Miyakogusa Predicted Gene

Lj0g3v0266639.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0266639.1 Non Chatacterized Hit- tr|C0JP24|C0JP24_LOTJA
Putative basic helix-loop-helix protein BHLH6
OS=Lotus,54.1,0.000002,seg,NULL,
gene.Ljchr0_pseudomol_20120828.path1.gene27305.1
         (95 letters)

Database: trembl 
           41,451,118 sequences; 13,208,986,710 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

C0JP24_LOTJA (tr|C0JP24) Putative basic helix-loop-helix protein...    56   5e-06

>C0JP24_LOTJA (tr|C0JP24) Putative basic helix-loop-helix protein BHLH6 OS=Lotus
           japonicus PE=4 SV=1
          Length = 364

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 33/42 (78%)

Query: 52  SGGRYFTRSKKTWLVGKVLGLEFEGSDFEAIRGLEKVYEEHF 93
           S G YFTR+KK+ L+GKVLGLE++ SD EAIRGLE+   E F
Sbjct: 321 SSGGYFTRAKKSRLLGKVLGLEYDRSDLEAIRGLEEELREMF 362