Miyakogusa Predicted Gene
- Lj0g3v0302969.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0302969.1 Non Chatacterized Hit- tr|K3Y7Y3|K3Y7Y3_SETIT
Uncharacterized protein OS=Setaria italica GN=Si010324,36.84,2e-19,no
description,Pseudouridine synthase I, TruA,
C-terminal,gene.g23583.t1.1
(135 letters)
Database: trembl
41,451,118 sequences; 13,208,986,710 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
C6TAR7_SOYBN (tr|C6TAR7) tRNA pseudouridine synthase OS=Glycine ... 164 7e-39
I1MJV5_SOYBN (tr|I1MJV5) tRNA pseudouridine synthase OS=Glycine ... 164 8e-39
K7LVD1_SOYBN (tr|K7LVD1) tRNA pseudouridine synthase OS=Glycine ... 162 3e-38
K7LVD0_SOYBN (tr|K7LVD0) tRNA pseudouridine synthase OS=Glycine ... 162 3e-38
M5XVU6_PRUPE (tr|M5XVU6) Uncharacterized protein (Fragment) OS=P... 144 1e-32
D7TGT5_VITVI (tr|D7TGT5) tRNA pseudouridine synthase OS=Vitis vi... 137 1e-30
Q1SKV8_MEDTR (tr|Q1SKV8) tRNA pseudouridine synthase OS=Medicago... 137 2e-30
G7IN91_MEDTR (tr|G7IN91) tRNA pseudouridine synthase OS=Medicago... 132 5e-29
M4DTZ7_BRARP (tr|M4DTZ7) Uncharacterized protein OS=Brassica rap... 131 1e-28
K7LVC9_SOYBN (tr|K7LVC9) tRNA pseudouridine synthase OS=Glycine ... 127 2e-27
M0TYJ7_MUSAM (tr|M0TYJ7) tRNA pseudouridine synthase OS=Musa acu... 121 9e-26
B9SKD4_RICCO (tr|B9SKD4) tRNA pseudouridine synthase OS=Ricinus ... 117 2e-24
B9N771_POPTR (tr|B9N771) tRNA pseudouridine synthase OS=Populus ... 117 2e-24
Q67XY0_ARATH (tr|Q67XY0) tRNA pseudouridine synthase (Fragment) ... 115 4e-24
Q6NKP7_ARATH (tr|Q6NKP7) tRNA pseudouridine synthase OS=Arabidop... 115 4e-24
F4I2L0_ARATH (tr|F4I2L0) tRNA pseudouridine synthase OS=Arabidop... 115 4e-24
R0GQ47_9BRAS (tr|R0GQ47) Uncharacterized protein OS=Capsella rub... 114 9e-24
K4B1T1_SOLLC (tr|K4B1T1) tRNA pseudouridine synthase OS=Solanum ... 114 1e-23
M8D4H8_AEGTA (tr|M8D4H8) tRNA pseudouridine synthase-like protei... 114 1e-23
M8AB42_TRIUA (tr|M8AB42) tRNA pseudouridine synthase-like 1 OS=T... 114 2e-23
D7KJU5_ARALL (tr|D7KJU5) tRNA pseudouridine synthase OS=Arabidop... 111 1e-22
M1CBM9_SOLTU (tr|M1CBM9) tRNA pseudouridine synthase OS=Solanum ... 110 3e-22
M4ESA6_BRARP (tr|M4ESA6) tRNA pseudouridine synthase OS=Brassica... 109 3e-22
B8BNJ9_ORYSI (tr|B8BNJ9) tRNA pseudouridine synthase OS=Oryza sa... 109 4e-22
Q2QWH9_ORYSJ (tr|Q2QWH9) tRNA pseudouridine synthase OS=Oryza sa... 109 4e-22
I1R4S9_ORYGL (tr|I1R4S9) tRNA pseudouridine synthase OS=Oryza gl... 109 4e-22
J3NC07_ORYBR (tr|J3NC07) tRNA pseudouridine synthase OS=Oryza br... 105 6e-21
M0YBW4_HORVD (tr|M0YBW4) tRNA pseudouridine synthase OS=Hordeum ... 103 2e-20
M0YBX1_HORVD (tr|M0YBX1) tRNA pseudouridine synthase OS=Hordeum ... 103 2e-20
K3Y7Y3_SETIT (tr|K3Y7Y3) tRNA pseudouridine synthase OS=Setaria ... 100 3e-19
C0HIQ3_MAIZE (tr|C0HIQ3) tRNA pseudouridine synthase OS=Zea mays... 100 3e-19
I1ITQ5_BRADI (tr|I1ITQ5) tRNA pseudouridine synthase OS=Brachypo... 99 5e-19
B6SIS1_MAIZE (tr|B6SIS1) tRNA pseudouridine synthase OS=Zea mays... 98 1e-18
C5YTE9_SORBI (tr|C5YTE9) tRNA pseudouridine synthase OS=Sorghum ... 98 1e-18
A9SK13_PHYPA (tr|A9SK13) tRNA pseudouridine synthase OS=Physcomi... 94 2e-17
D8RCZ2_SELML (tr|D8RCZ2) tRNA pseudouridine synthase OS=Selagine... 82 7e-14
D8RSR7_SELML (tr|D8RSR7) tRNA pseudouridine synthase OS=Selagine... 80 2e-13
M0YBW9_HORVD (tr|M0YBW9) tRNA pseudouridine synthase OS=Hordeum ... 80 3e-13
D5AE97_PICSI (tr|D5AE97) tRNA pseudouridine synthase OS=Picea si... 79 5e-13
A4S4E5_OSTLU (tr|A4S4E5) tRNA pseudouridine synthase OS=Ostreoco... 60 2e-07
O04502_ARATH (tr|O04502) F21M12.19 protein OS=Arabidopsis thalia... 59 4e-07
D3NXB2_AZOS1 (tr|D3NXB2) tRNA pseudouridine synthase A OS=Azospi... 59 9e-07
G7Z9Q7_AZOL4 (tr|G7Z9Q7) tRNA pseudouridine synthase A OS=Azospi... 57 2e-06
>C6TAR7_SOYBN (tr|C6TAR7) tRNA pseudouridine synthase OS=Glycine max PE=2 SV=1
Length = 370
Score = 164 bits (416), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 96/177 (54%), Positives = 104/177 (58%), Gaps = 60/177 (33%)
Query: 16 YFYRLLSGPEPLSAFEKERAWHVPEDLNLSAMQ---------------------AKSPIR 54
YFYRLLSGPEPLS FEK+RAWHVPE+L+L AMQ AKSPIR
Sbjct: 172 YFYRLLSGPEPLSTFEKDRAWHVPEELSLPAMQEACRVLVGFHDFSSFRAAGCQAKSPIR 231
Query: 55 TLDELSVSEVIPSPNFPSLMDRERQNKVSGDPQGCHRKSEADIPLT-------------- 100
TLDELSV+EVI SP FPSLMDRE+ NKVSGD + C SE DIP T
Sbjct: 232 TLDELSVNEVIESPYFPSLMDREQHNKVSGDLRSCPNNSETDIPPTSNPSIDKVMASSQD 291
Query: 101 -------------------------VRLLVGVLKAVGTGNLTIPDVERILNAKTVST 132
VRLLVGVLKAVGTGNLTIPDVERILNA+TV+
Sbjct: 292 VGFGKRRRHRCLVVTARARAFLYHQVRLLVGVLKAVGTGNLTIPDVERILNARTVTA 348
>I1MJV5_SOYBN (tr|I1MJV5) tRNA pseudouridine synthase OS=Glycine max PE=3 SV=1
Length = 370
Score = 164 bits (416), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 96/177 (54%), Positives = 104/177 (58%), Gaps = 60/177 (33%)
Query: 16 YFYRLLSGPEPLSAFEKERAWHVPEDLNLSAMQ---------------------AKSPIR 54
YFYRLLSGPEPLS FEK+RAWHVPE+L+L AMQ AKSPIR
Sbjct: 172 YFYRLLSGPEPLSTFEKDRAWHVPEELSLPAMQEACRVLVGFHDFSSFRAAGCQAKSPIR 231
Query: 55 TLDELSVSEVIPSPNFPSLMDRERQNKVSGDPQGCHRKSEADIPLT-------------- 100
TLDELSV+EVI SP FPSLMDRE+ NKVSGD + C SE DIP T
Sbjct: 232 TLDELSVNEVIESPYFPSLMDREQHNKVSGDLRSCPNNSETDIPPTSNPSIDKVMASSQD 291
