAKATPVLNALTSLEKQAS 226
L A KQC+R KPP+ ++L ++ L ++ K+ + + S+E + S
Sbjct: 132 ALEACKQCKRSIIPAVKPPIYFEELLKYLSNMDLIVVPYEMEKSIGIKKVIDSIEYRDS 190
>A5N6M5_CLOK5 (tr|A5N6M5) Ribosomal RNA small subunit methyltransferase E
OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 /
NCIMB 10680) GN=CKL_0905 PE=3 SV=1
Length = 251
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 91/179 (50%), Gaps = 8/179 (4%)
Query: 54 NVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPP 113
N ++GD+ H+ KVLRL D+V + N G G I +++R + + ++++
Sbjct: 14 NTAHIKGDDLKHIHKVLRLKIGDKVNINNCHGKEFLGVIDSIEREKVTVNIVEELKLYNE 73
Query: 114 PNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSSSISE----NRVDRLERV 169
++++F G K + D +V+K TELG +TP++T R + + RVDR ++
Sbjct: 74 SPLKVYLFQGLP--KSSKMDLVVQKATELGIWEITPIITNRVAIKGDFKEFKRVDRWNKI 131
Query: 170 ILAASKQCQRLHEMIFKPPVDIDDLSHLIAQSKLPLI--ATAKATPVLNALTSLEKQAS 226
L A KQC+R KPP+ ++L ++ L ++ K+ + + S+E + S
Sbjct: 132 ALEACKQCKRSIIPAVKPPIYFEELLKYLSNMDLIVVPYEMEKSIGIKKVIDSIEYRDS 190
>J2SWP0_9PSED (tr|J2SWP0) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas sp. GM55 GN=PMI31_03932 PE=3 SV=1
Length = 239
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 99/205 (48%), Gaps = 14/205 (6%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
L RFF + P S G + + + +VLR++ D +QLF+G G + + +
Sbjct: 3 LSRFFIDA-PLSTGEHELPEAQAHY-IGRVLRMAEGDALQLFDGSGHEFRATLVEVGKKR 60
Query: 100 IDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSS-SI 158
+ V D + L + G G +G R DW ++K TELGA+ +TP+ TER +
Sbjct: 61 V--VVQIDESFAGQIESPLRIHLGQGLSRGERMDWAIQKATELGATEITPIFTERCEVRL 118
Query: 159 SENRVDR----LERVILAASKQCQRLHEMIFKPPVDIDDLSHLIAQSKLPLIATAKATPV 214
+ R D+ +V ++A +QC R + PP+ + D AQ++L L+ PV
Sbjct: 119 KDERADKRLLHWRQVAISACEQCGRSRVPVIHPPMLLADWLKQ-AQAELKLV----LHPV 173
Query: 215 LNALTSLEKQASGLIIIGPEGDFTE 239
L S K ++ +IGPEG ++
Sbjct: 174 AEPLVSHAKPSNLAFLIGPEGGLSD 198
>K2QJP0_9FLAO (tr|K2QJP0) Ribosomal RNA small subunit methyltransferase E
OS=Galbibacter sp. ck-I2-15 GN=I215_10168 PE=3 SV=1
Length = 239
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 88/181 (48%), Gaps = 6/181 (3%)
Query: 61 DEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPPPNTQLHV 120
+E H+ KVLR + D + + NGKG + E I D V L P +LH+
Sbjct: 21 EESRHIHKVLRKTIGDSLHITNGKGWIFEAKILASDAKQCS-VQLLSSTFKNPRRYRLHM 79
Query: 121 FSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSSSISENRVDRLERVILAASKQCQRL 180
T R +W +EK TE+G +TP++ + S +++R E++I +A+KQ
Sbjct: 80 AVA-PTKMNDRFEWFLEKATEIGIDEITPIICDHSER-KVVKLERYEKIIQSAAKQSLNP 137
Query: 181 HEMIFKPPVDIDDLSHLIAQSKLP---LIATAKATPVLNALTSLEKQASGLIIIGPEGDF 237
+ + PP DL +++ + IA + ++EKQ S LI+IGPEGDF
Sbjct: 138 YLPVLHPPQSFSDLIGSVSKQAVNEQLFIAHCEDQQKQTLQQAIEKQQSALILIGPEGDF 197
Query: 238 T 238
+
Sbjct: 198 S 198
>K5XGK5_9PSED (tr|K5XGK5) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas sp. Chol1 GN=C211_10173 PE=3 SV=1
Length = 238
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 92/180 (51%), Gaps = 13/180 (7%)
Query: 65 HMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPPPNTQLHVFSGF 124
++ +VLRLSN VQLF+G G G + + + + V L ++ P + L + G
Sbjct: 26 YIGRVLRLSNGSAVQLFDGSGQEYLGELVEVGKKQVR-VELRQ-QLAGQPESPLRIHLGQ 83
Query: 125 GTLKGGRADWLVEKCTELGASSVTPLLTERSS-SISENRVDR----LERVILAASKQCQR 179
G +G R DW ++K TELG + +TPL++ER +++ R D+ ++ ++A +QC R
Sbjct: 84 GLSRGERMDWAIQKATELGVAQITPLISERCEVRLNDERADKRLAHWRQIAISACEQCGR 143
Query: 180 LHEMIFKPPVDIDDLSHLIAQSKLPLIATAKATPVLNALTSLEKQASGLIIIGPEGDFTE 239
PP + D + A+ KL L PV LTS + + +IGPEG +E
Sbjct: 144 SVVPTIHPPQLLGDWLPVEAELKLVL------HPVAAPLTSHAQPRTLAFLIGPEGGLSE 197
>I6ZB69_PSEST (tr|I6ZB69) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas stutzeri DSM 10701 GN=PSJM300_01700 PE=3
SV=1
Length = 238
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 88/181 (48%), Gaps = 15/181 (8%)
Query: 65 HMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPP-PNTQLHVFSG 123
+M +VLRL+ VQLF+G+G G + G V + E +P ++L + G
Sbjct: 26 YMARVLRLAAGAAVQLFDGRGQEYRG---ELIEVGKKAVRVQLHEALPGLAESRLQIHLG 82
Query: 124 FGTLKGGRADWLVEKCTELGASSVTPLLTER-----SSSISENRVDRLERVILAASKQCQ 178
G +G R DW ++K TELGA+ +TP+++ER ++ R+ ++ ++A +QC
Sbjct: 83 QGLSRGERMDWAIQKATELGATQITPVISERCEVRLKDERADKRLTHWRQIAISACEQCG 142
Query: 179 RLHEMIFKPPVDIDDLSHLIAQSKLPLIATAKATPVLNALTSLEKQASGLIIIGPEGDFT 238
R + PP + D + A KL L PV L S A+ +IGPEG
Sbjct: 143 RSVIPVIHPPQLLADWLAIEADLKLVL------HPVAEPLESHAAPATLAFLIGPEGGLN 196
Query: 239 E 239
+
Sbjct: 197 D 197
>Q0G3C3_9RHIZ (tr|Q0G3C3) Ribosomal RNA small subunit methyltransferase E
OS=Fulvimarina pelagi HTCC2506 GN=FP2506_15784 PE=3 SV=1
Length = 295
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 92/179 (51%), Gaps = 11/179 (6%)
Query: 65 HMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPPPNTQLHVFSGF 124
++ VLR D V LFNG+ G +R + +D + + + PP ++ F+
Sbjct: 78 YLLNVLRKDEGDSVLLFNGQDGEWRAELRKASKKKLDLFPVAKVRVQQPPYDLIYCFA-- 135
Query: 125 GTLKGGRADWLVEKCTELGASSVTPLLTERSSSISENRVDRLERVILAASKQCQRLHEMI 184
LK GR D++V+K E+GA + P+LT R+ + R D++ + A++QC L
Sbjct: 136 -PLKVGRLDYMVQKAVEMGAGILQPVLTHRTQN-HRVRTDKIRANAIEAAEQCGILAIPE 193
Query: 185 FKPPVDIDDLSHLIAQSKLPLIATAK----ATPVLNALTSLEKQASGLIIIGPEGDFTE 239
+ PV DDL + S +PL+ + A+P+ +AL L GL IIGPEG F++
Sbjct: 194 CREPVKFDDLLSNWSSS-IPLVFCDEKMDAASPI-DALRELGDGRKGL-IIGPEGGFSQ 249
>J3FQQ2_9PSED (tr|J3FQQ2) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas sp. GM33 GN=PMI26_03420 PE=3 SV=1
Length = 239
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 98/206 (47%), Gaps = 16/206 (7%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
L RFF + P S G + + +++VLR++ D +QLF+G G + + +
Sbjct: 3 LSRFFIDA-PLSTGEHELPEAQAHY-ISRVLRMAEGDALQLFDGSGQEFRARLVEVGKKR 60
Query: 100 IDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSS-SI 158
+ V D + L + G G +G R DW ++K TELG S +TP+ TER +
Sbjct: 61 V--VVQIDESFTGQIESPLQIHLGQGLSRGERMDWAIQKATELGVSEITPIFTERCEVRL 118
Query: 159 SENRVDR----LERVILAASKQCQRLHEMIFKPPVDIDD-LSHLIAQSKLPLIATAKATP 213
+ R D+ +V ++A +QC R + PP+ + D L A+ KL L P
Sbjct: 119 KDERADKRLLHWRQVAISACEQCGRSRVPLIHPPLLLADWLKQTQAELKLVL------HP 172
Query: 214 VLNALTSLEKQASGLIIIGPEGDFTE 239
V L S K +S +IGPEG ++
Sbjct: 173 VAEPLVSHAKPSSLAFLIGPEGGLSD 198
>B3PR91_RHIE6 (tr|B3PR91) Ribosomal RNA small subunit methyltransferase E
OS=Rhizobium etli (strain CIAT 652) GN=RHECIAT_CH0000889
PE=3 SV=1
Length = 245
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 98/205 (47%), Gaps = 14/205 (6%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
+ R F + P S G VV ++F ++ VLR+ D + LFNG+ G + + R
Sbjct: 7 MQRLFVDA-PLSAGAVVEASAEQFNYLANVLRMEADAEILLFNGRDGEWKASLSFPTRKR 65
Query: 100 IDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSSSIS 159
I A+ + P P LH F LK GR D+LV+K E+GA + P++T+
Sbjct: 66 ILLTAIEETRPQPLP-CDLHYL--FAPLKVGRMDYLVQKAVEMGAGLLQPVMTQHVQGKI 122
Query: 160 ENRVDRLERVILAASKQCQRLHEMIFKPPVDIDDLSHLIAQSKLPLI-----ATAKATPV 214
N +D+L ++ A++QC L PV + DL + + + A PV
Sbjct: 123 TN-LDKLRANVVEAAEQCGVLGIPDVAEPVKLSDLLDRWPKERRIIYCDEGDAGQNPLPV 181
Query: 215 LNALTSLEKQASGLIIIGPEGDFTE 239
L+A+ ++ +++GPEG F+E
Sbjct: 182 LSAI----RERHLALLVGPEGGFSE 202
>H7EV63_PSEST (tr|H7EV63) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas stutzeri ATCC 14405 = CCUG 16156
GN=PstZobell_09392 PE=3 SV=1
Length = 238
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 90/181 (49%), Gaps = 15/181 (8%)
Query: 65 HMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPPP-NTQLHVFSG 123
++++VLRLS+ VQLF+G G G + G V + E + + L + G
Sbjct: 26 YISRVLRLSSGSAVQLFDGSGAEFRG---ELAEVGKKTVTVELQEYLAGMLESPLRIHLG 82
Query: 124 FGTLKGGRADWLVEKCTELGASSVTPLLTERSS-SISENRVDR----LERVILAASKQCQ 178
G +G R DW ++K TELG + +TP+++ER +++ RVD+ ++ ++A +QC
Sbjct: 83 QGLSRGERMDWAIQKATELGVAQITPIVSERCEVRLNDERVDKRLAHWRQIAISACEQCG 142
Query: 179 RLHEMIFKPPVDIDDLSHLIAQSKLPLIATAKATPVLNALTSLEKQASGLIIIGPEGDFT 238
R + PV + D L A KL L PV L S K + +IGPEG +
Sbjct: 143 RSVLPLIHAPVSLRDWLTLEADLKLVL------HPVAEPLVSHAKPQTLAFLIGPEGGLS 196
Query: 239 E 239
E
Sbjct: 197 E 197
>G8Q2L2_PSEFL (tr|G8Q2L2) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas fluorescens F113 GN=PSF113_5510 PE=3 SV=1
Length = 263
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 100/206 (48%), Gaps = 16/206 (7%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
L RFF + P S G+ + + +++VLR++ D VQ+F+G G G + + +
Sbjct: 27 LSRFFIDA-PLSLGDHELPEAQAHY-ISRVLRMAEGDAVQVFDGSGQEFRGTLAEVGKKR 84
Query: 100 IDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSS-SI 158
+ D + + L + G G +G R DW ++K TELG S +TP+ +ER +
Sbjct: 85 VRVQ--LDEQFAGQAESPLRIHLGQGLSRGERMDWAIQKATELGVSEITPIFSERCEVRL 142
Query: 159 SENRVDR----LERVILAASKQCQRLHEMIFKPPVDIDD-LSHLIAQSKLPLIATAKATP 213
+ R D+ +V ++A +QC R + PP+ + D L A KL L P
Sbjct: 143 KDERADKRLLHWRQVAISACEQCGRSSVPVIHPPLLLADWLKQTEAGLKLVL------HP 196
Query: 214 VLNALTSLEKQASGLIIIGPEGDFTE 239
V L S +K ++ +IGPEG ++
Sbjct: 197 VAEPLVSHDKPSTLAFLIGPEGGLSD 222
>K1Z8Q9_9BACT (tr|K1Z8Q9) Ribosomal RNA small subunit methyltransferase E
OS=uncultured bacterium GN=ACD_74C00140G0001 PE=3 SV=1
Length = 263
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 92/195 (47%), Gaps = 14/195 (7%)
Query: 53 GNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNM--DRTGIDFVALT-DME 109
G + G E H+ VLRLS D + F+G G + I + DR + T D+
Sbjct: 15 GETALLTGPEAHHLRTVLRLSPGDPITFFDGTGARYQARIERILKDRVTATIIGQTRDL- 73
Query: 110 IIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTER--SSSISENRVDRLE 167
PP +LH+ G LKG + D +++K TELG +++P +E + ++DR +
Sbjct: 74 ---PPKVRLHL--GQALLKGQKMDLILQKATELGVEAISPFYSEHGIHKQPRDTQMDRWQ 128
Query: 168 RVILAASKQCQRLHEMIFKPPVDIDDLSHLIAQSKLPLIATAKAT--PVLNALTSLEKQA 225
