Miyakogusa Predicted Gene
- Lj0g3v0236409.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0236409.1 tr|G7LG09|G7LG09_MEDTR DNA-directed RNA
polymerase OS=Medicago truncatula GN=MTR_8g038990 PE=3
SV=1,85.68,0,DNA-DIRECTED RNA POLYMERASE,NULL; beta and beta-prime
subunits of DNA dependent RNA-polymerase,NULL;,CUFF.15483.1
(435 letters)
Database: trembl
41,451,118 sequences; 13,208,986,710 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
G7LG09_MEDTR (tr|G7LG09) DNA-directed RNA polymerase OS=Medicago... 762 0.0
K7MDF5_SOYBN (tr|K7MDF5) DNA-directed RNA polymerase OS=Glycine ... 762 0.0
I1MIR6_SOYBN (tr|I1MIR6) DNA-directed RNA polymerase OS=Glycine ... 761 0.0
K7MDF9_SOYBN (tr|K7MDF9) DNA-directed RNA polymerase OS=Glycine ... 761 0.0
K7MDF7_SOYBN (tr|K7MDF7) DNA-directed RNA polymerase OS=Glycine ... 760 0.0
K7M0Q7_SOYBN (tr|K7M0Q7) DNA-directed RNA polymerase OS=Glycine ... 750 0.0
M5XM01_PRUPE (tr|M5XM01) Uncharacterized protein OS=Prunus persi... 635 e-180
B9RGA8_RICCO (tr|B9RGA8) DNA-directed RNA polymerase OS=Ricinus ... 633 e-179
F6I5R3_VITVI (tr|F6I5R3) DNA-directed RNA polymerase OS=Vitis vi... 632 e-178
B9GM06_POPTR (tr|B9GM06) DNA-directed RNA polymerase OS=Populus ... 625 e-177
B9GWX9_POPTR (tr|B9GWX9) DNA-directed RNA polymerase OS=Populus ... 615 e-174
Q5D868_SPIOL (tr|Q5D868) DNA-directed RNA polymerase (Fragment) ... 605 e-170
K4B027_SOLLC (tr|K4B027) DNA-directed RNA polymerase OS=Solanum ... 585 e-164
D7LEE8_ARALL (tr|D7LEE8) DNA-directed RNA polymerase OS=Arabidop... 551 e-154
R0FV63_9BRAS (tr|R0FV63) Uncharacterized protein OS=Capsella rub... 541 e-151
M4C7I4_BRARP (tr|M4C7I4) DNA-directed RNA polymerase OS=Brassica... 525 e-146
M0SC38_MUSAM (tr|M0SC38) DNA-directed RNA polymerase OS=Musa acu... 515 e-143
B8AHU1_ORYSI (tr|B8AHU1) DNA-directed RNA polymerase OS=Oryza sa... 473 e-131
I1NXC6_ORYGL (tr|I1NXC6) DNA-directed RNA polymerase OS=Oryza gl... 473 e-131
B9F2S6_ORYSJ (tr|B9F2S6) DNA-directed RNA polymerase OS=Oryza sa... 472 e-130
K3YP74_SETIT (tr|K3YP74) DNA-directed RNA polymerase OS=Setaria ... 471 e-130
M0WRB8_HORVD (tr|M0WRB8) DNA-directed RNA polymerase OS=Hordeum ... 468 e-129
M8BMS2_AEGTA (tr|M8BMS2) DNA-directed RNA polymerase II subunit ... 467 e-129
M0WRB9_HORVD (tr|M0WRB9) DNA-directed RNA polymerase OS=Hordeum ... 467 e-129
I1IV91_BRADI (tr|I1IV91) DNA-directed RNA polymerase OS=Brachypo... 465 e-128
J3L9M9_ORYBR (tr|J3L9M9) DNA-directed RNA polymerase OS=Oryza br... 464 e-128
C5XUR7_SORBI (tr|C5XUR7) DNA-directed RNA polymerase OS=Sorghum ... 377 e-102
K7USA4_MAIZE (tr|K7USA4) DNA-directed RNA polymerase OS=Zea mays... 371 e-100
M8C0F8_AEGTA (tr|M8C0F8) DNA-directed RNA polymerase II subunit ... 339 1e-90
G7LG88_MEDTR (tr|G7LG88) DNA-directed RNA polymerase OS=Medicago... 335 3e-89
Q0E3V3_ORYSJ (tr|Q0E3V3) DNA-directed RNA polymerase (Fragment) ... 333 7e-89
J3L864_ORYBR (tr|J3L864) DNA-directed RNA polymerase OS=Oryza br... 328 3e-87
K3Y4N1_SETIT (tr|K3Y4N1) DNA-directed RNA polymerase OS=Setaria ... 319 1e-84
B8A9M1_ORYSI (tr|B8A9M1) DNA-directed RNA polymerase OS=Oryza sa... 310 8e-82
Q5JJW0_ORYSJ (tr|Q5JJW0) DNA-directed RNA polymerase OS=Oryza sa... 310 1e-81
B9EWM0_ORYSJ (tr|B9EWM0) DNA-directed RNA polymerase OS=Oryza sa... 309 1e-81
C5XJ93_SORBI (tr|C5XJ93) DNA-directed RNA polymerase (Fragment) ... 305 2e-80
M0XPZ5_HORVD (tr|M0XPZ5) DNA-directed RNA polymerase OS=Hordeum ... 265 3e-68
M0XQ02_HORVD (tr|M0XQ02) DNA-directed RNA polymerase OS=Hordeum ... 264 6e-68
M0XPZ2_HORVD (tr|M0XPZ2) DNA-directed RNA polymerase OS=Hordeum ... 263 7e-68
R7WAM9_AEGTA (tr|R7WAM9) DNA-directed RNA polymerase subunit A O... 250 1e-63
Q1L5X7_SOLLC (tr|Q1L5X7) DNA-directed RNA polymerase (Fragment) ... 227 6e-57
A9SIR4_PHYPA (tr|A9SIR4) DNA-directed RNA polymerase OS=Physcomi... 226 1e-56
M8ASR8_AEGTA (tr|M8ASR8) DNA-directed RNA polymerase II subunit ... 214 8e-53
I1NVI7_ORYGL (tr|I1NVI7) DNA-directed RNA polymerase OS=Oryza gl... 206 2e-50
A9SIX8_PHYPA (tr|A9SIX8) DNA-directed RNA polymerase OS=Physcomi... 205 2e-50
D8RLP4_SELML (tr|D8RLP4) DNA-directed RNA polymerase OS=Selagine... 197 6e-48
D8RN79_SELML (tr|D8RN79) DNA-directed RNA polymerase OS=Selagine... 196 1e-47
Q1L5X5_ANTMA (tr|Q1L5X5) DNA-directed RNA polymerase (Fragment) ... 164 5e-38
D8T4Y5_SELML (tr|D8T4Y5) DNA-directed RNA polymerase (Fragment) ... 164 7e-38
D8RCH5_SELML (tr|D8RCH5) DNA-directed RNA polymerase (Fragment) ... 163 1e-37
M0TPQ4_MUSAM (tr|M0TPQ4) DNA-directed RNA polymerase OS=Musa acu... 163 2e-37
J3MZZ4_ORYBR (tr|J3MZZ4) DNA-directed RNA polymerase OS=Oryza br... 161 5e-37
K4CP21_SOLLC (tr|K4CP21) DNA-directed RNA polymerase OS=Solanum ... 160 1e-36
K7LMQ8_SOYBN (tr|K7LMQ8) DNA-directed RNA polymerase OS=Glycine ... 159 2e-36
M5WEG2_PRUPE (tr|M5WEG2) Uncharacterized protein OS=Prunus persi... 157 8e-36
G7KER5_MEDTR (tr|G7KER5) DNA-directed RNA polymerase OS=Medicago... 156 1e-35
D7KU36_ARALL (tr|D7KU36) DNA-directed RNA polymerase OS=Arabidop... 155 2e-35
J3M0K5_ORYBR (tr|J3M0K5) DNA-directed RNA polymerase OS=Oryza br... 154 4e-35
Q1L5X6_SOLLC (tr|Q1L5X6) DNA-directed RNA polymerase (Fragment) ... 154 5e-35
C0JR65_MAIZE (tr|C0JR65) DNA-directed RNA polymerase OS=Zea mays... 154 6e-35
C0JR68_MAIZE (tr|C0JR68) DNA-directed RNA polymerase OS=Zea mays... 154 6e-35
C0JR66_MAIZE (tr|C0JR66) DNA-directed RNA polymerase OS=Zea mays... 154 6e-35
B9G500_ORYSJ (tr|B9G500) DNA-directed RNA polymerase OS=Oryza sa... 153 1e-34
B9GKP9_POPTR (tr|B9GKP9) DNA-directed RNA polymerase OS=Populus ... 152 2e-34
R0HUP7_9BRAS (tr|R0HUP7) Uncharacterized protein OS=Capsella rub... 152 3e-34
K7K551_SOYBN (tr|K7K551) DNA-directed RNA polymerase OS=Glycine ... 152 4e-34
I1JA29_SOYBN (tr|I1JA29) DNA-directed RNA polymerase OS=Glycine ... 151 4e-34
B8BED0_ORYSI (tr|B8BED0) DNA-directed RNA polymerase OS=Oryza sa... 151 5e-34
F6HUI3_VITVI (tr|F6HUI3) DNA-directed RNA polymerase OS=Vitis vi... 150 8e-34
M4EFP9_BRARP (tr|M4EFP9) DNA-directed RNA polymerase OS=Brassica... 150 1e-33
A5BZZ3_VITVI (tr|A5BZZ3) DNA-directed RNA polymerase OS=Vitis vi... 149 2e-33
M8C5N9_AEGTA (tr|M8C5N9) DNA-directed RNA polymerase III subunit... 148 4e-33
K2NKG9_TRYCR (tr|K2NKG9) DNA-directed RNA polymerase OS=Trypanos... 146 1e-32
M7ZUZ1_TRIUA (tr|M7ZUZ1) DNA-directed RNA polymerase D subunit 1... 146 2e-32
Q2PYS4_SPIPN (tr|Q2PYS4) DNA-directed RNA polymerase (Fragment) ... 146 2e-32
Q01JX0_ORYSA (tr|Q01JX0) DNA-directed RNA polymerase OS=Oryza sa... 145 2e-32
B8AT49_ORYSI (tr|B8AT49) DNA-directed RNA polymerase OS=Oryza sa... 145 3e-32
G0ULQ7_TRYCI (tr|G0ULQ7) DNA-directed RNA polymerase OS=Trypanos... 145 3e-32
Q8ISB0_TRYCR (tr|Q8ISB0) DNA-directed RNA polymerase OS=Trypanos... 145 3e-32
Q5I2R7_9HOMO (tr|Q5I2R7) DNA-directed RNA polymerase (Fragment) ... 145 4e-32
E9B260_LEIMU (tr|E9B260) DNA-directed RNA polymerase OS=Leishman... 145 4e-32
B9RC12_RICCO (tr|B9RC12) DNA-directed RNA polymerase OS=Ricinus ... 145 4e-32
D8PLU0_SCHCM (tr|D8PLU0) DNA-directed RNA polymerase OS=Schizoph... 144 5e-32
A4I766_LEIIN (tr|A4I766) DNA-directed RNA polymerase OS=Leishman... 144 5e-32
A4HJP9_LEIBR (tr|A4HJP9) DNA-directed RNA polymerase OS=Leishman... 144 5e-32
B9FC30_ORYSJ (tr|B9FC30) DNA-directed RNA polymerase OS=Oryza sa... 144 6e-32
Q4Q600_LEIMA (tr|Q4Q600) DNA-directed RNA polymerase OS=Leishman... 144 6e-32
E9BN38_LEIDB (tr|E9BN38) DNA-directed RNA polymerase OS=Leishman... 144 6e-32
Q95W43_TRYCR (tr|Q95W43) DNA-directed RNA polymerase OS=Trypanos... 144 6e-32
Q4DDX5_TRYCC (tr|Q4DDX5) DNA-directed RNA polymerase OS=Trypanos... 144 6e-32
M0VV75_HORVD (tr|M0VV75) DNA-directed RNA polymerase OS=Hordeum ... 144 9e-32
K4E797_TRYCR (tr|K4E797) DNA-directed RNA polymerase (Fragment) ... 144 9e-32
Q2PYS8_9FUNG (tr|Q2PYS8) DNA-directed RNA polymerase (Fragment) ... 144 1e-31
M0VV69_HORVD (tr|M0VV69) DNA-directed RNA polymerase OS=Hordeum ... 143 1e-31
Q1L5Y5_9VIRI (tr|Q1L5Y5) DNA-directed RNA polymerase (Fragment) ... 143 1e-31
A1YIB0_9HOMO (tr|A1YIB0) DNA-directed RNA polymerase (Fragment) ... 143 1e-31
M0VV71_HORVD (tr|M0VV71) DNA-directed RNA polymerase OS=Hordeum ... 143 1e-31
M0VV73_HORVD (tr|M0VV73) DNA-directed RNA polymerase OS=Hordeum ... 143 1e-31
M0VV68_HORVD (tr|M0VV68) DNA-directed RNA polymerase OS=Hordeum ... 143 1e-31
M0VV72_HORVD (tr|M0VV72) DNA-directed RNA polymerase OS=Hordeum ... 143 2e-31
M0VV76_HORVD (tr|M0VV76) DNA-directed RNA polymerase OS=Hordeum ... 143 2e-31
M0VV74_HORVD (tr|M0VV74) DNA-directed RNA polymerase OS=Hordeum ... 143 2e-31
G0TZQ4_TRYVY (tr|G0TZQ4) DNA-directed RNA polymerase (Fragment) ... 142 2e-31
Q26794_9TRYP (tr|Q26794) DNA-directed RNA polymerase OS=Trypanos... 142 2e-31
R7SV30_DICSQ (tr|R7SV30) Beta and beta-prime subunits of DNA dep... 142 2e-31
Q9NJR9_LEIDO (tr|Q9NJR9) DNA-directed RNA polymerase OS=Leishman... 142 2e-31
Q26791_9TRYP (tr|Q26791) DNA-directed RNA polymerase OS=Trypanos... 142 2e-31
C9ZMF2_TRYB9 (tr|C9ZMF2) DNA-directed RNA polymerase OS=Trypanos... 142 2e-31
Q584K3_TRYB2 (tr|Q584K3) DNA-directed RNA polymerase OS=Trypanos... 142 2e-31
C9ZWN4_TRYB9 (tr|C9ZWN4) DNA-directed RNA polymerase (Fragment) ... 142 2e-31
Q57YU2_TRYB2 (tr|Q57YU2) DNA-directed RNA polymerase OS=Trypanos... 142 2e-31
B0DB45_LACBS (tr|B0DB45) DNA-directed RNA polymerase OS=Laccaria... 142 2e-31
Q0PQ11_9PEZI (tr|Q0PQ11) DNA-directed RNA polymerase (Fragment) ... 142 3e-31
A8N128_COPC7 (tr|A8N128) DNA-directed RNA polymerase OS=Coprinop... 141 4e-31
M2QWM8_CERSU (tr|M2QWM8) DNA-directed RNA polymerase OS=Ceripori... 141 4e-31
G9M7Z8_9FUNG (tr|G9M7Z8) DNA-directed RNA polymerase (Fragment) ... 141 5e-31
Q2PYR1_9FUNG (tr|Q2PYR1) DNA-directed RNA polymerase (Fragment) ... 141 5e-31
M0VV70_HORVD (tr|M0VV70) DNA-directed RNA polymerase OS=Hordeum ... 141 6e-31
K5XJ33_AGABU (tr|K5XJ33) DNA-directed RNA polymerase OS=Agaricus... 141 6e-31
K9ICM6_AGABB (tr|K9ICM6) DNA-directed RNA polymerase (Fragment) ... 141 6e-31
Q25312_LEIMA (tr|Q25312) DNA-directed RNA polymerase OS=Leishman... 141 6e-31
Q9BJ59_LEPSE (tr|Q9BJ59) DNA-directed RNA polymerase OS=Leptomon... 140 7e-31
Q5S1Y0_9HOMO (tr|Q5S1Y0) DNA-directed RNA polymerase (Fragment) ... 140 7e-31
F2TC89_AJEDA (tr|F2TC89) DNA-directed RNA polymerase OS=Ajellomy... 140 1e-30
C5K0T9_AJEDS (tr|C5K0T9) DNA-directed RNA polymerase OS=Ajellomy... 140 1e-30
C5GKA7_AJEDR (tr|C5GKA7) DNA-directed RNA polymerase OS=Ajellomy... 140 1e-30
A8Q5I6_MALGO (tr|A8Q5I6) DNA-directed RNA polymerase OS=Malassez... 140 1e-30
Q2PYR2_UMBRA (tr|Q2PYR2) DNA-directed RNA polymerase (Fragment) ... 140 1e-30
A1YIC1_BLAEM (tr|A1YIC1) DNA-directed RNA polymerase (Fragment) ... 140 1e-30
A1YIC3_9FUNG (tr|A1YIC3) DNA-directed RNA polymerase (Fragment) ... 139 1e-30
A1YIB9_ALLMA (tr|A1YIB9) DNA-directed RNA polymerase (Fragment) ... 139 2e-30
M5ECE3_MALSM (tr|M5ECE3) Genomic scaffold, msy_sf_17 OS=Malassez... 139 2e-30
C0SE75_PARBP (tr|C0SE75) DNA-directed RNA polymerase OS=Paracocc... 139 2e-30
A1YIB1_9BASI (tr|A1YIB1) DNA-directed RNA polymerase (Fragment) ... 139 2e-30
C1GHL1_PARBD (tr|C1GHL1) DNA-directed RNA polymerase OS=Paracocc... 139 2e-30
C1H3Q4_PARBA (tr|C1H3Q4) DNA-directed RNA polymerase OS=Paracocc... 139 2e-30
A1YIC0_9FUNG (tr|A1YIC0) DNA-directed RNA polymerase (Fragment) ... 139 2e-30
A5H293_9LECA (tr|A5H293) DNA-directed RNA polymerase (Fragment) ... 139 3e-30
M2N508_9PEZI (tr|M2N508) DNA-directed RNA polymerase OS=Baudoini... 139 3e-30
Q9C428_9FUNG (tr|Q9C428) DNA-directed RNA polymerase (Fragment) ... 139 3e-30
Q2PYQ2_9FUNG (tr|Q2PYQ2) DNA-directed RNA polymerase (Fragment) ... 139 3e-30
A1YIC6_NEOFR (tr|A1YIC6) DNA-directed RNA polymerase (Fragment) ... 139 3e-30
F8TBT6_9EUKA (tr|F8TBT6) DNA-directed RNA polymerase (Fragment) ... 138 3e-30
Q2PYP9_9FUNG (tr|Q2PYP9) DNA-directed RNA polymerase (Fragment) ... 138 3e-30
G3GC95_9ASCO (tr|G3GC95) DNA-directed RNA polymerase (Fragment) ... 138 4e-30
F4S9X8_MELLP (tr|F4S9X8) DNA-directed RNA polymerase OS=Melampso... 138 4e-30
Q2PYT2_ALLAR (tr|Q2PYT2) DNA-directed RNA polymerase (Fragment) ... 138 4e-30
G0UT19_TRYCI (tr|G0UT19) DNA-directed RNA polymerase OS=Trypanos... 138 4e-30
E3L0Q1_PUCGT (tr|E3L0Q1) DNA-directed RNA polymerase OS=Puccinia... 138 4e-30
G3GC94_9ASCO (tr|G3GC94) DNA-directed RNA polymerase (Fragment) ... 138 4e-30
I0YN39_9CHLO (tr|I0YN39) DNA-directed RNA polymerase OS=Coccomyx... 138 4e-30
A7J5B1_9LECA (tr|A7J5B1) DNA-directed RNA polymerase (Fragment) ... 138 5e-30
I7A0C5_SCHPM (tr|I7A0C5) DNA-directed RNA polymerase (Fragment) ... 138 5e-30
F8S1G5_9EUGL (tr|F8S1G5) DNA-directed RNA polymerase (Fragment) ... 138 5e-30
K4N3B4_9EUKA (tr|K4N3B4) DNA-directed RNA polymerase OS=Amoeboap... 138 5e-30
F8QG95_SERL3 (tr|F8QG95) DNA-directed RNA polymerase OS=Serpula ... 137 6e-30
F8PAY6_SERL9 (tr|F8PAY6) DNA-directed RNA polymerase OS=Serpula ... 137 6e-30
E9CY52_COCPS (tr|E9CY52) DNA-directed RNA polymerase OS=Coccidio... 137 6e-30
J4IAY2_FIBRA (tr|J4IAY2) DNA-directed RNA polymerase OS=Fibropor... 137 6e-30
K1W5F5_TRIAC (tr|K1W5F5) DNA-directed RNA polymerase OS=Trichosp... 137 6e-30
J3KB55_COCIM (tr|J3KB55) DNA-directed RNA polymerase OS=Coccidio... 137 6e-30
C5PAJ4_COCP7 (tr|C5PAJ4) DNA-directed RNA polymerase OS=Coccidio... 137 7e-30
J4U7H4_TRIAS (tr|J4U7H4) DNA-directed RNA polymerase OS=Trichosp... 137 7e-30
C4JY44_UNCRE (tr|C4JY44) DNA-directed RNA polymerase OS=Uncinoca... 137 7e-30
J3PS24_PUCT1 (tr|J3PS24) DNA-directed RNA polymerase OS=Puccinia... 137 7e-30
G9JY86_9FUNG (tr|G9JY86) DNA-directed RNA polymerase (Fragment) ... 137 9e-30
F0UGB6_AJEC8 (tr|F0UGB6) DNA-directed RNA polymerase OS=Ajellomy... 137 1e-29
Q2PYS5_HYACU (tr|Q2PYS5) DNA-directed RNA polymerase (Fragment) ... 137 1e-29
Q2PYR4_9FUNG (tr|Q2PYR4) DNA-directed RNA polymerase (Fragment) ... 137 1e-29
G9JY87_9FUNG (tr|G9JY87) DNA-directed RNA polymerase (Fragment) ... 137 1e-29
K5W9B5_PHACS (tr|K5W9B5) DNA-directed RNA polymerase OS=Phaneroc... 137 1e-29
Q5QHU1_AMAPH (tr|Q5QHU1) DNA-directed RNA polymerase (Fragment) ... 137 1e-29
Q304Q7_9HOMO (tr|Q304Q7) DNA-directed RNA polymerase (Fragment) ... 137 1e-29
I2FUN2_USTH4 (tr|I2FUN2) DNA-directed RNA polymerase OS=Ustilago... 136 1e-29
A6QYA7_AJECN (tr|A6QYA7) DNA-directed RNA polymerase OS=Ajellomy... 136 1e-29
H2EQP0_UMBRA (tr|H2EQP0) DNA-directed RNA polymerase (Fragment) ... 136 2e-29
Q4P7Q0_USTMA (tr|Q4P7Q0) DNA-directed RNA polymerase OS=Ustilago... 136 2e-29
E6ZML9_SPORE (tr|E6ZML9) DNA-directed RNA polymerase OS=Sporisor... 136 2e-29
R9NXG0_9BASI (tr|R9NXG0) Uncharacterized protein OS=Pseudozyma h... 136 2e-29
L0PB90_PNEJ8 (tr|L0PB90) DNA-directed RNA polymerase OS=Pneumocy... 136 2e-29
E6R7B9_CRYGW (tr|E6R7B9) DNA-directed RNA polymerase OS=Cryptoco... 135 2e-29
Q0PQ02_9LECA (tr|Q0PQ02) DNA-directed RNA polymerase (Fragment) ... 135 3e-29
J9VSQ4_CRYNH (tr|J9VSQ4) DNA-directed RNA polymerase OS=Cryptoco... 135 3e-29
M9MD47_9BASI (tr|M9MD47) Ngg1-interacting factor 3 protein NIF3L... 135 3e-29
B6JYP8_SCHJY (tr|B6JYP8) DNA-directed RNA polymerase OS=Schizosa... 135 3e-29
E6N7C0_9ARCH (tr|E6N7C0) DNA-directed RNA polymerase OS=Candidat... 135 3e-29
Q2PYQ3_PHYBL (tr|Q2PYQ3) DNA-directed RNA polymerase (Fragment) ... 135 4e-29
G9JY81_9FUNG (tr|G9JY81) DNA-directed RNA polymerase (Fragment) ... 135 4e-29
Q2PYR5_9FUNG (tr|Q2PYR5) DNA-directed RNA polymerase (Fragment) ... 135 4e-29
M3B0A6_9PEZI (tr|M3B0A6) DNA-directed RNA polymerase OS=Pseudoce... 135 4e-29
Q2PYS6_9FUNG (tr|Q2PYS6) DNA-directed RNA polymerase (Fragment) ... 135 4e-29
F8S1G7_9EUKA (tr|F8S1G7) DNA-directed RNA polymerase (Fragment) ... 134 5e-29
A5H294_9LECA (tr|A5H294) DNA-directed RNA polymerase (Fragment) ... 134 5e-29
Q5KGG3_CRYNJ (tr|Q5KGG3) DNA-directed RNA polymerase OS=Cryptoco... 134 5e-29
F5HIN3_CRYNB (tr|F5HIN3) DNA-directed RNA polymerase OS=Cryptoco... 134 5e-29
A4RTE2_OSTLU (tr|A4RTE2) DNA-directed RNA polymerase OS=Ostreoco... 134 5e-29
A1YIB3_9FUNG (tr|A1YIB3) DNA-directed RNA polymerase (Fragment) ... 134 6e-29
A1YIB8_9GLOM (tr|A1YIB8) DNA-directed RNA polymerase (Fragment) ... 134 7e-29
Q0PQ13_9LECA (tr|Q0PQ13) DNA-directed RNA polymerase (Fragment) ... 134 7e-29
A1YIA6_TRIRU (tr|A1YIA6) DNA-directed RNA polymerase (Fragment) ... 134 7e-29
A1YIA8_9ASCO (tr|A1YIA8) DNA-directed RNA polymerase (Fragment) ... 134 8e-29
A7J588_9LECA (tr|A7J588) DNA-directed RNA polymerase (Fragment) ... 134 9e-29
H2EQN9_MORIS (tr|H2EQN9) DNA-directed RNA polymerase (Fragment) ... 134 9e-29
M7NUD9_9ASCO (tr|M7NUD9) Uncharacterized protein OS=Pneumocystis... 134 9e-29
I4Y971_WALSC (tr|I4Y971) DNA-directed RNA polymerase OS=Wallemia... 134 1e-28
O61119_DICDI (tr|O61119) DNA-directed RNA polymerase (Fragment) ... 134 1e-28
A5H276_9LECA (tr|A5H276) DNA-directed RNA polymerase (Fragment) ... 134 1e-28
A1YIB5_9FUNG (tr|A1YIB5) DNA-directed RNA polymerase (Fragment) ... 133 1e-28
F2SXT8_TRIRC (tr|F2SXT8) DNA-directed RNA polymerase OS=Trichoph... 133 1e-28
E5R1G4_ARTGP (tr|E5R1G4) DNA-directed RNA polymerase OS=Arthrode... 133 1e-28
K3WV53_PYTUL (tr|K3WV53) DNA-directed RNA polymerase OS=Pythium ... 133 2e-28
Q0PQ04_9LECA (tr|Q0PQ04) DNA-directed RNA polymerase (Fragment) ... 133 2e-28
F2PRD9_TRIEC (tr|F2PRD9) DNA-directed RNA polymerase OS=Trichoph... 133 2e-28
C5FCL2_ARTOC (tr|C5FCL2) DNA-directed RNA polymerase OS=Arthrode... 133 2e-28
A7J591_9LECA (tr|A7J591) DNA-directed RNA polymerase (Fragment) ... 133 2e-28
K8ECL4_9CHLO (tr|K8ECL4) DNA-directed RNA polymerase OS=Bathycoc... 132 2e-28
D4AV18_ARTBC (tr|D4AV18) DNA-directed RNA polymerase OS=Arthrode... 132 2e-28
D4D6M6_TRIVH (tr|D4D6M6) DNA-directed RNA polymerase OS=Trichoph... 132 2e-28
A5H2F1_9LECA (tr|A5H2F1) DNA-directed RNA polymerase (Fragment) ... 132 2e-28
A1YIB6_9FUNG (tr|A1YIB6) DNA-directed RNA polymerase (Fragment) ... 132 2e-28
Q2PYQ1_9FUNG (tr|Q2PYQ1) DNA-directed RNA polymerase (Fragment) ... 132 2e-28
R7Z6D3_9EURO (tr|R7Z6D3) DNA-directed RNA polymerase II subunit ... 132 2e-28
A7J5B2_9LECA (tr|A7J5B2) DNA-directed RNA polymerase (Fragment) ... 132 2e-28
F0ZE84_DICPU (tr|F0ZE84) DNA-directed RNA polymerase OS=Dictyost... 132 3e-28
Q2PYR7_SMICU (tr|Q2PYR7) DNA-directed RNA polymerase (Fragment) ... 132 3e-28
A5H283_9LECA (tr|A5H283) DNA-directed RNA polymerase (Fragment) ... 132 3e-28
A1YIB2_SMICU (tr|A1YIB2) DNA-directed RNA polymerase (Fragment) ... 132 3e-28
Q2PYS1_9FUNG (tr|Q2PYS1) DNA-directed RNA polymerase (Fragment) ... 132 3e-28
A0AAR2_9GLOM (tr|A0AAR2) DNA-directed RNA polymerase (Fragment) ... 132 3e-28
B7PVV6_IXOSC (tr|B7PVV6) DNA-directed RNA polymerase OS=Ixodes s... 132 3e-28
G4T8R1_PIRID (tr|G4T8R1) DNA-directed RNA polymerase OS=Piriform... 132 4e-28
R9AD30_WALIC (tr|R9AD30) DNA-directed RNA polymerase II subunit ... 131 4e-28
K7XFL8_9EURO (tr|K7XFL8) DNA-directed RNA polymerase (Fragment) ... 131 4e-28
G7E0H8_MIXOS (tr|G7E0H8) DNA-directed RNA polymerase OS=Mixia os... 131 4e-28
Q2PYQ8_9GLOM (tr|Q2PYQ8) DNA-directed RNA polymerase (Fragment) ... 131 5e-28
M7WX53_RHOTO (tr|M7WX53) DNA-directed RNA polymerase II subunit ... 131 5e-28
A5H295_9LECA (tr|A5H295) DNA-directed RNA polymerase (Fragment) ... 131 5e-28
I7B979_9ASCO (tr|I7B979) DNA-directed RNA polymerase (Fragment) ... 131 5e-28
F0WAT9_9STRA (tr|F0WAT9) DNA-directed RNA polymerase OS=Albugo l... 131 5e-28
M3C1A1_9PEZI (tr|M3C1A1) DNA-directed RNA polymerase OS=Mycospha... 131 6e-28
A7J593_9LECA (tr|A7J593) DNA-directed RNA polymerase (Fragment) ... 131 6e-28
A5H277_9LECA (tr|A5H277) DNA-directed RNA polymerase (Fragment) ... 131 6e-28
A1CNZ4_ASPCL (tr|A1CNZ4) DNA-directed RNA polymerase OS=Aspergil... 130 7e-28
Q0PQ00_9LECA (tr|Q0PQ00) DNA-directed RNA polymerase (Fragment) ... 130 7e-28
I0Z9A9_9CHLO (tr|I0Z9A9) DNA-directed RNA polymerase OS=Coccomyx... 130 8e-28
M5FQ84_DACSP (tr|M5FQ84) Subunit of DNA dependent RNA-polymerase... 130 8e-28
A7J586_9LECA (tr|A7J586) DNA-directed RNA polymerase (Fragment) ... 130 8e-28
B6QAY2_PENMQ (tr|B6QAY2) DNA-directed RNA polymerase OS=Penicill... 130 8e-28
F9X8Y2_MYCGM (tr|F9X8Y2) DNA-directed RNA polymerase OS=Mycospha... 130 8e-28
Q2PYR6_9FUNG (tr|Q2PYR6) DNA-directed RNA polymerase (Fragment) ... 130 1e-27
B8N404_ASPFN (tr|B8N404) DNA-directed RNA polymerase OS=Aspergil... 130 1e-27
Q9HGZ5_ASPOZ (tr|Q9HGZ5) DNA-directed RNA polymerase OS=Aspergil... 130 1e-27
Q2ULA0_ASPOR (tr|Q2ULA0) DNA-directed RNA polymerase OS=Aspergil... 130 1e-27
I8TRP3_ASPO3 (tr|I8TRP3) DNA-directed RNA polymerase OS=Aspergil... 130 1e-27
N1PVU3_MYCPJ (tr|N1PVU3) Uncharacterized protein OS=Dothistroma ... 130 1e-27
A9CTJ8_ENTBH (tr|A9CTJ8) DNA-directed RNA polymerase OS=Enterocy... 130 1e-27
F8TBT7_9EUKA (tr|F8TBT7) DNA-directed RNA polymerase (Fragment) ... 130 1e-27
F8QWS5_9FUNG (tr|F8QWS5) DNA-directed RNA polymerase (Fragment) ... 130 1e-27
M5C134_9HOMO (tr|M5C134) DNA-directed RNA polymerase II subunit ... 130 1e-27
D2RIB4_ARCPA (tr|D2RIB4) DNA-directed RNA polymerase OS=Archaeog... 129 2e-27
C9SQ00_VERA1 (tr|C9SQ00) DNA-directed RNA polymerase OS=Verticil... 129 2e-27
B8M2Y2_TALSN (tr|B8M2Y2) DNA-directed RNA polymerase OS=Talaromy... 129 2e-27
D0P371_PHYIT (tr|D0P371) DNA-directed RNA polymerase OS=Phytopht... 129 2e-27
Q2PYQ6_9GLOM (tr|Q2PYQ6) DNA-directed RNA polymerase (Fragment) ... 129 2e-27
G9JY78_9FUNG (tr|G9JY78) DNA-directed RNA polymerase (Fragment) ... 129 2e-27
A5H297_9LECA (tr|A5H297) DNA-directed RNA polymerase (Fragment) ... 129 2e-27
D8M7F6_BLAHO (tr|D8M7F6) DNA-directed RNA polymerase OS=Blastocy... 129 2e-27
A7J5B0_9LECA (tr|A7J5B0) DNA-directed RNA polymerase (Fragment) ... 129 2e-27
A7J592_9LECA (tr|A7J592) DNA-directed RNA polymerase (Fragment) ... 129 2e-27
A5H2E6_9LECA (tr|A5H2E6) DNA-directed RNA polymerase (Fragment) ... 129 2e-27
Q0PPZ3_9LECA (tr|Q0PPZ3) DNA-directed RNA polymerase (Fragment) ... 129 2e-27
I7AWA0_9ASCO (tr|I7AWA0) DNA-directed RNA polymerase (Fragment) ... 129 2e-27
A5H2F5_9LECA (tr|A5H2F5) DNA-directed RNA polymerase (Fragment) ... 129 2e-27
I7A0B5_9ASCO (tr|I7A0B5) DNA-directed RNA polymerase (Fragment) ... 129 3e-27
G5CDC2_9ASCO (tr|G5CDC2) DNA-directed RNA polymerase (Fragment) ... 129 3e-27
G0N244_CAEBE (tr|G0N244) DNA-directed RNA polymerase OS=Caenorha... 129 3e-27
G9JY77_9FUNG (tr|G9JY77) DNA-directed RNA polymerase (Fragment) ... 129 3e-27
I7A0A9_9ASCO (tr|I7A0A9) DNA-directed RNA polymerase (Fragment) ... 129 3e-27
I7AW86_9ASCO (tr|I7AW86) DNA-directed RNA polymerase (Fragment) ... 128 3e-27
I7B5E4_TRIVR (tr|I7B5E4) DNA-directed RNA polymerase (Fragment) ... 128 4e-27
G9JY82_9FUNG (tr|G9JY82) DNA-directed RNA polymerase (Fragment) ... 128 4e-27
Q30BD8_CYAPA (tr|Q30BD8) DNA-directed RNA polymerase (Fragment) ... 128 4e-27
I7B5D0_9ASCO (tr|I7B5D0) DNA-directed RNA polymerase (Fragment) ... 128 4e-27
Q5I3E1_9HOMO (tr|Q5I3E1) DNA-directed RNA polymerase (Fragment) ... 128 4e-27
Q01DV6_OSTTA (tr|Q01DV6) DNA-directed RNA polymerase OS=Ostreoco... 128 4e-27
G9JY80_9FUNG (tr|G9JY80) DNA-directed RNA polymerase (Fragment) ... 128 4e-27
F4Q7Q1_DICFS (tr|F4Q7Q1) DNA-directed RNA polymerase OS=Dictyost... 128 4e-27
A5H275_9LECA (tr|A5H275) DNA-directed RNA polymerase (Fragment) ... 128 4e-27
L8WR47_9HOMO (tr|L8WR47) DNA-directed RNA polymerase OS=Rhizocto... 128 4e-27
A5H279_9LECA (tr|A5H279) DNA-directed RNA polymerase (Fragment) ... 128 5e-27
A7J590_9LECA (tr|A7J590) DNA-directed RNA polymerase (Fragment) ... 128 5e-27
K7X292_9EURO (tr|K7X292) DNA-directed RNA polymerase (Fragment) ... 128 5e-27
J7S636_KAZNA (tr|J7S636) DNA-directed RNA polymerase OS=Kazachst... 128 5e-27
Q2PYR3_9FUNG (tr|Q2PYR3) DNA-directed RNA polymerase (Fragment) ... 128 5e-27
R7QR74_CHOCR (tr|R7QR74) Stackhouse genomic scaffold, scaffold_5... 128 5e-27
H3GA78_PHYRM (tr|H3GA78) DNA-directed RNA polymerase OS=Phytopht... 128 6e-27
G4ZH68_PHYSP (tr|G4ZH68) DNA-directed RNA polymerase OS=Phytopht... 127 6e-27
I7B521_9ASCO (tr|I7B521) DNA-directed RNA polymerase (Fragment) ... 127 6e-27
A5H2E3_9LECA (tr|A5H2E3) DNA-directed RNA polymerase (Fragment) ... 127 7e-27
A1YIC5_9FUNG (tr|A1YIC5) DNA-directed RNA polymerase (Fragment) ... 127 7e-27
B1L739_KORCO (tr|B1L739) DNA-directed RNA polymerase OS=Korarcha... 127 7e-27
Q2PYQ7_GLOIN (tr|Q2PYQ7) DNA-directed RNA polymerase (Fragment) ... 127 7e-27
Q0PQ14_9LECA (tr|Q0PQ14) DNA-directed RNA polymerase (Fragment) ... 127 8e-27
G9JY83_9FUNG (tr|G9JY83) DNA-directed RNA polymerase (Fragment) ... 127 8e-27
A6GVG0_9GLOM (tr|A6GVG0) DNA-directed RNA polymerase (Fragment) ... 127 8e-27
Q2PYT1_9FUNG (tr|Q2PYT1) DNA-directed RNA polymerase (Fragment) ... 127 8e-27
Q0PQ10_9LECA (tr|Q0PQ10) DNA-directed RNA polymerase (Fragment) ... 127 8e-27
K7F228_PELSI (tr|K7F228) DNA-directed RNA polymerase OS=Pelodisc... 127 8e-27
A1YIA9_9ASCO (tr|A1YIA9) DNA-directed RNA polymerase (Fragment) ... 127 8e-27
A1D1U9_NEOFI (tr|A1D1U9) DNA-directed RNA polymerase OS=Neosarto... 127 8e-27
K7THT8_9HYPO (tr|K7THT8) DNA-directed RNA polymerase OS=Periglan... 127 9e-27
Q0PPZ8_9LECA (tr|Q0PPZ8) DNA-directed RNA polymerase (Fragment) ... 127 9e-27
I7B961_9ASCO (tr|I7B961) DNA-directed RNA polymerase (Fragment) ... 127 9e-27
F8QSY1_TRIFO (tr|F8QSY1) DNA-directed RNA polymerase (Fragment) ... 127 9e-27
A1YIC2_9FUNG (tr|A1YIC2) DNA-directed RNA polymerase (Fragment) ... 127 9e-27
Q010D7_OSTTA (tr|Q010D7) DNA-directed RNA polymerase OS=Ostreoco... 127 9e-27
Q7XTZ3_ORYSJ (tr|Q7XTZ3) DNA-directed RNA polymerase OS=Oryza sa... 127 9e-27
N0BKJ3_9EURY (tr|N0BKJ3) DNA-directed RNA polymerase, subunit A ... 127 9e-27
Q4WRY3_ASPFU (tr|Q4WRY3) DNA-directed RNA polymerase OS=Neosarto... 127 9e-27
B0XMU6_ASPFC (tr|B0XMU6) DNA-directed RNA polymerase OS=Neosarto... 127 9e-27
Q71EU0_CYCRE (tr|Q71EU0) DNA-directed RNA polymerase (Fragment) ... 127 1e-26
H9KIU3_APIME (tr|H9KIU3) DNA-directed RNA polymerase OS=Apis mel... 127 1e-26
I7AB23_9ASCO (tr|I7AB23) DNA-directed RNA polymerase (Fragment) ... 127 1e-26
A6GVG1_9GLOM (tr|A6GVG1) DNA-directed RNA polymerase (Fragment) ... 127 1e-26
A5H2E2_9LECA (tr|A5H2E2) DNA-directed RNA polymerase (Fragment) ... 127 1e-26
J8Q283_SACAR (tr|J8Q283) DNA-directed RNA polymerase OS=Saccharo... 127 1e-26
D3BJK4_POLPA (tr|D3BJK4) DNA-directed RNA polymerase OS=Polyspho... 127 1e-26
M7B9D5_CHEMY (tr|M7B9D5) DNA-directed RNA polymerase III subunit... 127 1e-26
Q0D054_ASPTN (tr|Q0D054) DNA-directed RNA polymerase OS=Aspergil... 127 1e-26
M4N608_9ASCO (tr|M4N608) RNA polymerase I (Fragment) OS=Schizobl... 127 1e-26
K7WMF5_9EURO (tr|K7WMF5) DNA-directed RNA polymerase (Fragment) ... 127 1e-26
A5H2E9_9LECA (tr|A5H2E9) DNA-directed RNA polymerase (Fragment) ... 127 1e-26
I7B591_9ASCO (tr|I7B591) DNA-directed RNA polymerase (Fragment) ... 127 1e-26
H0Z7T8_TAEGU (tr|H0Z7T8) DNA-directed RNA polymerase OS=Taeniopy... 126 1e-26
Q2PYS7_BATDE (tr|Q2PYS7) DNA-directed RNA polymerase (Fragment) ... 126 1e-26
G8ZUZ8_TORDC (tr|G8ZUZ8) DNA-directed RNA polymerase OS=Torulasp... 126 1e-26
R0K3C4_ANAPL (tr|R0K3C4) DNA-directed RNA polymerase III subunit... 126 1e-26
A6GVF9_9GLOM (tr|A6GVF9) DNA-directed RNA polymerase (Fragment) ... 126 1e-26
E9BZL9_CAPO3 (tr|E9BZL9) DNA-directed RNA polymerase OS=Capsaspo... 126 1e-26
I7AB39_9ASCO (tr|I7AB39) DNA-directed RNA polymerase (Fragment) ... 126 1e-26
F1NIK7_CHICK (tr|F1NIK7) DNA-directed RNA polymerase OS=Gallus g... 126 1e-26
K7TW01_9HYPO (tr|K7TW01) DNA-directed RNA polymerase OS=Epichloe... 126 1e-26
K7TLD6_9HYPO (tr|K7TLD6) DNA-directed RNA polymerase OS=Epichloe... 126 2e-26
K7TDS0_9HYPO (tr|K7TDS0) DNA-directed RNA polymerase OS=Epichloe... 126 2e-26
A6GVF8_GLOMO (tr|A6GVF8) DNA-directed RNA polymerase (Fragment) ... 126 2e-26
H3AVP5_LATCH (tr|H3AVP5) DNA-directed RNA polymerase (Fragment) ... 126 2e-26
F8S1G6_9EUGL (tr|F8S1G6) DNA-directed RNA polymerase (Fragment) ... 126 2e-26
G2X944_VERDV (tr|G2X944) DNA-directed RNA polymerase OS=Verticil... 126 2e-26
K7UAT3_EPITY (tr|K7UAT3) DNA-directed RNA polymerase OS=Epichloe... 126 2e-26
K7TLD1_EPIEL (tr|K7TLD1) DNA-directed RNA polymerase OS=Epichloe... 126 2e-26
Q2PYQ5_9FUNG (tr|Q2PYQ5) DNA-directed RNA polymerase (Fragment) ... 126 2e-26
F4NYT6_BATDJ (tr|F4NYT6) DNA-directed RNA polymerase OS=Batracho... 126 2e-26
K7WPQ0_9EURO (tr|K7WPQ0) DNA-directed RNA polymerase (Fragment) ... 126 2e-26
K7TVY9_EPITY (tr|K7TVY9) DNA-directed RNA polymerase OS=Epichloe... 126 2e-26
K7THT1_9HYPO (tr|K7THT1) DNA-directed RNA polymerase OS=Epichloe... 126 2e-26
K7WHY3_9EURO (tr|K7WHY3) DNA-directed RNA polymerase (Fragment) ... 126 2e-26
E3N5G7_CAERE (tr|E3N5G7) DNA-directed RNA polymerase OS=Caenorha... 126 2e-26
G6FGM6_9EURY (tr|G6FGM6) DNA-directed RNA polymerase OS=Methanol... 126 2e-26
A7TNS6_VANPO (tr|A7TNS6) DNA-directed RNA polymerase OS=Vanderwa... 125 2e-26
G0VJ35_NAUCC (tr|G0VJ35) DNA-directed RNA polymerase OS=Naumovoz... 125 2e-26
K1QQG7_CRAGI (tr|K1QQG7) DNA-directed RNA polymerase OS=Crassost... 125 2e-26
K7TW30_NEOAO (tr|K7TW30) DNA-directed RNA polymerase OS=Neotypho... 125 2e-26
Q2PYT0_9FUNG (tr|Q2PYT0) DNA-directed RNA polymerase (Fragment) ... 125 2e-26
L8G0N1_GEOD2 (tr|L8G0N1) DNA-directed RNA polymerase OS=Geomyces... 125 2e-26
K7UAU5_9HYPO (tr|K7UAU5) DNA-directed RNA polymerase OS=Clavicep... 125 2e-26
I7B533_9ASCO (tr|I7B533) DNA-directed RNA polymerase (Fragment) ... 125 3e-26
A4S3M0_OSTLU (tr|A4S3M0) DNA-directed RNA polymerase OS=Ostreoco... 125 3e-26
Q2PYR9_9FUNG (tr|Q2PYR9) DNA-directed RNA polymerase (Fragment) ... 125 3e-26
Q16SE0_AEDAE (tr|Q16SE0) DNA-directed RNA polymerase OS=Aedes ae... 125 3e-26
Q16PD2_AEDAE (tr|Q16PD2) DNA-directed RNA polymerase OS=Aedes ae... 125 3e-26
I7AW78_9SACH (tr|I7AW78) DNA-directed RNA polymerase (Fragment) ... 125 3e-26
A1YIB7_GLOMO (tr|A1YIB7) DNA-directed RNA polymerase (Fragment) ... 125 3e-26
I7AB28_9ASCO (tr|I7AB28) DNA-directed RNA polymerase (Fragment) ... 125 3e-26
K7TLE2_BALOB (tr|K7TLE2) DNA-directed RNA polymerase OS=Balansia... 125 3e-26
I7A0B8_PICPA (tr|I7A0B8) DNA-directed RNA polymerase (Fragment) ... 125 3e-26
Q5ACI7_CANAL (tr|Q5ACI7) DNA-directed RNA polymerase OS=Candida ... 125 3e-26
K7TDS3_9HYPO (tr|K7TDS3) DNA-directed RNA polymerase OS=Neotypho... 125 3e-26
H2AUV0_KAZAF (tr|H2AUV0) DNA-directed RNA polymerase OS=Kazachst... 125 3e-26
M4ALC5_XIPMA (tr|M4ALC5) DNA-directed RNA polymerase OS=Xiphopho... 125 3e-26
E7R7W7_PICAD (tr|E7R7W7) DNA-directed RNA polymerase OS=Pichia a... 125 4e-26
O00820_ACACA (tr|O00820) DNA-directed RNA polymerase (Fragment) ... 125 4e-26
A1YIA5_SCLSC (tr|A1YIA5) DNA-directed RNA polymerase (Fragment) ... 125 4e-26
A6GVF7_GLOIN (tr|A6GVF7) DNA-directed RNA polymerase (Fragment) ... 125 4e-26
C4YN85_CANAW (tr|C4YN85) DNA-directed RNA polymerase OS=Candida ... 125 4e-26
I7B5D4_9ASCO (tr|I7B5D4) DNA-directed RNA polymerase (Fragment) ... 125 4e-26
D6WDY7_TRICA (tr|D6WDY7) DNA-directed RNA polymerase OS=Triboliu... 125 4e-26
Q2TUN7_9CONI (tr|Q2TUN7) DNA-directed RNA polymerase (Fragment) ... 125 4e-26
I7B946_PICGM (tr|I7B946) DNA-directed RNA polymerase (Fragment) ... 125 4e-26
Q0PQ03_9LECA (tr|Q0PQ03) DNA-directed RNA polymerase (Fragment) ... 125 4e-26
G3B9E4_CANTC (tr|G3B9E4) DNA-directed RNA polymerase OS=Candida ... 125 4e-26
I2JV22_DEKBR (tr|I2JV22) DNA-directed RNA polymerase (Fragment) ... 125 4e-26
J3MQH6_ORYBR (tr|J3MQH6) DNA-directed RNA polymerase OS=Oryza br... 125 4e-26
I7B8Y2_9ASCO (tr|I7B8Y2) DNA-directed RNA polymerase (Fragment) ... 125 4e-26
G4MT89_MAGO7 (tr|G4MT89) DNA-directed RNA polymerase OS=Magnapor... 125 4e-26
Q4S3H6_TETNG (tr|Q4S3H6) DNA-directed RNA polymerase (Fragment) ... 125 4e-26
E0VQ06_PEDHC (tr|E0VQ06) DNA-directed RNA polymerase OS=Pediculu... 125 5e-26
C5MI79_CANTT (tr|C5MI79) DNA-directed RNA polymerase (Fragment) ... 125 5e-26
E7QKQ6_YEASZ (tr|E7QKQ6) DNA-directed RNA polymerase OS=Saccharo... 125 5e-26
E7KII6_YEASA (tr|E7KII6) DNA-directed RNA polymerase OS=Saccharo... 125 5e-26
C8ZI78_YEAS8 (tr|C8ZI78) DNA-directed RNA polymerase OS=Saccharo... 125 5e-26
B5VS07_YEAS6 (tr|B5VS07) DNA-directed RNA polymerase OS=Saccharo... 125 5e-26
B3LJF9_YEAS1 (tr|B3LJF9) DNA-directed RNA polymerase OS=Saccharo... 125 5e-26
G2WMZ2_YEASK (tr|G2WMZ2) DNA-directed RNA polymerase OS=Saccharo... 125 5e-26
C7GMM0_YEAS2 (tr|C7GMM0) DNA-directed RNA polymerase OS=Saccharo... 125 5e-26
N1NYF1_YEASX (tr|N1NYF1) Rpo31p OS=Saccharomyces cerevisiae CEN.... 125 5e-26
A6ZNW4_YEAS7 (tr|A6ZNW4) DNA-directed RNA polymerase OS=Saccharo... 125 5e-26
L7IV99_MAGOR (tr|L7IV99) DNA-directed RNA polymerase OS=Magnapor... 125 5e-26
L7I1J8_MAGOR (tr|L7I1J8) DNA-directed RNA polymerase OS=Magnapor... 125 5e-26
H0GNN4_9SACH (tr|H0GNN4) DNA-directed RNA polymerase OS=Saccharo... 125 5e-26
D8QLL1_SCHCM (tr|D8QLL1) DNA-directed RNA polymerase OS=Schizoph... 125 5e-26
E3GYR8_METFV (tr|E3GYR8) DNA-directed RNA polymerase OS=Methanot... 124 5e-26
A6GVG2_9GLOM (tr|A6GVG2) DNA-directed RNA polymerase (Fragment) ... 124 5e-26
H2KUH4_CLOSI (tr|H2KUH4) DNA-directed RNA polymerase OS=Clonorch... 124 5e-26
R8BGC8_9PEZI (tr|R8BGC8) Putative dna-directed rna polymerase ii... 124 5e-26
C1MI48_MICPC (tr|C1MI48) DNA-directed RNA polymerase OS=Micromon... 124 5e-26
Q2PYS2_9FUNG (tr|Q2PYS2) DNA-directed RNA polymerase (Fragment) ... 124 5e-26
G2XSR8_BOTF4 (tr|G2XSR8) DNA-directed RNA polymerase OS=Botryoti... 124 5e-26
I7B959_9ASCO (tr|I7B959) DNA-directed RNA polymerase (Fragment) ... 124 6e-26
H3D6J3_TETNG (tr|H3D6J3) DNA-directed RNA polymerase OS=Tetraodo... 124 6e-26
M7TRI5_BOTFU (tr|M7TRI5) Putative dna-directed rna polymerase ii... 124 6e-26
I7A098_PICET (tr|I7A098) DNA-directed RNA polymerase (Fragment) ... 124 6e-26
F2QW17_PICP7 (tr|F2QW17) DNA-directed RNA polymerase OS=Komagata... 124 6e-26
C4R4Y0_PICPG (tr|C4R4Y0) DNA-directed RNA polymerase OS=Komagata... 124 6e-26
A7J581_9LECA (tr|A7J581) DNA-directed RNA polymerase (Fragment) ... 124 6e-26
A7EKT1_SCLS1 (tr|A7EKT1) DNA-directed RNA polymerase OS=Scleroti... 124 6e-26
Q2TUN8_TAXCA (tr|Q2TUN8) DNA-directed RNA polymerase (Fragment) ... 124 6e-26
I6ZHJ5_ENCRO (tr|I6ZHJ5) DNA-directed RNA polymerase OS=Encephal... 124 6e-26
F8V7J7_9MICR (tr|F8V7J7) DNA-directed RNA polymerase (Fragment) ... 124 6e-26
G8BX78_TETPH (tr|G8BX78) DNA-directed RNA polymerase OS=Tetrapis... 124 6e-26
Q2PYR0_9FUNG (tr|Q2PYR0) DNA-directed RNA polymerase (Fragment) ... 124 6e-26
A1YIB4_9FUNG (tr|A1YIB4) DNA-directed RNA polymerase (Fragment) ... 124 7e-26
A5H2E7_9LECA (tr|A5H2E7) DNA-directed RNA polymerase (Fragment) ... 124 7e-26
R4WAL8_9HYPO (tr|R4WAL8) RNA polymerase II largest subunit (Frag... 124 7e-26
Q2PYR8_GLOMO (tr|Q2PYR8) DNA-directed RNA polymerase (Fragment) ... 124 7e-26
A5H286_9LECA (tr|A5H286) DNA-directed RNA polymerase (Fragment) ... 124 7e-26
J9IL94_9SPIT (tr|J9IL94) DNA-directed RNA polymerase OS=Oxytrich... 124 7e-26
I7AAX3_DEKBR (tr|I7AAX3) DNA-directed RNA polymerase (Fragment) ... 124 7e-26
M4MG58_9MICR (tr|M4MG58) RNA polymerase II largest subunit (Frag... 124 7e-26
H2DFX4_9LECA (tr|H2DFX4) DNA-directed RNA polymerase OS=Peltiger... 124 7e-26
Q0DKN9_ORYSJ (tr|Q0DKN9) DNA-directed RNA polymerase OS=Oryza sa... 124 7e-26
M4MEG1_9MICR (tr|M4MEG1) RNA polymerase II largest subunit (Frag... 124 7e-26
A8A925_IGNH4 (tr|A8A925) DNA-directed RNA polymerase OS=Ignicocc... 124 7e-26
F1S2E6_PIG (tr|F1S2E6) DNA-directed RNA polymerase OS=Sus scrofa... 124 7e-26
I6UBI0_ENCHA (tr|I6UBI0) DNA-directed RNA polymerase OS=Encephal... 124 8e-26
I1Z9N4_9LECA (tr|I1Z9N4) DNA-directed RNA polymerase OS=Peltiger... 124 8e-26
I1GHV6_AMPQE (tr|I1GHV6) DNA-directed RNA polymerase OS=Amphimed... 124 8e-26
F8V7L0_ENCHE (tr|F8V7L0) DNA-directed RNA polymerase (Fragment) ... 124 8e-26
Q5WMZ9_ORYSJ (tr|Q5WMZ9) DNA-directed RNA polymerase OS=Oryza sa... 124 8e-26
G9JY84_9FUNG (tr|G9JY84) DNA-directed RNA polymerase (Fragment) ... 124 8e-26
G9JY85_MORAP (tr|G9JY85) DNA-directed RNA polymerase (Fragment) ... 124 8e-26
I7AAU4_9ASCO (tr|I7AAU4) DNA-directed RNA polymerase (Fragment) ... 124 8e-26
Q71ET4_AMBTC (tr|Q71ET4) DNA-directed RNA polymerase (Fragment) ... 124 9e-26
F6H0D9_VITVI (tr|F6H0D9) DNA-directed RNA polymerase OS=Vitis vi... 124 9e-26
I7AAW3_9SACH (tr|I7AAW3) DNA-directed RNA polymerase (Fragment) ... 124 9e-26
I1PSI4_ORYGL (tr|I1PSI4) DNA-directed RNA polymerase OS=Oryza gl... 124 9e-26
B7SNW9_ILLPA (tr|B7SNW9) DNA-directed RNA polymerase (Fragment) ... 124 9e-26
M7T4E7_9PEZI (tr|M7T4E7) Putative rna polymerase ii largest subu... 124 9e-26
A7TTU2_VANPO (tr|A7TTU2) DNA-directed RNA polymerase (Fragment) ... 124 9e-26
B9FZ53_ORYSJ (tr|B9FZ53) DNA-directed RNA polymerase OS=Oryza sa... 124 1e-25
A5H2E5_9LECA (tr|A5H2E5) DNA-directed RNA polymerase (Fragment) ... 124 1e-25
I7AAT9_WICCA (tr|I7AAT9) DNA-directed RNA polymerase (Fragment) ... 124 1e-25
I7B5B3_9ASCO (tr|I7B5B3) DNA-directed RNA polymerase (Fragment) ... 124 1e-25
E6ZHI0_DICLA (tr|E6ZHI0) DNA-directed RNA polymerase OS=Dicentra... 124 1e-25
B7SNX0_LIRTU (tr|B7SNX0) DNA-directed RNA polymerase (Fragment) ... 124 1e-25
A7J587_9LECA (tr|A7J587) DNA-directed RNA polymerase (Fragment) ... 124 1e-25
E9EC10_METAQ (tr|E9EC10) DNA-directed RNA polymerase OS=Metarhiz... 123 1e-25
I7AB21_PACTA (tr|I7AB21) DNA-directed RNA polymerase (Fragment) ... 123 1e-25
Q0PQ01_9LECA (tr|Q0PQ01) DNA-directed RNA polymerase (Fragment) ... 123 1e-25
G2X8H3_VERDV (tr|G2X8H3) DNA-directed RNA polymerase OS=Verticil... 123 1e-25
A8PU11_BRUMA (tr|A8PU11) DNA-directed RNA polymerase OS=Brugia m... 123 1e-25
K5X834_PHACS (tr|K5X834) DNA-directed RNA polymerase OS=Phaneroc... 123 1e-25
H2APV4_KAZAF (tr|H2APV4) DNA-directed RNA polymerase OS=Kazachst... 123 1e-25
E0S629_ENCIT (tr|E0S629) DNA-directed RNA polymerase OS=Encephal... 123 1e-25
C9SR21_VERA1 (tr|C9SR21) DNA-directed RNA polymerase OS=Verticil... 123 1e-25
M8C8M0_AEGTA (tr|M8C8M0) DNA-directed RNA polymerase II subunit ... 123 1e-25
I7B971_9ASCO (tr|I7B971) DNA-directed RNA polymerase (Fragment) ... 123 1e-25
N1JNX2_ERYGR (tr|N1JNX2) DNA-directed RNA polymerase III subunit... 123 1e-25
J4WLL9_BEAB2 (tr|J4WLL9) DNA-directed RNA polymerase OS=Beauveri... 123 1e-25
I7B5B8_9SACH (tr|I7B5B8) DNA-directed RNA polymerase (Fragment) ... 123 1e-25
H2UBT1_TAKRU (tr|H2UBT1) DNA-directed RNA polymerase OS=Takifugu... 123 1e-25
B8BAW1_ORYSI (tr|B8BAW1) DNA-directed RNA polymerase OS=Oryza sa... 123 1e-25
C1E5P6_MICSR (tr|C1E5P6) DNA-directed RNA polymerase OS=Micromon... 123 1e-25
H2UBT0_TAKRU (tr|H2UBT0) DNA-directed RNA polymerase OS=Takifugu... 123 1e-25
I7A0B2_9ASCO (tr|I7A0B2) DNA-directed RNA polymerase (Fragment) ... 123 2e-25
F2HH87_9CRYP (tr|F2HH87) DNA-directed RNA polymerase OS=Cryptomo... 123 2e-25
M3J5V2_CANMA (tr|M3J5V2) DNA-directed RNA polymerase (Fragment) ... 123 2e-25
K0KNL6_WICCF (tr|K0KNL6) DNA-directed RNA polymerase OS=Wickerha... 123 2e-25
H3G223_PRIPA (tr|H3G223) DNA-directed RNA polymerase OS=Pristion... 123 2e-25
Q2TUN9_THUOC (tr|Q2TUN9) DNA-directed RNA polymerase (Fragment) ... 123 2e-25
K7TDS7_CLAFS (tr|K7TDS7) DNA-directed RNA polymerase OS=Clavicep... 123 2e-25
G8Y2U0_PICSO (tr|G8Y2U0) DNA-directed RNA polymerase OS=Pichia s... 123 2e-25
K7UAT9_9HYPO (tr|K7UAT9) DNA-directed RNA polymerase OS=Neotypho... 123 2e-25
B6H9U6_PENCW (tr|B6H9U6) DNA-directed RNA polymerase OS=Penicill... 123 2e-25
I3KGS1_ORENI (tr|I3KGS1) DNA-directed RNA polymerase OS=Oreochro... 123 2e-25
L2GLN2_VITCO (tr|L2GLN2) DNA-directed RNA polymerase OS=Vittafor... 123 2e-25
I3EQC3_NEMP1 (tr|I3EQC3) DNA-directed RNA polymerase OS=Nematoci... 123 2e-25
I3EKG9_NEMP3 (tr|I3EKG9) DNA-directed RNA polymerase OS=Nematoci... 123 2e-25
F7GTY1_MACMU (tr|F7GTY1) DNA-directed RNA polymerase OS=Macaca m... 123 2e-25
K0KEX7_WICCF (tr|K0KEX7) DNA-directed RNA polymerase OS=Wickerha... 123 2e-25
>G7LG09_MEDTR (tr|G7LG09) DNA-directed RNA polymerase OS=Medicago truncatula
GN=MTR_8g038990 PE=3 SV=1
Length = 2032
Score = 762 bits (1967), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/433 (85%), Positives = 407/433 (93%)
Query: 1 MSSDPSMTFLRKLLRKVEIIRSSRSGEPNFESHEVEANDLQSVVDQYLQIRGCAKPARDI 60
MSSDP++T LRKLLRKVE+IRSSRSGEPNFESH+VEANDLQSVVDQYLQIRG +K ARDI
Sbjct: 316 MSSDPALTILRKLLRKVEVIRSSRSGEPNFESHQVEANDLQSVVDQYLQIRGTSKAARDI 375
Query: 61 ETHFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRI 120
ETH+GVNKEL+D+S KAWL+KM++LFI KGSGFSSR+VITGDGYK+INEVGIPLE+AQRI
Sbjct: 376 ETHYGVNKELNDSSTKAWLEKMRTLFIRKGSGFSSRNVITGDGYKKINEVGIPLEVAQRI 435
Query: 121 TFEERVNLHNMCFLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDI 180
TFEERV++HN+ +LQKLVDENLCL YKEG+STYSLREGSKGHTYLKPGQIVHRRIMDGD
Sbjct: 436 TFEERVSIHNIHYLQKLVDENLCLTYKEGMSTYSLREGSKGHTYLKPGQIVHRRIMDGDT 495
Query: 181 VFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEV 240
VFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEV
Sbjct: 496 VFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEV 555
Query: 241 VELFSVEKQLLSSHSGNLNLQLSTDSLLSLKMLVKKGFMDRAAANQLAMFLSLPLPRPAL 300
+ELFSVEKQLLSSHSGNLNLQLS DSLLSLKMLVK F+DR AANQ+AMFL LPLP PAL
Sbjct: 556 LELFSVEKQLLSSHSGNLNLQLSADSLLSLKMLVKSCFLDRVAANQMAMFLLLPLPMPAL 615
Query: 301 LKAGSGDSYWTSIQILQCALPLSFDCTGGRYLIRQSDILEFDLSRDVLPAVINEIAASVF 360
LKA +GDSYWTSIQILQCALP SFDCTGGRYLIRQ +ILEFD +RD+LP++INEIAAS+F
Sbjct: 616 LKATTGDSYWTSIQILQCALPFSFDCTGGRYLIRQREILEFDFTRDILPSIINEIAASIF 675
Query: 361 FGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLR 420
F KGPQEALNFFDV+QP LME+IF++GFSVGL DFSIS AVKRV +R+IGKVSPLL QLR
Sbjct: 676 FSKGPQEALNFFDVIQPFLMENIFAHGFSVGLQDFSISRAVKRVINRSIGKVSPLLRQLR 735
Query: 421 FIYNELVAQQLEK 433
+Y ELVAQQLEK
Sbjct: 736 GMYKELVAQQLEK 748
>K7MDF5_SOYBN (tr|K7MDF5) DNA-directed RNA polymerase OS=Glycine max PE=3 SV=1
Length = 2082
Score = 762 bits (1967), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/435 (85%), Positives = 404/435 (92%)
Query: 1 MSSDPSMTFLRKLLRKVEIIRSSRSGEPNFESHEVEANDLQSVVDQYLQIRGCAKPARDI 60
MSSDPS+T LRKLLRKVEII+SSRSGEPNFESH VEANDLQSVVDQY QIRG +KPARDI
Sbjct: 234 MSSDPSITILRKLLRKVEIIKSSRSGEPNFESHHVEANDLQSVVDQYFQIRGTSKPARDI 293
Query: 61 ETHFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRI 120
ETHFGVNKEL+ +S KAWL+KM++LFI KGSGFSSR+VITGD YKRINEVGIP+E+AQRI
Sbjct: 294 ETHFGVNKELTASSTKAWLEKMRTLFIRKGSGFSSRNVITGDCYKRINEVGIPVEVAQRI 353
Query: 121 TFEERVNLHNMCFLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDI 180
TFEERVN+HN+ +LQKLVDE+LCL YKEG STYSLREGSKGH YLKPGQIVHRRIMDGDI
Sbjct: 354 TFEERVNIHNIRYLQKLVDEHLCLTYKEGGSTYSLREGSKGHIYLKPGQIVHRRIMDGDI 413
Query: 181 VFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEV 240
VFINRPPTTHKHSLQAL VYIH+DHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEV
Sbjct: 414 VFINRPPTTHKHSLQALYVYIHEDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEV 473
Query: 241 VELFSVEKQLLSSHSGNLNLQLSTDSLLSLKMLVKKGFMDRAAANQLAMFLSLPLPRPAL 300
VELFSVE QLLSSHSGNLNLQLSTDSLLSLKMLVK+ F DRAAANQLAMF+ LPLPRPAL
Sbjct: 474 VELFSVENQLLSSHSGNLNLQLSTDSLLSLKMLVKRCFFDRAAANQLAMFILLPLPRPAL 533
Query: 301 LKAGSGDSYWTSIQILQCALPLSFDCTGGRYLIRQSDILEFDLSRDVLPAVINEIAASVF 360
LKA SGD+ WTSIQILQCALPL FDCTGGRYLIRQS+ILEF+ SRDVLPA +NEIAASVF
Sbjct: 534 LKASSGDACWTSIQILQCALPLGFDCTGGRYLIRQSEILEFEFSRDVLPATVNEIAASVF 593
Query: 361 FGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLR 420
FGKGP+EALNFFDVLQP LMES+F+ GFSV L +FSIS A+KR+ ++IGKVS LLYQLR
Sbjct: 594 FGKGPKEALNFFDVLQPFLMESLFAEGFSVSLEEFSISRAIKRIIRKSIGKVSSLLYQLR 653
Query: 421 FIYNELVAQQLEKHM 435
+YNELVAQQLEKH+
Sbjct: 654 SLYNELVAQQLEKHI 668
>I1MIR6_SOYBN (tr|I1MIR6) DNA-directed RNA polymerase OS=Glycine max PE=3 SV=2
Length = 2098
Score = 761 bits (1964), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/435 (85%), Positives = 404/435 (92%)
Query: 1 MSSDPSMTFLRKLLRKVEIIRSSRSGEPNFESHEVEANDLQSVVDQYLQIRGCAKPARDI 60
MSSDPS+T LRKLLRKVEII+SSRSGEPNFESH VEANDLQSVVDQY QIRG +KPARDI
Sbjct: 234 MSSDPSITILRKLLRKVEIIKSSRSGEPNFESHHVEANDLQSVVDQYFQIRGTSKPARDI 293
Query: 61 ETHFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRI 120
ETHFGVNKEL+ +S KAWL+KM++LFI KGSGFSSR+VITGD YKRINEVGIP+E+AQRI
Sbjct: 294 ETHFGVNKELTASSTKAWLEKMRTLFIRKGSGFSSRNVITGDCYKRINEVGIPVEVAQRI 353
Query: 121 TFEERVNLHNMCFLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDI 180
TFEERVN+HN+ +LQKLVDE+LCL YKEG STYSLREGSKGH YLKPGQIVHRRIMDGDI
Sbjct: 354 TFEERVNIHNIRYLQKLVDEHLCLTYKEGGSTYSLREGSKGHIYLKPGQIVHRRIMDGDI 413
Query: 181 VFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEV 240
VFINRPPTTHKHSLQAL VYIH+DHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEV
Sbjct: 414 VFINRPPTTHKHSLQALYVYIHEDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEV 473
Query: 241 VELFSVEKQLLSSHSGNLNLQLSTDSLLSLKMLVKKGFMDRAAANQLAMFLSLPLPRPAL 300
VELFSVE QLLSSHSGNLNLQLSTDSLLSLKMLVK+ F DRAAANQLAMF+ LPLPRPAL
Sbjct: 474 VELFSVENQLLSSHSGNLNLQLSTDSLLSLKMLVKRCFFDRAAANQLAMFILLPLPRPAL 533
Query: 301 LKAGSGDSYWTSIQILQCALPLSFDCTGGRYLIRQSDILEFDLSRDVLPAVINEIAASVF 360
LKA SGD+ WTSIQILQCALPL FDCTGGRYLIRQS+ILEF+ SRDVLPA +NEIAASVF
Sbjct: 534 LKASSGDACWTSIQILQCALPLGFDCTGGRYLIRQSEILEFEFSRDVLPATVNEIAASVF 593
Query: 361 FGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLR 420
FGKGP+EALNFFDVLQP LMES+F+ GFSV L +FSIS A+KR+ ++IGKVS LLYQLR
Sbjct: 594 FGKGPKEALNFFDVLQPFLMESLFAEGFSVSLEEFSISRAIKRIIRKSIGKVSSLLYQLR 653
Query: 421 FIYNELVAQQLEKHM 435
+YNELVAQQLEKH+
Sbjct: 654 SLYNELVAQQLEKHI 668
>K7MDF9_SOYBN (tr|K7MDF9) DNA-directed RNA polymerase OS=Glycine max PE=3 SV=1
Length = 2049
Score = 761 bits (1964), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/435 (85%), Positives = 404/435 (92%)
Query: 1 MSSDPSMTFLRKLLRKVEIIRSSRSGEPNFESHEVEANDLQSVVDQYLQIRGCAKPARDI 60
MSSDPS+T LRKLLRKVEII+SSRSGEPNFESH VEANDLQSVVDQY QIRG +KPARDI
Sbjct: 234 MSSDPSITILRKLLRKVEIIKSSRSGEPNFESHHVEANDLQSVVDQYFQIRGTSKPARDI 293
Query: 61 ETHFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRI 120
ETHFGVNKEL+ +S KAWL+KM++LFI KGSGFSSR+VITGD YKRINEVGIP+E+AQRI
Sbjct: 294 ETHFGVNKELTASSTKAWLEKMRTLFIRKGSGFSSRNVITGDCYKRINEVGIPVEVAQRI 353
Query: 121 TFEERVNLHNMCFLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDI 180
TFEERVN+HN+ +LQKLVDE+LCL YKEG STYSLREGSKGH YLKPGQIVHRRIMDGDI
Sbjct: 354 TFEERVNIHNIRYLQKLVDEHLCLTYKEGGSTYSLREGSKGHIYLKPGQIVHRRIMDGDI 413
Query: 181 VFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEV 240
VFINRPPTTHKHSLQAL VYIH+DHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEV
Sbjct: 414 VFINRPPTTHKHSLQALYVYIHEDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEV 473
Query: 241 VELFSVEKQLLSSHSGNLNLQLSTDSLLSLKMLVKKGFMDRAAANQLAMFLSLPLPRPAL 300
VELFSVE QLLSSHSGNLNLQLSTDSLLSLKMLVK+ F DRAAANQLAMF+ LPLPRPAL
Sbjct: 474 VELFSVENQLLSSHSGNLNLQLSTDSLLSLKMLVKRCFFDRAAANQLAMFILLPLPRPAL 533
Query: 301 LKAGSGDSYWTSIQILQCALPLSFDCTGGRYLIRQSDILEFDLSRDVLPAVINEIAASVF 360
LKA SGD+ WTSIQILQCALPL FDCTGGRYLIRQS+ILEF+ SRDVLPA +NEIAASVF
Sbjct: 534 LKASSGDACWTSIQILQCALPLGFDCTGGRYLIRQSEILEFEFSRDVLPATVNEIAASVF 593
Query: 361 FGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLR 420
FGKGP+EALNFFDVLQP LMES+F+ GFSV L +FSIS A+KR+ ++IGKVS LLYQLR
Sbjct: 594 FGKGPKEALNFFDVLQPFLMESLFAEGFSVSLEEFSISRAIKRIIRKSIGKVSSLLYQLR 653
Query: 421 FIYNELVAQQLEKHM 435
+YNELVAQQLEKH+
Sbjct: 654 SLYNELVAQQLEKHI 668
>K7MDF7_SOYBN (tr|K7MDF7) DNA-directed RNA polymerase OS=Glycine max PE=3 SV=1
Length = 2065
Score = 760 bits (1962), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/435 (85%), Positives = 404/435 (92%)
Query: 1 MSSDPSMTFLRKLLRKVEIIRSSRSGEPNFESHEVEANDLQSVVDQYLQIRGCAKPARDI 60
MSSDPS+T LRKLLRKVEII+SSRSGEPNFESH VEANDLQSVVDQY QIRG +KPARDI
Sbjct: 234 MSSDPSITILRKLLRKVEIIKSSRSGEPNFESHHVEANDLQSVVDQYFQIRGTSKPARDI 293
Query: 61 ETHFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRI 120
ETHFGVNKEL+ +S KAWL+KM++LFI KGSGFSSR+VITGD YKRINEVGIP+E+AQRI
Sbjct: 294 ETHFGVNKELTASSTKAWLEKMRTLFIRKGSGFSSRNVITGDCYKRINEVGIPVEVAQRI 353
Query: 121 TFEERVNLHNMCFLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDI 180
TFEERVN+HN+ +LQKLVDE+LCL YKEG STYSLREGSKGH YLKPGQIVHRRIMDGDI
Sbjct: 354 TFEERVNIHNIRYLQKLVDEHLCLTYKEGGSTYSLREGSKGHIYLKPGQIVHRRIMDGDI 413
Query: 181 VFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEV 240
VFINRPPTTHKHSLQAL VYIH+DHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEV
Sbjct: 414 VFINRPPTTHKHSLQALYVYIHEDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEV 473
Query: 241 VELFSVEKQLLSSHSGNLNLQLSTDSLLSLKMLVKKGFMDRAAANQLAMFLSLPLPRPAL 300
VELFSVE QLLSSHSGNLNLQLSTDSLLSLKMLVK+ F DRAAANQLAMF+ LPLPRPAL
Sbjct: 474 VELFSVENQLLSSHSGNLNLQLSTDSLLSLKMLVKRCFFDRAAANQLAMFILLPLPRPAL 533
Query: 301 LKAGSGDSYWTSIQILQCALPLSFDCTGGRYLIRQSDILEFDLSRDVLPAVINEIAASVF 360
LKA SGD+ WTSIQILQCALPL FDCTGGRYLIRQS+ILEF+ SRDVLPA +NEIAASVF
Sbjct: 534 LKASSGDACWTSIQILQCALPLGFDCTGGRYLIRQSEILEFEFSRDVLPATVNEIAASVF 593
Query: 361 FGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLR 420
FGKGP+EALNFFDVLQP LMES+F+ GFSV L +FSIS A+KR+ ++IGKVS LLYQLR
Sbjct: 594 FGKGPKEALNFFDVLQPFLMESLFAEGFSVSLEEFSISRAIKRIIRKSIGKVSSLLYQLR 653
Query: 421 FIYNELVAQQLEKHM 435
+YNELVAQQLEKH+
Sbjct: 654 SLYNELVAQQLEKHI 668
>K7M0Q7_SOYBN (tr|K7M0Q7) DNA-directed RNA polymerase OS=Glycine max PE=3 SV=1
Length = 2020
Score = 750 bits (1937), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/435 (84%), Positives = 399/435 (91%)
Query: 1 MSSDPSMTFLRKLLRKVEIIRSSRSGEPNFESHEVEANDLQSVVDQYLQIRGCAKPARDI 60
MSSDPSMT LRKLLRKVEII+SSRSGEPNFESH VEANDLQSVVDQY QIRG +KPARDI
Sbjct: 234 MSSDPSMTILRKLLRKVEIIKSSRSGEPNFESHHVEANDLQSVVDQYFQIRGTSKPARDI 293
Query: 61 ETHFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRI 120
ETHFGVNKEL+ +S KAWL+KM++LFI KGSGFSSR+VITGD YKRINEVGIP+E+AQRI
Sbjct: 294 ETHFGVNKELTASSTKAWLEKMRTLFIRKGSGFSSRNVITGDCYKRINEVGIPVEVAQRI 353
Query: 121 TFEERVNLHNMCFLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDI 180
TFEERVN+HN+ +LQKLVDE+LCL YKEGVSTYSLREGSKGH YLKPGQIVHRRIMDGDI
Sbjct: 354 TFEERVNIHNIRYLQKLVDEHLCLTYKEGVSTYSLREGSKGHIYLKPGQIVHRRIMDGDI 413
Query: 181 VFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEV 240
VFINRPPTTHKHSLQAL VYIH+DHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEV
Sbjct: 414 VFINRPPTTHKHSLQALYVYIHEDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEV 473
Query: 241 VELFSVEKQLLSSHSGNLNLQLSTDSLLSLKMLVKKGFMDRAAANQLAMFLSLPLPRPAL 300
VELF+VE QLLSSHSGNLNLQLSTDSLL+LKMLVK+ F+ RAAANQLAMFL LPLPRPAL
Sbjct: 474 VELFAVENQLLSSHSGNLNLQLSTDSLLALKMLVKRCFLGRAAANQLAMFLLLPLPRPAL 533
Query: 301 LKAGSGDSYWTSIQILQCALPLSFDCTGGRYLIRQSDILEFDLSRDVLPAVINEIAASVF 360
LKA S D+ WTSIQILQ ALP+ FDCTGGRYLIRQS+ILEFD SRD LPA INEIAAS+F
Sbjct: 534 LKASSDDACWTSIQILQGALPMGFDCTGGRYLIRQSEILEFDFSRDALPATINEIAASIF 593
Query: 361 FGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLR 420
FGKGP EAL FFDVLQP LMES+F+ GFSV L +FSIS A+KR+ R+IGK S LLYQLR
Sbjct: 594 FGKGPMEALKFFDVLQPFLMESLFAEGFSVSLEEFSISRAIKRIIRRSIGKASSLLYQLR 653
Query: 421 FIYNELVAQQLEKHM 435
+YNELVAQQLEKH+
Sbjct: 654 SLYNELVAQQLEKHI 668
>M5XM01_PRUPE (tr|M5XM01) Uncharacterized protein OS=Prunus persica
GN=PRUPE_ppa000088mg PE=4 SV=1
Length = 1855
Score = 635 bits (1639), Expect = e-180, Method: Compositional matrix adjust.
