Miyakogusa Predicted Gene
- Lj0g3v0353889.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0353889.2 tr|D7KU36|D7KU36_ARALL DNA-directed RNA
polymerase OS=Arabidopsis lyrata subsp. lyrata
GN=ARALYDRAFT,27.49,4e-18,seg,NULL; beta and beta-prime subunits of
DNA dependent RNA-polymerase,NULL,CUFF.24477.2
(788 letters)
Database: trembl
41,451,118 sequences; 13,208,986,710 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
K7M0Q7_SOYBN (tr|K7M0Q7) DNA-directed RNA polymerase OS=Glycine ... 802 0.0
G7LG09_MEDTR (tr|G7LG09) DNA-directed RNA polymerase OS=Medicago... 751 0.0
K7MDF5_SOYBN (tr|K7MDF5) DNA-directed RNA polymerase OS=Glycine ... 689 0.0
I1MIR6_SOYBN (tr|I1MIR6) DNA-directed RNA polymerase OS=Glycine ... 686 0.0
K7MDF9_SOYBN (tr|K7MDF9) DNA-directed RNA polymerase OS=Glycine ... 684 0.0
K7MDF7_SOYBN (tr|K7MDF7) DNA-directed RNA polymerase OS=Glycine ... 682 0.0
M5XM01_PRUPE (tr|M5XM01) Uncharacterized protein OS=Prunus persi... 481 e-133
B9GWY0_POPTR (tr|B9GWY0) Predicted protein (Fragment) OS=Populus... 479 e-132
K4B027_SOLLC (tr|K4B027) DNA-directed RNA polymerase OS=Solanum ... 419 e-114
Q5D868_SPIOL (tr|Q5D868) DNA-directed RNA polymerase (Fragment) ... 417 e-113
R0FV63_9BRAS (tr|R0FV63) Uncharacterized protein OS=Capsella rub... 408 e-111
M5XPM8_PRUPE (tr|M5XPM8) Uncharacterized protein OS=Prunus persi... 407 e-111
Q1L5X7_SOLLC (tr|Q1L5X7) DNA-directed RNA polymerase (Fragment) ... 406 e-110
D7LEE8_ARALL (tr|D7LEE8) DNA-directed RNA polymerase OS=Arabidop... 399 e-108
M4C7I4_BRARP (tr|M4C7I4) DNA-directed RNA polymerase OS=Brassica... 364 8e-98
K3YP74_SETIT (tr|K3YP74) DNA-directed RNA polymerase OS=Setaria ... 360 1e-96
B9F2S6_ORYSJ (tr|B9F2S6) DNA-directed RNA polymerase OS=Oryza sa... 355 3e-95
J3L9M9_ORYBR (tr|J3L9M9) DNA-directed RNA polymerase OS=Oryza br... 353 2e-94
M0SC38_MUSAM (tr|M0SC38) DNA-directed RNA polymerase OS=Musa acu... 348 4e-93
I1IV91_BRADI (tr|I1IV91) DNA-directed RNA polymerase OS=Brachypo... 347 8e-93
A5BGS4_VITVI (tr|A5BGS4) Putative uncharacterized protein OS=Vit... 340 2e-90
M8BMS2_AEGTA (tr|M8BMS2) DNA-directed RNA polymerase II subunit ... 338 6e-90
I1NXC6_ORYGL (tr|I1NXC6) DNA-directed RNA polymerase OS=Oryza gl... 324 1e-85
B8AHU1_ORYSI (tr|B8AHU1) DNA-directed RNA polymerase OS=Oryza sa... 305 3e-80
K3Y4N1_SETIT (tr|K3Y4N1) DNA-directed RNA polymerase OS=Setaria ... 265 7e-68
N1R5E0_AEGTA (tr|N1R5E0) Uncharacterized protein OS=Aegilops tau... 264 1e-67
J3L864_ORYBR (tr|J3L864) DNA-directed RNA polymerase OS=Oryza br... 259 4e-66
M0XPZ5_HORVD (tr|M0XPZ5) DNA-directed RNA polymerase OS=Hordeum ... 256 3e-65
M8C0F8_AEGTA (tr|M8C0F8) DNA-directed RNA polymerase II subunit ... 249 4e-63
C5XJ93_SORBI (tr|C5XJ93) DNA-directed RNA polymerase (Fragment) ... 241 6e-61
Q5JJW0_ORYSJ (tr|Q5JJW0) DNA-directed RNA polymerase OS=Oryza sa... 232 4e-58
B9EWM0_ORYSJ (tr|B9EWM0) DNA-directed RNA polymerase OS=Oryza sa... 228 1e-56
R7WAM9_AEGTA (tr|R7WAM9) DNA-directed RNA polymerase subunit A O... 221 1e-54
B9GM05_POPTR (tr|B9GM05) Predicted protein OS=Populus trichocarp... 220 2e-54
B8A9M1_ORYSI (tr|B8A9M1) DNA-directed RNA polymerase OS=Oryza sa... 219 5e-54
G7LG21_MEDTR (tr|G7LG21) Protein DCL OS=Medicago truncatula GN=M... 194 1e-46
M0WRB9_HORVD (tr|M0WRB9) DNA-directed RNA polymerase OS=Hordeum ... 160 3e-36
M0WRB8_HORVD (tr|M0WRB8) DNA-directed RNA polymerase OS=Hordeum ... 160 3e-36
M0V9F4_HORVD (tr|M0V9F4) Uncharacterized protein OS=Hordeum vulg... 147 2e-32
C5XUR5_SORBI (tr|C5XUR5) Putative uncharacterized protein Sb04g0... 139 4e-30
Q1L5X8_9BRYO (tr|Q1L5X8) DNA-directed RNA polymerase (Fragment) ... 135 6e-29
M0V9F5_HORVD (tr|M0V9F5) Uncharacterized protein OS=Hordeum vulg... 135 7e-29
Q1L5X9_MARPO (tr|Q1L5X9) DNA-directed RNA polymerase (Fragment) ... 121 1e-24
I1NVI7_ORYGL (tr|I1NVI7) DNA-directed RNA polymerase OS=Oryza gl... 120 2e-24
Q1L5Y1_9MONI (tr|Q1L5Y1) DNA-directed RNA polymerase (Fragment) ... 117 1e-23
M0XPZ7_HORVD (tr|M0XPZ7) Uncharacterized protein OS=Hordeum vulg... 117 2e-23
M4EFP9_BRARP (tr|M4EFP9) DNA-directed RNA polymerase OS=Brassica... 112 9e-22
K7LMQ8_SOYBN (tr|K7LMQ8) DNA-directed RNA polymerase OS=Glycine ... 110 3e-21
M4FIT1_BRARP (tr|M4FIT1) Uncharacterized protein OS=Brassica rap... 109 4e-21
K7K551_SOYBN (tr|K7K551) DNA-directed RNA polymerase OS=Glycine ... 108 7e-21
B9GKP9_POPTR (tr|B9GKP9) DNA-directed RNA polymerase OS=Populus ... 107 2e-20
I1JA29_SOYBN (tr|I1JA29) DNA-directed RNA polymerase OS=Glycine ... 107 3e-20
Q1L5X6_SOLLC (tr|Q1L5X6) DNA-directed RNA polymerase (Fragment) ... 106 3e-20
K4CP21_SOLLC (tr|K4CP21) DNA-directed RNA polymerase OS=Solanum ... 106 3e-20
Q1L5X5_ANTMA (tr|Q1L5X5) DNA-directed RNA polymerase (Fragment) ... 102 7e-19
F6HUI3_VITVI (tr|F6HUI3) DNA-directed RNA polymerase OS=Vitis vi... 102 9e-19
B9RC12_RICCO (tr|B9RC12) DNA-directed RNA polymerase OS=Ricinus ... 100 2e-18
R0HUP7_9BRAS (tr|R0HUP7) Uncharacterized protein OS=Capsella rub... 99 6e-18
D7KU36_ARALL (tr|D7KU36) DNA-directed RNA polymerase OS=Arabidop... 99 7e-18
M5WEG2_PRUPE (tr|M5WEG2) Uncharacterized protein OS=Prunus persi... 96 4e-17
J3MZZ4_ORYBR (tr|J3MZZ4) DNA-directed RNA polymerase OS=Oryza br... 92 8e-16
J3M0K5_ORYBR (tr|J3M0K5) DNA-directed RNA polymerase OS=Oryza br... 91 2e-15
G7KER5_MEDTR (tr|G7KER5) DNA-directed RNA polymerase OS=Medicago... 91 2e-15
I1HLK0_BRADI (tr|I1HLK0) Uncharacterized protein OS=Brachypodium... 90 4e-15
B9G500_ORYSJ (tr|B9G500) DNA-directed RNA polymerase OS=Oryza sa... 89 8e-15
B8BED0_ORYSI (tr|B8BED0) DNA-directed RNA polymerase OS=Oryza sa... 89 9e-15
A9SIX8_PHYPA (tr|A9SIX8) DNA-directed RNA polymerase OS=Physcomi... 87 3e-14
I1PP12_ORYGL (tr|I1PP12) Uncharacterized protein OS=Oryza glaber... 86 5e-14
Q0JAW4_ORYSJ (tr|Q0JAW4) Os04g0572600 protein OS=Oryza sativa su... 85 1e-13
M0TPQ4_MUSAM (tr|M0TPQ4) DNA-directed RNA polymerase OS=Musa acu... 84 3e-13
C5YE51_SORBI (tr|C5YE51) DNA-directed RNA polymerase OS=Sorghum ... 84 3e-13
Q01JX0_ORYSA (tr|Q01JX0) DNA-directed RNA polymerase OS=Oryza sa... 83 3e-13
C0JR68_MAIZE (tr|C0JR68) DNA-directed RNA polymerase OS=Zea mays... 79 6e-12
C0JR65_MAIZE (tr|C0JR65) DNA-directed RNA polymerase OS=Zea mays... 79 6e-12
A5BZZ3_VITVI (tr|A5BZZ3) DNA-directed RNA polymerase OS=Vitis vi... 79 1e-11
K3XDU8_SETIT (tr|K3XDU8) DNA-directed RNA polymerase OS=Setaria ... 78 1e-11
Q0IZR2_ORYSJ (tr|Q0IZR2) Os09g0555200 protein (Fragment) OS=Oryz... 75 1e-10
M0XPZ6_HORVD (tr|M0XPZ6) Uncharacterized protein OS=Hordeum vulg... 69 7e-09
I1QR54_ORYGL (tr|I1QR54) Uncharacterized protein OS=Oryza glaber... 66 6e-08
M0XPZ8_HORVD (tr|M0XPZ8) Uncharacterized protein OS=Hordeum vulg... 64 3e-07
A9SIR4_PHYPA (tr|A9SIR4) DNA-directed RNA polymerase OS=Physcomi... 60 5e-06
M1BKB4_SOLTU (tr|M1BKB4) Uncharacterized protein OS=Solanum tube... 59 7e-06
>K7M0Q7_SOYBN (tr|K7M0Q7) DNA-directed RNA polymerase OS=Glycine max PE=3 SV=1
Length = 2020
Score = 802 bits (2071), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 482/951 (50%), Positives = 602/951 (63%), Gaps = 169/951 (17%)
Query: 1 MLEELKINMAEVFQRCQEKLRSLNRKRKYYQTLKSTELFFSESCASPNFSSPCVTFISLD 60
MLEELKI+MA VF++C E+L+S +RK+K Q LK+ EL FSESC+S + ++PC+TF +
Sbjct: 953 MLEELKISMANVFEKCLERLKSFSRKKKVNQYLKNIELSFSESCSSSHPAAPCLTFWLKN 1012
Query: 61 GDG-LDKTTEILADVICPVLLGTIIQGDPRISSANITWINPDSNAWVRNPSKSSNGELAL 119
D LD ++L++ ICPVL TII+GDPRISSA+I W++PD+N WVRNP KSSNGELAL
Sbjct: 1013 HDSDLDNAVKVLSENICPVLFETIIKGDPRISSASIIWVSPDTNTWVRNPYKSSNGELAL 1072
Query: 120 DIILEEAAVKQSGDAWRIVLDSCLPVLNLIDTRRSIPYAIKQVQELLGISCTFDQAIQRL 179
DI+LEE AVKQSGDAWRIVLDSCLPVL+LIDTRRSIPYAIKQ+QELLGISCTFDQAIQR+
Sbjct: 1073 DIVLEEEAVKQSGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQIQELLGISCTFDQAIQRV 1132
Query: 180 AASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDATLFTPKK 239
AASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKAL+RQLNIQVPFTDATLFTPKK
Sbjct: 1133 AASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALSRQLNIQVPFTDATLFTPKK 1192
Query: 240 CFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSRFDVLWDAKERKSNELEGMDVYNFLHM 299
CFERAAEKCHTDSLSSIVASCSWGK VAVGTGS+FD++WD+ E KSNE+EGMDVY+FLHM
Sbjct: 1193 CFERAAEKCHTDSLSSIVASCSWGKHVAVGTGSKFDIVWDSSEIKSNEIEGMDVYSFLHM 1252
Query: 300 VKSLINGEEENDACXXXXXXXXXXXXNADYSLSPQHTSGVDAVFEETFEAMNGPESNGWG 359
VKS+ NGEEE DAC D +SPQH SG +AVFEE E +NG SNGW
Sbjct: 1253 VKSVTNGEEETDACLGEDIDDLLEEEYMDLGMSPQHNSGFEAVFEENPEVLNGSTSNGWD 1312
Query: 360 ATTDRTETKSTQWSAWESNKAETKDGGSQRVHEDSWTSRDVMKDDSQMTNAWDGNV--EQ 417
++++T++K+ +WS W S+ KDG S+ E+SW + V ++DS +NAW+ + +Q
Sbjct: 1313 VSSNQTQSKTNEWSGWASS---NKDGRSETAQENSW-GKTVNQEDSSKSNAWNTSTTADQ 1368
Query: 418 TKTISNDWTAWGKNKSEIQDNVAEKAEGECGSSEMWKTAV-------------------- 457
TKT SN+W+ WG NKSEI ++ + + S W T+
Sbjct: 1369 TKTKSNEWSDWGSNKSEIPAGGSKAVQEDSSKSNAWNTSTTSNQTKTKSKEWSAWGSNKS 1428
Query: 458 ---------IQEGSSKSNAWKSN-----IEQRSDE-DSWTSQKLKAD------VIQDSSK 496
+QE SSKSN W ++ + +S+E +W S K + V +DSSK
Sbjct: 1429 EIPACGSKAVQEDSSKSNTWNTSTTADQTKTKSNEWSAWGSNKSEIPAGGSKAVQEDSSK 1488
Query: 497 PSSWG-------AKPKSNDSSNWGRNKDEIQDVVSRRAEDDSWSS---KKQLSSDATQED 546
++W K KSN+ S WG NK EI S+ ++DS S ++D T+
Sbjct: 1489 SNAWNRSTTADQTKTKSNEWSAWGSNKSEIPAGGSKAVQEDSSKSNAWNTSTTADQTKTK 1548
Query: 547 SSKFSFWGGNK-------------------------DTTKPKSNDWSSWGGNRDGIQDGG 581
S+++S WG NK D TK KSN+WS+ N+ I GG
Sbjct: 1549 SNEWSAWGSNKSEIPAGGSKAVQEDSSKAWNTSTTADQTKTKSNEWSARVSNKSEIPAGG 1608
Query: 582 SKRAQDDSWSSQK---DVTRESSSKVDAWGANNEASNPKSNDWSAWGKNKDGTQD----- 633
SK Q+DSW S K DV +E +S++ AW A N A KSN+WS WGK KD TQ+
Sbjct: 1609 SKAVQEDSWGSSKWKADVAQEDNSRLGAWDA-NAADQTKSNEWSGWGKKKDVTQEDNVQH 1667
Query: 634 --GGSER----AQDDSSSLGKWKA---------------------------ESQVEADT- 659
G +R Q+D+S G W A + V+ D+
Sbjct: 1668 SWGSGKRKDKVTQEDNSGSGDWGANRTDLAITKSSEWSSWGKNKTEIPAGGSANVQNDSW 1727
Query: 660 -------VQEDSSKSKAWERNSDNV------------------------------KVGNS 682
Q+D+S AW NS + KVGN+
Sbjct: 1728 GLGKLNDTQKDNSGCGAWGENSGSAWVRNKAETIDGGSEKPQEDAWNSGNWKAESKVGNT 1787
Query: 683 SWGKPKFPETQAWDPQKETNQGAGSRGWDSQIASANSDSDRNFQWGKQGRESFKK----- 737
+WGKPK E+ AWD ++NQ + S+GW+S IASANS++++ FQWGK GR+SFKK
Sbjct: 1788 TWGKPKSSESHAWDSHNQSNQNSSSQGWESHIASANSENEKGFQWGK-GRDSFKKNRFEG 1846
Query: 738 SQGWGSNAGDMKNKNRPGRAPGPRLDMYSSEEQDILKDIEPIVQSIRRIMQ 788
SQG GSNAGD KN+NRP RAPG RLD+YSSEEQD+LKDIEPI+QSIRRIMQ
Sbjct: 1847 SQGRGSNAGDWKNRNRPPRAPGQRLDIYSSEEQDVLKDIEPIMQSIRRIMQ 1897
>G7LG09_MEDTR (tr|G7LG09) DNA-directed RNA polymerase OS=Medicago truncatula
GN=MTR_8g038990 PE=3 SV=1
Length = 2032
Score = 751 bits (1938), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 443/905 (48%), Positives = 548/905 (60%), Gaps = 194/905 (21%)
Query: 2 LEELKINMAEVFQRCQEKLRSLNRKRKYYQTLKSTELFFSESCASPNFSSPCVTFISLDG 61
LEELKINM EV+Q+CQEKL S +RK+K K TEL FSE C S+PCVTF+ DG
Sbjct: 1035 LEELKINMTEVYQKCQEKLNSFSRKKKLSPFFKRTELIFSEFC-----SAPCVTFLWPDG 1089
Query: 62 DGLDKTTEILADVICPVLLGTIIQGDPRISSANITWINPDSNAWVRNPSKSSNGELALDI 121
LD+TT++LAD+ICPVLL TIIQGDPRISSA+I W+NP +N WVRNPSKSSNGELALD+
Sbjct: 1090 VDLDQTTKVLADMICPVLLETIIQGDPRISSASIIWVNPGTNTWVRNPSKSSNGELALDV 1149
Query: 122 ILEEAAVKQSGDAWRIVLDSCLPVLNLIDTRRSIPYAIKQVQELLGISCTFDQAIQRLAA 181
ILE+ AVKQSGDAWRIVLDSCLPVL+LIDTRRSIPYAIKQ+QELLGI+CTFDQAIQRLAA
Sbjct: 1150 ILEKEAVKQSGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQIQELLGIACTFDQAIQRLAA 1209
Query: 182 SVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDATLF------ 235
SV+MVAKGVLREHLILLASSMTCGGNLVGFNTGGYK LARQL+IQVPFTDATLF
Sbjct: 1210 SVRMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKTLARQLDIQVPFTDATLFVSALVI 1269
Query: 236 --------------------TPKKCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSRFD 275
TP+KCFERAAEK H+DSLSSIVASCSWGK VAVGTGS+FD
Sbjct: 1270 SKLQDVFCYYFSYFVNVIMQTPRKCFERAAEKHHSDSLSSIVASCSWGKHVAVGTGSKFD 1329
Query: 276 VLWDAKERKSNELEGMDVYNFLHMVKSLINGEEENDACXXXXXXXXXXXXNADYSLSPQH 335
++WD KE K+NE+EGM+VY FL+MVK L NGEEE +AC N D+ +SPQH
Sbjct: 1330 IVWDPKEIKTNEIEGMNVYKFLNMVKGLANGEEETNACLGEDIDDLFDDENGDFDMSPQH 1389
Query: 336 TSGVDAVFEETFEAMNGPESNGWGATTDRTETKSTQWSAWESNKAETKDGGSQRVHEDSW 395
SG DAVF+ETFE NG SNG W+SNK +
Sbjct: 1390 ASGFDAVFDETFELPNGSTSNG-----------------WDSNKDQ-------------- 1418
Query: 396 TSRDVMKDDSQMTNAWDGNVEQTKTISNDWTAWGKNKSEIQDNVAEKAEGECG------- 448
++Q T SNDW+ WG NKS++Q +V ++ +
Sbjct: 1419 -------------------IDQPNTNSNDWSGWGPNKSDLQVDVIQEDSSKSSAWGAATN 1459
Query: 449 -----SSEMWKTAVIQEGSSKSNAWKSNIEQRSDEDSW---TSQKL--------KADVIQ 492
S+ W AV+QE SSKS AW + Q S++ SW T+QK KA V +
Sbjct: 1460 QKSDQSASAWGKAVVQEDSSKSGAWGTATNQNSEQPSWGAATNQKSDQSASAWGKAVVQE 1519
Query: 493 DSSKPSSWG--------------AKPKSNDSSN--------------------------- 511
DSSK +WG A +N SS+
Sbjct: 1520 DSSKSGAWGNAKSVVQEDSSKSGAPANTNHSSDQSCWGQITGGEERAQGESGGTKKWKAD 1579
Query: 512 --------------WGRNKDEIQDVVSRRAEDDSWSSKK-QLSSDATQEDSSKFSFWGGN 556
WG +K E+ + S + +D SW+S+K + D +Q+DS K S WG
Sbjct: 1580 VSQEDSTNSGGWKAWGSSKPEVHEGESTKVQD-SWNSQKWKAGEDVSQKDSQKSSAWGA- 1637
Query: 557 KDTTKPKSND-WSSWGGNRDGIQDGGSKRAQDDSWSSQKDVTRESSSKVDAWGANNEASN 615
TKPKSND SSWG +D I ++ ++W + + + D+W A +N
Sbjct: 1638 ---TKPKSNDNRSSWGQKKDEIHVMPEDSSRSNAWEQKPENVK------DSWVAKVPVAN 1688
Query: 616 PKSNDWSAWGKNK-------DGTQDGGSERAQDDSSSLGKWKAESQVEADTVQEDSSKSK 668
S+WGK K D + + + +S W ++++ ++ + S +S+
Sbjct: 1689 ------SSWGKAKSPENRPWDSKNEPNNSFGKPNSQENEPWDSKNESDSSWGKPKSQESQ 1742
Query: 669 AWERNSDNVKVGNSSWGKPKFPETQAWDPQKETNQGAGSRGWDSQIASANSDSDRNFQWG 728
W+ +++ NSSWGKPK E WD + E+NQ AGSRGWDSQ+ASANS+SD++FQWG
Sbjct: 1743 PWDSKNES----NSSWGKPKSQENHPWDSKNESNQTAGSRGWDSQVASANSESDKSFQWG 1798
Query: 729 KQGRESFKK-----SQGWGSNAGDMKNKNRPGRAPGPRLDMYSSEEQDILKDIEPIVQSI 783
KQGR+SFKK SQ G NAGD KN++RP R PG R ++Y+ EEQDI+KDIEPIVQSI
Sbjct: 1799 KQGRDSFKKNRFEGSQSGGPNAGDWKNRSRPVRPPGQRFELYTPEEQDIMKDIEPIVQSI 1858
Query: 784 RRIMQ 788
RRIMQ
Sbjct: 1859 RRIMQ 1863
>K7MDF5_SOYBN (tr|K7MDF5) DNA-directed RNA polymerase OS=Glycine max PE=3 SV=1
Length = 2082
Score = 689 bits (1777), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/771 (53%), Positives = 502/771 (65%), Gaps = 99/771 (12%)
Query: 1 MLEELKINMAEVFQRCQEKLRSLNRKRKYYQTLKSTELFFSESCASPNFSSPCVTF--IS 58
MLEELKI+MA VF +C E+L+S ++K+K Q+LK+ EL FSESC+S + ++PC+TF +
Sbjct: 953 MLEELKISMAYVFDKCHERLKSFSQKKKVNQSLKNIELSFSESCSSSHPAAPCLTFWLKN 1012
Query: 59 LDGDGLDKTTEILADVICPVLLGTIIQGDPRISSANITWINPDSNAWVRNPSKSSNGELA 118
D D LD ++LA+ ICPVL TIIQGDPRISSA+I W++PD+N WVRNP KSSNGELA
Sbjct: 1013 YDSD-LDNAVKVLAEKICPVLFKTIIQGDPRISSASIIWVSPDTNTWVRNPYKSSNGELA 1071
Query: 119 LDIILEEAAVKQSGDAWRIVLDSCLPVLNLIDTRRSIPYAIKQVQELLGISCTFDQAIQR 178
LDIILE+ AVKQSGDAWR+VLD+CLPVL+LIDTRRSIPYAIKQ+QELLGISCTFDQAIQR
Sbjct: 1072 LDIILEKEAVKQSGDAWRVVLDACLPVLHLIDTRRSIPYAIKQIQELLGISCTFDQAIQR 1131
Query: 179 LAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDATLFTPK 238
+AASVKMVAKGVLREHLILLASSMTCGGNLVGFN GGYKAL+RQLNIQVPFTDATLFTPK
Sbjct: 1132 VAASVKMVAKGVLREHLILLASSMTCGGNLVGFNIGGYKALSRQLNIQVPFTDATLFTPK 1191
Query: 239 KCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSRFDVLWDAKERKSNELEGMDVYNFLH 298
KCFERAAEKCHTDSLSSIVASCSWGK VAVGTGS+FDV+WDA E KSNE+EGMDVY+FLH
Sbjct: 1192 KCFERAAEKCHTDSLSSIVASCSWGKHVAVGTGSKFDVVWDANEIKSNEIEGMDVYSFLH 1251
Query: 299 MVKSLINGEEENDACXXXXXXXXXXXXNADYSLSPQHTSGVDAVFEETFEAMNGPESNGW 358
MVKS NGEEE DAC D +SPQH SG +AVFEE E +NG SNGW
Sbjct: 1252 MVKSFTNGEEETDACLGEDIDDLLEEEYMDLGMSPQHNSGFEAVFEENPEVLNGSTSNGW 1311
Query: 359 GATTDRTETKSTQWSAW-ESNKAETKDGGSQRVHEDSWTSRDVMKDDSQMTNAWDGNV-- 415
++++ E+K+ +WS W SNKAE KDG S+ ++SW + V ++DS +N W +
Sbjct: 1312 DVSSNQGESKTNEWSGWASSNKAEIKDGRSEIAPKNSW-GKTVNQEDSSKSNPWSTSTIA 1370
Query: 416 EQTKTISNDWTAWGKNKSEI-----QDNVAEKAEG--ECGSSEMWKTAVIQEGSSKSNAW 468
+QTKT SN+W+AWG NKSEI N E +G E W V QE SSKSNAW
Sbjct: 1371 DQTKTKSNEWSAWGSNKSEIPVGWASSNKTEIKDGRSETAQENSWGKTVNQEDSSKSNAW 1430
Query: 469 KSNI--------------------------EQRSDEDSWTSQKLKADVIQ-DSSKPSSWG 501
++ + EDSW S K KADV Q D+S+ +W
Sbjct: 1431 NTSTTVDHANTKSNEWSAWGSNQSEIPAGGSKAVQEDSWGSSKWKADVAQEDNSRLGAWD 1490
Query: 502 A----KPKSNDSSNWGRNKDEIQDVVSRRAEDDS-------------WSSKKQLSSDATQ 544
A + KS++ S WG+ KD Q+ SR D+ W KK D TQ
Sbjct: 1491 ANAADQTKSSEWSGWGKKKDVTQEDNSRLGAWDANAADQTKSRDWSGWGKKK----DITQ 1546
Query: 545 EDSSKFSFWGGNKDTTKPKSNDWSSWGGNRDGIQDGGSKRAQDDS-------------WS 591
ED+S+ W N + KS++WS WG +D Q+ S+ D+ W
Sbjct: 1547 EDNSRLGAWDANA-ADQTKSSEWSGWGKKKDVTQEDNSRLGAWDANTADQTKSNEWSGWG 1605
Query: 592 SQKDVTRESSSKVDAWGANNEASNPKSNDWSAWGKNKDGTQDGGSERAQDDSSSLGKW-- 649
+K+VT+E +S++ AW AN A KSN+WS WGK K+ T Q+D+S G W
Sbjct: 1606 KKKEVTQEDNSRLGAWDANT-ADQTKSNEWSGWGKKKEVT--------QEDNSRFGAWDA 1656
Query: 650 KAESQVEA----------DTVQEDSSKSKAWERNSDNVKVGN--SSWGKPK 688
AE Q ++ D QED+S+ AW+ N+ + N S WGK K
Sbjct: 1657 NAEDQTKSNEWSGWGKKKDVTQEDNSRLGAWDANAADQTKSNEWSDWGKKK 1707
Score = 266 bits (681), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 211/526 (40%), Positives = 286/526 (54%), Gaps = 102/526 (19%)
Query: 354 ESNGWGATT--DRTETKSTQWSAWESNKAETKDGGSQRVHEDSWTSR----DVMKDDSQM 407
+SN W +T D TKS +WSAW SN++E GGS+ V EDSW S DV ++D+
Sbjct: 1426 KSNAWNTSTTVDHANTKSNEWSAWGSNQSEIPAGGSKAVQEDSWGSSKWKADVAQEDNSR 1485
Query: 408 TNAWDGNV-EQTKTISNDWTAWGKNKSEIQD----------NVAEKAEGECGSSEMWKTA 456
AWD N +QTK S++W+ WGK K Q+ N A++ + S K
Sbjct: 1486 LGAWDANAADQTK--SSEWSGWGKKKDVTQEDNSRLGAWDANAADQTKSRDWSGWGKKKD 1543
Query: 457 VIQEGSSKSNAWKSNIEQRSDEDSWTSQKLKADVIQ-DSSKPSSWGA----KPKSNDSSN 511
+ QE +S+ AW +N ++ W+ K DV Q D+S+ +W A + KSN+ S
Sbjct: 1544 ITQEDNSRLGAWDANAADQTKSSEWSGWGKKKDVTQEDNSRLGAWDANTADQTKSNEWSG 1603
Query: 512 WGRNKDEIQDVVSRRAEDDS-------------WSSKKQLSSDATQEDSSKFSFWGGNKD 558
WG+ K+ Q+ SR D+ W KK++ TQED+S+F W N +
Sbjct: 1604 WGKKKEVTQEDNSRLGAWDANTADQTKSNEWSGWGKKKEV----TQEDNSRFGAWDANAE 1659
Query: 559 TTKPKSNDWSSWGGNRDGIQDGGSKRAQDDS-------------WSSQKDVTRESSSKVD 605
+ KSN+WS WG +D Q+ S+ D+ W +K+VT+E + + D
Sbjct: 1660 D-QTKSNEWSGWGKKKDVTQEDNSRLGAWDANAADQTKSNEWSDWGKKKEVTQEDNVQ-D 1717
Query: 606 AWGAN------NEASNPKSNDWSA---------------WGKNKDGTQDGGSERAQDDSS 644
+WG+ + N S W A WGKNK GGSE Q+DS
Sbjct: 1718 SWGSGKRKDKVTQEDNSGSGGWGANRTDLAKSKSSEWSSWGKNKSEIPAGGSENVQNDSW 1777