Query: 101 -------------------------VRLLVGVLKAVGTGNLTIPDVERILNAKTVST 132
VRLLVGVLKAVGTGNLTIPDVERILNA+TV+
Sbjct: 292 VGFGKRRRHRCLVVTARARAFLYHQVRLLVGVLKAVGTGNLTIPDVERILNARTVTA 348
>K7LVD1_SOYBN (tr|K7LVD1) tRNA pseudouridine synthase OS=Glycine max PE=3 SV=1
Length = 368
Score = 162 bits (411), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 95/188 (50%), Positives = 104/188 (55%), Gaps = 60/188 (31%)
Query: 5 WFERLSTISYRYFYRLLSGPEPLSAFEKERAWHVPEDLNLSAMQ---------------- 48
+ R YFYRLLSGPEPLS FEK+RAWHVPE+L+L AMQ
Sbjct: 159 FHARFKAQERTYFYRLLSGPEPLSTFEKDRAWHVPEELSLPAMQEACRVLVGCHDFSSFR 218
Query: 49 -----AKSPIRTLDELSVSEVIPSPNFPSLMDRERQNKVSGDPQGCHRKSEADIP----- 98
AKSPIRTLDELSV+EVI SP FPSLMDRE+ NKVSGD + C +E DIP
Sbjct: 219 AAGCQAKSPIRTLDELSVNEVIESPYFPSLMDREQHNKVSGDLRSCSNNTETDIPPISNP 278
Query: 99 ----------------------------------LTVRLLVGVLKAVGTGNLTIPDVERI 124
VRLLVGVLKA GTGNLTIPDVERI
Sbjct: 279 SIDKVITSSQDAGFGKRRRHRCLVVTARARSFLYHQVRLLVGVLKAAGTGNLTIPDVERI 338
Query: 125 LNAKTVST 132
LNAKTV+
Sbjct: 339 LNAKTVTA 346
>K7LVD0_SOYBN (tr|K7LVD0) tRNA pseudouridine synthase OS=Glycine max PE=3 SV=1
Length = 369
Score = 162 bits (411), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 95/188 (50%), Positives = 104/188 (55%), Gaps = 60/188 (31%)
Query: 5 WFERLSTISYRYFYRLLSGPEPLSAFEKERAWHVPEDLNLSAMQ---------------- 48
+ R YFYRLLSGPEPLS FEK+RAWHVPE+L+L AMQ
Sbjct: 160 FHARFKAQERTYFYRLLSGPEPLSTFEKDRAWHVPEELSLPAMQEACRVLVGCHDFSSFR 219
Query: 49 -----AKSPIRTLDELSVSEVIPSPNFPSLMDRERQNKVSGDPQGCHRKSEADIP----- 98
AKSPIRTLDELSV+EVI SP FPSLMDRE+ NKVSGD + C +E DIP
Sbjct: 220 AAGCQAKSPIRTLDELSVNEVIESPYFPSLMDREQHNKVSGDLRSCSNNTETDIPPISNP 279
Query: 99 ----------------------------------LTVRLLVGVLKAVGTGNLTIPDVERI 124
VRLLVGVLKA GTGNLTIPDVERI
Sbjct: 280 SIDKVITSSQDAGFGKRRRHRCLVVTARARSFLYHQVRLLVGVLKAAGTGNLTIPDVERI 339
Query: 125 LNAKTVST 132
LNAKTV+
Sbjct: 340 LNAKTVTA 347
>M5XVU6_PRUPE (tr|M5XVU6) Uncharacterized protein (Fragment) OS=Prunus persica
GN=PRUPE_ppa007576m1g PE=4 SV=1
Length = 234
Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/169 (50%), Positives = 98/169 (57%), Gaps = 53/169 (31%)
Query: 16 YFYRLLSGPEPLSAFEKERAWHVPEDLNLSAMQ---------------------AKSPIR 54
YFYRLLSG EPLS FEK+RAWHVPE+LNL AMQ AKSPIR
Sbjct: 47 YFYRLLSGAEPLSTFEKDRAWHVPEELNLRAMQEACKVLVGHHDFSSFRAAGCQAKSPIR 106
Query: 55 TLDELSVSEVIPSPNFPSLMDRERQNKVSGDPQGCHRKSEADIPLT-------------- 100
TLDEL+VSEV+ +P FPS+M+R +QN + DP KSE D P +
Sbjct: 107 TLDELNVSEVVSTPCFPSIMER-KQNNLGEDPHAGTNKSETDPPPSFNGGADLGFGLRKK 165
Query: 101 -----------------VRLLVGVLKAVGTGNLTIPDVERILNAKTVST 132
VRLLVGVLKAVGTG+L +PDVERILNAKTV+
Sbjct: 166 HRCFVVTARARAFLYHQVRLLVGVLKAVGTGDLKVPDVERILNAKTVTA 214
>D7TGT5_VITVI (tr|D7TGT5) tRNA pseudouridine synthase OS=Vitis vinifera
GN=VIT_12s0035g00960 PE=3 SV=1
Length = 380
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 82/177 (46%), Positives = 96/177 (54%), Gaps = 60/177 (33%)
Query: 16 YFYRLLSGPEPLSAFEKERAWHVPEDLNLSAMQ---------------------AKSPIR 54
YFYRLLSGPEPLS+FEK+RAWHVPEDL+L AMQ AKSPIR
Sbjct: 184 YFYRLLSGPEPLSSFEKDRAWHVPEDLDLLAMQKACRVLVGCHDFSSFRAAGCQAKSPIR 243
Query: 55 TLDELSVSEVIPSPNFPSLMDRERQNKVSGDPQGCHRKSEA-DIPLT------------- 100
TLDEL VSEV+P+P FPS+ +R + N +P C +E D P T
Sbjct: 244 TLDELCVSEVLPTPYFPSITERAQNNFTEENPLACSNNAEVPDSPSTANHDRLDGFNGAG 303
Query: 101 -------------------------VRLLVGVLKAVGTGNLTIPDVERILNAKTVST 132
VRLLVGV+K VGTG+LT+ DVERILNAKTV+
Sbjct: 304 QGFGVRRRHRCFLVTARARSFLYHQVRLLVGVIKCVGTGDLTVSDVERILNAKTVTA 360
>Q1SKV8_MEDTR (tr|Q1SKV8) tRNA pseudouridine synthase OS=Medicago truncatula
GN=MtrDRAFT_AC140550g32v2 PE=3 SV=2
Length = 361
Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 84/177 (47%), Positives = 93/177 (52%), Gaps = 60/177 (33%)
Query: 16 YFYRLLSGPEPLSAFEKERAWHVPEDLNLSAM---------------------QAKSPIR 54
YFYRLLSGPE LS FEK+RAWH+PE+LNL AM QAKSPIR
Sbjct: 164 YFYRLLSGPETLSTFEKDRAWHIPEELNLPAMQEACKVLVGHHDFSSFRASGCQAKSPIR 223
Query: 55 TLDELSVSEVIPSPNFPSLMDRERQNKVSGDPQGCHRKSEADIPL--------------- 99
+LDELSV EV SP FPS+MDRE V+ D H SE IPL
Sbjct: 224 SLDELSVVEVTRSPYFPSVMDRENPINVTDDLHCFHSNSETVIPLGSSARIDEVSASKED 283
Query: 100 ------------------------TVRLLVGVLKAVGTGNLTIPDVERILNAKTVST 132
VRLLVGVLK VGTGN+T+ DVERILNAKTV+
Sbjct: 284 VGFGKRRYHRCLVVTARARAFLYHQVRLLVGVLKDVGTGNITVTDVERILNAKTVTA 340
>G7IN91_MEDTR (tr|G7IN91) tRNA pseudouridine synthase OS=Medicago truncatula
GN=MTR_2g005830 PE=3 SV=1
Length = 375
Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 84/190 (44%), Positives = 93/190 (48%), Gaps = 74/190 (38%)
Query: 16 YFYRLLSGPEPLSAFEKERAWHVPEDLNLSAM---------------------------- 47
YFYRLLSGPE LS FEK+RAWH+PE+LNL AM
Sbjct: 164 YFYRLLSGPETLSTFEKDRAWHIPEELNLPAMQTYHMRCESLMISMQEACKVLVGHHDFS 223
Query: 48 -------QAKSPIRTLDELSVSEVIPSPNFPSLMDRERQNKVSGDPQGCHRKSEADIPL- 99
QAKSPIR+LDELSV EV SP FPS+MDRE V+ D H SE IPL
Sbjct: 224 SFRASGCQAKSPIRSLDELSVVEVTRSPYFPSVMDRENPINVTDDLHCFHSNSETVIPLG 283
Query: 100 --------------------------------------TVRLLVGVLKAVGTGNLTIPDV 121
VRLLVGVLK VGTGN+T+ DV
Sbjct: 284 SSARIDEVSASKEDVGFGKRRYHRCLVVTARARAFLYHQVRLLVGVLKDVGTGNITVTDV 343
Query: 122 ERILNAKTVS 131
ERILNAKTV+
Sbjct: 344 ERILNAKTVT 353
>M4DTZ7_BRARP (tr|M4DTZ7) Uncharacterized protein OS=Brassica rapa subsp.