Identities = 301/435 (69%), Positives = 359/435 (82%)
Query: 1 MSSDPSMTFLRKLLRKVEIIRSSRSGEPNFESHEVEANDLQSVVDQYLQIRGCAKPARDI 60
MS+DPS++ L+K+L++VEIIRSSRSG PNFES VEAN+LQ+++DQYLQ+RG KP+RDI
Sbjct: 233 MSADPSISMLKKVLKQVEIIRSSRSGIPNFESQIVEANELQAIIDQYLQVRGTGKPSRDI 292
Query: 61 ETHFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRI 120
+ FGVNKEL+ +S KAWL+KM++LFI KGSGFSSRSVITGD ++R+NEVGIP EIAQRI
Sbjct: 293 DARFGVNKELNASSTKAWLEKMRTLFIRKGSGFSSRSVITGDAFRRVNEVGIPYEIAQRI 352
Query: 121 TFEERVNLHNMCFLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDI 180
TFEE+VN HN+ +LQ+LVD LCL YK+G STYSLREGSKGHT+L+PGQ+VHRRIMDGD+
Sbjct: 353 TFEEKVNDHNIRYLQELVDSKLCLTYKDGSSTYSLREGSKGHTFLRPGQVVHRRIMDGDL 412
Query: 181 VFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEV 240
VF+NRPPTTHKHSLQAL VY+HDDH VKINPLICGPL ADFDGDC+HLFYPQSLAAKAEV
Sbjct: 413 VFVNRPPTTHKHSLQALQVYVHDDHVVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEV 472
Query: 241 VELFSVEKQLLSSHSGNLNLQLSTDSLLSLKMLVKKGFMDRAAANQLAMFLSLPLPRPAL 300
+ELFSVEKQLLSSHSG NLQL+ D+LLSLKM+ KK F+D+AAA QLAMF S LPRPAL
Sbjct: 473 LELFSVEKQLLSSHSGKPNLQLAADALLSLKMMFKKYFLDKAAAQQLAMFASSSLPRPAL 532
Query: 301 LKAGSGDSYWTSIQILQCALPLSFDCTGGRYLIRQSDILEFDLSRDVLPAVINEIAASVF 360
LKA S SYWT+ QILQ ALP FDC+G YL+ +S+IL D S + AV+N+IA SVF
Sbjct: 533 LKANSAHSYWTAFQILQTALPAHFDCSGDNYLVNKSEILNIDFSTSSVAAVMNDIATSVF 592
Query: 361 FGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLR 420
F KG ++ L FFD LQP+LME++FS GFSVGL DF +S + +NI S LLY LR
Sbjct: 593 FEKGGEDVLKFFDSLQPLLMENLFSEGFSVGLEDFYMSRTSIQDIQKNIQDSSDLLYHLR 652
Query: 421 FIYNELVAQQLEKHM 435
YNE V QL+ +
Sbjct: 653 STYNEFVEFQLQNRI 667
>B9RGA8_RICCO (tr|B9RGA8) DNA-directed RNA polymerase OS=Ricinus communis
GN=RCOM_1452510 PE=3 SV=1
Length = 991
Score = 633 bits (1633), Expect = e-179, Method: Compositional matrix adjust.
Identities = 310/436 (71%), Positives = 359/436 (82%), Gaps = 1/436 (0%)
Query: 1 MSSDPSMTFLRKLLRKVEIIRSSRSGEPNFESHEVEANDLQSVVDQYLQIRGCAKPARDI 60
MSSD S++ L+K+L++VEII+SSRSGEPNFESHEVEA DLQS VDQYLQ+RG AK ARD+
Sbjct: 232 MSSDLSISMLKKVLKQVEIIKSSRSGEPNFESHEVEAVDLQSAVDQYLQVRGTAKSARDV 291
Query: 61 ETHFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRI 120
FGV+KE +D+S KAWL+KM++LFI KGSGFSSRSVITGD YK +NE+GIP EIAQRI
Sbjct: 292 GERFGVHKESNDSSTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKCVNEIGIPSEIAQRI 351
Query: 121 TFEERVNLHNMCFLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDI 180
TFEERVN HNM +LQ+LVD LCL Y++G STYSLREGSKGHT+L+ GQIVHRRIMDGD+
Sbjct: 352 TFEERVNAHNMQYLQELVDNKLCLTYRDGSSTYSLREGSKGHTFLRLGQIVHRRIMDGDM 411
Query: 181 VFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEV 240
VFINRPPTTHKHSLQAL VY+HD HTVKINPLICGPL ADFDGDC+HLFYPQSLAAKAEV
Sbjct: 412 VFINRPPTTHKHSLQALSVYVHDGHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEV 471
Query: 241 VELFSVEKQLLSSHSGNLNLQLSTDSLLSLKMLVKKGFMDRAAANQLAMFL-SLPLPRPA 299
+ELFSVEKQLLSSHSGNLNLQL++DSLLSLK + F+DRAAA QLAMF+ S LP+PA
Sbjct: 472 LELFSVEKQLLSSHSGNLNLQLTSDSLLSLKTMFNTYFLDRAAAQQLAMFVSSSSLPQPA 531
Query: 300 LLKAGSGDSYWTSIQILQCALPLSFDCTGGRYLIRQSDILEFDLSRDVLPAVINEIAASV 359
L KA WT++QILQ ALP FDC+G RYLI +DI++ D SRDV+ AVIN+I S+
Sbjct: 532 LWKAHCSVPIWTALQILQTALPSQFDCSGERYLISNTDIVKVDFSRDVVQAVINDIVISM 591
Query: 360 FFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQL 419
FF KGP FF+ LQP+LMES+FS GFSVGL DF IS A T R+ +S LL QL
Sbjct: 592 FFEKGPDAVFKFFNSLQPLLMESLFSEGFSVGLEDFYISRAAIGGTRRDFKVISSLLSQL 651
Query: 420 RFIYNELVAQQLEKHM 435
R YNEL+A QLE H+
Sbjct: 652 RSTYNELMALQLENHI 667
>F6I5R3_VITVI (tr|F6I5R3) DNA-directed RNA polymerase OS=Vitis vinifera
GN=VIT_13s0067g03120 PE=3 SV=1
Length = 996
Score = 632 bits (1629), Expect = e-178, Method: Compositional matrix adjust.
Identities = 296/435 (68%), Positives = 364/435 (83%)
Query: 1 MSSDPSMTFLRKLLRKVEIIRSSRSGEPNFESHEVEANDLQSVVDQYLQIRGCAKPARDI 60
MSSD S++ L+K+L+++E+I+ SRSGEPNFESH++EAN+LQS ++QYL++RG AK +R +
Sbjct: 230 MSSDLSVSMLKKVLKQIEVIKGSRSGEPNFESHKIEANNLQSSIEQYLEVRGTAKTSRSL 289
Query: 61 ETHFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRI 120
+T FG +KE +++S KAWL+KM++LFI KGSGFSSRSVITGD YKR+NE+G+P EIAQRI
Sbjct: 290 DTRFGSSKEPNESSTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGLPFEIAQRI 349
Query: 121 TFEERVNLHNMCFLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDI 180
TFEERVN+HNM LQ LVDE LCL Y++G+STYSLREGSKGHT+L+PGQ+VHRRIMDGDI
Sbjct: 350 TFEERVNVHNMKHLQNLVDEKLCLTYRDGLSTYSLREGSKGHTFLRPGQVVHRRIMDGDI 409
Query: 181 VFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEV 240
VFINRPPTTHKHSLQAL VY+HDDHTVKINPLICGPL ADFDGDCVHLFYPQSL AKAEV
Sbjct: 410 VFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCVHLFYPQSLGAKAEV 469
Query: 241 VELFSVEKQLLSSHSGNLNLQLSTDSLLSLKMLVKKGFMDRAAANQLAMFLSLPLPRPAL 300
+ELFSVEKQLLSSHSGNLNLQL+TDSLLSLK+L ++ F+++AAA QL MF+S+ LPRPAL
Sbjct: 470 LELFSVEKQLLSSHSGNLNLQLATDSLLSLKVLFERYFLNKAAAQQLVMFVSMSLPRPAL 529
Query: 301 LKAGSGDSYWTSIQILQCALPLSFDCTGGRYLIRQSDILEFDLSRDVLPAVINEIAASVF 360
LK+ WT++QILQ ALP FDC G R+ I +S IL+ D +RDVL +++NEI S+F
Sbjct: 530 LKSPCSGPCWTALQILQTALPSYFDCIGERHWISKSAILKVDYNRDVLQSLVNEIVTSIF 589
Query: 361 FGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLR 420
KGP E L FFD LQP+LME++FS GFSV L DFSI V + +N+ +S LLY LR
Sbjct: 590 SEKGPNEVLKFFDSLQPLLMENLFSEGFSVSLEDFSIPSEVTQNIQKNVEDISSLLYNLR 649
Query: 421 FIYNELVAQQLEKHM 435
+YNEL+ Q E H+
Sbjct: 650 SMYNELLQLQAENHL 664
>B9GM06_POPTR (tr|B9GM06) DNA-directed RNA polymerase OS=Populus trichocarpa
GN=NRPD902 PE=3 SV=1
Length = 842
Score = 625 bits (1613), Expect = e-177, Method: Compositional matrix adjust.
Identities = 294/435 (67%), Positives = 362/435 (83%)
Query: 1 MSSDPSMTFLRKLLRKVEIIRSSRSGEPNFESHEVEANDLQSVVDQYLQIRGCAKPARDI 60
MSSD S++ L+K+L++VE+I+SSRSG PNF++H+ EAN LQS+VD+YLQ+RG K +RD+
Sbjct: 150 MSSDLSISILKKVLKQVEVIKSSRSGAPNFDAHKDEANSLQSMVDRYLQVRGTTKTSRDV 209
Query: 61 ETHFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRI 120
+ +GV K+ S++S KAWL+KM++LFI KGSGFSSRSVITGD Y ++N+VGIP EIAQRI
Sbjct: 210 DVRYGVKKDSSESSTKAWLEKMRTLFIRKGSGFSSRSVITGDAYTKVNQVGIPYEIAQRI 269
Query: 121 TFEERVNLHNMCFLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDI 180
TFEERV++HNM +LQ+LVD LCL Y++G STYSLREGSKGHT+L+PGQ+VHRRI+DGD+
Sbjct: 270 TFEERVSVHNMRYLQELVDNKLCLTYRDGSSTYSLREGSKGHTFLRPGQVVHRRIIDGDV 329
Query: 181 VFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEV 240
VFINRPPTTHKHSLQAL VY+HDDHTVKINPLICGPL ADFDGDCVHLFYPQSLAAKAEV
Sbjct: 330 VFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCVHLFYPQSLAAKAEV 389
Query: 241 VELFSVEKQLLSSHSGNLNLQLSTDSLLSLKMLVKKGFMDRAAANQLAMFLSLPLPRPAL 300
+ELFSVEKQLLSSHSGNLNLQL+TDSLLSLKM+ K F+D++AA QLAMF+S LP+PAL
Sbjct: 390 LELFSVEKQLLSSHSGNLNLQLTTDSLLSLKMIFKACFLDKSAAQQLAMFVSPDLPQPAL 449
Query: 301 LKAGSGDSYWTSIQILQCALPLSFDCTGGRYLIRQSDILEFDLSRDVLPAVINEIAASVF 360
LK YWT+ QILQ ALP F+C+G R+LI S++L+ D +RDV+ ++INEI S+F
Sbjct: 450 LKVNCIRPYWTAHQILQMALPTCFNCSGERFLINNSNVLKVDFNRDVVASMINEILISIF 509
Query: 361 FGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLR 420
F KG L FF+ LQP+LME++FS GFSV L DFSIS AVK+ + +SPLL LR
Sbjct: 510 FEKGSGAVLKFFNALQPLLMENLFSEGFSVSLKDFSISQAVKQSIQESFKVISPLLCNLR 569
Query: 421 FIYNELVAQQLEKHM 435
YNELV Q+E H+
Sbjct: 570 STYNELVELQVENHI 584
>B9GWX9_POPTR (tr|B9GWX9) DNA-directed RNA polymerase OS=Populus trichocarpa
GN=NRPD903 PE=3 SV=1
Length = 924
Score = 615 bits (1587), Expect = e-174, Method: Compositional matrix adjust.
Identities = 295/435 (67%), Positives = 357/435 (82%)
Query: 1 MSSDPSMTFLRKLLRKVEIIRSSRSGEPNFESHEVEANDLQSVVDQYLQIRGCAKPARDI 60
MSSD S++ L+K+L++ E+IRSSRSG PNF++H+ EA LQS+VDQYLQ+RG K +RD+
Sbjct: 232 MSSDLSISMLKKVLKQAEVIRSSRSGAPNFDAHKDEATSLQSMVDQYLQVRGTTKTSRDV 291
Query: 61 ETHFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRI 120
+T +GV KE S+++ KAWL+KM++LFI KGSGFSSRSVITGD Y +N+VGIP EIAQRI
Sbjct: 292 DTRYGVKKESSESTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYTLVNQVGIPYEIAQRI 351
Query: 121 TFEERVNLHNMCFLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDI 180
TFEERV++HNM +LQ+LVD LCL YK+G STYSLREGSKGHT+L+PGQ+VHRRIMDGDI
Sbjct: 352 TFEERVSVHNMRYLQELVDNKLCLTYKDGSSTYSLREGSKGHTFLRPGQVVHRRIMDGDI 411
Query: 181 VFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEV 240
VFINRPPTTHKHSLQAL VY+HDDH VKINPLICGPL ADFDGDCVHLFYPQSLAAKAEV
Sbjct: 412 VFINRPPTTHKHSLQALSVYVHDDHAVKINPLICGPLSADFDGDCVHLFYPQSLAAKAEV 471
Query: 241 VELFSVEKQLLSSHSGNLNLQLSTDSLLSLKMLVKKGFMDRAAANQLAMFLSLPLPRPAL 300
+ELFSVEKQLLSSHSGNLNLQL+TDSLLSLKM+ K F+ ++AA QLAMF+S LP+PAL
Sbjct: 472 LELFSVEKQLLSSHSGNLNLQLTTDSLLSLKMMFKACFLGKSAAQQLAMFISPYLPQPAL 531
Query: 301 LKAGSGDSYWTSIQILQCALPLSFDCTGGRYLIRQSDILEFDLSRDVLPAVINEIAASVF 360
LK +WT+ QILQ ALP F+C+G R+LI S+ L+ D +RDV+ +VINEI S+F
Sbjct: 532 LKVNCFFPHWTAHQILQMALPACFNCSGERFLIINSNFLKVDFNRDVVASVINEILISMF 591
Query: 361 FGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLR 420
F KG L FF+ LQP+LME++FS GFSV L DFSIS AVK+ + +SPLL LR
Sbjct: 592 FEKGSGAVLKFFNSLQPMLMENLFSEGFSVSLEDFSISRAVKQRIPESFKAISPLLCNLR 651
Query: 421 FIYNELVAQQLEKHM 435
+NELV Q+E H+
Sbjct: 652 STFNELVELQVENHI 666
>Q5D868_SPIOL (tr|Q5D868) DNA-directed RNA polymerase (Fragment) OS=Spinacia
oleracea GN=NRPD1b PE=2 SV=1
Length = 1902
Score = 605 bits (1559), Expect = e-170, Method: Compositional matrix adjust.
Identities = 292/445 (65%), Positives = 359/445 (80%), Gaps = 11/445 (2%)
Query: 1 MSSDPSMTFLRKLLRKVEIIRSSRSGEPNFESHEVEANDLQSVVDQYLQIRGCAKPARDI 60
MSSD L+K+LR++E+IRSSRSGEPNFESHEVEANDLQ V QYLQ+RG K AR
Sbjct: 22 MSSDLCSAMLKKVLRQIEVIRSSRSGEPNFESHEVEANDLQVAVSQYLQVRGTGKAARAA 81
Query: 61 ETHFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRI 120
+ +GV+KE +++S KAW++KM++LFISKGSGFSSRSVITGD Y+ +NEVG+P EIAQ++
Sbjct: 82 DNRYGVSKEGNNSS-KAWVEKMRTLFISKGSGFSSRSVITGDAYRAVNEVGVPCEIAQKM 140
Query: 121 TFEERVNLHNMCFLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDI 180
TFEERVN+HN+ +LQ LVD+NLCL +++G+STYSLREGSKGHT+L+ GQ+VHRRIMDGDI
Sbjct: 141 TFEERVNVHNIQYLQGLVDKNLCLTFRDGLSTYSLREGSKGHTFLRLGQMVHRRIMDGDI 200
Query: 181 VFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEV 240
VFINRPPTTHKHSLQAL VYIHDDH VKINPL+CGPL ADFDGDCVHLFYPQSL+A+AEV
Sbjct: 201 VFINRPPTTHKHSLQALRVYIHDDHVVKINPLMCGPLAADFDGDCVHLFYPQSLSARAEV 260
Query: 241 VELFSVEKQLLSSHSGNLNLQLSTDSLLSLKMLVKKGFMDRAAANQLAMFLSLPLPRPAL 300
+ELFSVEKQLLSSHSGNLNLQLSTDSLLSLK + + F+DRA+ANQLAM+ S LP PAL
Sbjct: 261 LELFSVEKQLLSSHSGNLNLQLSTDSLLSLKTMFEVYFLDRASANQLAMYASSLLPSPAL 320
Query: 301 LKAGSGDS----------YWTSIQILQCALPLSFDCTGGRYLIRQSDILEFDLSRDVLPA 350
KA S ++ WT+ Q+LQ ALP F+C G R LI S+IL+ D +RD++ +
Sbjct: 321 WKACSSNAKKKKAHSSGPRWTAQQVLQTALPSHFECHGDRLLIHDSEILKLDFNRDIVAS 380
Query: 351 VINEIAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDFSISGAVKRVTDRNIG 410
VI+++ S+FF K P++AL+FFD LQP+LME++FS GFSV LHDF + + RNI
Sbjct: 381 VISDVLTSLFFNKSPKDALDFFDSLQPLLMENLFSEGFSVSLHDFFFPKSELQNIQRNIQ 440
Query: 411 KVSPLLYQLRFIYNELVAQQLEKHM 435
+SPLL QLR +NELV Q E H+
Sbjct: 441 DLSPLLLQLRSSFNELVQVQFENHI 465
>K4B027_SOLLC (tr|K4B027) DNA-directed RNA polymerase OS=Solanum lycopersicum
GN=Solyc01g096390.2 PE=3 SV=1
Length = 1678
Score = 585 bits (1507), Expect = e-164, Method: Compositional matrix adjust.
Identities = 276/435 (63%), Positives = 343/435 (78%)
Query: 1 MSSDPSMTFLRKLLRKVEIIRSSRSGEPNFESHEVEANDLQSVVDQYLQIRGCAKPARDI 60
MSSD S+T LRK+LR+++II+SSRSG PNFE+HEVEANDLQ+ V QYLQ RG K +RD+
Sbjct: 277 MSSDHSITMLRKVLRQIDIIKSSRSGTPNFEAHEVEANDLQAAVVQYLQFRGTGKASRDV 336
Query: 61 ETHFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRI 120
+ FG++KE +D + KAWL+KMK+LFI KGSGFSSRSVITGD YK + E+G+P EIAQ+I
Sbjct: 337 DKRFGIHKEAADTTTKAWLEKMKTLFIRKGSGFSSRSVITGDPYKGVGEIGLPCEIAQKI 396
Query: 121 TFEERVNLHNMCFLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDI 180
TFEERV+ HNM +LQKLVDE LCL YK+G STYSLREGSKGHT+L+PGQIVHRRIMDGD
Sbjct: 397 TFEERVSQHNMAYLQKLVDEKLCLTYKDGSSTYSLREGSKGHTFLRPGQIVHRRIMDGDT 456
Query: 181 VFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEV 240
VFINRPPTTHKHSLQAL VY+HDDHTVKINPL+CGPL ADFDGDC+HLFYPQSL+AKAEV
Sbjct: 457 VFINRPPTTHKHSLQALSVYVHDDHTVKINPLMCGPLSADFDGDCIHLFYPQSLSAKAEV 516
Query: 241 VELFSVEKQLLSSHSGNLNLQLSTDSLLSLKMLVKKGFMDRAAANQLAMFLSLPLPRPAL 300
+ELF+V KQLLSSH+GN NLQL+TDSLLSLK++ F D+AAA QLAMFL + LP A+
Sbjct: 517 LELFAVGKQLLSSHTGNFNLQLATDSLLSLKLMFSHYFFDKAAAQQLAMFLPMALPDSAV 576
Query: 301 LKAGSGDSYWTSIQILQCALPLSFDCTGGRYLIRQSDILEFDLSRDVLPAVINEIAASVF 360
+ + WT++QIL ALP FD G + I +S L D RD++ +++N++ S++
Sbjct: 577 VDVRKSGAMWTTLQILGAALPDGFDSCGETHTIGKSQFLGIDYHRDLISSILNDVITSIY 636
Query: 361 FGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLR 420
F KGP + L FF+ LQP+LME++ + GFS+ L DF ++ AV+ I +S LL+ LR
Sbjct: 637 FMKGPNDVLKFFNSLQPLLMENLCTEGFSISLRDFYMTKAVRDGIQERIQCMSKLLHHLR 696
Query: 421 FIYNELVAQQLEKHM 435
YNE V QLE H+
Sbjct: 697 SSYNESVEVQLEHHL 711
>D7LEE8_ARALL (tr|D7LEE8) DNA-directed RNA polymerase OS=Arabidopsis lyrata
subsp. lyrata GN=ARALYDRAFT_483042 PE=3 SV=1
Length = 1947
Score = 551 bits (1419), Expect = e-154, Method: Compositional matrix adjust.
Identities = 267/436 (61%), Positives = 340/436 (77%), Gaps = 3/436 (0%)
Query: 1 MSSDPSMTFLRKLLRKVEIIRSSRSGEPNFESHEVEANDLQSVVDQYLQIRGCAKPARDI 60
MS DPS L+ +L+KV I+SSRSGE NFESH+ EAND+ VVD YLQ+RG AK AR+I
Sbjct: 230 MSVDPSRIELKDVLKKVIAIKSSRSGETNFESHKAEANDMFRVVDTYLQVRGTAKAARNI 289
Query: 61 ETHFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRI 120
+ +GV+K +S+KAW KM++LFI KGSGFSSRSVITGD Y+ +NEVGIP+EIAQRI
Sbjct: 290 DMRYGVSKISDSSSSKAWTQKMRTLFIRKGSGFSSRSVITGDAYRHVNEVGIPIEIAQRI 349
Query: 121 TFEERVNLHNMCFLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDI 180
TFEERV++HN+ +LQKLVD+ LCL+Y +G +TYSLR+GSKGHT LKPGQ+VHRR++DGD+
Sbjct: 350 TFEERVSVHNIGYLQKLVDDKLCLSYTQGSTTYSLRDGSKGHTVLKPGQVVHRRVIDGDV 409
Query: 181 VFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEV 240
VFINRPPTTHKHSLQAL VY+H+D+TVKINPL+C PL ADFDGDCVHLFYPQSL+AKAEV
Sbjct: 410 VFINRPPTTHKHSLQALRVYVHEDNTVKINPLMCSPLSADFDGDCVHLFYPQSLSAKAEV 469
Query: 241 VELFSVEKQLLSSHSGNLNLQLSTDSLLSLKMLVKKGFMDRAAANQLAMFLSLPLPRPAL 300
+ELFSVEKQLLSSH+G L LQ+ DSLLSL+++++ F+D+A A QLAM+ SL LP PAL
Sbjct: 470 MELFSVEKQLLSSHTGQLILQMGCDSLLSLRVMLEGVFLDKATAQQLAMYGSLTLPPPAL 529
Query: 301 LKAGSGDSYWTSIQILQCALPLSFDCTGGRYLIRQSDILEFDLSRDVLPAVINEIAASVF 360
K+ WT QILQ A P C G R+++ SD+L+FD D + ++INEI S+F
Sbjct: 530 RKSSKSGPAWTVFQILQLAFPERLSCKGDRFMVDGSDLLKFDFGVDAMASIINEIVTSIF 589
Query: 361 FGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDFSISGA-VKRVTDRNIGKVSPLLYQL 419
KGP+E L FFD LQP+LMES+F+ GFSV L D S+S A + + + I ++SP++ +L
Sbjct: 590 LEKGPKETLGFFDSLQPLLMESLFAEGFSVSLEDLSMSRADMDVIHNLIIREISPMVSRL 649
Query: 420 RFIYNELVAQQLEKHM 435
R Y + + QLE +
Sbjct: 650 RLSYRDEL--QLENSL 663
>R0FV63_9BRAS (tr|R0FV63) Uncharacterized protein OS=Capsella rubella
GN=CARUB_v10022497mg PE=4 SV=1
Length = 1959
Score = 541 bits (1395), Expect = e-151, Method: Compositional matrix adjust.
Identities = 261/436 (59%), Positives = 340/436 (77%), Gaps = 3/436 (0%)
Query: 1 MSSDPSMTFLRKLLRKVEIIRSSRSGEPNFESHEVEANDLQSVVDQYLQIRGCAKPARDI 60
MS DPS L+ +L++V I++SRSGE NFESH+ EAND+ VVD YLQ+RG AK AR +
Sbjct: 230 MSVDPSRIELKDVLKRVVAIKTSRSGETNFESHKAEANDMYRVVDTYLQVRGTAKAARTM 289
Query: 61 ETHFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRI 120
+ + V+K +S+KAW +KM++LFI KGSGFSSRSVITGD Y+ +NEVGIP+EIAQRI
Sbjct: 290 DMRYRVSKISDSSSSKAWTEKMRTLFIRKGSGFSSRSVITGDAYRHVNEVGIPIEIAQRI 349
Query: 121 TFEERVNLHNMCFLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDI 180
TFE+RV++HN+ +LQ+LVD+ LCL+Y +G +TYSLR+GSKGHT LKPGQ+VHRR+MDGD+
Sbjct: 350 TFEDRVSVHNIRYLQELVDKKLCLSYTQGSTTYSLRDGSKGHTELKPGQVVHRRVMDGDV 409
Query: 181 VFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEV 240
VFINRPPTTHKHSLQAL VY+H+D+TVKINPL+C PL ADFDGDCVHLFYPQSL+AKAEV
Sbjct: 410 VFINRPPTTHKHSLQALRVYVHEDNTVKINPLMCSPLSADFDGDCVHLFYPQSLSAKAEV 469
Query: 241 VELFSVEKQLLSSHSGNLNLQLSTDSLLSLKMLVKKGFMDRAAANQLAMFLSLPLPRPAL 300
+ELFSV+KQLLSSH+G L LQ+ DSLLSL++++++ F+D+A A QLAM+ SL LP PAL
Sbjct: 470 MELFSVDKQLLSSHTGQLILQMGCDSLLSLRVMLERVFLDKATAQQLAMYGSLSLPPPAL 529
Query: 301 LKAGSGDSYWTSIQILQCALPLSFDCTGGRYLIRQSDILEFDLSRDVLPAVINEIAASVF 360
K+ WT QILQ A P C G R+++ SD+L FD DV+ ++I+EI S+F
Sbjct: 530 RKSSKSGPAWTVFQILQLAFPERLSCKGDRFMVDGSDLLRFDFGVDVMASIISEIVTSIF 589
Query: 361 FGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDFSISGA-VKRVTDRNIGKVSPLLYQL 419
KGP+EAL FFD LQP+LMES+F+ GFS+ L D S+S A + + + I + SP++ +L
Sbjct: 590 LEKGPKEALGFFDSLQPLLMESLFAEGFSLSLEDLSMSRADMAVIHNLIIRETSPMVSRL 649
Query: 420 RFIYNELVAQQLEKHM 435
R Y + + QLE +
Sbjct: 650 RLSYEDEL--QLENSI 663
>M4C7I4_BRARP (tr|M4C7I4) DNA-directed RNA polymerase OS=Brassica rapa subsp.
pekinensis GN=Bra000162 PE=3 SV=1
Length = 2059
Score = 525 bits (1351), Expect = e-146, Method: Compositional matrix adjust.
Identities = 258/439 (58%), Positives = 329/439 (74%), Gaps = 9/439 (2%)
Query: 1 MSSDPSMTFLRKLLRKVEIIRSSRSGEPNFESHEVEANDLQSVVDQYLQIRGCAKPARDI 60
MS DPS L+ +LRKV I +SRSGE NFESH EAN++ VVD YLQ+RG AKP R+I
Sbjct: 230 MSVDPSRIELKDVLRKVVAINNSRSGETNFESHRAEANEMFRVVDTYLQVRGTAKPTRNI 289
Query: 61 ETHFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRI 120
+ FGV+K +S+KAW +KM++LFI KGSGFSSRSVITGD ++ +NEVGIP+EIA RI
Sbjct: 290 DMRFGVSKISDSSSSKAWTEKMRTLFIRKGSGFSSRSVITGDAFRNVNEVGIPMEIAHRI 349
Query: 121 TFEERVNLHNMCFLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDI 180
TFEERV++HN+ +LQ+LVD +CL+Y +G +TYSLR+GSKGHT LKPGQIVHRR+MDGD+
Sbjct: 350 TFEERVSVHNIGYLQELVDNKMCLSYTQGSTTYSLRDGSKGHTVLKPGQIVHRRVMDGDV 409
Query: 181 VFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEV 240
VFINRPPTTHKHSLQAL VY+H+D+TVKINPL+C PL ADFDGDCVHLFYPQSL AKAEV
Sbjct: 410 VFINRPPTTHKHSLQALRVYVHEDNTVKINPLMCSPLSADFDGDCVHLFYPQSLTAKAEV 469
Query: 241 VELFSVEKQLLSSHSGNLNLQLSTDSLLSLKMLVKKGFMDRAAANQLAMFLSLPLPRPAL 300
+ELFSV+KQL SSH+G L LQL DSLLSL++++++ F+D+A+A QLAM+ S LP PA+
Sbjct: 470 LELFSVDKQLRSSHTGQLILQLGLDSLLSLRVMMEQVFLDKASAQQLAMYGSRSLPPPAV 529
Query: 301 LKAGSGDSYWTSIQILQCALPLSFDCTGGRYLIRQSDILEFDLSRDVLPAVINEIAASVF 360
+K+ WT QILQ A P C G +++ SD+L FD D L ++IN I ++
Sbjct: 530 VKSSKSGPAWTFFQILQLAFPERLSCRGDGFIVGGSDLLSFDFGVDALASIINGIVTAIM 589
Query: 361 FGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDFSIS----GAVKRVTDRNIGKVSPLL 416
KGP+EAL FFD LQP+LME + GFS+ L D S+S G + + R I SP++
Sbjct: 590 VEKGPKEALAFFDSLQPLLMEHLDPQGFSLSLEDLSMSREDMGVIHNLIVREI---SPMV 646
Query: 417 YQLRFIYNELVAQQLEKHM 435
+LR Y + + QLE +
Sbjct: 647 SRLRLSYEDEL--QLENSI 663
>M0SC38_MUSAM (tr|M0SC38) DNA-directed RNA polymerase OS=Musa acuminata subsp.
malaccensis PE=3 SV=1
Length = 1433
Score = 515 bits (1327), Expect = e-143, Method: Compositional matrix adjust.
Identities = 250/435 (57%), Positives = 320/435 (73%)
Query: 1 MSSDPSMTFLRKLLRKVEIIRSSRSGEPNFESHEVEANDLQSVVDQYLQIRGCAKPARDI 60
MSSD S + L+K+L K+E+I+ SRSG P+FES+EVE NDLQS + Y+ +RG K RDI
Sbjct: 23 MSSDISKSLLKKILGKIELIKRSRSGSPSFESYEVETNDLQSSIALYMNLRGTTKAPRDI 82
Query: 61 ETHFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRI 120
F E ++ K WLDK+++LFI KGSGFSSRSVI+GD Y IN VG+P EIA+RI
Sbjct: 83 TRRFAFGNETNEYLTKQWLDKIRTLFIRKGSGFSSRSVISGDPYIGINVVGLPSEIAKRI 142
Query: 121 TFEERVNLHNMCFLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDI 180
TFEERV HN+ LQ +VD LC+ YK+G STY++ GSKGHT LK GQ+++R+I+DGDI
Sbjct: 143 TFEERVTEHNITRLQNVVDSRLCITYKDGSSTYAISVGSKGHTNLKIGQVINRQILDGDI 202
Query: 181 VFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEV 240
VFINRPP+THKHSLQA VYIHDDHTVKINPLIC PLGADFDGDCVH+FYPQSL+AKAEV
Sbjct: 203 VFINRPPSTHKHSLQAFYVYIHDDHTVKINPLICAPLGADFDGDCVHIFYPQSLSAKAEV 262
Query: 241 VELFSVEKQLLSSHSGNLNLQLSTDSLLSLKMLVKKGFMDRAAANQLAMFLSLPLPRPAL 300
+ELFSVEKQLLSSHSG+LNLQL D+ L+LK++ K GF+ + A QL M++S LP PA+
Sbjct: 263 LELFSVEKQLLSSHSGSLNLQLVQDASLALKLIFKSGFIKKEVAQQLGMYVSSMLPPPAI 322
Query: 301 LKAGSGDSYWTSIQILQCALPLSFDCTGGRYLIRQSDILEFDLSRDVLPAVINEIAASVF 360
+KA WT +Q+LQ P DC+G RY IR+S+ILE D +DV+ +++ +I ++
Sbjct: 323 VKATKCGPCWTILQVLQNVFPAFLDCSGERYFIRESEILELDTDQDVVQSLLTDIMTHIY 382
Query: 361 FGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLR 420
KGP E LNFF+ +QP+LME +F GFS+ L DF +S AV +I K S +L QLR
Sbjct: 383 HMKGPMEVLNFFNYIQPLLMEMLFMEGFSICLKDFILSKAVVSEIQGSIQKNSCILNQLR 442
Query: 421 FIYNELVAQQLEKHM 435
+E Q++ H+
Sbjct: 443 SRRDERAELQVQNHL 457
>B8AHU1_ORYSI (tr|B8AHU1) DNA-directed RNA polymerase OS=Oryza sativa subsp.
indica GN=OsI_05888 PE=3 SV=1
Length = 1867
Score = 473 bits (1216), Expect = e-131, Method: Compositional matrix adjust.
Identities = 227/435 (52%), Positives = 315/435 (72%), Gaps = 3/435 (0%)
Query: 1 MSSDPSMTFLRKLLRKVEIIRSSRSGEPNFESHEVEANDLQSVVDQYLQIRGCAKPARDI 60
MS D S++ L+K+L+K+E I+ SR+G PNFESHEVE+ DLQ + QY+ +RG + +D
Sbjct: 236 MSYDISISLLKKVLQKIEQIKKSRAGSPNFESHEVESCDLQLSIAQYIHLRGTTRGPQDN 295
Query: 61 ETHFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRI 120
F ++ + S S K WL+KM++LFISKGSGFSSRSV+TGD Y ++ +G+P E+A+RI
Sbjct: 296 TKRFAISTDPSALSTKQWLEKMRTLFISKGSGFSSRSVLTGDPYIGVDVIGLPSEVAKRI 355
Query: 121 TFEERVNLHNMCFLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDI 180
TFEE+V N+ LQ++VD+ LCL Y++G +TY++ GSKGHT LK GQ + RRI+DGD+
Sbjct: 356 TFEEQVTDINLNRLQEIVDKGLCLTYRDGQATYAITVGSKGHTTLKVGQTISRRIVDGDV 415
Query: 181 VFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEV 240
VF+NRPP+THKHSLQA VY+H+DHTVKINPLIC P ADFDGDCVH++YPQSLAAKAE
Sbjct: 416 VFLNRPPSTHKHSLQAFRVYVHEDHTVKINPLICAPFAADFDGDCVHIYYPQSLAAKAEA 475
Query: 241 VELFSVEKQLLSSHSGNLNLQLSTDSLLSLKMLVKKGFMDRAAANQLAMFLSLPLPRPAL 300
+ELFSVEKQL SSHSG +NLQL +DSLL+LK + + + + AANQLAM ++ LP PA+
Sbjct: 476 LELFSVEKQLTSSHSGKVNLQLVSDSLLALKHMSSRTMLSKEAANQLAMLVTCSLPDPAV 535
Query: 301 LKAGSGDSYWTSIQILQCALPLSFDCTGGRYLIRQSDILEFDLSRDVLPAVINEIAASVF 360
+K+ YWT QI+Q ALP + G ++++R S I++ DL ++ + +++ S
Sbjct: 536 IKS---KPYWTISQIVQGALPKALTSQGDKHVVRDSTIIKLDLDKESVQTSFSDLVYSTL 592
Query: 361 FGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLR 420
KGP EAL F +VLQP+LME I +GFSV L DF++ + +NI K S +L Q R
Sbjct: 593 SVKGPGEALQFLNVLQPLLMELILLDGFSVSLQDFNVPKVLLEEAQKNIEKQSLILEQSR 652
Query: 421 FIYNELVAQQLEKHM 435
F N++V +++ ++
Sbjct: 653 FAENQVVEMRVDNNL 667
>I1NXC6_ORYGL (tr|I1NXC6) DNA-directed RNA polymerase OS=Oryza glaberrima PE=3
SV=1
Length = 1630
Score = 473 bits (1216), Expect = e-131, Method: Compositional matrix adjust.
Identities = 227/435 (52%), Positives = 315/435 (72%), Gaps = 3/435 (0%)
Query: 1 MSSDPSMTFLRKLLRKVEIIRSSRSGEPNFESHEVEANDLQSVVDQYLQIRGCAKPARDI 60
MS D S++ L+K+L+K+E I+ SR+G PNFESHEVE+ DLQ + QY+ +RG + +D
Sbjct: 236 MSYDISISLLKKVLQKIEQIKKSRAGSPNFESHEVESCDLQLSIAQYIHLRGTTRGPQDN 295
Query: 61 ETHFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRI 120
F ++ + S S K WL+KM++LFISKGSGFSSRSV+TGD Y ++ +G+P E+A+RI
Sbjct: 296 TKRFAISTDPSALSTKQWLEKMRTLFISKGSGFSSRSVLTGDPYIGVDVIGLPSEVAKRI 355
Query: 121 TFEERVNLHNMCFLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDI 180
TFEE+V N+ LQ++VD+ LCL Y++G +TY++ GSKGHT LK GQ + RRI+DGD+
Sbjct: 356 TFEEQVTDINLNRLQEIVDKGLCLTYRDGQATYAITVGSKGHTTLKVGQTISRRIVDGDV 415
Query: 181 VFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEV 240
VF+NRPP+THKHSLQA VY+H+DHTVKINPLIC P ADFDGDCVH++YPQSLAAKAE
Sbjct: 416 VFLNRPPSTHKHSLQAFRVYVHEDHTVKINPLICAPFAADFDGDCVHIYYPQSLAAKAEA 475
Query: 241 VELFSVEKQLLSSHSGNLNLQLSTDSLLSLKMLVKKGFMDRAAANQLAMFLSLPLPRPAL 300
+ELFSVEKQL SSHSG +NLQL +DSLL+LK + + + + AANQLAM ++ LP PA+
Sbjct: 476 LELFSVEKQLTSSHSGKVNLQLVSDSLLALKHMSSRTMLSKEAANQLAMLVTCSLPDPAV 535
Query: 301 LKAGSGDSYWTSIQILQCALPLSFDCTGGRYLIRQSDILEFDLSRDVLPAVINEIAASVF 360
+K+ YWT QI+Q ALP + G ++++R S I++ DL ++ + +++ S
Sbjct: 536 IKS---KPYWTISQIVQGALPKALTSQGDKHVVRDSTIIKLDLDKESVQTSFSDLVYSTL 592
Query: 361 FGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLR 420
KGP EAL F +VLQP+LME I +GFSV L DF++ + +NI K S +L Q R
Sbjct: 593 SVKGPGEALQFLNVLQPLLMELILLDGFSVSLQDFNVPKVLLEEAQKNIEKQSLILEQSR 652
Query: 421 FIYNELVAQQLEKHM 435
F N++V +++ ++
Sbjct: 653 FAENQVVEMRVDNNL 667
>B9F2S6_ORYSJ (tr|B9F2S6) DNA-directed RNA polymerase OS=Oryza sativa subsp.
japonica GN=OsJ_05410 PE=2 SV=1
Length = 2017
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 227/435 (52%), Positives = 315/435 (72%), Gaps = 3/435 (0%)
Query: 1 MSSDPSMTFLRKLLRKVEIIRSSRSGEPNFESHEVEANDLQSVVDQYLQIRGCAKPARDI 60
MS D S++ L+K+L+K+E I+ SR+G PNFESHEVE+ DLQ + QY+ +RG + +D
Sbjct: 236 MSYDISISLLKKVLQKIEQIKKSRAGSPNFESHEVESCDLQLSIAQYIHLRGTTRGPQDN 295
Query: 61 ETHFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRI 120
F ++ + S S K WL+KM++LFISKGSGFSSRSV+TGD Y ++ +G+P E+A+RI
Sbjct: 296 TKRFAISTDPSALSTKQWLEKMRTLFISKGSGFSSRSVLTGDPYIGVDVIGLPSEVAKRI 355
Query: 121 TFEERVNLHNMCFLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDI 180
TFEE+V N+ LQ++VD+ LCL Y++G +TY++ GSKGHT LK GQ + RRI+DGD+
Sbjct: 356 TFEEQVTDINLNRLQEIVDKGLCLTYRDGQATYAITVGSKGHTTLKVGQTISRRIVDGDV 415
Query: 181 VFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEV 240
VF+NRPP+THKHSLQA VY+H+DHTVKINPLIC P ADFDGDCVH++YPQSLAAKAE
Sbjct: 416 VFLNRPPSTHKHSLQAFRVYVHEDHTVKINPLICAPFAADFDGDCVHIYYPQSLAAKAEA 475
Query: 241 VELFSVEKQLLSSHSGNLNLQLSTDSLLSLKMLVKKGFMDRAAANQLAMFLSLPLPRPAL 300
+ELFSVEKQL SSHSG +NLQL +DSLL+LK + + + + AANQLAM ++ LP PA+
Sbjct: 476 LELFSVEKQLTSSHSGKVNLQLVSDSLLALKHMSSRTMLSKEAANQLAMLVTCSLPDPAV 535
Query: 301 LKAGSGDSYWTSIQILQCALPLSFDCTGGRYLIRQSDILEFDLSRDVLPAVINEIAASVF 360
+K+ YWT QI+Q ALP + G ++++R S I++ DL ++ + +++ S
Sbjct: 536 IKS---KPYWTISQIVQGALPKALTSQGDKHVVRDSTIIKLDLDKESVQTSFSDLVYSTL 592
Query: 361 FGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLR 420
KGP EAL F +VLQP+LME I +GFSV L DF++ + +NI K S +L Q R
Sbjct: 593 SVKGPGEALQFLNVLQPLLMELILLDGFSVSLQDFNVPKVLLEEAQKNIEKQSLILEQSR 652
Query: 421 FIYNELVAQQLEKHM 435
F N++V +++ ++
Sbjct: 653 FAENQVVEMRVDNNL 667
>K3YP74_SETIT (tr|K3YP74) DNA-directed RNA polymerase OS=Setaria italica
GN=Si016066m.g PE=3 SV=1
Length = 2050
Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust.
Identities = 226/435 (51%), Positives = 309/435 (71%), Gaps = 3/435 (0%)
Query: 1 MSSDPSMTFLRKLLRKVEIIRSSRSGEPNFESHEVEANDLQSVVDQYLQIRGCAKPARDI 60
MS D S+ L+K+L+K+E I+ SRSG PNFESHE E+ D+Q V QY+ +RG + +D
Sbjct: 237 MSYDISIALLKKVLQKIEQIKRSRSGSPNFESHEEESCDIQLAVGQYIHLRGTTRGPQDN 296
Query: 61 ETHFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRI 120
F V + + S K WL+KM++LFISKGSGFSSRSV+TGD Y ++ +G+P E+A+RI
Sbjct: 297 SKRFAVGTDTAALSTKQWLEKMRTLFISKGSGFSSRSVLTGDPYIGVDVIGLPSEVAKRI 356
Query: 121 TFEERVNLHNMCFLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDI 180
TFEE+V N+ LQ++VD+ LCL Y++G TY++ GSKGHT LK GQ + RRI+DGD+
Sbjct: 357 TFEEQVTDININRLQEVVDKGLCLTYRDGKDTYAITVGSKGHTTLKVGQTISRRIVDGDV 416
Query: 181 VFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEV 240
VF+NRPP+THKHSLQA Y+HDDHTVKINPL+C P ADFDGDCVH++YPQSLAAKAE
Sbjct: 417 VFLNRPPSTHKHSLQAFYAYVHDDHTVKINPLMCSPFSADFDGDCVHIYYPQSLAAKAEA 476
Query: 241 VELFSVEKQLLSSHSGNLNLQLSTDSLLSLKMLVKKGFMDRAAANQLAMFLSLPLPRPAL 300
+ELFSVEKQL+SSHSG +NLQL DSL+++K + + + + ANQLAMF+ LP PA+
Sbjct: 477 LELFSVEKQLISSHSGQVNLQLGNDSLVAMKAMSSRTMLSKELANQLAMFVPFSLPAPAV 536
Query: 301 LKAGSGDSYWTSIQILQCALPLSFDCTGGRYLIRQSDILEFDLSRDVLPAVINEIAASVF 360
+K+ WT QI+Q ALP C G +L+R +I++ DL +D + N++ +SV
Sbjct: 537 IKSIPA---WTITQIVQGALPAKLTCQGKTHLVRDGNIIKLDLDKDHVQDSFNDLVSSVL 593
Query: 361 FGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLR 420
KGP EAL F +VLQP+LME + +GFSV L DF++ A+ +NI K S +L Q R
Sbjct: 594 SEKGPGEALQFLNVLQPLLMEFLLLDGFSVTLKDFNVPKAILEEVHKNIQKQSLILEQSR 653
Query: 421 FIYNELVAQQLEKHM 435
F +++ ++E ++
Sbjct: 654 FSKSQIAEMRVENNL 668
>M0WRB8_HORVD (tr|M0WRB8) DNA-directed RNA polymerase OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 925
Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust.
Identities = 229/435 (52%), Positives = 313/435 (71%), Gaps = 4/435 (0%)
Query: 1 MSSDPSMTFLRKLLRKVEIIRSSRSGEPNFESHEVEANDLQSVVDQYLQIRGCAKPARDI 60
MS D S++ L+K+L+K+E I+ SRSG PNFES++ E+ DLQ + QY+Q+RG K +D
Sbjct: 23 MSYDISISLLKKILQKIEQIKKSRSGSPNFESNDSESTDLQLSIGQYIQLRGTTKGPQDA 82
Query: 61 ETHFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRI 120
+ F V+ + S S K WL+KM++LFISKGSGFSSRSV+TGD Y + VG+P E+A+RI
Sbjct: 83 K-RFSVSTDSSHLSTKQWLEKMRTLFISKGSGFSSRSVLTGDPYIGADVVGLPSEVAKRI 141
Query: 121 TFEERVNLHNMCFLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDI 180
TFEE+V N+ LQ++VD+ LCL Y++G +TY++ GSKG+T LK GQ + RRI+DGD+
Sbjct: 142 TFEEQVTDTNLNRLQEVVDKGLCLTYRDGQTTYAITVGSKGYTTLKVGQTISRRIVDGDV 201
Query: 181 VFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEV 240
VF+NRPP+THKHSLQA VYIHDDHTVKINPLIC PL ADFDGDCVH++YPQSLAAKAE
Sbjct: 202 VFLNRPPSTHKHSLQAFTVYIHDDHTVKINPLICSPLAADFDGDCVHIYYPQSLAAKAEA 261
Query: 241 VELFSVEKQLLSSHSGNLNLQLSTDSLLSLKMLVKKGFMDRAAANQLAMFLSLPLPRPAL 300
+ELFSVEKQL +SH+G +NLQL+ DSLL+LK + + + + +ANQLAM LSL LP PA+
Sbjct: 262 LELFSVEKQLTNSHNGKVNLQLANDSLLALKHMSSRTMLSKESANQLAMLLSLSLPAPAV 321
Query: 301 LKAGSGDSYWTSIQILQCALPLSFDCTGGRYLIRQSDILEFDLSRDVLPAVINEIAASVF 360
+K+ WT QI+Q ALP C G R+L+R S +++ DL ++ + A +E+ +S+
Sbjct: 322 VKS---KPCWTITQIMQSALPAELTCEGDRFLVRDSTVIKLDLDKESIQASFSELVSSIL 378
Query: 361 FGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLR 420
KGP +AL F + LQP LME + +GFSV L DFS+ + I K S +L Q R
Sbjct: 379 AVKGPGDALKFLNALQPFLMEFLLLDGFSVSLQDFSVPKPLLEEAQECIKKQSLVLEQSR 438
Query: 421 FIYNELVAQQLEKHM 435
++ V +++ ++
Sbjct: 439 CSNSQSVEVRVDNNL 453
>M8BMS2_AEGTA (tr|M8BMS2) DNA-directed RNA polymerase II subunit RPB1-B
OS=Aegilops tauschii GN=F775_02057 PE=4 SV=1
Length = 2017
Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust.
Identities = 229/435 (52%), Positives = 314/435 (72%), Gaps = 4/435 (0%)
Query: 1 MSSDPSMTFLRKLLRKVEIIRSSRSGEPNFESHEVEANDLQSVVDQYLQIRGCAKPARDI 60
MS D S++ L+K+L+K+E I+ SRSG PNFESH+ E+ DLQ + QY+Q+RG K +D
Sbjct: 332 MSYDISISLLKKILQKIEQIKKSRSGSPNFESHDSESADLQLSIGQYIQLRGTTKGPQDA 391
Query: 61 ETHFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRI 120
+ F V+ + S S K WL+KMK+LFISKGSGFSSRSV+TGD Y + VG+P E+A+RI
Sbjct: 392 K-RFAVSTDSSHLSTKQWLEKMKTLFISKGSGFSSRSVLTGDPYIGADVVGLPSEVAKRI 450
Query: 121 TFEERVNLHNMCFLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDI 180
TFEE+V N+ LQ++VD+ LCL Y++G +TY++ GSKG+T LK GQ + RRI+DGD+
Sbjct: 451 TFEEQVTDININRLQEVVDKGLCLTYRDGQTTYAITVGSKGYTTLKVGQTISRRIVDGDV 510
Query: 181 VFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEV 240
VF+NRPP+THKHSLQA VYIHDDHTVKINPLIC PL ADFDGDCVH++YPQSLAAKAE
Sbjct: 511 VFLNRPPSTHKHSLQAFTVYIHDDHTVKINPLICSPLAADFDGDCVHIYYPQSLAAKAEA 570
Query: 241 VELFSVEKQLLSSHSGNLNLQLSTDSLLSLKMLVKKGFMDRAAANQLAMFLSLPLPRPAL 300
+ELFSVEKQL +SH+G +NLQL+ DSLL+LK + + + + +ANQLAM LSL LP PA+
Sbjct: 571 LELFSVEKQLTNSHNGKVNLQLANDSLLALKHMSSRTMLSKESANQLAMLLSLSLPPPAV 630
Query: 301 LKAGSGDSYWTSIQILQCALPLSFDCTGGRYLIRQSDILEFDLSRDVLPAVINEIAASVF 360
+K+ WT QI+Q ALP C G R+L+R S +++ D+ ++ + A +++ +S+
Sbjct: 631 VKS---KPCWTIAQIMQSALPAELTCEGDRFLVRDSTVIKLDIDKESVQASFSDLVSSIL 687
Query: 361 FGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLR 420
KGP +AL F + LQP+LME + +GFSV L DFS+ + I K S +L Q R
Sbjct: 688 AVKGPGDALKFLNALQPLLMEFLLLDGFSVSLQDFSVPKPLLEEAQECIKKQSLVLEQSR 747
Query: 421 FIYNELVAQQLEKHM 435
++ V +++ ++
Sbjct: 748 CSSSQSVETRVDNNL 762
>M0WRB9_HORVD (tr|M0WRB9) DNA-directed RNA polymerase OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 1139
Score = 467 bits (1201), Expect = e-129, Method: Compositional matrix adjust.
Identities = 229/435 (52%), Positives = 313/435 (71%), Gaps = 4/435 (0%)
Query: 1 MSSDPSMTFLRKLLRKVEIIRSSRSGEPNFESHEVEANDLQSVVDQYLQIRGCAKPARDI 60
MS D S++ L+K+L+K+E I+ SRSG PNFES++ E+ DLQ + QY+Q+RG K +D
Sbjct: 237 MSYDISISLLKKILQKIEQIKKSRSGSPNFESNDSESTDLQLSIGQYIQLRGTTKGPQDA 296
Query: 61 ETHFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRI 120
+ F V+ + S S K WL+KM++LFISKGSGFSSRSV+TGD Y + VG+P E+A+RI
Sbjct: 297 K-RFSVSTDSSHLSTKQWLEKMRTLFISKGSGFSSRSVLTGDPYIGADVVGLPSEVAKRI 355
Query: 121 TFEERVNLHNMCFLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDI 180
TFEE+V N+ LQ++VD+ LCL Y++G +TY++ GSKG+T LK GQ + RRI+DGD+
Sbjct: 356 TFEEQVTDTNLNRLQEVVDKGLCLTYRDGQTTYAITVGSKGYTTLKVGQTISRRIVDGDV 415
Query: 181 VFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEV 240
VF+NRPP+THKHSLQA VYIHDDHTVKINPLIC PL ADFDGDCVH++YPQSLAAKAE
Sbjct: 416 VFLNRPPSTHKHSLQAFTVYIHDDHTVKINPLICSPLAADFDGDCVHIYYPQSLAAKAEA 475
Query: 241 VELFSVEKQLLSSHSGNLNLQLSTDSLLSLKMLVKKGFMDRAAANQLAMFLSLPLPRPAL 300
+ELFSVEKQL +SH+G +NLQL+ DSLL+LK + + + + +ANQLAM LSL LP PA+
Sbjct: 476 LELFSVEKQLTNSHNGKVNLQLANDSLLALKHMSSRTMLSKESANQLAMLLSLSLPAPAV 535
Query: 301 LKAGSGDSYWTSIQILQCALPLSFDCTGGRYLIRQSDILEFDLSRDVLPAVINEIAASVF 360
+K+ WT QI+Q ALP C G R+L+R S +++ DL ++ + A +E+ +S+
Sbjct: 536 VKS---KPCWTITQIMQSALPAELTCEGDRFLVRDSTVIKLDLDKESIQASFSELVSSIL 592
Query: 361 FGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLR 420
KGP +AL F + LQP LME + +GFSV L DFS+ + I K S +L Q R
Sbjct: 593 AVKGPGDALKFLNALQPFLMEFLLLDGFSVSLQDFSVPKPLLEEAQECIKKQSLVLEQSR 652
Query: 421 FIYNELVAQQLEKHM 435
++ V +++ ++
Sbjct: 653 CSNSQSVEVRVDNNL 667
>I1IV91_BRADI (tr|I1IV91) DNA-directed RNA polymerase OS=Brachypodium distachyon
GN=BRADI4G45065 PE=3 SV=1
Length = 1954
Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust.