R+++ A KQC R P ++ DL + LI T + + L S K
Sbjct: 129 RIVIEACKQCDRATPPEIHDPREVTDLITQLPPCDARLIFWEHETRHTLKDVLASHNKDC 188
Query: 226 -SGLIIIGPEGDFTE 239
S L ++GPEG F+E
Sbjct: 189 RSVLFLLGPEGGFSE 203
>J2MEF7_9PSED (tr|J2MEF7) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas sp. GM17 GN=PMI20_06008 PE=3 SV=1
Length = 239
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 88/181 (48%), Gaps = 14/181 (7%)
Query: 65 HMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPPPNTQLHVFSGF 124
++ +VLR++ D +QLF+G G G + + + + V D + L + G
Sbjct: 26 YIGRVLRMAEGDALQLFDGSGNEFRGTLLEVGKKRV--VVRLDESFAGQVESPLQIHLGQ 83
Query: 125 GTLKGGRADWLVEKCTELGASSVTPLLTERSS-SISENRVDR----LERVILAASKQCQR 179
G +G R DW ++K TELG + +TP+ +ER + + R D+ +V ++A +QC R
Sbjct: 84 GLSRGERMDWAIQKATELGVNEITPIFSERCEVRLKDERADKRLAHWRQVAVSACEQCGR 143
Query: 180 LHEMIFKPPVDIDD-LSHLIAQSKLPLIATAKATPVLNALTSLEKQASGLIIIGPEGDFT 238
+ PPV + D + A KL L PV L S K A+ +IGPEG +
Sbjct: 144 SRVPVIHPPVLLADWIKQTQADLKLVL------HPVAEPLVSHAKPATLAFLIGPEGGLS 197
Query: 239 E 239
+
Sbjct: 198 D 198
>J2XTR7_9PSED (tr|J2XTR7) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas chlororaphis subsp. aureofaciens 30-84
GN=Pchl3084_5537 PE=3 SV=1
Length = 239
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 87/181 (48%), Gaps = 14/181 (7%)
Query: 65 HMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPPPNTQLHVFSGF 124
++ +VLR++ D +QLF+G G G + + + + V D + L + G
Sbjct: 26 YIGRVLRMAEGDALQLFDGSGNEFRGTLLEVGKKRV--VVRLDENFAGQVESPLQIHLGQ 83
Query: 125 GTLKGGRADWLVEKCTELGASSVTPLLTER-----SSSISENRVDRLERVILAASKQCQR 179
G +G R DW ++K TELG + +TP+ +ER ++ R+ +V ++A +QC R
Sbjct: 84 GLSRGERMDWAIQKATELGVNEITPIFSERCEVRLKDERADKRLAHWRQVAVSACEQCGR 143
Query: 180 LHEMIFKPPVDIDD-LSHLIAQSKLPLIATAKATPVLNALTSLEKQASGLIIIGPEGDFT 238
+ PPV + D + A KL L PV L S K A+ +IGPEG +
Sbjct: 144 SRVPVIHPPVLLADWIKQTQADLKLVL------HPVAEPLVSHAKPATLAFLIGPEGGLS 197
Query: 239 E 239
+
Sbjct: 198 D 198
>I4XXG7_9PSED (tr|I4XXG7) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas chlororaphis O6 GN=PchlO6_5817 PE=3 SV=1
Length = 239
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 87/181 (48%), Gaps = 14/181 (7%)
Query: 65 HMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPPPNTQLHVFSGF 124
++ +VLR++ D +QLF+G G G + + + + V D + L + G
Sbjct: 26 YIGRVLRMAEGDALQLFDGSGNEFRGTLLEVGKKRV--VVRLDESFAGQVESPLQIHLGQ 83
Query: 125 GTLKGGRADWLVEKCTELGASSVTPLLTER-----SSSISENRVDRLERVILAASKQCQR 179
G +G R DW ++K TELG + +TP+ +ER ++ R+ +V ++A +QC R
Sbjct: 84 GLSRGERMDWAIQKATELGVNEITPIFSERCEVRLKDERADKRLAHWRQVAVSACEQCGR 143
Query: 180 LHEMIFKPPVDIDD-LSHLIAQSKLPLIATAKATPVLNALTSLEKQASGLIIIGPEGDFT 238
+ PPV + D + A KL L PV L S K A+ +IGPEG +
Sbjct: 144 SRVPVIHPPVLLADWIKQTQADLKLVL------HPVAEPLVSHAKPATLAFLIGPEGGLS 197
Query: 239 E 239
+
Sbjct: 198 D 198
>L0F9A3_DESDL (tr|L0F9A3) Ribosomal RNA small subunit methyltransferase E
OS=Desulfitobacterium dichloroeliminans (strain LMG
P-21439 / DCA1) GN=Desdi_3009 PE=3 SV=1
Length = 245
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 94/193 (48%), Gaps = 9/193 (4%)
Query: 54 NVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPP 113
NV +QG E H+ +VLRLS D + F+ G + + + + L
Sbjct: 12 NVFWLQGPERDHLVRVLRLSPGDEIIGFDNSGAEYKAVVNTVGDHSVTCGILEQDYPEVE 71
Query: 114 PNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERS-----SSISENRVDRLER 168
TQ+++ +G KG + +W+++K TELG + + PL T+R+ + +++RV+R ++
Sbjct: 72 ARTQVYLVTGLS--KGEKMEWVIQKGTELGMAGLIPLRTKRAVMKLEGNKAKDRVERWQK 129
Query: 169 VILAASKQCQRLHEMIFKPPVDIDDLSHLIAQSKLPLI--ATAKATPVLNALTSLEKQAS 226
+ A+KQ R+ E P D +L L+ + +I K+ + + L Q
Sbjct: 130 ICGEAAKQSHRVRESKVYPVADWKELKDLLPPTTQWIIPYENEKSMTLRSVLKEFNPQEP 189
Query: 227 GLIIIGPEGDFTE 239
I+IGPEG F E
Sbjct: 190 IAILIGPEGGFEE 202
>E6X433_CELAD (tr|E6X433) Ribosomal RNA small subunit methyltransferase E
OS=Cellulophaga algicola (strain DSM 14237 / IC166 /
ACAM 630) GN=Celal_3101 PE=3 SV=1
Length = 238
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 90/184 (48%), Gaps = 11/184 (5%)
Query: 61 DEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMD--RTGIDFVALTDMEIIPPPNTQL 118
+E H+ KVLR D + L NGKG L E I D + + + T + P L
Sbjct: 21 EESKHIVKVLRKKEGDILHLTNGKGYLFEAEILRADLRKCAVKIIKETYHKKNSPA---L 77
Query: 119 HVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSSSISENRVDRLERVILAASKQCQ 178
H+ T R +W +EK TE+G + +TP++ + S ++DR+E+V+ AA KQ
Sbjct: 78 HLVVA-PTKMNDRYEWFLEKATEIGVTEITPIICDNSER-KVLKLDRMEKVLQAAMKQSL 135
Query: 179 RLHEMIFKPPVD----IDDLSHLIAQSKLPLIATAKATPVLNALTSLEKQASGLIIIGPE 234
+ H+ I P+ I+ + + + IA + T ++ L + LI+IGPE
Sbjct: 136 QFHKPILNEPISAKTFIEQNNPTHQEEQQFFIAHCEETEKIDLKERLIPSHNALILIGPE 195
Query: 235 GDFT 238
GDF+
Sbjct: 196 GDFS 199
>Q1I3V5_PSEE4 (tr|Q1I3V5) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas entomophila (strain L48) GN=PSEEN5048
PE=3 SV=1
Length = 239
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 91/181 (50%), Gaps = 14/181 (7%)
Query: 65 HMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPPPNTQLHVFSGF 124
++ +VLR++ D VQLF+G G G + + + + V+L D + + LHV G
Sbjct: 26 YIGRVLRMAPGDAVQLFDGSGQEYLGQLLEVGKKTVR-VSL-DQALPGQAESSLHVHLGQ 83
Query: 125 GTLKGGRADWLVEKCTELGASSVTPLLTER-----SSSISENRVDRLERVILAASKQCQR 179
G +G R DW ++K TELG + +TP+++ER ++ R+ +V ++A +QC R
Sbjct: 84 GLSRGERMDWAIQKATELGVNEITPIVSERCEVRLKDERADKRLAHWRQVAISACEQCGR 143
Query: 180 LHEMIFKPPVDIDD-LSHLIAQSKLPLIATAKATPVLNALTSLEKQASGLIIIGPEGDFT 238
+ PPV + + + A KL L PV LTS K A +IGPEG
Sbjct: 144 SSVPVIHPPVTLAEWIKGSDADLKLVL------HPVAAPLTSHAKPARLAFLIGPEGGLN 197
Query: 239 E 239
+
Sbjct: 198 D 198
>R6CMF7_9CLOT (tr|R6CMF7) Ribosomal RNA small subunit methyltransferase E
OS=Clostridium sp. CAG:242 GN=BN558_00138 PE=4 SV=1
Length = 241
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 105/211 (49%), Gaps = 23/211 (10%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
+PRFF++T+ G + GD+ H+ KVLR+ + + + + KG I ++
Sbjct: 1 MPRFFTQTISREGGYIT---GDDAKHIAKVLRMKIGEELTVCDTKGYDYHCMIESLSDKE 57
Query: 100 IDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSSSIS 159
+ L+ E P+ ++H++ KG + + +++K ELG S+TP++T R S
Sbjct: 58 VTLKVLSAEESQSEPSVKVHLYQAMP--KGDKLELIIQKAVELGVDSITPVMTRRCVSKP 115
Query: 160 E-----NRVDRLERVILAASKQCQRLHEMIFKPPVDIDDLSHLIAQSKLPLI----ATAK 210
+ +++R R+ L A+KQ R KP +++++ +A++ P++ ATA
Sbjct: 116 DAKSMAKKLERYNRIALEAAKQSGRGKIPQVKPLLELNEALDEMAETSCPILFYENATAP 175
Query: 211 ATPVLNALTSLEKQASGLI--IIGPEGDFTE 239
A V++ QA I +IG EG F E
Sbjct: 176 AKEVID-------QAGQEIAVLIGSEGGFDE 199
>J1ABL9_9FLAO (tr|J1ABL9) Ribosomal RNA small subunit methyltransferase E
OS=Flavobacterium sp. F52 GN=FF52_20922 PE=3 SV=1
Length = 234
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 94/187 (50%), Gaps = 20/187 (10%)
Query: 61 DEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIR--NMDRTGIDFVALTDMEIIPPPNTQL 118
+E H+ KVLR + D + + NG G L E I + ++ ++ +++ + E P L
Sbjct: 21 EESRHIIKVLRKKDGDILHVTNGSGLLFETQITLASDNKCTVEVLSIKNAE---KPKFHL 77
Query: 119 HVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSSSISENRVDRLERVILAASKQCQ 178
H+ T R +W +EK TE+G +TP+ +RS NR DR E++IL+A KQC
Sbjct: 78 HLAVA-PTKMNDRFEWFLEKATEIGIQEITPIFCDRSERKVINR-DRFEKIILSAMKQCN 135
Query: 179 -----RLHEMI-FKPPVDIDDLSHLIAQSKLPLIATAKATPVLNALTSLEKQASGLIIIG 232
+L+E I FK + Q+ L LIA + T + L+ I+IG
Sbjct: 136 ETFLPKLNEAISFKEFMK-------QKQNGLQLIAHCEETDKKSLKEVLKPNKDVTILIG 188
Query: 233 PEGDFTE 239
PEGDF+E
Sbjct: 189 PEGDFSE 195
>J2WRQ6_9PSED (tr|J2WRQ6) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas sp. GM78 GN=PMI35_05173 PE=3 SV=1
Length = 239
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 98/206 (47%), Gaps = 16/206 (7%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
L RFF + P S G + + + +VLR++ D +QLF+G G G + + +
Sbjct: 3 LSRFFIDA-PLSTGEHELPEAQAHY-IGRVLRMAEGDALQLFDGSGHEFRGTLVEVGKKR 60
Query: 100 IDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSS-SI 158
+ V + + + L + G G +G R DW ++K TELG + +TP+ +ER +
Sbjct: 61 V--VVQINEQFAGQVESPLQIHLGQGLSRGERMDWAIQKATELGVTQITPIFSERCEVRL 118
Query: 159 SENRVDR----LERVILAASKQCQRLHEMIFKPPVDIDD-LSHLIAQSKLPLIATAKATP 213
+ R D+ +V ++A +QC R + PPV + D L A+ KL L P
Sbjct: 119 KDERADKRLLHWRQVAISACEQCGRSRVPVIHPPVLLADWLKQTEAELKLVL------HP 172
Query: 214 VLNALTSLEKQASGLIIIGPEGDFTE 239
V L S K + +IGPEG ++
Sbjct: 173 VAEPLVSHAKPGTLAFLIGPEGGLSD 198
>H1NN48_9SPHI (tr|H1NN48) Ribosomal RNA small subunit methyltransferase E
OS=Niabella soli DSM 19437 GN=NiasoDRAFT_2762 PE=3 SV=1
Length = 236
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 101/203 (49%), Gaps = 11/203 (5%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
LP F+ P + ++V + + H+ +VLR+ +R+ L +G G L+ + N +
Sbjct: 3 LPFFYINNYSPGQKSMVLDENNSR-HIVQVLRMETGERLHLTDGCGHLLTAIVTNPHKKH 61
Query: 100 IDFVALTDMEIIPPPNTQLHVFSGFGTLKGG-RADWLVEKCTELGASSVTPLLTERSSSI 158
+ VA+ E IPP + Q+ + LK R +W +EK TE+G ++ PL+T+R+ I
Sbjct: 62 CE-VAIEHSEFIPPAHPQITI--AIALLKNASRFEWFLEKATEIGVHAIVPLITDRTEKI 118
Query: 159 SENRVDRLERVILAASKQCQRLHEMIFKPPVDIDDLSHLIAQSKLPLIATAKATPVLNAL 218
+ +RL+ ++++A Q +++ P D + P A A
Sbjct: 119 -RTKTERLQNILVSALLQSRQVWLPQLPEPAKFTDFMNGPEWQTTPQKFIAHCLEHEKA- 176
Query: 219 TSLEKQA---SGLIIIGPEGDFT 238
SL +Q+ + +++IGPEGDFT
Sbjct: 177 -SLRQQSINNNTILLIGPEGDFT 198
>A9LGR8_9BACT (tr|A9LGR8) Ribosomal RNA small subunit methyltransferase E
OS=uncultured planctomycete 5H12 GN=5H12_27 PE=3 SV=1
Length = 239
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 94/201 (46%), Gaps = 11/201 (5%)
Query: 42 RFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGID 101
RFF + P + ++ G+ H+ V+R+ D V LF+G G I D+ +
Sbjct: 4 RFF---INPIATEICQISGESAHHIVNVMRMKTGDSVILFDGTNREFTGIITETDKKVVT 60