Query: 645 SLGKWKAESQVE----------ADTV-------QEDSSKSKAWERNSDNVKVGNSSWGKP 687
GK + ++Q E A+T+ QED+ S W+ S KVGN+SWGKP
Sbjct: 1778 GSGKLEDDTQKENSGSAWVRNKAETIDGGSEKPQEDAWNSGNWKAES---KVGNASWGKP 1834
Query: 688 KFPETQAWDPQKETNQGAGSRGWDSQIASANSDSDRNFQWGKQGRESFKK-----SQGWG 742
K E+QAWD ++NQ + S+GW+S IASANS+S++ FQWGKQGR+SFKK SQG G
Sbjct: 1835 KSSESQAWDSHNQSNQNSSSQGWESHIASANSESEKGFQWGKQGRDSFKKNRFEGSQGRG 1894
Query: 743 SNAGDMKNKNRPGRAPGPRLDMYSSEEQDILKDIEPIVQSIRRIMQ 788
SNAGD KN+NRP RAPG RLD+YSS EQD+LKDIEPI+QSIRRIMQ
Sbjct: 1895 SNAGDWKNRNRPPRAPGQRLDIYSSGEQDVLKDIEPIMQSIRRIMQ 1940
>I1MIR6_SOYBN (tr|I1MIR6) DNA-directed RNA polymerase OS=Glycine max PE=3 SV=2
Length = 2098
Score = 686 bits (1769), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/787 (51%), Positives = 498/787 (63%), Gaps = 115/787 (14%)
Query: 1 MLEELKINMAEVFQRCQEKLRSLNRKRKYYQTLKSTELFFSESCASPNF----------- 49
MLEELKI+MA VF +C E+L+S ++K+K Q+LK+ EL FS +F
Sbjct: 953 MLEELKISMAYVFDKCHERLKSFSQKKKVNQSLKNIELSFSLFVGLYHFLIMFHLSSESC 1012
Query: 50 -----SSPCVTF--ISLDGDGLDKTTEILADVICPVLLGTIIQGDPRISSANITWINPDS 102
++PC+TF + D D LD ++LA+ ICPVL TIIQGDPRISSA+I W++PD+
Sbjct: 1013 SSSHPAAPCLTFWLKNYDSD-LDNAVKVLAEKICPVLFKTIIQGDPRISSASIIWVSPDT 1071
Query: 103 NAWVRNPSKSSNGELALDIILEEAAVKQSGDAWRIVLDSCLPVLNLIDTRRSIPYAIKQV 162
N WVRNP KSSNGELALDIILE+ AVKQSGDAWR+VLD+CLPVL+LIDTRRSIPYAIKQ+
Sbjct: 1072 NTWVRNPYKSSNGELALDIILEKEAVKQSGDAWRVVLDACLPVLHLIDTRRSIPYAIKQI 1131
Query: 163 QELLGISCTFDQAIQRLAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQ 222
QELLGISCTFDQAIQR+AASVKMVAKGVLREHLILLASSMTCGGNLVGFN GGYKAL+RQ
Sbjct: 1132 QELLGISCTFDQAIQRVAASVKMVAKGVLREHLILLASSMTCGGNLVGFNIGGYKALSRQ 1191
Query: 223 LNIQVPFTDATLFTPKKCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSRFDVLWDAKE 282
LNIQVPFTDATLFTPKKCFERAAEKCHTDSLSSIVASCSWGK VAVGTGS+FDV+WDA E
Sbjct: 1192 LNIQVPFTDATLFTPKKCFERAAEKCHTDSLSSIVASCSWGKHVAVGTGSKFDVVWDANE 1251
Query: 283 RKSNELEGMDVYNFLHMVKSLINGEEENDACXXXXXXXXXXXXNADYSLSPQHTSGVDAV 342
KSNE+EGMDVY+FLHMVKS NGEEE DAC D +SPQH SG +AV
Sbjct: 1252 IKSNEIEGMDVYSFLHMVKSFTNGEEETDACLGEDIDDLLEEEYMDLGMSPQHNSGFEAV 1311
Query: 343 FEETFEAMNGPESNGWGATTDRTETKSTQWSAW-ESNKAETKDGGSQRVHEDSWTSRDVM 401
FEE E +NG SNGW ++++ E+K+ +WS W SNKAE KDG S+ ++SW + V
Sbjct: 1312 FEENPEVLNGSTSNGWDVSSNQGESKTNEWSGWASSNKAEIKDGRSEIAPKNSW-GKTVN 1370
Query: 402 KDDSQMTNAWDGNV--EQTKTISNDWTAWGKNKSEI-----QDNVAEKAEG--ECGSSEM 452
++DS +N W + +QTKT SN+W+AWG NKSEI N E +G E
Sbjct: 1371 QEDSSKSNPWSTSTIADQTKTKSNEWSAWGSNKSEIPVGWASSNKTEIKDGRSETAQENS 1430
Query: 453 WKTAVIQEGSSKSNAWKSNI--------------------------EQRSDEDSWTSQKL 486
W V QE SSKSNAW ++ + EDSW S K
Sbjct: 1431 WGKTVNQEDSSKSNAWNTSTTVDHANTKSNEWSAWGSNQSEIPAGGSKAVQEDSWGSSKW 1490
Query: 487 KADVIQ-DSSKPSSWGA----KPKSNDSSNWGRNKDEIQDVVSRRAEDDS---------- 531
KADV Q D+S+ +W A + KS++ S WG+ KD Q+ SR D+
Sbjct: 1491 KADVAQEDNSRLGAWDANAADQTKSSEWSGWGKKKDVTQEDNSRLGAWDANAADQTKSRD 1550
Query: 532 ---WSSKKQLSSDATQEDSSKFSFWGGNKDTTKPKSNDWSSWGGNRDGIQDGGSKRAQDD 588
W KK D TQED+S+ W N + KS++WS WG +D Q+ S+ D
Sbjct: 1551 WSGWGKKK----DITQEDNSRLGAWDANA-ADQTKSSEWSGWGKKKDVTQEDNSRLGAWD 1605
Query: 589 S-------------WSSQKDVTRESSSKVDAWGANNEASNPKSNDWSAWGKNKDGTQDGG 635
+ W +K+VT+E +S++ AW AN A KSN+WS WGK K+ T
Sbjct: 1606 ANTADQTKSNEWSGWGKKKEVTQEDNSRLGAWDANT-ADQTKSNEWSGWGKKKEVT---- 1660
Query: 636 SERAQDDSSSLGKW--KAESQVEA----------DTVQEDSSKSKAWERNSDNVKVGN-- 681
Q+D+S G W AE Q ++ D QED+S+ AW+ N+ + N
Sbjct: 1661 ----QEDNSRFGAWDANAEDQTKSNEWSGWGKKKDVTQEDNSRLGAWDANAADQTKSNEW 1716
Query: 682 SSWGKPK 688
S WGK K
Sbjct: 1717 SDWGKKK 1723
Score = 266 bits (681), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 211/526 (40%), Positives = 286/526 (54%), Gaps = 102/526 (19%)
Query: 354 ESNGWGATT--DRTETKSTQWSAWESNKAETKDGGSQRVHEDSWTSR----DVMKDDSQM 407
+SN W +T D TKS +WSAW SN++E GGS+ V EDSW S DV ++D+
Sbjct: 1442 KSNAWNTSTTVDHANTKSNEWSAWGSNQSEIPAGGSKAVQEDSWGSSKWKADVAQEDNSR 1501
Query: 408 TNAWDGNV-EQTKTISNDWTAWGKNKSEIQD----------NVAEKAEGECGSSEMWKTA 456
AWD N +QTK S++W+ WGK K Q+ N A++ + S K
Sbjct: 1502 LGAWDANAADQTK--SSEWSGWGKKKDVTQEDNSRLGAWDANAADQTKSRDWSGWGKKKD 1559
Query: 457 VIQEGSSKSNAWKSNIEQRSDEDSWTSQKLKADVIQ-DSSKPSSWGA----KPKSNDSSN 511
+ QE +S+ AW +N ++ W+ K DV Q D+S+ +W A + KSN+ S
Sbjct: 1560 ITQEDNSRLGAWDANAADQTKSSEWSGWGKKKDVTQEDNSRLGAWDANTADQTKSNEWSG 1619
Query: 512 WGRNKDEIQDVVSRRAEDDS-------------WSSKKQLSSDATQEDSSKFSFWGGNKD 558
WG+ K+ Q+ SR D+ W KK++ TQED+S+F W N +
Sbjct: 1620 WGKKKEVTQEDNSRLGAWDANTADQTKSNEWSGWGKKKEV----TQEDNSRFGAWDANAE 1675
Query: 559 TTKPKSNDWSSWGGNRDGIQDGGSKRAQDDS-------------WSSQKDVTRESSSKVD 605
+ KSN+WS WG +D Q+ S+ D+ W +K+VT+E + + D
Sbjct: 1676 D-QTKSNEWSGWGKKKDVTQEDNSRLGAWDANAADQTKSNEWSDWGKKKEVTQEDNVQ-D 1733
Query: 606 AWGAN------NEASNPKSNDWSA---------------WGKNKDGTQDGGSERAQDDSS 644
+WG+ + N S W A WGKNK GGSE Q+DS
Sbjct: 1734 SWGSGKRKDKVTQEDNSGSGGWGANRTDLAKSKSSEWSSWGKNKSEIPAGGSENVQNDSW 1793
Query: 645 SLGKWKAESQVE----------ADTV-------QEDSSKSKAWERNSDNVKVGNSSWGKP 687
GK + ++Q E A+T+ QED+ S W+ S KVGN+SWGKP
Sbjct: 1794 GSGKLEDDTQKENSGSAWVRNKAETIDGGSEKPQEDAWNSGNWKAES---KVGNASWGKP 1850
Query: 688 KFPETQAWDPQKETNQGAGSRGWDSQIASANSDSDRNFQWGKQGRESFKK-----SQGWG 742
K E+QAWD ++NQ + S+GW+S IASANS+S++ FQWGKQGR+SFKK SQG G
Sbjct: 1851 KSSESQAWDSHNQSNQNSSSQGWESHIASANSESEKGFQWGKQGRDSFKKNRFEGSQGRG 1910
Query: 743 SNAGDMKNKNRPGRAPGPRLDMYSSEEQDILKDIEPIVQSIRRIMQ 788
SNAGD KN+NRP RAPG RLD+YSS EQD+LKDIEPI+QSIRRIMQ
Sbjct: 1911 SNAGDWKNRNRPPRAPGQRLDIYSSGEQDVLKDIEPIMQSIRRIMQ 1956
>K7MDF9_SOYBN (tr|K7MDF9) DNA-directed RNA polymerase OS=Glycine max PE=3 SV=1
Length = 2049
Score = 684 bits (1766), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/727 (54%), Positives = 483/727 (66%), Gaps = 77/727 (10%)
Query: 1 MLEELKINMAEVFQRCQEKLRSLNRKRKYYQTLKSTELFFSESCASPNFSSPCVTF--IS 58
MLEELKI+MA VF +C E+L+S ++K+K Q+LK+ EL FSESC+S + ++PC+TF +
Sbjct: 953 MLEELKISMAYVFDKCHERLKSFSQKKKVNQSLKNIELSFSESCSSSHPAAPCLTFWLKN 1012
Query: 59 LDGDGLDKTTEILADVICPVLLGTIIQGDPRISSANITWINPDSNAWVRNPSKSSNGELA 118
D D LD ++LA+ ICPVL TIIQGDPRISSA+I W++PD+N WVRNP KSSNGELA
Sbjct: 1013 YDSD-LDNAVKVLAEKICPVLFKTIIQGDPRISSASIIWVSPDTNTWVRNPYKSSNGELA 1071
Query: 119 LDIILEEAAVKQSGDAWRIVLDSCLPVLNLIDTRRSIPYAIKQVQELLGISCTFDQAIQR 178
LDIILE+ AVKQSGDAWR+VLD+CLPVL+LIDTRRSIPYAIKQ+QELLGISCTFDQAIQR
Sbjct: 1072 LDIILEKEAVKQSGDAWRVVLDACLPVLHLIDTRRSIPYAIKQIQELLGISCTFDQAIQR 1131
Query: 179 LAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDATLFTPK 238
+AASVKMVAKGVLREHLILLASSMTCGGNLVGFN GGYKAL+RQLNIQVPFTDATLFTPK
Sbjct: 1132 VAASVKMVAKGVLREHLILLASSMTCGGNLVGFNIGGYKALSRQLNIQVPFTDATLFTPK 1191
Query: 239 KCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSRFDVLWDAKERKSNELEGMDVYNFLH 298
KCFERAAEKCHTDSLSSIVASCSWGK VAVGTGS+FDV+WDA E KSNE+EGMDVY+FLH
Sbjct: 1192 KCFERAAEKCHTDSLSSIVASCSWGKHVAVGTGSKFDVVWDANEIKSNEIEGMDVYSFLH 1251
Query: 299 MVKSLINGEEENDACXXXXXXXXXXXXNADYSLSPQHTSGVDAVFEETFEAMNGPESNGW 358
MVKS NGEEE DAC D +SPQH SG +AVFEE E +NG SNGW
Sbjct: 1252 MVKSFTNGEEETDACLGEDIDDLLEEEYMDLGMSPQHNSGFEAVFEENPEVLNGSTSNGW 1311
Query: 359 GATTDRTETKSTQWSAW-ESNKAETKDGGSQRVHEDSWTSRDVMKDDSQMTNAWDGNV-- 415
++++ E+K+ +WS W SNKAE KDG S+ ++SW + V ++DS +N W +
Sbjct: 1312 DVSSNQGESKTNEWSGWASSNKAEIKDGRSEIAPKNSW-GKTVNQEDSSKSNPWSTSTIA 1370
Query: 416 EQTKTISNDWTAWGKNKSEI-----QDNVAEKAEG--ECGSSEMWKTAVIQEGSSKSNAW 468
+QTKT SN+W+AWG NKSEI N E +G E W V QE SSKSNAW
Sbjct: 1371 DQTKTKSNEWSAWGSNKSEIPVGWASSNKTEIKDGRSETAQENSWGKTVNQEDSSKSNAW 1430
Query: 469 KSNIEQRSDEDSWTSQKLKADVIQDSSKPSSWGAKPKSNDSSNWGRNKDEIQDVVSRRAE 528
N D A KSN+ S WG N+ EI S+ +
Sbjct: 1431 --NTSTTVDH-----------------------ANTKSNEWSAWGSNQSEIPAGGSKAVQ 1465
Query: 529 DDSWSSKKQLSSDATQEDSSKFSFWGGNKDTTKPKSNDWSSWGGNRDGIQDGGSKRAQDD 588
+DSW S K +D QED+S+ W N + KS++WS WG +D Q+ S+ D
Sbjct: 1466 EDSWGSSK-WKADVAQEDNSRLGAWDANA-ADQTKSSEWSGWGKKKDVTQEDNSRLGAWD 1523
Query: 589 S-------------WSSQKDVTRESSSKVDAWGANNEASNPKSNDWSAWGKNKDGTQDGG 635
+ W +KD+T+E +S++ AW A N A KS++WS WGK KD T
Sbjct: 1524 ANAADQTKSRDWSGWGKKKDITQEDNSRLGAWDA-NAADQTKSSEWSGWGKKKDVT---- 1578
Query: 636 SERAQDDSSSLGKWKAESQVEA------------DTVQEDSSKSKAWERNSDNVKVGN-- 681
Q+D+S LG W A + + + QED+S+ AW+ N+ + N
Sbjct: 1579 ----QEDNSRLGAWDANTADQTKSNEWSGWGKKKEVTQEDNSRLGAWDANTADQTKSNEW 1634
Query: 682 SSWGKPK 688
S WGK K
Sbjct: 1635 SGWGKKK 1641
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 212/496 (42%), Positives = 285/496 (57%), Gaps = 75/496 (15%)
Query: 354 ESNGWGATT--DRTETKSTQWSAWESNKAETKDGGSQRVHEDSWTSR----DVMKDDSQM 407
+SN W +T D TKS +WSAW SN++E GGS+ V EDSW S DV ++D+
Sbjct: 1426 KSNAWNTSTTVDHANTKSNEWSAWGSNQSEIPAGGSKAVQEDSWGSSKWKADVAQEDNSR 1485
Query: 408 TNAWDGNV-EQTKTISNDWTAWGKNKSEIQD----------NVAEKAEGECGSSEMWKTA 456
AWD N +QTK S++W+ WGK K Q+ N A++ + S K
Sbjct: 1486 LGAWDANAADQTK--SSEWSGWGKKKDVTQEDNSRLGAWDANAADQTKSRDWSGWGKKKD 1543
Query: 457 VIQEGSSKSNAWKSNIEQRSDEDSWTSQKLKADVIQ-DSSKPSSWGA----KPKSNDSSN 511
+ QE +S+ AW +N ++ W+ K DV Q D+S+ +W A + KSN+ S
Sbjct: 1544 ITQEDNSRLGAWDANAADQTKSSEWSGWGKKKDVTQEDNSRLGAWDANTADQTKSNEWSG 1603
Query: 512 WGRNKDEIQDVVSRRAEDDS-------------WSSKKQLSSDATQEDSSKFSFWGGNKD 558
WG+ K+ Q+ SR D+ W KK++ TQED+S+ W N
Sbjct: 1604 WGKKKEVTQEDNSRLGAWDANTADQTKSNEWSGWGKKKEV----TQEDNSRLGAWDANA- 1658
Query: 559 TTKPKSNDWSSWGGNRDGIQDGGSKRAQDDSWSSQK---DVTRESSSKVDAWGAN-NEAS 614
+ KSN+WS WG ++ Q+ + DSW S K VT+E +S WGAN + +
Sbjct: 1659 ADQTKSNEWSDWGKKKEVTQEDNVQ----DSWGSGKRKDKVTQEDNSGSGGWGANRTDLA 1714
Query: 615 NPKSNDWSAWGKNKDGTQDGGSERAQDDSSSLGKWKAESQVE----------ADTV---- 660
KS++WS+WGKNK GGSE Q+DS GK + ++Q E A+T+
Sbjct: 1715 KSKSSEWSSWGKNKSEIPAGGSENVQNDSWGSGKLEDDTQKENSGSAWVRNKAETIDGGS 1774
Query: 661 ---QEDSSKSKAWERNSDNVKVGNSSWGKPKFPETQAWDPQKETNQGAGSRGWDSQIASA 717
QED+ S W+ S KVGN+SWGKPK E+QAWD ++NQ + S+GW+S IASA
Sbjct: 1775 EKPQEDAWNSGNWKAES---KVGNASWGKPKSSESQAWDSHNQSNQNSSSQGWESHIASA 1831
Query: 718 NSDSDRNFQWGKQGRESFKK-----SQGWGSNAGDMKNKNRPGRAPGPRLDMYSSEEQDI 772
NS+S++ FQWGKQGR+SFKK SQG GSNAGD KN+NRP RAPG RLD+YSS EQD+
Sbjct: 1832 NSESEKGFQWGKQGRDSFKKNRFEGSQGRGSNAGDWKNRNRPPRAPGQRLDIYSSGEQDV 1891
Query: 773 LKDIEPIVQSIRRIMQ 788
LKDIEPI+QSIRRIMQ
Sbjct: 1892 LKDIEPIMQSIRRIMQ 1907
>K7MDF7_SOYBN (tr|K7MDF7) DNA-directed RNA polymerase OS=Glycine max PE=3 SV=1
Length = 2065
Score = 682 bits (1760), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/742 (52%), Positives = 478/742 (64%), Gaps = 91/742 (12%)
Query: 1 MLEELKINMAEVFQRCQEKLRSLNRKRKYYQTLKSTELFFSESCASPNF----------- 49
MLEELKI+MA VF +C E+L+S ++K+K Q+LK+ EL FS +F
Sbjct: 953 MLEELKISMAYVFDKCHERLKSFSQKKKVNQSLKNIELSFSLFVGLYHFLIMFHLSSESC 1012
Query: 50 -----SSPCVTFISLDGDG-LDKTTEILADVICPVLLGTIIQGDPRISSANITWINPDSN 103
++PC+TF + D LD ++LA+ ICPVL TIIQGDPRISSA+I W++PD+N
Sbjct: 1013 SSSHPAAPCLTFWLKNYDSDLDNAVKVLAEKICPVLFKTIIQGDPRISSASIIWVSPDTN 1072
Query: 104 AWVRNPSKSSNGELALDIILEEAAVKQSGDAWRIVLDSCLPVLNLIDTRRSIPYAIKQVQ 163
WVRNP KSSNGELALDIILE+ AVKQSGDAWR+VLD+CLPVL+LIDTRRSIPYAIKQ+Q
Sbjct: 1073 TWVRNPYKSSNGELALDIILEKEAVKQSGDAWRVVLDACLPVLHLIDTRRSIPYAIKQIQ 1132
Query: 164 ELLGISCTFDQAIQRLAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQL 223
ELLGISCTFDQAIQR+AASVKMVAKGVLREHLILLASSMTCGGNLVGFN GGYKAL+RQL
Sbjct: 1133 ELLGISCTFDQAIQRVAASVKMVAKGVLREHLILLASSMTCGGNLVGFNIGGYKALSRQL 1192
Query: 224 NIQVPFTDATLFTPKKCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSRFDVLWDAKER 283
NIQVPFTDATLFTPKKCFERAAEKCHTDSLSSIVASCSWGK VAVGTGS+FDV+WDA E
Sbjct: 1193 NIQVPFTDATLFTPKKCFERAAEKCHTDSLSSIVASCSWGKHVAVGTGSKFDVVWDANEI 1252
Query: 284 KSNELEGMDVYNFLHMVKSLINGEEENDACXXXXXXXXXXXXNADYSLSPQHTSGVDAVF 343
KSNE+EGMDVY+FLHMVKS NGEEE DAC D +SPQH SG +AVF
Sbjct: 1253 KSNEIEGMDVYSFLHMVKSFTNGEEETDACLGEDIDDLLEEEYMDLGMSPQHNSGFEAVF 1312
Query: 344 EETFEAMNGPESNGWGATTDRTETKSTQWSAW-ESNKAETKDGGSQRVHEDSWTSRDVMK 402
EE E +NG SNGW ++++ E+K+ +WS W SNKAE KDG S+ ++SW + V +
Sbjct: 1313 EENPEVLNGSTSNGWDVSSNQGESKTNEWSGWASSNKAEIKDGRSEIAPKNSW-GKTVNQ 1371
Query: 403 DDSQMTNAWDGNV--EQTKTISNDWTAWGKNKSEI-----QDNVAEKAEG--ECGSSEMW 453
+DS +N W + +QTKT SN+W+AWG NKSEI N E +G E W
Sbjct: 1372 EDSSKSNPWSTSTIADQTKTKSNEWSAWGSNKSEIPVGWASSNKTEIKDGRSETAQENSW 1431
Query: 454 KTAVIQEGSSKSNAWKSNIEQRSDEDSWTSQKLKADVIQDSSKPSSWGAKPKSNDSSNWG 513
V QE SSKSNAW N D A KSN+ S WG
Sbjct: 1432 GKTVNQEDSSKSNAW--NTSTTVDH-----------------------ANTKSNEWSAWG 1466
Query: 514 RNKDEIQDVVSRRAEDDSWSSKKQLSSDATQEDSSKFSFWGGNKDTTKPKSNDWSSWGGN 573
N+ EI S+ ++DSW S K +D QED+S+ W N + KS++WS WG
Sbjct: 1467 SNQSEIPAGGSKAVQEDSWGSSK-WKADVAQEDNSRLGAWDANA-ADQTKSSEWSGWGKK 1524
Query: 574 RDGIQDGGSKRAQDDS-------------WSSQKDVTRESSSKVDAWGANNEASNPKSND 620
+D Q+ S+ D+ W +KD+T+E +S++ AW A N A KS++
Sbjct: 1525 KDVTQEDNSRLGAWDANAADQTKSRDWSGWGKKKDITQEDNSRLGAWDA-NAADQTKSSE 1583
Query: 621 WSAWGKNKDGTQDGGSERAQDDSSSLGKWKAESQVEA------------DTVQEDSSKSK 668
WS WGK KD T Q+D+S LG W A + + + QED+S+
Sbjct: 1584 WSGWGKKKDVT--------QEDNSRLGAWDANTADQTKSNEWSGWGKKKEVTQEDNSRLG 1635
Query: 669 AWERNSDNVKVGN--SSWGKPK 688
AW+ N+ + N S WGK K
Sbjct: 1636 AWDANTADQTKSNEWSGWGKKK 1657
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 212/496 (42%), Positives = 285/496 (57%), Gaps = 75/496 (15%)
Query: 354 ESNGWGATT--DRTETKSTQWSAWESNKAETKDGGSQRVHEDSWTSR----DVMKDDSQM 407
+SN W +T D TKS +WSAW SN++E GGS+ V EDSW S DV ++D+
Sbjct: 1442 KSNAWNTSTTVDHANTKSNEWSAWGSNQSEIPAGGSKAVQEDSWGSSKWKADVAQEDNSR 1501
Query: 408 TNAWDGNV-EQTKTISNDWTAWGKNKSEIQD----------NVAEKAEGECGSSEMWKTA 456
AWD N +QTK S++W+ WGK K Q+ N A++ + S K
Sbjct: 1502 LGAWDANAADQTK--SSEWSGWGKKKDVTQEDNSRLGAWDANAADQTKSRDWSGWGKKKD 1559
Query: 457 VIQEGSSKSNAWKSNIEQRSDEDSWTSQKLKADVIQ-DSSKPSSWGA----KPKSNDSSN 511
+ QE +S+ AW +N ++ W+ K DV Q D+S+ +W A + KSN+ S
Sbjct: 1560 ITQEDNSRLGAWDANAADQTKSSEWSGWGKKKDVTQEDNSRLGAWDANTADQTKSNEWSG 1619
Query: 512 WGRNKDEIQDVVSRRAEDDS-------------WSSKKQLSSDATQEDSSKFSFWGGNKD 558
WG+ K+ Q+ SR D+ W KK++ TQED+S+ W N
Sbjct: 1620 WGKKKEVTQEDNSRLGAWDANTADQTKSNEWSGWGKKKEV----TQEDNSRLGAWDANA- 1674
Query: 559 TTKPKSNDWSSWGGNRDGIQDGGSKRAQDDSWSSQK---DVTRESSSKVDAWGAN-NEAS 614
+ KSN+WS WG ++ Q+ + DSW S K VT+E +S WGAN + +
Sbjct: 1675 ADQTKSNEWSDWGKKKEVTQEDNVQ----DSWGSGKRKDKVTQEDNSGSGGWGANRTDLA 1730
Query: 615 NPKSNDWSAWGKNKDGTQDGGSERAQDDSSSLGKWKAESQVE----------ADTV---- 660
KS++WS+WGKNK GGSE Q+DS GK + ++Q E A+T+
Sbjct: 1731 KSKSSEWSSWGKNKSEIPAGGSENVQNDSWGSGKLEDDTQKENSGSAWVRNKAETIDGGS 1790
Query: 661 ---QEDSSKSKAWERNSDNVKVGNSSWGKPKFPETQAWDPQKETNQGAGSRGWDSQIASA 717
QED+ S W+ S KVGN+SWGKPK E+QAWD ++NQ + S+GW+S IASA
Sbjct: 1791 EKPQEDAWNSGNWKAES---KVGNASWGKPKSSESQAWDSHNQSNQNSSSQGWESHIASA 1847
Query: 718 NSDSDRNFQWGKQGRESFKK-----SQGWGSNAGDMKNKNRPGRAPGPRLDMYSSEEQDI 772
NS+S++ FQWGKQGR+SFKK SQG GSNAGD KN+NRP RAPG RLD+YSS EQD+
Sbjct: 1848 NSESEKGFQWGKQGRDSFKKNRFEGSQGRGSNAGDWKNRNRPPRAPGQRLDIYSSGEQDV 1907
Query: 773 LKDIEPIVQSIRRIMQ 788
LKDIEPI+QSIRRIMQ
Sbjct: 1908 LKDIEPIMQSIRRIMQ 1923
>M5XM01_PRUPE (tr|M5XM01) Uncharacterized protein OS=Prunus persica
GN=PRUPE_ppa000088mg PE=4 SV=1
Length = 1855
Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust.
Identities = 333/857 (38%), Positives = 446/857 (52%), Gaps = 146/857 (17%)
Query: 1 MLEELKINMAEVFQRCQEKLRSLNRKR---KYYQT---LKSTELF------FSESCASPN 48
ML EL I + ++ Q+CQE + S RK+ K + K+T LF F SCA
Sbjct: 951 MLRELNIGVHDILQKCQETINSFRRKKVGKKKFNIGYHFKNTVLFASEHCSFHHSCAEKR 1010
Query: 49 FSSPCVTFI--SLDGDGLDKTTEILADVICPVLLGTIIQGDPRISSANITWINPDSNAWV 106
SPC+ F + D T + AD+ICPVLL TII+GDPRI SANI WI+PD+ W+
Sbjct: 1011 SDSPCLMFFLQATDDLETTTTLQYYADLICPVLLETIIKGDPRIGSANIIWIDPDTTTWI 1070
Query: 107 RNPSKSSNGELALDIILEEAAVKQSGDAWRIVLDSCLPVLNLIDTRRSIPYAIKQVQELL 166
R+P+KS GE ALDI+LE++ +KQSGDAWR VLDSCLPVL+LIDTRRSIPYAIKQ+QELL
Sbjct: 1071 RSPNKSQKGEWALDIVLEKSVIKQSGDAWRTVLDSCLPVLHLIDTRRSIPYAIKQIQELL 1130
Query: 167 GISCTFDQAIQRLAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQ 226
G+SC FDQA+QRL+ +V MVAKGVL+EHLILLA+SMTC GN VGFN+ GYKAL+R LNIQ
Sbjct: 1131 GVSCAFDQAVQRLSTAVTMVAKGVLKEHLILLANSMTCAGNFVGFNSSGYKALSRALNIQ 1190
Query: 227 VPFTDATLFTPKKCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSRFDVLWDAKERKSN 286
VPFT+ATLFTP+KCFERAAEKCH DSL+SIVASCSWGK VAVGTG RFDVLWD +E +
Sbjct: 1191 VPFTEATLFTPRKCFERAAEKCHMDSLASIVASCSWGKHVAVGTGVRFDVLWDTREVELT 1250
Query: 287 ELEGMDVYNFLHMVKSLINGEEENDACXXXXXXXXXXXXNADYSLSPQHTSGVD-AVFEE 345
+ G+DV+NFLHMV + E A AD S SP+ S D VFE+
Sbjct: 1251 QEGGLDVFNFLHMVSTANVEEATTGALGAEVDDLMLVDEMADSSFSPELNSSFDRPVFED 1310
Query: 346 TFE----AMNGPESNGWGATTDRTETKSTQWSAWESNKAETKDGGSQRVHEDSWTSRDVM 401
E + PE + W + T S W + K+ G+ V D W+S
Sbjct: 1311 LVEFDDKLGDLPEKSNWEKDSS-FHTDSNGGKDWSVD----KNVGTVAV-PDVWSSWGTE 1364
Query: 402 KDDSQMTNAWDGNVEQTK-TISNDWTAWGKNKSEIQDNVAEKAEGECGSSEMW-KTAVIQ 459
K +Q +N+ + ++ K ++ + +AWGKN + ++N S W V +
Sbjct: 1365 KGKTQDSNSAEAQLDSKKSSVLDTSSAWGKNPA--KENTTSTWGTTTASENDWCGRGVGE 1422
Query: 460 EGSSKSNAWKSNIEQRSDEDSWTSQKLKADVIQDSSKPSSWGAKP-KSNDSSNWGRNKDE 518
+ S+ + KS + S +W + + D S+WG P K N +S WG +
Sbjct: 1423 DDSATLSGKKSGVLNTS--SAWATNTAREDA------ASAWGTNPAKENSTSTWGTTRAN 1474
Query: 519 IQDVVSRRA-EDDSWSSKKQLSS----------DATQEDSSKFSFWGGN---------KD 558
D R +DDS S + SS + +ED++ S WG +
Sbjct: 1475 ENDWCGREVGQDDSASLSVKKSSVLDTSSAWATNTAREDAA--SAWGKHPAKENTTSTWG 1532
Query: 559 TTKPKSNDWSSWG-GNRDGIQDGGSKRAQDDSWSS-QKDVTRESSSKVDAWGANNEASN- 615
TT NDW G G+ D G K + ++ S + RE ++ AWG N N
Sbjct: 1533 TTTASENDWCGRGVGHDDSASLSGKKSSVLNTSSVWATNTAREDATS--AWGKNPAKENT 1590
Query: 616 --------PKSNDWSAWGKNKDGTQDGGSERAQDDSSSLGKWKAESQVEADTVQEDSSKS 667
NDW K D + QDDS+SL W + +
Sbjct: 1591 TSTWGTTTASENDWCGREAGKVEPVDLQPTKPQDDSASLSGWDSP-----------TGDG 1639
Query: 668 KAWERNSDNVKVGNSSWGKPKFPETQAWDPQKETNQGAGSRGWDSQIASANSDSDRNFQW 727
+ ERN WG+ + +T+
Sbjct: 1640 NSGERNHQ--------WGQHRGDQTK---------------------------------- 1657
Query: 728 GKQGRESFKKSQGWGSNAGDMKNKNRPGRAPG----------------PRLDMYSSEEQD 771
+ F+ ++ W S+ G+ KNKNRP ++PG RLDM++SEEQD
Sbjct: 1658 ----KNRFEGARNWVSSPGEWKNKNRPPKSPGMVNDNSTMGALYTVTRQRLDMFTSEEQD 1713
Query: 772 ILKDIEPIVQSIRRIMQ 788
+L +IEP+++S+RRIM
Sbjct: 1714 VLSNIEPVMRSLRRIMH 1730
>B9GWY0_POPTR (tr|B9GWY0) Predicted protein (Fragment) OS=Populus trichocarpa
GN=POPTRDRAFT_758152 PE=4 SV=1
Length = 1020
Score = 479 bits (1233), Expect = e-132, Method: Compositional matrix adjust.