Identities = 224/435 (51%), Positives = 316/435 (72%), Gaps = 4/435 (0%)
Query: 1 MSSDPSMTFLRKLLRKVEIIRSSRSGEPNFESHEVEANDLQSVVDQYLQIRGCAKPARDI 60
MS D S++ L+K+L ++E I+ SR+G PNFESHE E++DLQ + QY+ +RG K +D
Sbjct: 236 MSYDISISLLKKILHRIEQIKKSRAGTPNFESHEAESSDLQISIAQYIHLRGTTKGPQDT 295
Query: 61 ETHFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRI 120
+ F ++ + S S K WL+KM++LFISKGSGFSSRSV+TGD Y ++ VG+P E+A+RI
Sbjct: 296 K-RFTISTDSSHLSTKQWLEKMRTLFISKGSGFSSRSVLTGDPYIGVDVVGLPSEVAKRI 354
Query: 121 TFEERVNLHNMCFLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDI 180
TFEE+V N+ LQ++VD+ LCL Y++G +TY++ GSKG+T LK GQ + RRI+DGD+
Sbjct: 355 TFEEQVTDINIKRLQEVVDKGLCLTYRDGQTTYAITVGSKGYTTLKVGQTISRRIVDGDV 414
Query: 181 VFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEV 240
VF+NRPP+THKHSLQA VYIHDDHTVKINPLIC PL ADFDGDCVH++YPQSLAAKAE
Sbjct: 415 VFLNRPPSTHKHSLQAFYVYIHDDHTVKINPLICSPLAADFDGDCVHIYYPQSLAAKAEA 474
Query: 241 VELFSVEKQLLSSHSGNLNLQLSTDSLLSLKMLVKKGFMDRAAANQLAMFLSLPLPRPAL 300
+ELFSVEKQL +SH+G +NLQLS DSLL+LK + + + + +ANQLAM LS LP PA+
Sbjct: 475 LELFSVEKQLTNSHNGKVNLQLSNDSLLALKHMSSRTVLSKESANQLAMLLSFSLPDPAV 534
Query: 301 LKAGSGDSYWTSIQILQCALPLSFDCTGGRYLIRQSDILEFDLSRDVLPAVINEIAASVF 360
+K WT QI+Q ALP + C GGR+L++ S +++ DL+++ + A +++ +S+
Sbjct: 535 VKL---KPCWTITQIIQGALPAALTCEGGRFLVKDSTVIKLDLAKESVQASFSDLVSSIL 591
Query: 361 FGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLR 420
KGP AL F + LQP+LME + +GFSV L DF++ + ++I + S +L Q R
Sbjct: 592 CVKGPGGALQFLNALQPLLMEYLLLDGFSVSLQDFNVPKVLLEEVHKSIQEQSLVLEQSR 651
Query: 421 FIYNELVAQQLEKHM 435
++ V +++ ++
Sbjct: 652 CSKSQFVEMRVDNNL 666
>J3L9M9_ORYBR (tr|J3L9M9) DNA-directed RNA polymerase OS=Oryza brachyantha
GN=OB02G13460 PE=3 SV=1
Length = 2034
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 227/435 (52%), Positives = 312/435 (71%), Gaps = 3/435 (0%)
Query: 1 MSSDPSMTFLRKLLRKVEIIRSSRSGEPNFESHEVEANDLQSVVDQYLQIRGCAKPARDI 60
MS D S++ L+K+L+K+E I+ SR+G PNFESHEVE++DLQ + QY+ +RG + +D
Sbjct: 277 MSYDISISLLKKVLQKIEQIKKSRAGSPNFESHEVESSDLQLSIAQYIHLRGTTRGPQDN 336
Query: 61 ETHFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRI 120
F ++ + S S K WL+KM++LFISKGSGFSSRSV+TGD Y ++ VG+P E+A+RI
Sbjct: 337 TKRFSISTDSSALSTKQWLEKMRTLFISKGSGFSSRSVLTGDPYIGVDMVGLPSEVAKRI 396
Query: 121 TFEERVNLHNMCFLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDI 180
TFEE+V N+ LQ++VD+ LCL Y++G +TY++ GSKGHT LK GQ + RRI+DGDI
Sbjct: 397 TFEEQVTNININKLQEIVDKGLCLTYRDGQATYAITVGSKGHTTLKVGQTISRRIVDGDI 456
Query: 181 VFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEV 240
VF+NRPP+THKHSLQA Y+H+DHTVKINPLIC P ADFDGDCVH++YPQSLAAKAE
Sbjct: 457 VFLNRPPSTHKHSLQAFRAYVHEDHTVKINPLICSPFAADFDGDCVHIYYPQSLAAKAEA 516
Query: 241 VELFSVEKQLLSSHSGNLNLQLSTDSLLSLKMLVKKGFMDRAAANQLAMFLSLPLPRPAL 300
+ELFSVEKQL SSHSG +NLQL+ DSLL+LK + + + + ANQLAM ++ LP+PAL
Sbjct: 517 LELFSVEKQLTSSHSGKVNLQLANDSLLALKHMSFRTILSKEVANQLAMNVTYSLPKPAL 576
Query: 301 LKAGSGDSYWTSIQILQCALPLSFDCTGGRYLIRQSDILEFDLSRDVLPAVINEIAASVF 360
+K+ +WT QI+Q ALP G ++L+R S I++ DL ++ + +++ S
Sbjct: 577 IKS---RPHWTIAQIVQGALPKDLTSQGDKHLVRDSTIIKLDLDKESVQTSFSDLLYSTL 633
Query: 361 FGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLR 420
KGP EAL F +VLQP+LME I +GFSV L DF++ + +NI K S +L Q R
Sbjct: 634 SVKGPGEALQFLNVLQPLLMELILLDGFSVSLQDFNVPKVHLQEAQKNIEKQSIILEQSR 693
Query: 421 FIYNELVAQQLEKHM 435
N+ V +++ ++
Sbjct: 694 CAENQFVEMRVDNNL 708
>C5XUR7_SORBI (tr|C5XUR7) DNA-directed RNA polymerase OS=Sorghum bicolor
GN=Sb04g003760 PE=3 SV=1
Length = 554
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 181/354 (51%), Positives = 251/354 (70%), Gaps = 3/354 (0%)
Query: 82 MKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDEN 141
M++LFISKGSGFSSRSV+TGD Y + VG+P E+A+R+TFEE+V N+ LQ++VD+
Sbjct: 1 MRTLFISKGSGFSSRSVLTGDPYIGLGVVGLPSEVAKRMTFEEQVTDININRLQEVVDKG 60
Query: 142 LCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALVVYI 201
LCL Y++G +TY++ GSKGHT LK GQ + RRI+DGD+VF+NRPP+THKHSLQA Y+
Sbjct: 61 LCLTYRDGQATYAITVGSKGHTTLKVGQTISRRIVDGDVVFLNRPPSTHKHSLQAFYAYV 120
Query: 202 HDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHSGNLNLQ 261
HDDHTVKINPL+CGP ADFDGDCVH++YPQSLAAKAE +ELFSVE+QL+SSHSG +NLQ
Sbjct: 121 HDDHTVKINPLMCGPFSADFDGDCVHIYYPQSLAAKAEALELFSVERQLISSHSGKVNLQ 180
Query: 262 LSTDSLLSLKMLVKKGFMDRAAANQLAMFLSLPLPRPALLKAGSGDSYWTSIQILQCALP 321
L D L+++K + + + + ANQLAMF+ L PA++K WT QI+Q ALP
Sbjct: 181 LGNDCLVAMKAMSDRTVLHKELANQLAMFVPFSLLAPAVMKPIPS---WTITQIVQGALP 237
Query: 322 LSFDCTGGRYLIRQSDILEFDLSRDVLPAVINEIAASVFFGKGPQEALNFFDVLQPVLME 381
C G +L+R S I++ DL ++ + ++ +S+ KGP+EAL F +VL+P+LME
Sbjct: 238 AKLTCQGDTHLVRDSTIIKLDLDKESVQDSFPDLVSSILREKGPREALQFLNVLEPLLME 297
Query: 382 SIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIYNELVAQQLEKHM 435
+ G S+ L DF++ A+ +NI S +L Q R ++ V ++E ++
Sbjct: 298 FLVLGGLSISLRDFNVPKALLEEAQKNIQNQSLVLEQSRCSTSQFVELRVENNL 351
>K7USA4_MAIZE (tr|K7USA4) DNA-directed RNA polymerase OS=Zea mays
GN=ZEAMMB73_731449 PE=3 SV=1
Length = 554
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 179/354 (50%), Positives = 250/354 (70%), Gaps = 3/354 (0%)
Query: 82 MKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDEN 141
M++LFISKGSGFSSRSV+TGD Y + VG+P E+A+R+TFEE+V N+ LQ +VD+
Sbjct: 1 MRTLFISKGSGFSSRSVLTGDPYIGLGVVGLPSEVAKRMTFEEQVTDININRLQDVVDKG 60
Query: 142 LCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALVVYI 201
LCL Y++G +TY++ GSKG+T LK GQ + RRI+DGD+VF+NRPP+THKHSLQA Y+
Sbjct: 61 LCLTYRDGQATYAITVGSKGYTTLKVGQTISRRIVDGDVVFLNRPPSTHKHSLQAFYAYV 120
Query: 202 HDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHSGNLNLQ 261
HDDHTVKINPL+CGP ADFDGDCVH++YPQSLAAKAE +ELFSVE+QL+SSHSG +NLQ
Sbjct: 121 HDDHTVKINPLMCGPFSADFDGDCVHIYYPQSLAAKAEALELFSVERQLISSHSGKVNLQ 180
Query: 262 LSTDSLLSLKMLVKKGFMDRAAANQLAMFLSLPLPRPALLKAGSGDSYWTSIQILQCALP 321
L DSL+++K + + + ANQLAMF+ L PA++K WT QI+Q A P
Sbjct: 181 LGNDSLVAMKAMSHTTMLHKELANQLAMFVPFSLLAPAVIKPVPS---WTISQIVQGAFP 237
Query: 322 LSFDCTGGRYLIRQSDILEFDLSRDVLPAVINEIAASVFFGKGPQEALNFFDVLQPVLME 381
+ C G +L+R S I+ DL ++ + ++ +S+ KGP+EAL F +VL+P+LME
Sbjct: 238 ANLTCQGDTHLVRDSTIIRLDLGKESVQDSFPDLVSSILREKGPKEALQFLNVLEPLLME 297
Query: 382 SIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIYNELVAQQLEKHM 435
+ +G S+ L DF++ A+ ++I S +L Q R ++ V ++E ++
Sbjct: 298 FLLLDGLSISLRDFNVPKALLEEAQKDIRNQSLILEQSRCSTSQFVEFRVENNL 351
>M8C0F8_AEGTA (tr|M8C0F8) DNA-directed RNA polymerase II subunit RPB1 OS=Aegilops
tauschii GN=F775_23577 PE=4 SV=1
Length = 1600
Score = 339 bits (870), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 187/408 (45%), Positives = 261/408 (63%), Gaps = 35/408 (8%)
Query: 2 SSDPSMTFLRKLLRKVEIIRSSRSGEPNFESHEVEANDLQSVVDQYLQIRGCAKPARDIE 61
S D S LRK++ V I +SR G P F+ HEVEA+DLQ + Y++ G A+ + I
Sbjct: 231 SPDASTNLLRKIVLNVHSINNSRVGPPTFKEHEVEADDLQVAIADYIKHAGTARGPQGIT 290
Query: 62 THFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRIT 121
S + K W KMKSL ISK S FS R VITGD Y +N VG+P E+A+R++
Sbjct: 291 FK-------SLPATKQWQQKMKSLCISKSSSFSCRGVITGDPYIPMNVVGVPDEVARRMS 343
Query: 122 FEERVNLHNMCFLQKLVDENLCLAYKEGVS-TYSLREG--SKGHTYLKPGQIVHRRIMDG 178
+ERV +N+ LQ ++D LCL +++ S T+SL G +K T LK G+ V+RRI+DG
Sbjct: 344 VQERVTDYNIAQLQGMMDRGLCLTHEDANSITHSLDVGKANKKRTILKVGETVNRRILDG 403
Query: 179 DIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKA 238
D VF+NRPP+T KHS+QA+ V +H DHT+KINPLICGPLGADFDGDCVH+F+P+S++A+A
Sbjct: 404 DAVFVNRPPSTDKHSVQAMYVRVHTDHTIKINPLICGPLGADFDGDCVHIFFPRSVSARA 463
Query: 239 EVVELFSVEKQLLSSHSGNLNLQLSTDSLLSLKMLVKKGFMDRAAANQL--AMFLSLPLP 296
E +ELF+VEKQL+SSH+ LN QL D LL+LK + + + R AN+L AMF + +P
Sbjct: 464 EAIELFTVEKQLVSSHNAKLNFQLKNDCLLALKKMSARKY-SRREANELLNAMFTAGLIP 522
Query: 297 RPALLKAGSGDSYWTSIQILQCALPLSFDCTGGRYLIRQSDILEFDLSRDVLPAVINEIA 356
+ L SG W+ QIL+ LP +++ I L RD++ I
Sbjct: 523 KKRL----SGRPEWSFAQILETVLP------------QENKI----LIRDLVAGTI--TI 560
Query: 357 ASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDFSISGAVKRV 404
+SV K P+EA+ F ++LQP+LMES+F++GFSV L DF++ + +
Sbjct: 561 SSVLSTKNPREAIEFLNLLQPLLMESLFTDGFSVSLRDFNVQNPIPQT 608
>G7LG88_MEDTR (tr|G7LG88) DNA-directed RNA polymerase OS=Medicago truncatula
GN=MTR_8g066100 PE=3 SV=1
Length = 606
Score = 335 bits (858), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 177/275 (64%), Positives = 204/275 (74%), Gaps = 24/275 (8%)
Query: 80 DKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVD 139
+KM++LFI KGSGFSSR+VITGDGYK+INEVGIPLE+AQRITFEERV++ N+ +LQKLVD
Sbjct: 45 EKMRTLFIRKGSGFSSRTVITGDGYKKINEVGIPLEVAQRITFEERVSILNIHYLQKLVD 104
Query: 140 ENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALVV 199
ENLCL YKEG+STYSLREGSKGHTYLKPGQIVH + G I+F + + +
Sbjct: 105 ENLCLTYKEGMSTYSLREGSKGHTYLKPGQIVHGGLWTG-ILFSSTDCQLPTSTPCKRLW 163
Query: 200 YIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHSGNLN 259
YI VKINPLICGPLGADFDGDCVHLFYPQSLAAKAEV+ELFSVEKQLLSS+S
Sbjct: 164 YISMTTRVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVLELFSVEKQLLSSYS---- 219
Query: 260 LQLSTDSLLSLKMLVKKGFMDRAAANQLAMFLSLPLPRPALLKAGSGDSYWTSIQILQCA 319
+DRAAANQ+AMFLSLPLP PALLKA +GDSYWTSIQILQCA
Sbjct: 220 ------------------VLDRAAANQMAMFLSLPLPMPALLKASTGDSYWTSIQILQCA 261
Query: 320 LPLSFDCTGGRYLIRQSDILEFDLSRDVLPAVINE 354
LP SF G + D + FD + L A+++E
Sbjct: 262 LPFSFLVYVGWKVYSWRDAV-FDAALGNLFALLSE 295
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/77 (75%), Positives = 69/77 (89%), Gaps = 1/77 (1%)
Query: 32 SHEVEANDLQSVVDQYLQIRGCAKPARDIETHFGVNKELS-DASNKAWLDKMKSLFISKG 90
+H VEANDLQSVVDQYLQIRG +K ARDIETH+G NK+L+ D+S AWL+KM++LFI KG
Sbjct: 328 NHGVEANDLQSVVDQYLQIRGISKSARDIETHYGFNKDLNDDSSTNAWLEKMRTLFIRKG 387
Query: 91 SGFSSRSVITGDGYKRI 107
SGFSSR+VITGDGYK+I
Sbjct: 388 SGFSSRNVITGDGYKKI 404
>Q0E3V3_ORYSJ (tr|Q0E3V3) DNA-directed RNA polymerase (Fragment) OS=Oryza sativa
subsp. japonica GN=Os02g0152800 PE=2 SV=1
Length = 488
Score = 333 bits (855), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 154/253 (60%), Positives = 201/253 (79%)
Query: 1 MSSDPSMTFLRKLLRKVEIIRSSRSGEPNFESHEVEANDLQSVVDQYLQIRGCAKPARDI 60
MS D S++ L+K+L+K+E I+ SR+G PNFESHEVE+ DLQ + QY+ +RG + +D
Sbjct: 236 MSYDISISLLKKVLQKIEQIKKSRAGSPNFESHEVESCDLQLSIAQYIHLRGTTRGPQDN 295
Query: 61 ETHFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRI 120
F ++ + S S K WL+KM++LFISKGSGFSSRSV+TGD Y ++ +G+P E+A+RI
Sbjct: 296 TKRFAISTDPSALSTKQWLEKMRTLFISKGSGFSSRSVLTGDPYIGVDVIGLPSEVAKRI 355
Query: 121 TFEERVNLHNMCFLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDI 180
TFEE+V N+ LQ++VD+ LCL Y++G +TY++ GSKGHT LK GQ + RRI+DGD+
Sbjct: 356 TFEEQVTDINLNRLQEIVDKGLCLTYRDGQATYAITVGSKGHTTLKVGQTISRRIVDGDV 415
Query: 181 VFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEV 240
VF+NRPP+THKHSLQA VY+H+DHTVKINPLIC P ADFDGDCVH++YPQSLAAKAE
Sbjct: 416 VFLNRPPSTHKHSLQAFRVYVHEDHTVKINPLICAPFAADFDGDCVHIYYPQSLAAKAEA 475
Query: 241 VELFSVEKQLLSS 253
+ELFSVEKQL SS
Sbjct: 476 LELFSVEKQLTSS 488
>J3L864_ORYBR (tr|J3L864) DNA-directed RNA polymerase OS=Oryza brachyantha
GN=OB01G54200 PE=3 SV=1
Length = 1576
Score = 328 bits (840), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 190/409 (46%), Positives = 263/409 (64%), Gaps = 41/409 (10%)
Query: 3 SDPSMTFLRKLLRKVEIIRSSRSGEPNFESHEVEANDLQSVVDQYLQIRGCAKPARDIET 62
S S LRK+LRK++ I SSR G N + ++V+A+DLQ V Y+ +RG K
Sbjct: 264 SGTSTNLLRKILRKIQQISSSRIGSSNIQVNQVDADDLQVAVANYINLRGTTK------- 316
Query: 63 HFGVNKELSDASNKA---WLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQR 119
++++ AS A W KMK+ FISK S FSSR VITGD Y +N VG+P EIA+R
Sbjct: 317 ----GQDVTFASQPASIRWQQKMKTFFISKSSSFSSRGVITGDPYIGLNVVGVPEEIAKR 372
Query: 120 ITFEERVNLHNMCFLQKLVDENLCLAYKEGVS-TYSLREGS----KGHTYLKPGQIVHRR 174
++ EERV HN+ LQ +++ LCL Y + S TYSL EG K + LK G+IV+RR
Sbjct: 373 MSVEERVTDHNIDQLQDMMNNGLCLTYIDANSITYSLDEGQDNQKKKYITLKVGEIVNRR 432
Query: 175 IMDGDIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSL 234
++DGD+VF+NRPP+T KHS++A V IH+DHT+KINPLICGPLGADFDGDCVH+FYP+SL
Sbjct: 433 VLDGDVVFLNRPPSTDKHSVEAFYVQIHNDHTMKINPLICGPLGADFDGDCVHIFYPRSL 492
Query: 235 AAKAEVVELFSVEKQLLSSHSGNLNLQLSTDSLLSLKMLVKKGFMDRAAANQL--AMFLS 292
+A+AEV ELF+V+KQL+SSH+G LN QL D L+LK++ K + +R ANQ+ AMF S
Sbjct: 493 SARAEVTELFTVDKQLVSSHNGKLNFQLKNDCSLALKIICDKEYSER-EANQITNAMFSS 551
Query: 293 LPLPRPALLKAGSGDSYWTSIQILQCALPLSFDCTGGRYLIRQSDILEFDLSRDVLPAVI 352
P+ L+ G WT +QIL+ I + L L R+ + ++
Sbjct: 552 GMFPQKPLM----GRPCWTFLQILE---------------ITDAITLADHLDRESVGSLA 592
Query: 353 NEIAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDFSISGAV 401
+S+ KGP+EA+ F ++LQP+LMES+ +GFS+ L DF++ +
Sbjct: 593 TGAISSIVSMKGPREAIEFLNLLQPLLMESLLIDGFSISLRDFTVPSPI 641
>K3Y4N1_SETIT (tr|K3Y4N1) DNA-directed RNA polymerase OS=Setaria italica
GN=Si009169m.g PE=3 SV=1
Length = 1546
Score = 319 bits (818), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 178/404 (44%), Positives = 255/404 (63%), Gaps = 33/404 (8%)
Query: 4 DPSMTFLRKLLRKVEIIRSSRSGEPNFESHEVEANDLQSVVDQYLQIRGCAKPARDIETH 63
D S L+K+LR +E I+SS PNFE+ EV +DLQ V Y+ + G AK + +
Sbjct: 248 DTSKGLLQKVLRIIEQIKSSSISHPNFEACEVGEDDLQVAVADYINMGGTAKGTQSVTFS 307
Query: 64 FGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFE 123
+ K W +MK+LFISK S F+ R+VITGD Y ++ VG+P E+A R++ E
Sbjct: 308 -------RQPAPKQWQQRMKALFISKSSSFTCRAVITGDPYIGLDVVGVPNEVASRMSVE 360
Query: 124 ERVNLHNMCFLQKLVDENLCLAYKE-GVSTYSL--REGSKGHTYLKPGQIVHRRIMDGDI 180
E V +N+ LQ ++D+ LCL Y + +TY L +G K HT L+ G+ V RR++DGD+
Sbjct: 361 EHVTDYNIARLQYMMDKGLCLTYTDVNSNTYDLSGEKGRKKHTMLRVGETVDRRVLDGDL 420
Query: 181 VFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEV 240
VF+NR P+T HS+QAL V +HDDHT+KINPLICGPLGADFDGDCVH+F+P+S++A+ E
Sbjct: 421 VFLNRSPSTDMHSVQALYVLLHDDHTIKINPLICGPLGADFDGDCVHIFFPRSVSARVEA 480
Query: 241 VELFSVEKQLLSSHSGNLNLQLSTDSLLSLKMLVKKGFMDRAAANQLAMFLSLPLPRPAL 300
ELF+VE QL++SH+ LN Q+ D LL+LK++ + + R ANQ+AMF S +P
Sbjct: 481 TELFTVENQLVNSHNAKLNFQIKEDYLLALKIMCDRRY-SREEANQIAMFSSGMIP---- 535
Query: 301 LKAGSGDSYWTSIQILQCALPLSFDCTGGRYLIRQSDILEFDLSRDVLPAVINEIAASVF 360
GD YWT QILQ T G + L +++ + A++ I +S
Sbjct: 536 ----PGDPYWTISQILQ---------TTGSLI-----TLPSHPNKESVGALVTAIISSTL 577
Query: 361 FGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDFSISGAVKRV 404
GKGP+EA+ ++LQP+LMES+ +GFS+ L DF+ A+++V
Sbjct: 578 KGKGPREAIKLLNLLQPLLMESLLMDGFSMSLRDFNGPSAMQKV 621
>B8A9M1_ORYSI (tr|B8A9M1) DNA-directed RNA polymerase OS=Oryza sativa subsp.
indica GN=OsI_05331 PE=3 SV=1
Length = 1465
Score = 310 bits (794), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 185/413 (44%), Positives = 252/413 (61%), Gaps = 32/413 (7%)
Query: 3 SDPSMTFLRKLLRKVEIIRSSRSGEPNFESHEVEANDLQSVVDQYLQIRGCAKPARDIET 62
S S LRK LRK++ IR SR G N + +V A+DLQ V Y+ + G K
Sbjct: 229 SGTSTNLLRKALRKIQQIRGSRIGSSNIQVDQV-ADDLQVDVANYINLGGTTK------- 280
Query: 63 HFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITF 122
G + S + W KMK+LFISK S FSSR VITGD Y +N VG+P E+A+R++
Sbjct: 281 GHGDDTFTSQPTAMQWKQKMKTLFISKSSSFSSRGVITGDPYIGLNVVGVPEEVAKRMSV 340
Query: 123 EERVNLHNMCFLQKLVDENLCLAYKEGVS-TYSLREG----SKGHTYLKPGQIVHRRIMD 177
EE+V HN+ LQ ++++ LCL Y + S TYSL G +K HT LK G+IV+RR+ D
Sbjct: 341 EEKVTDHNIAQLQDMMNKGLCLTYTDANSITYSLDAGKDNPNKKHTILKVGEIVNRRVFD 400
Query: 178 GDIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAK 237
GDIVF+NRPP+T KHS++A V +H+DHT+KINPLIC PLGADFD DCV +FYP+SL+A+
Sbjct: 401 GDIVFLNRPPSTDKHSVEAFYVQVHNDHTIKINPLICDPLGADFDDDCVQIFYPRSLSAR 460
Query: 238 AEVVELFSVEKQLLSSHSGNLNLQLSTDSLLSLKMLVKKGFMDRAAANQL--AMFLSLPL 295
AE EL++V+KQL+SSH+G LN Q D L+LK++ + + +R ANQ+ AMF S
Sbjct: 461 AEAKELYTVDKQLVSSHNGKLNFQFKNDFSLALKIMCGREYSER-EANQITNAMFSSGMY 519
Query: 296 PRPALLKAGSGDSYWTSIQILQCALPLSFDCTGGRYLIRQSDILEFDLSRDVLPAVINEI 355
P+ L+ G YWT QIL+ S T +L R+S V
Sbjct: 520 PQKPLI----GGPYWTFPQILETT--KSNAITLADHLDRES----------VGALATGTT 563
Query: 356 AASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDFSISGAVKRVTDRN 408
+S+ KGP+EA F ++LQP+LMES+ +GFS+ L DF++ + N
Sbjct: 564 ISSILSTKGPREATEFLNLLQPLLMESLLIDGFSINLGDFTVPSPILEAIQNN 616
>Q5JJW0_ORYSJ (tr|Q5JJW0) DNA-directed RNA polymerase OS=Oryza sativa subsp.
japonica GN=P0458E05.13 PE=3 SV=1
Length = 1568
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 185/413 (44%), Positives = 252/413 (61%), Gaps = 32/413 (7%)
Query: 3 SDPSMTFLRKLLRKVEIIRSSRSGEPNFESHEVEANDLQSVVDQYLQIRGCAKPARDIET 62
S S LRK LRK++ IR SR G N + +V A+DLQ V Y+ + G K
Sbjct: 230 SGTSTNLLRKALRKIQQIRGSRIGSSNIQVDQV-ADDLQVDVANYINLGGTTK------- 281
Query: 63 HFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITF 122
G + S + W KMK+LFISK S FSSR VITGD Y +N VG+P E+A+R++
Sbjct: 282 GHGDDTFTSQPTAMQWKQKMKTLFISKSSSFSSRGVITGDPYIGLNVVGVPEEVAKRMSV 341
Query: 123 EERVNLHNMCFLQKLVDENLCLAYKEGVS-TYSLREG----SKGHTYLKPGQIVHRRIMD 177
EE+V HN+ LQ ++++ LCL Y + S TYSL G +K HT LK G+IV+RR+ D
Sbjct: 342 EEKVTDHNIAQLQDMMNKGLCLTYTDANSITYSLDAGKDNPNKKHTILKVGEIVNRRVFD 401
Query: 178 GDIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAK 237
GDIVF+NRPP+T KHS++A V +H+DHT+KINPLIC PLGADFDGDCV +FYP+SL+A+
Sbjct: 402 GDIVFLNRPPSTDKHSVEAFYVQVHNDHTIKINPLICDPLGADFDGDCVQIFYPRSLSAR 461
Query: 238 AEVVELFSVEKQLLSSHSGNLNLQLSTDSLLSLKMLVKKGFMDRAAANQL--AMFLSLPL 295
AE EL++V+KQL+SSH+G LN Q D L+LK++ + + +R ANQ+ AMF S
Sbjct: 462 AEAKELYTVDKQLVSSHNGKLNFQFKNDFSLALKIMCGREYSER-EANQITNAMFSSGMY 520
Query: 296 PRPALLKAGSGDSYWTSIQILQCALPLSFDCTGGRYLIRQSDILEFDLSRDVLPAVINEI 355
P+ L+ G YWT QIL+ S T +L R+S V
Sbjct: 521 PQKPLI----GGPYWTFPQILETT--KSNAITLADHLDRES----------VGALATGTT 564
Query: 356 AASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDFSISGAVKRVTDRN 408
+S+ KGP+EA F ++LQP+LMES+ + FS+ L DF++ + N
Sbjct: 565 ISSILSTKGPREATEFLNLLQPLLMESLLIDCFSINLGDFTVPSPILEAIQNN 617
>B9EWM0_ORYSJ (tr|B9EWM0) DNA-directed RNA polymerase OS=Oryza sativa subsp.
japonica GN=OsJ_04874 PE=3 SV=1
Length = 1528
Score = 309 bits (792), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 185/413 (44%), Positives = 252/413 (61%), Gaps = 32/413 (7%)
Query: 3 SDPSMTFLRKLLRKVEIIRSSRSGEPNFESHEVEANDLQSVVDQYLQIRGCAKPARDIET 62
S S LRK LRK++ IR SR G N + +V A+DLQ V Y+ + G K
Sbjct: 230 SGTSTNLLRKALRKIQQIRGSRIGSSNIQVDQV-ADDLQVDVANYINLGGTTK------- 281
Query: 63 HFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITF 122
G + S + W KMK+LFISK S FSSR VITGD Y +N VG+P E+A+R++
Sbjct: 282 GHGDDTFTSQPTAMQWKQKMKTLFISKSSSFSSRGVITGDPYIGLNVVGVPEEVAKRMSV 341
Query: 123 EERVNLHNMCFLQKLVDENLCLAYKEGVS-TYSLREG----SKGHTYLKPGQIVHRRIMD 177
EE+V HN+ LQ ++++ LCL Y + S TYSL G +K HT LK G+IV+RR+ D
Sbjct: 342 EEKVTDHNIAQLQDMMNKGLCLTYTDANSITYSLDAGKDNPNKKHTILKVGEIVNRRVFD 401
Query: 178 GDIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAK 237
GDIVF+NRPP+T KHS++A V +H+DHT+KINPLIC PLGADFDGDCV +FYP+SL+A+
Sbjct: 402 GDIVFLNRPPSTDKHSVEAFYVQVHNDHTIKINPLICDPLGADFDGDCVQIFYPRSLSAR 461
Query: 238 AEVVELFSVEKQLLSSHSGNLNLQLSTDSLLSLKMLVKKGFMDRAAANQL--AMFLSLPL 295
AE EL++V+KQL+SSH+G LN Q D L+LK++ + + +R ANQ+ AMF S
Sbjct: 462 AEAKELYTVDKQLVSSHNGKLNFQFKNDFSLALKIMCGREYSER-EANQITNAMFSSGMY 520
Query: 296 PRPALLKAGSGDSYWTSIQILQCALPLSFDCTGGRYLIRQSDILEFDLSRDVLPAVINEI 355
P+ L+ G YWT QIL+ S T +L R+S V
Sbjct: 521 PQKPLI----GGPYWTFPQILETT--KSNAITLADHLDRES----------VGALATGTT 564
Query: 356 AASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDFSISGAVKRVTDRN 408
+S+ KGP+EA F ++LQP+LMES+ + FS+ L DF++ + N
Sbjct: 565 ISSILSTKGPREATEFLNLLQPLLMESLLIDCFSINLGDFTVPSPILEAIQNN 617
>C5XJ93_SORBI (tr|C5XJ93) DNA-directed RNA polymerase (Fragment) OS=Sorghum
bicolor GN=Sb03g046922 PE=3 SV=1
Length = 1571
Score = 305 bits (781), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 167/410 (40%), Positives = 247/410 (60%), Gaps = 36/410 (8%)
Query: 1 MSSDPSMTFLRKLLRKVEIIRSSRSGEPNFESHEVEANDLQSVVDQYLQIRGCAKPARDI 60
M S L K+LR +E I S PN E+ E+ A+DLQ V Y+ + G AK +
Sbjct: 243 MCPPTSKGLLHKVLRTIEQIESLNISHPNIEARELGADDLQVAVADYMNMGGAAK----V 298
Query: 61 ETHFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRI 120
H ++ + K W KMK+LF+SK S ++ R+VITGD Y ++ VG+P EIA+R+
Sbjct: 299 SQHVTFTRQ---PAPKQWHKKMKTLFLSKSSSYTCRAVITGDPYIGLDVVGVPDEIARRM 355
Query: 121 TFEERVNLHNMCFLQKLVDENLCLAYKE-GVSTYSL--REGSKGHTYLKPGQIVHRRIMD 177
+ +E V +N+ LQ ++++ LCL Y + +TY L ++G+K L+ G+ V RR++D
Sbjct: 356 SVQECVTNYNIARLQDMMNKGLCLTYTDLNTNTYDLDGKKGNKKCIMLRVGETVDRRVLD 415
Query: 178 GDIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAK 237
GD+VF+N+PP+T HS+QAL V++HDDHT+KINPLICGPL ADFDGDCVH+F+P+S+ A+
Sbjct: 416 GDLVFLNKPPSTDMHSIQALYVHVHDDHTIKINPLICGPLEADFDGDCVHIFFPRSVLAR 475
Query: 238 AEVVELFSVEKQLLSSHSGNLNLQLSTDSLLSLKMLVKKGFMDRAAANQLAMFLS--LPL 295
E ELF+VEKQLL+SH+ LN Q+ D LL+L+++ + + + ANQ+AMF S +P
Sbjct: 476 VEAAELFAVEKQLLNSHNAKLNFQIKNDYLLALRIMCDRSY-SKEKANQIAMFSSGMIPP 534
Query: 296 PRPALLKAGSGDSYWTSIQILQCALPLSFDCTGGRYLIRQSDILEFDLSR-DVLPAVINE 354
P + WT QILQ +D L S + + A +
Sbjct: 535 CNPWTIC-----DRWTIPQILQ-----------------TTDALRIVPSHPNTVGASVTA 572
Query: 355 IAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDFSISGAVKRV 404
I S KGP+EA+ ++LQP+LMES+ +GFS+ L D A+++
Sbjct: 573 IITSTLSEKGPREAIKLINLLQPLLMESLLMDGFSISLKDLDGQSAMQKA 622
>M0XPZ5_HORVD (tr|M0XPZ5) DNA-directed RNA polymerase OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 1281
Score = 265 bits (677), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 142/304 (46%), Positives = 200/304 (65%), Gaps = 28/304 (9%)
Query: 107 INEVGIPLEIAQRITFEERVNLHNMCFLQKLVDENLCLAYKEGVS-TYSLREG--SKGHT 163
+N VG+P E+A+R++ +E V +N+ LQ ++D LCL +K+ S T+SL G +K T
Sbjct: 1 MNVVGVPDEVARRMSVQEHVTDYNIAQLQDMMDRGLCLTHKDANSITHSLDVGKENKKRT 60
Query: 164 YLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDG 223
LK G+ V+RRI+DGD+VFINRPP+T KHS+QA+ V +H DHT+KINPLICGPLGADFDG
Sbjct: 61 ILKVGETVNRRILDGDVVFINRPPSTDKHSVQAMYVRVHTDHTIKINPLICGPLGADFDG 120
Query: 224 DCVHLFYPQSLAAKAEVVELFSVEKQLLSSHSGNLNLQLSTDSLLSLKMLVKKGFMDRAA 283
DCVH+F+P+S++A+AE +ELF VEKQL+SSH+ LN +L D LL+LK + + + R
Sbjct: 121 DCVHIFFPRSVSARAEAMELFMVEKQLVSSHNEKLNFRLKNDCLLALKKISGRKY-SRRE 179
Query: 284 ANQL--AMFLSLPLPRPALLKAGSGDSYWTSIQILQCALPLSFDCTGGRYLIRQSDILEF 341
ANQL AMF +P+ L SG W+ QIL+ LP ++ IL
Sbjct: 180 ANQLMNAMFTGGLIPKKRL----SGGPEWSFAQILETVLP------------EENKILIR 223
Query: 342 DLSRDVLPAVINEIAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDFSISGAV 401
DL+ + +SV K P+EA+ F ++LQP+LMES+F++GFSV L DF+ +
Sbjct: 224 DLAAGTV------TISSVLSTKNPKEAIEFLNLLQPLLMESLFTDGFSVSLRDFNFHNPI 277
Query: 402 KRVT 405
+ T
Sbjct: 278 PQTT 281
>M0XQ02_HORVD (tr|M0XQ02) DNA-directed RNA polymerase OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 417
Score = 264 bits (674), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 142/304 (46%), Positives = 200/304 (65%), Gaps = 28/304 (9%)
Query: 107 INEVGIPLEIAQRITFEERVNLHNMCFLQKLVDENLCLAYKEGVS-TYSLREG--SKGHT 163
+N VG+P E+A+R++ +E V +N+ LQ ++D LCL +K+ S T+SL G +K T
Sbjct: 1 MNVVGVPDEVARRMSVQEHVTDYNIAQLQDMMDRGLCLTHKDANSITHSLDVGKENKKRT 60
Query: 164 YLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDG 223
LK G+ V+RRI+DGD+VFINRPP+T KHS+QA+ V +H DHT+KINPLICGPLGADFDG
Sbjct: 61 ILKVGETVNRRILDGDVVFINRPPSTDKHSVQAMYVRVHTDHTIKINPLICGPLGADFDG 120
Query: 224 DCVHLFYPQSLAAKAEVVELFSVEKQLLSSHSGNLNLQLSTDSLLSLKMLVKKGFMDRAA 283
DCVH+F+P+S++A+AE +ELF VEKQL+SSH+ LN +L D LL+LK + + + R
Sbjct: 121 DCVHIFFPRSVSARAEAMELFMVEKQLVSSHNEKLNFRLKNDCLLALKKISGRKY-SRRE 179
Query: 284 ANQL--AMFLSLPLPRPALLKAGSGDSYWTSIQILQCALPLSFDCTGGRYLIRQSDILEF 341
ANQL AMF +P+ L SG W+ QIL+ LP ++ IL
Sbjct: 180 ANQLMNAMFTGGLIPKKRL----SGGPEWSFAQILETVLP------------EENKILIR 223
Query: 342 DLSRDVLPAVINEIAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDFSISGAV 401
DL+ + +SV K P+EA+ F ++LQP+LMES+F++GFSV L DF+ +
Sbjct: 224 DLAAGTV------TISSVLSTKNPKEAIEFLNLLQPLLMESLFTDGFSVSLRDFNFHNPI 277
Query: 402 KRVT 405
+ T
Sbjct: 278 PQTT 281
>M0XPZ2_HORVD (tr|M0XPZ2) DNA-directed RNA polymerase OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 511
Score = 263 bits (673), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 142/304 (46%), Positives = 200/304 (65%), Gaps = 28/304 (9%)
Query: 107 INEVGIPLEIAQRITFEERVNLHNMCFLQKLVDENLCLAYKEGVS-TYSLREG--SKGHT 163
+N VG+P E+A+R++ +E V +N+ LQ ++D LCL +K+ S T+SL G +K T
Sbjct: 1 MNVVGVPDEVARRMSVQEHVTDYNIAQLQDMMDRGLCLTHKDANSITHSLDVGKENKKRT 60
Query: 164 YLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDG 223
LK G+ V+RRI+DGD+VFINRPP+T KHS+QA+ V +H DHT+KINPLICGPLGADFDG
Sbjct: 61 ILKVGETVNRRILDGDVVFINRPPSTDKHSVQAMYVRVHTDHTIKINPLICGPLGADFDG 120
Query: 224 DCVHLFYPQSLAAKAEVVELFSVEKQLLSSHSGNLNLQLSTDSLLSLKMLVKKGFMDRAA 283
DCVH+F+P+S++A+AE +ELF VEKQL+SSH+ LN +L D LL+LK + + + R
Sbjct: 121 DCVHIFFPRSVSARAEAMELFMVEKQLVSSHNEKLNFRLKNDCLLALKKISGRKY-SRRE 179
Query: 284 ANQL--AMFLSLPLPRPALLKAGSGDSYWTSIQILQCALPLSFDCTGGRYLIRQSDILEF 341
ANQL AMF +P+ L SG W+ QIL+ LP ++ IL
Sbjct: 180 ANQLMNAMFTGGLIPKKRL----SGGPEWSFAQILETVLP------------EENKILIR 223
Query: 342 DLSRDVLPAVINEIAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDFSISGAV 401
DL+ + +SV K P+EA+ F ++LQP+LMES+F++GFSV L DF+ +
Sbjct: 224 DLAAGTV------TISSVLSTKNPKEAIEFLNLLQPLLMESLFTDGFSVSLRDFNFHNPI 277
Query: 402 KRVT 405
+ T
Sbjct: 278 PQTT 281
>R7WAM9_AEGTA (tr|R7WAM9) DNA-directed RNA polymerase subunit A OS=Aegilops
tauschii GN=F775_23143 PE=4 SV=1
Length = 887
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 148/387 (38%), Positives = 214/387 (55%), Gaps = 65/387 (16%)
Query: 20 IRSSRSGEPNFESHEVEANDLQSVVDQYLQIRGCAKPARDIETHFGVNKELSDASNKAWL 79
I SR G P F+ HE EA+DLQ + Y+++ G A+ +D+ S + K W
Sbjct: 4 INGSRVGPPTFKEHEAEADDLQVAIADYIKLAGTARGPQDVTF-------TSQPATKQWQ 56
Query: 80 DKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVD 139
KMKSL ISK S FS R VITGD Y +N VG+P E+A+R++ + RV +N+ LQ ++D
Sbjct: 57 QKMKSLCISKRSSFSCRGVITGDPYIPMNVVGVPDEVARRMSVQVRVTEYNIAQLQGMMD 116
Query: 140 ENLCLAYKEGVS-TYSLREGS--KGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQA 196
LCL +++ S T+SL G K LK G+ V+RRI+DGD VFINRPP+T KHS+Q
Sbjct: 117 RGLCLTHEDANSVTHSLDVGKAKKKRIMLKVGETVNRRILDGDTVFINRPPSTDKHSVQG 176
Query: 197 LVVYIHDDHTVKINPLICGPLGADFDGDCVHLF-YPQSLAAKAEVVELFSVEKQLLSSHS 255
+ +H DHT+KINPLICGPLGADFDGDCVH++ P++
Sbjct: 177 MYARVHSDHTIKINPLICGPLGADFDGDCVHIYILPKN---------------------- 214
Query: 256 GNLNLQLSTDSLLSLKMLVKKGFMDRAAANQL-AMFLSLPLPRPALLKAGSGDSYWTSIQ 314
D L+LK + + + R A + AMF +P+ L SG W+ Q
Sbjct: 215 ---------DCSLALKRMSGREYSRREAYQLINAMFTGGLIPKKQL----SGGPKWSFAQ 261
Query: 315 ILQCALPLSFDCTGGRYLIRQSDILEFDLSRDVLPAVINEIAASVFFGKGPQEALNFFDV 374
IL+ LP ++ + L RD++ + +SV P+EA+ F ++
Sbjct: 262 ILETLLP------------EENGM----LVRDLVTGTVT--ISSVLSTMSPKEAVEFLNL 303
Query: 375 LQPVLMESIFSNGFSVGLHDFSISGAV 401
LQP+LMES+ ++GFS+ L DF++ ++
Sbjct: 304 LQPLLMESLSTDGFSINLRDFTVENSI 330
>Q1L5X7_SOLLC (tr|Q1L5X7) DNA-directed RNA polymerase (Fragment) OS=Solanum
lycopersicum GN=RPE1 PE=2 SV=1
Length = 1127
Score = 227 bits (579), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 112/216 (51%), Positives = 150/216 (69%)
Query: 220 DFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHSGNLNLQLSTDSLLSLKMLVKKGFM 279
DFDGDCVHLFYPQSL+AKAEV+ELF+V KQLLSSH+GN N QL+TDSLLSLK++ F
Sbjct: 1 DFDGDCVHLFYPQSLSAKAEVLELFAVGKQLLSSHTGNFNSQLATDSLLSLKLMFSHYFF 60
Query: 280 DRAAANQLAMFLSLPLPRPALLKAGSGDSYWTSIQILQCALPLSFDCTGGRYLIRQSDIL 339
D+AAA QLAMFL + LP A++ + WT++QIL ALP FD G + I +S L
Sbjct: 61 DKAAAQQLAMFLPMALPDSAVVDVRKSGAMWTTLQILGAALPDGFDSCGETHTIGKSQFL 120
Query: 340 EFDLSRDVLPAVINEIAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDFSISG 399
D RD++ +++N++ S++F KGP + L FF+ LQP+LME++ + GFS+ L DF ++
Sbjct: 121 GIDYHRDLISSILNDVITSIYFMKGPNDVLKFFNSLQPLLMENLCTEGFSISLRDFYMTK 180
Query: 400 AVKRVTDRNIGKVSPLLYQLRFIYNELVAQQLEKHM 435
AV+ I +S LL+ LR YNE V QLE H+
Sbjct: 181 AVRDGIQERIQCMSKLLHHLRSSYNESVEVQLEHHL 216
>A9SIR4_PHYPA (tr|A9SIR4) DNA-directed RNA polymerase OS=Physcomitrella patens
subsp. patens GN=NRPDA1502 PE=3 SV=1
Length = 1795
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 136/406 (33%), Positives = 221/406 (54%), Gaps = 20/406 (4%)
Query: 10 LRKLLRKVEIIRSSRSGEPNFESHEVEANDLQSVVDQYLQIRGCAK--PARDI---ETHF 64
L+KL+ ++ IR +R+G+ + E+ LQ + +YL+ +G K P ++ + +
Sbjct: 480 LQKLVAEIVHIRKTRAGKATNRTQRDESTKLQILTAEYLREKGAPKAVPGKEPLKRDRNG 539
Query: 65 GVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEE 124
V K+ K WL + + K F++++V+ GD + I ++GIP IAQ++T E
Sbjct: 540 RVTKQDYHRWTKEWLSQN---VLGKSGNFTAKAVLAGDPFLGIEQIGIPWLIAQKLTLPE 596
Query: 125 RVNLHNMCFLQKLVD---------ENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRI 175
R + N LQ+ V+ EN A + + + SK ++ G IVHR I
Sbjct: 597 RASQWNHTKLQEYVNVSQKLQQESENTAHATRVERNEVVYQVLSKTSLKVQIGDIVHRHI 656
Query: 176 MDGDIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLA 235
DGD V++NRPP+ H+HSL AL V+IH T+ +NPLIC P ADFDGD H+F PQSL
Sbjct: 657 QDGDYVYVNRPPSVHRHSLVALKVHIHHQPTITVNPLICPPFSADFDGDIFHIFAPQSLQ 716
Query: 236 AKAEVVELFSVEKQLLSSHSGNLNLQLSTDSLLSLKMLV-KKGFMDRAAANQLAMFLSLP 294
A AE+ +L +V++Q++S H G L+L+ D+LL+ +L KK F+D+A +QL ++ S
Sbjct: 717 AIAELDQLMAVKQQVISEHGGQPLLELTQDTLLAAHLLTSKKLFLDKATMDQLCLWASKK 776
Query: 295 LPRPALLKAGSGDSYWTSIQILQCALPLSFDCTGGR--YLIRQSDILEFDLSRDVLPAVI 352
P A+LK+ G +WT Q+ LP F+ + I+ +I+ + +L
Sbjct: 777 PPEAAILKSPKGGPFWTGEQVFALTLPEDFELGAPQEEVFIQGGEIIRWRNGTKLLRKGN 836
Query: 353 NEIAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDFSIS 398
+ +AA++ GP +++ + VL + GFS GL DF ++
Sbjct: 837 DSVAAALCVQLGPVALVDYLNTATGVLHTWLQVQGFSTGLTDFQVT 882
>M8ASR8_AEGTA (tr|M8ASR8) DNA-directed RNA polymerase II subunit RPB1 OS=Aegilops
tauschii GN=F775_23122 PE=4 SV=1
Length = 817
Score = 214 bits (544), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 114/244 (46%), Positives = 157/244 (64%), Gaps = 10/244 (4%)
Query: 181 VFINR-PPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAE 239
+FI++ P+THKHSLQAL V IH HTVKINPL+C P GADFDGDCV +FYPQS +AK E
Sbjct: 251 LFISKVSPSTHKHSLQALNVCIHHGHTVKINPLLCYPYGADFDGDCVQIFYPQSQSAKIE 310
Query: 240 VVELFSVEKQLLSSHSGNLNLQLSTDSLLSLKMLVKKGFMDRAAANQLAMFLSLPLPRPA 299
+ELFSVEKQL SSHSG LNLQL+ DSLL+LK++ + + + +ANQLAM LSL L PA
Sbjct: 311 ALELFSVEKQLSSSHSGRLNLQLTNDSLLALKLMSSRTMLSKESANQLAMLLSLSLNAPA 370
Query: 300 LLKAGSGDSYWTSIQILQCALPLSFDCTGGRYLIRQSDILEFDLSRDVLPAVINEIAASV 359
+++ T +I+Q ALP C G S +++ DL ++ + A +++ +S+
Sbjct: 371 VIQP---KPCCTITKIIQSALPAELTCEG------DSTVIKLDLEKESVQASFSDLVSSI 421
Query: 360 FFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQL 419
KGP +AL F + LQP+ ME + +GFS+ L DFS+ + I + S + Q
Sbjct: 422 ICVKGPGDALKFLNALQPLFMEFLLLDGFSLTLQDFSVPKLLLEGAQECIKEQSSVFEQS 481
Query: 420 RFIY 423
R +
Sbjct: 482 RRCF 485
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 55/86 (63%), Gaps = 1/86 (1%)
Query: 6 SMTFLRKLLRKVEIIRSSRSGEPNFESHEVEANDLQSVVDQYLQIRGCAKPARDIETHFG 65
S++ K+L K+E + S SG PNFES++ E+ +LQ + QY+Q RG K + + F
Sbjct: 173 SISLFGKILEKIEKTKESASGSPNFESYDTESTELQFSIGQYIQARGTTKVPQGAK-RFA 231
Query: 66 VNKELSDASNKAWLDKMKSLFISKGS 91
+ + S +S K WL+KMK+LFISK S
Sbjct: 232 ASTDSSHSSTKEWLEKMKTLFISKVS 257
>I1NVI7_ORYGL (tr|I1NVI7) DNA-directed RNA polymerase OS=Oryza glaberrima PE=3
SV=1
Length = 1567
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 117/232 (50%), Positives = 152/232 (65%), Gaps = 13/232 (5%)
Query: 3 SDPSMTFLRKLLRKVEIIRSSRSGEPNFESHEVEANDLQSVVDQYLQIRGCAKPARDIET 62
S S LRK LRK++ IR SR G N + +V A+DLQ V Y+ + G K
Sbjct: 246 SGTSTNLLRKALRKIQQIRGSRIGSSNIQVDQV-ADDLQVDVANYINLGGTTK------- 297
Query: 63 HFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITF 122
G + S + W KMK+LFISK S FSSR VITGD Y +N VG+P E+A+R++
Sbjct: 298 GHGDDTFTSQPTAMQWKQKMKTLFISKSSSFSSRGVITGDPYIGLNVVGVPEEVAKRMSV 357
Query: 123 EERVNLHNMCFLQKLVDENLCLAYKEGVS-TYSLREG----SKGHTYLKPGQIVHRRIMD 177
EE+V HN+ LQ ++++ LCL Y + S TYSL G +K HT LK G+IV+RR+ D
Sbjct: 358 EEKVTDHNIAQLQDMMNKGLCLTYTDANSITYSLDAGKDNPNKKHTILKVGEIVNRRVFD 417
Query: 178 GDIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLF 229
GDIVF+NRPP+T KHS++A V +H+DHT+KINPLIC PLGADFDGDC +L
Sbjct: 418 GDIVFLNRPPSTDKHSVEAFYVQVHNDHTIKINPLICDPLGADFDGDCPNLL 469
>A9SIX8_PHYPA (tr|A9SIX8) DNA-directed RNA polymerase OS=Physcomitrella patens
subsp. patens GN=NRPDA1501 PE=3 SV=1
Length = 2458
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 130/403 (32%), Positives = 203/403 (50%), Gaps = 15/403 (3%)
Query: 10 LRKLLRKVEIIRSSRSGEPNFESHEVEANDLQSVVDQYLQIRGCAKPARDIET-HFGVNK 68
L+ L+ ++ I+ +R+G+ E LQ + +YL+ +G K E N
Sbjct: 632 LQNLVNEIGRIQRTRTGKIMKRGQRDEVKVLQVLTAEYLREKGAPKAVPGKEPLKKDRNG 691
Query: 69 ELSDASNKAWL-DKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVN 127
+ + W D + ++ KG +++R+V+ GD I +G+PLEIAQ++T ER
Sbjct: 692 RFTKQDDHRWTKDWISQNYLGKGGNYTARAVVAGDPSLAIETIGVPLEIAQKLTVPERAT 751
Query: 128 LHNMCFLQKLVDENLCLAYKEGV--STYSLRE-------GSKGHTYLKPGQIVHRRIMDG 178
N LQ+ VD L G +T +R + HT ++ G ++HR I DG
Sbjct: 752 KWNRSKLQEYVDRTQMLQQGSGKPGATRIVRNEEAFQVWANSTHT-VQIGDVIHRNIQDG 810
Query: 179 DIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKA 238
D V++NRPP+ HKHSL AL V +H + INPL+C P ADFDGD H+F PQSL A A
Sbjct: 811 DFVYVNRPPSVHKHSLMALKVQVHYGLVLTINPLVCPPFNADFDGDIFHVFIPQSLQAIA 870
Query: 239 EVVELFSVEKQLLSSHSGNLNLQLSTDSLLSLKMLV-KKGFMDRAAANQLAMFLSLPLPR 297
E+ L +V +Q++S H G L L+ D+LL+ +L K +D+A +QL ++ P
Sbjct: 871 ELEHLMAVPQQIISDHGGQPLLGLTQDTLLAAYLLTSSKLLVDKAGMDQLCLWALKQPPD 930
Query: 298 PALLKAGSGDSYWTSIQILQCALP--LSFDCTGGRYLIRQSDILEFDLSRDVLPAVINEI 355
A++K+ G +WT QI LP L I +++ + L I
Sbjct: 931 AAIVKSPKGGPFWTGEQIFGLTLPTDLQVGAPHEEVFIEGGEVIRWSNGAKSLRKDSEGI 990
Query: 356 AASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDFSIS 398
AA++ GP +N+ + +L + +GFS GL DF ++
Sbjct: 991 AAALCVQLGPVALVNYLNTATGLLHAWLQMHGFSTGLADFQVT 1033
>D8RLP4_SELML (tr|D8RLP4) DNA-directed RNA polymerase OS=Selaginella
moellendorffii GN=SELMODRAFT_441655 PE=3 SV=1
Length = 1438
Score = 197 bits (501), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 138/408 (33%), Positives = 211/408 (51%), Gaps = 19/408 (4%)
Query: 4 DPSMTFLRKLLRKVEIIRSSRSGEPNFESHEVEANDLQSVVDQYLQIRGCAKPARDIETH 63
D + L+ LL K++ I +R + E + ++Q+ Q ++ D +
Sbjct: 275 DKTTKNLKHLLTKIKSIVYTRDEDKISLLTEQKVMEIQAAATQCIRANPLYGNVSDEDPR 334
Query: 64 FGVNKELSDASNK-AWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITF 122
+G +SD S + L ++SL K G S+R+V+ GD ++ E+GI IA +
Sbjct: 335 YG---NVSDESKPLSGLHFLRSL-TGKYCGSSARAVVIGDPALKLEEIGISARIAAGLVV 390
Query: 123 EERVNLHNMCFLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVF 182
E V N+ FLQ N L G + R K L+ G ++HR + DGD VF
Sbjct: 391 LETVTSSNIIFLQSYAYNNPGLKVVRGGEVCTARSCKK----LQVGDVIHRSLKDGDQVF 446
Query: 183 INRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVE 242
+NRPPT HKH+L L + ++ +NPLIC PL ADFDGD + L+ PQSL +AEV E
Sbjct: 447 VNRPPTFHKHALIGLKSKVIRNNVFAVNPLICPPLFADFDGDTLALYLPQSLQVRAEVAE 506
Query: 243 LFSVEKQLLSSHSGNLNLQLSTDSLLSLKMLVKKG-FMDRAAANQLAMFL-SLPLPRPAL 300
L ++ KQL+SS G + L+ D+LL ++ +K F+D+ +QL M+ S +P PA+
Sbjct: 507 LVALPKQLVSSQGGQSIIGLTQDALLGAHLMTRKNVFLDKLDMDQLRMWCPSAEVPVPAI 566
Query: 301 LKAGSGDSYWTSIQILQCALPLSFDCTG--GRYLIRQSDILEFDLSRDVLPAVINE--IA 356
+K+ WT Q+ Q LP +FD G +IRQ +IL + D A + + +
Sbjct: 567 VKSPRKSPLWTGQQLFQMTLPTTFDWESDDGGLIIRQGEILR---TSDKSSAWLGKDGLM 623
Query: 357 ASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDFSISG-AVKR 403
++ GP AL D+ Q + ++ I GFSVGL DF ++ AV R
Sbjct: 624 TTICRRYGPDRALEHLDIAQGIAVDWISERGFSVGLCDFYMAADAVSR 671
>D8RN79_SELML (tr|D8RN79) DNA-directed RNA polymerase OS=Selaginella
moellendorffii GN=SELMODRAFT_413061 PE=3 SV=1
Length = 1444
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 138/408 (33%), Positives = 210/408 (51%), Gaps = 19/408 (4%)
Query: 4 DPSMTFLRKLLRKVEIIRSSRSGEPNFESHEVEANDLQSVVDQYLQIRGCAKPARDIETH 63
D + L+ LL K++ I +R + E + ++Q+ Q ++ D +
Sbjct: 278 DKTTKNLKHLLTKIKSIVYTRDEDKISLLTEQKVMEIQAAATQCIRANPLYGNVSDEDPR 337
Query: 64 FGVNKELSDASNK-AWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITF 122
+G +SD S + L ++SL K G S+R+V+ GD ++ E+GI IA +
Sbjct: 338 YG---NVSDESKPLSGLQFLRSL-TGKYCGSSARAVVIGDPALKLEEIGISARIAAGLVV 393
Query: 123 EERVNLHNMCFLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVF 182
E V N+ LQ N L G + R K L+ G ++HR + DGD VF
Sbjct: 394 LETVTSSNIISLQSYAYNNPGLKVVRGGEVCTGRSCKK----LRVGDVIHRSLKDGDQVF 449
Query: 183 INRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVE 242
+NRPPT HKH+L L + ++ +NPLIC PL ADFDGD + L+ PQSL +AEV E
Sbjct: 450 VNRPPTFHKHALIGLKSKVIRNNVFAVNPLICSPLFADFDGDTLALYLPQSLQVRAEVAE 509
Query: 243 LFSVEKQLLSSHSGNLNLQLSTDSLLSLKMLVKKG-FMDRAAANQLAMFL-SLPLPRPAL 300
L ++ KQL+SS G + L+ D+LL ++ +K F+D+ +QL M+ S +P PA+
Sbjct: 510 LVALPKQLVSSQGGQSIIGLTQDALLGAHLMTRKNVFLDKLDMDQLRMWCPSAKVPVPAI 569
Query: 301 LKAGSGDSYWTSIQILQCALPLSFDCTG--GRYLIRQSDILEFDLSRDVLPAVINE--IA 356
+K+ WT Q+ Q LP +FD GR +IRQ +IL + D A + + +
Sbjct: 570 VKSPRKSPLWTGKQLFQMTLPTTFDSESDDGRLIIRQGEILR---TSDKSSAWLGKDGLM 626
Query: 357 ASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDFSISG-AVKR 403
++ GP AL D Q + ++ I GFSVGL DF ++ AV R
Sbjct: 627 TTICRRYGPDRALEHLDTAQGIAVDWISERGFSVGLCDFYMAADAVSR 674
>Q1L5X5_ANTMA (tr|Q1L5X5) DNA-directed RNA polymerase (Fragment) OS=Antirrhinum
majus GN=RPD1 PE=2 SV=1
Length = 1112
Score = 164 bits (416), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 103/308 (33%), Positives = 162/308 (52%), Gaps = 6/308 (1%)
Query: 96 RSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDENLCLAYKEGVSTYSL 155
R+V+ GD R++E+G+P+EIA+ + + + L N L+ D L + V+
Sbjct: 2 RTVVVGDPRIRVDEIGLPIEIAKNMLVSDNIYLWNWDKLESCCDLMLRRNGQFSVTRDGQ 61
Query: 156 REGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALVVYIHD-DHTVKINPLIC 214
+ + L+ G ++R ++DGDIV INRPP+ H+HSL AL V I + V INPL C
Sbjct: 62 KTCVRSADMLRTGDSIYRPLIDGDIVLINRPPSIHQHSLIALSVKILPINSVVSINPLTC 121
Query: 215 GPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHSGNLNLQLSTDSLLSLKMLV 274
PL DFDGDC+H + PQS+ + E+ EL ++ KQL++ SG L LS DSL + ++
Sbjct: 122 SPLRGDFDGDCLHGYVPQSVNTRVELKELVTLNKQLVNGQSGQNLLSLSQDSLTAAHLIS 181
Query: 275 KKG-FMDRAAANQLAMFLSLPLPRPALLKAGSGD-SYWTSIQILQCALPLSFDCTGGR-- 330
+ G F+++ QL MF + PA++++ S + S+WT Q+ LPL F+ +
Sbjct: 182 QDGVFLNKPEMQQLQMFSAWIPMLPAIIQSTSRETSFWTGKQLFSQLLPLDFEFSNASNG 241
Query: 331 YLIRQSDILEFDLSRDVLPAVINEIAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSV 390
I+ +++ F L E P++ L+ Q VL E + G SV
Sbjct: 242 VGIKHGELVSFSDGSSWLRDS-GENLFQCLLRHCPEKTLDILHAAQEVLCEWLSRRGLSV 300
Query: 391 GLHDFSIS 398
L D +S
Sbjct: 301 SLSDLCLS 308
>D8T4Y5_SELML (tr|D8T4Y5) DNA-directed RNA polymerase (Fragment) OS=Selaginella
moellendorffii GN=SELMODRAFT_1456 PE=3 SV=1
Length = 350
Score = 164 bits (415), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 118/360 (32%), Positives = 180/360 (50%), Gaps = 32/360 (8%)
Query: 87 ISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLV-DENLCLA 145
+SK + + + +++TGD Y + E+ IP EI++++T ERV N LQ +V D +CLA
Sbjct: 2 LSKMTQYCAIALLTGDAYLGVEEILIPDEISRQVTLPERVTSFNADKLQAIVNDLQVCLA 61
Query: 146 -----------YKEGV-----STYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTT 189
Y+ G T LR S L+ G +VHR + DGD+VF++R P
Sbjct: 62 CLYCFGFDFREYQVGFIEQNGVTCDLRGQSAERRQLEIGAVVHRPVRDGDLVFVSRHPAV 121
Query: 190 HKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQ 249
+KHS+ AL IH + +INPL+C PL DFDGD +H+++PQ+ A+ E EL +++Q
Sbjct: 122 YKHSVIALTARIHPGKSFRINPLVCSPLKGDFDGDRLHVYFPQAEDARVETRELMGLKQQ 181
Query: 250 LLSSHSGNLNLQLSTDSLLSLKMLVKK-GFMDRAAANQLAMFLS-LPLPRPALLKAGSGD 307
+ SGN + L+ D L++ MLV + F QL + LP PA++K
Sbjct: 182 FQALSSGNPVISLTQDMLVAAYMLVSRHSFFTAPQIQQLGLHADRWSLPDPAIVKP---R 238
Query: 308 SYWTSIQILQCALP--LSFDCTGGRYLIRQSDILEFDLSRDVLPAVINEIAASVFFGKGP 365
+ WT Q LP L+F G LI +++ L + + ++ G
Sbjct: 239 ALWTGFQAFGLLLPSELAFSTRTG-VLISDGELVTAGDDGSWLGGGTDSLLRAIHEKFGV 297
Query: 366 QEALNFFDVLQPVLMESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIYNE 425
EA+ + D +L E + GFS+GL DFS+S DR +S LL + Y E
Sbjct: 298 AEAIAYLDSCCSMLKEFLHIEGFSIGLGDFSVS-------DRQREAISELLAYAKENYVE 350
>D8RCH5_SELML (tr|D8RCH5) DNA-directed RNA polymerase (Fragment) OS=Selaginella
moellendorffii GN=SELMODRAFT_90820 PE=3 SV=1
Length = 510
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 117/360 (32%), Positives = 182/360 (50%), Gaps = 32/360 (8%)
Query: 87 ISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLV-DENLCLA 145
+SK + + + +++TGD Y + E+ IP EI++++T ERV N LQ +V D +CLA
Sbjct: 2 LSKMTQYCAIALLTGDAYLGVEEILIPDEISRQVTLPERVTGFNADKLQAIVNDLQVCLA 61
Query: 146 -----------YKEGV-----STYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTT 189
Y+ G T LR S L+ G +VHR + DGD+VF++R P
Sbjct: 62 CLYCFGFDFRKYQVGFIEQNGVTCDLRGQSAERRQLEIGAVVHRPVRDGDLVFVSRHPAV 121
Query: 190 HKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQ 249
+KHS+ AL+ IH + +INPL+C PL DFDGD +H+++PQ+ A+ E EL +++Q
Sbjct: 122 YKHSVIALIARIHPGKSFRINPLVCSPLKGDFDGDRLHVYFPQAEDARVETKELMGLKQQ 181
Query: 250 LLSSHSGNLNLQLSTDSLLSLKMLVKKG-FMDRAAANQLAMFLS-LPLPRPALLKAGSGD 307
+ SGN + L+ D L++ +LV + F QLA+ LP PA++K
Sbjct: 182 FQALSSGNPVISLTQDMLVAAYILVSRHIFFTAPQMQQLALHADRWSLPDPAIVKP---L 238
Query: 308 SYWTSIQILQCALP--LSFDCTGGRYLIRQSDILEFDLSRDVLPAVINEIAASVFFGKGP 365
+ WT Q LP L+F G LI +++ L + + ++ G
Sbjct: 239 ALWTGFQAFGLLLPSELAFSTRTG-VLISDGELVTAGDDGSWLGGGTDSLLRAIHEKFGV 297
Query: 366 QEALNFFDVLQPVLMESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIYNE 425
EA+ + D +L E + GFS+GL DF++S DR +S LL + Y E
Sbjct: 298 AEAIGYLDSCCSMLKEFLHIEGFSIGLGDFNVS-------DRQREAISELLAYAKENYVE 350
>M0TPQ4_MUSAM (tr|M0TPQ4) DNA-directed RNA polymerase OS=Musa acuminata subsp.
