Miyakogusa Predicted Gene
- Lj0g3v0316659.3
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0316659.3 Non Chatacterized Hit- tr|D7SS16|D7SS16_VITVI
Putative uncharacterized protein OS=Vitis vinifera GN=,72.27,0,RNA
PSEUDOURIDYLATE SYNTHASE FAMILY PROTEIN,NULL; Pseudouridine
synthase,Pseudouridine synthase, cat,CUFF.21412.3
(383 letters)
Database: trembl
41,451,118 sequences; 13,208,986,710 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
K7MNI8_SOYBN (tr|K7MNI8) Uncharacterized protein OS=Glycine max ... 689 0.0
M5WPG3_PRUPE (tr|M5WPG3) Uncharacterized protein OS=Prunus persi... 539 e-151
D7SS16_VITVI (tr|D7SS16) Putative uncharacterized protein OS=Vit... 536 e-150
M1B239_SOLTU (tr|M1B239) Uncharacterized protein OS=Solanum tube... 519 e-145
K4CED5_SOLLC (tr|K4CED5) Uncharacterized protein OS=Solanum lyco... 509 e-142
B9SLG9_RICCO (tr|B9SLG9) Ribosomal pseudouridine synthase, putat... 507 e-141
M4F1X8_BRARP (tr|M4F1X8) Uncharacterized protein OS=Brassica rap... 504 e-140
M0T0M2_MUSAM (tr|M0T0M2) Uncharacterized protein OS=Musa acumina... 500 e-139
D7KVW3_ARALL (tr|D7KVW3) Putative uncharacterized protein OS=Ara... 497 e-138
R0HTT9_9BRAS (tr|R0HTT9) Uncharacterized protein OS=Capsella rub... 467 e-129
K3YHF2_SETIT (tr|K3YHF2) Uncharacterized protein OS=Setaria ital... 446 e-123
A3BUX1_ORYSJ (tr|A3BUX1) Putative uncharacterized protein OS=Ory... 442 e-122
A2YX47_ORYSI (tr|A2YX47) Putative uncharacterized protein OS=Ory... 442 e-122
K7U1X9_MAIZE (tr|K7U1X9) Uncharacterized protein OS=Zea mays GN=... 442 e-121
I1I8M9_BRADI (tr|I1I8M9) Uncharacterized protein OS=Brachypodium... 439 e-121
I1QK84_ORYGL (tr|I1QK84) Uncharacterized protein OS=Oryza glaber... 434 e-119
M0ZA50_HORVD (tr|M0ZA50) Uncharacterized protein OS=Hordeum vulg... 385 e-104
F2D071_HORVD (tr|F2D071) Predicted protein (Fragment) OS=Hordeum... 385 e-104
J3MUH2_ORYBR (tr|J3MUH2) Uncharacterized protein OS=Oryza brachy... 382 e-103
M0ZA48_HORVD (tr|M0ZA48) Uncharacterized protein OS=Hordeum vulg... 381 e-103
K7UC97_MAIZE (tr|K7UC97) Uncharacterized protein OS=Zea mays GN=... 375 e-101
M8BA18_AEGTA (tr|M8BA18) RNA pseudourine synthase 3, mitochondri... 365 1e-98
C5YIB1_SORBI (tr|C5YIB1) Putative uncharacterized protein Sb07g0... 350 4e-94
M8A4M3_TRIUA (tr|M8A4M3) RNA pseudourine synthase 3, mitochondri... 348 2e-93
M0ZA55_HORVD (tr|M0ZA55) Uncharacterized protein OS=Hordeum vulg... 240 6e-61
M5VIW4_PRUPE (tr|M5VIW4) Uncharacterized protein OS=Prunus persi... 240 7e-61
M5VVR6_PRUPE (tr|M5VVR6) Uncharacterized protein OS=Prunus persi... 234 5e-59
I1IIQ2_BRADI (tr|I1IIQ2) Uncharacterized protein OS=Brachypodium... 233 1e-58
D7UBZ2_VITVI (tr|D7UBZ2) Putative uncharacterized protein OS=Vit... 233 1e-58
M0ZA54_HORVD (tr|M0ZA54) Uncharacterized protein OS=Hordeum vulg... 232 1e-58
B9RY90_RICCO (tr|B9RY90) Ribosomal pseudouridine synthase, putat... 230 6e-58
C0HH71_MAIZE (tr|C0HH71) Uncharacterized protein OS=Zea mays PE=... 228 2e-57
F2EHA5_HORVD (tr|F2EHA5) Predicted protein OS=Hordeum vulgare va... 225 2e-56
M7YVT4_TRIUA (tr|M7YVT4) RNA pseudourine synthase 4, mitochondri... 224 3e-56
B9G227_ORYSJ (tr|B9G227) Putative uncharacterized protein OS=Ory... 224 6e-56
B8BCS6_ORYSI (tr|B8BCS6) Putative uncharacterized protein OS=Ory... 223 7e-56
M8ARA9_AEGTA (tr|M8ARA9) RNA pseudourine synthase 4, mitochondri... 223 7e-56
I1QLT5_ORYGL (tr|I1QLT5) Uncharacterized protein OS=Oryza glaber... 223 1e-55
G7ZV99_MEDTR (tr|G7ZV99) RNA pseudourine synthase OS=Medicago tr... 221 3e-55
K4B2X4_SOLLC (tr|K4B2X4) Uncharacterized protein OS=Solanum lyco... 220 7e-55
B6U2M4_MAIZE (tr|B6U2M4) RNA binding protein OS=Zea mays PE=2 SV=1 220 8e-55
M1CF70_SOLTU (tr|M1CF70) Uncharacterized protein OS=Solanum tube... 218 2e-54
K3YR11_SETIT (tr|K3YR11) Uncharacterized protein OS=Setaria ital... 216 2e-53
B9HS61_POPTR (tr|B9HS61) Predicted protein (Fragment) OS=Populus... 214 6e-53
I1JB03_SOYBN (tr|I1JB03) Uncharacterized protein OS=Glycine max ... 211 4e-52
J3LQB7_ORYBR (tr|J3LQB7) Uncharacterized protein OS=Oryza brachy... 209 1e-51
J3MVI1_ORYBR (tr|J3MVI1) Uncharacterized protein OS=Oryza brachy... 209 2e-51
M0SLI3_MUSAM (tr|M0SLI3) Uncharacterized protein OS=Musa acumina... 209 2e-51
M4E0X7_BRARP (tr|M4E0X7) Uncharacterized protein OS=Brassica rap... 202 1e-49
D8SN49_SELML (tr|D8SN49) Putative uncharacterized protein OS=Sel... 200 7e-49
D8SR68_SELML (tr|D8SR68) Putative uncharacterized protein OS=Sel... 200 9e-49
R0HY69_9BRAS (tr|R0HY69) Uncharacterized protein OS=Capsella rub... 199 1e-48
D7L9Z2_ARALL (tr|D7L9Z2) Pseudouridine synthase family protein O... 197 7e-48
A9RZN1_PHYPA (tr|A9RZN1) Predicted protein (Fragment) OS=Physcom... 189 1e-45
M0W6Q6_HORVD (tr|M0W6Q6) Uncharacterized protein OS=Hordeum vulg... 188 3e-45
B9N0H4_POPTR (tr|B9N0H4) Predicted protein (Fragment) OS=Populus... 165 2e-38
C4J8T2_MAIZE (tr|C4J8T2) Uncharacterized protein OS=Zea mays PE=... 163 1e-37
M0W6Q7_HORVD (tr|M0W6Q7) Uncharacterized protein OS=Hordeum vulg... 160 1e-36
K4A221_SETIT (tr|K4A221) Uncharacterized protein OS=Setaria ital... 151 3e-34
F4QCT4_DICFS (tr|F4QCT4) Putative ribosomal large subunit pseudo... 145 2e-32
M1CF74_SOLTU (tr|M1CF74) Uncharacterized protein OS=Solanum tube... 142 2e-31
R5Q5J4_9PROT (tr|R5Q5J4) Pseudouridine synthase OS=Acetobacter s... 139 2e-30
Q2G4F0_NOVAD (tr|Q2G4F0) Pseudouridine synthase OS=Novosphingobi... 138 4e-30
N1MWV4_9SPHN (tr|N1MWV4) Ribosomal large subunit pseudouridine s... 137 8e-30
D3BJX8_POLPA (tr|D3BJX8) Probable ribosomal large subunit pseudo... 136 2e-29
M1B240_SOLTU (tr|M1B240) Uncharacterized protein OS=Solanum tube... 135 2e-29
F1ZBM1_9SPHN (tr|F1ZBM1) Pseudouridine synthase OS=Novosphingobi... 134 5e-29
Q1NAE1_9SPHN (tr|Q1NAE1) Pseudouridine synthase (Fragment) OS=Sp... 134 7e-29
A5PEL5_9SPHN (tr|A5PEL5) Pseudouridine synthase OS=Erythrobacter... 133 1e-28
K9CV77_SPHYA (tr|K9CV77) Pseudouridine synthase OS=Sphingobium y... 133 1e-28
M0ZA56_HORVD (tr|M0ZA56) Uncharacterized protein OS=Hordeum vulg... 133 1e-28
I5B9D0_9SPHN (tr|I5B9D0) Pseudouridine synthase OS=Sphingobium i... 132 2e-28
D4Z192_SPHJU (tr|D4Z192) Pseudouridine synthase OS=Sphingobium j... 132 3e-28
J2L5B4_9SPHN (tr|J2L5B4) Pseudouridine synthase (Precursor) OS=S... 131 4e-28
A9HLV5_GLUDA (tr|A9HLV5) Pseudouridine synthase OS=Gluconacetoba... 131 4e-28
G9ZW07_9PROT (tr|G9ZW07) Pseudouridine synthase OS=Acetobacterac... 130 6e-28
K5YQS6_9PROT (tr|K5YQS6) Pseudouridine synthase OS=Acidocella sp... 130 7e-28
F6EVJ0_SPHCR (tr|F6EVJ0) Pseudouridine synthase OS=Sphingobium c... 130 8e-28
F0ZT35_DICPU (tr|F0ZT35) Putative uncharacterized protein OS=Dic... 130 8e-28
Q2RQY9_RHORT (tr|Q2RQY9) Pseudouridine synthase OS=Rhodospirillu... 130 1e-27
G2T6N7_RHORU (tr|G2T6N7) Pseudouridine synthase OS=Rhodospirillu... 130 1e-27
H8FNW9_RHOMO (tr|H8FNW9) Pseudouridine synthase OS=Phaeospirillu... 129 1e-27
Q2ND80_ERYLH (tr|Q2ND80) Pseudouridine synthase OS=Erythrobacter... 129 1e-27
I6YQY2_ZYMMB (tr|I6YQY2) Pseudouridine synthase OS=Zymomonas mob... 129 2e-27
M0W6Q5_HORVD (tr|M0W6Q5) Uncharacterized protein OS=Hordeum vulg... 128 3e-27
F3X0E4_9SPHN (tr|F3X0E4) Pseudouridine synthase OS=Sphingomonas ... 128 3e-27
Q5NQE2_ZYMMO (tr|Q5NQE2) Pseudouridine synthase OS=Zymomonas mob... 128 4e-27
F8DT78_ZYMMA (tr|F8DT78) Pseudouridine synthase OS=Zymomonas mob... 128 4e-27
C8WCB9_ZYMMN (tr|C8WCB9) Pseudouridine synthase OS=Zymomonas mob... 128 4e-27
Q1GRB1_SPHAL (tr|Q1GRB1) Pseudouridine synthase OS=Sphingopyxis ... 128 4e-27
H6SNP0_RHOPH (tr|H6SNP0) Pseudouridine synthase OS=Rhodospirillu... 128 4e-27
M4S031_9SPHN (tr|M4S031) Ribosomal large subunit pseudouridine s... 128 5e-27
M2S9R0_9PROT (tr|M2S9R0) Pseudouridine synthase OS=alpha proteob... 127 5e-27
Q54N28_DICDI (tr|Q54N28) Putative uncharacterized protein OS=Dic... 127 6e-27
B6AVG3_9RHOB (tr|B6AVG3) Pseudouridine synthase OS=Rhodobacterac... 127 8e-27
I9WEI4_9SPHN (tr|I9WEI4) Pseudouridine synthase OS=Novosphingobi... 127 1e-26
F8ES98_ZYMMT (tr|F8ES98) Pseudouridine synthase OS=Zymomonas mob... 126 1e-26
F3SAS2_9PROT (tr|F3SAS2) Pseudouridine synthase OS=Gluconacetoba... 126 1e-26
B7RL95_9RHOB (tr|B7RL95) Pseudouridine synthase OS=Roseobacter s... 126 2e-26
G7LDD6_MEDTR (tr|G7LDD6) Pentatricopeptide repeat-containing pro... 125 2e-26
D5RQH5_9PROT (tr|D5RQH5) Pseudouridine synthase OS=Roseomonas ce... 125 2e-26
D5QCH7_GLUHA (tr|D5QCH7) Pseudouridine synthase OS=Gluconacetoba... 125 4e-26
G2I1W0_GLUXN (tr|G2I1W0) Pseudouridine synthase OS=Gluconacetoba... 124 4e-26
G8ALK2_AZOBR (tr|G8ALK2) Pseudouridine synthase OS=Azospirillum ... 124 4e-26
A9DCN2_9RHIZ (tr|A9DCN2) Pseudouridine synthase OS=Hoeflea photo... 124 4e-26
A6U892_SINMW (tr|A6U892) Pseudouridine synthase OS=Sinorhizobium... 124 5e-26
A5V9V0_SPHWW (tr|A5V9V0) Pseudouridine synthase OS=Sphingomonas ... 124 6e-26
J8VB27_9SPHN (tr|J8VB27) Pseudouridine synthase OS=Sphingomonas ... 124 6e-26
F6IMX3_9SPHN (tr|F6IMX3) Pseudouridine synthase OS=Novosphingobi... 124 7e-26
L8GW82_ACACA (tr|L8GW82) RNA pseudouridine synthase, putative OS... 124 7e-26
Q0ANT2_MARMM (tr|Q0ANT2) Pseudouridine synthase OS=Maricaulis ma... 124 9e-26
A3WAF6_9SPHN (tr|A3WAF6) Pseudouridine synthase OS=Erythrobacter... 123 1e-25
F7VAX9_9PROT (tr|F7VAX9) Pseudouridine synthase OS=Acetobacter t... 123 1e-25
K2ETA0_9BACT (tr|K2ETA0) Pseudouridine synthase OS=uncultured ba... 122 2e-25
J2GEH1_9SPHN (tr|J2GEH1) Pseudouridine synthase OS=Novosphingobi... 122 2e-25
K2L0I4_9PROT (tr|K2L0I4) Pseudouridine synthase OS=Thalassospira... 122 2e-25
M2ZU75_9PROT (tr|M2ZU75) Pseudouridine synthase OS=Magnetospiril... 122 2e-25
K9HFR5_9PROT (tr|K9HFR5) Pseudouridine synthase OS=Caenispirillu... 122 3e-25
A3JN53_9RHOB (tr|A3JN53) Pseudouridine synthase OS=Rhodobacterac... 122 3e-25
M9RH75_9RHOB (tr|M9RH75) Ribosomal large subunit pseudouridine s... 121 3e-25
H1UGA7_ACEPA (tr|H1UGA7) Pseudouridine synthase OS=Acetobacter p... 121 4e-25
K2L815_9PROT (tr|K2L815) Pseudouridine synthase OS=Thalassospira... 121 4e-25
H1UQ66_ACEPA (tr|H1UQ66) Pseudouridine synthase OS=Acetobacter p... 121 4e-25
F8JIE9_HYPSM (tr|F8JIE9) Pseudouridine synthase OS=Hyphomicrobiu... 121 4e-25
A3SSY4_9RHOB (tr|A3SSY4) Pseudouridine synthase OS=Sulfitobacter... 121 5e-25
A3S822_9RHOB (tr|A3S822) Pseudouridine synthase OS=Sulfitobacter... 121 5e-25
M1CF72_SOLTU (tr|M1CF72) Uncharacterized protein OS=Solanum tube... 121 5e-25
Q0BUM2_GRABC (tr|Q0BUM2) Pseudouridine synthase OS=Granulibacter... 121 5e-25
Q92QE2_RHIME (tr|Q92QE2) Pseudouridine synthase OS=Rhizobium mel... 121 5e-25
F7X279_SINMM (tr|F7X279) Pseudouridine synthase OS=Sinorhizobium... 121 5e-25
F6DXF2_SINMK (tr|F6DXF2) Pseudouridine synthase OS=Sinorhizobium... 121 5e-25
F6BVU8_SINMB (tr|F6BVU8) Pseudouridine synthase OS=Sinorhizobium... 121 5e-25
M4N0A3_RHIML (tr|M4N0A3) Putative ribosomal large subunit pseudo... 121 5e-25
M4IA60_RHIML (tr|M4IA60) Pseudouridine synthase, RluA family OS=... 121 5e-25
K0PAA9_RHIML (tr|K0PAA9) Pseudouridine synthase OS=Sinorhizobium... 121 5e-25
H0GB97_RHIML (tr|H0GB97) Pseudouridine synthase OS=Sinorhizobium... 121 5e-25
A3VYV2_9RHOB (tr|A3VYV2) Pseudouridine synthase OS=Roseovarius s... 120 6e-25
A3PGP1_RHOS1 (tr|A3PGP1) Pseudouridine synthase OS=Rhodobacter s... 120 7e-25
F1YTQ1_9PROT (tr|F1YTQ1) Pseudouridine synthase OS=Acetobacter p... 120 7e-25
D5AM27_RHOCB (tr|D5AM27) Pseudouridine synthase OS=Rhodobacter c... 120 9e-25
C7JBV6_ACEP3 (tr|C7JBV6) Pseudouridine synthase OS=Acetobacter p... 120 1e-24
C7L3T3_ACEPA (tr|C7L3T3) Pseudouridine synthase OS=Acetobacter p... 120 1e-24
C7KU06_ACEPA (tr|C7KU06) Pseudouridine synthase OS=Acetobacter p... 120 1e-24
C7KJP4_ACEPA (tr|C7KJP4) Pseudouridine synthase OS=Acetobacter p... 120 1e-24
C7KHV5_ACEPA (tr|C7KHV5) Pseudouridine synthase OS=Acetobacter p... 120 1e-24
C7K8N6_ACEPA (tr|C7K8N6) Pseudouridine synthase OS=Acetobacter p... 120 1e-24
C7JYE2_ACEPA (tr|C7JYE2) Pseudouridine synthase OS=Acetobacter p... 120 1e-24
C7JP76_ACEPA (tr|C7JP76) Pseudouridine synthase OS=Acetobacter p... 120 1e-24
D8JXU8_HYPDA (tr|D8JXU8) Pseudouridine synthase OS=Hyphomicrobiu... 120 1e-24
A4WVH9_RHOS5 (tr|A4WVH9) Pseudouridine synthase OS=Rhodobacter s... 120 1e-24
A8TZH4_9PROT (tr|A8TZH4) Pseudouridine synthase OS=alpha proteob... 119 1e-24
B9NL86_9RHOB (tr|B9NL86) Pseudouridine synthase OS=Rhodobacterac... 119 1e-24
N0B298_9RHIZ (tr|N0B298) Pseudouridine synthase OS=Hyphomicrobiu... 119 2e-24
G8PPD8_PSEUV (tr|G8PPD8) Pseudouridine synthase OS=Pseudovibrio ... 119 2e-24
K0W3Q9_9RHIZ (tr|K0W3Q9) Pseudouridine synthase OS=Rhizobium sp.... 119 2e-24
G6XFU2_9PROT (tr|G6XFU2) Pseudouridine synthase OS=Gluconobacter... 119 2e-24
A3VF99_9RHOB (tr|A3VF99) Pseudouridine synthase OS=Maritimibacte... 119 2e-24
B3PP13_RHIE6 (tr|B3PP13) Pseudouridine synthase OS=Rhizobium etl... 119 2e-24
Q2CBL6_9RHOB (tr|Q2CBL6) Pseudouridine synthase OS=Oceanicola gr... 119 2e-24
A6E221_9RHOB (tr|A6E221) Pseudouridine synthase OS=Roseovarius s... 119 2e-24
M9M9I1_GLUTH (tr|M9M9I1) Ribosomal large subunit pseudouridine s... 119 2e-24
K7SSU6_GLUOY (tr|K7SSU6) Pseudouridine synthase OS=Gluconobacter... 119 2e-24
G2IKM1_9SPHN (tr|G2IKM1) Pseudouridine synthase OS=Sphingobium s... 118 3e-24
F2ABP2_RHIET (tr|F2ABP2) Pseudouridine synthase OS=Rhizobium etl... 118 3e-24
D0CUP1_9RHOB (tr|D0CUP1) Pseudouridine synthase OS=Silicibacter ... 118 3e-24
B6R0Y5_9RHOB (tr|B6R0Y5) Pseudouridine synthase OS=Pseudovibrio ... 118 3e-24
C6AYR2_RHILS (tr|C6AYR2) Pseudouridine synthase OS=Rhizobium leg... 118 3e-24
F2IUX2_POLGS (tr|F2IUX2) Pseudouridine synthase OS=Polymorphum g... 118 4e-24
A7HWU2_PARL1 (tr|A7HWU2) Pseudouridine synthase OS=Parvibaculum ... 118 4e-24
I5BUQ9_9RHIZ (tr|I5BUQ9) Pseudouridine synthase OS=Nitratireduct... 118 4e-24
Q1MG68_RHIL3 (tr|Q1MG68) Pseudouridine synthase OS=Rhizobium leg... 118 4e-24
J6DQG0_9RHIZ (tr|J6DQG0) Pseudouridine synthase OS=Rhizobium sp.... 118 4e-24
L1KA22_9RHOB (tr|L1KA22) Pseudouridine synthase OS=Rhodobacter s... 118 5e-24
B9KLC1_RHOSK (tr|B9KLC1) Pseudouridine synthase OS=Rhodobacter s... 117 5e-24
Q3J5P2_RHOS4 (tr|Q3J5P2) Pseudouridine synthase OS=Rhodobacter s... 117 6e-24
F5M4H2_RHOSH (tr|F5M4H2) Pseudouridine synthase OS=Rhodobacter s... 117 6e-24
I9N9T6_RHILT (tr|I9N9T6) Pseudouridine synthase OS=Rhizobium leg... 117 6e-24
N9VZD3_9SPHN (tr|N9VZD3) Pseudouridine synthase RluD OS=Sphingop... 117 7e-24
R6ISM3_9PROT (tr|R6ISM3) Pseudouridine synthase OS=Azospirillum ... 117 7e-24
L0NE95_RHISP (tr|L0NE95) Pseudouridine synthase OS=Rhizobium sp.... 117 9e-24
Q5FQE0_GLUOX (tr|Q5FQE0) Pseudouridine synthase OS=Gluconobacter... 117 9e-24
B5ZQP1_RHILW (tr|B5ZQP1) Pseudouridine synthase OS=Rhizobium leg... 117 9e-24
I9N768_RHILT (tr|I9N768) Pseudouridine synthase OS=Rhizobium leg... 117 9e-24
Q0G6Y2_9RHIZ (tr|Q0G6Y2) Pseudouridine synthase OS=Fulvimarina p... 117 9e-24
K2AEW3_9BACT (tr|K2AEW3) Pseudouridine synthase OS=uncultured ba... 117 1e-23
J0JQP2_RHILV (tr|J0JQP2) Pseudouridine synthase OS=Rhizobium leg... 116 1e-23
J2KV74_9RHIZ (tr|J2KV74) Pseudouridine synthase OS=Rhizobium sp.... 116 1e-23
A4U0J7_9PROT (tr|A4U0J7) Pseudouridine synthase OS=Magnetospiril... 116 2e-23
A6FLR0_9RHOB (tr|A6FLR0) Pseudouridine synthase OS=Roseobacter s... 116 2e-23
E0MJS5_9RHOB (tr|E0MJS5) Pseudouridine synthase OS=Ahrensia sp. ... 116 2e-23
Q0FIH4_9RHOB (tr|Q0FIH4) Pseudouridine synthase OS=Pelagibaca be... 116 2e-23
J0VKL5_RHILT (tr|J0VKL5) Pseudouridine synthase OS=Rhizobium leg... 115 2e-23
B9QXV5_9RHOB (tr|B9QXV5) Pseudouridine synthase OS=Labrenzia ale... 115 2e-23
J2INJ7_9RHIZ (tr|J2INJ7) Pseudouridine synthase OS=Rhizobium sp.... 115 2e-23
B7QX41_9RHOB (tr|B7QX41) Pseudouridine synthase OS=Ruegeria sp. ... 115 2e-23
J0C8S3_RHILT (tr|J0C8S3) Pseudouridine synthase OS=Rhizobium leg... 115 2e-23
M2X6B1_GALSU (tr|M2X6B1) Ribosomal large subunit pseudouridine s... 115 2e-23
J1JYE3_9RHIZ (tr|J1JYE3) Pseudouridine synthase OS=Bartonella me... 115 4e-23
L1QJR9_BREDI (tr|L1QJR9) Pseudouridine synthase OS=Brevundimonas... 114 4e-23
Q2K820_RHIEC (tr|Q2K820) Pseudouridine synthase OS=Rhizobium etl... 114 4e-23
A0NWE6_9RHOB (tr|A0NWE6) Pseudouridine synthase OS=Labrenzia agg... 114 5e-23
E8RTG1_ASTEC (tr|E8RTG1) Pseudouridine synthase OS=Asticcacaulis... 114 5e-23
G7Z8U5_AZOL4 (tr|G7Z8U5) Pseudouridine synthase OS=Azospirillum ... 114 6e-23
D3NWH6_AZOS1 (tr|D3NWH6) Pseudouridine synthase OS=Azospirillum ... 114 6e-23
I7DTR0_PHAG2 (tr|I7DTR0) Pseudouridine synthase OS=Phaeobacter g... 114 6e-23
A4EN86_9RHOB (tr|A4EN86) Pseudouridine synthase OS=Roseobacter s... 114 7e-23
N6VLC0_9RHIZ (tr|N6VLC0) Ribosomal large subunit pseudouridine s... 114 7e-23
I1ASF0_9RHOB (tr|I1ASF0) Pseudouridine synthase OS=Citreicella s... 114 7e-23
I7EII9_PHAGD (tr|I7EII9) Pseudouridine synthase OS=Phaeobacter g... 114 7e-23
K2LKW2_9RHIZ (tr|K2LKW2) Pseudouridine synthase OS=Nitratireduct... 114 9e-23
E2CP16_9RHOB (tr|E2CP16) Pseudouridine synthase OS=Roseibium sp.... 114 9e-23
H0RP78_9BRAD (tr|H0RP78) Pseudouridine synthase OS=Bradyrhizobiu... 113 9e-23
A8LM87_DINSH (tr|A8LM87) Pseudouridine synthase OS=Dinoroseobact... 113 1e-22
I3X7X7_RHIFR (tr|I3X7X7) Pseudouridine synthase OS=Sinorhizobium... 113 1e-22
G7D531_BRAJP (tr|G7D531) Pseudouridine synthase OS=Bradyrhizobiu... 113 1e-22
H0HVD7_9RHIZ (tr|H0HVD7) Pseudouridine synthase OS=Mesorhizobium... 113 1e-22
G1Y4E3_9PROT (tr|G1Y4E3) Pseudouridine synthase OS=Azospirillum ... 113 1e-22
F0J1V0_ACIMA (tr|F0J1V0) Pseudouridine synthase OS=Acidiphilium ... 113 1e-22
A5FUW0_ACICJ (tr|A5FUW0) Pseudouridine synthase OS=Acidiphilium ... 113 1e-22
F7S6D1_9PROT (tr|F7S6D1) Pseudouridine synthase OS=Acidiphilium ... 113 1e-22
G9A4W2_RHIFH (tr|G9A4W2) Pseudouridine synthase OS=Rhizobium fre... 113 1e-22
L0KM91_MESAW (tr|L0KM91) Pseudouridine synthase OS=Mesorhizobium... 113 1e-22
J2WGA5_9RHIZ (tr|J2WGA5) Pseudouridine synthase OS=Rhizobium sp.... 113 1e-22
H0SIR2_9BRAD (tr|H0SIR2) Pseudouridine synthase OS=Bradyrhizobiu... 113 1e-22
B9JFK3_AGRRK (tr|B9JFK3) Pseudouridine synthase OS=Agrobacterium... 113 1e-22
F4QZF1_BREDI (tr|F4QZF1) Pseudouridine synthase OS=Brevundimonas... 113 1e-22
E6YZV3_BARSR (tr|E6YZV3) Pseudouridine synthase OS=Bartonella sc... 113 1e-22
A4YWT8_BRASO (tr|A4YWT8) Pseudouridine synthase OS=Bradyrhizobiu... 113 1e-22
D0D5C9_9RHOB (tr|D0D5C9) Pseudouridine synthase OS=Citreicella s... 113 2e-22
Q0FAA8_9RHOB (tr|Q0FAA8) Pseudouridine synthase OS=Rhodobacteral... 112 2e-22
K0PPF8_9RHIZ (tr|K0PPF8) Pseudouridine synthase OS=Rhizobium mes... 112 2e-22
A1USS6_BARBK (tr|A1USS6) Pseudouridine synthase OS=Bartonella ba... 112 2e-22
K8Q0Q8_BARBA (tr|K8Q0Q8) Pseudouridine synthase OS=Bartonella ba... 112 2e-22
A5ELJ1_BRASB (tr|A5ELJ1) Pseudouridine synthase OS=Bradyrhizobiu... 112 2e-22
I2QTC4_9BRAD (tr|I2QTC4) Pseudouridine synthase OS=Bradyrhizobiu... 112 2e-22
G3W2E2_SARHA (tr|G3W2E2) Uncharacterized protein (Fragment) OS=S... 112 3e-22
A3UD63_9RHOB (tr|A3UD63) Pseudouridine synthase OS=Oceanicaulis ... 112 3e-22
G4RC09_PELHB (tr|G4RC09) Pseudouridine synthase OS=Pelagibacteri... 112 3e-22
H5YJI6_9BRAD (tr|H5YJI6) Pseudouridine synthase OS=Bradyrhizobiu... 112 3e-22
K2Q8G0_9RHIZ (tr|K2Q8G0) Pseudouridine synthase OS=Agrobacterium... 112 3e-22
Q1YNH2_MOBAS (tr|Q1YNH2) Pseudouridine synthase OS=Manganese-oxi... 112 3e-22
L0LMG9_RHITR (tr|L0LMG9) Pseudouridine synthase OS=Rhizobium tro... 112 3e-22
C3MB12_RHISN (tr|C3MB12) Pseudouridine synthase OS=Rhizobium sp.... 112 3e-22
R5YM70_9PROT (tr|R5YM70) Pseudouridine synthase OS=Acetobacter s... 111 4e-22
C6XLD6_HIRBI (tr|C6XLD6) Pseudouridine synthase OS=Hirschia balt... 111 4e-22
B4WEA2_9CAUL (tr|B4WEA2) Pseudouridine synthase OS=Brevundimonas... 111 4e-22
J2HFJ7_9RHIZ (tr|J2HFJ7) Pseudouridine synthase OS=Rhizobium sp.... 111 4e-22
A3SK10_9RHOB (tr|A3SK10) Pseudouridine synthase OS=Roseovarius n... 111 4e-22
M5F8G2_9RHIZ (tr|M5F8G2) Pseudouridine synthase OS=Mesorhizobium... 111 4e-22
I0G5T6_9BRAD (tr|I0G5T6) Pseudouridine synthase OS=Bradyrhizobiu... 111 5e-22
R0D3H4_CAUCE (tr|R0D3H4) Ribosomal large subunit pseudouridine s... 111 5e-22
Q89JB7_BRAJA (tr|Q89JB7) Pseudouridine synthase OS=Bradyrhizobiu... 111 6e-22
H0T8P0_9BRAD (tr|H0T8P0) Pseudouridine synthase OS=Bradyrhizobiu... 111 6e-22
B8IK79_METNO (tr|B8IK79) Pseudouridine synthase OS=Methylobacter... 110 6e-22
D9QGP9_BRESC (tr|D9QGP9) Pseudouridine synthase OS=Brevundimonas... 110 7e-22
K9HF45_9PROT (tr|K9HF45) Pseudouridine synthase OS=Caenispirillu... 110 7e-22
K2MYI4_9RHIZ (tr|K2MYI4) Pseudouridine synthase OS=Nitratireduct... 110 7e-22
Q7CZ66_AGRT5 (tr|Q7CZ66) Pseudouridine synthase OS=Agrobacterium... 110 8e-22
M1NYV8_BARAA (tr|M1NYV8) Pseudouridine synthase OS=Bartonella au... 110 8e-22
K4HJ60_BARQI (tr|K4HJ60) Pseudouridine synthase OS=Bartonella qu... 110 8e-22
J2W6W7_9BRAD (tr|J2W6W7) Pseudouridine synthase OS=Bradyrhizobiu... 110 9e-22
D2VTC2_NAEGR (tr|D2VTC2) Predicted protein OS=Naegleria gruberi ... 110 9e-22
F5JH63_9RHIZ (tr|F5JH63) Pseudouridine synthase OS=Agrobacterium... 110 9e-22
E8TMF5_MESCW (tr|E8TMF5) Pseudouridine synthase OS=Mesorhizobium... 110 1e-21
G6YI54_9RHIZ (tr|G6YI54) Pseudouridine synthase OS=Mesorhizobium... 110 1e-21
F7U9Z4_RHIRD (tr|F7U9Z4) Pseudouridine synthase OS=Agrobacterium... 110 1e-21
I3TNV3_TISMK (tr|I3TNV3) Ribosomal large subunit pseudouridine s... 110 1e-21
Q5LW27_RUEPO (tr|Q5LW27) Pseudouridine synthase OS=Ruegeria pome... 110 1e-21
Q98N25_RHILO (tr|Q98N25) Pseudouridine synthase OS=Rhizobium lot... 110 1e-21
M0ZA53_HORVD (tr|M0ZA53) Uncharacterized protein OS=Hordeum vulg... 110 1e-21
E1BYI6_CHICK (tr|E1BYI6) Uncharacterized protein OS=Gallus gallu... 110 1e-21
I4YWD7_9RHIZ (tr|I4YWD7) Pseudouridine synthase OS=Microvirga sp... 110 1e-21
D5VG19_CAUST (tr|D5VG19) Pseudouridine synthase OS=Caulobacter s... 110 1e-21
B0U937_METS4 (tr|B0U937) Pseudouridine synthase OS=Methylobacter... 109 1e-21
E3I8F8_RHOVT (tr|E3I8F8) Pseudouridine synthase, RluA family OS=... 109 1e-21
K2JRC3_9RHOB (tr|K2JRC3) Pseudouridine synthase OS=Celeribacter ... 109 1e-21
F0L3T5_AGRSH (tr|F0L3T5) Pseudouridine synthase OS=Agrobacterium... 109 1e-21
H0H5P0_RHIRD (tr|H0H5P0) Pseudouridine synthase OS=Agrobacterium... 109 1e-21
Q6FZF3_BARQU (tr|Q6FZF3) Pseudouridine synthase OS=Bartonella qu... 109 2e-21
J0GNJ2_RHILV (tr|J0GNJ2) Pseudouridine synthase OS=Rhizobium leg... 109 2e-21
C6AE97_BARGA (tr|C6AE97) Pseudouridine synthase OS=Bartonella gr... 109 2e-21
Q9A6V3_CAUCR (tr|Q9A6V3) Pseudouridine synthase OS=Caulobacter c... 109 2e-21
B8GX34_CAUCN (tr|B8GX34) Pseudouridine synthase OS=Caulobacter c... 109 2e-21
N7QGF4_BRUSS (tr|N7QGF4) RluA family pseudouridine synthase OS=B... 109 2e-21
N8G2A5_9RHIZ (tr|N8G2A5) RluA family pseudouridine synthase OS=B... 109 2e-21
M5ERW2_9RHIZ (tr|M5ERW2) Pseudouridine synthase OS=Mesorhizobium... 109 2e-21
A3V4J4_9RHOB (tr|A3V4J4) Pseudouridine synthase OS=Loktanella ve... 109 2e-21
J0R821_9RHIZ (tr|J0R821) Pseudouridine synthase OS=Bartonella ta... 109 2e-21
J0R0D5_9RHIZ (tr|J0R0D5) Pseudouridine synthase OS=Bartonella ta... 109 2e-21
C8S4Y4_9RHOB (tr|C8S4Y4) Pseudouridine synthase OS=Rhodobacter s... 109 2e-21
D6LPU2_9RHIZ (tr|D6LPU2) Pseudouridine synthase OS=Brucella sp. ... 109 2e-21
K7G6V4_PELSI (tr|K7G6V4) Uncharacterized protein (Fragment) OS=P... 109 2e-21
B1ZDT3_METPB (tr|B1ZDT3) Pseudouridine synthase OS=Methylobacter... 109 2e-21
K5CVD9_RHILU (tr|K5CVD9) Pseudouridine synthase OS=Rhizobium lup... 108 2e-21
F7YDQ9_MESOW (tr|F7YDQ9) Pseudouridine synthase OS=Mesorhizobium... 108 2e-21
N6UUG3_9RHIZ (tr|N6UUG3) Ribosomal large subunit pseudouridine s... 108 2e-21
A4EPD5_9RHOB (tr|A4EPD5) Pseudouridine synthase OS=Roseobacter s... 108 3e-21
G6XP32_RHIRD (tr|G6XP32) Pseudouridine synthase OS=Agrobacterium... 108 3e-21
B0CGF1_BRUSI (tr|B0CGF1) Pseudouridine synthase OS=Brucella suis... 108 3e-21
N8KWU8_BRUSS (tr|N8KWU8) RluA family pseudouridine synthase OS=B... 108 3e-21
N8KPS0_BRUSS (tr|N8KPS0) RluA family pseudouridine synthase OS=B... 108 3e-21
N8K6Z8_BRUSS (tr|N8K6Z8) RluA family pseudouridine synthase OS=B... 108 3e-21
N8K6N1_BRUSS (tr|N8K6N1) RluA family pseudouridine synthase OS=B... 108 3e-21
N8IS63_BRUSS (tr|N8IS63) RluA family pseudouridine synthase OS=B... 108 3e-21
N8HPX1_BRUSS (tr|N8HPX1) RluA family pseudouridine synthase OS=B... 108 3e-21
N7SI10_BRUSS (tr|N7SI10) RluA family pseudouridine synthase OS=B... 108 3e-21
N7PUZ2_BRUSS (tr|N7PUZ2) RluA family pseudouridine synthase OS=B... 108 3e-21
A5VQE3_BRUO2 (tr|A5VQE3) Pseudouridine synthase OS=Brucella ovis... 108 3e-21
N8PD03_BRUOV (tr|N8PD03) Uncharacterized protein OS=Brucella ovi... 108 3e-21
N8NPE9_BRUOV (tr|N8NPE9) Uncharacterized protein OS=Brucella ovi... 108 3e-21
N8NIG1_BRUOV (tr|N8NIG1) Uncharacterized protein OS=Brucella ovi... 108 3e-21
N8NE07_BRUOV (tr|N8NE07) Uncharacterized protein OS=Brucella ovi... 108 3e-21
N8MRK5_BRUOV (tr|N8MRK5) Uncharacterized protein OS=Brucella ovi... 108 3e-21
N8MPI7_BRUOV (tr|N8MPI7) Uncharacterized protein OS=Brucella ovi... 108 3e-21
N8M4U7_BRUOV (tr|N8M4U7) Uncharacterized protein OS=Brucella ovi... 108 3e-21
N8LIM8_BRUOV (tr|N8LIM8) Uncharacterized protein OS=Brucella ovi... 108 3e-21
N8L2T0_BRUOV (tr|N8L2T0) Uncharacterized protein OS=Brucella ovi... 108 3e-21
N8FN18_BRUOV (tr|N8FN18) RluA family pseudouridine synthase OS=B... 108 3e-21
N8F6J9_BRUOV (tr|N8F6J9) RluA family pseudouridine synthase OS=B... 108 3e-21
N7PMV6_BRUOV (tr|N7PMV6) RluA family pseudouridine synthase OS=B... 108 3e-21
N7NPM8_BRUOV (tr|N7NPM8) RluA family pseudouridine synthase OS=B... 108 3e-21
F2HQT0_BRUMM (tr|F2HQT0) Pseudouridine synthase OS=Brucella meli... 108 4e-21
F2GUX0_BRUM5 (tr|F2GUX0) Pseudouridine synthase OS=Brucella meli... 108 4e-21
N7S430_BRUSS (tr|N7S430) RluA family pseudouridine synthase OS=B... 108 4e-21
N7RWD2_BRUSS (tr|N7RWD2) RluA family pseudouridine synthase OS=B... 108 4e-21
G4PJD4_BRUML (tr|G4PJD4) Pseudouridine synthase OS=Brucella meli... 108 4e-21
A1B058_PARDP (tr|A1B058) Pseudouridine synthase OS=Paracoccus de... 108 4e-21
G8SP86_BRUCA (tr|G8SP86) Pseudouridine synthase OS=Brucella cani... 108 4e-21
A3JXI7_9RHOB (tr|A3JXI7) Pseudouridine synthase OS=Sagittula ste... 108 4e-21
D0PCV9_BRUSS (tr|D0PCV9) Pseudouridine synthase OS=Brucella suis... 108 4e-21
G8T239_BRUAO (tr|G8T239) Pseudouridine synthase OS=Brucella abor... 108 4e-21
D7H3E7_BRUAO (tr|D7H3E7) Pseudouridine synthase OS=Brucella abor... 108 4e-21
C9VSP3_BRUAO (tr|C9VSP3) Pseudouridine synthase OS=Brucella abor... 108 4e-21
C9UY17_BRUAO (tr|C9UY17) Pseudouridine synthase OS=Brucella abor... 108 4e-21
C9UCT8_BRUAO (tr|C9UCT8) Pseudouridine synthase OS=Brucella abor... 108 4e-21
C9U3L5_BRUAO (tr|C9U3L5) Pseudouridine synthase OS=Brucella abor... 108 4e-21
Q6I819_BRUSU (tr|Q6I819) Pseudouridine synthase OS=Brucella suis... 108 4e-21
B1ZI46_METPB (tr|B1ZI46) Pseudouridine synthase OS=Methylobacter... 108 4e-21
N8IGZ2_BRUSS (tr|N8IGZ2) RluA family pseudouridine synthase OS=B... 108 4e-21
N8GMP8_BRUSS (tr|N8GMP8) RluA family pseudouridine synthase OS=B... 108 4e-21
N7RKQ2_BRUSS (tr|N7RKQ2) RluA family pseudouridine synthase OS=B... 108 4e-21
N7PQW0_BRUSS (tr|N7PQW0) RluA family pseudouridine synthase OS=B... 108 4e-21
G8NEH8_BRUSS (tr|G8NEH8) Pseudouridine synthase OS=Brucella suis... 108 4e-21
N8JT46_BRUSS (tr|N8JT46) RluA family pseudouridine synthase OS=B... 108 4e-21
N8JKM7_BRUSS (tr|N8JKM7) RluA family pseudouridine synthase OS=B... 108 4e-21
N8IFS3_BRUSS (tr|N8IFS3) RluA family pseudouridine synthase OS=B... 108 4e-21
N8HUI6_BRUSS (tr|N8HUI6) RluA family pseudouridine synthase OS=B... 108 4e-21
N8AT52_BRUML (tr|N8AT52) RluA family pseudouridine synthase OS=B... 108 4e-21
N7RGV0_BRUSS (tr|N7RGV0) RluA family pseudouridine synthase OS=B... 108 4e-21
M4Z726_9BRAD (tr|M4Z726) Ribosomal large subunit pseudouridine s... 108 4e-21
Q8YH21_BRUME (tr|Q8YH21) Pseudouridine synthase OS=Brucella meli... 108 4e-21
A9MB16_BRUC2 (tr|A9MB16) Pseudouridine synthase OS=Brucella cani... 108 4e-21
N9U452_BRUCA (tr|N9U452) RluA family pseudouridine synthase OS=B... 108 4e-21
N9SBG1_BRUCA (tr|N9SBG1) RluA family pseudouridine synthase OS=B... 108 4e-21
N8GMQ5_BRUSS (tr|N8GMQ5) RluA family pseudouridine synthase OS=B... 108 4e-21
N8BLF8_BRUCA (tr|N8BLF8) RluA family pseudouridine synthase OS=B... 108 4e-21
N7ZWJ1_BRUCA (tr|N7ZWJ1) RluA family pseudouridine synthase OS=B... 108 4e-21
N7KUW6_BRUCA (tr|N7KUW6) RluA family pseudouridine synthase OS=B... 108 4e-21
N7JIF1_BRUCA (tr|N7JIF1) RluA family pseudouridine synthase OS=B... 108 4e-21
D0PJ27_BRUSS (tr|D0PJ27) Pseudouridine synthase OS=Brucella suis... 108 4e-21
D0BBD6_BRUSS (tr|D0BBD6) Pseudouridine synthase OS=Brucella suis... 108 4e-21
C0G693_9RHIZ (tr|C0G693) Pseudouridine synthase OS=Brucella ceti... 108 4e-21
C9TVA3_BRUPB (tr|C9TVA3) Pseudouridine synthase OS=Brucella pinn... 108 4e-21
C7LBU6_BRUMC (tr|C7LBU6) Pseudouridine synthase OS=Brucella micr... 108 4e-21
C0RIX6_BRUMB (tr|C0RIX6) Pseudouridine synthase OS=Brucella meli... 108 4e-21
N8KC49_BRUML (tr|N8KC49) Uncharacterized protein OS=Brucella mel... 108 4e-21
N8JUX3_BRUML (tr|N8JUX3) Uncharacterized protein OS=Brucella mel... 108 4e-21
N8HCJ5_9RHIZ (tr|N8HCJ5) RluA family pseudouridine synthase OS=B... 108 4e-21
N8GZQ7_9RHIZ (tr|N8GZQ7) RluA family pseudouridine synthase OS=B... 108 4e-21
N8GCP1_9RHIZ (tr|N8GCP1) RluA family pseudouridine synthase OS=B... 108 4e-21
N8G5D9_9RHIZ (tr|N8G5D9) RluA family pseudouridine synthase OS=B... 108 4e-21
N8FKH7_9RHIZ (tr|N8FKH7) RluA family pseudouridine synthase OS=B... 108 4e-21
N8F4A3_9RHIZ (tr|N8F4A3) RluA family pseudouridine synthase OS=B... 108 4e-21
N8EPV9_BRUML (tr|N8EPV9) RluA family pseudouridine synthase OS=B... 108 4e-21
N8EFY3_9RHIZ (tr|N8EFY3) RluA family pseudouridine synthase OS=B... 108 4e-21
N8ECK9_BRUML (tr|N8ECK9) RluA family pseudouridine synthase OS=B... 108 4e-21
N8DPH3_BRUML (tr|N8DPH3) RluA family pseudouridine synthase OS=B... 108 4e-21
N8DHB8_BRUML (tr|N8DHB8) RluA family pseudouridine synthase OS=B... 108 4e-21
N8CYL9_BRUML (tr|N8CYL9) RluA family pseudouridine synthase OS=B... 108 4e-21
N8CS65_BRUML (tr|N8CS65) RluA family pseudouridine synthase OS=B... 108 4e-21
N8CQ73_BRUML (tr|N8CQ73) RluA family pseudouridine synthase OS=B... 108 4e-21
N8CF67_BRUML (tr|N8CF67) RluA family pseudouridine synthase OS=B... 108 4e-21
N8CDT1_BRUML (tr|N8CDT1) RluA family pseudouridine synthase OS=B... 108 4e-21
N8BX71_BRUML (tr|N8BX71) RluA family pseudouridine synthase OS=B... 108 4e-21
N8BGF0_BRUML (tr|N8BGF0) RluA family pseudouridine synthase OS=B... 108 4e-21
N8AIF7_BRUML (tr|N8AIF7) RluA family pseudouridine synthase OS=B... 108 4e-21
N7YXG9_BRUAO (tr|N7YXG9) RluA family pseudouridine synthase OS=B... 108 4e-21
N7YP12_BRUAO (tr|N7YP12) RluA family pseudouridine synthase OS=B... 108 4e-21
N7YLB6_BRUAO (tr|N7YLB6) RluA family pseudouridine synthase OS=B... 108 4e-21
N7YET8_BRUAO (tr|N7YET8) RluA family pseudouridine synthase OS=B... 108 4e-21
N7XSU6_BRUAO (tr|N7XSU6) RluA family pseudouridine synthase OS=B... 108 4e-21
N7X4J1_BRUAO (tr|N7X4J1) RluA family pseudouridine synthase OS=B... 108 4e-21
N7X3H0_BRUAO (tr|N7X3H0) RluA family pseudouridine synthase OS=B... 108 4e-21
N7WGU7_BRUAO (tr|N7WGU7) RluA family pseudouridine synthase OS=B... 108 4e-21
N7WDE8_BRUAO (tr|N7WDE8) RluA family pseudouridine synthase OS=B... 108 4e-21
N7WA13_BRUAO (tr|N7WA13) RluA family pseudouridine synthase OS=B... 108 4e-21
N7TQF3_BRUAO (tr|N7TQF3) RluA family pseudouridine synthase OS=B... 108 4e-21
N7PY90_9RHIZ (tr|N7PY90) RluA family pseudouridine synthase OS=B... 108 4e-21
N7PBE0_9RHIZ (tr|N7PBE0) RluA family pseudouridine synthase OS=B... 108 4e-21
N7P0G7_BRUML (tr|N7P0G7) RluA family pseudouridine synthase OS=B... 108 4e-21
N7P079_BRUML (tr|N7P079) RluA family pseudouridine synthase OS=B... 108 4e-21
N7NAK9_BRUML (tr|N7NAK9) RluA family pseudouridine synthase OS=B... 108 4e-21
N7N9L8_BRUML (tr|N7N9L8) RluA family pseudouridine synthase OS=B... 108 4e-21
N7N0Y5_BRUML (tr|N7N0Y5) RluA family pseudouridine synthase OS=B... 108 4e-21
N7M7H2_BRUML (tr|N7M7H2) RluA family pseudouridine synthase OS=B... 108 4e-21
N7LXI8_BRUML (tr|N7LXI8) RluA family pseudouridine synthase OS=B... 108 4e-21
N7LQ09_BRUML (tr|N7LQ09) RluA family pseudouridine synthase OS=B... 108 4e-21
N7LN92_BRUML (tr|N7LN92) RluA family pseudouridine synthase OS=B... 108 4e-21
N7LB51_BRUML (tr|N7LB51) RluA family pseudouridine synthase OS=B... 108 4e-21
N7L377_BRUML (tr|N7L377) RluA family pseudouridine synthase OS=B... 108 4e-21
N7L342_BRUML (tr|N7L342) RluA family pseudouridine synthase OS=B... 108 4e-21
N7KAK0_BRUML (tr|N7KAK0) RluA family pseudouridine synthase OS=B... 108 4e-21
N7G974_BRUAO (tr|N7G974) RluA family pseudouridine synthase OS=B... 108 4e-21
N7B1R9_BRUAO (tr|N7B1R9) RluA family pseudouridine synthase OS=B... 108 4e-21
N7ALE6_BRUAO (tr|N7ALE6) RluA family pseudouridine synthase OS=B... 108 4e-21
E0DVT2_9RHIZ (tr|E0DVT2) Pseudouridine synthase OS=Brucella sp. ... 108 4e-21
E0DKJ8_9RHIZ (tr|E0DKJ8) Pseudouridine synthase OS=Brucella inop... 108 4e-21
D1FFF5_9RHIZ (tr|D1FFF5) Pseudouridine synthase OS=Brucella ceti... 108 4e-21
D1F8P0_BRUML (tr|D1F8P0) Pseudouridine synthase OS=Brucella meli... 108 4e-21
D1EZ39_BRUML (tr|D1EZ39) Pseudouridine synthase OS=Brucella meli... 108 4e-21
D1ESB6_9RHIZ (tr|D1ESB6) Pseudouridine synthase OS=Brucella pinn... 108 4e-21
D1CXW6_9RHIZ (tr|D1CXW6) Pseudouridine synthase OS=Brucella sp. ... 108 4e-21
D0RHI8_9RHIZ (tr|D0RHI8) Pseudouridine synthase OS=Brucella sp. ... 108 4e-21
D0GFE0_BRUML (tr|D0GFE0) Pseudouridine synthase OS=Brucella meli... 108 4e-21
D0B341_BRUME (tr|D0B341) Pseudouridine synthase OS=Brucella meli... 108 4e-21
C9VJI3_9RHIZ (tr|C9VJI3) Pseudouridine synthase OS=Brucella ceti... 108 4e-21
C9UM16_BRUAO (tr|C9UM16) Pseudouridine synthase OS=Brucella abor... 108 4e-21
C9TLX1_9RHIZ (tr|C9TLX1) Pseudouridine synthase OS=Brucella pinn... 108 4e-21
C9TEL2_9RHIZ (tr|C9TEL2) Pseudouridine synthase OS=Brucella ceti... 108 4e-21
C9T682_9RHIZ (tr|C9T682) Pseudouridine synthase OS=Brucella ceti... 108 4e-21
C4IQR9_BRUAO (tr|C4IQR9) Pseudouridine synthase OS=Brucella abor... 108 5e-21
Q57DC9_BRUAB (tr|Q57DC9) Pseudouridine synthase OS=Brucella abor... 108 5e-21
Q2YQ71_BRUA2 (tr|Q2YQ71) Pseudouridine synthase OS=Brucella abor... 108 5e-21
B2S5L2_BRUA1 (tr|B2S5L2) Pseudouridine synthase OS=Brucella abor... 108 5e-21
R8WB50_BRUAO (tr|R8WB50) RluA family pseudouridine synthase OS=B... 108 5e-21
R8W283_BRUAO (tr|R8W283) RluA family pseudouridine synthase OS=B... 108 5e-21
N8LFS6_BRUAO (tr|N8LFS6) RluA family pseudouridine synthase OS=B... 108 5e-21
N8AJ16_BRUAO (tr|N8AJ16) RluA family pseudouridine synthase OS=B... 108 5e-21
N7ZUR3_BRUAO (tr|N7ZUR3) RluA family pseudouridine synthase OS=B... 108 5e-21
N7ZFC4_BRUAO (tr|N7ZFC4) RluA family pseudouridine synthase OS=B... 108 5e-21
N7YYB1_BRUAO (tr|N7YYB1) RluA family pseudouridine synthase OS=B... 108 5e-21
N7YSH7_BRUAO (tr|N7YSH7) RluA family pseudouridine synthase OS=B... 108 5e-21
N7Y3H6_BRUAO (tr|N7Y3H6) RluA family pseudouridine synthase OS=B... 108 5e-21
N7Y1S2_BRUAO (tr|N7Y1S2) RluA family pseudouridine synthase OS=B... 108 5e-21
N7XTS0_BRUAO (tr|N7XTS0) RluA family pseudouridine synthase OS=B... 108 5e-21
N7XP74_BRUAO (tr|N7XP74) RluA family pseudouridine synthase OS=B... 108 5e-21
N7VXB2_BRUAO (tr|N7VXB2) RluA family pseudouridine synthase OS=B... 108 5e-21
N7VXB0_BRUAO (tr|N7VXB0) RluA family pseudouridine synthase OS=B... 108 5e-21
N7V4L5_BRUAO (tr|N7V4L5) RluA family pseudouridine synthase OS=B... 108 5e-21
N7UXZ9_BRUAO (tr|N7UXZ9) RluA family pseudouridine synthase OS=B... 108 5e-21
N7UXC5_BRUAO (tr|N7UXC5) RluA family pseudouridine synthase OS=B... 108 5e-21
N7UIT5_BRUAO (tr|N7UIT5) RluA family pseudouridine synthase OS=B... 108 5e-21
N7UAW4_BRUAO (tr|N7UAW4) RluA family pseudouridine synthase OS=B... 108 5e-21
N7U3L4_BRUAO (tr|N7U3L4) RluA family pseudouridine synthase OS=B... 108 5e-21
N7U0B2_BRUAO (tr|N7U0B2) RluA family pseudouridine synthase OS=B... 108 5e-21
N7TMS5_BRUAO (tr|N7TMS5) RluA family pseudouridine synthase OS=B... 108 5e-21
N7TD83_BRUAO (tr|N7TD83) RluA family pseudouridine synthase OS=B... 108 5e-21
N7T007_BRUAO (tr|N7T007) RluA family pseudouridine synthase OS=B... 108 5e-21
N7SIA2_BRUAO (tr|N7SIA2) RluA family pseudouridine synthase OS=B... 108 5e-21
N7RPW2_BRUAO (tr|N7RPW2) RluA family pseudouridine synthase OS=B... 108 5e-21
N7K265_BRUAO (tr|N7K265) RluA family pseudouridine synthase OS=B... 108 5e-21
N7JU63_BRUAO (tr|N7JU63) RluA family pseudouridine synthase OS=B... 108 5e-21
N7JIG2_BRUAO (tr|N7JIG2) RluA family pseudouridine synthase OS=B... 108 5e-21
N7JAK6_BRUAO (tr|N7JAK6) RluA family pseudouridine synthase OS=B... 108 5e-21
N7J266_BRUAO (tr|N7J266) RluA family pseudouridine synthase OS=B... 108 5e-21
N7ITY8_BRUAO (tr|N7ITY8) RluA family pseudouridine synthase OS=B... 108 5e-21
N7II36_BRUAO (tr|N7II36) RluA family pseudouridine synthase OS=B... 108 5e-21
N7I1B9_BRUAO (tr|N7I1B9) RluA family pseudouridine synthase OS=B... 108 5e-21
N7HSC2_BRUAO (tr|N7HSC2) RluA family pseudouridine synthase OS=B... 108 5e-21
N7HN53_BRUAO (tr|N7HN53) RluA family pseudouridine synthase OS=B... 108 5e-21
N7HAV5_BRUAO (tr|N7HAV5) RluA family pseudouridine synthase OS=B... 108 5e-21
N7H8Z2_BRUAO (tr|N7H8Z2) RluA family pseudouridine synthase OS=B... 108 5e-21
N7H226_BRUAO (tr|N7H226) RluA family pseudouridine synthase OS=B... 108 5e-21
N7H0Q0_BRUAO (tr|N7H0Q0) RluA family pseudouridine synthase OS=B... 108 5e-21
N7GML3_BRUAO (tr|N7GML3) RluA family pseudouridine synthase OS=B... 108 5e-21
N7GI30_BRUAO (tr|N7GI30) RluA family pseudouridine synthase OS=B... 108 5e-21
N7FX52_BRUAO (tr|N7FX52) RluA family pseudouridine synthase OS=B... 108 5e-21
N7FRR7_BRUAO (tr|N7FRR7) RluA family pseudouridine synthase OS=B... 108 5e-21
N7FQQ1_BRUAO (tr|N7FQQ1) RluA family pseudouridine synthase OS=B... 108 5e-21
N7F6J4_BRUAO (tr|N7F6J4) RluA family pseudouridine synthase OS=B... 108 5e-21
N7EIE3_BRUAO (tr|N7EIE3) RluA family pseudouridine synthase OS=B... 108 5e-21
N7E9A0_BRUAO (tr|N7E9A0) RluA family pseudouridine synthase OS=B... 108 5e-21
N7E3Z3_BRUAO (tr|N7E3Z3) RluA family pseudouridine synthase OS=B... 108 5e-21
N7DWZ6_BRUAO (tr|N7DWZ6) RluA family pseudouridine synthase OS=B... 108 5e-21
N7DTS9_BRUAO (tr|N7DTS9) RluA family pseudouridine synthase OS=B... 108 5e-21
N7DD05_BRUAO (tr|N7DD05) RluA family pseudouridine synthase OS=B... 108 5e-21
N7D2M3_BRUAO (tr|N7D2M3) RluA family pseudouridine synthase OS=B... 108 5e-21
N7D0I7_BRUAO (tr|N7D0I7) RluA family pseudouridine synthase OS=B... 108 5e-21
N7CJZ1_BRUAO (tr|N7CJZ1) RluA family pseudouridine synthase OS=B... 108 5e-21
N7CEZ5_BRUAO (tr|N7CEZ5) RluA family pseudouridine synthase OS=B... 108 5e-21
N7CDM4_BRUAO (tr|N7CDM4) RluA family pseudouridine synthase OS=B... 108 5e-21
N7BZI7_BRUAO (tr|N7BZI7) RluA family pseudouridine synthase OS=B... 108 5e-21
N7BST6_BRUAO (tr|N7BST6) RluA family pseudouridine synthase OS=B... 108 5e-21
N7BN62_BRUAO (tr|N7BN62) RluA family pseudouridine synthase OS=B... 108 5e-21
N7B2A4_BRUAO (tr|N7B2A4) RluA family pseudouridine synthase OS=B... 108 5e-21
N7AE85_BRUAO (tr|N7AE85) RluA family pseudouridine synthase OS=B... 108 5e-21
N7A8V5_BRUAO (tr|N7A8V5) RluA family pseudouridine synthase OS=B... 108 5e-21
N6ZMF9_BRUAO (tr|N6ZMF9) RluA family pseudouridine synthase OS=B... 108 5e-21
H3R193_BRUAO (tr|H3R193) Pseudouridine synthase OS=Brucella abor... 108 5e-21
H3QRX6_BRUAO (tr|H3QRX6) Pseudouridine synthase OS=Brucella abor... 108 5e-21
>K7MNI8_SOYBN (tr|K7MNI8) Uncharacterized protein OS=Glycine max PE=4 SV=1
Length = 476
Score = 689 bits (1777), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/387 (86%), Positives = 353/387 (91%), Gaps = 7/387 (1%)
Query: 1 MLNHVSRNNSWSWLSSAVRHYSRIQPPRPVCVEPVIRVSNNIARLDVPKEGPKPRQILSL 60
MLNHVS NNS SWL RHYSRIQPPRPV VEPVI VSNNIARLD PKEGPKPRQ+LSL
Sbjct: 1 MLNHVSNNNSCSWLLFVARHYSRIQPPRPVSVEPVISVSNNIARLDAPKEGPKPRQLLSL 60
Query: 61 PPFPGHPLPGASG----QQRDHVTAVNWIKYYFKGTWGSVIESHFRKGLVQMEDLIAADS 116
PPFPGHPLP S +QRD+VTAVNWIKYYFKGTWGSVIESHFR+GLVQME A DS
Sbjct: 61 PPFPGHPLPDKSSISGSRQRDYVTAVNWIKYYFKGTWGSVIESHFREGLVQME---ADDS 117
Query: 117 FTQKDERMKPMRKMRPNDVMKPGARLHVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQ 176
TQK+E+MKPMRK+RPN+VMK GAR+HVPVS+ ETRISKRYDAIPSGTLYPNADEIKYLQ
Sbjct: 118 STQKEEQMKPMRKIRPNEVMKRGARVHVPVSICETRISKRYDAIPSGTLYPNADEIKYLQ 177
Query: 177 RLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGI 236
RLVIYKDSAIIVLNKPPKLPVKG+LPVHNSMD SYDYDEGPKLVHRLD+ESSGI
Sbjct: 178 RLVIYKDSAIIVLNKPPKLPVKGSLPVHNSMDALAAAALSYDYDEGPKLVHRLDRESSGI 237
Query: 237 LLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPL 296
LL GRTKDSVSHLQWLFSNIN+AKSSCK WN+ACEATYQRYWALVIGTP EKEGIIHAPL
Sbjct: 238 LLLGRTKDSVSHLQWLFSNINNAKSSCKDWNEACEATYQRYWALVIGTPKEKEGIIHAPL 297
Query: 297 SKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHC 356
SKVLLNDGKTER++LAHHS++EPRQEAVTEYRVLGP+INGCSWVELRPLT RKHQLRVHC
Sbjct: 298 SKVLLNDGKTERIILAHHSSVEPRQEAVTEYRVLGPQINGCSWVELRPLTYRKHQLRVHC 357
Query: 357 AEALGTPIVGDYKYGWFVHNRWKQMPR 383
AEALGTPIVGDYKYGWFVH+RWKQMPR
Sbjct: 358 AEALGTPIVGDYKYGWFVHSRWKQMPR 384
>M5WPG3_PRUPE (tr|M5WPG3) Uncharacterized protein OS=Prunus persica
GN=PRUPE_ppa005240mg PE=4 SV=1
Length = 471
Score = 539 bits (1389), Expect = e-151, Method: Compositional matrix adjust.