Identities = 347/918 (37%), Positives = 473/918 (51%), Gaps = 169/918 (18%)
Query: 2 LEELKINMAEVFQRCQEKLRSLNRKRKYYQTLKSTELFFSESCASPNF--SSPCVTFI-- 57
L++L I + ++CQE + + +K+K K T L SESC+ SPC+ F
Sbjct: 27 LQDLNITAQVILEKCQETVNTFRKKKKVGNLFKKTILLVSESCSFQQCIDESPCLMFFWQ 86
Query: 58 SLDGDGLDKTTEILADVICPVLLGTIIQ----------------------------GDPR 89
D L++T+ ILAD+ICPVLL TII+ GD R
Sbjct: 87 GADDVHLERTSNILADMICPVLLETIIKVYIGLTISIRHSVQRGSKRTWCSSINACGDHR 146
Query: 90 ISSANITWINPDSNAWVRNPSKSSNGELALDIILEEAAVKQSGDAWRIVLDSCLPVLNLI 149
IS ANI W P++N W+RNPS++ GELALDI+LE++ VK+SGDAWRIVLDSCLPVL+LI
Sbjct: 147 ISCANIIWATPETNTWIRNPSRTQKGELALDIVLEKSVVKKSGDAWRIVLDSCLPVLHLI 206
Query: 150 DTRRSIPYAIKQVQELLGISCTFDQAIQRLAASVKMVAKGVLREHLILLASSMTCGGNLV 209
+T RSIPYAIKQVQELLG+SC FD A+QRL+ SV MVAKGVL+EHLILL +SMTC G+L+
Sbjct: 207 NTTRSIPYAIKQVQELLGVSCAFDTAVQRLSKSVTMVAKGVLKEHLILLGNSMTCAGSLI 266
Query: 210 GFNTGGYKALARQLNIQVPFTDATLFTPKKCFERAAEKCHTDSLSSIVASCSWGKPVAVG 269
GF TGGYK L+R L+IQVPFT+ATLFTP+KCFE+AAEKCHTDSLSSIVASC+WGK V VG
Sbjct: 267 GFYTGGYKTLSRSLDIQVPFTEATLFTPRKCFEKAAEKCHTDSLSSIVASCAWGKHVTVG 326
Query: 270 TGSRFDVLWDAKERKSNELEGMDVYNFLHMVKSLINGEEENDACXXXXXXXXXXXXNADY 329
TGS FDVLWD KE N MDVY+FL+MV+S GEE AC + D+
Sbjct: 327 TGSHFDVLWDTKEACLNPEGSMDVYSFLNMVRSTAGGEESVTAC-LGAEVDDLMLEDEDW 385
Query: 330 SLSPQHTSGVD-AVFEETFEAM----NGPESNGW---GATTDRTET-------------K 368
+LSP+H S D FE++ E N P + W + DR+ + K
Sbjct: 386 NLSPEHNSSSDKPTFEDSAEFQDFLGNQPAESNWEKISSLKDRSRSSGNWDVDKNDGAVK 445
Query: 369 STQWSAWESNKAETKDGGSQ-------RVHEDSWTSRDVMKDDSQMT----------NAW 411
WS N AE D S R +SW S + + + + N +
Sbjct: 446 EKPWSL-GMNTAEANDVASSGWDTAAARTTNNSWNSENNVAQSNSFSGWATKKPEPHNGF 504
Query: 412 DGNVEQTKTISNDW---TAWGKNKSEIQDNVAEKAEGECGSSEMWKTAVI---QEGSSKS 465
V++ T SNDW AWG+ +DN E +S+ W V + G +KS
Sbjct: 505 ATKVQEEPTTSNDWDAGAAWGRKD---RDN----KFAETNASKSWWGKVTDGDESGQNKS 557
Query: 466 ------------NAWKSNIEQRSDEDSWTSQKLKADVIQDSSKPSSWGAKPKSND----- 508
+ W + Q W S+ + + +++ W +K SN
Sbjct: 558 KNKRPEDQDVGTHGWDDKMSQDQSISGWASKTTQ----EATTESLGWDSKGNSNPGDAAC 613
Query: 509 ----SSNWGRNKDEIQDVVSRRAEDDSWSSKKQLSSDATQEDSSKFSFWGGNKDTTKPKS 564
+S WG + D W K++SS+ Q D++ S WG KPKS
Sbjct: 614 GWKAASTWGAENTD---------GDKLWG--KEVSSN--QADTA--SGWG------KPKS 652
Query: 565 NDWS-SWGGNRDGIQDGGSKRAQDDSWSSQKDVTRES----SSKVDAWGANNEASNPKSN 619
+ S WG ++ ++ K +S + WG N+ ++ +++
Sbjct: 653 PEISLGWGSTKESVKSDRGWGVSSSGGGRDKKTENQSLAGQGKESGGWG--NKVTSNQAD 710
Query: 620 DWSAWGKNKDGTQDGGSERAQDDSSSLGKWKAESQV-----EADTVQEDSS-----KSKA 669
S WGK K G +++ + +W + E + E+ S K
Sbjct: 711 TASGWGKPKSSENSQGWGLSKESGKEVHEWGVPNSAGGNGSETNNNNENQSLVEQGKESG 770
Query: 670 WERNSDNVKVGNSS-WGKPKFPE-TQAWDPQKETNQGAGSRGWDSQIASANSDSDRNFQW 727
W+ + + + G +S WGKPK P ++ W +E + GW + + S R+ QW
Sbjct: 771 WDNKASSNQEGTASGWGKPKSPALSEGWGSPREPVKAV--HGWGVPNSGGGNGSGRDQQW 828
Query: 728 GKQGRE----SFKKSQGWGSNAGDMKNK-NRPGR------APG------PRLDMYSSEEQ 770
G+Q RE F+ S+GWGSN GD KNK NRP + A G RLD+++S+EQ
Sbjct: 829 GQQSREFKKDRFEGSRGWGSNNGDWKNKRNRPSKPHEDLNASGIFTTTRQRLDVFTSQEQ 888
Query: 771 DILKDIEPIVQSIRRIMQ 788
DIL DIEP++ SIRRIM
Sbjct: 889 DILSDIEPLMLSIRRIMH 906
>K4B027_SOLLC (tr|K4B027) DNA-directed RNA polymerase OS=Solanum lycopersicum
GN=Solyc01g096390.2 PE=3 SV=1
Length = 1678
Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust.
Identities = 221/446 (49%), Positives = 293/446 (65%), Gaps = 25/446 (5%)
Query: 2 LEELKINMAEVFQRCQEKLRSLNRKRKYYQTLKSTELFFSESCA------SPNFSSPCVT 55
LE L I++ EV +RCQE + S +K+K K L SE C+ S ++PC+
Sbjct: 996 LENLGISVLEVHERCQENISSFQKKKKIGNLFKRIVLSVSEFCSFCHNSGSKCLNAPCLR 1055
Query: 56 FISLDG--DGLDKTTEILADVICPVLLGTIIQGDPRISSANITWINPDSNAWVRNPSKSS 113
F D D L++ + ILAD+ICP+LL T+I+GDPR+SSANI WI+PD+ +W+R+PSKS
Sbjct: 1056 FSWPDASDDHLERVSHILADMICPILLDTVIKGDPRVSSANIAWISPDTMSWIRSPSKSQ 1115
Query: 114 NGELALDIILEEAAVKQSGDAWRIVLDSCLPVLNLIDTRRSIPYAIKQVQELLGISCTFD 173
GELALDI+LE+ AVKQ GDAWRI++DSCLPV++LIDT RSIPYAIKQVQEL+GISC F+
Sbjct: 1116 RGELALDIVLEKEAVKQRGDAWRILMDSCLPVIHLIDTTRSIPYAIKQVQELIGISCAFE 1175
Query: 174 QAIQRLAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDAT 233
QA++RL+ SV MV KGVL++HL+LLA+SMTC GNLVGFN GG KAL+R LN+Q+PFT+AT
Sbjct: 1176 QAVKRLSTSVTMVTKGVLKDHLVLLANSMTCAGNLVGFNAGGIKALSRSLNVQIPFTEAT 1235
Query: 234 LFTPKKCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSRFDVLWDAKERKSNELEGMDV 293
LFTP+KCFERAAEKCH DSLSSIVASCSWGK VAVGTGSRF+VL + + + N + DV
Sbjct: 1236 LFTPRKCFERAAEKCHVDSLSSIVASCSWGKHVAVGTGSRFEVLLNTRNVEWNIPDTRDV 1295
Query: 294 YNFLHMVKSLINGEEENDACXXXXXXXXXXXXNADYSLSPQHTSGVDA-VFEETFEA--- 349
Y+FLH+V++ E E +C + LSP SG + FE+ E
Sbjct: 1296 YSFLHLVRNTSAQEVEGTSCLGAEIDELEEDEDMGLYLSPNRDSGSEMPTFEDRAEFDYN 1355
Query: 350 ----MNGPESNGWGATTDRTETKSTQWSAWESNKAETKDGGSQRVHE-DSWTSRDVMKDD 404
P + W + + W +T++G + V++ DSW++ D+
Sbjct: 1356 ENLDEGKPSGSAWEKASSGSVKSGGSWDM----AGKTQNGAEEGVNQSDSWSAWGKKVDE 1411
Query: 405 SQMTNAWDGNVEQTKTISNDWTAWGK 430
+ G+ EQ S W++WGK
Sbjct: 1412 PENNRQQSGSGEQ----SGSWSSWGK 1433
>Q5D868_SPIOL (tr|Q5D868) DNA-directed RNA polymerase (Fragment) OS=Spinacia
oleracea GN=NRPD1b PE=2 SV=1
Length = 1902
Score = 417 bits (1071), Expect = e-113, Method: Compositional matrix adjust.
Identities = 257/598 (42%), Positives = 342/598 (57%), Gaps = 73/598 (12%)
Query: 1 MLEELKINMAEVFQRCQEKLRSLNRKRKYYQTLKSTELFFSESCASPNFSS-----PCVT 55
+L+ I M ++ Q+C+E++ L +K+KY K L S+ C + S PC+
Sbjct: 748 LLKASGIGMHDILQKCEEQVNLLRKKKKYGYHFKRILLSVSDCCFFNHSDSKWTDMPCLK 807
Query: 56 FI--SLDGDGLDKTTEILADVICPVLLGTIIQGDPRISSANITWINPDSNAWVRNPSKSS 113
F + L++T I+AD+ICPVLL TII+GDPRIS+ NI WINP + WV++P S+
Sbjct: 808 FFWQDMTDTDLERTKHIMADMICPVLLDTIIKGDPRISTVNIIWINPGTTTWVQSPCSST 867
Query: 114 NGELALDIILEEAAVKQSGDAWRIVLDSCLPVLNLIDTRRSIPYAIKQVQELLGISCTFD 173
GELA+++ LE+ AV+ +GDAWRIVLD CLPV +LIDTRRSIPYAIKQ+Q+L GISC FD
Sbjct: 868 KGELAVEVALEKEAVRLTGDAWRIVLDCCLPVFHLIDTRRSIPYAIKQIQDLFGISCAFD 927
Query: 174 QAIQRLAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDAT 233
QA+QRL+ SV MV KGVL+EHL+LLASSMTC GNLVGFNT G KAL R LN+QVPFT+AT
Sbjct: 928 QAVQRLSTSVTMVTKGVLKEHLLLLASSMTCAGNLVGFNTSGIKALCRALNVQVPFTEAT 987
Query: 234 LFTPKKCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSRFDVLWDAKERKSNELEGMDV 293
L+TP+KCFERA+EKCH D+L+SIV SCSWGK V++GTG++FD+LW+ KE + + + DV
Sbjct: 988 LYTPRKCFERASEKCHVDTLASIVGSCSWGKRVSIGTGAKFDLLWETKEIEMAD-KPTDV 1046
Query: 294 YNFLHMVKSLINGEEENDACXXXXXXXXXXXXNADYSLSPQHTSGVDAVFEETFEAMNGP 353
YNFLH+V S N EE + + +LSP+ + AVFEET E G
Sbjct: 1047 YNFLHLVSS-ANEEEVDSGGLGEDIESFEKDVYMEPALSPEQEN--KAVFEETLEI--GV 1101
Query: 354 ESNGWGATTDRTETKSTQWSAWESNKAETKDGGSQRVHEDSWTSRDVMKD-----DSQMT 408
+S+ GA + + + W +NK +T G + E W+S KD DS T
Sbjct: 1102 DSDITGADESSWDAFPSSGTGWNANKIDTGSGSA----EGGWSSWGSKKDQANPEDSSKT 1157
Query: 409 NAWDGNVEQTKTISND------WTA---------------WGKNKSEIQDNVAEKAEGEC 447
W + K D W A WG+ D E G
Sbjct: 1158 GGWSSGGSKQKPQPEDSSKSGGWDASKSWGGSNQGDPSPVWGQPVKATNDISIENDHGS- 1216
Query: 448 GSSE--------MWKTAVIQEGSSKSNAWKSNIEQRSDEDSWTSQKLKADVIQDSSKPSS 499
GS+E M K QE SS + W ++ SW+ K K D S S+
Sbjct: 1217 GSAEGGGWANSGMKKDLSKQENSSTAGGWDAS-------KSWSGSKPK-----DPS--SA 1262
Query: 500 WGAKPKSNDSSNWGRNKDEIQDVVSRRAED---DSWSSKKQLSSDATQEDSSKFSFWG 554
WGA K++D++ W + D +D+ S ED W KK L EDS+ + WG
Sbjct: 1263 WGAGKKTDDNNGW-KKSDSKKDLASGSVEDGGCSGWGPKKDL---LQPEDSAGENGWG 1316
>R0FV63_9BRAS (tr|R0FV63) Uncharacterized protein OS=Capsella rubella
GN=CARUB_v10022497mg PE=4 SV=1
Length = 1959
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 305/863 (35%), Positives = 448/863 (51%), Gaps = 134/863 (15%)
Query: 1 MLEELKINMAEVFQRCQEKLRSLNRKRKYYQT--LKSTELF------FSESCASPNFSSP 52
+L++ I+M ++ Q+C++ + SL +K+K T K T L F + C S + P
Sbjct: 945 LLQDWNISMQDIHQKCEDVINSLGQKKKKKATDDFKRTSLSVSDCCSFRDPCGSKDSDMP 1004
Query: 53 CVTF-ISLDGDGLDKTTEILADVICPVLLGTIIQGDPRISSANITWINPDSNAWVRNPSK 111
C+ F + L++T ++L + I PVLL T+I+GDPRI SANI W + D W+RN
Sbjct: 1005 CLMFSYNATNPDLERTLDVLCNTIYPVLLETVIKGDPRICSANIIWNSSDMTTWIRNRHA 1064
Query: 112 SSNGELALDIILEEAAVKQSGDAWRIVLDSCLPVLNLIDTRRSIPYAIKQVQELLGISCT 171
S GE LD+ +E++AVKQSGDAWR+V+DSCL VL+LIDT+RSIPY+IKQVQELLG+SC
Sbjct: 1065 SRRGEWVLDVTVEKSAVKQSGDAWRVVIDSCLSVLHLIDTKRSIPYSIKQVQELLGLSCA 1124
Query: 172 FDQAIQRLAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTD 231
F+QA+QRL+ASVKMV+KGVL+EH+ILLA++MTC GN++GFN+GGYKAL R LNI+ PFT+
Sbjct: 1125 FEQAVQRLSASVKMVSKGVLKEHIILLANNMTCSGNMLGFNSGGYKALTRSLNIKAPFTE 1184
Query: 232 ATLFTPKKCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSRFDVLWDAKERKSNELEGM 291
ATL TP+KCFE+AAEKCHTDSLS++V SCSWGK V VGTGS+F++LW+ KE ++ E
Sbjct: 1185 ATLITPRKCFEKAAEKCHTDSLSTVVGSCSWGKRVDVGTGSQFELLWNQKETGLDDKEET 1244
Query: 292 DVYNFLHMVKSLINGEEENDACXXXXXXXXXXXXNADYSLSPQHTSGV-DAVFEETFEAM 350
DVY+FL MV+S + +DA A+++ SP+ S + + FE++ E
Sbjct: 1245 DVYSFLQMVRSTTS----SDAFVSSPGFDVTEEEMAEWAESPERDSALGEPKFEDSAEFQ 1300
Query: 351 N----GPES-----------NGWGATTDRTETKSTQWSAWESNKAETKDGGSQRVHEDSW 395
N G +S NG ++ +KST ESN + + ED+W
Sbjct: 1301 NLHDDGKQSESNWEKSSSWDNGCSGGSEWGVSKST---GGESNTESNWEKTTSVEKEDAW 1357
Query: 396 TSRDVMKDDSQMTNAWDGNVEQTKTISNDWTA---WGKNKSEIQDNVAEKAEGECGSSEM 452
+ + KD + + + G KT +D W +++ V E E +S++
Sbjct: 1358 SGWNTKKDAQESSKSDSGGAWGIKTKDDDANTTPNWETRPAQMDSIVPEINE---PTSDV 1414
Query: 453 WKTAVIQE---------GSSKSNAWKSNIEQRSDEDSWTSQKLKADVIQDSSKPSSWGAK 503
W + E S AW S +D D+W S K + S ++WG++
Sbjct: 1415 WGLKSVSEKPWNKKNWGTESAPAAWGS-----TDADAWGSSNKKNS--ETESDAAAWGSR 1467
Query: 504 PKSNDSSNWGRNKDEIQDVVSRRAEDD--SWSSKKQLSSDAT---------QEDSSKFSF 552
K N G + S E D +W S + SDA E S+ +
Sbjct: 1468 DKRNSDIGSGAGVLGPWNKKSSETESDAAAWGSSGKTKSDAATWSPWDKNNMEPDSEPAG 1527
Query: 553 WG--GNKDTTKPKSNDWSSWGGNRDGIQDGGSKRAQDDSWSSQKDVTRESSSKVDAWGAN 610
WG GN + ++ +SWG + G ++ +W S E++S+ AWG+
Sbjct: 1528 WGSQGNMKSETETESNGASWGSS-------GKTKSGAAAWGSCDKNNMETNSEPSAWGSQ 1580
Query: 611 NEA-----SNPKSNDWSAWGKNKDGTQDGGSERAQDDSSSLGKWKAESQVEADTVQEDSS 665
+ S P S W AW K T+ G L W ++ ++T S
Sbjct: 1581 GKKKAETESGPAS--WGAWDKKISETESG-----------LAGWGNGDKINSET----ES 1623
Query: 666 KSKAWERNSDNVKVGNSSWGKPKFPETQAWDPQKETNQGAGSRGWDS--QIASANSDSDR 723
+ AW SWG+P T A K+TN+ G+ W S + S D
Sbjct: 1624 GAAAW-----------GSWGQPS--PTAA---DKDTNEDDGN-PWVSLKETKSGEKDEKE 1666
Query: 724 NFQWGKQGRESFKKSQGWG--SNAGDMKNKNRPGRAPGP----------------RLDMY 765
QWG ++ F +G SN G + + + P P RLD +
Sbjct: 1667 KSQWGNPAKK-FPSDGSYGGWSNGGGAEWRGKRNHTPRPPRSEDNLAPMFTATKQRLDSF 1725
Query: 766 SSEEQDILKDIEPIVQSIRRIMQ 788
+SEEQ++L D+EP+++++R+IM
Sbjct: 1726 TSEEQELLSDVEPVMRTLRKIMH 1748
>M5XPM8_PRUPE (tr|M5XPM8) Uncharacterized protein OS=Prunus persica
GN=PRUPE_ppa024567mg PE=4 SV=1
Length = 792
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 302/802 (37%), Positives = 391/802 (48%), Gaps = 184/802 (22%)
Query: 40 FSESCASPNFSSPCVTFI--SLDGDGLDKTTEILADVICPVLLGTIIQGDPRISSANITW 97
F SCA SPC+ F + D T + AD+ICPVLL TII+GDPRI SANI W
Sbjct: 27 FYHSCAEKRSDSPCLMFFLQATDDLETTTTLQYYADLICPVLLETIIKGDPRIGSANIIW 86
Query: 98 INPDSNAWVRNPSKSSNGELALDIILEEAAVKQSGDAWRIVLDSCLPVLNLIDTRRSIPY 157
I+PD+ W+R+P+KS +KQSGDAWR VLDSCLPVL+LIDTRRSIPY
Sbjct: 87 IDPDTTTWIRSPNKS------------HKVIKQSGDAWRTVLDSCLPVLHLIDTRRSIPY 134
Query: 158 AIKQVQELLGISCTFDQAIQRLAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYK 217
AIKQ+QELLG+SC FDQA+QRL+ +V M+AKGVL+EHLILLA+SMTC GN VGFN+ GYK
Sbjct: 135 AIKQIQELLGVSCAFDQAVQRLSTAVTMMAKGVLKEHLILLANSMTCAGNFVGFNSNGYK 194
Query: 218 ALARQLNIQVPFTDATLFTPKKCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSRFDVL 277
AL+R LNIQVPFT+ATLFTP+KCFERAAEKCH DSL+SIVASCSWGK VAVGTG+RFDVL
Sbjct: 195 ALSRALNIQVPFTEATLFTPRKCFERAAEKCHMDSLASIVASCSWGKHVAVGTGARFDVL 254
Query: 278 WDAKERKSNELEGMDVYNFLHMVKSLINGEEENDACXXXXXXXXXXXXNADYSLSPQHTS 337
WD +E + + G+DV+NFLHMV + E A AD S SP+ S
Sbjct: 255 WDTREVELTQEGGLDVFNFLHMVSTANVEEATTGALGAEVDDLMLVDEMADSSFSPELNS 314
Query: 338 GVD-AVFEETFEAMNGPESNGWGATTDRTETKSTQWSAWESNKAETKDGGSQRVHEDSWT 396
D VFE+ E D + S WE + + H DS
Sbjct: 315 SFDRPVFEDLVEF-------------DDKLGDLPEKSNWEKDSS---------FHTDSNG 352
Query: 397 SRDVMKDDSQMTNAW--DGNVEQTKTISNDWTAWGKNKSE---IQDNVAE--------KA 443
+D W D NV T + + W++WG +K E V E K
Sbjct: 353 GKD-----------WSVDKNV-GTVAVPDVWSSWGTDKGENDWCGRGVGEDDFVSLSGKK 400
Query: 444 EGECGSSEMWKTAVIQEGSSKSNAWKSNIEQR----------SDEDSWTSQKLKADVIQD 493
G +S W T +E + ++AW +N + + E+ W + V QD
Sbjct: 401 SGVLNTSSAWATNTAREDA--ASAWGTNPAKENTTSTWGTTTASENDWCGRW----VGQD 454
Query: 494 SSKPSSWGAKPKSNDSSNWGRNKDEIQDVVSRRAEDDSWSSKKQLSSDATQEDSSKFSFW 553
S S + SS W N + R + S K+ +AT S W
Sbjct: 455 DSASLSVKKSSVLDTSSAWATN--------TAREDAASACGKQPAKENAT-------STW 499
Query: 554 GGNKDTTKPKSNDWSSWG-GNRDGIQDGGSKRAQDDSWSS-QKDVTRESSSKVDAWGANN 611
G TT NDW G G+ D G K + ++ S + RE ++ AWG N
Sbjct: 500 G----TTLASENDWCGRGVGHDDSASLSGKKSSVLNTSSVWATNTAREDATS--AWGENP 553
Query: 612 EASN---------PKSNDWSAWGKNKDGTQDGGSERAQDDSSSLGKWKAESQVEADTVQE 662
N NDW K D + QDDS+SL W +
Sbjct: 554 AKENTTSTWGTTTASENDWCGREAGKVEPVDFQPTKPQDDSASLSGWDSP---------- 603
Query: 663 DSSKSKAWERNSDNVKVGNSSWGKPKFPETQAWDPQKETNQGAGSRGWDSQIASANSDSD 722
+ + ER N WG+ + +T+ ++ G+R W
Sbjct: 604 -TGDGNSGER--------NHQWGQHRGDQTKK-------SRFEGARNW------------ 635
Query: 723 RNFQWGKQGRESFKKSQGWGSNAGDMKNKNRPGRAPG----------------PRLDMYS 766
S+ G+ KNKNRP ++PG PRLDM++
Sbjct: 636 -------------------VSSPGEWKNKNRPPKSPGMVNDNSTMGALYTVTRPRLDMFT 676
Query: 767 SEEQDILKDIEPIVQSIRRIMQ 788
SEE +L +IEP+++S+RRIM
Sbjct: 677 SEEH-VLSNIEPVMRSLRRIMH 697
>Q1L5X7_SOLLC (tr|Q1L5X7) DNA-directed RNA polymerase (Fragment) OS=Solanum
lycopersicum GN=RPE1 PE=2 SV=1
Length = 1127
Score = 406 bits (1044), Expect = e-110, Method: Compositional matrix adjust.