malaccensis PE=3 SV=1
Length = 1674
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 109/324 (33%), Positives = 174/324 (53%), Gaps = 11/324 (3%)
Query: 82 MKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKL-VDE 140
+K + +SK + R + GD ++ E+GIP +I++ + E+VN +N L+KL +
Sbjct: 178 LKDVVLSKRTDNVFRMTMVGDPKIKLQEIGIPFDISESLIVAEQVNSYN---LEKLNMSC 234
Query: 141 NLCLAYKEGVSTYSLREGSKGH--TYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALV 198
NL L KEG++T S + + H L+ G IV R + +GDI+ +NRPP+ H+HSL AL
Sbjct: 235 NLHLLRKEGLNTRSKGQLTSLHKTNQLQVGDIVSRPLENGDIILVNRPPSVHQHSLIALS 294
Query: 199 VYIHDDHTV-KINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHSGN 257
V I +V INPL C PL DFDGDC+H + PQS+ + E+ EL S++ QL ++ G
Sbjct: 295 VMILPIQSVISINPLCCAPLLGDFDGDCLHGYVPQSIGCRVELQELLSLDHQLFNAQDGR 354
Query: 258 LNLQLSTDSLLSLKMLV-KKGFMDRAAANQLAMFLSLPLPRPALLKAGSGD-SYWTSIQI 315
+ L+ DSL + +L + F+++ QLAM P+P PA++K WT Q+
Sbjct: 355 SLVSLTHDSLTAAYLLTANREFLNKVDMQQLAMLCPFPMPPPAVVKTPKFQIPLWTGEQL 414
Query: 316 LQCALPLSFD-CTGGRYLIRQSDILEFDLSRDVLPAVINEIAASVFFGKGPQEALNFFDV 374
LP + D R +I + +++ L + ++F G ++AL++
Sbjct: 415 FSMLLPPTMDFGVNSRNMISKGEVMASLGGSFWLQNTTTGLFTTMFKHYG-RKALDYLCC 473
Query: 375 LQPVLMESIFSNGFSVGLHDFSIS 398
Q +L E + G SV L D +S
Sbjct: 474 SQELLCEYLTLRGLSVSLGDVYLS 497
>J3MZZ4_ORYBR (tr|J3MZZ4) DNA-directed RNA polymerase OS=Oryza brachyantha
GN=OB09G25730 PE=3 SV=1
Length = 1779
Score = 161 bits (408), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 117/343 (34%), Positives = 174/343 (50%), Gaps = 22/343 (6%)
Query: 65 GVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEE 124
G + +D WL K + +SK S + RSV+ GD +NE+G+P+++A + E
Sbjct: 631 GESSTSTDTYGTKWL---KDIILSKRSDNAFRSVMVGDPKINLNEIGMPMDLALNLVVSE 687
Query: 125 RVNLHNM------CFLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDG 178
+V+ +N C L L E L L + G + +R+ +K L+ G I +R + DG
Sbjct: 688 QVSSYNFETINLKCNLHLLTKEVL-LVRRNGRLIF-IRKANK----LEIGDIAYRPLQDG 741
Query: 179 DIVFINRPPTTHKHSLQALVVYIHDDHT-VKINPLICGPLGADFDGDCVHLFYPQSLAAK 237
D++ +NRPP+ H+HSL AL I H+ V INPL CGP DFDGDC+H + PQSL ++
Sbjct: 742 DLILVNRPPSVHQHSLIALSAKILSSHSAVSINPLCCGPFQGDFDGDCLHGYVPQSLQSR 801
Query: 238 AEVVELFSVEKQLLSSHSGNLNLQLSTDSLLSLKMLVKKG-FMDRAAANQLAMFLS--LP 294
E+ EL + QLL++ G + L+ DSL + L F+ +A QL M S
Sbjct: 802 VELDELVGLSGQLLNAQDGRSLVSLTHDSLTAAHQLTSSDVFLQKAEFQQLQMLCSSVSS 861
Query: 295 LPRPALLKAG-SGDSYWTSIQILQCALPLSFDCTGGRYL-IRQSDILEFDLSRDVLPAVI 352
P P++LK+ S WT Q+ +P + L I+ S++L F L
Sbjct: 862 TPMPSILKSSKSQGPLWTGKQLFGMLIPSGMNINFDEKLHIKDSEVLAFSSGSFWLQNNT 921
Query: 353 NEIAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDF 395
+ + SV F + +AL F Q VL E + G SV L DF
Sbjct: 922 SSL-FSVMFEEYGCKALEFLSSSQDVLCEFLTMRGLSVSLSDF 963
>K4CP21_SOLLC (tr|K4CP21) DNA-directed RNA polymerase OS=Solanum lycopersicum
GN=Solyc08g080210.2 PE=3 SV=1
Length = 1206
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 112/332 (33%), Positives = 170/332 (51%), Gaps = 18/332 (5%)
Query: 79 LDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLV 138
L +K L ++K + + R V+ GD + E+GIP +A+ + E ++L N + L
Sbjct: 53 LKYVKELVLAKRTNHAFRMVVVGDPNIELGEIGIPCHVAENLHMAETLSLRNWERMTDLC 112
Query: 139 DENL-----CLAYKEGVST-YSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKH 192
D + L + GV S+ +G L+ G I+HR ++DGD+V INRPP+ H+H
Sbjct: 113 DLMILQRGGILVRRNGVLVRISVMDG------LQKGDIIHRPLVDGDVVMINRPPSIHQH 166
Query: 193 SLQALVVYIHDDHTV-KINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLL 251
SL AL V I ++V INPL+C P DFDGDC+H + PQS+ + E+ EL ++++QLL
Sbjct: 167 SLIALSVRILPINSVLSINPLVCSPFRGDFDGDCLHGYIPQSIDSTIELSELVALKQQLL 226
Query: 252 SSHSGNLNLQLSTDSLLSLKMLVKKG-FMDRAAANQLAMFLSLPLPRPALLKAGSGD-SY 309
+G L LS DSL + ++++ G F+DR QL MF L A++KA G+ Y
Sbjct: 227 DGQNGQNLLSLSHDSLTAAHLILEPGVFLDRFQMQQLQMFCPRQLGMTAIVKAPPGNICY 286
Query: 310 WTSIQILQCALP--LSFDCTGGRYLIRQSDILEFDLSRDVLPAVINEIAASVFFGKGPQE 367
WT Q+ LP L + I + +I+ L + + S+ G +
Sbjct: 287 WTGKQLFSLLLPSDLEYVFPSNGVCISEGEIVTSSGGSSWLRDASDNLFYSLVKHNG-GD 345
Query: 368 ALNFFDVLQPVLMESIFSNGFSVGLHDFSISG 399
L+ Q VL E + G SV L D IS
Sbjct: 346 TLDLLYAAQTVLCEWLSMRGLSVSLSDLYISA 377
>K7LMQ8_SOYBN (tr|K7LMQ8) DNA-directed RNA polymerase OS=Glycine max PE=3 SV=1
Length = 1454
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 120/339 (35%), Positives = 172/339 (50%), Gaps = 18/339 (5%)
Query: 72 DASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNM 131
+A N + L +K + + K + S R+V+ GD ++EVGIP IA+ + E VN N
Sbjct: 296 NACNSSGLRWIKDVVLGKRNDSSLRTVVVGDPDLELSEVGIPCHIAESLQVSEYVNRQNR 355
Query: 132 CFLQKLVDENLCLAYKEGVSTYSLREGSKGHTY----LKPGQIVHRRIMDGDIVFINRPP 187
L + L K V R GSK H Y L+ G ++R + DGD V INRPP
Sbjct: 356 EKLLYCCELRLLEKGKIDV----CRNGSKVHLYKKEDLQIGDKIYRPLADGDKVLINRPP 411
Query: 188 TTHKHSLQALVVYIHD-DHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSV 246
+ H+HS+ AL V + V INPL C PL DFDGDC+H + PQS+ A+ E+ EL ++
Sbjct: 412 SIHQHSMIALTVRVLPISSVVCINPLCCSPLRGDFDGDCLHGYIPQSVTARIELNELVAL 471
Query: 247 EKQLLSSHSGNLNLQLSTDSLLSLKMLVKKGFMDRAAANQLAMFLSLPLPR---PALLKA 303
++QL++ SG L LS DSL + +L++ G + Q LS+ R PA++KA
Sbjct: 472 DRQLINGQSGRNLLSLSQDSLTAAYLLMEDGVLLNVYQMQQLQMLSISDKRLIPPAVVKA 531
Query: 304 -GSGDSYWTSIQILQCALPLSFDCTGGRYLIRQSD---ILEFDLSRDVLPAVINEIAASV 359
S S W+ QI LP FD + + SD + + S + + N + V
Sbjct: 532 PSSNSSLWSGKQIFSMLLPYDFDYSFPSDGVVVSDGELVSSSEASGWLRDSDYNVFQSLV 591
Query: 360 FFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDFSIS 398
+G + LNF Q VL E + GFSV L D +S
Sbjct: 592 EHYQG--KTLNFLYTAQKVLCEWLSMTGFSVSLSDLYLS 628
>M5WEG2_PRUPE (tr|M5WEG2) Uncharacterized protein OS=Prunus persica
GN=PRUPE_ppa000278mg PE=4 SV=1
Length = 1356
Score = 157 bits (397), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 101/264 (38%), Positives = 150/264 (56%), Gaps = 12/264 (4%)
Query: 65 GVNKELS--DASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITF 122
GV EL D S + L +K + + K S R+V+ GD +++E+GIP +IA+R+
Sbjct: 265 GVANELGSHDPSKTSGLRWIKDVVLGKRSDHCFRTVVVGDPNIKLSEIGIPCQIAERLQI 324
Query: 123 EERVNLHNMCFLQKLVDENLCLAYKEGVSTYSLREGS----KGHTYLKPGQIVHRRIMDG 178
E +N N ++KL D + L + R+GS + L+ G ++R + DG
Sbjct: 325 SENLNRWN---IEKL-DASCNLRLMVKGEMHVRRKGSLVWVRQTDELQMGDTIYRPLSDG 380
Query: 179 DIVFINRPPTTHKHSLQALVVYIHD-DHTVKINPLICGPLGADFDGDCVHLFYPQSLAAK 237
DIV INRPP+ H+HSL AL V I V INPL C P DFDGDC+H + PQS A+
Sbjct: 381 DIVLINRPPSIHQHSLIALSVKILPITSVVSINPLCCSPFRGDFDGDCLHGYIPQSNDAR 440
Query: 238 AEVVELFSVEKQLLSSHSGNLNLQLSTDSLLSLKMLVKKG-FMDRAAANQLAMFLSLPLP 296
E+ EL +++KQL++ SG L LS DSL + ++++ G ++ QL MF LP
Sbjct: 441 VELRELVALDKQLINGQSGRNLLSLSQDSLTAAHLIMEDGTLLNLLEMQQLEMFCWDVLP 500
Query: 297 RPALLKAGSGDSYWTSIQILQCAL 320
PA++KA S +S+W S++ L +L
Sbjct: 501 SPAVIKAPSLNSHWLSMRGLSVSL 524
>G7KER5_MEDTR (tr|G7KER5) DNA-directed RNA polymerase OS=Medicago truncatula
GN=MTR_5g011000 PE=3 SV=1
Length = 1687
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 113/355 (31%), Positives = 176/355 (49%), Gaps = 26/355 (7%)
Query: 59 DIETHFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQ 118
+I T K +A N + L MK + + K + + R+V+ GD ++E+GIP +IA+
Sbjct: 451 NIFTELQQRKVGENACNSSGLRWMKDVVLGKRNDCTFRTVVVGDPDLELSEIGIPCQIAE 510
Query: 119 RITFEERVNLHN-----MCFLQKLVDENLCLAYKEG--VSTYSLREGSKGHTYLKPGQIV 171
+ E VN N C +L+++ + G V Y + L+ G I
Sbjct: 511 ALQVSEYVNRQNRQNLLYCCELRLLEKGQINVRRNGNPVVLYKKED-------LQIGDIF 563
Query: 172 HRRIMDGDIVFINRPPTTHKHSLQALVVYIHD-DHTVKINPLICGPLGADFDGDCVHLFY 230
+R ++DGD V INRPP+ H+HS+ AL V + V INP+ C PL DFDGDC+H +
Sbjct: 564 YRPLVDGDKVLINRPPSIHQHSMIALTVRVLPISSVVSINPICCSPLRGDFDGDCLHGYI 623
Query: 231 PQSLAAKAEVVELFSVEKQLLSSHSGNLNLQLSTDSLLSLKMLVKKGF-MDRAAANQLAM 289
PQS+ A+ E+ EL ++++QL++ SG L LS DSL + +L++ G + QL M
Sbjct: 624 PQSVGARVELNELVALDRQLINGQSGGNLLSLSQDSLTAAHLLLEDGVGFNIYQVQQLEM 683
Query: 290 FLSLPLPRPALLKAGSGDS-YWTSIQILQCALPLSFDCT--GGRYLIRQSDILEFDLSRD 346
+ L PA+ KA S ++ +W+ Q+ LP FD ++ +++ S
Sbjct: 684 LCNKELTSPAIFKAPSSNTPFWSGKQLFSMLLPSKFDYAFPSNDVFVKDGELISCSESSG 743
Query: 347 VLPAVINEIAASV---FFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDFSIS 398
L N + S+ F GK L+ Q L E + GFSV L D +S
Sbjct: 744 WLRDSENNVFQSLVEHFQGK----ILDVLHGAQKALCEWLSMTGFSVSLSDLYLS 794
>D7KU36_ARALL (tr|D7KU36) DNA-directed RNA polymerase OS=Arabidopsis lyrata
subsp. lyrata GN=ARALYDRAFT_893170 PE=3 SV=1
Length = 1456
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 106/342 (30%), Positives = 170/342 (49%), Gaps = 23/342 (6%)
Query: 71 SDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHN 130
SD L MK + + K S + R+V+ GD +++E+GIP IA+R+ E +N N
Sbjct: 298 SDTPKLCGLRFMKDVLLGKRSDHTFRTVVVGDPSLKLHEIGIPERIAKRLQVSEHLNNWN 357
Query: 131 ----MCFLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRP 186
+ F + +N + + G ++R L+ G + R +MDGD V +NRP
Sbjct: 358 NERLVTFCSPNLFDNKEVHVRRGDRLVAIRVSD-----LQTGDKIFRNLMDGDTVLMNRP 412
Query: 187 PTTHKHSLQALVVYI-HDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFS 245
P+ H+HSL A+ V + V +NP+ C P DFDGDC+H + PQS+ AK E+ EL +
Sbjct: 413 PSIHQHSLIAMTVRVLPTTSVVSLNPICCLPFRGDFDGDCLHGYVPQSIQAKVELDELVA 472
Query: 246 VEKQLLSSHSGNLNLQLSTDSLLS--LKMLVKKGFMDRAAANQLAMFLSLPLPRPALLKA 303
++KQL++ +G L L DSL + L + K +++RA QL M+ LP PA++KA
Sbjct: 473 LDKQLINRQNGRNLLSLGQDSLTAAYLVNVEKNCYLNRAQMQQLQMYCPFQLPPPAIIKA 532
Query: 304 --GSGDSYWTSIQILQCALPLSFDCTG--GRYLIRQSDILEFDLSRDVLPAVINEIAASV 359
S + WT +Q+ P FD T ++ ++L F A + + +
Sbjct: 533 SPSSTEPQWTGMQLFGMLFPPGFDYTYPLNDVVVSNGELLSFSEGS----AWLRDGEGNF 588
Query: 360 FFGKGPQEALNFFDVL---QPVLMESIFSNGFSVGLHDFSIS 398
G + D++ Q +L + + G SV L D +S
Sbjct: 589 IQGLIKHDKRKVLDIIYSAQEMLSQWLLMRGLSVSLADLYLS 630
>J3M0K5_ORYBR (tr|J3M0K5) DNA-directed RNA polymerase OS=Oryza brachyantha
GN=OB04G29300 PE=3 SV=1
Length = 1474
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 113/343 (32%), Positives = 174/343 (50%), Gaps = 22/343 (6%)
Query: 65 GVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEE 124
G + +D WL K + +SK S + RS++ GD +NE+GIP+++A + E
Sbjct: 326 GESSTSTDTYGTKWL---KDIILSKRSDNAFRSIMVGDPKISLNEIGIPMDLALNLVVSE 382
Query: 125 RVNLHNM------CFLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDG 178
+V+ +N C L L E L L + G + +R+ +K L+ G I +R + DG
Sbjct: 383 QVSYYNFETINLKCNLHLLTKEVL-LVRRNGKLIF-VRKANK----LQIGDIAYRLLQDG 436
Query: 179 DIVFINRPPTTHKHSLQALVVYIHDDHT-VKINPLICGPLGADFDGDCVHLFYPQSLAAK 237
D+V +NRPP+ H+HSL AL + H+ V INPL C P DFDGDC+H + PQS+ ++
Sbjct: 437 DLVLVNRPPSVHQHSLVALSAKLLPVHSAVSINPLCCDPFKGDFDGDCLHGYVPQSIQSR 496
Query: 238 AEVVELFSVEKQLLSSHSGNLNLQLSTDSLLSLKMLVKKG-FMDRAAANQLAMFLS--LP 294
E+ EL + +QLL++ G + L+ DSL + L + +A QL M S
Sbjct: 497 VELEELVGLNRQLLNAQDGRSLVSLTHDSLAAAHQLTSADILLQKAEFQQLQMLCSSISS 556
Query: 295 LPRPALLK-AGSGDSYWTSIQILQCALPLSFDCTGGRYL-IRQSDILEFDLSRDVLPAVI 352
P P+++K A S WT Q+ LP + + + L I+ S++L L
Sbjct: 557 TPMPSVIKSANSQGPLWTGKQLFGLLLPSGMNISFDQNLHIKDSEVLTCSSGSLWLQNNT 616
Query: 353 NEIAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDF 395
+ + SV F + ++AL F Q VL E + G SV L D
Sbjct: 617 SSL-FSVMFKEYGRKALQFLSSTQDVLCEFLTIRGLSVSLSDL 658
>Q1L5X6_SOLLC (tr|Q1L5X6) DNA-directed RNA polymerase (Fragment) OS=Solanum
lycopersicum GN=RPD1 PE=2 SV=1
Length = 1138
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 108/315 (34%), Positives = 161/315 (51%), Gaps = 18/315 (5%)
Query: 96 RSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDENL-----CLAYKEGV 150
R+V+ GD + E+GIP A+ + E ++L N + L D + L + GV
Sbjct: 2 RTVVVGDPNIELGEIGIPCXXAENLHMAETLSLRNWERMTDLCDLMILQRGGILVRRNGV 61
Query: 151 ST-YSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALVVYIHDDHTV-K 208
S+ +G L+ G I+HR ++DGD+V INRPP+ H+HSL AL V I ++V
Sbjct: 62 LVRISVMDG------LQKGDIIHRPLVDGDVVMINRPPSIHQHSLIALSVRILPINSVLS 115
Query: 209 INPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHSGNLNLQLSTDSLL 268
INPL+C P DFDGDC+H + PQS+ + E+ EL ++++QLL +G L LS DSL
Sbjct: 116 INPLVCSPFRGDFDGDCLHGYIPQSIDSTIELSELVALKQQLLDGQNGQNLLSLSHDSLT 175
Query: 269 SLKMLVKKG-FMDRAAANQLAMFLSLPLPRPALLKAGSGD-SYWTSIQILQCALP--LSF 324
+ ++++ G F+DR QL MF L A++KA G+ YWT Q+ LP L +
Sbjct: 176 AAHLILEPGVFLDRFQMQQLQMFCPRQLGMTAIVKAPPGNICYWTGKQLFSLLLPSDLEY 235
Query: 325 DCTGGRYLIRQSDILEFDLSRDVLPAVINEIAASVFFGKGPQEALNFFDVLQPVLMESIF 384
I + +I+ L + + S+ G + L+ Q VL E +
Sbjct: 236 VFPSNGVCISEGEIVTSSGGSSWLRDASDNLFYSLVKHNG-GDTLDLLYAAQTVLCEWLS 294
Query: 385 SNGFSVGLHDFSISG 399
G SV L D IS
Sbjct: 295 MRGLSVSLSDLYISA 309
>C0JR65_MAIZE (tr|C0JR65) DNA-directed RNA polymerase OS=Zea mays PE=2 SV=1
Length = 1444
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 113/337 (33%), Positives = 173/337 (51%), Gaps = 23/337 (6%)
Query: 71 SDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHN 130
+D WL K + +SK S RS++ GD ++ E+GIP +++ + E V+ +N
Sbjct: 319 TDTYGMKWL---KDVVLSKRSDNVFRSIMVGDPKIKLWEIGIPEDLSSSLVVSEHVSSYN 375
Query: 131 M------CFLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFIN 184
C L L + L + G + LR+ + L+ G I +R + DGDI+ IN
Sbjct: 376 FQSTNLKCNLHLLAKQEL-FIRRNGKLMF-LRKADQ----LEIGDIAYRPLQDGDIILIN 429
Query: 185 RPPTTHKHSLQALVVYIHDDHTV-KINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVEL 243
RPP+ H+HSL AL I H+V INPL C P DFDGDC+H + PQS+ ++ E+ EL
Sbjct: 430 RPPSVHQHSLIALSAKILPIHSVVSINPLCCTPFAGDFDGDCLHGYIPQSIRSRVELEEL 489
Query: 244 FSVEKQLLSSHSGNLNLQLSTDSLLSLKMLVKKG-FMDRAAANQLAMF-LSLPLPRPALL 301
S+ QLL+ G + L+ DSL + +L F+ ++ QL M LS+ P PA++
Sbjct: 490 VSLHNQLLNMQDGRNLVSLTHDSLAAAHLLTSTDVFLKKSELQQLQMLCLSVSTPAPAVI 549
Query: 302 KAGS-GDSYWTSIQILQCALP--LSFDCTGGRYLIRQSDILEFDLSRDVLPAVINEIAAS 358
K+ + S WT Q+ LP ++F C +++ S++L L L + + S
Sbjct: 550 KSMNFQGSLWTGKQLFSMLLPSGMNFSCDTELHIM-DSEVLTCSLGSSWLQNNTSGL-FS 607
Query: 359 VFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDF 395
V F + +AL+F Q VL E + G SV L D
Sbjct: 608 VMFKQYGCKALDFLSSAQEVLCEFLTMRGLSVSLSDL 644
>C0JR68_MAIZE (tr|C0JR68) DNA-directed RNA polymerase OS=Zea mays PE=2 SV=1
Length = 1444
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 113/337 (33%), Positives = 173/337 (51%), Gaps = 23/337 (6%)
Query: 71 SDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHN 130
+D WL K + +SK S RS++ GD ++ E+GIP +++ + E V+ +N
Sbjct: 319 TDTYGMKWL---KDVVLSKRSDNVFRSIMVGDPKIKLWEIGIPEDLSSSLVVSEHVSSYN 375
Query: 131 M------CFLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFIN 184
C L L + L + G + LR+ + L+ G I +R + DGDI+ IN
Sbjct: 376 FQSTNLKCNLHLLAKQEL-FIRRNGKLMF-LRKADQ----LEIGDIAYRPLQDGDIILIN 429
Query: 185 RPPTTHKHSLQALVVYIHDDHTV-KINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVEL 243
RPP+ H+HSL AL I H+V INPL C P DFDGDC+H + PQS+ ++ E+ EL
Sbjct: 430 RPPSVHQHSLIALSAKILPIHSVVSINPLCCTPFAGDFDGDCLHGYIPQSIRSRVELEEL 489
Query: 244 FSVEKQLLSSHSGNLNLQLSTDSLLSLKMLVKKG-FMDRAAANQLAMF-LSLPLPRPALL 301
S+ QLL+ G + L+ DSL + +L F+ ++ QL M LS+ P PA++
Sbjct: 490 VSLHNQLLNMQDGRNLVSLTHDSLAAAHLLTSTDVFLKKSELQQLQMLCLSVSTPAPAVI 549
Query: 302 KAGS-GDSYWTSIQILQCALP--LSFDCTGGRYLIRQSDILEFDLSRDVLPAVINEIAAS 358
K+ + S WT Q+ LP ++F C +++ S++L L L + + S
Sbjct: 550 KSMNFQGSLWTGKQLFSMLLPSGMNFSCDTELHIM-DSEVLTCSLGSSWLQNNTSGL-FS 607
Query: 359 VFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDF 395
V F + +AL+F Q VL E + G SV L D
Sbjct: 608 VMFKQYGCKALDFLSSAQEVLCEFLTMRGLSVSLSDL 644
>C0JR66_MAIZE (tr|C0JR66) DNA-directed RNA polymerase OS=Zea mays PE=2 SV=1
Length = 871
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 113/337 (33%), Positives = 173/337 (51%), Gaps = 23/337 (6%)
Query: 71 SDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHN 130
+D WL K + +SK S RS++ GD ++ E+GIP +++ + E V+ +N
Sbjct: 319 TDTYGMKWL---KDVVLSKRSDNVFRSIMVGDPKIKLWEIGIPEDLSSSLVVSEHVSSYN 375
Query: 131 M------CFLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFIN 184
C L L + L + G + LR+ + L+ G I +R + DGDI+ IN
Sbjct: 376 FQSTNLKCNLHLLAKQEL-FIRRNGKLMF-LRKADQ----LEIGDIAYRPLQDGDIILIN 429
Query: 185 RPPTTHKHSLQALVVYIHDDHTV-KINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVEL 243
RPP+ H+HSL AL I H+V INPL C P DFDGDC+H + PQS+ ++ E+ EL
Sbjct: 430 RPPSVHQHSLIALSAKILPIHSVVSINPLCCTPFAGDFDGDCLHGYIPQSIRSRVELEEL 489
Query: 244 FSVEKQLLSSHSGNLNLQLSTDSLLSLKMLVKKG-FMDRAAANQLAMF-LSLPLPRPALL 301
S+ QLL+ G + L+ DSL + +L F+ ++ QL M LS+ P PA++
Sbjct: 490 VSLHNQLLNMQDGRNLVSLTHDSLAAAHLLTSTDVFLKKSELQQLQMLCLSVSTPAPAVI 549
Query: 302 KAGS-GDSYWTSIQILQCALP--LSFDCTGGRYLIRQSDILEFDLSRDVLPAVINEIAAS 358
K+ + S WT Q+ LP ++F C +++ S++L L L + + S
Sbjct: 550 KSMNFQGSLWTGKQLFSMLLPSGMNFSCDTELHIM-DSEVLTCSLGSSWLQNNTSGL-FS 607
Query: 359 VFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDF 395
V F + +AL+F Q VL E + G SV L D
Sbjct: 608 VMFKQYGCKALDFLSSAQEVLCEFLTMRGLSVSLSDL 644
>B9G500_ORYSJ (tr|B9G500) DNA-directed RNA polymerase OS=Oryza sativa subsp.
japonica GN=OsJ_30285 PE=3 SV=1
Length = 1384
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 113/339 (33%), Positives = 171/339 (50%), Gaps = 28/339 (8%)
Query: 72 DASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNM 131
D WL K + +SK S + RS++ GD +NE+GIP ++A + E+V+ +N
Sbjct: 269 DTYGTKWL---KDIILSKRSDNAFRSIMVGDPKINLNEIGIPTDLALNLVVSEQVSFYNF 325
Query: 132 ------CFLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINR 185
C L L E L L + G + +R+ +K L+ G I +R + DGD+V +NR
Sbjct: 326 ETINLKCNLHLLTKEVL-LVRRNGKLIF-VRKANK----LEIGDIAYRLLQDGDLVLVNR 379
Query: 186 PPTTHKHSLQALVVYIHD-DHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELF 244
PP+ H+HSL AL + V INPL C P DFDGDC+H + PQ+L ++ E+ L
Sbjct: 380 PPSVHQHSLIALSAKLLPIQSAVAINPLCCDPFKGDFDGDCLHGYVPQTLQSRVELDGLV 439
Query: 245 SVEKQLLSSHSGNLNLQLSTDSLLSLKMLVKKG-FMDRAAANQLAMFLS--LPLPRPALL 301
S+ Q+L++ G + L+ DSL + L F+ +A QL + S P P P+++
Sbjct: 440 SLSGQMLNAQDGRSLVSLTHDSLAAAHQLTSADVFLQKAEFQQLQLLCSSISPTPEPSVV 499
Query: 302 KAGS-GDSYWTSIQILQCALP----LSFDCTGGRYLIRQSDILEFDLSRDVLPAVINEIA 356
K+ + S WT Q+ LP +SFD + I+ S++L L + +
Sbjct: 500 KSANFQGSLWTGKQLFGMLLPSGMNISFD---QKLHIKDSEVLTCSSGSFWLQNNTSSV- 555
Query: 357 ASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDF 395
SV F + +AL F Q VL E + G SV L DF
Sbjct: 556 FSVMFKEYGSKALEFLSSTQDVLCEFLTMKGLSVSLSDF 594
>B9GKP9_POPTR (tr|B9GKP9) DNA-directed RNA polymerase OS=Populus trichocarpa
GN=NRPD901 PE=3 SV=1
Length = 1517
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 112/340 (32%), Positives = 168/340 (49%), Gaps = 23/340 (6%)
Query: 67 NKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERV 126
N +++AS W+ K + + K + S R VI GD + +++E+GIP IA+R+ E +
Sbjct: 337 NDYVNNASGLRWI---KDVVLGKRNDHSFRMVIVGDPHLQLHEIGIPCHIAERLQISESL 393
Query: 127 NLHNM-----CFLQKLVDENLCLAYKEG--VSTYSLREGSKGHTYLKPGQIVHRRIMDGD 179
N CF + ++ +EG V ++E L+ G I++R + DGD
Sbjct: 394 TAWNWEKLNACFEKSRFEKGDMHVRREGNLVRVRHMKE-------LRLGDIIYRPLNDGD 446
Query: 180 IVFINRPPTTHKHSLQALVVYIHDDHTV-KINPLICGPLGADFDGDCVHLFYPQSLAAKA 238
V INRPP+ H+HSL AL V + +V INPL C P ADFDGDC+H + PQS+ +
Sbjct: 447 TVLINRPPSIHQHSLIALSVKVLPVPSVLAINPLCCPPFRADFDGDCLHGYVPQSVDTRV 506
Query: 239 EVVELFSVEKQLLSSHSGNLNLQLSTDSLLSLKMLVKKG-FMDRAAANQLAMFLSLPLPR 297
E+ EL S++KQL + SG L LS DSL + ++++ F+ QL MF
Sbjct: 507 ELTELVSLDKQLTNWQSGRNLLSLSQDSLTAAHLVLEDDVFLSSFELQQLQMFRPERFLL 566
Query: 298 PALLKAGSGDSYWTSIQILQCALPLSF--DCTGGRYLIRQSDILEFDLSRDVLPAVINEI 355
PA+ + WT Q++ LP+ F D IR D++ + S + N
Sbjct: 567 PAVKAPSANALVWTGKQLISMLLPVGFDHDFPSCNVCIRDGDLVSSEGSFWLWDTDGNLF 626
Query: 356 AASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDF 395
+ V G + L+F Q VL E + G SV L D
Sbjct: 627 QSLVKHCHG--QVLDFLYAAQRVLCEWLSMRGLSVSLSDL 664
>R0HUP7_9BRAS (tr|R0HUP7) Uncharacterized protein OS=Capsella rubella
GN=CARUB_v10019657mg PE=4 SV=1
Length = 1459
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 91/257 (35%), Positives = 139/257 (54%), Gaps = 15/257 (5%)
Query: 82 MKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDEN 141
MK + + K S + R+++ GD +++E+GIP IA+RI E +N NM L V
Sbjct: 312 MKDVLLGKRSDHTFRAIVVGDPALKLHEIGIPQTIAERIQVSEILNDWNMERLSAFVLHK 371
Query: 142 LC------LAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQ 195
L + + G S ++R+ L+ G + R +MDGD V +NRPP+ H+HSL
Sbjct: 372 LIALRKREVHVRRGDSLVAIRQIKD----LQTGDKISRTLMDGDTVLMNRPPSIHQHSLI 427
Query: 196 ALVV-YIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSH 254
A+ V + V +NP+ C P DFDGDC+H + PQS+ AK E+ EL +++KQ ++
Sbjct: 428 AMSVKLLPTTSVVSLNPICCNPFRGDFDGDCLHGYIPQSVQAKVELDELVALDKQHINRQ 487
Query: 255 SGNLNLQLSTDSLLS--LKMLVKKGFMDRAAANQLAMFLSLPLPRPALLKA--GSGDSYW 310
+G L L DSL L + K +++RA QL M+ LP PA+++A S + W
Sbjct: 488 NGRNLLSLGQDSLTGAYLVNVEKNCYLNRAQIQQLQMYCPFQLPPPAIIQASPSSTEPQW 547
Query: 311 TSIQILQCALPLSFDCT 327
T +Q+ P FD T
Sbjct: 548 TGMQLFGMLFPPGFDYT 564
>K7K551_SOYBN (tr|K7K551) DNA-directed RNA polymerase OS=Glycine max PE=3 SV=1
Length = 1454
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 116/339 (34%), Positives = 171/339 (50%), Gaps = 18/339 (5%)
Query: 72 DASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNM 131
+A N + L +K + + K + S R+V+ GD ++E+GIP IA+ + E VN N
Sbjct: 296 NAFNSSGLRWIKDVVLGKRNDSSFRTVVVGDPDLELSEIGIPCHIAESLQVSEYVNRQNR 355
Query: 132 CFLQKLVDENLCLAYKEGVSTYSLREGSKGHTY----LKPGQIVHRRIMDGDIVFINRPP 187
L + +L K V R+GS H Y L+ G +R + DGD V INRPP
Sbjct: 356 EKLLYCCELHLLEKGKINV----CRKGSIVHLYKKEDLQIGDKFYRPLADGDKVLINRPP 411
Query: 188 TTHKHSLQALVVYIHD-DHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSV 246
+ H+HS+ +L V + V INPL C PL DFDGDC+H + PQS+ A+ E+ EL ++
Sbjct: 412 SIHQHSMISLTVRVLPISSVVCINPLCCSPLRGDFDGDCLHGYIPQSVTARIELNELVAL 471
Query: 247 EKQLLSSHSGNLNLQLSTDSLLSLKMLVKKGFMDRAAANQLAMFLSLPLPR---PALLKA 303
++QL++ SG L LS DSL + +L++ G + Q LS+ R PA++KA
Sbjct: 472 DRQLINGQSGRNLLSLSQDSLTAAYLLMEDGVLLNVYQMQQLQMLSISNKRLIPPAVVKA 531
Query: 304 -GSGDSYWTSIQILQCALPLSFDCTGGRYLIRQSD---ILEFDLSRDVLPAVINEIAASV 359
S S W Q+ LP FD + + SD + + S + + N + V
Sbjct: 532 PSSNSSLWNGKQLFSMLLPYDFDYSFPSDGVVVSDGELVSSSEASGWLRDSDYNVFQSLV 591
Query: 360 FFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDFSIS 398
+G + LNF Q VL E + GFSV L D +S
Sbjct: 592 EHYQG--KTLNFLYAAQKVLCEWLSMTGFSVSLSDLYLS 628
>I1JA29_SOYBN (tr|I1JA29) DNA-directed RNA polymerase OS=Glycine max PE=3 SV=2
Length = 1457
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 116/339 (34%), Positives = 171/339 (50%), Gaps = 18/339 (5%)
Query: 72 DASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNM 131
+A N + L +K + + K + S R+V+ GD ++E+GIP IA+ + E VN N
Sbjct: 296 NAFNSSGLRWIKDVVLGKRNDSSFRTVVVGDPDLELSEIGIPCHIAESLQVSEYVNRQNR 355
Query: 132 CFLQKLVDENLCLAYKEGVSTYSLREGSKGHTY----LKPGQIVHRRIMDGDIVFINRPP 187
L + +L K V R+GS H Y L+ G +R + DGD V INRPP
Sbjct: 356 EKLLYCCELHLLEKGKINV----CRKGSIVHLYKKEDLQIGDKFYRPLADGDKVLINRPP 411
Query: 188 TTHKHSLQALVVYIHD-DHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSV 246
+ H+HS+ +L V + V INPL C PL DFDGDC+H + PQS+ A+ E+ EL ++
Sbjct: 412 SIHQHSMISLTVRVLPISSVVCINPLCCSPLRGDFDGDCLHGYIPQSVTARIELNELVAL 471
Query: 247 EKQLLSSHSGNLNLQLSTDSLLSLKMLVKKGFMDRAAANQLAMFLSLPLPR---PALLKA 303
++QL++ SG L LS DSL + +L++ G + Q LS+ R PA++KA
Sbjct: 472 DRQLINGQSGRNLLSLSQDSLTAAYLLMEDGVLLNVYQMQQLQMLSISNKRLIPPAVVKA 531
Query: 304 -GSGDSYWTSIQILQCALPLSFDCTGGRYLIRQSD---ILEFDLSRDVLPAVINEIAASV 359
S S W Q+ LP FD + + SD + + S + + N + V
Sbjct: 532 PSSNSSLWNGKQLFSMLLPYDFDYSFPSDGVVVSDGELVSSSEASGWLRDSDYNVFQSLV 591
Query: 360 FFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDFSIS 398
+G + LNF Q VL E + GFSV L D +S
Sbjct: 592 EHYQG--KTLNFLYAAQKVLCEWLSMTGFSVSLSDLYLS 628
>B8BED0_ORYSI (tr|B8BED0) DNA-directed RNA polymerase OS=Oryza sativa subsp.
indica GN=OsI_32338 PE=3 SV=1
Length = 1384
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 112/339 (33%), Positives = 170/339 (50%), Gaps = 28/339 (8%)
Query: 72 DASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNM 131
D WL K + +SK S + RS++ GD +NE+GIP ++A + E+V+ +N
Sbjct: 269 DTYGTKWL---KDIILSKRSDNAFRSIMVGDPKINLNEIGIPTDLALNLVVSEQVSFYNF 325
Query: 132 ------CFLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINR 185
C L L E L L + G + +R+ +K L+ G I +R + DGD+V +NR
Sbjct: 326 ETINLKCNLHLLTKEVL-LVRRNGKLIF-VRKANK----LEIGDIAYRLLQDGDLVLVNR 379
Query: 186 PPTTHKHSLQALVVYIHD-DHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELF 244
PP+ H+HSL AL + V INPL C P DFDGDC+H + PQ+L ++ E+ L
Sbjct: 380 PPSVHQHSLIALSAKLLPIQSAVAINPLCCDPFKGDFDGDCLHGYVPQTLQSRVELDGLV 439
Query: 245 SVEKQLLSSHSGNLNLQLSTDSLLSLKMLVKKG-FMDRAAANQLAMFLS--LPLPRPALL 301
S+ Q+L++ G + L+ DSL + L F+ +A QL + S P P P+++
Sbjct: 440 SLSGQMLNAQDGRSLVSLTHDSLAAAHQLTSADVFLQKAEFQQLQLLCSSISPTPEPSVV 499
Query: 302 KAGS-GDSYWTSIQILQCALP----LSFDCTGGRYLIRQSDILEFDLSRDVLPAVINEIA 356
K+ + S WT Q+ LP +SFD + I+ S++L L + +
Sbjct: 500 KSANFQGSLWTGKQLFGMLLPSGMNISFD---QKLHIKDSEVLTCSSGSFWLQNNTSSV- 555
Query: 357 ASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDF 395
SV F + +AL F Q VL E + G SV L D
Sbjct: 556 FSVMFKEYGSKALEFLSSTQDVLCEFLTMKGLSVSLSDL 594
>F6HUI3_VITVI (tr|F6HUI3) DNA-directed RNA polymerase OS=Vitis vinifera
GN=VIT_02s0025g04530 PE=3 SV=1
Length = 1433
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 120/346 (34%), Positives = 178/346 (51%), Gaps = 18/346 (5%)
Query: 65 GVNKELS--DASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITF 122
G ELS AS + L +K + + K + S R ++ GD R++E+GIP IA+ +
Sbjct: 267 GTANELSCHSASKMSGLKWIKEVLLGKRTNHSFRMIVVGDPKLRLSEIGIPCHIAEELLI 326
Query: 123 EERVNLHNMCFLQKLVDENLCLAYKEGVSTYSLREGS----KGHTYLKPGQIVHRRIMDG 178
E +N N + V L E TY R+G+ + + G I++R + DG
Sbjct: 327 SEHLNSWNW----EKVTNGCNLRLLEKGQTYVRRKGTLAPVRRMNDFQAGDIIYRPLTDG 382
Query: 179 DIVFINRPPTTHKHSLQALVVYIHD-DHTVKINPLICGPLGADFDGDCVHLFYPQSLAAK 237
DIV INRPP+ H+HS+ AL V + + V INPL C P DFDGDC+H + PQS+ ++
Sbjct: 383 DIVLINRPPSIHQHSVIALSVKVLPLNSVVSINPLCCSPFRGDFDGDCLHGYIPQSVDSR 442
Query: 238 AEVVELFSVEKQLLSSHSGNLNLQLSTDSLLSLKMLVKKG-FMDRAAANQLAMFLSLPLP 296
E+ EL ++ +QL++ SG L LS DSL + ++++ G ++ QL MF L
Sbjct: 443 VELSELVALNRQLINRQSGRNLLSLSQDSLSAAHLVMEDGVLLNLFQMQQLEMFCPYQLQ 502
Query: 297 RPALLKAGSGDS-YWTSIQILQCALPLSFDCTGGRYLIRQSDILEFDLSRDVLPAVINEI 355
PA++KA D+ WT Q+ LP F+ +R SD E S D A + +I
Sbjct: 503 SPAIIKAPLLDTQVWTGKQLFSMLLPPGFNYVFPLNGVRISD-GELISSSDG-SAWLRDI 560
Query: 356 AASVF--FGKGPQ-EALNFFDVLQPVLMESIFSNGFSVGLHDFSIS 398
++F K Q +AL+F Q VL E + G SV L D +S
Sbjct: 561 DGNLFSSLVKDCQGKALDFLYAAQEVLCEWLSMRGLSVSLSDIYLS 606
>M4EFP9_BRARP (tr|M4EFP9) DNA-directed RNA polymerase OS=Brassica rapa subsp.
pekinensis GN=Bra027611 PE=3 SV=1
Length = 1443
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 94/268 (35%), Positives = 142/268 (52%), Gaps = 21/268 (7%)
Query: 71 SDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHN 130
SD L MK + + K S + R+V+ GD ++NE+GIP IA+R+ E +N N
Sbjct: 287 SDTPELRGLRFMKDVLLGKRSDHTFRTVVVGDPSLKLNEIGIPRSIAERLQVSENLNDWN 346
Query: 131 M------CFLQKLVDENLCLAYKEG--VSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVF 182
CF KL+++ + G V ++ + G ++L R + DGD V
Sbjct: 347 RDRLVTSCF-HKLLEKGETHVRRGGRLVGIRAIDDLQTGDSFL-------RTLKDGDTVL 398
Query: 183 INRPPTTHKHSLQALVVYI-HDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVV 241
+NRPP+ H+HSL A+ V + V +NP+ C P DFDGDC+H + PQS+ AKAE+
Sbjct: 399 MNRPPSIHQHSLIAMSVKVLPTTSVVSLNPICCLPFRGDFDGDCLHGYVPQSIQAKAELE 458
Query: 242 ELFSVEKQLLSSHSGNLNLQLSTDSLLS--LKMLVKKGFMDRAAANQLAMFLSLPLPRPA 299
EL +++KQL++ +G L L DSL + L + F++RA QL M+ LPRPA
Sbjct: 459 ELVALDKQLVNRQNGRNLLSLGQDSLTAAYLVNVETNCFLNRAEMQQLQMYCPFELPRPA 518
Query: 300 LLKAGSGDS--YWTSIQILQCALPLSFD 325
+++ S S WT Q+ P F+
Sbjct: 519 IIRGSSTSSEPQWTGKQLFGMLFPPGFE 546
>A5BZZ3_VITVI (tr|A5BZZ3) DNA-directed RNA polymerase OS=Vitis vinifera
GN=VITISV_011232 PE=3 SV=1
Length = 1393
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 116/336 (34%), Positives = 174/336 (51%), Gaps = 16/336 (4%)
Query: 73 ASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMC 132
AS + L +K + + K + S R ++ GD R++E+GIP IA+ + E +N N
Sbjct: 304 ASKMSGLKWIKEVLLGKRTNHSFRMIVVGDPKLRLSEIGIPCHIAEELLISEHLNSWNW- 362
Query: 133 FLQKLVDENLCLAYKEGVSTYSLREGS----KGHTYLKPGQIVHRRIMDGDIVFINRPPT 188
+ V L E TY R+G+ + + G I++R + DGDIV INRPP+
Sbjct: 363 ---EKVTNGCNLRLLEKGQTYVRRKGTLAPVRRMNDFQAGDIIYRPLTDGDIVLINRPPS 419
Query: 189 THKHSLQALVVYIHD-DHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVE 247
H+HS+ AL V + + V INPL C P DFDGDC+H + PQS+ ++ E+ EL ++
Sbjct: 420 IHQHSVIALSVKVLPLNSVVSINPLCCSPFRGDFDGDCLHGYIPQSVDSRVELSELVALN 479
Query: 248 KQLLSSHSGNLNLQLSTDSLLSLKMLVKKG-FMDRAAANQLAMFLSLPLPRPALLKAGSG 306
+QL++ SG L LS DSL + ++++ G ++ QL MF L PA++KA
Sbjct: 480 RQLINRQSGRNLLSLSQDSLSAAHLVMEDGVLLNLFQMQQLEMFCPYQLQSPAIIKAPLL 539
Query: 307 DS-YWTSIQILQCALPLSFDCTGGRYLIRQSDILEFDLSRDVLPAVINEIAASVF--FGK 363
D+ WT Q+ LP F+ +R SD E S D A + +I ++F K
Sbjct: 540 DTQVWTGKQLFSMLLPPGFNYVFPLNGVRISDG-ELISSSDG-SAWLRDIDGNLFSSLVK 597
Query: 364 GPQ-EALNFFDVLQPVLMESIFSNGFSVGLHDFSIS 398
Q +AL+F Q VL E + G SV L D +S
Sbjct: 598 DCQGKALDFLYAAQEVLCEWLSMRGLSVSLSDIYLS 633
>M8C5N9_AEGTA (tr|M8C5N9) DNA-directed RNA polymerase III subunit RPC1
OS=Aegilops tauschii GN=F775_07056 PE=4 SV=1
Length = 1334
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 111/341 (32%), Positives = 163/341 (47%), Gaps = 48/341 (14%)
Query: 71 SDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHN 130
+D WL K +SK S + R + GD R++E+GIP+++A + E VN +N
Sbjct: 276 TDTHGMKWL---KDAILSKRSDNAFRGTMVGDPKIRLHEIGIPVDLASNLVVSEHVNSYN 332
Query: 131 M--------CFLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVF 182
C+L L +E L + K T +R+ ++ L G VHR + DGD++
Sbjct: 333 FDNINLKCNCYL--LANEKLVI--KRSGKTIIVRKPNQ----LVIGDTVHRLLQDGDLIL 384
Query: 183 INRPPTTHKHSLQALVVYIHDDHTV-KINPLICGPLGADFDGDCVHLFYPQSLAAKAEVV 241
INRPP+ H+HSL L + +V INPL C PL DFDGDC+H + PQS+ ++ E+
Sbjct: 385 INRPPSIHQHSLIGLSAKLLPVQSVLSINPLCCAPLAGDFDGDCLHGYVPQSIQSRVELG 444
Query: 242 ELFSVEKQLLSSHSGNLNLQLSTDSLLSLKMLV-KKGFMDRAAANQLAMFLSLPL---PR 297
EL S+ QLL++ G + L+ DSL + +L + + + Q M L PL P
Sbjct: 445 ELVSLSHQLLNAQDGRSLVSLTHDSLAAAYLLTSSEVLLKKTEVQQFQMLLCHPLSPTPG 504
Query: 298 PALLKA-GSGDSYWTSIQILQCALPLSFDCTGGRYLIRQSDILEFDLSRDVLPAVINEIA 356
PA++K+ S WT Q+ LP D+S + P N I+
Sbjct: 505 PAIMKSIHSHGPLWTGKQLFSMLLP-------------------SDMSFSIEPK--NSIS 543
Query: 357 A--SVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDF 395
SV F + +AL Q VL E + G SV L D
Sbjct: 544 GLFSVMFKQYGDKALELLSSAQDVLCEFLTMRGLSVSLSDI 584
>K2NKG9_TRYCR (tr|K2NKG9) DNA-directed RNA polymerase OS=Trypanosoma cruzi
marinkellei GN=MOQ_001563 PE=3 SV=1
Length = 1733
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 100/337 (29%), Positives = 163/337 (48%), Gaps = 21/337 (6%)
Query: 76 KAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQ 135
K +++ + K FS+R+VITGD ++EVG+P IA +TF ERVN N L
Sbjct: 321 KGKYGRLRGNLMGKRVDFSARTVITGDPNIDVDEVGVPFSIAMTLTFPERVNAINKKRLT 380
Query: 136 KLVDENLC-----LAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTH 190
+ V + + + G +T + L G +V R +++GD+V NR PT H
Sbjct: 381 EFVRRPVYPSANYIHHPNGTTTKLALRRDRSKVTLNIGDVVERHVINGDVVLFNRQPTLH 440
Query: 191 KHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQL 250
+ S+ V + + +T ++N P ADFDGD ++L PQSL KAE++E+ V K
Sbjct: 441 RMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNF 500
Query: 251 LSSHSGNLNLQLSTDSLL-SLKMLVKKGFMDRAAANQLAMFLSL-PLPRPALLKAGSGDS 308
+S + + + DSLL S ++ K F+D+ +A++L L LP PA+LK
Sbjct: 501 VSPNKSAPCMGIVQDSLLGSYRLTDKDTFLDKYFVQSVALWLDLWQLPVPAVLKP---RP 557
Query: 309 YWTSIQILQCALP-----------LSFDCTGGRYLIRQSDILEFDLSRDVLPAVINEIAA 357
WT Q+ LP F +IR+ +L +++ ++ A +
Sbjct: 558 LWTGKQVFSLILPEVNHPATPQERPPFPHNDSSIMIRRGQLLCGPITKGIVGAAPGSLIH 617
Query: 358 SVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
+F +G E F + +Q + + + GFSVG+ D
Sbjct: 618 VIFNERGSDEVARFINGVQRITTFFLINFGFSVGVQD 654
>M7ZUZ1_TRIUA (tr|M7ZUZ1) DNA-directed RNA polymerase D subunit 1 OS=Triticum
urartu GN=TRIUR3_10627 PE=4 SV=1
Length = 1402
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 110/341 (32%), Positives = 163/341 (47%), Gaps = 48/341 (14%)
Query: 71 SDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHN 130
+D WL K +SK S + R + GD R++E+GIP+++A + E VN +N
Sbjct: 312 TDTHGMKWL---KDAILSKRSDNAFRGTMVGDPKIRLHEIGIPVDLASNLLVSEHVNSYN 368
Query: 131 M--------CFLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVF 182
C+L L +E L + K T +R+ ++ L G VHR + DGD++
Sbjct: 369 FDSINSKCNCYL--LANEKLVI--KRSGKTIIVRKPNQ----LVIGDTVHRLLQDGDLIL 420
Query: 183 INRPPTTHKHSLQALVVYIHDDHTV-KINPLICGPLGADFDGDCVHLFYPQSLAAKAEVV 241
INRPP+ H+HS+ L + +V INPL C PL DFDGDC+H + PQS+ ++ E+
Sbjct: 421 INRPPSIHQHSVIGLSAKLLPVQSVLSINPLCCAPLAGDFDGDCLHGYVPQSIQSRVELE 480
Query: 242 ELFSVEKQLLSSHSGNLNLQLSTDSLLSLKMLV-KKGFMDRAAANQLAMFLSLPL---PR 297
EL S+ QLL++ G + L+ DSL + +L + + + Q M L PL P
Sbjct: 481 ELVSLSHQLLNAQDGRSLVSLTHDSLAAAYLLTSSEVLLKKTEVQQFQMLLCHPLSPTPG 540
Query: 298 PALLKA-GSGDSYWTSIQILQCALPLSFDCTGGRYLIRQSDILEFDLSRDVLPAVINEIA 356
PA++K+ S WT Q+ LP D+S + P N I+
Sbjct: 541 PAIMKSIHSHGPLWTGKQLFSMLLP-------------------SDMSFSIEPK--NSIS 579
Query: 357 A--SVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDF 395
SV F + +AL Q VL E + G SV L D
Sbjct: 580 GLFSVMFKQYGDKALELLSSAQDVLCEFLTMRGLSVSLSDI 620
>Q2PYS4_SPIPN (tr|Q2PYS4) DNA-directed RNA polymerase (Fragment) OS=Spizellomyces
punctatus GN=RPB1 PE=3 SV=1
Length = 792
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 109/369 (29%), Positives = 172/369 (46%), Gaps = 50/369 (13%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDE 140
+++ + K FS+R+VITGD I+EVG+P IA+ +TF E V +N+ LQ++V +
Sbjct: 264 RLRGNLMGKRVDFSARTVITGDPNLSIDEVGVPRSIARNLTFPETVTPYNIHRLQEMVRK 323
Query: 141 NLCLAYKEGVSTYSLREGSK----------GHTYLKPGQIVHRRIMDGDIVFINRPPTTH 190
+ G + Y +++ + G +L+ G V R +MD DIV NR P+ H
Sbjct: 324 G---PLEHGGAKYVIKDDGQRIDLRYNRRGGDIHLQNGYRVERHLMDNDIVIFNRQPSLH 380
Query: 191 KHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQL 250
K S+ V + T + N + P ADFDGD ++L PQS KAE++EL V KQ+
Sbjct: 381 KMSMMGHRVKVMPYSTFRXNLSVTSPYNADFDGDEMNLHVPQSYETKAELMELCMVPKQI 440
Query: 251 LSSHSGNLNLQLSTDSLLSLKMLVKKG-FMDRAAANQLAMFL---SLPLPRPALLKAGSG 306
+S + + D+L ++ K+ F+ R L M++ +P+PA+LK
Sbjct: 441 VSPQKNAPVMGIVQDTLCGIRKFTKRDTFLRRDFVMNLLMWVPDWDGTVPQPAILKP--- 497
Query: 307 DSYWTSIQILQCALPLSFDCTG------------------GRYLIRQSDILEFDLSRDVL 348
WT QI+ +P + TG + LI ++L L + +
Sbjct: 498 VPLWTGKQIMSLVIPPKINVTGYHSAFDEQTDKDDGSSSDCKVLIENGELLTGILCKKTV 557
Query: 349 PAVINEIAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDF------------S 396
+ N I GP+ A FF+ Q V+ + NGFS+G+ D +
Sbjct: 558 GSSANGIIHVTMNEHGPEAAKAFFNGTQLVVNHWLLQNGFSIGIGDTIADRPTSDQITST 617
Query: 397 ISGAVKRVT 405
IS A K VT
Sbjct: 618 ISNAKKEVT 626
>Q01JX0_ORYSA (tr|Q01JX0) DNA-directed RNA polymerase OS=Oryza sativa
GN=OSIGBa0147H17.3 PE=3 SV=1
Length = 1407
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 111/342 (32%), Positives = 174/342 (50%), Gaps = 21/342 (6%)
Query: 67 NKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERV 126
+ E S +++ + +K + +SK S + RS++ GD +NE+GIP+ +A + E+V
Sbjct: 284 DDESSASTDTYGIKWLKDIILSKRSDNAFRSIMVGDPKINLNEIGIPMGLALNLVVSEQV 343
Query: 127 NLHNM------CFLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDI 180
+ +N C L L E L L + G + +R+ ++ L+ G I +R + DGD+
Sbjct: 344 SSYNFETINLKCNLHLLTKEVL-LVRRNGNLIF-VRKANQ----LEIGDIAYRLLQDGDL 397
Query: 181 VFINRPPTTHKHSLQALVVYIHDDHT-VKINPLICGPLGADFDGDCVHLFYPQSLAAKAE 239
V +NRPP+ H+HSL AL + + V INPL C P DFDGDC+H + PQ L ++ E
Sbjct: 398 VLVNRPPSVHQHSLIALSAKLLSTQSAVSINPLCCDPFKGDFDGDCLHGYIPQCLQSRIE 457
Query: 240 VVELFSVEKQLLSSHSGNLNLQLSTDSLLSLKMLVKKG-FMDRAAANQLAMF---LSLPL 295
+ EL S+ QLL+ G + L+ DSL + L F+++A QL M +SL
Sbjct: 458 LEELVSLSGQLLNQQDGRSLVSLTHDSLAAAHQLTNADVFLEKAEFQQLQMLSSSISLT- 516
Query: 296 PRPALLKA-GSGDSYWTSIQILQCALPLSFDCTGGRYL-IRQSDILEFDLSRDVLPAVIN 353
P P++ K+ S WT Q+ LP + + + L I+ S++L L +
Sbjct: 517 PMPSVFKSTNSQGPLWTGKQLFGMLLPYGMNISFDQKLHIKDSEVLTCSSGSFWLQNNTS 576
Query: 354 EIAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDF 395
+ SV F + +AL F Q VL E + G SV L D
Sbjct: 577 SL-FSVMFKEYGCKALEFLSSTQDVLCEFLTMWGLSVSLSDL 617
>B8AT49_ORYSI (tr|B8AT49) DNA-directed RNA polymerase OS=Oryza sativa subsp.
indica GN=OsI_17044 PE=3 SV=1
Length = 1598
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 120/404 (29%), Positives = 194/404 (48%), Gaps = 36/404 (8%)
Query: 5 PSMTFLRKLLRKVEIIRSSRSGEPNFESHEVEANDLQSVVDQYLQIRGCAKPARDIETHF 64
P +K+L ++ + +P + + + +VD Y +K + D
Sbjct: 210 PIFNVTKKILSPYQVFHMLKKLDPELINQDDRTKAYKRMVDLY------SKKSDD----- 258
Query: 65 GVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEE 124
E S +++ + +K + +SK S + RS++ GD +NE+GIP+ +A + E
Sbjct: 259 ----ESSASTDTYGIKWLKDIILSKRSDNAFRSIMVGDPKINLNEIGIPMGLALNLVVSE 314
Query: 125 RVNLHNM------CFLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDG 178
+V+ +N C L L E L L + G + +R+ ++ L+ G I +R + DG
Sbjct: 315 QVSSYNFETINLKCNLHLLTKEVL-LVRRNGNLIF-VRKANQ----LEIGDIAYRLLQDG 368
Query: 179 DIVFINRPPTTHKHSLQALVVYIHDDHT-VKINPLICGPLGADFDGDCVHLFYPQSLAAK 237
D+V +NRPP+ H+HSL AL + + V INPL C P DFDGDC+H + PQ L ++
Sbjct: 369 DLVLVNRPPSVHQHSLIALSAKLLSTQSAVSINPLCCDPFKGDFDGDCLHGYIPQCLQSR 428
Query: 238 AEVVELFSVEKQLLSSHSGNLNLQLSTDSLLSLKMLVKKG-FMDRAAANQLAMF---LSL 293
E+ EL S+ QLL+ G + L+ DSL + L F+++A QL M +SL
Sbjct: 429 IELEELVSLSGQLLNQQDGRSLVSLTHDSLAAAHQLTNADVFLEKAEFQQLQMLSSSISL 488
Query: 294 PLPRPALLKA-GSGDSYWTSIQILQCALPLSFDCTGGRYL-IRQSDILEFDLSRDVLPAV 351
P P++ K+ S WT Q+ LP + + + L I+ S++L L
Sbjct: 489 T-PMPSVFKSTNSQGPLWTGKQLFGMLLPYGMNISFDQKLHIKDSEVLTCSSGSFWLQNN 547
Query: 352 INEIAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDF 395
+ + SV F + +AL F Q VL E + G SV L D
Sbjct: 548 TSSL-FSVMFKEYGCKALEFLSSTQDVLCEFLTMWGLSVSLSDL 590
>G0ULQ7_TRYCI (tr|G0ULQ7) DNA-directed RNA polymerase OS=Trypanosoma congolense
(strain IL3000) GN=TCIL3000_4_4270 PE=3 SV=1
Length = 1756
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 105/339 (30%), Positives = 167/339 (49%), Gaps = 25/339 (7%)
Query: 76 KAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQ 135
K +++ + K FS+R+VITGD ++EVG+P +A +TF ERVN N L
Sbjct: 338 KGKYGRLRGNLMGKRVDFSARTVITGDPNIDVDEVGVPFSVAMTLTFPERVNTVNKKRLT 397
Query: 136 KLVDENLC-----LAYKEGVST--YSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPT 188
+ V + + + G T LR+ SK L G IV R +++GD+V NR PT
Sbjct: 398 EFVRREVYPSANYIHHPNGTITKLALLRDRSK--VTLNIGDIVERHVINGDVVLFNRQPT 455
Query: 189 THKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEK 248
H+ S+ V + + +T ++N P ADFDGD ++L PQSL KAE++E+ V K
Sbjct: 456 LHRMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPK 515
Query: 249 QLLSSHSGNLNLQLSTDSLL-SLKMLVKKGFMDRAAANQLAMFLSL-PLPRPALLKAGSG 306
+S + + + DSLL S ++ K F+D+ +A++L L LP PA+LK
Sbjct: 516 NFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFLDKYFVQSVALWLDLWQLPIPAVLKP--- 572
Query: 307 DSYWTSIQILQCALP-----------LSFDCTGGRYLIRQSDILEFDLSRDVLPAVINEI 355
WT Q+ LP F +IR+ ++L +++ ++ A +
Sbjct: 573 RPLWTGKQVFSLILPEVNHPTTPHDKPPFPHNDSSVMIRRGELLCGPITKGIVGAAPGSL 632
Query: 356 AASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
+F +G E F + +Q V + + GFSVG+ D
Sbjct: 633 IHVIFNEQGSDEVARFINGVQRVTTFFLLNFGFSVGVQD 671
>Q8ISB0_TRYCR (tr|Q8ISB0) DNA-directed RNA polymerase OS=Trypanosoma cruzi
GN=RPIIls PE=3 SV=1
Length = 1731
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 100/337 (29%), Positives = 163/337 (48%), Gaps = 21/337 (6%)
Query: 76 KAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQ 135
K +++ + K FS+R+VITGD ++EVG+P IA +TF ERV+ N L
Sbjct: 321 KGKYGRLRGNLMGKRVDFSARTVITGDPNIDVDEVGVPFSIAMTLTFPERVSAVNKKRLT 380
Query: 136 KLVDENLC-----LAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTH 190
+ V + + + G ST + L G +V R +++GD+V NR PT H
Sbjct: 381 EFVRRPVYPSAFYIHHPNGTSTKLALRRDRSKVTLNIGDVVERHVINGDVVLFNRQPTLH 440
Query: 191 KHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQL 250
+ S+ V + + +T ++N P ADFDGD ++L PQSL KAE++E+ V K
Sbjct: 441 RMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNF 500
Query: 251 LSSHSGNLNLQLSTDSLL-SLKMLVKKGFMDRAAANQLAMFLSL-PLPRPALLKAGSGDS 308
+S + + + DSLL S ++ K F+D+ +A++L L LP PA+LK
Sbjct: 501 VSPNKSAPCMGIVQDSLLGSYRLTDKDTFLDKYFVQSVALWLDLWQLPVPAVLKP---RP 557
Query: 309 YWTSIQILQCALP-----------LSFDCTGGRYLIRQSDILEFDLSRDVLPAVINEIAA 357
WT Q+ LP F +IR+ +L +++ ++ A +
Sbjct: 558 LWTGKQVFSLILPEVNHPATPQERPPFPHNDSSIMIRRGQLLCGPITKGIVGAAPGSLIH 617
Query: 358 SVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
+F +G E F + +Q + + + GFSVG+ D
Sbjct: 618 VIFNERGSDEVARFINGVQRITTFFLINFGFSVGVQD 654
>Q5I2R7_9HOMO (tr|Q5I2R7) DNA-directed RNA polymerase (Fragment)
OS=Hygrophoropsis aurantiaca GN=RPB1 PE=3 SV=2
Length = 991
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 98/342 (28%), Positives = 170/342 (49%), Gaps = 28/342 (8%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDE 140
+++ + K FS+R+VITGD +++EVG+P IA +T+ ERV +N+ +LQ+LV
Sbjct: 253 RLRGNLMGKRVDFSARTVITGDPNLQLDEVGVPRSIAMNLTYPERVTPYNIAYLQELV-R 311
Query: 141 NLCLAY-------KEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHS 193
N AY ++ LR + +L+ G IV R + DGD V NR P+ HK S
Sbjct: 312 NGPTAYPGARYVVRDTGERIDLRYNKRADAFLQYGWIVERHLKDGDFVLFNRQPSLHKMS 371
Query: 194 LQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSS 253
+ + V + T ++N + P ADFDGD +++ PQS +AE+ ++ V +Q++S
Sbjct: 372 MMSHRVKLMPYSTFRLNLSVTPPYNADFDGDEMNMHIPQSEETRAELSQIAWVPRQIISP 431
Query: 254 HSGNLNLQLSTDSLLSL-KMLVKKGFMDRAAANQLAMFL---SLPLPRPALLKAGSGDSY 309
H+ + + D+L + K ++ F+D + +++ +P PA++K
Sbjct: 432 HANKPVMGIVQDTLCGIRKFTLRDTFLDWNQVQNILLWVPDWDGAVPTPAIIKP---KPL 488
Query: 310 WTSIQILQCALPLSFDCTGGR------------YLIRQSDILEFDLSRDVLPAVINEIAA 357
WT QIL +P + +I +I+ + + + A +
Sbjct: 489 WTGKQILSLVIPRGINIHRAPDPKSSNPVFDDGMMIENGEIVFGIVEKKTVGASQGGLIH 548
Query: 358 SVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDFSISG 399
VF KGP+ + F +Q V+ +F NGFS+G+ D +I+G
Sbjct: 549 VVFREKGPEATRDLFTGIQMVVNFWLFHNGFSIGIGD-AIAG 589
>E9B260_LEIMU (tr|E9B260) DNA-directed RNA polymerase OS=Leishmania mexicana
(strain MHOM/GT/2001/U1103) GN=LMXM_30_2610 PE=3 SV=1
Length = 1662
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 108/361 (29%), Positives = 176/361 (48%), Gaps = 30/361 (8%)
Query: 55 KPARDIETHFGVNKELSDASN--KAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGI 112
KPA+ G K+L + K +++ + K FS+R+VITGD ++EVG+
Sbjct: 296 KPAK-----VGDTKKLKSLTERLKGKYGRLRGNLMGKRVDFSARTVITGDPNIDVDEVGV 350
Query: 113 PLEIAQRITFEERVNLHN----MCFLQKLV--DENLCLAYKEGVSTYSLREGSKGHTYLK 166
P +A +TF ERVN+ N F+Q+ V N + V+ +L + + +L
Sbjct: 351 PFSVAMTLTFPERVNVINRKRLTEFVQRTVYPSANYIIRPNGNVTKLALVK-DRSAVHLD 409
Query: 167 PGQIVHRRIMDGDIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCV 226
G +V R ++DGD+V NR PT H+ S+ V + + +T ++N P ADFDGD +
Sbjct: 410 VGDVVERHVIDGDVVLFNRQPTLHRMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEM 469
Query: 227 HLFYPQSLAAKAEVVELFSVEKQLLSSHSGNLNLQLSTDSLL-SLKMLVKKGFMDRAAAN 285
+L PQSL KAE++E+ V K +S + + + DSLL S ++ K F+D+
Sbjct: 470 NLHVPQSLLTKAELIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFVDKYFIQ 529
Query: 286 QLAMFLSL-PLPRPALLKAGSGDSYWTSIQILQCALP-----------LSFDCTGGRYLI 333
+A++L L LP PA+LK WT QI LP F + +I
Sbjct: 530 SVALWLDLWELPIPAILKP---RPLWTGKQIFSLILPEVNHPASPYDKPPFPHNDKKIMI 586
Query: 334 RQSDILEFDLSRDVLPAVINEIAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLH 393
++ +L +++ V+ A + +F +G E F + +Q + + FSVG+
Sbjct: 587 QRGQLLVGAITKGVVGAAPGSLIHVIFNERGSDEVAKFINGVQRITTYFNYCFAFSVGVQ 646
Query: 394 D 394
D
Sbjct: 647 D 647
>B9RC12_RICCO (tr|B9RC12) DNA-directed RNA polymerase OS=Ricinus communis
GN=RCOM_1683300 PE=3 SV=1
Length = 1475
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 110/331 (33%), Positives = 164/331 (49%), Gaps = 25/331 (7%)
Query: 79 LDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLV 138
L +K + + K + S R V+ GD + +E+GIP IA+R+ E + N KL
Sbjct: 313 LRWIKDVVLGKRNDNSFRMVVVGDPNIKFSEIGIPCPIAERLQISEHLTTWNW---DKL- 368
Query: 139 DENLCLAYK--EGVSTYSLREGS----KGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKH 192
N C + E + REG + L+ G I++R + DGD V INRPP+ H+H
Sbjct: 369 --NTCCEVRLLEKGDMHVRREGKLVRVRRTKELRIGDIIYRPLNDGDTVLINRPPSIHQH 426
Query: 193 SLQALVVYIHDDHTV-KINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLL 251
SL AL V + +V INPLIC P DFDGDC+H + PQS+ + E+ EL +++KQL+
Sbjct: 427 SLIALSVKVLPATSVLAINPLICAPFRGDFDGDCLHGYVPQSVDTRVELRELVALDKQLI 486
Query: 252 SSHSGNLNLQLSTDSLLSLKMLVKKGF-MDRAAANQLAMFLSLPLPRPALLKAGS-GDSY 309
+ +G L S DSL++ ++++ G + QL MF L PA+ KA S
Sbjct: 487 NVQNGRNLLSFSQDSLVAAHLVMEDGVLLSLQQMQQLQMFCPHQLFSPAVRKAPSLNGCA 546
Query: 310 WTSIQILQCALPLSFD--CTGGRYLIRQSDILEFDLS---RDVLPAVINEIAASVFFGKG 364
WT Q++ LP FD C IR +++ + S RD + + +
Sbjct: 547 WTGKQLISMLLPRGFDHECPSSDVYIRDGELISSEGSFWLRDTDGNLFQSL-----IKQC 601
Query: 365 PQEALNFFDVLQPVLMESIFSNGFSVGLHDF 395
+ L+F + Q VL E + G SV L D
Sbjct: 602 QDQVLDFLYIAQEVLCEWLSMRGLSVSLSDL 632
>D8PLU0_SCHCM (tr|D8PLU0) DNA-directed RNA polymerase OS=Schizophyllum commune
(strain H4-8 / FGSC 9210) GN=SCHCODRAFT_81059 PE=3 SV=1
Length = 1750
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 103/349 (29%), Positives = 167/349 (47%), Gaps = 42/349 (12%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDE 140
+++ + K FS+R+VITGD +++VG+P IA +TF ERV +N+ +LQ LV
Sbjct: 339 RLRGNLMGKRVDFSARTVITGDPNLELDQVGVPRSIAMNLTFPERVTPYNIDYLQTLV-- 396
Query: 141 NLCLAYKEGVSTY--------------SLREGSKGHTYLKPGQIVHRRIMDGDIVFINRP 186
+ G +TY LR + +L+ G IV R + DGD V NR
Sbjct: 397 ------RNGPTTYPGARYVVRDTGERIDLRYNKRADAFLQFGWIVERHLKDGDYVLFNRQ 450
Query: 187 PTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSV 246
P+ HK S+ + V + T ++N + P ADFDGD +++ PQS +AE+ ++ V
Sbjct: 451 PSLHKMSMMSHRVKLMPYSTFRLNLSVTPPYNADFDGDEMNMHIPQSEETRAELSQIAWV 510
Query: 247 EKQLLSSHSGNLNLQLSTDSLLSL-KMLVKKGFMDRAAANQLAMFLSL---PLPRPALLK 302
+Q+++ S + + D+L + K ++ FMD + +++ +P PA+LK
Sbjct: 511 PRQIVTPQSNKPVMGIVQDTLCGIRKFTLRDCFMDWNQVQNILLWVPSWDGSVPIPAILK 570
Query: 303 AGSGDSYWTSIQILQCALPLSFDCT-----GGR-------YLIRQSDILEFDLSRDVLPA 350
WT QIL +P + GG I DI+ + + + A
Sbjct: 571 P---KPLWTGKQILSMVIPRGINIARKSEKGGSAPPADDGMFIENGDIMYGVVDKKTVGA 627
Query: 351 VINEIAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDFSISG 399
+ VF KGP+ F LQ V+ +F NGFS+G+ D +I+G
Sbjct: 628 SQGGLIHVVFREKGPEATRTLFTGLQQVVNYWLFHNGFSIGIGD-TIAG 675
>A4I766_LEIIN (tr|A4I766) DNA-directed RNA polymerase OS=Leishmania infantum
GN=RPOIILS PE=3 SV=1
Length = 1662
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 101/338 (29%), Positives = 165/338 (48%), Gaps = 23/338 (6%)
Query: 76 KAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQ 135
K +++ + K FS+R+VITGD ++EVG+P +A +TF ERVN+ N L
Sbjct: 314 KGKYGRLRGNLMGKRVDFSARTVITGDPNIDVDEVGVPFSVAMTLTFPERVNVINKKRLT 373
Query: 136 KLVDE------NLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTT 189
+ V N + V+ +L + + +L G +V R ++DGD+V NR PT
Sbjct: 374 EFVQRTTYPSANYIIRPNGNVTKLALVK-DRNAVHLDVGDVVERHVIDGDVVLFNRQPTL 432
Query: 190 HKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQ 249
H+ S+ V + + +T ++N P ADFDGD ++L PQSL KAE++E+ V K
Sbjct: 433 HRMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKN 492
Query: 250 LLSSHSGNLNLQLSTDSLL-SLKMLVKKGFMDRAAANQLAMFLSL-PLPRPALLKAGSGD 307
+S + + + DSLL S ++ K F+D+ +A++L L LP PA+LK
Sbjct: 493 FVSPNKSAPCMGIVQDSLLGSYRLTDKDTFVDKYFIQSVALWLDLWELPIPAILKP---R 549
Query: 308 SYWTSIQILQCALP-----------LSFDCTGGRYLIRQSDILEFDLSRDVLPAVINEIA 356
WT QI LP F + +I++ +L +++ V+ A +
Sbjct: 550 PLWTGKQIFSLILPEVNHPASPYDKPPFPHNDKKIMIQRGQLLVGAITKGVVGAAPGSLI 609
Query: 357 ASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
+F +G E F + +Q + + FSVG+ D
Sbjct: 610 HVIFNERGSDEVAKFINGVQRITTYFNYCFAFSVGVQD 647
>A4HJP9_LEIBR (tr|A4HJP9) DNA-directed RNA polymerase OS=Leishmania braziliensis
GN=LBRM_31_2950 PE=3 SV=1
Length = 1662
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 103/338 (30%), Positives = 166/338 (49%), Gaps = 23/338 (6%)
Query: 76 KAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHN----M 131
K +++ + K FS+R+VITGD ++EVG+P +A +TF ERVN+ N
Sbjct: 314 KGKYGRLRGNLMGKRVDFSARTVITGDPNIDVDEVGVPFSVAMTLTFPERVNVINKKRLT 373
Query: 132 CFLQKLV--DENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTT 189
F+Q++ N + V+ +L + + L G +V R I+DGD+V NR PT
Sbjct: 374 DFVQRVTYPSANYVIRPNGNVTKLALVK-DRSAVNLDVGDVVERHIIDGDVVLFNRQPTL 432
Query: 190 HKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQ 249
H+ S+ V + + +T ++N P ADFDGD ++L PQSL KAE++E+ V K
Sbjct: 433 HRMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKN 492
Query: 250 LLSSHSGNLNLQLSTDSLL-SLKMLVKKGFMDRAAANQLAMFLSL-PLPRPALLKAGSGD 307
+S + + + DSLL S ++ K F+D+ +A++L L LP PA+LK
Sbjct: 493 FVSPNKSAPCMGIVQDSLLGSYRLTDKDTFVDKYFIQSVALWLDLWELPIPAILKP---R 549
Query: 308 SYWTSIQILQCALP-----------LSFDCTGGRYLIRQSDILEFDLSRDVLPAVINEIA 356
WT QI LP F + +I++ +L +++ V+ A +
Sbjct: 550 PLWTGKQIFSLILPEVNHPASPYDKPPFPHNDKKIMIQRGQLLVGSITKGVVGAAPGSLI 609
Query: 357 ASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
+F +G E F + +Q V + FSVG+ D
Sbjct: 610 HVIFNERGSDEVAKFINGVQRVTTYFNYCFAFSVGVQD 647
>B9FC30_ORYSJ (tr|B9FC30) DNA-directed RNA polymerase OS=Oryza sativa subsp.