pekinensis GN=Bra019990 PE=4 SV=1
Length = 632
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 73/145 (50%), Positives = 90/145 (62%), Gaps = 29/145 (20%)
Query: 16 YFYRLLSGPEPLSAFEKERAWHVPEDLNLSAMQAKSPIRTLDELSVSEVIPSPNFPSLMD 75
YFYR+LSGP+PLS FEK+RAWHVPE+L+L AMQAKSP+R+LDEL+V+E+ +P FP L +
Sbjct: 146 YFYRMLSGPDPLSIFEKDRAWHVPEELDLRAMQAKSPVRSLDELNVTELPSTPYFPPLTE 205
Query: 76 RERQNKVSGDPQGC-----------------------HR------KSEADIPLTVRLLVG 106
R N +GDP C HR +S + VRL+V
Sbjct: 206 RTWSNPNNGDPLTCSSQPKTETAGVTTNGDTFGIRKRHRCYVITARSRGFLYHQVRLIVA 265
Query: 107 VLKAVGTGNLTIPDVERILNAKTVS 131
VLK VGTG LT+ DVERIL AK VS
Sbjct: 266 VLKCVGTGELTVLDVERILKAKDVS 290
>K7LVC9_SOYBN (tr|K7LVC9) tRNA pseudouridine synthase OS=Glycine max PE=3 SV=1
Length = 387
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 66/115 (57%), Positives = 74/115 (64%), Gaps = 21/115 (18%)
Query: 5 WFERLSTISYRYFYRLLSGPEPLSAFEKERAWHVPEDLNLSAMQ---------------- 48
+ R YFYRLLSGPEPLS FEK+RAWHVPE+L+L AMQ
Sbjct: 160 FHARFKAQERTYFYRLLSGPEPLSTFEKDRAWHVPEELSLPAMQEACRVLVGCHDFSSFR 219
Query: 49 -----AKSPIRTLDELSVSEVIPSPNFPSLMDRERQNKVSGDPQGCHRKSEADIP 98
AKSPIRTLDELSV+EVI SP FPSLMDRE+ NKVSGD + C +E DIP
Sbjct: 220 AAGCQAKSPIRTLDELSVNEVIESPYFPSLMDREQHNKVSGDLRSCSNNTETDIP 274
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/32 (90%), Positives = 30/32 (93%)
Query: 101 VRLLVGVLKAVGTGNLTIPDVERILNAKTVST 132
VRLLVGVLKA GTGNLTIPDVERILNAKTV+
Sbjct: 334 VRLLVGVLKAAGTGNLTIPDVERILNAKTVTA 365
>M0TYJ7_MUSAM (tr|M0TYJ7) tRNA pseudouridine synthase OS=Musa acuminata subsp.
malaccensis PE=3 SV=1
Length = 379
Score = 121 bits (303), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 73/190 (38%), Positives = 97/190 (51%), Gaps = 64/190 (33%)
Query: 5 WFERLSTISYRYFYRLLSGPEPLSAFEKERAWHVPEDLNLSAM----------------- 47
+ R + Y YR+LSGPEPLS FEK+RAWHVPE+L++ AM
Sbjct: 170 FHARFKALERTYHYRILSGPEPLSTFEKDRAWHVPEELDILAMKKACSILIGSHDFSSFR 229
Query: 48 ----QAKSPIRTLDELSVSEVIPSPNFPSLMDRERQNKVSGDPQGCHRKSEADIPLT--- 100
QAKSPI+TLDELSV+EV+PS FPS+M+R ++G C + S+ ++P
Sbjct: 230 ATGCQAKSPIKTLDELSVTEVLPSLYFPSIMERSEMESLNGS-LSCSKTSDHELPANYLD 288
Query: 101 ---------------------------------------VRLLVGVLKAVGTGNLTIPDV 121
VRL+VG LK+VGTG +T+ DV
Sbjct: 289 TSGMSIQKNSTDCCQGFGHRSRHRCYVITARARSFLYHQVRLMVGGLKSVGTGEITVSDV 348
Query: 122 ERILNAKTVS 131
ERILNAK+V+
Sbjct: 349 ERILNAKSVT 358
>B9SKD4_RICCO (tr|B9SKD4) tRNA pseudouridine synthase OS=Ricinus communis
GN=RCOM_0759480 PE=3 SV=1
Length = 372
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/189 (40%), Positives = 95/189 (50%), Gaps = 64/189 (33%)
Query: 5 WFERLSTISYRYFYRLLSGPEPLSAFEKERAWHVPEDLNLSAM----------------- 47
+ R YFYR LSGPEPLS FEK+RAWHV EDL++ AM
Sbjct: 165 FHARFKAQERTYFYRFLSGPEPLSTFEKDRAWHVLEDLDIVAMQEACKVLVGHHDFSSFR 224
Query: 48 ----QAKSPIRTLDELSVSEVIPSPNFPSLMDRERQNKVSGDPQGCHRKSEADIPL---- 99
QAKSPIRTL E+SVSEV + FPS+ +RE QN +G+ C +K + D+P+
Sbjct: 225 ASGCQAKSPIRTLAEISVSEVASTLYFPSITERE-QNCENGE-NSCCKKFKTDLPMGSHS 282
Query: 100 -------------------------------------TVRLLVGVLKAVGTGNLTIPDVE 122
VRLLVGVLK+VG G+LT DVE
Sbjct: 283 NTNVAESSFGETDLGFGIRRRHRCFVVTARARSFLYHQVRLLVGVLKSVGIGDLTTSDVE 342
Query: 123 RILNAKTVS 131
RIL+AK+V+
Sbjct: 343 RILSAKSVT 351
>B9N771_POPTR (tr|B9N771) tRNA pseudouridine synthase OS=Populus trichocarpa
GN=POPTRDRAFT_837350 PE=3 SV=1
Length = 326
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/179 (39%), Positives = 90/179 (50%), Gaps = 62/179 (34%)
Query: 16 YFYRLLSGPEPLSAFEKERAWHVPEDLNLSAM---------------------QAKSPIR 54
YFYRLL GPE LS FEK+RAWHV E+L+L +M QAKSP R
Sbjct: 128 YFYRLLIGPELLSTFEKDRAWHVSEELDLVSMQEACKVLVGHHDFSSFRASGCQAKSPFR 187
Query: 55 TLDELSVSEVIPSPNFPSLMDRERQNKVSGDPQGCHRKSEADIPL--------------- 99
TL+ELSV EV+ +P FPS+ +RE+ + P H K + +P
Sbjct: 188 TLEELSVLEVVSTPYFPSITEREQNSSNGEGPHSFHNKCKTGLPTGSISNGFMAGGSNSG 247
Query: 100 --------------------------TVRLLVGVLKAVGTGNLTIPDVERILNAKTVST 132
VRLLVGVLK+VGTG+LT+ DVERILNA++++
Sbjct: 248 TDLGFGIRRRHRCYVITARSRSFLYHQVRLLVGVLKSVGTGDLTVSDVERILNARSITA 306
>Q67XY0_ARATH (tr|Q67XY0) tRNA pseudouridine synthase (Fragment) OS=Arabidopsis
thaliana PE=2 SV=1
Length = 368
Score = 115 bits (289), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 73/187 (39%), Positives = 90/187 (48%), Gaps = 59/187 (31%)
Query: 5 WFERLSTISYRYFYRLLSGPEPLSAFEKERAWHVPEDLNLSAM----------------- 47
+ R YFYRLLSG +PLS EK+R WHVPE+LNL M