Identities = 218/446 (48%), Positives = 287/446 (64%), Gaps = 25/446 (5%)
Query: 2 LEELKINMAEVFQRCQEKLRSLNRKRKYYQTLKSTELFFSESCA------SPNFSSPCVT 55
LE L I++ EV +RCQE + S K+K K L SE C+ S ++PC+
Sbjct: 501 LENLGISVLEVHERCQENISSFRXKKKIGNLFKRIVLSVSEFCSFCHNSGSKCLNAPCLR 560
Query: 56 FISLDG--DGLDKTTEILADVICPVLLGTIIQGDPRISSANITWINPDSNAWVRNPSKSS 113
F D D L++ + ILAD+I P+LL T+I+GDPR+SSANI WI+PD+ +W+R+PSKS
Sbjct: 561 FSWPDASDDHLERVSHILADMIXPILLDTVIKGDPRVSSANIAWISPDTMSWIRSPSKSQ 620
Query: 114 NGELALDIILEEAAVKQSGDAWRIVLDSCLPVLNLIDTRRSIPYAIKQVQELLGISCTFD 173
GELALDI+LE+ AVK GDAWR ++DSCLPV++LIDT RSIPYAIKQVQEL+GISC F+
Sbjct: 621 RGELALDIVLEKEAVKXRGDAWRXLMDSCLPVIHLIDTTRSIPYAIKQVQELIGISCAFE 680
Query: 174 QAIQRLAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDAT 233
QA+ RL+ SV MV KGVL++HL+LLA+SMTC GNLVGFN GG KAL+R LN+Q+PFT+AT
Sbjct: 681 QAVXRLSTSVTMVTKGVLKDHLVLLANSMTCAGNLVGFNAGGIKALSRSLNVQIPFTEAT 740
Query: 234 LFTPKKCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSRFDVLWDAKERKSNELEGMDV 293
LFTP+KCFERAAEKCH DSLSSIVASCSWGK VAVGTGSRF+VL + + + N + DV
Sbjct: 741 LFTPRKCFERAAEKCHVDSLSSIVASCSWGKHVAVGTGSRFEVLLNTRNVEWNIPDTRDV 800
Query: 294 YNFLHMVKSLINGEEENDACXXXXXXXXXXXXNADYSLSPQHTSGVDA-VFEETFEA--- 349
Y+FLH+V++ E E +C + LSP SG + FE+ E
Sbjct: 801 YSFLHLVRNTSAQEVEGTSCLGAEIDELEEDEDMGLYLSPNRDSGSEMPTFEDRAEFDYN 860
Query: 350 ----MNGPESNGWGATTDRTETKSTQWSAWESNKAETKDGGSQRVHE-DSWTSRDVMKDD 404
P + W + + W +T++G + V++ DSW+S D+
Sbjct: 861 ENLDEGKPSGSAWEEASSGSVKSGGSWDM----AGKTQNGAEEGVNQSDSWSSWGKKVDE 916
Query: 405 SQMTNAWDGNVEQTKTISNDWTAWGK 430
+ G+ EQ S W+ WG+
Sbjct: 917 PENNRQQSGSGEQ----SGSWSPWGR 938
>D7LEE8_ARALL (tr|D7LEE8) DNA-directed RNA polymerase OS=Arabidopsis lyrata subsp.
lyrata GN=ARALYDRAFT_483042 PE=3 SV=1
Length = 1947
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 298/858 (34%), Positives = 461/858 (53%), Gaps = 117/858 (13%)
Query: 1 MLEELKINMAEVFQRCQEKLRSLNRKRKYYQT--LKSTELFFSESCASPNFSSPC----- 53
+L++ I+M ++ Q+C++ + SL +K+K T K T L SE C+ F PC
Sbjct: 945 LLQDWNISMQDILQKCEDVINSLGQKKKKKATDDFKRTSLSVSECCS---FQDPCGRKDS 1001
Query: 54 ------VTFISLDGDGLDKTTEILADVICPVLLGTIIQGDPRISSANITWINPDSNAWVR 107
++ + D D L++T ++L + I PVLL T+I+GDPRI SANI W + D W+R
Sbjct: 1002 DMPCLMFSYSATDPD-LERTLDVLCNTIYPVLLETVIKGDPRICSANIIWNSSDMTTWIR 1060
Query: 108 NPSKSSNGELALDIILEEAAVKQSGDAWRIVLDSCLPVLNLIDTRRSIPYAIKQVQELLG 167
N S GE LD+ +E++AVKQSGDAWR+V+D+CL VL+LIDT+RSIPY+IKQVQELLG
Sbjct: 1061 NCHASRRGEWVLDVTVEKSAVKQSGDAWRVVIDACLSVLHLIDTKRSIPYSIKQVQELLG 1120
Query: 168 ISCTFDQAIQRLAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQV 227
+SC F+QA+QRL+ASV+MV+KGVL+EH+ILLA++MTC GN++GFN+GGYKAL R LNI+
Sbjct: 1121 LSCAFEQAVQRLSASVRMVSKGVLKEHIILLANNMTCSGNMLGFNSGGYKALTRSLNIKA 1180
Query: 228 PFTDATLFTPKKCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSRFDVLWDAKERKSNE 287
PFT+ATL TP++CFE+AAEKCHTDSLS++V SCSWGK V VGTGS+F++LW+ KE ++
Sbjct: 1181 PFTEATLITPRRCFEKAAEKCHTDSLSTVVGSCSWGKRVDVGTGSQFELLWNQKETGLDD 1240
Query: 288 LEGMDVYNFLHMVKSLINGEEENDACXXXXXXXXXXXXNADYSLSPQHTSGV-DAVFEET 346
E DVY+FL MV+S N DA A+++ SP+ S + + FE++
Sbjct: 1241 KEETDVYSFLQMVRSTTNA----DAYVSSPGFDVTEEEMAEWAESPERDSALGEPKFEDS 1296
Query: 347 FEAMNGPESNGWGATTDRTETKSTQWSAWESNKAE---TKDGGSQRVHEDSW-TSRDVMK 402
E N + G ++ KS+ W S +E +K+ G + E +W + +V K
Sbjct: 1297 AEFQNLHDE---GKPSESNWEKSSSWDNGCSGGSEWGVSKNTGGEANPESNWEKTTNVEK 1353
Query: 403 DDSQMTNAWDGNVE-QTKTISNDWTAWG-KNKSEIQDNVAEKAEGECGSSEMWKTAVIQE 460
+D+ ++W+ + Q + S+ AWG K K + D ++ W+T Q
Sbjct: 1354 EDAW--SSWNTKKDAQESSKSDSGVAWGLKTKDDDAD-----------TTPNWETRPAQT 1400
Query: 461 GS--SKSNAWKSNI--EQRSDEDSWTSQKLKADVIQDSSKPSSWGAKPKSNDSSNWGRNK 516
S ++N S++ + + SW + + S P++WG S D++ WG +
Sbjct: 1401 DSIVPENNEPTSDVWGHKSGSDKSWDKKNGGTE-----SAPAAWG----STDAAVWGSSD 1451
Query: 517 DEIQDVVSRRAEDDSWSSKKQLSSDATQEDSSKFSFWGGNKDTTKPKSNDWSSWGGNRDG 576
+ + S A +W S+ + +S+ + W NK ++K +S D ++WG + D
Sbjct: 1452 KKNSETESDAA---AWGSRDKKNSEVGS-GAGVLGPW--NKKSSKTES-DGATWGSS-DK 1503
Query: 577 IQDGGSKRAQDDSWSSQKDVTRESSSKVDAWGA---NNEASNPKSNDWSAWGKNKDGTQD 633
+ G + +WSS E+ S+ AWG+ N + + W AW K T+
Sbjct: 1504 TKSGAA------AWSSWDKKNMETDSEPAAWGSQSKNKPETESGPSTWGAWDTKKSETES 1557
Query: 634 GGS---------ERAQDDSSSLGKW-KAESQVEADTVQEDSSKSKAW---ERNSDNVKVG 680
G + + +++G W K +S E+ S+ + W ++N+ +
Sbjct: 1558 GPAGWGIVDKKNSETESGPAAMGNWDKKKSNTESGPAAWGSTDAAVWGFSDKNNSETESD 1617
Query: 681 NSSWGK--PKFPETQ----AWDPQKETNQGAGSR--------GWDS--QIASANSDSDRN 724
++WG K ET+ AW + A + W S + S + D
Sbjct: 1618 AAAWGSRDKKTSETESGAAAWGSWGQPTPTAANEDANEDDENPWVSLKETKSRDKDDKER 1677
Query: 725 FQWGKQGRESFKKSQGWGSNAGDMKNKN----RPGR----------APGPRLDMYSSEEQ 770
QWG ++ D K K RP R A RLD ++SEEQ
Sbjct: 1678 IQWGNPAKKFPSSGGWSNGGGADWKGKRNHTPRPPRSEDNLAPMFTATRQRLDSFTSEEQ 1737
Query: 771 DILKDIEPIVQSIRRIMQ 788
++L D+EP+++++R+IM
Sbjct: 1738 ELLSDVEPVMRTLRKIMH 1755
>M4C7I4_BRARP (tr|M4C7I4) DNA-directed RNA polymerase OS=Brassica rapa subsp.
pekinensis GN=Bra000162 PE=3 SV=1
Length = 2059
Score = 364 bits (934), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 263/780 (33%), Positives = 417/780 (53%), Gaps = 84/780 (10%)
Query: 1 MLEELKINMAEVFQRCQEKLRSL-NRKRKYYQTLKSTELFFSESCA------SPNFSSPC 53
+LE I+M ++ QRC++ + SL +K+K + K L SE C+ S + PC
Sbjct: 945 LLEGWNISMQDILQRCEDAINSLVQKKKKKAEDFKKMNLSVSECCSFRGPGSSKDSDMPC 1004
Query: 54 VTFISLDGDG--LDKTTEILADVICPVLLGTIIQGDPRISSANITWINPDSNAWVRNPSK 111
+ F S + L++T ++L + I PVLL T+I+GDPRI+SANI W +P++ W+R+
Sbjct: 1005 LMFSSYNATDPDLERTLDVLCNTIYPVLLETVIKGDPRIASANIIWNSPETTTWIRSRHA 1064
Query: 112 SSNGELALDIILEEAAVKQSGDAWRIVLDSCLPVLNLIDTRRSIPYAIKQVQELLGISCT 171
S GE LD+ +E++ VKQSGDAWR+V+DSCL VL+LIDT+RSIPY+IKQVQELLG+SC
Sbjct: 1065 SRRGEWVLDVTVEKSDVKQSGDAWRVVIDSCLSVLHLIDTKRSIPYSIKQVQELLGLSCA 1124
Query: 172 FDQAIQRLAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTD 231
F+QA+QRL+ASV+ V+KGVL+EH+IL+A++MTC G+++GFN+GGYKAL R LNI+ PFT+
Sbjct: 1125 FEQAVQRLSASVRKVSKGVLKEHIILVANNMTCSGDMLGFNSGGYKALTRSLNIKAPFTE 1184
Query: 232 ATLFTPKKCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSRFDVLWDAKERKSNELEGM 291
ATL P+KCFE+AAEKCH DSLS++V SCSWGK V VGTGS+F++LW+ KE +
Sbjct: 1185 ATLIAPRKCFEKAAEKCHKDSLSTVVGSCSWGKRVDVGTGSQFELLWNKKETGLENDDET 1244
Query: 292 DVYNFLHMVKSLINGEEENDACXXXXXXXXXXXXNADYSLSPQHTSGV-DAVFEETFEAM 350
DV++FL MV+S + DA A+++ SP+ S + + F+++ E
Sbjct: 1245 DVFSFLQMVRST----KTADAYVSSPGFDVTEEEMAEWAESPERDSALGEPKFDDSAEFQ 1300
Query: 351 NGPESNGWGATTDRTETKSTQW---SAWESNKAE------TKDGGSQRVHEDSW-TSRDV 400
N D + ++W S WE+ + +K+ G + + W + ++
Sbjct: 1301 N---------LLDEGKASESKWDNGSLWENGCSSGSEWGVSKNAGGEENTQSGWGKAANI 1351
Query: 401 MKDDSQMTNAWDGNVE-QTKTISNDWTAWGKNKSEIQDNVAEKAEGECGSSEMWK-TAVI 458
K+D+ ++ W+ + Q T ++ W AWG S+ +D+ AE A G+ + VI
Sbjct: 1352 EKEDA--SSGWNSKKDAQEATNTDSWGAWG---SKTKDD-AENATPNWGTKPAQNDSVVI 1405
Query: 459 QEGSSKSNAWKSNIEQRSDEDSWTSQKLKADVIQDSSKPSSWGAKPKSNDS--SNWGRNK 516
+ G S+ W + + W + + + P++WG ++S + WG
Sbjct: 1406 ENGEPSSDVWGP---KAVSDKPWGKKNSETE-----PAPAAWGKTNSESESAAAAWGSTN 1457
Query: 517 DEIQDVVSRRAEDDSWSSKKQLSSDATQEDSSKFSFWGGNKDTTKPKSNDWSSWGGNRDG 576
+ S A W S + + + T+ D+ + NK+ T+P W SWG
Sbjct: 1458 KKNTGTESDAA---GWGSTNKKNPE-TESDAGAWGSGAKNKE-TEPAPAAWGSWGKKSSE 1512
Query: 577 IQDGGSKRAQDDSWSSQKDVTRESSSKVDAWGANNEASNPKSN--DWSAWGKNKDGTQDG 634
GG+ W ++ E+ S W + N + +S W + K+K T+ G
Sbjct: 1513 AVSGGA------DWGNRGKRVSETESGAGGWASRNPSLETQSGGATWGSRDKSKFETESG 1566
Query: 635 GSERAQDDSSSLGKWKAESQVEADTVQEDSSKSKAWERNSDNVKVGNSSWGKPKFPETQA 694
G+ W SQ + + E S + AW + + G ++WG +QA
Sbjct: 1567 GA-----------AWG--SQAKNNFESESGSGAAAWGKKKPETESGGAAWG------SQA 1607
Query: 695 WDPQKETNQGAGSRGWDSQIASANSDSDRNFQWGKQGRESFKKSQGWGSNAGDMKNKNRP 754
+ + E G+G+ W + + WG Q +++ + G G++ +K +P
Sbjct: 1608 KN-KSEIESGSGAAAWGTWDKKKSETESGGGAWGSQAKKNSETESGAGASTWGAWDKKKP 1666
>K3YP74_SETIT (tr|K3YP74) DNA-directed RNA polymerase OS=Setaria italica
GN=Si016066m.g PE=3 SV=1
Length = 2050
Score = 360 bits (925), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 294/887 (33%), Positives = 432/887 (48%), Gaps = 141/887 (15%)
Query: 2 LEELKINMAEVFQRCQEKLRSLNRKRKYYQTLKSTELFFSESCASPN-------FSSPCV 54
LE + I+ ++ Q+C+E +K+ + L F + C+ +PCV
Sbjct: 966 LERINISTQDILQKCEEISGRYGKKKGHLCHLFKKITFSTCDCSFAQNTIDGYLHVAPCV 1025
Query: 55 TFI-----SLDGDGLDKTTEILADVICPVLLGTIIQGDPRISSANITWINPDSNAWVRNP 109
F ++ + +++ ++AD +C VLL TII+GDPRI SA I W+ ++ +WV+N
Sbjct: 1026 QFSFSDDNTILSESVERAVNVIADSVCSVLLDTIIKGDPRIQSAKIIWVESEATSWVKNT 1085
Query: 110 SKSSNGELALDIILEEAAVKQSGDAWRIVLDSCLPVLNLIDTRRSIPYAIKQVQELLGIS 169
+ GE L+II+E+ ++G AWR V+D+C+PVLNLIDTRRSIPY I+QV+ELLGIS
Sbjct: 1086 QNTLKGEPTLEIIVEKDEAVRNGYAWRTVMDACIPVLNLIDTRRSIPYGIQQVKELLGIS 1145
Query: 170 CTFDQAIQRLAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPF 229
C FDQ +QRL+ +VKMVAKGVL++HLIL+A+SMTC GNL+GFNT GYKA R L +QVPF
Sbjct: 1146 CAFDQVVQRLSTTVKMVAKGVLKDHLILVANSMTCTGNLIGFNTSGYKATFRSLKVQVPF 1205
Query: 230 TDATLFTPKKCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSRFDVLWDAKERKSNELE 289
T++TLFTP KCFE+AAEKC +DSL +V+SCSWGK A+GTGS F +LW+ + KSN+
Sbjct: 1206 TESTLFTPMKCFEKAAEKCDSDSLGCVVSSCSWGKHAAIGTGSSFQILWNENQLKSNKEY 1265
Query: 290 GMDVYNFLHMVKSLINGEEENDACXXXXXXXXXXXXNA--DYSLSPQH--TSGVDAVFEE 345
G +Y+FL +V++ ++E NA D LSP+ T G FE+
Sbjct: 1266 GDGLYDFLALVRT----DQEKAGYAFLDDVDYLVEENAVDDVCLSPEPDGTHG-KPTFED 1320
Query: 346 TFEAMNGPESNGWGATTDRTETKSTQWSAWESNKAETKDGGSQRVHEDSWT--SRDVMKD 403
E + W E +T S+WE N + D G W+ + K
Sbjct: 1321 NVEEQGIQNGSSW-------ENDTTMNSSWEQNASAGNDSGDW----GGWSNGAAAATKP 1369
Query: 404 DSQMTNAWDGNVEQTKTISNDWTAWGKNKSEIQDNVAEKAEGECGSSEMWK-TAVIQEGS 462
Q + WD + T+ N+ T WG +E Q N GE W E S
Sbjct: 1370 LDQDNSCWDAHA----TVENNSTDWGGWGTEKQTN------GEQAEINTWADKGAGMESS 1419
Query: 463 SKSNAW--KSNIEQRS----DEDSWTSQKLKADVIQDSSKPSSWGAKPKSNDSSNW---- 512
+ + W KS+ ++S D D+W + A S+ ++WG + W
Sbjct: 1420 AGDDNWEMKSSAPEKSKKNLDHDTWGNMPAPASA---SASENTWGEQKGDGGDGAWEKQT 1476
Query: 513 GRNKDEIQDVVSRRAEDDSWSSKKQLSSDATQEDSSKFSFWGGNKDTTKPKS-------N 565
G K++ DV + DSW KK + + D K GN + +P S
Sbjct: 1477 GSCKEQGMDV-----DQDSW-GKKTMPPSSNMWDKKKSDGVHGNWE-EQPSSWNEQMLNV 1529
Query: 566 DWSSWGGNRDGIQDGGSKRAQDDSWSSQKDVTRESSSKVDAWGANNEASNPKSNDW---- 621
D SWG R + + A D W Q + + DA +N A P +N W
Sbjct: 1530 DQDSWGDAR----EKNNSHAGDSRWPEQASTYKRKRTNADAGSWDNMAMAPSNNAWDAGE 1585
Query: 622 ------------SAWG-KNKDGTQDGGSERAQDDSSSLGKWKAESQVEADTVQEDSSKSK 668
S+WG K+K T + + D + GK S + D +Q+ S
Sbjct: 1586 GFGRSITKSDAGSSWGNKDKMETDEHSKIPKEFDPWNTGKSNESSWEKTDALQDSWGNSA 1645
Query: 669 AWERNS-----DNVKVGNS-----SWG----KPKFPETQAWDPQKE---TNQGAGSRGWD 711
A N+ D + V ++ SWG + K + +WD E T+ S G
Sbjct: 1646 ADNNNTQEGSWDKIAVKDTNSQQDSWGNVAVQNKNTQNGSWDNGAEKVPTSDAQDSWGNL 1705
Query: 712 SQIASANSDSDRNFQW---------GKQGRESFK---------KSQGWGSNAGD----MK 749
+ + NSD+ ++ W QG+ + KS+GWG +G+
Sbjct: 1706 AATPAGNSDAKQSDSWDGWNAAPAENSQGKCNETTDSGDNKGWKSEGWGGKSGNWSGQRN 1765
Query: 750 NKNRPGRAP---GP-----RLDMYSSEEQDILKDIEPIVQSIRRIMQ 788
N RP R P GP R ++ ++EE++IL +IEPI+ +RRI +
Sbjct: 1766 NSGRPPRGPDERGPPPPRQRFEL-TAEEKNILLEIEPIMMRVRRIFR 1811
>B9F2S6_ORYSJ (tr|B9F2S6) DNA-directed RNA polymerase OS=Oryza sativa subsp.
japonica GN=OsJ_05410 PE=2 SV=1
Length = 2017
Score = 355 bits (912), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 286/887 (32%), Positives = 434/887 (48%), Gaps = 142/887 (16%)
Query: 2 LEELKINMAEVFQRCQEKLRSLNRKRKYYQ------TLKSTELFFSESCASPNFSS-PCV 54
LE + I+ ++ Q+CQE +K+ + T + + F++ PC+
Sbjct: 1008 LERINISTEDILQKCQEVSGKYGKKKGHLSNLFKNITFSTCDCLFTQKLVDGKLPKLPCL 1067
Query: 55 TFISLD----GDGLDKTTEILADVICPVLLGTIIQGDPRISSANITWINPDSNAWVRNPS 110
F D + +++ +LAD +C VLL TII+GDPRI A I W+ D+ +WV+N
Sbjct: 1068 QFFVSDNMIVSESVERAVSVLADSLCGVLLNTIIKGDPRIQEAKIVWVGSDATSWVKNTQ 1127
Query: 111 KSSNGELALDIILEEAAVKQSGDAWRIVLDSCLPVLNLIDTRRSIPYAIKQVQELLGISC 170
K+S GE A++II+EE GDAWR +D+C+PVLNLID RRSIPY I+QV+ELLGISC
Sbjct: 1128 KASKGEPAVEIIVEEEEALHIGDAWRTTMDACIPVLNLIDIRRSIPYGIQQVRELLGISC 1187
Query: 171 TFDQAIQRLAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFT 230
FDQ +QRL+ +V+MVAK VL++HL+L+A+SMT GNL GFN GYKA R L +QVPFT
Sbjct: 1188 AFDQVVQRLSTTVRMVAKDVLKDHLVLVANSMTFTGNLNGFNNAGYKATFRSLKVQVPFT 1247
Query: 231 DATLFTPKKCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSRFDVLWDAKERKSNELEG 290
++TL TP KCFE+AAEKCH+DSL +V+SCSWGK A GTGS F +LW+ + KSN+ G
Sbjct: 1248 ESTLITPMKCFEKAAEKCHSDSLGCVVSSCSWGKHAASGTGSSFQILWNESQLKSNKEYG 1307
Query: 291 MDVYNFLHMVKSLINGEEENDACXXXXXXXXXXXXNADYSLSPQHTSGV-DAVFEETFEA 349
+Y++L +V++ EE+ AD LSP+ + +F++ E
Sbjct: 1308 DGLYDYLALVRT---DEEKARYTFFDDVDYLAEENEADVCLSPELDGTIGQPIFDDNLEE 1364
Query: 350 MNGPESNGW--GATTDRTETKSTQWSAWESNKAETKDGGSQRVHEDSWTSRD--VMKDDS 405
+ ++ W G TT+ ++WE N + D D+ D V K +
Sbjct: 1365 QDVQNNSSWDNGTTTN---------ASWEQNGSAGNDSDKWGGWNDAAAGADTGVTKPAN 1415
Query: 406 QMTNAWDGNVEQTKTISNDWTAWGKNKSEIQDNVAEKAEGECGSSEMWKTAVIQEGSSKS 465
Q + WD K+ S+DW WG K++ ++ ++E E + W + +
Sbjct: 1416 QGNSCWDVPATVEKS-SSDWGGWGTEKAKEKEKISE----EPAQHDAWSVQGPKRATDGG 1470
Query: 466 NAWKSNIEQRSDEDSWTSQKLKADVIQDSSKPSSWGAKPKSN-DSSNWGRNKDEIQDVVS 524
+WK ++D +SW K + S+ G+ K N +WGR DE ++ +
Sbjct: 1471 ASWKKQSSTQNDGNSWKENK---------GRGSNGGSWEKDNAQKGSWGRGNDEAEN--N 1519
Query: 525 RRAEDDSWSSKKQLSSDATQEDSSKFSFWGGNKDTTKPKSNDWSSWGGNRDGIQDGGSKR 584
++ SW + +++DA +S WG T P N WS+ ++ +G S
Sbjct: 1520 NDVQNKSWET---VAADA---HASTEKSWGNV--TASPSDNAWSAAPVSQG---NGSSDT 1568
Query: 585 AQDDSWSS------QKDVTRE--------SSSKVDAWGAN-----NEASNPKSND----W 621
Q DSW K + ++ +S AW A+ NE S+ K +D W
Sbjct: 1569 KQSDSWDGWKSAGVDKAINKDKESLGNVPASPSFSAWNASPVSQGNERSDAKQSDSWDGW 1628
Query: 622 SAWGKNKDGTQDGGSERAQDDSSSLGKWKAESQVEADTVQEDSSKSKAWE----RNSDNV 677
+ G +K +D S S S W A + V + D+ +S +W+ D+
Sbjct: 1629 KSAGVDKAINKDKESLGNVPASPSFSAWNA-APVSQGNERLDAKQSDSWDGWKSAGVDDS 1687
Query: 678 KVGNSSWGK-PKFPETQAWD--PQKETNQGAGSR------GWDSQIASANSDSDRNFQWG 728
SWG P P AW+ P + N+ + ++ GW S A+++ D+ WG
Sbjct: 1688 VKDKESWGNVPASPSDSAWNAAPVSQGNESSDAKQSDSWDGWKSAGVDASTNKDKE-SWG 1746
Query: 729 K----------------QGRESFK------------KSQGWGSNAGDMK-NKNRPGRAP- 758
QG + + KS GWG+ G+ + +N PGR P
Sbjct: 1747 NVPASPSDSAWNAAPVSQGDDVWNSAEANESRNKDWKSDGWGARGGNWRGQRNNPGRPPR 1806
Query: 759 --------------GP---RLDMYSSEEQDILKDIEPIVQSIRRIMQ 788
GP D+ ++EE+ IL +IEP V SIR+I +
Sbjct: 1807 KPDGRGLPRRPDERGPPRRHFDL-TAEEEKILGEIEPTVLSIRKIFR 1852
>J3L9M9_ORYBR (tr|J3L9M9) DNA-directed RNA polymerase OS=Oryza brachyantha
GN=OB02G13460 PE=3 SV=1
Length = 2034
Score = 353 bits (905), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 296/916 (32%), Positives = 434/916 (47%), Gaps = 176/916 (19%)
Query: 2 LEELKINMAEVFQRCQEKLRSLNRKRKYYQTLKSTELF------FSESCASPNFSS-PCV 54
LE + +++ ++FQ+CQE +K+ + L F F++ + PC+
Sbjct: 994 LERINVSIEDIFQKCQEVSGKYGKKKGHLSHLFKNITFSICDCSFTQKLIDGKLAKVPCL 1053
Query: 55 TFI-----SLDGDGLDKTTEILADVICPVLLGTIIQGDPRISSANITWINPDSNAWVRNP 109
F ++ + ++ +LAD +C VLL TII+GDPRI A I W+ D+ +WV+N
Sbjct: 1054 QFFFPESNTMLSESVEGAVNLLADSVCGVLLNTIIKGDPRIQEAKIVWVGSDATSWVKNT 1113
Query: 110 SKSSNGELALDIILEEAAVKQSGDAWRIVLDSCLPVLNLIDTRRSIPYAIKQVQELLGIS 169
K S GE A++II+EE +GD+WRI +D+C+PVL+LIDTRRSIPY I+Q++ELLGIS
Sbjct: 1114 KKESKGEPAVEIIVEEQEALHTGDSWRITMDACIPVLDLIDTRRSIPYGIQQLRELLGIS 1173
Query: 170 CTFDQAIQRLAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPF 229
C FDQ +QRL+ +V+MVAK VL++HL+L+A+SMT GNL GFNT GYK R L +QVPF
Sbjct: 1174 CAFDQVVQRLSTTVRMVAKDVLKDHLVLVANSMTFTGNLNGFNTAGYKTTFRSLKVQVPF 1233
Query: 230 TDATLFTPKKCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSRFDVLWDAKERKSNELE 289
T++TL TP KCFE+AAEKCH+DSL +V+SCSWGK A GTGS F +LW+ + KSN+
Sbjct: 1234 TESTLITPMKCFEKAAEKCHSDSLGCVVSSCSWGKYAASGTGSSFQILWNESQLKSNKEY 1293
Query: 290 GMDVYNFLHMVKSLINGEEENDACXXXXXXXXXXXXNADYSLSPQHTSGV-DAVFEETFE 348
G +Y++L +V++ EE+ D LSP+ + F++ E
Sbjct: 1294 GDGLYDYLALVRT---DEEKARYTFFDDVDYLAEENETDVCLSPELEGTIGQPTFDDNLE 1350
Query: 349 AMNGPESNGWGATTDRTETKSTQWSAWESNKAETKD----GG--SQRVHEDSWTSRDVMK 402
+ ++N W E + +WE N + D GG + V D+ V K
Sbjct: 1351 EQDFQKNNSW-------ENGTAANGSWEQNGSAGDDSDKWGGWNAAAVGADT----AVTK 1399
Query: 403 DDSQMTNAWDGNVEQTKTISNDWTAWGKNKSEIQDNVAEKAEGECGSSEMWKTAVIQEG- 461
Q + WD K+ S+DW WG K ++++N+ E E + W +G
Sbjct: 1400 QADQEKSCWDVPAAVEKS-SSDWGGWGTEKRKVKENLPE----EPAEHDAWLAKRSMDGG 1454
Query: 462 -------SSKSNAWKSNIEQRSDEDSWTSQKLKADVIQ-DSSKP----SSWGAKPKSND- 508
S S+ +K N+ D+ SW + L A+ D KP ++W + + +
Sbjct: 1455 DINWGKQPSISDEFKKNV----DQGSWGNMSLSAENRAWDKKKPDGGDATWNKQSSTQND 1510
Query: 509 --------SSNWGRNK---------------------DEIQDVVSRRAEDDSWSSKKQLS 539
S W NK DE + + + D+W S +
Sbjct: 1511 GGDTWEKQPSAWKENKGRGSNGGSWEKSNSQKGSWGNDEAHN--NANMKQDTWGSVTAHN 1568
Query: 540 SDATQEDSSKFSFWG-----GNKDTTK--------PKSNDW-----SSWGGNRDGIQDGG 581
+D TQ S WG N T K P N W S N D Q G
Sbjct: 1569 ND-TQNKS-----WGTVDAKANTSTEKSWGNVIASPSDNAWNAAPVSQGNENSDAKQPGS 1622
Query: 582 -----SKRAQDDSWSSQKDV--TRESSSKVDAWGA-----NNEASNPK-SNDWSAWGKNK 628
S RA DDS + K+ +S +AW A +E+S+ K S W W +
Sbjct: 1623 WEGWNSARA-DDSSTKDKEPWGNVAASPSFNAWNAAPVSQGDESSDAKQSGSWEGWNSAR 1681
Query: 629 DGTQDGGSERAQDD---SSSLGKWKAESQVEADTVQEDSSKSKAWE-----RNSDNVKVG 680
+ D+ SSS W A + D+ +S +WE R D +
Sbjct: 1682 ADNSTTKDKEPWDNVVASSSDNAWNAAPVCHGNE-SSDAKQSGSWEGWNSSRAEDLSRKD 1740
Query: 681 NSSWGK-PKFPETQAWD--PQKETNQGAGSR------GWDSQIASANSDSDRNFQWGKQG 731
N SWG P AW+ P + N+ + ++ GW+S A S+ D W
Sbjct: 1741 NESWGNVASSPSDSAWNAAPVSQENKNSDTKQPGSWDGWNSSQADEPSNKD----W---- 1792
Query: 732 RESFKKSQGWGSNAGDMK-NKNRPGRAP---------------GP---RLDMYSSEEQDI 772
KS GWG+ G+ + ++ PGR P GP D+ + EE+ I
Sbjct: 1793 -----KSDGWGARGGNWRGQRSNPGRPPRKSDGRGPPRRPDDRGPPRRHFDL-TPEEEKI 1846
Query: 773 LKDIEPIVQSIRRIMQ 788
L +IEPIV SIR+I +
Sbjct: 1847 LGEIEPIVLSIRKIFR 1862
>M0SC38_MUSAM (tr|M0SC38) DNA-directed RNA polymerase OS=Musa acuminata subsp.