japonica GN=OsJ_15844 PE=3 SV=1
Length = 1623
Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 111/338 (32%), Positives = 169/338 (50%), Gaps = 24/338 (7%)
Query: 71 SDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHN 130
+D WL K + +SK S + RS++ GD +NE+GIP+ +A + E+V+ +N
Sbjct: 285 TDTYGTKWL---KDIILSKRSDNAFRSIMVGDPKINLNEIGIPMGLALNLVVSEQVSSYN 341
Query: 131 M------CFLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFIN 184
C L L E L L + G + +R+ ++ L+ G I +R + DGD+V +N
Sbjct: 342 FETINLKCNLHLLTKEVL-LVRRNGNLIF-VRKANQ----LEIGDIAYRLLQDGDLVLVN 395
Query: 185 RPPTTHKHSLQALVVYIHDDHT-VKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVEL 243
RPP+ H+HSL AL + + V INPL C P DFDGDC+H + PQ L ++ E+ EL
Sbjct: 396 RPPSVHQHSLIALSAKLLSTQSAVSINPLCCDPFKGDFDGDCLHGYIPQCLQSRIELEEL 455
Query: 244 FSVEKQLLSSHSGNLNLQLSTDSLLSLKMLVKKG-FMDRAAANQLAMF---LSLPLPRPA 299
+ QLL+ G + L+ DSL + L F+++A QL M +SL P P+
Sbjct: 456 VGLSGQLLNQQDGRSLVSLTHDSLAAAHQLTNADVFLEKAEFQQLQMLSSSISL-TPMPS 514
Query: 300 LLKA-GSGDSYWTSIQILQCALPLSFDCTGGRYL-IRQSDILEFDLSRDVLPAVINEIAA 357
+ K+ S WT Q+ LP + + + L I+ S++L L + +
Sbjct: 515 VFKSTNSQGPLWTGKQLFGMLLPYGMNISFDQKLHIKDSEVLTCSSGSFWLQNNTSSL-F 573
Query: 358 SVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDF 395
SV F + +AL F Q VL E + G SV L D
Sbjct: 574 SVMFKEYGCKALEFLSSTQDVLCEFLTMWGLSVSLSDL 611
>Q4Q600_LEIMA (tr|Q4Q600) DNA-directed RNA polymerase OS=Leishmania major
GN=RPOIILS PE=3 SV=1
Length = 1662
Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 107/361 (29%), Positives = 174/361 (48%), Gaps = 30/361 (8%)
Query: 55 KPARDIETHFGVNKELSDASN--KAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGI 112
KPA+ G K+L + K +++ + K FS+R+VITGD ++EVG+
Sbjct: 296 KPAK-----VGDTKKLKSLTERLKGKYGRLRGNLMGKRVDFSARTVITGDPNIDVDEVGV 350
Query: 113 PLEIAQRITFEERVNLHNMCFLQKLVDE------NLCLAYKEGVSTYSLREGSKGHTYLK 166
P +A +TF ERVN+ N L + V N + V+ +L + + +L
Sbjct: 351 PFSVAMTLTFPERVNVINKKRLTEFVQRTTYPSANYIIRPNGNVTKLALVK-DRSAVHLD 409
Query: 167 PGQIVHRRIMDGDIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCV 226
G +V R ++DGD+V NR PT H+ S+ V + + +T ++N P ADFDGD +
Sbjct: 410 VGDVVERHVIDGDVVLFNRQPTLHRMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEM 469
Query: 227 HLFYPQSLAAKAEVVELFSVEKQLLSSHSGNLNLQLSTDSLL-SLKMLVKKGFMDRAAAN 285
+L PQSL KAE++E+ V K +S + + + DSLL S ++ K F+D+
Sbjct: 470 NLHVPQSLLTKAELIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFVDKYFIQ 529
Query: 286 QLAMFLSL-PLPRPALLKAGSGDSYWTSIQILQCALP-----------LSFDCTGGRYLI 333
+A++L L LP PA+LK WT QI LP F + +I
Sbjct: 530 SVALWLDLWELPIPAILKP---RPLWTGKQIFSLILPEVNHPASPYDKPPFPHNDKKIMI 586
Query: 334 RQSDILEFDLSRDVLPAVINEIAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLH 393
++ +L +++ V+ A + +F +G E F + +Q + + FSVG+
Sbjct: 587 QRGQLLVGAITKGVVGAAPGSLIHVIFNERGSDEVAKFINGVQRITTYFNYCFAFSVGVQ 646
Query: 394 D 394
D
Sbjct: 647 D 647
>E9BN38_LEIDB (tr|E9BN38) DNA-directed RNA polymerase OS=Leishmania donovani
(strain BPK282A1) GN=LDBPK_312680 PE=3 SV=1
Length = 1662
Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 101/338 (29%), Positives = 165/338 (48%), Gaps = 23/338 (6%)
Query: 76 KAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQ 135
K +++ + K FS+R+VITGD ++EVG+P +A +TF ERVN+ N L
Sbjct: 314 KGKYGRLRGNLMGKRVDFSARTVITGDPNIDVDEVGVPFSVAMTLTFPERVNVINKKRLT 373
Query: 136 KLVDE------NLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTT 189
+ V N + V+ +L + + +L G +V R ++DGD+V NR PT
Sbjct: 374 EFVQRTTYPSANYIIRPNGNVTKLALVK-DRNAVHLDVGDVVERHVIDGDVVLFNRQPTL 432
Query: 190 HKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQ 249
H+ S+ V + + +T ++N P ADFDGD ++L PQSL KAE++E+ V K
Sbjct: 433 HRMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKN 492
Query: 250 LLSSHSGNLNLQLSTDSLL-SLKMLVKKGFMDRAAANQLAMFLSL-PLPRPALLKAGSGD 307
+S + + + DSLL S ++ K F+D+ +A++L L LP PA+LK
Sbjct: 493 FVSPNKSAPCMGIVQDSLLGSYRLTDKDTFVDKYFIQSVALWLDLWELPIPAILKP---R 549
Query: 308 SYWTSIQILQCALP-----------LSFDCTGGRYLIRQSDILEFDLSRDVLPAVINEIA 356
WT QI LP F + +I++ +L +++ V+ A +
Sbjct: 550 PLWTGKQIFSLILPEVNHPASPYDKPPFPHNDKKIMIQRGQLLVGAITKGVVGAAPGSLI 609
Query: 357 ASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
+F +G E F + +Q + + FSVG+ D
Sbjct: 610 HVIFNERGSDEVAKFINGVQRITTYFNYCFAFSVGVQD 647
>Q95W43_TRYCR (tr|Q95W43) DNA-directed RNA polymerase OS=Trypanosoma cruzi
GN=RPIIls PE=3 SV=2
Length = 1731
Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 99/337 (29%), Positives = 163/337 (48%), Gaps = 21/337 (6%)
Query: 76 KAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQ 135
K +++ + K FS+R+VITGD ++EVG+P IA +TF ERV+ N L
Sbjct: 321 KGKYGRLRGNLMGKRVDFSARTVITGDPNIDVDEVGVPFSIAMTLTFPERVSAVNKKRLT 380
Query: 136 KLVDENLC-----LAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTH 190
+ V + + + G +T + L G +V R +++GD+V NR PT H
Sbjct: 381 EFVRRPVYPSANYIHHPNGTTTKLALRRDRSKVTLNIGDVVERHVINGDVVLFNRQPTLH 440
Query: 191 KHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQL 250
+ S+ V + + +T ++N P ADFDGD ++L PQSL KAE++E+ V K
Sbjct: 441 RMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNF 500
Query: 251 LSSHSGNLNLQLSTDSLL-SLKMLVKKGFMDRAAANQLAMFLSL-PLPRPALLKAGSGDS 308
+S + + + DSLL S ++ K F+D+ +A++L L LP PA+LK
Sbjct: 501 VSPNKSAPCMGIVQDSLLGSYRLTDKDTFLDKYFVQSVALWLDLWQLPVPAVLKP---RP 557
Query: 309 YWTSIQILQCALP-----------LSFDCTGGRYLIRQSDILEFDLSRDVLPAVINEIAA 357
WT Q+ LP F +IR+ +L +++ ++ A +
Sbjct: 558 LWTGKQVFSLILPEVNHPATPQERPPFPHNDSSIMIRRGQLLCGPITKGIVGAAPGSLIH 617
Query: 358 SVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
+F +G E F + +Q + + + GFSVG+ D
Sbjct: 618 VIFNERGSDEVARFINGVQRITTFFLINFGFSVGVQD 654
>Q4DDX5_TRYCC (tr|Q4DDX5) DNA-directed RNA polymerase OS=Trypanosoma cruzi
(strain CL Brener) GN=Tc00.1047053509011.20 PE=3 SV=1
Length = 1731
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 99/337 (29%), Positives = 163/337 (48%), Gaps = 21/337 (6%)
Query: 76 KAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQ 135
K +++ + K FS+R+VITGD ++EVG+P IA +TF ERV+ N L
Sbjct: 321 KGKYGRLRGNLMGKRVDFSARTVITGDPNIDVDEVGVPFSIAMTLTFPERVSAVNKKRLT 380
Query: 136 KLVDENLC-----LAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTH 190
+ V + + + G +T + L G +V R +++GD+V NR PT H
Sbjct: 381 EFVRRPVYPSANYIHHPNGTTTKLALRRDRSKVTLNIGDVVERHVINGDVVLFNRQPTLH 440
Query: 191 KHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQL 250
+ S+ V + + +T ++N P ADFDGD ++L PQSL KAE++E+ V K
Sbjct: 441 RMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNF 500
Query: 251 LSSHSGNLNLQLSTDSLL-SLKMLVKKGFMDRAAANQLAMFLSL-PLPRPALLKAGSGDS 308
+S + + + DSLL S ++ K F+D+ +A++L L LP PA+LK
Sbjct: 501 VSPNKSAPCMGIVQDSLLGSYRLTDKDTFLDKYFVQSVALWLDLWQLPVPAVLKP---RP 557
Query: 309 YWTSIQILQCALP-----------LSFDCTGGRYLIRQSDILEFDLSRDVLPAVINEIAA 357
WT Q+ LP F +IR+ +L +++ ++ A +
Sbjct: 558 LWTGKQVFSLILPEVNHPATPQERPPFPHNDSSIMIRRGQLLCGPITKGIVGAAPGSLIH 617
Query: 358 SVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
+F +G E F + +Q + + + GFSVG+ D
Sbjct: 618 VIFNERGSDEVARFINGVQRITTFFLINFGFSVGVQD 654
>M0VV75_HORVD (tr|M0VV75) DNA-directed RNA polymerase OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 741
Score = 144 bits (362), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 109/353 (30%), Positives = 169/353 (47%), Gaps = 20/353 (5%)
Query: 53 CAKPARDIETHFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGI 112
C K ++ + + + +D WL K +SK S + R + GD R++E+GI
Sbjct: 118 CLKLSKALHSKKTDKESSTDTHGMKWL---KDAILSKRSDNAFRGTMVGDPKIRLHEIGI 174
Query: 113 PLEIAQRITFEERVNLHNMCFLQKLVDE----NLCLAYKEGVSTYSLREGSKGHTYLKPG 168
P+++A + E VN +N + + N L K T +R+ ++ L G
Sbjct: 175 PVDLASNLVVSEHVNSYNFDSINSKCNHYLLANEVLVIKRSGKTILVRKPNQ----LVIG 230
Query: 169 QIVHRRIMDGDIVFINRPPTTHKHSLQALVVYIHDDHTV-KINPLICGPLGADFDGDCVH 227
VHR + DGD++ INRPP+ H+HSL L + +V INPL C PL DFDGDC+H
Sbjct: 231 DTVHRLLQDGDLILINRPPSVHQHSLIGLSAKLLPIQSVLSINPLCCAPLAGDFDGDCLH 290
Query: 228 LFYPQSLAAKAEVVELFSVEKQLLSSHSGNLNLQLSTDSLLSLKMLV-KKGFMDRAAANQ 286
+ PQS+ ++ E+ EL S+ QLL++ G + L+ DSL + +L + + + Q
Sbjct: 291 GYVPQSIQSRVELGELVSLSHQLLNAQDGRSLVSLTHDSLAAAYLLTSSEVLLKKTEIQQ 350
Query: 287 LAMFLS--LPLPRPALLKA-GSGDSYWTSIQILQCALP--LSFDCTGGRYLIRQSDILEF 341
M L P P PA++K+ S WT Q+ LP +SF ++I ++L
Sbjct: 351 FQMLLHPLSPTPGPAIMKSIHSHGPLWTGKQLFSMLLPSDMSFSIESKVHII-DGEVLAC 409
Query: 342 DLSRDVLPAVINEIAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
L I+ + + +F G AL Q VL E + G SV L D
Sbjct: 410 PSESFWLQNSISGLFSFMFKQYG-DTALELLSSAQDVLCEFLTMRGLSVSLSD 461
>K4E797_TRYCR (tr|K4E797) DNA-directed RNA polymerase (Fragment) OS=Trypanosoma
cruzi GN=TCSYLVIO_002864 PE=3 SV=1
Length = 1588
Score = 144 bits (362), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 98/337 (29%), Positives = 163/337 (48%), Gaps = 21/337 (6%)
Query: 76 KAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQ 135
K +++ + K FS+R+VITGD ++EVG+P IA +TF ERV+ N L
Sbjct: 176 KGKYGRLRGNLMGKRVDFSARTVITGDPNIDVDEVGVPFSIAMTLTFPERVSAVNKKRLT 235
Query: 136 KLVDENLC-----LAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTH 190
+ V + + + G +T + L G +V R +++GD+V NR PT H
Sbjct: 236 EFVRRPVYPSANYIHHPNGTTTKLALRRDRSKVTLNIGDVVERHLINGDVVLFNRQPTLH 295
Query: 191 KHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQL 250
+ S+ V + + +T ++N P ADFDGD ++L PQSL KAE++E+ V K
Sbjct: 296 RMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNF 355
Query: 251 LSSHSGNLNLQLSTDSLL-SLKMLVKKGFMDRAAANQLAMFLSL-PLPRPALLKAGSGDS 308
+S + + + DSLL S ++ K F+D+ +A++L L LP PA+L+
Sbjct: 356 VSPNKSAPCMGIVQDSLLGSYRLTDKDTFLDKYFVQSVALWLDLWQLPVPAVLRP---RP 412
Query: 309 YWTSIQILQCALP-----------LSFDCTGGRYLIRQSDILEFDLSRDVLPAVINEIAA 357
WT Q+ LP F +IR+ +L +++ ++ A +
Sbjct: 413 LWTGKQVFSLILPEVNHPATPQERPPFPHNDSSIMIRRGQLLCGPITKSIVGAAPGSLIH 472
Query: 358 SVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
+F +G E F + +Q + + + GFSVG+ D
Sbjct: 473 VIFNERGSDEVARFINGVQRITTFYLINFGFSVGVQD 509
>Q2PYS8_9FUNG (tr|Q2PYS8) DNA-directed RNA polymerase (Fragment) OS=Rozella
allomycis GN=RPB1 PE=3 SV=1
Length = 809
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 96/342 (28%), Positives = 166/342 (48%), Gaps = 34/342 (9%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDE 140
+++ + K FS+R+VIT D +++VG+P IA+ +T+ E V +N+ +LQKLV+
Sbjct: 69 RLRGNLMGKRVDFSARTVITPDPNLSLDQVGVPRTIAKTLTYPEIVTPYNIEYLQKLVNN 128
Query: 141 NLCLAYKEGVSTYSLREGS-------KGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHS 193
+ + Y +R+ K L+PG +V R I DGD+V NR P+ HK S
Sbjct: 129 G---PTEHPGARYVVRDDGNRIDLRFKTDVVLQPGYLVERHINDGDVVLFNRQPSLHKMS 185
Query: 194 LQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSS 253
+ + + T ++N + P ADFDGD ++L PQS+ AKAE+VEL V Q++S
Sbjct: 186 MMGHRIKVMPYSTFRLNLSVTTPYNADFDGDEMNLHIPQSVEAKAELVELALVPTQIVSP 245
Query: 254 HSGNLNLQLSTDSLLSLKMLVKK-GFMDRAAANQLAMFLSL---PLPRPALLKAGSGDSY 309
S + + D+L ++ ++ F+++A + M+L LPRP +LK
Sbjct: 246 QSNKPCMGIVQDTLCGVRKFTRRESFLNKAMVMNIVMWLPSWEGKLPRPCILKPV---PL 302
Query: 310 WTSIQILQCALPLSFDCT-----------------GGRYLIRQSDILEFDLSRDVLPAVI 352
W+ QI +P +C + LI +++ + + +
Sbjct: 303 WSGKQIFSMIIPKGVNCVTFHSTHPDNEYSDISPGDTKVLIEDGELISGIVCKKTVGPAA 362
Query: 353 NEIAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
+ ++ G + A FF+ +Q V+ + NGFS+G+ D
Sbjct: 363 GGLIHVIYNEHGSEVAKQFFNGVQTVVNNWLLINGFSIGIGD 404
>M0VV69_HORVD (tr|M0VV69) DNA-directed RNA polymerase OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 1056
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 107/336 (31%), Positives = 162/336 (48%), Gaps = 20/336 (5%)
Query: 71 SDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHN 130
+D WL K +SK S + R + GD R++E+GIP+++A + E VN +N
Sbjct: 322 TDTHGMKWL---KDAILSKRSDNAFRGTMVGDPKIRLHEIGIPVDLASNLVVSEHVNSYN 378
Query: 131 MCFLQKLVDE----NLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRP 186
+ + N L K T +R+ ++ L G VHR + DGD++ INRP
Sbjct: 379 FDSINSKCNHYLLANEVLVIKRSGKTILVRKPNQ----LVIGDTVHRLLQDGDLILINRP 434
Query: 187 PTTHKHSLQALVVYIHDDHTV-KINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFS 245
P+ H+HSL L + +V INPL C PL DFDGDC+H + PQS+ ++ E+ EL S
Sbjct: 435 PSVHQHSLIGLSAKLLPIQSVLSINPLCCAPLAGDFDGDCLHGYVPQSIQSRVELGELVS 494
Query: 246 VEKQLLSSHSGNLNLQLSTDSLLSLKMLV-KKGFMDRAAANQLAMFLS--LPLPRPALLK 302
+ QLL++ G + L+ DSL + +L + + + Q M L P P PA++K
Sbjct: 495 LSHQLLNAQDGRSLVSLTHDSLAAAYLLTSSEVLLKKTEIQQFQMLLHPLSPTPGPAIMK 554
Query: 303 A-GSGDSYWTSIQILQCALP--LSFDCTGGRYLIRQSDILEFDLSRDVLPAVINEIAASV 359
+ S WT Q+ LP +SF ++I ++L L I+ + + +
Sbjct: 555 SIHSHGPLWTGKQLFSMLLPSDMSFSIESKVHII-DGEVLACPSESFWLQNSISGLFSFM 613
Query: 360 FFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDF 395
F G AL Q VL E + G SV L D
Sbjct: 614 FKQYG-DTALELLSSAQDVLCEFLTMRGLSVSLSDI 648
>Q1L5Y5_9VIRI (tr|Q1L5Y5) DNA-directed RNA polymerase (Fragment) OS=Chara hispida
GN=RPD1 PE=2 SV=1
Length = 1144
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 112/359 (31%), Positives = 163/359 (45%), Gaps = 51/359 (14%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDE 140
+M+ K S S+RSVI D + EVG+P +A + EE V N+ ++
Sbjct: 271 RMRENISGKRSNNSARSVIVPDASIGLEEVGVPRSMAGNLFVEESVTQWNLESMR----- 325
Query: 141 NLCLAYKEGVSTYSLREGS-------KGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHS 193
CL K + R G K +T L G +V R++ DGDI+ +NR P+ H+HS
Sbjct: 326 --CLQAKGYLKDRFFRAGEAMAMRLEKEYTSLTIGDVVERKLSDGDIIVLNRQPSLHRHS 383
Query: 194 LQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSS 253
+ A I INP++CGP ADFDGD ++LF P SL A+AE +L + KQ++SS
Sbjct: 384 VIAFRACIVPTSAFGINPVVCGPFNADFDGDEMNLFVPTSLEAQAEARQLLLLRKQVVSS 443
Query: 254 HSGNLNLQLSTDSLLSLKMLVKKG-FMDRAAANQLAMFL------------SLPLPRPAL 300
G + L DSLL+ ML + F++R +QLAM S LP PA+
Sbjct: 444 QDGRAIVSLRQDSLLAAHMLTSEYVFLNRQEVSQLAMCADEFGQPVGVDSRSTILPEPAI 503
Query: 301 LKA-------GSGDSYWTSIQILQCALPLSFD---CTGGRYLIRQSDIL--------EFD 342
LK G WT Q+ +L F+ LIR ++L
Sbjct: 504 LKWPAXKHQNGESSGLWTGQQVFGMSLFKGFEYDWLDEDGVLIRDGELLVSEGLSSAWLR 563
Query: 343 LSRDVLPAVINEIAASVFFGKGPQE------ALNFFDVLQPVLMESIFSNGFSVGLHDF 395
R+ L + E+ F + A+N + +Q + E + GFSVGL D+
Sbjct: 564 SGREGLTHALWELGEESFCCSSGRNVFLESFAVNHLNKIQAIANEFLQLKGFSVGLQDY 622
>A1YIB0_9HOMO (tr|A1YIB0) DNA-directed RNA polymerase (Fragment) OS=Hydnum
repandum GN=RPB1 PE=3 SV=1
Length = 1010
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 99/337 (29%), Positives = 164/337 (48%), Gaps = 27/337 (8%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDE 140
+++ + K FSSR+VITGD ++EVG+P IA +T+ ERV +N+ LQ+LV
Sbjct: 265 RLRGNLMGKRVDFSSRTVITGDPNIMLDEVGVPKSIAMTLTYPERVTPYNIAQLQELV-R 323
Query: 141 NLCLAY-------KEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHS 193
N Y ++ LR + +L+ G IV R + DGD V NR P+ HK S
Sbjct: 324 NGPREYPGARYVVRDTGERIDLRYNKRADAFLQYGWIVERHLRDGDYVLFNRQPSLHKMS 383
Query: 194 LQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSS 253
+ + V + T ++N + P ADFDGD +++ PQS +AE+ ++ V +Q++S
Sbjct: 384 MMSHRVKLMPYSTFRLNLSVTPPYNADFDGDEMNMHVPQSEETRAELSQIAWVPRQIISP 443
Query: 254 HSGNLNLQLSTDSLLSL-KMLVKKGFMDRAAANQLAMFL---SLPLPRPALLKAGSGDSY 309
+ + + D+L + K ++ F+D +A + M++ +P PA+L +
Sbjct: 444 QANKPVMGIVQDTLCGIRKFTLRDTFLDWSAVQNILMWVPDWDGNVPIPAVL---APKPL 500
Query: 310 WTSIQILQCALPLSFDCTGGR------------YLIRQSDILEFDLSRDVLPAVINEIAA 357
WT QIL +P+ + LI +I+ + + + A +
Sbjct: 501 WTGKQILSMTIPVGINIVRAPEVSSPNPVEDDGMLIENGEIIYGIVDKKTVGAAQGGLVH 560
Query: 358 SVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
VF KGP+ F LQ V+ +F NGFS+G+ D
Sbjct: 561 VVFREKGPEACRGLFSGLQMVVNYWLFHNGFSIGIGD 597
>M0VV71_HORVD (tr|M0VV71) DNA-directed RNA polymerase OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 1045
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 107/336 (31%), Positives = 162/336 (48%), Gaps = 20/336 (5%)
Query: 71 SDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHN 130
+D WL K +SK S + R + GD R++E+GIP+++A + E VN +N
Sbjct: 322 TDTHGMKWL---KDAILSKRSDNAFRGTMVGDPKIRLHEIGIPVDLASNLVVSEHVNSYN 378
Query: 131 MCFLQKLVDE----NLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRP 186
+ + N L K T +R+ ++ L G VHR + DGD++ INRP
Sbjct: 379 FDSINSKCNHYLLANEVLVIKRSGKTILVRKPNQ----LVIGDTVHRLLQDGDLILINRP 434
Query: 187 PTTHKHSLQALVVYIHDDHTV-KINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFS 245
P+ H+HSL L + +V INPL C PL DFDGDC+H + PQS+ ++ E+ EL S
Sbjct: 435 PSVHQHSLIGLSAKLLPIQSVLSINPLCCAPLAGDFDGDCLHGYVPQSIQSRVELGELVS 494
Query: 246 VEKQLLSSHSGNLNLQLSTDSLLSLKMLV-KKGFMDRAAANQLAMFLS--LPLPRPALLK 302
+ QLL++ G + L+ DSL + +L + + + Q M L P P PA++K
Sbjct: 495 LSHQLLNAQDGRSLVSLTHDSLAAAYLLTSSEVLLKKTEIQQFQMLLHPLSPTPGPAIMK 554
Query: 303 A-GSGDSYWTSIQILQCALP--LSFDCTGGRYLIRQSDILEFDLSRDVLPAVINEIAASV 359
+ S WT Q+ LP +SF ++I ++L L I+ + + +
Sbjct: 555 SIHSHGPLWTGKQLFSMLLPSDMSFSIESKVHII-DGEVLACPSESFWLQNSISGLFSFM 613
Query: 360 FFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDF 395
F G AL Q VL E + G SV L D
Sbjct: 614 FKQYG-DTALELLSSAQDVLCEFLTMRGLSVSLSDI 648
>M0VV73_HORVD (tr|M0VV73) DNA-directed RNA polymerase OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 858
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 107/336 (31%), Positives = 162/336 (48%), Gaps = 20/336 (5%)
Query: 71 SDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHN 130
+D WL K +SK S + R + GD R++E+GIP+++A + E VN +N
Sbjct: 135 TDTHGMKWL---KDAILSKRSDNAFRGTMVGDPKIRLHEIGIPVDLASNLVVSEHVNSYN 191
Query: 131 MCFLQKLVDE----NLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRP 186
+ + N L K T +R+ ++ L G VHR + DGD++ INRP
Sbjct: 192 FDSINSKCNHYLLANEVLVIKRSGKTILVRKPNQ----LVIGDTVHRLLQDGDLILINRP 247
Query: 187 PTTHKHSLQALVVYIHDDHTV-KINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFS 245
P+ H+HSL L + +V INPL C PL DFDGDC+H + PQS+ ++ E+ EL S
Sbjct: 248 PSVHQHSLIGLSAKLLPIQSVLSINPLCCAPLAGDFDGDCLHGYVPQSIQSRVELGELVS 307
Query: 246 VEKQLLSSHSGNLNLQLSTDSLLSLKMLV-KKGFMDRAAANQLAMFLS--LPLPRPALLK 302
+ QLL++ G + L+ DSL + +L + + + Q M L P P PA++K
Sbjct: 308 LSHQLLNAQDGRSLVSLTHDSLAAAYLLTSSEVLLKKTEIQQFQMLLHPLSPTPGPAIMK 367
Query: 303 A-GSGDSYWTSIQILQCALP--LSFDCTGGRYLIRQSDILEFDLSRDVLPAVINEIAASV 359
+ S WT Q+ LP +SF ++I ++L L I+ + + +
Sbjct: 368 SIHSHGPLWTGKQLFSMLLPSDMSFSIESKVHII-DGEVLACPSESFWLQNSISGLFSFM 426
Query: 360 FFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDF 395
F G AL Q VL E + G SV L D
Sbjct: 427 FKQYG-DTALELLSSAQDVLCEFLTMRGLSVSLSDI 461
>M0VV68_HORVD (tr|M0VV68) DNA-directed RNA polymerase OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 869
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 107/336 (31%), Positives = 162/336 (48%), Gaps = 20/336 (5%)
Query: 71 SDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHN 130
+D WL K +SK S + R + GD R++E+GIP+++A + E VN +N
Sbjct: 135 TDTHGMKWL---KDAILSKRSDNAFRGTMVGDPKIRLHEIGIPVDLASNLVVSEHVNSYN 191
Query: 131 MCFLQKLVDE----NLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRP 186
+ + N L K T +R+ ++ L G VHR + DGD++ INRP
Sbjct: 192 FDSINSKCNHYLLANEVLVIKRSGKTILVRKPNQ----LVIGDTVHRLLQDGDLILINRP 247
Query: 187 PTTHKHSLQALVVYIHDDHTV-KINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFS 245
P+ H+HSL L + +V INPL C PL DFDGDC+H + PQS+ ++ E+ EL S
Sbjct: 248 PSVHQHSLIGLSAKLLPIQSVLSINPLCCAPLAGDFDGDCLHGYVPQSIQSRVELGELVS 307
Query: 246 VEKQLLSSHSGNLNLQLSTDSLLSLKMLV-KKGFMDRAAANQLAMFLS--LPLPRPALLK 302
+ QLL++ G + L+ DSL + +L + + + Q M L P P PA++K
Sbjct: 308 LSHQLLNAQDGRSLVSLTHDSLAAAYLLTSSEVLLKKTEIQQFQMLLHPLSPTPGPAIMK 367
Query: 303 A-GSGDSYWTSIQILQCALP--LSFDCTGGRYLIRQSDILEFDLSRDVLPAVINEIAASV 359
+ S WT Q+ LP +SF ++I ++L L I+ + + +
Sbjct: 368 SIHSHGPLWTGKQLFSMLLPSDMSFSIESKVHII-DGEVLACPSESFWLQNSISGLFSFM 426
Query: 360 FFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDF 395
F G AL Q VL E + G SV L D
Sbjct: 427 FKQYG-DTALELLSSAQDVLCEFLTMRGLSVSLSDI 461
>M0VV72_HORVD (tr|M0VV72) DNA-directed RNA polymerase OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 854
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 107/336 (31%), Positives = 162/336 (48%), Gaps = 20/336 (5%)
Query: 71 SDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHN 130
+D WL K +SK S + R + GD R++E+GIP+++A + E VN +N
Sbjct: 131 TDTHGMKWL---KDAILSKRSDNAFRGTMVGDPKIRLHEIGIPVDLASNLVVSEHVNSYN 187
Query: 131 MCFLQKLVDE----NLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRP 186
+ + N L K T +R+ ++ L G VHR + DGD++ INRP
Sbjct: 188 FDSINSKCNHYLLANEVLVIKRSGKTILVRKPNQ----LVIGDTVHRLLQDGDLILINRP 243
Query: 187 PTTHKHSLQALVVYIHDDHTV-KINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFS 245
P+ H+HSL L + +V INPL C PL DFDGDC+H + PQS+ ++ E+ EL S
Sbjct: 244 PSVHQHSLIGLSAKLLPIQSVLSINPLCCAPLAGDFDGDCLHGYVPQSIQSRVELGELVS 303
Query: 246 VEKQLLSSHSGNLNLQLSTDSLLSLKMLV-KKGFMDRAAANQLAMFLS--LPLPRPALLK 302
+ QLL++ G + L+ DSL + +L + + + Q M L P P PA++K
Sbjct: 304 LSHQLLNAQDGRSLVSLTHDSLAAAYLLTSSEVLLKKTEIQQFQMLLHPLSPTPGPAIMK 363
Query: 303 A-GSGDSYWTSIQILQCALP--LSFDCTGGRYLIRQSDILEFDLSRDVLPAVINEIAASV 359
+ S WT Q+ LP +SF ++I ++L L I+ + + +
Sbjct: 364 SIHSHGPLWTGKQLFSMLLPSDMSFSIESKVHII-DGEVLACPSESFWLQNSISGLFSFM 422
Query: 360 FFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDF 395
F G AL Q VL E + G SV L D
Sbjct: 423 FKQYG-DTALELLSSAQDVLCEFLTMRGLSVSLSDI 457
>M0VV76_HORVD (tr|M0VV76) DNA-directed RNA polymerase OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 927
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 107/336 (31%), Positives = 162/336 (48%), Gaps = 20/336 (5%)
Query: 71 SDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHN 130
+D WL K +SK S + R + GD R++E+GIP+++A + E VN +N
Sbjct: 322 TDTHGMKWL---KDAILSKRSDNAFRGTMVGDPKIRLHEIGIPVDLASNLVVSEHVNSYN 378
Query: 131 MCFLQKLVDE----NLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRP 186
+ + N L K T +R+ ++ L G VHR + DGD++ INRP
Sbjct: 379 FDSINSKCNHYLLANEVLVIKRSGKTILVRKPNQ----LVIGDTVHRLLQDGDLILINRP 434
Query: 187 PTTHKHSLQALVVYIHDDHTV-KINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFS 245
P+ H+HSL L + +V INPL C PL DFDGDC+H + PQS+ ++ E+ EL S
Sbjct: 435 PSVHQHSLIGLSAKLLPIQSVLSINPLCCAPLAGDFDGDCLHGYVPQSIQSRVELGELVS 494
Query: 246 VEKQLLSSHSGNLNLQLSTDSLLSLKMLV-KKGFMDRAAANQLAMFLS--LPLPRPALLK 302
+ QLL++ G + L+ DSL + +L + + + Q M L P P PA++K
Sbjct: 495 LSHQLLNAQDGRSLVSLTHDSLAAAYLLTSSEVLLKKTEIQQFQMLLHPLSPTPGPAIMK 554
Query: 303 A-GSGDSYWTSIQILQCALP--LSFDCTGGRYLIRQSDILEFDLSRDVLPAVINEIAASV 359
+ S WT Q+ LP +SF ++I ++L L I+ + + +
Sbjct: 555 SIHSHGPLWTGKQLFSMLLPSDMSFSIESKVHII-DGEVLACPSESFWLQNSISGLFSFM 613
Query: 360 FFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDF 395
F G AL Q VL E + G SV L D
Sbjct: 614 FKQYG-DTALELLSSAQDVLCEFLTMRGLSVSLSDI 648
>M0VV74_HORVD (tr|M0VV74) DNA-directed RNA polymerase OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 1025
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 107/336 (31%), Positives = 162/336 (48%), Gaps = 20/336 (5%)
Query: 71 SDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHN 130
+D WL K +SK S + R + GD R++E+GIP+++A + E VN +N
Sbjct: 322 TDTHGMKWL---KDAILSKRSDNAFRGTMVGDPKIRLHEIGIPVDLASNLVVSEHVNSYN 378
Query: 131 MCFLQKLVDE----NLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRP 186
+ + N L K T +R+ ++ L G VHR + DGD++ INRP
Sbjct: 379 FDSINSKCNHYLLANEVLVIKRSGKTILVRKPNQ----LVIGDTVHRLLQDGDLILINRP 434
Query: 187 PTTHKHSLQALVVYIHDDHTV-KINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFS 245
P+ H+HSL L + +V INPL C PL DFDGDC+H + PQS+ ++ E+ EL S
Sbjct: 435 PSVHQHSLIGLSAKLLPIQSVLSINPLCCAPLAGDFDGDCLHGYVPQSIQSRVELGELVS 494
Query: 246 VEKQLLSSHSGNLNLQLSTDSLLSLKMLV-KKGFMDRAAANQLAMFLS--LPLPRPALLK 302
+ QLL++ G + L+ DSL + +L + + + Q M L P P PA++K
Sbjct: 495 LSHQLLNAQDGRSLVSLTHDSLAAAYLLTSSEVLLKKTEIQQFQMLLHPLSPTPGPAIMK 554
Query: 303 A-GSGDSYWTSIQILQCALP--LSFDCTGGRYLIRQSDILEFDLSRDVLPAVINEIAASV 359
+ S WT Q+ LP +SF ++I ++L L I+ + + +
Sbjct: 555 SIHSHGPLWTGKQLFSMLLPSDMSFSIESKVHII-DGEVLACPSESFWLQNSISGLFSFM 613
Query: 360 FFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDF 395
F G AL Q VL E + G SV L D
Sbjct: 614 FKQYG-DTALELLSSAQDVLCEFLTMRGLSVSLSDI 648
>G0TZQ4_TRYVY (tr|G0TZQ4) DNA-directed RNA polymerase (Fragment) OS=Trypanosoma
vivax (strain Y486) GN=TVY486_0806890 PE=3 SV=1
Length = 1068
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 103/353 (29%), Positives = 168/353 (47%), Gaps = 23/353 (6%)
Query: 62 THFGVNKELSDASN--KAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQR 119
T NK+L + K +++ + K FS+R+VITGD ++EVG+P +A
Sbjct: 318 TKVNDNKKLKSLTERLKGKYGRLRGNLMGKRVDFSARTVITGDPNIDVDEVGVPFSVAMT 377
Query: 120 ITFEERVNLHNMCFLQKLVDENLC-----LAYKEGVSTYSLREGSKGHTYLKPGQIVHRR 174
+TF ERV+ N L + V + + + G +T + L G +V R
Sbjct: 378 LTFPERVSAVNRKRLTEFVRRTVYPSANYVHHPNGTTTKLALLRDRTKVTLNVGDVVERH 437
Query: 175 IMDGDIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSL 234
+++GD+V NR PT H+ S+ V + + +T ++N P ADFDGD ++L PQSL
Sbjct: 438 VINGDVVLFNRQPTLHRMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSL 497
Query: 235 AAKAEVVELFSVEKQLLSSHSGNLNLQLSTDSLL-SLKMLVKKGFMDRAAANQLAMFLSL 293
KAE++E+ V K +S + + + DSLL S ++ K F+D+ +A++L L
Sbjct: 498 LTKAELIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFLDKYFVQSVALWLDL 557
Query: 294 -PLPRPALLKAGSGDSYWTSIQILQCALP-----------LSFDCTGGRYLIRQSDILEF 341
LP PA+LK WT Q+ LP F +IR+ +L
Sbjct: 558 WQLPIPAILKPY---PLWTGKQVFSLILPEVNHPAVQQVKPPFPHNDSSVVIRRGQLLCG 614
Query: 342 DLSRDVLPAVINEIAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
+++ ++ A + +F G E F + +Q V + + GFSVG+ D
Sbjct: 615 PITKGIVGAAPGSLIHVIFNEHGSDEVARFINGVQRVTTYFLLNFGFSVGVQD 667
>Q26794_9TRYP (tr|Q26794) DNA-directed RNA polymerase OS=Trypanosoma brucei PE=3
SV=1
Length = 1765
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 108/364 (29%), Positives = 176/364 (48%), Gaps = 32/364 (8%)
Query: 76 KAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQ 135
K +++ + K FS+R+VITGD ++EVG+P +A +TF ERVN N L
Sbjct: 337 KGKYGRLRGNLMGKRVDFSARTVITGDPNIDVDEVGVPFSVAMTLTFPERVNTINKKRLT 396
Query: 136 KLVDENLC-----LAYKEGVST--YSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPT 188
+ + + + G T LR+ SK L G +V R +++GD+V NR PT
Sbjct: 397 EFARRTVYPSANYIHHPNGTITKLALLRDRSK--VTLNIGDVVERHVINGDVVLFNRQPT 454
Query: 189 THKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEK 248
H+ S+ V + + +T ++N P ADFDGD ++L PQSL KAE++E+ V K
Sbjct: 455 LHRMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPK 514
Query: 249 QLLSSHSGNLNLQLSTDSLL-SLKMLVKKGFMDRAAANQLAMFLSL-PLPRPALLKAGSG 306
+S + + + DSLL S ++ K F+D+ +A++L L LP PA+LK
Sbjct: 515 NFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFLDKYFVQSVALWLDLWQLPIPAILKP--- 571
Query: 307 DSYWTSIQILQCALP-----------LSFDCTGGRYLIRQSDILEFDLSRDVLPAVINEI 355
WT Q+ LP F +IR+ +L +++ ++ A +
Sbjct: 572 RPLWTGKQVFSLILPEVNHPATPQDRPPFPHNDSVVMIRRGQLLCGPITKSIVGAAPGSL 631
Query: 356 AASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD-FSISGAVKRVTD------RN 408
+F G E F + +Q V + + GFSVG+ D + S ++++ D RN
Sbjct: 632 IHVIFNEHGSDEVARFINGVQRVTTFFLLNFGFSVGVQDTVADSDTLRQMNDVLVKTRRN 691
Query: 409 IGKV 412
+ K+
Sbjct: 692 VEKI 695
>R7SV30_DICSQ (tr|R7SV30) Beta and beta-prime subunits of DNA dependent
RNA-polymerase OS=Dichomitus squalens (strain LYAD-421)
GN=DICSQDRAFT_66181 PE=4 SV=1
Length = 1749
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 94/336 (27%), Positives = 161/336 (47%), Gaps = 25/336 (7%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDE 140
+++ + K FS+R+VITGD ++EVG+P IA +TF ERV +N+ +LQ+LV
Sbjct: 344 RLRGNLMGKRVDFSARTVITGDPNLELDEVGVPRSIAMNLTFPERVTPYNIAYLQELVRN 403
Query: 141 NLCL------AYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSL 194
+ ++ LR + +L+ G IV R + DGD V NR P+ HK S+
Sbjct: 404 GPTVYPGARYVVRDTGERIDLRYNKRADAFLQYGWIVERHLKDGDFVLFNRQPSLHKMSM 463
Query: 195 QALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSH 254
+ V + T ++N + P ADFDGD +++ PQS +AE+ ++ V +Q++S
Sbjct: 464 MSHRVRLMPYSTFRLNLSVTPPYNADFDGDEMNMHVPQSEETRAELSQIAWVPRQIISPQ 523
Query: 255 SGNLNLQLSTDSLLSL-KMLVKKGFMDRAAANQLAMFL---SLPLPRPALLKAGSGDSYW 310
+ + + D+L + K ++ F+D + +++ +P PA++K W
Sbjct: 524 ANKPVMGIVQDTLCGIRKFTLRDTFLDWNQVQNILLWVPDWDGTVPTPAIIKP---KPMW 580
Query: 311 TSIQILQCALPLSFDCTGGR------------YLIRQSDILEFDLSRDVLPAVINEIAAS 358
T Q+L +P + +I DI+ + + + A +
Sbjct: 581 TGKQLLSMCIPRGINIFRAPDPKSNNPVFDDGMMIENGDIVFGVVEKKTVGASQGGLVHV 640
Query: 359 VFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
VF KGP+ F LQ V+ +F NGFS+G+ D
Sbjct: 641 VFREKGPEATRTLFTGLQQVVNYWLFHNGFSIGIGD 676
>Q9NJR9_LEIDO (tr|Q9NJR9) DNA-directed RNA polymerase OS=Leishmania donovani
GN=RNPIILS PE=3 SV=2
Length = 1665
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 99/321 (30%), Positives = 159/321 (49%), Gaps = 23/321 (7%)
Query: 93 FSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDE------NLCLAY 146
FS+R+VITGD ++EVG+P +A +TF ERVN+ N L + V N +
Sbjct: 331 FSARTVITGDPNIDVDEVGVPFSVAMTLTFPERVNVINKKRLTEFVQRTTYPSANYIIRP 390
Query: 147 KEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALVVYIHDDHT 206
V+ +L + + +L G +V R ++DGD+V NR PT H+ S+ V + + +T
Sbjct: 391 NGNVTKLALVK-DRNAVHLDVGDVVERHVIDGDVVLFNRQPTLHRMSMMGHRVRVLNYNT 449
Query: 207 VKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHSGNLNLQLSTDS 266
++N P ADFDGD ++L PQSL KAE++E+ V K +S + + + DS
Sbjct: 450 FRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAPCMGIVQDS 509
Query: 267 LL-SLKMLVKKGFMDRAAANQLAMFLSL-PLPRPALLKAGSGDSYWTSIQILQCALP--- 321
LL S ++ K F+D+ +A++L L LP PA+LK WT QI LP
Sbjct: 510 LLGSYRLTDKDTFVDKYFIQSVALWLDLWELPIPAILKP---RPLWTGKQIFSLILPEVN 566
Query: 322 --------LSFDCTGGRYLIRQSDILEFDLSRDVLPAVINEIAASVFFGKGPQEALNFFD 373
F + +I++ +L +++ V+ A + +F +G E F +
Sbjct: 567 HPASPYDKPPFPHNDKKIMIQRGQLLVGAITKGVVGAAPGSLIHVIFNERGSDEVAKFIN 626
Query: 374 VLQPVLMESIFSNGFSVGLHD 394
+Q + + FSVG+ D
Sbjct: 627 GVQRITTYFNYCFAFSVGVQD 647
>Q26791_9TRYP (tr|Q26791) DNA-directed RNA polymerase OS=Trypanosoma brucei PE=3
SV=1
Length = 1765
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 108/364 (29%), Positives = 176/364 (48%), Gaps = 32/364 (8%)
Query: 76 KAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQ 135
K +++ + K FS+R+VITGD ++EVG+P +A +TF ERVN N L
Sbjct: 337 KGKYGRLRGNLMGKRVDFSARTVITGDPNIDVDEVGVPFSVAMTLTFPERVNTVNKKRLT 396
Query: 136 KLVDENLC-----LAYKEGVST--YSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPT 188
+ + + + G T LR+ SK L G +V R +++GD+V NR PT
Sbjct: 397 EFARRTVYPSANYIHHPNGTITKLALLRDRSK--VTLNIGDVVERHVINGDVVLFNRQPT 454
Query: 189 THKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEK 248
H+ S+ V + + +T ++N P ADFDGD ++L PQSL KAE++E+ V K
Sbjct: 455 LHRMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPK 514
Query: 249 QLLSSHSGNLNLQLSTDSLL-SLKMLVKKGFMDRAAANQLAMFLSL-PLPRPALLKAGSG 306
+S + + + DSLL S ++ K F+D+ +A++L L LP PA+LK
Sbjct: 515 NFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFLDKYFVQSVALWLDLWQLPIPAILKP--- 571
Query: 307 DSYWTSIQILQCALP-----------LSFDCTGGRYLIRQSDILEFDLSRDVLPAVINEI 355
WT Q+ LP F +IR+ +L +++ ++ A +
Sbjct: 572 RPLWTGKQVFSLILPEVNHPATPQDRPPFPHNDSVVMIRRGQLLCGPITKSIVGAAPGSL 631
Query: 356 AASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD-FSISGAVKRVTD------RN 408
+F G E F + +Q V + + GFSVG+ D + S ++++ D RN
Sbjct: 632 IHVIFNEHGSDEVARFINGVQRVTTFFLLNFGFSVGVQDTVADSDTLRQMNDVLVKTRRN 691
Query: 409 IGKV 412
+ K+
Sbjct: 692 VEKI 695
>C9ZMF2_TRYB9 (tr|C9ZMF2) DNA-directed RNA polymerase OS=Trypanosoma brucei
gambiense (strain MHOM/CI/86/DAL972) GN=TbgDal_IV5210
PE=3 SV=1
Length = 1765
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 108/364 (29%), Positives = 176/364 (48%), Gaps = 32/364 (8%)
Query: 76 KAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQ 135
K +++ + K FS+R+VITGD ++EVG+P +A +TF ERVN N L
Sbjct: 337 KGKYGRLRGNLMGKRVDFSARTVITGDPNIDVDEVGVPFSVAMTLTFPERVNTVNKKRLT 396
Query: 136 KLVDENLC-----LAYKEGVST--YSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPT 188
+ + + + G T LR+ SK L G +V R +++GD+V NR PT
Sbjct: 397 EFARRTVYPSANYIHHPNGTITKLALLRDRSK--VTLNIGDVVERHVINGDVVLFNRQPT 454
Query: 189 THKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEK 248
H+ S+ V + + +T ++N P ADFDGD ++L PQSL KAE++E+ V K
Sbjct: 455 LHRMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPK 514
Query: 249 QLLSSHSGNLNLQLSTDSLL-SLKMLVKKGFMDRAAANQLAMFLSL-PLPRPALLKAGSG 306
+S + + + DSLL S ++ K F+D+ +A++L L LP PA+LK
Sbjct: 515 NFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFLDKYFVQSVALWLDLWQLPIPAILKP--- 571
Query: 307 DSYWTSIQILQCALP-----------LSFDCTGGRYLIRQSDILEFDLSRDVLPAVINEI 355
WT Q+ LP F +IR+ +L +++ ++ A +
Sbjct: 572 RPLWTGKQVFSLILPEVNHPATPQDRPPFPHNDSVVMIRRGQLLCGPITKSIVGAAPGSL 631
Query: 356 AASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD-FSISGAVKRVTD------RN 408
+F G E F + +Q V + + GFSVG+ D + S ++++ D RN
Sbjct: 632 IHVIFNEHGSDEVARFINGVQRVTTFFLLNFGFSVGVQDTVADSDTLRQMNDVLVKTRRN 691
Query: 409 IGKV 412
+ K+
Sbjct: 692 VEKI 695
>Q584K3_TRYB2 (tr|Q584K3) DNA-directed RNA polymerase OS=Trypanosoma brucei
brucei (strain 927/4 GUTat10.1) GN=Tb927.4.5020 PE=3
SV=1
Length = 1765
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 108/364 (29%), Positives = 176/364 (48%), Gaps = 32/364 (8%)
Query: 76 KAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQ 135
K +++ + K FS+R+VITGD ++EVG+P +A +TF ERVN N L
Sbjct: 337 KGKYGRLRGNLMGKRVDFSARTVITGDPNIDVDEVGVPFSVAMTLTFPERVNTVNKKRLT 396
Query: 136 KLVDENLC-----LAYKEGVST--YSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPT 188
+ + + + G T LR+ SK L G +V R +++GD+V NR PT
Sbjct: 397 EFARRTVYPSANYIHHPNGTITKLALLRDRSK--VTLNIGDVVERHVINGDVVLFNRQPT 454
Query: 189 THKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEK 248
H+ S+ V + + +T ++N P ADFDGD ++L PQSL KAE++E+ V K
Sbjct: 455 LHRMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPK 514
Query: 249 QLLSSHSGNLNLQLSTDSLL-SLKMLVKKGFMDRAAANQLAMFLSL-PLPRPALLKAGSG 306
+S + + + DSLL S ++ K F+D+ +A++L L LP PA+LK
Sbjct: 515 NFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFLDKYFVQSVALWLDLWQLPIPAILKP--- 571
Query: 307 DSYWTSIQILQCALP-----------LSFDCTGGRYLIRQSDILEFDLSRDVLPAVINEI 355
WT Q+ LP F +IR+ +L +++ ++ A +
Sbjct: 572 RPLWTGKQVFSLILPEVNHPATPQDRPPFPHNDSVVMIRRGQLLCGPITKSIVGAAPGSL 631
Query: 356 AASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD-FSISGAVKRVTD------RN 408
+F G E F + +Q V + + GFSVG+ D + S ++++ D RN
Sbjct: 632 IHVIFNEHGSDEVARFINGVQRVTTFFLLNFGFSVGVQDTVADSDTLRQMNDVLVKTRRN 691
Query: 409 IGKV 412
+ K+
Sbjct: 692 VEKI 695
>C9ZWN4_TRYB9 (tr|C9ZWN4) DNA-directed RNA polymerase (Fragment) OS=Trypanosoma
brucei gambiense (strain MHOM/CI/86/DAL972)
GN=TbgDal_VIII7660 PE=3 SV=1
Length = 948
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 108/364 (29%), Positives = 176/364 (48%), Gaps = 32/364 (8%)
Query: 76 KAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQ 135
K +++ + K FS+R+VITGD ++EVG+P +A +TF ERVN N L
Sbjct: 337 KGKYGRLRGNLMGKRVDFSARTVITGDPNIDVDEVGVPFSVAMTLTFPERVNTVNKKRLT 396
Query: 136 KLVDENLC-----LAYKEGVST--YSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPT 188
+ + + + G T LR+ SK L G +V R +++GD+V NR PT
Sbjct: 397 EFARRTVYPSANYIHHPNGTITKLALLRDRSK--VTLNIGDVVERHVINGDVVLFNRQPT 454
Query: 189 THKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEK 248
H+ S+ V + + +T ++N P ADFDGD ++L PQSL KAE++E+ V K
Sbjct: 455 LHRMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPK 514
Query: 249 QLLSSHSGNLNLQLSTDSLL-SLKMLVKKGFMDRAAANQLAMFLSL-PLPRPALLKAGSG 306
+S + + + DSLL S ++ K F+D+ +A++L L LP PA+LK
Sbjct: 515 NFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFLDKYFVQSVALWLDLWQLPIPAILKP--- 571
Query: 307 DSYWTSIQILQCALP-----------LSFDCTGGRYLIRQSDILEFDLSRDVLPAVINEI 355
WT Q+ LP F +IR+ +L +++ ++ A +
Sbjct: 572 RPLWTGKQVFSLILPEVNHPATPQDRPPFPHNDSVVMIRRGQLLCGPITKSIVGAAPGSL 631
Query: 356 AASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD-FSISGAVKRVTD------RN 408
+F G E F + +Q V + + GFSVG+ D + S ++++ D RN
Sbjct: 632 IHVIFNEHGSDEVARFINGVQRVTTFFLLNFGFSVGVQDTVADSDTLRQMNDVLVKTRRN 691
Query: 409 IGKV 412
+ K+
Sbjct: 692 VEKI 695
>Q57YU2_TRYB2 (tr|Q57YU2) DNA-directed RNA polymerase OS=Trypanosoma brucei
brucei (strain 927/4 GUTat10.1) GN=Tb927.8.7400 PE=3
SV=1
Length = 1765
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 108/364 (29%), Positives = 176/364 (48%), Gaps = 32/364 (8%)
Query: 76 KAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQ 135
K +++ + K FS+R+VITGD ++EVG+P +A +TF ERVN N L
Sbjct: 337 KGKYGRLRGNLMGKRVDFSARTVITGDPNIDVDEVGVPFSVAMTLTFPERVNTVNKKRLT 396
Query: 136 KLVDENLC-----LAYKEGVST--YSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPT 188
+ + + + G T LR+ SK L G +V R +++GD+V NR PT
Sbjct: 397 EFARRTVYPSANYIHHPNGTITKLALLRDRSK--VTLNIGDVVERHVINGDVVLFNRQPT 454
Query: 189 THKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEK 248
H+ S+ V + + +T ++N P ADFDGD ++L PQSL KAE++E+ V K
Sbjct: 455 LHRMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPK 514
Query: 249 QLLSSHSGNLNLQLSTDSLL-SLKMLVKKGFMDRAAANQLAMFLSL-PLPRPALLKAGSG 306
+S + + + DSLL S ++ K F+D+ +A++L L LP PA+LK
Sbjct: 515 NFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFLDKYFVQSVALWLDLWQLPIPAILKP--- 571
Query: 307 DSYWTSIQILQCALP-----------LSFDCTGGRYLIRQSDILEFDLSRDVLPAVINEI 355
WT Q+ LP F +IR+ +L +++ ++ A +
Sbjct: 572 RPLWTGKQVFSLILPEVNHPATPQDRPPFPHNDSVVMIRRGQLLCGPITKSIVGAAPGSL 631
Query: 356 AASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD-FSISGAVKRVTD------RN 408
+F G E F + +Q V + + GFSVG+ D + S ++++ D RN
Sbjct: 632 IHVIFNEHGSDEVARFINGVQRVTTFFLLNFGFSVGVQDTVADSDTLRQMNDVLVKTRRN 691
Query: 409 IGKV 412
+ K+
Sbjct: 692 VEKI 695
>B0DB45_LACBS (tr|B0DB45) DNA-directed RNA polymerase OS=Laccaria bicolor (strain
S238N-H82 / ATCC MYA-4686) GN=LACBIDRAFT_327452 PE=3
SV=1
Length = 1742
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 98/337 (29%), Positives = 164/337 (48%), Gaps = 27/337 (8%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDE 140
+++ + K FS+R+VITGD ++EVG+P IA +T+ ERV +N+ +LQ+LV
Sbjct: 341 RLRGNLMGKRVDFSARTVITGDPNLELDEVGVPRSIAMNLTYPERVTPYNIAYLQELV-R 399
Query: 141 NLCLAY-------KEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHS 193
N AY ++ LR + +L+ G IV R + DGD V NR P+ HK S
Sbjct: 400 NGPTAYPGARYVVRDTGERIDLRYNKRADAFLQYGWIVERHLKDGDFVLFNRQPSLHKMS 459
Query: 194 LQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSS 253
+ + V + T ++N + P ADFDGD +++ PQS +AE+ ++ V +Q++S
Sbjct: 460 MMSHRVKLMYYSTFRLNLSVTPPYNADFDGDEMNMHVPQSEETRAELSQIAWVPRQIISP 519
Query: 254 HSGNLNLQLSTDSLLSL-KMLVKKGFMDRAAANQLAMFLSL---PLPRPALLKAGSGDSY 309
+ + + D+L + K ++ F+D + +++ +P PA+LK
Sbjct: 520 QANKPVMGIVQDTLCGIRKFTLRDTFLDWNQVQNILLWVPEWDGSVPIPAILKP---KPL 576
Query: 310 WTSIQILQCALPLSFDCTGGR------------YLIRQSDILEFDLSRDVLPAVINEIAA 357
WT QIL A+P + LI +++ + + + A +
Sbjct: 577 WTGKQILSLAIPRGINIHRSPDPKSSNPVFDDGVLIENGELIFGIVEKKTVGASQGGLVH 636
Query: 358 SVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
VF KGP+ F LQ V+ +F NGFS+G+ D
Sbjct: 637 VVFREKGPEATRQLFTGLQMVVNYWLFHNGFSIGIGD 673
>Q0PQ11_9PEZI (tr|Q0PQ11) DNA-directed RNA polymerase (Fragment) OS=Simonyella
variegata GN=RPB1 PE=3 SV=1
Length = 1013
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 99/338 (29%), Positives = 163/338 (48%), Gaps = 26/338 (7%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDE 140
+++ + K FS+R+VITGD ++EVG+P+ I + +T+ E VN N+ +L +LV+
Sbjct: 271 RLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPVTICKTLTYVETVNPRNIAYLSRLVET 330
Query: 141 NLCL-------AYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHS 193
L + T+ LR K L+ G V R I DGD + NR P+ HK S
Sbjct: 331 GPNLHPGANYVINMDRTKTWDLRR-VKNPPRLEYGWQVERHIDDGDYIIFNRQPSLHKES 389
Query: 194 LQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSS 253
+ V + T ++N + GP ADFDGD ++L PQ+ A +AEV EL V ++S
Sbjct: 390 MMGHRVKVMPWSTFRLNLSVTGPYNADFDGDEMNLHVPQTEATRAEVKELCMVPHNIVSP 449
Query: 254 HSGNLNLQLSTDSLLSLKMLVKKG-FMDRAAANQLAMFLSLP---LPRPALLKAGSGDSY 309
+ + D+L + + ++ F+ + A + M++ +P+PALLK
Sbjct: 450 QRNGPLMGIVQDTLCGIYKICRRDVFLTQEQAMNVLMWVPEWDGIMPQPALLKP---KPM 506
Query: 310 WTSIQILQCALPLSFDCTGGR-----------YLIRQSDILEFDLSRDVLPAVINEIAAS 358
WT QI+ ALP + G + +++ S+ + A I
Sbjct: 507 WTGKQIISLALPAGLNLLRGSEEGMSPVNDDGLFVNNGELMFGLFSKKSVGASGGGIIHV 566
Query: 359 VFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDFS 396
+F KGP A+ FF+ Q ++ + NGFS+G+ D +
Sbjct: 567 IFNEKGPDAAVRFFNGAQQIVNYWLLQNGFSIGIGDTT 604
>A8N128_COPC7 (tr|A8N128) DNA-directed RNA polymerase OS=Coprinopsis cinerea
(strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003)
GN=CC1G_11229 PE=3 SV=2
Length = 1745
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 99/369 (26%), Positives = 170/369 (46%), Gaps = 41/369 (11%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDE 140
+++ + K FS+R+VITGD ++EVG+P IA +T+ ERV +N+ +LQ+LV
Sbjct: 350 RLRGNLMGKRVDFSARTVITGDPNLELDEVGVPKSIAMNLTYPERVTPYNIAYLQELV-- 407
Query: 141 NLCLAYKEGVSTY--------------SLREGSKGHTYLKPGQIVHRRIMDGDIVFINRP 186
+ G +TY LR + +L+ G IV R + DGD V NR
Sbjct: 408 ------RNGPTTYPGARYVVRDTGERIDLRYNKRADAFLQLGWIVERHLKDGDYVLFNRQ 461
Query: 187 PTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSV 246
P+ HK S+ + V + T ++N + P ADFDGD +++ PQS +AE+ ++ V
Sbjct: 462 PSLHKMSMMSHRVRLMPYSTFRLNLSVTPPYNADFDGDEMNMHVPQSEETRAELSQIAWV 521
Query: 247 EKQLLSSHSGNLNLQLSTDSLLSL-KMLVKKGFMDRAAANQLAMFLSL---PLPRPALLK 302
+Q++S + + + D+L + K ++ F+D + +++ +P PA+LK
Sbjct: 522 PRQIVSPQANKPVMGIVQDTLCGIRKFTLRDTFLDWNHVQNILLWVPEWDGVVPTPAILK 581
Query: 303 AGSGDSYWTSIQILQCALPLSFDCTGGR------------YLIRQSDILEFDLSRDVLPA 350
WT QIL +P + LI + + + + ++ A
Sbjct: 582 P---KPLWTGKQILSLTIPRGINIQRASENKSSNPVFDDGMLIENGEFIYGIVDKKIVGA 638
Query: 351 VINEIAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDFSISGAVKRVTDRNIG 410
+ VF KGP+ F LQ ++ +F NGFS+G+ D +NI
Sbjct: 639 SAGGLVHVVFREKGPEATKQLFTGLQMIVNFWLFHNGFSIGIGDTIADARTMEFITKNIA 698
Query: 411 KVSPLLYQL 419
+ + Q+
Sbjct: 699 ESKAKVAQV 707
>M2QWM8_CERSU (tr|M2QWM8) DNA-directed RNA polymerase OS=Ceriporiopsis
subvermispora B GN=CERSUDRAFT_110068 PE=3 SV=1
Length = 1749
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 96/344 (27%), Positives = 164/344 (47%), Gaps = 41/344 (11%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDE 140
+++ + K FS+R+VITGD ++EVG+P IA +TF ERV +N+ +LQ+LV
Sbjct: 347 RLRGNLMGKRVDFSARTVITGDPNLDLDEVGVPRSIAMNLTFPERVTPYNIAYLQELV-- 404
Query: 141 NLCLAYKEGVSTY--------------SLREGSKGHTYLKPGQIVHRRIMDGDIVFINRP 186
+ G +TY LR + +L+ G IV R + DGD V NR
Sbjct: 405 ------RNGPTTYPGARYVVRDTGERIDLRYNKRADAFLQYGWIVERHLKDGDFVLFNRQ 458
Query: 187 PTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSV 246
P+ HK S+ + V + T ++N + P ADFDGD +++ PQS +AE+ ++ V
Sbjct: 459 PSLHKMSMMSHRVKLMPYSTFRLNLSVTPPYNADFDGDEMNMHVPQSEETRAELSQIAWV 518
Query: 247 EKQLLSSHSGNLNLQLSTDSLLSL-KMLVKKGFMDRAAANQLAMFL---SLPLPRPALLK 302
+Q++S + + + D+L + K ++ F+D + + +++ +P PA++K
Sbjct: 519 PRQIISPQANKPVMGIVQDTLCGIRKFTLRDTFLDWSQVQNILLWVPDWDGSVPTPAVIK 578
Query: 303 AGSGDSYWTSIQILQCALPLSFDCTGGR------------YLIRQSDILEFDLSRDVLPA 350
WT QIL +P + +I +I+ + + + A
Sbjct: 579 P---KPLWTGKQILSMVIPRGINIHRSPDPKSPNPVFDDGMMIENGEIIFGIVEKKTVGA 635
Query: 351 VINEIAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
+ VF KGP+ F +Q V+ +F NGFS+G+ D
Sbjct: 636 SQGGLIHVVFREKGPEACRTLFGGIQTVVNYWLFHNGFSIGIGD 679
>G9M7Z8_9FUNG (tr|G9M7Z8) DNA-directed RNA polymerase (Fragment) OS=Olpidium
bornovanus GN=RPB1 PE=3 SV=1
Length = 838
Score = 141 bits (356), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 104/346 (30%), Positives = 174/346 (50%), Gaps = 35/346 (10%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLV-- 138
+++ + K FS+R+VITGD I+EVGIP IA+ +TF E V +N+ +Q+LV
Sbjct: 81 RLRGNLMGKRVDFSARTVITGDPNLSIDEVGIPRSIARNLTFPEIVTPYNIDAMQQLVRN 140
Query: 139 --DENLCLAY--KEGVSTYSLREGSK-GHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHS 193
+E+ Y ++ LR + G L+ G V R ++DGD + NR P+ HK S
Sbjct: 141 GPNEHPGAKYVIRDTGERIDLRYHRRSGDIPLQIGWRVERHLVDGDTIVFNRQPSLHKMS 200
Query: 194 LQALVVYIHDDHTVKINPLICGPL----GADFDGDCVHLFYPQSLAAKAEVVELFSVEKQ 249
+ V I T ++N +CGP+ ADFDGD +++ PQSL AKAE+ E+ V KQ
Sbjct: 201 MMGHKVRIMPYSTFRLNLSVCGPISHPYNADFDGDEMNMHVPQSLEAKAEINEICMVPKQ 260
Query: 250 LLSSHSGNLNLQLSTDSLLSLKMLVKKG-FMDRAAANQLAMFL---SLPLPRPALLKAGS 305
+++ S + + D+L ++ + K+ F+D+A +AM++ LP PA+LK
Sbjct: 261 IVAPASSKPCMGIVQDTLCGIRKMTKRDVFLDKAFVMNMAMWVPDWDGVLPIPAILKP-- 318
Query: 306 GDSYWTSIQILQCALPLSF---------------DCTGG--RYLIRQSDILEFDLSRDVL 348
WT Q+L +P D + G + +I ++L + + +
Sbjct: 319 -KPLWTGKQMLSMLIPKGVNVQTFHSEHPDNELTDISPGDTKVIIENGELLAGIVCKKTV 377
Query: 349 PAVINEIAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
A + ++ KGP+ +F+ Q ++ +F GFS+G+ D
Sbjct: 378 GASAGGLVHVIWQEKGPEVCKTWFNGTQRLVNYWLFQYGFSIGIGD 423
>Q2PYR1_9FUNG (tr|Q2PYR1) DNA-directed RNA polymerase (Fragment) OS=Spiromyces
aspiralis GN=RPB1 PE=3 SV=1
Length = 1022
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 103/366 (28%), Positives = 172/366 (46%), Gaps = 45/366 (12%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLV-- 138
+++ + K FS+R+VITGD I+EVG+P IA+ +T+ E V +N+ LQ+LV
Sbjct: 277 RLRGNLMGKRVDFSARTVITGDPNISIDEVGVPRSIARNLTYPEVVTPYNIEKLQELVRN 336
Query: 139 --DENLCLAY--KEGVSTYSLREGSKGHTY-LKPGQIVHRRIMDGDIVFINRPPTTHKHS 193
E+ Y ++ LR +G L G V R IMDGD+V NR P+ HK S
Sbjct: 337 GPTEHPGAKYVIRDTGERIDLRYNKRGGDIPLAIGYRVERHIMDGDVVIFNRQPSLHKMS 396
Query: 194 LQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSS 253
+ V + T ++N + P ADFDGD +++ PQS ++AE+ E+ V +Q++S
Sbjct: 397 MMGHRVRVLPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSEESRAEIKEICMVPRQIISP 456
Query: 254 HSGNLNLQLSTDSLLSLKMLVKKGFMDRAAANQLAM--FLSLP-----LPRPALLKAGSG 306
+ + + + D+L +++ ++ D A L M + +P +P PA++K
Sbjct: 457 QANSPVMGIVQDTLCAIRKFTRR---DNFMAKDLVMNILMHIPDWDGTVPTPAIIKP--- 510
Query: 307 DSYWTSIQILQCALPLSFDC-----------------TGGRYLIRQSDILEFDLSRDVLP 349
WT QI A+P +C R +I ++L + + +
Sbjct: 511 KPLWTGKQIYSLAIPKGINCLRFHSTHPDNETTFVSPGDTRVIIEDGELLAGIICKKTVD 570
Query: 350 AVINEIAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD--------FSISGAV 401
A + V +GP+ A FF+ Q ++ NGFS+G+ D ++S +
Sbjct: 571 ASEGSLVHVVMAERGPEVAKKFFNTTQRIVDYWFLQNGFSIGIGDTIADDDTMLNVSNII 630
Query: 402 KRVTDR 407
K DR
Sbjct: 631 KEAYDR 636
>M0VV70_HORVD (tr|M0VV70) DNA-directed RNA polymerase OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 682
Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 106/329 (32%), Positives = 160/329 (48%), Gaps = 20/329 (6%)
Query: 78 WLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKL 137
WL K +SK S + R + GD R++E+GIP+++A + E VN +N +
Sbjct: 3 WL---KDAILSKRSDNAFRGTMVGDPKIRLHEIGIPVDLASNLVVSEHVNSYNFDSINSK 59
Query: 138 VDE----NLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHS 193
+ N L K T +R+ ++ L G VHR + DGD++ INRPP+ H+HS
Sbjct: 60 CNHYLLANEVLVIKRSGKTILVRKPNQ----LVIGDTVHRLLQDGDLILINRPPSVHQHS 115
Query: 194 LQALVVYIHDDHTV-KINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLS 252
L L + +V INPL C PL DFDGDC+H + PQS+ ++ E+ EL S+ QLL+
Sbjct: 116 LIGLSAKLLPIQSVLSINPLCCAPLAGDFDGDCLHGYVPQSIQSRVELGELVSLSHQLLN 175
Query: 253 SHSGNLNLQLSTDSLLSLKMLV-KKGFMDRAAANQLAMFLS--LPLPRPALLKA-GSGDS 308
+ G + L+ DSL + +L + + + Q M L P P PA++K+ S
Sbjct: 176 AQDGRSLVSLTHDSLAAAYLLTSSEVLLKKTEIQQFQMLLHPLSPTPGPAIMKSIHSHGP 235
Query: 309 YWTSIQILQCALP--LSFDCTGGRYLIRQSDILEFDLSRDVLPAVINEIAASVFFGKGPQ 366
WT Q+ LP +SF ++I ++L L I+ + + +F G
Sbjct: 236 LWTGKQLFSMLLPSDMSFSIESKVHII-DGEVLACPSESFWLQNSISGLFSFMFKQYG-D 293
Query: 367 EALNFFDVLQPVLMESIFSNGFSVGLHDF 395
AL Q VL E + G SV L D
Sbjct: 294 TALELLSSAQDVLCEFLTMRGLSVSLSDI 322
>K5XJ33_AGABU (tr|K5XJ33) DNA-directed RNA polymerase OS=Agaricus bisporus var.