Identities = 258/369 (69%), Positives = 305/369 (82%), Gaps = 7/369 (1%)
Query: 17 AVRHYSRIQPPRPVCVEPVIRVSNNIARLDVPKEGPKPRQILSLPPFPGHPLPGA---SG 73
A R YSR+ PP P+IRVSN++ARL PKEGPKPRQ+LSLPPFPGHPLPG G
Sbjct: 14 ARREYSRVCPPPAKSAGPLIRVSNHVARLGPPKEGPKPRQLLSLPPFPGHPLPGKRSHEG 73
Query: 74 QQRDHVTAVNWIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKPMRKMRPN 133
VTAV+W+KYYF G + S I+SHF++GLVQME +K+ +MKPMRK+RP+
Sbjct: 74 GVVSRVTAVSWVKYYFDGIYDSTIQSHFKQGLVQME----CPGMIEKEGQMKPMRKIRPS 129
Query: 134 DVMKPGARLHVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPP 193
+VM+ GAR++VPVS+ E+R+S+R+D IPSGTLYPNADEI+Y+QR V YKDSAIIVLNKPP
Sbjct: 130 EVMEVGARVYVPVSVVESRVSRRFDCIPSGTLYPNADEIEYMQRRVKYKDSAIIVLNKPP 189
Query: 194 KLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLF 253
KLPVKGNLPVHNSMD SY ++GPKLVHRLD+ESSG+ L GRTK+SVS LQWL+
Sbjct: 190 KLPVKGNLPVHNSMDALAAAALSYGNNKGPKLVHRLDRESSGLHLMGRTKESVSLLQWLY 249
Query: 254 SNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAH 313
++ N KSSC+AW+DACEA YQRYWALVIG+P EKEG+I APLSKVLL++GKTERV+LAH
Sbjct: 250 TDFNKGKSSCQAWDDACEARYQRYWALVIGSPKEKEGLICAPLSKVLLDNGKTERVILAH 309
Query: 314 HSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWF 373
S +E Q+A+T+YRVLGP INGCSW+ELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWF
Sbjct: 310 QSGLEASQKAITQYRVLGPTINGCSWIELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWF 369
Query: 374 VHNRWKQMP 382
VH RWKQMP
Sbjct: 370 VHRRWKQMP 378
>D7SS16_VITVI (tr|D7SS16) Putative uncharacterized protein OS=Vitis vinifera
GN=VIT_09s0054g00780 PE=4 SV=1
Length = 481
Score = 536 bits (1380), Expect = e-150, Method: Compositional matrix adjust.
Identities = 265/376 (70%), Positives = 311/376 (82%), Gaps = 6/376 (1%)
Query: 14 LSSAVRHYSRIQPPRPVCVEPVIRVSNNIARLDVPKEGPKPRQILSLPPFPGHPLPGAS- 72
L VRHYSRI PPRP PVIRVSNN+A+L PKEGPKPRQ+LSLPPFP HPLPG S
Sbjct: 12 LFPVVRHYSRIAPPRPASAAPVIRVSNNVAQLGSPKEGPKPRQLLSLPPFPAHPLPGKSL 71
Query: 73 ---GQQRDHVTAVNWIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKPMRK 129
HVTA++WIKYYF GSV++SHF KGLV ME DS +K+ ++KP+RK
Sbjct: 72 VNVSGLPTHVTAISWIKYYFDEIPGSVVQSHFNKGLVHMERSNLDDSSLEKEGQIKPLRK 131
Query: 130 MRPNDVMKPGARLHVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRL--VIYKDSAII 187
++PN+VM+ G R++VPVS+AE RISKR+D IPSGTL+PNADEI+YLQRL + ++D AI+
Sbjct: 132 IKPNEVMEAGTRIYVPVSVAEARISKRFDTIPSGTLHPNADEIEYLQRLWLLKFQDPAIL 191
Query: 188 VLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVS 247
VLNKPPK+P+KGNLPVHNSMD ++DY+EGPKLVHRLD+ESSG+LL GRTK+SV+
Sbjct: 192 VLNKPPKVPLKGNLPVHNSMDALAAAALTFDYEEGPKLVHRLDRESSGLLLMGRTKESVA 251
Query: 248 HLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTE 307
HL WLFS+IN AKS KAW+DACEAT QRYWALVIG+P +KEG+IHAPLSKVLL+DGKTE
Sbjct: 252 HLHWLFSDINKAKSLSKAWDDACEATCQRYWALVIGSPKQKEGVIHAPLSKVLLDDGKTE 311
Query: 308 RVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGD 367
RV+LA+ S +E QEA+TEYRVLGP INGCSW+EL P TSRKHQLRVHCAEALGTPIVGD
Sbjct: 312 RVILANQSGLEASQEAITEYRVLGPMINGCSWIELCPRTSRKHQLRVHCAEALGTPIVGD 371
Query: 368 YKYGWFVHNRWKQMPR 383
YKYGWFVH RWKQMPR
Sbjct: 372 YKYGWFVHRRWKQMPR 387
>M1B239_SOLTU (tr|M1B239) Uncharacterized protein OS=Solanum tuberosum
GN=PGSC0003DMG400013566 PE=4 SV=1
Length = 475
Score = 519 bits (1336), Expect = e-145, Method: Compositional matrix adjust.
Identities = 251/357 (70%), Positives = 292/357 (81%), Gaps = 8/357 (2%)
Query: 32 VEPVIRVSNNIARLDVPKEGPKPRQILSLPPFPGHPLPG---ASG--QQRDHVTAVNWIK 86
EPVIRVSNNI L KEG KP Q+LSLPPFPGHPLPG A+G Q HVTA++WIK
Sbjct: 31 CEPVIRVSNNITHLGRQKEGAKPSQLLSLPPFPGHPLPGKKVATGPDQPSCHVTAISWIK 90
Query: 87 YYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKPMRKMRPNDVMKPGARLHVPV 146
YYF GSVI++HF KGLVQ+E + FT K+ + + +RK++ ++VM+ GAR+HVP+
Sbjct: 91 YYFDEIPGSVIQTHFNKGLVQLE---FNELFTSKEGQTRLLRKIKHSEVMEVGARIHVPI 147
Query: 147 SMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNS 206
S+AETRISKRYD IPSGTLYPNADEI YLQRLV YKD AI+VLNKPPKLP+KGNLPVHNS
Sbjct: 148 SVAETRISKRYDVIPSGTLYPNADEIAYLQRLVFYKDPAILVLNKPPKLPLKGNLPVHNS 207
Query: 207 MDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAW 266
MD SY+YDEGP+LVHRLD+ESSG+ L GRT++S+SHL LFSN +KS KAW
Sbjct: 208 MDALAAAALSYEYDEGPRLVHRLDRESSGLHLMGRTEESISHLHLLFSNTKKSKSLSKAW 267
Query: 267 NDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTE 326
NDAC +TYQRYWALVIG+P EKEG+I APL+KVLL+DG+TERVMLA S +E EAVTE
Sbjct: 268 NDACGSTYQRYWALVIGSPKEKEGVISAPLTKVLLDDGRTERVMLAQQSGLEASDEAVTE 327
Query: 327 YRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVHNRWKQMPR 383
YR+LGP INGCSW+ELRP TSRKHQ+RVHCAEALGTPIVGDYKYGWFVH +WKQMPR
Sbjct: 328 YRLLGPMINGCSWIELRPHTSRKHQIRVHCAEALGTPIVGDYKYGWFVHRKWKQMPR 384
>K4CED5_SOLLC (tr|K4CED5) Uncharacterized protein OS=Solanum lycopersicum
GN=Solyc07g042750.2 PE=4 SV=1
Length = 475
Score = 509 bits (1311), Expect = e-142, Method: Compositional matrix adjust.
Identities = 250/357 (70%), Positives = 289/357 (80%), Gaps = 8/357 (2%)
Query: 32 VEPVIRVSNNIARLDVPKEGPKPRQILSLPPFPGHPLPG---ASG--QQRDHVTAVNWIK 86
EPVIRVSNNI L K+G KP Q+LSLPPFPG PLPG A+G Q HVTA++WIK
Sbjct: 31 CEPVIRVSNNITHLGRQKDGVKPSQLLSLPPFPGCPLPGKKVATGPDQPSCHVTAISWIK 90
Query: 87 YYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKPMRKMRPNDVMKPGARLHVPV 146
YYF GSVI+SHF KGLVQ+E + FT K+ + + +RK++ ++VM+ GAR+HVP+
Sbjct: 91 YYFDEIPGSVIQSHFNKGLVQLE---LNELFTSKEGQTRLLRKIKHSEVMEVGARIHVPI 147
Query: 147 SMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNS 206
S+AETRISKRYD IPSGTLYPNADEI YLQRLV YKD AI+VLNKPPKLPVKGNL VHNS
Sbjct: 148 SVAETRISKRYDVIPSGTLYPNADEIAYLQRLVFYKDPAILVLNKPPKLPVKGNLHVHNS 207
Query: 207 MDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAW 266
MD SY+YDEGP+LVHRLD+ESSG+ L GRT++S+SHL LFSN +KS KAW
Sbjct: 208 MDALAAAALSYEYDEGPRLVHRLDRESSGLHLMGRTEESISHLHLLFSNTKRSKSLSKAW 267
Query: 267 NDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTE 326
NDAC +TYQRYWALVIG+P KEG+I APL+KVLL+DG+TERVMLA S +E EAVTE
Sbjct: 268 NDACGSTYQRYWALVIGSPKVKEGVISAPLTKVLLDDGRTERVMLAQQSGLEASDEAVTE 327
Query: 327 YRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVHNRWKQMPR 383
YR+LGP INGCSW+ELRP TSRKHQLRVHCAEALGTPIVGDYKYGWFVH +WKQMPR
Sbjct: 328 YRLLGPMINGCSWIELRPHTSRKHQLRVHCAEALGTPIVGDYKYGWFVHRKWKQMPR 384
>B9SLG9_RICCO (tr|B9SLG9) Ribosomal pseudouridine synthase, putative OS=Ricinus
communis GN=RCOM_0686660 PE=4 SV=1
Length = 468
Score = 507 bits (1305), Expect = e-141, Method: Compositional matrix adjust.
Identities = 263/368 (71%), Positives = 300/368 (81%), Gaps = 3/368 (0%)
Query: 16 SAVRHYSRIQPPRPVCVEPVIRVSNNIARLDVPKEGPKPRQILSLPPFPGHPLPGASGQQ 75
S R YSRI PP P PVIRVSNN+A L PK+GPKPRQ+LSLPPFPG PLPG +
Sbjct: 12 SQGRSYSRIAPPPPAYANPVIRVSNNVAHLGSPKDGPKPRQLLSLPPFPGLPLPGRNSMA 71
Query: 76 RDHVTAVNWIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKPMRKMRPNDV 135
HVTA++W+KYYF S I+SHF KGL +E + S + +RK++ ND+
Sbjct: 72 -SHVTAISWVKYYFDEILDSAIQSHFNKGLAHIECPNGSGSIEYGGQ--MSLRKIKHNDI 128
Query: 136 MKPGARLHVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKL 195
M+ GAR+HV VS+AETRISKR+D IPSGTLYPNADEI+YLQRLV YKDSAIIVLNKPP+L
Sbjct: 129 MEAGARVHVAVSVAETRISKRFDTIPSGTLYPNADEIQYLQRLVKYKDSAIIVLNKPPRL 188
Query: 196 PVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSN 255
PVKGNLP+HNSMD SYDYDEGPKLV RLD+ESSG+LL GRTK+S+ HLQWLFS+
Sbjct: 189 PVKGNLPLHNSMDALAAAALSYDYDEGPKLVQRLDRESSGLLLMGRTKESIDHLQWLFSD 248
Query: 256 INSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHS 315
+N + S CKAWNDAC+ATYQRYWALVIG+P EKEG+I APLSKVLLNDGKTERV+LA HS
Sbjct: 249 VNKSNSRCKAWNDACKATYQRYWALVIGSPKEKEGLIRAPLSKVLLNDGKTERVVLAQHS 308
Query: 316 TIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVH 375
+E QEA+TEYRVLGP+INGCSW+ELRPLTSRKHQLRVHCAEALGTPIVGDYKYGW VH
Sbjct: 309 GLEASQEALTEYRVLGPRINGCSWIELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWCVH 368
Query: 376 NRWKQMPR 383
RWKQMPR
Sbjct: 369 QRWKQMPR 376
>M4F1X8_BRARP (tr|M4F1X8) Uncharacterized protein OS=Brassica rapa subsp.
pekinensis GN=Bra035075 PE=3 SV=1
Length = 471
Score = 504 bits (1299), Expect = e-140, Method: Compositional matrix adjust.
Identities = 245/377 (64%), Positives = 295/377 (78%), Gaps = 19/377 (5%)
Query: 12 SWLSSAVRHYSRIQPPRPVCVEPVIRVSNNIARLDVPKEGPKPRQILSLPPFPGHPLPG- 70
S+L+S R +SR+ PP+P VIRV+NNIA L PK GP PRQ++ LPPFPGHPLPG
Sbjct: 16 SYLASPTRRFSRVAPPQPA----VIRVTNNIAHLGPPKTGPLPRQLMYLPPFPGHPLPGK 71
Query: 71 --ASGQQRD--HVTAVNWIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKP 126
+G D HVTA++W+KYYF+ I+SHF KGLV ME K++ ++
Sbjct: 72 NAVNGADGDVGHVTAISWVKYYFEEVNDKTIQSHFTKGLVVME----------KEDGVRA 121
Query: 127 MRKMRPNDVMKPGARLHVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAI 186
MRK++ N+VM+ G +L +PVS+AETRISKRYD IPSGTLYPNADEI YLQRLV +KDSAI
Sbjct: 122 MRKVKHNEVMQVGDKLWLPVSIAETRISKRYDTIPSGTLYPNADEIAYLQRLVRFKDSAI 181
Query: 187 IVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSV 246
IVLNKPPKLPVKGN+P+HNSMD SY DEGP+LVHRLD+E+SG+L+ GRTK+S+
Sbjct: 182 IVLNKPPKLPVKGNVPIHNSMDALAAAALSYGNDEGPRLVHRLDRETSGLLVMGRTKESI 241
Query: 247 SHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKT 306
HL +FS+ S CKAWN ACEA YQRYWALVIG+P +KEGI+ APLSKVLL+DGKT
Sbjct: 242 DHLHSVFSDFKGRNSRCKAWNKACEAMYQRYWALVIGSPKDKEGIVSAPLSKVLLDDGKT 301
Query: 307 ERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVG 366
+RV+LA S + QEA+T+YRVLGP INGCSW+ELRP+TSRKHQLRVHCAEALGTPIVG
Sbjct: 302 DRVVLAQGSGFKTSQEAITKYRVLGPMINGCSWLELRPITSRKHQLRVHCAEALGTPIVG 361
Query: 367 DYKYGWFVHNRWKQMPR 383
DYKYGWF+H RWKQMP+
Sbjct: 362 DYKYGWFIHKRWKQMPQ 378
>M0T0M2_MUSAM (tr|M0T0M2) Uncharacterized protein OS=Musa acuminata subsp.
malaccensis PE=4 SV=1
Length = 480
Score = 500 bits (1288), Expect = e-139, Method: Compositional matrix adjust.
Identities = 248/376 (65%), Positives = 298/376 (79%), Gaps = 12/376 (3%)
Query: 17 AVRHYSRIQPPRPVCVEPVIRVSNNIARLDVPKEGPKPRQILSLPPFPG---HPLPG--- 70
VR SRI PP P EPVIRVSNN+ARL PKEGPKPRQ+LSLPPFP PLPG
Sbjct: 16 VVRWLSRIAPPSPATAEPVIRVSNNVARLGKPKEGPKPRQLLSLPPFPSTGTDPLPGRKK 75
Query: 71 ---ASGQQRDHVTAVNWIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKPM 127
ASGQ R VTA++W+K+YF VI+SHF KGLV +E D T+++ M +
Sbjct: 76 DPAASGQPR-RVTAISWVKHYFADIPPEVIQSHFNKGLVHVES-SNHDFQTEENYLMHCL 133
Query: 128 RKMRPNDVMKPGARLHVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAII 187
+K++ N +M+PG ++H+PVS AET+I KRYD IP+ TL+PNADEI+Y++RLVI+K + II
Sbjct: 134 KKIKHNHIMEPGMKIHLPVSAAETKIIKRYDTIPTATLHPNADEIEYIRRLVIHK-ATII 192
Query: 188 VLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVS 247
VLNKPPK+P+KGNLPVHNSMD SY D+GPKLVHRLD+ESSG+LL GRTK+S++
Sbjct: 193 VLNKPPKVPMKGNLPVHNSMDILAAAALSYGSDQGPKLVHRLDRESSGLLLLGRTKESLT 252
Query: 248 HLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTE 307
L WLF+N+N AKSS + WN+ACEAT QRYWALVIG+P E+EGII APL+KVLLN+GK E
Sbjct: 253 RLHWLFTNVNLAKSSSEIWNNACEATTQRYWALVIGSPKEREGIISAPLTKVLLNNGKAE 312
Query: 308 RVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGD 367
R++LAH S I+ Q+A+TEYRV+GP INGCSWVELRPLT RKHQLRVHCAEALGTPIVGD
Sbjct: 313 RIILAHPSGIDGSQDAITEYRVMGPTINGCSWVELRPLTGRKHQLRVHCAEALGTPIVGD 372
Query: 368 YKYGWFVHNRWKQMPR 383
YKYGWFVH RWKQMPR
Sbjct: 373 YKYGWFVHQRWKQMPR 388
>D7KVW3_ARALL (tr|D7KVW3) Putative uncharacterized protein OS=Arabidopsis lyrata
subsp. lyrata GN=ARALYDRAFT_477057 PE=3 SV=1
Length = 477
Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust.
Identities = 240/377 (63%), Positives = 293/377 (77%), Gaps = 10/377 (2%)
Query: 13 WLSSAVRHYSRIQPPRPVCVEPVIRVSNNIARLDVPKEGPKPRQILSLPPFPGHPLPG-- 70
+L R YSR+ PP V+RV+NNIA L PK+GP PRQ++SLPPFPG+PLPG
Sbjct: 12 FLGVVTRRYSRVAPPP----SSVLRVTNNIAHLGPPKQGPLPRQLISLPPFPGYPLPGKN 67
Query: 71 --ASGQQRD--HVTAVNWIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKP 126
G + D HVTA++W+K+YF+ I++HF KGLVQME D+ + ++ P
Sbjct: 68 AGVDGDEGDSGHVTAISWVKFYFEEIHDKAIQTHFTKGLVQMEFRGRRDASRENEDGAIP 127
Query: 127 MRKMRPNDVMKPGARLHVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAI 186
MRK++ N+VM+ G ++ +PVS+AE RISKRYD IPSGTLYPNADEI YLQRLV +KDSAI
Sbjct: 128 MRKIKHNEVMEIGDKIWLPVSIAEMRISKRYDTIPSGTLYPNADEIAYLQRLVRFKDSAI 187
Query: 187 IVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSV 246
IVLNKPPKLPVKGN+P+HNSMD S+ DEGP+LVHRLD+E+SG+L+ GR+K+S+
Sbjct: 188 IVLNKPPKLPVKGNVPIHNSMDALAAAALSFGKDEGPRLVHRLDRETSGLLVMGRSKESI 247
Query: 247 SHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKT 306
+L +FS+ SSCKAWN ACEA YQ+YWALVIG+P EKEG+I APLSKVLL+DGKT
Sbjct: 248 HYLHSVFSDYKGRNSSCKAWNKACEAMYQQYWALVIGSPKEKEGLISAPLSKVLLDDGKT 307
Query: 307 ERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVG 366
+RV+LA S E QEA+TEYRVLGP INGCSW+ELRP+TSRKHQLRVHCAEALGT IVG
Sbjct: 308 DRVVLAQGSGFEASQEAITEYRVLGPMINGCSWLELRPITSRKHQLRVHCAEALGTSIVG 367
Query: 367 DYKYGWFVHNRWKQMPR 383
DYKYGWFVH RWKQMP+
Sbjct: 368 DYKYGWFVHKRWKQMPQ 384
>R0HTT9_9BRAS (tr|R0HTT9) Uncharacterized protein OS=Capsella rubella
GN=CARUB_v10022381mg PE=4 SV=1
Length = 478
Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust.
Identities = 237/378 (62%), Positives = 293/378 (77%), Gaps = 11/378 (2%)
Query: 13 WLSSAVRHYSRIQPPRPVCVEPVIRVSNNIARLDVPKEGPKPRQILSLPPFPGHPLPGAS 72
+++ R YSR+ PP VIRV+NN+A L PK+GP PRQ++SLPPFPG PLPG +
Sbjct: 12 YMAVVTRRYSRLAPPPST----VIRVTNNVAHLGPPKQGPLPRQLISLPPFPGPPLPGKN 67
Query: 73 G-------QQRDHVTAVNWIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMK 125
DHVTA++W+KYYF+ I++HF KGLVQME D+ + ++ +
Sbjct: 68 AVDNGDDGDSGDHVTAISWVKYYFEEIHDKAIQTHFTKGLVQMEFRGRRDASRENEDGAR 127
Query: 126 PMRKMRPNDVMKPGARLHVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSA 185
PMRK++ ++VM+ G ++ +PVS++E RISKRYD IPSGTLYPNADEI YLQRLV +KDSA
Sbjct: 128 PMRKIKHDEVMQIGDKIWLPVSISEMRISKRYDTIPSGTLYPNADEIAYLQRLVRFKDSA 187
Query: 186 IIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDS 245
IIVLNKPPKLPVKGN+P+HNSMD S+ DEGP+LVHRLD+E+SG+L+ GR K+S
Sbjct: 188 IIVLNKPPKLPVKGNVPIHNSMDALAAAALSFGNDEGPRLVHRLDRETSGLLVMGRNKES 247
Query: 246 VSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGK 305
+ +L +FS+ SSCKAWN +CEA YQ+YWALVIG+P EKEG+I APLSKVLL+DGK
Sbjct: 248 IGYLHSVFSDYKGRNSSCKAWNKSCEAMYQQYWALVIGSPKEKEGLISAPLSKVLLDDGK 307
Query: 306 TERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIV 365
T+RV+LA S E QEA+TEYRVLGP INGCSW+ELRP+TSRKHQLRVHCAEALGTPIV
Sbjct: 308 TDRVVLAQGSCFEASQEAITEYRVLGPMINGCSWLELRPITSRKHQLRVHCAEALGTPIV 367
Query: 366 GDYKYGWFVHNRWKQMPR 383
GDYKYGWFVH RWKQMP+
Sbjct: 368 GDYKYGWFVHKRWKQMPQ 385
>K3YHF2_SETIT (tr|K3YHF2) Uncharacterized protein OS=Setaria italica
GN=Si013670m.g PE=4 SV=1
Length = 478
Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust.
Identities = 228/381 (59%), Positives = 289/381 (75%), Gaps = 14/381 (3%)
Query: 11 WSWLSSAVRHYSRIQPPRPVCVEPVI-RV-SNNIARLDVPKEGPKPRQILSLPPFPG--H 66
W W +A+R SR+ PP P +PV+ RV S+N+ARL PK GP+PRQ+LSLPPFP
Sbjct: 12 WRW-PAALRRLSRLAPPTPAPADPVVVRVDSSNVARLGAPKPGPRPRQLLSLPPFPAGAD 70
Query: 67 PLPGASGQQRDHVTAVNWIKYYFKGTWGSVIESHFRKGLVQME----DLIAADSFTQKDE 122
PLPG R VTAV+W+K+YF +++HF + +V E + A TQK
Sbjct: 71 PLPGRKVVPR-RVTAVSWVKHYFADVPQEAVQAHFNRRMVFSECSEHEFSAESIRTQKHH 129
Query: 123 RMKPMRKMRPNDVMKPGARLHVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYK 182
++K++ NDVM+PG R+H+PVS+AE I KRY+ IP+ TL+PN DEI+YL+RLVI++
Sbjct: 130 ----LKKIKHNDVMEPGMRIHLPVSVAEGEIKKRYETIPTATLHPNKDEIEYLRRLVIHR 185
Query: 183 DSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRT 242
DS+I+VLNKPPK+P+KG+LPVHNSMD SY EGPKLVHRLD+ESSG++L GRT
Sbjct: 186 DSSILVLNKPPKVPMKGHLPVHNSMDVLAAAALSYGNKEGPKLVHRLDRESSGLILMGRT 245
Query: 243 KDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLN 302
K+S + L WLF+++N A+++ + WN ACEA Q+YWALVIGTP E+EG+I AP+SKVLL+
Sbjct: 246 KESFTQLHWLFTSVNLARTTSQTWNKACEAYVQKYWALVIGTPKEREGVISAPISKVLLD 305
Query: 303 DGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGT 362
DGK ERV+LAH S I+ QEA+TEYRV+GP INGCSW+ELRPLT RKHQLRVHCAEALGT
Sbjct: 306 DGKAERVILAHPSGIDGAQEAITEYRVMGPTINGCSWIELRPLTGRKHQLRVHCAEALGT 365
Query: 363 PIVGDYKYGWFVHNRWKQMPR 383
PIVGDYKYGWFVH RWKQ P+
Sbjct: 366 PIVGDYKYGWFVHQRWKQNPQ 386
>A3BUX1_ORYSJ (tr|A3BUX1) Putative uncharacterized protein OS=Oryza sativa subsp.
japonica GN=OsJ_27960 PE=2 SV=1
Length = 509
Score = 442 bits (1138), Expect = e-122, Method: Compositional matrix adjust.
Identities = 220/354 (62%), Positives = 270/354 (76%), Gaps = 5/354 (1%)
Query: 35 VIRV-SNNIARLDVPKEGPKPRQILSLPPFPGHPLPGASGQQRD----HVTAVNWIKYYF 89
V+RV +N+ARL PK GP+PRQ+LSLPPFPG ++ VTAV+W+K+Y
Sbjct: 64 VVRVDGSNVARLGKPKPGPRPRQLLSLPPFPGGGDGDPLPGRKAAAPRRVTAVSWVKHYL 123
Query: 90 KGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKPMRKMRPNDVMKPGARLHVPVSMA 149
V+++HF K LV E S + ++K++ NDVM+PG R+H+PVS+A
Sbjct: 124 ADVPQEVVQAHFNKRLVYSECSDHEVSVETIKSQKHHLKKIKHNDVMEPGMRIHLPVSVA 183
Query: 150 ETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDX 209
E I KRY+ IP+ TL+PN DEI+YL+RLVI+KDSAI+VLNKPPK+P+KGNLPVHNSMD
Sbjct: 184 EGEIKKRYETIPTATLHPNKDEIEYLRRLVIHKDSAILVLNKPPKVPMKGNLPVHNSMDV 243
Query: 210 XXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDA 269
SY +EGPKLVHRLD+ESSG+LLFGRTK+S + L WLF+++N AK++ + WN A
Sbjct: 244 LAAAALSYGNEEGPKLVHRLDRESSGLLLFGRTKESFTRLHWLFTSVNLAKTNSQVWNAA 303
Query: 270 CEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRV 329
CEA QRYWALVIGTP E+EGII APLSKVLL+DGK ERV+LAH S I+ QEAVT YRV
Sbjct: 304 CEAYMQRYWALVIGTPKEREGIISAPLSKVLLDDGKAERVILAHPSGIDGAQEAVTAYRV 363
Query: 330 LGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVHNRWKQMPR 383
+GP I+GCSW+ELRPLT RKHQLRVHCAEALGTPIVGDYKYGWFVH RWKQ P+
Sbjct: 364 MGPTIHGCSWIELRPLTGRKHQLRVHCAEALGTPIVGDYKYGWFVHQRWKQNPQ 417
>A2YX47_ORYSI (tr|A2YX47) Putative uncharacterized protein OS=Oryza sativa subsp.
indica GN=OsI_29911 PE=2 SV=1
Length = 475
Score = 442 bits (1137), Expect = e-122, Method: Compositional matrix adjust.
Identities = 220/354 (62%), Positives = 270/354 (76%), Gaps = 5/354 (1%)
Query: 35 VIRV-SNNIARLDVPKEGPKPRQILSLPPFPGHPLPGASGQQRD----HVTAVNWIKYYF 89
V+RV +N+ARL PK GP+PRQ+LSLPPFPG ++ VTAV+W+K+Y
Sbjct: 30 VVRVDGSNVARLGKPKPGPRPRQLLSLPPFPGGGDGDPLPGRKAAAPRRVTAVSWVKHYL 89
Query: 90 KGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKPMRKMRPNDVMKPGARLHVPVSMA 149
V+++HF K LV E S + ++K++ NDVM+PG R+H+PVS+A
Sbjct: 90 ADVPQEVVQAHFNKRLVYSECSDHEVSVETIKSQKHHLKKIKHNDVMEPGMRIHLPVSVA 149
Query: 150 ETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDX 209
E I KRY+ IP+ TL+PN DEI+YL+RLVI+KDSAI+VLNKPPK+P+KGNLPVHNSMD
Sbjct: 150 EGEIKKRYETIPTATLHPNKDEIEYLRRLVIHKDSAILVLNKPPKVPMKGNLPVHNSMDV 209
Query: 210 XXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDA 269
SY +EGPKLVHRLD+ESSG+LLFGRTK+S + L WLF+++N AK++ + WN A
Sbjct: 210 LAAAALSYGNEEGPKLVHRLDRESSGLLLFGRTKESFTRLHWLFTSVNLAKTNSQVWNAA 269
Query: 270 CEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRV 329
CEA QRYWALVIGTP E+EGII APLSKVLL+DGK ERV+LAH S I+ QEAVT YRV
Sbjct: 270 CEAYMQRYWALVIGTPKEREGIISAPLSKVLLDDGKAERVILAHPSGIDGAQEAVTAYRV 329
Query: 330 LGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVHNRWKQMPR 383
+GP I+GCSW+ELRPLT RKHQLRVHCAEALGTPIVGDYKYGWFVH RWKQ P+
Sbjct: 330 MGPTIHGCSWIELRPLTGRKHQLRVHCAEALGTPIVGDYKYGWFVHQRWKQNPQ 383
>K7U1X9_MAIZE (tr|K7U1X9) Uncharacterized protein OS=Zea mays GN=ZEAMMB73_778378
PE=4 SV=1
Length = 478
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 213/350 (60%), Positives = 270/350 (77%), Gaps = 9/350 (2%)
Query: 39 SNNIARLDVPKEGPKPRQILSLPPFPG--HPLPGASGQQRDHVTAVNWIKYYFKGTWGSV 96
+NN+ARL PK P+PRQ+LSLPPFP PLPG R VTAV+W+K+YF
Sbjct: 41 ANNVARLGAPKPRPRPRQLLSLPPFPAGQDPLPGRKVAPR-RVTAVSWVKHYFADVPQEA 99
Query: 97 IESHFRKGLVQMEDL---IAADSFTQKDERMKPMRKMRPNDVMKPGARLHVPVSMAETRI 153
+++HF + +V E ++ADS + +K K++ ND M+PG R+H+PVS+AE+ I
Sbjct: 100 VQAHFNRRMVFSECYDHKVSADSIRTQKHHLK---KIKHNDAMEPGMRIHLPVSVAESDI 156
Query: 154 SKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXX 213
KRY+ IP+ TL+PN DEI+YL+RLVIY+DSAI+VLNKPPK+P+KG+LPVHNSMD
Sbjct: 157 KKRYETIPTATLHPNKDEIEYLRRLVIYRDSAILVLNKPPKVPMKGHLPVHNSMDVLAAA 216
Query: 214 XXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEAT 273
SY +EGPKLVHRLD+ESSG++L GRTK+S + L WL +++N A++S + WN ACEA
Sbjct: 217 ALSYGSEEGPKLVHRLDRESSGLILMGRTKESFTRLHWLLTSVNLARTSSQTWNKACEAY 276
Query: 274 YQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPK 333
Q+YWALVIGTP E+EG+I AP+SKVLL+DGK ERV+LAH S I+ QEA+TEYRV+GP
Sbjct: 277 AQKYWALVIGTPKEREGVISAPISKVLLDDGKAERVILAHPSGIDGAQEAITEYRVMGPT 336
Query: 334 INGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVHNRWKQMPR 383
INGCSW+EL+PLT RKHQLRVHCAEALGTPIVGDYKYGWFVH WKQ P+
Sbjct: 337 INGCSWIELQPLTGRKHQLRVHCAEALGTPIVGDYKYGWFVHQTWKQNPQ 386
>I1I8M9_BRADI (tr|I1I8M9) Uncharacterized protein OS=Brachypodium distachyon
GN=BRADI3G40480 PE=3 SV=1
Length = 479
Score = 439 bits (1129), Expect = e-121, Method: Compositional matrix adjust.
Identities = 224/387 (57%), Positives = 285/387 (73%), Gaps = 14/387 (3%)
Query: 7 RNNSWSWLSSAVRHYSRIQPPRPVCVEPVIRV--SNNIARLDVPKEGPKPRQILSLPPFP 64
R W W + R SR+ PP P PV+RV +N+ARL PK GP+PRQ+LSLPPFP
Sbjct: 5 RLRPWPW-PAVRRRLSRLAPPAPAAAAPVVRVESGSNVARLGAPKPGPRPRQLLSLPPFP 63
Query: 65 G--HPLPG---ASGQQRDHVTAVNWIKYYFKGTWGSVIESHFRKGLVQME---DLIAADS 116
PLPG A+ + V+AV+W+K+ F V+++HF K V E ++A S
Sbjct: 64 AGADPLPGRKTAAAEASRRVSAVSWVKHCFADVPQEVVQAHFNKRQVFAECSDQEVSAVS 123
Query: 117 FTQKDERMKPMRKMRPNDVMKPGARLHVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQ 176
++ +K K++ ++VM+PG R+H+PVS+AE I KRY+ IP+ TL+PN DEI+YL+
Sbjct: 124 IRSQEHHLK---KIKHSEVMEPGMRIHLPVSVAEAEIKKRYETIPAATLHPNKDEIEYLK 180
Query: 177 RLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGI 236
RLVIYKDSAI+VLNKPPK+P+KG+LPVHNSMD SY ++GPKLVHRLD+++SG+
Sbjct: 181 RLVIYKDSAILVLNKPPKVPMKGHLPVHNSMDVLAAAALSYGNEDGPKLVHRLDRDTSGL 240
Query: 237 LLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPL 296
LL GRTK+S + L WLF+++ A+++ WN ACE+ QRYWALVIGTP E EG+I APL
Sbjct: 241 LLMGRTKESFTRLHWLFTSVKLARTASPIWNSACESYLQRYWALVIGTPKESEGVISAPL 300
Query: 297 SKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHC 356
+KVLL+DGK ERV+LAH S I+ QEAVTEYRV+GP INGCSW+EL PLT RKHQLRVHC
Sbjct: 301 TKVLLDDGKAERVILAHPSGIDGAQEAVTEYRVMGPTINGCSWIELCPLTGRKHQLRVHC 360
Query: 357 AEALGTPIVGDYKYGWFVHNRWKQMPR 383
AEALGTPIVGDYKYGWFVH RWKQ P+
Sbjct: 361 AEALGTPIVGDYKYGWFVHQRWKQNPQ 387
>I1QK84_ORYGL (tr|I1QK84) Uncharacterized protein OS=Oryza glaberrima PE=4 SV=1
Length = 477
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 219/356 (61%), Positives = 269/356 (75%), Gaps = 7/356 (1%)
Query: 35 VIRV-SNNIARLDVPKEGPKPRQILSLPPFPGHPLPGASGQQRD----HVTAVNWIKYYF 89
V+RV +N+ARL PK GP+ RQ+LSLPPFPG ++ VTAV+W+K+Y
Sbjct: 30 VVRVDGSNVARLGKPKPGPRQRQMLSLPPFPGGGDGDPLPGRKAAAPRRVTAVSWVKHYL 89
Query: 90 KGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKPMRKMRPNDVMKPGARLHVPVSMA 149
V+++HF K LV E S + ++K++ NDVM+PG R+H+PVS+A
Sbjct: 90 ADVPQEVVQAHFNKRLVYSECSDHEVSVETIKSQKHHLKKIKHNDVMEPGMRIHLPVSVA 149
Query: 150 ETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDX 209
E I KRY+ IP+ TL+PN DEI+YL+RLVI+KDSAI+VLNKPPK+P+KGNLPVHNSMD
Sbjct: 150 EGEIKKRYETIPTATLHPNKDEIEYLRRLVIHKDSAILVLNKPPKVPMKGNLPVHNSMDV 209
Query: 210 XXXXXXSYDYDEGPKL--VHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWN 267
SY +EGPKL VHRLD+ESSG+LLFGRTK+S + L WLF+++N AK++ + WN
Sbjct: 210 LAAAALSYGNEEGPKLPQVHRLDRESSGLLLFGRTKESFTRLHWLFTSVNLAKTNSQVWN 269
Query: 268 DACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEY 327
ACEA QRYWALVIGTP E+EGII APLSKVLL+DGK ERV+LAH S I+ QEAVT Y
Sbjct: 270 AACEAYMQRYWALVIGTPKEREGIISAPLSKVLLDDGKAERVILAHPSGIDGAQEAVTAY 329
Query: 328 RVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVHNRWKQMPR 383
RV+GP I+GCSW+ELRPLT RKHQLRVHCAEALGTPIVGDYKYGWFVH RWKQ P+
Sbjct: 330 RVMGPTIHGCSWIELRPLTGRKHQLRVHCAEALGTPIVGDYKYGWFVHQRWKQNPQ 385
>M0ZA50_HORVD (tr|M0ZA50) Uncharacterized protein OS=Hordeum vulgare var.
distichum PE=4 SV=1
Length = 353
Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust.
Identities = 176/255 (69%), Positives = 215/255 (84%)
Query: 129 KMRPNDVMKPGARLHVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIV 188
+++ ++VM+PG R+H+PVS+AE I KRY+ IP+ TL+PN DEI+YL+RLVIYKDSAI+V
Sbjct: 7 QIKHSEVMEPGMRIHLPVSVAEAEIKKRYETIPTATLHPNRDEIEYLKRLVIYKDSAILV 66
Query: 189 LNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSH 248
LNKPPK+P+KGNLPVHNSMD S+ +EGPKLVHRLD++SSG+LL GRT++S +
Sbjct: 67 LNKPPKVPMKGNLPVHNSMDVLAAAALSFGNEEGPKLVHRLDRDSSGLLLMGRTRESFTR 126
Query: 249 LQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTER 308
L WLF++I AK++ + WN ACE+ QRYWALVIGTP E EG+I APL+KVLL+DGK ER
Sbjct: 127 LHWLFTSIKLAKTASQTWNTACESYLQRYWALVIGTPTESEGVISAPLTKVLLDDGKAER 186
Query: 309 VMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDY 368
V+LAH S I+ QEAVTEYRV+GP INGCSW+ELRPLT RKHQLRVHCAEALGTPIVGDY
Sbjct: 187 VILAHPSGIDGAQEAVTEYRVMGPTINGCSWIELRPLTGRKHQLRVHCAEALGTPIVGDY 246
Query: 369 KYGWFVHNRWKQMPR 383
KYGWFVH RWKQ P+
Sbjct: 247 KYGWFVHQRWKQNPQ 261
>F2D071_HORVD (tr|F2D071) Predicted protein (Fragment) OS=Hordeum vulgare var.
distichum PE=2 SV=1
Length = 357
Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust.
Identities = 175/257 (68%), Positives = 216/257 (84%)
Query: 127 MRKMRPNDVMKPGARLHVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAI 186
+++++ ++VM+PG R+H+PVS+AE I KRY+ IP+ TL+PN DEI+YL+RLVIYKDSAI
Sbjct: 9 LKRIKHSEVMEPGMRIHLPVSVAEAEIKKRYETIPTATLHPNRDEIEYLKRLVIYKDSAI 68
Query: 187 IVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSV 246
+VLNKPPK+P+KGNLPVHNSMD S+ +EGPKLVHRLD++SSG+LL GRT++
Sbjct: 69 LVLNKPPKVPMKGNLPVHNSMDVLAAAALSFGNEEGPKLVHRLDRDSSGLLLMGRTREGF 128
Query: 247 SHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKT 306
+ L WLF++I AK++ + WN ACE+ QRYWALVIGTP E EG+I APL+KVLL+DGK
Sbjct: 129 TRLHWLFTSIKLAKTASQTWNTACESYLQRYWALVIGTPTESEGVISAPLTKVLLDDGKA 188
Query: 307 ERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVG 366
ERV+LAH S I+ QEAVTEYRV+GP INGCSW+ELRPLT RKHQLRVHCAEALGTPIVG
Sbjct: 189 ERVILAHPSGIDGAQEAVTEYRVMGPTINGCSWIELRPLTGRKHQLRVHCAEALGTPIVG 248
Query: 367 DYKYGWFVHNRWKQMPR 383
DYKYGWFVH RWKQ P+
Sbjct: 249 DYKYGWFVHQRWKQNPQ 265
>J3MUH2_ORYBR (tr|J3MUH2) Uncharacterized protein OS=Oryza brachyantha
GN=OB08G27530 PE=4 SV=1
Length = 340
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 178/248 (71%), Positives = 210/248 (84%)
Query: 136 MKPGARLHVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKL 195
M+PG R+H+PVS+AE I KRY+ IP+ TL+PN DEI+YL+RLVI+KDS+I+VLNKPPK+
Sbjct: 1 MEPGMRIHLPVSVAEGEIKKRYETIPTATLHPNKDEIEYLKRLVIHKDSSILVLNKPPKV 60
Query: 196 PVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSN 255
P+KG+LPVHNSMD SY DEGPKLVHRLD+ESSG+LL GRTK+S + L WLF++
Sbjct: 61 PMKGHLPVHNSMDVLAAAALSYGNDEGPKLVHRLDRESSGLLLMGRTKESFTRLHWLFTS 120
Query: 256 INSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHS 315
+N AK++ +AWN ACEA QRYWALVIGTP E EGII APLSKVLL+DGK ERV+LAH S
Sbjct: 121 VNLAKTNSEAWNAACEAYMQRYWALVIGTPKESEGIISAPLSKVLLDDGKAERVILAHPS 180
Query: 316 TIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVH 375
I+ QEAVT YRV+GP I+GCSW+ELRPLT RKHQLRVHCAEALGTPIVGDYKYGWFVH
Sbjct: 181 GIDGAQEAVTAYRVMGPTISGCSWIELRPLTGRKHQLRVHCAEALGTPIVGDYKYGWFVH 240
Query: 376 NRWKQMPR 383
RWKQ P+
Sbjct: 241 QRWKQNPQ 248
>M0ZA48_HORVD (tr|M0ZA48) Uncharacterized protein OS=Hordeum vulgare var.
distichum PE=4 SV=1
Length = 340
Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust.