malaccensis PE=3 SV=1
Length = 1433
Score = 348 bits (894), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 240/709 (33%), Positives = 354/709 (49%), Gaps = 102/709 (14%)
Query: 2 LEELKINMAEVFQRCQEKLRSLNRKRKYYQTLKSTELFFSESCASPNFSS-------PCV 54
L+ L IN ++ +CQ + S +K+ + C S S PC+
Sbjct: 743 LKLLNINPDDILHKCQAVIFSYGKKKGQLSHFFRRIFLSTCKCCSIKQPSDGNLCHLPCL 802
Query: 55 TFISLDGDG------LDKTTEILADVICPVLLGTIIQGDPRISSANITWINPDSNAWVRN 108
F D + L++ ++++ ICP+LL TI++GDPR+ I WI PD+ +WV +
Sbjct: 803 QFSYADANASQNNISLERAIHVMSETICPILLDTIVKGDPRVHEVKIVWIGPDATSWVGS 862
Query: 109 PSKSSNGELALDIILEEAAVKQSGDAWRIVLDSCLPVLNLIDTRRSIPYAIKQVQELLGI 168
K+ G+L L+++L + AV+QSGDAWR VLD+CLPV++LIDT RSIPY I+Q+QE+LGI
Sbjct: 863 SCKTLKGDLGLEVVLGQDAVRQSGDAWRTVLDACLPVMHLIDTGRSIPYGIQQIQEVLGI 922
Query: 169 SCTFDQAIQRLAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVP 228
SC FDQA+QRL+ S+KMV+KGV++EHL+L+A+SMTC G L+GFNTGGYKAL R ++VP
Sbjct: 923 SCAFDQAVQRLSKSIKMVSKGVMKEHLLLVANSMTCTGKLIGFNTGGYKALFRSFKVEVP 982
Query: 229 FTDATLFTPKKCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSRFDVLWDAKERKSNEL 288
FT ATLFTP KCFERAAEKC DSL+S+V+SCSWGK VA+GTG+ F +LWD K+ N+
Sbjct: 983 FTAATLFTPMKCFERAAEKCQVDSLASVVSSCSWGKNVAIGTGAPFQILWDKKQMAMNKD 1042
Query: 289 EGMDVYNFLHMVKSLINGE-------------EENDACXXXXXXXXXXXXNADYSLSPQH 335
G VY+FL +++ +GE EEN C + D ++
Sbjct: 1043 IGKGVYDFLELLRETSSGEATGRYLADVDELAEENGIC---------LSPDLDGCMTFDD 1093
Query: 336 TSGVDAVFEETFEAMNG----------PES------NGWG----ATTDRTE---TKSTQW 372
+ V+ F++ +NG P S GWG D E TK W
Sbjct: 1094 SDDVEYNFQKRIGVVNGKSGESSWEVDPVSVKSGNWEGWGDKESTHVDNCESPATKHNVW 1153
Query: 373 SAWESNKAETKDGGSQRVHEDSWTSRDVMKDDSQMTNAWDGNVEQTKTISNDWTAWGKNK 432
S+W+S + + K S+ + D+ D+ + ++ +++ AWGK K
Sbjct: 1154 SSWDSIQVKQKTVESENLAGDTVPGEDM-------------DAQKHSGTADESVAWGKWK 1200
Query: 433 SEIQDNVAEKAEGECGSSEMWKTAV-IQEGSSKSNAWKSNIEQRSDEDSWTSQKLKADVI 491
++ +K +E KT V ++EGS N S+ + + ++DS
Sbjct: 1201 ADGNSTARDKLSHRNCWNEASKTKVDLKEGSPVWNRTASSPKSKHNQDSLF--------- 1251
Query: 492 QDSSKPSSWGAKPKSNDSSNWGRNKDEIQDVVSRRAEDDSWSSKKQLS-----SDATQED 546
S P +W ++ + WG++ + R D W + S +T+
Sbjct: 1252 ---STPGTWSSQ---SSGKPWGQDN---ANNTKRNIAQDGWRCAESPVTNIWDSTSTRNA 1302
Query: 547 SSKFSFWGGNKDTTKPKSNDWSSWGGNRDGIQDGGSKRAQDDSWSSQKDVTRESSSKVDA 606
+ S W GN P N W GN D +D S+ + + +S R S
Sbjct: 1303 NVSDSQWSGN-----PSKNLDIQWDGN-DSNKDLDSQWCGNVTSTSNTSEGRNQSWNSRG 1356
Query: 607 WGANNEASNPKSNDWSAWGKNKDGTQDG-GSERAQDDSSSLGKWKAESQ 654
WG+ N +SA K +Q G S RA L AE +
Sbjct: 1357 WGSANPPGRKNQKTFSARFPGKSASQKGWNSNRALASGRRLESLTAEEE 1405
>I1IV91_BRADI (tr|I1IV91) DNA-directed RNA polymerase OS=Brachypodium distachyon
GN=BRADI4G45065 PE=3 SV=1
Length = 1954
Score = 347 bits (891), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 276/885 (31%), Positives = 420/885 (47%), Gaps = 164/885 (18%)
Query: 2 LEELKINMAEVFQRCQEKLRSLNRKRKYYQTLKSTELFFSESCA---SPNFSS-----PC 53
L+ + ++ ++ Q+CQE +K+ + L F + C+ P PC
Sbjct: 952 LDMINVSTEDILQKCQEVSLKHGKKKGHLGHLFKKITFSTCDCSFTQKPMIDGKLPKVPC 1011
Query: 54 VTF-----ISLDGDGLDKTTEILADVICPVLLGTIIQGDPRISSANITWINPDSNAWVRN 108
+ F I + + +++ +LA+ +C VLL TII+GDPRI A I W+ D+ +WV+N
Sbjct: 1012 LQFSFSEDIPMLSESVERAVSVLANSLCDVLLDTIIKGDPRIQEAKIMWVGSDAQSWVKN 1071
Query: 109 PSKSSNGELALDIILEEAAVKQSGDAWRIVLDSCLPVLNLIDTRRSIPYAIKQVQELLGI 168
K S GE ++I++E+ + GDAWRI +D+C+PV++LIDTRRSIPY I+QV+ELLGI
Sbjct: 1072 TRKVSKGEPTVEIVVEKNEASKQGDAWRIAMDACIPVIDLIDTRRSIPYGIQQVRELLGI 1131
Query: 169 SCTFDQAIQRLAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVP 228
SC+FDQ +QRL+ ++K VAKG+L++HLIL+A+SMTC GNL GFNTGGY+A R L +QVP
Sbjct: 1132 SCSFDQIVQRLSTTMKTVAKGILKDHLILVANSMTCTGNLYGFNTGGYRATFRALKVQVP 1191
Query: 229 FTDATLFTPKKCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSRFDVLWDAKERKSNEL 288
FT++TLFTP KCFE+AAEKCH+D+L +V+SCSWGK A+GTGS F +LW+ + KSN+
Sbjct: 1192 FTESTLFTPMKCFEKAAEKCHSDALGCVVSSCSWGKHAALGTGSSFQILWNENQLKSNKE 1251
Query: 289 EGMDVYNFLHMVKSLINGEEENDACXXXXXXXXXXXXNA--DYSLSPQH--TSGVDAVFE 344
G +Y+FL MV++ ++E NA D LSP+ T GV FE
Sbjct: 1252 YGDGLYDFLAMVRT----DQEKARYTFLDDVDYLVEDNAMDDICLSPELNGTHGV-PTFE 1306
Query: 345 ETFE-----------------------AMNGPESNGWGA--------------------- 360
+ FE A G +S+ WG
Sbjct: 1307 DNFEHQDTQNGNSWENGTKANASWEQNASAGNDSDNWGGWSNAAAAADTGAAKPADQGNS 1366
Query: 361 ---TTDRTETKSTQWSAWESNKA-ETKDGGSQRVHEDSWTSRDVMKDDSQMTNAWDGNVE 416
E ST W W + KA + + ++ D+W+ R K + +
Sbjct: 1367 SWDVPATAENDSTDWGGWGNEKAKDNRTVSTEPAELDTWSDRGAKKGTDGGGGS---WGK 1423
Query: 417 QTKTISNDWT-----AWGKNKSEIQDNVAEKAEGECGSSEMWKTAVIQEGSSKSNAWKSN 471
QT T + T +W K S + K + G W ++N+ K N
Sbjct: 1424 QTNTCEDSGTNLERNSWAKRPSSPSLSTWAKKNSD-GGDGTW--------DKQANSCKKN 1474
Query: 472 IEQRSDEDSWTSQKLKADVIQDSSKPSSWGAKPKSNDSSNWGRNKDEIQDVVSRR----- 526
+EQ DSW + + S ++W K S + W +++ +
Sbjct: 1475 VEQ----DSWKNMPV-------SPARNAWNKKESSRGDATWEMRASTLEEKKTSESNEGS 1523
Query: 527 -----AEDDSWSSKKQLSSD--ATQEDSSKFSFWGGNKDTTKPKSNDWSSWGGNRDGIQD 579
A+ DSW + + SSD A +++ + WG +D WG Q
Sbjct: 1524 WEKSNAQKDSWGNTQHGSSDKMAVKDNDMQQDPWGHIATQNINAQDDL--WGSVAAKAQT 1581
Query: 580 GGSKR--AQDDSWSSQKDVTRESSSKVDAWGANNEASNPKSNDWSAWGKNKDGTQDGGSE 637
++ AQDDSW + + S+++ ++WG N A++P N W A +Q +E
Sbjct: 1582 STAENTDAQDDSWGAVAAKAQTSTAQ-ESWG--NVAASPSDNAWKA----PPISQTSAAE 1634
Query: 638 RAQDDSSSLGKWKAESQVEADTVQEDSSKSKAWERNSDNVKVGNSSWGKPKFPETQAWD- 696
+ S G A++Q T Q++S W GN++ P AW+
Sbjct: 1635 HTDAHNDSWGIVAAKAQTS--TAQQES-----W---------GNATAS----PSDNAWNA 1674
Query: 697 -PQKETNQGAGS-RGWDSQIA----SANSDSDRNFQWGKQGRESFKKSQGWGSNAGDMKN 750
P + GS GW S +A A+ S++N W KS GWG+
Sbjct: 1675 APMDLDAKQPGSWDGWSSALAEDSNKADDSSNKNKGW---------KSDGWGAKGNRRDQ 1725
Query: 751 KNRPGRAPGPRLDM-------YSSEEQDILKDIEPIVQSIRRIMQ 788
++ P P + +E + IL++IEPIV +R+I +
Sbjct: 1726 RDNPSMPPMRPDERPPRPRFEVPAEAKKILREIEPIVSMVRKIFR 1770
>A5BGS4_VITVI (tr|A5BGS4) Putative uncharacterized protein OS=Vitis vinifera
GN=VITISV_024603 PE=4 SV=1
Length = 1081
Score = 340 bits (871), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 268/753 (35%), Positives = 377/753 (50%), Gaps = 170/753 (22%)
Query: 84 IQGDPRISSANITWINPDSNAWVRNPSKSSNGELALDIILEEAAVKQSGDAWRIVLDSCL 143
I D R+ + NI WI+PD+ W+RNP KS GELALDI+LE+AAVKQ GDAWRIVLD+CL
Sbjct: 264 IICDSRVCTVNIIWISPDTTTWIRNPCKSRKGELALDIVLEKAAVKQRGDAWRIVLDACL 323
Query: 144 PVLNLIDTRRSIPYAIKQVQELLGISCTFDQAIQRLAASVKMVAKGVLREHLILLASSMT 203
PVL+LIDTRRSIPYAIKQVQELLGISC FDQA+QRL+ SV MVAKGVL+EHLILLA+SMT
Sbjct: 324 PVLHLIDTRRSIPYAIKQVQELLGISCAFDQAVQRLSKSVTMVAKGVLKEHLILLANSMT 383
Query: 204 CGGNLVGFNTGGYKALARQLNIQVPFTDATLFTPKKCFERAAEKCHTDSLSSIVASCSWG 263
C GNL+GFN+GGYKAL+R LN+QVPFT+ATLF
Sbjct: 384 CAGNLIGFNSGGYKALSRALNLQVPFTEATLF---------------------------- 415
Query: 264 KPVAVGTGSRFDVLWDAKERKSNELEGMDVYNFLHMVKSLINGEEENDACXXXXXX-XXX 322
+ TGSRFDVLWD KE + G+D+Y+FLH+V+S G+E + AC
Sbjct: 416 ----LVTGSRFDVLWDTKEIGPAQDGGIDIYSFLHLVRSGSYGKEPDTACLGAEVEDLIL 471
Query: 323 XXXNADYSLSPQHTSGVD-AVFEETFEAMNG-----PESNG-WGATTDRTETKST----Q 371
N + +SP+H+S + VFE++ E N P+S G W ++ T ST
Sbjct: 472 EDENLELGMSPEHSSNFEKPVFEDSAEFQNTWENHVPDSGGDWAVNQNKETTASTLKPSA 531
Query: 372 WSAWESNKAETKDGGSQRVHEDSWTSRDVMKDDSQMTNAWDGNVEQTKTISNDWTAWGKN 431
WS+W ++K KD S R E+S SR + WD D WG +
Sbjct: 532 WSSWGTDKVTMKDTFSTREPEES--SR---------SAGWD-----------DKGTWGTD 569
Query: 432 KSEIQDNVAEKAEGECGSSEMWKTAVIQEGSSK--SNAWKSNIEQRSDEDSWTSQ----- 484
K++ N A + E + ++G + S+AW I++ +D+ W
Sbjct: 570 KAQ---NTAFRRTHEDSPRSSGRDETFRDGRPQFASSAWGKKIDE-ADKTGWNKNDGKPQ 625
Query: 485 --KLK------ADVIQDSSKPSSWGAKPKSNDSSNWGRNKDEIQDVVSRRAEDDSWSSKK 536
KL+ V Q+ + S++G S+ + +W +N+ +++ V + + S
Sbjct: 626 MDKLRESCDWDCKVAQEKTTQSTYGG--ISSTTGDWKKNELQMEVVQHDESPVNEHSWDA 683
Query: 537 QLSSDATQEDSSKFSFWGGNKDTTKPKSNDWSSWGGNRDGIQDGGSKRAQD---DSWSSQ 593
L D + ++ G + T K DW+ + +Q S++ +D SWSS
Sbjct: 684 NLPEDPLAQATTSV---GWDSSTGK----DWT-----KRKLQS-PSEQQRDPAIKSWSSS 730
Query: 594 KDVTRESSSKVDAWGANNEASNPKSNDWSAWGKNKDGTQDGGSERAQDDSSSLGKWKAES 653
+V +E S++ + + +P + W+ + Q G + + SS G W +
Sbjct: 731 HNVMKEQSNQP---ASTHGWDSPGAKGWNDVEEQSQWNQRGSAVKNDQSESSHG-WGPSN 786
Query: 654 QVEADTVQEDSSKSKAWERNSDNVKVGNSSWGKPKFPETQA-W-DPQKETNQGAGSRGWD 711
+ Q S+ W S N G+ S ETQ+ W P + ++ GSRGW
Sbjct: 787 E------QNQLPSSQGW--GSPNAGAGHES-------ETQSQWGQPSGKKSRPEGSRGWG 831
Query: 712 SQIASANSDSDRNFQWGKQGRESFKKSQGWGSNAGDMKNKNRPGRAPGP----------- 760
S N +W + KNRP + GP
Sbjct: 832 SN----------NTEWKNK--------------------KNRPNKPQGPLNDDYSAGGIF 861
Query: 761 -----RLDMYSSEEQDILKDIEPIVQSIRRIMQ 788
R+D+++SEEQDIL D+EPI+QSIRRIM
Sbjct: 862 TATRQRVDIFTSEEQDILLDVEPIMQSIRRIMH 894
>M8BMS2_AEGTA (tr|M8BMS2) DNA-directed RNA polymerase II subunit RPB1-B OS=Aegilops
tauschii GN=F775_02057 PE=4 SV=1
Length = 2017
Score = 338 bits (866), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 240/698 (34%), Positives = 349/698 (50%), Gaps = 96/698 (13%)
Query: 2 LEELKINMAEVFQRCQEKLRSLNRKRKYYQTLKSTELFFSESCASP----NFSSPCVTF- 56
LE++ ++ E+ Q+CQE K+ L F + C+ + PC+ F
Sbjct: 1050 LEKINVSTDEILQKCQEVSGKHANKKGTLGHLFKKITFSTCDCSFAQKPGDGKVPCLQFS 1109
Query: 57 ----ISLDGDGLDKTTEILADVICPVLLGTIIQGDPRISSANITWINPDSNAWVRNPSKS 112
I + D ++K +LAD +C VLL II+GDPR+ A ITW+ D+ +WV++ K
Sbjct: 1110 FSEDIPMLSDSVEKAVNVLADSLCGVLLEIIIKGDPRVQEAKITWVGSDATSWVKHTKKI 1169
Query: 113 SNGELALDIILEEAAVKQSGDAWRIVLDSCLPVLNLIDTRRSIPYAIKQVQELLGISCTF 172
S GE A++II+E+ Q+GDAWRI +D+C+PV+NLIDT+RSIPY I+QV+ELLGISC+F
Sbjct: 1170 SKGEPAVEIIVEKKEAMQNGDAWRIAMDACIPVMNLIDTQRSIPYGIQQVRELLGISCSF 1229
Query: 173 DQAIQRLAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDA 232
DQ +QRL+ ++K VAKG+L++HL+L+A+SMTC GNL GF+ GGY+A R L +QVPFT+A
Sbjct: 1230 DQVVQRLSKTMKTVAKGILKDHLVLVANSMTCTGNLNGFHNGGYRATFRSLKVQVPFTEA 1289
Query: 233 TLFTPKKCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSRFDVLWDAKERKSNELEGMD 292
TL TP KCFE+AAEKCH+DSL S+V+SCSWGK A+GTGS F +LW+ + KSN+ G
Sbjct: 1290 TLLTPMKCFEKAAEKCHSDSLGSVVSSCSWGKHAALGTGSSFQILWNENQLKSNKEYGDG 1349
Query: 293 VYNFLHMVKSLINGEEENDACXXXXXXXXXXXXNA--DYSLSPQH--TSGVDAVFEETFE 348
+Y+FL +V++ ++E A NA D LSP+ T G+ FE+ E
Sbjct: 1350 LYDFLALVRT----DQEKAAYTFLDDVDYLVEDNAMDDICLSPEMDGTHGM-PTFEDDPE 1404
Query: 349 AMNGPESNGW------GATTDR----------------TETKSTQWSAWESNKAETKDGG 386
N + + W GA+ +R E ST W+ W + A K
Sbjct: 1405 QQNTEKDSSWENGTTAGASWERNANAGNDSGNWGGGSTVENDSTDWAGWGTGPANDKKIV 1464
Query: 387 SQRVHE-DSWTSRDVMKDDSQMTNAWDG-----NVEQTKTISNDWTAWGKNKSEIQDNVA 440
S E D+W + KD W+ + K D + W + D+
Sbjct: 1465 SGEPAEPDTWADQGAKKDTE---GGWNNAAAAADTGAAKPAEQDKSCWNAPPAVENDSSG 1521
Query: 441 EKAEGECGSSEMWKTAVIQEGSSKSNAWKSNIEQRSDED----SWTSQKLKADVIQDSSK 496
G + + + EGS++ + W +R D D +W K+K +Q
Sbjct: 1522 WGGWGTGNAKD---KNIASEGSAEVDTWADQSGKR-DTDGGGANWDKMKVKDHNMQQ--- 1574
Query: 497 PSSWGAKPKSNDSSN---WGRNKDEIQDVVSRR--AEDDSWSSKKQLSSDATQEDSSKFS 551
WG P N + WG Q ++ A++DSW S + +T E
Sbjct: 1575 -DQWGHVPSQNVDAQDDPWGSVAGVAQPSTAKHIDAQNDSWGSVAAKAQTSTAE------ 1627
Query: 552 FWGGNKDTTKPKSNDWSSWGGNRDGIQDGGSKRAQDDSWSSQKDVTRESSSKVDAWGANN 611
P SWG Q + AQ +SW + +S +AWGA
Sbjct: 1628 ----------PMDAGNGSWGSVAAKAQ---TYTAQQESWGN-----VSASPSDNAWGAAP 1669
Query: 612 EASNPKSND------WSAWGKNKDGTQDGGSERAQDDS 643
+ P ++D W WG +Q S+ Q DS
Sbjct: 1670 VSQGPDNSDAKQPDSWDGWGSAAPVSQGDNSDAKQPDS 1707
>I1NXC6_ORYGL (tr|I1NXC6) DNA-directed RNA polymerase OS=Oryza glaberrima PE=3 SV=1
Length = 1630
Score = 324 bits (830), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 215/589 (36%), Positives = 318/589 (53%), Gaps = 61/589 (10%)
Query: 2 LEELKINMAEVFQRCQEKLRSLNRKRKYYQTLKSTELFFSESCAS---------PNFSSP 52
LE + I+ ++ Q+CQE +K+ + L F + C+ P P
Sbjct: 1008 LERINISTEDILQKCQEVSGKYGKKKGHLSNLFKNITFSTCDCSFTQKLVDGKLPKL--P 1065
Query: 53 CVTFISLD----GDGLDKTTEILADVICPVLLGTIIQGDPRISSANITWINPDSNAWVRN 108
C+ F D + +++ +LAD +C VLL TII+GDPRI A I W+ D+ +WV+N
Sbjct: 1066 CLQFFVSDNMIVSESVERAVSVLADSLCGVLLNTIIKGDPRIQEAKIVWVGSDATSWVKN 1125
Query: 109 PSKSSNGELALDIILEEAAVKQSGDAWRIVLDSCLPVLNLIDTRRSIPYAIKQVQELLGI 168
K+S GE A++II+EE GDAWR +D+C+PVLNLID RRSIPY I+QV+ELLGI
Sbjct: 1126 TQKASKGEPAVEIIVEEEEALHIGDAWRTTMDACIPVLNLIDIRRSIPYGIQQVRELLGI 1185
Query: 169 SCTFDQAIQRLAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVP 228
SC FDQ +QRL+ +V+MVAK VL++HL+L+A+SMT GNL GFN GYKA R L +QVP
Sbjct: 1186 SCAFDQVVQRLSTTVRMVAKDVLKDHLVLVANSMTFTGNLNGFNNAGYKATFRSLKVQVP 1245
Query: 229 FTDATLFTPKKCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSRFDVLWDAKERKSNEL 288
FT++TL TP KCFE+AAEKCH+DSL +V+SCSWGK A GTGS F +LW+ + KSN+
Sbjct: 1246 FTESTLITPMKCFEKAAEKCHSDSLGCVVSSCSWGKHAASGTGSSFQILWNESQLKSNKE 1305
Query: 289 EGMDVYNFLHMVKSLINGEEENDACXXXXXXXXXXXXNADYSLSPQHTSGV-DAVFEETF 347
G +Y++L +V++ EE+ AD LSP+ + +F++
Sbjct: 1306 YGDGLYDYLALVRT---DEEKARYTFFDDVDYLAEENEADVCLSPELDGTIGQPIFDDNL 1362
Query: 348 EAMNGPESNGW--GATTDRTETKSTQWSAWESNKAETKDGGSQRVHEDSWTSRD--VMKD 403
E + ++ W G TT+ ++WE N + D D+ D V K
Sbjct: 1363 EEQDVQNNSSWDNGTTTN---------ASWEQNGSAGNDSDKWGGWNDAAAGADTGVTKP 1413
Query: 404 DSQMTNAWD--GNVEQTKTISNDWTAWGKNKSEIQDNVAEKAEGECGSSEMWKTAVIQEG 461
Q + WD VE++ S+DW WG K++ ++ ++E E + W +
Sbjct: 1414 ADQGNSCWDVPATVEKS---SSDWGGWGTEKAKEKEKISE----EPAQHDAWSVQGPKRA 1466
Query: 462 SSKSNAWKSNIEQRSDEDSWTSQKLKADVIQDSSKPSSWGAKPKSN-DSSNWGRNKDEIQ 520
+ +WK ++D +SW K + S+ G+ K N +WGR DE +
Sbjct: 1467 TDGGASWKKQSSTQNDGNSWKENK---------GRGSNGGSWEKDNAQKGSWGRGNDEAE 1517
Query: 521 DVVSRRAEDDSWSSKKQLSSDATQEDSSKFSFWGGNKDTTKPKSNDWSS 569
+ + ++ SW + +++DA +S WG T P N WS+
Sbjct: 1518 N--NNDVQNKSWET---VAADA---HASTEKSWGNV--TASPSDNAWSA 1556
>B8AHU1_ORYSI (tr|B8AHU1) DNA-directed RNA polymerase OS=Oryza sativa subsp. indica
GN=OsI_05888 PE=3 SV=1
Length = 1867
Score = 305 bits (782), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 254/774 (32%), Positives = 381/774 (49%), Gaps = 126/774 (16%)
Query: 87 DPRISSANITWINPDSNAWVRNPSKSSNGELALDIILEEAAVKQSGDAWRIVLDSCLPVL 146
DPRI A I W+ D+ +WV+N K+S GE A++II+EE GDAWR +D+C+PVL
Sbjct: 983 DPRIQEAKIVWVGSDATSWVKNTQKASKGEPAVEIIVEEEEALHIGDAWRTTMDACIPVL 1042
Query: 147 NLIDTRRSIPYAIKQVQELLGISCTFDQAIQRLAASVKMVAKGVLREHLILLASSMTCGG 206
NLID RRSIPY I+QV+ELLGISC FDQ +QRL+ +V+MVAK VL++HL+L+A+SMT G
Sbjct: 1043 NLIDIRRSIPYGIQQVRELLGISCAFDQVVQRLSTTVRMVAKDVLKDHLVLVANSMTFTG 1102
Query: 207 NLVGFNTGGYKALARQLNIQVPFTDATLFTPKKCFERAAEKCHTDSLSSIVASCSWGKPV 266
NL GFN GYKA R L +QVPFT++TL TP KCFE+AAEKCH+DSL +V+SCSWGK
Sbjct: 1103 NLNGFNNAGYKATFRSLKVQVPFTESTLITPMKCFEKAAEKCHSDSLGCVVSSCSWGKHA 1162
Query: 267 AVGTGSRFDVLWDAKERKSNELEGMDVYNFLHMVKSLINGEEENDACXXXXXXXXXXXXN 326
A GTGS F +LW+ + KSN+ G +Y++L +V++ EE+
Sbjct: 1163 ASGTGSSFQILWNESQLKSNKEYGDGLYDYLALVRT---DEEKARYTFFDDVDYLAEENE 1219
Query: 327 ADYSLSPQHTSGV-DAVFEETFEAMNGPESNGW--GATTDRTETKSTQWSAWESNKAETK 383
AD LSP+ + +F++ E + ++ W G TT+ ++WE N +
Sbjct: 1220 ADVCLSPELDGTIGQPIFDDNLEEQDVQNNSSWDNGTTTN---------ASWEQNGSAGN 1270
Query: 384 DGGSQRVHEDSWTSRD--VMKDDSQMTNAWD--GNVEQTKTISNDWTAWGKNKSEIQDNV 439
D D+ D V K +Q + WD VE++ S+DW WG K++ ++ +
Sbjct: 1271 DSDKWGGWNDAAAGADTGVTKPANQGNSCWDVPATVEKS---SSDWGGWGTEKAKEKEKI 1327
Query: 440 AEKAEGECGSSEMWKTAVIQEGSSKSNAWKSNIEQRSDEDSWTSQKLKADVIQDSSKPSS 499
+E E + W + + +WK ++D +SW K + S S
Sbjct: 1328 SE----EPAQHDAWSVQGPKRATDGGASWKKQSSTQNDGNSWKENKGRG------SNGGS 1377
Query: 500 WGAKPKSNDSSNWGRNKDEIQDVVSRRAEDDSWSSKKQLSSDATQEDSSKFSFWGGNKDT 559
W + + +WGR DE ++ + ++ SW + +++DA +S WG T
Sbjct: 1378 W--EKDNAQKGSWGRGNDEAEN--NNDVQNKSWET---VAADA---HASTEKSWGNV--T 1425
Query: 560 TKPKSNDWSSWGGNRDGIQDGGSKRAQDDSWSS------QKDVTRE--------SSSKVD 605
P N WS+ ++ +G S Q DSW K + ++ +S
Sbjct: 1426 ASPSDNAWSAAPVSQG---NGSSDTKQSDSWDGWKSAGVDKAINKDKESLGNVPASPSFS 1482
Query: 606 AWGAN-----NEASNPKSND----WSAWGKNKDGTQDGGSERAQDDSSSLGKWKAESQVE 656
AW A+ NE S+ K +D W + G +K +D S S S W A + V
Sbjct: 1483 AWNASPVSQGNERSDAKQSDSWDGWKSAGVDKAINKDKESLGNVPASPSFSAWNA-APVS 1541
Query: 657 ADTVQEDSSKSKAWE----RNSDNVKVGNSSWGK-PKFPETQAWD--PQKETNQGAGSR- 708
+ D+ +S +W+ D+ SWG P P AW+ P + N+ + ++
Sbjct: 1542 QGNERLDAKQSDSWDGWKSAGVDDSVKDKESWGNVPASPSDSAWNAAPVSQGNESSDAKQ 1601
Query: 709 -----GWDSQIASANSDSDRNFQWGK----------------QGRESFK----------- 736
GW S A+++ D+ WG QG + +
Sbjct: 1602 SDSWDGWKSAGVDASTNKDKE-SWGNVPASPSDSAWNAAPVSQGDDVWNSAEANESRNKD 1660
Query: 737 -KSQGWGSNAGDMK-NKNRPGRAPGPRLDMYSSEEQDILKDIEPIVQSIRRIMQ 788
KS GWG+ G+ + +N P +EE+ IL +IE V SIR+I +
Sbjct: 1661 WKSDGWGARGGNWRGQRNNP------------AEEEKILGEIETTVLSIRKIFR 1702
>K3Y4N1_SETIT (tr|K3Y4N1) DNA-directed RNA polymerase OS=Setaria italica
GN=Si009169m.g PE=3 SV=1
Length = 1546
Score = 265 bits (676), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 135/317 (42%), Positives = 199/317 (62%), Gaps = 16/317 (5%)
Query: 2 LEELKINMAEVFQRCQEKLRSLNRK-RKYYQTLKSTELFFSESCASPN-------FSSPC 53
L ++I + Q+CQE + +K R+ Q K+TE+ SE C C
Sbjct: 908 LNRMEITTEHILQKCQEVISKHEKKSRQMRQIWKTTEMISSEYCLYDQDIGDEEALQVSC 967
Query: 54 VTFISLDGD---GLDKT--TEILADVICPVLLGTIIQGDPRISSANITWINPDSNAWVRN 108
+ + LD GL ++ ++ + I P+LL TII+GDPR+ A + WI P+S WV+N
Sbjct: 968 LE-VFLDTSTTTGLSESNVAHLMTNTIFPILLDTIIKGDPRVQDAKVIWIEPESTCWVQN 1026
Query: 109 PSKSSNGELALDIILEEAAVKQSGDAWRIVLDSCLPVLNLIDTRRSIPYAIKQVQELLGI 168
S GELAL+I +E+ AV +SG W + +D+C+PV++LIDT+RS+PY I++V ++ GI
Sbjct: 1027 SSAEQKGELALEITVEKVAVAESGGTWGVAMDACVPVMDLIDTKRSMPYNIQEVHKVFGI 1086
Query: 169 SCTFDQAIQRLAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVP 228
SC FD+ Q L+ +V MV K V+ +HL +ASSMTC G+L GFN GYKA + L IQ P
Sbjct: 1087 SCVFDRVTQHLSKAVGMVTKSVITDHLTTVASSMTCTGSLHGFNRSGYKATFQSLKIQAP 1146
Query: 229 FTDATLFTPKKCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSRFDVLW-DAKERKSNE 287
FT+ATL P +CF ++AEK +D L+S+V++CSWG A+GTGS F + W D + S+E
Sbjct: 1147 FTEATLSRPMQCFRKSAEKVDSDQLASVVSTCSWGNHAAIGTGSAFKIHWKDEIQSSSDE 1206
Query: 288 -LEGMDVYNFLHMVKSL 303
L G +Y+FL +V ++
Sbjct: 1207 ILGGYGLYDFLALVGTI 1223
>N1R5E0_AEGTA (tr|N1R5E0) Uncharacterized protein OS=Aegilops tauschii
GN=F775_00054 PE=4 SV=1
Length = 645
Score = 264 bits (674), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 173/459 (37%), Positives = 241/459 (52%), Gaps = 85/459 (18%)
Query: 75 ICPVLLGTIIQGDPRISSANITWINPDSNAWVRNPSKSSNGELALDIILEEAAVKQSGDA 134
+CP GDPRI A I W+ D+ WV++ K + +++GDA
Sbjct: 17 LCPHACYLAEYGDPRIQDAKIMWVGSDATPWVKDTRKEA---------------RKNGDA 61
Query: 135 WRIVLDSCLPVLNLIDTRRSIPYAIKQVQELLGISCTFDQAIQRLAASVKMVAKGVLREH 194
WRI +D+C+PV+NLIDTRRSIP+ I+QVQELLGISC+FDQ +Q L+ ++K VAKG+L++H
Sbjct: 62 WRIAMDACIPVINLIDTRRSIPHGIQQVQELLGISCSFDQVVQCLSRTMKTVAKGILKDH 121
Query: 195 LILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDATLFTPKKCFERAAEKCHTDSLS 254
LIL+A+SMTC GNL GF+ GGY A R L +Q PFT++T FTP KC E+AAEKCHTDSL
Sbjct: 122 LILVANSMTCTGNLNGFHKGGYNATLRSLKVQAPFTEST-FTPVKCLEKAAEKCHTDSLG 180
Query: 255 SIVASCSWGKPVAVGTGSRFDVLWDAKERKSNELEGMDVYNFLHMVKSLINGEEENDACX 314
+V+SCSWGK A+GTGS F +LW+ + ++++ + D Y FL V L+ +D C
Sbjct: 181 CVVSSCSWGKNAALGTGSSFQILWNENQVRTDQEK--DAYTFLDDVDYLVEDNTMDDIC- 237
Query: 315 XXXXXXXXXXXNADYSLSPQ--HTSGVDAVFEETFEAMNGPESNGWGATTDRTETKSTQW 372
LSP+ T G+ FE+ E E N W E +T