Sbjct: 162 YHARYKAQERTYFYRLLSGSDPLSILEKDRCWHVPEELNLRFMQEACRVLVGSHDFSSFR 221
Query: 48 ----QAKSPIRTLDELSVSEVIPSPNFPSLMDRERQNKVSGDPQGC-------------- 89
QAKSP+R+LDEL+++EV +P FPS+ +R N +GDP C
Sbjct: 222 AAGCQAKSPMRSLDELNITEVPSTPYFPSITERTLSNLNNGDPLACSNQPKSETAGVTTN 281
Query: 90 ------------------HR------KSEADIPLTVRLLVGVLKAVGTGNLTIPDVERIL 125
HR +S + VRL+VG LK VGTG LT+ DVERIL
Sbjct: 282 VGEVEGSTGGDSFGRRRRHRCYVVTARSRGFLYHQVRLIVGALKCVGTGELTVSDVERIL 341
Query: 126 NAKTVST 132
AKTVS
Sbjct: 342 EAKTVSA 348
>Q6NKP7_ARATH (tr|Q6NKP7) tRNA pseudouridine synthase OS=Arabidopsis thaliana
GN=At1g09800 PE=2 SV=1
Length = 372
Score = 115 bits (289), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 73/187 (39%), Positives = 90/187 (48%), Gaps = 59/187 (31%)
Query: 5 WFERLSTISYRYFYRLLSGPEPLSAFEKERAWHVPEDLNLSAM----------------- 47
+ R YFYRLLSG +PLS EK+R WHVPE+LNL M
Sbjct: 166 YHARYKAQERTYFYRLLSGSDPLSILEKDRCWHVPEELNLRFMQEACRVLVGSHDFSSFR 225
Query: 48 ----QAKSPIRTLDELSVSEVIPSPNFPSLMDRERQNKVSGDPQGC-------------- 89
QAKSP+R+LDEL+++EV +P FPS+ +R N +GDP C
Sbjct: 226 AAGCQAKSPMRSLDELNITEVPSTPYFPSITERTLSNLNNGDPLACSNQPKSETAGVTTN 285
Query: 90 ------------------HR------KSEADIPLTVRLLVGVLKAVGTGNLTIPDVERIL 125
HR +S + VRL+VG LK VGTG LT+ DVERIL
Sbjct: 286 VGEVEGSTGGDSFGRRRRHRCYVVTARSRGFLYHQVRLIVGALKCVGTGELTVSDVERIL 345
Query: 126 NAKTVST 132
AKTVS
Sbjct: 346 EAKTVSA 352
>F4I2L0_ARATH (tr|F4I2L0) tRNA pseudouridine synthase OS=Arabidopsis thaliana
GN=AT1G09800 PE=2 SV=1
Length = 372
Score = 115 bits (289), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 73/187 (39%), Positives = 90/187 (48%), Gaps = 59/187 (31%)
Query: 5 WFERLSTISYRYFYRLLSGPEPLSAFEKERAWHVPEDLNLSAM----------------- 47
+ R YFYRLLSG +PLS EK+R WHVPE+LNL M
Sbjct: 166 YHARYKAQERTYFYRLLSGSDPLSILEKDRCWHVPEELNLRFMQEACRVLVGSHDFSSFR 225
Query: 48 ----QAKSPIRTLDELSVSEVIPSPNFPSLMDRERQNKVSGDPQGC-------------- 89
QAKSP+R+LDEL+++EV +P FPS+ +R N +GDP C
Sbjct: 226 AAGCQAKSPMRSLDELNITEVPSTPYFPSITERTLSNLNNGDPLACSNQPKSETAGVTTN 285
Query: 90 ------------------HR------KSEADIPLTVRLLVGVLKAVGTGNLTIPDVERIL 125
HR +S + VRL+VG LK VGTG LT+ DVERIL
Sbjct: 286 VGEVEGSTEGDSFGRRRRHRCYVVTARSRGFLYHQVRLIVGALKCVGTGELTVSDVERIL 345
Query: 126 NAKTVST 132
AKTVS
Sbjct: 346 EAKTVSA 352
>R0GQ47_9BRAS (tr|R0GQ47) Uncharacterized protein OS=Capsella rubella
GN=CARUB_v10009493mg PE=4 SV=1
Length = 370
Score = 114 bits (286), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 74/176 (42%), Positives = 90/176 (51%), Gaps = 60/176 (34%)
Query: 16 YFYRLLSGPEPLSAFEKERAWHVPEDLNLSAM---------------------QAKSPIR 54
YFYR+LSG +PLS EK+R WHVPE+LNL +M QAKS +R
Sbjct: 176 YFYRILSGSDPLSILEKDRCWHVPEELNLRSMQEACKVLVGTHDFSSFRAAGCQAKSAMR 235
Query: 55 TLDELSVSEVIPSPNFPSLMDRERQNKVSGDPQGC------------------------- 89
+LDELSV+EV +P FPS+ +R N +GDP C
Sbjct: 236 SLDELSVTEVPSTPYFPSITERA-SNLNNGDPFACSSQHKTETAGVGTNVGEVEGSTDGD 294
Query: 90 -------HR------KSEADIPLTVRLLVGVLKAVGTGNLTIPDVERILNAKTVST 132
HR +S + VRLLVGVLK+VGTG LT+ DVERIL AKTVS
Sbjct: 295 SFGARRRHRCYVVTARSRGFLYHQVRLLVGVLKSVGTGELTVADVERILEAKTVSA 350
>K4B1T1_SOLLC (tr|K4B1T1) tRNA pseudouridine synthase OS=Solanum lycopersicum
GN=Solyc01g103560.2 PE=3 SV=1
Length = 389
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 72/177 (40%), Positives = 95/177 (53%), Gaps = 62/177 (35%)
Query: 16 YFYRLLSGPEPLSAFEKERAWHVPEDLNLSAM---------------------QAKSPIR 54
YFYRLLSGPEP+S+FE++RAWHVPE+L+L AM QA SPIR
Sbjct: 185 YFYRLLSGPEPVSSFERDRAWHVPENLDLLAMQKACNILIGRHDFSSFRAAACQANSPIR 244
Query: 55 TLDELSVSEVIPSPNFPSLMDRERQNKVSGDP---------------------------Q 87
TLDEL+V EV+ +P FPS+ +R + + V DP +
Sbjct: 245 TLDELNVIEVVSTPFFPSISERLKSSSVMEDPTVYLGSDTNHSQISFNTNEGKLEGSNGE 304
Query: 88 GC--------HR------KSEADIPLTVRLLVGVLKAVGTGNLTIPDVERILNAKTV 130
C HR ++ + + VRLLVGVLK+VG G+LT PDV+RIL AK++
Sbjct: 305 ACQEFGLRRRHRCFVVTARARSFLYHQVRLLVGVLKSVGAGDLTDPDVKRILEAKSI 361
>M8D4H8_AEGTA (tr|M8D4H8) tRNA pseudouridine synthase-like protein 1 OS=Aegilops
tauschii GN=F775_05779 PE=4 SV=1
Length = 274
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/169 (41%), Positives = 92/169 (54%), Gaps = 41/169 (24%)
Query: 5 WFERLSTISYRYFYRLLSGPEPLSAFEKERAWHVPEDLNLSAMQAKSPIRTLDELSVSEV 64
+ R + Y YRLLSGPE S FEK AWH+PEDLN+ AM+AKSP+RTLDEL+V+EV
Sbjct: 85 FHARYKALERTYHYRLLSGPERPSIFEKNSAWHIPEDLNIQAMKAKSPVRTLDELTVTEV 144
Query: 65 IPSPNFPSLMDRERQ---------------------NKVSGDPQG---C----------- 89
P FPS ++R + VS G C