Identities = 175/248 (70%), Positives = 209/248 (84%)
Query: 136 MKPGARLHVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKL 195
M+PG R+H+PVS+AE I KRY+ IP+ TL+PN DEI+YL+RLVIYKDSAI+VLNKPPK+
Sbjct: 1 MEPGMRIHLPVSVAEAEIKKRYETIPTATLHPNRDEIEYLKRLVIYKDSAILVLNKPPKV 60
Query: 196 PVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSN 255
P+KGNLPVHNSMD S+ +EGPKLVHRLD++SSG+LL GRT++S + L WLF++
Sbjct: 61 PMKGNLPVHNSMDVLAAAALSFGNEEGPKLVHRLDRDSSGLLLMGRTRESFTRLHWLFTS 120
Query: 256 INSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHS 315
I AK++ + WN ACE+ QRYWALVIGTP E EG+I APL+KVLL+DGK ERV+LAH S
Sbjct: 121 IKLAKTASQTWNTACESYLQRYWALVIGTPTESEGVISAPLTKVLLDDGKAERVILAHPS 180
Query: 316 TIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVH 375
I+ QEAVTEYRV+GP INGCSW+ELRPLT RKHQLRVHCAEALGTPIVGDYKYGWFVH
Sbjct: 181 GIDGAQEAVTEYRVMGPTINGCSWIELRPLTGRKHQLRVHCAEALGTPIVGDYKYGWFVH 240
Query: 376 NRWKQMPR 383
RWKQ P+
Sbjct: 241 QRWKQNPQ 248
>K7UC97_MAIZE (tr|K7UC97) Uncharacterized protein OS=Zea mays GN=ZEAMMB73_778378
PE=4 SV=1
Length = 340
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 171/248 (68%), Positives = 210/248 (84%)
Query: 136 MKPGARLHVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKL 195
M+PG R+H+PVS+AE+ I KRY+ IP+ TL+PN DEI+YL+RLVIY+DSAI+VLNKPPK+
Sbjct: 1 MEPGMRIHLPVSVAESDIKKRYETIPTATLHPNKDEIEYLRRLVIYRDSAILVLNKPPKV 60
Query: 196 PVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSN 255
P+KG+LPVHNSMD SY +EGPKLVHRLD+ESSG++L GRTK+S + L WL ++
Sbjct: 61 PMKGHLPVHNSMDVLAAAALSYGSEEGPKLVHRLDRESSGLILMGRTKESFTRLHWLLTS 120
Query: 256 INSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHS 315
+N A++S + WN ACEA Q+YWALVIGTP E+EG+I AP+SKVLL+DGK ERV+LAH S
Sbjct: 121 VNLARTSSQTWNKACEAYAQKYWALVIGTPKEREGVISAPISKVLLDDGKAERVILAHPS 180
Query: 316 TIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVH 375
I+ QEA+TEYRV+GP INGCSW+EL+PLT RKHQLRVHCAEALGTPIVGDYKYGWFVH
Sbjct: 181 GIDGAQEAITEYRVMGPTINGCSWIELQPLTGRKHQLRVHCAEALGTPIVGDYKYGWFVH 240
Query: 376 NRWKQMPR 383
WKQ P+
Sbjct: 241 QTWKQNPQ 248
>M8BA18_AEGTA (tr|M8BA18) RNA pseudourine synthase 3, mitochondrial OS=Aegilops
tauschii GN=F775_04253 PE=4 SV=1
Length = 368
Score = 365 bits (938), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 172/257 (66%), Positives = 210/257 (81%), Gaps = 11/257 (4%)
Query: 127 MRKMRPNDVMKPGARLHVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAI 186
++K++ ++VM+PG R+H+PVS+AE I KRY+ IP+ TL+PN DEI+YL+RLVIYKDSAI
Sbjct: 31 LKKIKHSEVMEPGMRIHLPVSVAEAEIKKRYETIPTATLHPNRDEIEYLKRLVIYKDSAI 90
Query: 187 IVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSV 246
+VLNKPPK+P+KGNLPVHNSMD SY +EGPKLVHRLD+++SG+LL GRT++S
Sbjct: 91 LVLNKPPKVPMKGNLPVHNSMDVLAAAALSYGNEEGPKLVHRLDRDTSGLLLMGRTRESF 150
Query: 247 SHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKT 306
+ L WLF++I A+++ QRYWALVIGTP E EGII APL+KVLL+DGK
Sbjct: 151 TRLHWLFTSIKLARTAS-----------QRYWALVIGTPTESEGIISAPLTKVLLDDGKA 199
Query: 307 ERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVG 366
ERV+LAH S I+ QEAVTEYRV+GP INGCSW+ELRPLT RKHQLRVHCAEALGTPIVG
Sbjct: 200 ERVILAHPSGIDGAQEAVTEYRVMGPTINGCSWIELRPLTGRKHQLRVHCAEALGTPIVG 259
Query: 367 DYKYGWFVHNRWKQMPR 383
DYKYGWFVH RWKQ P+
Sbjct: 260 DYKYGWFVHQRWKQNPQ 276
>C5YIB1_SORBI (tr|C5YIB1) Putative uncharacterized protein Sb07g027030 OS=Sorghum
bicolor GN=Sb07g027030 PE=4 SV=1
Length = 439
Score = 350 bits (899), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 190/350 (54%), Positives = 234/350 (66%), Gaps = 48/350 (13%)
Query: 39 SNNIARLDVPKEGPKPRQILSLPPFPG--HPLPGASGQQRDHVTAVNWIKYYFKGTWGSV 96
++N+ARL PK GP+PRQ+LSLP FP PLPG R VT V+W+K+YF
Sbjct: 41 ASNVARLGPPKPGPRPRQLLSLPAFPAGLDPLPGRKAAPR-RVTVVSWVKHYFADVPHEA 99
Query: 97 IESHFRKGLVQME---DLIAADSFTQKDERMKPMRKMRPNDVMKPGARLHVPVSMAETRI 153
+++HF + V E ++ADS + +K K++ ND M+PG R+H+PVS+AE I
Sbjct: 100 VQAHFNRRTVFSECSDHEVSADSIRTQKHHLK---KIKHNDAMEPGMRIHLPVSVAEGEI 156
Query: 154 SKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXX 213
KRY+ IP+ TL+PN DEI+YL+RLVI++DSAI+VLNKPPK+P+KG+LPVHNSMD
Sbjct: 157 KKRYETIPTATLHPNKDEIEYLRRLVIHRDSAILVLNKPPKVPMKGHLPVHNSMDVLAAA 216
Query: 214 XXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEAT 273
SY EGPKL WN ACEA
Sbjct: 217 ALSYGNKEGPKLT---------------------------------------WNKACEAY 237
Query: 274 YQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPK 333
Q+YWALVIGTP E+EG+I AP+SKVLL+DGK ERV+LAH S I+ QEA+TEYRV+GP
Sbjct: 238 VQKYWALVIGTPKEREGVICAPISKVLLDDGKAERVILAHPSGIDGAQEAITEYRVMGPT 297
Query: 334 INGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVHNRWKQMPR 383
INGCSW+ELRPLT RKHQLRVHCAEALGTPIVGDYKYGWFVH WKQ P+
Sbjct: 298 INGCSWIELRPLTGRKHQLRVHCAEALGTPIVGDYKYGWFVHQTWKQNPQ 347
>M8A4M3_TRIUA (tr|M8A4M3) RNA pseudourine synthase 3, mitochondrial OS=Triticum
urartu GN=TRIUR3_25998 PE=4 SV=1
Length = 400
Score = 348 bits (892), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 171/289 (59%), Positives = 210/289 (72%), Gaps = 43/289 (14%)
Query: 127 MRKMRPNDVMKPGARLHVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAI 186
++K++ ++VM+PG R+H+PVS+AE I KRY+ IP+ TL+PN DEI+YL+RLVIYKDSAI
Sbjct: 31 LKKIKHSEVMEPGMRIHLPVSVAEAEIKKRYETIPTATLHPNRDEIEYLKRLVIYKDSAI 90
Query: 187 IVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSV 246
+VLNKPPK+P+KGNLPVHNSMD SY +EGPKLVHRLD+++SG+LL GRT++S
Sbjct: 91 LVLNKPPKVPMKGNLPVHNSMDVLAAAALSYGNEEGPKLVHRLDRDTSGLLLMGRTRESF 150
Query: 247 SHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSK-------- 298
+ L WLF++I A+++ QRYWALVIGTP E EG+I APL+K
Sbjct: 151 TRLHWLFTSIKLARTAS-----------QRYWALVIGTPTESEGVISAPLTKGSRDHARP 199
Query: 299 ------------------------VLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKI 334
VLL+DGK ERV+LAH S I+ QEAVTEYRV+GP I
Sbjct: 200 QENSSLRCSNRCPKIGHRQEGNRDVLLDDGKAERVILAHPSGIDGAQEAVTEYRVMGPTI 259
Query: 335 NGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVHNRWKQMPR 383
NGCSW+ELRPLT RKHQLRVHCAEALGTPIVGDYKYGWFVH RWKQ P+
Sbjct: 260 NGCSWIELRPLTGRKHQLRVHCAEALGTPIVGDYKYGWFVHQRWKQNPQ 308
>M0ZA55_HORVD (tr|M0ZA55) Uncharacterized protein OS=Hordeum vulgare var.
distichum PE=4 SV=1
Length = 183
Score = 240 bits (613), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 107/172 (62%), Positives = 140/172 (81%)
Query: 129 KMRPNDVMKPGARLHVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIV 188
+++ ++VM+PG R+H+PVS+AE I KRY+ IP+ TL+PN DEI+YL+RLVIYKDSAI+V
Sbjct: 7 QIKHSEVMEPGMRIHLPVSVAEAEIKKRYETIPTATLHPNRDEIEYLKRLVIYKDSAILV 66
Query: 189 LNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSH 248
LNKPPK+P+KGNLPVHNSMD S+ +EGPKLVHRLD++SSG+LL GRT++S +
Sbjct: 67 LNKPPKVPMKGNLPVHNSMDVLAAAALSFGNEEGPKLVHRLDRDSSGLLLMGRTRESFTR 126
Query: 249 LQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVL 300
L WLF++I AK++ + WN ACE+ QRYWALVIGTP E EG+I APL+KV
Sbjct: 127 LHWLFTSIKLAKTASQTWNTACESYLQRYWALVIGTPTESEGVISAPLTKVF 178
>M5VIW4_PRUPE (tr|M5VIW4) Uncharacterized protein OS=Prunus persica
GN=PRUPE_ppa004969mg PE=4 SV=1
Length = 483
Score = 240 bits (612), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 120/287 (41%), Positives = 181/287 (63%), Gaps = 1/287 (0%)
Query: 95 SVIESHFRKGLVQMEDLIAADSFTQKDERMKPMRKMRPNDVMKPGARLHVPVSMAETRIS 154
S+++ FR V+ E S + +P++++ D M G R+H+P+S+ E
Sbjct: 109 SLVQKLFRLRQVRRESCDMECSGEGVEALERPLKRVAAKDSMNVGDRIHLPLSVQEFPND 168
Query: 155 KRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXX 214
K+ Y + +E+ +++ L +YKD AIIV+NKPP +PV+G + + S+D
Sbjct: 169 KQELPNDKKECYCSEEEVTFIRSLELYKDPAIIVINKPPGMPVQGGIGIKRSLDELAAAC 228
Query: 215 XSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATY 274
SYD+ E P+LVHRLD++SSGIL+ GRT+ S + L +F + +S +DA
Sbjct: 229 LSYDFSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFRE-KTFGASNDEIDDAKRILQ 287
Query: 275 QRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKI 334
+RYWALVIG+P +++G+I APL KV++++GK++R+ + + S P Q A+T+Y+V+G
Sbjct: 288 RRYWALVIGSPRQRKGLISAPLGKVVVDNGKSDRITIVNDSQTLPSQHAITKYKVIGSPC 347
Query: 335 NGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVHNRWKQM 381
G +W+EL PLT RKHQLRVHCAE L TPIVGDYKYGW H WK +
Sbjct: 348 PGYTWLELTPLTGRKHQLRVHCAEVLRTPIVGDYKYGWQTHRNWKPL 394
>M5VVR6_PRUPE (tr|M5VVR6) Uncharacterized protein OS=Prunus persica
GN=PRUPE_ppa004969mg PE=4 SV=1
Length = 481
Score = 234 bits (596), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 119/285 (41%), Positives = 179/285 (62%), Gaps = 3/285 (1%)
Query: 95 SVIESHFRKGLVQMEDLIAADSFTQKDERMKPMRKMRPNDVMKPGARLHVPVSMAETRIS 154
S+++ FR V+ E S + +P++++ D M G R+H+P+S+ E
Sbjct: 109 SLVQKLFRLRQVRRESCDMECSGEGVEALERPLKRVAAKDSMNVGDRIHLPLSVQEFPND 168
Query: 155 KRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXX 214
K+ Y + +E+ +++ L +YKD AIIV+NKPP +PV+G + + S+D
Sbjct: 169 KQELPNDKKECYCSEEEVTFIRSLELYKDPAIIVINKPPGMPVQGGIGIKRSLDELAAAC 228
Query: 215 XSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATY 274
SYD+ E P+LVHRLD++SSGIL+ GRT+ S + L +F + +S +DA
Sbjct: 229 LSYDFSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFRE-KTFGASNDEIDDAKRILQ 287
Query: 275 QRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKI 334
+RYWALVIG+P +++G+I APL KV++++GK++R+ + + S P Q A+T+Y+V+G
Sbjct: 288 RRYWALVIGSPRQRKGLISAPLGKVVVDNGKSDRITIVNDSQTLPSQHAITKYKVIGSPC 347
Query: 335 NGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVHNRWK 379
+W+EL PLT RKHQLRVHCAE L TPIVGDYKYGW H WK
Sbjct: 348 Y--TWLELTPLTGRKHQLRVHCAEVLRTPIVGDYKYGWQTHRNWK 390
>I1IIQ2_BRADI (tr|I1IIQ2) Uncharacterized protein OS=Brachypodium distachyon
GN=BRADI4G08187 PE=4 SV=1
Length = 465
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 125/314 (39%), Positives = 181/314 (57%), Gaps = 13/314 (4%)
Query: 70 GASGQQRDHVTAVNWIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKPMRK 129
G ++ TA+ W++ S+++ FR V+ L A S T +++
Sbjct: 75 GGEAEETSSSTAIRWVRRCCPDLPASLVQKLFRLRKVKKNALTAETSSTDASAEQFQLKR 134
Query: 130 MRPNDVMKPGARLHVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVL 189
+ D + PG L +PV++ E+ ++++ + N +EI +L+ L IYKD AIIV+
Sbjct: 135 VSAKDYLLPGDTLFLPVNIQESSVAEKTRK------FDNRNEIDFLRSLEIYKDKAIIVI 188
Query: 190 NKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHL 249
NKPP +PV+G + + NS+D + E P+LVHRLD++ SG+L+ GRT+ S S L
Sbjct: 189 NKPPGMPVQGGVGIKNSIDVLAPMFEE-NSSEAPRLVHRLDRDCSGVLVLGRTQLSASIL 247
Query: 250 QWLFSNINSAKSSCKAWNDACEATYQR-YWALVIGTPNEKEGIIHAPLSKVLLNDGKTER 308
+F + + A D + QR Y ALVIGTP +G++ APL+KVLL DGK+ER
Sbjct: 248 HAIFR-----EKTADALADGTQQVLQRKYVALVIGTPRHSKGLLSAPLAKVLLQDGKSER 302
Query: 309 VMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDY 368
+ + Q+A+TEYRV+ G +W+EL PLT RKHQLRVHCAE LGTPIVGDY
Sbjct: 303 LTVKAGPNTTSVQDALTEYRVIESCPQGFTWLELFPLTGRKHQLRVHCAEVLGTPIVGDY 362
Query: 369 KYGWFVHNRWKQMP 382
KYG H W +P
Sbjct: 363 KYGRQAHQNWSPLP 376
>D7UBZ2_VITVI (tr|D7UBZ2) Putative uncharacterized protein OS=Vitis vinifera
GN=VIT_03s0180g00270 PE=4 SV=1
Length = 476
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 128/319 (40%), Positives = 186/319 (58%), Gaps = 18/319 (5%)
Query: 65 GHPLPGASGQQRDHVTAVNWIKYYFKGTWGSVIESHFRKGLVQME--DLIAADSFTQKDE 122
G+ GAS TA+ W+ S+++ FR V+ E ++I +D Q E
Sbjct: 85 GNTTAGAS------TTALKWVVRCCPQLPRSLVQKLFRLRQVRRESYNMITSDIGVQNQE 138
Query: 123 RMKPMRKMRPNDVMKPGARLHVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYK 182
++++ D+M G ++ +P+++ E K + N +EI ++ L +YK
Sbjct: 139 HR--LKRVAAKDLMNLGDQILLPITVEEFPSEKH-------EYHCNDEEINFVHNLELYK 189
Query: 183 DSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRT 242
D AIIV+NKPP LPV+G + + S+D YD E P+LVHRLD++SSGIL+ GRT
Sbjct: 190 DPAIIVVNKPPGLPVQGGIGIKRSLDELAATYLRYDCSEPPRLVHRLDRDSSGILIMGRT 249
Query: 243 KDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLN 302
+ S + L +F + +S + +RYWALVIG+P G+I APL KV+++
Sbjct: 250 QTSATILHSIFRE-KTFGASNNDIDTKKRILQRRYWALVIGSPRRPRGLISAPLGKVVVD 308
Query: 303 DGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGT 362
DGK+ER+ + + Q A+TEYRV+ +G +W+EL PLT RKHQLRVHCAE LGT
Sbjct: 309 DGKSERITIVDNVQTMSSQHAITEYRVIKSSCHGYTWLELSPLTGRKHQLRVHCAEVLGT 368
Query: 363 PIVGDYKYGWFVHNRWKQM 381
PIVGDYKYGW H +WKQ+
Sbjct: 369 PIVGDYKYGWQAHRKWKQL 387
>M0ZA54_HORVD (tr|M0ZA54) Uncharacterized protein OS=Hordeum vulgare var.
distichum PE=4 SV=1
Length = 237
Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 105/145 (72%), Positives = 122/145 (84%)
Query: 239 FGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSK 298
GRT++S + L WLF++I AK++ + WN ACE+ QRYWALVIGTP E EG+I APL+K
Sbjct: 1 MGRTRESFTRLHWLFTSIKLAKTASQTWNTACESYLQRYWALVIGTPTESEGVISAPLTK 60
Query: 299 VLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAE 358
VLL+DGK ERV+LAH S I+ QEAVTEYRV+GP INGCSW+ELRPLT RKHQLRVHCAE
Sbjct: 61 VLLDDGKAERVILAHPSGIDGAQEAVTEYRVMGPTINGCSWIELRPLTGRKHQLRVHCAE 120
Query: 359 ALGTPIVGDYKYGWFVHNRWKQMPR 383
ALGTPIVGDYKYGWFVH RWKQ P+
Sbjct: 121 ALGTPIVGDYKYGWFVHQRWKQNPQ 145
>B9RY90_RICCO (tr|B9RY90) Ribosomal pseudouridine synthase, putative OS=Ricinus
communis GN=RCOM_0811340 PE=4 SV=1
Length = 536
Score = 230 bits (587), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 131/339 (38%), Positives = 193/339 (56%), Gaps = 29/339 (8%)
Query: 56 QILSLPPFP--------GHPLPG-ASGQQRDHVTAVNWIKYYFKGTWGSVIESHFRKGLV 106
+ +LPP+ G L A+ + TA+ W+ ++++ FR V
Sbjct: 127 KFFTLPPYTSTISGSALGKALSATATAKASTETTALKWVLRCCPELPRNLVQKLFRLRQV 186
Query: 107 QMEDLIAADSFTQKDERMKPMRKMRPNDVMKPGARLHVPVSMAETRISKRYDAIPSGTLY 166
+ E L D E +++ D+M G R+ +P+S+ K+ +
Sbjct: 187 KRELLNVGDG-----EMEHKTKRVAAKDLMNVGDRIFLPISVQALPFEKQ-------KCH 234
Query: 167 PNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLV 226
E +++ L +YKD AIIV+NKPP +PV+G + + +S D SYDY E P+LV
Sbjct: 235 CGEKEANFIRGLELYKDEAIIVVNKPPGMPVQGGIGIKSSFDELAASCLSYDYSEPPRLV 294
Query: 227 HRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACE---ATYQRYWALVIG 283
HRLD++SSGIL+ GRT+ S L +F A S+ +D E ++YWALVIG
Sbjct: 295 HRLDRDSSGILVMGRTQTSTMVLHSVFREKTFAASN----HDIGERRRILQRKYWALVIG 350
Query: 284 TPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELR 343
+P ++GII APL KV+++DGK++R+ + ++ Q AVT+YRV+ +G +W+EL
Sbjct: 351 SPRRQKGIISAPLGKVVVDDGKSDRITVVENAESTSFQHAVTQYRVMESS-HGYAWLELS 409
Query: 344 PLTSRKHQLRVHCAEALGTPIVGDYKYGWFVHNRWKQMP 382
P+T RKHQLRVHCAE LGTPIVGDYKYGW VH +WKQ+P
Sbjct: 410 PITGRKHQLRVHCAEVLGTPIVGDYKYGWQVHRKWKQLP 448
>C0HH71_MAIZE (tr|C0HH71) Uncharacterized protein OS=Zea mays PE=2 SV=1
Length = 237
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 102/145 (70%), Positives = 122/145 (84%)
Query: 239 FGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSK 298
GRTK+S + L WL +++N A++S + WN ACEA Q+YWALVIGTP E+EG+I AP+SK
Sbjct: 1 MGRTKESFTRLHWLLTSVNLARTSSQTWNKACEAYAQKYWALVIGTPKEREGVISAPISK 60
Query: 299 VLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAE 358
VLL+DGK ERV+LAH S I+ QEA+TEYRV+GP INGCSW+EL+PLT RKHQLRVHCAE
Sbjct: 61 VLLDDGKAERVILAHPSGIDGAQEAITEYRVMGPTINGCSWIELQPLTGRKHQLRVHCAE 120
Query: 359 ALGTPIVGDYKYGWFVHNRWKQMPR 383
ALGTPIVGDYKYGWFVH WKQ P+
Sbjct: 121 ALGTPIVGDYKYGWFVHQTWKQNPQ 145
>F2EHA5_HORVD (tr|F2EHA5) Predicted protein OS=Hordeum vulgare var. distichum
PE=2 SV=1
Length = 472
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 123/304 (40%), Positives = 177/304 (58%), Gaps = 13/304 (4%)
Query: 80 TAVNWIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKPMRKMRPNDVMKPG 139
TA+ W++ S+++ FR V+ + A S T +R++ D + PG
Sbjct: 92 TAIRWVRRCCPDLPASLVQKLFRLRKVKKNAVTAETSSTHASAEQFRLRRVSAKDHLLPG 151
Query: 140 ARLHVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKG 199
L +PV++ E+ ++++ + N +EI +L+ L IYKD AIIV+NKPP +PV+G
Sbjct: 152 DTLFLPVNIQESSVAEK------ARKFDNRNEIDFLRSLEIYKDKAIIVVNKPPGMPVQG 205
Query: 200 NLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSA 259
+ + NS+D D P+LVHRLD++ SG+L+ GRT+ S S L +F
Sbjct: 206 GVGIKNSIDVLAPMFEENSSD-APRLVHRLDRDCSGVLVLGRTQLSASILHAIFR----- 259
Query: 260 KSSCKAWNDACEATYQR-YWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIE 318
+ + A D + QR Y ALV+GTP +G++ APL+KVLL DGK+ER+ +
Sbjct: 260 EKTADALADGTQQVLQRKYVALVMGTPRHPKGLLSAPLAKVLLQDGKSERLTVRAGPNTT 319
Query: 319 PRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVHNRW 378
Q+A+TEYRV+ G +W+EL PLT RKHQLRVHCAE LGTPIVGDYKYG H W
Sbjct: 320 SVQDALTEYRVIESCPQGFTWLELFPLTGRKHQLRVHCAEVLGTPIVGDYKYGRQAHQDW 379
Query: 379 KQMP 382
+P
Sbjct: 380 TPLP 383
>M7YVT4_TRIUA (tr|M7YVT4) RNA pseudourine synthase 4, mitochondrial OS=Triticum
urartu GN=TRIUR3_18246 PE=4 SV=1
Length = 468
Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 123/304 (40%), Positives = 178/304 (58%), Gaps = 13/304 (4%)
Query: 80 TAVNWIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKPMRKMRPNDVMKPG 139
TA+ W++ S+++ FR V+ + A S T + +R++ D + PG
Sbjct: 88 TAIRWVRRCCPHLPASLVQKLFRLRKVKKNAVTAETSSTDASAKQFRLRRVSAKDHLVPG 147
Query: 140 ARLHVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKG 199
L +PV++ E+ ++++ + N +EI +L+ L IYKD AIIV+NKPP +PV+G
Sbjct: 148 DTLFLPVNIQESPVAEK------ARKFDNRNEIDFLRSLEIYKDKAIIVVNKPPGMPVQG 201
Query: 200 NLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSA 259
+ + NS+D D P+LVHRLD++ SG+L+ GRT+ S S L +F
Sbjct: 202 GVGIKNSIDVLAPMFEENSSD-APRLVHRLDRDCSGVLVLGRTQLSASILHAIFR----- 255
Query: 260 KSSCKAWNDACEATYQR-YWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIE 318
+ + A D + QR Y ALV+GTP +G++ APL+KVLL DGK+ER+ +
Sbjct: 256 EKTADALADGTQQVLQRKYVALVMGTPRHPKGLLSAPLAKVLLQDGKSERLTVRAGPNTT 315
Query: 319 PRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVHNRW 378
Q+A+TEYRV+ G +W+EL PLT RKHQLRVHCAE LGTPIVGDYKYG H W
Sbjct: 316 SVQDALTEYRVIESCPRGFTWLELFPLTGRKHQLRVHCAEVLGTPIVGDYKYGRQAHQDW 375
Query: 379 KQMP 382
+P
Sbjct: 376 TPLP 379
>B9G227_ORYSJ (tr|B9G227) Putative uncharacterized protein OS=Oryza sativa subsp.
japonica GN=OsJ_28343 PE=2 SV=1
Length = 465
Score = 224 bits (570), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 122/304 (40%), Positives = 177/304 (58%), Gaps = 13/304 (4%)
Query: 80 TAVNWIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKPMRKMRPNDVMKPG 139
TA+ W++ S+++ FR V+ + A S +R++ D + PG
Sbjct: 85 TAIKWVRRCCPDLPTSLVQKLFRLRKVKKNVVTAEISSADASAEQHRLRRVSAKDQLMPG 144
Query: 140 ARLHVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKG 199
L +PV++ E+ ++++ + N +EI +L+ L IYKD AIIV+NKPP +PV+G
Sbjct: 145 DILFLPVNLKESSVAEKTKK------FDNRNEINFLRGLEIYKDEAIIVVNKPPGMPVQG 198
Query: 200 NLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSA 259
+ + NS+D + E P+LVHRLD++ SGIL+ GR + S S L +F
Sbjct: 199 GVGIKNSIDVLASMFEE-NSSEAPRLVHRLDRDCSGILVLGRNQLSTSMLHAIFR----- 252
Query: 260 KSSCKAWNDACEATYQR-YWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIE 318
+ + A D + QR Y ALVIGTP +G++ APL+K+LL DGK+ER+ + S
Sbjct: 253 EKTADALADGTQHVLQRKYVALVIGTPRHPKGLLSAPLAKILLQDGKSERLTIRASSNAA 312
Query: 319 PRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVHNRW 378
Q+A+TEYRV+ G +W+EL P T RKHQLRVHCAE LGTPIVGDYKYG H +W
Sbjct: 313 SVQDALTEYRVIESCPQGYTWLELFPRTGRKHQLRVHCAEVLGTPIVGDYKYGRQAHQKW 372
Query: 379 KQMP 382
+P
Sbjct: 373 MPLP 376
>B8BCS6_ORYSI (tr|B8BCS6) Putative uncharacterized protein OS=Oryza sativa subsp.
indica GN=OsI_30347 PE=2 SV=1
Length = 465
Score = 223 bits (569), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 122/304 (40%), Positives = 177/304 (58%), Gaps = 13/304 (4%)
Query: 80 TAVNWIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKPMRKMRPNDVMKPG 139
TA+ W++ S+++ FR V+ + A S +R++ D + PG
Sbjct: 85 TAIKWVRRCCPDLPTSLVQKLFRLRKVKKNVVTAEISSADASAEQHRLRRVSAKDQLMPG 144
Query: 140 ARLHVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKG 199
L +PV++ E+ ++++ + N +EI +L+ L IYKD AIIV+NKPP +PV+G
Sbjct: 145 DILFLPVNLKESSVAEKTKK------FDNRNEINFLRGLEIYKDEAIIVVNKPPGMPVQG 198
Query: 200 NLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSA 259
+ + NS+D + E P+LVHRLD++ SGIL+ GR + S S L +F
Sbjct: 199 GVGIKNSIDVLASMFEE-NSSEAPRLVHRLDRDCSGILVLGRNQLSTSMLHAIFR----- 252
Query: 260 KSSCKAWNDACEATYQR-YWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIE 318
+ + A D + QR Y ALVIGTP +G++ APL+K+LL DGK+ER+ + S
Sbjct: 253 EKTADALADGTQHVLQRKYVALVIGTPRHPKGLLSAPLAKILLQDGKSERLTVRASSNAA 312
Query: 319 PRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVHNRW 378
Q+A+TEYRV+ G +W+EL P T RKHQLRVHCAE LGTPIVGDYKYG H +W
Sbjct: 313 SVQDALTEYRVIESCPQGYTWLELFPRTGRKHQLRVHCAEVLGTPIVGDYKYGRQAHQKW 372
Query: 379 KQMP 382
+P
Sbjct: 373 MPLP 376
>M8ARA9_AEGTA (tr|M8ARA9) RNA pseudourine synthase 4, mitochondrial OS=Aegilops
tauschii GN=F775_07074 PE=4 SV=1
Length = 468
Score = 223 bits (569), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 123/304 (40%), Positives = 177/304 (58%), Gaps = 13/304 (4%)
Query: 80 TAVNWIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKPMRKMRPNDVMKPG 139
TA+ W++ S+++ FR V+ + A S T +R++ D + PG
Sbjct: 88 TAIRWVRRCCPHLPASLVQKLFRLRKVKKNAVTAETSSTDASAEQFRLRRVSAKDHLVPG 147
Query: 140 ARLHVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKG 199
L +PV++ E+ ++++ + N +EI +L+ L IYKD AIIV+NKPP +PV+G
Sbjct: 148 DTLFLPVNIQESPVAEKARK------FDNRNEIDFLRSLEIYKDKAIIVVNKPPGMPVQG 201
Query: 200 NLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSA 259
+ + NS+D D P+LVHRLD++ SG+L+ GRT+ S S L +F
Sbjct: 202 GVGIKNSIDVLAPMFEENSSD-APRLVHRLDRDCSGVLVLGRTQLSASILHAIFR----- 255
Query: 260 KSSCKAWNDACEATYQR-YWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIE 318
+ + A D + QR Y ALV+GTP +G++ APL+KVLL DGK+ER+ +
Sbjct: 256 EKTADALADGTQQVLQRKYVALVMGTPRHPKGLLSAPLAKVLLQDGKSERLTVRAGPNTT 315
Query: 319 PRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVHNRW 378
Q+A+TEYRV+ G +W+EL PLT RKHQLRVHCAE LGTPIVGDYKYG H W
Sbjct: 316 SVQDALTEYRVIESCPRGFTWLELFPLTGRKHQLRVHCAEVLGTPIVGDYKYGRQAHQDW 375
Query: 379 KQMP 382
+P
Sbjct: 376 TPLP 379
>I1QLT5_ORYGL (tr|I1QLT5) Uncharacterized protein OS=Oryza glaberrima PE=4 SV=1
Length = 465
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 121/304 (39%), Positives = 177/304 (58%), Gaps = 13/304 (4%)
Query: 80 TAVNWIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKPMRKMRPNDVMKPG 139
TA+ W++ S+++ FR V+ + A S +R++ D + PG
Sbjct: 85 TAIKWVRRCCPDLPTSLVQKLFRLRKVKKNVVTAEISSADASAEQHRLRRVSAKDQLMPG 144
Query: 140 ARLHVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKG 199
L +PV++ E+ ++++ + N +EI +L+ L IYKD AIIV+NKPP +PV+G
Sbjct: 145 DILFLPVNLKESSVAEKTKK------FDNRNEINFLRGLEIYKDEAIIVVNKPPGMPVQG 198
Query: 200 NLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSA 259
+ + NS+D + E P+LVHRLD++ SG+L+ GR + S S L +F
Sbjct: 199 GVGIKNSIDVLASMFEE-NSSEAPRLVHRLDRDCSGVLVLGRNQLSTSMLHAIFR----- 252
Query: 260 KSSCKAWNDACEATYQR-YWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIE 318
+ + A D + QR Y ALVIGTP +G++ APL+K+LL DGK+ER+ + S
Sbjct: 253 EKTADALADGTQHVLQRKYVALVIGTPRHPKGLLSAPLAKILLQDGKSERLTVRASSNAA 312
Query: 319 PRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVHNRW 378
Q+A+TEYRV+ G +W+EL P T RKHQLRVHCAE LGTPIVGDYKYG H +W
Sbjct: 313 SVQDALTEYRVIESCPQGYTWLELFPRTGRKHQLRVHCAEVLGTPIVGDYKYGRQAHQKW 372
Query: 379 KQMP 382
+P
Sbjct: 373 MPLP 376
>G7ZV99_MEDTR (tr|G7ZV99) RNA pseudourine synthase OS=Medicago truncatula
GN=MTR_023s0003 PE=4 SV=1
Length = 430
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 117/273 (42%), Positives = 165/273 (60%), Gaps = 10/273 (3%)
Query: 117 FTQKDERMKP-------MRKMRPNDVMKPGARLHVPVSMAETRISKRYDAIPSGTLYPNA 169
F K RM P +++ P D + G R+ +P S+ + L A
Sbjct: 70 FRLKQVRMLPRQQDDNKFKRVTPKDTLNSGDRIFLPNSVKQQIPLTPTPPKHESPLTLTA 129
Query: 170 DEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRL 229
+I +++ LVIYKD I+VLNKPP +PV+G + + S+D +YDY + P+LVHRL
Sbjct: 130 KQINFIRSLVIYKDPHILVLNKPPGMPVQGGINIKLSLDAVAAQSLNYDYSQPPRLVHRL 189
Query: 230 DKESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQR-YWALVIGTPNEK 288
D++ SGIL+ GRTK S + L +F S S+ + ND + QR YWALV+G P
Sbjct: 190 DRDCSGILVMGRTKTSTALLHSIFREKTSRASNEE--NDTEKIILQRRYWALVLGCPRRS 247
Query: 289 EGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSR 348
G+++APL KV++++GK++R+ + +S + Q AVTEYRV+ +G +W+EL PLT R
Sbjct: 248 GGVVNAPLGKVVVDNGKSDRITIVDNSALLSSQHAVTEYRVISSSSHGFTWLELSPLTGR 307
Query: 349 KHQLRVHCAEALGTPIVGDYKYGWFVHNRWKQM 381
KHQLRVHCAE LGTPIVGDYKYG H +W Q
Sbjct: 308 KHQLRVHCAEVLGTPIVGDYKYGRQAHKKWGQF 340
>K4B2X4_SOLLC (tr|K4B2X4) Uncharacterized protein OS=Solanum lycopersicum
GN=Solyc01g107580.2 PE=4 SV=1
Length = 467
Score = 220 bits (561), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 128/340 (37%), Positives = 191/340 (56%), Gaps = 34/340 (10%)
Query: 58 LSLPPFPGHPLPGASGQQ------------RDHVTAVNWIKYYFKGTWGSVIESHFRKGL 105
L+LPPF A G++ + +TA+ W++ S+++ FR
Sbjct: 59 LTLPPFTAAVNGAALGRELAGVKMDVNENSTNTMTALKWVQRCCPELPKSLVQKLFRLRQ 118
Query: 106 VQMEDLIAADSFTQKDERMKPMRKMRPNDVMKPGARLHVPVSMAETRISKRYDAIPSGTL 165
V+ DS +++R K ++ + M G R+ +P+++ + PS +
Sbjct: 119 VRR------DSSNVEEQRPK---RVSAKESMNVGDRIFLPITVQK---------FPSEKV 160
Query: 166 --YPNADEI-KYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEG 222
YP+++E K++ L +YKD+ IIV+NKPP +PV+G + + S+D S+ Y E
Sbjct: 161 VYYPSSEEERKFVHSLELYKDAEIIVVNKPPGMPVQGGIGIKRSLDELAAKYMSHQYSEA 220
Query: 223 PKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVI 282
P+LVHRLD++ SG+L+ GRT+ S S L +F + S + ++YWALVI
Sbjct: 221 PRLVHRLDRDCSGLLVMGRTQLSASALHSIFRE-KTFDSQNEDLESKKRILQKKYWALVI 279
Query: 283 GTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVEL 342
G P GII APL K++L++GK+ER+ + Q AVTEYR++G G +W+EL
Sbjct: 280 GCPRRSGGIISAPLGKLVLDNGKSERITIMSDVREPSAQYAVTEYRIIGSSEKGYTWLEL 339
Query: 343 RPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVHNRWKQMP 382
PLT RKHQLRVHCAEALGTPIVGDYKYGW H + K +P
Sbjct: 340 SPLTGRKHQLRVHCAEALGTPIVGDYKYGWQAHRKLKHLP 379
>B6U2M4_MAIZE (tr|B6U2M4) RNA binding protein OS=Zea mays PE=2 SV=1
Length = 439
Score = 220 bits (560), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 121/307 (39%), Positives = 185/307 (60%), Gaps = 15/307 (4%)
Query: 78 HVTAVNWIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMK-PMRKMRPNDVM 136
+ TA+ W+++ S+++ FR V+ ++L+ AD+ + ++ +R++ D +
Sbjct: 80 NATAIRWVRHCCPHVPASLVQKLFRLRKVK-KNLVTADTSSTDSITLQLRLRRVSAKDEL 138
Query: 137 KPGARLHVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLP 196
PG L +PV++ E+ ++++ + N +EI +L+ L IYKD AIIVLNKPP +P
Sbjct: 139 VPGDILFLPVNIQESSVTEKTKK------FGNKNEIDFLRDLEIYKDRAIIVLNKPPGMP 192
Query: 197 VKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNI 256
V+G + + NS+D + E P+LVHRLD++ SG+L+ GRT+ S S + +F
Sbjct: 193 VQGGVGIKNSIDILAPMFEN-GSSEVPRLVHRLDRDCSGVLVLGRTQFSASLMHAIFR-- 249
Query: 257 NSAKSSCKAWNDACEATYQR-YWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHS 315
+ + A D + QR Y ALVIG P +G++ APL+KV+L DG++ER+ + S
Sbjct: 250 ---EKTADALGDGTQQVLQRKYVALVIGRPRHPKGLLSAPLAKVVLQDGRSERLTVCAGS 306
Query: 316 TIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVH 375
Q+A+TEYRV+ G +W+EL P T RKHQLRVHCAE LGTPIVGDYKYG H
Sbjct: 307 NTASVQDALTEYRVIESFPQGYTWLELFPRTGRKHQLRVHCAEVLGTPIVGDYKYGRQAH 366
Query: 376 NRWKQMP 382
W +P
Sbjct: 367 QNWMPLP 373
>M1CF70_SOLTU (tr|M1CF70) Uncharacterized protein OS=Solanum tuberosum
GN=PGSC0003DMG400025766 PE=4 SV=1
Length = 467
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 127/340 (37%), Positives = 191/340 (56%), Gaps = 34/340 (10%)
Query: 58 LSLPPFP--------GHPLPGASGQQRDH----VTAVNWIKYYFKGTWGSVIESHFRKGL 105
L+LPPF G L G +++ +TA+ W++ S+++ FR
Sbjct: 59 LTLPPFTATVNGAALGRELAGVKMDVKENSTNTMTALKWVQRCCPELPKSLVQKLFRLRQ 118
Query: 106 VQMEDLIAADSFTQKDERMKPMRKMRPNDVMKPGARLHVPVSMAETRISKRYDAIPSGTL 165
V+ DS +++R K ++ + M G R+ +P+++ + PS +
Sbjct: 119 VRR------DSSNVEEQRPK---RVSAKESMNVGDRIFLPITVQK---------FPSEKV 160
Query: 166 --YPNADEI-KYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEG 222
YP+++E K++ L +YKD I+V+NKPP +PV+G + + S+D ++Y E
Sbjct: 161 VYYPSSEEERKFVHSLELYKDPEIVVVNKPPGMPVQGGIGIKRSLDELAAKYMRHEYSEA 220
Query: 223 PKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVI 282
P+LVHRLD++ SG+L+ GRT+ S S L +F + S + ++YWALVI
Sbjct: 221 PRLVHRLDRDCSGLLVMGRTQLSASALHSIFRE-KTFDSQNEDLESKKRILQKKYWALVI 279
Query: 283 GTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVEL 342
G P GII APL K++L++GK+ER+ + Q AVTEYR++G G +W+EL
Sbjct: 280 GCPRRSGGIISAPLGKLVLDNGKSERITIMSDVRAPSAQYAVTEYRIIGSSEKGYTWLEL 339
Query: 343 RPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVHNRWKQMP 382
PLT RKHQLRVHCAEALGTPIVGDYKYGW H + K +P
Sbjct: 340 SPLTGRKHQLRVHCAEALGTPIVGDYKYGWQAHRKLKHLP 379
>K3YR11_SETIT (tr|K3YR11) Uncharacterized protein OS=Setaria italica
GN=Si016705m.g PE=4 SV=1
Length = 597
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 121/304 (39%), Positives = 175/304 (57%), Gaps = 13/304 (4%)
Query: 80 TAVNWIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKPMRKMRPNDVMKPG 139
TA+ W++ S+++ FR V+ L A S T +R++ D + PG
Sbjct: 217 TAIRWVRRCCPHMPASLVQKLFRLRKVKRNLLTADTSSTDDIADQLWLRRVSAKDELVPG 276
Query: 140 ARLHVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKG 199
L +P ++ E+ +S++ + + +EI +L+ L IYKD AIIVLNKPP +PV+G
Sbjct: 277 DILFLPFNIQESSVSEKTKK------FGSKNEIDFLRSLEIYKDRAIIVLNKPPGMPVQG 330
Query: 200 NLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSA 259
+ + NS+D E P+LVHRLD++ SG+L+ GRT+ S S + +F
Sbjct: 331 GVGIKNSIDILAPLFED-GSSEAPRLVHRLDRDCSGVLVLGRTQLSASIMHAIFR----- 384
Query: 260 KSSCKAWNDACEATYQR-YWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIE 318
+ + A D + QR Y ALVIG P +G++ APL+K++L DGK+ER+ + S
Sbjct: 385 EKTADALADGTQQVLQRKYVALVIGRPRHSKGLLSAPLAKIVLQDGKSERLTVCAGSNPA 444
Query: 319 PRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVHNRW 378
Q+A+TEYRV+ G +W+EL P T RKHQLRVHCAE LGTPIVGDYKYG H W
Sbjct: 445 SVQDALTEYRVIESCPQGYTWLELFPRTGRKHQLRVHCAEVLGTPIVGDYKYGRQAHQNW 504
Query: 379 KQMP 382
+P
Sbjct: 505 MPLP 508
>B9HS61_POPTR (tr|B9HS61) Predicted protein (Fragment) OS=Populus trichocarpa
GN=POPTRDRAFT_201901 PE=4 SV=1
Length = 324
Score = 214 bits (544), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 110/246 (44%), Positives = 156/246 (63%), Gaps = 9/246 (3%)
Query: 136 MKPGARLHVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKL 195
M G R+ +P+S+ K+ + N +EI +++ L +YKD+AIIV+NKPP +
Sbjct: 1 MDVGDRIFLPISVKVLPAEKQ-------DCHCNEEEINFIRGLELYKDAAIIVVNKPPGM 53
Query: 196 PVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSN 255
PV+G + + S+D S DY E P+LVHRLD++ SGIL+ GRT+ S + L +F
Sbjct: 54 PVQGGIGIKRSLDELSASCFSSDYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHAIFRE 113
Query: 256 INSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHS 315
A S+ N ++YWALVIG+P +G+I APL KV++++GK++R+ + +S
Sbjct: 114 KTLAASNDDVGNKR-RILQRKYWALVIGSPRRPKGLISAPLGKVVVDNGKSDRITVVENS 172
Query: 316 TIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVH 375
Q AVT+YRV+ +G +W+EL PLT RKHQLRVHCAE LGTPIVGDYKY W H
Sbjct: 173 QNLSSQHAVTQYRVIESS-HGFTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYAWQAH 231
Query: 376 NRWKQM 381
WKQ+
Sbjct: 232 RNWKQL 237
>I1JB03_SOYBN (tr|I1JB03) Uncharacterized protein OS=Glycine max PE=4 SV=2
Length = 427
Score = 211 bits (537), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 104/256 (40%), Positives = 153/256 (59%), Gaps = 10/256 (3%)
Query: 123 RMKPMRKMRPNDVMKPGARLHVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYK 182
+ + +++ D + G R+ +P S+ + P +I +++ LVIYK
Sbjct: 91 QQQTFKRVAAKDTLNTGDRILLPQSVKVKQTPTHSHLTP--------QQINFIRTLVIYK 142
Query: 183 DSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRT 242
D AI+VLNKPP +PV+G + + S+D +Y Y + P+LVHRLD++ SGIL+ GRT
Sbjct: 143 DPAILVLNKPPGMPVQGGINIKRSLDAVAAASLNYGYSQPPRLVHRLDRDCSGILVMGRT 202
Query: 243 KDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLN 302
S + L +F S S +RYWALV+G P +G++ A L KV+++
Sbjct: 203 HTSTTVLHSIFREKTSRASD--DIGKEKRILQRRYWALVLGCPRRPKGLVTASLGKVVVD 260
Query: 303 DGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGT 362
+G+++R+ + +ST+ Q A+TEYRV+ G +W+EL PLT RKHQLRVHCAE LGT
Sbjct: 261 NGRSDRITIVDNSTLMSSQHAITEYRVIASSSQGYTWLELTPLTGRKHQLRVHCAEVLGT 320
Query: 363 PIVGDYKYGWFVHNRW 378
PIVGDYKYGW H +W
Sbjct: 321 PIVGDYKYGWQAHRKW 336
>J3LQB7_ORYBR (tr|J3LQB7) Uncharacterized protein OS=Oryza brachyantha
GN=OB03G32430 PE=4 SV=1
Length = 449
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 112/257 (43%), Positives = 157/257 (61%), Gaps = 13/257 (5%)
Query: 127 MRKMRPNDVMKPGARLHVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAI 186
+R++ D + PG + +PV E+ I+++ + N +EI +L+ L IYKD AI
Sbjct: 117 LRRVSAKDQLMPGDIIFLPVHPKESSIAEKTKK------FDNRNEIDFLRSLEIYKDEAI 170
Query: 187 IVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSV 246
IV+NKPP +PV+G + + NS+D + E P+LVHRLD++ SG+L+ GR + S
Sbjct: 171 IVINKPPGMPVQGGIGIKNSIDVLASIFEE-NSSEAPRLVHRLDRDCSGVLVLGRNQRST 229
Query: 247 SHLQWLFSNINSAKSSCKAWNDACEATYQR-YWALVIGTPNEKEGIIHAPLSKVLLNDGK 305
+ L F + + A D + QR Y ALVIGTP +G++ APL+KVLL DGK
Sbjct: 230 TMLHATFR-----EKTADALADGTQHVLQRKYLALVIGTPRHPKGLLSAPLAKVLLQDGK 284
Query: 306 TERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIV 365
+ER+ + S Q+A+TEYRV+ +G +W+EL P T RKHQLRVHCAE LGTPIV
Sbjct: 285 SERLTVRASSNAASVQDALTEYRVIEYCPHGYTWLELFPRTGRKHQLRVHCAEVLGTPIV 344
Query: 366 GDYKYGWFVHNRWKQMP 382
GDYKYG H W +P
Sbjct: 345 GDYKYGRQAHQNWMPLP 361
>J3MVI1_ORYBR (tr|J3MVI1) Uncharacterized protein OS=Oryza brachyantha
GN=OB09G10090 PE=4 SV=1
Length = 441
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 112/257 (43%), Positives = 156/257 (60%), Gaps = 13/257 (5%)
Query: 127 MRKMRPNDVMKPGARLHVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAI 186
+R++ D + PG L +PV E+ ++++ + N + I +L+ L IYKD AI
Sbjct: 110 LRRVSAKDQLMPGDILFLPVHPKESSVAEKTKK------FDNRNGIDFLRSLEIYKDEAI 163
Query: 187 IVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSV 246
IV+NKPP +PV+G + NS+D + E P+LVHRLD++ SG+L+ GR + S
Sbjct: 164 IVINKPPGMPVQGGTGIKNSIDVLASMFEE-NSSEAPRLVHRLDRDCSGVLVLGRNQRST 222
Query: 247 SHLQWLFSNINSAKSSCKAWNDACEATYQR-YWALVIGTPNEKEGIIHAPLSKVLLNDGK 305
+ L F + + A D + QR Y ALVIGTP +G++ APL+KVLL DGK
Sbjct: 223 TMLHATFR-----EKTADALADGTQHVLQRKYLALVIGTPRHPKGLLSAPLAKVLLQDGK 277
Query: 306 TERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIV 365
+ER+ + S P Q+A+TEYRV+ +G +W+EL P T RKHQLRVHCAE LGTPIV
Sbjct: 278 SERLTVRASSNAAPVQDALTEYRVIEYCPHGYTWLELFPRTGRKHQLRVHCAEVLGTPIV 337
Query: 366 GDYKYGWFVHNRWKQMP 382
GDYKYG H W +P
Sbjct: 338 GDYKYGRQAHQNWMPLP 354
>M0SLI3_MUSAM (tr|M0SLI3) Uncharacterized protein OS=Musa acuminata subsp.
malaccensis PE=4 SV=1
Length = 588
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 126/336 (37%), Positives = 186/336 (55%), Gaps = 22/336 (6%)
Query: 58 LSLPPFP--------GHPLPGASG-QQRDHVTAVNWIKYYFKGTWGSVIESHFRKGLV-- 106
L+LPPF G L G + + ++A+ W++ S++ FR V
Sbjct: 174 LTLPPFSPPIDCVSVGKELAGRRPVAETEPMSALKWVRRCCPHLPMSLVHKLFRLRQVRR 233
Query: 107 -QMEDLIAADSFTQKDERMKPMRKMRPNDVMKPGARLHVPVSMAETRISKRYDAIPSGTL 165
Q ++ + T ++ +R++ D M PG + +PVS+ Y +
Sbjct: 234 DQTAQVVYNGNATPAEQGR--LRRVSVKDAMMPGEVIFLPVSVQNLTTEGSYRS------ 285
Query: 166 YPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKL 225
N EI +++ L +YKD AIIV+NKPP +PV+G + + SMD Y+ E P+L
Sbjct: 286 KYNDVEISFVRSLELYKDEAIIVVNKPPGMPVQGGVGIRYSMDALAANCLKYECSEPPRL 345
Query: 226 VHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTP 285
VHRLD++SSG+L+ GRT+ S + L LF S + N ++Y ALVIGTP
Sbjct: 346 VHRLDRDSSGVLVLGRTQTSATILHSLFREKTSG-ALADDINVTQRPLQRKYLALVIGTP 404
Query: 286 NEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPL 345
+G+I APL+K++L DGK+ER+++A Q A+TEY+V+ + +W+EL PL
Sbjct: 405 RHSKGLISAPLAKIVLEDGKSERIIIADDGKSASSQHALTEYKVIRSS-HDYTWLELFPL 463
Query: 346 TSRKHQLRVHCAEALGTPIVGDYKYGWFVHNRWKQM 381
T RKHQLRVHCAE LGTPIVGD+KYG H +W+ M
Sbjct: 464 TGRKHQLRVHCAEVLGTPIVGDHKYGRHAHRKWEPM 499
>M4E0X7_BRARP (tr|M4E0X7) Uncharacterized protein OS=Brassica rapa subsp.
pekinensis GN=Bra022424 PE=4 SV=1
Length = 474
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 112/306 (36%), Positives = 175/306 (57%), Gaps = 15/306 (4%)
Query: 73 GQQRDHVTAVNWIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKPMRKMRP 132
G TA+ WI ++++ FR V+ + ++ Q+ + ++++
Sbjct: 84 GSTDGSTTALRWILRCRPDLPRNLVQKLFRLRQVRRQVVVPMSCELQRSQ----LKRVAA 139
Query: 133 NDVMKPGARLHVPVSMAETRISKRYDAIPSGT---LYPNADEIKYLQRLVIYKDSAIIVL 189
+ + G R+++P+S+ DA P + +E K++ LV+YKD AIIVL
Sbjct: 140 KESLNVGDRIYLPLSVGN-------DAPPPAKKERFRCSEEERKFVCSLVLYKDPAIIVL 192
Query: 190 NKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHL 249
NKP + V+G V S+D ++D E P+LVHRLD++ SG+L+ GRT+ + + L
Sbjct: 193 NKPHGMAVQGGTGVKTSIDELAATCLTFDKSESPRLVHRLDRDCSGLLVLGRTQTAATLL 252
Query: 250 QWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERV 309
+F S S+ + ++ ++Y ALVIG P + G I APL KV+++DGK++R+
Sbjct: 253 HSIFREKTSGASAYGVKKN-IKSLKRKYLALVIGCPRRQRGQISAPLRKVVVDDGKSDRI 311
Query: 310 MLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYK 369
+ + + Q A+TEYRV+ +G +W+ELRPLT RKHQLRVHCAE LGTPI+GDYK
Sbjct: 312 TVNVNGELVSTQHAITEYRVVESSPHGYTWLELRPLTGRKHQLRVHCAEVLGTPILGDYK 371
Query: 370 YGWFVH 375
YGW H
Sbjct: 372 YGWQAH 377
>D8SN49_SELML (tr|D8SN49) Putative uncharacterized protein OS=Selaginella
moellendorffii GN=SELMODRAFT_121195 PE=3 SV=1
Length = 355
Score = 200 bits (509), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 99/213 (46%), Positives = 136/213 (63%), Gaps = 1/213 (0%)
Query: 167 PNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLV 226
P +EI+ L+ V+YKD +IVLNKPP LPV+G V S+ ++Y E P+LV
Sbjct: 28 PTEEEIEQLKDAVLYKDEDLIVLNKPPGLPVQGGSKVERSLVSMMSLALQFEYKEPPRLV 87
Query: 227 HRLDKESSGILLFGRTKDSVSHLQ-WLFSNINSAKSSCKAWNDACEATYQRYWALVIGTP 285
HRLDK+ SG+++ GRT +S +Q +L S N S + ++Y ALVIG+P
Sbjct: 88 HRLDKDVSGVMILGRTYESTVKIQSFLCSKDNLMPSVITTQGSVGKGLDRKYIALVIGSP 147
Query: 286 NEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPL 345
+G I APL K++L DGK++RV++A E A+TEY+VL + GC+W++LRPL
Sbjct: 148 TADKGFISAPLLKMVLEDGKSDRVLIAADPKSENAIPAITEYQVLKRSVLGCTWLQLRPL 207
Query: 346 TSRKHQLRVHCAEALGTPIVGDYKYGWFVHNRW 378
T RKHQLRVHCA+ LG PIVGD KYG+ H +W
Sbjct: 208 TGRKHQLRVHCAQGLGLPIVGDMKYGFNTHKKW 240
>D8SR68_SELML (tr|D8SR68) Putative uncharacterized protein OS=Selaginella
moellendorffii GN=SELMODRAFT_123269 PE=3 SV=1
Length = 355
Score = 200 bits (508), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 99/213 (46%), Positives = 136/213 (63%), Gaps = 1/213 (0%)
Query: 167 PNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLV 226
P +EI+ L+ V+YKD +IVLNKPP LPV+G V S+ ++Y E P+LV
Sbjct: 28 PTEEEIEQLKDAVLYKDEDLIVLNKPPGLPVQGGSKVERSLVSMMSLALQFEYKEPPRLV 87
Query: 227 HRLDKESSGILLFGRTKDSVSHLQ-WLFSNINSAKSSCKAWNDACEATYQRYWALVIGTP 285
HRLDK+ SG+++ GRT +S +Q +L S N S + ++Y ALVIG+P
Sbjct: 88 HRLDKDVSGVMILGRTYESTVKIQSFLCSKDNLMPSVITIQGSVGKGLDRKYIALVIGSP 147
Query: 286 NEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPL 345
+G I APL K++L DGK++RV++A E A+TEY+VL + GC+W++LRPL
Sbjct: 148 TADKGFISAPLLKMVLEDGKSDRVLIAADPKSENAIPAITEYQVLKRSVLGCTWLQLRPL 207
Query: 346 TSRKHQLRVHCAEALGTPIVGDYKYGWFVHNRW 378
T RKHQLRVHCA+ LG PIVGD KYG+ H +W
Sbjct: 208 TGRKHQLRVHCAQGLGLPIVGDMKYGFNTHKKW 240
>R0HY69_9BRAS (tr|R0HY69) Uncharacterized protein OS=Capsella rubella
GN=CARUB_v10013603mg PE=4 SV=1
Length = 476
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 111/300 (37%), Positives = 174/300 (58%), Gaps = 17/300 (5%)
Query: 81 AVNWIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKP-MRKMRPNDVMKPG 139
A+ WI ++++ FR V+ E ++ D DE + ++++ + + G
Sbjct: 92 ALRWILRCRPDLPRTLVQKLFRLRQVRREMSVSCDG----DEVQRSQLKRVAAKESLNVG 147
Query: 140 ARLHVPVSMAETRISKRYDAIP----SGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKL 195
R+++P+S+ DA P + + +E K++ LV+YKD +IIVLNKP +
Sbjct: 148 DRIYLPLSVDN-------DAPPPPAKKESFRCSEEERKFVCSLVLYKDPSIIVLNKPHGM 200
Query: 196 PVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSN 255
V+G + S+D ++D E P+LVHRLD++ SG+L+ RT+ + + L +F
Sbjct: 201 AVQGGTGIKTSIDELAATCLTFDKSESPRLVHRLDRDCSGLLVLARTQTAATVLHSIFRE 260
Query: 256 INSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHS 315
S S+ + ++ ++Y ALVIG P + G I APL KV+++DGK++R+ + +
Sbjct: 261 KTSGASAYGVKKNI-KSLKRKYMALVIGCPRRQRGQISAPLRKVVVDDGKSDRITVNDNG 319
Query: 316 TIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVH 375
+ Q A+TEYRV+ +G +W+ELRPLT RKHQLRVHCAE LGTPIVGDYKYGW H
Sbjct: 320 ELVSTQHAITEYRVIESSPHGYTWLELRPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAH 379
>D7L9Z2_ARALL (tr|D7L9Z2) Pseudouridine synthase family protein OS=Arabidopsis
lyrata subsp. lyrata GN=ARALYDRAFT_318699 PE=4 SV=1
Length = 477
Score = 197 bits (500), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 174/302 (57%), Gaps = 16/302 (5%)
Query: 79 VTAVNWIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKPMRKMRPNDVMKP 138
TA+ WI ++++ FR V+ + ++ D + ++K ++ + +
Sbjct: 90 TTALRWILRCRPDLPRTLVQKLFRLRQVRRQMSLSVDGHELQRSQLK---RVAAKESLNV 146
Query: 139 GARLHVPVSMAETRISKRYDAIPS-----GTLYPNADEIKYLQRLVIYKDSAIIVLNKPP 193
G R+++P+S+ D P+ + + +E K++ LV+YKD AIIVLNKP
Sbjct: 147 GDRIYLPLSVDN-------DTPPTPPAKKESFQCSEEERKFVCSLVLYKDPAIIVLNKPH 199
Query: 194 KLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLF 253
L V+G + S+D ++D E P+LVHRLD++ SG+L+ RT+ + + L +F
Sbjct: 200 GLAVQGGSGIKTSIDELAATCLTFDKSESPRLVHRLDRDCSGLLVLARTQTAATVLHSIF 259
Query: 254 SNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAH 313
+ +S ++ ++Y ALVIG P ++G I APL KV+++DGK++R+ +
Sbjct: 260 RE-KTCGASAYGVKKNIKSLKRKYMALVIGCPRRQKGQISAPLRKVVVDDGKSDRITVND 318
Query: 314 HSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWF 373
+ + Q A+TEY+V+ +G +W+ELRPLT RKHQLRVHCAE LGTPI+GDYKYGW
Sbjct: 319 NGELVSTQHAITEYKVIESSPHGYTWLELRPLTGRKHQLRVHCAEVLGTPILGDYKYGWQ 378
Query: 374 VH 375
H
Sbjct: 379 AH 380
>A9RZN1_PHYPA (tr|A9RZN1) Predicted protein (Fragment) OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_122050 PE=3 SV=1
Length = 283
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 102/202 (50%), Positives = 127/202 (62%), Gaps = 19/202 (9%)
Query: 182 KDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGR 241
+D+ IIV+NKP L V+G V S+D SY+Y+EGP+LVHRLDKE+SG L+ GR
Sbjct: 1 QDAEIIVINKPSGLAVQGGSDVVKSLDSMMEAALSYNYNEGPRLVHRLDKETSGALVLGR 60
Query: 242 TKDSVSHLQWLFSN----INSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLS 297
T S LQ L N I+ A C Y ALVIG P +KEG I APL+
Sbjct: 61 THQSTVFLQALLRNKTEKISQAPGRC-------------YLALVIGVPEKKEGRISAPLA 107
Query: 298 KVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKI-NGCSWVELRPLTSRKHQLRVHC 356
KV+ + GK +++ + H S QEA+T+Y+VLG + GCSW+ELRPLT RKHQ+RVHC
Sbjct: 108 KVVSDSGKLDKMRVVHGSHPNA-QEAITDYKVLGSSLFAGCSWLELRPLTGRKHQIRVHC 166
Query: 357 AEALGTPIVGDYKYGWFVHNRW 378
AE LG PIVGDYKYGW W
Sbjct: 167 AEVLGMPIVGDYKYGWRALRLW 188
>M0W6Q6_HORVD (tr|M0W6Q6) Uncharacterized protein OS=Hordeum vulgare var.