Sbjct: 238 ----------------LSPEWDGTHGM-PTFEDNPEQQITEEGNSW-------ENDTTAN 273
Query: 373 SAWESNKAETKDGGSQR---VHEDSWTSRDVMKDDSQ------MTNAWDGNVEQTKTISN 423
++WE N D G+ + +D S +S ++W +T T N
Sbjct: 274 ASWEQNAIAGNDSGNAQNVDAQDDPLGSVAAKAQNSTAQHMDGTNDSWGCVAAKTCTAGN 333
Query: 424 DWTAWGKNKSEIQDNVAEKAEGECGSSEMWKTAVIQEGSSKSNAWKSNIEQRSDEDSWTS 483
D +WG +VA KA+ E W S NAW + + E+S
Sbjct: 334 D--SWG--------SVAAKAQTSTAQQESWGNVA---ASPSDNAWGAAPISQGHENS--- 377
Query: 484 QKLKADVIQDSSKPSSWG--AKPKSNDSS--NW--GRNK 516
DS +P+SW + +++DSS NW G NK
Sbjct: 378 ---------DSKQPASWDGWSSAQADDSSADNWKTGNNK 407
>J3L864_ORYBR (tr|J3L864) DNA-directed RNA polymerase OS=Oryza brachyantha
GN=OB01G54200 PE=3 SV=1
Length = 1576
Score = 259 bits (661), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 127/312 (40%), Positives = 202/312 (64%), Gaps = 11/312 (3%)
Query: 2 LEELKINMAEVFQRCQEKLRSLNRKR-KYYQTLKSTELFFSESCASPN------FSSPCV 54
L +++ MA+V +CQE R +KR + +TL++ SE + C+
Sbjct: 927 LNQMQTTMADVLHKCQEVFRKNIKKRGQMRETLRTVTFVPSERVCDQHTYNDRELQVSCL 986
Query: 55 -TFISLD-GDGLDKTTEILADVICPVLLGTIIQGDPRISSANITWINPDSNAWVRNPSKS 112
F++ + ++ ++ + I PV+L T+I+GDPR+ AN+ I P+S WV++
Sbjct: 987 QLFLTAKISESTERVVHLMTNAIFPVVLDTVIKGDPRVEEANLVRIEPESTCWVQSFGAE 1046
Query: 113 SNGELALDIILEEAAVKQSGDAWRIVLDSCLPVLNLIDTRRSIPYAIKQVQELLGISCTF 172
G++AL+I +E+A ++G+AW + +D+C+PV++LIDT RS+PY I+QV+++ GIS TF
Sbjct: 1047 QKGKVALEITVEKAVAAKTGNAWGVAMDACIPVIDLIDTTRSVPYDIQQVRQVFGISSTF 1106
Query: 173 DQAIQRLAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDA 232
++ Q L+ +V MV K VL++HL +ASSMTC G+L GFN+ GYKA ++ L +Q PF DA
Sbjct: 1107 EKVTQHLSKAVGMVTKSVLQDHLTTVASSMTCTGDLHGFNSSGYKATSQSLKVQAPFMDA 1166
Query: 233 TLFTPKKCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSRFDVLWDAKERKSNE--LEG 290
TL T +CFE+AA K ++D L SIV+SCSWG A+GTGS F++LW+ + S++ L G
Sbjct: 1167 TLSTSTRCFEKAAAKAYSDQLGSIVSSCSWGNNAAIGTGSAFEILWNNENMSSSKSILGG 1226
Query: 291 MDVYNFLHMVKS 302
+Y+FL V++
Sbjct: 1227 YGLYDFLEAVET 1238
>M0XPZ5_HORVD (tr|M0XPZ5) DNA-directed RNA polymerase OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 1281
Score = 256 bits (654), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 127/314 (40%), Positives = 184/314 (58%), Gaps = 13/314 (4%)
Query: 2 LEELKINMAEVFQRCQEKLRSLNRKRKYYQTLKSTELFFSESC-----ASPNFSSPCVTF 56
L+E+ I+M ++ Q+CQE++ +K+ L S C A C+ F
Sbjct: 563 LDEMNISMEDILQKCQEEIYRCGKKKGQANQLMKRVAVISSECMCYQDADDKERVSCLQF 622
Query: 57 ISLDG------DGLDKTTEILADVICPVLLGTIIQGDPRISSANITWINPDSNAWVRNPS 110
+ + + +++A+ I P+LL T+I+GD R+ NI W+ P WV+N
Sbjct: 623 FLTESVTTKMSESSARVVQMMANTISPILLDTMIKGDKRVQEVNIVWVEPQETCWVQNSG 682
Query: 111 KSSNGELALDIILEEAAVKQSGDAWRIVLDSCLPVLNLIDTRRSIPYAIKQVQELLGISC 170
K GELAL + +++ + +SGD W +D+C+PV++LIDT RS+PY+I+QVQ++ GIS
Sbjct: 683 KEQKGELALVVTMDKNSTGESGDVWGTAMDACIPVMDLIDTTRSVPYSIQQVQQVFGISS 742
Query: 171 TFDQAIQRLAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFT 230
F + Q L+ +V MV K VL EH +ASSMTC GNL GFN+ GYKA + L IQ PF
Sbjct: 743 AFGRVTQHLSKAVGMVTKSVLEEHRTTVASSMTCTGNLHGFNSYGYKATFKSLKIQAPFM 802
Query: 231 DATLFTPKKCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSRFDVLW-DAKERKSNE-L 288
ATL P +CFE AEK ++D L S+V++CSWG P +GTGS F + W D NE L
Sbjct: 803 KATLARPLQCFEEGAEKVYSDQLDSVVSTCSWGNPAPIGTGSAFKIHWNDGNTSAGNENL 862
Query: 289 EGMDVYNFLHMVKS 302
G +Y FL V++
Sbjct: 863 GGYGLYEFLAEVEA 876
>M8C0F8_AEGTA (tr|M8C0F8) DNA-directed RNA polymerase II subunit RPB1 OS=Aegilops
tauschii GN=F775_23577 PE=4 SV=1
Length = 1600
Score = 249 bits (636), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 128/312 (41%), Positives = 184/312 (58%), Gaps = 11/312 (3%)
Query: 2 LEELKINMAEVFQRCQEKLRSLNRKRKYYQTLKSTELFFSES-C---ASPNFSSPCVTF- 56
L+E+ I+M + Q+CQ+++ +K+ L + SE C A C+ F
Sbjct: 891 LDEMNISMQGILQKCQKEIYRCGKKKGQVNQLMKRVVISSEYMCYQDADDEEQVSCLQFF 950
Query: 57 ----ISLDGDGLDKTTEILADVICPVLLGTIIQGDPRISSANITWINPDSNAWVRNPSKS 112
++ + + +++A+ I P+LL TII+GDPR+ NI W P WV+N
Sbjct: 951 LTKSVTTQSESSARVVQLMANTISPILLDTIIKGDPRVQEVNIIWAEPQDTCWVQNSGTE 1010
Query: 113 SNGELALDIILEEAAVKQSGDAWRIVLDSCLPVLNLIDTRRSIPYAIKQVQELLGISCTF 172
GELAL I +++ + +SGD W +D+C+PV++LIDT RS+PY+I++V+E GIS F
Sbjct: 1011 QKGELALVITMDKDSTGESGDVWGTAMDACIPVMDLIDTTRSVPYSIQRVREGFGISSAF 1070
Query: 173 DQAIQRLAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDA 232
+ Q L+ +V MV K VL EHL +ASSMTC GNL GFN+ GYKA + L IQ PF A
Sbjct: 1071 GRVTQHLSKAVGMVTKSVLEEHLTTVASSMTCTGNLHGFNSYGYKATFKALKIQAPFMKA 1130
Query: 233 TLFTPKKCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSRFDVLW-DAKERKSNE-LEG 290
T P +CFE AEK ++D L S+V++CSWG P +GTGS F + W D NE L G
Sbjct: 1131 TRARPLQCFEEGAEKVYSDQLDSVVSTCSWGNPAPIGTGSAFKIHWNDGNTSAGNENLGG 1190
Query: 291 MDVYNFLHMVKS 302
+Y FL V++
Sbjct: 1191 YGLYEFLTEVET 1202
>C5XJ93_SORBI (tr|C5XJ93) DNA-directed RNA polymerase (Fragment) OS=Sorghum bicolor
GN=Sb03g046922 PE=3 SV=1
Length = 1571
Score = 241 bits (616), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 129/335 (38%), Positives = 195/335 (58%), Gaps = 27/335 (8%)
Query: 5 LKINMAEVFQRCQEKL-RSLNRKRKYYQTLKSTELFFSESCASPN-------FSSPCV-T 55
++I M + Q CQ+ + + + + R+ Q LK+TE+ SE C C+
Sbjct: 910 MEITMGNILQTCQKNVNKHVMKNRQLMQILKTTEIISSEYCLCGQDIGDERALQVSCLQC 969
Query: 56 FISLDGDGLD---KTTEILADVICPVLLGTIIQGDPRISSANITWINPDSNAWVRNPSKS 112
FI + +++ + I P+LL T+I+GDP++ A + W+ P WV+N S
Sbjct: 970 FIHASTTTVQPESNVIQMMTNTIFPILLDTVIKGDPQVQEAKLIWVEPKLTRWVKNSSAE 1029
Query: 113 SNGELALDIILEEAAVKQSGDAWRIVLDSCLPVLNLIDTRRSIPYAIKQVQELLGISCTF 172
GELA++I +E+ A ++G W +V+D+C+PV++LIDT RS P I++VQ++ GIS F
Sbjct: 1030 QKGELAVEITVEKIAAAENGGTWGVVMDACVPVMDLIDTTRSAPCNIQEVQKVFGISSVF 1089
Query: 173 DQAI-------------QRLAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKAL 219
D+ + Q L+ +V MV K VL EHLI +ASSMTC G+L GFN G KA
Sbjct: 1090 DRVVQFLMFCPPLGSFFQHLSKAVGMVTKSVLMEHLITVASSMTCTGSLHGFNRSGSKAT 1149
Query: 220 ARQLNIQVPFTDATLFTPKKCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSRFDVLW- 278
+ L +Q PFT+ATL P +CF ++AEK +D L S+V++CSWG A+GTGS F + W
Sbjct: 1150 FQSLKVQAPFTEATLSRPMQCFRKSAEKVDSDQLDSVVSTCSWGNHAAIGTGSAFKIHWN 1209
Query: 279 DAKERKSNE-LEGMDVYNFLHMVKSLINGEEENDA 312
D + SNE L ++Y+FL V + E++ DA
Sbjct: 1210 DENQSASNEILREYNLYDFLEAVGRIGATEQKTDA 1244
>Q5JJW0_ORYSJ (tr|Q5JJW0) DNA-directed RNA polymerase OS=Oryza sativa subsp.
japonica GN=P0458E05.13 PE=3 SV=1
Length = 1568
Score = 232 bits (592), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 124/344 (36%), Positives = 195/344 (56%), Gaps = 44/344 (12%)
Query: 2 LEELKINMAEVFQRCQEKLRS-LNRKRKYYQTLKSTELFFSESCASPN------FSSPCV 54
L +++ M V +CQE R+ + +K + LK+ S S + F C+
Sbjct: 896 LNQIETIMDSVLHKCQETFRNNIKKKGSMREILKTVTFISSTSLCDQHTDDDKKFQVSCL 955
Query: 55 TFISLDG-------DGLDKTTEILADVICPVLLGTIIQGDPRISSANITWINPDSNAWVR 107
F L G + ++ + + + I P++L T+I+GDPR+ AN+ I P+S WV+
Sbjct: 956 QFF-LPGSITKNISESTERVIDFMTNAIFPIILDTVIKGDPRVEEANLVRIEPESTFWVQ 1014
Query: 108 NPSKSSNGELALDIILEEAAVKQSGDAWRIVLDSCLPVLNLIDTRRSIPYAIKQVQELLG 167
+ GE AL+I +EEAA +SG+AW + +++C+PV++LIDT RS+PY I+QV+++ G
Sbjct: 1015 SSGAEQKGEAALEITVEEAAAAESGNAWGVAMNACIPVMDLIDTTRSMPYDIQQVRQVFG 1074
Query: 168 ISCTFDQA---------------------------IQRLAASVKMVAKGVLREHLILLAS 200
IS F++ Q L+ SV M+ K VL+EHL +AS
Sbjct: 1075 ISSAFEKVTQVQLFPFLLLAEIQVTSAETLLVLCSFQYLSKSVGMITKSVLQEHLTTVAS 1134
Query: 201 SMTCGGNLVGFNTGGYKALARQLNIQVPFTDATLFTPKKCFERAAEKCHTDSLSSIVASC 260
SMTC G+L GFN GYKA + L +Q PF +ATL +CFE+AA K ++D L ++V++C
Sbjct: 1135 SMTCTGDLHGFNNSGYKATCQSLKVQAPFMEATLSRSIQCFEKAAAKAYSDQLGNVVSAC 1194
Query: 261 SWGKPVAVGTGSRFDVLWDAKERKSNE--LEGMDVYNFLHMVKS 302
SWG +GTGS F++LW+ + S++ L G +Y+FL V++
Sbjct: 1195 SWGNNAEIGTGSAFEILWNDENMSSSKSILGGYGLYDFLEAVET 1238
>B9EWM0_ORYSJ (tr|B9EWM0) DNA-directed RNA polymerase OS=Oryza sativa subsp.
japonica GN=OsJ_04874 PE=3 SV=1
Length = 1528
Score = 228 bits (580), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 120/317 (37%), Positives = 187/317 (58%), Gaps = 30/317 (9%)
Query: 2 LEELKINMAEVFQRCQEKLRS-LNRKRKYYQTLKSTELFFSESCASPN------FSSPCV 54
L +++ M V +CQE R+ + +K + LK+ S S + F C+
Sbjct: 896 LNQIETIMDSVLHKCQETFRNNIKKKGSMREILKTVTFISSTSLCDQHTDDDKKFQVSCL 955
Query: 55 TFISLDG-------DGLDKTTEILADVICPVLLGTIIQGDPRISSANITWINPDSNAWVR 107
F L G + ++ + + + I P++L T+I+GDPR+ AN+ I P+S WV+
Sbjct: 956 QFF-LPGSITKNISESTERVIDFMTNAIFPIILDTVIKGDPRVEEANLVRIEPESTFWVQ 1014
Query: 108 NPSKSSNGELALDIILEEAAVKQSGDAWRIVLDSCLPVLNLIDTRRSIPYAIKQVQELLG 167
+ GE AL+I +EEAA +SG+AW + +++C+PV++LIDT RS+PY I+QV+
Sbjct: 1015 SSGAEQKGEAALEITVEEAAAAESGNAWGVAMNACIPVMDLIDTTRSMPYDIQQVR---- 1070
Query: 168 ISCTFDQAIQRLAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQV 227
Q L+ SV M+ K VL+EHL +ASSMTC G+L GFN GYKA + L +Q
Sbjct: 1071 ---------QYLSKSVGMITKSVLQEHLTTVASSMTCTGDLHGFNNSGYKATCQSLKVQA 1121
Query: 228 PFTDATLFTPKKCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSRFDVLWDAKERKSNE 287
PF +ATL +CFE+AA K ++D L ++V++CSWG +GTGS F++LW+ + S++
Sbjct: 1122 PFMEATLSRSIQCFEKAAAKAYSDQLGNVVSACSWGNNAEIGTGSAFEILWNDENMSSSK 1181
Query: 288 --LEGMDVYNFLHMVKS 302
L G +Y+FL V++
Sbjct: 1182 SILGGYGLYDFLEAVET 1198
>R7WAM9_AEGTA (tr|R7WAM9) DNA-directed RNA polymerase subunit A OS=Aegilops
tauschii GN=F775_23143 PE=4 SV=1
Length = 887
Score = 221 bits (563), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 116/304 (38%), Positives = 171/304 (56%), Gaps = 46/304 (15%)
Query: 2 LEELKINMAEVFQRCQEKLRSLNRKR-KYYQTLKSTELFFSESCASPNFSSPCVTFISLD 60
L+E+ I+M ++ Q+CQE + +K+ + YQ LK L SE
Sbjct: 446 LDEMNISMEDIIQKCQEAICECRKKKGQVYQVLKRIVLSSSEC----------------- 488
Query: 61 GDGLDKTTEILADVICPVLLGTIIQGDPRISSANITWINPDSNAWVRNPSKSSNGELALD 120
DPR+ NI W+ P + WV+N GELAL
Sbjct: 489 --------------------------DPRVQEVNIIWVEPQATCWVQNSGTEQKGELALI 522
Query: 121 IILEEAAVKQSGDAWRIVLDSCLPVLNLIDTRRSIPYAIKQVQELLGISCTFDQAIQRLA 180
I +++A+ +SGDAW +D+C+PV++LIDT RS+PY+I+QVQ+++GIS F + Q+L+
Sbjct: 523 ITVDKASTGESGDAWGAAMDACIPVMDLIDTTRSMPYSIQQVQQVIGISSAFGRVTQQLS 582
Query: 181 ASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDATLFTPKKC 240
+V MV K VL+EH+ +ASSMTC L GFN+ GY A + L IQ PF ATL P +C
Sbjct: 583 KAVGMVTKSVLKEHMTTVASSMTCTCKLHGFNSYGYMATFQSLKIQAPFMKATLSRPMQC 642
Query: 241 FERAAEKCHTDSLSSIVASCSWGKPVAVGTGSRFDVLWDAKERK--SNELEGMDVYNFLH 298
FE A+K ++D L+S+V++ SWG P +GTGS F + W+ + S +L G +Y FL
Sbjct: 643 FEEGAKKVYSDQLNSVVSTYSWGIPAPIGTGSAFKIHWNDENMSAGSGDLGGYGLYEFLT 702
Query: 299 MVKS 302
V++
Sbjct: 703 AVET 706
>B9GM05_POPTR (tr|B9GM05) Predicted protein OS=Populus trichocarpa
GN=POPTRDRAFT_547816 PE=4 SV=1
Length = 779
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 133/282 (47%), Positives = 171/282 (60%), Gaps = 21/282 (7%)
Query: 185 MVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDATLFTPKKCFERA 244
MVAKGVL+EHLILL +SMTC G+L+GF TGGYK L+R L+IQVPFT+ATLFTP+KCFE+A
Sbjct: 1 MVAKGVLKEHLILLGNSMTCAGSLIGFYTGGYKTLSRSLDIQVPFTEATLFTPRKCFEKA 60
Query: 245 AEKCHTDSLSSIVASCSWGKPVAVGTGSRFDVLWDAKERKSNELEGMDVYNFLHMVKSLI 304
AEKCHTD LSSIVASCSWGK V VGTGSRFDVLWD KE N G+D Y+FL+MV+S
Sbjct: 61 AEKCHTDYLSSIVASCSWGKHVTVGTGSRFDVLWDTKEACLNPEGGIDAYSFLNMVRSTA 120
Query: 305 NGEEENDACXXXXXXXXXXXXNADYSLSPQHTSGVD-AVFEETFEAM----NGPESNGWG 359
GEE AC + D++LSP+H S D FE++ E N P + WG
Sbjct: 121 GGEESVTAC-LGAEVDDLILEDEDWNLSPEHHSSSDKPTFEDSAEFQDFLGNQPAESNWG 179
Query: 360 ATTDRTETKSTQWSA--WESNKAETKDGGSQR---VHEDSWTSRDVMKDDS---QMTNAW 411
+ K WSA W+ +K ++ G ++ + S + DV D + ++ ++W
Sbjct: 180 KA---SSLKDGSWSAGNWDVDKNDS--AGKEKPWSLGMSSAETNDVGWDTAATRKINSSW 234
Query: 412 DGNVEQTKTISNDWTAWGKNKSEIQDNVAEKAEGECGSSEMW 453
N E T SN + W KSE + A K + + S W
Sbjct: 235 --NSENDVTQSNSLSGWATKKSETHNGFATKVQEKPARSNDW 274
>B8A9M1_ORYSI (tr|B8A9M1) DNA-directed RNA polymerase OS=Oryza sativa subsp. indica
GN=OsI_05331 PE=3 SV=1
Length = 1465
Score = 219 bits (557), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 103/240 (42%), Positives = 159/240 (66%), Gaps = 15/240 (6%)
Query: 65 DKTTEILADVICPVLLGTIIQGDPRISSANITWINPDSNAWVRNPSKSSNGELALDIILE 124
++ + + + I P++L T+I+GDPR+ AN+ I P+S WV++ GE+AL+I +E
Sbjct: 908 ERVIDFMTNAIFPIILDTVIKGDPRVEEANLVRIEPESTFWVQSSGAEQKGEVALEITVE 967
Query: 125 EAAVKQSGDAWRIVLDSCLPVLNLIDTRRSIPYAIKQVQELLGISCTFDQAIQRLAASVK 184
+AA +SG+AW + +D+C+PV++LIDT RS+PY I+QV+ Q L+ SV
Sbjct: 968 KAAAAESGNAWGVAMDACIPVMDLIDTTRSMPYDIQQVR-------------QYLSKSVG 1014
Query: 185 MVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDATLFTPKKCFERA 244
M+ K VL+EHL +ASSMTC G+L GFN GYKA + L +Q PF +ATL +CFE+A
Sbjct: 1015 MITKSVLQEHLTTVASSMTCTGDLHGFNNSGYKATCQSLKVQAPFMEATLSRSIQCFEKA 1074
Query: 245 AEKCHTDSLSSIVASCSWGKPVAVGTGSRFDVLWDAKERKSNE--LEGMDVYNFLHMVKS 302
A K ++D L ++V++CSWG +GTGS F++LW+ + S++ L G +Y+FL V++
Sbjct: 1075 AAKAYSDQLGNVVSACSWGNNTEIGTGSAFEILWNDENMSSSKSILGGYGLYDFLEAVET 1134
>G7LG21_MEDTR (tr|G7LG21) Protein DCL OS=Medicago truncatula GN=MTR_8g039170 PE=4
SV=1
Length = 481
Score = 194 bits (493), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 135/325 (41%), Positives = 191/325 (58%), Gaps = 45/325 (13%)
Query: 479 DSWTSQKLKA-DVIQDSSKPSSWGAKPKSNDSSNWGRNKDEIQDVVSRRAEDDSWSSKK- 536
++W + KLK+ D+ +DS+ W A WG +K E+ + S + +D SW+S+K
Sbjct: 18 NAWGATKLKSNDIQEDSTNSGGWKA---------WGSSKPEVHEGESTKVQD-SWNSQKW 67
Query: 537 QLSSDATQEDSSKFSFWGGNKDTTKPKSND-WSSWGGNRDGIQDGGSKRAQDDSWSSQKD 595
+ + D +Q+DS K S WG TKPKSND SSWG +D I ++ ++W + +
Sbjct: 68 KAAEDVSQKDSQKSSAWGA----TKPKSNDNRSSWGQKKDEIHVMPEDSSRSNAWEQKPE 123
Query: 596 VTRESSSKVDAWGANNEASNPKSNDWSAWGKNK-------DGTQDGGSERAQDDSSSLGK 648
+ D+W A +N S+WGK K D + + + +S
Sbjct: 124 NVK------DSWVAKVPVAN------SSWGKAKSPENRPWDSKNEPNNSFGKPNSQENEP 171
Query: 649 WKAESQVEADTVQEDSSKSKAWERNSDNVKVGNSSWGKPKFPETQAWDPQKETNQGAGSR 708
W ++++ ++ + S +S+ W D+ NSSWGKPK E WD + E+NQ AGSR
Sbjct: 172 WDSKNESDSSWGKPKSQESQPW----DSKNESNSSWGKPKSQENHPWDSKNESNQTAGSR 227
Query: 709 GWDSQIASANSDSDRNFQWGKQGRESFKK-----SQGWGSNAGDMKNKNRPGRAPGPRLD 763
GWDSQ+ASANS+SD++FQWGKQGR+SFKK SQ G NAGD KN++RP R PG R +
Sbjct: 228 GWDSQVASANSESDKSFQWGKQGRDSFKKNRFEGSQSGGPNAGDWKNRSRPVRPPGQRFE 287
Query: 764 MYSSEEQDILKDIEPIVQSIRRIMQ 788
+Y+ EEQDI+KDIEPIVQSIRRIMQ
Sbjct: 288 LYTPEEQDIMKDIEPIVQSIRRIMQ 312
>M0WRB9_HORVD (tr|M0WRB9) DNA-directed RNA polymerase OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 1139
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 81/189 (42%), Positives = 120/189 (63%), Gaps = 17/189 (8%)
Query: 2 LEELKINMAEVFQRCQEKL-RSLNRKRKYYQTLKSTELFFSESCASPNFSS-------PC 53
LE++ +++ E+ +CQE + N+K K F + C+ F+ PC
Sbjct: 955 LEKINVSIDEILHKCQEVSGKHANKKGTLGHLFKKIT-FSTCDCS---FTQKPGDEKVPC 1010
Query: 54 VTF-----ISLDGDGLDKTTEILADVICPVLLGTIIQGDPRISSANITWINPDSNAWVRN 108
+ F I + D ++K +LAD +C VLL II+GDPR+ A ITW+ D+ +WV++
Sbjct: 1011 LQFSFSEDIPMLSDSVEKAVNVLADSLCSVLLEIIIKGDPRVQEAKITWVGSDATSWVKH 1070
Query: 109 PSKSSNGELALDIILEEAAVKQSGDAWRIVLDSCLPVLNLIDTRRSIPYAIKQVQELLGI 168
K S GE A++II+E+ Q+GDAWRI +D+C+PV+NLIDT+RSIPY I+QV+ELLGI
Sbjct: 1071 TKKISKGEPAVEIIVEKKEAMQNGDAWRIAMDACIPVMNLIDTQRSIPYGIQQVRELLGI 1130
Query: 169 SCTFDQAIQ 177
SC+FDQ +Q
Sbjct: 1131 SCSFDQVVQ 1139
>M0WRB8_HORVD (tr|M0WRB8) DNA-directed RNA polymerase OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 925
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 81/189 (42%), Positives = 120/189 (63%), Gaps = 17/189 (8%)
Query: 2 LEELKINMAEVFQRCQEKL-RSLNRKRKYYQTLKSTELFFSESCASPNFSS-------PC 53
LE++ +++ E+ +CQE + N+K K F + C+ F+ PC
Sbjct: 741 LEKINVSIDEILHKCQEVSGKHANKKGTLGHLFKKIT-FSTCDCS---FTQKPGDEKVPC 796
Query: 54 VTF-----ISLDGDGLDKTTEILADVICPVLLGTIIQGDPRISSANITWINPDSNAWVRN 108
+ F I + D ++K +LAD +C VLL II+GDPR+ A ITW+ D+ +WV++
Sbjct: 797 LQFSFSEDIPMLSDSVEKAVNVLADSLCSVLLEIIIKGDPRVQEAKITWVGSDATSWVKH 856
Query: 109 PSKSSNGELALDIILEEAAVKQSGDAWRIVLDSCLPVLNLIDTRRSIPYAIKQVQELLGI 168
K S GE A++II+E+ Q+GDAWRI +D+C+PV+NLIDT+RSIPY I+QV+ELLGI
Sbjct: 857 TKKISKGEPAVEIIVEKKEAMQNGDAWRIAMDACIPVMNLIDTQRSIPYGIQQVRELLGI 916
Query: 169 SCTFDQAIQ 177
SC+FDQ +Q
Sbjct: 917 SCSFDQVVQ 925
>M0V9F4_HORVD (tr|M0V9F4) Uncharacterized protein OS=Hordeum vulgare var.
distichum PE=4 SV=1
Length = 96
Score = 147 bits (370), Expect = 2e-32, Method: Composition-based stats.
Identities = 65/96 (67%), Positives = 81/96 (84%)
Query: 183 VKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDATLFTPKKCFE 242
+K VAKG+L++HL+L+A+SMTC GNL GF+ GGYKA R L +QVPFT+ATL TP KCFE
Sbjct: 1 MKTVAKGILKDHLVLVANSMTCTGNLNGFHNGGYKATFRSLKVQVPFTEATLLTPMKCFE 60
Query: 243 RAAEKCHTDSLSSIVASCSWGKPVAVGTGSRFDVLW 278
+AAEKCH+DSL S+V+SCSWGK A+GTGS F +LW
Sbjct: 61 KAAEKCHSDSLGSVVSSCSWGKHAALGTGSSFQILW 96
>C5XUR5_SORBI (tr|C5XUR5) Putative uncharacterized protein Sb04g003750 OS=Sorghum
bicolor GN=Sb04g003750 PE=4 SV=1
Length = 739
Score = 139 bits (351), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 73/160 (45%), Positives = 97/160 (60%), Gaps = 7/160 (4%)
Query: 202 MTCGGNLVGFNTGGYKALARQLNIQVPFTDATLFTPKKCFERAAEKCHTDSLSSIVASCS 261
MTC G+L+GFN GYKA R L +QVPFT++TLFTP KCFE+AAEKC +DSL +V+S S
Sbjct: 1 MTCTGSLIGFNIAGYKATFRSLKVQVPFTESTLFTPMKCFEKAAEKCDSDSLGCVVSSSS 60
Query: 262 WGKPVAVGTGSRFDVLWDAKERKSNELEGMDVYNFLHMVKSLINGEEENDACXXXXXXXX 321
WGK AVGTGS F +LW+ + KSN+ G +Y+FL +V++ ++E
Sbjct: 61 WGKHAAVGTGSSFQILWNENQLKSNKDYGDGLYDFLALVRT----DQEKTGYMFLDDVDY 116
Query: 322 XXXXNA--DYSLSPQHTSGV-DAVFEETFEAMNGPESNGW 358
NA D LSP+ V FE+ FE N + + W
Sbjct: 117 LLEENAIDDMCLSPEPDGTVGKPTFEDNFEEQNIQKGSSW 156
>Q1L5X8_9BRYO (tr|Q1L5X8) DNA-directed RNA polymerase (Fragment) OS=Sphagnum sp.
JL-2005 GN=RPD1 PE=2 SV=1
Length = 969
Score = 135 bits (341), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 92/322 (28%), Positives = 159/322 (49%), Gaps = 35/322 (10%)
Query: 1 MLEELKINMAEVFQRCQEK---LRSLNRKRKYYQTLKSTELFFSESCASPNFSSPCVTFI 57
+L++ ++ M ++ + Q K LR + +K Q +FF S C+ F
Sbjct: 568 VLQQHELTMTKIVGKLQRKFSILRPITKKNPLGQ------IFFCHSEFCDVSRGLCIHFS 621
Query: 58 S---------LDGD----GLDKTTEILADVICPVLLGTIIQGDPRISSANI-----TWI- 98
D D L + + + D I P LL I+GD R+ S I TW
Sbjct: 622 PKLPKKMQNQYDDDEYSHSLLELMKKMRDRILPALLECTIKGDERLESVKIVQEDCTWPS 681
Query: 99 -NPDSNAWVRNPSKSSNGELALDIILEEAAVKQS--GDAWRIVLDSCLPVLNLIDTRRSI 155
+P + VR P + EL L+++ + ++S AW V+++C+PV+ +D +RS+
Sbjct: 682 WHPKTAGVVR-PGEE---ELVLEVVATSSLHQKSKRNMAWNAVMEACVPVMEEVDWQRSM 737
Query: 156 PYAIKQVQELLGISCTFDQAIQRLAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGG 215
PY+I++++ LGI + +QR+A +++ A REH+ L+ +MT G+ GF G
Sbjct: 738 PYSIQEMKHALGIEVAYQMVVQRVALALEETAPHTYREHIKLIGDTMTYSGDANGFTFSG 797
Query: 216 YKALARQLNIQVPFTDATLFTPKKCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSRFD 275
++ + + +I PFT+A P + F AA K DSL S++ SC WG+ +GTG++ +
Sbjct: 798 FRDMIKSAHISAPFTEAAYQKPIRNFLDAAAKGAMDSLESVMTSCVWGREAPLGTGTKIE 857
Query: 276 VLWDAKERKSNELEGMDVYNFL 297
+ W E+E D++ L
Sbjct: 858 LRWQPPHEDLQEVEEKDLHAIL 879
>M0V9F5_HORVD (tr|M0V9F5) Uncharacterized protein OS=Hordeum vulgare var.
distichum PE=4 SV=1
Length = 87
Score = 135 bits (340), Expect = 7e-29, Method: Composition-based stats.