Query: 102 FVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERS-SSISE 160
+ +E+ + F KG R +++EK ELG S+ PL T+RS ++
Sbjct: 61 IAIQSVIEVSREQKITSTLAVAFP--KGDRQKFMIEKLVELGVDSLVPLQTQRSVVNVQP 118
Query: 161 NRVDRLERVILAASKQCQRLHEMIFKPPVDIDDLSHLIAQSKLPLIATAKATPVLNALTS 220
+++++R I+ ASKQC R M KP V +D H Q + P L +
Sbjct: 119 RSLEKIQRWIVEASKQCGRNQLMQIKPTVSFNDWIH--GQREGPRFVAHPHDMRLTITDA 176
Query: 221 L-EKQASGLI--IIGPEGDFT 238
+ + Q +G++ +GPEG FT
Sbjct: 177 IGQAQRAGVVSLTVGPEGGFT 197
>F6AFX6_PSEF1 (tr|F6AFX6) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas fulva (strain 12-X) GN=Psefu_0330 PE=3
SV=1
Length = 239
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 90/181 (49%), Gaps = 14/181 (7%)
Query: 65 HMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPPPNTQLHVFSGF 124
++ +VLR + D VQLF+G G G + + + + V L + + + LH+ G
Sbjct: 26 YIGRVLRHAAGDAVQLFDGSGQEFLGELIEVGKKSVR-VELRE-QFAGQAESPLHIHLGQ 83
Query: 125 GTLKGGRADWLVEKCTELGASSVTPLLTER-----SSSISENRVDRLERVILAASKQCQR 179
G +G R DW ++K TELGA ++P+++ R ++ R+ +V ++A +QC R
Sbjct: 84 GLSRGERMDWAIQKATELGAQVISPIISARCEVRLKDERTDKRMAHWRQVAISACEQCGR 143
Query: 180 LHEMIFKPPVDIDD-LSHLIAQSKLPLIATAKATPVLNALTSLEKQASGLIIIGPEGDFT 238
+ PP+ + D L A KL L PV LTS K AS +IGPEG T
Sbjct: 144 SVIPVIHPPIVLGDWLQQTSADLKLVL------HPVAEPLTSHAKPASLAFLIGPEGGLT 197
Query: 239 E 239
+
Sbjct: 198 D 198
>R6F2X0_9PORP (tr|R6F2X0) Ribosomal RNA small subunit methyltransferase E
OS=Odoribacter splanchnicus CAG:14 GN=BN493_00180 PE=4
SV=1
Length = 234
Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 89/194 (45%), Gaps = 9/194 (4%)
Query: 49 PPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDM 108
P +G++ + DE H +VLRL + V L +GKG EG I + G +
Sbjct: 7 PDIEGDIYTLNADESRHCVRVLRLGAGEAVSLVDGKGTWYEGVIERAEVRGCEIRITDRR 66
Query: 109 EIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSSSISENRV---DR 165
E+ N LH+ T R +W++EKCTE+G +T L ++ SE +V +R
Sbjct: 67 ELYGRRNFHLHLAVA-PTKNIDRIEWMLEKCTEMGIDEITLL----HAAHSERKVVKEER 121
Query: 166 LERVILAASKQCQRLHEMIFKPPVDIDDLSHLIAQSKLPLIATAKATPVLNALTSLEKQA 225
LE+VI+AA KQ + + P D L ++ IA
Sbjct: 122 LEKVIVAAMKQSLKAYLPRLNPMTDFRQLVTSCRETH-KFIAHCNEGDKKRLDEVYRPGE 180
Query: 226 SGLIIIGPEGDFTE 239
+ +I+IGPEGDF+E
Sbjct: 181 NVVILIGPEGDFSE 194
>K0PT59_9RHIZ (tr|K0PT59) Ribosomal RNA small subunit methyltransferase E
OS=Rhizobium mesoamericanum STM3625 GN=BN77_1686 PE=3
SV=1
Length = 245
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 102/205 (49%), Gaps = 14/205 (6%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
+ R F + P + G V D F ++ VLR+++ ++ +FNG+ G + + R
Sbjct: 7 MQRLFVDA-PLTAGATVETTADNFNYLANVLRMTDGAQLLIFNGRDGEWKARLTFPTRKR 65
Query: 100 IDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSSSIS 159
I VA P P ++LH F LK GR D+LV+K E+GA ++ P++T+
Sbjct: 66 IVLVAEEQTRAQPAP-SELHYL--FAPLKVGRLDYLVQKAVEMGAGTLRPVMTQHVQGKI 122
Query: 160 ENRVDRLERVILAASKQCQRLHEMIFKPPVDIDDLSHLIAQSKLPLI-----ATAKATPV 214
N +D+L ++ A++QC LH PV + DL + + A PV
Sbjct: 123 TN-LDKLRANVIEAAEQCGILHIPDVAEPVRLFDLLEQWPSDRRIIYCDEGDAGQNPMPV 181
Query: 215 LNALTSLEKQASGLIIIGPEGDFTE 239
L+ ++ E++ + +++GPEG F+E
Sbjct: 182 LSEIS--ERKLA--LLVGPEGGFSE 202
>K9NSW5_9PSED (tr|K9NSW5) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas sp. UW4 GN=rsmE2 PE=3 SV=1
Length = 239
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 97/206 (47%), Gaps = 16/206 (7%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
L RFF + P S G + + +++VLR++ D +QLF+G G + + +
Sbjct: 3 LSRFFIDA-PLSTGEHELPEAQAHY-ISRVLRMAEGDALQLFDGSGQEFRARLVEVGKKR 60
Query: 100 IDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSS-SI 158
+ V D + L + G G +G R DW ++K TELG S +TP+ TER +
Sbjct: 61 V--VVQIDESFAGQIESPLQIHLGQGLSRGERMDWAIQKATELGVSEITPIFTERCEVRL 118
Query: 159 SENRVDR----LERVILAASKQCQRLHEMIFKPPVDIDD-LSHLIAQSKLPLIATAKATP 213
+ R D+ +V ++A +QC R + PP+ + D L A+ KL L P
Sbjct: 119 KDERADKRLLHWRQVAISACEQCGRSRVPVIHPPLLLADWLKQTQAELKLVL------HP 172
Query: 214 VLNALTSLEKQASGLIIIGPEGDFTE 239
V L S K + +IGPEG ++
Sbjct: 173 VAEPLVSHAKPGTLAFLIGPEGGLSD 198
>J9DWF5_9PROT (tr|J9DWF5) Ribosomal RNA small subunit methyltransferase E
OS=alpha proteobacterium IMCC14465 GN=IMCC14465_11630
PE=3 SV=1
Length = 272
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 100/219 (45%), Gaps = 22/219 (10%)
Query: 38 GGLPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDR 97
G + + SE L + G + D+ ++ V+R DD V +FNG+ G I +D+
Sbjct: 10 GKIRLYVSEDL--AAGQNFALNKDQHHYLRNVMRCQIDDPVLIFNGRDGEWLATISQLDK 67
Query: 98 TGIDFVALTDMEIIPPPNTQLHVFSG----------FGTLKGGRADWLVEKCTELGASSV 147
V + + P H+ F +K R D++V+K TE+GASS+
Sbjct: 68 KMALLVVQSQTRVQTPTKNSAHIPLSDIQASDIQVLFAPVKKARLDYMVQKATEMGASSL 127
Query: 148 TPLLTERSSSISENRVDRLERVILAASKQCQRLHEMIFKPPVDIDDLSHLIAQ---SKLP 204
P++T + N DRL+ ++ A++QC LH +D++ ++Q S+
Sbjct: 128 MPVMTHYTQKARLN-YDRLKANMVEAAEQCNLLHVPALHEAMDLEQALESLSQNTASRHV 186
Query: 205 LIATAKATPVL-----NALTSLEKQASGLIIIGPEGDFT 238
+ A P L +L L+ QA I+IGPEG F+
Sbjct: 187 VFCDEGAGPSLTPDMRKSLEDLKNQAVA-ILIGPEGGFS 224
>E1T9F0_BURSG (tr|E1T9F0) Ribosomal RNA small subunit methyltransferase E
OS=Burkholderia sp. (strain CCGE1003) GN=BC1003_2971
PE=3 SV=1
Length = 246
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 103/214 (48%), Gaps = 25/214 (11%)
Query: 40 LPRFFSET-LPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRT 98
+PRFF T L P V+++ D H+ VLRL D + LFNG+GG + ++R
Sbjct: 1 MPRFFVGTSLSPD--GVLQLPDDVVRHVL-VLRLQVGDSIVLFNGEGGEYSAELVTIERR 57
Query: 99 GIDFVA--LTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERS- 155
I D+E+ PP L G G + DWL+EK ELGASS PL T RS
Sbjct: 58 AITVKVREFRDIEVEPPYRLSL----AQGIASGDKMDWLIEKAVELGASSFVPLTTTRSV 113
Query: 156 ----SSISENRVDRLERVILAASKQC--QRLHEMIFKPPVD-----IDDLSHLIAQSKLP 204
+ R E ++ A+ +QC RL E++ PV + + L A +L
Sbjct: 114 VRLAGERALRRHTHWEGIVRASCEQCGRNRLPEVM---PVREIATWLGAMPRLPAADELR 170
Query: 205 LIATAKATPVLNALTSLEKQASGLIIIGPEGDFT 238
++ + +A+ +AL + + +++GPEG F+
Sbjct: 171 ILLSPRASIQFSALPTTAPKGPVTVLVGPEGGFS 204
>B3PFF3_CELJU (tr|B3PFF3) Ribosomal RNA small subunit methyltransferase E
OS=Cellvibrio japonicus (strain Ueda107) GN=CJA_0070
PE=3 SV=1
Length = 241
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 103/208 (49%), Gaps = 18/208 (8%)
Query: 40 LPRFFS-ETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRT 98
+PR ++ +TL GN V+++ H++KVLR+ + LFNG GG I + +
Sbjct: 3 IPRIYTNQTL--LTGNKVQLEESASHHLSKVLRMQPGRELVLFNGAGGEFAATIDEISKR 60
Query: 99 GIDFVALTDMEIIPPPNTQ--LHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTER-- 154
+ + P N + L + G +G R +W+++K TELG + +TPL+TER
Sbjct: 61 HVT----ASIAAHNPHNRESPLQLELAIGISRGERFEWVLQKATELGVTKITPLMTERTE 116
Query: 155 ---SSSISENRVDRLERVILAASKQCQRLHEMIFKPPVDIDDLSHLIAQSKLPLIATAKA 211
S E ++R + ++++A +QCQR PV I D + ++L + +
Sbjct: 117 VKVSGERQEKIMERWQHILISACEQCQRNLLPQLSAPVPITDWLKTV-DAELRFVLHHRD 175
Query: 212 TPVLNALTSLEKQASGLIIIGPEGDFTE 239
+ L A +K S ++IGPEG ++
Sbjct: 176 SQTLPA---DKKPHSAALLIGPEGGLSD 200
>C5VRP9_CLOBO (tr|C5VRP9) Ribosomal RNA small subunit methyltransferase E
OS=Clostridium botulinum D str. 1873 GN=CLG_B0641 PE=3
SV=1
Length = 251
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 73/128 (57%), Gaps = 8/128 (6%)
Query: 58 VQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPPPNTQ 117
++G++ H+ KVLRL ++V + N G G I +D+T ++ L ++E+ P +
Sbjct: 18 IEGEDVKHIYKVLRLKEGEKVNINNCNGKEFLGIIDYIDKTKVEVKLLKELEVNNEPPIE 77
Query: 118 LHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTER-SSSISE-----NRVDRLERVIL 171
+++F G K + D + +KCTELG +TP++T R SSSI++ ++DR R+
Sbjct: 78 VYLFQGLP--KSTKMDLITQKCTELGVKDITPIVTSRVSSSINDIKRESKKLDRWNRIAF 135
Query: 172 AASKQCQR 179
A KQ +R
Sbjct: 136 EACKQNKR 143
>J3G6U6_9PSED (tr|J3G6U6) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas sp. GM48 GN=PMI28_03282 PE=3 SV=1
Length = 239
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 88/181 (48%), Gaps = 14/181 (7%)
Query: 65 HMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPPPNTQLHVFSGF 124
++++VLR++ D +QLF+G G + + + + V D + L + G
Sbjct: 26 YISRVLRMAEGDALQLFDGSGQEFRARLVEVGKKRV--VVQIDESFAGQIESPLQIHLGQ 83
Query: 125 GTLKGGRADWLVEKCTELGASSVTPLLTERSS-SISENRVDR----LERVILAASKQCQR 179
G +G R DW ++K TELG S +TP+ TER + + R D+ +V ++A +QC R
Sbjct: 84 GLSRGERMDWAIQKATELGVSEITPIFTERCEVRLKDERADKRLLHWRQVAISACEQCGR 143
Query: 180 LHEMIFKPPVDIDD-LSHLIAQSKLPLIATAKATPVLNALTSLEKQASGLIIIGPEGDFT 238
+ PP+ + D L A KL L PV L S K +S +IGPEG +
Sbjct: 144 SRVPVIHPPLLLADWLKQTQAGLKLVL------HPVAEPLVSHAKPSSLAFLIGPEGGLS 197
Query: 239 E 239
+
Sbjct: 198 D 198
>R5Q7Y7_9PROT (tr|R5Q7Y7) Ribosomal RNA small subunit methyltransferase E
OS=Acetobacter sp. CAG:977 GN=BN820_01165 PE=4 SV=1
Length = 235
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 94/192 (48%), Gaps = 4/192 (2%)
Query: 47 TLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALT 106
T P S+G V + + ++ VLR V LFNG+ G G I +D+ LT
Sbjct: 8 TQPLSEGAEVFISESQAHYLRSVLREKTGSEVFLFNGRDGEFSGKITVLDKKKAVAGNLT 67
Query: 107 DMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSSSISENRVDRL 166
++ PP L ++ F LK D +VEK TELGA+ + P++TE +++ N DRL
Sbjct: 68 RTKL-QPPRGDLRLY--FAPLKRDCTDMVVEKATELGATLICPVITEYTTASRVN-TDRL 123
Query: 167 ERVILAASKQCQRLHEMIFKPPVDIDDLSHLIAQSKLPLIATAKATPVLNALTSLEKQAS 226
+ + + A +QC+RL PV + +L + + K LI ++ ++ S
Sbjct: 124 KSIAIEACEQCRRLDVPEISDPVSLKELLNEQGEEKPVLIHLDESGAGKPPSKVIDPSRS 183
Query: 227 GLIIIGPEGDFT 238
++GPEG F+
Sbjct: 184 AAFLVGPEGGFS 195
>C6XQV6_HIRBI (tr|C6XQV6) Ribosomal RNA small subunit methyltransferase E
OS=Hirschia baltica (strain ATCC 49814 / DSM 5838 / IFAM
1418) GN=Hbal_1018 PE=3 SV=1
Length = 256
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 109/213 (51%), Gaps = 20/213 (9%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