burnettii (strain JB137-S8 / ATCC MYA-4627 / FGSC 10392)
GN=AGABI1DRAFT_65857 PE=3 SV=1
Length = 1785
Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 98/344 (28%), Positives = 163/344 (47%), Gaps = 41/344 (11%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDE 140
+++ + K FS+R+VITGD ++EVG+P IA +TF ERV +N+ +LQ+LV
Sbjct: 341 RLRGNLMGKRVDFSARTVITGDPNLELDEVGVPKSIAMNLTFPERVTPYNITYLQELV-- 398
Query: 141 NLCLAYKEGVSTY--------------SLREGSKGHTYLKPGQIVHRRIMDGDIVFINRP 186
+ G +TY LR + +L+ G IV R + DGD V NR
Sbjct: 399 ------RNGPTTYPGARYVVRDTGERIDLRYNKRADAFLQYGWIVERHLKDGDFVLFNRQ 452
Query: 187 PTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSV 246
P+ HK S+ + V + T ++N + P ADFDGD +++ PQS +AE+ ++ V
Sbjct: 453 PSLHKMSMMSHRVRLMPYSTFRLNLSVTPPYNADFDGDEMNMHVPQSEETRAELSQVAWV 512
Query: 247 EKQLLSSHSGNLNLQLSTDSLLSL-KMLVKKGFMDRAAANQLAMFL---SLPLPRPALLK 302
+Q++S + + + D+L + K ++ F+D + +++ +P PA+LK
Sbjct: 513 PRQIISPQANKPVMGIVQDTLCGVRKFTLRDCFLDWNHVQNILLWVPDWDGTIPTPAILK 572
Query: 303 AGSGDSYWTSIQILQCALPLSFDCTGGR------------YLIRQSDILEFDLSRDVLPA 350
WT QIL +P + LI +++ + + + A
Sbjct: 573 P---KPLWTGKQILSMTIPRGINIHRSPDPKSSNPVFDDGMLIENGELIFGIVDKKTVGA 629
Query: 351 VINEIAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
+ VF KGP+ F LQ V+ +F NGFS+G+ D
Sbjct: 630 TQGGLVHVVFREKGPEVTRQLFTGLQRVVNFWLFHNGFSIGIGD 673
>K9ICM6_AGABB (tr|K9ICM6) DNA-directed RNA polymerase (Fragment) OS=Agaricus
bisporus var. bisporus (strain H97 / ATCC MYA-4626 /
FGSC 10389) GN=AGABI2DRAFT_215454 PE=3 SV=1
Length = 1800
Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 98/344 (28%), Positives = 163/344 (47%), Gaps = 41/344 (11%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDE 140
+++ + K FS+R+VITGD ++EVG+P IA +TF ERV +N+ +LQ+LV
Sbjct: 341 RLRGNLMGKRVDFSARTVITGDPNLELDEVGVPKSIAMNLTFPERVTPYNITYLQELV-- 398
Query: 141 NLCLAYKEGVSTY--------------SLREGSKGHTYLKPGQIVHRRIMDGDIVFINRP 186
+ G +TY LR + +L+ G IV R + DGD V NR
Sbjct: 399 ------RNGPTTYPGARYVVRDTGERIDLRYNKRADAFLQYGWIVERHLKDGDFVLFNRQ 452
Query: 187 PTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSV 246
P+ HK S+ + V + T ++N + P ADFDGD +++ PQS +AE+ ++ V
Sbjct: 453 PSLHKMSMMSHRVRLMPYSTFRLNLSVTPPYNADFDGDEMNMHVPQSEETRAELSQVAWV 512
Query: 247 EKQLLSSHSGNLNLQLSTDSLLSL-KMLVKKGFMDRAAANQLAMFL---SLPLPRPALLK 302
+Q++S + + + D+L + K ++ F+D + +++ +P PA+LK
Sbjct: 513 PRQIISPQANKPVMGIVQDTLCGVRKFTLRDCFLDWNHVQNILLWVPDWDGTIPTPAILK 572
Query: 303 AGSGDSYWTSIQILQCALPLSFDCTGGR------------YLIRQSDILEFDLSRDVLPA 350
WT QIL +P + LI +++ + + + A
Sbjct: 573 P---KPLWTGKQILSMTIPRGINIHRSPDPKSSNPVFDDGMLIENGELIFGIVDKKTVGA 629
Query: 351 VINEIAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
+ VF KGP+ F LQ V+ +F NGFS+G+ D
Sbjct: 630 TQGGLVHVVFREKGPEVTRQLFTGLQRVVNFWLFHNGFSIGIGD 673
>Q25312_LEIMA (tr|Q25312) DNA-directed RNA polymerase OS=Leishmania major
GN=RPOIILS PE=3 SV=3
Length = 1663
Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 105/361 (29%), Positives = 172/361 (47%), Gaps = 30/361 (8%)
Query: 55 KPARDIETHFGVNKELSDASN--KAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGI 112
KPA+ G K+L + K +++ + K FS+R+VITGD ++EVG+
Sbjct: 297 KPAK-----VGDTKKLKSLTERLKGKYGRLRGNLMGKRVDFSARTVITGDPNIDVDEVGV 351
Query: 113 PLEIAQRITFEERVNLHNMCFLQKLVDE------NLCLAYKEGVSTYSLREGSKGHTYLK 166
P +A +TF ERVN+ N L + V N + V+ +L + + +L
Sbjct: 352 PFSVAMTLTFPERVNVINKKRLTEFVQRTTYPSANYIIRPNGNVTKLALVK-DRSAVHLD 410
Query: 167 PGQIVHRRIMDGDIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCV 226
G +V R ++DGD+V NR PT H+ S+ V + + +T ++N P ADFDGD +
Sbjct: 411 VGDVVERHVIDGDVVLFNRQPTLHRMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEM 470
Query: 227 HLFYPQSLAAKAEVVELFSVEKQLLSSHSGNLNLQLSTDSLL-SLKMLVKKGFMDRAAAN 285
+L PQSL KAE++E+ V K +S + + + DS+L S K+ K F+D+
Sbjct: 471 NLHVPQSLLTKAELIEMMMVPKNFVSPNKSAPCMGIVQDSVLGSYKLTEKDTFLDKYFIA 530
Query: 286 QLAMFLSL-PLPRPALLKAGSGDSYWTSIQILQCALP-----------LSFDCTGGRYLI 333
+ ++L L LP P +LK WT QI LP F + +I
Sbjct: 531 ERPLWLDLWQLPIPTILKP---RPLWTGKQIFSLILPEVNHPASPHDKPPFPHNDSKIMI 587
Query: 334 RQSDILEFDLSRDVLPAVINEIAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLH 393
++ +L +++ V+ A + +F +G E F + +Q + + FSVG+
Sbjct: 588 QRGQLLGGAITKGVVGAAPGSLIHVIFNERGSDEVAKFINGVQRITTYFNYCFAFSVGVQ 647
Query: 394 D 394
D
Sbjct: 648 D 648
>Q9BJ59_LEPSE (tr|Q9BJ59) DNA-directed RNA polymerase OS=Leptomonas seymouri
GN=RNAPII PE=3 SV=1
Length = 1657
Score = 140 bits (354), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 108/361 (29%), Positives = 174/361 (48%), Gaps = 31/361 (8%)
Query: 55 KPARDIETHFGVNKELSDASN--KAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGI 112
KPA+ G K+L + K +++ + K FS+R+VITGD ++EVG+
Sbjct: 296 KPAK-----VGDTKKLKSLTERLKGKYGRLRGNLMGKRVDFSARTVITGDPNIDVDEVGV 350
Query: 113 PLEIAQRITFEERVNLHNMCFLQKLVDE------NLCLAYKEGVSTYSLREGSKGHTYLK 166
P IA +TF ERVN+ N L + V N + V+ +L + + +L
Sbjct: 351 PFSIAMTLTFPERVNVINKKRLTEFVQRSTYPSANYIMRPNGNVTKLALVK-DRSAVHLD 409
Query: 167 PGQIVHRRIMDGDIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCV 226
G +V R ++DGD+V NR PT H+ S+ V + + +T ++N P ADFDGD +
Sbjct: 410 VGDVVERHVIDGDVVLFNRQPTLHRMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEM 469
Query: 227 HLFYPQSLAAKAEVVELFSVEKQLLSSHSGNLNLQLSTDSLL-SLKMLVKKGFMDRAAAN 285
+L PQSL KAE++E+ V K +S + + + DSLL S ++ K F+D+
Sbjct: 470 NLHVPQSLLTKAELIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFVDKYFIQ 529
Query: 286 QLAMFLSL-PLPRPALLKAGSGDSYWTSIQILQCALPLSFDCTGGRY-----------LI 333
+A++L L LP PA+LK WT QI LP + Y +I
Sbjct: 530 SVALWLDLWELPIPAILKP---RPLWTGKQIFSLILP-EVNHPASPYGKPPFPHNDKKII 585
Query: 334 RQSDILEFDLSRDVLPAVINEIAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLH 393
++ +L +++ V+ A + +F +G E F + +Q + + FSVG+
Sbjct: 586 QRGLLLVGAITKGVVGAAPGSLIHVIFNERGSDEVAKFINGVQRITTYFNYCFAFSVGVQ 645
Query: 394 D 394
D
Sbjct: 646 D 646
>Q5S1Y0_9HOMO (tr|Q5S1Y0) DNA-directed RNA polymerase (Fragment) OS=Boletellus
projectellus GN=RPB1 PE=3 SV=2
Length = 997
Score = 140 bits (354), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 99/363 (27%), Positives = 173/363 (47%), Gaps = 48/363 (13%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDE 140
+++ + K FS+R+VITGD ++EVG+P IA +T+ ERV +N+ +LQ+LV
Sbjct: 251 RLRGNLMGKRVDFSARTVITGDPNLELDEVGVPRSIAMNLTYPERVTPYNIAYLQELV-- 308
Query: 141 NLCLAYKEGVSTY--------------SLREGSKGHTYLKPGQIVHRRIMDGDIVFINRP 186
+ G STY LR + +L+ G IV R + DGD V NR
Sbjct: 309 ------RNGPSTYPGARYVVRDTGERIDLRYNKRADAFLQYGWIVERHLKDGDFVLFNRQ 362
Query: 187 PTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSV 246
P+ HK S+ + V + T ++N + P ADFDGD +++ PQS +AE+ ++ V
Sbjct: 363 PSLHKMSMMSHRVKLMPYSTFRLNLSVTPPYNADFDGDEMNMHIPQSEETRAELSQIAWV 422
Query: 247 EKQLLSSHSGNLNLQLSTDSLLSL-KMLVKKGFMDRAAANQLAMFLSL---PLPRPALLK 302
+Q++S + + + D+L + K ++ F+D + +++ +P PA++K
Sbjct: 423 PRQIISPQANKPVMGIVQDTLCGIRKFTLRDTFLDWQQVQNILLWVPEWDGNVPTPAIIK 482
Query: 303 AGSGDSYWTSIQILQCALPLSFDCTGGR------------YLIRQSDILEFDLSRDVLPA 350
WT QI+ +P + ++ +IL + + + A
Sbjct: 483 P---KPLWTGKQIISMVIPRGINIHRAPEPKSSNPLFDDGMMVDNGEILFGIVDKKTVGA 539
Query: 351 VINEIAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDFSISGA------VKRV 404
+ VF KGP+ + F +Q V+ +F NGFS+G+ D +I+G +R+
Sbjct: 540 TQGGLIHVVFREKGPEATRSVFTGIQMVVNFWLFHNGFSIGIGD-TIAGPNVMEFITRRI 598
Query: 405 TDR 407
D+
Sbjct: 599 KDK 601
>F2TC89_AJEDA (tr|F2TC89) DNA-directed RNA polymerase OS=Ajellomyces dermatitidis
(strain ATCC 18188 / CBS 674.68) GN=BDDG_03793 PE=3 SV=1
Length = 1746
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 99/345 (28%), Positives = 167/345 (48%), Gaps = 36/345 (10%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDE 140
+++ + K FS+R+VITGD ++EVG+PL IAQ +T+ E V N+ L +LVD
Sbjct: 352 RLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPLSIAQTLTYPEVVTPFNIAKLGELVDN 411
Query: 141 NLCL------AYKEGVSTYSLR--EGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKH 192
+ + LR +G G +L+ G V R I+DGD++ NR P+ HK
Sbjct: 412 GPDIHPGARYVIRNTGERIDLRLHKGGGGRNFLQYGWRVERHIVDGDVILFNRQPSLHKE 471
Query: 193 SLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLS 252
S+ + + T ++N + P ADFDGD ++L PQS A+AE+ +L V Q++S
Sbjct: 472 SMMGHRIRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEEARAELSQLCMVPLQIVS 531
Query: 253 SHSGNLNLQLSTDSLLSL-KMLVKKGFMDRAAANQLAMFLSLP-----LPRPALLKAGSG 306
+ + D+L + K+ + F+ + + + L +P +P+PA+LK
Sbjct: 532 PQRNGPLMGIVQDTLCGIYKICSRDVFLTKEQI--MNILLWVPDWDGVIPQPAILKP--- 586
Query: 307 DSYWTSIQILQCALPLSFD-----------------CTGGRYLIRQSDILEFDLSRDVLP 349
WT Q++ LP + T G L+ +++ S+ +
Sbjct: 587 RPRWTGKQVISMVLPAGLNLLRVDRDKAPLSEKFSPLTDGGLLVHSGELMYGMFSKKTVG 646
Query: 350 AVINEIAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
A I ++F GP+ A+NFF+ Q V+ + +GFS+G+ D
Sbjct: 647 ATGGGIIHTIFNEYGPELAMNFFNGAQTVVNYWLLHHGFSIGIGD 691
>C5K0T9_AJEDS (tr|C5K0T9) DNA-directed RNA polymerase OS=Ajellomyces dermatitidis
(strain SLH14081) GN=BDBG_08433 PE=3 SV=1
Length = 1746
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 99/345 (28%), Positives = 167/345 (48%), Gaps = 36/345 (10%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDE 140
+++ + K FS+R+VITGD ++EVG+PL IAQ +T+ E V N+ L +LVD
Sbjct: 352 RLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPLSIAQTLTYPEVVTPFNIAKLGELVDN 411
Query: 141 NLCL------AYKEGVSTYSLR--EGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKH 192
+ + LR +G G +L+ G V R I+DGD++ NR P+ HK
Sbjct: 412 GPDIHPGARYVIRNTGERIDLRLHKGGGGRNFLQYGWRVERHIVDGDVILFNRQPSLHKE 471
Query: 193 SLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLS 252
S+ + + T ++N + P ADFDGD ++L PQS A+AE+ +L V Q++S
Sbjct: 472 SMMGHRIRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEEARAELSQLCMVPLQIVS 531
Query: 253 SHSGNLNLQLSTDSLLSL-KMLVKKGFMDRAAANQLAMFLSLP-----LPRPALLKAGSG 306
+ + D+L + K+ + F+ + + + L +P +P+PA+LK
Sbjct: 532 PQRNGPLMGIVQDTLCGIYKICSRDVFLTKEQI--MNILLWVPDWDGVIPQPAILKP--- 586
Query: 307 DSYWTSIQILQCALPLSFD-----------------CTGGRYLIRQSDILEFDLSRDVLP 349
WT Q++ LP + T G L+ +++ S+ +
Sbjct: 587 RPRWTGKQVISMVLPAGLNLLRVDRDKAPLSEKFSPLTDGGLLVHSGELMYGMFSKKTVG 646
Query: 350 AVINEIAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
A I ++F GP+ A+NFF+ Q V+ + +GFS+G+ D
Sbjct: 647 ATGGGIIHTIFNEYGPELAMNFFNGAQTVVNYWLLHHGFSIGIGD 691
>C5GKA7_AJEDR (tr|C5GKA7) DNA-directed RNA polymerase OS=Ajellomyces dermatitidis
(strain ER-3 / ATCC MYA-2586) GN=BDCG_04937 PE=3 SV=1
Length = 1746
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 99/345 (28%), Positives = 167/345 (48%), Gaps = 36/345 (10%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDE 140
+++ + K FS+R+VITGD ++EVG+PL IAQ +T+ E V N+ L +LVD
Sbjct: 352 RLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPLSIAQTLTYPEVVTPFNIAKLGELVDN 411
Query: 141 NLCL------AYKEGVSTYSLR--EGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKH 192
+ + LR +G G +L+ G V R I+DGD++ NR P+ HK
Sbjct: 412 GPDIHPGARYVIRNTGERIDLRLHKGGGGRNFLQYGWRVERHIVDGDVILFNRQPSLHKE 471
Query: 193 SLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLS 252
S+ + + T ++N + P ADFDGD ++L PQS A+AE+ +L V Q++S
Sbjct: 472 SMMGHRIRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEEARAELSQLCMVPLQIVS 531
Query: 253 SHSGNLNLQLSTDSLLSL-KMLVKKGFMDRAAANQLAMFLSLP-----LPRPALLKAGSG 306
+ + D+L + K+ + F+ + + + L +P +P+PA+LK
Sbjct: 532 PQRNGPLMGIVQDTLCGIYKICSRDVFLTKEQI--MNILLWVPDWDGVIPQPAILKP--- 586
Query: 307 DSYWTSIQILQCALPLSFD-----------------CTGGRYLIRQSDILEFDLSRDVLP 349
WT Q++ LP + T G L+ +++ S+ +
Sbjct: 587 RPRWTGKQVISMVLPAGLNLLRVDRDKAPLSEKFSPLTDGGLLVHSGELMYGMFSKKTVG 646
Query: 350 AVINEIAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
A I ++F GP+ A+NFF+ Q V+ + +GFS+G+ D
Sbjct: 647 ATGGGIIHTIFNEYGPELAMNFFNGAQTVVNYWLLHHGFSIGIGD 691
>A8Q5I6_MALGO (tr|A8Q5I6) DNA-directed RNA polymerase OS=Malassezia globosa
(strain ATCC MYA-4612 / CBS 7966) GN=MGL_2782 PE=3 SV=1
Length = 1607
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 98/339 (28%), Positives = 168/339 (49%), Gaps = 30/339 (8%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLV-- 138
+++ + K FS+R+VITGD +++VG+P IA+ +T+ ERV +N +L LV
Sbjct: 142 RLRGNLMGKRVDFSARTVITGDPNLELDQVGVPKSIARNLTYPERVTPYNRAYLSDLVRN 201
Query: 139 --DENLCLAY--KEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSL 194
+E Y ++ L+ +G L+ G IV R + DGD V NR P+ HK S+
Sbjct: 202 GPNEYPGARYVIRDTGERIDLKYNRRGDIALQAGWIVERHLRDGDYVLFNRQPSLHKMSM 261
Query: 195 QALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSH 254
A V + D T ++N + P ADFDGD ++L PQS A+AE+ ++ V +Q++S
Sbjct: 262 MAHRVKLMDYSTFRLNLSVTPPYNADFDGDEMNLHVPQSEEARAELAQIAWVPRQIVSPQ 321
Query: 255 SGNLNLQLSTDSLLSL-KMLVKKGFMDRAAANQLAMFLSLP-----LPRPALLKAGSGDS 308
+ + + D+L + K ++ MD + M+ LP +P+P +LK
Sbjct: 322 ANKPVMGIVQDTLCGVRKFTLRDCLMDYDQVQNILMW--LPGWDGIVPQPCILKP---KP 376
Query: 309 YWTSIQILQCALPLSFDCTGGRYLIRQSDILEFD----LSRDVLPAVINEIAAS------ 358
YW+ Q+L +P + G ++ ++ D + +++ VIN+
Sbjct: 377 YWSGKQLLSLCIPKGINVFLGDAKAASNNFVKDDGVHIENGEIMYGVINKKVVGSTAGGL 436
Query: 359 ---VFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
+F +GP +FF +Q V+ + NGFS+G+ D
Sbjct: 437 IHIIFRERGPVVCRDFFSGVQRVVNYWLLHNGFSIGIGD 475
>Q2PYR2_UMBRA (tr|Q2PYR2) DNA-directed RNA polymerase (Fragment) OS=Umbelopsis
ramanniana GN=RPB1 PE=3 SV=1
Length = 571
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 103/366 (28%), Positives = 168/366 (45%), Gaps = 45/366 (12%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDE 140
+++ + K FS+R+VITGD ++EVG+P IA+ +T+ E V +NM LQ LV
Sbjct: 100 RLRGNLMGKRVDFSARTVITGDPNLSVDEVGVPRSIARTLTYPEIVTPYNMDKLQTLVRN 159
Query: 141 NLCLAYKEGVSTYSLREGSK----------GHTYLKPGQIVHRRIMDGDIVFINRPPTTH 190
+ + Y +R+ + G L+ G V R I DGD+V NR P+ H
Sbjct: 160 G---PTEHPGAKYVIRDTGERIDLRYHKRAGEIPLQYGYKVERHINDGDVVIFNRQPSLH 216
Query: 191 KHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQL 250
K S+ + + T ++N + P ADFDGD ++L PQSL +AE+ E+ V KQ+
Sbjct: 217 KMSMMGHRIRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSLETRAEITEICMVPKQI 276
Query: 251 LSSHSGNLNLQLSTDSLLSLKMLVKK-GFMDRAAANQLAMFL---SLPLPRPALLKAGSG 306
+S S + + D+L + ++ F+ + + M++ LP PA+LK
Sbjct: 277 VSPQSNKPVMGIVQDTLAGVNKFTRRDSFLSKDLVMNIVMWVPDWDGYLPTPAILKP--- 333
Query: 307 DSYWTSIQILQCALPLSFDCT--------GGRYLIRQSDILEFDLSRDVLPAVINEIAAS 358
WT QIL +P +C G I D F + +++ ++ +
Sbjct: 334 KPMWTGKQILSMIIPKGINCQTFHFNHPDGETTWISPRDTRVFIENGELICGIVCKKTVG 393
Query: 359 VFFG---------KGPQEALNFFDVLQPVLMESIFSNGFSVGLHDF--------SISGAV 401
G +GP+ A NF + Q V+ + NGFS+G+ D +I+G +
Sbjct: 394 TASGGLIHTIMNEQGPEAAKNFLNGAQTVVNYWLLQNGFSIGIGDTIADRDTMENITGLI 453
Query: 402 KRVTDR 407
DR
Sbjct: 454 SSAKDR 459
>A1YIC1_BLAEM (tr|A1YIC1) DNA-directed RNA polymerase (Fragment)
OS=Blastocladiella emersonii GN=RPB1 PE=3 SV=1
Length = 1005
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 98/341 (28%), Positives = 166/341 (48%), Gaps = 30/341 (8%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLV-- 138
+++ + K FS+R+VITGD I++VG+P IA +T+ E V HN+ LQ++V
Sbjct: 256 RLRGNLMGKRVDFSARTVITGDPNLSIDQVGVPRSIALNLTYPEMVTRHNIRRLQEMVHR 315
Query: 139 --DENLCLAY--KEGVSTYSLR-EGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHS 193
+E+ Y + S LR G++G L+PG +V R + D D++ NR P+ HK S
Sbjct: 316 GAEEHPGAKYVIRPDGSRVDLRVSGAQGAPNLQPGWVVERHLSDNDVIIFNRQPSLHKMS 375
Query: 194 LQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSS 253
+ V + T ++N + P ADFDGD ++L PQS+ A+AE+ +L V Q++S
Sbjct: 376 MMGHKVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSVEARAEIQQLCMVPLQIVSP 435
Query: 254 HSGNLNLQLSTDSLLSLKMLVKKG-FMDRAAANQLAMFL---SLPLPRPALLKAGSGDSY 309
S + + D+L + ++ FMD+A L M++ +P PA+LK
Sbjct: 436 QSNKPVMGIVQDTLCGITKFTRRDTFMDKAMVMNLLMWVPGWDGNVPVPAILKP---KPL 492
Query: 310 WTSIQILQCALPL--------------SFDCTGG--RYLIRQSDILEFDLSRDVLPAVIN 353
WT QIL +P + D + G R ++ ++L + + +
Sbjct: 493 WTGKQILSLIIPKVNCITLHSTHPDGETTDISPGDTRVIVEDGELLAGIVCKKTVGTSAG 552
Query: 354 EIAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
+ + GP+ A + Q ++ + NGFS+G+ D
Sbjct: 553 GLVHVSWMEHGPEAAKALLNGCQTIVNHWLLHNGFSIGIGD 593
>A1YIC3_9FUNG (tr|A1YIC3) DNA-directed RNA polymerase (Fragment) OS=Entophlyctis
confervae-glomeratae GN=RPB1 PE=3 SV=1
Length = 1013
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 101/343 (29%), Positives = 166/343 (48%), Gaps = 32/343 (9%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVD- 139
+++ + K FS+R+VITGD + I++VG+P IA+ +TF E V +N+ +Q++V
Sbjct: 262 RLRGNLMGKRVDFSARTVITGDPHLSIDQVGVPRSIARNLTFPETVTPYNIHKMQQMVQN 321
Query: 140 ---ENLCLAY--KEGVSTYSLREGSKG-HTYLKPGQIVHRRIMDGDIVFINRPPTTHKHS 193
E+ Y K+ LR +G +L+PG V R +MD DIV NR P+ HK S
Sbjct: 322 GPTEHPGAKYVIKDDGQRIDLRYNRRGGDIHLQPGYRVERHLMDDDIVIFNRQPSLHKMS 381
Query: 194 LQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSS 253
+ V + T ++N + P ADFDGD ++L PQS KAE++EL V KQ++S
Sbjct: 382 MMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSYETKAELMELCMVPKQIVSP 441
Query: 254 HSGNLNLQLSTDSLLSLKMLVKKG-FMDRAAANQLAMFL---SLPLPRPALLKAGSGDSY 309
+ + D+L ++ K+ F+ + L M++ +P+PA++K
Sbjct: 442 QKNAPIMGIVQDTLCGIRKFTKRDTFLRQDLVMNLLMWVPDWDGTIPQPAIIKPV---PL 498
Query: 310 WTSIQILQCALPLSFDCTG------------------GRYLIRQSDILEFDLSRDVLPAV 351
WT QI+ LP + TG + LI ++L L + ++ +
Sbjct: 499 WTGKQIVSLILPAKINVTGMHTAYVQTPSNPEPDIPDCKVLIENGELLSGILDKSMVGSS 558
Query: 352 INEIAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
+ GP A FF+ Q V+ + +GFS+G+ D
Sbjct: 559 SGGVIHVAMNEYGPDVAKAFFNGCQTVVNYWLLQHGFSIGIGD 601
>A1YIB9_ALLMA (tr|A1YIB9) DNA-directed RNA polymerase (Fragment) OS=Allomyces
macrogynus GN=RPB1 PE=3 SV=1
Length = 1008
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 98/344 (28%), Positives = 166/344 (48%), Gaps = 36/344 (10%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDE 140
+++ + K FS+R+VITGD I++VG+P IA+ +T+ E V +N+ LQ+LV
Sbjct: 259 RLRGNLMGKRVDFSARTVITGDPNLSIDQVGVPRSIARNLTYPEIVTPYNINKLQELVHN 318
Query: 141 NLCLAYKEGVSTYSLRE----------GSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTH 190
+ + Y +R+ G+KG+ L+ G IV R + DGD++ NR P+ H
Sbjct: 319 G---PTQHPGAKYVIRDNGDRVDLRFIGAKGNLGLQYGWIVERHLDDGDVIIFNRQPSLH 375
Query: 191 KHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQL 250
K S+ V + T ++N + P ADFDGD +++ PQSL AKAE+ +L V Q+
Sbjct: 376 KMSMMGHKVKVMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSLEAKAEIQQLCMVPLQI 435
Query: 251 LSSHSGNLNLQLSTDSLLSLKMLVKKG-FMDRAAANQLAMFL---SLPLPRPALLKAGSG 306
+S S + + D+L + ++ FMD+ L M++ +P PA++K
Sbjct: 436 ISPQSNKPVMGIVQDTLCGITKFTRRDTFMDKNMVMNLLMWVPNWDGNVPPPAIMKP--- 492
Query: 307 DSYWTSIQILQCALPL--------------SFDCTGG--RYLIRQSDILEFDLSRDVLPA 350
WT QIL +P S D + G R ++ ++L + + + A
Sbjct: 493 KPLWTGKQILSLVIPKVNCITHHSTHPDDESTDISPGDTRVIVEDGELLAGIVCKKTVGA 552
Query: 351 VINEIAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
+ + GP+ A + Q ++ + NGFS+G+ D
Sbjct: 553 AAGGLVHVSWMEHGPEAAKALLNGCQTIVNYWLLHNGFSIGIGD 596
>M5ECE3_MALSM (tr|M5ECE3) Genomic scaffold, msy_sf_17 OS=Malassezia sympodialis
ATCC 42132 GN=MSY001_3022 PE=4 SV=1
Length = 1575
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 100/355 (28%), Positives = 176/355 (49%), Gaps = 26/355 (7%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLV-- 138
+++ + K FS+R+VITGD +++VG+P IA+ +T+ ERV +N +L LV
Sbjct: 350 RLRGNLMGKRVDFSARTVITGDPNLELDQVGVPKSIARNLTYPERVTPYNRAYLSDLVRN 409
Query: 139 --DENLCLAY--KEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSL 194
+E Y ++ L+ +G L+ G IV R + DGD V NR P+ HK S+
Sbjct: 410 GPNEYPGARYVIRDTGERIDLKYNRRGDIALQAGWIVERHLKDGDYVLFNRQPSLHKMSM 469
Query: 195 QALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSH 254
A V + D T ++N + P ADFDGD ++L PQS A+AE+ ++ V +Q++S
Sbjct: 470 MAHRVKLMDYSTFRLNLSVTPPYNADFDGDEMNLHVPQSEEARAELAQIAWVPRQIVSPQ 529
Query: 255 SGNLNLQLSTDSLLSL-KMLVKKGFMDRAAANQLAMFLSLP---LPRPALLKAGSGDSYW 310
+ + + D+L + K ++ +D + M+L+ +P+P +LK YW
Sbjct: 530 ANKPVMGIVQDTLCGIRKFTLRDCLLDFDQVQNVLMWLTDWDGIVPQPCILKP---KPYW 586
Query: 311 TSIQILQCALPLSFDCTGGRYLIRQSDILEFD----LSRDVLPAVINE--IAAS------ 358
+ Q+L +P + G ++ L+ D + +++ VIN+ + +S
Sbjct: 587 SGKQLLSMCIPKGINVFLGDAKAAANNFLKDDGVHIENGEIMYGVINKKVVGSSAGGLIH 646
Query: 359 -VFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDFSISGAVKRVTDRNIGKV 412
+F +GP +FF +Q ++ + NGFS+G+ D A ++ I K
Sbjct: 647 IIFRERGPVVCRDFFSGVQRLVNFWLLHNGFSIGIGDTVADKATTANINQTIAKA 701
>C0SE75_PARBP (tr|C0SE75) DNA-directed RNA polymerase OS=Paracoccidioides
brasiliensis (strain Pb03) GN=PABG_05980 PE=3 SV=1
Length = 2106
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 98/345 (28%), Positives = 167/345 (48%), Gaps = 36/345 (10%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDE 140
+++ + K FS+R+VITGD ++EVG+P+ IAQ +T+ E V N+ L +LVD
Sbjct: 352 RLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPISIAQTLTYPEVVTPFNIAKLGELVDN 411
Query: 141 NLCL------AYKEGVSTYSLR--EGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKH 192
+ + LR +G G +L+ G V R I+DGD++ NR P+ HK
Sbjct: 412 GPDIHPGARYVIRSTGERIDLRHHKGGGGRNFLQYGWRVERHIVDGDVILFNRQPSLHKE 471
Query: 193 SLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLS 252
S+ A V + T ++N + P ADFDGD ++L PQS A+AE+ +L V Q++S
Sbjct: 472 SMMAHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEEARAELSQLCMVPLQIVS 531
Query: 253 SHSGNLNLQLSTDSLLSLKMLVKKG-FMDRAAANQLAMFLSLP-----LPRPALLKAGSG 306
+ + D+L + + ++ F+ + + + L +P +P+PA+LK
Sbjct: 532 PQRNGPLMGIVQDTLCGIYKICRRDVFLSKEQV--MNILLWVPDWDGVIPQPAILKP--- 586
Query: 307 DSYWTSIQILQCALPLSFDC-----------------TGGRYLIRQSDILEFDLSRDVLP 349
WT Q++ LP + G L+ +++ S+ +
Sbjct: 587 RPRWTGKQLISMVLPPGLNLLRVDRDRAPRSEKFSPPADGGVLVHGGELMYGMFSKKTVG 646
Query: 350 AVINEIAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
A I ++F GP+ A+NFF+ Q V+ + +GFS+G+ D
Sbjct: 647 ATGGGIIHTIFNEYGPETAMNFFNGAQTVVNYWLLHHGFSIGIGD 691
>A1YIB1_9BASI (tr|A1YIB1) DNA-directed RNA polymerase (Fragment) OS=Phragmidium
sp. MB GN=RPB1 PE=3 SV=1
Length = 1013
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 95/337 (28%), Positives = 164/337 (48%), Gaps = 27/337 (8%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDE 140
+++ + K FS+R+VITGD ++++VG+P IA+ +T+ ERV +N+ +LQ+LV +
Sbjct: 272 RLRGNLMGKRVDFSARTVITGDPNLQLDQVGVPYSIARNLTYPERVTPYNISYLQELV-Q 330
Query: 141 NLCLAY-------KEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHS 193
N Y ++ L+ + T+L+ G IV R + DGD V NR P+ HK S
Sbjct: 331 NGPTEYPGARYVIRDTGDRIDLKYNKRADTFLQYGWIVERHLKDGDYVLFNRQPSLHKMS 390
Query: 194 LQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSS 253
+ A + + T ++N + P ADFDGD ++L PQS +AE+ ++ V + ++S
Sbjct: 391 MMAHRIKLMPYSTFRLNLSVTPPYNADFDGDEMNLHVPQSEETRAELAQIAWVPRNIVSP 450
Query: 254 HSGNLNLQLSTDSLLSL-KMLVKKGFMDRAAANQLAMFL---SLPLPRPALLKAGSGDSY 309
+ + + D+L + K ++ FMDR + +++ +P PA+LK
Sbjct: 451 QANKPVMGIVQDTLCGVRKFTLRDCFMDRDFVQNILLWVPGWDGVVPPPAILKP---KPL 507
Query: 310 WTSIQILQCALP------------LSFDCTGGRYLIRQSDILEFDLSRDVLPAVINEIAA 357
WT QIL +P S I +I+ + + + A I
Sbjct: 508 WTGKQILSMCIPKGINLFRDDENQTSIPVADKGMWIEDGEIIYGVVDKKTVGASQGGIIH 567
Query: 358 SVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
+F KGP+ F +Q V+ + +GFS+G+ D
Sbjct: 568 VIFREKGPEVTRGLFSGIQMVVNYWLLHHGFSIGIGD 604
>C1GHL1_PARBD (tr|C1GHL1) DNA-directed RNA polymerase OS=Paracoccidioides
brasiliensis (strain Pb18) GN=PADG_06747 PE=3 SV=1
Length = 1746
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 98/345 (28%), Positives = 167/345 (48%), Gaps = 36/345 (10%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDE 140
+++ + K FS+R+VITGD ++EVG+P+ IAQ +T+ E V N+ L +LVD
Sbjct: 352 RLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPISIAQTLTYPEVVTPFNIAKLGELVDN 411
Query: 141 NLCL------AYKEGVSTYSLR--EGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKH 192
+ + LR +G G +L+ G V R I+DGD++ NR P+ HK
Sbjct: 412 GPDIHPGARYVIRSTGERIDLRHHKGGGGRNFLQYGWRVERHIVDGDVILFNRQPSLHKE 471
Query: 193 SLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLS 252
S+ A V + T ++N + P ADFDGD ++L PQS A+AE+ +L V Q++S
Sbjct: 472 SMMAHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEEARAELSQLCMVPLQIVS 531
Query: 253 SHSGNLNLQLSTDSLLSLKMLVKKG-FMDRAAANQLAMFLSLP-----LPRPALLKAGSG 306
+ + D+L + + ++ F+ + + + L +P +P+PA+LK
Sbjct: 532 PQRNGPLMGIVQDTLCGIYKICRRDVFLSKEQV--MNILLWVPDWDGVIPQPAILKP--- 586
Query: 307 DSYWTSIQILQCALPLSFDC-----------------TGGRYLIRQSDILEFDLSRDVLP 349
WT Q++ LP + G L+ +++ S+ +
Sbjct: 587 RPRWTGKQLISMVLPPGLNLLRVDRDRAPRSEKFSPPADGGVLVHGGELMYGMFSKKTVG 646
Query: 350 AVINEIAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
A I ++F GP+ A+NFF+ Q V+ + +GFS+G+ D
Sbjct: 647 ATGGGIIHTIFNEYGPETAMNFFNGAQTVVNYWLLHHGFSIGIGD 691
>C1H3Q4_PARBA (tr|C1H3Q4) DNA-directed RNA polymerase OS=Paracoccidioides
brasiliensis (strain ATCC MYA-826 / Pb01) GN=PAAG_05397
PE=3 SV=1
Length = 1748
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 98/345 (28%), Positives = 167/345 (48%), Gaps = 36/345 (10%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDE 140
+++ + K FS+R+VITGD ++EVG+P+ IAQ +T+ E V N+ L +LVD
Sbjct: 358 RLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPISIAQTLTYPEVVTPFNIAKLGELVDN 417
Query: 141 NLCL------AYKEGVSTYSLR--EGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKH 192
+ + LR +G G +L+ G V R I+DGD++ NR P+ HK
Sbjct: 418 GPDIHPGARYVIRSTGERIDLRHHKGGGGRNFLQYGWRVERHIVDGDVILFNRQPSLHKE 477
Query: 193 SLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLS 252
S+ A V + T ++N + P ADFDGD ++L PQS A+AE+ +L V Q++S
Sbjct: 478 SMMAHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEEARAELSQLCMVPLQIVS 537
Query: 253 SHSGNLNLQLSTDSLLSLKMLVKKG-FMDRAAANQLAMFLSLP-----LPRPALLKAGSG 306
+ + D+L + + ++ F+ + + + L +P +P+PA+LK
Sbjct: 538 PQRNGPLMGIVQDTLCGIYKICRRDVFLSKEQV--MNILLWVPDWDGVIPQPAILKP--- 592
Query: 307 DSYWTSIQILQCALPLSFDC-----------------TGGRYLIRQSDILEFDLSRDVLP 349
WT Q++ LP + G L+ +++ S+ +
Sbjct: 593 RPRWTGKQLISMVLPPGLNLLRVDRDRAPRSEKFSPPADGGVLVHGGELMYGMFSKKTVG 652
Query: 350 AVINEIAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
A I ++F GP+ A+NFF+ Q V+ + +GFS+G+ D
Sbjct: 653 ATGGGIIHTIFNEYGPETAMNFFNGAQTVVNYWLLHHGFSIGIGD 697
>A1YIC0_9FUNG (tr|A1YIC0) DNA-directed RNA polymerase (Fragment) OS=Catenaria
anguillulae GN=RPB1 PE=3 SV=1
Length = 1020
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 100/376 (26%), Positives = 173/376 (46%), Gaps = 37/376 (9%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVD- 139
+++ + K FS+R+VITGD I++VG+P IA +T+ E V HN+ LQ+ V+
Sbjct: 271 RLRGNLMGKRVDFSARTVITGDPNLSIDQVGVPRSIASNLTYPEMVTRHNVNRLQEAVER 330
Query: 140 ---ENLCLAY---KEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHS 193
E+ Y +G G G L+PG IV R +MD D++ NR P+ HK S
Sbjct: 331 GPEEHPGAKYVIRPDGTRVDLRVTGVTGAPSLQPGWIVERHLMDDDVIIFNRQPSLHKMS 390
Query: 194 LQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSS 253
+ V + T ++N + P ADFDGD ++L PQS+ A+AE+ +L V Q++S
Sbjct: 391 MMGHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSVEARAEIQQLCMVPLQIVSP 450
Query: 254 HSGNLNLQLSTDSLLSLKMLVKKG-FMDRAAANQLAMFL---SLPLPRPALLKAGSGDSY 309
S + + D+L + ++ FMDRA L M++ +P PA++K
Sbjct: 451 QSNKPVMGIVQDTLCGITKFTRRDTFMDRAMVMNLLMWVPGWDGNMPPPAIVKP---KPM 507
Query: 310 WTSIQILQCALP----LSFDCT------------GGRYLIRQSDILEFDLSRDVLPAVIN 353
WT QI+ +P ++F T R ++ +++ + + +
Sbjct: 508 WTGKQIMSLIIPKVNAVTFHSTHPDGETDLLSPGDTRVIVEDGELVAGIVCKKTVGTAAG 567
Query: 354 EIAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVS 413
+ + GP+ A + Q ++ + GFSVG+ D D ++
Sbjct: 568 GLVHVSWMEHGPEAAKALLNGCQTIVNYWLLHTGFSVGIGDTV-------ADDETTDLIN 620
Query: 414 PLLYQLRFIYNELVAQ 429
+++ R NE++ +
Sbjct: 621 KMIFDARQRVNEIIGE 636
>A5H293_9LECA (tr|A5H293) DNA-directed RNA polymerase (Fragment) OS=Degelia
plumbea GN=RPB1 PE=3 SV=1
Length = 1002
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 104/351 (29%), Positives = 172/351 (49%), Gaps = 30/351 (8%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLV-- 138
+++ + K FS+R+VITGD ++EVG+P IA+ +T+ E V +N+ L +LV
Sbjct: 270 RLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKN 329
Query: 139 --DENLCLAY--KEGVSTYSLREGSK-GHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHS 193
+E+ Y +E LR + G L+ G V R I+DGD + NR P+ HK S
Sbjct: 330 GPNEHPGAKYVIRESGERIDLRHHKRAGEISLQYGWKVERHIIDGDFIIFNRQPSLHKES 389
Query: 194 LQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSS 253
+ V + T ++N + P ADFDGD ++L PQS +AE+ +L V ++S
Sbjct: 390 MMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCMVPLNIVSP 449
Query: 254 HSGNLNLQLSTDSLLSLKMLVKKG-FMDRAAANQLAMFLSLP-----LPRPALLKAGSGD 307
+ + D+L + L ++ F+ + + + L +P LP+PA+LK
Sbjct: 450 QRNGPLMGIVQDTLCGIYKLCRRDVFLSKEQV--MNILLWIPDWDGILPQPAILKP---R 504
Query: 308 SYWTSIQILQCALPLSFDCT--GGR---------YLIRQSDILEFDLSRDVLPAVINEIA 356
WT QI+ +P + T GG L+ ++ LS+ + A + I
Sbjct: 505 PKWTGKQIISLVIPSGLNLTRAGGEGFSPLNDDGLLVSGGKLMYGLLSKKSVGATSSGII 564
Query: 357 ASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD-FSISGAVKRVTD 406
+F KGP+ A+ FF+ Q V+ + NGFS+G+ D G +K++ D
Sbjct: 565 HIIFNEKGPEVAMKFFNGAQTVVNYWLLHNGFSIGIGDTIPDRGTIKQIKD 615
>M2N508_9PEZI (tr|M2N508) DNA-directed RNA polymerase OS=Baudoinia compniacensis
UAMH 10762 GN=BAUCODRAFT_85149 PE=3 SV=1
Length = 1789
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 103/343 (30%), Positives = 168/343 (48%), Gaps = 35/343 (10%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLV-- 138
+++ + K FS+R+VITGD +++VG+P IA+ +TF E VN +N+ LQ+LV
Sbjct: 353 RLRGNLMGKRVDFSARTVITGDPNLDLDQVGVPRSIAKTLTFPETVNAYNIQKLQELVRN 412
Query: 139 --DENLCLAY---KEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHS 193
+E+ Y EG LR +K L+ G V R I+DGD + NR P+ HK S
Sbjct: 413 GPNEHPGARYVIRGEG-ERIDLRR-AKNDVQLQYGWKVERHIVDGDYIIFNRQPSLHKES 470
Query: 194 LQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSS 253
+ V + T ++N + P ADFDGD ++L PQS +AEV EL +V K ++S
Sbjct: 471 MMGHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSHETRAEVSELCAVPKNIVSP 530
Query: 254 HSGNLNLQLSTDSLLSLKMLVKKGFMDRAAANQLAMFLSLP-----LPRPALLKAGSGDS 308
+ + D++ + M+ ++ M N + + L LP +P+PA+L+
Sbjct: 531 QKNGPLMGIVQDTMAGIYMMTRRDVM-IDYENVMNILLWLPNWDGVVPQPAILRP---KP 586
Query: 309 YWTSIQILQCALPLSFDCT--------------GGRYLIRQSDILEFDLSRDVLPAVINE 354
WT QI+ ALP + L++ D++ + ++ A
Sbjct: 587 MWTGKQIISLALPAGLNLQRMDDENTPHIPLKEKKGLLVQNGDLVLGRFVKKIVGASQGG 646
Query: 355 IAASVF---FGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
+ +F +GP+ A+ FF+ Q V+ + NGFSVG+ D
Sbjct: 647 VVHYIFNDNGSEGPKAAVEFFNAAQRVVCYWLLHNGFSVGIGD 689
>Q9C428_9FUNG (tr|Q9C428) DNA-directed RNA polymerase (Fragment) OS=Monoblepharis
macrandra GN=RPB1 PE=3 SV=1
Length = 1603
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 100/355 (28%), Positives = 166/355 (46%), Gaps = 33/355 (9%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLV-- 138
+++ + K FS+R+VITGD I+EVG+P I + +TF E VN +N LQKLV
Sbjct: 271 RLRGNLMGKRVDFSARTVITGDPNISIDEVGVPRSICRNLTFPEIVNDYNRDHLQKLVAN 330
Query: 139 ------DENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKH 192
N + + + GS G T L G V R ++DGD + NR P+ HK
Sbjct: 331 GTNEYPGANRVIRANGDIVSLKHTAGS-GETLLNIGDRVERHLVDGDYIIFNRQPSLHKM 389
Query: 193 SLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLS 252
S+ V + T ++N + P ADFDGD ++L PQS +AE++E+ V +Q++S
Sbjct: 390 SMMGHKVRVMPFSTFRLNLSVTSPYNADFDGDEMNLHAPQSYETRAEIMEIMRVPRQIIS 449
Query: 253 SHSGNLNLQLSTDSLLSL-KMLVKKGFMDRAAANQLAMFLS---LPLPRPALLKAGSGDS 308
+ + D+L + K ++ F+ R + M++ +P PA++K
Sbjct: 450 PKHNQPVMGIVQDTLCGIRKFTIRDNFLSRDMVMNILMWVEDWDGVIPLPAIVKP---VP 506
Query: 309 YWTSIQILQCALP----LSFDCT------------GGRYLIRQSDILEFDLSRDVLPAVI 352
WT Q++ A+P + F T + +I IL + + + +
Sbjct: 507 LWTGKQMMSLAIPDINLVGFSATHPDDEKGDMSVGDTKVIIEGGTILSGTMCKKTVGSSA 566
Query: 353 NEIAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDFSISG-AVKRVTD 406
+ ++ GP A FF+ Q ++ + NGFSVG+ D G ++ +TD
Sbjct: 567 GGVIHTIMNEHGPDAAKKFFNGTQKIVNYWLLHNGFSVGIGDTIADGVTMQSITD 621
>Q2PYQ2_9FUNG (tr|Q2PYQ2) DNA-directed RNA polymerase (Fragment)
OS=Monoblepharella sp. M15 GN=RPB1 PE=3 SV=1
Length = 547
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 103/354 (29%), Positives = 166/354 (46%), Gaps = 31/354 (8%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDE 140
+++ + K FS+R+VITGD I+EVG+P IA+ +TF E VN +N LQ+LV
Sbjct: 64 RLRGNLMGKRVDFSARTVITGDPNISIDEVGVPRSIARNLTFPEIVNDYNRERLQRLVAN 123
Query: 141 NLC------LAYKEGVSTYSLREGSK-GHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHS 193
+ G +LR S+ L G V R I+DGD V NR P+ HK S
Sbjct: 124 GYNEYPGANRVIRAGGDVINLRHASRTSDILLNVGDRVERHILDGDYVIFNRQPSLHKMS 183
Query: 194 LQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSS 253
+ V + T ++N + P ADFDGD ++L PQS +AE+ E+ V +Q++S
Sbjct: 184 MMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHAPQSYETRAEIQEIMQVPRQIISP 243
Query: 254 HSGNLNLQLSTDSLLSL-KMLVKKGFMDRAAANQLAMFL---SLPLPRPALLKAGSGDSY 309
+ + D+L + K ++ FM R + M++ +P PA++K
Sbjct: 244 KHNQPVMGIVQDTLCGIRKFTLRDNFMTRDMVMNILMWVDGWDGVVPAPAIIKP---TPL 300
Query: 310 WTSIQILQCALP----LSFDCT------------GGRYLIRQSDILEFDLSRDVLPAVIN 353
WT Q+L +P + F T + +I +I+ L + + +
Sbjct: 301 WTGKQLLSXIIPDVNLVGFAATHPDDERGDMSLADTKVIIEGGNIVAGILCKKTVGSSSG 360
Query: 354 EIAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDFSISGA-VKRVTD 406
+ ++ GP A FFD Q ++ + +GFSVG+ D GA ++ +TD
Sbjct: 361 GVVHTIMNEHGPDAAKKFFDGAQRIVNYWLLHHGFSVGIGDTIADGATMQSITD 414
>A1YIC6_NEOFR (tr|A1YIC6) DNA-directed RNA polymerase (Fragment)
OS=Neocallimastix frontalis GN=RPB1 PE=3 SV=1
Length = 1004
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 107/376 (28%), Positives = 175/376 (46%), Gaps = 38/376 (10%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDE 140
+++ + K FS+R+VITGD I++VG+P IA+ +TF E V N+ LQ+LV+
Sbjct: 255 RIRGNLMGKRVDFSARTVITGDPNISIDQVGVPRSIARNLTFPETVTPFNIDELQQLVNN 314
Query: 141 N------LCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSL 194
+K+ L+ G +L+ G V R I DGD+V NR P+ HK S+
Sbjct: 315 GPNEHPGAKYVFKDNGDRIDLKFARSGSVHLQVGYKVERHINDGDLVIFNRQPSLHKMSM 374
Query: 195 QALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSH 254
+ + T ++N + P ADFDGD ++L PQS KAEV E+ V KQ++S
Sbjct: 375 MGHKIKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSYETKAEVQEICMVPKQIVSPQ 434
Query: 255 SGNLNLQLSTDSLLSLKMLVKKG-FMDRAAANQLAMFL---SLPLPRPALLKAGSGDSYW 310
+ + + D+L ++ K+ F+ R + M++ +P P +LK W
Sbjct: 435 ANKPVMGIVQDTLCGIRKFTKRDCFLTRDFVMNIIMWVPDWDGVVPPPCILKP---IPLW 491
Query: 311 TSIQILQCALPL--------------SFDCTGG--RYLIRQSDILEFDLSRDVLPAVINE 354
T QI+ +P D + G + LI ++L L + + + N
Sbjct: 492 TGKQIMSLIIPKINIVGYHSTHPDNEDTDISPGDTKVLIENGELLAGILCKKTVGSSQNG 551
Query: 355 IAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDFSISGAVKRVTDRN-IGKVS 413
I V GP+ A FF+ Q V+ + NGFS+G+ D + DRN + ++
Sbjct: 552 IIHVVMNEYGPETAKLFFNGTQTVVNYWLLQNGFSIGIGD--------TIADRNTMETIN 603
Query: 414 PLLYQLRFIYNELVAQ 429
+ + NE++ Q
Sbjct: 604 KAIASAKQAVNEVILQ 619
>F8TBT6_9EUKA (tr|F8TBT6) DNA-directed RNA polymerase (Fragment) OS=Malawimonas
jakobiformis GN=Rpb1 PE=3 SV=1
Length = 1042
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 104/374 (27%), Positives = 172/374 (45%), Gaps = 41/374 (10%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDE 140
+++ + K FS+RSVIT D +NEVG+P IA +T+ E V N+ +++LV+
Sbjct: 271 RIRGNLMGKRVDFSARSVITADPNLSVNEVGVPRTIALNLTYPETVTPFNIQRMRQLVEN 330
Query: 141 NLCLAYKEGVSTYSLREGSKGHTY----------LKPGQIVHRRIMDGDIVFINRPPTTH 190
+K + Y +RE + L G V R I DGD+V NR PT H
Sbjct: 331 G---PHKHPGANYVIREDGERLDLRRIRDRSTVPLSYGWKVERHIHDGDVVVFNRQPTLH 387
Query: 191 KHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQL 250
K S+ V + T ++N + P ADFDGD ++L PQS +AE+ EL V + +
Sbjct: 388 KMSMMGHRVRVLPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSHETRAELEELMMVPRNI 447
Query: 251 LSSHSGNLNLQLSTDSLLSLKMLVKKG-FMDRAAANQLAMFLSL---PLPRPALLKAGSG 306
+S + + + DSLL K+ K+ F++R N M+L +P+PA+LK
Sbjct: 448 VSPQANKPVMGIVQDSLLGTKLFTKRDTFLERDLVNNTLMWLPSWDGHVPKPAILKP--- 504
Query: 307 DSYWTSIQILQCALPL-----------------SFDCTGGRYLIRQSDILEFDLSRDVLP 349
WT Q+ +P F + + I Q ++L + ++ +
Sbjct: 505 KQLWTGKQVFSLIVPPVNVLRKSIGAPDKEDNDDFTASDTKVRIEQGEVLSGIVCKNTVG 564
Query: 350 AVINEIAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDFSISGA----VKRVT 405
+ ++ G + NF D +Q V+ + + GFS+G+ D A + ++
Sbjct: 565 NASGSLVHIIWNELGHEATRNFLDSVQTVINYWLMNRGFSIGIGDTIADPATMQNITKII 624
Query: 406 DRNIGKVSPLLYQL 419
R+ +VS L+ QL
Sbjct: 625 GRSKQEVSDLITQL 638
>Q2PYP9_9FUNG (tr|Q2PYP9) DNA-directed RNA polymerase (Fragment)
OS=Neocallimastix sp. GE13 GN=RPB1 PE=3 SV=1
Length = 813
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 107/376 (28%), Positives = 175/376 (46%), Gaps = 38/376 (10%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDE 140
+++ + K FS+R+VITGD I++VG+P IA+ +TF E V N+ LQ+LV+
Sbjct: 69 RIRGNLMGKRVDFSARTVITGDPNISIDQVGVPRSIARNLTFPETVTPFNIDELQQLVNN 128
Query: 141 N------LCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSL 194
+K+ L+ G +L+ G V R I DGD+V NR P+ HK S+
Sbjct: 129 GPNEHPGAKYVFKDNGDRIDLKFARSGSVHLQVGYKVERHINDGDLVIFNRQPSLHKMSM 188
Query: 195 QALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSH 254
+ + T ++N + P ADFDGD ++L PQS KAEV E+ V KQ++S
Sbjct: 189 MGHKIKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSYETKAEVQEICMVPKQIVSPQ 248
Query: 255 SGNLNLQLSTDSLLSLKMLVKKG-FMDRAAANQLAMFL---SLPLPRPALLKAGSGDSYW 310
+ + + D+L ++ K+ F+ R + M++ +P P +LK W
Sbjct: 249 ANKPVMGIVQDTLCGIRKFTKRDCFLTRDFVMNIIMWVPDWDGVVPPPCILKP---IPLW 305
Query: 311 TSIQILQCALPL--------------SFDCTGG--RYLIRQSDILEFDLSRDVLPAVINE 354
T QI+ +P D + G + LI ++L L + + + N
Sbjct: 306 TGKQIMSLIIPKINIVGYHSTHPDNEDTDISPGDTKVLIENGELLAGILCKKTVGSSQNG 365
Query: 355 IAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDFSISGAVKRVTDRN-IGKVS 413
I V GP+ A FF+ Q V+ + NGFS+G+ D + DRN + ++
Sbjct: 366 IIHVVMNEYGPETAKLFFNGTQTVVNYWLLQNGFSIGIGD--------TIADRNTMETIN 417
Query: 414 PLLYQLRFIYNELVAQ 429
+ + NE++ Q
Sbjct: 418 KAIASAKQAVNEVILQ 433
>G3GC95_9ASCO (tr|G3GC95) DNA-directed RNA polymerase (Fragment)
OS=Archaeorhizomyces sp. FG15P2b GN=RPB1 PE=3 SV=1
Length = 727
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 100/339 (29%), Positives = 165/339 (48%), Gaps = 30/339 (8%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLV-- 138
+++ + K FS+R+VITGD ++EVG+P IA+ +T+ E V N+ LQ+LV
Sbjct: 259 RLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIAKTLTYPETVTPFNIHKLQELVRN 318
Query: 139 --DENLCLAY--KEGVSTYSLREGSKG-HTYLKPGQIVHRRIMDGDIVFINRPPTTHKHS 193
+E+ Y ++ LR +G L+ G V R ++DGD V NR P+ HK S
Sbjct: 319 GPNEHPGAKYVIRDTGERIDLRYHKRGGDINLQYGWRVERHVVDGDFVIFNRQPSLHKMS 378
Query: 194 LQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSS 253
+ V + T ++N P ADFDGD ++L PQS +AE+ E+ V KQ++S
Sbjct: 379 MMGHKVKVMPYSTFRLNLSCTSPYNADFDGDEMNLHVPQSEETRAEISEICMVPKQIVSP 438
Query: 254 HSGNLNLQLSTDSLLSLKMLVKK-GFMDRAAANQLAMFLSL---PLPRPALLKAGSGDSY 309
S + + D+L +++ K+ FM R A + M++ +P PA++K
Sbjct: 439 QSNKPVMGIVQDTLAAVRKFTKRDNFMSRDAVMNILMWVPEWDGVVPAPAIIKP---KPM 495
Query: 310 WTSIQILQCAL--------------PLSFDCTGGRYLIRQSDILEFDLSRDVLPAVINEI 355
WT QIL + P+ D G +I ++L + + + A +
Sbjct: 496 WTGKQILSMVIPQGINLVRDDENQSPIPLDDNG--IMIEHGELLYGIVDKRTVGASAGGL 553
Query: 356 AASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
+ KGP+ N+F+ +Q V+ + NGFS+G+ D
Sbjct: 554 VHVIMREKGPEVCCNWFNGMQRVINYWLLQNGFSIGIGD 592
>F4S9X8_MELLP (tr|F4S9X8) DNA-directed RNA polymerase OS=Melampsora
larici-populina (strain 98AG31 / pathotype 3-4-7)
GN=MELLADRAFT_50989 PE=3 SV=1
Length = 1786
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 95/337 (28%), Positives = 163/337 (48%), Gaps = 27/337 (8%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDE 140
+++ + K FS+R+VITGD ++++VG+P IA+ +T+ ERV +N+ +LQ+LV
Sbjct: 356 RLRGNLMGKRVDFSARTVITGDPNLQLDQVGVPYSIARNLTYPERVTPYNITYLQELV-R 414
Query: 141 NLCLAY-------KEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHS 193
N Y ++ LR + T+L+ G IV R + DGD V NR P+ HK S
Sbjct: 415 NGPTEYPGARYVVRDTGDRIDLRYNKRADTFLQYGWIVERHLKDGDYVLFNRQPSLHKMS 474
Query: 194 LQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSS 253
+ + + + T ++N + P ADFDGD ++L PQS +AE+ ++ V + ++S
Sbjct: 475 MMSHRIKLMPYSTFRLNLSVTPPYNADFDGDEMNLHVPQSEETRAELAQIAWVPRNIVSP 534
Query: 254 HSGNLNLQLSTDSLLSL-KMLVKKGFMDRAAANQLAMFL---SLPLPRPALLKAGSGDSY 309
+ + + D+L + K ++ FMDR + +++ +P PA+LK
Sbjct: 535 QANKPVMGIVQDTLCGVRKFTLRDCFMDRDFVQNILLWVPGWDGVVPPPAILKP---KPL 591
Query: 310 WTSIQILQCALP------------LSFDCTGGRYLIRQSDILEFDLSRDVLPAVINEIAA 357
WT QIL +P S I +I+ + + + A I
Sbjct: 592 WTGKQILSMCIPKGINLFRDDENQTSIPVADKGMWIEDGEIIYGVVDKKTVGASQGGIIH 651
Query: 358 SVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
+F KGP+ F +Q V+ + +GFS+G+ D
Sbjct: 652 VIFREKGPEVTRGLFSGIQMVVNYWLLHHGFSIGIGD 688
>Q2PYT2_ALLAR (tr|Q2PYT2) DNA-directed RNA polymerase (Fragment) OS=Allomyces
arbuscula GN=RPB1 PE=3 SV=1
Length = 739
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 97/344 (28%), Positives = 165/344 (47%), Gaps = 36/344 (10%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDE 140
+++ + K FS+R+VITGD I++VG+P IA+ +T+ E V +N+ LQ+LV
Sbjct: 255 RLRGNLMGKRVDFSARTVITGDPNLSIDQVGVPRSIARNLTYPEIVTPYNINKLQELVHN 314
Query: 141 NLCLAYKEGVSTYSLRE----------GSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTH 190
+ + Y +R+ G+KG+ L+ G IV R + DGD++ NR P+ H
Sbjct: 315 G---PTQHPGAKYVIRDNGDRVDLRFIGAKGNLGLQYGWIVERHLDDGDVIIFNRQPSLH 371
Query: 191 KHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQL 250
K S+ V + T ++N + P ADFDGD +++ PQ L AKAE+ +L V Q+
Sbjct: 372 KMSMMGHKVKVMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQPLEAKAEIQQLCMVPLQI 431
Query: 251 LSSHSGNLNLQLSTDSLLSLKMLVKKG-FMDRAAANQLAMFL---SLPLPRPALLKAGSG 306
+S S + + D+L + ++ FMD+ L M++ +P PA++K
Sbjct: 432 ISPQSNKPVMGIVQDTLCGITKFTRRDTFMDKNMVMNLLMWVPNWDRNVPPPAIMKP--- 488
Query: 307 DSYWTSIQILQCALPL--------------SFDCTGG--RYLIRQSDILEFDLSRDVLPA 350
WT QIL +P S D + G R ++ ++L + + + A
Sbjct: 489 KPLWTGKQILSLVIPKVNCITHHSTHPDDESTDISPGDTRVIVEDGELLAGIVCKKTVGA 548
Query: 351 VINEIAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
+ + GP+ A + Q ++ + NGFS+G+ D
Sbjct: 549 AAGGLVHVSWMEHGPEAAKALLNGCQTIVNYWLLHNGFSIGIGD 592
>G0UT19_TRYCI (tr|G0UT19) DNA-directed RNA polymerase OS=Trypanosoma congolense
(strain IL3000) GN=TCIL3000_8_7610 PE=3 SV=1
Length = 1754
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 103/338 (30%), Positives = 163/338 (48%), Gaps = 25/338 (7%)
Query: 76 KAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQ 135
K +++ + K FS+R+VITGD ++EVG+P +A +TF ERVN N L
Sbjct: 338 KGKYGRLRGNLMGKRVDFSARTVITGDPNIDVDEVGVPFSVAMTLTFPERVNTVNKKRLT 397
Query: 136 KLVDENLC-----LAYKEGVST--YSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPT 188
+ V + + + G T LR+ SK L G IV R +++GD+V NR PT
Sbjct: 398 EFVRREVYPSANYIHHPNGTITKLALLRDRSK--VTLNIGDIVERHVINGDVVLFNRQPT 455
Query: 189 THKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEK 248
H+ S+ V + + +T ++N P ADFDGD ++L PQSL KAE++E+ V K
Sbjct: 456 LHRMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPK 515
Query: 249 QLLSSHSGNLNLQLSTDSLLSLKMLVKKGFMDRAAANQLAMFLSL-PLPRPALLKAGSGD 307
+S S +L ++ S K F+D+ +A++L L LP PA+LK
Sbjct: 516 NFVSPTSQRRAWELCR-TVCSEATGDKDTFLDKYFVQSVALWLDLWQLPIPAVLKP---R 571
Query: 308 SYWTSIQILQCALP-----------LSFDCTGGRYLIRQSDILEFDLSRDVLPAVINEIA 356
WT Q+ LP F +IR+ ++L +++ ++ A +
Sbjct: 572 PLWTGKQVFSLILPEVNHPTTPHDKPPFPHNDSSVMIRRGELLCGPITKGIVGAAPGSLI 631
Query: 357 ASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
+F +G E F + +Q V + + GFSVG+ D
Sbjct: 632 HVIFNEQGSDEVARFINGVQRVTTFFLLNFGFSVGVQD 669
>E3L0Q1_PUCGT (tr|E3L0Q1) DNA-directed RNA polymerase OS=Puccinia graminis f. sp.
tritici (strain CRL 75-36-700-3 / race SCCL)
GN=PGTG_15953 PE=3 SV=2
Length = 1703
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 95/337 (28%), Positives = 164/337 (48%), Gaps = 27/337 (8%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDE 140
+++ + K FS+R+VITGD ++++VG+P IA+ +T+ ERV +N+ +LQ+LV +
Sbjct: 354 RLRGNLMGKRVDFSARTVITGDPNLQLDQVGVPYSIARNLTYPERVTPYNISYLQELV-Q 412
Query: 141 NLCLAY-------KEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHS 193
N Y ++ LR + T+L+ G IV R + DGD V NR P+ HK S
Sbjct: 413 NGPTEYPGARYVVRDTGDRIDLRYNKRADTFLQYGWIVERHLKDGDYVLFNRQPSLHKMS 472
Query: 194 LQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSS 253
+ + + + T ++N + P ADFDGD ++L PQS +AE+ ++ V + ++S
Sbjct: 473 MMSHRIKLMPYSTFRLNLSVTPPYNADFDGDEMNLHVPQSEETRAELAQIAWVPRNIVSP 532
Query: 254 HSGNLNLQLSTDSLLSL-KMLVKKGFMDRAAANQLAMFL---SLPLPRPALLKAGSGDSY 309
+ + + D+L + K ++ FMDR + +++ +P PA+LK
Sbjct: 533 QANKPVMGIVQDTLCGVRKFTLRDCFMDRDFVQNILLWVPGWDGVVPPPAILKP---KPL 589
Query: 310 WTSIQILQCALP------------LSFDCTGGRYLIRQSDILEFDLSRDVLPAVINEIAA 357
WT QIL +P S I +I+ + + + A +
Sbjct: 590 WTGKQILSMCIPKGINLLRDDENQTSIPIADKGLWIEDGEIVYGVVDKKCVGASQGGLIH 649
Query: 358 SVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
+F KGPQ F +Q V+ + +GFS+G+ D
Sbjct: 650 VIFREKGPQVTRGLFSGIQMVVNYWLLHHGFSIGIGD 686
>G3GC94_9ASCO (tr|G3GC94) DNA-directed RNA polymerase (Fragment)
OS=Archaeorhizomyces finlayi GN=RPB1 PE=3 SV=1
Length = 740
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 98/342 (28%), Positives = 163/342 (47%), Gaps = 36/342 (10%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDE 140
+++ + K FS+R+VITGD ++ VG+P IA+ +T+ E V N+ LQ+LV
Sbjct: 260 RLRGNLMGKRVDFSARTVITGDPNLSLDAVGVPRSIAKTLTYPETVTPFNIHKLQELVRN 319
Query: 141 NLCLAYKEGVSTYSLREGSK----------GHTYLKPGQIVHRRIMDGDIVFINRPPTTH 190
+ + Y +R+ + G L+ G V R I+DGD++ NR P+ H
Sbjct: 320 G---PNQHPGAKYVIRDTGERIDLRYHKRGGDINLQFGWRVERHIVDGDVIIFNRQPSLH 376
Query: 191 KHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQL 250
K S+ V + T ++N P ADFDGD ++L PQS +AEV E+ V KQ+
Sbjct: 377 KMSMMGHKVKVMPYSTFRLNLSCTSPYNADFDGDEMNLHVPQSEETRAEVTEICMVPKQI 436
Query: 251 LSSHSGNLNLQLSTDSLLSLKMLVKK-GFMDRAAANQLAMFLSL---PLPRPALLKAGSG 306
+S S + + D+L +++ K+ FM R A + M++ +P PA++K
Sbjct: 437 VSPQSNKPVMGIVQDTLAAVRKFTKRDNFMSREAVMNILMWVPEWDGVMPAPAIIKP--- 493
Query: 307 DSYWTSIQILQCAL--------------PLSFDCTGGRYLIRQSDILEFDLSRDVLPAVI 352
WT QIL + P+ D G +I ++L + + + A
Sbjct: 494 KEMWTGKQILSMVIPKGINLVRDDENQSPIPLDDNG--IMIEHGELLYGIVDKRTVGASA 551
Query: 353 NEIAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
+ + KGP+ N+F+ +Q V+ + NGFS+G+ D
Sbjct: 552 GGLVHVIMREKGPEVCCNWFNGMQRVINYWLLHNGFSIGIGD 593
>I0YN39_9CHLO (tr|I0YN39) DNA-directed RNA polymerase OS=Coccomyxa subellipsoidea
C-169 GN=COCSUDRAFT_38176 PE=3 SV=1
Length = 1328
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 91/240 (37%), Positives = 125/240 (52%), Gaps = 20/240 (8%)
Query: 93 FSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLV--------DENLCL 144
FS R+VI+ D INEVGIP+ +A +TF ERV HN+ LQK + N L
Sbjct: 314 FSGRTVISPDPNLAINEVGIPMHVAVILTFPERVTSHNISRLQKCIMNGPGVWPGANFVL 373
Query: 145 AYKEGVSTYSLREGSKGHTY--LKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALVVYIH 202
K+G + SL+ G + T LK G +V R + DGDIV NR P+ H+ S+ A I
Sbjct: 374 VAKDG-ARKSLKYGDRRRTAAELKIGDVVERHLRDGDIVLFNRQPSLHRMSIMAHRARIM 432
Query: 203 DDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHSGNLNLQL 262
T + N +C P ADFDGD +++ PQ+ A+AE EL V + L + SG + +
Sbjct: 433 PWRTFRFNECVCNPYNADFDGDEMNVHVPQTEEARAEASELMGVMRNLCTPKSGEILIAA 492
Query: 263 STDSLLSLKMLVKKG-FMDRAAANQLAMFL-----SLPLPRPALLKAGSGDSYWTSIQIL 316
+ D L S +L K F R QLA F+ ++ LP+PALLK WT Q+
Sbjct: 493 TQDFLTSAFLLTSKDRFYSRTQVAQLACFMGDGMDAVDLPQPALLKP---LELWTGKQLF 549
>A7J5B1_9LECA (tr|A7J5B1) DNA-directed RNA polymerase (Fragment) OS=Teloschistes
exilis GN=RPB1 PE=3 SV=1
Length = 1003
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 97/336 (28%), Positives = 168/336 (50%), Gaps = 27/336 (8%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLV-- 138
+++ + K FS+R+VITGD ++EVG+P IA+ +T+ E V +N+ L +LV
Sbjct: 259 RLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIAKTLTYPETVTPYNIQKLHQLVKN 318
Query: 139 --DENLCLAY--KEGVSTYSLREGSK-GHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHS 193
+E+ Y ++ LR + G L+ G V R I+DGD + NR P+ HK S
Sbjct: 319 GPNEHPGAKYVIRDSGERIDLRHHKRAGEISLQYGWKVERHIVDGDFIIFNRQPSXHKES 378
Query: 194 LQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSS 253
+ V + T ++N + P ADFDGD ++L PQS +AEV +L V ++S
Sbjct: 379 MMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVNQLCMVPLNIVSP 438
Query: 254 HSGNLNLQLSTDSLLSLKMLVKKG-FMDRAAANQLAMFLSLP-----LPRPALLKAGSGD 307
+ + + D+L + + ++ F+++ + + L +P +P+PA+LK
Sbjct: 439 QRNSPLMGIVQDTLCGIYKICRRDVFLNQEQV--MNILLWVPEWDGIIPQPAVLKP---T 493
Query: 308 SYWTSIQILQCALPLSFDCTGGR---------YLIRQSDILEFDLSRDVLPAVINEIAAS 358
WT QI+ +P + G + +++ L++ V+ A + I
Sbjct: 494 PLWTGKQIVSLVIPAGLNLVKGSDYAPLKDDGIFVSSGELMFGLLNKKVVGAAMGGIIHI 553
Query: 359 VFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
V+ KGP+ A+NFF+ Q V+ + NGFS+G+ D
Sbjct: 554 VYNEKGPEAAMNFFNGAQAVVNYWLLHNGFSIGIGD 589
>I7A0C5_SCHPM (tr|I7A0C5) DNA-directed RNA polymerase (Fragment)
OS=Schizosaccharomyces pombe PE=3 SV=1
Length = 868
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 103/351 (29%), Positives = 172/351 (49%), Gaps = 31/351 (8%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLV-- 138
+++ + K FS+R+VITGD ++E+G+P IA+ +T+ E V +N+ LQ+LV
Sbjct: 148 RLRGNLMGKRVDFSARTVITGDPNLSLDELGVPRSIAKTLTYPETVTPYNIYQLQELVRN 207
Query: 139 --DENLCLAY--KEGVSTYSLREGSK-GHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHS 193
DE+ Y ++ LR + G L+ G V R I DGD+V NR P+ HK S
Sbjct: 208 GPDEHPGAKYIIRDTGERIDLRYHKRAGDIPLRYGWRVERHIRDGDVVIFNRQPSLHKMS 267
Query: 194 LQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSS 253
+ + + T ++N + P ADFDGD +++ PQS +AE+ E+ V KQ++S
Sbjct: 268 MMGHRIRVMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSEETRAEIQEITMVPKQIVSP 327
Query: 254 HSGNLNLQLSTDSLLSL-KMLVKKGFMDRAAANQLAMFLSLP-----LPRPALLKAGSGD 307
S + + D+L + K ++ F+ R A + + L +P LP P +LK
Sbjct: 328 QSNKPVMGIVQDTLAGVRKFSLRDNFLTRNAV--MNIMLWVPDWDGILPPPVILKP---K 382
Query: 308 SYWTSIQILQCALPLSFDC------------TGGRYLIRQSDILEFDLSRDVLPAVINEI 355
WT QIL +P + T LI +I+ + + + A +
Sbjct: 383 VLWTGKQILSLIIPKGINLIRDDDKQSLSNPTDSGMLIENGEIIYGVVDKKTVGASQGGL 442
Query: 356 AASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD-FSISGAVKRVT 405
+++ KGP+ FF+ +Q V+ + NGFS+G+ D + + +K VT
Sbjct: 443 VHTIWKEKGPEICKGFFNGIQRVVNYWLLHNGFSIGIGDTIADADTMKEVT 493
>F8S1G5_9EUGL (tr|F8S1G5) DNA-directed RNA polymerase (Fragment) OS=Parabodo
caudatus GN=RPB1 PE=3 SV=1
Length = 1035
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 101/338 (29%), Positives = 164/338 (48%), Gaps = 27/338 (7%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDE 140
+++ + K FS+R+VITGD ++EVG+P +A +TF ERVN N L ++V
Sbjct: 233 RLRGNLMGKRVNFSARTVITGDPNIDVDEVGVPFSVAMTLTFPERVNHLNRHRLTQIVRS 292
Query: 141 NLCLAYKEGVSTYS-------LREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHS 193
+ + VS ++ + L+ G IV R++++GD+V NR PT H+ S
Sbjct: 293 SQYPSANAIVSNSGTVWRLNGMKPERRQQLTLEIGDIVERQVLNGDVVLFNRQPTLHRMS 352
Query: 194 LQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSS 253
+ V + + +T ++N P ADFDGD ++L PQSL KAE++E+ V K +S
Sbjct: 353 MMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSP 412
Query: 254 HSGNLNLQLSTDSLL-SLKMLVKKGFMDRAAANQLAMFLS--LP----LPRPALLKAGSG 306
+ + + DSLL S ++ K+ F+D+ + M+LS +P LP PA+LK
Sbjct: 413 NKSAPCMGIVQDSLLGSWRITDKEVFLDKYFVQNVFMWLSDLIPSLTELPIPAILKP--- 469
Query: 307 DSYWTSIQ----------ILQCALPLSFDCTGGRYLIRQSDILEFDLSRDVLPAVINEIA 356
WT Q I + L SF LIR D+L + + ++ A
Sbjct: 470 RPLWTGKQMFSLILRETNITRENLKKSFPHDDAGTLIRNGDVLVGQVDKGLIGASPGSFI 529
Query: 357 ASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
+F +G F + +Q + ++ FSVG+ D
Sbjct: 530 HVIFNDRGSDAVAQFINGVQRLTTHYLYHFSFSVGVQD 567
>K4N3B4_9EUKA (tr|K4N3B4) DNA-directed RNA polymerase OS=Amoeboaphelidium
protococcarum GN=RPB1 PE=3 SV=1
Length = 1767
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 115/400 (28%), Positives = 181/400 (45%), Gaps = 53/400 (13%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVD- 139
+++ + K FS+R+VITGD ++EVG+P IA+ +TF E V N LQ+ VD
Sbjct: 341 RLRGNLMGKRVDFSARTVITGDPNISLDEVGVPRTIAKTLTFPEIVTPFNFQQLQEAVDN 400
Query: 140 ---ENLCLAY--KEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSL 194
E+ Y ++ L L G V R I DGDIV NR P+ HK S+
Sbjct: 401 GPNEHPGARYVIRQNGDRIDLSRAGAIELQLNVGDKVERHIRDGDIVLFNRQPSLHKMSM 460
Query: 195 QALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSH 254
V + T ++N + P ADFDGD ++L PQS KAE+ E+ V +Q++S
Sbjct: 461 MGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSYETKAELSEICMVPRQIVSPQ 520
Query: 255 SGNLNLQLSTDSLLSLKMLVKK-GFMDRAAANQLAMFL---SLPLPRPALLKAGSGDSYW 310
+ + + D+L ++ K+ F+ + L M++ LP+PA++K W
Sbjct: 521 ANRPVMGIVQDTLCGVRKFTKRDSFLTKEMVMSLCMWVRDWDGQLPQPAIIKPV---PLW 577
Query: 311 TSIQILQCALPLSFDCTGGRYLIRQSDILEFDLSRDVLPAVI------------------ 352
T QI +P + G Y + D D+S VI
Sbjct: 578 TGKQIFSLIIPPGTNMIG--YHSQHPDNESSDISPGDTKVVIYDGELVCGIICKKTVGTS 635
Query: 353 -NEIAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD------------FSISG 399
N + ++ GP++ NFFD Q V+ +FS GFS+G+ D +IS
Sbjct: 636 QNSLIHVIWKEHGPEKTRNFFDGCQAVVNNWLFSYGFSIGIGDTIADAQTMQVVATTISN 695
Query: 400 AVKRVTD------RNIGKVSPLLYQLRFIYNELVAQQLEK 433
A +VT+ RN+ + SP + ++ + V Q+L +
Sbjct: 696 AKNKVTEYISQAHRNVLQPSPGM-TIQESFESRVNQELNR 734
>F8QG95_SERL3 (tr|F8QG95) DNA-directed RNA polymerase OS=Serpula lacrymans var.