Sbjct: 145 FPVMFFPSSLERSEMESPDGSLVYSRASLMGSSGEGSDVSSTTSGKSVCENGQEFGKRLR 204
Query: 90 HR------KSEADIPLTVRLLVGVLKAVGTGNLTIPDVERILNAKTVST 132
HR ++++ + VRL+VG+LKAVG G+LT DVERIL+AKT++
Sbjct: 205 HRCFVVTARAQSFLYHQVRLMVGLLKAVGIGDLTTADVERILDAKTMTA 253
>M8AB42_TRIUA (tr|M8AB42) tRNA pseudouridine synthase-like 1 OS=Triticum urartu
GN=TRIUR3_25709 PE=4 SV=1
Length = 266
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/169 (41%), Positives = 92/169 (54%), Gaps = 41/169 (24%)
Query: 5 WFERLSTISYRYFYRLLSGPEPLSAFEKERAWHVPEDLNLSAMQAKSPIRTLDELSVSEV 64
+ R + Y YRLLSGPE S FEK AWH+PEDLN+ AM+AKSP+RTLDEL+V+EV
Sbjct: 77 FHARYKALERTYHYRLLSGPERPSIFEKNSAWHIPEDLNIQAMKAKSPVRTLDELTVTEV 136
Query: 65 IPSPNFPSLMDRERQ---------------------NKVSGDPQG---C----------- 89
P FPS ++R + VS G C
Sbjct: 137 FPVMFFPSSLERSEMESPDGSLVYSRASLMGSSGEGSDVSSTTSGKSVCENGQEFGKRLR 196
Query: 90 HR------KSEADIPLTVRLLVGVLKAVGTGNLTIPDVERILNAKTVST 132
HR ++++ + VRL+VG+LKAVG G+LT DVERIL+AKT++
Sbjct: 197 HRCFVVTARAQSFLYHQVRLMVGLLKAVGIGDLTTADVERILDAKTMTA 245
>D7KJU5_ARALL (tr|D7KJU5) tRNA pseudouridine synthase OS=Arabidopsis lyrata
subsp. lyrata GN=ARALYDRAFT_471082 PE=3 SV=1
Length = 373
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/187 (37%), Positives = 89/187 (47%), Gaps = 59/187 (31%)
Query: 5 WFERLSTISYRYFYRLLSGPEPLSAFEKERAWHVPEDLNLSAM----------------- 47
+ R YFYRLL+G +PLS EK+R WHVPE+LN +M
Sbjct: 167 YHARYKAQERTYFYRLLAGSDPLSILEKDRCWHVPEELNPRSMQEACRVLVGYHDFSSFR 226
Query: 48 ----QAKSPIRTLDELSVSEVIPSPNFPSLMDRERQNKVSGDPQGC-------------- 89
QAKSP+R LDEL+++EV +P FPS+ +R N +GDP C
Sbjct: 227 AAGCQAKSPMRYLDELNITEVPSTPYFPSITERAWSNLNNGDPLACSSQPKSETAGVTTN 286
Query: 90 ------------------HR------KSEADIPLTVRLLVGVLKAVGTGNLTIPDVERIL 125
HR +S + VRL+VG LK VGTG LT+ DVERIL
Sbjct: 287 VGEVEGSTDGDSFGRRRRHRCYVVTARSRGFLYHQVRLIVGALKCVGTGELTVSDVERIL 346
Query: 126 NAKTVST 132
AKTVS
Sbjct: 347 EAKTVSA 353
>M1CBM9_SOLTU (tr|M1CBM9) tRNA pseudouridine synthase OS=Solanum tuberosum
GN=PGSC0003DMG400024892 PE=3 SV=1
Length = 389
Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 71/179 (39%), Positives = 94/179 (52%), Gaps = 62/179 (34%)
Query: 16 YFYRLLSGPEPLSAFEKERAWHVPEDLNLSAM---------------------QAKSPIR 54
YFYRLLSGPE +S+FE++RAWHVPE+L+L AM QA SPIR
Sbjct: 185 YFYRLLSGPESVSSFERDRAWHVPENLDLLAMQKACNILIGRHDFSSFRAAACQANSPIR 244
Query: 55 TLDELSVSEVIPSPNFPSLMDRERQNKVSGDP---------------------------Q 87
TLDEL+V EV+ +P FPS+ +R + + V DP +
Sbjct: 245 TLDELNVIEVVSTPFFPSISERLKSSSVMEDPTVSLGSDTNHSQISLNTNEEKLEGSNGE 304
Query: 88 GC--------HR------KSEADIPLTVRLLVGVLKAVGTGNLTIPDVERILNAKTVST 132
C HR ++ + + VRLLVGVLK+VG G LT PDV+RIL AK+++
Sbjct: 305 ACQEFGLRRRHRCFVVTARARSFLYHQVRLLVGVLKSVGAGVLTDPDVKRILEAKSITA 363
>M4ESA6_BRARP (tr|M4ESA6) tRNA pseudouridine synthase OS=Brassica rapa subsp.
pekinensis GN=Bra031684 PE=3 SV=1
Length = 316
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 70/169 (41%), Positives = 85/169 (50%), Gaps = 52/169 (30%)
Query: 16 YFYRLLSGPEPLSAFEKERAWHVPEDLNLSAM---------------------QAKSPIR 54
YFYRLLSG +PLS EK+RAWHVPE+L+L +M QAKSP+R
Sbjct: 128 YFYRLLSGSDPLSILEKDRAWHVPEELDLRSMQEACRILVGSHDFTSFRAAGCQAKSPVR 187
Query: 55 TLDELSVSEVIPSPNFPSLMDRER--------------QNKVS--------GDPQGCHRK 92
LDE +V EV +P FPS+M+R Q K G+ G R+
Sbjct: 188 CLDEFNVIEVPSTPYFPSIMERAESILNNGDDPLTYPSQTKTETASDSTNFGETFGIRRR 247
Query: 93 SEADIPLT---------VRLLVGVLKAVGTGNLTIPDVERILNAKTVST 132
+ VRLLVG LK VGTG LT+ D+ERIL AKTVS
Sbjct: 248 HRCYVVTARARGFLYHQVRLLVGALKCVGTGELTVSDIERILEAKTVSA 296
>B8BNJ9_ORYSI (tr|B8BNJ9) tRNA pseudouridine synthase OS=Oryza sativa subsp.
indica GN=OsI_37759 PE=2 SV=1
Length = 391
Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 73/189 (38%), Positives = 91/189 (48%), Gaps = 61/189 (32%)
Query: 5 WFERLSTISYRYFYRLLSGPEPLSAFEKERAWHVPEDLNLSAM----------------- 47
+ R + Y YRLLSG EPLS FEK AWH+PEDLN+ AM
Sbjct: 182 FHARYKALERTYHYRLLSGSEPLSVFEKTSAWHIPEDLNVQAMKKACSILVGHHDFSSFR 241
Query: 48 ----QAKSPIRTLDELSVSEVIPSPNFPSLMDR------------ERQNKVSGDPQGC-- 89
QA SP+RTLDELSV+EV PS FPS M+R R + V +G
Sbjct: 242 ATGCQANSPMRTLDELSVTEVFPSMFFPSSMERSEMESLDGHLVYSRTSVVESSGKGSDA 301
Query: 90 --------------------HR------KSEADIPLTVRLLVGVLKAVGTGNLTIPDVER 123
HR ++ + + VRL+VG+LK+VGTG+LT DVER
Sbjct: 302 SSTSEQSRFENGEEFGKRLRHRCFVVTARARSFLYHQVRLMVGLLKSVGTGDLTTEDVER 361
Query: 124 ILNAKTVST 132
ILN K V+
Sbjct: 362 ILNLKAVTA 370
>Q2QWH9_ORYSJ (tr|Q2QWH9) tRNA pseudouridine synthase OS=Oryza sativa subsp.