+PR F + + G + + ++ ++ +VLRLS +D V++FNG+ G + + R+
Sbjct: 4 IPRLFVKA-DLTLGAPIALTSEQANYLFRVLRLSKNDAVRVFNGRDGEWRASVTEVMRSA 62
Query: 100 IDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSSSIS 159
F+ L E+I P + F LK D++VEK TELG + + P++T+R+ + S
Sbjct: 63 -GFLCLE--ELIVPQAVIGDLQLLFAPLKKTCTDFVVEKATELGVTMIQPVITKRTQT-S 118
Query: 160 ENRVDRLERVILAASKQCQRLHEMIFKPPVD-IDDLSHLIAQSKLPLIATA--------- 209
RV RLE+++ A++Q +RL + + P+ ++ L +L A
Sbjct: 119 TVRVSRLEKIVEEAAEQTERLDIPLVQEPIQLLEALGKWDKNRRLVFCDEAGDDPTENWG 178
Query: 210 ----KATPVLNALTSLEKQASGLIIIGPEGDFT 238
+A P++ A++ L K I+IGPEG F+
Sbjct: 179 GDVGRARPMMEAISEL-KDGLAAILIGPEGGFS 210
>J3CER8_9RHIZ (tr|J3CER8) Ribosomal RNA small subunit methyltransferase E
OS=Rhizobium sp. CF080 GN=PMI07_01715 PE=3 SV=1
Length = 245
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 96/203 (47%), Gaps = 14/203 (6%)
Query: 42 RFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGID 101
R F + P G V V ++F ++ VLR+ + LFNG+ G + + R I
Sbjct: 9 RLFIDA-PLGAGTRVEVSPEQFNYLANVLRMEEGAAILLFNGRDGEWKAHVTFPTRKKIV 67
Query: 102 FVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSSSISEN 161
A+ PP++ LH F LK GR D+LV+K E+GA + P++T+
Sbjct: 68 LEAVEQTRP-QPPSSDLHYL--FAPLKVGRLDYLVQKAVEMGAGFIQPVMTQHVQG-KIT 123
Query: 162 RVDRLERVILAASKQCQRLHEMIFKPPVDIDDLSHLIAQSKLPLI-----ATAKATPVLN 216
+DRL+ ++ A++QC L PP + DL + + + A PVL+
Sbjct: 124 SMDRLQANVVEAAEQCGILSVPEVAPPKKLGDLLDTWPEDRRIIFCDEGDAGQNPLPVLS 183
Query: 217 ALTSLEKQASGLIIIGPEGDFTE 239
A+ K+ +++GPEG F+E
Sbjct: 184 AI----KETKLALLVGPEGGFSE 202
>K0DQD4_9BURK (tr|K0DQD4) Ribosomal RNA small subunit methyltransferase E
OS=Burkholderia phenoliruptrix BR3459a GN=rsmE PE=3 SV=1
Length = 251
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 105/213 (49%), Gaps = 23/213 (10%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
+PRFF T P S ++V++ D H+ VLRL D + LFNG+GG + ++R
Sbjct: 6 MPRFFVGT-PLSPDDIVQLPDDVVRHVL-VLRLQTGDSIVLFNGEGGEYSAELVAIERRA 63
Query: 100 I--DFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERS-S 156
+ D+E+ PP L G G + DWL+EK ELGA+S PL T RS
Sbjct: 64 VTVKIREFRDIEVEPPYRLTL----AQGIASGDKMDWLIEKAVELGAASFVPLTTTRSVV 119
Query: 157 SISENRVDR----LERVILAASKQC--QRLHEMIFKPPVD-----IDDLSHLIAQSKLPL 205
+S R R E ++ A+ +QC RL E++ PV + + + +L +
Sbjct: 120 RLSGERALRRHAHWEGIVRASCEQCGRNRLPEVM---PVREIATWLGAMPRVPVGDELRI 176
Query: 206 IATAKATPVLNALTSLEKQASGLIIIGPEGDFT 238
+ + +A+ +AL + + +++GPEG F+
Sbjct: 177 LLSPRASIHFSALPASPPKGPVTVLVGPEGGFS 209
>K1AWS8_PSEFL (tr|K1AWS8) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas fluorescens BBc6R8 GN=MHB_24389 PE=3 SV=1
Length = 239
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 99/206 (48%), Gaps = 16/206 (7%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
L RFF + P S G+ + + +++VLR+S D VQLF+G G + + +
Sbjct: 3 LSRFFVDA-PLSLGDHELPEAQAHY-ISRVLRMSEGDPVQLFDGSGQEFRASLLEVGKKR 60
Query: 100 IDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTER----- 154
+ V +T+ ++L + G G +G R DW ++K TELG + +TP+ ++R
Sbjct: 61 V-VVQVTET-FAGQVESRLQIHLGQGLSRGERMDWAIQKATELGVNEITPIFSDRCEVRL 118
Query: 155 SSSISENRVDRLERVILAASKQCQRLHEMIFKPPVDIDD-LSHLIAQSKLPLIATAKATP 213
++ R+ +V ++A +QC R + PP+ + D L A KL L P
Sbjct: 119 KDERADKRLQHWRQVAISACEQCGRSRVPVIHPPLLLADWLKQAEADLKLVL------HP 172
Query: 214 VLNALTSLEKQASGLIIIGPEGDFTE 239
V L S K S +IGPEG T+
Sbjct: 173 VAEPLVSHAKPGSLAFLIGPEGGLTD 198
>J0PGN5_9PSED (tr|J0PGN5) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas sp. Ag1 GN=A462_12345 PE=3 SV=1
Length = 239
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 99/206 (48%), Gaps = 16/206 (7%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
L RFF + P S G+ + + +++VLR+S D VQLF+G G + + +
Sbjct: 3 LSRFFVDA-PLSLGDHELPEAQAHY-ISRVLRMSEGDPVQLFDGSGQEFRASLLEVGKKR 60
Query: 100 IDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTER----- 154
+ V +T+ ++L + G G +G R DW ++K TELG + +TP+ ++R
Sbjct: 61 V-VVQVTET-FAGQVESRLQIHLGQGLSRGERMDWAIQKATELGVNEITPIFSDRCEVRL 118
Query: 155 SSSISENRVDRLERVILAASKQCQRLHEMIFKPPVDIDD-LSHLIAQSKLPLIATAKATP 213
++ R+ +V ++A +QC R + PP+ + D L A KL L P
Sbjct: 119 KDERADKRLQHWRQVAISACEQCGRSRVPVIHPPLLLADWLKQAEADLKLVL------HP 172
Query: 214 VLNALTSLEKQASGLIIIGPEGDFTE 239
V L S K S +IGPEG T+
Sbjct: 173 VAEPLVSHAKPGSLAFLIGPEGGLTD 198
>J3B4E2_9PSED (tr|J3B4E2) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas sp. GM67 GN=PMI33_05914 PE=3 SV=1
Length = 239
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 98/206 (47%), Gaps = 16/206 (7%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
L RFF + P S G + + +++VLR++ D +QLF+G G + + +
Sbjct: 3 LSRFFIDA-PLSTGEHELPEAQAHY-ISRVLRMAEGDALQLFDGSGHEFRAKLVEVGKKR 60
Query: 100 IDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSS-SI 158
+ V D + L + G G +G R DW ++K TELG + +TP+ ++R +
Sbjct: 61 V--VVQIDESFAGQIESPLQIHLGQGLSRGERMDWAIQKATELGVTEITPIFSDRCEVRL 118
Query: 159 SENRVDR----LERVILAASKQCQRLHEMIFKPPVDIDD-LSHLIAQSKLPLIATAKATP 213
+ R D+ +V ++A +QC R + PPV + D L A+ KL L P
Sbjct: 119 KDERADKRLMHWRQVAISACEQCGRSRVPVIHPPVLLADWLKQTEAELKLVL------HP 172
Query: 214 VLNALTSLEKQASGLIIIGPEGDFTE 239
V L S K A+ +IGPEG ++
Sbjct: 173 VAEPLVSHAKPATLAFLIGPEGGLSD 198
>Q26BV4_FLABB (tr|Q26BV4) Ribosomal RNA small subunit methyltransferase E
OS=Flavobacteria bacterium (strain BBFL7) GN=BBFL7_00606
PE=3 SV=1
Length = 234
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 89/181 (49%), Gaps = 10/181 (5%)
Query: 61 DEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPPPNTQLHV 120
+E H+ KVLR + D + + +G+G L G I ++ D + + E P + LH+
Sbjct: 21 EESKHVFKVLRKNIGDIINITDGRGNLYHGTINHITSNRCD-LDIAFAEAYPTHDYYLHI 79
Query: 121 FSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSSSISENRVDRLERVILAASKQCQRL 180
T R +W +EK TE+G S +TP+L++ S N +DR R+I++A KQ +
Sbjct: 80 AIA-PTKMNDRMEWFLEKATEMGISRITPILSQHSERQKIN-LDRFNRIIVSAMKQSLQF 137
Query: 181 HEMIFKPPVD-IDDLSHLIAQSKL--PLIATAKATPVLNALTSLEKQASGLIIIGPEGDF 237
H KP +D + + I + IA + + + K S ++IGPEGDF
Sbjct: 138 H----KPELDALTNFEDFINAKNVSDKFIAHCEDGDKNHLKNLIHKGNSTTVLIGPEGDF 193
Query: 238 T 238
T
Sbjct: 194 T 194
>J6DLD2_9RHIZ (tr|J6DLD2) Ribosomal RNA small subunit methyltransferase E
OS=Rhizobium sp. CCGE 510 GN=RCCGE510_20634 PE=3 SV=1
Length = 245
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 92/196 (46%), Gaps = 13/196 (6%)
Query: 49 PPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDM 108
P S G + D+F ++ VLR+ V LFNG+ G + + R I A+ +
Sbjct: 15 PLSSGGALEANADQFNYLANVLRMEEGQEVLLFNGRDGEWKATLTFPTRKRIQLTAIEET 74
Query: 109 EIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSSSISENRVDRLER 168
P P LH F LK GR D+LV+K E+GA + P++T+ N +D+L
Sbjct: 75 RPQPAP-CDLHYL--FAPLKVGRLDYLVQKAVEMGAGLLQPVMTQHVQGKITN-LDKLRA 130
Query: 169 VILAASKQCQRLHEMIFKPPVDIDDLSHLIAQSKLPLI-----ATAKATPVLNALTSLEK 223
++ A++QC L PV + DL + + + A PVL+A+ K
Sbjct: 131 NVVEAAEQCGVLGIPDVAEPVRLLDLLDRWPRERRIIYCDEGDAGQNPLPVLSAI----K 186
Query: 224 QASGLIIIGPEGDFTE 239
+ +++GPEG F+E
Sbjct: 187 ERHLALLVGPEGGFSE 202
>J3GWV9_9PSED (tr|J3GWV9) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas sp. GM60 GN=PMI32_04906 PE=3 SV=1
Length = 239
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 98/206 (47%), Gaps = 16/206 (7%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
L RFF + P S G + + +++VLR++ D +QLF+G G + + +
Sbjct: 3 LSRFFIDA-PLSTGQHELPEAQAHY-ISRVLRMAEGDALQLFDGSGHEFRAKLVEVGKKR 60
Query: 100 IDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSS-SI 158
+ V D + L + G G +G R DW ++K TELG + +TP+ ++R +
Sbjct: 61 V--VVQIDESFAGQIESPLQIHLGQGLSRGERMDWAIQKATELGVTEITPIFSDRCEVRL 118
Query: 159 SENRVDR----LERVILAASKQCQRLHEMIFKPPVDIDD-LSHLIAQSKLPLIATAKATP 213
+ R D+ +V ++A +QC R + PPV + D L A+ KL L P
Sbjct: 119 KDERADKRLMHWRQVAISACEQCGRSRVPVIHPPVLLADWLKQTEAELKLVL------HP 172
Query: 214 VLNALTSLEKQASGLIIIGPEGDFTE 239
V L S K A+ +IGPEG ++
Sbjct: 173 VAEPLVSHAKPATLAFLIGPEGGLSD 198
>F0S8Z5_PEDSD (tr|F0S8Z5) Ribosomal RNA small subunit methyltransferase E
OS=Pedobacter saltans (strain ATCC 51119 / DSM 12145 /
JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643)
GN=Pedsa_2943 PE=3 SV=1
Length = 236
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 85/191 (44%), Gaps = 12/191 (6%)
Query: 54 NVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPP 113
NV + +E H +KVLRL DR+ L +G GG G I D T + I+
Sbjct: 14 NVYVLNEEESRHCSKVLRLKIGDRIHLVDGIGGFYLGEIIE------DHPKRTKLTIVSK 67
Query: 114 PN----TQLHVFSGFGTLKG-GRADWLVEKCTELGASSVTPLLTERSSSISENRVDRLER 168
H+ K R +W +EK TE+G VTP++ E S + + +RLE+
Sbjct: 68 EKDFNKVAFHLHIAIAPTKNIDRIEWFLEKATEIGIQEVTPVICEHSER-KDVKTERLEK 126
Query: 169 VILAASKQCQRLHEMIFKPPVDIDDLSHLIAQSKLPLIATAKATPVLNALTSLEKQASGL 228
++++A KQ + + P L + IA T S +++ L
Sbjct: 127 IMVSAMKQSLKAYLPKLNKPQTFKSLISSVGSDVHKYIAHCIPTEKREIADSFKREEKYL 186
Query: 229 IIIGPEGDFTE 239
I+IGPEGDF+E
Sbjct: 187 ILIGPEGDFSE 197
>J0PBM6_9SPHI (tr|J0PBM6) Ribosomal RNA small subunit methyltransferase E
OS=Saprospira grandis DSM 2844 GN=SapgrDRAFT_3407 PE=3
SV=1
Length = 238
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 96/196 (48%), Gaps = 11/196 (5%)
Query: 49 PPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDM 108
P +G ++ DEF H K LR D++ LF+G+G I + L
Sbjct: 7 PNIQGQQAILEEDEFRHACKTLRKKEGDQLHLFDGRGHYYLAQIAKTSKREALLDILEQE 66
Query: 109 EIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSSSISENRVDRLER 168
E P + LH+ T R +WLVEK E+G + ++ L+++S + R+DRL+R
Sbjct: 67 ERPLPWSFSLHLALA-PTKNMDRMEWLVEKAVEVGVNKISLFLSQQSER-KKVRLDRLQR 124
Query: 169 VILAASKQCQRLHEMIFKPPVDIDDLSHLIAQSKLP--LIATAKAT--PVLNAL--TSLE 222
+ L+A+KQ H+ + +++ S + Q K IA +T P+L A ++