lacrymans (strain S7.3) GN=SERLA73DRAFT_98944 PE=3 SV=1
Length = 1741
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 99/340 (29%), Positives = 165/340 (48%), Gaps = 33/340 (9%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDE 140
+++ + K FS+R+VITGD ++EVG+P IA +T+ ERV +N+ +LQ+LV
Sbjct: 344 RLRGNLMGKRVDFSARTVITGDPNLELDEVGVPRSIAMNLTYPERVTPYNIAYLQELV-R 402
Query: 141 NLCLAY-------KEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHS 193
N AY ++ LR + +L+ G IV R + DGD V NR P+ HK S
Sbjct: 403 NGPTAYPGARYVVRDTGERIDLRYNKRADAFLQYGWIVERHLKDGDFVLFNRQPSLHKMS 462
Query: 194 LQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSS 253
+ + V + T ++N + P ADFDGD +++ PQS +AE+ ++ V +Q++S
Sbjct: 463 MMSHRVKLMPYSTFRLNLSVTPPYNADFDGDEMNMHVPQSEETRAELSQIAWVPRQIISP 522
Query: 254 HSGNLNLQLSTDSLLSL-KMLVKKGFMDRAAANQLA-MFLSLP-----LPRPALLKAGSG 306
+ + + D+L + K ++ F+D NQ+ + L +P +P P+++K
Sbjct: 523 QANKPVMGIVQDTLCGIRKFTLRDTFLD---WNQVQNILLWVPDWDGNVPIPSIIKP--- 576
Query: 307 DSYWTSIQILQCALPLSFDCTGGR------------YLIRQSDILEFDLSRDVLPAVINE 354
WT QIL +P + LI +I+ + + + A
Sbjct: 577 KPLWTGKQILSMVIPRGINIHRAPEPKSSNPVFDDGMLIENGEIVFGIVEKKTVGASQGG 636
Query: 355 IAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
+ VF KGP F +Q V+ +F NGFS+G+ D
Sbjct: 637 LVHVVFREKGPDATRQIFTGIQMVVNFWLFHNGFSIGIGD 676
>F8PAY6_SERL9 (tr|F8PAY6) DNA-directed RNA polymerase OS=Serpula lacrymans var.
lacrymans (strain S7.9) GN=SERLADRAFT_453400 PE=3 SV=1
Length = 1744
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 99/340 (29%), Positives = 165/340 (48%), Gaps = 33/340 (9%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDE 140
+++ + K FS+R+VITGD ++EVG+P IA +T+ ERV +N+ +LQ+LV
Sbjct: 347 RLRGNLMGKRVDFSARTVITGDPNLELDEVGVPRSIAMNLTYPERVTPYNIAYLQELV-R 405
Query: 141 NLCLAY-------KEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHS 193
N AY ++ LR + +L+ G IV R + DGD V NR P+ HK S
Sbjct: 406 NGPTAYPGARYVVRDTGERIDLRYNKRADAFLQYGWIVERHLKDGDFVLFNRQPSLHKMS 465
Query: 194 LQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSS 253
+ + V + T ++N + P ADFDGD +++ PQS +AE+ ++ V +Q++S
Sbjct: 466 MMSHRVKLMPYSTFRLNLSVTPPYNADFDGDEMNMHVPQSEETRAELSQIAWVPRQIISP 525
Query: 254 HSGNLNLQLSTDSLLSL-KMLVKKGFMDRAAANQLA-MFLSLP-----LPRPALLKAGSG 306
+ + + D+L + K ++ F+D NQ+ + L +P +P P+++K
Sbjct: 526 QANKPVMGIVQDTLCGIRKFTLRDTFLD---WNQVQNILLWVPDWDGNVPIPSIIKP--- 579
Query: 307 DSYWTSIQILQCALPLSFDCTGGR------------YLIRQSDILEFDLSRDVLPAVINE 354
WT QIL +P + LI +I+ + + + A
Sbjct: 580 KPLWTGKQILSMVIPRGINIHRAPEPKSSNPVFDDGMLIENGEIVFGIVEKKTVGASQGG 639
Query: 355 IAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
+ VF KGP F +Q V+ +F NGFS+G+ D
Sbjct: 640 LVHVVFREKGPDATRQIFTGIQMVVNFWLFHNGFSIGIGD 679
>E9CY52_COCPS (tr|E9CY52) DNA-directed RNA polymerase OS=Coccidioides posadasii
(strain RMSCC 757 / Silveira) GN=CPSG_02722 PE=3 SV=1
Length = 1750
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 98/345 (28%), Positives = 166/345 (48%), Gaps = 36/345 (10%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDE 140
+++ + K FS+R+VITGD ++EVG+P+ IAQ +T+ E V +N+ L +LVD
Sbjct: 352 RLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPVSIAQTLTYPEVVTPYNINKLGQLVDN 411
Query: 141 NLCL------AYKEGVSTYSLR--EGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKH 192
+ + LR +G G +L+ G V R +MDGD++ NR P+ HK
Sbjct: 412 GPDVHPGARYVIRSSGERIDLRHHKGGGGRNFLQWGWRVERHLMDGDVILFNRQPSLHKE 471
Query: 193 SLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLS 252
S+ A V + T ++N + P ADFDGD ++L PQS A+AE+ +L V ++S
Sbjct: 472 SMMAHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEEARAELNQLCLVPLNIVS 531
Query: 253 SHSGNLNLQLSTDSLLSLKMLVKKG-FMDRAAANQLAMFLSLP-----LPRPALLKAGSG 306
+ + D+L + + ++ F+ + + M L +P LP+PA+LK
Sbjct: 532 PQRNGPLMGIVQDTLCGIYKICRRDVFLTKEQV--MNMMLWVPEWDGVLPQPAILKP--- 586
Query: 307 DSYWTSIQILQCALPLSFD-----------------CTGGRYLIRQSDILEFDLSRDVLP 349
WT Q++ LP + T L+ +++ S+ +
Sbjct: 587 RPRWTGKQMISMVLPSGLNLLRVDRDKVPLAEKFSPLTDTGLLVHGGELMYGMFSKKTVG 646
Query: 350 AVINEIAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
A I +++ GP+ +NFF+ Q V+ + NGFS+G+ D
Sbjct: 647 ATGGGIIHTIYNEYGPEVCMNFFNGAQTVVNYWLLHNGFSIGIGD 691
>J4IAY2_FIBRA (tr|J4IAY2) DNA-directed RNA polymerase OS=Fibroporia radiculosa
(strain TFFH 294) GN=FIBRA_05852 PE=3 SV=1
Length = 1621
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 102/352 (28%), Positives = 167/352 (47%), Gaps = 57/352 (16%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDE 140
+++ + K FS+R+VITGD ++EVG+P IA +TF ERV +N+ +LQ+LV
Sbjct: 199 RLRGNLMGKRVDFSARTVITGDPNLDLDEVGVPKSIAMNLTFPERVTPYNIAYLQELV-- 256
Query: 141 NLCLAYKEGVSTY--------------SLREGSKGHTYLKPGQIVHRRIMDGDIVFINRP 186
+ G +TY LR + +L+ G IV R + DGD V NR
Sbjct: 257 ------RNGPTTYPGARYVVRDTGERIDLRYNKRADAFLQYGWIVERHLRDGDFVLFNRQ 310
Query: 187 PTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSV 246
P+ HK S+ + V + T ++N + P ADFDGD +++ PQS +AE+ ++ V
Sbjct: 311 PSLHKMSMMSHRVKLMPYSTFRLNLSVTPPYNADFDGDEMNMHVPQSEETRAELSQIAWV 370
Query: 247 EKQLLSSHSGNLNLQLSTDSLLSL-KMLVKKGFMDRAAANQLAMFL-----SLPLPRPAL 300
+Q++S + + + D+L + K ++ F+D + +++ S+PL P +
Sbjct: 371 PRQIISPQANKPVMAIVQDTLCGIRKFTLRDTFLDWNQVQNILLWVPDWDGSVPL--PTV 428
Query: 301 LKAGSGDSYWTSIQILQCALPLSFDCTGGRYLIRQSDILEFDLSRD---------VLPAV 351
+K WT QIL +P + + R D F+ D +L V
Sbjct: 429 IKP---KPLWTGKQILSMCIPRGIN------IYRSPDPKSFNPVFDDGMNIENGEILFGV 479
Query: 352 INE--IAAS-------VFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
+ + + AS F KGP+ F LQ V+ +F NGFS+G+ D
Sbjct: 480 VEKKTVGASQGGLIHITFREKGPEVTRALFSGLQQVVNYWLFHNGFSIGIGD 531
>K1W5F5_TRIAC (tr|K1W5F5) DNA-directed RNA polymerase OS=Trichosporon asahii var.
asahii (strain CBS 8904) GN=A1Q2_01613 PE=3 SV=1
Length = 1771
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 98/340 (28%), Positives = 166/340 (48%), Gaps = 31/340 (9%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDE 140
+++ + K FS+R+VITGD ++++VG+P IA +T+ ERV +N+ +LQ+L+
Sbjct: 341 RLRGNLMGKRVDFSARTVITGDPNLQLDQVGVPRSIAMTLTYPERVTPYNINYLQQLI-- 398
Query: 141 NLCLAYKEGVSTYSLREGSK-GHTYLKPGQ--------IVHRRIMDGDIVFINRPPTTHK 191
N A G Y G + Y K G+ IV R + DGD V NR P+ HK
Sbjct: 399 NNGPATYPGARYYVKDTGERIDLKYRKSGEPIPLQFGWIVERHLKDGDYVLFNRQPSLHK 458
Query: 192 HSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLL 251
S+ + V + + T ++N + P ADFDGD ++L PQS +AE+ ++ V +Q++
Sbjct: 459 MSMMSHRVKVMNYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQIAWVPRQII 518
Query: 252 SSHSGNLNLQLSTDSLLSL-KMLVKKGFMDRAAANQLAMFL---SLPLPRPALLKAGSGD 307
S + + + D+L + K ++ F D A L ++L +P PA+LK
Sbjct: 519 SPQANKPVMGIVQDTLCGVRKFTLRDNFCDWAFVQNLLLWLPDWDGTIPPPAILKP---R 575
Query: 308 SYWTSIQILQCALPLS-------------FDCTGGRYLIRQSDILEFDLSRDVLPAVINE 354
WT Q++ +P D T L+ +++ +++ + A N
Sbjct: 576 PMWTGKQLVSMCIPKGINIAAHDNERPSPIDVTDQNVLVDNGELVYGTITKSMAGAASNG 635
Query: 355 IAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
+ +F G +A +FF +Q V+ + NGFSVG+ D
Sbjct: 636 LIHVIFRELGHIKARDFFSAMQRVINFWLLHNGFSVGIGD 675
>J3KB55_COCIM (tr|J3KB55) DNA-directed RNA polymerase OS=Coccidioides immitis
(strain RS) GN=CIMG_03244 PE=3 SV=1
Length = 1750
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 98/345 (28%), Positives = 166/345 (48%), Gaps = 36/345 (10%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDE 140
+++ + K FS+R+VITGD ++EVG+P+ IAQ +T+ E V +N+ L +LVD
Sbjct: 352 RLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPVSIAQTLTYPEVVTPYNINKLGQLVDN 411
Query: 141 NLCL------AYKEGVSTYSLR--EGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKH 192
+ + LR +G G +L+ G V R +MDGD++ NR P+ HK
Sbjct: 412 GPDVHPGARYVIRSSGERIDLRHHKGGGGRNFLQWGWRVERHLMDGDVILFNRQPSLHKE 471
Query: 193 SLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLS 252
S+ A V + T ++N + P ADFDGD ++L PQS A+AE+ +L V ++S
Sbjct: 472 SMMAHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEEARAELNQLCLVPLNIVS 531
Query: 253 SHSGNLNLQLSTDSLLSLKMLVKKG-FMDRAAANQLAMFLSLP-----LPRPALLKAGSG 306
+ + D+L + + ++ F+ + + M L +P LP+PA+LK
Sbjct: 532 PQRNGPLMGIVQDTLCGIYKICRRDVFLTKEQV--MNMMLWVPEWDGVLPQPAILKP--- 586
Query: 307 DSYWTSIQILQCALPLSFD-----------------CTGGRYLIRQSDILEFDLSRDVLP 349
WT Q++ LP + T L+ +++ S+ +
Sbjct: 587 RPRWTGKQMISMVLPSGLNLLRVDRDKVPLAEKFSPLTDTGLLVHGGELMYGMFSKKTVG 646
Query: 350 AVINEIAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
A I +++ GP+ +NFF+ Q V+ + NGFS+G+ D
Sbjct: 647 ATGGGIIHTIYNEYGPEVCMNFFNGAQTVVNYWLLHNGFSIGIGD 691
>C5PAJ4_COCP7 (tr|C5PAJ4) DNA-directed RNA polymerase OS=Coccidioides posadasii
(strain C735) GN=CPC735_009320 PE=3 SV=1
Length = 1746
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 98/345 (28%), Positives = 166/345 (48%), Gaps = 36/345 (10%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDE 140
+++ + K FS+R+VITGD ++EVG+P+ IAQ +T+ E V +N+ L +LVD
Sbjct: 352 RLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPVSIAQTLTYPEVVTPYNINKLGQLVDN 411
Query: 141 NLCL------AYKEGVSTYSLR--EGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKH 192
+ + LR +G G +L+ G V R +MDGD++ NR P+ HK
Sbjct: 412 GPDVHPGARYVIRSSGERIDLRHHKGGGGRNFLQWGWRVERHLMDGDVILFNRQPSLHKE 471
Query: 193 SLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLS 252
S+ A V + T ++N + P ADFDGD ++L PQS A+AE+ +L V ++S
Sbjct: 472 SMMAHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEEARAELNQLCLVPLNIVS 531
Query: 253 SHSGNLNLQLSTDSLLSLKMLVKKG-FMDRAAANQLAMFLSLP-----LPRPALLKAGSG 306
+ + D+L + + ++ F+ + + M L +P LP+PA+LK
Sbjct: 532 PQRNGPLMGIVQDTLCGIYKICRRDVFLTKEQV--MNMMLWVPEWDGVLPQPAILKP--- 586
Query: 307 DSYWTSIQILQCALPLSFD-----------------CTGGRYLIRQSDILEFDLSRDVLP 349
WT Q++ LP + T L+ +++ S+ +
Sbjct: 587 RPRWTGKQMISMVLPSGLNLLRVDRDKVPLAEKFSPLTDTGLLVHGGELMYGMFSKKTVG 646
Query: 350 AVINEIAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
A I +++ GP+ +NFF+ Q V+ + NGFS+G+ D
Sbjct: 647 ATGGGIIHTIYNEYGPEVCMNFFNGAQTVVNYWLLHNGFSIGIGD 691
>J4U7H4_TRIAS (tr|J4U7H4) DNA-directed RNA polymerase OS=Trichosporon asahii var.
asahii (strain ATCC 90039 / CBS 2479 / JCM 2466 / KCTC
7840 / NCYC 2677 / UAMH 7654) GN=A1Q1_05094 PE=3 SV=1
Length = 1787
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 98/340 (28%), Positives = 166/340 (48%), Gaps = 31/340 (9%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDE 140
+++ + K FS+R+VITGD ++++VG+P IA +T+ ERV +N+ +LQ+L+
Sbjct: 341 RLRGNLMGKRVDFSARTVITGDPNLQLDQVGVPRSIAMTLTYPERVTPYNINYLQQLI-- 398
Query: 141 NLCLAYKEGVSTYSLREGSK-GHTYLKPGQ--------IVHRRIMDGDIVFINRPPTTHK 191
N A G Y G + Y K G+ IV R + DGD V NR P+ HK
Sbjct: 399 NNGPATYPGARYYVKDTGERIDLKYRKSGEPIPLQFGWIVERHLKDGDYVLFNRQPSLHK 458
Query: 192 HSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLL 251
S+ + V + + T ++N + P ADFDGD ++L PQS +AE+ ++ V +Q++
Sbjct: 459 MSMMSHRVKVMNYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQIAWVPRQII 518
Query: 252 SSHSGNLNLQLSTDSLLSL-KMLVKKGFMDRAAANQLAMFL---SLPLPRPALLKAGSGD 307
S + + + D+L + K ++ F D A L ++L +P PA+LK
Sbjct: 519 SPQANKPVMGIVQDTLCGVRKFTLRDNFCDWAFVQNLLLWLPDWDGTIPPPAILKP---R 575
Query: 308 SYWTSIQILQCALPLS-------------FDCTGGRYLIRQSDILEFDLSRDVLPAVINE 354
WT Q++ +P D T L+ +++ +++ + A N
Sbjct: 576 PMWTGKQLVSMCIPKGINIAAHDNERPSPIDVTDQNVLVDNGELVYGTITKSMAGAASNG 635
Query: 355 IAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
+ +F G +A +FF +Q V+ + NGFSVG+ D
Sbjct: 636 LIHVIFRELGHIKARDFFSAMQRVINFWLLHNGFSVGIGD 675
>C4JY44_UNCRE (tr|C4JY44) DNA-directed RNA polymerase OS=Uncinocarpus reesii
(strain UAMH 1704) GN=UREG_07095 PE=3 SV=1
Length = 1747
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 98/345 (28%), Positives = 165/345 (47%), Gaps = 36/345 (10%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDE 140
+++ + K FS+R+VITGD ++EVG+P+ IAQ +T+ E V +N+ L +LVD
Sbjct: 304 RLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPVSIAQTLTYPEVVTPYNINKLGQLVDN 363
Query: 141 NLCL------AYKEGVSTYSLR--EGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKH 192
+ + LR +G G +L+ G V R +MDGD++ NR P+ HK
Sbjct: 364 GPDIHPGARYVIRSSGERIDLRHHKGGGGRNFLQWGWKVERHLMDGDVILFNRQPSLHKE 423
Query: 193 SLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLS 252
S+ A V + T ++N + P ADFDGD ++L PQS A+AE+ +L V ++S
Sbjct: 424 SMMAHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEEARAELSQLCLVPLNIVS 483
Query: 253 SHSGNLNLQLSTDSLLSLKMLVKKG-FMDRAAANQLAMFLSLP-----LPRPALLKAGSG 306
+ + D+L + + ++ F+ + + + L +P LP+PA+LK
Sbjct: 484 PQRNGPLMGIVQDTLCGIYKICRRDVFLTKEQV--MNIMLWVPEWDGVLPQPAILKP--- 538
Query: 307 DSYWTSIQILQCALPLSFD-----------------CTGGRYLIRQSDILEFDLSRDVLP 349
WT QI+ LP + T L+ +++ S+ +
Sbjct: 539 RPRWTGKQIISMVLPSGLNLLRVDRDRVPLSEKFSPLTDSGLLVHGGELMYGMFSKKTVG 598
Query: 350 AVINEIAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
A I +++ GP +NFF+ Q V+ + NGFS+G+ D
Sbjct: 599 ATGGGIVHTIYNEYGPDVCMNFFNGAQTVVNYWLLHNGFSIGIGD 643
>J3PS24_PUCT1 (tr|J3PS24) DNA-directed RNA polymerase OS=Puccinia triticina
(isolate 1-1 / race 1 (BBBD)) GN=PTTG_01940 PE=3 SV=1
Length = 1794
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 94/337 (27%), Positives = 164/337 (48%), Gaps = 27/337 (8%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDE 140
+++ + K FS+R+VITGD ++++VG+P IA+ +T+ ERV +N+ +LQ+LV +
Sbjct: 355 RLRGNLMGKRVDFSARTVITGDPNLQLDQVGVPYSIARNLTYPERVTPYNISYLQELV-Q 413
Query: 141 NLCLAY-------KEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHS 193
N Y ++ LR + T+L+ G IV R + DGD V NR P+ HK S
Sbjct: 414 NGPTEYPGARYVVRDTGDRIDLRYNKRADTFLQYGWIVERHLKDGDYVLFNRQPSLHKMS 473
Query: 194 LQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSS 253
+ + + + T ++N + P ADFDGD ++L PQS +AE+ ++ V + ++S
Sbjct: 474 MMSHRIKLMPYSTFRLNLSVTPPYNADFDGDEMNLHVPQSEETRAELAQIAWVPRNIVSP 533
Query: 254 HSGNLNLQLSTDSLLSL-KMLVKKGFMDRAAANQLAMFL---SLPLPRPALLKAGSGDSY 309
+ + + D+L + K ++ FMDR + +++ +P PA+LK
Sbjct: 534 QANKPVMGIVQDTLCGVRKFTLRDCFMDRDFVQNILLWVPGWDGVVPPPAILKP---KPL 590
Query: 310 WTSIQILQCALP------------LSFDCTGGRYLIRQSDILEFDLSRDVLPAVINEIAA 357
WT QIL +P S I +I+ + + + A +
Sbjct: 591 WTGKQILSMCIPKGINLLRDDENQTSLPIADKGLWIEDGEIIYGVVDKKCVGASQGGLIH 650
Query: 358 SVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
+F KGP+ F +Q V+ + +GFS+G+ D
Sbjct: 651 VIFREKGPEVTRGLFSGIQMVVNYWLLHHGFSIGIGD 687
>G9JY86_9FUNG (tr|G9JY86) DNA-directed RNA polymerase (Fragment) OS=Mortierella
wolfii GN=RPB1 PE=3 SV=1
Length = 464
Score = 137 bits (345), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 101/333 (30%), Positives = 158/333 (47%), Gaps = 39/333 (11%)
Query: 93 FSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDENLCLAYKEGVST 152
FS+R+VITGD I+EVG+P IA+ +T+ E V +N+ LQ+LV + +
Sbjct: 1 FSARTVITGDPNLSIDEVGVPRSIARTLTYPELVTPYNIDKLQELVRNG---PTEHPGAV 57
Query: 153 YSLREG--------SKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALVVYIHDD 204
Y +R+ +K L+ G V R I DGD+V NR P+ HK S+ + +
Sbjct: 58 YVIRDDGQRIDLRWNKREVPLQLGWKVERHINDGDVVIFNRQPSLHKMSMMGHRIRVMPY 117
Query: 205 HTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHSGNLNLQLST 264
T ++N + P ADFDGD ++L PQS+ +AE+ E+ V KQ++S S + +
Sbjct: 118 STFRLNLSVTSPYNADFDGDEMNLHVPQSVETRAELTEICMVPKQIVSPQSNKPVMGIVQ 177
Query: 265 DSLLSLKMLVKKG-FMDRAAANQLAMFLSLP---LPRPALLKAGSGDSYWTSIQILQCAL 320
D+L ++ K+ F+ + L M++ LP PA+LK WT QIL +
Sbjct: 178 DTLCGIRKFTKRDCFLSKDLVMNLVMWVPGWEGFLPTPAILKP---KPLWTGKQILSMVI 234
Query: 321 PLSFDCTGGRYLIRQSDILEFDLSRDVLPAVI--NEIAASVFFGK--------------- 363
P +C Y D + D+S ++ E+ A + K
Sbjct: 235 PKGINCI--TYHSTHPDNEDTDISPGDTKVIVENGELLAGIVCKKTVGTSGGGLIHVIMN 292
Query: 364 --GPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
GP+ A FF+ Q V+ + NGFS+G+ D
Sbjct: 293 QHGPEVAKTFFNGCQTVVNYWLLQNGFSIGIGD 325
>F0UGB6_AJEC8 (tr|F0UGB6) DNA-directed RNA polymerase OS=Ajellomyces capsulata
(strain H88) GN=HCEG_03484 PE=3 SV=1
Length = 1747
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 95/345 (27%), Positives = 166/345 (48%), Gaps = 36/345 (10%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDE 140
+++ + K FS+R+VITGD ++EVG+P+ IAQ +T+ E V N+ L +LVD
Sbjct: 352 RLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPISIAQTLTYPEVVTPFNIAKLGELVDN 411
Query: 141 NLCL------AYKEGVSTYSLR--EGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKH 192
+ + LR +G G +L+ G V R I+DGD++ NR P+ HK
Sbjct: 412 GPDIHPGARYVIRNTGERIDLRHHKGGGGRNFLQYGWRVERHIVDGDVILFNRQPSLHKE 471
Query: 193 SLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLS 252
S+ + + T ++N + P ADFDGD ++L PQS A+AE+ +L V Q++S
Sbjct: 472 SMMGHRIRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEEARAELSQLCMVPLQIVS 531
Query: 253 SHSGNLNLQLSTDSLLSLKMLVKKG-FMDRAAANQLAMFLSLP-----LPRPALLKAGSG 306
+ + D+L + + ++ F+ + + + L +P +P+PA+LK
Sbjct: 532 PQRNGPLMGIVQDTLCGIYKICRRDVFLTKEQV--MNILLWVPDWDGVIPQPAILKP--- 586
Query: 307 DSYWTSIQILQCALPLSFD-----------------CTGGRYLIRQSDILEFDLSRDVLP 349
WT Q++ LP + G L+ +++ S+ +
Sbjct: 587 RPRWTGKQMISMVLPPGLNLLRVDRDKAPLSEKFSPLADGGLLVHSGELMYGMFSKKTVG 646
Query: 350 AVINEIAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
A + ++F GP+ A+NFF+ Q V+ + +GFS+G+ D
Sbjct: 647 ATGGGVIHTIFNEYGPETAMNFFNGAQTVVNYWLLHHGFSIGIGD 691
>Q2PYS5_HYACU (tr|Q2PYS5) DNA-directed RNA polymerase (Fragment)
OS=Hyaloraphidium curvatum GN=RPB1 PE=3 SV=1
Length = 1002
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 101/346 (29%), Positives = 158/346 (45%), Gaps = 39/346 (11%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDE 140
+++ + K FSSR+VITGD I+EVG+P IA+ +TF E V HN+ LQ+LV
Sbjct: 258 RIRGNLMGKRVDFSSRTVITGDPNISIDEVGVPRSIARTLTFPEIVTPHNVARLQELVRN 317
Query: 141 NLCLAYKEGVSTYSLREGS----------KGHTYLKPGQIVHRRIMDGDIVFINRPPTTH 190
A + + Y +R+ G L+ G V R + DGD V NR P+ H
Sbjct: 318 G---ALEHPGANYIVRQSGDRISLKFVPQAGDQPLQIGDTVERHLQDGDYVIFNRQPSLH 374
Query: 191 KHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQL 250
K S+ V I T ++N + P ADFDGD ++L PQS +AE+ E+ V +Q+
Sbjct: 375 KMSMMGHRVKIMPFSTFRLNLSVTTPYNADFDGDEMNLHAPQSYETRAEIKEIMMVPRQI 434
Query: 251 LSSHSGNLNLQLSTDSLLSL-KMLVKKGFMDRAAANQLAMFL----SLPLPRPALLKAGS 305
+S + + + D+ + K ++ M R + M++ P P PA+LK
Sbjct: 435 ISPQANKPVMGIVQDTFCGIRKFTLRDNMMTRDMVMNICMWIPDWDGQPPP-PAILKP-- 491
Query: 306 GDSYWTSIQILQCALPLSFDCTG-----------------GRYLIRQSDILEFDLSRDVL 348
WT Q++ +P + TG + +I +L LS+ +
Sbjct: 492 -QPLWTGKQLMSMVIPSRINVTGKHSTHPDDERDNISPGDTQVVIEDGVVLAGILSKRTV 550
Query: 349 PAVINEIAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
I + GP+ A FF+ Q V+ + NGFS+G+ D
Sbjct: 551 GNSAGGIIHVIMNEYGPEMAKKFFNGTQRVVNYWLLQNGFSIGIGD 596
>Q2PYR4_9FUNG (tr|Q2PYR4) DNA-directed RNA polymerase (Fragment) OS=Rhopalomyces
elegans GN=RPB1 PE=3 SV=1
Length = 792
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 112/410 (27%), Positives = 187/410 (45%), Gaps = 47/410 (11%)
Query: 19 IIRSSRSGEPNFESHEVEANDLQSVVDQYL------QIRGCAKPARDIETHFGVNKELSD 72
+ R R G P+ + E E LQ V Y+ Q + K R +++
Sbjct: 207 VARRERDGAPHHVTEEFETL-LQFHVATYMDNDIAGQPQALQKSGRPLKS--------IR 257
Query: 73 ASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMC 132
A K +++ + K FS+R+VITGD I+EVG+PL IA+ +TF E V +N+
Sbjct: 258 ARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSIDEVGVPLLIAKNLTFPEIVTPYNVG 317
Query: 133 FLQKLVDEN------LCLAYKEGVSTYSLREGSKGHTY-LKPGQIVHRRIMDGDIVFINR 185
LQ+LV Y++ LR +G L+ G V R ++DGD+V NR
Sbjct: 318 KLQELVANGPNAHPGARYVYRDNGERIDLRFNRRGGDIPLQYGWRVERHLVDGDLVIFNR 377
Query: 186 PPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFS 245
P+ HK S+ V + HT ++N + P ADFDGD +++ PQSL +KAE+ E+
Sbjct: 378 QPSLHKMSMMGHRVRVMPHHTFRLNLSVTTPYNADFDGDEMNMHVPQSLESKAEIQEICM 437
Query: 246 VEKQLLSSHSGNLNLQLSTDSLLSLKMLVKKG-FMDRAAANQLAMFL---SLPLPRPALL 301
V +Q++S + + D+L + + ++ F+ R + M++ +P PA+L
Sbjct: 438 VPRQIVSPQKNAPVMGIVQDTLCGVNIFTRRDTFLSRQQTMNILMWVPNWDGRIPAPAIL 497
Query: 302 KAGSGDSYWTSIQILQCALPLSFDCTGG-----------------RYLIRQSDILEFDLS 344
K WT Q+L +P TG + LI ++L +
Sbjct: 498 KP---KPLWTGKQMLTLIIPKGVSYTGAHSGNPDGEHPHLTPNDTKVLIENGELLTGIVC 554
Query: 345 RDVLPAVINEIAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
+ + V + + + GP+ FF+ +Q + + +GFS+G+ D
Sbjct: 555 KKTV-GVGSALIQVIMREHGPEVTKYFFNGIQHITNYWLLQHGFSIGIGD 603
>G9JY87_9FUNG (tr|G9JY87) DNA-directed RNA polymerase (Fragment) OS=Mortierella
wolfii GN=RPB1 PE=3 SV=1
Length = 467
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 101/333 (30%), Positives = 158/333 (47%), Gaps = 39/333 (11%)
Query: 93 FSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDENLCLAYKEGVST 152
FS+R+VITGD I+EVG+P IA+ +T+ E V +N+ LQ+LV + +
Sbjct: 4 FSARTVITGDPNLSIDEVGVPRSIARTLTYPELVTPYNIDKLQELVRNG---PTEHPGAV 60
Query: 153 YSLREG--------SKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALVVYIHDD 204
Y +R+ +K L+ G V R I DGD+V NR P+ HK S+ + +
Sbjct: 61 YVIRDDGQRIDLRWNKREVPLQLGWKVERHINDGDVVIFNRQPSLHKMSMMGHRIRVMPY 120
Query: 205 HTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHSGNLNLQLST 264
T ++N + P ADFDGD ++L PQS+ +AE+ E+ V KQ++S S + +
Sbjct: 121 STFRLNLSVTSPYNADFDGDEMNLHVPQSVETRAELTEICMVPKQIVSPQSNKPVMGIVQ 180
Query: 265 DSLLSLKMLVKKG-FMDRAAANQLAMFLSLP---LPRPALLKAGSGDSYWTSIQILQCAL 320
D+L ++ K+ F+ + L M++ LP PA+LK WT QIL +
Sbjct: 181 DTLCGIRKFTKRDCFLSKDLVMNLVMWVPGWEGFLPTPAILKP---KPLWTGKQILSMVI 237
Query: 321 PLSFDCTGGRYLIRQSDILEFDLSRDVLPAVI--NEIAASVFFGK--------------- 363
P +C Y D + D+S ++ E+ A + K
Sbjct: 238 PKGINCI--TYHSTHPDNEDTDISPGDTKVIVENGELLAGIVCKKTVGTSGGGLIHVIMN 295
Query: 364 --GPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
GP+ A FF+ Q V+ + NGFS+G+ D
Sbjct: 296 QHGPEVAKTFFNGCQTVVNYWLLQNGFSIGIGD 328
>K5W9B5_PHACS (tr|K5W9B5) DNA-directed RNA polymerase OS=Phanerochaete carnosa
(strain HHB-10118-sp) GN=PHACADRAFT_246551 PE=3 SV=1
Length = 1753
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 95/337 (28%), Positives = 160/337 (47%), Gaps = 27/337 (8%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDE 140
+++ + K FS+R+VITGD ++EVG+P IA +TF ERV +N+ +LQ LV
Sbjct: 347 RLRGNLMGKRVDFSARTVITGDPNLELDEVGVPRSIAMNLTFPERVTPYNIHWLQDLV-R 405
Query: 141 NLCLAY-------KEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHS 193
N Y K+ LR + +L+ G IV R + DGD V NR P+ HK S
Sbjct: 406 NGPTTYPGARYVVKDTGERIDLRYNKRADAFLQFGWIVERHLKDGDFVLFNRQPSLHKMS 465
Query: 194 LQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSS 253
+ + V + T ++N + P ADFDGD +++ PQS +AE+ ++ V +Q++S
Sbjct: 466 MMSHRVRLMPYSTFRLNLSVTPPYNADFDGDEMNMHVPQSEETRAELSQIAWVPRQIISP 525
Query: 254 HSGNLNLQLSTDSLLSL-KMLVKKGFMDRAAANQLAMFL---SLPLPRPALLKAGSGDSY 309
+ + + D+L + K ++ F+D + +++ +P P ++K
Sbjct: 526 QANKPVMGIVQDTLCGIRKFTLRDTFLDWTQVQNILLWVPDWDGTVPTPVVIKP---KPL 582
Query: 310 WTSIQILQCALPLSFDCTGGR------------YLIRQSDILEFDLSRDVLPAVINEIAA 357
WT Q+L +P + LI +++ + + + A +
Sbjct: 583 WTGKQLLSMCIPRGINIHRNPDPKSSNPVFDDGVLIENGELIFGIVDKKTVGASQGGLVH 642
Query: 358 SVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
VF KGP+ F LQ V+ +F NGFS+G+ D
Sbjct: 643 VVFREKGPEMTRQLFTGLQQVVNYWLFHNGFSIGIGD 679
>Q5QHU1_AMAPH (tr|Q5QHU1) DNA-directed RNA polymerase (Fragment) OS=Amanita
phalloides PE=3 SV=1
Length = 1007
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 94/337 (27%), Positives = 163/337 (48%), Gaps = 27/337 (8%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDE 140
+++ + K FS+R+VITGD ++EVG+P IA +T+ ERV +N+ +LQ+LV
Sbjct: 264 RLRGNLMGKRVDFSARTVITGDPNLELDEVGVPRSIAMNLTYPERVTPYNIGYLQELV-R 322
Query: 141 NLCLAY-------KEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHS 193
N AY ++ LR + +L+ G IV R + DGD V NR P+ HK S
Sbjct: 323 NGPTAYPGARYVVRDTGERIDLRYNKRADAHLQYGWIVERHLKDGDFVLFNRQPSLHKMS 382
Query: 194 LQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSS 253
+ + V + T ++N + P ADFDGD +++ PQS +AE+ ++ V +Q++S
Sbjct: 383 MMSHRVKLMPYSTFRLNLSVTPPYNADFDGDEMNMHIPQSEETRAELSQIAWVPRQIISP 442
Query: 254 HSGNLNLQLSTDSLLSL-KMLVKKGFMDRAAANQLAMFL---SLPLPRPALLKAGSGDSY 309
+ + + D+L + K+ ++ F+D + +++ +P PA+LK
Sbjct: 443 QANKPVMGIVQDTLCGIRKLTLRDTFLDWNQVQNILLWVPDWDGSVPIPAILKP---KPL 499
Query: 310 WTSIQILQCALPLSFDCT------------GGRYLIRQSDILEFDLSRDVLPAVINEIAA 357
W+ QIL +P + +I +I+ + + + A +
Sbjct: 500 WSGKQILSMTIPRGINIHRSPDPKSSNPVFDDGMMIENGEIIFGIVEKKTVGASQGGLVH 559
Query: 358 SVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
VF KGP+ +Q V+ +F NGFS+G+ D
Sbjct: 560 VVFREKGPEATRMLLTGIQMVVNYWLFHNGFSIGIGD 596
>Q304Q7_9HOMO (tr|Q304Q7) DNA-directed RNA polymerase (Fragment) OS=Bondarzewia
montana GN=rpb1 PE=3 SV=1
Length = 732
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 97/345 (28%), Positives = 161/345 (46%), Gaps = 42/345 (12%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDE 140
+++ + K FS+R+VITGD ++EVG+P IA +T+ ERV +N+ +LQ+LV
Sbjct: 263 RLRGNLMGKRVDFSARTVITGDPNLELDEVGVPKSIAMTLTYPERVTPYNIEYLQELV-- 320
Query: 141 NLCLAYKEGVSTY--------------SLREGSKGHTYLKPGQIVHRRIMDGDIVFINRP 186
+ G +TY LR + T+L+ G IV R + DGD V NR
Sbjct: 321 ------RNGPTTYPGARYVVRDTNERIDLRYNKRADTFLQFGWIVERHLKDGDFVLFNRQ 374
Query: 187 PTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGD-CVHLFYPQSLAAKAEVVELFS 245
P+ HK S+ + V + T ++N + P ADFDGD PQS +AE+ ++
Sbjct: 375 PSLHKMSMMSHRVRLMPYSTFRLNLSVTPPYNADFDGDEMXXXXVPQSEETRAELSQIAW 434
Query: 246 VEKQLLSSHSGNLNLQLSTDSLLSL-KMLVKKGFMDRAAANQLAMFL---SLPLPRPALL 301
V +Q++S + + + D+L + K ++ F+D + +++ +P PA++
Sbjct: 435 VPRQIISPQANKPVMGIVQDTLCGIRKFTLRDTFLDWNQVQNILLWVPDWDGSVPIPAVI 494
Query: 302 KAGSGDSYWTSIQILQCALPLSFDCTGGR------------YLIRQSDILEFDLSRDVLP 349
K WT QIL +P + +I +I+ + + +
Sbjct: 495 KP---KPLWTGKQILSMTIPRGINIQRSSDSKTPNPVFDDGMMIENGEIIYGTVEKKTVG 551
Query: 350 AVINEIAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
A + VF KGP+ F LQ V+ +F NGFS+G+ D
Sbjct: 552 ASQGGLVHVVFREKGPEATRTLFTGLQTVVNFWLFHNGFSIGIGD 596
>I2FUN2_USTH4 (tr|I2FUN2) DNA-directed RNA polymerase OS=Ustilago hordei (strain
Uh4875-4) GN=UHOR_05868 PE=3 SV=1
Length = 1784
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 93/338 (27%), Positives = 163/338 (48%), Gaps = 28/338 (8%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDE 140
+++ + K FS+R+VITGD ++EVG+P IA+ +T+ ERV +N +L +LV
Sbjct: 350 RLRGNLMGKRVNFSARTVITGDPLLELDEVGVPKSIARNLTYPERVTPYNRAWLSELVRN 409
Query: 141 N------LCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSL 194
++ L+ + L+PG IV R + DGD + NR P+ HK S+
Sbjct: 410 GPNDYPGAKYVIRDTGERIDLKYNRRSDMALQPGWIVERHLKDGDYILFNRQPSLHKMSM 469
Query: 195 QALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSH 254
+ + + D T ++N + P ADFDGD ++L PQS +AE+ ++ V +Q++S
Sbjct: 470 MSHRIKLMDYSTFRLNLSVTPPYNADFDGDEMNLHVPQSEETRAELSQIAWVPRQIVSPQ 529
Query: 255 SGNLNLQLSTDSLLSL-KMLVKKGFMDRAAANQLAMFLS---LPLPRPALLKAGSGDSYW 310
+ + + D+L + K ++ +D Q+ ++++ +P P +LK YW
Sbjct: 530 ANKPVMGIVQDTLCGIRKFSLRDCLLDYQQVQQVLLWVADWDGVVPMPCILKP---KPYW 586
Query: 311 TSIQILQCALPLSFDC--------------TGGRYLIRQSDILEFDLSRDVLPAVINEIA 356
+ QIL +P + G Y I +I+ +++ V+ A +
Sbjct: 587 SGKQILSMCIPKGINVFLDKDKGLKNNFLKDDGVY-IENGEIMYGVINKKVVGASAGGLI 645
Query: 357 ASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
+F KGP FF +Q V+ + NGFS+G+ D
Sbjct: 646 HIIFREKGPVVCKRFFSGVQRVVNFWLLHNGFSIGIGD 683
>A6QYA7_AJECN (tr|A6QYA7) DNA-directed RNA polymerase OS=Ajellomyces capsulata
(strain NAm1 / WU24) GN=HCAG_02364 PE=3 SV=1
Length = 1747
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 95/345 (27%), Positives = 166/345 (48%), Gaps = 36/345 (10%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDE 140
+++ + K FS+R+VITGD ++EVG+P+ IAQ +T+ E V N+ L +LVD
Sbjct: 352 RLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPISIAQTLTYPEVVTPFNIAKLGELVDN 411
Query: 141 NLCL------AYKEGVSTYSLR--EGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKH 192
+ + LR +G G +L+ G V R I+DGD++ NR P+ HK
Sbjct: 412 GPDIHPGARYVIRSTGERIDLRHHKGGGGRNFLQYGWRVERHIVDGDVILFNRQPSLHKE 471
Query: 193 SLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLS 252
S+ + + T ++N + P ADFDGD ++L PQS A+AE+ +L V Q++S
Sbjct: 472 SMMGHRIRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEEARAELSQLCMVPLQIVS 531
Query: 253 SHSGNLNLQLSTDSLLSLKMLVKKG-FMDRAAANQLAMFLSLP-----LPRPALLKAGSG 306
+ + D+L + + ++ F+ + + + L +P +P+PA+LK
Sbjct: 532 PQRNGPLMGIVQDTLCGIYKICRRDVFLTKEQV--MNILLWVPDWDGVIPQPAILKP--- 586
Query: 307 DSYWTSIQILQCALPLSFD-----------------CTGGRYLIRQSDILEFDLSRDVLP 349
WT Q++ LP + G L+ +++ S+ +
Sbjct: 587 RPRWTGKQMISMVLPPGLNLLRVDRDKAPLSEKFSPLADGGLLVHGGELMYGMFSKKTVG 646
Query: 350 AVINEIAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
A + ++F GP+ A+NFF+ Q V+ + +GFS+G+ D
Sbjct: 647 ATGGGVIHTIFNEYGPETAMNFFNGAQTVVNYWLLHHGFSIGIGD 691
>H2EQP0_UMBRA (tr|H2EQP0) DNA-directed RNA polymerase (Fragment) OS=Umbelopsis
ramanniana GN=RPB1 PE=3 SV=1
Length = 463
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 94/333 (28%), Positives = 156/333 (46%), Gaps = 37/333 (11%)
Query: 93 FSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDENLCLAYKEGVST 152
FS+R+VITGD ++EVG+P IA+ +T+ E V +N+ LQ LV + +
Sbjct: 1 FSARTVITGDPNLSVDEVGVPRSIARTLTYPEIVTPYNIDKLQTLVRNG---PTEHPGAK 57
Query: 153 YSLREGSK----------GHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALVVYIH 202
Y +R+ + G L+ G V R I DGD+V NR P+ HK S+ + +
Sbjct: 58 YIIRDTGERIDLRYHKRAGEIPLQYGYKVERHINDGDVVIFNRQPSLHKMSMMGHKIRVM 117
Query: 203 DDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHSGNLNLQL 262
T ++N + P ADFDGD ++L PQSL +AE+ E+ V KQ++S S + +
Sbjct: 118 PYSTFRLNLSVTSPYNADFDGDEMNLHVPQSLETRAEITEICMVPKQIVSPQSNKPVMGI 177
Query: 263 STDSLLSLKMLVKKG-FMDRAAANQLAMFL---SLPLPRPALLKAGSGDSYWTSIQILQC 318
D+L ++ K+ F+ + + M++ LP PA+LK WT QI+
Sbjct: 178 VQDTLCGIRKFTKRDCFLSKDLVMNIVMWVPDWDGYLPTPAILKP---KPMWTGKQIISM 234
Query: 319 ALPLSFDCT-----------------GGRYLIRQSDILEFDLSRDVLPAVINEIAASVFF 361
+P +C R +I D++ + + + + ++
Sbjct: 235 IIPKGINCQTVHSTHPDGETTWISPGDTRVVIENGDLISGIVCKKTVGTAGGGLIHTILN 294
Query: 362 GKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
+G + A NF + Q V+ + NGFS+G+ D
Sbjct: 295 EQGSEAAKNFLNGAQTVVNYWLLQNGFSIGIGD 327
>Q4P7Q0_USTMA (tr|Q4P7Q0) DNA-directed RNA polymerase OS=Ustilago maydis (strain
521 / FGSC 9021) GN=UM03863.1 PE=3 SV=1
Length = 1774
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 93/338 (27%), Positives = 163/338 (48%), Gaps = 28/338 (8%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDE 140
+++ + K FS+R+VITGD ++EVG+P IA+ +T+ ERV +N +L +LV
Sbjct: 349 RLRGNLMGKRVNFSARTVITGDPLLELDEVGVPKSIARNLTYPERVTPYNRAWLSELVRN 408
Query: 141 N------LCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSL 194
++ L+ + L+PG IV R + DGD + NR P+ HK S+
Sbjct: 409 GPNDYPGAKYVIRDTGERIDLKYNRRSDMALQPGWIVERHLKDGDYILFNRQPSLHKMSM 468
Query: 195 QALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSH 254
+ + + D T ++N + P ADFDGD ++L PQS +AE+ ++ V +Q++S
Sbjct: 469 MSHRIKLMDYSTFRLNLSVTPPYNADFDGDEMNLHVPQSEETRAELSQIAWVPRQIVSPQ 528
Query: 255 SGNLNLQLSTDSLLSL-KMLVKKGFMDRAAANQLAMFLS---LPLPRPALLKAGSGDSYW 310
+ + + D+L + K ++ +D Q+ ++++ +P P +LK YW
Sbjct: 529 ANKPVMGIVQDTLCGIRKFSLRDCLLDYQQVQQVLLWVADWDGVVPMPCILKP---KPYW 585
Query: 311 TSIQILQCALPLSFDC--------------TGGRYLIRQSDILEFDLSRDVLPAVINEIA 356
+ QIL +P + G Y I +I+ +++ V+ A +
Sbjct: 586 SGKQILSMCIPKGINVFLDKDKGLKNNFLKDDGVY-IENGEIMYGVINKKVVGASAGGLI 644
Query: 357 ASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
+F KGP FF +Q V+ + NGFS+G+ D
Sbjct: 645 HIIFREKGPVVCKRFFSGVQRVVNFWLLHNGFSIGIGD 682
>E6ZML9_SPORE (tr|E6ZML9) DNA-directed RNA polymerase OS=Sporisorium reilianum
(strain SRZ2) GN=sr14765 PE=3 SV=1
Length = 1785
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 94/338 (27%), Positives = 163/338 (48%), Gaps = 28/338 (8%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDE 140
+++ + K FS+R+VITGD ++EVG+P IA+ +T+ ERV +N +L +LV
Sbjct: 349 RLRGNLMGKRVNFSARTVITGDPLLELDEVGVPKSIARNLTYPERVTPYNRAWLSELVRN 408
Query: 141 N------LCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSL 194
++ L+ + L+PG IV R + DGD V NR P+ HK S+
Sbjct: 409 GPNDYPGAKYVIRDTGERIDLKYNRRSDMALQPGWIVERHLKDGDYVLFNRQPSLHKMSM 468
Query: 195 QALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSH 254
+ + + D T ++N + P ADFDGD ++L PQS +AE+ ++ V +Q++S
Sbjct: 469 MSHRIKLMDYSTFRLNLSVTPPYNADFDGDEMNLHVPQSEETRAELSQIAWVPRQIVSPQ 528
Query: 255 SGNLNLQLSTDSLLSL-KMLVKKGFMDRAAANQLAMFLS---LPLPRPALLKAGSGDSYW 310
+ + + D+L + K ++ +D Q+ ++++ +P P +LK YW
Sbjct: 529 ANKPVMGIVQDTLCGIRKFSLRDCLLDYHQVQQVLLWVADWDGVVPMPCILKP---KPYW 585
Query: 311 TSIQILQCALPLSFDC--------------TGGRYLIRQSDILEFDLSRDVLPAVINEIA 356
+ QIL +P + G Y I +I+ +++ V+ A +
Sbjct: 586 SGKQILSMCIPKGINVFLDKDKGLKNNFLKDDGVY-IENGEIMYGVINKKVVGASAGGLI 644
Query: 357 ASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
+F KGP FF +Q V+ + NGFS+G+ D
Sbjct: 645 HIIFREKGPVICKRFFSGVQRVVNFWLLHNGFSIGIGD 682
>R9NXG0_9BASI (tr|R9NXG0) Uncharacterized protein OS=Pseudozyma hubeiensis SY62
GN=PHSY_000806 PE=4 SV=1
Length = 1783
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 93/338 (27%), Positives = 163/338 (48%), Gaps = 28/338 (8%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDE 140
+++ + K FS+R+VITGD ++EVG+P IA+ +T+ ERV +N +L +LV
Sbjct: 349 RLRGNLMGKRVNFSARTVITGDPLLELDEVGVPKSIARNLTYPERVTPYNRAWLSELVRN 408
Query: 141 N------LCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSL 194
++ L+ + L+PG IV R + DGD + NR P+ HK S+
Sbjct: 409 GPNDYPGAKYVIRDTGERIDLKYNRRSDMALQPGWIVERHLKDGDYILFNRQPSLHKMSM 468
Query: 195 QALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSH 254
+ + + D T ++N + P ADFDGD ++L PQS +AE+ ++ V +Q++S
Sbjct: 469 MSHRIKLMDYSTFRLNLSVTPPYNADFDGDEMNLHVPQSEETRAELSQIAWVPRQIVSPQ 528
Query: 255 SGNLNLQLSTDSLLSL-KMLVKKGFMDRAAANQLAMFLS---LPLPRPALLKAGSGDSYW 310
+ + + D+L + K ++ +D Q+ ++++ +P P +LK YW
Sbjct: 529 ANKPVMGIVQDTLCGIRKFSLRDCLLDYHQVQQVLLWVADWDGVVPMPCILKP---KPYW 585
Query: 311 TSIQILQCALPLSFDC--------------TGGRYLIRQSDILEFDLSRDVLPAVINEIA 356
+ QIL +P + G Y I +I+ +++ V+ A +
Sbjct: 586 SGKQILSMCIPKGINVFLDKDKGLKNNFLKDDGVY-IENGEIMYGVINKKVVGASAGGLI 644
Query: 357 ASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
+F KGP FF +Q V+ + NGFS+G+ D
Sbjct: 645 HIIFREKGPVVCKRFFSGVQRVVNFWLLHNGFSIGIGD 682
>L0PB90_PNEJ8 (tr|L0PB90) DNA-directed RNA polymerase OS=Pneumocystis jiroveci
(strain SE8) GN=PNEJI1_003014 PE=3 SV=1
Length = 1762
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 100/341 (29%), Positives = 171/341 (50%), Gaps = 34/341 (9%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLV-- 138
+++ + K FS+R+VITGD ++E+G+P IA+ +T+ E V +N+ LQ+LV
Sbjct: 339 RLRGNLMGKRVDFSARTVITGDPNLSLDELGVPRSIARILTYPETVTPYNIHKLQELVRN 398
Query: 139 --DENLCLAY--KEGVSTYSLREGSK-GHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHS 193
+E+ Y ++ LR + G L+ G V R I DGD+V NR P+ HK S
Sbjct: 399 GPNEHPGAKYIIRDTGERIDLRYHKRAGDIPLQYGWRVERHITDGDVVIFNRQPSLHKMS 458
Query: 194 LQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSS 253
+ V + T +IN + P ADFDGD ++L PQS +AE++E+ V KQ++S
Sbjct: 459 MMGHRVKVMPYSTFRINLSVTPPYNADFDGDEMNLHVPQSEETRAEIIEICMVPKQIVSP 518
Query: 254 HSGNLNLQLSTDSLLSLKMLVKK-GFMDRAAANQLAMFLSLP-----LPRPALLKAGSGD 307
S + + D+L +K L ++ F+ + + + L +P +P PA++K
Sbjct: 519 QSNKPVMGIVQDTLAGVKKLTRRDNFLSKDQV--MNILLWVPEWDGNMPPPAIIKP---K 573
Query: 308 SYWTSIQILQCAL--------------PLSFDCTGGRYLIRQSDILEFDLSRDVLPAVIN 353
+ WT QIL + P++ D TG ++ +I+ + + + A
Sbjct: 574 AMWTGKQILSMVIPKGINFIRDDEKQTPMTPDDTG--MMLENGEIIYGIVDKKTVGASQG 631
Query: 354 EIAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
+ ++ KGP+ FF+ +Q V+ + NGFS+G+ D
Sbjct: 632 GLVHTIMREKGPEVCRVFFNGIQMVVNYWLLHNGFSIGIGD 672
>E6R7B9_CRYGW (tr|E6R7B9) DNA-directed RNA polymerase OS=Cryptococcus gattii
serotype B (strain WM276 / ATCC MYA-4071) GN=CGB_E5020W
PE=3 SV=1
Length = 1786
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 100/356 (28%), Positives = 170/356 (47%), Gaps = 32/356 (8%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDE 140
+M+ + K FS+R+VITGD ++++VG+P IA +T+ ERV +N+ +LQ LV
Sbjct: 351 RMRGNLMGKRVDFSARTVITGDPNLQLDQVGVPKSIAMTLTYPERVTPYNIVYLQTLV-- 408
Query: 141 NLCLAYKEGVSTYSLREGSKGH-TYLKPGQ--------IVHRRIMDGDIVFINRPPTTHK 191
N A G Y G + Y K G+ IV R + DGD V NR P+ HK
Sbjct: 409 NNGPATYPGARYYVKDTGERVDLKYRKSGEPISLQFGWIVERHLKDGDYVLFNRQPSLHK 468
Query: 192 HSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLL 251
S+ + V + + T ++N + P ADFDGD ++L PQS +AE+ ++ V +Q++
Sbjct: 469 MSMMSHRVKLMNYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQIAWVPRQIV 528
Query: 252 SSHSGNLNLQLSTDSLLSL-KMLVKKGFMDRAAANQLAMFLSL---PLPRPALLKAGSGD 307
S + + + D+L + K ++ F+D + ++L +P PA+ K
Sbjct: 529 SPQANKPVMGIVQDTLCGIRKFTLRDNFLDWLQVQHILLWLPEWDGSIPPPAIFKP---K 585
Query: 308 SYWTSIQILQCALPLS-------------FDCTGGRYLIRQSDILEFDLSRDVLPAVINE 354
WT Q+L +P D T LI +++ + +++ + N
Sbjct: 586 PMWTGKQLLSMTIPKGINITYKNNEKPSPIDVTDENVLIENGELVHGTIVKNMAGSANNG 645
Query: 355 IAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDFSISGA-VKRVTDRNI 409
+ +F G A +FF +Q V+ + GFSVG+ D + A + +T+R +
Sbjct: 646 LVHVIFRELGHVAARDFFSAVQRVVNYWLLHYGFSVGIGDTIVDKATMAGITNRMV 701
>Q0PQ02_9LECA (tr|Q0PQ02) DNA-directed RNA polymerase (Fragment) OS=Lecanora
hybocarpa GN=RPB1 PE=3 SV=1
Length = 1016
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 99/338 (29%), Positives = 165/338 (48%), Gaps = 29/338 (8%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLV-- 138
+++ + K FS+R+VITGD ++EVG+P IA+ +T+ E V +N+ L +LV
Sbjct: 270 RLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKN 329
Query: 139 --DENLCLAY--KEGVSTYSLREGSK-GHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHS 193
+E+ Y ++ LR + G L+ G V R I+DGD + NR P+ HK S
Sbjct: 330 GPNEHPGAKYVIRDSGERIDLRHHKRAGEISLQYGWKVERHIVDGDYIIFNRQPSLHKES 389
Query: 194 LQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSS 253
+ V + T ++N + P ADFDGD ++L PQS +AEV +L V ++S
Sbjct: 390 MMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVNQLCMVPLNIVSP 449
Query: 254 HSGNLNLQLSTDSLLSL-KMLVKKGFMDRAAANQLAMFLSLP-----LPRPALLKAGSGD 307
+ + D+L + KM + F+ + + + L +P +P+PA+LK
Sbjct: 450 QRNGPLMGIVQDTLCGIYKMCRRDVFLTKEQV--MNILLWVPDWDGVIPQPAILKP---R 504
Query: 308 SYWTSIQILQCALPLSFDCTGGR-----------YLIRQSDILEFDLSRDVLPAVINEIA 356
WT QIL +P + G L+ +++ L++ + A +
Sbjct: 505 PMWTGKQILSLVIPAGLNLLRGSDEGFSPLNDDGLLVSGGELMYGLLNKKSVGATGGGVI 564
Query: 357 ASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
+F KGP+ A+NFF+ Q V+ + NGFS+G+ D
Sbjct: 565 HIIFNEKGPEAAMNFFNGAQTVVNYWLLHNGFSIGIGD 602
>J9VSQ4_CRYNH (tr|J9VSQ4) DNA-directed RNA polymerase OS=Cryptococcus neoformans
var. grubii serotype A (strain H99 / ATCC 208821 / CBS
10515 / FGSC 9487) GN=CNAG_02166 PE=3 SV=1
Length = 1786
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 100/356 (28%), Positives = 171/356 (48%), Gaps = 32/356 (8%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDE 140
+M+ + K FS+R+VITGD ++++VG+P IA +T+ ERV +N+ +LQ LV
Sbjct: 351 RMRGNLMGKRVDFSARTVITGDPNLQLDQVGVPKSIAMTLTYPERVTPYNIVYLQTLV-- 408
Query: 141 NLCLAYKEGVSTYSLREGSKGH-TYLKPGQ--------IVHRRIMDGDIVFINRPPTTHK 191
N A G Y G + Y K G+ IV R + DGD V NR P+ HK
Sbjct: 409 NNGPATYPGARYYVKDTGERVDLKYRKSGEPISLQFGWIVERHLKDGDYVLFNRQPSLHK 468
Query: 192 HSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLL 251
S+ + V + + T ++N + P ADFDGD ++L PQS +AE+ ++ V +Q++
Sbjct: 469 MSMMSHRVKLMNYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQIAWVPRQIV 528
Query: 252 SSHSGNLNLQLSTDSLLSL-KMLVKKGFMDRAAANQLAMFL---SLPLPRPALLKAGSGD 307
S + + + D+L + K ++ F+D + ++L + +P PA+ K
Sbjct: 529 SPQANKPVMGIVQDTLCGIRKFTLRDNFLDWLQVQHILLWLPEWNGTIPPPAIFKP---K 585
Query: 308 SYWTSIQILQCALPLS-------------FDCTGGRYLIRQSDILEFDLSRDVLPAVINE 354
WT Q+L +P D T LI +++ + +++ + N
Sbjct: 586 PMWTGKQLLSMTIPKGINITYKNNEKPSPIDVTDENVLIENGELVHGTIVKNMAGSANNG 645
Query: 355 IAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDFSISGA-VKRVTDRNI 409
+ +F G A +FF +Q V+ + GFSVG+ D + A + +T+R +
Sbjct: 646 LVHVIFRELGHIAARDFFSAVQRVVNYWLLHYGFSVGIGDTIVDKATMAGITNRMV 701
>M9MD47_9BASI (tr|M9MD47) Ngg1-interacting factor 3 protein NIF3L1 OS=Pseudozyma
antarctica T-34 GN=PANT_10d00001 PE=4 SV=1
Length = 1947
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 91/337 (27%), Positives = 161/337 (47%), Gaps = 26/337 (7%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDE 140
+++ + K FS+R+VITGD ++EVG+P IA+ +T+ ERV +N +L +LV
Sbjct: 512 RLRGNLMGKRVNFSARTVITGDPLLELDEVGVPKSIARNLTYPERVTAYNRAWLSELVRN 571
Query: 141 N------LCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSL 194
++ L+ + L+PG IV R + DGD + NR P+ HK S+
Sbjct: 572 GPNDYPGAKYVIRDTGERIDLKYNRRSDMALQPGWIVERHLKDGDYILFNRQPSLHKMSM 631
Query: 195 QALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSH 254
+ + + D T ++N + P ADFDGD ++L PQS +AE+ ++ V +Q++S
Sbjct: 632 MSHRIKLMDYSTFRLNLSVTPPYNADFDGDEMNLHVPQSEETRAELSQIAWVPRQIVSPQ 691
Query: 255 SGNLNLQLSTDSLLSL-KMLVKKGFMDRAAANQLAMFLS---LPLPRPALLKAGSGDSYW 310
+ + + D+L + K ++ +D Q+ ++++ +P P +LK YW
Sbjct: 692 ANKPVMGIVQDTLCGIRKFSLRDCLLDYQQVQQVLLWVADWDGVVPMPCILKP---KPYW 748
Query: 311 TSIQILQCALPLSFDC-------------TGGRYLIRQSDILEFDLSRDVLPAVINEIAA 357
+ QIL +P + I +I+ +++ V+ A +
Sbjct: 749 SGKQILSMCIPKGINVFLDKDKGLKNNFLKDDGVCIENGEIMYGVINKKVVGASAGGLIH 808
Query: 358 SVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
+F KGP FF +Q V+ + NGFS+G+ D
Sbjct: 809 IIFREKGPVVCKRFFSGVQRVVNFWLLHNGFSIGIGD 845
>B6JYP8_SCHJY (tr|B6JYP8) DNA-directed RNA polymerase OS=Schizosaccharomyces
japonicus (strain yFS275 / FY16936) GN=SJAG_01713 PE=3
SV=1
Length = 1748
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 100/339 (29%), Positives = 168/339 (49%), Gaps = 30/339 (8%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLV-- 138
+++ + K FS+R+VITGD ++E+G+P IA+ +T+ E V +N+ LQ+LV
Sbjct: 341 RLRGNLMGKRVDFSARTVITGDPNLSLDELGVPRTIAKTLTYPETVTPYNIYQLQELVRN 400
Query: 139 --DENLCLAY--KEGVSTYSLREGSK-GHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHS 193
DE+ Y ++ LR + G L+ G V R I DGD+V NR P+ HK S
Sbjct: 401 GPDEHPGAKYIIRDTGERIDLRYHKRAGDIPLRYGWRVERHIRDGDVVIFNRQPSLHKMS 460
Query: 194 LQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSS 253
+ + + T ++N + P ADFDGD +++ PQS +AE+ E+ V +Q++S
Sbjct: 461 MMGHRIRVMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSEETRAEIQEIAMVPRQIVSP 520
Query: 254 HSGNLNLQLSTDSLLSL-KMLVKKGFMDRAAANQLAMFLSLP-----LPRPALLKAGSGD 307
S + + D+L + K ++ F+ R + + L +P +P P +LK
Sbjct: 521 QSNKPVMGIVQDTLAGVRKFSLRDNFLSRDVV--MNIMLWVPNWDGVVPPPVILKP---K 575
Query: 308 SYWTSIQILQCALP----LSFDCTGGRY--------LIRQSDILEFDLSRDVLPAVINEI 355
WT QIL +P L+ D Y LI DI+ + + + A +
Sbjct: 576 PLWTGKQILSLVIPKGINLTRDDDKQTYINPNDKGMLIENGDIVYGVVDKKTVGASQGGL 635
Query: 356 AASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
+++ KGP+ +FF+ +Q V+ + NGFS+G+ D
Sbjct: 636 VHTIWKEKGPEVCKSFFNGIQRVVNFWLLHNGFSIGIGD 674
>E6N7C0_9ARCH (tr|E6N7C0) DNA-directed RNA polymerase OS=Candidatus Caldiarchaeum
subterraneum GN=CSUB_C1097 PE=3 SV=1
Length = 1254
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 88/250 (35%), Positives = 129/250 (51%), Gaps = 25/250 (10%)
Query: 93 FSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDENLCLAYKEGVST 152
FS+R+VI+ D RINEVG+PLEIA ++T ERV N+ ++ LV + K +
Sbjct: 320 FSARTVISPDPNIRINEVGVPLEIAMQLTVAERVTPWNLEKMRTLVRNG---SDKYPGAR 376
Query: 153 YSLREGSKG------------HTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALVVY 200
Y +R K T L+PG +V R + DGDIV NR P+ H+ S+ A V
Sbjct: 377 YIIRPDGKRVRLKFVANLEELATALEPGYVVERHLQDGDIVLFNRQPSLHRMSIMAHYVR 436
Query: 201 IHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHSGNLNL 260
+ T+++NP +C P ADFDGD ++L PQS A+ E EL VE ++S G +
Sbjct: 437 VLPYKTLRLNPAVCTPYNADFDGDEMNLHVPQSEEAQTEARELLVVENNIISPRYGAPII 496
Query: 261 QLSTDSLLSLKMLVKKGFMDRAAANQLAMFLSL-----PLPRPALLKAGSGDSYWTSIQI 315
+ D L SL +L + + ++LAM L+ P+P PA+ + WT Q+
Sbjct: 497 GVIRDFLTSLYLLTRD--ETKLTKSELAMLLAAIKYRGPIPPPAV---KDPEPMWTGKQV 551
Query: 316 LQCALPLSFD 325
LP F+
Sbjct: 552 FSLLLPKDFN 561
>Q2PYQ3_PHYBL (tr|Q2PYQ3) DNA-directed RNA polymerase (Fragment) OS=Phycomyces
blakesleeanus GN=RPB1 PE=3 SV=1
Length = 564
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 100/347 (28%), Positives = 163/347 (46%), Gaps = 41/347 (11%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDE 140
+++ + K FS+R+VITGD ++EVG+P IA+ +T+ E V +N+ LQ LV
Sbjct: 100 RLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARNLTYPEIVTPYNIDKLQVLV-R 158
Query: 141 NLCLAYKEGVSTYSLREGSK----------GHTYLKPGQIVHRRIMDGDIVFINRPPTTH 190
N L + + Y +R+ + G L+ G V R I DGD+V NR P+ H
Sbjct: 159 NGPLEHPG--AKYVIRDNGERIDLRYRKRAGEIPLQYGYRVERHINDGDVVIFNRQPSLH 216
Query: 191 KHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQL 250
K S+ V + T ++N + P ADFDGD ++L PQSL +AEV E+ V KQ+
Sbjct: 217 KMSMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSLETRAEVTEICMVPKQI 276
Query: 251 LSSHSGNLNLQLSTDSLLSL-KMLVKKGFMDRAAANQLAMFLSLP-----LPRPALLKAG 304
+S S + + D+L + K ++ F+ + + M+ +P +P PA+LK
Sbjct: 277 VSPQSNKPVMGIVQDTLCGIRKFTLRDCFITKDVVMNIVMW--VPDWDGYIPPPAILKP- 333
Query: 305 SGDSYWTSIQILQCALPLSFDCT-----------------GGRYLIRQSDILEFDLSRDV 347
WT QI+ +P +C R +I ++L + +
Sbjct: 334 --KPMWTGKQIVSMVIPRGINCQTFHSTHPDKENTYISPGDTRVVIENGELLCGIVCKKT 391
Query: 348 LPAVINEIAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
+ + ++ GP+ A NF Q V+ + NGFS+G+ D
Sbjct: 392 VGTTSGGLIHTIVNELGPEAAKNFLTGTQQVVNYWLLQNGFSIGIGD 438
>G9JY81_9FUNG (tr|G9JY81) DNA-directed RNA polymerase (Fragment) OS=Mortierella
longicollis GN=RPB1 PE=3 SV=1
Length = 464
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 94/331 (28%), Positives = 154/331 (46%), Gaps = 37/331 (11%)
Query: 95 SRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDENLCLAYKEGVSTYS 154
+R+VITGD ++EVG+P IA+ +T+ E V +N+ LQ LV + + Y
Sbjct: 1 ARTVITGDPNLSVDEVGVPRSIARTLTYPEIVTPYNIDKLQTLVRNG---PTEHPGAKYV 57
Query: 155 LREGSK----------GHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALVVYIHDD 204
+R+ + G L G V R I DGD+V NR P+ HK S+ + +
Sbjct: 58 IRDTGERIDLRYHKRAGEIPLHYGYKVERHINDGDVVIFNRQPSLHKMSMMGHKIRVMPY 117
Query: 205 HTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHSGNLNLQLST 264
T ++N + P ADFDGD ++L PQSL +AE+ E+ V KQ++S S + +
Sbjct: 118 STFRLNLSVTSPYNADFDGDEMNLHVPQSLETRAEITEICMVPKQIVSPQSNKPVMGIVQ 177
Query: 265 DSLLSLKMLVKKG-FMDRAAANQLAMFL---SLPLPRPALLKAGSGDSYWTSIQILQCAL 320
D+L ++ K+ F+ + + M++ LP PA+LK WT Q+L +
Sbjct: 178 DTLCGIRKFTKRDCFLSKDLVMNIVMWVPDWDGYLPTPAILKP---KPMWTGKQVLSLII 234
Query: 321 PLSFDC-----------------TGGRYLIRQSDILEFDLSRDVLPAVINEIAASVFFGK 363
P +C R LI D++ + + + + ++ +
Sbjct: 235 PKGINCLTFHSTHPDGESTWISPGDTRVLIENGDLICGIVCKKTVGTAGGGLIHTIMNEQ 294
Query: 364 GPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
GP+ A NF + Q V+ + NGFS+G+ D
Sbjct: 295 GPEAAKNFLNGAQTVINYWLLQNGFSIGIGD 325
>Q2PYR5_9FUNG (tr|Q2PYR5) DNA-directed RNA polymerase (Fragment) OS=Mortierella
verticillata GN=RPB1 PE=3 SV=1
Length = 1016
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 100/345 (28%), Positives = 162/345 (46%), Gaps = 39/345 (11%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDE 140
+++ + K FS+R+VITGD I+EVG+P IA+ +T+ E V +N+ LQKLV