japonica GN=LOC_Os12g09290 PE=2 SV=2
Length = 391
Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 73/189 (38%), Positives = 91/189 (48%), Gaps = 61/189 (32%)
Query: 5 WFERLSTISYRYFYRLLSGPEPLSAFEKERAWHVPEDLNLSAM----------------- 47
+ R + Y YRLLSG EPLS FEK AWH+PEDLN+ AM
Sbjct: 182 FHARYKALERTYHYRLLSGSEPLSVFEKTSAWHIPEDLNVQAMKKACSILVGHHDFSSFR 241
Query: 48 ----QAKSPIRTLDELSVSEVIPSPNFPSLMDR------------ERQNKVSGDPQGC-- 89
QA SP+RTLDELSV+EV PS FPS M+R R + V +G
Sbjct: 242 ATGCQANSPMRTLDELSVTEVFPSMFFPSSMERSEMESLDGHLVYSRTSVVESSGKGSDA 301
Query: 90 --------------------HR------KSEADIPLTVRLLVGVLKAVGTGNLTIPDVER 123
HR ++ + + VRL+VG+LK+VGTG+LT DVER
Sbjct: 302 SSTSEQSRFENGEEFGKRLRHRCFVVTARARSFLYHQVRLMVGLLKSVGTGDLTTEDVER 361
Query: 124 ILNAKTVST 132
ILN K V+
Sbjct: 362 ILNLKAVTA 370
>I1R4S9_ORYGL (tr|I1R4S9) tRNA pseudouridine synthase OS=Oryza glaberrima PE=3
SV=1
Length = 391
Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 73/189 (38%), Positives = 91/189 (48%), Gaps = 61/189 (32%)
Query: 5 WFERLSTISYRYFYRLLSGPEPLSAFEKERAWHVPEDLNLSAM----------------- 47
+ R + Y YRLLSG EPLS FEK AWH+PEDLN+ AM
Sbjct: 182 FHARYKALERTYHYRLLSGSEPLSVFEKTSAWHIPEDLNVQAMKKACSILVGHHDFSSFR 241
Query: 48 ----QAKSPIRTLDELSVSEVIPSPNFPSLMDR------------ERQNKVSGDPQGC-- 89
QA SP+RTLDELSV+EV PS FPS M+R R + V +G
Sbjct: 242 ATGCQANSPMRTLDELSVTEVFPSMFFPSSMERSEMESLDGHLVYSRTSVVESSGKGSDA 301
Query: 90 --------------------HR------KSEADIPLTVRLLVGVLKAVGTGNLTIPDVER 123
HR ++ + + VRL+VG+LK+VGTG+LT DVER
Sbjct: 302 SSTSEQSRFENGEEFGKRLRHRCFVVTARARSFLYHQVRLMVGLLKSVGTGDLTTEDVER 361
Query: 124 ILNAKTVST 132
ILN K V+
Sbjct: 362 ILNLKAVTA 370
>J3NC07_ORYBR (tr|J3NC07) tRNA pseudouridine synthase OS=Oryza brachyantha
GN=OB12G15150 PE=3 SV=1
Length = 397
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 93/189 (49%), Gaps = 61/189 (32%)
Query: 5 WFERLSTISYRYFYRLLSGPEPLSAFEKERAWHVPEDLNLSAM----------------- 47
+ R + Y YRLLSG EPLS FEK AWH+ EDLN+ AM
Sbjct: 188 FHARYKALERTYHYRLLSGSEPLSVFEKSSAWHIAEDLNVQAMKKACSILVGHHDFSSFR 247
Query: 48 ----QAKSPIRTLDELSVSEVIPSPNFPSLMDR------------ERQNKVSGDPQG--- 88
QA SP+RTLDEL+V+EV PS FPS ++R R + V +G
Sbjct: 248 AAGCQANSPMRTLDELTVTEVFPSMFFPSSLERSDMEPLDGPLIYSRTSVVESSGKGSDA 307
Query: 89 --------C-----------HR------KSEADIPLTVRLLVGVLKAVGTGNLTIPDVER 123
C HR ++ + + VRL+VG+LK+VGTG+LT DVER
Sbjct: 308 SNTTSESRCESGGEFGKRLRHRCFVVTARARSFLYHQVRLMVGLLKSVGTGDLTTADVER 367
Query: 124 ILNAKTVST 132
ILN+KTV+
Sbjct: 368 ILNSKTVTA 376
>M0YBW4_HORVD (tr|M0YBW4) tRNA pseudouridine synthase OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 282
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/190 (36%), Positives = 89/190 (46%), Gaps = 62/190 (32%)
Query: 5 WFERLSTISYRYFYRLLSGPEPLSAFEKERAWHVPEDLNLSAM----------------- 47
+ R + Y YRLLSGPE S FEK AWH+PEDLN+ AM
Sbjct: 72 FHARYKALERTYHYRLLSGPERPSIFEKNSAWHIPEDLNIQAMKKACNILVGHHDFSSFR 131
Query: 48 ----QAKSPIRTLDELSVSEVIPSPNFPSLMDRERQNKVSGD------------------ 85
QAKSP+RTLDEL+V+EV P FPS ++R G
Sbjct: 132 AFGCQAKSPVRTLDELTVTEVFPVMFFPSSLERSEMESPDGSLVYSRASSLMGSSGEGSD 191
Query: 86 ------PQGC-----------HR------KSEADIPLTVRLLVGVLKAVGTGNLTIPDVE 122
C HR ++++ + VRL+VG+LKAVG G+LT DVE
Sbjct: 192 VSSTSGKSACENGQEFGKRLRHRCFVVTARAQSFLYHQVRLMVGLLKAVGIGDLTTADVE 251
Query: 123 RILNAKTVST 132
RIL+AKT++
Sbjct: 252 RILDAKTMTA 261
>M0YBX1_HORVD (tr|M0YBX1) tRNA pseudouridine synthase OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 222
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/190 (36%), Positives = 89/190 (46%), Gaps = 62/190 (32%)
Query: 5 WFERLSTISYRYFYRLLSGPEPLSAFEKERAWHVPEDLNLSAM----------------- 47
+ R + Y YRLLSGPE S FEK AWH+PEDLN+ AM
Sbjct: 12 FHARYKALERTYHYRLLSGPERPSIFEKNSAWHIPEDLNIQAMKKACNILVGHHDFSSFR 71
Query: 48 ----QAKSPIRTLDELSVSEVIPSPNFPSLMDRERQNKVSGD------------------ 85
QAKSP+RTLDEL+V+EV P FPS ++R G
Sbjct: 72 AFGCQAKSPVRTLDELTVTEVFPVMFFPSSLERSEMESPDGSLVYSRASSLMGSSGEGSD 131
Query: 86 ------PQGC-----------HR------KSEADIPLTVRLLVGVLKAVGTGNLTIPDVE 122
C HR ++++ + VRL+VG+LKAVG G+LT DVE
Sbjct: 132 VSSTSGKSACENGQEFGKRLRHRCFVVTARAQSFLYHQVRLMVGLLKAVGIGDLTTADVE 191
Query: 123 RILNAKTVST 132
RIL+AKT++
Sbjct: 192 RILDAKTMTA 201
>K3Y7Y3_SETIT (tr|K3Y7Y3) tRNA pseudouridine synthase OS=Setaria italica
GN=Si010324m.g PE=3 SV=1
Length = 385
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/190 (36%), Positives = 88/190 (46%), Gaps = 62/190 (32%)
Query: 5 WFERLSTISYRYFYRLLSGPEPLSAFEKERAWHVPEDLNLSAM----------------- 47
+ R + Y YRLLSGPE S FEK AWH+ EDL++ AM
Sbjct: 175 FHARYKALERTYHYRLLSGPESTSVFEKNSAWHISEDLDIQAMKKACSILVGHHDFSSFR 234
Query: 48 ----QAKSPIRTLDELSVSEVIPSPNFPSLMDR------------------ERQNKVSGD 85
QA SP+RTLDEL+V+EV P FPS ++R E K S D