Sbjct: 125 IALSAAKQS---HKWVLPEWGELEKFSDFLPQQKAQHRFIAHCHSTDLPLLKAACPKTIG 181
Query: 223 KQASGLIIIGPEGDFT 238
+ LI++GPEGDF+
Sbjct: 182 PKEEILILLGPEGDFS 197
>D3BUV8_POLPA (tr|D3BUV8) Uncharacterized protein OS=Polysphondylium pallidum
GN=PPL_11930 PE=4 SV=1
Length = 275
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 101/218 (46%), Gaps = 21/218 (9%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
L RFF E +P VR+ G + H+ K LRL V+LF+G ++ I ++ +
Sbjct: 4 LRRFFVENIPLMLRGSVRLDGSQHLHLKKSLRLKEGQEVELFDGNQSVI-AVIDSIGKNH 62
Query: 100 IDFVALTDMEIIPPPNTQLHVFSGFGTL-----KGGRADWLVEKCTELGASSVTPLLTE- 153
D + E + Q H F + K R DW+VEK TEL S+ + T+
Sbjct: 63 SDLIISKINESTSSADNQ-HTFDSRIDIASSLPKASRGDWMVEKLTELDVRSLYLIETDY 121
Query: 154 ----RSSSISENRVDRLERVILAASKQCQRLHE-----MIFKPPVDIDDLSHLIAQSKLP 204
+SS+I++N+ DR +R+I+ A+KQ + + + +I P L LI + K
Sbjct: 122 SKSSKSSNITDNKFDRYQRIIIEAAKQSKIVKDNLWTHIIVGHPTG-QPLPQLIEKFKTD 180
Query: 205 LIATAKATPVLNALTSLEKQASG---LIIIGPEGDFTE 239
I N++ SL L+++G EG FTE
Sbjct: 181 YIKNNNDNNNNNSVESLSIPKVSPRLLVMVGSEGGFTE 218
>E0XQ15_9BACT (tr|E0XQ15) Ribosomal RNA small subunit methyltransferase E
OS=uncultured bacterium HF4000_05M23 PE=3 SV=1
Length = 274
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 97/192 (50%), Gaps = 19/192 (9%)
Query: 47 TLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALT 106
T P S + + G + VLR+ DR+ LF+G G E I +DRT + ++
Sbjct: 17 TGPDSAKRSITLDGQLARQLKTVLRVGIGDRIGLFDGSGLEWEVQIDQVDRTEVAVRLIS 76
Query: 107 DMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTER-----SSSISEN 161
+E +P P ++ + G + R + ++KCTELGA P+L+ER + + S +
Sbjct: 77 TVESVPEPFARVTML--LGLARPERIELAIQKCTELGAVRFIPVLSERVQGGVTGAPSGS 134
Query: 162 RVDRLERVILAASKQCQRLHEMIFKPPVD-----IDDLSHLIAQSKLPLI---ATAKATP 213
R+DR R+ + A++QC R PPVD +D ++ +A +L + T ++P
Sbjct: 135 RLDRWRRIAIEAAEQCGR----AVVPPVDEPLPVMDAVNSQLAARQLFCMWEERTGDSSP 190
Query: 214 VLNALTSLEKQA 225
+ AL S+E QA
Sbjct: 191 LGEALKSIETQA 202
>J3GRR7_9PSED (tr|J3GRR7) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas sp. GM49 GN=PMI29_00845 PE=3 SV=1
Length = 239
Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 97/206 (47%), Gaps = 16/206 (7%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
L RFF + P S G + + +++VLR++ D +QLF+G G + + +
Sbjct: 3 LSRFFIDA-PLSTGEHELPEAQAHY-ISRVLRMAEGDALQLFDGSGQEFRARLVEVGKKR 60
Query: 100 IDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSS-SI 158
+ V D + L + G G +G R DW ++K TELG + +TP+ TER +
Sbjct: 61 V--VVQIDESFAGQVESPLQIHLGQGLSRGERMDWAIQKATELGVTEITPIFTERCEVRL 118
Query: 159 SENRVDR----LERVILAASKQCQRLHEMIFKPPVDIDD-LSHLIAQSKLPLIATAKATP 213
+ R D+ +V ++A +QC R + PP+ + D L A KL L P
Sbjct: 119 KDERADKRLLHWRQVAISACEQCGRSQVPVIHPPLLLADWLKQTQAGLKLVL------HP 172
Query: 214 VLNALTSLEKQASGLIIIGPEGDFTE 239
V L S K +S +IGPEG ++
Sbjct: 173 VAEPLVSHAKPSSLAFLIGPEGGLSD 198
>A5FB28_FLAJ1 (tr|A5FB28) Ribosomal RNA small subunit methyltransferase E
OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM
2064 / UW101) GN=Fjoh_4594 PE=3 SV=1
Length = 235
Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 90/181 (49%), Gaps = 8/181 (4%)
Query: 61 DEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPPPNTQLHV 120
+E H+ KVLR + D + + NG+G L E I + V++ ++ P P +LH+
Sbjct: 21 EESKHIIKVLRKKDSDILHVTNGQGLLFETEI-TLASDNKCIVSVLSIKKSPEPKFRLHL 79
Query: 121 FSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSSSISENRVDRLERVILAASKQCQRL 180
T R +W +EK TE+G +TP++ +RS N ++R E+++L+A KQ
Sbjct: 80 AVA-PTKMNDRFEWFLEKATEIGIQEITPIICDRSERKVIN-LERFEKIVLSAMKQS--- 134
Query: 181 HEMIFKPPVDIDDLSHLIAQSK--LPLIATAKATPVLNALTSLEKQASGLIIIGPEGDFT 238
+EM D I Q L IA + T + SL+ + ++IGPEGDF+
Sbjct: 135 NEMFLPKLNDAVSFKEFIKQKNQGLQFIAHCEETDKKSLKESLKSNENVTLLIGPEGDFS 194
Query: 239 E 239
E
Sbjct: 195 E 195
>J0C531_RHILT (tr|J0C531) Ribosomal RNA small subunit methyltransferase E
OS=Rhizobium leguminosarum bv. trifolii WSM2012
GN=Rleg10DRAFT_2562 PE=3 SV=1
Length = 245
Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 98/205 (47%), Gaps = 14/205 (6%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
+ R F + P S+G + V D+F ++ VLR+ V LFNG+ G + + R
Sbjct: 7 MQRLFVDA-PLSRGVALEVNVDQFNYLANVLRMQEGGEVLLFNGRDGEWKATLTFPTRKR 65
Query: 100 IDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSSSIS 159
I A+ + P P LH F LK GR D+LV+K E+GA + P++T+
Sbjct: 66 IQLTAIEETRPQPAP-CDLHYL--FAPLKVGRLDYLVQKAVEMGAGLLQPVMTQHVQGKI 122
Query: 160 ENRVDRLERVILAASKQCQRLHEMIFKPPVDIDDLSHLIAQSKLPLI-----ATAKATPV 214
N +D+L ++ A++QC L PV + DL + + + A PV
Sbjct: 123 TN-LDKLRANVVEAAEQCGVLGIPEVAEPVRLLDLLDRWPKERRIIYCDEGDAGQNPLPV 181
Query: 215 LNALTSLEKQASGLIIIGPEGDFTE 239
L+A+ ++ +++GPEG F+E
Sbjct: 182 LSAI----RERHLALLVGPEGGFSE 202
>L0G1V1_ECHVK (tr|L0G1V1) Ribosomal RNA small subunit methyltransferase E
OS=Echinicola vietnamensis (strain DSM 17526 / LMG 23754
/ KMM 6221) GN=Echvi_3055 PE=3 SV=1
Length = 235
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 99/197 (50%), Gaps = 6/197 (3%)
Query: 43 FFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDF 102
F+ + +P S GN+ + +E H+ KVLR + D V + +GKG L I D +
Sbjct: 4 FYQKDIPES-GNIT-LHPEESKHLVKVLRKNVGDEVFMTDGKGHLFSCQITKGDLKRAE- 60
Query: 103 VALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSSSISENR 162
+++ + + P P+ +H+ T R +W++EK TE+G S +T + T S S +
Sbjct: 61 LSIIEKKATPLPDHHIHLAIA-PTKNTDRMEWMLEKITEIGFSKLTFIKTSNSER-SFLK 118
Query: 163 VDRLERVILAASKQCQRLHEMIFKPPVDIDDLSHLIAQSKL-PLIATAKATPVLNALTSL 221
DRLE+ +++A KQ + H I P ++L AQ L IA +
Sbjct: 119 PDRLEKKMVSACKQSLKTHFPIIDPLTSFEELLDKHAQDDLQKFIAYVDENHRHHLFEVA 178
Query: 222 EKQASGLIIIGPEGDFT 238
+ + + LI+IGPEGDF+
Sbjct: 179 KAKGAYLILIGPEGDFS 195
>M4WUA7_PSEDE (tr|M4WUA7) 16S ribosomal RNA methyltransferase RsmE OS=Pseudomonas
denitrificans ATCC 13867 GN=H681_01900 PE=4 SV=1
Length = 239
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 91/183 (49%), Gaps = 18/183 (9%)
Query: 65 HMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGI--DFVALTDMEIIPPPNTQLHVFS 122
++ +VLR S D VQLF+G G G + + + + + D + P L V
Sbjct: 26 YIGRVLRHSAGDAVQLFDGSGHEYLGELIEVGKKNVRVELREAFDGQAESP----LRVHL 81
Query: 123 GFGTLKGGRADWLVEKCTELGASSVTPLLTERSS-SISENRVDR----LERVILAASKQC 177
G G +G R DW ++K TELGAS +TP+++ER + + R D+ +V ++A +QC
Sbjct: 82 GQGLSRGERMDWAIQKATELGASEITPIVSERCEVRLKDERADKRMAHWRQVAISACEQC 141
Query: 178 QRLHEMIFKPPVDIDD-LSHLIAQSKLPLIATAKATPVLNALTSLEKQASGLIIIGPEGD 236
R + PV + + L AQ KL L PV LTS +K S +IGPEG
Sbjct: 142 GRSVLPVLNAPVTLAEWLESCEAQLKLVL------HPVAEPLTSHDKPTSLAFLIGPEGG 195
Query: 237 FTE 239
++
Sbjct: 196 LSD 198
>Q1ML02_RHIL3 (tr|Q1ML02) Ribosomal RNA small subunit methyltransferase E
OS=Rhizobium leguminosarum bv. viciae (strain 3841)
GN=RL0856 PE=3 SV=1
Length = 245
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 98/205 (47%), Gaps = 14/205 (6%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
+ R F + P S G VV D+F ++ VLR+ + LFNG+ G + + R
Sbjct: 7 MQRLFVDA-PLSSGAVVEANADQFNYLGNVLRMEEGAEILLFNGRDGEWKATLTFPTRKR 65
Query: 100 IDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSSSIS 159
I A + P P LH F LK GR D+LV+K E+GA + P++T+
Sbjct: 66 ILLTATEETRPQPQP-CDLHYL--FAPLKVGRMDYLVQKAVEMGAGLLQPVMTQHVQGKI 122
Query: 160 ENRVDRLERVILAASKQCQRLHEMIFKPPVD-IDDLSHLIAQSKLPLIATAKA----TPV 214
N +D+L ++ A++QC L PV +D L H ++ ++ A PV
Sbjct: 123 TN-LDKLRANVVEAAEQCGILGIPDVAEPVRLLDLLDHWPSERRIIYCDEGDAGQNPLPV 181
Query: 215 LNALTSLEKQASGLIIIGPEGDFTE 239
L+A+ ++ +++GPEG F+E
Sbjct: 182 LSAI----RERHLALLVGPEGGFSE 202
>J2USJ5_9PSED (tr|J2USJ5) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas sp. GM74 GN=PMI34_02853 PE=3 SV=1
Length = 239
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 89/181 (49%), Gaps = 14/181 (7%)
Query: 65 HMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPPPNTQLHVFSGF 124
++++VLR++ D +QLF+G G + + + + V D + L + G
Sbjct: 26 YISRVLRMAEGDVLQLFDGSGQEFRARLVEVGKKRV--VVQVDESFAGQVESPLQIHLGQ 83
Query: 125 GTLKGGRADWLVEKCTELGASSVTPLLTERSS-SISENRVDR----LERVILAASKQCQR 179
G +G R DW ++K TELG + +TP+ T+R + + R D+ +V ++A +QC R
Sbjct: 84 GLSRGERMDWAIQKATELGVTEITPIFTDRCEVRLKDERADKRLLHWRQVAISACEQCGR 143
Query: 180 LHEMIFKPPVDIDD-LSHLIAQSKLPLIATAKATPVLNALTSLEKQASGLIIIGPEGDFT 238
+ PP+ + D L A+ KL L PV L S K +S +IGPEG +
Sbjct: 144 SRVPVIHPPLLLADWLKQTQAELKLVL------HPVAEPLVSHAKPSSLAFLIGPEGGLS 197
Query: 239 E 239
+
Sbjct: 198 D 198
>I9NBF3_RHILT (tr|I9NBF3) Ribosomal RNA small subunit methyltransferase E
OS=Rhizobium leguminosarum bv. trifolii WSM597
GN=Rleg9DRAFT_2913 PE=3 SV=1
Length = 245
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 96/205 (46%), Gaps = 14/205 (6%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
+ R F + P S G + D+F ++ VLR+ V LFNG+ G + + R
Sbjct: 7 MQRLFVDA-PLSNGATLEANADQFNYLANVLRMEEGGEVLLFNGRDGEWKATLSFPTRKR 65
Query: 100 IDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSSSIS 159
I A+ + P P LH F LK GR D+LV+K E+GA + P++T+
Sbjct: 66 IQLTAIEETRPQPAP-CDLHYL--FAPLKVGRMDYLVQKAVEMGAGLLQPVMTQHVQGKI 122
Query: 160 ENRVDRLERVILAASKQCQRLHEMIFKPPVDIDDLSHLIAQSKLPLI-----ATAKATPV 214
N +D+L ++ A++QC L PV + DL + + + A PV
Sbjct: 123 TN-LDKLRANVVEAAEQCGVLGIPDVAEPVRLLDLLDRWPKERRIIYCDEGDAGQNPLPV 181
Query: 215 LNALTSLEKQASGLIIIGPEGDFTE 239
L+A+ ++ +++GPEG F+E
Sbjct: 182 LSAI----RERHLALLVGPEGGFSE 202
>Q2YC34_NITMU (tr|Q2YC34) Ribosomal RNA small subunit methyltransferase E
OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB
11849) GN=Nmul_A0379 PE=3 SV=1
Length = 255
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 95/215 (44%), Gaps = 18/215 (8%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
LPRF+ + G + + H +VLRL D V LFNG GG I + G
Sbjct: 3 LPRFYC-PIEILAGQTLELPSAVAHHAARVLRLEAGDEVVLFNGDGGEFTCVILRASKQG 61