distichum PE=4 SV=1
Length = 425
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 97/208 (46%), Positives = 131/208 (62%), Gaps = 7/208 (3%)
Query: 176 QRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSG 235
++ + +D AIIV+NKPP +PV+G + + NS+D D P+LVHRLD++ SG
Sbjct: 135 EQFRLRRDKAIIVVNKPPGMPVQGGVGIKNSIDVLAPMFEENSSD-APRLVHRLDRDCSG 193
Query: 236 ILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQR-YWALVIGTPNEKEGIIHA 294
+L+ GRT+ S S L +F + + A D + QR Y ALV+GTP +G++ A
Sbjct: 194 VLVLGRTQLSASILHAIFR-----EKTADALADGTQQVLQRKYVALVMGTPRHPKGLLSA 248
Query: 295 PLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQLRV 354
PL+KVLL DGK+ER+ + Q+A+TEYRV+ G +W+EL PLT RKHQLRV
Sbjct: 249 PLAKVLLQDGKSERLTVRAGPNTTSVQDALTEYRVIESCPQGFTWLELFPLTGRKHQLRV 308
Query: 355 HCAEALGTPIVGDYKYGWFVHNRWKQMP 382
HCAE LGTPIVGDYKYG H W +P
Sbjct: 309 HCAEVLGTPIVGDYKYGRQAHQDWTPLP 336
>B9N0H4_POPTR (tr|B9N0H4) Predicted protein (Fragment) OS=Populus trichocarpa
GN=POPTRDRAFT_681053 PE=2 SV=1
Length = 177
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 74/85 (87%), Positives = 81/85 (95%)
Query: 299 VLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAE 358
VLL+DGKTERV+LA HS++EP ++AVTEYRVLGP INGCSW+ELRPLTSRKHQLRVHCAE
Sbjct: 1 VLLDDGKTERVVLAQHSSLEPSRDAVTEYRVLGPTINGCSWIELRPLTSRKHQLRVHCAE 60
Query: 359 ALGTPIVGDYKYGWFVHNRWKQMPR 383
ALGTPIVGDYKYGWFVH RWKQMPR
Sbjct: 61 ALGTPIVGDYKYGWFVHRRWKQMPR 85
>C4J8T2_MAIZE (tr|C4J8T2) Uncharacterized protein OS=Zea mays PE=2 SV=1
Length = 272
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 85/189 (44%), Positives = 117/189 (61%), Gaps = 7/189 (3%)
Query: 195 LPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFS 254
+PV+G + + NS+D + E P+LVHRLD++ SG+L+ GRT+ S S + +F
Sbjct: 1 MPVQGGVGIKNSIDILAPMFEN-GSSEVPRLVHRLDRDCSGVLVLGRTQFSASLMHAIFR 59
Query: 255 NINSAKSSCKAWNDACEATYQR-YWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAH 313
+ + A D + QR Y ALVIG P +G++ APL+KV+L DG++ER+ +
Sbjct: 60 -----EKTADALGDGTQQVLQRKYVALVIGRPRHPKGLLSAPLAKVVLQDGRSERLTVCA 114
Query: 314 HSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWF 373
S Q+A+TEYRV+ G +W+EL P T RKHQLRVHCAE LGTPIVGDYKYG
Sbjct: 115 GSNTASVQDALTEYRVIESFPQGYTWLELFPRTGRKHQLRVHCAEVLGTPIVGDYKYGRQ 174
Query: 374 VHNRWKQMP 382
H W +P
Sbjct: 175 AHQNWMPLP 183
>M0W6Q7_HORVD (tr|M0W6Q7) Uncharacterized protein OS=Hordeum vulgare var.
distichum PE=4 SV=1
Length = 254
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 81/163 (49%), Positives = 106/163 (65%), Gaps = 6/163 (3%)
Query: 221 EGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQR-YWA 279
+ P+LVHRLD++ SG+L+ GRT+ S S L +F + + A D + QR Y A
Sbjct: 8 DAPRLVHRLDRDCSGVLVLGRTQLSASILHAIFR-----EKTADALADGTQQVLQRKYVA 62
Query: 280 LVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSW 339
LV+GTP +G++ APL+KVLL DGK+ER+ + Q+A+TEYRV+ G +W
Sbjct: 63 LVMGTPRHPKGLLSAPLAKVLLQDGKSERLTVRAGPNTTSVQDALTEYRVIESCPQGFTW 122
Query: 340 VELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVHNRWKQMP 382
+EL PLT RKHQLRVHCAE LGTPIVGDYKYG H W +P
Sbjct: 123 LELFPLTGRKHQLRVHCAEVLGTPIVGDYKYGRQAHQDWTPLP 165
>K4A221_SETIT (tr|K4A221) Uncharacterized protein OS=Setaria italica
GN=Si032918m.g PE=4 SV=1
Length = 329
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 89/252 (35%), Positives = 140/252 (55%), Gaps = 13/252 (5%)
Query: 80 TAVNWIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKPMRKMRPNDVMKPG 139
TA+ W++ S+++ FR V+ L A S T +R++ D + PG
Sbjct: 85 TAIRWVRRCCPHMPASLVQKLFRLRKVKRNLLTADTSSTDGIADQLRLRRVSAKDELVPG 144
Query: 140 ARLHVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKG 199
L +P ++ E+ +S++ + + +EI +L+ L IYKD AIIVLNKPP +PV+G
Sbjct: 145 DILFLPFNIQESSVSEKTKK------FGSKNEIDFLRSLEIYKDRAIIVLNKPPGMPVQG 198
Query: 200 NLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSA 259
+ + NS+D E P+LVHRLD++ SG+L+ GRT+ S S + +F
Sbjct: 199 GVGIKNSIDILAPLFED-GSSEAPRLVHRLDRDCSGVLVLGRTQLSASIMHAIFR----- 252
Query: 260 KSSCKAWNDACEATYQR-YWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIE 318
+ + A D + QR Y ALVIG P +G++ APL+K++L DGK+ER+ + S
Sbjct: 253 EKTADALADGTQQVLQRKYVALVIGRPRHPKGLLSAPLAKIVLQDGKSERLTVCAGSNPA 312
Query: 319 PRQEAVTEYRVL 330
Q+A+TEYRV+
Sbjct: 313 SVQDALTEYRVI 324
>F4QCT4_DICFS (tr|F4QCT4) Putative ribosomal large subunit pseudouridine synthase
C protein OS=Dictyostelium fasciculatum (strain SH3)
GN=DFA_11427 PE=3 SV=1
Length = 720
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 100/323 (30%), Positives = 155/323 (47%), Gaps = 47/323 (14%)
Query: 84 WIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQK---DERMKPMRKMRPNDVMKPGA 140
W++ F S+I RK E + A D F Q D R + +D + G+
Sbjct: 343 WLRIQFPVMTHSLICKLLRK-----EVITATDEFHQNGLDDVAASDKRVLEQSDRTEAGS 397
Query: 141 RLHVPVSMA-ETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKG 199
+++P A E R++ R P + + EI ++ ++YKD ++V+NKPP L V+G
Sbjct: 398 WIYIPAKYAKEQRVADRES--PEKYIRLSDAEIAAIRNSILYKDDDLLVINKPPGLSVQG 455
Query: 200 NLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSN---- 255
+ +D ++ DE P+LVHRLDK++SGIL+ GR + + + + F
Sbjct: 456 GTGLKKHLDMMLSHL-KFEADETPRLVHRLDKDTSGILILGRNRTATTAMADKFEQKLKR 514
Query: 256 ---------------------------INSAKSSCKAWNDACEATYQRYWALVIGTPNEK 288
+ K++ + D + + YWAL+ TPN +
Sbjct: 515 RSDREVKKEKKDKKDDSNNNNNNNYSSKKTTKTTVEEMKDD-NSIIKTYWALLTSTPNPR 573
Query: 289 EGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSR 348
EG I APL K++ N + ++A T + A+TEYRV+ + S+V L P T R
Sbjct: 574 EGRIRAPLQKIVENG---QEKVVATKETGNGAKLAITEYRVIENSMADTSFVALWPETGR 630
Query: 349 KHQLRVHCAEALGTPIVGDYKYG 371
HQLRVHCA LG+PI+GD KYG
Sbjct: 631 THQLRVHCASILGSPIIGDVKYG 653
>M1CF74_SOLTU (tr|M1CF74) Uncharacterized protein OS=Solanum tuberosum
GN=PGSC0003DMG400025766 PE=4 SV=1
Length = 231
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/144 (49%), Positives = 90/144 (62%), Gaps = 1/144 (0%)
Query: 239 FGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSK 298
GRT+ S S L +F + S + ++YWALVIG P GII APL K
Sbjct: 1 MGRTQLSASALHSIFRE-KTFDSQNEDLESKKRILQKKYWALVIGCPRRSGGIISAPLGK 59
Query: 299 VLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAE 358
++L++GK+ER+ + Q AVTEYR++G G +W+EL PLT RKHQLRVHCAE
Sbjct: 60 LVLDNGKSERITIMSDVRAPSAQYAVTEYRIIGSSEKGYTWLELSPLTGRKHQLRVHCAE 119
Query: 359 ALGTPIVGDYKYGWFVHNRWKQMP 382
ALGTPIVGDYKYGW H + K +P
Sbjct: 120 ALGTPIVGDYKYGWQAHRKLKHLP 143
>R5Q5J4_9PROT (tr|R5Q5J4) Pseudouridine synthase OS=Acetobacter sp. CAG:977
GN=BN820_00370 PE=4 SV=1
Length = 333
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 85/201 (42%), Positives = 114/201 (56%), Gaps = 22/201 (10%)
Query: 171 EIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLD 230
+ +++Q L+IYKD +IVLNKP L V+G + +D ++ DE P+LVHRLD
Sbjct: 90 DAEFVQSLIIYKDKDVIVLNKPSGLAVQGGSGLKRHLDGMLSAL-RFEKDENPRLVHRLD 148
Query: 231 KESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEG 290
K++SG+L+ GRT + + L F + N+ K YWALV+G P KEG
Sbjct: 149 KDTSGVLVLGRTAAATAKLAEAFRSRNAKKI---------------YWALVVGNPEMKEG 193
Query: 291 IIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKH 350
I+A L KV G E V + ++ Q AVT YRV+ SW+E+ PLT R H
Sbjct: 194 KINAKLLKVSGEQG-GESVKV----DMKNGQNAVTLYRVVDEAFKKASWLEMMPLTGRTH 248
Query: 351 QLRVHCAEALGTPIVGDYKYG 371
QLRVHCA +G PIVGD KYG
Sbjct: 249 QLRVHCA-YMGHPIVGDGKYG 268
>Q2G4F0_NOVAD (tr|Q2G4F0) Pseudouridine synthase OS=Novosphingobium
aromaticivorans (strain DSM 12444) GN=Saro_2837 PE=3
SV=1
Length = 436
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 81/202 (40%), Positives = 112/202 (55%), Gaps = 22/202 (10%)
Query: 170 DEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRL 229
++I+ + +V+ KD A IVLNKPP L +G H +D + + + P+LVHRL
Sbjct: 95 EQIQLAESMVLEKDRAAIVLNKPPGLATQGGSGTHEHVDGLLDAYVN-EGEARPRLVHRL 153
Query: 230 DKESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKE 289
DK++SG+LL RT S + FS C + + YWALV+G P+ K+
Sbjct: 154 DKDTSGVLLIARTPGSAAFFSKRFS---------------CRSARKIYWALVVGVPDVKD 198
Query: 290 GIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRK 349
G+I PL+K G E++M+ Q A + YRV+ N +WVEL+PLT R
Sbjct: 199 GLIELPLAKQPGTGG--EKMMVDESGQ---GQSARSRYRVISRAGNAAAWVELQPLTGRT 253
Query: 350 HQLRVHCAEALGTPIVGDYKYG 371
HQLRVH A A+G PIVGD KYG
Sbjct: 254 HQLRVHMA-AIGHPIVGDGKYG 274
>N1MWV4_9SPHN (tr|N1MWV4) Ribosomal large subunit pseudouridine synthase C
OS=Sphingobium japonicum BiD32 GN=EBBID32_41130 PE=4
SV=1
Length = 464
Score = 137 bits (344), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 89/240 (37%), Positives = 126/240 (52%), Gaps = 24/240 (10%)
Query: 132 PNDVMKPGARLHVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNK 191
P D + G + VP + A+ S+R A + + DEI Y+Q +VI++D+ IV+NK
Sbjct: 152 PGDRIAEGQMIRVPPAEAKASASER-PAKRAMVIDLTPDEIAYVQEMVIHRDAQAIVINK 210
Query: 192 PPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQW 251
PP L +G +D ++ + PKLVHRLDK++SG LL R+ + +H
Sbjct: 211 PPGLATQGGTKTDEHVDKLLDGLI-FNAESRPKLVHRLDKDTSGALLLARSSRAAAHFAK 269
Query: 252 LFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVML 311
FS+ + K YWALVIG P+ +G+I PL+K G E++ +
Sbjct: 270 AFSSRTARKV---------------YWALVIGVPSINDGMIELPLAKQPGTGG--EKMHV 312
Query: 312 AHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKYG 371
+ R T YRV+ N +WVEL+P T R HQLRVH A A+G PIVGD KYG
Sbjct: 313 DEAEGLPAR----TRYRVIERAGNRAAWVELQPYTGRTHQLRVHLA-AIGHPIVGDGKYG 367
>D3BJX8_POLPA (tr|D3BJX8) Probable ribosomal large subunit pseudouridine synthase
C protein OS=Polysphondylium pallidum GN=PPL_08858 PE=3
SV=1
Length = 702
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 89/277 (32%), Positives = 141/277 (50%), Gaps = 41/277 (14%)
Query: 128 RKMRPNDVMKPGARLHVPV-SMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAI 186
+++ ND + G ++VP+ ++ E R++ R + P+ + +EIK ++ V+YKD +
Sbjct: 374 KQVELNDRLVTGQWVNVPMKALKEQRLADRKE--PTKYARLSDEEIKEIRDSVLYKDDQL 431
Query: 187 IVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSV 246
+++NKP L V+G + +D ++ +E P+L HRLD+E+SGIL+ RT+ +
Sbjct: 432 LIINKPQGLSVQGGTGLKKHLDMMMSHL-KFELEEAPRLCHRLDRETSGILILARTRKAA 490
Query: 247 SHLQWLFS--------------------------------NINSAKSSCKAWNDACEATY 274
+ + F S + +D
Sbjct: 491 TAMADKFEMKLKRRTTRQDRDKKDKQKKDGSGSGSSSKKDKDRSGGEDEELRDD--NGIR 548
Query: 275 QRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKI 334
+ YWAL+ TPN KEG I APL KV+ DG E +++A T + + A+TEY+V+ +
Sbjct: 549 KTYWALLTSTPNPKEGRIRAPLKKVV-QDG--EEMVIATKETGDGAKLAITEYKVVESSL 605
Query: 335 NGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKYG 371
S+V L P T R HQLRVHCA L +PIVGD KYG
Sbjct: 606 TNASFVSLWPETGRTHQLRVHCASILSSPIVGDKKYG 642
>M1B240_SOLTU (tr|M1B240) Uncharacterized protein OS=Solanum tuberosum
GN=PGSC0003DMG400013566 PE=4 SV=1
Length = 165
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 60/74 (81%), Positives = 65/74 (87%)
Query: 310 MLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYK 369
MLA S +E EAVTEYR+LGP INGCSW+ELRP TSRKHQ+RVHCAEALGTPIVGDYK
Sbjct: 1 MLAQQSGLEASDEAVTEYRLLGPMINGCSWIELRPHTSRKHQIRVHCAEALGTPIVGDYK 60
Query: 370 YGWFVHNRWKQMPR 383
YGWFVH +WKQMPR
Sbjct: 61 YGWFVHRKWKQMPR 74
>F1ZBM1_9SPHN (tr|F1ZBM1) Pseudouridine synthase OS=Novosphingobium
nitrogenifigens DSM 19370 GN=Y88_3224 PE=3 SV=1
Length = 436
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 87/222 (39%), Positives = 115/222 (51%), Gaps = 33/222 (14%)
Query: 161 PSGTLYPNA-----------DEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDX 209
P GT P + +E+ +R+V+ +D A IVLNKPP L +G H+ +D
Sbjct: 72 PGGTQAPGSRGPRTRKPLTEEEMALAERIVLTQDRAAIVLNKPPGLATQGGSGTHSHVDG 131
Query: 210 XXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDA 269
D D P+LVHRLDK++SG+LL RT S ++ FS ++ K
Sbjct: 132 LLDAYAG-DNDPRPRLVHRLDKDTSGVLLIARTPGSAAYFSRHFSGRSAKKI-------- 182
Query: 270 CEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRV 329
YWALV+G P +G I PL+K G E++M+ Q A T YRV
Sbjct: 183 -------YWALVMGIPEINDGYIDLPLAKQPGTGG--EKMMVDESGE---GQTARTRYRV 230
Query: 330 LGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKYG 371
+ N +WVEL+PLT R HQLRVH A A+G PIVGD KYG
Sbjct: 231 IDRAGNRAAWVELQPLTGRTHQLRVHMA-AIGHPIVGDGKYG 271
>Q1NAE1_9SPHN (tr|Q1NAE1) Pseudouridine synthase (Fragment) OS=Sphingomonas sp.
SKA58 GN=SKA58_04531 PE=3 SV=1
Length = 394
Score = 134 bits (336), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 87/240 (36%), Positives = 121/240 (50%), Gaps = 25/240 (10%)
Query: 132 PNDVMKPGARLHVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNK 191
P D + G + VP + + + R L P DEI Y Q +VI++D+ IV+NK
Sbjct: 135 PGDRISEGQMIRVPPAEQKPDAADRPKRARIVDLTP--DEISYAQDMVIHRDAQAIVINK 192
Query: 192 PPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQW 251
PP L +G +D +D + PKLVHRLDK++SG LL RT + +H
Sbjct: 193 PPGLATQGGTKTDEHVDKLLDALL-FDAESRPKLVHRLDKDTSGALLLARTSRAAAHFAK 251
Query: 252 LFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVML 311
FS+ + K YWALV+G P+ ++G+I P++K G+
Sbjct: 252 AFSSRTARKV---------------YWALVMGVPSIEDGMIELPIAKQPGTGGEK----- 291
Query: 312 AHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKYG 371
H E A + YRV+ N +W+EL+P T R HQLRVH A A+G PIVGD KYG
Sbjct: 292 -MHVDEEEGLPARSRYRVIERAGNRAAWIELQPYTGRTHQLRVHMA-AIGHPIVGDGKYG 349
>A5PEL5_9SPHN (tr|A5PEL5) Pseudouridine synthase OS=Erythrobacter sp. SD-21
GN=ED21_31224 PE=3 SV=1
Length = 376
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 79/201 (39%), Positives = 112/201 (55%), Gaps = 22/201 (10%)
Query: 171 EIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLD 230
EI+ + ++I + + +V+NKPP L +G N +D ++ P+LVHRLD
Sbjct: 88 EIEQAEAMLIEQTKSALVINKPPGLATQGGTNTFNHVDGLLDAYMEEGEEQRPRLVHRLD 147
Query: 231 KESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEG 290
K++SGILL RT S + FS S +S+ K YWALV+G P+ ++G
Sbjct: 148 KDTSGILLVARTPGSAA----FFSKRFSGRSAKKI-----------YWALVVGVPDIRQG 192
Query: 291 IIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKH 350
+I APL+K + G+ M H P A T+YRV+ +W+EL+P+T R H
Sbjct: 193 VIEAPLAKQPGSGGEK---MHVDHEGGAP---AKTKYRVVESAGKKVAWLELQPMTGRTH 246
Query: 351 QLRVHCAEALGTPIVGDYKYG 371
QLRVHCA A+G PIVGD KYG
Sbjct: 247 QLRVHCA-AMGHPIVGDGKYG 266
>K9CV77_SPHYA (tr|K9CV77) Pseudouridine synthase OS=Sphingobium yanoikuyae ATCC
51230 GN=HMPREF9718_01521 PE=3 SV=1
Length = 450
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 107/202 (52%), Gaps = 23/202 (11%)
Query: 170 DEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRL 229
DEI Y+Q +VI++D IV+NKPP L +G +D +D + PKLVHRL
Sbjct: 175 DEIAYVQDMVIHRDKQAIVINKPPGLATQGGTKTDEHVDRLLDGLI-FDAESRPKLVHRL 233
Query: 230 DKESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKE 289
DK++SG LL R+ S +H FS+ + K YWA+VIG P+ +
Sbjct: 234 DKDTSGALLLARSSRSAAHFAKAFSSRTARKV---------------YWAIVIGVPSIDD 278
Query: 290 GIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRK 349
G+I P++K G+ H E A T YRV+ N +WVEL+P T R
Sbjct: 279 GMIELPITKQPGTGGEK------MHVDEEEGLPARTRYRVIERAGNRAAWVELQPYTGRT 332
Query: 350 HQLRVHCAEALGTPIVGDYKYG 371
HQLRVH A A+G P+VGD KYG
Sbjct: 333 HQLRVHMA-AIGHPLVGDGKYG 353
>M0ZA56_HORVD (tr|M0ZA56) Uncharacterized protein OS=Hordeum vulgare var.
distichum PE=4 SV=1
Length = 126
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 61/91 (67%), Positives = 75/91 (82%)
Query: 136 MKPGARLHVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKL 195
M+PG R+H+PVS+AE I KRY+ IP+ TL+PN DEI+YL+RLVIYKDSAI+VLNKPPK+
Sbjct: 1 MEPGMRIHLPVSVAEAEIKKRYETIPTATLHPNRDEIEYLKRLVIYKDSAILVLNKPPKV 60
Query: 196 PVKGNLPVHNSMDXXXXXXXSYDYDEGPKLV 226
P+KGNLPVHNSMD S+ +EGPKLV
Sbjct: 61 PMKGNLPVHNSMDVLAAAALSFGNEEGPKLV 91
>I5B9D0_9SPHN (tr|I5B9D0) Pseudouridine synthase OS=Sphingobium indicum B90A
GN=SIDU_17288 PE=3 SV=1
Length = 436
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 77/202 (38%), Positives = 112/202 (55%), Gaps = 23/202 (11%)
Query: 170 DEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRL 229
D++ + Q LVI++D+ IV+NKPP L +G + +D +D D+ PKLVHRL
Sbjct: 154 DQMAFAQGLVIHRDAQAIVINKPPGLATQGGTKTDDHVDGLLDAL-EFDLDQRPKLVHRL 212
Query: 230 DKESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKE 289
DK++SG LL RT S ++ FS+ + K YWA+V+G P+ ++
Sbjct: 213 DKDTSGALLIARTARSAAYFAKAFSSRTARKV---------------YWAIVMGVPSIED 257
Query: 290 GIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRK 349
G+I P++K G E++ + + R + YRV+ N +WVEL+P T R
Sbjct: 258 GMIELPIAKQPGTGG--EKMHVDEEEGLPSR----SRYRVIERAGNRAAWVELQPYTGRT 311
Query: 350 HQLRVHCAEALGTPIVGDYKYG 371
HQLRVH A A+G PIVGD KYG
Sbjct: 312 HQLRVHMA-AIGHPIVGDGKYG 332
>D4Z192_SPHJU (tr|D4Z192) Pseudouridine synthase OS=Sphingobium japonicum (strain
NBRC 101211 / UT26S) GN=rluC PE=3 SV=1
Length = 436
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 77/202 (38%), Positives = 112/202 (55%), Gaps = 23/202 (11%)
Query: 170 DEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRL 229
D++ + Q LVI++D+ IV+NKPP L +G + +D +D D+ PKLVHRL
Sbjct: 154 DQMAFAQGLVIHRDAQAIVINKPPGLATQGGTKTDDHVDGLLDAL-EFDLDQRPKLVHRL 212
Query: 230 DKESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKE 289
DK++SG LL RT S ++ FS+ + K YWA+V+G P+ ++
Sbjct: 213 DKDTSGALLIARTARSAAYFAKAFSSRTARKV---------------YWAIVMGVPSIED 257
Query: 290 GIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRK 349
G+I P++K G E++ + + R + YRV+ N +WVEL+P T R
Sbjct: 258 GMIELPIAKQPGTGG--EKMHVDEEEGLPSR----SRYRVIERAGNRAAWVELQPYTGRT 311
Query: 350 HQLRVHCAEALGTPIVGDYKYG 371
HQLRVH A A+G PIVGD KYG
Sbjct: 312 HQLRVHMA-AIGHPIVGDGKYG 332
>J2L5B4_9SPHN (tr|J2L5B4) Pseudouridine synthase (Precursor) OS=Sphingobium sp.
AP49 GN=PMI04_02446 PE=3 SV=1
Length = 447
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 79/202 (39%), Positives = 109/202 (53%), Gaps = 23/202 (11%)
Query: 170 DEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRL 229
DEI Y+Q +VI++D IV+NKPP L +G +D +D + PKLVHRL
Sbjct: 172 DEIAYVQDMVIHRDKQAIVINKPPGLATQGGTKTDEHVDRLLDGLI-FDAESRPKLVHRL 230
Query: 230 DKESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKE 289
DK++SG LL R+ S +H FS+ + K YWA+VIG P+ +
Sbjct: 231 DKDTSGALLIARSSRSAAHFAKAFSSRTARKV---------------YWAIVIGVPSIND 275
Query: 290 GIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRK 349
G+I P++K G E++ + + R T YRV+ N +WVEL+P T R
Sbjct: 276 GMIELPIAKQPGTGG--EKMHVDEAEGLPAR----TRYRVIERAGNRAAWVELQPYTGRT 329
Query: 350 HQLRVHCAEALGTPIVGDYKYG 371
HQLRVH A A+G P+VGD KYG
Sbjct: 330 HQLRVHMA-AIGHPLVGDGKYG 350
>A9HLV5_GLUDA (tr|A9HLV5) Pseudouridine synthase OS=Gluconacetobacter
diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5)
GN=rluA PE=3 SV=1
Length = 325
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 108/200 (54%), Gaps = 19/200 (9%)
Query: 172 IKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDK 231
++ ++ +VIY D +IVLNKP LPV+G + + +D D D P+LVHR+D+
Sbjct: 85 VREIRGMVIYSDDQVIVLNKPAGLPVQGGPGIIHHVDAMLDGLKDQDDDPRPRLVHRIDR 144
Query: 232 ESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGI 291
++SG+LL RT + L F + K+ YWA+V+G P+ G+
Sbjct: 145 DTSGLLLLARTPGVAAKLAASFRGRDVRKT---------------YWAIVVGRPSPASGV 189
Query: 292 IHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQ 351
I PL++ L G ++A + A++EY VL SW+ L PLT R HQ
Sbjct: 190 IDQPLAR--LGAGPGALTVVASRKDADA-AHALSEYEVLDAAGRKLSWLALSPLTGRTHQ 246
Query: 352 LRVHCAEALGTPIVGDYKYG 371
LRVHC EALGTPI+GD KYG
Sbjct: 247 LRVHC-EALGTPILGDPKYG 265
>G9ZW07_9PROT (tr|G9ZW07) Pseudouridine synthase OS=Acetobacteraceae bacterium
AT-5844 GN=HMPREF9946_00725 PE=3 SV=1
Length = 326
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 76/202 (37%), Positives = 112/202 (55%), Gaps = 20/202 (9%)
Query: 170 DEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRL 229
++ K L+R+++++D +II LNKP LPV+G + +D + ++E P+LVHRL
Sbjct: 84 EDAKALERMILFQDESIIALNKPHGLPVQGGPNIKKHLDGMLDAL-RFGHEERPRLVHRL 142
Query: 230 DKESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKE 289
D+++SG++L R + + S L F + ++ K+ YWA+V+G P +
Sbjct: 143 DRDTSGVILLARDQRAASFLAKAFRSRDAKKT---------------YWAIVVGQPQYEA 187
Query: 290 GIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRK 349
G I PL+K + ERV+ A AVTEY +W+EL PLT R
Sbjct: 188 GRIDMPLAKQG-GGPQGERVVPAEGKE---GAFAVTEYTTRDVARRHATWLELHPLTGRT 243
Query: 350 HQLRVHCAEALGTPIVGDYKYG 371
HQLRVHCA AL TPI+GD KYG
Sbjct: 244 HQLRVHCASALETPILGDGKYG 265
>K5YQS6_9PROT (tr|K5YQS6) Pseudouridine synthase OS=Acidocella sp. MX-AZ02
GN=MXAZACID_01784 PE=3 SV=1
Length = 327
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 79/211 (37%), Positives = 112/211 (53%), Gaps = 20/211 (9%)
Query: 168 NADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVH 227
+ + K L+R+VIY+D ++IVLNKP LPV+G + +D ++ E PKLVH
Sbjct: 81 DENRTKELERMVIYQDDSVIVLNKPAGLPVQGGSGIAVHVDGMLDALQG-EHPERPKLVH 139
Query: 228 RLDKESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNE 287
RLD+++SG+L+ R+ + L F + K+ YWAL++G P+
Sbjct: 140 RLDRDTSGVLVIARSAKVAAKLSAAFRGRDVEKT---------------YWALLVGLPDA 184
Query: 288 KEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTS 347
EG I PL ++ L G+T R A E Q+A+T+YR+L EL P T
Sbjct: 185 LEGRIDLPLKRIDL--GQTSRAEPASRKDKEA-QKAITDYRILDKAGRKFCLAELSPHTG 241
Query: 348 RKHQLRVHCAEALGTPIVGDYKYGWFVHNRW 378
R HQLR HC ALGTPI+GD YG H +
Sbjct: 242 RMHQLRAHCL-ALGTPILGDEVYGSAYHEHF 271
>F6EVJ0_SPHCR (tr|F6EVJ0) Pseudouridine synthase OS=Sphingobium chlorophenolicum
L-1 GN=Sphch_0294 PE=3 SV=1
Length = 432
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 76/202 (37%), Positives = 111/202 (54%), Gaps = 23/202 (11%)
Query: 170 DEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRL 229
D+I + Q +VI++D+ IV+NKPP L +G + +D Y+ D+ PKLVHRL
Sbjct: 150 DQIAFAQGIVIHRDAQAIVINKPPGLATQGGTKTDDHVDGLLDAL-EYELDQRPKLVHRL 208
Query: 230 DKESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKE 289
DK++SG LL RT S + FS+ + K YWA+V+G P+ ++
Sbjct: 209 DKDTSGALLIARTARSAAFFAKAFSSRTARKV---------------YWAIVMGVPSIED 253
Query: 290 GIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRK 349
G++ P++K G E++ + + R + YRV+ N +WVEL+P T R
Sbjct: 254 GMVELPIAKQPGTGG--EKMHVDEEEGLPSR----SRYRVIERAGNRAAWVELQPYTGRT 307
Query: 350 HQLRVHCAEALGTPIVGDYKYG 371
HQLRVH A A+G PIVGD KYG
Sbjct: 308 HQLRVHMA-AIGHPIVGDGKYG 328
>F0ZT35_DICPU (tr|F0ZT35) Putative uncharacterized protein OS=Dictyostelium
purpureum GN=DICPUDRAFT_81306 PE=3 SV=1
Length = 583
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 94/289 (32%), Positives = 143/289 (49%), Gaps = 39/289 (13%)
Query: 115 DSFTQKDERMKPMRKMRPNDVMKPGARLHVPVSMAETRISKRYDAIPSGTLYP--NADEI 172
+ F Q KM+ ND ++ G+ ++ P ++ + + I T Y + DEI
Sbjct: 235 EEFKQNSTSELKRHKMKFNDKVEVGSWIYFP---SQALLDQHMADINEPTKYTRLSDDEI 291
Query: 173 KYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKE 232
K ++ V+YKD ++VLNKP L V+G + +D ++ E PKLVHRLDK
Sbjct: 292 KEIKESVLYKDEHLLVLNKPQGLSVQGGSGLKKHLDMMLNHLR-FEKSENPKLVHRLDKA 350
Query: 233 SSGILLFGRTKDSVSHLQWLFSN--INSAKSSCKAWNDACE------------------- 271
+SGIL+ GR++ + + + F ++S K + +N E
Sbjct: 351 TSGILILGRSRLAATAMAEKFELKLVSSKKKEKEKFNKDNERENKKNSSKKKKDTKDEEI 410
Query: 272 ---------ATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQE 322
+ YWAL+ G P +EG I APL KV++ G E+V+ A + +
Sbjct: 411 DDDEDLENKGIKKTYWALIAGAPKPREGRIRAPLKKVMI--GGEEKVIPAL-KIGDGAKL 467
Query: 323 AVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKYG 371
A+TEY+V+ ++ S+V L P T R HQLRVHCA L PI+GD KYG
Sbjct: 468 AITEYKVIQSSLDNQSFVALWPETGRTHQLRVHCASVLNAPIIGDTKYG 516
>Q2RQY9_RHORT (tr|Q2RQY9) Pseudouridine synthase OS=Rhodospirillum rubrum (strain
ATCC 11170 / NCIB 8255) GN=Rru_A2659 PE=3 SV=1
Length = 330
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 76/201 (37%), Positives = 111/201 (55%), Gaps = 24/201 (11%)
Query: 171 EIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLD 230
EI+ L+R ++++D+ +IV+NK L V+G + +D D E P+LVHRLD
Sbjct: 88 EIRALRRAILHEDAHLIVINKEAGLAVQGGTGTPHHLDGMLESLA--DGGETPRLVHRLD 145
Query: 231 KESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEG 290
K++SG+L+ RT+ + L F + + K YWA+V+G P +G
Sbjct: 146 KDTSGVLVLARTQAAARALTSAFRSREALKV---------------YWAIVVGRPPMLQG 190
Query: 291 IIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKH 350
I L+KV G+ ER+ + E + AVT++RV+ C+WVEL P T R H
Sbjct: 191 TIKGALAKV--AGGRGERMEINE----EEGKRAVTDFRVVDQAAKACAWVELHPRTGRTH 244
Query: 351 QLRVHCAEALGTPIVGDYKYG 371
QLRVHC E +GTPI+GD KYG
Sbjct: 245 QLRVHCLE-MGTPILGDGKYG 264
>G2T6N7_RHORU (tr|G2T6N7) Pseudouridine synthase OS=Rhodospirillum rubrum F11
GN=F11_13660 PE=3 SV=1
Length = 330
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 76/201 (37%), Positives = 111/201 (55%), Gaps = 24/201 (11%)
Query: 171 EIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLD 230
EI+ L+R ++++D+ +IV+NK L V+G + +D D E P+LVHRLD
Sbjct: 88 EIRALRRAILHEDAHLIVINKEAGLAVQGGTGTPHHLDGMLESLA--DGGETPRLVHRLD 145
Query: 231 KESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEG 290
K++SG+L+ RT+ + L F + + K YWA+V+G P +G
Sbjct: 146 KDTSGVLVLARTQAAARALTSAFRSREALKV---------------YWAIVVGRPPMLQG 190
Query: 291 IIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKH 350
I L+KV G+ ER+ + E + AVT++RV+ C+WVEL P T R H
Sbjct: 191 TIKGALAKV--AGGRGERMEINE----EEGKRAVTDFRVVDQAAKACAWVELHPRTGRTH 244
Query: 351 QLRVHCAEALGTPIVGDYKYG 371
QLRVHC E +GTPI+GD KYG
Sbjct: 245 QLRVHCLE-MGTPILGDGKYG 264
>H8FNW9_RHOMO (tr|H8FNW9) Pseudouridine synthase OS=Phaeospirillum molischianum
DSM 120 GN=PHAMO_180026 PE=3 SV=1
Length = 331
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 79/207 (38%), Positives = 110/207 (53%), Gaps = 24/207 (11%)
Query: 167 PNADE--IKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPK 224
P DE + L+ V+Y D +IVLNKPP L V+G + ++ +D + P+
Sbjct: 80 PTVDERTARALRDAVLYIDDDVIVLNKPPGLAVQGGTGMADNHLDAMLDVLRFDAPDRPR 139
Query: 225 LVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGT 284
LVHRLDK++SG+LL GR+ + + L LF + ++ K YWALV G
Sbjct: 140 LVHRLDKDTSGVLLLGRSVGATAKLAALFKSRSAQKC---------------YWALVAGV 184
Query: 285 PNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRP 344
P ++G I APL K+ GK M E + AVT YR++ + +W+E+ P
Sbjct: 185 PKLRQGRIDAPLGKL---GGKGVEKMGVDE---EDGRHAVTYYRIVDSALKRAAWLEMEP 238
Query: 345 LTSRKHQLRVHCAEALGTPIVGDYKYG 371
T R HQLR HC LGTPI+GD KYG
Sbjct: 239 RTGRTHQLRAHCL-LLGTPILGDGKYG 264
>Q2ND80_ERYLH (tr|Q2ND80) Pseudouridine synthase OS=Erythrobacter litoralis
(strain HTCC2594) GN=ELI_01345 PE=3 SV=1
Length = 399
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 88/244 (36%), Positives = 119/244 (48%), Gaps = 28/244 (11%)
Query: 128 RKMRPNDVMKPGARLHVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAII 187
++ RP D + G L +P + + R L P ++++ Q +VI + + I
Sbjct: 54 KRARPEDRLAAGQVLRIPPGGEDPERNPRARK----PLSP--EQVRMAQDMVIKETKSAI 107
Query: 188 VLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVS 247
VLNKPP L +G +D + D P+LVHRLDK++SG+LL RT S +
Sbjct: 108 VLNKPPGLATQGGTKTTKHVDGLLDAFVDGEDDPRPRLVHRLDKDTSGVLLIARTPGSAA 167
Query: 248 HLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTE 307
F+ ++ K YWALV+G P+ EG I APL+K G+
Sbjct: 168 AYSKRFAGRSAKKV---------------YWALVVGVPDLHEGEIDAPLAKQPGTGGEK- 211
Query: 308 RVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGD 367
H E Q A T YRV+ N WVEL P+T R HQLRVH A A+G PIVGD
Sbjct: 212 -----MHVDEENGQPAKTRYRVVERAGNRACWVELEPMTGRTHQLRVHMA-AMGHPIVGD 265
Query: 368 YKYG 371
KYG
Sbjct: 266 GKYG 269
>I6YQY2_ZYMMB (tr|I6YQY2) Pseudouridine synthase OS=Zymomonas mobilis subsp.
mobilis ATCC 29191 GN=ZZ6_0819 PE=3 SV=1
Length = 374
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 87/244 (35%), Positives = 123/244 (50%), Gaps = 26/244 (10%)
Query: 128 RKMRPNDVMKPGARLHVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAII 187
R+ P + G + VP AE + A PS A EI++ Q LVI++D A I
Sbjct: 49 RRATPGSRVMAGQSIRVPP--AEPNLQDDRPAKPSRPELTEA-EIEFAQSLVIHRDKAAI 105
Query: 188 VLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVS 247
V+NKP L +G H +D ++ PKLVHRLDK++SG+LL R+ ++
Sbjct: 106 VVNKPAGLATQGGTKTHYHLDGLLDAL-QFEAPSRPKLVHRLDKDTSGVLLLARSANNAG 164
Query: 248 HLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTE 307
+ FS ++ YWALV+G P+ EG+I PL++ + G+
Sbjct: 165 YFSKAFSG---------------RTAHKVYWALVVGVPSITEGLIDLPLARQPGSGGEKM 209
Query: 308 RVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGD 367
V + +T A T YRV+ N W+EL+PLT R HQLR H + A+G PIVGD
Sbjct: 210 HVDEENGAT------AKTLYRVIERAGNAACWLELQPLTGRTHQLRAHLS-AIGFPIVGD 262
Query: 368 YKYG 371
KYG
Sbjct: 263 GKYG 266
>M0W6Q5_HORVD (tr|M0W6Q5) Uncharacterized protein OS=Hordeum vulgare var.
distichum PE=4 SV=1
Length = 373
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 78/233 (33%), Positives = 124/233 (53%), Gaps = 19/233 (8%)
Query: 73 GQQRDHV------TAVNWIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKP 126
GQ D + TA+ W++ S+++ FR V+ + A S T
Sbjct: 79 GQGGDEIEGSSNSTAIRWVRRCCPDLPASLVQKLFRLRKVKKNAVTAETSSTHASAEQFR 138
Query: 127 MRKMRPNDVMKPGARLHVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAI 186
+R++ D + PG L +PV++ E+ ++++ + N +EI +L+ L IYKD AI
Sbjct: 139 LRRVSAKDHLLPGDTLFLPVNIQESSVAEK------ARKFDNRNEIDFLRSLEIYKDKAI 192
Query: 187 IVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSV 246
IV+NKPP +PV+G + + NS+D D P+LVHRLD++ SG+L+ GRT+ S
Sbjct: 193 IVVNKPPGMPVQGGVGIKNSIDVLAPMFEENSSD-APRLVHRLDRDCSGVLVLGRTQLSA 251
Query: 247 SHLQWLFSNINSAKSSCKAWNDACEATYQR-YWALVIGTPNEKEGIIHAPLSK 298
S L +F + + A D + QR Y ALV+GTP +G++ APL+K
Sbjct: 252 SILHAIFR-----EKTADALADGTQQVLQRKYVALVMGTPRHPKGLLSAPLAK 299
>F3X0E4_9SPHN (tr|F3X0E4) Pseudouridine synthase OS=Sphingomonas sp. S17
GN=SUS17_2903 PE=3 SV=1
Length = 363
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 78/202 (38%), Positives = 103/202 (50%), Gaps = 23/202 (11%)
Query: 170 DEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRL 229
DE + + +VI+KD +VLNKPP L +G +D ++ + PKLVHRL
Sbjct: 88 DEAAFAREMVIHKDRDALVLNKPPGLATQGGTKTTTHVDGLLDAL-QFEAEGRPKLVHRL 146
Query: 230 DKESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKE 289
DK++SG LL R S + FS + K YWALV+G P+ ++
Sbjct: 147 DKDTSGALLVARNARSAAFFAKAFSGRTAKKI---------------YWALVVGVPSIED 191
Query: 290 GIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRK 349
G I P++K G+ H E Q A + YRV+ N C WVEL+P T R
Sbjct: 192 GTIELPIAKQPGTGGEK------MHVDEENGQAARSRYRVIERAGNRCCWVELQPFTGRT 245
Query: 350 HQLRVHCAEALGTPIVGDYKYG 371
HQLRVH A A+G PIVGD KYG
Sbjct: 246 HQLRVHMA-AIGHPIVGDGKYG 266
>Q5NQE2_ZYMMO (tr|Q5NQE2) Pseudouridine synthase OS=Zymomonas mobilis subsp.
mobilis (strain ATCC 31821 / ZM4 / CP4) GN=ZMO0439 PE=3
SV=1
Length = 374
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 76/201 (37%), Positives = 108/201 (53%), Gaps = 23/201 (11%)
Query: 171 EIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLD 230
EI++ Q LVI++D A IV+NKP L +G H +D ++ PKLVHRLD
Sbjct: 89 EIEFAQSLVIHRDKAAIVVNKPAGLATQGGTKTHYHLDGLLDAL-QFEAPSRPKLVHRLD 147
Query: 231 KESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEG 290
K++SG+LL R+ ++ + FS ++ YWALV+G P+ EG
Sbjct: 148 KDTSGVLLLARSANNAGYFSKAFSG---------------RTAHKVYWALVVGVPSITEG 192
Query: 291 IIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKH 350
+I PL++ + G+ V + +T A T YRV+ N W+EL+PLT R H
Sbjct: 193 LIDLPLARQPGSGGEKMHVDEENGAT------AKTLYRVIERAGNAACWLELQPLTGRTH 246
Query: 351 QLRVHCAEALGTPIVGDYKYG 371
QLR H + A+G PIVGD KYG
Sbjct: 247 QLRAHLS-AIGFPIVGDGKYG 266
>F8DT78_ZYMMA (tr|F8DT78) Pseudouridine synthase OS=Zymomonas mobilis subsp.
mobilis (strain ATCC 10988 / DSM 424 / LMG 404 / NCIMB
8938 / NRRL B-806 / ZM1) GN=Zmob_0973 PE=3 SV=1
Length = 374
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 76/201 (37%), Positives = 108/201 (53%), Gaps = 23/201 (11%)
Query: 171 EIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLD 230
EI++ Q LVI++D A IV+NKP L +G H +D ++ PKLVHRLD
Sbjct: 89 EIEFAQSLVIHRDKAAIVVNKPAGLATQGGTKTHYHLDGLLDAL-QFEAPSRPKLVHRLD 147
Query: 231 KESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEG 290
K++SG+LL R+ ++ + FS ++ YWALV+G P+ EG
Sbjct: 148 KDTSGVLLLARSANNAGYFSKAFSG---------------RTAHKVYWALVVGVPSITEG 192
Query: 291 IIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKH 350
+I PL++ + G+ V + +T A T YRV+ N W+EL+PLT R H
Sbjct: 193 LIDLPLARQPGSGGEKMHVDEENGAT------AKTLYRVIERAGNAACWLELQPLTGRTH 246
Query: 351 QLRVHCAEALGTPIVGDYKYG 371
QLR H + A+G PIVGD KYG
Sbjct: 247 QLRAHLS-AIGFPIVGDGKYG 266
>C8WCB9_ZYMMN (tr|C8WCB9) Pseudouridine synthase OS=Zymomonas mobilis subsp.
mobilis (strain NCIB 11163) GN=Za10_0808 PE=3 SV=1
Length = 374
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 76/201 (37%), Positives = 108/201 (53%), Gaps = 23/201 (11%)
Query: 171 EIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLD 230
EI++ Q LVI++D A IV+NKP L +G H +D ++ PKLVHRLD
Sbjct: 89 EIEFAQSLVIHRDKAAIVVNKPAGLATQGGTKTHYHLDGLLDAL-QFEAPSRPKLVHRLD 147
Query: 231 KESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEG 290
K++SG+LL R+ ++ + FS ++ YWALV+G P+ EG
Sbjct: 148 KDTSGVLLLARSANNAGYFSKAFSG---------------RTAHKVYWALVVGVPSITEG 192
Query: 291 IIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKH 350
+I PL++ + G+ V + +T A T YRV+ N W+EL+PLT R H
Sbjct: 193 LIDLPLARQPGSGGEKMHVDEENGAT------AKTLYRVIERAGNAACWLELQPLTGRTH 246
Query: 351 QLRVHCAEALGTPIVGDYKYG 371
QLR H + A+G PIVGD KYG
Sbjct: 247 QLRAHLS-AIGFPIVGDGKYG 266
>Q1GRB1_SPHAL (tr|Q1GRB1) Pseudouridine synthase OS=Sphingopyxis alaskensis
(strain DSM 13593 / LMG 18877 / RB2256) GN=Sala_2102
PE=3 SV=1
Length = 405
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 97/300 (32%), Positives = 143/300 (47%), Gaps = 48/300 (16%)
Query: 73 GQQRDHVTAVNWIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKPMRKMRP 132
G++ D + W K + GT +++ R G + ++ RK
Sbjct: 14 GEEDDGIRLDRWFKRHRPGTPHALLARWARSGQLTLDG-----------------RKADV 56
Query: 133 NDVMKPGARLHVPVSMAETRISKRYDAIPSGTLYPNAD-EIKYLQRLVIYKDSAIIVLNK 191
+D + G RL +PV E +A P+ P + ++ + ++I++D++ IVLNK
Sbjct: 57 SDRIAVGQRLVMPVPPVEA------EARPARKDRPLTEADVALAESMLIHRDASAIVLNK 110
Query: 192 PPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQW 251
P L +G + +D YD PKLVHRLDK++SG LL RT + +
Sbjct: 111 LPGLATQGGTKTEHHVDGLLDAL-KYDAPVRPKLVHRLDKDTSGALLIARTPRAAAWFAK 169
Query: 252 LFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVML 311
FSN ++ K+ YWA+V+G P+ +G I PL+K G M
Sbjct: 170 SFSNRSAKKT---------------YWAIVVGVPDIAQGEIDLPLAK---QPGSGGEKMH 211
Query: 312 AHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKYG 371
H S + + T YRV+ N +WVEL+PLT R HQLRVH A A+G PIVGD KYG
Sbjct: 212 VHDSGLASK----TRYRVIDRAGNSAAWVELQPLTGRTHQLRVHMA-AIGHPIVGDGKYG 266
>H6SNP0_RHOPH (tr|H6SNP0) Pseudouridine synthase OS=Rhodospirillum photometricum
DSM 122 GN=RSPPHO_02745 PE=3 SV=1
Length = 372
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 73/201 (36%), Positives = 109/201 (54%), Gaps = 24/201 (11%)
Query: 171 EIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLD 230
EI+ LQ +++ D +IVLNK P L V+G + +D E P+LVHRLD
Sbjct: 109 EIRALQAAILHSDDHLIVLNKAPGLAVQGGTGTDHHLDAMLDALAGGG--ERPRLVHRLD 166
Query: 231 KESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEG 290
K++SG+L+ RT+ + L F T + YWALV+G P ++G
Sbjct: 167 KDTSGVLVLARTQAAARFLTAAFR---------------ARDTLKVYWALVVGRPPLEQG 211
Query: 291 IIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKH 350
+ L+K G+ ER+++ E + A+T++RV+ + C+W++LRP T R H
Sbjct: 212 TMRGALAKE--ARGRGERMVVNE----EDGRPAITDFRVIDQAVGACAWLDLRPRTGRTH 265
Query: 351 QLRVHCAEALGTPIVGDYKYG 371
QLRVHC E +G PI+GD KYG
Sbjct: 266 QLRVHCLE-MGIPILGDGKYG 285
>M4S031_9SPHN (tr|M4S031) Ribosomal large subunit pseudouridine synthase C
OS=Sphingomonas sp. MM-1 GN=G432_07030 PE=4 SV=1
Length = 369
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 76/202 (37%), Positives = 107/202 (52%), Gaps = 23/202 (11%)
Query: 170 DEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRL 229
++ ++ Q LVI++D A IVLNKPP L +G +D ++ + PKLVHRL
Sbjct: 94 EDTEFAQSLVIHRDKAAIVLNKPPGLATQGGTKTDRHVDGLLDAV-QFEAEGRPKLVHRL 152
Query: 230 DKESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKE 289
DK++SG+LL R+ ++ H FS+ + K YWAL+ G P+ +
Sbjct: 153 DKDTSGVLLVARSANAAGHFAKAFSSRTARKV---------------YWALIAGVPSIDD 197
Query: 290 GIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRK 349
G+I P++K G+ H + A T YRV+ N +WVEL+P T R
Sbjct: 198 GMIELPIAKQPGTGGEK------MHVDEKEGSPARTRYRVIERAGNRAAWVELQPYTGRT 251
Query: 350 HQLRVHCAEALGTPIVGDYKYG 371
HQLRVH A A+G PIVGD KYG
Sbjct: 252 HQLRVHMA-AIGHPIVGDGKYG 272
>M2S9R0_9PROT (tr|M2S9R0) Pseudouridine synthase OS=alpha proteobacterium JLT2015
GN=C725_2406 PE=3 SV=1
Length = 395
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 92/243 (37%), Positives = 125/243 (51%), Gaps = 26/243 (10%)
Query: 129 KMRPNDVMKPGARLHVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIV 188
+ +P D ++ G L VP AE R+S + L D+I++ + LVI+KD+ IV
Sbjct: 52 RAKPGDRIRAGQVLRVPPLEAE-RVSPMAEKRERRPL--TEDQIEFARSLVIHKDAHAIV 108
Query: 189 LNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSH 248
+NKPP L +G +D +D DE PKLVHRLDK++SG+LL RT + +H
Sbjct: 109 INKPPGLATQGGTGQKAHVDGLLDAL-KFDRDERPKLVHRLDKDTSGVLLLARTARAAAH 167
Query: 249 LQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTER 308
FS + K YWA+V+G P +G I PL+K G+
Sbjct: 168 FSKAFSGRTARKI---------------YWAIVMGVPEIPDGRIDLPLAKQPGTGGEK-- 210
Query: 309 VMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDY 368
H E Q A + YR + N +W+EL+PLT R HQLRVH EA+G PIVGD
Sbjct: 211 ----MHVDQEGGQRAASRYRRIDRAANRAAWLELQPLTGRTHQLRVHM-EAIGHPIVGDG 265
Query: 369 KYG 371
KYG
Sbjct: 266 KYG 268
>Q54N28_DICDI (tr|Q54N28) Putative uncharacterized protein OS=Dictyostelium
discoideum GN=DDB_0186558 PE=3 SV=1
Length = 718
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 93/283 (32%), Positives = 142/283 (50%), Gaps = 49/283 (17%)
Query: 129 KMRPNDVMKPGARLHVPVS-MAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAII 187
K++ ND ++ G+ ++ P + + +I+ D P + EIK ++ V+YKD II
Sbjct: 381 KLKFNDKVQVGSWIYFPAQVILDQQIADIKD--PQKYARLSDQEIKEIRESVLYKDEHII 438
Query: 188 VLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVS 247
VLNKP L V+G ++ +D ++ DE PKLVHRLD+ +SGIL+ GR+K + S
Sbjct: 439 VLNKPQGLSVQGGTGLNKHLDMMLSHL-RFEKDENPKLVHRLDRNTSGILILGRSKLAAS 497
Query: 248 HL---------------------------------------QWLFSNINSAKSSCKAWND 268
+ + +F+N + + ++
Sbjct: 498 AMTKKFELKLVKENKKDKDDNNNNKNNKNNNKNDSKRLFREKEVFNNNKNKDEENENYSK 557
Query: 269 ACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYR 328
+ TY WAL+ TP KEG I APL KV++ G E+V + +T + + A+TEY+
Sbjct: 558 GIKKTY---WALLGSTPTPKEGRIRAPLKKVVV--GGFEKV-VPTLTTGDGAKIAITEYK 611
Query: 329 VLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKYG 371
VL + ++ L P T R HQLRVHCA L TPI+GD KYG
Sbjct: 612 VLESSLTKHCFISLWPETGRTHQLRVHCASVLNTPIIGDPKYG 654
>B6AVG3_9RHOB (tr|B6AVG3) Pseudouridine synthase OS=Rhodobacteraceae bacterium
HTCC2083 GN=RB2083_211 PE=3 SV=1
Length = 347
Score = 127 bits (318), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 78/209 (37%), Positives = 112/209 (53%), Gaps = 22/209 (10%)
Query: 168 NADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVH 227
+A + K+++ VIYKD +I LNKP LPV+G +D YD++E PKLVH
Sbjct: 82 SAADTKFIRSCVIYKDDHVIALNKPAGLPVQGGTGHARHVDGLLDALM-YDFEERPKLVH 140
Query: 228 RLDKESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNE 287
RLDK++SG+L+ GRT+ + + L F + N+ K YWA + G PN
Sbjct: 141 RLDKDTSGVLILGRTRRATADLTASFRHRNTRKI---------------YWAAIAGVPNP 185
Query: 288 KEGIIHAPLSKVLLND--GKTERVMLAHHSTI---EPRQEAVTEYRVLGPKINGCSWVEL 342
+ G I L K + G+ E+++ H + E + A+T+Y VL SW L
Sbjct: 186 RMGTIKYGLMKAPGHGARGEGEKMICIHPREVDQTEGAKRALTDYAVLETAGQRTSWCAL 245
Query: 343 RPLTSRKHQLRVHCAEALGTPIVGDYKYG 371
P+T R HQLR H +E +G P+VGD KYG
Sbjct: 246 IPITGRTHQLRAHMSE-MGHPVVGDGKYG 273
>I9WEI4_9SPHN (tr|I9WEI4) Pseudouridine synthase OS=Novosphingobium sp. Rr 2-17
GN=WSK_2661 PE=3 SV=1
Length = 442
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 78/202 (38%), Positives = 103/202 (50%), Gaps = 24/202 (11%)
Query: 170 DEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRL 229
+E++ +V+ +D A IVLNKPP L +G H +D + P+LVHRL
Sbjct: 90 EELELADSMVLTQDRAAIVLNKPPGLATQGGTGTHAHVDGLLDAYAASGPR--PRLVHRL 147
Query: 230 DKESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKE 289
DK++SG+LL R+ S + FS + K YWALV+G P +
Sbjct: 148 DKDTSGVLLIARSAGSAAFFSKRFSGRTARKI---------------YWALVVGVPGIHD 192
Query: 290 GIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRK 349
G+I P++K G+ H E Q A T YRV+ N +WVEL PLT R
Sbjct: 193 GMIELPIAKQPGTGGEK------MHVDKEAGQVARTRYRVIDRAGNSAAWVELHPLTGRT 246
Query: 350 HQLRVHCAEALGTPIVGDYKYG 371
HQLRVH A A+G PIVGD KYG
Sbjct: 247 HQLRVHMA-AIGHPIVGDGKYG 267
>F8ES98_ZYMMT (tr|F8ES98) Pseudouridine synthase OS=Zymomonas mobilis subsp.