Sbjct: 235 AAGCQANSPMRTLDELNVTEVFPFMFFPSSIERSEMESSDGSLIYSRTPALEPSRKESDD 294
Query: 86 PQGCHRKSEAD-----------------------IPLTVRLLVGVLKAVGTGNLTIPDVE 122
KSE++ + VRL+VG+LK+VGTG+LT DVE
Sbjct: 295 SCTSSGKSESENGKEFGSRLRHRCFVVTARARSFLYHQVRLMVGLLKSVGTGDLTTADVE 354
Query: 123 RILNAKTVST 132
RILNAK V+
Sbjct: 355 RILNAKKVTA 364
>C0HIQ3_MAIZE (tr|C0HIQ3) tRNA pseudouridine synthase OS=Zea mays PE=2 SV=1
Length = 222
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/189 (34%), Positives = 90/189 (47%), Gaps = 62/189 (32%)
Query: 5 WFERLSTISYRYFYRLLSGPEPLSAFEKERAWHVPEDLNLSAM----------------- 47
+ R ++ Y YRLL+GPE S FEK WH+ EDL++ +M
Sbjct: 12 FHARYKSLERTYHYRLLAGPESTSVFEKNSVWHISEDLDIQSMKKACSILVGHHDFSSFR 71
Query: 48 ----QAKSPIRTLDELSVSEVIPSPNFPSLMDR----------------ERQNKVSGDPQ 87
QA SP+RTLDELSV+EV P FPS ++R + ++ G
Sbjct: 72 AAGCQANSPVRTLDELSVTEVFPFMFFPSSVERSELELSNVSLVYSRKPDMESSGKGSDG 131
Query: 88 GC-------------------HR------KSEADIPLTVRLLVGVLKAVGTGNLTIPDVE 122
C HR ++ + + VRL+VG+LK+VGTG+LT DVE
Sbjct: 132 SCTSSVKSDFENGKDFGKRSRHRCFVVTARARSFLYHQVRLMVGLLKSVGTGDLTTADVE 191
Query: 123 RILNAKTVS 131
RIL+AKTV+
Sbjct: 192 RILDAKTVT 200
>I1ITQ5_BRADI (tr|I1ITQ5) tRNA pseudouridine synthase OS=Brachypodium distachyon
GN=BRADI4G40560 PE=3 SV=1
Length = 386
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 67/190 (35%), Positives = 90/190 (47%), Gaps = 62/190 (32%)
Query: 5 WFERLSTISYRYFYRLLSGPEPLSAFEKERAWHVPEDLNLSAM----------------- 47
+ R + Y YR+LSGPE S FEK AWH+PEDLN+ AM
Sbjct: 176 FHARYKALERTYHYRILSGPERQSVFEKNSAWHIPEDLNIQAMKKACDLLVGHHDFSSFR 235
Query: 48 ----QAKSPIRTLDELSVSEVIPSPNFPSLMDR------------ERQNKVSGDPQGC-- 89
QAKSP+RTLDEL+V+EV P FPS ++R R + + +G
Sbjct: 236 ATGCQAKSPVRTLDELTVTEVFPFMFFPSSVERSEMESPDGSLVYSRTSLMRASAEGSDA 295
Query: 90 ---------------------HR------KSEADIPLTVRLLVGVLKAVGTGNLTIPDVE 122
HR ++ + + VRL+VG+LK+VG G+LT DVE
Sbjct: 296 PSTASGKSVSENGQEFGKRLRHRCFVVTARARSFLYHQVRLMVGLLKSVGIGDLTTADVE 355
Query: 123 RILNAKTVST 132
RIL+AK V+
Sbjct: 356 RILDAKAVTA 365
>B6SIS1_MAIZE (tr|B6SIS1) tRNA pseudouridine synthase OS=Zea mays PE=2 SV=1
Length = 386
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/189 (34%), Positives = 90/189 (47%), Gaps = 62/189 (32%)
Query: 5 WFERLSTISYRYFYRLLSGPEPLSAFEKERAWHVPEDLNLSAM----------------- 47
+ R ++ Y YRLL+GPE S FEK WH+ EDL++ +M
Sbjct: 176 FHARYKSLERTYHYRLLAGPESTSVFEKNSVWHISEDLDIQSMKKACSILVGHHDFSSFR 235
Query: 48 ----QAKSPIRTLDELSVSEVIPSPNFPSLMDR----------------ERQNKVSGDPQ 87
QA SP+RTLDELSV+EV P FPS ++R + ++ G
Sbjct: 236 AAGCQANSPVRTLDELSVTEVFPFMFFPSSVERSELELSNVSLVYSRKPDMESSGKGSDG 295
Query: 88 GC-------------------HR------KSEADIPLTVRLLVGVLKAVGTGNLTIPDVE 122
C HR ++ + + VRL+VG+LK+VGTG+LT DVE
Sbjct: 296 SCTSSVKSDFENGKDFGKRSRHRCFVVTARARSFLYHQVRLMVGLLKSVGTGDLTTADVE 355
Query: 123 RILNAKTVS 131
RIL+AKTV+
Sbjct: 356 RILDAKTVT 364
>C5YTE9_SORBI (tr|C5YTE9) tRNA pseudouridine synthase OS=Sorghum bicolor
GN=Sb08g005650 PE=3 SV=1
Length = 387
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/189 (35%), Positives = 89/189 (47%), Gaps = 62/189 (32%)
Query: 5 WFERLSTISYRYFYRLLSGPEPLSAFEKERAWHVPEDLNLSAM----------------- 47
+ R + Y YRLLSGPE S FE AWH+ EDL++ AM
Sbjct: 177 FHARYKALERTYHYRLLSGPESTSVFETNSAWHISEDLDIQAMKKACSILVGHHDFSSFR 236
Query: 48 ----QAKSPIRTLDELSVSEVIPSPNFPSLMDRER----------------QNKVSGDPQ 87
QA SP+RTLDELSV+EV P FPS ++R + ++ G
Sbjct: 237 AAGCQANSPMRTLDELSVTEVFPFMFFPSSVERSQLESSNGSLVYSRTPDIESSGKGSDL 296
Query: 88 GC-------------------HR------KSEADIPLTVRLLVGVLKAVGTGNLTIPDVE 122
C HR ++ + + VRL+VG+LK+VGTG+LT DVE
Sbjct: 297 CCTSSVKSELENGEDFGKRSRHRCFVVTARARSFLYHQVRLMVGLLKSVGTGDLTTADVE 356
Query: 123 RILNAKTVS 131
RIL+AKTV+
Sbjct: 357 RILDAKTVT 365
>A9SK13_PHYPA (tr|A9SK13) tRNA pseudouridine synthase OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_131035 PE=3 SV=1
Length = 331
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 85/165 (51%), Gaps = 51/165 (30%)
Query: 16 YFYRLLSGPEPLSAFEKERAWHVPEDLNLSAM---------------------QAKSPIR 54
Y YR+L+G +S F+K++AWHV E+LNL++M QA SPIR
Sbjct: 134 YHYRVLTGNRQMSVFQKDQAWHVSEELNLTSMMEACKVLVGHHDFSSFRATGCQANSPIR 193
Query: 55 TLDELSVSEVIPSPNFPSLMDRER--QNKVSGDPQGCHRKSEADIPL------------- 99
TLDEL V E+ P FPS +R++ QN + D + SE P+
Sbjct: 194 TLDELHVCEMPAWPCFPSPEERQQSSQNAETKDLES--TTSELKDPILTSKLGTSEKLRC 251
Query: 100 -------------TVRLLVGVLKAVGTGNLTIPDVERILNAKTVS 131
VRL+VG LKAVG G+LT+ DV+RIL+A+T++
Sbjct: 252 FVITARARSFLYHQVRLMVGTLKAVGCGDLTVQDVQRILDARTIT 296
>D8RCZ2_SELML (tr|D8RCZ2) tRNA pseudouridine synthase OS=Selaginella
moellendorffii GN=SELMODRAFT_231248 PE=3 SV=1
Length = 300
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 74/141 (52%), Gaps = 28/141 (19%)