Query: 100 IDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERS---- 155
+D V +++ + L + G + DW+V+K ELG + + PL+T++S
Sbjct: 62 VDVVVERHVQV--ERESPLTILLAQAVCMGEKMDWIVQKAVELGVTRIQPLITKQSVVRL 119
Query: 156 -SSISENRVDRLERVILAASKQCQRLHEMIFKPPVDI-------DDLSHLIAQSKLP--- 204
E RV L++V+++A +QC R H P + + + + S P
Sbjct: 120 GGERGEKRVSHLQKVVISACEQCGRNHVPEVLPLATLRNWLGRQTEARRMSSDSLSPDAC 179
Query: 205 LIATAKATPVLNALTSLEKQASGLIIIGPEGDFTE 239
+ + AT L S ++++GPEG FT+
Sbjct: 180 FMLSPFATKGLRDFKHSSNIGSIILLVGPEGGFTQ 214
>A9DUL4_9FLAO (tr|A9DUL4) Ribosomal RNA small subunit methyltransferase E
OS=Kordia algicida OT-1 GN=KAOT1_02812 PE=3 SV=1
Length = 235
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 85/178 (47%), Gaps = 4/178 (2%)
Query: 61 DEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPPPNTQLHV 120
+E H+ +VLR DD + + NGKG + I D+ V + E P + +LH+
Sbjct: 21 EESRHIVRVLRKKEDDILHITNGKGYIFSAIITVADQKNC-MVKIQSFEFQPQKSYKLHL 79
Query: 121 FSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSSSISENRVDRLERVILAASKQCQRL 180
T R +W +EK TE+G ++TP++ + S + +R E++I +A+KQ
Sbjct: 80 AVA-PTKMNDRYEWFLEKATEIGIDTITPIICDHSER-KVIKAERFEKIIQSATKQSLSA 137
Query: 181 HEMIFKPPVDIDDLSHLIAQSKLPLIATAKATPVLNALTSLEKQASGLIIIGPEGDFT 238
+ KP + + +L IA + + +L+ Q I+IGPEGDF+
Sbjct: 138 YFPKLKPAISFSNFISTHTDEQL-FIAHCEENEKQSLKEALKIQKDVTILIGPEGDFS 194
>F2ABG4_RHIET (tr|F2ABG4) Ribosomal RNA small subunit methyltransferase E
OS=Rhizobium etli CNPAF512 GN=RHECNPAF_3350022 PE=3 SV=1
Length = 245
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 97/205 (47%), Gaps = 14/205 (6%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
+ R F + P S G + ++F ++ VLR+ D + LFNG+ G + + R
Sbjct: 7 MQRLFVDA-PLSSGAAIEANAEQFNYLANVLRMEADAEILLFNGRDGEWKASLTFPTRKR 65
Query: 100 IDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSSSIS 159
I A+ P P LH F LK GR D+LV+K E+GA + P++T+
Sbjct: 66 ILLTAIEQTRPQPLP-CDLHYL--FAPLKVGRMDYLVQKAVEMGAGLLQPVMTQHVQGKI 122
Query: 160 ENRVDRLERVILAASKQCQRLHEMIFKPPVDIDDLSHLIAQSKLPLI-----ATAKATPV 214
N +D+L ++ A++QC L PV + DL + + + A PV
Sbjct: 123 TN-LDKLRANVVEAAEQCGVLGIPDVAEPVKLSDLLDRWPKERRIIYCDEGDAGQNPLPV 181
Query: 215 LNALTSLEKQASGLIIIGPEGDFTE 239
L+A+ EK + +++GPEG F+E
Sbjct: 182 LSAIR--EKHLA--LLVGPEGGFSE 202
>B5ZRA8_RHILW (tr|B5ZRA8) Ribosomal RNA small subunit methyltransferase E
OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304)
GN=Rleg2_0442 PE=3 SV=1
Length = 245
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 96/205 (46%), Gaps = 14/205 (6%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
+ R F + P S G + D+F ++ VLR+ V LFNG+ G + + R
Sbjct: 7 MQRLFVDA-PLSSGAALEANADQFNYLANVLRMEEGGEVLLFNGRDGEWKATLTFPTRKR 65
Query: 100 IDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSSSIS 159
I A+ + P P LH F LK GR D+LV+K E+GA + P++T+
Sbjct: 66 IQLTAIEETRPQPAP-CDLHYL--FAPLKVGRMDYLVQKAVEMGAGLLQPVMTQHVQGKI 122
Query: 160 ENRVDRLERVILAASKQCQRLHEMIFKPPVDIDDLSHLIAQSKLPLI-----ATAKATPV 214
N +D+L ++ A++QC L PV + DL + + + A PV
Sbjct: 123 TN-LDKLRANVVEAAEQCGVLGIPDVAEPVRLLDLLDRWPKERRIIYCDEGDAGQNPLPV 181
Query: 215 LNALTSLEKQASGLIIIGPEGDFTE 239
L+A+ ++ +++GPEG F+E
Sbjct: 182 LSAI----RERHLALLVGPEGGFSE 202
>J2R6K7_9PSED (tr|J2R6K7) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas sp. GM41(2012) GN=PMI27_03569 PE=3 SV=1
Length = 239
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 98/206 (47%), Gaps = 16/206 (7%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
L RFF + P S G + + +++VLR++ D +QLF+G G + + +
Sbjct: 3 LSRFFIDA-PLSTGEHELPEAQAHY-ISRVLRMAEGDALQLFDGSGHEFRATLVEVGKKR 60
Query: 100 IDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSS-SI 158
+ V D + L + G G +G R DW ++K TELG + +TP+ ++R +
Sbjct: 61 V--VVQIDESFTGQVESPLSIHLGQGLSRGERMDWAIQKATELGVTEITPIFSDRCEVRL 118
Query: 159 SENRVDR----LERVILAASKQCQRLHEMIFKPPVDIDD-LSHLIAQSKLPLIATAKATP 213
+ R D+ +V ++A +QC R + PP+ + D L A+ KL L P
Sbjct: 119 KDERADKRLMHWRQVAISACEQCGRSRVPVIHPPLLLADWLKQTEAELKLVL------HP 172
Query: 214 VLNALTSLEKQASGLIIIGPEGDFTE 239
V L S K A+ +IGPEG ++
Sbjct: 173 VAEPLVSHAKPATLAFLIGPEGGLSD 198
>K6UHW8_ACIRA (tr|K6UHW8) Ribosomal RNA small subunit methyltransferase E
OS=Acinetobacter radioresistens DSM 6976 = NBRC 102413 =
CIP 103788 GN=ACRAD_11_00600 PE=3 SV=1
Length = 239
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 100/210 (47%), Gaps = 22/210 (10%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDR-- 97
+PRF+ E + G V + F H KVLR D LFNG+GG E + + +
Sbjct: 1 MPRFYIEA-DLTVGTTVELTETVFHHWVKVLRAQIGDSATLFNGRGGEFEANLTEISKKT 59
Query: 98 TGIDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSS- 156
+ + + PP T L G KG R D++++K TELG +++ L +ER
Sbjct: 60 ASVAIRSSNPADRTPPFTTVL----GQVMSKGDRMDYVIQKATELGVTTIQLLTSERCEM 115
Query: 157 ----SISENRVDRLERVILAASKQC--QRLHEMIFKPPVDIDD-LSHLIAQSKLPLIATA 209
+ ++D + V++AA +QC R+ E++ PPV + D L ++ ++L L
Sbjct: 116 RLKYDRDQKKLDHWQAVVIAACEQCGMNRIPEIL--PPVPLTDWLQQNLSATRLVLAPNK 173
Query: 210 KATPVLNALTSLEKQASGLIIIGPEGDFTE 239
+ VL + Q ++IGPEG +E
Sbjct: 174 RQQNVLT-----DAQTDLALLIGPEGGLSE 198
>N9WGM3_9CLOT (tr|N9WGM3) RsmE family RNA methyltransferase OS=Clostridium
colicanis 209318 GN=HMPREF1092_01441 PE=4 SV=1
Length = 248
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 94/194 (48%), Gaps = 11/194 (5%)
Query: 54 NVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPP 113
N ++ GD+ H+ KVLRLS ++V+L + G I ++ +T ++ + ++I
Sbjct: 14 NKAKIVGDDVKHIYKVLRLSEGEKVKLNDCNGNEYLAKIIDITKTEVELEIIEKLDIDNE 73
Query: 114 PNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSSSISE---NRVDRLERVI 170
++ +F G K + D +V+K TELG + PLLTER + ++DRL R+
Sbjct: 74 SGVEITLFQGLP--KSQKMDLIVQKGTELGIKTFQPLLTERVDVKLKGDFKKLDRLNRIA 131
Query: 171 LAASKQCQRLHEMIFKPPVDIDDLSHLIAQSKLPLIATAKATP-----VLNALTSLEKQA 225
L A KQ +R P+ +D+L + L L+ A ++ + E
Sbjct: 132 LEACKQSKRSIIPKVLEPISMDNLVEEMKNFDLILVPYENAENFGIKRLMQEIDKTEISK 191
Query: 226 SGLIIIGPEGDFTE 239
G I+IGPEG F E
Sbjct: 192 IG-IVIGPEGGFEE 204
>J7SM40_PSEME (tr|J7SM40) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas mendocina DLHK GN=A471_19370 PE=3 SV=1
Length = 241
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 91/181 (50%), Gaps = 14/181 (7%)
Query: 65 HMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPPPNTQLHVFSGF 124
++ +VLR + D VQLF+G G G + + + + ++ + ++H+ G
Sbjct: 26 YIGRVLRHAAGDAVQLFDGSGREFLGELIEVGKKTVRVELREALDGLAESPLRIHL--GQ 83
Query: 125 GTLKGGRADWLVEKCTELGASSVTPLLTERSS-SISENRVDR----LERVILAASKQCQR 179
G +G R DW ++K TELGAS +TP+++ER + + R D+ +V ++A +QC R
Sbjct: 84 GLSRGERMDWAIQKATELGASEITPIVSERCEVRLKDERADKRLAHWRQVAISACEQCGR 143
Query: 180 LHEMIFKPPVDIDD-LSHLIAQSKLPLIATAKATPVLNALTSLEKQASGLIIIGPEGDFT 238
+ PP+++ L A KL L PV AL S +K S +IGPEG
Sbjct: 144 SVLPVIHPPLELSAWLQQTEADLKLVL------HPVAEALQSHDKPNSLAFLIGPEGGLN 197
Query: 239 E 239
E
Sbjct: 198 E 198
>H0RSW0_9BRAD (tr|H0RSW0) Ribosomal RNA small subunit methyltransferase E
OS=Bradyrhizobium sp. ORS 285 GN=BRAO285_1320020 PE=3
SV=1
Length = 249
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 101/200 (50%), Gaps = 9/200 (4%)
Query: 41 PRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGI 100
PR + + P +G V ++ ++ ++ VLRL D V +FNG+ G + I R
Sbjct: 9 PRLYVDA-PLKEGGAVALERNQSNYLGNVLRLGAGDSVLVFNGRDGEWQAAIAGRKRP-- 65
Query: 101 DFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSSSISE 160
D +A+ + I P + + F LK R D++V+K E+GA+ + P+LT R + ++
Sbjct: 66 DLLAI--QQRIRPQDRLPDIAYVFAPLKHARLDYVVQKAVEMGAARLEPILT-RHTQVAR 122
Query: 161 NRVDRLERVILAASKQCQRLHEMIFKPPVDIDDLSHLIAQSKLPLIATAKATPVLNALTS 220
+R+ ++ A++QC L + PV ++ A ++L L+ +A V + +
Sbjct: 123 VNGERMRANVIEAAEQCGILSLAEVRDPVPLERFLRERAATRL-LVFCDEAADVAAPVQA 181
Query: 221 LEKQASGLI--IIGPEGDFT 238
L +A G I +IGPEG F
Sbjct: 182 LRDEAPGGIDVLIGPEGGFA 201
>R7DZR9_9BACT (tr|R7DZR9) Ribosomal RNA small subunit methyltransferase E
OS=Akkermansia sp. CAG:344 GN=BN616_00266 PE=4 SV=1
Length = 245
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 88/191 (46%), Gaps = 11/191 (5%)
Query: 58 VQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPPPNTQ 117
++GDE H KVLRL D +F+G G + R+ V L E PP
Sbjct: 18 LRGDEAHHAAKVLRLKQGDSCVVFDGCGRAAHAVVAEPPRS--SGVLLAPGEECPPAPEL 75
Query: 118 LHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERS-----SSISENRVDRLERVILA 172
H+ KG D +++K ELG S++ PLLT+R+ + +E + + +R+ L
Sbjct: 76 AHLTLCQAVPKGANMDLIIQKSVELGVSAIVPLLTDRTIVRLNAREAEAKRQKWQRIALE 135
Query: 173 ASKQCQRLHEMIFKPPVDIDDLSHLIAQSKLPLIAT--AKATPVLNALTSLEKQA--SGL 228
A KQC + PV + A L +IA+ PV + L ++ S
Sbjct: 136 ACKQCGQNTLPEVTAPVPFAEWLRRGAPEGLNVIASLVPGVRPVRDVLEEARSRSVRSAA 195
Query: 229 IIIGPEGDFTE 239
+++GPEGDFT+
Sbjct: 196 LLVGPEGDFTD 206
>L1M2M7_PSEPU (tr|L1M2M7) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas putida CSV86 GN=CSV86_09662 PE=3 SV=1
Length = 239
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 92/181 (50%), Gaps = 14/181 (7%)
Query: 65 HMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIP-PPNTQLHVFSG 123
++++VLR+S D VQLF+G G + + + G V ++ E +P + LH+ G
Sbjct: 26 YISRVLRMSAGDAVQLFDGSG---QEYLGQLLEVGKKTVRVSLAEALPGQAESPLHIHLG 82
Query: 124 FGTLKGGRADWLVEKCTELGASSVTPLLTERSS-SISENRVDR----LERVILAASKQCQ 178
G +G R DW ++K TELG + +TP++++R + + R D+ +V ++A +QC
Sbjct: 83 QGLSRGERMDWAIQKATELGVNVITPIVSDRCEVRLKDERADKRLAHWRQVAISACEQCG 142
Query: 179 RLHEMIFKPPVDIDDLSHLIAQSKLPLIATAKATPVLNALTSLEKQASGLIIIGPEGDFT 238
R PP+ L+ +A S L PV L S + AS +IGPEG +
Sbjct: 143 RSTVPRINPPL---TLAEWLAASDEALKLVLH--PVAEPLVSHARPASLAFLIGPEGGLS 197
Query: 239 E 239
+
Sbjct: 198 D 198
>D2QXU4_PIRSD (tr|D2QXU4) Ribosomal RNA small subunit methyltransferase E
OS=Pirellula staleyi (strain ATCC 27377 / DSM 6068 /
