Miyakogusa Predicted Gene

Lj1g3v0095180.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0095180.1 Non Chatacterized Hit- tr|A9PBB2|A9PBB2_POPTR
Putative uncharacterized protein OS=Populus trichocarp,59.38,0.000002,
,NODE_12946_length_516_cov_849.988342.path1.1
         (59 letters)

Database: trembl 
           41,451,118 sequences; 13,208,986,710 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A9PBB2_POPTR (tr|A9PBB2) Putative uncharacterized protein OS=Pop...    57   3e-06

>A9PBB2_POPTR (tr|A9PBB2) Putative uncharacterized protein OS=Populus
          trichocarpa PE=4 SV=1
          Length = 64

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/64 (59%), Positives = 40/64 (62%), Gaps = 5/64 (7%)

Query: 1  MMVTTDMMTLIPFTFRM-LFVITNRLTVAVLLCVNYN---YCLCMGRSCISNVDP-LVLG 55
          MMVTTDMMT I F F   LFVITNRL  +     NYN    C  M RSCISN+D  L LG
Sbjct: 1  MMVTTDMMTPISFAFSTGLFVITNRLNGSNPCVFNYNCSTSCFAMVRSCISNIDQTLALG 60

Query: 56 DYGK 59
          D GK
Sbjct: 61 DCGK 64