pomaceae (strain ATCC 29192 / JCM 10191 / NBRC 13757 /
NCIMB 11200 / NRRL B-4491) GN=Zymop_0772 PE=3 SV=1
Length = 370
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/204 (36%), Positives = 109/204 (53%), Gaps = 23/204 (11%)
Query: 168 NADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVH 227
A E ++ Q LVI++D I++NKPP L +G H +D +D PKLVH
Sbjct: 86 TAAENEFAQSLVIHRDRDAIIVNKPPGLATQGGTKTHYHLDGLLDAL-QFDAVSRPKLVH 144
Query: 228 RLDKESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNE 287
RLDK++SG+LL R+ ++ + FS ++ YWALV+G P+
Sbjct: 145 RLDKDTSGVLLLARSANAAGYFSKSFSG---------------RTAHKVYWALVVGVPSI 189
Query: 288 KEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTS 347
+EG+I PL++ + G+ V + +T A T YR++ N W+EL+PLT
Sbjct: 190 EEGLIDLPLARQPGSGGEKMHVDEENGAT------AKTLYRIVERAGNAACWLELQPLTG 243
Query: 348 RKHQLRVHCAEALGTPIVGDYKYG 371
R HQLR H + A+G PIVGD KYG
Sbjct: 244 RTHQLRAHLS-AIGFPIVGDGKYG 266
>F3SAS2_9PROT (tr|F3SAS2) Pseudouridine synthase OS=Gluconacetobacter sp. SXCC-1
GN=SXCC_03152 PE=3 SV=1
Length = 322
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 74/207 (35%), Positives = 110/207 (53%), Gaps = 19/207 (9%)
Query: 168 NADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVH 227
+A +++ + ++VIY+D +IVLNKP + V+G + + +D D P+LVH
Sbjct: 78 DARQVREINQMVIYRDDHVIVLNKPAGIAVQGGPGITHHIDALLDGLRDSPDDPRPRLVH 137
Query: 228 RLDKESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNE 287
R+D+++SG+LL RT + L F + ++ YWA+V+G P+
Sbjct: 138 RIDRDTSGLLLVARTPGVAAKLAAAFRGRD---------------VHKVYWAVVVGRPSP 182
Query: 288 KEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTS 347
GII PL++ L G ++A + A++EY VL SW+ L PLT
Sbjct: 183 ATGIIDQPLTR--LGAGAGAISVVAERGDADA-VHALSEYEVLDAAARKMSWLALSPLTG 239
Query: 348 RKHQLRVHCAEALGTPIVGDYKYGWFV 374
R HQLRVHC EALG PI+GD KYG V
Sbjct: 240 RTHQLRVHC-EALGNPILGDPKYGGDV 265
>B7RL95_9RHOB (tr|B7RL95) Pseudouridine synthase OS=Roseobacter sp. GAI101
GN=rluC PE=3 SV=1
Length = 349
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/216 (37%), Positives = 107/216 (49%), Gaps = 22/216 (10%)
Query: 161 PSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYD 220
P T +AD K+++ VIY+D II LNKPP LPV+G + +D D
Sbjct: 76 PKRTRISDADA-KFIRSCVIYRDDYIIALNKPPGLPVQGGSGQSDRHVDALADALMFDLD 134
Query: 221 EGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWAL 280
E P+LVHRLDK++SG+L+ RT+ + L F + T + YWA
Sbjct: 135 EKPRLVHRLDKDTSGVLIMARTRSIAADLTSSFRH---------------RQTRKIYWAA 179
Query: 281 VIGTPNEKEGIIHAPLSKVLLND--GKTERVMLAH---HSTIEPRQEAVTEYRVLGPKIN 335
V G P+ K G I L K + G+ E++ H T E + A T+Y L
Sbjct: 180 VAGVPHPKNGTIKFGLVKAFGHGARGEGEKMYCVHPKDMDTTEGAKRATTDYATLAQAGT 239
Query: 336 GCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKYG 371
WV L P+T R HQLR H AE +G PIVGD KYG
Sbjct: 240 RTCWVALIPVTGRTHQLRAHMAE-IGHPIVGDGKYG 274
>G7LDD6_MEDTR (tr|G7LDD6) Pentatricopeptide repeat-containing protein OS=Medicago
truncatula GN=MTR_8g107230 PE=4 SV=1
Length = 687
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/94 (63%), Positives = 73/94 (77%), Gaps = 5/94 (5%)
Query: 19 RHYSRIQPPRPVCVEPVIRVSNNIARLD--VPKEGPKPRQILSLPPFPGHPLPG---ASG 73
+HYSR++PP+PV V+ VIRVSNNIARLD VPK+GPKPRQ+LSLP FP HPL G S
Sbjct: 50 KHYSRVRPPKPVSVDKVIRVSNNIARLDLDVPKDGPKPRQLLSLPSFPSHPLSGKNSTSA 109
Query: 74 QQRDHVTAVNWIKYYFKGTWGSVIESHFRKGLVQ 107
++ D VT VN IKYYFK + SV ESHF++GL+
Sbjct: 110 REHDRVTVVNCIKYYFKDAFDSVNESHFKEGLLH 143
>D5RQH5_9PROT (tr|D5RQH5) Pseudouridine synthase OS=Roseomonas cervicalis ATCC
49957 GN=rluC PE=3 SV=1
Length = 331
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/204 (35%), Positives = 109/204 (53%), Gaps = 20/204 (9%)
Query: 168 NADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVH 227
+A++ K L+ +++Y+D II LNKP LPV+G + +D +++ +E P+LVH
Sbjct: 87 SAEDAKALEAMILYRDDYIIALNKPHGLPVQGGPNIKKHLDGMLDAL-TFEKEERPRLVH 145
Query: 228 RLDKESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNE 287
RLD+++SG++L R + L F ++ K+ YWA+V+G P
Sbjct: 146 RLDRDTSGVILLARDASAAGFLAKAFRGRDAEKT---------------YWAIVVGQPQY 190
Query: 288 KEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTS 347
+ G I L+K ERV+ A A+TE+ + +W+ELRPLT
Sbjct: 191 QGGRIDMRLAKQG-GGPMGERVVPAEGRD---GAHAITEFDTVDVARRHATWLELRPLTG 246
Query: 348 RKHQLRVHCAEALGTPIVGDYKYG 371
R HQLRVHCA AL PI+GD KYG
Sbjct: 247 RTHQLRVHCAAALSCPILGDGKYG 270
>D5QCH7_GLUHA (tr|D5QCH7) Pseudouridine synthase OS=Gluconacetobacter hansenii
ATCC 23769 GN=GXY_04150 PE=3 SV=1
Length = 325
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 71/201 (35%), Positives = 106/201 (52%), Gaps = 19/201 (9%)
Query: 171 EIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLD 230
+++ ++++VIY D +IVLNKP + V+G + + +D D P+LVHR+D
Sbjct: 84 QVREIRKMVIYSDDQVIVLNKPAGIAVQGGPGITHHIDGLLDGLREQPDDPRPRLVHRID 143
Query: 231 KESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEG 290
+++SG+LL RT + L F + + K YWA+ +G P G
Sbjct: 144 RDTSGLLLLARTPGVAAKLAASFRSRDVRKV---------------YWAVTVGRPTPASG 188
Query: 291 IIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKH 350
I+ PL+++ G +M+ + A++EY VL SW+ L PLT R H
Sbjct: 189 IVDQPLTRLGAGAGA---IMVVAGRRDKDAVHALSEYEVLDAAGRKLSWLALSPLTGRTH 245
Query: 351 QLRVHCAEALGTPIVGDYKYG 371
QLRVHC EALGTPI+GD KYG
Sbjct: 246 QLRVHC-EALGTPILGDPKYG 265
>G2I1W0_GLUXN (tr|G2I1W0) Pseudouridine synthase OS=Gluconacetobacter xylinus
(strain NBRC 3288 / BCRC 11682 / LMG 1693) GN=rluC PE=3
SV=1
Length = 325
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 73/201 (36%), Positives = 107/201 (53%), Gaps = 19/201 (9%)
Query: 171 EIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLD 230
+++ + ++VIY+D +IVLNKP + V+G + + +D D P+LVHR+D
Sbjct: 84 QVREINKMVIYRDDHVIVLNKPAGIAVQGGPGITHHIDALLDGLRENPDDPRPRLVHRID 143
Query: 231 KESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEG 290
+++SG+LL RT + L F + ++ YWA+V+G P+ G
Sbjct: 144 RDTSGLLLVARTPGVAAKLAAAFRGRD---------------VHKVYWAVVVGRPSPATG 188
Query: 291 IIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKH 350
II PL+K L G ++A + A++EY VL SW+ L PLT R H
Sbjct: 189 IIDQPLTK--LGAGAGAISVVAERGDPDA-VHALSEYEVLDAAARKMSWLALSPLTGRTH 245
Query: 351 QLRVHCAEALGTPIVGDYKYG 371
QLRVHC EALG PI+GD KYG
Sbjct: 246 QLRVHC-EALGNPILGDPKYG 265
>G8ALK2_AZOBR (tr|G8ALK2) Pseudouridine synthase OS=Azospirillum brasilense Sp245
GN=AZOBR_110088 PE=3 SV=1
Length = 229
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 73/197 (37%), Positives = 108/197 (54%), Gaps = 23/197 (11%)
Query: 175 LQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESS 234
+Q V+Y+D +++++KP LPV P + + + P L HRLD+++S
Sbjct: 6 IQARVLYRDGLMLIIDKPAGLPVHAG-PGGGPNLERHFDALRFGFPKPPGLAHRLDRDTS 64
Query: 235 GILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGIIHA 294
G L+ GR ++ L LF + K+ YWA+V GTP E++G I
Sbjct: 65 GCLILGRHPKALRKLGKLFQDGKVDKT---------------YWAVVAGTPPEEQGRIEL 109
Query: 295 PLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQLRV 354
PL KV N R+++A Q A+T+YRVLG + NG +W+EL+P T R HQ+RV
Sbjct: 110 PLKKVT-NKSGGWRIVVADDG-----QSAITDYRVLG-RGNGTTWLELKPHTGRTHQIRV 162
Query: 355 HCAEALGTPIVGDYKYG 371
HCA ALG P++GD +YG
Sbjct: 163 HCATALGCPLLGDPQYG 179
>A9DCN2_9RHIZ (tr|A9DCN2) Pseudouridine synthase OS=Hoeflea phototrophica DFL-43
GN=HPDFL43_06807 PE=3 SV=1
Length = 329
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 90/302 (29%), Positives = 147/302 (48%), Gaps = 49/302 (16%)
Query: 84 WIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKPMRKMR--PNDVMKPGAR 141
W K +F G ++ R G ++++ + D R++P + +R P V + G+
Sbjct: 21 WFKTHFPGLGFGQLQKLLRSGQIRVDG-----GRVKSDARLQPGQTVRIPPMGVDEKGS- 74
Query: 142 LHVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNL 201
P++ R N D+ L ++++++DS ++V NKP L V+G
Sbjct: 75 --APLTAKTIR---------------NRDDGDVLSQMLLHEDSKVLVFNKPAGLAVQGGS 117
Query: 202 PVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKS 261
V ++D + E P+LVHRLD++++G+L+ RT+ + L F + K+
Sbjct: 118 GVTRNVDDMLEAWRNKK-GEKPRLVHRLDRDTAGVLVVARTRGAAQALTAAFRERTTKKT 176
Query: 262 SCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQ 321
YWALV G P ++EG I L K +DG +R+ +A H EP
Sbjct: 177 ---------------YWALVTGVPRDREGKISTWLVKEATDDG--DRMRVAKHG--EPGA 217
Query: 322 E-AVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVHNRWKQ 380
+ AV+ YR++ W+EL P T R HQLRVHC LG PI+GD KY + H++ ++
Sbjct: 218 DHAVSYYRIIEKAAQNLCWLELEPYTGRTHQLRVHCLH-LGHPILGDPKY--YDHDKNRE 274
Query: 381 MP 382
P
Sbjct: 275 FP 276
>A6U892_SINMW (tr|A6U892) Pseudouridine synthase OS=Sinorhizobium medicae (strain
WSM419) GN=Smed_1019 PE=3 SV=1
Length = 330
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 90/288 (31%), Positives = 141/288 (48%), Gaps = 41/288 (14%)
Query: 84 WIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKPMRKMR-PNDVMKPGARL 142
W K +F G ++ R G ++++ A + D R++P + +R P + P +
Sbjct: 21 WFKVHFPGLGFGPLQKLLRSGQIRVDGARA-----KSDTRIQPGQTIRIPPLGVDPKEKK 75
Query: 143 HVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLP 202
P+ + R S P G L L R+V+++D+ +IVLNKPP L V+G
Sbjct: 76 TGPIGGRDLRQS------PDGEL---------LSRMVLHEDAKVIVLNKPPGLAVQGGSG 120
Query: 203 VHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKSS 262
V+ +D S E P+LVHRLD+++SG+L+ RT+ + L F ++ K+
Sbjct: 121 VNRHIDKMLEAWTSQK-GEKPRLVHRLDRDTSGVLVIARTRGAAQQLTAAFRERDTKKT- 178
Query: 263 CKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQE 322
YWALV G P ++E I + K DG +RV +A H +
Sbjct: 179 --------------YWALVRGVPRKREDKISTWVVKEQTPDG--DRVRIAKHGE-DGADH 221
Query: 323 AVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKY 370
A++ YR++ +W+E+ P T R HQLRVH A +G PI+GD KY
Sbjct: 222 AISFYRIVEQAGQNLAWLEMEPYTGRTHQLRVHAAH-IGHPIIGDPKY 268
>A5V9V0_SPHWW (tr|A5V9V0) Pseudouridine synthase OS=Sphingomonas wittichii
(strain RW1 / DSM 6014 / JCM 10273) GN=Swit_2710 PE=3
SV=1
Length = 368
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 77/202 (38%), Positives = 104/202 (51%), Gaps = 23/202 (11%)
Query: 170 DEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRL 229
+EI + + LVI++D IV+NKPP L +G +D +D + PKLVHRL
Sbjct: 94 EEIAFARSLVIHQDRQAIVINKPPGLATQGGTKTDIHVDRLLDAL-QFDAESRPKLVHRL 152
Query: 230 DKESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKE 289
DK++SG+LL RT + +H FS+ + K YWA+ G P+ +
Sbjct: 153 DKDTSGVLLLARTSRAAAHFAKAFSSRTARKV---------------YWAIATGVPSIDD 197
Query: 290 GIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRK 349
G+I P++K G+ V S A T YRV+ N WVEL+P T R
Sbjct: 198 GMIELPIAKQPGTGGEKMHVDEKEGSP------ARTRYRVIERAGNRACWVELQPHTGRT 251
Query: 350 HQLRVHCAEALGTPIVGDYKYG 371
HQLRVH A A+G PIVGD KYG
Sbjct: 252 HQLRVHLA-AIGHPIVGDGKYG 272
>J8VB27_9SPHN (tr|J8VB27) Pseudouridine synthase OS=Sphingomonas sp. LH128
GN=LH128_25975 PE=3 SV=1
Length = 426
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 79/201 (39%), Positives = 103/201 (51%), Gaps = 24/201 (11%)
Query: 171 EIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLD 230
EI+ +V+ +D A IVLNKPP L +G + +D + P+LVHRLD
Sbjct: 90 EIELADSMVLTQDRAAIVLNKPPGLATQGGSGMKEHVDGLLDAY--VEKGPRPRLVHRLD 147
Query: 231 KESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEG 290
K++SG+LL RT S + FS + K YWALV+G P+ +G
Sbjct: 148 KDTSGVLLIARTPGSAAFFSKRFSGRTAKKI---------------YWALVVGVPSINDG 192
Query: 291 IIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKH 350
+I PL+K G+ H + Q A T YRV+ N +WVEL PLT R H
Sbjct: 193 MIELPLAKQPGTGGEK------MHVDEKEGQTARTRYRVIDRAGNRAAWVELHPLTGRTH 246
Query: 351 QLRVHCAEALGTPIVGDYKYG 371
QLRVH A A+G PIVGD KYG
Sbjct: 247 QLRVHMA-AIGHPIVGDGKYG 266
>F6IMX3_9SPHN (tr|F6IMX3) Pseudouridine synthase OS=Novosphingobium sp. PP1Y
GN=PP1Y_AT18960 PE=3 SV=1
Length = 420
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 83/195 (42%), Positives = 105/195 (53%), Gaps = 26/195 (13%)
Query: 178 LVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDE-GPKLVHRLDKESSGI 236
+V+ +D A IVLNKPP L +G + +D +Y D P+LVHRLDK++SG+
Sbjct: 100 MVLTQDRAAIVLNKPPGLATQGGSGMKQHVDGLLD---AYAPDGPRPRLVHRLDKDTSGV 156
Query: 237 LLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPL 296
LL RT S + FS S +S+ K YWALV+G P+ +G+I PL
Sbjct: 157 LLIARTPGSAA----FFSKRFSGRSARKI-----------YWALVVGVPSISDGMIELPL 201
Query: 297 SKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHC 356
+K G+ H E Q A T YRVL N +WVEL PLT R HQLRVH
Sbjct: 202 AKQPGTGGEK------MHVDEEGGQPARTRYRVLDRAGNRAAWVELHPLTGRTHQLRVHM 255
Query: 357 AEALGTPIVGDYKYG 371
A A+G PIVGD KYG
Sbjct: 256 A-AIGHPIVGDGKYG 269
>L8GW82_ACACA (tr|L8GW82) RNA pseudouridine synthase, putative OS=Acanthamoeba
castellanii str. Neff GN=ACA1_062210 PE=4 SV=1
Length = 509
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 90/294 (30%), Positives = 135/294 (45%), Gaps = 46/294 (15%)
Query: 84 WIKYYFKGTWGSVIESHFRKGLVQMEDLIAAD------SFTQKDERMKPMRKMRPNDVMK 137
W+K S+ + RK + + D + +++ ++ R+++ DV+
Sbjct: 135 WLKLQLPHLPNSLFQKLLRKRKAPLLSALVVDEEGDAPTSSKRTAKLDGKRQLQVGDVIT 194
Query: 138 PGARLHVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPV 197
A L A+ RI + + + + ++ K Q VIYKDS +I LNKPP LPV
Sbjct: 195 YPAYLDTLKLDAKPRIKREMNPL-------SEEDTKLAQSWVIYKDSRLIALNKPPGLPV 247
Query: 198 KGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNIN 257
+G V ++ +D +E P+LVHRLDKE SG+L+ GR++ +H LF N +
Sbjct: 248 QGGSDVGDNHLGRFLSALKFDKEEVPRLVHRLDKECSGVLIMGRSRADAAHFTSLFKNKH 307
Query: 258 SAKSSCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTI 317
K S G + PL ++ + + +A +
Sbjct: 308 VTKQS---------------------------GRLAVPLKEL------GQGMGVAANMQD 334
Query: 318 EPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKYG 371
E + AVT Y N S+VEL P T RKHQLRVHCAE L PI+GD KYG
Sbjct: 335 EGAKMAVTRYETRADATNEVSFVELWPWTGRKHQLRVHCAEVLKAPILGDDKYG 388
>Q0ANT2_MARMM (tr|Q0ANT2) Pseudouridine synthase OS=Maricaulis maris (strain
MCS10) GN=Mmar10_1763 PE=3 SV=1
Length = 330
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 77/205 (37%), Positives = 106/205 (51%), Gaps = 25/205 (12%)
Query: 170 DEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEG---PKLV 226
++I Y++ LVIY+D +I NKP L V+G +D + EG P+LV
Sbjct: 82 EDIAYVKSLVIYQDDELIAFNKPAGLAVQGGSKTTRHLDGMLDA-----FGEGLDRPRLV 136
Query: 227 HRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPN 286
HRLDK++SGIL+ G+ + + L F + + K+ YWA+ IG P
Sbjct: 137 HRLDKDTSGILIVGKGPKATARLAKAFQSHKTRKT---------------YWAIAIGVPK 181
Query: 287 EKEGIIHAPLSKVLLNDGKTER-VMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPL 345
K G I + K + +ER M+A E Q A+T Y V+G SWV LRP+
Sbjct: 182 PKMGEIKGFMRKAAASGVDSERETMVAAGHGDEGAQHALTRYVVIGEAGQKASWVALRPV 241
Query: 346 TSRKHQLRVHCAEALGTPIVGDYKY 370
T R HQLRVH A A+GT I+GD KY
Sbjct: 242 TGRTHQLRVHLA-AMGTAILGDKKY 265
>A3WAF6_9SPHN (tr|A3WAF6) Pseudouridine synthase OS=Erythrobacter sp. NAP1
GN=NAP1_00495 PE=3 SV=1
Length = 395
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 87/245 (35%), Positives = 117/245 (47%), Gaps = 30/245 (12%)
Query: 129 KMRPNDVMKPGARLHVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIV 188
+++P D ++ G L VP + + P +EI + +VI + + IV
Sbjct: 53 RVKPEDRLEAGQVLRVPPGGEDQKRG------PKPRRPLTEEEIAEARAMVIRETPSAIV 106
Query: 189 LNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPK--LVHRLDKESSGILLFGRTKDSV 246
LNKPP L +G +D ++ P+ LVHRLDK++SG+LL RT S
Sbjct: 107 LNKPPGLATQGGSKTTKHVDGLLDAFVDDQEEDAPRPRLVHRLDKDTSGVLLIARTPGSA 166
Query: 247 SHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKT 306
+ FS ++ K YWALV+G P +EG I APL+K G+
Sbjct: 167 ATYSRKFSGRSARKV---------------YWALVVGVPEVREGTIDAPLAKQPGTGGEK 211
Query: 307 ERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVG 366
H E Q A T YRV+ +WVEL PLT R HQLRVH A A+G PIVG
Sbjct: 212 ------MHVDEEGGQIAKTRYRVVERAGTRAAWVELEPLTGRTHQLRVHLA-AIGHPIVG 264
Query: 367 DYKYG 371
D KYG
Sbjct: 265 DGKYG 269
>F7VAX9_9PROT (tr|F7VAX9) Pseudouridine synthase OS=Acetobacter tropicalis NBRC
101654 GN=ATPR_0528 PE=3 SV=1
Length = 327
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 106/200 (53%), Gaps = 19/200 (9%)
Query: 172 IKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDK 231
++ ++ +V+Y+D +IVLNKP L V+G + +D + D P+LVHR+D+
Sbjct: 85 VREIKGMVLYQDKQVIVLNKPAGLAVQGGPGITKHVDMMLDGLRAEADDPRPRLVHRIDR 144
Query: 232 ESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGI 291
++SG+LL RT + L F + K+ YWA+V+G P+ G
Sbjct: 145 DTSGLLLLARTPGVAAKLAEAFRGRDVKKT---------------YWAVVVGRPDPLAGE 189
Query: 292 IHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQ 351
I PL++ L G +M+A E Q A + Y V+ SW+ L PLT R HQ
Sbjct: 190 IDQPLAR--LGAGANA-IMVAADRKDEDAQYARSTYEVVDAAARKFSWLALSPLTGRTHQ 246
Query: 352 LRVHCAEALGTPIVGDYKYG 371
LRVHC E+LGTPI+GD KYG
Sbjct: 247 LRVHC-ESLGTPILGDPKYG 265
>K2ETA0_9BACT (tr|K2ETA0) Pseudouridine synthase OS=uncultured bacterium
GN=ACD_16C00232G0014 PE=3 SV=1
Length = 325
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/207 (37%), Positives = 103/207 (49%), Gaps = 25/207 (12%)
Query: 166 YP-NADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPK 224
YP E K+++ +++Y+D +++LNKPP L V+G S+D Y D P+
Sbjct: 88 YPLTQAERKWIKGMILYEDGDLLILNKPPGLAVQGGTKQGKSLDTLLI---RYFEDAKPR 144
Query: 225 LVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGT 284
LVHRLDK++SG+ + +T L F K+ YWALV G
Sbjct: 145 LVHRLDKDTSGVFIIAKTLPMARWLTLAFKERKVQKT---------------YWALVCGV 189
Query: 285 PNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRP 344
P +KEG I LSK G+ RV E A T YR+L + +EL P
Sbjct: 190 PKKKEGSITLALSKKASVHGEKVRV------NTESGARATTYYRILETLGTKMALLELTP 243
Query: 345 LTSRKHQLRVHCAEALGTPIVGDYKYG 371
T R HQLRVHCAE L TPI+GD KYG
Sbjct: 244 KTGRMHQLRVHCAEGLKTPILGDGKYG 270
>J2GEH1_9SPHN (tr|J2GEH1) Pseudouridine synthase OS=Novosphingobium sp. AP12
GN=PMI02_05386 PE=3 SV=1
Length = 453
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/201 (39%), Positives = 102/201 (50%), Gaps = 24/201 (11%)
Query: 171 EIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLD 230
EI+ +V+ +D + IVLNKPP L +G +D + P+LVHRLD
Sbjct: 103 EIELADSMVLTQDRSAIVLNKPPGLATQGGSGQKEHVDGLLDAY--VEKGPRPRLVHRLD 160
Query: 231 KESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEG 290
K++SG+LL RT S + FS + K YWALV+G P+ EG
Sbjct: 161 KDTSGVLLIARTPGSAAFFSKRFSGRTARKI---------------YWALVVGVPDIHEG 205
Query: 291 IIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKH 350
+I PL+K G+ H + Q A T YRV+ N +WVEL PLT R H
Sbjct: 206 LIELPLAKQPGTGGEK------MHVDEKEGQTARTRYRVIDRAGNRAAWVELHPLTGRTH 259
Query: 351 QLRVHCAEALGTPIVGDYKYG 371
QLRVH A A+G PIVGD KYG
Sbjct: 260 QLRVHMA-AIGHPIVGDGKYG 279
>K2L0I4_9PROT (tr|K2L0I4) Pseudouridine synthase OS=Thalassospira xiamenensis M-5
= DSM 17429 GN=TH3_16239 PE=3 SV=1
Length = 365
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 95/288 (32%), Positives = 145/288 (50%), Gaps = 43/288 (14%)
Query: 92 TWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKPMRKMR--PNDVMKPGARLHVPVSMA 149
T+G V + R G ++++ A + +R++P +++R P VM G P +
Sbjct: 30 TFGQV-QKFLRGGQIRVDGKRA-----KAGQRLEPGQEVRVPPAPVMSGGG--MGPWAEG 81
Query: 150 ETRISKRYDAIPSGTLYPNA--DEIKYLQRLVIYKDSAIIVLNKPPKLPVKG----NLPV 203
+ + SG NA +E++ L+ VI+ D ++ +NKP L V+G +L V
Sbjct: 82 NYDAANAAQHVKSGPAKSNATEEELQALRDSVIFYDEVVLAINKPAGLAVQGGTNTDLHV 141
Query: 204 HNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKSSC 263
+D D E PKLVHRLDK++SG+LL R+ + + L
Sbjct: 142 DGMLDAL-----KLDSKERPKLVHRLDKDTSGVLLLARSASAANAL-------------T 183
Query: 264 KAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEA 323
KA+ D + T + YWA+V G P+E+EG+I APL+K + GK M+ + + A
Sbjct: 184 KAFKD--KTTRKLYWAIVTGAPDEREGLIDAPLAK---HGGKGGEKMVIDE---KEGKSA 235
Query: 324 VTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKYG 371
T YR L +W+ L PLT R HQLR HC +A+ PI+GD KYG
Sbjct: 236 QTIYRQLARAGRRAAWLALSPLTGRTHQLRAHC-QAIECPILGDGKYG 282
>M2ZU75_9PROT (tr|M2ZU75) Pseudouridine synthase OS=Magnetospirillum sp. SO-1
GN=H261_05944 PE=3 SV=1
Length = 335
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 99/301 (32%), Positives = 140/301 (46%), Gaps = 46/301 (15%)
Query: 74 QQRDHVTAVNWIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKPMRKMRPN 133
Q+ + W K +F ++E R G V+++ ++ + N
Sbjct: 11 QEEAEIRLDRWFKRHFPAIGHGLLEKWLRAGNVRVDG-----------------KRAKSN 53
Query: 134 DVMKPGARLHVP-VSMAETRISKRYDAIPSGTLYPNADE--IKYLQRLVIYKDSAIIVLN 190
++ G + VP + AE S +A P DE + L+ VIY D II LN
Sbjct: 54 QRLEAGQAIRVPPLPAAEAPGS---EARPREARPAPVDEKTARMLRDAVIYMDDDIIALN 110
Query: 191 KPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQ 250
KPP L V+G + + S+ PKLVHRLDK++SG+LL GRT ++ + L
Sbjct: 111 KPPGLAVQGGTGMADKHLDAWLDALSFGAGR-PKLVHRLDKDTSGVLLLGRTANATAKLA 169
Query: 251 WLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVM 310
F + A C YWALV G P +G I APL+K+ G E+V
Sbjct: 170 AAFKS--RAARKC-------------YWALVAGVPRYPQGRIDAPLAKLPGKAG--EKVA 212
Query: 311 LAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKY 370
+ E + AVT YRV+ + +W+E+ P T R HQLR HC LGTPI+GD KY
Sbjct: 213 VDK----EDGKHAVTYYRVVDSTLKRAAWLEMEPRTGRTHQLRAHCL-LLGTPIMGDGKY 267
Query: 371 G 371
G
Sbjct: 268 G 268
>K9HFR5_9PROT (tr|K9HFR5) Pseudouridine synthase OS=Caenispirillum salinarum AK4
GN=C882_0585 PE=3 SV=1
Length = 325
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 76/201 (37%), Positives = 107/201 (53%), Gaps = 23/201 (11%)
Query: 171 EIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLD 230
+ ++ VI+ D +IVLNKPP L +G + +D YDY + P+LVHRLD
Sbjct: 85 DAAMIRACVIHMDDDVIVLNKPPGLATQGGTGTNRHIDGMLEAL-RYDYPDKPRLVHRLD 143
Query: 231 KESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEG 290
+++SG+L+ GRT + S L F + ++ K YWA+V+G P EG
Sbjct: 144 RDTSGVLVVGRTAKAASVLAAAFKSRDARKV---------------YWAVVVGAPKPSEG 188
Query: 291 IIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKH 350
+ APL+K GK M +P AVT +R + +W+E+ PLT R H
Sbjct: 189 RLSAPLAKA---PGKAGERMEVDEDWGKP---AVTVFRTVEAVAGKAAWLEMEPLTGRTH 242
Query: 351 QLRVHCAEALGTPIVGDYKYG 371
QLRVH A A+GTPI+GD KYG
Sbjct: 243 QLRVHAA-AMGTPILGDGKYG 262
>A3JN53_9RHOB (tr|A3JN53) Pseudouridine synthase OS=Rhodobacteraceae bacterium
HTCC2150 GN=RB2150_13716 PE=3 SV=1
Length = 347
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 79/204 (38%), Positives = 105/204 (51%), Gaps = 22/204 (10%)
Query: 173 KYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKE 232
K + +VIYKD II LNKPP +PV+G +D +D DE P+LVHRLDK+
Sbjct: 87 KLMMDMVIYKDDYIIALNKPPGIPVQGGSGQKRHIDGLSEAL-RFDSDEKPRLVHRLDKD 145
Query: 233 SSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGII 292
+SG+LL R + S S L +F + S K YWA V G P+ K G I
Sbjct: 146 TSGVLLLARNQRSASELTAVFRSRESRKI---------------YWAAVGGVPHPKMGTI 190
Query: 293 HAPLSKVLLN--DGKTERVMLAHHSTIEPR---QEAVTEYRVLGPKINGCSWVELRPLTS 347
L K + G E+++ H I+ + A T+Y V+ +W+ L P+T
Sbjct: 191 RFGLVKAPGHGPSGGGEKMICIHPRDIDKTDGAKRATTDYAVMTTLARRSAWMALVPVTG 250
Query: 348 RKHQLRVHCAEALGTPIVGDYKYG 371
R HQLR H AE LG PI+GD KYG
Sbjct: 251 RTHQLRAHMAE-LGHPIIGDGKYG 273
>M9RH75_9RHOB (tr|M9RH75) Ribosomal large subunit pseudouridine synthase C
OS=Octadecabacter antarcticus 307 GN=rluC PE=4 SV=1
Length = 347
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 79/206 (38%), Positives = 106/206 (51%), Gaps = 22/206 (10%)
Query: 171 EIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLD 230
+I+ +Q VIYKD +I LNKP LP +G +D + YDE P+LVHRLD
Sbjct: 84 DIQLIQGCVIYKDDHVIALNKPAGLPTQGGSKQLRHVDGMAEAL-RFGYDEKPRLVHRLD 142
Query: 231 KESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEG 290
K++SG+L+ RT+ + L F + N+ K YWALV G P K G
Sbjct: 143 KDTSGVLILARTRMAAKSLTDAFRHRNTEKI---------------YWALVAGVPIPKLG 187
Query: 291 IIHAPLSKVLLNDGK--TERVMLAHHSTIEPR---QEAVTEYRVLGPKINGCSWVELRPL 345
+ L K + GK ER+ H ++ + A+T Y VL + +WV L P+
Sbjct: 188 SVKYGLVKQGGHGGKGDNERMKCVHPKDVDKTFGAKRALTNYTVLTSLADRTAWVALTPV 247
Query: 346 TSRKHQLRVHCAEALGTPIVGDYKYG 371
T R HQLR H AE +G PIVGD KYG
Sbjct: 248 TGRTHQLRAHMAE-IGHPIVGDGKYG 272
>H1UGA7_ACEPA (tr|H1UGA7) Pseudouridine synthase OS=Acetobacter pasteurianus NBRC
101655 GN=APT_1178 PE=3 SV=1
Length = 328
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 104/199 (52%), Gaps = 20/199 (10%)
Query: 173 KYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKE 232
+ ++++V+Y+D +IVLNKP L V+G + +D D D P+LVHR+DK+
Sbjct: 86 REIRKMVVYQDKHVIVLNKPAGLAVQGGPGITKHVDMMLDGLREED-DPRPRLVHRIDKD 144
Query: 233 SSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGII 292
+SG+LL RT + L F + K YWA+V+G P+ G I
Sbjct: 145 TSGLLLLARTPGVAAKLAASFRGRDVKKI---------------YWAVVVGRPDPLSGEI 189
Query: 293 HAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQL 352
PL+++ G + +A Q A + Y VL SW+EL PLT R HQL
Sbjct: 190 DQPLARLGAGPGS---ITVAADRKDADAQSARSVYEVLDSAARKFSWLELSPLTGRTHQL 246
Query: 353 RVHCAEALGTPIVGDYKYG 371
RVHC E+LGTPI+GD KYG
Sbjct: 247 RVHC-ESLGTPILGDPKYG 264
>K2L815_9PROT (tr|K2L815) Pseudouridine synthase OS=Thalassospira profundimaris
WP0211 GN=TH2_19569 PE=3 SV=1
Length = 367
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 82/234 (35%), Positives = 121/234 (51%), Gaps = 27/234 (11%)
Query: 151 TRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXX 210
+ + +R A P+ + A E++ L+ VI+ D ++ +NKP L V+G + +D
Sbjct: 88 SEVQQRKHAGPAKSDATEA-ELQALRDSVIFYDELVLAINKPAGLAVQGGTNTNVHVDGM 146
Query: 211 XXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDAC 270
D E PKLVHRLDK++SG+LL R+ ++A + KA+ D
Sbjct: 147 LDAL-KLDSKERPKLVHRLDKDTSGVLLLARS-------------ASAAHALTKAFKD-- 190
Query: 271 EATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVL 330
++T + YWA+V G P E+EG+I APL+K+ GK M+ + Q +
Sbjct: 191 KSTRKLYWAIVTGAPAEREGMIDAPLAKIA---GKGGEKMVIDEKLGKSAQSVFRQLHRA 247
Query: 331 GPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKYGW---FVHNRWKQM 381
G K +W+ L PLT R HQLRVHC EA+ PI+GD KYG F+ QM
Sbjct: 248 GRK---AAWLALSPLTGRTHQLRVHC-EAIECPILGDGKYGGPKAFIDGLSNQM 297
>H1UQ66_ACEPA (tr|H1UQ66) Pseudouridine synthase OS=Acetobacter pasteurianus
subsp. pasteurianus LMG 1262 = NBRC 106471 GN=APS_1399
PE=3 SV=1
Length = 328
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 104/199 (52%), Gaps = 20/199 (10%)
Query: 173 KYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKE 232
+ ++++V+Y+D +IVLNKP L V+G + +D D D P+LVHR+DK+
Sbjct: 86 REIRKMVVYQDKHVIVLNKPAGLAVQGGPGITKHVDMMLDGLREED-DPRPRLVHRIDKD 144
Query: 233 SSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGII 292
+SG+LL RT + L F + K YWA+V+G P+ G I
Sbjct: 145 TSGLLLLARTPGVAAKLAASFRGRDVKKI---------------YWAVVVGRPDPLSGEI 189
Query: 293 HAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQL 352
PL+++ G + +A Q A + Y VL SW+EL PLT R HQL
Sbjct: 190 DQPLARLGAGPGS---ITVAADRKDADAQSARSVYEVLDSAARKFSWLELSPLTGRTHQL 246
Query: 353 RVHCAEALGTPIVGDYKYG 371
RVHC E+LGTPI+GD KYG
Sbjct: 247 RVHC-ESLGTPILGDPKYG 264
>F8JIE9_HYPSM (tr|F8JIE9) Pseudouridine synthase OS=Hyphomicrobium sp. (strain
MC1) GN=rluC PE=3 SV=1
Length = 331
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 83/292 (28%), Positives = 136/292 (46%), Gaps = 38/292 (13%)
Query: 84 WIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKPMRKMRPNDVMKPGARLH 143
W + +F + ++ R G V+++ ++ + ND + GA +
Sbjct: 25 WFRVHFPEVGYTYLQKLLRSGQVRVDS-----------------KRAQANDRLNVGAEIR 67
Query: 144 VPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPV 203
VP + + + S P G + D I +++++++D ++VLNKP L V+G
Sbjct: 68 VPAIVRQPKKSGPGLQAPPGVSKGDRDTI---EKMILFEDDYVLVLNKPFGLAVQGGTGT 124
Query: 204 HNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKSSC 263
+D E P+LVHRLD++++G+LL +T+++ + L F ++AK+
Sbjct: 125 KKHIDGMLEGMADRFGGERPRLVHRLDRDTTGVLLVAKTREAAAKLGRTFQTRSAAKT-- 182
Query: 264 KAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEA 323
YWALV G P +G + A L K DG +RV A + A
Sbjct: 183 -------------YWALVKGVPKPPQGKVEAALVKASGPDG--DRVRKAKPGEQDVAMHA 227
Query: 324 VTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVH 375
T Y V+ + +WV L+P+T R+HQLR H +G PIVGD KY VH
Sbjct: 228 TTHYSVIDRAAHKTAWVSLKPVTGRQHQLRAHM-HLIGHPIVGDNKYEGDVH 278
>A3SSY4_9RHOB (tr|A3SSY4) Pseudouridine synthase OS=Sulfitobacter sp. NAS-14.1
GN=NAS141_09446 PE=3 SV=1
Length = 349
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 78/216 (36%), Positives = 106/216 (49%), Gaps = 22/216 (10%)
Query: 161 PSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYD 220
P T AD K+++ VIY+D II LNKPP LPV+G + ++ D
Sbjct: 76 PKRTRISEAD-TKFIRSCVIYRDDHIIALNKPPGLPVQGGSGQSDRHVDALADALMFELD 134
Query: 221 EGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWAL 280
E P+LVHRLDK++SG+L+ RT+ + L F + T + YWA
Sbjct: 135 EKPRLVHRLDKDTSGVLIMARTRSIAAALTASFRH---------------RETRKIYWAA 179
Query: 281 VIGTPNEKEGIIHAPLSKVLLND--GKTERVMLAH---HSTIEPRQEAVTEYRVLGPKIN 335
V G P+ + G I L K + G+ E++ H T E + A T+Y L
Sbjct: 180 VAGVPHPRNGTIKFGLVKAFGHGARGEGEKMYCVHPKDMETTEGAKRATTDYATLAQAGK 239
Query: 336 GCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKYG 371
W+ L P+T R HQLR H AE +G PIVGD KYG
Sbjct: 240 RTCWMALIPVTGRTHQLRAHMAE-IGHPIVGDGKYG 274
>A3S822_9RHOB (tr|A3S822) Pseudouridine synthase OS=Sulfitobacter sp. EE-36
GN=EE36_04518 PE=3 SV=1
Length = 349
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 78/216 (36%), Positives = 106/216 (49%), Gaps = 22/216 (10%)
Query: 161 PSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYD 220
P T AD K+++ VIY+D II LNKPP LPV+G + ++ D
Sbjct: 76 PKRTRISEAD-TKFIRSCVIYRDDHIIALNKPPGLPVQGGSGQSDRHVDALADALMFELD 134
Query: 221 EGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWAL 280
E P+LVHRLDK++SG+L+ RT+ + L F + T + YWA
Sbjct: 135 EKPRLVHRLDKDTSGVLIMARTRSIAAALTASFRH---------------RETRKIYWAA 179
Query: 281 VIGTPNEKEGIIHAPLSKVLLND--GKTERVMLAH---HSTIEPRQEAVTEYRVLGPKIN 335
V G P+ + G I L K + G+ E++ H T E + A T+Y L
Sbjct: 180 VAGVPHPRNGTIKFGLVKAFGHGARGEGEKMYCVHPKDMETTEGAKRATTDYATLAQAGK 239
Query: 336 GCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKYG 371
W+ L P+T R HQLR H AE +G PIVGD KYG
Sbjct: 240 RTCWMALIPVTGRTHQLRAHMAE-IGHPIVGDGKYG 274
>M1CF72_SOLTU (tr|M1CF72) Uncharacterized protein OS=Solanum tuberosum
GN=PGSC0003DMG400025766 PE=4 SV=1
Length = 317
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 81/272 (29%), Positives = 138/272 (50%), Gaps = 34/272 (12%)
Query: 58 LSLPPFP--------GHPLPGASGQQRDH----VTAVNWIKYYFKGTWGSVIESHFRKGL 105
L+LPPF G L G +++ +TA+ W++ S+++ FR
Sbjct: 59 LTLPPFTATVNGAALGRELAGVKMDVKENSTNTMTALKWVQRCCPELPKSLVQKLFRLRQ 118
Query: 106 VQMEDLIAADSFTQKDERMKPMRKMRPNDVMKPGARLHVPVSMAETRISKRYDAIPSGTL 165
V+ DS +++R K ++ + M G R+ +P+++ + PS +
Sbjct: 119 VRR------DSSNVEEQRPK---RVSAKESMNVGDRIFLPITVQK---------FPSEKV 160
Query: 166 --YPNADEI-KYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEG 222
YP+++E K++ L +YKD I+V+NKPP +PV+G + + S+D ++Y E
Sbjct: 161 VYYPSSEEERKFVHSLELYKDPEIVVVNKPPGMPVQGGIGIKRSLDELAAKYMRHEYSEA 220
Query: 223 PKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVI 282
P+LVHRLD++ SG+L+ GRT+ S S L +F + S + ++YWALVI
Sbjct: 221 PRLVHRLDRDCSGLLVMGRTQLSASALHSIFRE-KTFDSQNEDLESKKRILQKKYWALVI 279
Query: 283 GTPNEKEGIIHAPLSKVLLNDGKTERVMLAHH 314
G P GII APL K + N ++ +++ H
Sbjct: 280 GCPRRSGGIISAPLGKTMGNLSASQLCLMSEH 311
>Q0BUM2_GRABC (tr|Q0BUM2) Pseudouridine synthase OS=Granulibacter bethesdensis
(strain ATCC BAA-1260 / CGDNIH1) GN=GbCGDNIH1_0582 PE=3
SV=1
Length = 366
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 106/199 (53%), Gaps = 21/199 (10%)
Query: 173 KYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKE 232
K L+ ++YKD +IVLNKP LP +G + +D + D+ P+LVHRLD++
Sbjct: 119 KELESWILYKDDHLIVLNKPSGLPSQGGPGITRHLDGLLDGL-RFGRDDRPRLVHRLDRD 177
Query: 233 SSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGII 292
+SG+++ R+ + L LF + K YWA+V G P EG I
Sbjct: 178 TSGVIVIARSPGVAAKLAALFRTRETEKV---------------YWAVVAGRPVPVEGRI 222
Query: 293 HAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQL 352
PL L + + E V+LA + + A+T+YR L +W+ELRPLT R HQL
Sbjct: 223 DRPL---LRQNDRNEPVVLADRKDRD-KVTAITDYRTLDHAARKLAWLELRPLTGRMHQL 278
Query: 353 RVHCAEALGTPIVGDYKYG 371
RVHCA A+ PI+GD +YG
Sbjct: 279 RVHCA-AMDAPILGDERYG 296
>Q92QE2_RHIME (tr|Q92QE2) Pseudouridine synthase OS=Rhizobium meliloti (strain
1021) GN=rluC PE=3 SV=1
Length = 330
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 90/288 (31%), Positives = 139/288 (48%), Gaps = 41/288 (14%)
Query: 84 WIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKPMRKMR-PNDVMKPGARL 142
W K +F G ++ R G ++++ A + D R++P + +R P + P
Sbjct: 21 WFKVHFPGLGFGPLQKLLRSGQIRVDGARA-----KSDTRIQPGQTIRIPPLGVDPKEAK 75
Query: 143 HVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLP 202
P+ + R S P G L L R+V+++D+ +IVLNKP L V+G
Sbjct: 76 SGPIGGRDLRQS------PDGEL---------LSRMVLHEDAKVIVLNKPAGLAVQGGSG 120
Query: 203 VHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKSS 262
V+ +D S E P+LVHRLD+++SG+L+ RT+ + L F ++ K+
Sbjct: 121 VNRHIDKMLEAWTSQK-GEKPRLVHRLDRDTSGVLVVARTRGAAQQLTAAFRERDTKKT- 178
Query: 263 CKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQE 322
YWALV G P ++E I L K DG +RV +A H +
Sbjct: 179 --------------YWALVRGVPRKREDKISTWLVKEPTPDG--DRVRIAKHGE-DGADH 221
Query: 323 AVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKY 370
A++ YR++ +W+E+ P T R HQLRVH A +G PI+GD KY
Sbjct: 222 AISYYRIVEQAGQNLAWLEMEPYTGRTHQLRVHAAH-IGHPIIGDPKY 268
>F7X279_SINMM (tr|F7X279) Pseudouridine synthase OS=Sinorhizobium meliloti
(strain SM11) GN=rluC PE=3 SV=1
Length = 330
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 90/288 (31%), Positives = 139/288 (48%), Gaps = 41/288 (14%)
Query: 84 WIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKPMRKMR-PNDVMKPGARL 142
W K +F G ++ R G ++++ A + D R++P + +R P + P
Sbjct: 21 WFKVHFPGLGFGPLQKLLRSGQIRVDGARA-----KSDTRIQPGQTIRIPPLGVDPKEAK 75
Query: 143 HVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLP 202
P+ + R S P G L L R+V+++D+ +IVLNKP L V+G
Sbjct: 76 SGPIGGRDLRQS------PDGEL---------LSRMVLHEDAKVIVLNKPAGLAVQGGSG 120
Query: 203 VHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKSS 262
V+ +D S E P+LVHRLD+++SG+L+ RT+ + L F ++ K+
Sbjct: 121 VNRHIDKMLEAWTSQK-GEKPRLVHRLDRDTSGVLVVARTRGAAQQLTAAFRERDTKKT- 178
Query: 263 CKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQE 322
YWALV G P ++E I L K DG +RV +A H +
Sbjct: 179 --------------YWALVRGVPRKREDKISTWLVKEPTPDG--DRVRIAKHGE-DGADH 221
Query: 323 AVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKY 370
A++ YR++ +W+E+ P T R HQLRVH A +G PI+GD KY
Sbjct: 222 AISYYRIVEQAGQNLAWLEMEPYTGRTHQLRVHAAH-IGHPIIGDPKY 268
>F6DXF2_SINMK (tr|F6DXF2) Pseudouridine synthase OS=Sinorhizobium meliloti
(strain AK83) GN=Sinme_1183 PE=3 SV=1
Length = 330
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 90/288 (31%), Positives = 139/288 (48%), Gaps = 41/288 (14%)
Query: 84 WIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKPMRKMR-PNDVMKPGARL 142
W K +F G ++ R G ++++ A + D R++P + +R P + P
Sbjct: 21 WFKVHFPGLGFGPLQKLLRSGQIRVDGARA-----KSDTRIQPGQTIRIPPLGVDPKEAK 75
Query: 143 HVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLP 202
P+ + R S P G L L R+V+++D+ +IVLNKP L V+G
Sbjct: 76 SGPIGGRDLRQS------PDGEL---------LSRMVLHEDAKVIVLNKPAGLAVQGGSG 120
Query: 203 VHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKSS 262
V+ +D S E P+LVHRLD+++SG+L+ RT+ + L F ++ K+
Sbjct: 121 VNRHIDKMLEAWTSQK-GEKPRLVHRLDRDTSGVLVVARTRGAAQQLTAAFRERDTKKT- 178
Query: 263 CKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQE 322
YWALV G P ++E I L K DG +RV +A H +
Sbjct: 179 --------------YWALVRGVPRKREDKISTWLVKEPTPDG--DRVRIAKHGE-DGADH 221
Query: 323 AVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKY 370
A++ YR++ +W+E+ P T R HQLRVH A +G PI+GD KY
Sbjct: 222 AISYYRIVEQAGQNLAWLEMEPYTGRTHQLRVHAAH-IGHPIIGDPKY 268
>F6BVU8_SINMB (tr|F6BVU8) Pseudouridine synthase OS=Sinorhizobium meliloti
(strain BL225C) GN=SinmeB_1017 PE=3 SV=1
Length = 330
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 90/288 (31%), Positives = 139/288 (48%), Gaps = 41/288 (14%)
Query: 84 WIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKPMRKMR-PNDVMKPGARL 142
W K +F G ++ R G ++++ A + D R++P + +R P + P
Sbjct: 21 WFKVHFPGLGFGPLQKLLRSGQIRVDGARA-----KSDTRIQPGQTIRIPPLGVDPKEAK 75
Query: 143 HVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLP 202
P+ + R S P G L L R+V+++D+ +IVLNKP L V+G
Sbjct: 76 SGPIGGRDLRQS------PDGEL---------LSRMVLHEDAKVIVLNKPAGLAVQGGSG 120
Query: 203 VHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKSS 262
V+ +D S E P+LVHRLD+++SG+L+ RT+ + L F ++ K+
Sbjct: 121 VNRHIDKMLEAWTSQK-GEKPRLVHRLDRDTSGVLVVARTRGAAQQLTAAFRERDTKKT- 178
Query: 263 CKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQE 322
YWALV G P ++E I L K DG +RV +A H +
Sbjct: 179 --------------YWALVRGVPRKREDKISTWLVKEPTPDG--DRVRIAKHGE-DGADH 221
Query: 323 AVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKY 370
A++ YR++ +W+E+ P T R HQLRVH A +G PI+GD KY
Sbjct: 222 AISYYRIVEQAGQNLAWLEMEPYTGRTHQLRVHAAH-IGHPIIGDPKY 268
>M4N0A3_RHIML (tr|M4N0A3) Putative ribosomal large subunit pseudouridine synthase
C OS=Sinorhizobium meliloti 2011 GN=rluC PE=4 SV=1
Length = 330
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 90/288 (31%), Positives = 139/288 (48%), Gaps = 41/288 (14%)
Query: 84 WIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKPMRKMR-PNDVMKPGARL 142
W K +F G ++ R G ++++ A + D R++P + +R P + P
Sbjct: 21 WFKVHFPGLGFGPLQKLLRSGQIRVDGARA-----KSDTRIQPGQTIRIPPLGVDPKEAK 75
Query: 143 HVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLP 202
P+ + R S P G L L R+V+++D+ +IVLNKP L V+G
Sbjct: 76 SGPIGGRDLRQS------PDGEL---------LSRMVLHEDAKVIVLNKPAGLAVQGGSG 120
Query: 203 VHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKSS 262
V+ +D S E P+LVHRLD+++SG+L+ RT+ + L F ++ K+
Sbjct: 121 VNRHIDKMLEAWTSQK-GEKPRLVHRLDRDTSGVLVVARTRGAAQQLTAAFRERDTKKT- 178
Query: 263 CKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQE 322
YWALV G P ++E I L K DG +RV +A H +
Sbjct: 179 --------------YWALVRGVPRKREDKISTWLVKEPTPDG--DRVRIAKHGE-DGADH 221
Query: 323 AVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKY 370
A++ YR++ +W+E+ P T R HQLRVH A +G PI+GD KY
Sbjct: 222 AISYYRIVEQAGQNLAWLEMEPYTGRTHQLRVHAAH-IGHPIIGDPKY 268
>M4IA60_RHIML (tr|M4IA60) Pseudouridine synthase, RluA family OS=Sinorhizobium
meliloti GR4 GN=C770_GR4Chr1406 PE=4 SV=1
Length = 330
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 90/288 (31%), Positives = 139/288 (48%), Gaps = 41/288 (14%)
Query: 84 WIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKPMRKMR-PNDVMKPGARL 142
W K +F G ++ R G ++++ A + D R++P + +R P + P
Sbjct: 21 WFKVHFPGLGFGPLQKLLRSGQIRVDGARA-----KSDTRIQPGQTIRIPPLGVDPKEAK 75
Query: 143 HVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLP 202
P+ + R S P G L L R+V+++D+ +IVLNKP L V+G
Sbjct: 76 SGPIGGRDLRQS------PDGEL---------LSRMVLHEDAKVIVLNKPAGLAVQGGSG 120
Query: 203 VHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKSS 262
V+ +D S E P+LVHRLD+++SG+L+ RT+ + L F ++ K+
Sbjct: 121 VNRHIDKMLEAWTSQK-GEKPRLVHRLDRDTSGVLVVARTRGAAQQLTAAFRERDTKKT- 178
Query: 263 CKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQE 322
YWALV G P ++E I L K DG +RV +A H +
Sbjct: 179 --------------YWALVRGVPRKREDKISTWLVKEPTPDG--DRVRIAKHGE-DGADH 221
Query: 323 AVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKY 370
A++ YR++ +W+E+ P T R HQLRVH A +G PI+GD KY
Sbjct: 222 AISYYRIVEQAGQNLAWLEMEPYTGRTHQLRVHAAH-IGHPIIGDPKY 268
>K0PAA9_RHIML (tr|K0PAA9) Pseudouridine synthase OS=Sinorhizobium meliloti Rm41
GN=rluC PE=3 SV=1
Length = 330
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 90/288 (31%), Positives = 139/288 (48%), Gaps = 41/288 (14%)
Query: 84 WIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKPMRKMR-PNDVMKPGARL 142
W K +F G ++ R G ++++ A + D R++P + +R P + P
Sbjct: 21 WFKVHFPGLGFGPLQKLLRSGQIRVDGARA-----KSDTRIQPGQTIRIPPLGVDPKEAK 75
Query: 143 HVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLP 202
P+ + R S P G L L R+V+++D+ +IVLNKP L V+G
Sbjct: 76 SGPIGGRDLRQS------PDGEL---------LSRMVLHEDAKVIVLNKPAGLAVQGGSG 120
Query: 203 VHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKSS 262
V+ +D S E P+LVHRLD+++SG+L+ RT+ + L F ++ K+
Sbjct: 121 VNRHIDKMLEAWTSQK-GEKPRLVHRLDRDTSGVLVVARTRGAAQQLTAAFRERDTKKT- 178
Query: 263 CKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQE 322
YWALV G P ++E I L K DG +RV +A H +
Sbjct: 179 --------------YWALVRGVPRKREDKISTWLVKEPTPDG--DRVRIAKHGE-DGADH 221
Query: 323 AVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKY 370
A++ YR++ +W+E+ P T R HQLRVH A +G PI+GD KY
Sbjct: 222 AISYYRIVEQAGQNLAWLEMEPYTGRTHQLRVHAAH-IGHPIIGDPKY 268
>H0GB97_RHIML (tr|H0GB97) Pseudouridine synthase OS=Sinorhizobium meliloti
CCNWSX0020 GN=SM0020_34058 PE=3 SV=1
Length = 330
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 90/288 (31%), Positives = 139/288 (48%), Gaps = 41/288 (14%)
Query: 84 WIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKPMRKMR-PNDVMKPGARL 142
W K +F G ++ R G ++++ A + D R++P + +R P + P
Sbjct: 21 WFKVHFPGLGFGPLQKLLRSGQIRVDGARA-----KSDTRIQPGQTIRIPPLGVDPKEAK 75
Query: 143 HVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLP 202
P+ + R S P G L L R+V+++D+ +IVLNKP L V+G
Sbjct: 76 SGPIGGRDLRQS------PDGEL---------LSRMVLHEDAKVIVLNKPAGLAVQGGSG 120
Query: 203 VHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKSS 262
V+ +D S E P+LVHRLD+++SG+L+ RT+ + L F ++ K+
Sbjct: 121 VNRHIDKMLEAWTSQK-GEKPRLVHRLDRDTSGVLVVARTRGAAQQLTAAFRERDTKKT- 178
Query: 263 CKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQE 322
YWALV G P ++E I L K DG +RV +A H +
Sbjct: 179 --------------YWALVRGVPRKREDKISTWLVKEPTPDG--DRVRIAKHGE-DGADH 221
Query: 323 AVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKY 370
A++ YR++ +W+E+ P T R HQLRVH A +G PI+GD KY
Sbjct: 222 AISYYRIVEQAGQNLAWLEMEPYTGRTHQLRVHAAH-IGHPIIGDPKY 268