ICPB 4128) GN=Psta_3357 PE=3 SV=1
Length = 236
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 91/201 (45%), Gaps = 10/201 (4%)
Query: 42 RFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGID 101
R+F + P + + GDE H+ V+R D V LF+G G + I + ++
Sbjct: 4 RYFVDK--PLAAGIAIIAGDEARHLVGVMRAKLGDEVVLFDGCGHEADATIEKTAKERVE 61
Query: 102 FVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERS-SSISE 160
T ++ +QL + KG R WLVEK ELG ++ PL T+R + E
Sbjct: 62 LRVETVRDVPREFASQLTL--AVALPKGDRQKWLVEKLVELGCDALLPLETDRGVAQPVE 119
Query: 161 NRVDRLERVILAASKQCQRLHEMIFKPPVDIDDLSHLIAQSKLPLIATAKATPVLNALTS 220
+ ++RL+R +L ASKQ R M + P D L P A P +L
Sbjct: 120 SAIERLKRGVLEASKQSGRALLMRIEAPASSDTLFSAATVHNQPCFI---AHPGGCSLDQ 176
Query: 221 LEKQASG--LIIIGPEGDFTE 239
Q+SG L IGPEG F++
Sbjct: 177 AWDQSSGNALFAIGPEGGFSD 197
>K0VZE2_9RHIZ (tr|K0VZE2) Ribosomal RNA small subunit methyltransferase E
OS=Rhizobium sp. Pop5 GN=RCCGEPOP_15656 PE=3 SV=1
Length = 245
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 95/205 (46%), Gaps = 14/205 (6%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
+ R F + P S G V D+F ++ VLRL + + LFNG+ G + + R
Sbjct: 7 MQRLFVDA-PLSSGAAVEANADQFNYLANVLRLEDGAEILLFNGRDGEWKATLSFPTRKR 65
Query: 100 IDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSSSIS 159
I A P P LH F LK GR D+LV+K E+GA + P++T+
Sbjct: 66 IQLTATEQTRPQPAP-CDLHYL--FAPLKVGRLDYLVQKAVEMGAGLLQPVMTQHVQGKI 122
Query: 160 ENRVDRLERVILAASKQCQRLHEMIFKPPVDIDDLSHLIAQSKLPLI-----ATAKATPV 214
N +D+L ++ A++QC L P+ + DL + + A PV
Sbjct: 123 TN-LDKLRANVVEAAEQCGVLGIPEVAEPMKLSDLLDRWPSERRIIYCDEGDAGQNPLPV 181
Query: 215 LNALTSLEKQASGLIIIGPEGDFTE 239
L+A+ E+ + +++GPEG F+E
Sbjct: 182 LSAIQ--ERHLA--LLVGPEGGFSE 202
>A6EK90_9SPHI (tr|A6EK90) Ribosomal RNA small subunit methyltransferase E
OS=Pedobacter sp. BAL39 GN=PBAL39_05663 PE=3 SV=1
Length = 234
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 80/182 (43%), Gaps = 8/182 (4%)
Query: 61 DEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPPPNTQLHV 120
+E H KVLRL D V L +G+GG E I + + + N LH+
Sbjct: 19 EESKHCLKVLRLGVGDVVNLIDGRGGFYEAEIIEAGKRNVKLRVTHARQEFQKRNHHLHI 78
Query: 121 FSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSSSISENRV---DRLERVILAASKQC 177
T R +W +EK TE+G +TPLL ER SE ++ DRL +VI +A KQ
Sbjct: 79 AIA-PTKNIDRLEWFLEKATEIGIDEITPLLCER----SERKIVKEDRLFKVITSAVKQS 133
Query: 178 QRLHEMIFKPPVDIDDLSHLIAQSKLPLIATAKATPVLNALTSLEKQASGLIIIGPEGDF 237
+ + + P + D + + P ++ Q I+IGPEGDF
Sbjct: 134 LQAYHPVLNPLTSMSDFLRQENDTFKMIAHCIDGVPREYISEVIQPQGRYTILIGPEGDF 193
Query: 238 TE 239
+E
Sbjct: 194 SE 195
>E6Q5D5_9ZZZZ (tr|E6Q5D5) Uncharacterized protein OS=mine drainage metagenome
GN=CARN4_2358 PE=4 SV=1
Length = 241
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 96/203 (47%), Gaps = 10/203 (4%)
Query: 42 RFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGID 101
RFF E + G + G++ + V+R D +++ + G I +DRT +
Sbjct: 3 RFFVEGIV-RVGEPCEIIGEDARKLKLVMRARVGDELEILDSGGARYRCTIERLDRTAL- 60
Query: 102 FVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTER--SSSIS 159
V + + PPP L G KG + D++VEK +ELG + PL+T+R + S
Sbjct: 61 -VLPRERLVEPPPERTLRFTLAQGIPKGSKMDYVVEKASELGVVRLVPLITDRCIARDCS 119
Query: 160 ENRVDRLERVILAASKQCQRLHEMIFKPPVDIDDLSHLIAQSKLPLIATAKATPVLNAL- 218
++DR R+ +A+ QC R M P+ +D L L A L+ + P+ + L
Sbjct: 120 PGKLDRWRRLARSAALQCGRSEPMEIAAPLSLDAL-LLEAGEYDALLMPWELAPLHSPLP 178
Query: 219 ---TSLEKQASGLIIIGPEGDFT 238
+L + S L ++GPEG F+
Sbjct: 179 LLREALAEAESALGLVGPEGGFS 201
>F8BMI9_OLICM (tr|F8BMI9) Ribosomal RNA small subunit methyltransferase E
OS=Oligotropha carboxidovorans (strain OM4) GN=rsmE PE=3
SV=1
Length = 246
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 105/206 (50%), Gaps = 18/206 (8%)
Query: 41 PRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGI 100
PR F + P G V + ++ ++ VLRLS D V +FNG+ G I R
Sbjct: 9 PRLFVDA-PLGAGREVALAREQGHYLGNVLRLSASDTVLVFNGRDGEWRAQITGRKR--- 64
Query: 101 DFVALTDMEIIPP--PNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSSSI 158
LT +E P P LH+ F LK R D++V+K E+GAS +TP LT+ + +
Sbjct: 65 -LEQLTPLEQTRPQDPPCDLHLL--FAPLKHARLDYMVQKAVEMGASRLTPTLTQ-FTQV 120
Query: 159 SENRVDRLERVILAASKQCQRLHEMIFKPPVDIDDLSHLIAQ--SKLPLIATAKATPVLN 216
S ++R+ + A++QC L+ P+ L+ +A+ K L+ +A P +
Sbjct: 121 SRINLERMRANAIEAAEQCGILNLPEIDEPL---PLTGRLAERDGKRLLVFCDEAAPQAS 177
Query: 217 ALTSLEKQAS--GL-IIIGPEGDFTE 239
L +L++ A+ GL ++IGPEG F+E
Sbjct: 178 PLAALKEAANDGGLDVLIGPEGGFSE 203
>B6JIY7_OLICO (tr|B6JIY7) Ribosomal RNA small subunit methyltransferase E
OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM
1227 / OM5) GN=rsmE PE=3 SV=1
Length = 246
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 105/206 (50%), Gaps = 18/206 (8%)
Query: 41 PRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGI 100
PR F + P G V + ++ ++ VLRLS D V +FNG+ G I R
Sbjct: 9 PRLFVDA-PLGAGREVALAREQGHYLGNVLRLSASDTVLVFNGRDGEWRAQITGRKR--- 64
Query: 101 DFVALTDMEIIPP--PNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSSSI 158
LT +E P P LH+ F LK R D++V+K E+GAS +TP LT+ + +
Sbjct: 65 -LEQLTPLEQTRPQDPPCDLHLL--FAPLKHARLDYMVQKAVEMGASRLTPTLTQ-FTQV 120
Query: 159 SENRVDRLERVILAASKQCQRLHEMIFKPPVDIDDLSHLIAQ--SKLPLIATAKATPVLN 216
S ++R+ + A++QC L+ P+ L+ +A+ K L+ +A P +
Sbjct: 121 SRINLERMRANAIEAAEQCGILNLPEIDEPL---PLTGRLAERDGKRLLVFCDEAAPQAS 177
Query: 217 ALTSLEKQAS--GL-IIIGPEGDFTE 239
L +L++ A+ GL ++IGPEG F+E
Sbjct: 178 PLAALKEAANDGGLDVLIGPEGGFSE 203
>J2JTR3_9FLAO (tr|J2JTR3) Ribosomal RNA small subunit methyltransferase E
OS=Chryseobacterium sp. CF314 GN=PMI13_02426 PE=3 SV=1
Length = 229
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 94/190 (49%), Gaps = 12/190 (6%)
Query: 54 NVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIR-NMDRTGIDFVAL-TDMEII 111
N V + +E H+ KVLR+ + + + + +GKG L G + + GID A+ TD
Sbjct: 11 NKVVINDEEQQHILKVLRMKDGEEIHVTDGKGSLASGTLMIEGKKAGIDVSAIKTDF--- 67
Query: 112 PPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSSSISENRVDRLERVIL 171
P +LH+ T R ++ VEK E+G S +T +LTE++ + N D++ + +
Sbjct: 68 PDFEPKLHIAIA-PTKNIDRIEFFVEKAVEMGISEITFVLTEKTERKNIN-TDKIRKQSI 125
Query: 172 AASKQCQRLHEMIFKPPVDIDDLSHLIAQSKLPLIATAKATPVLN--ALTSLEKQASGLI 229
AASKQ R H F D+ S + +++ A L L ++ K S
Sbjct: 126 AASKQSLRFH---FPIINDVVKFSDFLKNTEIKNTFVAHCNENLERIELKNISKTGSYTF 182
Query: 230 IIGPEGDFTE 239
+IGPEGDF++
Sbjct: 183 LIGPEGDFSD 192
>R4RT38_9PSED (tr|R4RT38) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas protegens CHA0 GN=rsmE PE=4 SV=1
Length = 239
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 98/206 (47%), Gaps = 16/206 (7%)
Query: 40 LPRFFSE-TLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRT 98
L RFF + TL + + Q ++ +VLR++ +Q+F+G G G + + +
Sbjct: 3 LSRFFIDATLSLGEHELPEAQAH---YIGRVLRMAEGAALQVFDGSGTEFRGALVEVGKK 59
Query: 99 GIDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSS-S 157
+ V L + + L + G G +G R DW ++K TELG S +TP+ +ER
Sbjct: 60 RVR-VQLNE-SFAGQEESPLRIHLGQGLSRGERMDWAIQKATELGVSEITPIFSERCEVR 117
Query: 158 ISENRVDR----LERVILAASKQCQRLHEMIFKPPVDIDDLSHLIAQSKLPLIATAKATP 213
+ + R D+ +V ++A +QC R + PPV + D I Q++ L P
Sbjct: 118 LKDERADKRLLHWRQVAISACEQCGRSQVPVIHPPVLLAD---WIKQARADLKLVLH--P 172
Query: 214 VLNALTSLEKQASGLIIIGPEGDFTE 239
V L S K AS +IGPEG T+
Sbjct: 173 VAQPLESHAKPASLAFLIGPEGGLTD 198
>B7GKD1_ANOFW (tr|B7GKD1) Ribosomal RNA small subunit methyltransferase E
OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1)
GN=Aflv_0838 PE=3 SV=1
Length = 252
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 104/213 (48%), Gaps = 18/213 (8%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
L R+F G+ V + GD+ H+ +V+R++ DR+ N + E + +++
Sbjct: 4 LQRYFVRN-EQIVGDHVMISGDDVHHIGRVMRMNEGDRLLCCNERS---ETMLCEIEQIS 59
Query: 100 IDFVALTDMEIIPPPNTQL--HVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERS-- 155
DFV ++ I N +L HV+ G LKG + + +++K TELGA PL+T RS
Sbjct: 60 NDFVRCRIIQWIEA-NVELPVHVYVASGLLKGDKYELVLQKGTELGAKGFLPLITSRSIV 118
Query: 156 ---SSISENRVDRLERVILAASKQCQRLHEMIFKPPVDIDDL---SHLIAQSKLPLIATA 209
+ +V+R ++++ A++Q R + P+ I +L +H I + A
Sbjct: 119 KWDEKKGDKKVERWQKIVKEAAEQSHRAYMPSVYAPMTIRELIAWAHDIHYKCIAYEEEA 178
Query: 210 KA---TPVLNALTSLEKQASGLIIIGPEGDFTE 239
K + L ++ K+ S LI+ GPEG +E
Sbjct: 179 KEGHHRSFAHLLQTMNKEDSLLIVFGPEGGLSE 211
>H0SR75_9BRAD (tr|H0SR75) Ribosomal RNA small subunit methyltransferase E
OS=Bradyrhizobium sp. ORS 375 GN=BRAO375_720025 PE=3
SV=1
Length = 248
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 97/201 (48%), Gaps = 10/201 (4%)
Query: 41 PRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGI 100
PR F + P +G V + ++ ++ VLRL DRV +FNG+ G + I R +
Sbjct: 9 PRLFVDA-PLLEGGAVPLDRNQSNYLGNVLRLGAGDRVLVFNGRDGEWQATIAGRKRADL 67
Query: 101 DFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSSSISE 160
LT + I P + + F LK R D++V+K E+GA+ + P++T R + +S
Sbjct: 68 ----LTVQQRIRPQDRLPDIAYVFAPLKHARLDYIVQKAVEMGAAVLQPVVT-RHTQVSR 122
Query: 161 NRVDRLERVILAASKQCQRLHEMIFKPPVDIDDLSHLIAQSKLPLI---ATAKATPVLNA 217
+R+ ++ A++QC L K PV ++ ++L + A A PV A
Sbjct: 123 INGERMRANVIEAAEQCGILSLAAVKDPVPLERFLRERPDARLLVFCDEAADVADPV-QA 181
Query: 218 LTSLEKQASGLIIIGPEGDFT 238
L L + ++IGPEG F
Sbjct: 182 LRGLGEHGGIDLLIGPEGGFA 202
>H0BSE3_9BURK (tr|H0BSE3) Ribosomal RNA small subunit methyltransferase E
OS=Acidovorax sp. NO-1 GN=KYG_01397 PE=3 SV=1
Length = 245
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 83/183 (45%), Gaps = 13/183 (7%)
Query: 67 TKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPPPNTQLHVFSGFGT 126
+VLRL D + LFNG+GG E + M R+ + + T + +H+ +G
Sbjct: 26 VQVLRLQPGDALMLFNGEGGEFEATVLKMGRSDVRVLVGTHHAVEREAPRAVHLLAGITA 85
Query: 127 LKGGRADWLVEKCTELGASSVTPLLTERS-----SSISENRVDRLERVILAASKQCQRLH 181