Query: 16 YFYRLLSGPEPLSAFEKERAWHVPEDLNLSAM---------------------QAKSPIR 54
Y+YR+L+G S FE++RAWHV E LNL AM QA SPI+
Sbjct: 129 YYYRILAGSCRASLFERDRAWHVEEPLNLIAMQSACQVLLGTHDFSSFRASGCQAASPIK 188
Query: 55 TLDELSVSEVIPSPNFPSLMDRERQNKVSGDPQ----GCHRKSEADIPLTVRLLVGVLKA 110
TL+ELS+ E + P+F + N S +P ++++ + VRL+VG LK
Sbjct: 189 TLEELSIRETVSWPHF---LTGCSSNAQSSNPDLKSYVVTARAQSFLYHQVRLMVGTLKG 245
Query: 111 VGTGNLTIPDVERILNAKTVS 131
VG G T+ DV +IL +++S
Sbjct: 246 VGAGKRTVEDVRKILEGRSIS 266
>D8RSR7_SELML (tr|D8RSR7) tRNA pseudouridine synthase OS=Selaginella
moellendorffii GN=SELMODRAFT_100819 PE=3 SV=1
Length = 321
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 74/141 (52%), Gaps = 28/141 (19%)
Query: 16 YFYRLLSGPEPLSAFEKERAWHVPEDLNLSAM---------------------QAKSPIR 54
Y+YR+L+G S FE++RAWHV E LNL AM QA SP++
Sbjct: 150 YYYRILAGSCRASLFERDRAWHVEEPLNLIAMQSACQVLLGTHDFSSFRASGCQAASPVK 209
Query: 55 TLDELSVSEVIPSPNFPSLMDRERQNKVSGDPQ----GCHRKSEADIPLTVRLLVGVLKA 110
TL+ELS+ E + ++P L+ N S +P ++++ + VRL+VG LK
Sbjct: 210 TLEELSIRETV---SWPHLLTGCSSNAQSSNPDLKSYVVTARAQSFLYHQVRLMVGTLKG 266
Query: 111 VGTGNLTIPDVERILNAKTVS 131
VG G T DV +IL +++S
Sbjct: 267 VGAGKRTAEDVRKILEGRSIS 287
>M0YBW9_HORVD (tr|M0YBW9) tRNA pseudouridine synthase OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 181
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 52/93 (55%), Gaps = 21/93 (22%)
Query: 5 WFERLSTISYRYFYRLLSGPEPLSAFEKERAWHVPEDLNLSAM----------------- 47
+ R + Y YRLLSGPE S FEK AWH+PEDLN+ AM
Sbjct: 12 FHARYKALERTYHYRLLSGPERPSIFEKNSAWHIPEDLNIQAMKKACNILVGHHDFSSFR 71
Query: 48 ----QAKSPIRTLDELSVSEVIPSPNFPSLMDR 76
QAKSP+RTLDEL+V+EV P FPS ++R
Sbjct: 72 AFGCQAKSPVRTLDELTVTEVFPVMFFPSSLER 104
>D5AE97_PICSI (tr|D5AE97) tRNA pseudouridine synthase OS=Picea sitchensis PE=2
SV=1
Length = 382
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 54/103 (52%), Gaps = 21/103 (20%)
Query: 3 LLWFERLSTISYRYFYRLLSGPEPLSAFEKERAWHVPEDLNLSAM--------------- 47
+ + R Y+YR+LSG EPLS FEK+RAWHVPEDL LS M
Sbjct: 138 MTFHARYRAQERTYYYRILSGKEPLSIFEKDRAWHVPEDLGLSCMQEACKVLVGHHDFSS 197
Query: 48 ------QAKSPIRTLDELSVSEVIPSPNFPSLMDRERQNKVSG 84
QAKSPI+ LDEL V E+ P FP +DR + +S
Sbjct: 198 FRASGCQAKSPIKILDELRVCEMPAWPAFPMSIDRTSRVNISA 240
>A4S4E5_OSTLU (tr|A4S4E5) tRNA pseudouridine synthase OS=Ostreococcus lucimarinus
(strain CCE9901) GN=OSTLU_44228 PE=3 SV=1
Length = 308
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 73/161 (45%), Gaps = 40/161 (24%)
Query: 1 MNLLWFERLSTISYRYFYRLLSG--PEPLSAFEKERAWHVPED----LNLSAM------- 47
MN + R ++ RY Y +L G + S F+ ERAW+V LN+ AM
Sbjct: 123 MNPKFHARHDAVARRYRYDILVGERDDGGSLFDAERAWYVRATCDGRLNVDAMRDAAAAL 182
Query: 48 --------------QAKSPIRTLDELSVSEVIPSPNFPSLMDRERQNKVS---GDPQGCH 90
QA SP+RTL + V E + +P+ R + K+S P +
Sbjct: 183 TGTHDFSSFRANGCQASSPVRTLTSIDVKEELT--EWPAAEARGTKQKISIAVAAPSFLY 240
Query: 91 RKSEADIPLTVRLLVGVLKAVGTGNLTIPDVERILNAKTVS 131
+ VRLL G LKAVG +LT+ DV+ +L AK V+
Sbjct: 241 HQ--------VRLLAGALKAVGANDLTVKDVQELLEAKDVA 273
>O04502_ARATH (tr|O04502) F21M12.19 protein OS=Arabidopsis thaliana GN=F21M12.19
PE=4 SV=1
Length = 250
Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/34 (73%), Positives = 28/34 (82%)
Query: 15 RYFYRLLSGPEPLSAFEKERAWHVPEDLNLSAMQ 48
RYFYRLLSG +PLS EK+R WHVPE+LNL MQ
Sbjct: 180 RYFYRLLSGSDPLSILEKDRCWHVPEELNLRFMQ 213
>D3NXB2_AZOS1 (tr|D3NXB2) tRNA pseudouridine synthase A OS=Azospirillum sp.
(strain B510) GN=truA PE=3 SV=1
Length = 245
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 62/144 (43%), Gaps = 41/144 (28%)
Query: 5 WFERLSTISYRYFYRLLSGPEPLSAFEKERAWHVPEDLNLSAM----------------- 47
+ RL++ Y YR+++ PL A E RAWHV L+ AM
Sbjct: 100 FHARLTSTGRAYVYRIVNRRAPL-ALESGRAWHVTRPLDADAMHAAAQVLVGQHDFSSFR 158
Query: 48 ----QAKSPIRTLDELSVSEVIPSPNFPSLMDRERQNKVSGDPQGCHRKSEADIPLTVRL 103
QAKSP++TLD L+V ERQ GD H + + + VR
Sbjct: 159 AALCQAKSPVKTLDRLAV---------------ERQ----GDEIRVHAAARSFLHHQVRN 199
Query: 104 LVGVLKAVGTGNLTIPDVERILNA 127
+VG L+ VG G T DV R L A
Sbjct: 200 MVGTLELVGAGKWTADDVRRALEA 223
>G7Z9Q7_AZOL4 (tr|G7Z9Q7) tRNA pseudouridine synthase A OS=Azospirillum lipoferum
(strain 4B) GN=truA PE=3 SV=1
Length = 245
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 63/145 (43%), Gaps = 41/145 (28%)
Query: 5 WFERLSTISYRYFYRLLSGPEPLSAFEKERAWHVPEDLNLSAM----------------- 47
+ RL++ Y YR+++ PL A + RAWHV L+ AM
Sbjct: 100 FHARLTSTGRAYVYRIVNRRAPL-ALDAGRAWHVTRPLDAEAMHAAAQVLVGQHDFTSFR 158
Query: 48 ----QAKSPIRTLDELSVSEVIPSPNFPSLMDRERQNKVSGDPQGCHRKSEADIPLTVRL 103
QAKSP++TLD L V ERQ GD H + + + VR
Sbjct: 159 AALCQAKSPVKTLDRLDV---------------ERQ----GDEIRVHAAARSFLHHQVRN 199
Query: 104 LVGVLKAVGTGNLTIPDVERILNAK 128
+VG L+ VG G ++ DV R L A+
Sbjct: 200 MVGTLELVGAGKWSVDDVRRALEAR 224