Miyakogusa Predicted Gene

Lj0g3v0327109.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0327109.2 Non Chatacterized Hit- tr|I3SCE2|I3SCE2_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,35.88,3e-17,no
description,Nucleic acid-binding, OB-fold,CUFF.22661.2
         (125 letters)

Database: trembl 
           41,451,118 sequences; 13,208,986,710 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

I3SCE2_LOTJA (tr|I3SCE2) Uncharacterized protein OS=Lotus japoni...    92   5e-17
G7K1P7_MEDTR (tr|G7K1P7) Replication factor A protein OS=Medicag...    57   3e-06
I3S5P4_LOTJA (tr|I3S5P4) Uncharacterized protein OS=Lotus japoni...    56   5e-06

>I3SCE2_LOTJA (tr|I3SCE2) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
          Length = 406

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 47/131 (35%), Positives = 78/131 (59%), Gaps = 6/131 (4%)

Query: 1   MLHIDLQDSRGKIRCLLIGSLVNIVADYLASNWTKRPVIAFQFVKVKSFKGTPV------ 54
           M+ +++ D +GK+ C L G  V IV DYL+SN  ++PV+  Q  K+KSF+G  V      
Sbjct: 158 MMLLEISDDKGKLECALFGEYVQIVLDYLSSNPLEKPVVVLQLAKLKSFRGKNVLQNVMK 217

Query: 55  SSKVHFNPNIHDAIELTKRLDVLGLNYHGPVGFIPTNESNLSLRDEMLNTYPRKTLTQLL 114
           +S++ FNP + +A  L  R+  L +  + PVG I +   ++ + ++ +N YP+KT+  L 
Sbjct: 218 ASRIIFNPEVAEAESLMDRISGLNMQPNQPVGHIISPNPSVPIFEDFMNNYPKKTICALN 277

Query: 115 ETKEVIKFILF 125
           ET E   FI++
Sbjct: 278 ETTEDGLFIVY 288


>G7K1P7_MEDTR (tr|G7K1P7) Replication factor A protein OS=Medicago truncatula
           GN=MTR_5g078250 PE=4 SV=1
          Length = 517

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/133 (27%), Positives = 65/133 (48%), Gaps = 12/133 (9%)

Query: 1   MLHIDLQDSRGKIRCLLIGSLVNIVADYLASNWTKRPVIAFQFVKVKSFKGTPV------ 54
           M+  ++ D+ GK  C L G  V+ +   +  +    P+I  QF KVK F+          
Sbjct: 163 MVIFEITDASGKCECALFGQYVDTLNKLMGKSGGGMPIILVQFAKVKIFRDKASLQNVMN 222

Query: 55  SSKVHFNPNIHDAIELTKRLDVLGLNYHGPVGFIPT--NESNLSLRDEMLNTYPRKTLTQ 112
           ++++  NP I  A ++ K +    ++    V  +P     S +SL ++ L T+P+KTL Q
Sbjct: 223 TTRILINPPIEQADQIRKSVTFGSMD----VSSVPRIGARSKVSLEEDFLRTFPKKTLEQ 278

Query: 113 LLETKEVIKFILF 125
           L  T E   F+++
Sbjct: 279 LHSTFEDGVFVVY 291


>I3S5P4_LOTJA (tr|I3S5P4) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
          Length = 333

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 61/117 (52%), Gaps = 8/117 (6%)

Query: 1   MLHIDLQDSRGKIRCLLIGSLVNIVADYLASNWTKRPVIAFQFVKVKSFKGT-------P 53
           ++ ++L D  G +  +++G  V++V+DYL+S+  ++P++  Q+ K+K F+G        P
Sbjct: 124 IMMMELYDENGSMSFVVLGDCVSVVSDYLSSHSKEKPLVVVQYAKIKKFEGKNLLHTLIP 183

Query: 54  VSSKVHFNPNIHDAIELTKRLDVLGLNYHGPVGFIPTNESNLSLRDEMLNTYPRKTL 110
           VS+ +H N    +A    KR++       G VG I   +    + D++   YP   L
Sbjct: 184 VST-IHLNQEFEEAKAFRKRMNGHSREIEGHVGDIDFFDFAYPMIDDVKIVYPSVDL 239