>A3VYV2_9RHOB (tr|A3VYV2) Pseudouridine synthase OS=Roseovarius sp. 217
GN=ROS217_12656 PE=3 SV=1
Length = 347
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 95/296 (32%), Positives = 135/296 (45%), Gaps = 51/296 (17%)
Query: 84 WIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKPMRKMRPNDVMKPGARLH 143
WI+ F IE RKG V+++ +KP RL
Sbjct: 21 WIRRLFPHVGQVQIEKMCRKGEVRVD-----------------------GGRVKPATRLE 57
Query: 144 VPVSMAETRISK--RYDAIPSGTLYP-NADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGN 200
V S+ RI D P+G L + + K +Q VIY+D +I LNKPP LPV+G
Sbjct: 58 VGQSV---RIPPLPDTDERPTGALARISPADAKMIQSCVIYRDDHVIALNKPPGLPVQGG 114
Query: 201 LPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAK 260
+D + +E P+LVHRLDK++SG+LL RT+++ L F + N+ K
Sbjct: 115 SKQTRHVDGLAEAL-RFGAEEKPRLVHRLDKDTSGVLLLARTREAAKGLTAAFRHRNTRK 173
Query: 261 SSCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLND--GKTERVMLAHHSTIE 318
YWA V G P + G + L K + G+ E+++ H +E
Sbjct: 174 I---------------YWAAVAGVPTPRMGTVRYGLVKAPGHGAKGEGEKMICVHPREVE 218
Query: 319 PR---QEAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKYG 371
+ A T+Y V+ SW+ L P+T R HQLR H AE +G P+VGD KYG
Sbjct: 219 STPGAKPATTDYAVIEAAGARTSWMALIPVTGRTHQLRAHMAE-IGHPVVGDGKYG 273
>A3PGP1_RHOS1 (tr|A3PGP1) Pseudouridine synthase OS=Rhodobacter sphaeroides
(strain ATCC 17029 / ATH 2.4.9) GN=Rsph17029_0391 PE=3
SV=1
Length = 346
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 81/216 (37%), Positives = 110/216 (50%), Gaps = 22/216 (10%)
Query: 161 PSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYD 220
P + +DE + +Q VIY+D+ IIVLNKPP LP +G + Y
Sbjct: 75 PQASRVTKSDE-QMIQDCVIYRDNDIIVLNKPPGLPSQGGSGQGERHVDGLTEALKFGYK 133
Query: 221 EGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWAL 280
E PKLVHRLDK++SG+L+ RT L F + N+ K YWAL
Sbjct: 134 ERPKLVHRLDKDTSGVLVLARTDRVARALSESFRHRNTRKI---------------YWAL 178
Query: 281 VIGTPNEKEGIIHAPLSKVLLN--DGKTERVMLAHHSTIEPRQE---AVTEYRVLGPKIN 335
V G P+ K+G I L K + G+ E+++ H + + E A T++ L +
Sbjct: 179 VAGVPSPKQGSIKYALMKAPGHGRGGEGEKMLCIHPAKVGDYPEAKRAQTDFFTLWFLGS 238
Query: 336 GCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKYG 371
C+W+ L P+T R HQLR H AE LG PIVGD KYG
Sbjct: 239 RCAWMALSPITGRTHQLRAHMAE-LGHPIVGDGKYG 273
>F1YTQ1_9PROT (tr|F1YTQ1) Pseudouridine synthase OS=Acetobacter pomorum DM001
GN=rluC PE=3 SV=1
Length = 328
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 104/199 (52%), Gaps = 20/199 (10%)
Query: 173 KYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKE 232
+ ++++V+Y+D +IVLNKP L V+G + +D D D P+LVHR+DK+
Sbjct: 86 REIRKMVVYQDKHVIVLNKPAGLAVQGGPGITKHIDMMLDGLREED-DPRPRLVHRIDKD 144
Query: 233 SSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGII 292
+SG+LL RT + L F + K YWA+V+G P+ G I
Sbjct: 145 TSGLLLLARTPGVAAKLAASFRGRDVKKI---------------YWAVVVGRPDPLSGEI 189
Query: 293 HAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQL 352
PL+++ G + +A Q A + Y VL SW+EL PLT R HQL
Sbjct: 190 DQPLARLGAGPGS---ITVAADRKDADAQFARSVYEVLDSAARKFSWLELSPLTGRTHQL 246
Query: 353 RVHCAEALGTPIVGDYKYG 371
RVHC E+LGTPI+GD KYG
Sbjct: 247 RVHC-ESLGTPILGDPKYG 264
>D5AM27_RHOCB (tr|D5AM27) Pseudouridine synthase OS=Rhodobacter capsulatus
(strain ATCC BAA-309 / NBRC 16581 / SB1003) GN=rluC PE=3
SV=1
Length = 355
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 88/254 (34%), Positives = 123/254 (48%), Gaps = 32/254 (12%)
Query: 129 KMRPNDVMKPGARLHVP------VSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYK 182
+++ +D + PG + VP E+R R DA T ADE K +Q V++K
Sbjct: 49 RVKASDRIGPGMEVRVPPLPEAGAKAPESRSEARRDA----TQISPADE-KMIQAAVLWK 103
Query: 183 DSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRT 242
D II LNKP LP +G + + Y + PK+VHRLDK++SG+LL RT
Sbjct: 104 DEHIIALNKPAGLPSQGGSGQGDRHVDGLLEALKFGYKDRPKMVHRLDKDTSGVLLIART 163
Query: 243 KDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLN 302
L F + T + YWA V G P+ K+G I L K +
Sbjct: 164 DRVARALSESFR---------------LKTTRKIYWAAVAGVPSPKKGTIRYGLVKAPGH 208
Query: 303 D--GKTERVMLAHHSTIEPR---QEAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCA 357
G+ E+++ H S ++ + A T++ V+ + SWV L P+T R HQLR H A
Sbjct: 209 GRGGEGEKMLCIHPSKVDATPDAKRATTDFAVIDGLGSRVSWVGLVPITGRTHQLRAHMA 268
Query: 358 EALGTPIVGDYKYG 371
E LG PIVGD KYG
Sbjct: 269 E-LGHPIVGDGKYG 281
>C7JBV6_ACEP3 (tr|C7JBV6) Pseudouridine synthase OS=Acetobacter pasteurianus
(strain NBRC 3283 / LMG 1513 / CCTM 1153) GN=APA01_17220
PE=3 SV=1
Length = 328
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 103/199 (51%), Gaps = 20/199 (10%)
Query: 173 KYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKE 232
+ ++++V+Y+D +I LNKP L V+G + +D D D P+LVHR+DK+
Sbjct: 86 REIRKMVVYQDKHVIALNKPAGLAVQGGPGITKHVDMMLDGLREED-DPRPRLVHRIDKD 144
Query: 233 SSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGII 292
+SG+LL RT + L F + K YWA+V+G P+ G I
Sbjct: 145 TSGLLLLARTPGVAAKLAASFRGRDVKKI---------------YWAVVVGRPDPLSGEI 189
Query: 293 HAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQL 352
PL+++ G + +A Q A + Y VL SW+EL PLT R HQL
Sbjct: 190 DQPLARLGAGPGS---ITVAADRKDADAQSARSVYEVLDSAARKFSWLELSPLTGRTHQL 246
Query: 353 RVHCAEALGTPIVGDYKYG 371
RVHC E+LGTPI+GD KYG
Sbjct: 247 RVHC-ESLGTPILGDPKYG 264
>C7L3T3_ACEPA (tr|C7L3T3) Pseudouridine synthase OS=Acetobacter pasteurianus IFO
3283-12 GN=APA12_17220 PE=3 SV=1
Length = 328
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 103/199 (51%), Gaps = 20/199 (10%)
Query: 173 KYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKE 232
+ ++++V+Y+D +I LNKP L V+G + +D D D P+LVHR+DK+
Sbjct: 86 REIRKMVVYQDKHVIALNKPAGLAVQGGPGITKHVDMMLDGLREED-DPRPRLVHRIDKD 144
Query: 233 SSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGII 292
+SG+LL RT + L F + K YWA+V+G P+ G I
Sbjct: 145 TSGLLLLARTPGVAAKLAASFRGRDVKKI---------------YWAVVVGRPDPLSGEI 189
Query: 293 HAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQL 352
PL+++ G + +A Q A + Y VL SW+EL PLT R HQL
Sbjct: 190 DQPLARLGAGPGS---ITVAADRKDADAQSARSVYEVLDSAARKFSWLELSPLTGRTHQL 246
Query: 353 RVHCAEALGTPIVGDYKYG 371
RVHC E+LGTPI+GD KYG
Sbjct: 247 RVHC-ESLGTPILGDPKYG 264
>C7KU06_ACEPA (tr|C7KU06) Pseudouridine synthase OS=Acetobacter pasteurianus IFO
3283-01-42C GN=APA42C_17220 PE=3 SV=1
Length = 328
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 103/199 (51%), Gaps = 20/199 (10%)
Query: 173 KYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKE 232
+ ++++V+Y+D +I LNKP L V+G + +D D D P+LVHR+DK+
Sbjct: 86 REIRKMVVYQDKHVIALNKPAGLAVQGGPGITKHVDMMLDGLREED-DPRPRLVHRIDKD 144
Query: 233 SSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGII 292
+SG+LL RT + L F + K YWA+V+G P+ G I
Sbjct: 145 TSGLLLLARTPGVAAKLAASFRGRDVKKI---------------YWAVVVGRPDPLSGEI 189
Query: 293 HAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQL 352
PL+++ G + +A Q A + Y VL SW+EL PLT R HQL
Sbjct: 190 DQPLARLGAGPGS---ITVAADRKDADAQSARSVYEVLDSAARKFSWLELSPLTGRTHQL 246
Query: 353 RVHCAEALGTPIVGDYKYG 371
RVHC E+LGTPI+GD KYG
Sbjct: 247 RVHC-ESLGTPILGDPKYG 264
>C7KJP4_ACEPA (tr|C7KJP4) Pseudouridine synthase OS=Acetobacter pasteurianus IFO
3283-32 GN=APA32_17220 PE=3 SV=1
Length = 328
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 103/199 (51%), Gaps = 20/199 (10%)
Query: 173 KYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKE 232
+ ++++V+Y+D +I LNKP L V+G + +D D D P+LVHR+DK+
Sbjct: 86 REIRKMVVYQDKHVIALNKPAGLAVQGGPGITKHVDMMLDGLREED-DPRPRLVHRIDKD 144
Query: 233 SSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGII 292
+SG+LL RT + L F + K YWA+V+G P+ G I
Sbjct: 145 TSGLLLLARTPGVAAKLAASFRGRDVKKI---------------YWAVVVGRPDPLSGEI 189
Query: 293 HAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQL 352
PL+++ G + +A Q A + Y VL SW+EL PLT R HQL
Sbjct: 190 DQPLARLGAGPGS---ITVAADRKDADAQSARSVYEVLDSAARKFSWLELSPLTGRTHQL 246
Query: 353 RVHCAEALGTPIVGDYKYG 371
RVHC E+LGTPI+GD KYG
Sbjct: 247 RVHC-ESLGTPILGDPKYG 264
>C7KHV5_ACEPA (tr|C7KHV5) Pseudouridine synthase OS=Acetobacter pasteurianus IFO
3283-26 GN=APA26_17220 PE=3 SV=1
Length = 328
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 103/199 (51%), Gaps = 20/199 (10%)
Query: 173 KYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKE 232
+ ++++V+Y+D +I LNKP L V+G + +D D D P+LVHR+DK+
Sbjct: 86 REIRKMVVYQDKHVIALNKPAGLAVQGGPGITKHVDMMLDGLREED-DPRPRLVHRIDKD 144
Query: 233 SSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGII 292
+SG+LL RT + L F + K YWA+V+G P+ G I
Sbjct: 145 TSGLLLLARTPGVAAKLAASFRGRDVKKI---------------YWAVVVGRPDPLSGEI 189
Query: 293 HAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQL 352
PL+++ G + +A Q A + Y VL SW+EL PLT R HQL
Sbjct: 190 DQPLARLGAGPGS---ITVAADRKDADAQSARSVYEVLDSAARKFSWLELSPLTGRTHQL 246
Query: 353 RVHCAEALGTPIVGDYKYG 371
RVHC E+LGTPI+GD KYG
Sbjct: 247 RVHC-ESLGTPILGDPKYG 264
>C7K8N6_ACEPA (tr|C7K8N6) Pseudouridine synthase OS=Acetobacter pasteurianus
GN=APA22_17220 PE=3 SV=1
Length = 328
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 103/199 (51%), Gaps = 20/199 (10%)
Query: 173 KYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKE 232
+ ++++V+Y+D +I LNKP L V+G + +D D D P+LVHR+DK+
Sbjct: 86 REIRKMVVYQDKHVIALNKPAGLAVQGGPGITKHVDMMLDGLREED-DPRPRLVHRIDKD 144
Query: 233 SSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGII 292
+SG+LL RT + L F + K YWA+V+G P+ G I
Sbjct: 145 TSGLLLLARTPGVAAKLAASFRGRDVKKI---------------YWAVVVGRPDPLSGEI 189
Query: 293 HAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQL 352
PL+++ G + +A Q A + Y VL SW+EL PLT R HQL
Sbjct: 190 DQPLARLGAGPGS---ITVAADRKDADAQSARSVYEVLDSAARKFSWLELSPLTGRTHQL 246
Query: 353 RVHCAEALGTPIVGDYKYG 371
RVHC E+LGTPI+GD KYG
Sbjct: 247 RVHC-ESLGTPILGDPKYG 264
>C7JYE2_ACEPA (tr|C7JYE2) Pseudouridine synthase OS=Acetobacter pasteurianus IFO
3283-07 GN=APA07_17220 PE=3 SV=1
Length = 328
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 103/199 (51%), Gaps = 20/199 (10%)
Query: 173 KYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKE 232
+ ++++V+Y+D +I LNKP L V+G + +D D D P+LVHR+DK+
Sbjct: 86 REIRKMVVYQDKHVIALNKPAGLAVQGGPGITKHVDMMLDGLREED-DPRPRLVHRIDKD 144
Query: 233 SSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGII 292
+SG+LL RT + L F + K YWA+V+G P+ G I
Sbjct: 145 TSGLLLLARTPGVAAKLAASFRGRDVKKI---------------YWAVVVGRPDPLSGEI 189
Query: 293 HAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQL 352
PL+++ G + +A Q A + Y VL SW+EL PLT R HQL
Sbjct: 190 DQPLARLGAGPGS---ITVAADRKDADAQSARSVYEVLDSAARKFSWLELSPLTGRTHQL 246
Query: 353 RVHCAEALGTPIVGDYKYG 371
RVHC E+LGTPI+GD KYG
Sbjct: 247 RVHC-ESLGTPILGDPKYG 264
>C7JP76_ACEPA (tr|C7JP76) Pseudouridine synthase OS=Acetobacter pasteurianus IFO
3283-03 GN=APA03_17220 PE=3 SV=1
Length = 328
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 103/199 (51%), Gaps = 20/199 (10%)
Query: 173 KYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKE 232
+ ++++V+Y+D +I LNKP L V+G + +D D D P+LVHR+DK+
Sbjct: 86 REIRKMVVYQDKHVIALNKPAGLAVQGGPGITKHVDMMLDGLREED-DPRPRLVHRIDKD 144
Query: 233 SSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGII 292
+SG+LL RT + L F + K YWA+V+G P+ G I
Sbjct: 145 TSGLLLLARTPGVAAKLAASFRGRDVKKI---------------YWAVVVGRPDPLSGEI 189
Query: 293 HAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQL 352
PL+++ G + +A Q A + Y VL SW+EL PLT R HQL
Sbjct: 190 DQPLARLGAGPGS---ITVAADRKDADAQSARSVYEVLDSAARKFSWLELSPLTGRTHQL 246
Query: 353 RVHCAEALGTPIVGDYKYG 371
RVHC E+LGTPI+GD KYG
Sbjct: 247 RVHC-ESLGTPILGDPKYG 264
>D8JXU8_HYPDA (tr|D8JXU8) Pseudouridine synthase OS=Hyphomicrobium denitrificans
(strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415)
GN=Hden_1495 PE=3 SV=1
Length = 327
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/248 (31%), Positives = 122/248 (49%), Gaps = 21/248 (8%)
Query: 128 RKMRPNDVMKPGARLHVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAII 187
++ + ND + GA + VP A R K+ L + + ++++++++D ++
Sbjct: 47 KRAQANDRLSAGAEIRVP---AIVREPKKLSPTGRPALGVSKGDRDAIEKMILFEDDHVL 103
Query: 188 VLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVS 247
VLNKP L V+G +D E P+LVHRLD++++G+LL +T+++ +
Sbjct: 104 VLNKPFGLAVQGGTGTKKHIDGMLEGMADRFGGERPRLVHRLDRDTTGVLLVAKTREAAA 163
Query: 248 HLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTE 307
L F ++AK+ YWALV G P +G + A L K DG +
Sbjct: 164 KLGRTFQTRSAAKT---------------YWALVKGVPKPPQGKVEAALVKASGPDG--D 206
Query: 308 RVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGD 367
RV A + A T Y V+ + +WV L+P+T R+HQLR H +G PIVGD
Sbjct: 207 RVRKARPGEQDAAMHATTHYSVVDRAAHKAAWVSLKPVTGRQHQLRAHM-HLIGHPIVGD 265
Query: 368 YKYGWFVH 375
KY VH
Sbjct: 266 NKYEGDVH 273
>A4WVH9_RHOS5 (tr|A4WVH9) Pseudouridine synthase OS=Rhodobacter sphaeroides
(strain ATCC 17025 / ATH 2.4.3) GN=Rsph17025_2505 PE=3
SV=1
Length = 346
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/216 (37%), Positives = 108/216 (50%), Gaps = 22/216 (10%)
Query: 161 PSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYD 220
P + +DE + +Q VIYKD+ IIVLNKP LP +G + Y
Sbjct: 75 PQASRVTKSDE-QMIQDCVIYKDNDIIVLNKPAGLPSQGGSGQGERHVDGLTEALKFGYK 133
Query: 221 EGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWAL 280
E PKLVHRLDK++SG+L+ RT L F + N+ K YWAL
Sbjct: 134 ERPKLVHRLDKDTSGVLVLARTDRVARALSESFRHRNTRKI---------------YWAL 178
Query: 281 VIGTPNEKEGIIHAPLSKVLLN--DGKTERVMLAHHSTIEPRQE---AVTEYRVLGPKIN 335
V G P+ K+G I L K + G+ E+++ H + + E A T++ L
Sbjct: 179 VAGVPSPKQGSIKYALMKAAGHGRGGEGEKMLCIHPAKVGDYPEAKRAQTDFFTLWFLGT 238
Query: 336 GCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKYG 371
C+W+ L P+T R HQLR H AE LG PIVGD KYG
Sbjct: 239 RCAWMALSPITGRTHQLRAHMAE-LGHPIVGDGKYG 273
>A8TZH4_9PROT (tr|A8TZH4) Pseudouridine synthase OS=alpha proteobacterium BAL199
GN=BAL199_29595 PE=3 SV=1
Length = 331
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 90/289 (31%), Positives = 135/289 (46%), Gaps = 44/289 (15%)
Query: 84 WIKYYFKGTWGSV-IESHFRKGLVQMEDLIAADSFTQKDERMKPMRKMRPNDVMKPGARL 142
W K YF T G V + R G V+++ R+++ + ++ G +
Sbjct: 21 WFKRYFP-TLGHVHLTKLLRTGQVRVDG-----------------RRVKAGERLEAGQTI 62
Query: 143 HVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLP 202
+P ++ A P G +A+ + L+RL+++ D ++ +NKP L V+G
Sbjct: 63 RIPPMDVPAASAEAVKAKPGGK--GDAETAEQLRRLILHTDRDVLAINKPAGLAVQGGSG 120
Query: 203 VHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKSS 262
+ +D +D E P+LVHRLDK++SG+LL GR+ + L F AKS+
Sbjct: 121 ITKHVDGALDGLM-FDAKERPRLVHRLDKDTSGVLLVGRSYQAARRLTEAF----RAKSA 175
Query: 263 CKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQE 322
K YWALV+G P G I + K+ G+ + L E +
Sbjct: 176 MKI-----------YWALVVGEPKPNAGSIEGAIGKLPGRAGEKMAIDL------ENGKR 218
Query: 323 AVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKYG 371
A T Y + +WV L P+T R HQLRVH AE LGTPI+GD KYG
Sbjct: 219 AFTRYVTVERLGGKVTWVALFPVTGRTHQLRVHMAE-LGTPILGDGKYG 266
>B9NL86_9RHOB (tr|B9NL86) Pseudouridine synthase OS=Rhodobacteraceae bacterium
KLH11 GN=rluC PE=3 SV=1
Length = 347
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/210 (37%), Positives = 105/210 (50%), Gaps = 30/210 (14%)
Query: 171 EIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLD 230
+ K +Q VIYKD ++ LNKP LPV+G +D + YDE P+LVHRLD
Sbjct: 85 DAKMIQSCVIYKDDQVLALNKPHGLPVQGGSGQTRHVDSLSEALR-FGYDENPRLVHRLD 143
Query: 231 KESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEG 290
K++SG+LL RT+D+ L F + N+ K YWALV G P G
Sbjct: 144 KDTSGVLLMARTRDAAKALTAAFRHRNTRKI---------------YWALVAGVPTPYLG 188
Query: 291 IIHAPLSKVLLN--DGKTERVMLAHHSTIEPRQEA-------VTEYRVLGPKINGCSWVE 341
I L K + G+ E+++ H S + A T YRV G +WV
Sbjct: 189 EIKTGLVKASGHGKQGEGEKMIALHPSEVNDTPGAKRAHTLYATLYRVAGR----AAWVA 244
Query: 342 LRPLTSRKHQLRVHCAEALGTPIVGDYKYG 371
+ P+T R HQLR H A A+G PI+GD KYG
Sbjct: 245 MEPVTGRTHQLRAHMA-AIGHPIIGDGKYG 273
>N0B298_9RHIZ (tr|N0B298) Pseudouridine synthase OS=Hyphomicrobium denitrificans
1NES1 GN=HYPDE_29723 PE=4 SV=1
Length = 326
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/292 (28%), Positives = 136/292 (46%), Gaps = 38/292 (13%)
Query: 84 WIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKPMRKMRPNDVMKPGARLH 143
W + +F + ++ R G V+++ ++ + ND + G+ +
Sbjct: 20 WFRAHFPDVGYTYLQKLLRSGQVRVDS-----------------KRAQANDRLSAGSEIR 62
Query: 144 VPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPV 203
VP A R K+ L + + ++++++Y+D ++VLNKP L V+G
Sbjct: 63 VP---AIIRQPKKVSPNGRPALGVSKGDRDAIEKMILYEDDHVLVLNKPFGLAVQGGTGT 119
Query: 204 HNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKSSC 263
+D E P+LVHRLD++++G+LL +T+++ + L +F ++AK+
Sbjct: 120 KKHIDGMLEGMADRFGGERPRLVHRLDRDTTGVLLVAKTREAAAKLGRIFQTRSAAKT-- 177
Query: 264 KAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEA 323
YWALV G P +G + A L K DG +RV A + A
Sbjct: 178 -------------YWALVKGVPKPPQGKVEAALVKASGPDG--DRVRKAKPGEQDVAMHA 222
Query: 324 VTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVH 375
T Y V+ + +WV L+P+T R+HQLR H +G PIVGD KY VH
Sbjct: 223 TTHYSVIDRAAHKAAWVSLKPVTGRQHQLRAHM-HLIGHPIVGDNKYEGDVH 273
>G8PPD8_PSEUV (tr|G8PPD8) Pseudouridine synthase OS=Pseudovibrio sp. (strain
FO-BEG1) GN=PSE_3847 PE=3 SV=1
Length = 349
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/235 (33%), Positives = 120/235 (51%), Gaps = 23/235 (9%)
Query: 136 MKPGARLHVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKL 195
++ G + +P E R +A P ++D + ++++++++DS ++VLNKP L
Sbjct: 72 LEAGQEIRIPPLGVELAADDRKNAKPRARKLVDSDR-EAIEQMMLFEDSHVMVLNKPAGL 130
Query: 196 PVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSN 255
V+G + +D + D+ P+LVHRLD+E+SGILL +T+ + L F +
Sbjct: 131 AVQGGSGLKRHVDGMLDAFTNQKGDK-PRLVHRLDRETSGILLVAKTRRAAQELTKAFRH 189
Query: 256 INSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHS 315
N+ K YWA+V G P ++G I S L D ER+ +A H
Sbjct: 190 RNTRKI---------------YWAMVAGVPKPRQGRI----STYLARDEGEERMRVARHG 230
Query: 316 TIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKY 370
E Q AV+ Y V+ SWV L+P+T R HQLR H A +G PI+GD KY
Sbjct: 231 DDEA-QHAVSLYNVVEQSGQKLSWVTLKPVTGRTHQLRAHSAH-IGHPIIGDPKY 283
>K0W3Q9_9RHIZ (tr|K0W3Q9) Pseudouridine synthase OS=Rhizobium sp. Pop5
GN=RCCGEPOP_08655 PE=3 SV=1
Length = 330
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 92/292 (31%), Positives = 138/292 (47%), Gaps = 50/292 (17%)
Query: 84 WIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKPMRKMR--PNDV---MKP 138
W K +F G ++ R G V+++ + D R++P + +R P DV +K
Sbjct: 21 WFKVHFPGLGFGPLQKLLRSGQVRVDG-----GRVKSDARVQPGQTVRVPPLDVDAKLKS 75
Query: 139 GARLHVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVK 198
G P++ + + S +D L R+V+++D +IVLNKPP L V+
Sbjct: 76 G-----PIAGKDLKHSTDFD---------------LLSRMVLHEDEKVIVLNKPPGLAVQ 115
Query: 199 GNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINS 258
G V +D S E P+LVHRLD+++SG+L+ RT+ + L F ++
Sbjct: 116 GGSGVARHIDQMLEAWTS-PKGEKPRLVHRLDRDTSGVLVIARTRGAAQKLTAAFRERDT 174
Query: 259 AKSSCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIE 318
K+ YW+LV G P + E I L K DG +R+ +A H E
Sbjct: 175 KKT---------------YWSLVRGVPRKHEDKISTWLVKEPTADG--DRMRIAKHGE-E 216
Query: 319 PRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKY 370
AV+ YRVL +W+E+ P T R HQLRVH +G PI+GD KY
Sbjct: 217 GADHAVSFYRVLETAAQNLAWLEMEPYTGRTHQLRVHALH-IGHPIIGDPKY 267
>G6XFU2_9PROT (tr|G6XFU2) Pseudouridine synthase OS=Gluconobacter morbifer G707
GN=GMO_03570 PE=3 SV=1
Length = 329
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/200 (35%), Positives = 105/200 (52%), Gaps = 20/200 (10%)
Query: 172 IKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDK 231
++ ++++VIY+D ++VL+KP L +G + +D D P+LVHR+D+
Sbjct: 83 VREIEKMVIYQDEHLLVLDKPSGLATQGGPGITKHVDMMLDGLRVEGGDR-PRLVHRIDR 141
Query: 232 ESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGI 291
++SGILL RT + L F + K+ YWA+V+G P+ GI
Sbjct: 142 DTSGILLIARTPGVAAKLAAAFRGRDVQKT---------------YWAVVVGRPSPASGI 186
Query: 292 IHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQ 351
I PL+K+ G V+ A E A +EY L SW++L PLT R HQ
Sbjct: 187 IDQPLAKI--GAGGASLVIAASRDE-EDAASAKSEYETLDAAGKKFSWLKLSPLTGRTHQ 243
Query: 352 LRVHCAEALGTPIVGDYKYG 371
LRVHC E++GTPI+GD +YG
Sbjct: 244 LRVHC-ESIGTPILGDPRYG 262
>A3VF99_9RHOB (tr|A3VF99) Pseudouridine synthase OS=Maritimibacter alkaliphilus
HTCC2654 GN=RB2654_10968 PE=3 SV=1
Length = 350
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/206 (36%), Positives = 107/206 (51%), Gaps = 22/206 (10%)
Query: 171 EIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLD 230
+ + ++ VIY+D II LNKPP LP +G +D ++ YD+ P+LVHRLD
Sbjct: 85 DAQMIRDCVIYRDDHIIALNKPPGLPTQGGSKQTRHVDGLAEVL-TFGYDDKPRLVHRLD 143
Query: 231 KESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEG 290
K++SG+LL RT+ L F + N+ K YWA+V G P ++G
Sbjct: 144 KDTSGVLLLARTRQVAKDLTDAFRHRNTRKI---------------YWAVVAGVPLPRKG 188
Query: 291 IIHAPLSKVLLNDGKTE-RVMLAHH----STIEPRQEAVTEYRVLGPKINGCSWVELRPL 345
+ L K + G+ E ML H + +E + A T+Y V+ +WV L P+
Sbjct: 189 TVKWGLVKAPGHGGQGEGEKMLCIHPSEVAKVEGAKRAETDYVVIENLAQRAAWVGLTPI 248
Query: 346 TSRKHQLRVHCAEALGTPIVGDYKYG 371
T R HQLR H AE +G PIVGD KYG
Sbjct: 249 TGRTHQLRAHMAE-MGHPIVGDGKYG 273
>B3PP13_RHIE6 (tr|B3PP13) Pseudouridine synthase OS=Rhizobium etli (strain CIAT
652) GN=rluC PE=3 SV=1
Length = 330
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 90/292 (30%), Positives = 138/292 (47%), Gaps = 50/292 (17%)
Query: 84 WIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKPMRKMR--PNDV---MKP 138
W K +F G ++ R G V+++ + D R++P + +R P DV +K
Sbjct: 21 WFKVHFPGLGFGPLQKLLRSGQVRVDG-----GRVKSDARVQPGQTVRVPPLDVDAKLKS 75
Query: 139 GARLHVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVK 198
G P++ + + S +D L R+V+++D +IVLNKPP + V+
Sbjct: 76 G-----PIAGKDLKHSSDFD---------------LLSRMVLHEDEKVIVLNKPPGIAVQ 115
Query: 199 GNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINS 258
G V +D S E P+LVHRLD+++SG+L+ RT+ + L F ++
Sbjct: 116 GGSGVARHIDQMLEAWTS-PKGEKPRLVHRLDRDTSGVLVIARTRGAAQKLTAAFRERDT 174
Query: 259 AKSSCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIE 318
K+ YWALV G P + E I L K DG +R+ +A H +
Sbjct: 175 KKT---------------YWALVKGVPRKHEDKISTWLVKEATADG--DRMRIAKHGE-D 216
Query: 319 PRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKY 370
A++ YRVL +W+E+ P T R HQLRVH +G PI+GD KY
Sbjct: 217 GADHAISFYRVLETAAQNLAWLEMEPYTGRTHQLRVHALH-IGHPIIGDPKY 267
>Q2CBL6_9RHOB (tr|Q2CBL6) Pseudouridine synthase OS=Oceanicola granulosus
HTCC2516 GN=OG2516_08321 PE=3 SV=1
Length = 348
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 91/295 (30%), Positives = 138/295 (46%), Gaps = 49/295 (16%)
Query: 84 WIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKPMRKMRPNDVMKPGARLH 143
W++ F IE RKG ++++ + + R+ P +++R + PG
Sbjct: 21 WLRARFPQLTQGRIEKMCRKGELRIDG-----GRVKSNTRIAPGQQVRVPPLPPPG---- 71
Query: 144 VPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPV 203
E R P+G P+A + + ++ V+Y+D +IVLNKPP LP +G
Sbjct: 72 ------EVR--------PAGRDEPSAQDAEMMRAAVLYRDDHLIVLNKPPGLPTQGGSRQ 117
Query: 204 HNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKSSC 263
+D ++ +E P+LVHRLDK++SGILL RT +++
Sbjct: 118 TRHVD-GLSAALTFGLEEKPRLVHRLDKDTSGILLLART-----------------RAAA 159
Query: 264 KAWNDACEATYQR--YWALVIGTPNEKEGIIHAPLSKVLLND--GKTERVMLAHHSTI-- 317
K DA + R YWA V G P+ + G + L K + G+ E++ H +
Sbjct: 160 KGLTDAFRSRETRKIYWAAVAGVPHPRMGTVKYGLVKQPGHGARGENEKMRCIHPDEVLR 219
Query: 318 -EPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKYG 371
+ AVT+Y V+ +WV L P+T R HQLR H AE LG PI GD KYG
Sbjct: 220 TPDAKRAVTDYAVIETLARRAAWVALVPVTGRTHQLRAHMAE-LGHPIAGDGKYG 273
>A6E221_9RHOB (tr|A6E221) Pseudouridine synthase OS=Roseovarius sp. TM1035
GN=RTM1035_01895 PE=3 SV=1
Length = 347
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/242 (35%), Positives = 121/242 (50%), Gaps = 24/242 (9%)
Query: 136 MKPGARLHVPVSMAETRISKRYDAIPSGTLYP-NADEIKYLQRLVIYKDSAIIVLNKPPK 194
+KP RL V S+ + D P+G L + + K +Q VIY+D II LNKPP
Sbjct: 50 VKPATRLEVGQSVRIPPLPD-TDERPTGALARISPADAKMIQSCVIYRDDHIIALNKPPG 108
Query: 195 LPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFS 254
LPV+G +D + ++ P+LVHRLDK++SG+LL RT+++ L F
Sbjct: 109 LPVQGGSKQLRHVDGLAEAL-RFGAEDKPRLVHRLDKDTSGVLLLARTREAAKGLTAAFR 167
Query: 255 NINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLND--GKTERVMLA 312
+ N+ K YWA V G P + G I L K + G+ E+++
Sbjct: 168 HRNTRKI---------------YWAAVAGVPTPRMGTIRFGLVKAPGHGAKGEGEKMLCL 212
Query: 313 HHSTIEPR---QEAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYK 369
H I+ + A T+Y V+ +W+ L P+T R HQLR H AE +G PIVGD K
Sbjct: 213 HPRDIDATPGAKPATTDYAVIEAAGARTAWMALIPVTGRTHQLRAHMAE-IGHPIVGDGK 271
Query: 370 YG 371
YG
Sbjct: 272 YG 273
>M9M9I1_GLUTH (tr|M9M9I1) Ribosomal large subunit pseudouridine synthase C
OS=Gluconobacter thailandicus NBRC 3255 GN=NBRC3255_1073
PE=4 SV=1
Length = 330
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/200 (35%), Positives = 105/200 (52%), Gaps = 20/200 (10%)
Query: 172 IKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDK 231
++ ++++VIY+D ++VL+KP L +G + +D D D P+LVHR+D+
Sbjct: 83 VREIEKMVIYQDDHLLVLDKPSGLATQGGPGITKHVDMMLDGLRKEDGDR-PRLVHRIDR 141
Query: 232 ESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGI 291
++SGILL RT + L F + K+ YWA+V+G P + GI
Sbjct: 142 DTSGILLIARTPGVAAKLAAAFRGRDVGKT---------------YWAIVVGRPAQASGI 186
Query: 292 IHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQ 351
I PL+K+ +++A E A +EY + SW+ L PLT R HQ
Sbjct: 187 IDQPLAKIGAG---GAALVVAASRGEEDAVSAKSEYETIDAAGKKFSWLALSPLTGRTHQ 243
Query: 352 LRVHCAEALGTPIVGDYKYG 371
LRVHC E+LGTPIVGD +YG
Sbjct: 244 LRVHC-ESLGTPIVGDPRYG 262
>K7SSU6_GLUOY (tr|K7SSU6) Pseudouridine synthase OS=Gluconobacter oxydans H24
GN=B932_0369 PE=3 SV=1
Length = 330
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/200 (35%), Positives = 105/200 (52%), Gaps = 20/200 (10%)
Query: 172 IKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDK 231
++ ++++VIY+D ++VL+KP L +G + +D D D P+LVHR+D+
Sbjct: 83 VREIEKMVIYQDDHLLVLDKPSGLATQGGPGITKHVDMMLDGLRKEDGDR-PRLVHRIDR 141
Query: 232 ESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGI 291
++SGILL RT + L F + K+ YWA+V+G P + GI
Sbjct: 142 DTSGILLIARTPGVAAKLAAAFRGRDVGKT---------------YWAIVVGRPAQASGI 186
Query: 292 IHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQ 351
I PL+K+ +++A E A +EY + SW+ L PLT R HQ
Sbjct: 187 IDQPLAKIGAG---GAALVVAASRGEEDAVSAKSEYETIDAAGKKFSWLALSPLTGRTHQ 243
Query: 352 LRVHCAEALGTPIVGDYKYG 371
LRVHC E+LGTPIVGD +YG
Sbjct: 244 LRVHC-ESLGTPIVGDPRYG 262
>G2IKM1_9SPHN (tr|G2IKM1) Pseudouridine synthase OS=Sphingobium sp. SYK-6
GN=SLG_04090 PE=3 SV=1
Length = 447
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 82/240 (34%), Positives = 121/240 (50%), Gaps = 25/240 (10%)
Query: 132 PNDVMKPGARLHVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNK 191
P D ++ G L VP E ++ P + D++ + + LVI++D+ +V+NK
Sbjct: 60 PGDRIEEGQVLRVPP--LEAAPDQKAGRTPRARPVLSEDQMAFAESLVIHRDAQALVINK 117
Query: 192 PPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQW 251
PP L +G H +D ++ D+ P+LVHRLDK++SG LL RT + +
Sbjct: 118 PPGLATQGGTKTHEHVDGLLDALM-FERDDRPRLVHRLDKDTSGALLLARTARAAAQFAK 176
Query: 252 LFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVML 311
FS+ + K YWA+V+G P+ +G+I PL+K G+
Sbjct: 177 SFSSRTARKV---------------YWAIVMGVPDVADGVIDLPLAKQPGTGGEK----- 216
Query: 312 AHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKYG 371
H E A + YR++ N +WVEL+P T R HQLRVH A A+G PIVGD KYG
Sbjct: 217 -MHVDEENGMPARSRYRIIERAGNRAAWVELQPYTGRTHQLRVHMA-AIGHPIVGDGKYG 274
>F2ABP2_RHIET (tr|F2ABP2) Pseudouridine synthase OS=Rhizobium etli CNPAF512
GN=RHECNPAF_35009 PE=3 SV=1
Length = 330
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 89/292 (30%), Positives = 138/292 (47%), Gaps = 50/292 (17%)
Query: 84 WIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKPMRKMR--PNDV---MKP 138
W K +F G ++ R G V+++ + D R++P + +R P DV +K
Sbjct: 21 WFKVHFPGLGFGPLQKLLRSGQVRVDG-----GRVKSDARVQPGQTVRVPPLDVDAKLKS 75
Query: 139 GARLHVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVK 198
G P++ G ++ + + L R+V+++D +IVLNKPP + V+
Sbjct: 76 G-----PIA---------------GKDLKHSSDFELLSRMVLHEDDKVIVLNKPPGIAVQ 115
Query: 199 GNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINS 258
G V +D S E P+LVHRLD+++SG+L+ RT+ + L F ++
Sbjct: 116 GGSGVARHIDQMLEAWTS-PKGEKPRLVHRLDRDTSGVLVIARTRGAAQKLTAAFRERDT 174
Query: 259 AKSSCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIE 318
K+ YWALV G P + E I L K DG +R+ +A H +
Sbjct: 175 KKT---------------YWALVKGVPRKHEDKISTWLVKEATADG--DRMRIAKHGE-D 216
Query: 319 PRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKY 370
A++ YRVL +W+E+ P T R HQLRVH +G PI+GD KY
Sbjct: 217 GADHAISFYRVLETAAQNLAWIEMEPYTGRTHQLRVHALH-IGHPIIGDPKY 267
>D0CUP1_9RHOB (tr|D0CUP1) Pseudouridine synthase OS=Silicibacter lacuscaerulensis
ITI-1157 GN=SL1157_1605 PE=3 SV=1
Length = 347
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 76/209 (36%), Positives = 107/209 (51%), Gaps = 28/209 (13%)
Query: 171 EIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLD 230
+ K +Q VIY+D ++ LNKP LPV+G +D + YDE P+LVHRLD
Sbjct: 85 DAKMIQSCVIYRDDHVLALNKPHGLPVQGGSGQARHVDGLAEAL-RFGYDENPRLVHRLD 143
Query: 231 KESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNE--- 287
K++SG+LL RT+++ L F + N+ K YWALV G P
Sbjct: 144 KDTSGVLLMARTREAAKGLTAAFRHRNTRKI---------------YWALVAGVPTPYLG 188
Query: 288 --KEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPR---QEAVTEYRVLGPKINGCSWVEL 342
K G++ AP G+ E+++ H + I+ + A T Y L + SWV +
Sbjct: 189 EIKTGLVKAPGHG---KQGEGEKMIAVHLNEIDSTPGAKRAHTLYATLFRVASRASWVAM 245
Query: 343 RPLTSRKHQLRVHCAEALGTPIVGDYKYG 371
P+T R HQLR H A A+G PI+GD KYG
Sbjct: 246 EPVTGRTHQLRAHMA-AIGHPIIGDGKYG 273
>B6R0Y5_9RHOB (tr|B6R0Y5) Pseudouridine synthase OS=Pseudovibrio sp. JE062
GN=rluC PE=3 SV=1
Length = 349
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 120/235 (51%), Gaps = 23/235 (9%)
Query: 136 MKPGARLHVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKL 195
++ G + +P E R +A P ++D + ++++++++DS ++VLNKP L
Sbjct: 72 LEAGQEIRIPPLGVELAADDRKNAKPRARKLVDSDR-EAIEQMMLFEDSHVMVLNKPAGL 130
Query: 196 PVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSN 255
V+G + +D + D+ P+LVHRLD+E+SGILL +T+ + L F +
Sbjct: 131 AVQGGSGLKRHVDGMLDAFTNQKGDK-PRLVHRLDRETSGILLVAKTRRAAQELTKAFRH 189
Query: 256 INSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHS 315
N+ K YWA+V G P ++G I S L D ER+ +A H
Sbjct: 190 RNTRKI---------------YWAMVAGVPKPRQGRI----STYLARDEGEERMRVARHG 230
Query: 316 TIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKY 370
E Q AV+ Y V+ +WV L+P+T R HQLR H A +G PI+GD KY
Sbjct: 231 DDEA-QHAVSLYNVVEQSGQKLAWVTLKPVTGRTHQLRAHSAH-IGHPIIGDPKY 283
>C6AYR2_RHILS (tr|C6AYR2) Pseudouridine synthase OS=Rhizobium leguminosarum bv.
trifolii (strain WSM1325) GN=Rleg_2086 PE=3 SV=1
Length = 330
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 88/289 (30%), Positives = 135/289 (46%), Gaps = 44/289 (15%)
Query: 84 WIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKPMRKMR--PNDVMKPGAR 141
W K +F G ++ R G V+++ + D R++P + +R P DV
Sbjct: 21 WFKVHFPGLGFGPLQKLLRSGQVRVDG-----GRVKSDARVQPGQTVRVPPMDV------ 69
Query: 142 LHVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNL 201
+K +G ++ + + L R+V+++D +IVLNKPP L V+G
Sbjct: 70 -----------DAKLKSGPIAGKDLKHSSDFQLLSRMVLHEDDKVIVLNKPPGLAVQGGS 118
Query: 202 PVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKS 261
V +D S E P+LVHRLD+++SG+L+ RT+ + L F ++ K+
Sbjct: 119 GVARHIDQMLEAWTS-PKGEKPRLVHRLDRDTSGVLVIARTRGAAQKLTAAFRERDTKKT 177
Query: 262 SCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQ 321
YWALV G P + E I L K DG +R+ +A H +
Sbjct: 178 ---------------YWALVKGVPRKHEDKISTWLVKEPTADG--DRMRIAKHGE-DGAD 219
Query: 322 EAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKY 370
A++ YRVL +W+E+ P T R HQLRVH +G PI+GD KY
Sbjct: 220 HAISFYRVLETAAQNLAWLEMEPYTGRTHQLRVHALH-IGHPIIGDPKY 267
>F2IUX2_POLGS (tr|F2IUX2) Pseudouridine synthase OS=Polymorphum gilvum (strain
LMG 25793 / CGMCC 1.9160 / SL003B-26A1) GN=rluD PE=3
SV=1
Length = 334
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 72/202 (35%), Positives = 106/202 (52%), Gaps = 22/202 (10%)
Query: 169 ADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHR 228
AD+ K ++ +++Y+D ++VLNKP L V+G + +D + E P+LVHR
Sbjct: 88 ADDRKAVEDMILYEDDQVMVLNKPAGLAVQGGSGLSRHLDGMLDAFTNKK-GEKPRLVHR 146
Query: 229 LDKESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEK 288
LD+E+SG+LL +T+ + L F +T + YWAL+ G P +
Sbjct: 147 LDRETSGVLLVAKTRKAAQELTRAFRQ---------------RSTRKIYWALLAGVPKPR 191
Query: 289 EGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSR 348
+G I S L D +E++ +A H E Q AV+ Y V+ +WV LRP+T R
Sbjct: 192 QGRI----STYLARDEGSEKMKVARHGDDEA-QHAVSLYSVVEQSAQKLAWVSLRPVTGR 246
Query: 349 KHQLRVHCAEALGTPIVGDYKY 370
HQLR H A +G PIVGD KY
Sbjct: 247 THQLRAHAAH-IGHPIVGDDKY 267
>A7HWU2_PARL1 (tr|A7HWU2) Pseudouridine synthase OS=Parvibaculum lavamentivorans
(strain DS-1 / DSM 13023 / NCIMB 13966) GN=Plav_2767
PE=3 SV=1
Length = 330
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 78/223 (34%), Positives = 113/223 (50%), Gaps = 20/223 (8%)
Query: 161 PSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYD 220
P P+ D+ + L+ VIYKD +++VLNKP L V+G +D +D
Sbjct: 76 PKAVHAPSVDDAEMLRANVIYKDKSVLVLNKPVGLAVQGGTKTERHLDGMLDALI-FDAK 134
Query: 221 EGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWAL 280
E P+LVHRLD+++SG+L+ RT + + L F ++ K YWAL
Sbjct: 135 ERPRLVHRLDRDTSGVLVLARTAKAAAALAQAFKQKDAQKI---------------YWAL 179
Query: 281 VIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWV 340
V+G P ++G I LSK + ERV A E ++AVT + + + +WV
Sbjct: 180 VVGVPVPRQGTIDLALSK--QGGPRAERVFAAKRGD-EGARDAVTHFSTVSTAAHTLAWV 236
Query: 341 ELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVHNRWKQMPR 383
PLT R HQ+R H A A+ TPIVGD KYG + ++PR
Sbjct: 237 AFMPLTGRTHQIRAHAA-AIETPIVGDGKYGGVNAHPGGEIPR 278
>I5BUQ9_9RHIZ (tr|I5BUQ9) Pseudouridine synthase OS=Nitratireductor aquibiodomus
RA22 GN=A33O_16120 PE=3 SV=1
Length = 328
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 88/290 (30%), Positives = 137/290 (47%), Gaps = 47/290 (16%)
Query: 84 WIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKPMRKMR--PNDVMKPGAR 141
W K +F G ++ R G +++ + S + D R++P + +R P DV + G
Sbjct: 21 WFKAHFPGLGFGHLQKLLRSGQIRV-----SGSRAKADTRLEPGQMVRVPPLDVDRKG-- 73
Query: 142 LHVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNL 201
D + N + + L ++++Y+D + V NKP L V+G
Sbjct: 74 ----------------DGQATAHSLRNTGDGEALMQMLLYEDPKVFVFNKPAGLAVQGGS 117
Query: 202 PVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKS 261
V+ +D + E P+LVHRLD+++SG+L+ RT+ + L F ++ K+
Sbjct: 118 GVNRHVDGMLEALRNKK-GEKPRLVHRLDRDTSGVLVVARTRQAAMRLAEAFRARDTKKT 176
Query: 262 SCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQ 321
YWALV G PN E I L+K DG +R+ + H EP
Sbjct: 177 ---------------YWALVKGVPNRDEARISTWLAKEQTPDG--DRMRVVKHG--EPDS 217
Query: 322 E-AVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKY 370
+ AV+ YRV+ + SW+E+ P T R HQLRVH A +G PI+GD KY
Sbjct: 218 DHAVSNYRVVERAGSALSWLEMEPYTGRTHQLRVHAA-YIGCPIIGDPKY 266
>Q1MG68_RHIL3 (tr|Q1MG68) Pseudouridine synthase OS=Rhizobium leguminosarum bv.
viciae (strain 3841) GN=rluC PE=3 SV=1
Length = 330
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 88/289 (30%), Positives = 135/289 (46%), Gaps = 44/289 (15%)
Query: 84 WIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKPMRKMR--PNDVMKPGAR 141
W K +F G ++ R G V+++ + D R++P + +R P DV
Sbjct: 21 WFKVHFPGLGFGPLQKLLRSGQVRVDG-----GRVKSDARVQPGQTVRVPPMDV------ 69
Query: 142 LHVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNL 201
+K +G ++ + + L R+V+++D +IVLNKPP L V+G
Sbjct: 70 -----------DAKLKSGPIAGKDLKHSTDFELLSRMVLHEDEKVIVLNKPPGLAVQGGS 118
Query: 202 PVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKS 261
V +D S E P+LVHRLD+++SG+L+ RT+ + L F ++ K+
Sbjct: 119 GVARHIDQMLEAWTS-PKGEKPRLVHRLDRDTSGVLVIARTRGAAQKLTAAFRERDTKKT 177
Query: 262 SCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQ 321
YWALV G P + E I L K DG +R+ +A H +
Sbjct: 178 ---------------YWALVKGVPRKHEDKISTWLVKEPTADG--DRMRIAKHGE-DGAD 219
Query: 322 EAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKY 370
A++ YRVL +W+E+ P T R HQLRVH +G PI+GD KY
Sbjct: 220 HAISFYRVLETAAQNLAWLEMEPYTGRTHQLRVHALH-IGHPIIGDPKY 267
>J6DQG0_9RHIZ (tr|J6DQG0) Pseudouridine synthase OS=Rhizobium sp. CCGE 510
GN=RCCGE510_09105 PE=3 SV=1
Length = 329
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 88/289 (30%), Positives = 137/289 (47%), Gaps = 45/289 (15%)
Query: 84 WIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKPMRKMR--PNDVMKPGAR 141
W K +F G ++ R G V+++ + D R++P + +R P DV A+
Sbjct: 21 WFKVHFPGLGFGPLQKLLRSGQVRVDG-----GRVKSDARVQPGQTVRVPPLDV---DAK 72
Query: 142 LHVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNL 201
P++ G ++ + + L R+V+++D +IVLNKPP + V+G
Sbjct: 73 KSGPIA---------------GKDLKHSSDFELLSRMVLHEDDKVIVLNKPPGIAVQGGS 117
Query: 202 PVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKS 261
V +D S E P+LVHRLD+++SG+L+ RT+ + L F ++ K+
Sbjct: 118 GVARHIDQMLEAWTS-PRGEKPRLVHRLDRDTSGVLVIARTRGAAQKLTAAFRERDTKKT 176
Query: 262 SCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQ 321
YWALV G P + E I L K DG +R+ +A H +
Sbjct: 177 ---------------YWALVKGVPRKHEDKISTWLVKEPTADG--DRMRIARHGE-DGAD 218
Query: 322 EAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKY 370
A++ YRVL +W+E+ P T R HQLRVH +G PI+GD KY
Sbjct: 219 HAISFYRVLETAAQNLAWLEMEPYTGRTHQLRVHALH-IGHPIIGDPKY 266
>L1KA22_9RHOB (tr|L1KA22) Pseudouridine synthase OS=Rhodobacter sp. AKP1
GN=D516_1133 PE=3 SV=1
Length = 349
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 80/216 (37%), Positives = 109/216 (50%), Gaps = 22/216 (10%)
Query: 161 PSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYD 220
P + +DE + +Q VIY+D+ IIVLNKP LP +G + Y
Sbjct: 78 PQASRVTKSDE-QMIQDCVIYRDNDIIVLNKPAGLPSQGGSGQGERHVDGLTEALKFGYK 136
Query: 221 EGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWAL 280
E PKLVHRLDK++SG+L+ RT L F + N+ K YWAL
Sbjct: 137 ERPKLVHRLDKDTSGVLVLARTDRVARALSESFRHRNTRKI---------------YWAL 181
Query: 281 VIGTPNEKEGIIHAPLSKVLLN--DGKTERVMLAHHSTIEPRQE---AVTEYRVLGPKIN 335
V G P+ K+G I L K + G+ E+++ H + + E A T++ L +
Sbjct: 182 VAGVPSPKQGSIKYALMKAPGHGRGGEGEKMLCIHPAKVGDYPEAKRAQTDFFTLWFLGS 241
Query: 336 GCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKYG 371
C+W+ L P+T R HQLR H AE LG PIVGD KYG
Sbjct: 242 RCAWMALSPITGRTHQLRAHMAE-LGHPIVGDGKYG 276
>B9KLC1_RHOSK (tr|B9KLC1) Pseudouridine synthase OS=Rhodobacter sphaeroides
(strain KD131 / KCTC 12085) GN=RSKD131_0044 PE=3 SV=1
Length = 343
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 80/216 (37%), Positives = 109/216 (50%), Gaps = 22/216 (10%)
Query: 161 PSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYD 220
P + +DE + +Q VIY+D+ IIVLNKP LP +G + Y
Sbjct: 72 PQASRVTKSDE-QMIQDCVIYRDNDIIVLNKPAGLPSQGGSGQGERHVDGLTEALKFGYK 130
Query: 221 EGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWAL 280
E PKLVHRLDK++SG+L+ RT L F + N+ K YWAL
Sbjct: 131 ERPKLVHRLDKDTSGVLVLARTDRVARALSESFRHRNTRKI---------------YWAL 175
Query: 281 VIGTPNEKEGIIHAPLSKVLLN--DGKTERVMLAHHSTIEPRQE---AVTEYRVLGPKIN 335
V G P+ K+G I L K + G+ E+++ H + + E A T++ L +
Sbjct: 176 VAGVPSPKQGSIKYALMKAPGHGRGGEGEKMLCIHPAKVGDYPEAKRAQTDFFTLWFLGS 235
Query: 336 GCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKYG 371
C+W+ L P+T R HQLR H AE LG PIVGD KYG
Sbjct: 236 RCAWMALSPITGRTHQLRAHMAE-LGHPIVGDGKYG 270
>Q3J5P2_RHOS4 (tr|Q3J5P2) Pseudouridine synthase OS=Rhodobacter sphaeroides
(strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158)
GN=RHOS4_03240 PE=3 SV=1
Length = 346
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 80/216 (37%), Positives = 109/216 (50%), Gaps = 22/216 (10%)
Query: 161 PSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYD 220
P + +DE + +Q VIY+D+ IIVLNKP LP +G + Y
Sbjct: 75 PQASRVTKSDE-QMIQDCVIYRDNDIIVLNKPAGLPSQGGSGQGERHVDGLTEALKFGYK 133
Query: 221 EGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWAL 280
E PKLVHRLDK++SG+L+ RT L F + N+ K YWAL
Sbjct: 134 ERPKLVHRLDKDTSGVLVLARTDRVARALSESFRHRNTRKI---------------YWAL 178
Query: 281 VIGTPNEKEGIIHAPLSKVLLN--DGKTERVMLAHHSTIEPRQE---AVTEYRVLGPKIN 335
V G P+ K+G I L K + G+ E+++ H + + E A T++ L +
Sbjct: 179 VAGVPSPKQGSIKYALMKAPGHGRGGEGEKMLCIHPAKVGDYPEAKRAQTDFFTLWFLGS 238
Query: 336 GCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKYG 371
C+W+ L P+T R HQLR H AE LG PIVGD KYG
Sbjct: 239 RCAWMALSPITGRTHQLRAHMAE-LGHPIVGDGKYG 273
>F5M4H2_RHOSH (tr|F5M4H2) Pseudouridine synthase OS=Rhodobacter sphaeroides WS8N
GN=RSWS8N_13955 PE=3 SV=1
Length = 346
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 80/216 (37%), Positives = 109/216 (50%), Gaps = 22/216 (10%)
Query: 161 PSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYD 220
P + +DE + +Q VIY+D+ IIVLNKP LP +G + Y
Sbjct: 75 PQASRVTKSDE-QMIQDCVIYRDNDIIVLNKPAGLPSQGGSGQGERHVDGLTEALKFGYK 133
Query: 221 EGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWAL 280
E PKLVHRLDK++SG+L+ RT L F + N+ K YWAL
Sbjct: 134 ERPKLVHRLDKDTSGVLVLARTDRVARALSESFRHRNTRKI---------------YWAL 178
Query: 281 VIGTPNEKEGIIHAPLSKVLLN--DGKTERVMLAHHSTIEPRQE---AVTEYRVLGPKIN 335
V G P+ K+G I L K + G+ E+++ H + + E A T++ L +
Sbjct: 179 VAGVPSPKQGSIKYALMKAPGHGRGGEGEKMLCIHPAKVGDYPEAKRAQTDFFTLWFLGS 238
Query: 336 GCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKYG 371
C+W+ L P+T R HQLR H AE LG PIVGD KYG
Sbjct: 239 RCAWMALSPITGRTHQLRAHMAE-LGHPIVGDGKYG 273
>I9N9T6_RHILT (tr|I9N9T6) Pseudouridine synthase OS=Rhizobium leguminosarum bv.