Identities = 59/87 (67%), Positives = 74/87 (85%)
Query: 183 VKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDATLFTPKKCFE 242
+K VAKG+L++HL+L+A+SMTC GNL GF+ GGYKA R L +QVPFT+ATL TP KCFE
Sbjct: 1 MKTVAKGILKDHLVLVANSMTCTGNLNGFHNGGYKATFRSLKVQVPFTEATLLTPMKCFE 60
Query: 243 RAAEKCHTDSLSSIVASCSWGKPVAVG 269
+AAEKCH+DSL S+V+SCSWGK A+G
Sbjct: 61 KAAEKCHSDSLGSVVSSCSWGKHAALG 87
>Q1L5X9_MARPO (tr|Q1L5X9) DNA-directed RNA polymerase (Fragment) OS=Marchantia
polymorpha GN=RPD1 PE=2 SV=1
Length = 1008
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 113/214 (52%), Gaps = 9/214 (4%)
Query: 69 EILADVICPVLLGTIIQGDPRISSANITWINPDSNAWVR------NPSKSSNGELALDII 122
E+L + I P +L T+++G ++ S NI W + + V+ N KS GEL L++
Sbjct: 662 EVLQNFIIPEILKTVVKGSEKLQSVNILWEDATWSPPVKSEENDSNVMKSGRGELVLEVT 721
Query: 123 LEEAAVKQSGDAWRIVLDSCLPVLNLIDTRRSIPYAIKQVQELLGISCTFDQAIQRLAAS 182
++E + G WR V +SC+ ++ +D +RS PY+I++++ +LG+ D +QRL +
Sbjct: 722 VKELYSQSRGMPWRTVQESCIQFVDYVDWQRSSPYSIQEIKSVLGVDAARDVLLQRLELA 781
Query: 183 VKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDATLFTPKKCFE 242
+ +HL L+A M G + G + GY+ R L PFT P K F
Sbjct: 782 ---AGNSIGNKHLKLVADFMVYSGEVQGLTSYGYRDWMRSLKFSSPFTAGAFRAPIKHFL 838
Query: 243 RAAEKCHTDSLSSIVASCSWGKPVAVGTGSRFDV 276
A K T+ S ++AS +GK V +GTG+ FD+
Sbjct: 839 EAGRKGATERFSGVLASSVFGKKVPLGTGAVFDL 872
>I1NVI7_ORYGL (tr|I1NVI7) DNA-directed RNA polymerase OS=Oryza glaberrima PE=3 SV=1
Length = 1567
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 57/127 (44%), Positives = 85/127 (66%), Gaps = 2/127 (1%)
Query: 178 RLAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDATLFTP 237
+ + SV M+ K VL+EHL +ASSMTC +L GFN GYKA + L +Q PF +ATL
Sbjct: 1110 KFSKSVGMITKSVLQEHLTTVASSMTCTDDLHGFNNSGYKATCQSLKVQAPFMEATLSRS 1169
Query: 238 KKCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSRFDVLWDAKERKSNE--LEGMDVYN 295
+CFE+AA K ++D L ++V++CSWG +GTGS F++LW+ + S++ L G +Y+
Sbjct: 1170 IQCFEKAAAKAYSDQLGNVVSACSWGNNTEIGTGSAFEILWNDENMSSSKSILGGYGLYD 1229
Query: 296 FLHMVKS 302
FL V++
Sbjct: 1230 FLEAVET 1236
>Q1L5Y1_9MONI (tr|Q1L5Y1) DNA-directed RNA polymerase (Fragment) OS=Ceratopteris
thalictroides GN=RPD1 PE=2 SV=1
Length = 836
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/239 (29%), Positives = 123/239 (51%), Gaps = 8/239 (3%)
Query: 52 PCVTFI--SLDGDGLDKTTEILADVICPVLLGTIIQGDPRISSANITWINPDSNAWV--- 106
PC++F + +++ + D+I P ++ ++GD RI S +I S A
Sbjct: 596 PCLSFCLSTAQSPSIEEALSQIRDIIVPHIMKVSVRGDRRIKSVSILPSGILSEAVPFGS 655
Query: 107 -RNPSKSSNGELALDIILE--EAAVKQSGDAWRIVLDSCLPVLNLIDTRRSIPYAIKQVQ 163
+ + S+ E+AL++ + + +Q +AW +VLD C VL+ I+ RS+P I+ +
Sbjct: 656 QEHYRERSSTEIALEVTIHGKLKSTRQKTNAWNVVLDLCGSVLHKINWLRSMPSGIQAIA 715
Query: 164 ELLGISCTFDQAIQRLAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQL 223
+ GI + RL + + M K V H+I++ MT GN++G N G++ ++ L
Sbjct: 716 NVFGIEAAHNCIYHRLKSILSMFDKTVYDHHVIVITELMTHSGNVIGLNAAGFREISNSL 775
Query: 224 NIQVPFTDATLFTPKKCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSRFDVLWDAKE 282
+I P T + + K + AA + D LS +A+ WGK VGTG++FD+LW E
Sbjct: 776 HISAPITQSLFQSSIKHIQTAALRGKCDDLSGTLAAICWGKLAPVGTGAKFDILWRKVE 834
>M0XPZ7_HORVD (tr|M0XPZ7) Uncharacterized protein OS=Hordeum vulgare var.
distichum PE=4 SV=1
Length = 107
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/95 (55%), Positives = 65/95 (68%)
Query: 185 MVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDATLFTPKKCFERA 244
MV K VL EH +ASSMTC GNL GFN+ GYKA + L IQ PF ATL P +CFE
Sbjct: 1 MVTKSVLEEHRTTVASSMTCTGNLHGFNSYGYKATFKSLKIQAPFMKATLARPLQCFEEG 60
Query: 245 AEKCHTDSLSSIVASCSWGKPVAVGTGSRFDVLWD 279
AEK ++D L S+V++CSWG P +GTGS F + W+
Sbjct: 61 AEKVYSDQLDSVVSTCSWGNPAPIGTGSAFKIHWN 95
>M4EFP9_BRARP (tr|M4EFP9) DNA-directed RNA polymerase OS=Brassica rapa subsp.
pekinensis GN=Bra027611 PE=3 SV=1
Length = 1443
Score = 112 bits (279), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 76/252 (30%), Positives = 126/252 (50%), Gaps = 6/252 (2%)
Query: 53 CVTFISLDGDGLDKT-TEILADVICPVLLGTIIQGDPRISSANITWINPDSNAWVRNPSK 111
C+T L+ D + + V+ P LL + ++G I +I W++ A RN K
Sbjct: 1030 CITVTVLEASRHDSLELDAIRLVLIPFLLDSPVKGYREIKKVDILWVD-RPKAPQRN-KK 1087
Query: 112 SSNGELALDIILEEAAVKQSGDAWRIVLDSCLPVLNLIDTRRSIPYAIKQVQELLGISCT 171
GEL L + + K+S W +L++CLP++++ID RS P I+Q + GI
Sbjct: 1088 GLAGELFLKVTMHGVRGKRS--FWSALLETCLPIMDMIDWTRSHPDNIRQCCSVYGIDAG 1145
Query: 172 FDQAIQRLAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTD 231
+ L ++V K +LREHL+L+A S++ G V N G+ + + PF
Sbjct: 1146 RSIFLADLESAVSDTGKAMLREHLLLVADSLSVTGEFVALNPKGWSRQRQAESTPAPFAQ 1205
Query: 232 ATLFTPKKCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSRFDVLWDAKERKSNELEGM 291
A +P +CF +AA++ TD L + + +WGK + GTG +F+++ K + +
Sbjct: 1206 ACFSSPSQCFLKAAKEGVTDELEGSIDALAWGKVPSFGTGDQFEIIISPKNHGFST-PVV 1264
Query: 292 DVYNFLHMVKSL 303
DVY FL +L
Sbjct: 1265 DVYGFLSRTATL 1276
>K7LMQ8_SOYBN (tr|K7LMQ8) DNA-directed RNA polymerase OS=Glycine max PE=3 SV=1
Length = 1454
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 110/225 (48%), Gaps = 10/225 (4%)
Query: 73 DVICPVLLGTIIQGDPRISSANITWINPDSNAWVRNPSKSSNGELALDIILEEAAVKQSG 132
D++ P LLGT I+G + ++ W N + V+N +GEL L + L + G
Sbjct: 1080 DLVIPFLLGTAIKGFLDVKKVDVLWNN---QSKVKNSCNGFSGELYLRVTLSSEGSR--G 1134
Query: 133 DAWRIVLDSCLPVLNLIDTRRSIPYAIKQVQELLGISCTFDQAIQRLAASVKMVAKGVLR 192
W ++L+ C ++++ID RS P I GI + LA++ K +L
Sbjct: 1135 RFWGVLLNLCHKIMHIIDWTRSHPDNINHFSSAYGIDAGWQYFFNSLASATSDTGKSILP 1194
Query: 193 EHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDATLFTPKKCFERAAEKCHTDS 252
+HL L+A+S++C G VG N G + ++ PF A P CF +AA+ TD+
Sbjct: 1195 KHLCLVANSLSCSGEFVGLNAKGMALQRKHASVSSPFVQACFANPGSCFIKAAKSGVTDN 1254
Query: 253 LSSIVASCSWGKPVAVGTGSRFDVLWDAKERKSNELEGMDVYNFL 297
L + + +WG +++GT FD+++ K KS +VY L
Sbjct: 1255 LQGSLDALAWGNCLSMGTSGMFDIIYSEKVAKSG-----NVYELL 1294
>M4FIT1_BRARP (tr|M4FIT1) Uncharacterized protein OS=Brassica rapa subsp.
pekinensis GN=Bra041010 PE=4 SV=1
Length = 478
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 116/224 (51%), Gaps = 5/224 (2%)
Query: 74 VICPVLLGTIIQGDPRISSANITWINPDSNAWVRNPSKSSNGELALDIILEEAAVKQSGD 133
V+ P LL + ++G I I W + A RN K GEL + + + V+ +
Sbjct: 92 VLIPFLLDSPVKGYGEIKKVEILWAD-RPKAPKRN-KKHMAGELFVKVTMH--GVRGKKN 147
Query: 134 AWRIVLDSCLPVLNLIDTRRSIPYAIKQVQELLGISCTFDQAIQRLAASVKMVAKGVLRE 193
W +L++CLP++++ID RS P I+Q + GI + L ++V KG+LRE
Sbjct: 148 IWSALLETCLPIMDMIDWTRSHPDNIRQCCSVYGIDAGRSIFLADLESAVADTGKGMLRE 207
Query: 194 HLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDATLFTPKKCFERAAEKCHTDSL 253
HL+L+A ++ G V N G+ + + PFT A +P +CF +AA++ TD L
Sbjct: 208 HLLLVADCLSVTGEFVALNPKGWSKQRQAESTPAPFTQACFSSPSQCFLKAAKEGVTDEL 267
Query: 254 SSIVASCSWGKPVAVGTGSRFDVLWDAKERKSNELEGMDVYNFL 297
+ + +WGK + GTG +F+++ K+ + + VY+FL
Sbjct: 268 QGSIDALAWGKVPSFGTGDQFEIIISPKDHGFSS-TPVKVYDFL 310
>K7K551_SOYBN (tr|K7K551) DNA-directed RNA polymerase OS=Glycine max PE=3 SV=1
Length = 1454
Score = 108 bits (271), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 106/225 (47%), Gaps = 10/225 (4%)
Query: 73 DVICPVLLGTIIQGDPRISSANITWINPDSNAWVRNPSKSSNGELALDIILEEAAVKQSG 132
D++ P LLGT IQG + +I W N + V N +GEL L + L + G
Sbjct: 1080 DLVIPFLLGTAIQGFLDVKKVDILWNN---QSKVTNSRNGFSGELYLRVTLSSEGSR--G 1134
Query: 133 DAWRIVLDSCLPVLNLIDTRRSIPYAIKQVQELLGISCTFDQAIQRLAASVKMVAKGVLR 192
W ++L C ++++ID RS I GI + LA + K +L
Sbjct: 1135 RFWGVLLKLCHKIMHIIDWTRSHTDNINHFSSAYGIDAGWQYFFNSLACATSDTGKSILP 1194
Query: 193 EHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDATLFTPKKCFERAAEKCHTDS 252
+HL L+A+S++C G VG N G + ++ PF A P CF +AA+ TD+
Sbjct: 1195 KHLCLVANSLSCSGEFVGLNAKGMALQRKHASVSSPFVQACFANPGSCFIKAAKSGATDN 1254
Query: 253 LSSIVASCSWGKPVAVGTGSRFDVLWDAKERKSNELEGMDVYNFL 297
L + +WG +++GT FDV++ K KS +DVY L
Sbjct: 1255 LQGSLDGLAWGNCLSMGTSGMFDVIYSEKVAKS-----VDVYELL 1294
>B9GKP9_POPTR (tr|B9GKP9) DNA-directed RNA polymerase OS=Populus trichocarpa
GN=NRPD901 PE=3 SV=1
Length = 1517
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 117/233 (50%), Gaps = 16/233 (6%)
Query: 69 EILADVICPVLLGTIIQGDPRISSANITWIN----PDSNAWVRNPSKSSNGELALDIILE 124
E + D++ P LL T+I+G I +I W + P S+ +R GEL L + +
Sbjct: 1115 ETIQDLMIPFLLETVIKGFMEIQKVDILWNDKPKIPKSHNRLR-------GELFLRVHMS 1167
Query: 125 EAAVKQSGDAWRIVLDSCLPVLNLIDTRRSIPYAIKQVQELLGISCTFDQAIQRLAASVK 184
+ K W ++D CL +++LID RS P I + GI + + L +++
Sbjct: 1168 RGSDKTR--LWNQLMDDCLSIMDLIDWARSHPDNIHECCLAYGIDAGWKFFLNNLQSAMS 1225
Query: 185 MVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDATLFTPKKCFERA 244
V K VL EHL+L+A+ ++ G VG N G K ++ PF A P CF RA
Sbjct: 1226 DVGKTVLPEHLLLVANCLSVTGEFVGLNAKGLKRQREHASVSTPFVQACFSNPGDCFIRA 1285
Query: 245 AEKCHTDSLSSIVASCSWGKPVAVGTGSRFDVLWDAKERKSNELEGMDVYNFL 297
A+ D L + + +WGK A+GTG +FD+++ K + + + +DVYN L
Sbjct: 1286 AKAGVVDDLQGSIDALAWGKVPAIGTG-QFDIVYSGKGLEFS--KPVDVYNLL 1335
>I1JA29_SOYBN (tr|I1JA29) DNA-directed RNA polymerase OS=Glycine max PE=3 SV=2
Length = 1457
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 106/225 (47%), Gaps = 7/225 (3%)
Query: 73 DVICPVLLGTIIQGDPRISSANITWINPDSNAWVRNPSKSSNGELALDIILEEAAVKQSG 132
D++ P LLGT IQG + +I W N + V N +GEL L + L + G
Sbjct: 1080 DLVIPFLLGTAIQGFLDVKKVDILWNN---QSKVTNSRNGFSGELYLRVTLSSEGSR--G 1134
Query: 133 DAWRIVLDSCLPVLNLIDTRRSIPYAIKQVQELLGISCTFDQAIQRLAASVKMVAKGVLR 192
W ++L C ++++ID RS I GI + LA + K +L
Sbjct: 1135 RFWGVLLKLCHKIMHIIDWTRSHTDNINHFSSAYGIDAGWQYFFNSLACATSDTGKSILP 1194
Query: 193 EHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDATLFTPKKCFERAAEKCHTDS 252
+HL L+A+S++C G VG N G + ++ PF A P CF +AA+ TD+
Sbjct: 1195 KHLCLVANSLSCSGEFVGLNAKGMALQRKHASVSSPFVQACFANPGSCFIKAAKSGATDN 1254
Query: 253 LSSIVASCSWGKPVAVGTGSRFDVLWDAKERKSNELEGMDVYNFL 297
L + +WG +++GT FDV++ E+ + +DVY L
Sbjct: 1255 LQGSLDGLAWGNCLSMGTSGMFDVIYS--EKGHQVAKSVDVYELL 1297
>Q1L5X6_SOLLC (tr|Q1L5X6) DNA-directed RNA polymerase (Fragment) OS=Solanum
lycopersicum GN=RPD1 PE=2 SV=1
Length = 1138
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 114/231 (49%), Gaps = 15/231 (6%)
Query: 71 LADVICPVLLGTIIQGDPRISSANITWINPDSNAWVRNPSKSS---NGELALDIILEEAA 127
L DV+ P LL T+I+G +I W + +PSKSS GEL L + + E+
Sbjct: 755 LRDVVIPFLLETVIKGFSAFKKVDILW------KELPSPSKSSRGPTGELYLQVFMSESC 808
Query: 128 VKQSGDAWRIVLDSCLPVLNLIDTRRSIPYAIKQVQELLGISCTFDQAIQRLAASVKMVA 187
+ W ++DSCL + +LID RS P + + GI ++ + +L ++V
Sbjct: 809 DRIK--FWNALVDSCLQIRDLIDWERSYPDDVHDLTVAYGIDVAWEYFLCKLHSAVSETG 866
Query: 188 KGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDATLFTPKKCFERAAEK 247
K +L EHL+L A S+T G V + G + + PF A P F RAA+
Sbjct: 867 KKILPEHLVLAADSLTTTGEFVPLSAKGLTLQRKAAGVVSPFMQACFTNPGDSFVRAAKM 926
Query: 248 CHTDSLSSIVASCSWGKPVAVGTGSRFDVLWDAKERKSNEL-EGMDVYNFL 297
+D L + S +WGK ++GTGS FD+++ K EL E ++VY L
Sbjct: 927 GLSDDLQGSLESLAWGKTPSIGTGSSFDIMYSG---KGYELAEQINVYTLL 974
>K4CP21_SOLLC (tr|K4CP21) DNA-directed RNA polymerase OS=Solanum lycopersicum
GN=Solyc08g080210.2 PE=3 SV=1
Length = 1206
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 114/231 (49%), Gaps = 15/231 (6%)
Query: 71 LADVICPVLLGTIIQGDPRISSANITWINPDSNAWVRNPSKSS---NGELALDIILEEAA 127
L DV+ P LL T+I+G +I W + +PSKSS GEL L + + E+
Sbjct: 823 LRDVVIPFLLETVIKGFSAFKKVDILW------KELPSPSKSSRGPTGELYLQVFMSESC 876
Query: 128 VKQSGDAWRIVLDSCLPVLNLIDTRRSIPYAIKQVQELLGISCTFDQAIQRLAASVKMVA 187
+ W ++DSCL + +LID RS P + + GI ++ + +L ++V
Sbjct: 877 DRIK--FWNALVDSCLQIRDLIDWERSYPDDVHDLTVAYGIDVAWEYFLCKLHSAVSETG 934
Query: 188 KGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDATLFTPKKCFERAAEK 247
K +L EHL+L A S+T G V + G + + PF A P F RAA+
Sbjct: 935 KKILPEHLVLAADSLTTTGEFVPLSAKGLTLQRKAAGVVSPFMQACFTNPGDSFVRAAKM 994
Query: 248 CHTDSLSSIVASCSWGKPVAVGTGSRFDVLWDAKERKSNEL-EGMDVYNFL 297
+D L + S +WGK ++GTGS FD+++ K EL E ++VY L
Sbjct: 995 GLSDDLQGSLESLAWGKTPSIGTGSSFDIMYSG---KGYELAEQINVYTLL 1042
>Q1L5X5_ANTMA (tr|Q1L5X5) DNA-directed RNA polymerase (Fragment) OS=Antirrhinum
majus GN=RPD1 PE=2 SV=1
Length = 1112
Score = 102 bits (254), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 113/232 (48%), Gaps = 7/232 (3%)
Query: 66 KTTEILADVICPVLLGTIIQGDPRISSANITWINPDSNAWVRNPSKSSNGELALDIILEE 125
+ + L +++ PVLL T+++G P +I W + S + SK S+GE + + + E
Sbjct: 746 EILDYLRNMVIPVLLRTVVKGFPEFKKVDILWKDEQSRSRF---SKCSSGEPYVRVFMSE 802
Query: 126 AAVKQSGDAWRIVLDSCLPVLNLIDTRRSIPYAIKQVQELLGISCTFDQAIQRLAASVKM 185
+ W I+++ L + +LID RS P + E GI + + L +++
Sbjct: 803 NC--ERARFWNILVEKSLRIRSLIDWDRSHPDDVHDYGEAFGIDTAWMCFVNSLNSAISE 860
Query: 186 VAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDATLFTPKKCFERAA 245
K +L EHLI A+ ++ G V N G ++ I PF A P CF +AA
Sbjct: 861 TGKTILPEHLIATANCLSMTGEFVSLNAKGLAQQRKEATINSPFVQACFSNPSDCFIKAA 920
Query: 246 EKCHTDSLSSIVASCSWGKPVAVGTGSRFDVLWDAKERKSNELEGMDVYNFL 297
+ D+L V S +WG+ +GTG +FD+++ K + + + DVY+ L
Sbjct: 921 KMGQMDNLQGSVDSLAWGQTPPIGTGGQFDIIYSGKGHEPS--KPTDVYSLL 970
>F6HUI3_VITVI (tr|F6HUI3) DNA-directed RNA polymerase OS=Vitis vinifera
GN=VIT_02s0025g04530 PE=3 SV=1
Length = 1433
Score = 102 bits (253), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 116/230 (50%), Gaps = 29/230 (12%)
Query: 73 DVICPVLLGTIIQGDPRISSANITWINPDSNAWVRNPS--KSSNGELALDIILEEAAVKQ 130
D++ P LLG +++G ++N KSS+G L L + + K+
Sbjct: 1050 DLVIPFLLGAVVKG-----------------CCIKNSDVLKSSSGRLYLRVYVSGDCGKK 1092
Query: 131 SGDAWRIVLDSCLPVLNLIDTRRSIPYAIKQVQELLGISCTFDQAIQRLAASVKMVAKGV 190
+ W +++D+CL ++++ID RS P I + + GI + + L +++ + K V
Sbjct: 1093 --NFWGVLMDACLQIMDMIDWERSHPDNIHDIFVVYGIDAGWKYFLNSLKSAISDIGKTV 1150
Query: 191 LREHLILLASSMTCGGNLVGFNTGGYKALARQ---LNIQVPFTDATLFTPKKCFERAAEK 247
L EHL+L+AS ++ G VG N G +ARQ +I PF +P CF +A ++
Sbjct: 1151 LPEHLLLVASCLSATGEFVGLNAKG---MARQKELTSISSPFMQGCFSSPGSCFIKAGKR 1207
Query: 248 CHTDSLSSIVASCSWGKPVAVGTGSRFDVLWDAKERKSNELEGMDVYNFL 297
D+L + + +WGK +VG+G FD+L+ AK + E D+Y L
Sbjct: 1208 AVADNLHGSLDALAWGKIPSVGSGGHFDILYSAKGHELARPE--DIYKLL 1255
>B9RC12_RICCO (tr|B9RC12) DNA-directed RNA polymerase OS=Ricinus communis
GN=RCOM_1683300 PE=3 SV=1
Length = 1475
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 113/211 (53%), Gaps = 12/211 (5%)
Query: 71 LADVICPVLLGTIIQGDPRISSANITWINPDSNAWVRNPSKSSN---GELALDIILEEAA 127
+ D++ P LL T+++G I+ +I W W R SK+ N GEL L + + +A
Sbjct: 1071 IQDLMIPFLLETVLKGLMEINKVDILW-----KDWPR-ISKTHNQPYGELYLRVSM--SA 1122
Query: 128 VKQSGDAWRIVLDSCLPVLNLIDTRRSIPYAIKQVQELLGISCTFDQAIQRLAASVKMVA 187
+ W +++D CLP++++ID S P ++ GI + +QRL +++ V
Sbjct: 1123 DSEKTRLWNLLMDYCLPIMDMIDWTCSRPDNVRDFSLAYGIDAGWKFFLQRLESAISDVG 1182
Query: 188 KGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDATLFTPKKCFERAAEK 247
K VL EH++L+A+ ++ G VG N G+K ++ PF A +P CF +AA+
Sbjct: 1183 KSVLPEHMLLVANCLSVTGEFVGLNAKGWKRQREDASVSSPFVQACFSSPGNCFIKAAKA 1242
Query: 248 CHTDSLSSIVASCSWGKPVAVGTGSRFDVLW 278
D L + + +WGK +VGTG +FD+++
Sbjct: 1243 GVKDDLQGSLDALAWGKVPSVGTG-QFDIVY 1272
>R0HUP7_9BRAS (tr|R0HUP7) Uncharacterized protein OS=Capsella rubella
GN=CARUB_v10019657mg PE=4 SV=1
Length = 1459
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 110/225 (48%), Gaps = 8/225 (3%)
Query: 74 VICPVLLGTIIQGDPRISSANITWIN-PDSNAWVRNPSKSSNGELALDIILEEAAVKQSG 132
++ P LL + ++G I +I W + P + N GEL L + + K+
Sbjct: 1072 ILIPFLLDSPVKGYQEIKKVDILWTDRPKAPKMYGN---HLAGELYLRVTMNGDRGKR-- 1126
Query: 133 DAWRIVLDSCLPVLNLIDTRRSIPYAIKQVQELLGISCTFDQAIQRLAASVKMVAKGVLR 192
+ W ++++CLP++++ID RS P I+Q + GI + L ++V K +LR
Sbjct: 1127 NCWSSLVETCLPIMDMIDWSRSHPDNIRQCCSVYGIDAGRSIFVANLESAVSDTGKTILR 1186
Query: 193 EHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDATLFTPKKCFERAAEKCHTDS 252
EHL+L A S++ G V N G+ + + PFT A +P +CF +AA++ D
Sbjct: 1187 EHLLLAADSLSITGEFVALNAKGWSKQRQVESTPAPFTQACFSSPSQCFLKAAKEGVVDQ 1246
Query: 253 LSSIVASCSWGKPVAVGTGSRFDVLWDAKERKSNELEGMDVYNFL 297
L + + +WGK GTG +FD++ K +DVY L
Sbjct: 1247 LQGSIDTLAWGKVPGFGTGDQFDIIISPKVHGFT--TPVDVYELL 1289
>D7KU36_ARALL (tr|D7KU36) DNA-directed RNA polymerase OS=Arabidopsis lyrata subsp.