+ R DWLVEK TELG +S+TPL+ ERS +E ++ + V +AA +QC R
Sbjct: 86 NE--RMDWLVEKATELGVASITPLVAERSVLKLKGERAEKKIAHWQAVAVAACEQCGRNR 143
Query: 182 EMIFKPPVDIDDLSHLIAQS------KLPLIATAKATPVLNALTSLEKQASGLIIIGPEG 235
+ VD+ Q+ +L L A P+ A + + GPEG
Sbjct: 144 VPVVHNAVDLAAWMRTQVQAPALDVQRLLLSLRAGTAPLHTAAALSPPSGPVVFLSGPEG 203
Query: 236 DFT 238
+
Sbjct: 204 GLS 206
>F3XTD8_9FLAO (tr|F3XTD8) Ribosomal RNA small subunit methyltransferase E
OS=Capnocytophaga sp. oral taxon 329 str. F0087
GN=HMPREF9074_02006 PE=3 SV=1
Length = 242
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 89/183 (48%), Gaps = 9/183 (4%)
Query: 61 DEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPPPNTQLHV 120
+E H+ KVLR D + + NGKG L EG + + L E I P LH+
Sbjct: 21 EESQHIAKVLRKKQGDTLHITNGKGFLFEGQLSFASPKQCEVSILKCQEQIHRP-YHLHL 79
Query: 121 FSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSSSISENRVDRLERVILAASKQCQRL 180
T R +W +EK TE+G +TP++ + S S +++R E++IL+A KQ +
Sbjct: 80 VVA-PTKMNERYEWFLEKATEIGIDEITPIICQHSERTSL-KLERFEKIILSAMKQSLQC 137
Query: 181 HEMIFKPPV-DIDDLSHLIAQSKLPLIATAKATPVL---NALTSLEKQASGLIIIGPEGD 236
+ P+ ++ + IA + + NALT L ++ + I+IGPEGD
Sbjct: 138 YLPTLNSPITSAAFFKQMMTDTSDKYIAHCQENEKILLSNALTPLSERIT--ILIGPEGD 195
Query: 237 FTE 239
F+E
Sbjct: 196 FSE 198
>C3X6A3_OXAFO (tr|C3X6A3) Ribosomal RNA small subunit methyltransferase E
OS=Oxalobacter formigenes HOxBLS GN=OFAG_01892 PE=3 SV=1
Length = 243
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 102/208 (49%), Gaps = 18/208 (8%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
+ R F + P + G + + D H+ V+RLS + + LFNG+GG I R
Sbjct: 1 MTRLFCD-FPLAVGACLDLPKDTARHIM-VVRLSRGEAITLFNGQGGEYRARILETGRNR 58
Query: 100 I--DFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERS-- 155
+ + V+ + E+ P L G + G+ DW++EK ELG + PL T+RS
Sbjct: 59 VRAEIVSFSPHEVELPYEISLVQ----GIPEAGKMDWIIEKAAELGVHRIVPLATQRSVV 114
Query: 156 ---SSISENRVDRLERVILAASKQCQRLHEMIFKPPVDIDDLSHLIAQSKLP--LIATAK 210
+ E R+ R + ++++AS+QC R + PV+ D + S P ++ + +
Sbjct: 115 RVNADRIEKRLARWQSIVVSASEQCGRNRLLAIGQPVNFDA---YLQNSPEPSKIMFSPR 171
Query: 211 ATPVLNALTSLEKQASGLIIIGPEGDFT 238
A+ L + + +K + ++IGPEG F+
Sbjct: 172 ASHSLASWATGQKPHAISLLIGPEGGFS 199
>C2M5T7_CAPGI (tr|C2M5T7) Ribosomal RNA small subunit methyltransferase E
OS=Capnocytophaga gingivalis ATCC 33624
GN=CAPGI0001_2163 PE=3 SV=1
Length = 243
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 102/202 (50%), Gaps = 9/202 (4%)
Query: 43 FFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDF 102
F++++L P V +E H+ KVLR D + + +G+G L E I+ +
Sbjct: 4 FYNDSLYPQVQEVT-FDKEESNHIHKVLRKKTGDLLFITDGRGYLYEAQIQYITDKKCTA 62
Query: 103 VALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSSSISENR 162
L+ + P P LH+ T R +W +EK TE+G VTP+L + S + +
Sbjct: 63 HILSH-SLAPTPAYHLHIAVA-PTKMNERYEWFLEKATEIGVHEVTPILCDHSERKT-IK 119
Query: 163 VDRLERVILAASKQCQRLHEMIFKPPVDIDD-LSHLIAQSKLPLIATAKATP---VLNAL 218
+R E+++L+A KQ + ++ PP+ + + L + + S +A + +L+ L
Sbjct: 120 TERFEKILLSAMKQSLQCYKPQLNPPISLLEWLDTIESNSVGKYVAHCQEGARVLLLDRL 179
Query: 219 TSLEKQASGL-IIIGPEGDFTE 239
L ++ + L ++IGPEGDF++
Sbjct: 180 EELPQETTNLWVLIGPEGDFSQ 201
>Q2KC21_RHIEC (tr|Q2KC21) Ribosomal RNA small subunit methyltransferase E
OS=Rhizobium etli (strain CFN 42 / ATCC 51251)
GN=RHE_CH00804 PE=3 SV=1
Length = 245
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 91/196 (46%), Gaps = 13/196 (6%)
Query: 49 PPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDM 108
P S G V D+F ++ VLR+ + + LFNG+ G + + R I A+
Sbjct: 15 PLSAGAAVEANADQFNYLANVLRMEDGAEILLFNGRDGEWKATLSFPTRKRILLTAIEAT 74
Query: 109 EIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSSSISENRVDRLER 168
P P LH F LK GR D+LV+K E+GA + P++T+ N +D+L
Sbjct: 75 RPQPAP-CDLHYL--FAPLKVGRLDYLVQKAVEMGAGRLQPVMTQHVQGKITN-LDKLRA 130
Query: 169 VILAASKQCQRLHEMIFKPPVDIDDLSHLIAQSKLPLI-----ATAKATPVLNALTSLEK 223
++ A++QC L PV + DL + + A PVL A+ E+
Sbjct: 131 NVVEAAEQCGVLAIPEVAEPVKLSDLLDRWPSERRIIYCDEGDAGQNPLPVLAAIQ--ER 188
Query: 224 QASGLIIIGPEGDFTE 239
+ +++GPEG F+E
Sbjct: 189 HLA--LLVGPEGGFSE 202
>J2NR80_9PSED (tr|J2NR80) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas sp. GM21 GN=PMI22_02614 PE=3 SV=1
Length = 239
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 97/206 (47%), Gaps = 16/206 (7%)
Query: 40 LPRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTG 99
L RFF + P S G + + +++VLR++ D +QLF+G G + + +
Sbjct: 3 LSRFFIDA-PLSTGEHELPEAQAHY-ISRVLRMAEGDALQLFDGSGHEFRATLVEVGKKR 60
Query: 100 IDFVALTDMEIIPPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSS-SI 158
+ V D + L + G G +G R DW ++K TELG + +TP+ ++R +
Sbjct: 61 V--VVQIDESFAGQVESPLAIHLGQGLSRGERMDWAIQKATELGVTEITPIFSDRCEVRL 118
Query: 159 SENRVDR----LERVILAASKQCQRLHEMIFKPP-VDIDDLSHLIAQSKLPLIATAKATP 213
+ R D+ +V ++A +QC R + PP + +D L AQ KL L P
Sbjct: 119 KDERADKRLMHWRQVAISACEQCGRSRVPVIHPPLLLVDWLKQTEAQLKLVL------HP 172
Query: 214 VLNALTSLEKQASGLIIIGPEGDFTE 239
V L S K + +IGPEG ++
Sbjct: 173 VAEPLVSHAKPGTLAFLIGPEGGLSD 198
>R4XRL9_ALCXX (tr|R4XRL9) Ribosomal RNA small subunit methyltransferase E
OS=Achromobacter xylosoxidans NH44784-1996
GN=NH44784_034361 PE=4 SV=1
Length = 243
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 93/215 (43%), Gaps = 31/215 (14%)
Query: 41 PRFFSETLPPSKGNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGI 100
PRFF + P S G + + H +VLRL + + LFNG GG + + G
Sbjct: 4 PRFFCDA-PLSAGARIALPEALAHHAIRVLRLRAGEPMVLFNGHGGEYPAALEIEGKAGF 62
Query: 101 DFVALTDMEIIPPPNTQL--HVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTER---- 154
+ D P +L + G G + DW+VEK ELGA+ V P+ +R
Sbjct: 63 AQLGAFD-----PREAELAGRITLVQGLPAGDKMDWVVEKAVELGAARVCPIAAQRSVLQ 117
Query: 155 -SSSISENRVDRLERVILAASKQCQRLHEMIFKPPVDIDDLSHLIA---------QSKLP 204
S S E RV +R+ +A++QC R M PV + D L A +
Sbjct: 118 LSGSRLEKRVAHWQRIAQSAAEQCGRNRLMAVDAPVTLADWLALPADGLRLLCHPDADAD 177
Query: 205 LIATAKATPVLNALTSLEKQASGLIIIGPEGDFTE 239
L ATP L +LT +++GPEG ++E
Sbjct: 178 LAGRLDATPGLQSLT---------LLVGPEGGWSE 203
>D7VXS9_9FLAO (tr|D7VXS9) Ribosomal RNA small subunit methyltransferase E
OS=Chryseobacterium gleum ATCC 35910 GN=HMPREF0204_11327
PE=3 SV=1
Length = 231
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 92/188 (48%), Gaps = 6/188 (3%)
Query: 53 GNVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEG-CIRNMDRTGIDFVALTDMEII 111
GN V + +E H+ KVLR+ + + + + +GKG L G I + GI+ + E +
Sbjct: 10 GNNVIINDEEQQHIVKVLRMKDGEDIHVTDGKGKLASGKLIIEGKKAGIEISEIK--ENM 67
Query: 112 PPPNTQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSSSISENRVDRLERVIL 171
P + LH+ T R ++ VEK E+G S +T L TE++ + N +D++ + +
Sbjct: 68 PEFSPMLHIAIA-PTKNIDRIEFFVEKAVEMGISEITILQTEKTERKNVN-IDKIRKQAV 125
Query: 172 AASKQCQRLHEMIFKPPVDIDDLSHLIAQSKLPLIATAKATPVLNALTSLEKQASGLIII 231
AASKQ R H + + I D I + +A AL ++ K +I
Sbjct: 126 AASKQSLRFHFPVINDLIKIQDFLKSI-DPEHTFVAHCHENLERIALKNIPKMEKLTFLI 184
Query: 232 GPEGDFTE 239
GPEGDF+E
Sbjct: 185 GPEGDFSE 192
>Q4K4H0_PSEF5 (tr|Q4K4H0) Ribosomal RNA small subunit methyltransferase E
OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477)
GN=PFL_5805 PE=3 SV=1
Length = 239
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 88/180 (48%), Gaps = 12/180 (6%)
Query: 65 HMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPPPNTQLHVFSGF 124
++ +VLR++ +Q+F+G G G + + + + V L + + L + G
Sbjct: 26 YIGRVLRMAEGAALQVFDGSGTEFRGALVEVGKKRVR-VQLNE-SFAGQQESPLRIHLGQ 83
Query: 125 GTLKGGRADWLVEKCTELGASSVTPLLTERSS-SISENRVDR----LERVILAASKQCQR 179
G +G R DW ++K TELG S +TP+ +ER + + R D+ +V ++A +QC R
Sbjct: 84 GLSRGERMDWAIQKATELGVSEITPIFSERCEVRLKDERADKRLLHWRQVAISACEQCGR 143
Query: 180 LHEMIFKPPVDIDDLSHLIAQSKLPLIATAKATPVLNALTSLEKQASGLIIIGPEGDFTE 239
+ PPV + D I Q++ L PV L S K AS +IGPEG T+
Sbjct: 144 SQVPVIHPPVLLAD---WIKQARADLKLVLH--PVAQPLESHAKPASLAFLIGPEGGLTD 198
>I3Z9S8_BELBD (tr|I3Z9S8) Ribosomal RNA small subunit methyltransferase E
(Precursor) OS=Belliella baltica (strain DSM 15883 / CIP
108006 / LMG 21964 / BA134) GN=Belba_3495 PE=3 SV=1
Length = 238
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 90/186 (48%), Gaps = 10/186 (5%)
Query: 58 VQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPPPNTQ 117
+ +E H+ KVLR + DRV+ NGKG L I + + + + + E +P +
Sbjct: 16 LDSEESKHLIKVLRKTQGDRVKFTNGKGCLFHCVILDSNPKSAK-IKIEEREFLPEDDYY 74
Query: 118 LHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSSSISENRVDRLERVILAASKQC 177
+H+ T R +W+VEK TE+G +T + + S S +++RLE+ I+AA KQ
Sbjct: 75 IHLAIS-PTKNSERMEWMVEKLTEIGVHEIT-FMESKYSERSHLKLERLEKKIIAACKQS 132
Query: 178 QRLHEMIFKPPVDIDDLSHLIAQSKLP----LIATAKATPVLNALTSLEKQASGLIIIGP 233
+ P + ++ L+ SK IA + ++ + LI+IGP
Sbjct: 133 LKTRVPKLNP---VRPMNELVQDSKFNTYQRFIAYVDKENDRHLFDKVKPDNAYLILIGP 189
Query: 234 EGDFTE 239
EGDF++
Sbjct: 190 EGDFSQ 195
>C6VZA6_DYAFD (tr|C6VZA6) Ribosomal RNA small subunit methyltransferase E
OS=Dyadobacter fermentans (strain ATCC 700827 / DSM
18053 / NS114) GN=Dfer_0449 PE=3 SV=1
Length = 235
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 98/195 (50%), Gaps = 20/195 (10%)
Query: 54 NVVRVQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMD--RTGIDFVALTDMEII 111
++ + +E H +KVLRL + D +Q+ NGKG L++ C N+ R G + + E
Sbjct: 10 HIFELDEEEARHSSKVLRLGSGDIIQVTNGKG-LLQKCRLNIQGRRVGYEVIESKTAERR 68
Query: 112 PPPNTQLHVFSGFG-TLKGGRADWLVEKCTELGASSVTPLLTERSSSISENRV---DRLE 167
P V T K R +W+VEK TE+G + ++TE ++ + NRV RL
Sbjct: 69 P-----FAVHMAIAPTRKAERNEWMVEKMTEIGVERIDFVVTEHTNPETLNRVVNLTRLN 123
Query: 168 RVILAASKQCQRLHEMIFKPPVDIDDLSHLI---AQSKLPLIATA-KATPVLNALTSLEK 223
R+ AA KQ Q+ + P + +++ A ++ LIA + V + + ++K
Sbjct: 124 RIAAAAMKQSQQF----YMPVITVNNKYEPFIKNAGDEVRLIAYVPEQNTVEHVFSKIKK 179
Query: 224 QASGLIIIGPEGDFT 238
A ++IGPEGDF+
Sbjct: 180 GADTTLLIGPEGDFS 194