Miyakogusa Predicted Gene

Lj0g3v0290869.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0290869.2 Non Chatacterized Hit- tr|A9PHV4|A9PHV4_POPTR
Putative uncharacterized protein OS=Populus
trichocarp,52.81,0.00000000006, ,CUFF.19438.2
         (90 letters)

Database: trembl 
           41,451,118 sequences; 13,208,986,710 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A9PHV4_POPTR (tr|A9PHV4) Putative uncharacterized protein OS=Pop...    72   9e-11

>A9PHV4_POPTR (tr|A9PHV4) Putative uncharacterized protein OS=Populus trichocarpa
           PE=2 SV=1
          Length = 128

 Score = 71.6 bits (174), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 47/89 (52%), Positives = 52/89 (58%)

Query: 1   MLLGVVIAKSWLQYWRKLLFHIKVILMFLSQSWMQLPMISQARPLMYKVIQLCTSSQQVE 60
           M LGVV AK+W Q WRKLL H K +LM L  S  QL MISQ      K     +  Q +E
Sbjct: 16  MPLGVVTAKNWRQSWRKLLSHFKAMLMLLLPSLTQLQMISQVILTTSKDSPQFSLGQLLE 75

Query: 61  KYQSMMEIERRKTSSISLRRTGIKWIRKN 89
            + SM EI   KTS ISLRRTGIK   KN
Sbjct: 76  SWCSMKEIGPSKTSLISLRRTGIKLANKN 104