trifolii WU95 GN=Rleg8DRAFT_3319 PE=3 SV=1
Length = 330
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 88/289 (30%), Positives = 135/289 (46%), Gaps = 44/289 (15%)
Query: 84 WIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKPMRKMR--PNDVMKPGAR 141
W K +F G ++ R G V+++ + D R++P + +R P DV
Sbjct: 21 WFKVHFPGLGFGPLQKLLRSGQVRVDG-----GRVKSDARVQPGQTVRVPPMDV------ 69
Query: 142 LHVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNL 201
+K +G ++ + + L R+V+++D +IVLNKPP L V+G
Sbjct: 70 -----------DAKLKSGPIAGKDLKHSTDFQLLSRMVLHEDEKVIVLNKPPGLAVQGGS 118
Query: 202 PVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKS 261
V +D S E P+LVHRLD+++SG+L+ RT+ + L F ++ K+
Sbjct: 119 GVARHIDQMLEAWTS-PKGEKPRLVHRLDRDTSGVLVIARTRGAAQKLTAAFRERDTKKT 177
Query: 262 SCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQ 321
YWALV G P + E I L K DG +R+ +A H +
Sbjct: 178 ---------------YWALVKGVPRKHEDKISTWLVKEPTVDG--DRMRIAKHGE-DGAD 219
Query: 322 EAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKY 370
A++ YRVL +W+E+ P T R HQLRVH +G PI+GD KY
Sbjct: 220 HAISFYRVLETAAQNLAWLEMEPYTGRTHQLRVHALH-IGHPIIGDPKY 267
>N9VZD3_9SPHN (tr|N9VZD3) Pseudouridine synthase RluD OS=Sphingopyxis sp. MC1
GN=EBMC1_13753 PE=4 SV=1
Length = 412
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 74/201 (36%), Positives = 106/201 (52%), Gaps = 24/201 (11%)
Query: 171 EIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLD 230
++ + +VI++D + +VL+KPP L +G + +D D PKLVHRLD
Sbjct: 85 DVALAEAMVIHRDKSALVLDKPPGLATQGGTKTDSHVDGLLGALQG-DAAVRPKLVHRLD 143
Query: 231 KESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEG 290
K++SG LL RT + + FSN ++ K+ YWA+V+G P+ +G
Sbjct: 144 KDTSGALLVARTPRAATWFAKAFSNRSARKT---------------YWAIVVGVPDIAQG 188
Query: 291 IIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKH 350
I PL+K + G+ V E + + YRV+ N +WVEL+PLT R H
Sbjct: 189 EIDLPLAKQPGSGGEKMHV-------DEKGLPSKSRYRVIERAGNSAAWVELQPLTGRTH 241
Query: 351 QLRVHCAEALGTPIVGDYKYG 371
QLRVH A A+G PIVGD KYG
Sbjct: 242 QLRVHMA-AIGHPIVGDGKYG 261
>R6ISM3_9PROT (tr|R6ISM3) Pseudouridine synthase OS=Azospirillum sp. CAG:239
GN=BN554_01670 PE=4 SV=1
Length = 311
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 102/197 (51%), Gaps = 28/197 (14%)
Query: 174 YLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKES 233
++Q L++YKD I+VLNKP L V+G +D ++ +E PKLVHR+DK++
Sbjct: 87 FIQSLLLYKDDNILVLNKPSGLAVQGGSKTTRHVDGMLDAL-TFGTEERPKLVHRIDKDT 145
Query: 234 SGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGIIH 293
SG+L+ R + L F K+ Y AL +G PN +EG+I
Sbjct: 146 SGLLVLARNRKYADLLTRAFREHTLPKT---------------YLALTVGCPNPEEGVIK 190
Query: 294 APLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQLR 353
APL K ER +++ E + AVTEYRVL + + VE RPLT R HQ+R
Sbjct: 191 APLEKA------GERSLIS-----EGGKPAVTEYRVLDSAADRFALVEARPLTGRTHQIR 239
Query: 354 VHCAEALGTPIVGDYKY 370
H E LG PI GD +Y
Sbjct: 240 AHL-EYLGMPIAGDDRY 255
>L0NE95_RHISP (tr|L0NE95) Pseudouridine synthase OS=Rhizobium sp. GN=NT26_1719
PE=3 SV=1
Length = 329
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 90/289 (31%), Positives = 135/289 (46%), Gaps = 45/289 (15%)
Query: 84 WIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKPMRKMR--PNDVMKPGAR 141
W K ++ G ++ R G V+++ + D R++P + +R P DV A
Sbjct: 21 WFKVHYPGLGFGALQKLLRSGQVRVDG-----GRVKSDARVQPGQTVRVPPLDVDTKKAG 75
Query: 142 LHVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNL 201
P++ + + S Y+ LQR+V+++D +IVLNKP L V+G
Sbjct: 76 ---PIAGKDLKHSSDYE---------------LLQRMVLHEDDKVIVLNKPAGLAVQGGS 117
Query: 202 PVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKS 261
V +D S E P+LVHRLD+++SG+L+ RT+ + L F ++ K+
Sbjct: 118 GVTRHIDQMLDAWTS-PKGEKPRLVHRLDRDTSGVLVIARTRGAAQKLTAAFRERDTKKT 176
Query: 262 SCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQ 321
YWALV G P + E I L K DG +R+ +A H
Sbjct: 177 ---------------YWALVKGVPRKHEDKISTWLVKEQTPDG--DRMRIAKHGEAGA-D 218
Query: 322 EAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKY 370
AV+ YRVL +W+E+ P T R HQLRVH +G PI+GD KY
Sbjct: 219 HAVSFYRVLETAAQTMAWLEMEPYTGRTHQLRVHALH-IGHPIIGDPKY 266
>Q5FQE0_GLUOX (tr|Q5FQE0) Pseudouridine synthase OS=Gluconobacter oxydans (strain
621H) GN=GOX1665 PE=3 SV=1
Length = 335
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 71/199 (35%), Positives = 105/199 (52%), Gaps = 20/199 (10%)
Query: 173 KYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKE 232
+ ++++VIY+D ++VL+KP L +G + +D + D P+LVHR+D++
Sbjct: 84 REIRKMVIYEDEHLLVLDKPSGLATQGGPGITKHVDMMLDGLRTEGGDR-PRLVHRIDRD 142
Query: 233 SSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGII 292
+SGILL RT + L F + K+ YWA+V+G P+ + GII
Sbjct: 143 TSGILLIARTPGVAAKLAAAFRGRDVEKT---------------YWAVVVGRPSPESGII 187
Query: 293 HAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQL 352
PL+K+ G V+ A E A TEY L SW++L PLT R HQL
Sbjct: 188 DQPLAKI--GAGGAALVIAASRDE-EDAASAKTEYETLDAAGKKLSWLKLSPLTGRTHQL 244
Query: 353 RVHCAEALGTPIVGDYKYG 371
RVH E++GTPI+GD +YG
Sbjct: 245 RVHT-ESIGTPILGDPRYG 262
>B5ZQP1_RHILW (tr|B5ZQP1) Pseudouridine synthase OS=Rhizobium leguminosarum bv.
trifolii (strain WSM2304) GN=Rleg2_1884 PE=3 SV=1
Length = 329
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 87/289 (30%), Positives = 137/289 (47%), Gaps = 45/289 (15%)
Query: 84 WIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKPMRKMR--PNDVMKPGAR 141
W K +F G ++ R G V+++ + D R++P + +R P DV A+
Sbjct: 21 WFKVHFPGLGFGPLQKLLRSGQVRVDG-----GRVKSDARVQPGQTVRVPPLDV---DAK 72
Query: 142 LHVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNL 201
P++ G ++ + + L R+V+++D +IVLNKPP + V+G
Sbjct: 73 KSGPIA---------------GKDLKHSSDFELLSRMVLHEDDKVIVLNKPPGIAVQGGS 117
Query: 202 PVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKS 261
V +D S E P+LVHRLD+++SG+L+ RT+ + L F ++ K+
Sbjct: 118 GVARHIDQMLEAWTS-PKGEKPRLVHRLDRDTSGVLVIARTRGAAQKLTAAFRERDTKKT 176
Query: 262 SCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQ 321
YWALV G P + E I L K DG +R+ +A H +
Sbjct: 177 ---------------YWALVKGVPRKHEDKISTWLVKEPTADG--DRMRIAKHGE-DGAD 218
Query: 322 EAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKY 370
A++ YRV+ +W+E+ P T R HQLRVH +G PI+GD KY
Sbjct: 219 HAISFYRVIETAAQNLAWLEMEPYTGRTHQLRVHALH-IGHPIIGDPKY 266
>I9N768_RHILT (tr|I9N768) Pseudouridine synthase OS=Rhizobium leguminosarum bv.
trifolii WSM597 GN=Rleg9DRAFT_1329 PE=3 SV=1
Length = 329
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 87/289 (30%), Positives = 137/289 (47%), Gaps = 45/289 (15%)
Query: 84 WIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKPMRKMR--PNDVMKPGAR 141
W K +F G ++ R G V+++ + D R++P + +R P DV A+
Sbjct: 21 WFKVHFPGLGFGPLQKLLRSGQVRVDG-----GRVKSDARVQPGQTVRVPPLDV---DAK 72
Query: 142 LHVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNL 201
P++ G ++ + + L R+V+++D +IVLNKPP + V+G
Sbjct: 73 KSGPIA---------------GKDLKHSSDFELLSRMVLHEDDKVIVLNKPPGIAVQGGS 117
Query: 202 PVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKS 261
V +D S E P+LVHRLD+++SG+L+ RT+ + L F ++ K+
Sbjct: 118 GVARHIDQMLEAWTS-PKGEKPRLVHRLDRDTSGVLVIARTRGAAQKLTAAFRERDTKKT 176
Query: 262 SCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQ 321
YWALV G P + E I L K DG +R+ +A H +
Sbjct: 177 ---------------YWALVKGVPRKHEDKISTWLVKEPTADG--DRMRIAKHGE-DGAD 218
Query: 322 EAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKY 370
A++ YRV+ +W+E+ P T R HQLRVH +G PI+GD KY
Sbjct: 219 HAISFYRVIETAAQNLAWLEMEPYTGRTHQLRVHALH-IGHPIIGDPKY 266
>Q0G6Y2_9RHIZ (tr|Q0G6Y2) Pseudouridine synthase OS=Fulvimarina pelagi HTCC2506
GN=FP2506_07071 PE=3 SV=1
Length = 328
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 92/295 (31%), Positives = 141/295 (47%), Gaps = 45/295 (15%)
Query: 84 WIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKPMRKMRPNDVMKPGARLH 143
W K ++ G ++ R G ++++ A + D R+ P G +
Sbjct: 21 WFKLHYPGLAFGQLQKLLRSGQIRVDGGRA-----KSDTRVAP------------GQMVR 63
Query: 144 VPVSMAETRISKRYDAIPSGTL--YPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNL 201
VP +++ S + + + T+ P+ D L ++VIY+D +IV NKP L V+G
Sbjct: 64 VPPLATDSKTSTNH-PLTANTIKGRPDGD---VLSQMVIYEDEKVIVFNKPAGLAVQGGS 119
Query: 202 PVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKS 261
V +D + E P+LVHRLD+++SGIL+ RT+ + + L F ++ K
Sbjct: 120 GVARHVDDMLEAWRNKK-GEKPRLVHRLDRDTSGILVVARTRGAATALTKAFRERDTKKL 178
Query: 262 SCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQ 321
YWA+V G P +KEG I L K DG +R+ +A H E
Sbjct: 179 ---------------YWAVVKGVPAKKEGRISTYLKKEQTPDG--DRMRIARHGD-EGAD 220
Query: 322 EAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVHN 376
A++ YRV+ +W+EL P T R HQLRVH A +G PI+GD KY F H+
Sbjct: 221 HALSHYRVIDQVAQNFAWLELEPHTGRTHQLRVHAAH-IGHPILGDPKY--FEHD 272
>K2AEW3_9BACT (tr|K2AEW3) Pseudouridine synthase OS=uncultured bacterium
GN=ACD_54C00808G0002 PE=3 SV=1
Length = 346
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 88/248 (35%), Positives = 123/248 (49%), Gaps = 29/248 (11%)
Query: 129 KMRPNDVMKPGARLHVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIV 188
+ + +D + PG + VP E+ + R S ADE K +Q V++KD II+
Sbjct: 49 RCKASDRVIPGQTIRVPPLPDESAPAPRRAGSISA-----ADE-KMIQNAVLWKDEHIII 102
Query: 189 LNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSH 248
LNKPP LP +G + + Y E PKLVHRLDK++SG+L+ RT D V+
Sbjct: 103 LNKPPGLPSQGGSGQGDRHVDGLCEALKFGYKEKPKLVHRLDKDTSGLLMLART-DRVA- 160
Query: 249 LQWLFSNINSAKSSCKAWNDACEATYQR--YWALVIGTPNEKEGIIHAPLSKVLLNDGKT 306
+A ++A R YWA V G P+ ++G I L K G
Sbjct: 161 ---------------RALSEALRHRLTRKIYWAAVAGVPHPRKGSIKYGLMKAGGGRGGD 205
Query: 307 ERVMLAHHSTIEPRQE---AVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTP 363
E+++ H + + E A T+Y VL N SW+ L P+T R HQLR H AE +G P
Sbjct: 206 EKMICVHPAKMADFPEAKRAQTDYFVLWFLGNRLSWMALEPVTGRTHQLRAHMAE-MGHP 264
Query: 364 IVGDYKYG 371
I+GD KYG
Sbjct: 265 IIGDGKYG 272
>J0JQP2_RHILV (tr|J0JQP2) Pseudouridine synthase OS=Rhizobium leguminosarum bv.
viciae WSM1455 GN=Rleg5DRAFT_2267 PE=3 SV=1
Length = 330
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 89/292 (30%), Positives = 138/292 (47%), Gaps = 50/292 (17%)
Query: 84 WIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKPMRKMR--PNDV---MKP 138
W K +F G ++ R G V+++ + D R++P + +R P DV +K
Sbjct: 21 WFKVHFPGLGFGPLQKLLRSGQVRVDG-----GRVKSDARVQPGQTVRVPPLDVDAKLKS 75
Query: 139 GARLHVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVK 198
G P++ G ++ + + L R+V+++D +IVLNKPP + V+
Sbjct: 76 G-----PIA---------------GRDLKHSSDFELLSRMVLHEDDKVIVLNKPPGIAVQ 115
Query: 199 GNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINS 258
G V +D S E P+LVHRLD+++SG+L+ RT+ + L F ++
Sbjct: 116 GGSGVARHIDQMLEAWTS-PKGEKPRLVHRLDRDTSGVLVIARTRGAAQKLTAAFRERDT 174
Query: 259 AKSSCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIE 318
K+ YWALV G P + E I L K DG +R+ +A H +
Sbjct: 175 KKT---------------YWALVKGVPRKHEDKISTWLVKEPTADG--DRMRIAKHGE-D 216
Query: 319 PRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKY 370
A++ YRVL +W+E+ P T R HQLRVH +G PI+GD KY
Sbjct: 217 GADHAISFYRVLETAAQNLAWLEMEPYTGRTHQLRVHALH-IGHPIIGDPKY 267
>J2KV74_9RHIZ (tr|J2KV74) Pseudouridine synthase OS=Rhizobium sp. CF142
GN=PMI11_06662 PE=3 SV=1
Length = 330
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 88/289 (30%), Positives = 135/289 (46%), Gaps = 44/289 (15%)
Query: 84 WIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKPMRKMR--PNDVMKPGAR 141
W K ++ G ++ R G V+++ + D R++P + +R P DV
Sbjct: 21 WFKIHYPGLGFGPLQKLLRSGQVRVDG-----GRVKSDARVQPGQMVRIPPLDV------ 69
Query: 142 LHVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNL 201
+K +G ++ + + L R+V+++D +IVLNKPP L V+G
Sbjct: 70 -----------DAKAKSGPIAGKDLKHSSDFELLSRMVLHEDEKVIVLNKPPGLAVQGGS 118
Query: 202 PVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKS 261
V +D S E P+LVHRLD+++SG+L+ RT+ + L F ++ K+
Sbjct: 119 GVARHIDQMLEAWTS-PKGEKPRLVHRLDRDTSGVLVIARTRGAAQKLTAAFRERDTKKT 177
Query: 262 SCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQ 321
YWALV G P + E I L K DG +R+ +A H +
Sbjct: 178 ---------------YWALVKGVPRKHEDKISTWLVKEPTADG--DRMRIAKHGE-DGAD 219
Query: 322 EAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKY 370
AV+ YRVL +W+E+ P T R HQLRVH +G PI+GD KY
Sbjct: 220 HAVSFYRVLETAAQNLAWLEMEPYTGRTHQLRVHALH-IGHPIIGDPKY 267
>A4U0J7_9PROT (tr|A4U0J7) Pseudouridine synthase OS=Magnetospirillum
gryphiswaldense GN=MGR_1296 PE=3 SV=1
Length = 333
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 89/290 (30%), Positives = 135/290 (46%), Gaps = 46/290 (15%)
Query: 84 WIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKPMRKMRPNDVMKPGARLH 143
W K ++ ++E R G V+++ ++ + N + PG +
Sbjct: 21 WFKRHYPTVGHGLLEKWLRTGQVRVDG-----------------KRAKANQRLSPGLHIR 63
Query: 144 VPVSMAETRISKRYDAIPSGTLYPNADE--IKYLQRLVIYKDSAIIVLNKPPKLPVKGNL 201
VP + E K A P P DE + L+ V+Y D +I LNKP + V+G
Sbjct: 64 VP-PVPEGEAPK---ANPE-NRRPAVDEKIARMLRDAVLYMDDDVIALNKPAGIAVQGGT 118
Query: 202 PVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKS 261
+ +D D+ P+LVHRLDK++SG+LL GR+ ++ + L F + A
Sbjct: 119 GTGDKHIDAWLDALMFDRDDRPRLVHRLDKDTSGVLLLGRSANAAAKLAAAFK--SRAAR 176
Query: 262 SCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQ 321
C YWALV+G P ++G I A L+K+ G+ V + +
Sbjct: 177 KC-------------YWALVVGVPKLRQGRIDAALAKLPGRAGEKMAV------DEDEGK 217
Query: 322 EAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKYG 371
AVT YRV+ + +W+E+ P T R HQLR H A +GTPI+GD KYG
Sbjct: 218 RAVTWYRVVDNALRKAAWLEMEPRTGRTHQLRAHTA-LMGTPIMGDGKYG 266
>A6FLR0_9RHOB (tr|A6FLR0) Pseudouridine synthase OS=Roseobacter sp. AzwK-3b
GN=RAZWK3B_03870 PE=3 SV=1
Length = 348
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/206 (34%), Positives = 106/206 (51%), Gaps = 22/206 (10%)
Query: 171 EIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLD 230
+ + +Q VIY+D II LNKPP LPV+G +D + +E P+LVHRLD
Sbjct: 86 DARMIQSAVIYRDDHIIALNKPPGLPVQGGSKQTRHVDGLADALR-FGAEEKPRLVHRLD 144
Query: 231 KESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEG 290
K++SG+L+ R++ L F + ++ K YWA V G P+ + G
Sbjct: 145 KDTSGVLILARSRAVAKTLTAGFRHRDTRKI---------------YWAAVAGVPSPRMG 189
Query: 291 IIHAPLSKVLLN--DGKTERVMLAHHSTIEPR---QEAVTEYRVLGPKINGCSWVELRPL 345
I L K + G+ E+++ H ++ + A T++ V+ C+WV L P+
Sbjct: 190 TIRFGLVKAPGHGAQGEGEKMLCLHPEAVDSTPGAKRATTDFAVIESAGARCAWVALVPV 249
Query: 346 TSRKHQLRVHCAEALGTPIVGDYKYG 371
T R HQLR H AE +G PIVGD KYG
Sbjct: 250 TGRTHQLRAHMAE-IGHPIVGDGKYG 274
>E0MJS5_9RHOB (tr|E0MJS5) Pseudouridine synthase OS=Ahrensia sp. R2A130 GN=rluC
PE=3 SV=1
Length = 338
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 89/303 (29%), Positives = 136/303 (44%), Gaps = 51/303 (16%)
Query: 84 WIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKPMRKMRPNDVMK----PG 139
W K ++ G ++ R G V+++ R+K ++ V++
Sbjct: 23 WFKLHYPGVGFGKLQKLLRSGQVRVDG-----------GRVKTASRLEAGQVVRIPPLDS 71
Query: 140 ARLHVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKG 199
A P+ M I R+D L+ +++Y+D ++V NKP L V+G
Sbjct: 72 AASDKPLHMTSNTIRDRHDE-------------DVLRDMILYEDKKVLVFNKPSGLAVQG 118
Query: 200 NLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSA 259
+ S+D + P+L HRLD+++SG+L+ +T+ + + L F +
Sbjct: 119 GSGISRSVDSMLESLRDK-AGQKPRLCHRLDRDTSGVLVVAKTRGAAAALTKSFRQRTTQ 177
Query: 260 KSSCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEP 319
K+ YWALV G P +KEG I L K DG +R+ +A H
Sbjct: 178 KT---------------YWALVRGIPRQKEGRISTYLVKEQTEDG--DRMRVAKHGERHA 220
Query: 320 RQEAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVHNRWK 379
AV+ YRV+ SWVEL P T R HQLRVH A+ +G PI+GD KY F W
Sbjct: 221 -DHAVSFYRVIDSNPRTVSWVELSPHTGRTHQLRVH-ADHIGHPIIGDNKY--FSTENW- 275
Query: 380 QMP 382
+MP
Sbjct: 276 EMP 278
>Q0FIH4_9RHOB (tr|Q0FIH4) Pseudouridine synthase OS=Pelagibaca bermudensis
HTCC2601 GN=R2601_09522 PE=3 SV=1
Length = 350
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 100/312 (32%), Positives = 143/312 (45%), Gaps = 55/312 (17%)
Query: 69 PGASGQQRDHVTAVNWIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKPMR 128
PG Q+ D W+K F IE RKG ++++ + R++ +
Sbjct: 11 PGDGDQRLD-----RWLKRQFPHLQQGRIEKMCRKGELRVDG-----GRCKAATRLEVGQ 60
Query: 129 KMRPNDVMKPGARLHVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIV 188
++R + +PG P A+ P T+ +AD K ++ VIY+D II
Sbjct: 61 QVRVPPLPEPG---ETPAPAAK----------PKATVS-DADA-KMIRDAVIYRDDHIIA 105
Query: 189 LNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSH 248
LNKPP LPV+G +D +DYDE P+LVHRLDK++SG+LL RT++
Sbjct: 106 LNKPPGLPVQGGSKQERHVDGLAEAL-RFDYDEKPRLVHRLDKDTSGVLLLARTREIAQA 164
Query: 249 LQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLN--DGKT 306
L + + T + YWA+V G P G I L K + G+
Sbjct: 165 LTGAIRH---------------KQTRKIYWAVVAGVPTPYLGEIRFGLVKAPGHGKSGEG 209
Query: 307 ERVMLAHHSTIEPRQEA-------VTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEA 359
E+++ H ++ A T YRV G SWV L P+T R HQLR H AE
Sbjct: 210 EKMICVHPREMDRTPGAKRAHTLYATLYRVAGR----ASWVALEPITGRTHQLRAHMAE- 264
Query: 360 LGTPIVGDYKYG 371
+G PI+GD KYG
Sbjct: 265 IGHPIIGDGKYG 276
>J0VKL5_RHILT (tr|J0VKL5) Pseudouridine synthase OS=Rhizobium leguminosarum bv.
trifolii WSM2012 GN=Rleg10DRAFT_1788 PE=3 SV=1
Length = 330
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 88/292 (30%), Positives = 138/292 (47%), Gaps = 50/292 (17%)
Query: 84 WIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKPMRKMR--PNDV---MKP 138
W K +F G ++ R G V+++ + D R++P + +R P DV +K
Sbjct: 21 WFKVHFPGLGFGPLQKLLRSGQVRVDG-----GRVKSDARVQPGQTVRVPPLDVDAKLKS 75
Query: 139 GARLHVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVK 198
G P++ G ++ + + L R+V+++D +IVLNKPP + V+
Sbjct: 76 G-----PIA---------------GKDLKHSSDFELLSRMVLHEDDKVIVLNKPPGIAVQ 115
Query: 199 GNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINS 258
G V +D S E P+LVHRLD+++SG+L+ RT+ + L F ++
Sbjct: 116 GGSGVSRHIDQMLEAWTS-PKGEKPRLVHRLDRDTSGVLVIARTRGAAQKLTAAFRERDT 174
Query: 259 AKSSCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIE 318
K+ YWALV G P + E I L K DG +R+ +A H +
Sbjct: 175 KKT---------------YWALVKGVPRKHEDKISTWLVKEPTADG--DRMRIAKHGE-D 216
Query: 319 PRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKY 370
A++ YRV+ +W+E+ P T R HQLRVH +G PI+GD KY
Sbjct: 217 GADHAISFYRVVETAAQNLAWLEMEPYTGRTHQLRVHALH-IGHPIIGDPKY 267
>B9QXV5_9RHOB (tr|B9QXV5) Pseudouridine synthase OS=Labrenzia alexandrii DFL-11
GN=SADFL11_751 PE=3 SV=1
Length = 340
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/287 (27%), Positives = 130/287 (45%), Gaps = 39/287 (13%)
Query: 84 WIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKPMRKMRPNDVMKPGARLH 143
W K ++ G ++ R G V+++ ++ N + G +
Sbjct: 21 WFKAHYPGLGFGRLQKLLRTGQVRVDG-----------------KRAESNTRIAKGQIIR 63
Query: 144 VPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPV 203
+P E + +A P T AD+ K ++ +++Y+D+ ++VLNKP L V+G +
Sbjct: 64 IPPLGVELPADDKKNARPKSTKLI-ADDKKAIEDMLLYEDNQVMVLNKPAGLAVQGGSGL 122
Query: 204 HNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKSSC 263
+D ++ P+LVHRLD+E+SGI+L RT+ + L F + N+ K
Sbjct: 123 KRHLDGMLDAFTDQKGNK-PRLVHRLDRETSGIILVARTRQAAQELTKAFRHRNTRKV-- 179
Query: 264 KAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEA 323
YW ++ G P +G I S L D + ER+ + + Q A
Sbjct: 180 -------------YWTILAGVPKPHQGRI----STFLARDEEEERMQVVRQGGADDAQHA 222
Query: 324 VTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKY 370
V+ Y V SWV ++P+T R HQLR H A +G PI+GD KY
Sbjct: 223 VSLYSVFEKSGQKLSWVTMKPVTGRTHQLRAHAAH-IGHPIIGDDKY 268
>J2INJ7_9RHIZ (tr|J2INJ7) Pseudouridine synthase OS=Rhizobium sp. CF122
GN=PMI09_01110 PE=3 SV=1
Length = 316
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 87/289 (30%), Positives = 136/289 (47%), Gaps = 44/289 (15%)
Query: 84 WIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKPMRKMR--PNDVMKPGAR 141
W K +F G ++ R G V+++ + D R++P + +R P DV
Sbjct: 6 WFKVHFPGLGFGPLQKLLRSGQVRVDG-----GRVKSDTRVQPGQVVRVPPLDV------ 54
Query: 142 LHVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNL 201
+K + +G + + + LQR+V+++D +IVLNKP L V+G
Sbjct: 55 -----------DAKSKNTPIAGHDLKHGGDYELLQRMVLHEDDKVIVLNKPAGLAVQGGS 103
Query: 202 PVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKS 261
V ++D S E P+LVHRLD+++SG+L+ RT+ + L F ++ K+
Sbjct: 104 GVTRNIDKMLEAWTS-PKGEKPRLVHRLDRDTSGVLVIARTRGAAQKLTAAFRERDTKKT 162
Query: 262 SCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQ 321
YW+LV G P + E I L K DG +R+ +A H +
Sbjct: 163 ---------------YWSLVRGVPRKHEDKISTWLVKEATADG--DRMRVAKHGE-DGAD 204
Query: 322 EAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKY 370
A++ YRVL +W+E+ P T R HQLRVH +G PI+GD KY
Sbjct: 205 HAISYYRVLETAAQNLAWLEMEPYTGRTHQLRVHALH-IGHPIIGDPKY 252
>B7QX41_9RHOB (tr|B7QX41) Pseudouridine synthase OS=Ruegeria sp. R11 GN=RR11_2818
PE=3 SV=1
Length = 348
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 105/206 (50%), Gaps = 22/206 (10%)
Query: 171 EIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLD 230
+ K ++ VIYKD A+IVLNKP L V+G +D +D +E P+LVHRLD
Sbjct: 86 DAKMIRGCVIYKDDAVIVLNKPAGLAVQGGSGTTKHVDGLSEAL-KFDAEEKPRLVHRLD 144
Query: 231 KESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEG 290
K++SG+L+ RT+ + L F + AT + YWALV G P G
Sbjct: 145 KDTSGVLVLARTRQAAQALTAAFRH---------------HATRKIYWALVAGVPTPYLG 189
Query: 291 IIHAPLSKV--LLNDGKTERVMLAHHSTIEPR---QEAVTEYRVLGPKINGCSWVELRPL 345
I L K G+ E+++ H + ++ + + T+Y L + +WV + P+
Sbjct: 190 EIKCGLVKAPGHGKSGEGEKMIAIHSNEVDSTPGAKRSHTQYATLYRVASRAAWVAMEPI 249
Query: 346 TSRKHQLRVHCAEALGTPIVGDYKYG 371
T R HQLR H AE +G PI GD KYG
Sbjct: 250 TGRTHQLRAHMAE-IGHPIAGDGKYG 274
>J0C8S3_RHILT (tr|J0C8S3) Pseudouridine synthase OS=Rhizobium leguminosarum bv.
trifolii WSM2297 GN=Rleg4DRAFT_1010 PE=3 SV=1
Length = 330
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 88/292 (30%), Positives = 138/292 (47%), Gaps = 50/292 (17%)
Query: 84 WIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKPMRKMR--PNDV---MKP 138
W K +F G ++ R G V+++ + D R++P + +R P DV +K
Sbjct: 21 WFKVHFPGLGFGPLQKLLRSGQVRVDG-----GRVKSDARVQPGQTVRVPPLDVDAKLKS 75
Query: 139 GARLHVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVK 198
G P++ G ++ + + L R+V+++D +IVLNKPP + V+
Sbjct: 76 G-----PIA---------------GKDLKHSSDFELLSRMVLHEDDKVIVLNKPPGIAVQ 115
Query: 199 GNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINS 258
G V +D S E P+LVHRLD+++SG+L+ RT+ + L F ++
Sbjct: 116 GGSGVARHIDQMLEAWTS-PKGEKPRLVHRLDRDTSGVLVIARTRGAAQKLTAAFRERDT 174
Query: 259 AKSSCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIE 318
K+ YWALV G P + E I L K DG +R+ +A H +
Sbjct: 175 KKT---------------YWALVKGVPRKHEDKISTWLVKEPTADG--DRMRIAKHGE-D 216
Query: 319 PRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKY 370
A++ YRV+ +W+E+ P T R HQLRVH +G PI+GD KY
Sbjct: 217 GADHAISFYRVVETAAQNLAWLEMEPYTGRTHQLRVHALH-IGHPIIGDPKY 267
>M2X6B1_GALSU (tr|M2X6B1) Ribosomal large subunit pseudouridine synthase C
OS=Galdieria sulphuraria GN=Gasu_08000 PE=4 SV=1
Length = 358
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/196 (37%), Positives = 96/196 (48%), Gaps = 37/196 (18%)
Query: 175 LQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESS 234
+Q V+YKD+ ++V+NKPP L +G + +S S D +E PKLVHRLDKE S
Sbjct: 129 VQNWVLYKDTNLMVINKPPLLACQGGSGLRDSHLGTLLPALSLDNEEPPKLVHRLDKEVS 188
Query: 235 GILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGIIHA 294
G LL R + +L LF K YWALVIG P +G I
Sbjct: 189 GTLLLARNSVAAKNLALLFQQRQVKKL---------------YWALVIGNPLPTQGEIRK 233
Query: 295 PLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQLRV 354
+ DGKT A+T YRV+ + +W+EL P+T RK QLR+
Sbjct: 234 AV------DGKT----------------AITRYRVVEKLHSVAAWLELEPITGRKRQLRL 271
Query: 355 HCAEALGTPIVGDYKY 370
HCA+ L PI GD K+
Sbjct: 272 HCAQVLNCPIFGDEKF 287
>J1JYE3_9RHIZ (tr|J1JYE3) Pseudouridine synthase OS=Bartonella melophagi K-2C
GN=ME3_00649 PE=3 SV=1
Length = 326
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 90/311 (28%), Positives = 143/311 (45%), Gaps = 49/311 (15%)
Query: 70 GASGQQRDHVTAVNWIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKPMRK 129
G SG + D W K ++ G ++ R G ++++ R+
Sbjct: 11 GESGMRLD-----RWFKVHYSGLAFGYLQKLLRSGQIRVDG-----------------RR 48
Query: 130 MRPNDVMKPGARLHVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVL 189
++ + + G + VP + +K+ ++ T++ + D++ L+ +++YKD I VL
Sbjct: 49 VKTDIRLVIGQSIRVPFLSVD---NKKNLSVTDKTIH-DQDKLAILEEMLLYKDPKIFVL 104
Query: 190 NKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHL 249
NKP L V+G + +D + E P+LVHRLD+E+SG+L+ R++ + L
Sbjct: 105 NKPAGLAVQGGSGLTCHIDGMLEVWRNKK-GEKPRLVHRLDRETSGVLIIARSRGAAQAL 163
Query: 250 QWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERV 309
F T + YWALV G P +K+ I + K G RV
Sbjct: 164 TAAFR---------------ARETKKTYWALVRGVPRKKQDKISTWMVKETTTQGDKMRV 208
Query: 310 MLAHHSTIEP-RQEAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDY 368
H EP AV+ YRVL + SW+E+ P T R HQLRVH A + PI+GD
Sbjct: 209 --CEHG--EPDSNHAVSYYRVLDTRGRALSWLEMEPYTGRTHQLRVHAA-YMNHPIIGDS 263
Query: 369 KYGWFVHNRWK 379
KY +F N W+
Sbjct: 264 KY-FFSDNNWE 273
>L1QJR9_BREDI (tr|L1QJR9) Pseudouridine synthase OS=Brevundimonas diminuta 470-4
GN=HMPREF0185_01721 PE=3 SV=1
Length = 331
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 83/249 (33%), Positives = 119/249 (47%), Gaps = 39/249 (15%)
Query: 129 KMRPNDVMKPGARLHVPVSMAETRISKRYDAIPS--GTLYPNAD-EIKYLQRLVIYKDSA 185
+++P D + GA + VP DA P G L+ + +I Y + LV+Y+D
Sbjct: 50 RVKPQDRLTAGAAVRVP---------PLPDANPRKPGDLHELTERDIAYAKSLVLYEDHM 100
Query: 186 IIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEG---PKLVHRLDKESSGILLFGRT 242
+I LNKP L V+G +D + EG P+LVHRLD+++SG+LL G+
Sbjct: 101 VIALNKPHGLAVQGGTKTTKHVDRLLSA-----WGEGMQRPRLVHRLDRDTSGVLLLGKG 155
Query: 243 KDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLN 302
++ L F+ + K+ YWA+VIG P G I L K +N
Sbjct: 156 PEAAKRLAGAFARRQAKKT---------------YWAIVIGNPKPSAGQIDMALKKTGIN 200
Query: 303 DGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGT 362
D + R A EP A T + + + +W+ LRP T R HQLR H A A+G
Sbjct: 201 DFEMMRPAEAKDPKGEP---AETAFATISRAAHRAAWMALRPFTGRTHQLRAHMA-AIGH 256
Query: 363 PIVGDYKYG 371
PI+GD KYG
Sbjct: 257 PILGDPKYG 265
>Q2K820_RHIEC (tr|Q2K820) Pseudouridine synthase OS=Rhizobium etli (strain CFN 42
/ ATCC 51251) GN=rluC PE=3 SV=1
Length = 317
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 83/287 (28%), Positives = 135/287 (47%), Gaps = 40/287 (13%)
Query: 84 WIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKPMRKMRPNDVMKPGARLH 143
W K +F G ++ R G V+++ +++ + ++PG +
Sbjct: 6 WFKVHFPGLGFGPLQKLLRSGQVRVDG-----------------GRVKSDARVQPGQMVR 48
Query: 144 VPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPV 203
VP + ++ +G ++ + + L R+V+++D +IVLNKPP L V+G V
Sbjct: 49 VPPLDVDAKLKS---GPIAGKDLKHSSDFELLSRMVLHEDEKVIVLNKPPGLAVQGGSGV 105
Query: 204 HNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKSSC 263
+D S E P+LVHRLD+++SG+L+ RT+ + L F ++ K+
Sbjct: 106 ARHIDQMLEAWIS-PKGEKPRLVHRLDRDTSGVLVIARTRGAAQKLTAAFRERDTKKT-- 162
Query: 264 KAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEA 323
YW+LV G P + E I L K DG +R+ +A H + A
Sbjct: 163 -------------YWSLVKGVPRKHEDKISTWLVKEPTADG--DRMRIAKHGE-DGADHA 206
Query: 324 VTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKY 370
V+ YRV+ +W+E+ P T R HQLRVH +G PI+GD KY
Sbjct: 207 VSYYRVVETAAQRLAWLEMEPYTGRTHQLRVHALH-IGHPIIGDPKY 252
>A0NWE6_9RHOB (tr|A0NWE6) Pseudouridine synthase OS=Labrenzia aggregata IAM 12614
GN=SIAM614_15997 PE=3 SV=1
Length = 355
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 83/287 (28%), Positives = 134/287 (46%), Gaps = 40/287 (13%)
Query: 84 WIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKPMRKMRPNDVMKPGARLH 143
W K ++ G ++ R G V+++ ++ N + G +
Sbjct: 37 WFKSHYPGLGFGHLQKLLRTGQVRVDG-----------------KRAETNTRIAKGQMIR 79
Query: 144 VPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPV 203
+P E + +A P T AD+ K ++ +++++DS ++VLNKP L V+G +
Sbjct: 80 IPPLGVELPADDKKNAKPKSTKLI-ADDRKAIEDMLLFEDSQVMVLNKPAGLAVQGGSGL 138
Query: 204 HNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKSSC 263
+D ++ P+LVHRLD+E+SGI+L RT+ + L F + N+ K
Sbjct: 139 KRHLDGMLDAYTDRKGNK-PRLVHRLDRETSGIILVARTRQAAQELTKAFRHRNTRKI-- 195
Query: 264 KAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEA 323
YWA++ G P +G I L++ NDG+ ER+ + E Q A
Sbjct: 196 -------------YWAILAGVPKPFQGRISTFLAR---NDGE-ERMQVVRQGEDEA-QHA 237
Query: 324 VTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKY 370
V+ Y V SWV ++P+T R HQLR H A +G PI+GD KY
Sbjct: 238 VSLYSVFEKSGQKLSWVTMKPVTGRTHQLRAHAAH-IGHPIIGDDKY 283
>E8RTG1_ASTEC (tr|E8RTG1) Pseudouridine synthase OS=Asticcacaulis excentricus
(strain ATCC 15261 / DSM 4724 / VKM B-1370 / CB 48)
GN=Astex_3147 PE=3 SV=1
Length = 335
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 76/204 (37%), Positives = 108/204 (52%), Gaps = 29/204 (14%)
Query: 171 EIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEG---PKLVH 227
E++Y + LV+Y+D +I +NKP L V+G N +D + EG P+LVH
Sbjct: 88 EVRYAKSLVLYEDEDVIAINKPSGLAVQGGTKTKNHIDRLLSA-----WGEGLERPRLVH 142
Query: 228 RLDKESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNE 287
RLD+++SG+LL G++ + ++ A A Y+ YWALV GTP+
Sbjct: 143 RLDRDTSGVLLLGKS---------------PSAAARLAGAFAKRKAYKTYWALVAGTPDP 187
Query: 288 KEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAV-TEYRVLGPKINGCSWVELRPLT 346
KEG+I PL K +ND R M+ EP EA TEY + + +W+ LRP T
Sbjct: 188 KEGVIDVPLVKKGIND----REMVMPADPKEPGAEAAETEYVTISRAAHRLAWMALRPHT 243
Query: 347 SRKHQLRVHCAEALGTPIVGDYKY 370
R HQLR H +A+G I+GD KY
Sbjct: 244 GRTHQLRAHM-QAIGHCILGDPKY 266
>G7Z8U5_AZOL4 (tr|G7Z8U5) Pseudouridine synthase OS=Azospirillum lipoferum
(strain 4B) GN=rluC PE=3 SV=1
Length = 354
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 77/200 (38%), Positives = 102/200 (51%), Gaps = 23/200 (11%)
Query: 171 EIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLD 230
+I LQ LV+Y+D+ +I +NKP L V+G +D +D +E PKLVHRLD
Sbjct: 112 QIAELQALVLYRDADVIAINKPAGLAVQGGTGTSKHLDAMLDALR-FDGNERPKLVHRLD 170
Query: 231 KESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEG 290
K++SG+LL RT + S L LF A + YWA+ +G P +G
Sbjct: 171 KDTSGVLLLARTTFAASKLTELFRG---------------SAVRKIYWAVTVGVPTPYQG 215
Query: 291 IIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKH 350
I L+K G ERV E + AVT Y V ++V + PLT R H
Sbjct: 216 KIDLALAKEGGPHG--ERVA----ENKEEGKRAVTVYSVQENVGKQAAFVAMWPLTGRTH 269
Query: 351 QLRVHCAEALGTPIVGDYKY 370
QLRVH A A+GTPI+GD KY
Sbjct: 270 QLRVHMA-AVGTPILGDGKY 288
>D3NWH6_AZOS1 (tr|D3NWH6) Pseudouridine synthase OS=Azospirillum sp. (strain
B510) GN=rluC PE=3 SV=1
Length = 354
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 77/200 (38%), Positives = 102/200 (51%), Gaps = 23/200 (11%)
Query: 171 EIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLD 230
+I LQ LV+Y+D+ +I +NKP L V+G +D +D +E PKLVHRLD
Sbjct: 112 QIAELQALVLYRDADVIAINKPAGLAVQGGTGTSKHLDAMLDALR-FDGNERPKLVHRLD 170
Query: 231 KESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEG 290
K++SG+LL RT + S L LF A + YWA+ +G P +G
Sbjct: 171 KDTSGVLLLARTTFAASKLTELFRG---------------SAVRKIYWAVTVGVPTPYQG 215
Query: 291 IIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKH 350
I L+K G ERV E + AVT Y V ++V + PLT R H
Sbjct: 216 KIDLALAKEGGPHG--ERVA----ENKEEGKRAVTVYSVQENVGKQAAFVAMWPLTGRTH 269
Query: 351 QLRVHCAEALGTPIVGDYKY 370
QLRVH A A+GTPI+GD KY
Sbjct: 270 QLRVHMA-AVGTPILGDGKY 288
>I7DTR0_PHAG2 (tr|I7DTR0) Pseudouridine synthase OS=Phaeobacter gallaeciensis
(strain 2.10) GN=rluC PE=3 SV=1
Length = 348
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 104/206 (50%), Gaps = 22/206 (10%)
Query: 171 EIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLD 230
+ K ++ VIYKD A+IVLNKP L V+G +D +D +E P+LVHRLD
Sbjct: 86 DAKMIRGCVIYKDDAVIVLNKPAGLAVQGGSGTTKHVDGLSAAL-QFDAEEKPRLVHRLD 144
Query: 231 KESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEG 290
K++SG+L+ RT+ + L F + AT + YWALV G P G
Sbjct: 145 KDTSGVLVLARTRLAAQSLTAAFRH---------------RATRKIYWALVAGVPTPYLG 189
Query: 291 IIHAPLSKV--LLNDGKTERVMLAHHSTIEPR---QEAVTEYRVLGPKINGCSWVELRPL 345
I L K G+ E+++ H + ++ + + T Y L + +WV + P+
Sbjct: 190 EIKCGLVKAPGHGKSGEGEKMIAIHSNEVDSTPGAKRSHTHYATLYRVASRAAWVAMEPI 249
Query: 346 TSRKHQLRVHCAEALGTPIVGDYKYG 371
T R HQLR H AE +G PI GD KYG
Sbjct: 250 TGRTHQLRAHMAE-IGHPIAGDGKYG 274
>A4EN86_9RHOB (tr|A4EN86) Pseudouridine synthase OS=Roseobacter sp. CCS2
GN=RCCS2_11452 PE=3 SV=1
Length = 351
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 74/206 (35%), Positives = 102/206 (49%), Gaps = 22/206 (10%)
Query: 171 EIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLD 230
+ K +Q VIYKD II +NKP L +G +D +DYDE P+LVHRLD
Sbjct: 88 DAKLIQSCVIYKDDHIIAINKPHGLATQGGTNTTRHVDGLSEALM-FDYDEKPRLVHRLD 146
Query: 231 KESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEG 290
K++SG+LL RT+ L N T + YWA V G P+ + G
Sbjct: 147 KDTSGVLLLARTRMMAKQL---------------TENLKHRETRKIYWAAVAGVPHPRAG 191
Query: 291 IIHAPLSKVLLN--DGKTERVMLAH---HSTIEPRQEAVTEYRVLGPKINGCSWVELRPL 345
I L K + G+ E++ H ++E + A ++Y V+ + +W L P+
Sbjct: 192 TIKYGLVKAPGHGRGGENEKMRCVHPRDLDSVEGAKRATSDYAVMDTLASRAAWCALVPI 251
Query: 346 TSRKHQLRVHCAEALGTPIVGDYKYG 371
T R HQLR H AE +G PIVGD KYG
Sbjct: 252 TGRTHQLRAHMAE-IGHPIVGDGKYG 276
>N6VLC0_9RHIZ (tr|N6VLC0) Ribosomal large subunit pseudouridine synthase C
OS=Bartonella schoenbuchensis m07a GN=rluC PE=4 SV=1
Length = 326
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 90/311 (28%), Positives = 144/311 (46%), Gaps = 49/311 (15%)
Query: 70 GASGQQRDHVTAVNWIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKPMRK 129
G SG + D W K ++ G ++ R G ++++ R+
Sbjct: 11 GESGMRLD-----RWFKVHYPGLAFGYLQKLLRSGQIRVDG-----------------RR 48
Query: 130 MRPNDVMKPGARLHVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVL 189
++ + + G + VP + +K+ ++ T++ + D++ L+++++YKD I VL
Sbjct: 49 VKTDIRLIIGQSIRVPFLSVD---NKKNLSVTDKTIH-DQDKLAILEKMLLYKDPKIFVL 104
Query: 190 NKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHL 249
NKP L V+G + +D + E P+LVHRLD+E+SG+L+ R++ + L
Sbjct: 105 NKPAGLAVQGGSGLTCHIDGMLEVWRNKK-GEKPRLVHRLDRETSGVLIIARSRGAAQAL 163
Query: 250 QWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERV 309
F T + YWALV G P +K+ I + K G RV
Sbjct: 164 TAAFR---------------ARETKKTYWALVRGVPRKKQDKISTWMVKETTAQGDKMRV 208
Query: 310 MLAHHSTIEP-RQEAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDY 368
H EP AV+ YRVL + SW+E+ P T R HQLRVH A + PI+GD
Sbjct: 209 --CEHG--EPDSNHAVSYYRVLDTRGRALSWLEMEPYTGRTHQLRVHAA-YMDHPIIGDS 263
Query: 369 KYGWFVHNRWK 379
KY +F N W+
Sbjct: 264 KY-FFSDNNWE 273
>I1ASF0_9RHOB (tr|I1ASF0) Pseudouridine synthase OS=Citreicella sp. 357
GN=C357_18846 PE=3 SV=1
Length = 352
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 106/209 (50%), Gaps = 22/209 (10%)
Query: 168 NADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVH 227
NA++++ +Q V++KD +I +NKP LP +G +D + DE P+LVH
Sbjct: 87 NAEDVELIQSCVLWKDDHVIAINKPAGLPTQGGSGQLRHVDGMADAL-RFGMDEKPRLVH 145
Query: 228 RLDKESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNE 287
RLDK++SG+LL RT+++ L + + T + YWA+V G P
Sbjct: 146 RLDKDTSGVLLLARTREAAQALTAALRH---------------KQTRKIYWAVVAGVPTP 190
Query: 288 KEGIIHAPLSKVLLN--DGKTERVMLAHH---STIEPRQEAVTEYRVLGPKINGCSWVEL 342
G I L K + G+ E+++ H T E + A T Y L + SWV L
Sbjct: 191 YLGEIRYGLVKARGHGKGGEAEKMVCVHPRDIGTTEGAKRAHTLYATLYRVASRASWVAL 250
Query: 343 RPLTSRKHQLRVHCAEALGTPIVGDYKYG 371
PLT R HQLR H AE +G PI+GD KYG
Sbjct: 251 EPLTGRTHQLRAHMAE-IGHPIIGDGKYG 278
>I7EII9_PHAGD (tr|I7EII9) Pseudouridine synthase OS=Phaeobacter gallaeciensis
(strain ATCC 700781 / DSM 17395 / CIP 105210 / NBRC
16654 / BS107) GN=rluC PE=3 SV=1
Length = 343
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 104/206 (50%), Gaps = 22/206 (10%)
Query: 171 EIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLD 230
+ K ++ VIYKD A+IVLNKP L V+G +D +D +E P+LVHRLD
Sbjct: 81 DAKMIRGCVIYKDDAVIVLNKPAGLAVQGGSGTTKHVDGLSAAL-QFDAEEKPRLVHRLD 139
Query: 231 KESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEG 290
K++SG+L+ RT+ + L F + AT + YWALV G P G
Sbjct: 140 KDTSGVLVLARTRLAAQSLTAAFRH---------------RATRKIYWALVAGVPTPYLG 184
Query: 291 IIHAPLSKV--LLNDGKTERVMLAHHSTIEPR---QEAVTEYRVLGPKINGCSWVELRPL 345
I L K G+ E+++ H + ++ + + T Y L + +WV + P+
Sbjct: 185 EIKCGLVKAPGHGKSGEGEKMIAIHSNEVDSTPGAKRSHTHYATLYRVASRAAWVAMEPI 244
Query: 346 TSRKHQLRVHCAEALGTPIVGDYKYG 371
T R HQLR H AE +G PI GD KYG
Sbjct: 245 TGRTHQLRAHMAE-IGHPIAGDGKYG 269
>K2LKW2_9RHIZ (tr|K2LKW2) Pseudouridine synthase OS=Nitratireductor pacificus
pht-3B GN=NA2_13470 PE=3 SV=1
Length = 328
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 84/288 (29%), Positives = 135/288 (46%), Gaps = 43/288 (14%)
Query: 84 WIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKPMRKMRPNDVMKPGARLH 143
W K +F G ++ R G V+++ + + + +K G +
Sbjct: 21 WFKVHFPGLGFGHLQKLLRSGQVRVDG-----------------GRAKADTRVKAGQMVR 63
Query: 144 VPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPV 203
+P + + S D + + +L D + L ++++Y+D + V NKP L V+G V
Sbjct: 64 IPPLAVDRKGS---DGMTARSLRDTGD-AEALSQMLLYEDPKVFVFNKPAGLAVQGGSGV 119
Query: 204 HNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKSSC 263
H +D + E P+LVHR+D+++SG+L+ RT+ + L F + K+
Sbjct: 120 HRHVDDMLEAWRNKK-GEKPRLVHRIDRDTSGVLVVARTRQAAMRLAEAFRARETKKT-- 176
Query: 264 KAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQE- 322
YWALV G P ++EG I L K DG +R+ + H EP +
Sbjct: 177 -------------YWALVKGVPKQREGRISTWLVKEQTPDG--DRMRVTKHG--EPDSDH 219
Query: 323 AVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKY 370
AV+ YR++ SW+E+ P T R HQLRVH A +G PI+GD KY
Sbjct: 220 AVSNYRLIEQAGMTLSWLEMEPYTGRTHQLRVHAAH-IGCPIIGDPKY 266
>E2CP16_9RHOB (tr|E2CP16) Pseudouridine synthase OS=Roseibium sp. TrichSKD4
GN=rluC PE=3 SV=1
Length = 333
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 82/287 (28%), Positives = 132/287 (45%), Gaps = 40/287 (13%)
Query: 84 WIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKPMRKMRPNDVMKPGARLH 143
W K ++ G ++ R G V+++ ++ N + G +
Sbjct: 21 WFKAHYPGMGFGRLQKLLRTGQVRVDG-----------------KRAESNTRIAKGQTVR 63
Query: 144 VPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPV 203
+P E + + +A P + AD+ ++ +++++D+ ++VLNKP L V+G +
Sbjct: 64 IPPLGVELPANDKKNAKPKSSKL-MADDKAAIEDMMLFEDNHVMVLNKPAGLAVQGGSGL 122
Query: 204 HNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKSSC 263
+D + E PKLVHRLD+E+SGI+L +T+ + L F + N+ K
Sbjct: 123 KRHLDGMLEAYTNKK-GEKPKLVHRLDRETSGIILVAKTRKAAQELTKAFRHRNTRKI-- 179
Query: 264 KAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEA 323
YWA++ G P +G I S L + ER+ +A H E Q A
Sbjct: 180 -------------YWAMLAGVPKPHQGRI----STYLARSEEMERMRVARHGDDEA-QHA 221
Query: 324 VTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKY 370
V+ Y V SWV L+P+T R HQLR H A +G PI+GD KY
Sbjct: 222 VSLYSVFEKSAQKLSWVTLKPVTGRTHQLRAHAAH-IGHPIIGDDKY 267
>H0RP78_9BRAD (tr|H0RP78) Pseudouridine synthase OS=Bradyrhizobium sp. ORS 285
GN=BRAO285_1000092 PE=3 SV=1
Length = 468
Score = 113 bits (283), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 103/199 (51%), Gaps = 20/199 (10%)
Query: 172 IKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDK 231
+ L+ + +Y+D ++VLNKP L V+G + +D + P+LVHR+D+
Sbjct: 224 LDSLEAMTLYEDDDVLVLNKPAGLAVQGGSGMTRHIDQMLEVMRDA-KGQKPRLVHRIDR 282
Query: 232 ESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGI 291
E+SG LL +T+ + +HL F + ++ K YWALV G P K+G
Sbjct: 283 ETSGCLLIAKTRFAATHLTGAFRHRSARKV---------------YWALVAGVPKPKQGR 327
Query: 292 IHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQ 351
I L+K ++G+ + +M E AVT Y V+ N +WV L+P+T R HQ
Sbjct: 328 ISTYLAK---DEGEDDTIMRVAAHGDEGASHAVTYYAVVEASANKLAWVSLKPVTGRTHQ 384
Query: 352 LRVHCAEALGTPIVGDYKY 370
LR H A +G PIVGD KY
Sbjct: 385 LRAHMAH-IGHPIVGDPKY 402
>A8LM87_DINSH (tr|A8LM87) Pseudouridine synthase OS=Dinoroseobacter shibae
(strain DFL 12) GN=rluC PE=3 SV=1
Length = 348
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 92/299 (30%), Positives = 135/299 (45%), Gaps = 54/299 (18%)
Query: 83 NWIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKPMRKMRPNDVMKPGARL 142
W++ F IE RKG ++++ +++P ++ G +
Sbjct: 20 RWLRRRFPHLGQGRIEKMCRKGELRVDG-----------------GRVKPATRLQTGQAV 62
Query: 143 HVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLP 202
VP A I+ R P+ +AD + LQ VIY+D+ I+ LNKP LPV+G
Sbjct: 63 RVPPLPAPGEITAR----PARARISDADR-EMLQGTVIYRDADILALNKPAGLPVQGGSG 117