lyrata GN=ARALYDRAFT_893170 PE=3 SV=1
Length = 1456
Score = 99.0 bits (245), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 112/227 (49%), Gaps = 12/227 (5%)
Query: 74 VICPVLLGTIIQGDPRISSANITWINPDSNAWVRNPSKSSNGE-LALDIILEEAAVKQSG 132
V+ P LL + ++G I +I W + R + NG+ LA ++ L G
Sbjct: 1067 VLIPFLLDSPVKGSQEIKKVDILWTD-------RPKAPKRNGDHLAGELYLRVTMYGDRG 1119
Query: 133 --DAWRIVLDSCLPVLNLIDTRRSIPYAIKQVQELLGISCTFDQAIQRLAASVKMVAKGV 190
+ W +L++CLP++++ID RS P I+Q + GI + L ++V K +
Sbjct: 1120 KRNCWTALLETCLPIMDMIDWSRSHPDNIRQCCSVYGIDAGRSIFVANLESAVSDTGKTI 1179
Query: 191 LREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDATLFTPKKCFERAAEKCHT 250
L+EHL+L+A S++ G V N G+ + + PFT A +P +CF +AA++
Sbjct: 1180 LKEHLLLVADSLSVTGEFVALNAKGWSKQRQVESTPAPFTQACFSSPSQCFLKAAKEGVR 1239
Query: 251 DSLSSIVASCSWGKPVAVGTGSRFDVLWDAKERKSNELEGMDVYNFL 297
D L + + +WGK GTG +F+++ K ++VY+ L
Sbjct: 1240 DDLQGSIDALAWGKVPGFGTGDQFEIIISPKVHGFT--TPVNVYDLL 1284
>M5WEG2_PRUPE (tr|M5WEG2) Uncharacterized protein OS=Prunus persica
GN=PRUPE_ppa000278mg PE=4 SV=1
Length = 1356
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 102/212 (48%), Gaps = 9/212 (4%)
Query: 69 EILADVICPVLLGTIIQGDPRISSANITWINPDSNAWVRNPSK--SSNGELALDIILEEA 126
+I D++ P LLGT+++G + +I W N R K S+GEL L + +
Sbjct: 977 DIARDLVIPFLLGTVVKGFLEVKKVDILW-----NDHPRESKKIHGSSGELYLRVSMSGK 1031
Query: 127 AVKQSGDAWRIVLDSCLPVLNLIDTRRSIPYAIKQVQELLGISCTFDQAIQRLAASVKMV 186
++ W +++D+CL +++LID RS P + GI + + L + +
Sbjct: 1032 TGRRR--LWSMLMDNCLQIMDLIDWSRSHPDNVHDYCIAYGIDAGWKYFLNNLETAANDI 1089
Query: 187 AKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDATLFTPKKCFERAAE 246
K +L +HLIL+A ++ G VG N G ++ PF A +P CF +AA+
Sbjct: 1090 GKDILPQHLILVADCLSATGEFVGLNAKGIAQQKGHTSVSSPFVQACFSSPGACFIKAAK 1149
Query: 247 KCHTDSLSSIVASCSWGKPVAVGTGSRFDVLW 278
D L V + +WG GTG +FD+L+
Sbjct: 1150 GGVVDELHGSVEALAWGNTPPSGTGRQFDILY 1181
>J3MZZ4_ORYBR (tr|J3MZZ4) DNA-directed RNA polymerase OS=Oryza brachyantha
GN=OB09G25730 PE=3 SV=1
Length = 1779
Score = 92.0 bits (227), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 116/248 (46%), Gaps = 22/248 (8%)
Query: 53 CVTFISLDGDGLDKTTEILADVICPVLLGTIIQGDPRISSANITWINPDSNAWVRNPSKS 112
C+T ++ I+ + + P +L T+++G + + +
Sbjct: 1383 CITMVAQVESNSTSQLNIIKERVIPSILETLLKGFLEFKNVKVEY--------------Q 1428
Query: 113 SNGELALDIILEEAAVKQSGDAWRIVLDSCLPVLNLIDTRRSIPYAIKQVQELLGISCTF 172
+ EL + + + E +SG W + ++C+P++ LID RS P + + GI +
Sbjct: 1429 QDSELVVKVGMSEHC--KSGKFWAALQNACIPIMELIDWERSQPERVNDIFCSYGIDSAW 1486
Query: 173 DQAIQRLAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDA 232
++ L ++ + + + R+HL+++A ++ G G + G K L+I PF++A
Sbjct: 1487 KFFVESLRSTTDAIGRNIRRQHLLVVADCLSVSGQFHGLTSQGLKHQRTSLSISSPFSEA 1546
Query: 233 TLFTPKKCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSRFDVLWDAK--ERKSNELEG 290
P F AA++ D+LS + + +WGK VGT F +L+ K E K NE
Sbjct: 1547 CFSRPAHSFINAAKQDSVDNLSGTLDAIAWGKEPCVGTSGPFKILYSGKSLETKQNE--- 1603
Query: 291 MDVYNFLH 298
++Y+FLH
Sbjct: 1604 -NIYDFLH 1610
>J3M0K5_ORYBR (tr|J3M0K5) DNA-directed RNA polymerase OS=Oryza brachyantha
GN=OB04G29300 PE=3 SV=1
Length = 1474
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 113/246 (45%), Gaps = 18/246 (7%)
Query: 53 CVTFISLDGDGLDKTTEILADVICPVLLGTIIQGDPRISSANITWINPDSNAWVRNPSKS 112
CVT + I+ + + P +L T+++G + +
Sbjct: 1078 CVTMVVQVESNSTSQLTIIKERVIPSILATLLKGFLEFKNVKVQC--------------Q 1123
Query: 113 SNGELALDIILEEAAVKQSGDAWRIVLDSCLPVLNLIDTRRSIPYAIKQVQELLGISCTF 172
+ EL + + + E +SG W + ++C+P++ LID RS P + V GI +
Sbjct: 1124 QDSELVVRVDMSEHC--KSGKFWATLQNACIPIMELIDWERSRPERLYDVFCSYGIDSAW 1181
Query: 173 DQAIQRLAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDA 232
++ L ++ + + + R+HL+++A ++ G G ++ G K L+I PF++A
Sbjct: 1182 KFFVESLRSTTDAIGRNIRRQHLLVVADCLSVSGQFHGLSSQGLKQQRTSLSISSPFSEA 1241
Query: 233 TLFTPKKCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSRFDVLWDAKERKSNELEGMD 292
P F AA+K D LS + + +WGK GT F +L+ K ++ + E +
Sbjct: 1242 CFSRPAHSFINAAKKDSVDKLSGTLDAIAWGKEPCTGTSGPFKILYSGKSHETKQKE--N 1299
Query: 293 VYNFLH 298
+YNFLH
Sbjct: 1300 IYNFLH 1305
>G7KER5_MEDTR (tr|G7KER5) DNA-directed RNA polymerase OS=Medicago truncatula
GN=MTR_5g011000 PE=3 SV=1
Length = 1687
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 102/223 (45%), Gaps = 7/223 (3%)
Query: 75 ICPVLLGTIIQGDPRISSANITWINPDSNAWVRNPSKSSNGELALDIILEEAAVKQSGDA 134
+ P LL T I+G I +I W + V S GEL L + + +G
Sbjct: 1261 LIPFLLQTAIKGFLEIKKVDILWKDLPK---VTKSYNGSAGELYLRVTMSSG--NDNGTF 1315
Query: 135 WRIVLDSCLPVLNLIDTRRSIPYAIKQVQELLGISCTFDQAIQRLAASVKMVAKGVLREH 194
W +++ C ++ LID RS P I GI + L+++ K +L +H
Sbjct: 1316 WGRLINHCHRIMPLIDWTRSHPDNIHHFCSAFGIDAGWQHYFHNLSSATSDTGKSILPKH 1375
Query: 195 LILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDATLFTPKKCFERAAEKCHTDSLS 254
L L+A+S++ G VG N G + ++ PF A P F +AA+ D+L
Sbjct: 1376 LRLVANSLSASGEFVGLNAKGMARQRKHASVSSPFVQACFSNPGSSFLKAAKSGIVDNLQ 1435
Query: 255 SIVASCSWGKPVAVGTGSRFDVLWDAKERKSNELEGMDVYNFL 297
+ + +WG + +GTG +FD+++ K + N + +DVY L
Sbjct: 1436 GNLDALAWGNCLPMGTGGQFDIIYSEKVEEIN--KSVDVYGLL 1476
>I1HLK0_BRADI (tr|I1HLK0) Uncharacterized protein OS=Brachypodium distachyon
GN=BRADI2G34877 PE=4 SV=1
Length = 609
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 114/248 (45%), Gaps = 20/248 (8%)
Query: 53 CVTFISLDGDGLDKTTEI--LADVICPVLLGTIIQGDPRISSANITWINPDSNAWVRNPS 110
C+T ++ D T+++ L PVLL T ++G I
Sbjct: 214 CITVVAQDESNSTSTSQLDDLKKRAIPVLLATPVKGFLEFKDVEIQC------------- 260
Query: 111 KSSNGELALDIILEEAAVKQSGDAWRIVLDSCLPVLNLIDTRRSIPYAIKQVQELLGISC 170
+ EL + + + + +SG W + +C+ ++ LID RS P ++ + GI
Sbjct: 261 -QRDNELVVKVNMSKHC--KSGIFWTTLKKACIGIMGLIDWERSRPGSVYDIFCPCGIDS 317
Query: 171 TFDQAIQRLAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFT 230
+ ++ L + + + + REHL+++A +++ G G ++ G K QL+ PF+
Sbjct: 318 AWKYFVESLRSKTDDIGRNIHREHLLVVADTLSVSGQFHGLSSQGLKQQRTQLSTSSPFS 377
Query: 231 DATLFTPKKCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSRFDVLWDAKERKSNELEG 290
+A P F +AA++C D+L + + +WGK GT F +++ K + + E
Sbjct: 378 EACFSRPADTFIKAAKQCSVDNLCGNIDALAWGKEPPAGTSGPFKIMYAGKPHEPVQNE- 436
Query: 291 MDVYNFLH 298
++Y FLH
Sbjct: 437 -NIYGFLH 443
>B9G500_ORYSJ (tr|B9G500) DNA-directed RNA polymerase OS=Oryza sativa subsp.
japonica GN=OsJ_30285 PE=3 SV=1
Length = 1384
Score = 89.0 bits (219), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 117/248 (47%), Gaps = 18/248 (7%)
Query: 51 SPCVTFISLDGDGLDKTTEILADVICPVLLGTIIQGDPRISSANITWINPDSNAWVRNPS 110
S CVT ++ +I+ + + P +L T+++G + +
Sbjct: 986 SCCVTMVAQVESNSTSQLDIIKERVIPSILATLLKGFLEFENVKVEC------------- 1032
Query: 111 KSSNGELALDIILEEAAVKQSGDAWRIVLDSCLPVLNLIDTRRSIPYAIKQVQELLGISC 170
+ EL + + + E ++G W + ++C+P++ LID RS P + + GI
Sbjct: 1033 -QQDSELVVKVGMSEHC--KTGKFWATLQNACIPIMELIDWERSRPERVYDIFCSYGIDS 1089
Query: 171 TFDQAIQRLAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFT 230
+ ++ L ++ + + + R+HL+++A ++ G G ++ G K L+I PF+
Sbjct: 1090 AWKYFVESLRSTTDAIGRNIHRQHLLVVADCLSISGQFHGLSSQGLKQQRAWLSISSPFS 1149
Query: 231 DATLFTPKKCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSRFDVLWDAKERKSNELEG 290
+A P F AA++ D+LS + + +WGK GT F VL+ K +K+ +
Sbjct: 1150 EACFSRPAYSFINAAKRDSVDNLSGALDAIAWGKEPCAGTSGPFKVLYSGKSQKTK--QN 1207
Query: 291 MDVYNFLH 298
++Y+FLH
Sbjct: 1208 KNIYDFLH 1215
>B8BED0_ORYSI (tr|B8BED0) DNA-directed RNA polymerase OS=Oryza sativa subsp. indica
GN=OsI_32338 PE=3 SV=1
Length = 1384
Score = 88.6 bits (218), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 117/248 (47%), Gaps = 18/248 (7%)
Query: 51 SPCVTFISLDGDGLDKTTEILADVICPVLLGTIIQGDPRISSANITWINPDSNAWVRNPS 110
S C+T ++ +I+ + + P +L T+++G + +
Sbjct: 986 SCCITMVAQVESNSTSQLDIIKERVIPSILATLLKGFLEFENVKVEC------------- 1032
Query: 111 KSSNGELALDIILEEAAVKQSGDAWRIVLDSCLPVLNLIDTRRSIPYAIKQVQELLGISC 170
+ EL + + + E ++G W + ++C+P++ LID RS P + + GI
Sbjct: 1033 -QQDSELVVKVGMSEHC--KTGKFWATLQNACIPIMELIDWERSRPERVYDIFCSYGIDS 1089
Query: 171 TFDQAIQRLAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFT 230
+ ++ L ++ + + V R+HL+++A ++ G G ++ G K L+I PF+
Sbjct: 1090 AWKYFVESLRSTTDAIGRNVHRQHLLVVADCLSISGQFHGLSSQGLKQQRAWLSISSPFS 1149
Query: 231 DATLFTPKKCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSRFDVLWDAKERKSNELEG 290
+A P F AA++ D+LS + + +WGK GT F VL+ K +K+ +
Sbjct: 1150 EACFSRPAYSFINAAKRDSVDNLSGALDAIAWGKEPCAGTSGPFKVLYSGKSQKTK--QN 1207
Query: 291 MDVYNFLH 298
++Y+FLH
Sbjct: 1208 KNIYDFLH 1215
>A9SIX8_PHYPA (tr|A9SIX8) DNA-directed RNA polymerase OS=Physcomitrella patens
subsp. patens GN=NRPDA1501 PE=3 SV=1
Length = 2458
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 121/250 (48%), Gaps = 19/250 (7%)
Query: 1 MLEELKINMAEVFQRCQEKLRSLNRKRKYYQTLKSTELFFSESCASPNFSSPCVTFISLD 60
++++L++++ + +R +++ + + K + ++FF S + C+ F
Sbjct: 1437 LMKQLQVDVELMVERLRQRFSGIIKNPKKHPM---GQIFFCVSYNCGISNGLCLHFSPKL 1493
Query: 61 GDGLD--KTTEILADVICPVLL---GTII--------QGDPRISSANITWINPDSNAWVR 107
+ + + EI + +LL GTII +GD RI S I +P W R
Sbjct: 1494 PNKMQNQRNDEIYNTALLALLLKIRGTIISGLLDCTVKGDERIESVIIVSEDPSRTTWHR 1553
Query: 108 NPSKSSNGELALDIILEEAAVK---QSGDAWRIVLDSCLPVLNLIDTRRSIPYAIKQVQE 164
+ + E L + + + K + GDAW V +CLP+++++D RS+PY+I++++
Sbjct: 1554 GLTCNQELEEELVLEVVVSPTKSKSKRGDAWASVKQACLPLMHMVDWNRSMPYSIQEIRH 1613
Query: 165 LLGISCTFDQAIQRLAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLN 224
LG+ ++ QRL + A H+ L+A MT G+ GFN G++ + +
Sbjct: 1614 ALGVEASYQMISQRLGLVLDKTAPHTRSVHVKLVADMMTFSGDANGFNFSGFQDMNKSTG 1673
Query: 225 IQVPFTDATL 234
I PFT+A+
Sbjct: 1674 ISAPFTEASF 1683
>I1PP12_ORYGL (tr|I1PP12) Uncharacterized protein OS=Oryza glaberrima PE=4 SV=1
Length = 577
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 112/248 (45%), Gaps = 22/248 (8%)
Query: 53 CVTFISLDGDGLDKTTEILADVICPVLLGTIIQGDPRISSANITWINPDSNAWVRNPSKS 112
CVT + +++ + + P +L T+++G + +
Sbjct: 181 CVTMVVQVEINSMSQLDVIKERVIPSILATLLKGFLEFKNVKVQC--------------Q 226
Query: 113 SNGELALDIILEEAAVKQSGDAWRIVLDSCLPVLNLIDTRRSIPYAIKQVQELLGISCTF 172
+ EL L + + E +SG W + ++C+P++ LID RS P + GI +
Sbjct: 227 EDNELVLKVGMSEHC--KSGKFWATLQNACIPIMELIDWERSRPERVYDNFCSYGIDSAW 284
Query: 173 DQAIQRLAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDA 232
++ L + + + + R+HL+++A ++ G G ++ G K L+I PF++A
Sbjct: 285 KFFVESLRYTTDAIGRNIHRQHLLVVADCLSVSGQFHGLSSQGLKQQRTWLSISSPFSEA 344
Query: 233 TLFTPKKCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSRFDVLWDAK--ERKSNELEG 290
P F AA++ D+LS + + +WGK G+ F +L+ K E K NE
Sbjct: 345 CFSRPAHSFINAAKRDSVDNLSGTLDAIAWGKEPCTGSSGPFKILYSGKSHETKQNE--- 401
Query: 291 MDVYNFLH 298
+Y+FLH
Sbjct: 402 -HIYDFLH 408
>Q0JAW4_ORYSJ (tr|Q0JAW4) Os04g0572600 protein OS=Oryza sativa subsp. japonica
GN=Os04g0572600 PE=4 SV=1
Length = 449
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 113/248 (45%), Gaps = 22/248 (8%)
Query: 53 CVTFISLDGDGLDKTTEILADVICPVLLGTIIQGDPRISSANITWINPDSNAWVRNPSKS 112
CVT + +++ + + P +L T+++G + +
Sbjct: 53 CVTMVVQVEINSMSQLDVIKERVIPSILATLLKGFLEFKNVKVQC--------------Q 98
Query: 113 SNGELALDIILEEAAVKQSGDAWRIVLDSCLPVLNLIDTRRSIPYAIKQVQELLGISCTF 172
+ EL L + + E +SG W + ++C+P++ LID RS P + GI +
Sbjct: 99 EDNELVLKVGMSEHC--KSGKFWATLQNACIPIMELIDWERSRPERVYDNFCSYGIDSAW 156
Query: 173 DQAIQRLAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDA 232
++ + ++ + + + R+HL+++A ++ G G ++ G K L+I PF++A
Sbjct: 157 KFFVESVRSTTDAIGRNIHRQHLLVVADCLSVSGQFHGLSSQGLKQQRTWLSISSPFSEA 216
Query: 233 TLFTPKKCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSRFDVLWDAK--ERKSNELEG 290
P F AA++ D+LS + + +WGK G+ F +L+ K E K NE
Sbjct: 217 CFSRPAHSFINAAKRDSVDNLSGTLDAIAWGKEPCAGSSGPFKILYSGKSHETKQNE--- 273
Query: 291 MDVYNFLH 298
+Y+FLH
Sbjct: 274 -HIYDFLH 280
>M0TPQ4_MUSAM (tr|M0TPQ4) DNA-directed RNA polymerase OS=Musa acuminata subsp.
malaccensis PE=3 SV=1
Length = 1674
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/290 (24%), Positives = 129/290 (44%), Gaps = 20/290 (6%)
Query: 18 EKLRSLNRKRKYYQTLKSTELFFSESCASP-----NFSSPCVTFISLDGDGLDKTTEILA 72
E ++ N R+ + F S++C+S + S C++ + + L + I
Sbjct: 884 ELIKHYNCMRERMNPMLPRLCFVSKNCSSAYKWKEHDDSFCMSVAAETSESLIQLDTI-R 942
Query: 73 DVICPVLLGTIIQGDPRISSANITWINPDSNAWVRNPSKSSNGELALDIILEEAAVKQSG 132
D++ P+LL T I+G W + + S EL L + + + + G
Sbjct: 943 DMVIPLLLETPIKG---------FWASEKVEILCES-LPGSGSELFLRVTMSKKCLP--G 990
Query: 133 DAWRIVLDSCLPVLNLIDTRRSIPYAIKQVQELLGISCTFDQAIQRLAASVKMVAKGVLR 192
W + D+C+P+++LID + S P + + GI + ++ L + + + + +
Sbjct: 991 SFWSDLQDACIPIMDLIDWQCSHPDNVYNISGTYGIDAAWKYFVKSLKSVTADIGRDIHK 1050
Query: 193 EHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDATLFTPKKCFERAAEKCHTDS 252
HL + A ++ G G +T G + ++I PF A L P CF AA++ D
Sbjct: 1051 RHLFMAADCLSVTGEFHGLSTKGLRQQRNDMSISSPFAQACLSNPVNCFVNAAKQGSMDH 1110
Query: 253 LSSIVASCSWGKPVAVGTGSRFDVLWDAKERKSNELEGMDVYNFLHMVKS 302
LS + + +WGK GTG F++++ K EG +Y LH +K+
Sbjct: 1111 LSGTLDAVAWGKEAPSGTGGPFEIVYSGKVHNLTRGEG--IYKNLHSIKA 1158
>C5YE51_SORBI (tr|C5YE51) DNA-directed RNA polymerase OS=Sorghum bicolor
GN=Sb06g025933 PE=3 SV=1
Length = 1203
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 117/250 (46%), Gaps = 20/250 (8%)
Query: 49 FSSPCVTFISL-DGDGLDKTTEILADVICPVLLGTIIQGDPRISSANITWINPDSNAWVR 107
S+ C+ ++L + + + + I VI P++L T+++G I
Sbjct: 810 ISACCIAVVALAEPNSMSQLDTIKKRVI-PIILDTLLKGFLEFKDVEIQC---------- 858
Query: 108 NPSKSSNGELALDIILEEAAVKQSGDAWRIVLDSCLPVLNLIDTRRSIPYAIKQVQELLG 167
+GEL + + + + G W + ++C+PV+ LID S P + + G
Sbjct: 859 ----QHDGELLVKVCMSHHC--KGGRFWATLQNACIPVMELIDWELSRPSNVADIFCSYG 912
Query: 168 ISCTFDQAIQRLAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQV 227
I + ++ L ++ + + + REHL+++A SM+ G ++ G K +L+I
Sbjct: 913 IDSAWKYFVESLKSATTDIGRNIRREHLLVIADSMSVTGQFHAISSHGLKQQRTRLSISS 972
Query: 228 PFTDATLFTPKKCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSRFDVLWDAKERKSNE 287
PF++A P + F AA++C D+L + + +WGK GT F+++ K + +
Sbjct: 973 PFSEACFSRPAQSFIDAAKQCSVDNLCGSLDAIAWGKEPFNGTSGPFEIMHSGKPHEPEQ 1032
Query: 288 LEGMDVYNFL 297
E +Y+FL
Sbjct: 1033 DES--IYDFL 1040
>Q01JX0_ORYSA (tr|Q01JX0) DNA-directed RNA polymerase OS=Oryza sativa
GN=OSIGBa0147H17.3 PE=3 SV=1
Length = 1407
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 109/232 (46%), Gaps = 22/232 (9%)
Query: 69 EILADVICPVLLGTIIQGDPRISSANITWINPDSNAWVRNPSKSSNGELALDIILEEAAV 128
+++ + + P +L T+++G + + + EL L + + E
Sbjct: 1027 DVIKERVIPSILATLLKGFLEFKNVKVQC--------------QEDNELVLKVGMSEHC- 1071
Query: 129 KQSGDAWRIVLDSCLPVLNLIDTRRSIPYAIKQVQELLGISCTFDQAIQRLAASVKMVAK 188
+SG W + ++C+P++ LID RS P + GI + ++ L ++ + +
Sbjct: 1072 -KSGKFWATLQNACIPIMELIDWERSRPERVYDNFCSYGIDSAWKFFVESLRSTTDAIGR 1130
Query: 189 GVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDATLFTPKKCFERAAEKC 248
+ R+HL+++A ++ G G ++ G K L+I PF++A P F AA++
Sbjct: 1131 NIHRQHLLVVADCLSVSGQFHGLSSQGLKQQRTWLSISSPFSEACFSRPAHSFINAAKRD 1190
Query: 249 HTDSLSSIVASCSWGKPVAVGTGSRFDVLWDAK--ERKSNELEGMDVYNFLH 298
D+LS + + +WGK G+ F +L+ K E K NE +Y+FLH
Sbjct: 1191 SVDNLSGTLDAIAWGKEPCTGSSGPFKILYSGKSHETKQNE----HIYDFLH 1238
>C0JR68_MAIZE (tr|C0JR68) DNA-directed RNA polymerase OS=Zea mays PE=2 SV=1
Length = 1444
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 93/184 (50%), Gaps = 4/184 (2%)
Query: 114 NGELALDIILEEAAVKQSGDAWRIVLDSCLPVLNLIDTRRSIPYAIKQVQELLGISCTFD 173
+GEL + + + E + G W + ++C+PV+ LID S P + + GI +
Sbjct: 1101 DGELLVKVCMSEHC--KGGRFWPTLQNACIPVMELIDWELSQPSNVSDIFCSYGIDSAWK 1158
Query: 174 QAIQRLAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDAT 233
++ L ++ + + REHL+++A S++ G ++ G K +L+I PF++A
Sbjct: 1159 YFVESLKSATTDTGRNIRREHLLVIADSLSVTGQFHALSSQGLKQQRTRLSISSPFSEAC 1218
Query: 234 LFTPKKCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSRFDVLWDAKERKSNELEGMDV 293
P + F AA++C D+L + + +WGK GT F+++ K + + E +
Sbjct: 1219 FSRPAQSFINAAKQCSVDNLCGSLDAVAWGKEPFNGTSGPFEIMHSGKPHEPEQNES--I 1276
Query: 294 YNFL 297
Y+FL
Sbjct: 1277 YDFL 1280
>C0JR65_MAIZE (tr|C0JR65) DNA-directed RNA polymerase OS=Zea mays PE=2 SV=1
Length = 1444
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 93/184 (50%), Gaps = 4/184 (2%)
Query: 114 NGELALDIILEEAAVKQSGDAWRIVLDSCLPVLNLIDTRRSIPYAIKQVQELLGISCTFD 173
+GEL + + + E + G W + ++C+PV+ LID S P + + GI +
Sbjct: 1101 DGELLVKVCMSEHC--KGGRFWPTLQNACIPVMELIDWELSQPSNVSDIFCSYGIDSAWK 1158
Query: 174 QAIQRLAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDAT 233
++ L ++ + + REHL+++A S++ G ++ G K +L+I PF++A
Sbjct: 1159 YFVESLKSATTDTGRNIRREHLLVIADSLSVTGQFHALSSQGLKQQRTRLSISSPFSEAC 1218
Query: 234 LFTPKKCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSRFDVLWDAKERKSNELEGMDV 293
P + F AA++C D+L + + +WGK GT F+++ K + + E +
Sbjct: 1219 FSRPAQSFINAAKQCSVDNLCGSLDAVAWGKEPFNGTSGPFEIMHSGKPHEPEQNES--I 1276
Query: 294 YNFL 297
Y+FL
Sbjct: 1277 YDFL 1280
>A5BZZ3_VITVI (tr|A5BZZ3) DNA-directed RNA polymerase OS=Vitis vinifera
GN=VITISV_011232 PE=3 SV=1
Length = 1393
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 83/163 (50%), Gaps = 8/163 (4%)
Query: 73 DVICPVLLGTIIQGDPRISSANITWI-NPDSNAWVRNPSKSSNGELALDIILEEAAVKQS 131
D++ P LLG +++G + +I W NPDS+ KSS+G L L + + K+
Sbjct: 1222 DLVIPFLLGAVVKGLLDVKKVDILWNDNPDSDVL-----KSSSGRLYLRVYVSGDCGKK- 1275
Query: 132 GDAWRIVLDSCLPVLNLIDTRRSIPYAIKQVQELLGISCTFDQAIQRLAASVKMVAKGVL 191
+ W +++D+CL ++++ID RS P I + + GI + + L +++ + K VL
Sbjct: 1276 -NFWGVLMDACLQIMDMIDWERSHPDNIHDIFVVYGIDAGWKYFLNSLKSAISDIGKTVL 1334
Query: 192 REHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDATL 234
EHL+L+AS ++ G VG N G +I PF
Sbjct: 1335 PEHLLLVASCLSATGEFVGLNAKGMARQKELTSISSPFMQGCF 1377
>K3XDU8_SETIT (tr|K3XDU8) DNA-directed RNA polymerase OS=Setaria italica
GN=Si000065m.g PE=3 SV=1
Length = 1303
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 116/249 (46%), Gaps = 20/249 (8%)
Query: 50 SSPCVTFIS-LDGDGLDKTTEILADVICPVLLGTIIQGDPRISSANITWINPDSNAWVRN 108
S+ C+T ++ + + + + I VI P +L T+++G I
Sbjct: 910 SACCITLVAQAESNSMSQLDTIKKRVI-PSILDTLLKGFLEFKDVEIQC----------- 957
Query: 109 PSKSSNGELALDIILEEAAVKQSGDAWRIVLDSCLPVLNLIDTRRSIPYAIKQVQELLGI 168
+GEL + + + E ++G W + ++C+PV+ LID +S P + + GI
Sbjct: 958 ---RHDGELLVKVGMSEHC--KAGRFWATLQNACIPVMELIDWEQSQPKNVYDIFCSYGI 1012
Query: 169 SCTFDQAIQRLAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVP 228
+ ++ L + + + V REHL+++A S++ G ++ G +L+I P
Sbjct: 1013 DSAWKCFVESLKSVTSDIGRNVRREHLLIVADSLSVTGQFQALSSQGLNQQRSRLSISSP 1072
Query: 229 FTDATLFTPKKCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSRFDVLWDAKERKSNEL 288
F++A P + F AA+ C D+L + + +WGK GT F+++ K + +
Sbjct: 1073 FSEACFSRPARSFINAAKHCSVDNLCGSLDAIAWGKEPFNGTSGPFEIMHAGKPHEPEQN 1132
Query: 289 EGMDVYNFL 297
E +Y+FL
Sbjct: 1133 ES--IYDFL 1139
>Q0IZR2_ORYSJ (tr|Q0IZR2) Os09g0555200 protein (Fragment) OS=Oryza sativa subsp.
japonica GN=Os09g0555200 PE=4 SV=1
Length = 318
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 77/151 (50%), Gaps = 2/151 (1%)
Query: 148 LIDTRRSIPYAIKQVQELLGISCTFDQAIQRLAASVKMVAKGVLREHLILLASSMTCGGN 207
LID RS P + + GI + ++ L ++ + + + R+HL+++A ++ G
Sbjct: 1 LIDWERSRPERVYDIFCSYGIDSAWKYFVESLRSTTDAIGRNIHRQHLLVVADCLSISGQ 60
Query: 208 LVGFNTGGYKALARQLNIQVPFTDATLFTPKKCFERAAEKCHTDSLSSIVASCSWGKPVA 267
G ++ G K L+I PF++A P F AA++ D+LS + + +WGK
Sbjct: 61 FHGLSSQGLKQQRAWLSISSPFSEACFSRPAYSFINAAKRDSVDNLSGALDAIAWGKEPC 120
Query: 268 VGTGSRFDVLWDAKERKSNELEGMDVYNFLH 298
GT F VL+ K +K+ + ++Y+FLH
Sbjct: 121 AGTSGPFKVLYSGKSQKTK--QNKNIYDFLH 149
>M0XPZ6_HORVD (tr|M0XPZ6) Uncharacterized protein OS=Hordeum vulgare var.
distichum PE=4 SV=1
Length = 373
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 234 LFTPKKCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSRFDVLW-DAKERKSNE-LEGM 291
L P +CFE AEK ++D L S+V++CSWG P +GTGS F + W D NE L G
Sbjct: 2 LQRPLQCFEEGAEKVYSDQLDSVVSTCSWGNPAPIGTGSAFKIHWNDGNTSAGNENLGGY 61
Query: 292 DVYNFLHMVKS 302
+Y FL V++
Sbjct: 62 GLYEFLAEVEA 72
>I1QR54_ORYGL (tr|I1QR54) Uncharacterized protein OS=Oryza glaberrima PE=4 SV=1
Length = 577
Score = 66.2 bits (160), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 64/120 (53%), Gaps = 2/120 (1%)
Query: 179 LAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDATLFTPK 238
L ++ + + + R+HL+++A ++ G G ++ G K L+I PF++A P
Sbjct: 291 LRSTTDAIGRNIHRQHLLVVADCLSISGQFHGLSSQGLKQQRAWLSISSPFSEACFSRPA 350
Query: 239 KCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSRFDVLWDAKERKSNELEGMDVYNFLH 298
F AA++ D+LS + + +WGK GT F VL+ K +K+ + ++Y+FLH
Sbjct: 351 YSFINAAKRDSVDNLSGALDAIAWGKEPCAGTSGPFKVLYSGKSQKTK--QNKNIYDFLH 408
>M0XPZ8_HORVD (tr|M0XPZ8) Uncharacterized protein OS=Hordeum vulgare var.
distichum PE=4 SV=1
Length = 72
Score = 63.9 bits (154), Expect = 3e-07, Method: Composition-based stats.
Identities = 25/55 (45%), Positives = 41/55 (74%)
Query: 123 LEEAAVKQSGDAWRIVLDSCLPVLNLIDTRRSIPYAIKQVQELLGISCTFDQAIQ 177
+++ + +SGD W +D+C+PV++LIDT RS+PY+I+QVQ++ GIS F + Q
Sbjct: 1 MDKNSTGESGDVWGTAMDACIPVMDLIDTTRSVPYSIQQVQQVFGISSAFGRVTQ 55
>A9SIR4_PHYPA (tr|A9SIR4) DNA-directed RNA polymerase OS=Physcomitrella patens
subsp. patens GN=NRPDA1502 PE=3 SV=1
Length = 1795
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 59/111 (53%), Gaps = 3/111 (2%)
Query: 71 LADVICPVLLGTIIQGDPRISSANITWINPDSNAWVRNPSKSSNG---ELALDIILEEAA 127
+ + I P LL ++GD RI + + P S W R + + EL L++ + ++
Sbjct: 1340 IQETIIPGLLDCTMKGDERIETVRVVCEGPASTTWHRRFAHCTGNLDEELVLEVYVSPSS 1399
Query: 128 VKQSGDAWRIVLDSCLPVLNLIDTRRSIPYAIKQVQELLGISCTFDQAIQR 178
K G AW V +C+ + +L+D RS+PY+I++++ LGI + +Q+
Sbjct: 1400 SKSRGMAWASVKQACVSLKDLVDWNRSMPYSIQEIRCSLGIEVAYQIVVQQ 1450
>M1BKB4_SOLTU (tr|M1BKB4) Uncharacterized protein OS=Solanum tuberosum
GN=PGSC0003DMG400018333 PE=4 SV=1
Length = 875
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 56/96 (58%), Gaps = 17/96 (17%)
Query: 709 GWDSQIASANSDSDRNFQWGKQGRES---FKK-SQGWGSNAGDMKNKNRPGR-------- 756
GWDSQ +SD+ QWG++ R + FK+ S+GWGS +G NRP R
Sbjct: 670 GWDSQKVGVE-ESDKQPQWGQRRRNAKGDFKENSRGWGSASGGEWKNNRPARSADDSNRG 728
Query: 757 ----APGPRLDMYSSEEQDILKDIEPIVQSIRRIMQ 788
A ++D++++EEQ+IL D++PI+ +R+IM
Sbjct: 729 VHFTATRQKVDLFTAEEQEILSDVDPIMLKVRKIMH 764