Query: 203 VHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKSS 262
+D ++ DE P+LVHRLDK++SG+LL RT+ S ++
Sbjct: 118 QERHIDGMAEAL-QFELDEPPRLVHRLDKDTSGVLLMARTRRS---------------AA 161
Query: 263 CKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLND--GKTERVMLAHHSTIEPR 320
T + YWA V G P + G + L K + G+ E+++ I+PR
Sbjct: 162 ALTAAFRARQTRKIYWAAVAGVPQPQLGTVRYALMKAPGHGKRGEGEKML-----CIDPR 216
Query: 321 Q--------EAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKYG 371
Q A T+Y VL +W L P+T R HQLR H AE LG PI+GD KYG
Sbjct: 217 QMDAHPDAKRATTDYAVLSALGRRVAWCVLVPITGRTHQLRAHMAE-LGHPIIGDGKYG 274
>I3X7X7_RHIFR (tr|I3X7X7) Pseudouridine synthase OS=Sinorhizobium fredii USDA 257
GN=rluC PE=3 SV=1
Length = 330
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 80/287 (27%), Positives = 136/287 (47%), Gaps = 39/287 (13%)
Query: 84 WIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKPMRKMRPNDVMKPGARLH 143
W K ++ G ++ R G ++++ +++ + ++PG +
Sbjct: 21 WFKVHYPGLGFGPLQKLLRSGQIRVDGA-----------------RVKSDTRIQPGQTIR 63
Query: 144 VPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPV 203
VP + + +K G ++ + L R+V+++D+ +IVLNKP L V+G V
Sbjct: 64 VPPLGVDAKETK--SGPIGGRDLRHSSDGDLLSRMVLHEDAKVIVLNKPAGLAVQGGSGV 121
Query: 204 HNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKSSC 263
+ +D S E P+LVHRLD+++SG+L+ RT+ + L F ++ K
Sbjct: 122 NRHIDKMLEAWTSQ-KGEKPRLVHRLDRDTSGVLVIARTRGAAQQLTAAFRERDTRKI-- 178
Query: 264 KAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEA 323
YW+LV G P ++E + L K DG +R+ +A H + A
Sbjct: 179 -------------YWSLVKGVPRKREDRVSTWLVKEQTPDG--DRMRIAKHGD-DGADHA 222
Query: 324 VTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKY 370
++ YR++ SW+E+ P T R HQLRVH A +G PI+GD KY
Sbjct: 223 ISYYRIIEQAGQNLSWLEMEPYTGRTHQLRVHAAH-IGHPIIGDPKY 268
>G7D531_BRAJP (tr|G7D531) Pseudouridine synthase OS=Bradyrhizobium japonicum USDA
6 GN=BJ6T_44210 PE=3 SV=1
Length = 404
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 76/210 (36%), Positives = 107/210 (50%), Gaps = 21/210 (10%)
Query: 162 SGTLYPNADE-IKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYD 220
+G L A + + L+ + IY+D ++VLNKP L V+G + +D
Sbjct: 149 AGELSEGAQKTLAALKEMTIYEDDDVLVLNKPAGLAVQGGSGMTRHIDQMLEVMRD-SRG 207
Query: 221 EGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWAL 280
+ P+LVHR+D+E+SG LL +T+ + SHL F + ++ K+ YWAL
Sbjct: 208 QKPRLVHRIDRETSGCLLIAKTRFAASHLTGAFRSRSARKT---------------YWAL 252
Query: 281 VIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWV 340
V G P K+G I L+K D R+ A H E AVT Y V+ N +WV
Sbjct: 253 VPGLPKPKQGRISTFLAKEESEDDTIMRI--AQHGD-EGASHAVTYYAVVETAGNKLTWV 309
Query: 341 ELRPLTSRKHQLRVHCAEALGTPIVGDYKY 370
L+P+T R HQLR H E +G PIVGD KY
Sbjct: 310 SLKPVTGRTHQLRAHM-EHIGHPIVGDAKY 338
>H0HVD7_9RHIZ (tr|H0HVD7) Pseudouridine synthase OS=Mesorhizobium alhagi
CCNWXJ12-2 GN=MAXJ12_20720 PE=3 SV=1
Length = 328
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 90/289 (31%), Positives = 136/289 (47%), Gaps = 45/289 (15%)
Query: 84 WIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKPMRKMR--PNDVMKPGAR 141
W K +F G ++ R G ++++ A + D R++P + +R P V + GA
Sbjct: 21 WFKTHFPGLGFGHLQKLLRSGQIRVDGGRA-----KADTRVEPGQMIRIPPLGVDQKGAG 75
Query: 142 LHVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNL 201
P++ R N D+ L ++++Y+D + V NKP L V+G
Sbjct: 76 ---PLTAKTMR---------------NQDDGDVLSQMLLYEDPKVFVFNKPAGLAVQGGS 117
Query: 202 PVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKS 261
V +D S E P+LVHRLD+++SG+L+ RT+ + L F ++ K+
Sbjct: 118 GVVRHVDDMLEAWRS-SKGEKPRLVHRLDRDTSGVLVVARTRLAAMKLAEAFRGRDAKKT 176
Query: 262 SCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQ 321
YWALV G P ++E I L K DG +RV +A H +
Sbjct: 177 ---------------YWALVKGVPKKREDKISTWLIKEPTPDG--DRVRVAQHGE-KGAD 218
Query: 322 EAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKY 370
AV+ YR+L SW+E+ P T R HQLRVH A +G PI+GD KY
Sbjct: 219 HAVSYYRILEQAGQTMSWLEMEPHTGRTHQLRVHAAH-IGCPIIGDPKY 266
>G1Y4E3_9PROT (tr|G1Y4E3) Pseudouridine synthase OS=Azospirillum amazonense Y2
GN=rluC PE=3 SV=1
Length = 337
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/200 (37%), Positives = 104/200 (52%), Gaps = 23/200 (11%)
Query: 171 EIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLD 230
E+K L+ V+Y+DS +IVLNKP L V+G + +D ++D E PKLVHRLD
Sbjct: 95 EVKALRDAVLYRDSDVIVLNKPAGLAVQGGTGQNKHLDAMLDVL-TFDGKERPKLVHRLD 153
Query: 231 KESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEG 290
K++SG L+ RT + + L F + K YWA+ +G P + +G
Sbjct: 154 KDTSGCLVLARTSFAATRLGGYFRGKEARKY---------------YWAVTVGVPKQYQG 198
Query: 291 IIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKH 350
I A L+K G ER+ + + AVT Y+V+ ++V L PLT R H
Sbjct: 199 KIDAALAKEAGTRG--ERMAVDE----DEGARAVTLYQVIENAHRQAAFVALWPLTGRTH 252
Query: 351 QLRVHCAEALGTPIVGDYKY 370
QLR H A+GTPI+GD KY
Sbjct: 253 QLRAHMV-AIGTPILGDGKY 271
>F0J1V0_ACIMA (tr|F0J1V0) Pseudouridine synthase OS=Acidiphilium multivorum
(strain DSM 11245 / JCM 8867 / AIU301) GN=ACMV_01890
PE=3 SV=1
Length = 324
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/211 (33%), Positives = 108/211 (51%), Gaps = 20/211 (9%)
Query: 161 PSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYD 220
P T+ N ++K L ++++D+ ++V++KP L +G + +D +D
Sbjct: 74 PRQTVVANEWDVKELNARILHRDADVLVIDKPAGLATQGGKGIARHLDGMLDAL-RFDAA 132
Query: 221 EGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWAL 280
E P+LVHRLD+++SG+L+ R + + L F + K+ YWA+
Sbjct: 133 ERPRLVHRLDRDTSGVLVLARNAFAANRLAAAFRGRDMEKT---------------YWAI 177
Query: 281 VIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWV 340
V+G P EG I PL+++ G R E +A+T+YR L SW+
Sbjct: 178 VVGLPIPMEGQIDLPLARIGGAQGARTRPA---DRDDEDAAKAITDYRTLDHAGRKFSWL 234
Query: 341 ELRPLTSRKHQLRVHCAEALGTPIVGDYKYG 371
EL PLT R HQLR HCA A+GTPI+GD YG
Sbjct: 235 ELHPLTGRTHQLRAHCA-AIGTPILGDAPYG 264
>A5FUW0_ACICJ (tr|A5FUW0) Pseudouridine synthase OS=Acidiphilium cryptum (strain
JF-5) GN=Acry_0164 PE=3 SV=1
Length = 324
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/211 (33%), Positives = 108/211 (51%), Gaps = 20/211 (9%)
Query: 161 PSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYD 220
P T+ N ++K L ++++D+ ++V++KP L +G + +D +D
Sbjct: 74 PRQTVVANEWDVKELNARILHRDADVLVIDKPAGLATQGGKGIARHLDGMLDAL-RFDAA 132
Query: 221 EGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWAL 280
E P+LVHRLD+++SG+L+ R + + L F + K+ YWA+
Sbjct: 133 ERPRLVHRLDRDTSGVLVLARNAFAANRLAAAFRGRDMEKT---------------YWAI 177
Query: 281 VIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWV 340
V+G P EG I PL+++ G R E +A+T+YR L SW+
Sbjct: 178 VVGLPIPMEGQIDLPLARIGGAQGARTRPA---DRDDEDAAKAITDYRTLDHAGRKFSWL 234
Query: 341 ELRPLTSRKHQLRVHCAEALGTPIVGDYKYG 371
EL PLT R HQLR HCA A+GTPI+GD YG
Sbjct: 235 ELHPLTGRTHQLRAHCA-AIGTPILGDAPYG 264
>F7S6D1_9PROT (tr|F7S6D1) Pseudouridine synthase OS=Acidiphilium sp. PM
GN=APM_1882 PE=3 SV=1
Length = 324
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/211 (33%), Positives = 108/211 (51%), Gaps = 20/211 (9%)
Query: 161 PSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYD 220
P T+ N ++K L ++++D+ ++V++KP L +G + +D +D
Sbjct: 74 PRQTVVANEWDVKELNARILHRDADVLVIDKPAGLATQGGKGIARHLDGMLDAL-RFDAA 132
Query: 221 EGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWAL 280
E P+LVHRLD+++SG+L+ R + + L F + K+ YWA+
Sbjct: 133 ERPRLVHRLDRDTSGVLVLARNAFAANRLAAAFRGRDMEKT---------------YWAI 177
Query: 281 VIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWV 340
V+G P EG I PL+++ G R E +A+T+YR L SW+
Sbjct: 178 VVGLPIPMEGQIDLPLARIGGAQGARTRPA---DRDDEDAAKAITDYRTLDHAGRKFSWL 234
Query: 341 ELRPLTSRKHQLRVHCAEALGTPIVGDYKYG 371
EL PLT R HQLR HCA A+GTPI+GD YG
Sbjct: 235 ELHPLTGRTHQLRAHCA-AIGTPILGDAPYG 264
>G9A4W2_RHIFH (tr|G9A4W2) Pseudouridine synthase OS=Rhizobium fredii (strain
HH103) GN=rluC PE=3 SV=1
Length = 357
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 83/287 (28%), Positives = 137/287 (47%), Gaps = 39/287 (13%)
Query: 84 WIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKPMRKMRPNDVMKPGARLH 143
W K ++ G ++ R G ++++ A + D R++P + +R
Sbjct: 48 WFKVHYPGLGFGPLQKLLRSGQIRVDGARA-----KSDTRIQPGQTIR------------ 90
Query: 144 VPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPV 203
VP + + +K G ++ + + L R+V+++D+ +IVLNKP L V+G V
Sbjct: 91 VPPLGVDAKETK--SGPIGGRDLRHSSDGELLSRMVLHEDAKVIVLNKPAGLAVQGGSGV 148
Query: 204 HNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKSSC 263
+D S E P+LVHRLD+++SG+L+ RT+ + L F ++ K
Sbjct: 149 SRHIDKMLEAWTSQK-GEKPRLVHRLDRDTSGVLVIARTRGAAQQLTAAFRERDTRKI-- 205
Query: 264 KAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEA 323
YW+LV G P ++E I L K DG +R+ +A H + A
Sbjct: 206 -------------YWSLVKGVPRKREDRISTWLVKEQTPDG--DRMRIAKHGD-DGADHA 249
Query: 324 VTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKY 370
++ YR++ +W+E+ P T R HQLRVH A +G PI+GD KY
Sbjct: 250 ISYYRIVEQAGQNLAWLEMEPYTGRTHQLRVHAAH-IGHPIIGDPKY 295
>L0KM91_MESAW (tr|L0KM91) Pseudouridine synthase OS=Mesorhizobium australicum
(strain LMG 24608 / HAMBI 3006 / WSM2073) GN=Mesau_04214
PE=3 SV=1
Length = 326
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 82/287 (28%), Positives = 133/287 (46%), Gaps = 41/287 (14%)
Query: 84 WIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKPMRKMRPNDVMKPGARLH 143
W K +F G ++ R G ++++ +++ + ++PG +
Sbjct: 21 WFKTHFPGLGFGHLQKLLRSGQIRVDG-----------------GRVKADTRVEPGQMVR 63
Query: 144 VPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPV 203
VP + K+ ++ +G N + L +++I++D + V NKP L V+G V
Sbjct: 64 VP----PLEVDKKGESALTGHSIRNQGDADVLAKMLIHEDPKVFVFNKPAGLAVQGGSGV 119
Query: 204 HNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKSSC 263
++D S E P+LVHRLD+++SG+L+ RT+ + L F
Sbjct: 120 TRNVDDMLEAWRSQK-GEKPRLVHRLDRDTSGVLVVARTRLAAMKLSEAFR--------- 169
Query: 264 KAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEA 323
T + YWALV G P ++E I L K DG +RV +A H + A
Sbjct: 170 ------ARETKKTYWALVKGVPPKREDKISTWLIKEATPDG--DRVRIAAHGE-KGADHA 220
Query: 324 VTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKY 370
V+ YR++ +W+E+ P T R HQLRVH A +G PI+GD KY
Sbjct: 221 VSYYRIIEQAAQTMTWLEMEPYTGRTHQLRVHAAH-IGCPIIGDPKY 266
>J2WGA5_9RHIZ (tr|J2WGA5) Pseudouridine synthase OS=Rhizobium sp. AP16
GN=PMI03_03786 PE=3 SV=1
Length = 317
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 88/295 (29%), Positives = 135/295 (45%), Gaps = 43/295 (14%)
Query: 84 WIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKPMRKMR--PNDVMKPGAR 141
W K +F G ++ R G V+++ + D R++P + +R P DV G +
Sbjct: 6 WFKVHFPGLGFGQLQKLMRSGQVRVDG-----GRVKTDARVQPGQVVRVPPLDVDAKGPK 60
Query: 142 LHVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNL 201
P+ + + S D L R+++++D + VLNKP L V+G
Sbjct: 61 -SGPIGNKDMKHSSDAD---------------LLARMLLHEDEKVFVLNKPAGLAVQGGS 104
Query: 202 PVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKS 261
+ +D S E P+LVHRLD+++SG+L+ RT+ + L F ++ K+
Sbjct: 105 GLTRHLDKMLEAWTSK-KGEKPRLVHRLDRDTSGVLVVARTRGAAQKLTAAFRERDTKKT 163
Query: 262 SCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQ 321
YW+LV G P + E I L K DG +R+ +A H +
Sbjct: 164 ---------------YWSLVKGVPRKHEDKISTWLVKEATADG--DRMRIAKHGE-DGAD 205
Query: 322 EAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVHN 376
A+T YRVL +W+E+ P T R HQLRVH +G PI+GD KY HN
Sbjct: 206 HAITYYRVLETAAQSLAWLEMEPYTGRTHQLRVHALH-MGHPIIGDPKYFDDDHN 259
>H0SIR2_9BRAD (tr|H0SIR2) Pseudouridine synthase OS=Bradyrhizobium sp. ORS 375
GN=BRAO375_3060005 PE=3 SV=1
Length = 332
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 104/199 (52%), Gaps = 20/199 (10%)
Query: 172 IKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDK 231
++ L+ + +Y+D ++VLNKP L V+G + +D + P+LVHR+D+
Sbjct: 88 LESLKAMTLYEDDDVLVLNKPAGLAVQGGSGMTRHIDQMLEVMRD-SKGQKPRLVHRIDR 146
Query: 232 ESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGI 291
E+SG LL +T+ + +HL F + ++ K YWALV G P K+G
Sbjct: 147 ETSGCLLIAKTRFAATHLTGAFRSRSARKI---------------YWALVAGVPKPKQGR 191
Query: 292 IHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQ 351
I L+K ++G+ + +M E AVT Y V+ N +WV L+P+T R HQ
Sbjct: 192 ISTYLAK---DEGEDDTIMRVAAHGDEGASHAVTYYAVVEASANKLAWVSLKPVTGRTHQ 248
Query: 352 LRVHCAEALGTPIVGDYKY 370
LR H A +G PIVGD KY
Sbjct: 249 LRAHMAH-IGHPIVGDPKY 266
>B9JFK3_AGRRK (tr|B9JFK3) Pseudouridine synthase OS=Agrobacterium radiobacter
(strain K84 / ATCC BAA-868) GN=rluC PE=3 SV=1
Length = 332
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 88/295 (29%), Positives = 135/295 (45%), Gaps = 43/295 (14%)
Query: 84 WIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKPMRKMR--PNDVMKPGAR 141
W K +F G ++ R G V+++ + D R++P + +R P DV G +
Sbjct: 21 WFKVHFPGLGFGQLQKLMRSGQVRVDG-----GRVKTDARVQPGQIVRVPPLDVDAKGPK 75
Query: 142 LHVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNL 201
P+ + + S D L R+++++D + VLNKP L V+G
Sbjct: 76 -SGPIGNKDMKHSSDAD---------------LLARMLLHEDEKVFVLNKPAGLAVQGGS 119
Query: 202 PVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKS 261
+ +D S E P+LVHRLD+++SG+L+ RT+ + L F ++ K+
Sbjct: 120 GLTRHLDKMLEAWTSK-KGEKPRLVHRLDRDTSGVLVVARTRGAAQKLTAAFRERDTKKT 178
Query: 262 SCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQ 321
YW+LV G P + E I L K DG +R+ +A H +
Sbjct: 179 ---------------YWSLVKGVPRKHEDKISTWLVKEATADG--DRMRIAKHGE-DGAD 220
Query: 322 EAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVHN 376
A+T YRVL +W+E+ P T R HQLRVH +G PI+GD KY HN
Sbjct: 221 HAITYYRVLETAAQSLAWLEMEPYTGRTHQLRVHALH-MGHPIIGDPKYFDDDHN 274
>F4QZF1_BREDI (tr|F4QZF1) Pseudouridine synthase OS=Brevundimonas diminuta ATCC
11568 GN=BDIM_08470 PE=3 SV=1
Length = 331
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 82/249 (32%), Positives = 119/249 (47%), Gaps = 39/249 (15%)
Query: 129 KMRPNDVMKPGARLHVPVSMAETRISKRYDAIPS--GTLYPNAD-EIKYLQRLVIYKDSA 185
+++P D + GA + VP DA P G L+ ++ +I Y + LV+Y+D
Sbjct: 50 RVKPQDRLTAGAAVRVP---------PLPDANPRKPGDLHELSERDIAYAKSLVLYEDHM 100
Query: 186 IIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEG---PKLVHRLDKESSGILLFGRT 242
+I LNKP L V+G +D + EG P+LVHRLD+++SG+LL G+
Sbjct: 101 VIALNKPHGLAVQGGTKTTKHIDRLLSA-----WGEGMDRPRLVHRLDRDTSGVLLLGKG 155
Query: 243 KDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLN 302
++ L F+ + K+ YWA+VIG P G I L K +N
Sbjct: 156 PEAAKRLAGAFARRQAKKT---------------YWAIVIGNPKPSAGQIDMALKKTGIN 200
Query: 303 DGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGT 362
D + R EP A T + + + +W+ LRP T R HQLR H A A+G
Sbjct: 201 DFEMMRPAEPKDPKGEP---AETAFATISRAAHRAAWMALRPFTGRTHQLRAHMA-AIGH 256
Query: 363 PIVGDYKYG 371
PI+GD KYG
Sbjct: 257 PILGDPKYG 265
>E6YZV3_BARSR (tr|E6YZV3) Pseudouridine synthase OS=Bartonella schoenbuchensis
(strain DSM 13525 / NCTC 13165 / R1) GN=rluC PE=3 SV=1
Length = 326
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 90/311 (28%), Positives = 143/311 (45%), Gaps = 49/311 (15%)
Query: 70 GASGQQRDHVTAVNWIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKPMRK 129
G SG + D W K ++ G ++ R G ++++ R+
Sbjct: 11 GESGMRLD-----RWFKVHYPGLAFGYLQKLLRSGQIRVDG-----------------RR 48
Query: 130 MRPNDVMKPGARLHVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVL 189
++ + + G + VP + +K+ ++ T++ A ++ L+++++YKD I VL
Sbjct: 49 VKTDIRLIVGQSIRVPFLSVD---NKKNLSVTDKTIHDQA-KLAILEKMLLYKDPKIFVL 104
Query: 190 NKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHL 249
NKP L V+G + +D + E P+LVHRLD+E+SG+L+ R++ + L
Sbjct: 105 NKPAGLAVQGGSGLTCHIDGMLEVWRNKK-GEKPRLVHRLDRETSGVLIIARSRGAAQAL 163
Query: 250 QWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERV 309
F T + YWALV G P +K+ I + K G RV
Sbjct: 164 TAAFR---------------ARETKKTYWALVRGVPRKKQDKISTWMVKETTAQGDKMRV 208
Query: 310 MLAHHSTIEP-RQEAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDY 368
H EP AV+ YRVL + SW+E+ P T R HQLRVH A + PI+GD
Sbjct: 209 --CEHG--EPDSNHAVSYYRVLDTRGRALSWLEMEPYTGRTHQLRVHAA-YMDHPIIGDS 263
Query: 369 KYGWFVHNRWK 379
KY +F N W+
Sbjct: 264 KY-FFSDNNWE 273
>A4YWT8_BRASO (tr|A4YWT8) Pseudouridine synthase OS=Bradyrhizobium sp. (strain
ORS278) GN=BRADO4632 PE=3 SV=1
Length = 458
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 103/199 (51%), Gaps = 20/199 (10%)
Query: 172 IKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDK 231
+ L+ + +Y+D ++VLNKP L V+G + +D + P+LVHR+D+
Sbjct: 214 LDSLKAMTLYEDDDVLVLNKPAGLAVQGGSGMTRHIDQMLEVMRDAK-GQKPRLVHRIDR 272
Query: 232 ESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGI 291
E+SG LL +T+ + +HL F + ++ K YWALV G P K+G
Sbjct: 273 ETSGCLLIAKTRFAATHLTGAFRHRSARKV---------------YWALVAGVPKPKQGR 317
Query: 292 IHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQ 351
I L+K ++G+ + +M E AVT Y V+ N +WV L+P+T R HQ
Sbjct: 318 ISTYLAK---DEGEDDTIMRVAAHGDEGASHAVTYYAVVEASANKLAWVSLKPVTGRTHQ 374
Query: 352 LRVHCAEALGTPIVGDYKY 370
LR H A +G PIVGD KY
Sbjct: 375 LRAHMAH-IGHPIVGDPKY 392
>D0D5C9_9RHOB (tr|D0D5C9) Pseudouridine synthase OS=Citreicella sp. SE45
GN=CSE45_0436 PE=3 SV=1
Length = 351
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/210 (37%), Positives = 105/210 (50%), Gaps = 30/210 (14%)
Query: 171 EIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLD 230
+ K +Q VI+KD II LNKPP LPV+G +D + DE P+LVHRLD
Sbjct: 89 DTKLIQDAVIWKDDHIIALNKPPGLPVQGGSKTTRHVDGLSEAL-RFGLDEKPRLVHRLD 147
Query: 231 KESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEG 290
K++SG+LL RT+ Q L + I + T + YWA+V G P G
Sbjct: 148 KDTSGVLLLARTRAVA---QALTAAIRHKQ------------TRKIYWAVVAGVPTPYLG 192
Query: 291 IIHAPLSKV--LLNDGKTERVMLAHHSTIEPRQEA-------VTEYRVLGPKINGCSWVE 341
I L K + G+ E+++ H ++ + A T YRV G SWV
Sbjct: 193 EIRYALVKAPGHGSSGEGEKMICVHPRDVDRTEGAKRAHTLYATLYRVAGR----ASWVA 248
Query: 342 LRPLTSRKHQLRVHCAEALGTPIVGDYKYG 371
L P+T R HQLR H AE +G PI+GD KYG
Sbjct: 249 LEPITGRTHQLRAHMAE-IGHPIIGDGKYG 277
>Q0FAA8_9RHOB (tr|Q0FAA8) Pseudouridine synthase OS=Rhodobacterales bacterium
HTCC2255 GN=OM2255_07780 PE=3 SV=1
Length = 348
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 102/206 (49%), Gaps = 22/206 (10%)
Query: 171 EIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLD 230
+ + ++ V+YKD II +NKP L V+G +D +D + PKLVHRLD
Sbjct: 86 DAQMIRDAVLYKDDYIIAINKPAGLAVQGGSGQMRHVDGLSAAL-KFDLENKPKLVHRLD 144
Query: 231 KESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEG 290
K++SG+LL RT + S L F + T + YWA V G P+ K G
Sbjct: 145 KDTSGVLLLARTGLAASGLTKAFQS---------------RETRKIYWAAVAGCPHPKIG 189
Query: 291 IIHAPLSKVLLN--DGKTERVMLAHHSTIE---PRQEAVTEYRVLGPKINGCSWVELRPL 345
I L K + +G E++ H S + + A T+Y VL SWV L P+
Sbjct: 190 TIKYGLIKAGGHGPNGSGEKMQCIHPSEVTDMPDAKHATTDYTVLEDVGKRASWVALVPI 249
Query: 346 TSRKHQLRVHCAEALGTPIVGDYKYG 371
T R HQLR H AE LG PIVGD KYG
Sbjct: 250 TGRTHQLRAHMAE-LGNPIVGDGKYG 274
>K0PPF8_9RHIZ (tr|K0PPF8) Pseudouridine synthase OS=Rhizobium mesoamericanum
STM3625 GN=BN77_2934 PE=3 SV=1
Length = 330
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 89/289 (30%), Positives = 134/289 (46%), Gaps = 45/289 (15%)
Query: 84 WIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKPMRKMR--PNDVMKPGAR 141
W K +F G ++ R G V+++ + D R++P + +R P DV K
Sbjct: 21 WFKVHFPGLGFGPLQKLLRSGQVRIDG-----GRVKSDTRVQPGQMVRVPPLDVDK---- 71
Query: 142 LHVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNL 201
+ I S L + D + L R+V+++D +IVLNKP L V+G
Sbjct: 72 -------------VKTGPIASRDLKHSGD-FELLSRMVLHEDDKVIVLNKPAGLAVQGGS 117
Query: 202 PVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKS 261
V +D S E P+LVHRLD+++SG+L+ RT+ + L F ++ K+
Sbjct: 118 GVTRHIDKMLEAWTSA-KGEKPRLVHRLDRDTSGVLVVARTRGAAQKLTAAFRERDTKKT 176
Query: 262 SCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQ 321
YW+LV G P + E I L K DG +R+ +A H +
Sbjct: 177 ---------------YWSLVKGVPRKHEDKISTWLVKEATPDG--DRMRIAKHGE-DGAD 218
Query: 322 EAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKY 370
AV+ YRV+ +W+E+ P T R HQLRVH +G PI+GD KY
Sbjct: 219 HAVSYYRVIETAAQRLAWLEMEPYTGRTHQLRVHALH-IGHPIIGDPKY 266
>A1USS6_BARBK (tr|A1USS6) Pseudouridine synthase OS=Bartonella bacilliformis
(strain ATCC 35685 / KC583) GN=BARBAKC583_0730 PE=3 SV=1
Length = 327
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 86/296 (29%), Positives = 135/296 (45%), Gaps = 42/296 (14%)
Query: 84 WIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKPMRKMRPNDVMKPGARLH 143
W K ++ G ++ R G V+++ +++ N + G +
Sbjct: 21 WFKVHYPGLGFGYLQKILRSGQVRVDG-----------------GRVKANMRLVTGQSIR 63
Query: 144 VPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPV 203
VP E SKR +I S + D+ L+++++Y+D I V NKP L V+G +
Sbjct: 64 VPSFFIE---SKRNISITSKVI-SQQDDGDLLKKMLLYEDPKIFVFNKPAGLAVQGGSGL 119
Query: 204 HNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKSSC 263
+D + E P+LVHRLD+E+SG+L+ R++ + L F K
Sbjct: 120 TRHVDGMLEAWRNKK-GEKPRLVHRLDRETSGLLVVARSRSAAQALTAAFRTREMKKI-- 176
Query: 264 KAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEA 323
YWALV G P +K+ I ++K G RV H ++ A
Sbjct: 177 -------------YWALVRGVPRKKQEKISTWMAKETTAQGDKMRV--CEHGELDA-NHA 220
Query: 324 VTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVHNRWK 379
V+ YR+L + SW+E+ P T R HQLRVH A +G PI+GD KY +F + W+
Sbjct: 221 VSYYRILDTRARALSWLEMEPYTGRTHQLRVH-ASHIGHPIIGDSKY-FFSDSNWE 274
>K8Q0Q8_BARBA (tr|K8Q0Q8) Pseudouridine synthase OS=Bartonella bacilliformis INS
GN=BbINS_03447 PE=3 SV=1
Length = 327
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 86/296 (29%), Positives = 135/296 (45%), Gaps = 42/296 (14%)
Query: 84 WIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKPMRKMRPNDVMKPGARLH 143
W K ++ G ++ R G V+++ +++ N + G +
Sbjct: 21 WFKVHYPGLGFGYLQKILRSGQVRVDG-----------------GRVKANMRLVTGQSIR 63
Query: 144 VPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPV 203
VP E SKR +I S + D+ L+++++Y+D I V NKP L V+G +
Sbjct: 64 VPSFFIE---SKRNISITSKVI-SQQDDGDLLKKMLLYEDPKIFVFNKPAGLAVQGGSGL 119
Query: 204 HNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKSSC 263
+D + E P+LVHRLD+E+SG+L+ R++ + L F K
Sbjct: 120 TRHVDGMLEAWRNKK-GEKPRLVHRLDRETSGLLVVARSRSAAQALTAAFRTREMKKI-- 176
Query: 264 KAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEA 323
YWALV G P +K+ I ++K G RV H ++ A
Sbjct: 177 -------------YWALVRGVPRKKQEKISTWMAKETTAQGDKMRV--CEHGELDA-NHA 220
Query: 324 VTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVHNRWK 379
V+ YR+L + SW+E+ P T R HQLRVH A +G PI+GD KY +F + W+
Sbjct: 221 VSYYRILDTRARALSWLEMEPYTGRTHQLRVH-ASHIGHPIIGDSKY-FFSDSNWE 274
>A5ELJ1_BRASB (tr|A5ELJ1) Pseudouridine synthase OS=Bradyrhizobium sp. (strain
BTAi1 / ATCC BAA-1182) GN=BBta_5034 PE=3 SV=1
Length = 458
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 104/199 (52%), Gaps = 20/199 (10%)
Query: 172 IKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDK 231
++ L+ + +Y+D ++VLNKP L V+G + +D + P+LVHR+D+
Sbjct: 214 LESLKAMTLYEDDDVLVLNKPVGLAVQGGSGMTRHIDQMLEVMRDAK-GQKPRLVHRIDR 272
Query: 232 ESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGI 291
E+SG LL +T+ + +HL F + ++ K YWALV G P K+G
Sbjct: 273 ETSGCLLIAKTRFAATHLTGAFRSRSARKI---------------YWALVAGVPKPKQGR 317
Query: 292 IHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQ 351
I L+K ++G+ + +M E AVT Y V+ N +WV L+P+T R HQ
Sbjct: 318 ISTYLAK---DEGEDDTIMRVAAHGDEGASHAVTYYAVVEASANKLAWVSLKPVTGRTHQ 374
Query: 352 LRVHCAEALGTPIVGDYKY 370
LR H A +G PIVGD KY
Sbjct: 375 LRAHMAH-IGHPIVGDPKY 392
>I2QTC4_9BRAD (tr|I2QTC4) Pseudouridine synthase OS=Bradyrhizobium sp. WSM1253
GN=Bra1253DRAFT_07981 PE=3 SV=1
Length = 405
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 102/199 (51%), Gaps = 20/199 (10%)
Query: 172 IKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDK 231
+ L+ + IY+D ++VLNKP L V+G + +D + P+LVHR+D+
Sbjct: 161 LAALKEMTIYEDDDVLVLNKPAGLAVQGGSGMTRHIDQMLEVMRD-SKGQKPRLVHRIDR 219
Query: 232 ESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGI 291
E+SG LL +T+ + SHL F + ++ K+ YWALV G P K+G
Sbjct: 220 ETSGCLLVAKTRFAASHLTGAFRSRSARKT---------------YWALVPGLPKPKQGR 264
Query: 292 IHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQ 351
I L+K D R+ A H E AVT Y V+ N +WV L+P+T R HQ
Sbjct: 265 ISTFLAKEESEDDTIMRI--AQHGD-EGASHAVTYYAVVETAGNKLTWVSLKPVTGRTHQ 321
Query: 352 LRVHCAEALGTPIVGDYKY 370
LR H E +G PIVGD KY
Sbjct: 322 LRAHM-EHIGHPIVGDPKY 339
>G3W2E2_SARHA (tr|G3W2E2) Uncharacterized protein (Fragment) OS=Sarcophilus
harrisii GN=RPUSD4 PE=3 SV=1
Length = 302
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 74/226 (32%), Positives = 113/226 (50%), Gaps = 42/226 (18%)
Query: 165 LYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYD---E 221
++PN K L+R ++Y+D I+V+NKP LPV G V + + Y E
Sbjct: 24 VHPNVLS-KALKRGILYQDKNIVVINKPYGLPVHGGPGVKSCITDILPILAKMLYGNKAE 82
Query: 222 GPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALV 281
L HRLDKE++G+++ R K+ +Q LF AK +YWA+
Sbjct: 83 PLHLCHRLDKETTGVMVLAREKEMAHQVQELFKTRQVAK---------------KYWAIC 127
Query: 282 IGTPNEKEGIIHAPLSK-----------------VLLNDGKTERVMLAHHSTIEPRQEAV 324
+G P G+I PL + + +GKT ++ H+ + AV
Sbjct: 128 VGVPMHSAGMIDIPLIEKEVQGQQQHHKMTLAPSYRMENGKTMKIRPNRHAHV-----AV 182
Query: 325 TEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKY 370
T+Y+VL ++ CS++EL+P+T KHQLRVH A LG P++GD+KY
Sbjct: 183 TQYQVLSRTLS-CSFLELQPITGVKHQLRVHLAFGLGCPVLGDHKY 227
>A3UD63_9RHOB (tr|A3UD63) Pseudouridine synthase OS=Oceanicaulis sp. HTCC2633
GN=OA2633_03431 PE=3 SV=1
Length = 325
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 101/200 (50%), Gaps = 21/200 (10%)
Query: 171 EIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLD 230
+ ++ + LVIY+D +I LNKPP L V+G V +D D + P+LVHRLD
Sbjct: 83 DAQFARSLVIYEDKQMIALNKPPGLAVQGGSKVTMHLDHLLQAFGKGD--QKPRLVHRLD 140
Query: 231 KESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEG 290
K++SG+L+ +T S L LF + K+ YWA+ +G P + G
Sbjct: 141 KDTSGVLVVAKTAQSAKRLARLFQTRDVKKT---------------YWAICLGLPAPRAG 185
Query: 291 IIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKH 350
I + K + +G E ++ A H E Q A+T Y V SWV LRP T R H
Sbjct: 186 EIKGFMKKSM--EGDRELMVGARHGE-EGAQHALTRYAVADNAGARASWVVLRPETGRTH 242
Query: 351 QLRVHCAEALGTPIVGDYKY 370
QLRVH +A+G I GD KY
Sbjct: 243 QLRVHM-QAMGHSIYGDGKY 261
>G4RC09_PELHB (tr|G4RC09) Pseudouridine synthase OS=Pelagibacterium halotolerans
(strain JCM 15775 / CGMCC 1.7692 / B2) GN=KKY_1641 PE=3
SV=1
Length = 333
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 108/203 (53%), Gaps = 20/203 (9%)
Query: 168 NADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVH 227
N + +L+ L++Y+D + V NKP L V+G +D + E P+LVH
Sbjct: 81 NQKDADFLRDLILYEDDDVYVFNKPHGLAVQGGSGTKRHIDGMLKSLPNKK-GEPPRLVH 139
Query: 228 RLDKESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNE 287
RLD+++SG LL +T+ + SH +F + ++ K YWA+ IG P+
Sbjct: 140 RLDRDTSGCLLVAKTRAAASHFGTVFRSRSARKI---------------YWAITIGVPHP 184
Query: 288 KEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTS 347
++G I L++ DG E++++ + T E Q +V+ Y V N +WV L+P+T
Sbjct: 185 RQGRISCFLARQSTQDG--EQMVVVENGT-EGAQHSVSYYSVTESAANQFAWVTLKPVTG 241
Query: 348 RKHQLRVHCAEALGTPIVGDYKY 370
R HQLRVH E LGTPI+ D +Y
Sbjct: 242 RTHQLRVHMME-LGTPILDDPRY 263
>H5YJI6_9BRAD (tr|H5YJI6) Pseudouridine synthase OS=Bradyrhizobium sp. WSM471
GN=Bra471DRAFT_04845 PE=3 SV=1
Length = 404
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 102/199 (51%), Gaps = 20/199 (10%)
Query: 172 IKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDK 231
+ L+ + IY+D ++VLNKP L V+G + +D + P+LVHR+D+
Sbjct: 160 LAALKEMTIYEDDDVLVLNKPAGLAVQGGSGMTRHIDQMLEVMRD-SKGQKPRLVHRIDR 218
Query: 232 ESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGI 291
E+SG LL +T+ + SHL F + ++ K+ YWALV G P K+G
Sbjct: 219 ETSGCLLVAKTRFAASHLTGAFRSRSARKT---------------YWALVPGLPKPKQGR 263
Query: 292 IHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQ 351
I L+K D R+ A H E AVT Y V+ N +WV L+P+T R HQ
Sbjct: 264 ISTFLAKEESEDDTIMRI--AQHGD-EGASHAVTYYAVVETAGNKLTWVSLKPVTGRTHQ 320
Query: 352 LRVHCAEALGTPIVGDYKY 370
LR H E +G PIVGD KY
Sbjct: 321 LRAHM-EHIGHPIVGDPKY 338
>K2Q8G0_9RHIZ (tr|K2Q8G0) Pseudouridine synthase OS=Agrobacterium albertimagni
AOL15 GN=QWE_22716 PE=3 SV=1
Length = 329
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 86/295 (29%), Positives = 138/295 (46%), Gaps = 45/295 (15%)
Query: 84 WIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKPMRKMR--PNDVMKPGAR 141
W K ++ G ++ R G V+++ + D R++P + +R P DV
Sbjct: 21 WFKIHYPGLGFGALQKLLRSGQVRVDG-----GRVKTDARVQPGQVVRVPPMDV------ 69
Query: 142 LHVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNL 201
+K+ I S L + D+ + L R+++++D + VLNKP L V+G
Sbjct: 70 -----------DAKKTGPIASHDL-KHGDDHELLSRMLLHEDEKVFVLNKPAGLAVQGGS 117
Query: 202 PVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKS 261
++ +D S E P+LVHRLD+++SG+L+ RT+ + L F ++ K
Sbjct: 118 GLNRHIDKMLEAWTSR-KGEKPRLVHRLDRDTSGVLVVARTRGAAQKLTAAFRERDTKKI 176
Query: 262 SCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQ 321
YW+LV G P + E I L+K ++G +R+ + H +
Sbjct: 177 ---------------YWSLVKGVPRKHEDKISTWLTKDQTDEG--DRMRVCRHGE-DGAD 218
Query: 322 EAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVHN 376
AVT YRV+ +W+E+ P T R HQLRVH +G PI+GD KY HN
Sbjct: 219 HAVTYYRVIDTAAQNLAWLEMEPYTGRTHQLRVHALH-IGHPIIGDPKYFVDDHN 272
>Q1YNH2_MOBAS (tr|Q1YNH2) Pseudouridine synthase OS=Manganese-oxidizing bacterium
(strain SI85-9A1) GN=SI859A1_01866 PE=3 SV=1
Length = 328
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 88/293 (30%), Positives = 134/293 (45%), Gaps = 41/293 (13%)
Query: 84 WIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKPMRKMRPNDVMKPGARLH 143
W K ++ G ++ R G V+++ A + D R++P + +R + R
Sbjct: 21 WFKLHYPGLGFGHLQKLLRSGQVRVDGGRA-----KTDTRVQPGQMVRIPPMSGDAGRPK 75
Query: 144 VPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPV 203
+ A T K D + L +++IY+D + V NKP L V+G +
Sbjct: 76 IGPLTANTMRDKHDDEV--------------LSQMLIYEDEKVFVFNKPAGLAVQGGSGL 121
Query: 204 HNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKSSC 263
+ +D S E P+LVHRLD+++SG+L+ RT+ + + L F ++ K+
Sbjct: 122 NRHVDKMLEAWRSRK-GEKPRLVHRLDRDTSGVLVVARTRGAATALTKAFRERDTKKT-- 178
Query: 264 KAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEA 323
YWA++ G P EG I L K DG +R+ A H E A
Sbjct: 179 -------------YWAILKGVPVPHEGRISTFLVKEQTPDG--DRMRTAKHGE-EGADHA 222
Query: 324 VTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVHN 376
+T YRV+ SWVE+ P T R HQLRVH +G PI+GD KY F H+
Sbjct: 223 LTHYRVIENLAQNFSWVEMEPYTGRTHQLRVHALH-IGNPILGDPKY--FEHD 272
>L0LMG9_RHITR (tr|L0LMG9) Pseudouridine synthase OS=Rhizobium tropici CIAT 899
GN=RTCIAT899_CH09570 PE=3 SV=1
Length = 332
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 85/289 (29%), Positives = 136/289 (47%), Gaps = 43/289 (14%)
Query: 84 WIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKPMRKMR--PNDVMKPGAR 141
W K +F G ++ R G V+++ + D R++P + +R P DV G +
Sbjct: 21 WFKVHFPGLGFGQLQKLLRSGQVRVDG-----GRVKTDARVQPGQVVRVPPLDVDAKGPK 75
Query: 142 LHVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNL 201
P++ + + +A + + L R+++++D + VLNKP L V+G
Sbjct: 76 -SGPIASNDLK---------------HAGDGELLARMLLHEDDKVYVLNKPAGLAVQGGS 119
Query: 202 PVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKS 261
+ +D S E P+LVHRLD+++SG+L+ RT+ + L F ++ K+
Sbjct: 120 GLTRHIDKMLEAWTSKK-GEKPRLVHRLDRDTSGVLVVARTRGAAQKLTAAFRERDTKKT 178
Query: 262 SCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQ 321
YW+LV G P + E I L K DG +R+ +A H E
Sbjct: 179 ---------------YWSLVKGVPRKHEDKISTWLVKEATADG--DRMRIAKHGE-EGAD 220
Query: 322 EAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKY 370
A++ YRVL +W+E+ P T R HQLRVH +G PI+GD KY
Sbjct: 221 HAISYYRVLETAAQSLAWLEMEPYTGRTHQLRVHALH-MGHPIIGDPKY 268
>C3MB12_RHISN (tr|C3MB12) Pseudouridine synthase OS=Rhizobium sp. (strain NGR234)
GN=rluC PE=3 SV=1
Length = 330
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 83/287 (28%), Positives = 136/287 (47%), Gaps = 39/287 (13%)
Query: 84 WIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKPMRKMRPNDVMKPGARLH 143
W K ++ G ++ R G ++++ A + D R++P + +R
Sbjct: 21 WFKVHYPGLGFGPLQKLLRSGQIRVDGARA-----KSDTRVQPGQTIR------------ 63
Query: 144 VPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPV 203
VP + + +K G ++ + L R+V+++D+ +IVLNKP L V+G V
Sbjct: 64 VPPLGVDAKDTK--TGPIGGRDLRHSSDGDLLSRMVLHEDAKVIVLNKPAGLAVQGGSGV 121
Query: 204 HNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKSSC 263
+D S E P+LVHRLD+++SG+L+ RT+ + L F ++ K
Sbjct: 122 SRHIDKMLEAWTSQ-KGEKPRLVHRLDRDTSGVLVIARTRGAAQQLTAAFRERDTRKI-- 178
Query: 264 KAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEA 323
YW+LV G P ++E I L K DG +R+ +A H + A
Sbjct: 179 -------------YWSLVKGVPRKREDRISTWLVKEQTPDG--DRMRIAKHGD-DGADHA 222
Query: 324 VTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKY 370
++ YR++ +W+E+ P T R HQLRVH A +G PI+GD KY
Sbjct: 223 ISYYRIVEQAGQNLAWLEMEPYTGRTHQLRVHAAH-IGHPIIGDPKY 268
>R5YM70_9PROT (tr|R5YM70) Pseudouridine synthase OS=Acetobacter sp. CAG:267
GN=BN575_00318 PE=4 SV=1
Length = 309
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 76/216 (35%), Positives = 108/216 (50%), Gaps = 36/216 (16%)
Query: 168 NADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVH 227
+A + ++++ +VIYKD +IVLNKP L V+G +D +D DE PKLVH
Sbjct: 80 SAYDARFIEDMVIYKDDNLIVLNKPSGLAVQGGTNTQRHIDGMLDAL-KFDNDERPKLVH 138
Query: 228 RLDKESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNE 287
R+DK++SG+L+ R + + L F K+ Y ALV G P +
Sbjct: 139 RIDKDTSGVLVLARNRKTADLLTKAFREHTLKKT---------------YLALVRGVPAK 183
Query: 288 KEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTS 347
+ G I APL K DG+ + +E + AVTEY+VL + + + PLT
Sbjct: 184 EYGEIKAPLEKA---DGRVQ--------VLEGGKPAVTEYQVLDCVGDKYALLAASPLTG 232
Query: 348 RKHQLRVHCAEALGTPIVGDYKY--------GWFVH 375
R HQ+R H E + TPI+GD KY G FVH
Sbjct: 233 RTHQIRAHL-EFIRTPILGDGKYFGTEREKSGMFVH 267
>C6XLD6_HIRBI (tr|C6XLD6) Pseudouridine synthase OS=Hirschia baltica (strain ATCC
49814 / DSM 5838 / IFAM 1418) GN=Hbal_2052 PE=3 SV=1
Length = 343
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 92/323 (28%), Positives = 141/323 (43%), Gaps = 49/323 (15%)
Query: 73 GQQRDHVTAVNWIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKPMRKMRP 132
G V W+K F G +E RKG V+++ A S
Sbjct: 14 GDTEGDVRLDRWLKRRFPGLTQGQVEKLLRKGEVRVDGSRAKSSTR-------------- 59
Query: 133 NDVMKPGARLHVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKP 192
++PG + VP M T K++ +Y + + + +Q L++Y+D + VLNKP
Sbjct: 60 ---LEPGQVVRVP-PMPSTDQGKKHPQKEE-EVYVSPRDAELIQSLILYEDEDVYVLNKP 114
Query: 193 PKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWL 252
L V+G +D D+ P+LVHRLDK++SG+L+ +T S + +
Sbjct: 115 SGLAVQGGTKTLRHVDGMANALTRPGQDK-PRLVHRLDKDTSGLLVLAKTAQSAAEMSKH 173
Query: 253 FSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLA 312
F + K YWA+V G PN EG + + K G+ + +M A
Sbjct: 174 FRSRELDKI---------------YWAVVKGVPNPNEGELRGWMMKAH-GPGQDKELMTA 217
Query: 313 HHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKY-- 370
+ A+T+++V+ SWV L+P T RKHQLR H +E +G I+GD KY
Sbjct: 218 GVHGQKGAVFAITDFKVVSTAGQRASWVALKPSTGRKHQLRYHMSE-IGNSILGDAKYTC 276
Query: 371 ----------GWFVHNRWKQMPR 383
G +H R +MPR
Sbjct: 277 DRETPAGLPPGLHLHARALRMPR 299
>B4WEA2_9CAUL (tr|B4WEA2) Pseudouridine synthase OS=Brevundimonas sp. BAL3
GN=BBAL3_2289 PE=3 SV=1
Length = 341
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 119/247 (48%), Gaps = 35/247 (14%)
Query: 129 KMRPNDVMKPGARLHVPVSMAETRISKRYDAIPSGTLYPNAD-EIKYLQRLVIYKDSAII 187
+++P + GA + VP +T + +G L+ ++ +I + + LV+Y+D +I
Sbjct: 60 RIKPEGRLTAGAAVRVPPIPDDT-------SRQAGDLHTLSERDIAFAKSLVLYEDDMVI 112
Query: 188 VLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEG---PKLVHRLDKESSGILLFGRTKD 244
+NKP L V+G +D + EG P+LVHRLD+++SG+LL G+ +
Sbjct: 113 AINKPHGLAVQGGTKTSRHVDRLLSA-----WGEGMDRPRLVHRLDRDTSGVLLLGKGPE 167
Query: 245 SVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDG 304
+ L F+ + K+ YWA+VIG P G I PL K +ND
Sbjct: 168 AAKRLAGAFARRQAKKT---------------YWAIVIGNPKPYSGQIDMPLKKTGINDF 212
Query: 305 KTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPI 364
+ R EP A T + + + +W+ LRP T R HQLR H A +G PI
Sbjct: 213 EMMRPADRKDPKAEP---AETAFSTISRASHRAAWMALRPFTGRTHQLRAHMA-GIGHPI 268
Query: 365 VGDYKYG 371
+GD KYG
Sbjct: 269 LGDPKYG 275
>J2HFJ7_9RHIZ (tr|J2HFJ7) Pseudouridine synthase OS=Rhizobium sp. CF080
GN=PMI07_06604 PE=3 SV=1
Length = 331
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 85/293 (29%), Positives = 133/293 (45%), Gaps = 41/293 (13%)
Query: 84 WIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKPMRKMRPNDVMKPGARLH 143
W K ++ G ++ R G V+++ + D R++P + +R
Sbjct: 21 WFKIHYPGLGFGPLQKLLRSGQVRVDG-----GRVKSDARVQPGQTVR------------ 63
Query: 144 VPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPV 203
+ + + +G ++ + + L R+V+++D +IVLNKP L V+G V
Sbjct: 64 ----IPPMEVDAKKTGPIAGKDLKHSSDFELLSRMVLHEDEKVIVLNKPAGLAVQGGSGV 119
Query: 204 HNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKSSC 263
+D S E P+LVHRLD+++SG+L+ RT+ + L F ++ K+
Sbjct: 120 ARHIDQMLDSWVS-PKGEKPRLVHRLDRDTSGVLVIARTRGAAQKLTAAFRERDTKKT-- 176
Query: 264 KAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEA 323
YWALV G P + E I L K DG +R+ +A H + A
Sbjct: 177 -------------YWALVKGVPRKHEDKISTWLVKEQTPDG--DRMRIAKHGE-DGADHA 220
Query: 324 VTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVHN 376
V+ YRVL W+E+ P T R HQLRVH +G PI+GD KY HN
Sbjct: 221 VSYYRVLEMAAQTLCWMEMEPYTGRTHQLRVHALH-IGHPIIGDPKYFDDDHN 272
>A3SK10_9RHOB (tr|A3SK10) Pseudouridine synthase OS=Roseovarius nubinhibens ISM
GN=ISM_05340 PE=3 SV=1
Length = 346
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 75/210 (35%), Positives = 102/210 (48%), Gaps = 28/210 (13%)
Query: 170 DEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRL 229
++ ++ VIY+D II LNKPP LPV+G +D +D DE P+LVHRL
Sbjct: 83 EDAAMIRAAVIYRDDHIIALNKPPGLPVQGGSKQTRHVDGLAEAL-RFDLDEKPRLVHRL 141
Query: 230 DKESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKE 289
DK++SG+L+ RT+ + L F + N+ K YWA V G P +
Sbjct: 142 DKDTSGVLILARTRQMAADLTAAFRHRNTRKI---------------YWAAVAGVPLPRM 186
Query: 290 GIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQ--------EAVTEYRVLGPKINGCSWVE 341
G + L K + E + I PR+ A ++Y VL +W+
Sbjct: 187 GTVKYGLVKAPGHGKGGEGEKML---CIHPREVDNTPGAKHATSDYAVLENAGQRTAWMA 243
Query: 342 LRPLTSRKHQLRVHCAEALGTPIVGDYKYG 371
L P+T R HQLR H AE LG PIVGD KYG
Sbjct: 244 LVPVTGRTHQLRAHMAE-LGHPIVGDGKYG 272
>M5F8G2_9RHIZ (tr|M5F8G2) Pseudouridine synthase OS=Mesorhizobium sp. STM 4661
GN=MESS4_580035 PE=4 SV=1
Length = 326
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 82/287 (28%), Positives = 134/287 (46%), Gaps = 41/287 (14%)
Query: 84 WIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKPMRKMRPNDVMKPGARLH 143
W K +F G ++ R G ++++ +++ + ++PG +
Sbjct: 21 WFKTHFPGLGFGHLQKLLRSGQIRVDG-----------------GRVKADTRVEPGQMVR 63
Query: 144 VPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPV 203
VP + K+ ++ +G N + L +++I++D + V NKP L V+G V
Sbjct: 64 VP----PLEVDKKGESPLTGHSIRNQGDADVLAKMLIHEDPKVFVFNKPAGLAVQGGSGV 119
Query: 204 HNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKSSC 263
++D + E P+LVHRLD+++SG+L+ RT+ + L F
Sbjct: 120 TRNVDDMLEAWRNQK-GEKPRLVHRLDRDTSGVLVVARTRLAAMKLSEAFR--------- 169
Query: 264 KAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEA 323
T + YWALV G P ++E I L K +DG +RV +A H + A
Sbjct: 170 ------ARETKKTYWALVKGVPPKREDKISTWLIKEPTSDG--DRVRVAAHGE-KGADHA 220
Query: 324 VTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKY 370
V+ YRV+ +W+E+ P T R HQLRVH A +G PI+GD KY
Sbjct: 221 VSYYRVIEQAAQTMTWLEMEPYTGRTHQLRVHAAH-IGCPIIGDPKY 266
>I0G5T6_9BRAD (tr|I0G5T6) Pseudouridine synthase OS=Bradyrhizobium sp. S23321
GN=S23_29150 PE=3 SV=1
Length = 406
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 103/199 (51%), Gaps = 20/199 (10%)
Query: 172 IKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDK 231
+K L+ + IY+D ++VLNKP L V+G + +D + P+LVHR+D+
Sbjct: 162 LKALKEMTIYEDDDVLVLNKPAGLAVQGGSGMTRHIDQMLEVMRD-SKGQKPRLVHRIDR 220
Query: 232 ESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGI 291
E+SG LL +T+ + S+L F + ++ K+ YWALV G P K+G
Sbjct: 221 ETSGCLLIAKTRFAASYLTGEFRSRSARKT---------------YWALVPGLPKPKQGR 265
Query: 292 IHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQ 351
I L+K D R+ A H E AVT Y V+ N +WV L+P+T R HQ
Sbjct: 266 ISTFLAKEESEDDTIMRI--AQHGD-EGASHAVTYYAVVETAGNKLTWVSLKPVTGRTHQ 322
Query: 352 LRVHCAEALGTPIVGDYKY 370
LR H A +G PIVGD KY
Sbjct: 323 LRAHMAH-IGHPIVGDPKY 340