Sbjct: 264 RLRGNLMGKRVDFSARTVITGDPNLSIDEVGVPRSIARTLTYPELVTPYNIDKLQKLVRN 323
Query: 141 NLCLAYKEGVSTYSLREG--------SKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKH 192
+ + Y +R+ +K L+ G V R I DGD+V NR P+ HK
Sbjct: 324 G---PTEHPGAVYVIRDDGQRIDLRWNKREVPLQLGWKVERHINDGDVVIFNRQPSLHKM 380
Query: 193 SLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLS 252
S+ + + T ++N + P ADFDGD ++L PQS+ +AE+ E+ V +Q++S
Sbjct: 381 SMMGHKIRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSVETRAEITEICMVPRQIVS 440
Query: 253 SHSGNLNLQLSTDSLLSLKMLVKKG-FMDRAAANQLAMFLSLP---LPRPALLKAGSGDS 308
S + + D+L ++ K+ F+ + L M++ LP PA+LK
Sbjct: 441 PQSNKPVMGIVQDTLCGVRKFTKRDCFLTKEMVMNLVMWVPGWEGFLPTPAILKP---KP 497
Query: 309 YWTSIQILQCALPLSFDCTGGRYLIRQSDILEFDLSRDVLPAVIN--EIAASVFFGK--- 363
WT Q+L +P +C Y D E D+S ++ E+ + K
Sbjct: 498 LWTGRQMLSMIIPKGINCIC--YHSTHPDNEESDISPGDTKVIVENGELICGIVCKKTVG 555
Query: 364 --------------GPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
GP+ A FF+ Q V+ + +GFS+G+ D
Sbjct: 556 TSGGGLIHVIMNQHGPEVAKTFFNGCQTVVNYWLLQHGFSIGIGD 600
>M3B0A6_9PEZI (tr|M3B0A6) DNA-directed RNA polymerase OS=Pseudocercospora
fijiensis CIRAD86 GN=MYCFIDRAFT_58269 PE=3 SV=1
Length = 1753
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 96/338 (28%), Positives = 162/338 (47%), Gaps = 27/338 (7%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLV-- 138
+++ + K FS+R+VITGD +++VG P A+ +TF ERV L+N+ LQ+LV
Sbjct: 348 RLRGNLMGKRVDFSARTVITGDPNLDLDQVGCPRSTARILTFPERVTLYNIHKLQELVRN 407
Query: 139 --DENLCLAY--KEGVSTYSLREGSK-GHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHS 193
+E+ + +E S LR + G L+ G IV R I+DGD + NR P+ HK S
Sbjct: 408 GPNEHPGAKHIIREDGSRIDLRYHKRAGEIQLQLGWIVERHIVDGDYIIFNRQPSLHKES 467
Query: 194 LQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSS 253
+ V + T ++N + P ADFDGD +++ PQ +AEV L +V ++S
Sbjct: 468 MMGHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQGHETRAEVANLCAVPHNIVSP 527
Query: 254 HSGNLNLQLSTDSLLSLKMLVKKG-FMDRAAANQLAMFL---SLPLPRPALLKAGSGDSY 309
+ + D++ + M+ ++ MD + M++ +P PA+LK
Sbjct: 528 QKNGPLMGIVQDTMAGIWMMTRRDTMMDYEQVMNILMWVPGWDGVIPTPAILKPS---PR 584
Query: 310 WTSIQILQCALPLSFDC-------------TGGRYLIRQSDILEFDLSRDVLPAVINEIA 356
WT QI+ LPL + LI+ +++ ++ ++ A +
Sbjct: 585 WTGKQIISLGLPLGLNIFRKSEEGDIPLLEKEEPVLIQNGELVWGRFTKKLVGASGGGVV 644
Query: 357 ASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
+F KGP + FF+ Q + + +GFSVG+ D
Sbjct: 645 HYIFNDKGPDATVEFFNAAQRICCYWLLHHGFSVGIGD 682
>Q2PYS6_9FUNG (tr|Q2PYS6) DNA-directed RNA polymerase (Fragment) OS=Polychytrium
aggregatum GN=RPB1 PE=3 SV=1
Length = 1016
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 97/341 (28%), Positives = 162/341 (47%), Gaps = 30/341 (8%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVD- 139
+++ + K FS+R+VITGD I++VG+P IA+ +TF E V +N+ LQK V
Sbjct: 272 RLRGNLMGKRVDFSARTVITGDPNLSIDQVGVPRSIARNLTFPENVTPYNIARLQKYVQN 331
Query: 140 ---ENLCLAY--KEGVSTYSLREGSKGH-TYLKPGQIVHRRIMDGDIVFINRPPTTHKHS 193
E+ Y ++ LR G +L+PG V R +MD D+V NR P+ HK S
Sbjct: 332 GPMEHPGAKYVIRDNGERIDLRYSKVGRDIHLQPGYKVERHLMDDDVVIFNRQPSLHKMS 391
Query: 194 LQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSS 253
+ V + T ++N + P ADFDGD ++L PQS +AE+ EL V KQ+++
Sbjct: 392 MMGHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSYETRAEIQELCMVPKQIVTP 451
Query: 254 HSGNLNLQLSTDSLLSLKMLVKKG-FMDRAAANQLAMFL---SLPLPRPALLKAGSGDSY 309
+ + D+L +++ ++ F+ + L M++ +P P ++K
Sbjct: 452 QKNGPCMGIVQDTLCAIRKFTRRDCFLSKDMVMNLLMWVPDWDGTVPTPCIIKP---IPL 508
Query: 310 WTSIQILQCALPL--------------SFDCTGG--RYLIRQSDILEFDLSRDVLPAVIN 353
WT Q++ +P D + G + I ++L L + + + N
Sbjct: 509 WTGKQMMSLIIPRINMVGYHMAHPDDEKSDISPGDTKVYIEDGELLTGILCKKTVGSSQN 568
Query: 354 EIAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
I F GP+ A FF+ Q ++ + NGFS+G+ D
Sbjct: 569 GIIHITFNEHGPEAAKGFFNSCQLIVNYWLLHNGFSIGIGD 609
>F8S1G7_9EUKA (tr|F8S1G7) DNA-directed RNA polymerase (Fragment) OS=Percolomonas
cosmopolitus GN=RPB1 PE=3 SV=1
Length = 1028
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 103/355 (29%), Positives = 170/355 (47%), Gaps = 50/355 (14%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDE 140
++++ + K FS+R+VIT D I++VG+P+ IA +TF ERV L+NM L++ V+
Sbjct: 254 RLRNNLMGKRVDFSARTVITPDPNLEIDQVGVPISIASNMTFPERVTLYNMERLKEKVEN 313
Query: 141 N------LCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSL 194
+ +K+G S + S + L+PG IV R + D D++ NR PT HK S+
Sbjct: 314 GSEYPGAKFIIHKDGTSV-DVELASDEYKQLQPGYIVERHVEDDDLILFNRQPTLHKMSM 372
Query: 195 QALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSH 254
V + T ++N + P ADFDGD ++L PQSL AKAE+ E+ V K ++S+
Sbjct: 373 MGHRVKVLPYSTFRLNVSVTSPYNADFDGDEMNLHLPQSLGAKAELQEMMMVSKNIVSTQ 432
Query: 255 SGNLNLQLSTDSLLSLKMLVKKG-FMDRAAANQLAMFL----SLPLPRPALLKAGSGDSY 309
+ + D+LL ++ K+ F+++ M L + LP+P +LK
Sbjct: 433 GNAPVIAIVQDALLGSVLMTKRDVFLEKDIMMNCCMRLKENFNGELPQPCILKP---KQL 489
Query: 310 WTSIQILQCALPLSFDCTGGRYLIRQSD-------ILEFDLSRDVLP----------AVI 352
W+ Q+ L C L R+++ I+ + D+ P +I
Sbjct: 490 WSGKQLFSLVLK---GCEVN--LFREANQYDDVKKIMGKEFDEDICPMDTKVVISRGELI 544
Query: 353 NEIAASVFFGKGPQ-------------EALNFFDVLQPVLMESIFSNGFSVGLHD 394
+ +A GKG EA NF + LQ V+ + +G+S+G+ D
Sbjct: 545 SGVADKRTLGKGGGSLIHTIFNEYSFIEASNFLNTLQWVVNYWMLQHGYSIGVED 599
>A5H294_9LECA (tr|A5H294) DNA-directed RNA polymerase (Fragment) OS=Degelia
plumbea GN=RPB1 PE=3 SV=1
Length = 1002
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 103/351 (29%), Positives = 170/351 (48%), Gaps = 30/351 (8%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLV-- 138
+++ + K FS+R+VITGD ++EVG+P IA+ +T+ E V +N+ L +LV
Sbjct: 270 RLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKN 329
Query: 139 --DENLCLAY--KEGVSTYSLREGSK-GHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHS 193
+E+ Y +E LR + G L+ G V R I+DGD + NR P+ HK S
Sbjct: 330 GPNEHPGAKYVIRESGERIDLRHHKRAGEISLQYGWKVERHIIDGDFIIFNRQPSLHKES 389
Query: 194 LQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSS 253
V + T ++N + P ADFDGD ++L PQS +A + +L V ++S
Sbjct: 390 TMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAGINQLCMVPLNIVSP 449
Query: 254 HSGNLNLQLSTDSLLSLKMLVKKG-FMDRAAANQLAMFLSLP-----LPRPALLKAGSGD 307
+ + D+L + L ++ F+ + + + L +P LP+PA+LK
Sbjct: 450 QRNGPLMGIVQDTLCGIYKLCRRDVFLSKEQV--MNILLWIPDWDGILPQPAILKP---R 504
Query: 308 SYWTSIQILQCALPLSFDCT--GGR---------YLIRQSDILEFDLSRDVLPAVINEIA 356
WT QI+ +P + T GG L+ ++ LS+ + A + I
Sbjct: 505 PKWTGKQIISLVIPSGLNLTRAGGEGFSPLNDDGLLVSGGKLMYGLLSKKSVGATSSGII 564
Query: 357 ASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD-FSISGAVKRVTD 406
+F KGP+ A+ FF+ Q V+ + NGFS+G+ D G +K++ D
Sbjct: 565 HIIFNEKGPEVAMKFFNGAQTVVNYWLLHNGFSIGIGDTIPDRGTIKQIED 615
>Q5KGG3_CRYNJ (tr|Q5KGG3) DNA-directed RNA polymerase OS=Cryptococcus neoformans
var. neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=CNE03720 PE=3 SV=1
Length = 1786
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 100/356 (28%), Positives = 170/356 (47%), Gaps = 32/356 (8%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDE 140
+M+ + K FS+R+VITGD ++++VG+P IA +T+ ERV +N+ +LQ LV
Sbjct: 351 RMRGNLMGKRVDFSARTVITGDPNLQLDQVGVPKSIAMTLTYPERVTPYNIVYLQTLV-- 408
Query: 141 NLCLAYKEGVSTYSLREGSKGH-TYLKPGQ--------IVHRRIMDGDIVFINRPPTTHK 191
N A G Y G + Y K G+ IV R + DGD V NR P+ HK
Sbjct: 409 NNGPATYPGARYYVKDTGERVDLKYRKSGEPISLQFGWIVERHLKDGDYVLFNRQPSLHK 468
Query: 192 HSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLL 251
S+ + V + + T ++N + P ADFDGD ++L PQS +AE+ ++ V +Q++
Sbjct: 469 MSMMSHRVKLMNYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQIAWVPRQIV 528
Query: 252 SSHSGNLNLQLSTDSLLSL-KMLVKKGFMDRAAANQLAMFLSL---PLPRPALLKAGSGD 307
S + + + D+L + K ++ F+D + ++L +P PA+ K
Sbjct: 529 SPQANKPVMGIVQDTLCGIRKFTLRDNFLDWLQVQHILLWLPEWDGTIPPPAIFKP---K 585
Query: 308 SYWTSIQILQCALPLS-------------FDCTGGRYLIRQSDILEFDLSRDVLPAVINE 354
WT Q+L +P D T LI +++ + +++ + N
Sbjct: 586 PMWTGKQLLSMTIPKGINITYKNNEKPSPIDVTDENVLIENGELVHGTIVKNMAGSANNG 645
Query: 355 IAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDFSISGA-VKRVTDRNI 409
+ +F G A +FF +Q V+ + GFSVG+ D + A + +T+R +
Sbjct: 646 LVHVIFRELGHIAARDFFSAVQRVVNYWLLHFGFSVGIGDTIVDKATMAGITNRMV 701
>F5HIN3_CRYNB (tr|F5HIN3) DNA-directed RNA polymerase OS=Cryptococcus neoformans
var. neoformans serotype D (strain B-3501A) GN=CNBE3710
PE=3 SV=1
Length = 1786
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 100/356 (28%), Positives = 170/356 (47%), Gaps = 32/356 (8%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDE 140
+M+ + K FS+R+VITGD ++++VG+P IA +T+ ERV +N+ +LQ LV
Sbjct: 351 RMRGNLMGKRVDFSARTVITGDPNLQLDQVGVPKSIAMTLTYPERVTPYNIVYLQTLV-- 408
Query: 141 NLCLAYKEGVSTYSLREGSKGH-TYLKPGQ--------IVHRRIMDGDIVFINRPPTTHK 191
N A G Y G + Y K G+ IV R + DGD V NR P+ HK
Sbjct: 409 NNGPATYPGARYYVKDTGERVDLKYRKSGEPISLQFGWIVERHLKDGDYVLFNRQPSLHK 468
Query: 192 HSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLL 251
S+ + V + + T ++N + P ADFDGD ++L PQS +AE+ ++ V +Q++
Sbjct: 469 MSMMSHRVKLMNYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQIAWVPRQIV 528
Query: 252 SSHSGNLNLQLSTDSLLSL-KMLVKKGFMDRAAANQLAMFLSL---PLPRPALLKAGSGD 307
S + + + D+L + K ++ F+D + ++L +P PA+ K
Sbjct: 529 SPQANKPVMGIVQDTLCGIRKFTLRDNFLDWLQVQHILLWLPEWDGTIPPPAIFKP---K 585
Query: 308 SYWTSIQILQCALPLS-------------FDCTGGRYLIRQSDILEFDLSRDVLPAVINE 354
WT Q+L +P D T LI +++ + +++ + N
Sbjct: 586 PMWTGKQLLSMTIPKGINITYKNNEKPSPIDVTDENVLIENGELVHGTIVKNMAGSANNG 645
Query: 355 IAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDFSISGA-VKRVTDRNI 409
+ +F G A +FF +Q V+ + GFSVG+ D + A + +T+R +
Sbjct: 646 LVHVIFRELGHIAARDFFSAVQRVVNYWLLHFGFSVGIGDTIVDKATMAGITNRMV 701
>A4RTE2_OSTLU (tr|A4RTE2) DNA-directed RNA polymerase OS=Ostreococcus lucimarinus
(strain CCE9901) GN=OSTLU_24022 PE=3 SV=1
Length = 1395
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 105/358 (29%), Positives = 171/358 (47%), Gaps = 48/358 (13%)
Query: 93 FSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDENLC-------LA 145
FS+R+VI+ D RI+EVG+P+ IA+ +T+ E VN HNM L++ V + +
Sbjct: 377 FSARTVISPDPNLRIDEVGVPIHIAKTMTYPEVVNKHNMVMLRERVRNGMAKHPGANFVK 436
Query: 146 YKEGVSTYSLREGSKGH--TYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALVVYIHD 203
+ G Y L+ G + + LK G IV R + DGDI+ NR P+ HK S+ A I +
Sbjct: 437 FASGGMQY-LKYGDRRKIASELKFGDIVERHLHDGDILLFNRQPSLHKMSIMAHKARIME 495
Query: 204 DHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHSGNLNLQLS 263
T++ N +C P ADFDGD +++ PQ+ A+AE ++L V+ L + +G + + +
Sbjct: 496 CRTLRFNECVCTPYNADFDGDEMNIHCPQTEEARAEAMQLMGVQHNLCTPKNGEILIAAT 555
Query: 264 TDSLLSLKML-VKKGFMDRAAANQLAMF-----LSLPLPRPALLKAGSGDSYWTSIQILQ 317
D L + +L +K F DR+ L + LS+ LP PA+LK WT Q+
Sbjct: 556 QDFLTAAFLLTIKDAFFDRSQFGSLVAYMGDALLSVDLPTPAILKP---IELWTGKQVFS 612
Query: 318 CAL-PLSFD--------------------CTGGRYL-IRQSDILEFDLSRDVLPAVINEI 355
+ P + D C Y+ I+ S+I+ L + L +
Sbjct: 613 VLIRPKASDHIYVNLEVAEKLYNKKDKTMCPDDGYVCIQNSEIISGQLGKATLGS---GN 669
Query: 356 AASVFF----GKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDFSISGAVKRVTDRNI 409
+ +F+ G + A N + L + + + GFS+G+ D S + + R I
Sbjct: 670 KSGLFYVLNIEYGAEAAANAMNRLAKLSARWLGTRGFSIGIDDVSPAAELSAEKGRRI 727
>A1YIB3_9FUNG (tr|A1YIB3) DNA-directed RNA polymerase (Fragment) OS=Capniomyces
stellatus GN=RPB1 PE=3 SV=1
Length = 1024
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 99/343 (28%), Positives = 163/343 (47%), Gaps = 33/343 (9%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLV-- 138
+++ + K FS+R+VI GD I++VG+P IA+ +T+ E V +N+ LQ++V
Sbjct: 274 RLRGNLMGKRVDFSARTVIAGDPNIEIDQVGVPRSIAKNLTYPEVVTPYNIDKLQEMVQN 333
Query: 139 --DENLCLAY--KEGVSTYSLREGSKGHTY-LKPGQIVHRRIMDGDIVFINRPPTTHKHS 193
+E+ Y ++ LR +G L+ G V R +MD D+V NR P+ HK S
Sbjct: 334 GPNEHPGAKYVIRDSGERIDLRYSKRGGDIPLQIGYRVERNLMDDDVVIFNRQPSLHKMS 393
Query: 194 LQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSS 253
+ V + T ++N + P ADFDGD ++L PQS +AE+ EL V KQ++S
Sbjct: 394 MMGHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHLPQSEETRAEIRELCMVPKQIVSP 453
Query: 254 HSGNLNLQLSTDSLLSLKMLVKKGFMDRAAANQLAMFLSLP-----LPRPALLKAGSGDS 308
+ + + D+L +L M K+ + R +++ L +P +P P +LK
Sbjct: 454 QANKPVMGIVQDTLCALLMFTKRDTLMRLDM-VMSLLLKVPGWDGLIPTPCILKP---QP 509
Query: 309 YWTSIQILQCALPLSFDC-----------------TGGRYLIRQSDILEFDLSRDVLPAV 351
W+ QI +P +C R +I ++L + + + AV
Sbjct: 510 LWSGKQIFSLIIPKGINCYTFFKDHPDNETAWCSPGDSRVVIENGELLSGIICKQTVGAV 569
Query: 352 INEIAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
I +F G + A FF Q V+ + SNGFS+G+ D
Sbjct: 570 RGGIVHVIFNELGSEAAKIFFGGTQRVVNLWMLSNGFSIGIGD 612
>A1YIB8_9GLOM (tr|A1YIB8) DNA-directed RNA polymerase (Fragment) OS=Gigaspora
gigantea GN=RPB1 PE=3 SV=1
Length = 1039
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 97/347 (27%), Positives = 163/347 (46%), Gaps = 39/347 (11%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDE 140
+++ + K FS+R+VITGD +++VG+P IAQ +TF E V N+ LQ LV+
Sbjct: 279 RLRGNLMGKRVDFSARTVITGDPNISVDQVGVPKSIAQNLTFPELVTPFNIDLLQGLVEN 338
Query: 141 NLCLAYKEGVSTYSLRE-----------GSKGHTYLKPGQIVHRRIMDGDIVFINRPPTT 189
+ + Y +R+ G G L+ G V R + DGDI+ NR P+
Sbjct: 339 GPSV---HPGAKYVIRDTGERIDLKHTSGMSGGVRLQLGWKVERHLNDGDIIIFNRQPSL 395
Query: 190 HKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQ 249
HK S+ V + T ++N + P ADFDGD +++ PQS+ KAE+ E+ V KQ
Sbjct: 396 HKMSMMGHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNMHVPQSVETKAEISEICMVPKQ 455
Query: 250 LLSSHSGNLNLQLSTDSLLSLKMLVKKG-FMDRAAANQLAMFL---SLPLPRPALLKAGS 305
++S S + + D+L +++ K+ F+ + + M++ LP P +LK
Sbjct: 456 VVSPQSNKPVMGIVQDTLCAVRKFTKRDCFLTKDLVMNILMWVLDWDGRLPIPCILKP-- 513
Query: 306 GDSYWTSIQILQCALPLSFDCTGGRY------------------LIRQSDILEFDLSRDV 347
WT QIL +P + R+ LI ++L + +
Sbjct: 514 -IPLWTGKQILSMIIPKGINSDNLRHSGHPENEHSDISPGDTKVLIEDGELLCGIVCKKT 572
Query: 348 LPAVINEIAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
+ A + + GP++A +F + Q V+ + + NGFS+G+ D
Sbjct: 573 VGATHQGLVHVIMNEMGPEKAKDFLNGCQAVVNQWLLQNGFSIGIGD 619
>Q0PQ13_9LECA (tr|Q0PQ13) DNA-directed RNA polymerase (Fragment) OS=Canoparmelia
caroliniana GN=RPB1 PE=3 SV=1
Length = 1016
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 99/338 (29%), Positives = 166/338 (49%), Gaps = 29/338 (8%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLV-- 138
+++ + K FS+R+VITGD ++EVG+P IA+ +T+ E V +N+ L +LV
Sbjct: 270 RLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKN 329
Query: 139 --DENLCLAY--KEGVSTYSLREGSK-GHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHS 193
+E+ Y ++ LR + G L+ G V R I+DGD + NR P+ HK S
Sbjct: 330 GPNEHPGAKYVIRDTGERIDLRHHKRAGEISLQYGWKVERHIVDGDYIIFNRQPSLHKES 389
Query: 194 LQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSS 253
+ V + T ++N + P ADFDGD ++L PQS +AE+ +L V ++S
Sbjct: 390 MMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCMVPLNIVSP 449
Query: 254 HSGNLNLQLSTDSLLSL-KMLVKKGFMDRAAANQLAMFLSLP-----LPRPALLKAGSGD 307
+ + D+L + KM + F+ + + + L +P +P+PA++K
Sbjct: 450 QRNGPLMGIVQDTLCGIYKMCRRDVFLTKEQV--MNILLWVPDWDGVIPQPAIVKP---L 504
Query: 308 SYWTSIQILQCALPLSFDCTGGR-----------YLIRQSDILEFDLSRDVLPAVINEIA 356
+ WT QIL +P + G LI +++ L++ + A +
Sbjct: 505 AMWTGKQILSLVIPTGLNLLRGSEEGFSPLNDDGLLISGGELMYGLLAKKTVGASGGGLI 564
Query: 357 ASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
VF KGP+ A+NFF+ Q V+ + NGFS+G+ D
Sbjct: 565 HIVFNEKGPEAAMNFFNGAQTVVNYWLLHNGFSIGIGD 602
>A1YIA6_TRIRU (tr|A1YIA6) DNA-directed RNA polymerase (Fragment) OS=Trichophyton
rubrum GN=RPB1 PE=3 SV=1
Length = 1015
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 96/345 (27%), Positives = 165/345 (47%), Gaps = 36/345 (10%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDE 140
+++ + K FS+R+VITGD ++EVG+P+ IAQ +T+ E V +N+ L +LVD
Sbjct: 267 RLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPISIAQTLTYPEVVTPYNIHRLGQLVDN 326
Query: 141 NLCL------AYKEGVSTYSLR--EGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKH 192
+ + LR +G G +L+ G V R +MDGD + NR P+ HK
Sbjct: 327 GPDVHPGARYVIRSSGERIDLRHHKGGGGRNFLQWGWKVERHLMDGDFILFNRQPSLHKE 386
Query: 193 SLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLS 252
S+ + V + T ++N + P ADFDGD ++L PQS A+AE+ +L V ++S
Sbjct: 387 SMMSHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEEARAELNQLCLVPLNIVS 446
Query: 253 SHSGNLNLQLSTDSLLSLKMLVKKG-FMDRAAANQLAMFLSLP-----LPRPALLKAGSG 306
+ + D+L + + ++ F+ + + + L +P LP+PA+LK
Sbjct: 447 PQRNGPLMGIVQDTLCGIYKICRRDVFLTKEQV--MNVLLWVPDWDGVLPQPAILKP--- 501
Query: 307 DSYWTSIQILQCALPLSFD-----------------CTGGRYLIRQSDILEFDLSRDVLP 349
W+ Q++ LP + G L+ +++ S+ +
Sbjct: 502 RPRWSGKQMISMVLPSGLNLLRIDKDKSPISEKFSPLADGGVLVHGGELMYGMFSKKTVG 561
Query: 350 AVINEIAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
A I ++F GP A++FF+ Q V+ + NGFS+G+ D
Sbjct: 562 ASGGGIVHTIFNEYGPDAAMSFFNGAQAVVNYWLLHNGFSIGIGD 606
>A1YIA8_9ASCO (tr|A1YIA8) DNA-directed RNA polymerase (Fragment) OS=Taphrina
deformans GN=RPB1 PE=3 SV=1
Length = 1001
Score = 134 bits (337), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 102/343 (29%), Positives = 163/343 (47%), Gaps = 38/343 (11%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLV-- 138
+++ + K FS+R+VITGD ++EVG+P IA+ +T+ ERV N+ LQ+LV
Sbjct: 258 RLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPERVTPFNIHKLQQLVRN 317
Query: 139 --DENLCLAY--KEGVSTYSLR-EGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHS 193
DE+ Y ++ LR + G T L+ G V R + +GD+V NR P+ HK S
Sbjct: 318 GPDEHPGAKYILRDTGERIDLRYNKNAGDTPLQYGWTVERHLQNGDVVIFNRQPSLHKMS 377
Query: 194 LQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSS 253
+ V + T ++N + P ADFDGD ++L PQS +AE+ E+ V +Q+L+
Sbjct: 378 MMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEITEICMVPRQILAP 437
Query: 254 HSGNLNLQLSTDSLLSL-KMLVKKGFMDRAAANQLAMFL---SLPLPRPALLKAGSGDSY 309
+ + + D+L + K ++ FM ++ + M++ + +P PA+LK
Sbjct: 438 QANKPCMGIVQDALCGIRKFTIRDTFMAKSHVMNILMWVPGWNGIVPPPAILKP---QQL 494
Query: 310 WTSIQILQCALPLSFDCTGGRYLIRQSDILEFDLSRDV---------LPAVINEIAASVF 360
WT QIL +P + + R D D DV L V+N+
Sbjct: 495 WTGKQILSMVIPKGINHS------RNDDKQGLDNPNDVGMMIEDGEILYGVVNKKTVGSS 548
Query: 361 FG---------KGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
G KG + +FF Q V+ NGFS+G+ D
Sbjct: 549 QGGLIHIIMKEKGWEACRDFFTATQMVVNYWFLHNGFSIGIGD 591
>A7J588_9LECA (tr|A7J588) DNA-directed RNA polymerase (Fragment) OS=Heterodermia
vulgaris GN=RPB1 PE=3 SV=1
Length = 996
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 95/339 (28%), Positives = 165/339 (48%), Gaps = 33/339 (9%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDE 140
+++ + K FS+R+VITGD ++EVG+P IA+ +T+ E V +N+ L +LV
Sbjct: 252 RVRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKN 311
Query: 141 NLCLAYKEGVSTYSLREGSK----------GHTYLKPGQIVHRRIMDGDIVFINRPPTTH 190
+ + Y +R+ + G L+ G V R I+DGD + NR P H
Sbjct: 312 G---PNEHPGARYVIRDTGERIDLRFHRRAGDLVLQYGWKVERHIVDGDXIIFNRQPYXH 368
Query: 191 KHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQL 250
K S+ V + T ++N + P ADFDGD ++L PQS +AEV +L V +
Sbjct: 369 KESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVNQLCMVPLNI 428
Query: 251 LSSHSGNLNLQLSTDSLLSLKMLVKKG-FMDRAAANQLAMFLSLP-----LPRPALLKAG 304
+S + + + D+L + + ++ F+++ + + L +P +P+PA+LK
Sbjct: 429 VSPQRNSPLMGIVQDTLCGIYKICRRDVFLNQEQV--MNILLWVPEWDGIIPQPAVLKP- 485
Query: 305 SGDSYWTSIQILQCALPLSFDCTGGR---------YLIRQSDILEFDLSRDVLPAVINEI 355
WT QI+ +P + G + +++ L++ V+ A + I
Sbjct: 486 --TPLWTGKQIVSLVIPAGLNLVKGSDYAPLKDDGIFVSSGELMFGLLNKKVVGAAMGGI 543
Query: 356 AASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
V+ KGP+ A+NFF+ Q V+ + NGFS+G+ D
Sbjct: 544 IHIVYNEKGPEAAMNFFNGAQAVVNYWLLHNGFSIGIGD 582
>H2EQN9_MORIS (tr|H2EQN9) DNA-directed RNA polymerase (Fragment) OS=Mortierella
isabellina GN=RPB1 PE=3 SV=1
Length = 460
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 100/351 (28%), Positives = 160/351 (45%), Gaps = 45/351 (12%)
Query: 96 RSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDENLCLAYKEGVSTYSL 155
R+VITGD ++EVG+P IA+ +T+ E V +NM LQ LV + + Y +
Sbjct: 1 RTVITGDPNLSVDEVGVPRSIARTLTYPEIVTPYNMDKLQTLVRNG---PTEHPGAKYVI 57
Query: 156 REGSK----------GHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALVVYIHDDH 205
R+ + G L+ G V R I DGD+V NR P+ HK S+ + +
Sbjct: 58 RDTGERIDLRYHKRAGEIPLQYGYKVERHINDGDVVIFNRQPSLHKMSMMGHRIRVMPYS 117
Query: 206 TVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHSGNLNLQLSTD 265
T ++N + P ADFDGD ++L PQSL +AE+ E+ V KQ++S S + + D
Sbjct: 118 TFRLNLSVTSPYNADFDGDEMNLHVPQSLETRAEITEICMVPKQIVSPQSNKPVMGIVQD 177
Query: 266 SLLSLKMLVKK-GFMDRAAANQLAMFL---SLPLPRPALLKAGSGDSYWTSIQILQCALP 321
+L + ++ F+ + + M++ LP PA+LK WT QIL +P
Sbjct: 178 TLAGVNKFTRRDSFLSKDLVMNIVMWVPDWDGYLPTPAILKP---KPMWTGKQILSMIIP 234
Query: 322 LSFDCT--------GGRYLIRQSDILEFDLSRDVLPAVINEIAASVFFG---------KG 364
+C G I D F + +++ ++ + G +G
Sbjct: 235 KGINCQTFHFNHPDGETTWISPRDTRVFIENGELICGIVCKKTVGTASGGLIHTIMNEQG 294
Query: 365 PQEALNFFDVLQPVLMESIFSNGFSVGLHDF--------SISGAVKRVTDR 407
P+ A NF + Q V+ + NGFS+G+ D +I+G + DR
Sbjct: 295 PEAAKNFLNGAQTVVNYWLLQNGFSIGIGDTIADRDTMENITGLISSAKDR 345
>M7NUD9_9ASCO (tr|M7NUD9) Uncharacterized protein OS=Pneumocystis murina B123
GN=PNEG_00871 PE=4 SV=1
Length = 1666
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 99/341 (29%), Positives = 169/341 (49%), Gaps = 34/341 (9%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLV-- 138
+++ + K FS+R+VITGD ++E+G+P IA+ +T+ E V +N+ LQ+LV
Sbjct: 339 RLRGNLMGKRVDFSARTVITGDPNLSLDELGVPRSIARILTYPETVTPYNIHKLQELVRN 398
Query: 139 --DENLCLAY--KEGVSTYSLREGSK-GHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHS 193
+E+ Y ++ LR + G L+ G V R I DGD+V NR P+ HK S
Sbjct: 399 GPNEHPGAKYIIRDTGERIDLRYHKRAGDIPLQYGWRVERHITDGDVVIFNRQPSLHKMS 458
Query: 194 LQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSS 253
+ V + T +IN + P ADFDGD ++L PQS +AE++E+ V KQ++S
Sbjct: 459 MMGHRVKVMPYSTFRINLSVTPPYNADFDGDEMNLHVPQSEETRAEIIEICMVPKQIVSP 518
Query: 254 HSGNLNLQLSTDSLLSLKMLVKK-GFMDRAAANQLAMFLSLP-----LPRPALLKAGSGD 307
S + + D+L ++ L ++ F+ R + + L +P +P PA++K
Sbjct: 519 QSNKPVMGIVQDTLAGVRKLTRRDNFLSRDQV--MNILLWVPEWDGNMPSPAIIKP---K 573
Query: 308 SYWTSIQILQCAL--------------PLSFDCTGGRYLIRQSDILEFDLSRDVLPAVIN 353
WT QIL + P++ D G ++ +I+ + + + A
Sbjct: 574 PLWTGKQILSMVIPKGINLIRDDEKQTPMTPDDKG--MMLEDGEIIYGIVDKKTVGASQG 631
Query: 354 EIAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
+ ++ KGP+ FF+ +Q V+ + NGFS+G+ D
Sbjct: 632 GLVHTIMREKGPEVCRVFFNGIQMVVNYWLLHNGFSIGIGD 672
>I4Y971_WALSC (tr|I4Y971) DNA-directed RNA polymerase OS=Wallemia sebi (strain
ATCC MYA-4683 / CBS 633.66) GN=WALSEDRAFT_52154 PE=3
SV=1
Length = 1752
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 95/338 (28%), Positives = 164/338 (48%), Gaps = 29/338 (8%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLV-- 138
+++ + K FS+R+VITGD ++EVG+P IA+ +T+ ERV +N+ +LQ+LV
Sbjct: 346 RLRGNLMGKRVDFSARTVITGDPNLELDEVGVPFSIARTLTYPERVTPYNILYLQELVRN 405
Query: 139 --DENLCLAY--KEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSL 194
+E Y ++ LR + T+L+ G IV R + DGD V NR P+ HK S+
Sbjct: 406 GPNEYPGARYVVRDTGERIDLRYNRRADTFLQYGWIVERHLKDGDFVLFNRQPSLHKMSM 465
Query: 195 QALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSH 254
V + T ++N + P ADFDGD ++L PQS +AE+ ++ SV +Q++S
Sbjct: 466 MCHRVKLMPYSTFRLNLSVTPPYNADFDGDEMNLHVPQSEETRAEMSQIASVTRQIVSPQ 525
Query: 255 SGNLNLQLSTDSLLSL-KMLVKKGFMDRAAANQLAMFLSLP-----LPRPALLKAGSGDS 308
+ + + + D+L + K+ ++ F+D + M+ +P +P PA++K
Sbjct: 526 ANSPVMGIVQDALCGVRKLTLRDTFLDSKQVANILMW--VPGWDGIVPTPAIMKP---KP 580
Query: 309 YWTSIQILQCALPLSFD------------CTGGRYLIRQSDILEFDLSRDVLPAVINEIA 356
WT QIL +P + I +I+ + + + +
Sbjct: 581 LWTGKQILSLCIPRGINVFRSNEQKSSAPVDDAGVCIEDGNIMYGAIDKSTVGKSQGGLV 640
Query: 357 ASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
+F KG +F LQ V+ + +GFS+G+ D
Sbjct: 641 HVIFREKGHIICKDFLSGLQVVVNYWMLHHGFSIGIGD 678
>O61119_DICDI (tr|O61119) DNA-directed RNA polymerase (Fragment) OS=Dictyostelium
discoideum GN=RPB1 PE=3 SV=1
Length = 757
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 103/353 (29%), Positives = 173/353 (49%), Gaps = 31/353 (8%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLV-- 138
+++ + K FS+R+VIT D I++VG+P IA +T+ E V N+ +++L+
Sbjct: 266 RIRGNLMGKRVDFSARTVITADPNLSIDQVGVPRSIALNLTYPETVTPFNIDKMRELIRN 325
Query: 139 --DENLCLAY--KEGVSTYSLREGSK-GHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHS 193
E+ Y +E + + LR K T+L+ G V R I DGD+V NR P+ HK S
Sbjct: 326 GPSEHPGAKYIIREDGTRFDLRFVKKVSDTHLECGYKVERHINDGDVVIFNRQPSLHKMS 385
Query: 194 LQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSS 253
+ + + T ++N + P ADFDGD ++L PQ+L +AEV+E+ V +Q++S
Sbjct: 386 MMGHRIKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTLETRAEVIEIMMVPRQIVSP 445
Query: 254 HSGNLNLQLSTDSLLSLKMLVKKG-FMDRAAANQLAMFLSL---PLPRPALLKAGSGDSY 309
S + + D+LL ++ K+ FM++ + M+L +P PA+LK
Sbjct: 446 QSNRPVMGIVQDTLLGSRLFTKRDCFMEKDLVMNILMWLPSWDGKVPPPAILKP---KQL 502
Query: 310 WTSIQILQCALP----LSF----------DCTGG--RYLIRQSDILEFDLSRDVLPAVIN 353
WT Q+ +P + F +C+ G R +I +S++L L + L A
Sbjct: 503 WTGKQLFSLIIPDINLIRFTSTHNDKKPNECSAGDTRVIIERSELLAGILCKRSLGAANG 562
Query: 354 EIAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD-FSISGAVKRVT 405
I V G F D Q V+ + + GF++G+ D + S + +VT
Sbjct: 563 SIIHVVMNEHGHDTCRLFIDQTQTVVNHWLINRGFTMGIGDTIADSATMAKVT 615
>A5H276_9LECA (tr|A5H276) DNA-directed RNA polymerase (Fragment) OS=Cetraria
islandica GN=RPB1 PE=3 SV=1
Length = 1003
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 99/338 (29%), Positives = 167/338 (49%), Gaps = 29/338 (8%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLV-- 138
+++ + K FS+R+VITGD ++EVG+P IA+ +T+ E V +N+ L +LV
Sbjct: 271 RLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPEXVTPYNIQKLHQLVKN 330
Query: 139 --DENLCLAY--KEGVSTYSLREGSK-GHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHS 193
+E+ Y ++ LR + G L+ G V R I+DGD + NR P+ HK S
Sbjct: 331 GPNEHPGAKYVIRDTGERIDLRHHKRAGEISLQYGWKVERHIVDGDYIIFNRQPSLHKES 390
Query: 194 LQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSS 253
+ V + T ++N + P ADFDGD ++L PQS +AE+ +L V ++S
Sbjct: 391 MMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCMVPLNIVSP 450
Query: 254 HSGNLNLQLSTDSLLSL-KMLVKKGFMDRAAANQLAMFLSLP-----LPRPALLKAGSGD 307
+ + D+L + KM + F+ + + + L +P +P+PA++K
Sbjct: 451 QRNGPLMGIVQDTLCGIYKMCRRDVFLTKEQV--MNILLWVPDWDGVIPQPAIVKPL--- 505
Query: 308 SYWTSIQILQCALPLSFDCTGGR-----------YLIRQSDILEFDLSRDVLPAVINEIA 356
+ WT QIL +P + G LI +++ L++ V+ A +
Sbjct: 506 AMWTGKQILSLVIPTGLNLLRGSEEGFSPLNDDGLLISGGELMYGLLNKKVVGASGGGVI 565
Query: 357 ASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
VF KGP+ A++FF+ Q V+ + NGFS+G+ D
Sbjct: 566 HIVFNEKGPEAAMSFFNGAQTVVNYWLLHNGFSIGIGD 603
>A1YIB5_9FUNG (tr|A1YIB5) DNA-directed RNA polymerase (Fragment) OS=Mucor
hiemalis GN=RPB1 PE=3 SV=1
Length = 1009
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 105/360 (29%), Positives = 168/360 (46%), Gaps = 38/360 (10%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDE 140
+++ + K FS+R+VITGD +++VG+P IA+ +T+ E V +N+ LQ LV
Sbjct: 261 RLRGNLMGKRVDFSARTVITGDPNLNLDQVGVPRSIARNLTYPEIVTPYNIDKLQALV-R 319
Query: 141 NLCLAYKEGVSTYSLREGSK----------GHTYLKPGQIVHRRIMDGDIVFINRPPTTH 190
N L + + Y +R+ + G L+ G V R I D D+V NR P+ H
Sbjct: 320 NGPLEHPG--AKYVIRDNGERIDLRYRKRAGEIPLQYGYRVERHINDDDVVIFNRQPSLH 377
Query: 191 KHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQL 250
K S+ V + T ++N + P ADFDGD ++L PQSL +AEV E+ V KQ+
Sbjct: 378 KMSMMGHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSLETRAEVTEICMVPKQI 437
Query: 251 LSSHSGNLNLQLSTDSLLSL-KMLVKKGFMDRAAANQLAMFLSLP---LPRPALLKAGSG 306
+S S + + D+L + K ++ FM + + M++ +P PA+LK
Sbjct: 438 VSPQSNKPVMGIVQDTLCGIRKFTLRDCFMTKDLVMNIVMWVPSWDGYIPPPAILKP--- 494
Query: 307 DSYWTSIQILQCALPLSFDCT--------GGRYLIRQSDILEFDLSRDVLPAVINEIAAS 358
WT QI+ +P +C G LI D + +++ ++ +
Sbjct: 495 KPMWTGKQIVSMVIPKGINCQTFHSTHPDGESTLISPGDTRVIIENGELICGIVCKKTVG 554
Query: 359 VFFGK---------GPQEALNFFDVLQPVLMESIFSNGFSVGLHDFSISGAVKRVTDRNI 409
G GP+ A NF Q V+ + NGFS+G+ D +I+ V T NI
Sbjct: 555 TAGGGLIHTIMNELGPEAAKNFLGGTQQVVNYWLLQNGFSIGIGD-TIADKVSMATITNI 613
>F2SXT8_TRIRC (tr|F2SXT8) DNA-directed RNA polymerase OS=Trichophyton rubrum
(strain ATCC MYA-4607 / CBS 118892) GN=TERG_07396 PE=3
SV=1
Length = 1744
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 96/345 (27%), Positives = 165/345 (47%), Gaps = 36/345 (10%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDE 140
+++ + K FS+R+VITGD ++EVG+P+ IAQ +T+ E V +N+ L +LVD
Sbjct: 351 RLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPISIAQTLTYPEVVTPYNIHRLGQLVDN 410
Query: 141 NLCL------AYKEGVSTYSLR--EGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKH 192
+ + LR +G G +L+ G V R +MDGD + NR P+ HK
Sbjct: 411 GPDVHPGARYVIRSSGERIDLRHHKGGGGRNFLQWGWKVERHLMDGDFILFNRQPSLHKE 470
Query: 193 SLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLS 252
S+ + V + T ++N + P ADFDGD ++L PQS A+AE+ +L V ++S
Sbjct: 471 SMMSHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEEARAELNQLCLVPLNIVS 530
Query: 253 SHSGNLNLQLSTDSLLSLKMLVKKG-FMDRAAANQLAMFLSLP-----LPRPALLKAGSG 306
+ + D+L + + ++ F+ + + + L +P LP+PA+LK
Sbjct: 531 PQRNGPLMGIVQDTLCGIYKICRRDVFLTKEQV--MNVLLWVPDWDGVLPQPAILKP--- 585
Query: 307 DSYWTSIQILQCALPLSFD-----------------CTGGRYLIRQSDILEFDLSRDVLP 349
W+ Q++ LP + G L+ +++ S+ +
Sbjct: 586 RPRWSGKQMISMVLPSGLNLLRIDKDKSPISEKFSPLADGGVLVHGGELMYGMFSKKTVG 645
Query: 350 AVINEIAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
A I ++F GP A++FF+ Q V+ + NGFS+G+ D
Sbjct: 646 ASGGGIVHTIFNEYGPDAAMSFFNGAQAVVNYWLLHNGFSIGIGD 690
>E5R1G4_ARTGP (tr|E5R1G4) DNA-directed RNA polymerase OS=Arthroderma gypseum
(strain ATCC MYA-4604 / CBS 118893) GN=MGYG_01527 PE=3
SV=1
Length = 1748
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 95/345 (27%), Positives = 165/345 (47%), Gaps = 36/345 (10%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDE 140
+++ + K FS+R+VITGD ++EVG+P+ IAQ +T+ E V +N+ L +LVD
Sbjct: 351 RLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPISIAQTLTYPEVVTPYNIHRLGQLVDN 410
Query: 141 NLCL------AYKEGVSTYSLR--EGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKH 192
+ + LR +G G +L+ G V R +MDGD + NR P+ HK
Sbjct: 411 GPDVHPGARYVIRSSGERIDLRHHKGGGGRNFLQWGWKVERHLMDGDFILFNRQPSLHKE 470
Query: 193 SLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLS 252
S+ + V + T ++N + P ADFDGD ++L PQS A+AE+ +L V ++S
Sbjct: 471 SMMSHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEEARAELNQLCLVPLNIVS 530
Query: 253 SHSGNLNLQLSTDSLLSLKMLVKKG-FMDRAAANQLAMFLSLP-----LPRPALLKAGSG 306
+ + D+L + + ++ F+ + + + L +P LP+PA+LK
Sbjct: 531 PQRNGPLMGIVQDTLCGIYKICRRDVFLTKEQV--MNLLLWVPDWDGVLPQPAILKP--- 585
Query: 307 DSYWTSIQILQCALPLSFD-----------------CTGGRYLIRQSDILEFDLSRDVLP 349
W+ Q++ LP + G L+ +++ S+ +
Sbjct: 586 RPRWSGKQMISMVLPSGLNLLRIDKDKSPISEKFSPLADGGVLVHGGELMYGMFSKKTVG 645
Query: 350 AVINEIAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
A + ++F GP A++FF+ Q V+ + NGFS+G+ D
Sbjct: 646 ATGGGVVHTIFNEYGPDTAMSFFNGAQRVVNYWLLHNGFSIGIGD 690
>K3WV53_PYTUL (tr|K3WV53) DNA-directed RNA polymerase OS=Pythium ultimum
GN=PYU1_G008832 PE=3 SV=1
Length = 1475
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 97/350 (27%), Positives = 163/350 (46%), Gaps = 39/350 (11%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDE 140
+++ + K FS+R+VIT D I++VG+P IA +T ERV NM ++ +L+
Sbjct: 357 RIRGNLMGKRVDFSARTVITADPNLEIDQVGVPRSIAMNLTVPERVTPFNMAYMHQLISN 416
Query: 141 NLCLAYKEGVSTYSLREG----------SKGHTYLKPGQIVHRRIMDGDIVFINRPPTTH 190
+ + Y +RE +K LK G IV R + D D+V NR P+ H
Sbjct: 417 G---PLEHPGAKYIIREDGNRIDLRYIKNKSDLALKCGWIVERHLRDDDLVLFNRQPSLH 473
Query: 191 KHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQL 250
K S+ A V + D T ++N + P ADFDGD ++L PQS+ A+AE EL V K +
Sbjct: 474 KMSIMAHRVKVFDWSTFRLNLSVTAPYNADFDGDEMNLHVPQSMTARAEAQELMMVHKVV 533
Query: 251 LSSHSGNLNLQLSTDSLLSLKMLVKKG-FMDRAAANQLAMFL---SLPLPRPALL--KAG 304
++ S + + DSLL ++ K+ F+++ L M++ +P PA+L K G
Sbjct: 534 ITPQSNRPVMGIVQDSLLGVQKFTKRDVFVEKDITMGLLMWVLNWDGKVPTPAILVPKKG 593
Query: 305 SGDSY---WTSIQILQCALP----LSFDCT-------------GGRYLIRQSDILEFDLS 344
Y WT Q+ +P + F R ++++ ++L +
Sbjct: 594 ELGKYRPIWTGKQLFSQIVPDINFMGFSSIHNSNEKFTDLAPFDSRVIVQRGELLAGIID 653
Query: 345 RDVLPAVINEIAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
+ V+ + + + KGP E F +Q ++ + F+VG+ D
Sbjct: 654 KKVIGSSAGGLIHNTMLEKGPDETKYFLGAVQKLVNNWLVGRSFTVGVSD 703
>Q0PQ04_9LECA (tr|Q0PQ04) DNA-directed RNA polymerase (Fragment) OS=Mycoblastus
sanguinarius GN=RPB1 PE=3 SV=1
Length = 1016
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 103/365 (28%), Positives = 173/365 (47%), Gaps = 38/365 (10%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLV-- 138
+++ + K FS+R+VITGD ++EVG+P IA+ +T+ E V +N+ L +LV
Sbjct: 270 RLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIHKLHQLVKN 329
Query: 139 --DENLCLAY--KEGVSTYSLREGSK-GHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHS 193
+E+ Y ++ LR + G L+ G V R I+DGD + NR P+ HK S
Sbjct: 330 GPNEHPGAKYVIRDSGERIDLRHHKRAGEISLQYGWKVERHIVDGDYIIFNRQPSLHKES 389
Query: 194 LQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSS 253
+ V + T ++N + GP ADFDGD ++L PQS +AEV L V ++S
Sbjct: 390 MMGHRVRVMPYSTFRLNLSVTGPYNADFDGDEMNLHVPQSEETRAEVSGLCMVPLNIVSP 449
Query: 254 HSGNLNLQLSTDSLLSL-KMLVKKGFMDRAAANQLAMFLSLP-----LPRPALLKAGSGD 307
+ + D+L + KM + F+ + + + L +P +P+PA+ K
Sbjct: 450 QRNGPLMGIVQDTLCGIYKMCRRDVFLSKEQV--MNILLWVPDWDGVIPQPAIFKP---R 504
Query: 308 SYWTSIQILQCALPLSFDCTGGR-----------YLIRQSDILEFDLSRDVLPAVINEIA 356
WT QIL +P + G L+ +++ ++ + A +
Sbjct: 505 PMWTGKQILSLVIPAGLNLLRGSNEGFTSLTDDGLLVSGGELMYGLFNKKSVGATGGGVI 564
Query: 357 ASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDF--------SISGAVKRVTDRN 408
++ KGP+ A+NFF+ Q V+ + NGFS+G+ D I AV R D
Sbjct: 565 HIIYNEKGPEVAMNFFNGAQTVVNYWLLHNGFSIGIGDTIPDRNTIQQIEDAVNRQKDE- 623
Query: 409 IGKVS 413
+G+++
Sbjct: 624 VGEIT 628
>F2PRD9_TRIEC (tr|F2PRD9) DNA-directed RNA polymerase OS=Trichophyton equinum
(strain ATCC MYA-4606 / CBS 127.97) GN=TEQG_03656 PE=3
SV=1
Length = 1712
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 94/345 (27%), Positives = 167/345 (48%), Gaps = 36/345 (10%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDE 140
+++ + K FS+R+VITGD ++EVG+P+ IAQ +T+ E V +N+ L +LVD
Sbjct: 351 RLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPISIAQTLTYPEVVTPYNIHRLGQLVDN 410
Query: 141 --NLCLAYKEGVSTYSLR------EGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKH 192
++ + + + R +G G +L+ G V R +MDGD + NR P+ HK
Sbjct: 411 GPDVHPGARHVIRSSGERIDLRHHKGGGGRNFLQWGWKVERHLMDGDFILFNRQPSLHKE 470
Query: 193 SLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLS 252
S+ + V + T ++N + P ADFDGD ++L PQS A+AE+ +L V ++S
Sbjct: 471 SMMSHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEEARAELNQLCLVPLNIVS 530
Query: 253 SHSGNLNLQLSTDSLLSLKMLVKKG-FMDRAAANQLAMFLSLP-----LPRPALLKAGSG 306
+ + D+L + + ++ F+ + + + L +P LP+PA+LK
Sbjct: 531 PQRNGPLMGIVQDTLCGIYKICRRDVFLTKEQV--MNVLLWVPDWDGVLPQPAILKP--- 585
Query: 307 DSYWTSIQILQCALPLSFD-----------------CTGGRYLIRQSDILEFDLSRDVLP 349
W+ Q++ LP + G L+ +++ S+ +
Sbjct: 586 RPRWSGKQMISMVLPSGLNLLRIDKDKSPISEKFSPLADGGVLVHGGELMYGMFSKKTVG 645
Query: 350 AVINEIAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
A + ++F GP A++FF+ Q V+ + NGFS+G+ D
Sbjct: 646 ASGGGVVHTIFNEYGPDAAMSFFNGAQAVVNYWLLHNGFSIGIGD 690
>C5FCL2_ARTOC (tr|C5FCL2) DNA-directed RNA polymerase OS=Arthroderma otae (strain
ATCC MYA-4605 / CBS 113480) GN=MCYG_00434 PE=3 SV=1
Length = 1748
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 95/345 (27%), Positives = 166/345 (48%), Gaps = 36/345 (10%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDE 140
+++ + K FS+R+VITGD ++EVG+P+ IAQ +T+ E V +N+ L +LVD
Sbjct: 351 RLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPISIAQTLTYPEVVTPYNIHRLGQLVDN 410
Query: 141 NLCL------AYKEGVSTYSLR--EGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKH 192
+ + LR +G G +L+ G V R +MDGD + NR P+ HK
Sbjct: 411 GPDVHPGARYVIRSSGERIDLRHHKGGGGRNFLQWGWKVERHLMDGDFILFNRQPSLHKE 470
Query: 193 SLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLS 252
S+ + V + T ++N + P ADFDGD ++L PQS A+AE+ +L V ++S
Sbjct: 471 SMMSHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEEARAELNQLCLVPLNIVS 530
Query: 253 SHSGNLNLQLSTDSLLSLKMLVKKG-FMDRAAANQLAMFLSLP-----LPRPALLKAGSG 306
+ + D+L + + ++ F+ + + + L +P LP+PA+LK
Sbjct: 531 PQRNGPLMGIVQDTLCGIYKICRRDVFLTKEQV--MNILLWVPDWDGVLPQPAILKP--- 585
Query: 307 DSYWTSIQILQCALPLSFD-----------------CTGGRYLIRQSDILEFDLSRDVLP 349
W+ Q++ LP + G L+ +++ S+ +
Sbjct: 586 RPRWSGKQMISMVLPPGLNLLRIDKDKSPISEKFSPLADGGVLVHGGELMYGMFSKKTVG 645
Query: 350 AVINEIAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
A + ++F GP+ A++FF+ Q V+ + NGFS+G+ D
Sbjct: 646 ASGGGVVHTIFNEYGPEVAMSFFNGAQTVVNYWLLHNGFSIGIGD 690
>A7J591_9LECA (tr|A7J591) DNA-directed RNA polymerase (Fragment) OS=Anaptychia
palmatula GN=RPB1 PE=3 SV=1
Length = 1020
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 95/336 (28%), Positives = 169/336 (50%), Gaps = 27/336 (8%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLV-- 138
+++ + K FS+R+VITGD ++EVG+P IA+ +T+ E V +N+ L +L+
Sbjct: 275 RVRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLIKN 334
Query: 139 --DENLCLAY--KEGVSTYSLREGSK-GHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHS 193
+E+ Y ++ LR + G L+ G V R I+DGD + NR P+ HK S
Sbjct: 335 GPNEHPGARYVIRDNGERIDLRYHRRAGDLVLQYGWKVERHIVDGDFIIFNRQPSLHKES 394
Query: 194 LQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSS 253
+ V + T ++N + P ADFDGD ++L PQS +AEV +L V ++S
Sbjct: 395 MMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVNQLCMVPLNIVSP 454
Query: 254 HSGNLNLQLSTDSLLSLKMLVKKG-FMDRAAANQLAMFLSLP-----LPRPALLKAGSGD 307
+ + + D+L + + ++ F+++ + + L +P +P+PA+LK
Sbjct: 455 QRNSPLMGIVQDTLCGIYKICRRDVFLNQGQV--MNILLWVPDWDGIIPQPAILKP---T 509
Query: 308 SYWTSIQILQCALPLSFDCTGGR---------YLIRQSDILEFDLSRDVLPAVINEIAAS 358
WT QI+ +P + + LI +++ L++ ++ A + +
Sbjct: 510 PVWTGKQIVSLIIPAGLNLVRDKNHNPLDDKGALISGGELMYGLLTKRIVGAQMAGVIHI 569
Query: 359 VFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
V+ KGP+ A+NFF+ Q V+ + NGFS+G+ D
Sbjct: 570 VYNEKGPEAAMNFFNGAQAVVNYWLLHNGFSIGIGD 605
>K8ECL4_9CHLO (tr|K8ECL4) DNA-directed RNA polymerase OS=Bathycoccus prasinos
GN=Bathy03g01930 PE=3 SV=1
Length = 1499
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 105/354 (29%), Positives = 166/354 (46%), Gaps = 49/354 (13%)
Query: 93 FSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLV--------DENLCL 144
F++R+VI+ D RI+EVG+P IA ++T+ E VN +N+ L++L+ N
Sbjct: 384 FTARTVISPDPNLRIDEVGLPQHIAMQLTYPETVNNNNIAELRQLIINGEGKWPGANFVK 443
Query: 145 AYKEG-VSTYSLREGSKGHTY--LKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALVVYI 201
+ + G S L+ G + LKPG IV R + DGDIV NR P+ HK S+ A +
Sbjct: 444 SKQSGHFSAQYLKYGDRNRVAKKLKPGDIVERHVRDGDIVLFNRQPSLHKMSIMAHRAKV 503
Query: 202 HDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHSGNLNLQ 261
T++ N +C P ADFDGD +++ PQ+ A+AE + L V + L + +G + +
Sbjct: 504 MPWRTLRFNECVCAPYNADFDGDEMNIHLPQTEEARAEAISLMGVTQNLCTPKNGEILIA 563
Query: 262 LSTDSLLSLKMLV-KKGFMDRAAANQLAMFL-----SLPLPRPALLKAGSGDSYWTSIQI 315
+ D L + +L K+ F DR+ QLA ++ S+ LP PA++K WT QI
Sbjct: 564 ATQDFLTASFLLTSKEVFFDRSQFGQLAAYMSDALESIDLPSPAIVKP---IEMWTGKQI 620
Query: 316 LQCAL-PLSFD--------------------CTGGRYL-IRQSDILEFDLSRDVLPAVIN 353
+ P D C+ Y+ I+ S+I+ L + L
Sbjct: 621 FSVLIRPRMRDQIFVNLEVSEKAYTKVNQQMCSNDGYVCIQNSEIISGQLGKATLGGGNK 680
Query: 354 EIAASVFF----GKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDFSISGAVKR 403
+F+ G A N + L + I GFS+G+ D S ++R
Sbjct: 681 ---TGLFYVLNSDYGADVAANAMNRLAKLAARWIGIRGFSIGIDDVKPSPELER 731
>D4AV18_ARTBC (tr|D4AV18) DNA-directed RNA polymerase OS=Arthroderma benhamiae
(strain ATCC MYA-4681 / CBS 112371) GN=ARB_00027 PE=3
SV=1
Length = 1635
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 95/345 (27%), Positives = 165/345 (47%), Gaps = 36/345 (10%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDE 140
+++ + K FS+R+VITGD ++EVG+P+ IAQ +T+ E V +N+ L +LVD
Sbjct: 242 RLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPISIAQTLTYPEVVTPYNIHRLGQLVDN 301
Query: 141 NLCL------AYKEGVSTYSLR--EGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKH 192
+ + LR +G G +L+ G V R +MDGD + NR P+ HK
Sbjct: 302 GPDVHPGARYVIRSSGERIDLRHHKGGGGRNFLQWGWKVERHLMDGDFILFNRQPSLHKE 361
Query: 193 SLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLS 252
S+ + V + T ++N + P ADFDGD ++L PQS A+AE+ +L V ++S
Sbjct: 362 SMMSHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEEARAELNQLCLVPLNIVS 421
Query: 253 SHSGNLNLQLSTDSLLSLKMLVKKG-FMDRAAANQLAMFLSLP-----LPRPALLKAGSG 306
+ + D+L + + ++ F+ + + + L +P LP+PA+LK
Sbjct: 422 PQRNGPLMGIVQDTLCGIYKICRRDVFLTKEQV--MNVLLWVPDWDGVLPQPAILKP--- 476
Query: 307 DSYWTSIQILQCALPLSFD-----------------CTGGRYLIRQSDILEFDLSRDVLP 349
W+ Q++ LP + G L+ +++ S+ +
Sbjct: 477 RPRWSGKQMISMVLPSGLNLLRIDKDKSPISEKFSPLADGGVLVHGGELMYGMFSKKTVG 536
Query: 350 AVINEIAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
A + ++F GP A++FF+ Q V+ + NGFS+G+ D
Sbjct: 537 ASGGGVVHTIFNEYGPDAAMSFFNGAQAVVNYWLLHNGFSIGIGD 581
>D4D6M6_TRIVH (tr|D4D6M6) DNA-directed RNA polymerase OS=Trichophyton verrucosum
(strain HKI 0517) GN=TRV_02753 PE=3 SV=1
Length = 1744
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 95/345 (27%), Positives = 165/345 (47%), Gaps = 36/345 (10%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDE 140
+++ + K FS+R+VITGD ++EVG+P+ IAQ +T+ E V +N+ L +LVD
Sbjct: 351 RLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPISIAQTLTYPEVVTPYNIHRLGQLVDN 410
Query: 141 NLCL------AYKEGVSTYSLR--EGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKH 192
+ + LR +G G +L+ G V R +MDGD + NR P+ HK
Sbjct: 411 GPDVHPGARYVIRSSGERIDLRHHKGGGGRNFLQWGWKVERHLMDGDFILFNRQPSLHKE 470
Query: 193 SLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLS 252
S+ + V + T ++N + P ADFDGD ++L PQS A+AE+ +L V ++S
Sbjct: 471 SMMSHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEEARAELNQLCLVPLNIVS 530
Query: 253 SHSGNLNLQLSTDSLLSLKMLVKKG-FMDRAAANQLAMFLSLP-----LPRPALLKAGSG 306
+ + D+L + + ++ F+ + + + L +P LP+PA+LK
Sbjct: 531 PQRNGPLMGIVQDTLCGIYKICRRDVFLTKEQV--MNVLLWVPDWDGVLPQPAILKP--- 585
Query: 307 DSYWTSIQILQCALPLSFD-----------------CTGGRYLIRQSDILEFDLSRDVLP 349
W+ Q++ LP + G L+ +++ S+ +
Sbjct: 586 RPRWSGKQMISMVLPSGLNLLRIDKDKSPISEKFSPLADGGVLVHGGELMYGMFSKKTVG 645
Query: 350 AVINEIAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
A + ++F GP A++FF+ Q V+ + NGFS+G+ D
Sbjct: 646 ASGGGVVHTIFNEYGPDAAMSFFNGAQAVVNYWLLHNGFSIGIGD 690
>A5H2F1_9LECA (tr|A5H2F1) DNA-directed RNA polymerase (Fragment) OS=Tornabea
scutellifera GN=RPB1 PE=3 SV=1
Length = 993
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 95/339 (28%), Positives = 165/339 (48%), Gaps = 33/339 (9%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDE 140
+++ + K FS+R+VITGD ++EVG+P IA+ +T+ E V +N+ L +LV
Sbjct: 250 RVRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIHKLHQLVKN 309
Query: 141 NLCLAYKEGVSTYSLREGSK----------GHTYLKPGQIVHRRIMDGDIVFINRPPTTH 190
+ + Y +R+G + G L+ G V R I+DGD + NR P+ H
Sbjct: 310 G---PNEHPGARYVIRDGGERIDLRFHRRAGDLVLQYGWKVERHIVDGDFIIFNRQPSLH 366
Query: 191 KHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQL 250
K S+ V + T ++N + P ADFDGD ++L PQS +AEV +L V +
Sbjct: 367 KESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVNQLCMVPLNI 426
Query: 251 LSSHSGNLNLQLSTDSLLSLKMLVKKG-FMDRAAANQLAMFLSLP-----LPRPALLKAG 304
+S + + + D+L + + ++ F++ + + L +P +P+PA+LK
Sbjct: 427 VSPQRNSPLMGIVQDTLCGIYKICRRDVFLNHEQV--MNILLWVPEWDGIIPQPAVLKP- 483
Query: 305 SGDSYWTSIQILQCALPLSFDCTGGR---------YLIRQSDILEFDLSRDVLPAVINEI 355
WT QI+ +P + G + +++ L++ V+ A + I
Sbjct: 484 --KPLWTGKQIVSLVIPSGLNLVKGSDYAPLKDEGIFVAGGELMFGLLNKKVVGAAMGGI 541
Query: 356 AASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
V+ KG + A+NFF+ Q V+ + NGFS+G+ D
Sbjct: 542 IHIVYNEKGSEAAMNFFNGAQAVVNYWLLHNGFSIGIGD 580
>A1YIB6_9FUNG (tr|A1YIB6) DNA-directed RNA polymerase (Fragment) OS=Basidiobolus
ranarum GN=RPB1 PE=3 SV=1
Length = 1018
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 101/349 (28%), Positives = 167/349 (47%), Gaps = 35/349 (10%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLV-- 138
+++ + K FS+R+VITGD I+EVG+P IA+ +TF E V +N+ +Q+LV
Sbjct: 268 RLRGNLMGKRVDFSARTVITGDPNLSIDEVGVPRSIARNLTFPEMVTPYNIERMQELVRN 327
Query: 139 --DENLCLAY--KEGVSTYSLREGSK-GHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHS 193
+E+ Y ++ LR + G L+ G V R + DGD+V NR P+ HK S
Sbjct: 328 GPNEHPGAKYVIRDTGERIDLRYHKRAGDIPLQYGYKVERHLNDGDVVIFNRQPSLHKMS 387
Query: 194 LQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSS 253
+ V + T ++N + P ADFDGD +++ PQS AE+ E+ V KQ++S
Sbjct: 388 MMGHKVRVMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSEETNAEIKEICMVPKQIISP 447
Query: 254 HSGNLNLQLSTDSLLSLKMLVKK-GFMDRAAANQLAMFLS---LPLPRPALLKAGSGDSY 309
S + + D+L ++ K+ F+D+A + M+++ +P PA+LK
Sbjct: 448 QSNKPVMGIVQDTLCGIRKFTKRDSFVDKALVMNILMWVADWDGVIPTPAILKP---QPL 504
Query: 310 WTSIQILQCALPLSFDCTGGRYLIRQSDILEFDLSRDVLPAVI--NEIAASVFFGK---- 363
WT Q++ +P + +C Y D + D+S V+ E+ + + K
Sbjct: 505 WTGKQLVTMIVPKNINCI--TYHSAHPDDEKSDISPGDTKVVVENGELISGIVCKKTVGA 562
Query: 364 -------------GPQEALNFFDVLQPVLMESIFSNGFSVGLHDFSISG 399
GP+ A FF Q V+ + +GFS+G+ D G
Sbjct: 563 SNGGWVHVAMNEHGPEVAKRFFSGAQAVVNYWLLQHGFSIGIGDTIADG 611
>Q2PYQ1_9FUNG (tr|Q2PYQ1) DNA-directed RNA polymerase (Fragment) OS=Olpidium
brassicae GN=RPB1 PE=3 SV=1
Length = 585
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 95/343 (27%), Positives = 170/343 (49%), Gaps = 32/343 (9%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLV-- 138
+++ + K FS+R+VITGD I+EVG+P IA+ +TF E V +N+ +Q+LV
Sbjct: 100 RLRGNLMGKRVDFSARTVITGDPNLSIDEVGVPRSIARNLTFPEIVTPYNIDRMQELVRN 159
Query: 139 --DENLCLAY--KEGVSTYSLREGSK-GHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHS 193
+E+ + ++ LR + G L+ G V R ++DGD++ NR P+ HK S
Sbjct: 160 GPNEHPGAKFVIRDTGERIDLRYHKRSGDIPLQVGWKVERHLVDGDVIIFNRQPSLHKMS 219
Query: 194 LQALVVYIHDDHTVKINPLIC-GPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLS 252
+ V + T ++N + P ADFDGD +++ PQS+ A+AE+ E+ V KQ+++
Sbjct: 220 MMGHKVRVMPYSTFRLNLSVSPSPYNADFDGDEMNMHVPQSIEARAEINEICMVPKQIVA 279
Query: 253 SHSGNLNLQLSTDSLLSLKMLVKKG-FMDRAAANQLAMFL---SLPLPRPALLKAGSGDS 308
+ + + D+L ++ + K+ F+D+A + M++ LP PA+ K
Sbjct: 280 PAANKPCMGIVQDTLCGVRKMTKRDVFLDKAFVMNVVMWIPNWDGNLPVPAIFKP---KP 336
Query: 309 YWTSIQILQCALPLSF---------------DCTGG--RYLIRQSDILEFDLSRDVLPAV 351
WT QI +P D + G + +I D+L + + + A
Sbjct: 337 LWTGKQIFSLTIPKGINLQAFHSTHPDNEHTDISPGDTKVIIENGDVLAGIICKKTVGAS 396
Query: 352 INEIAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
+ ++ KGP+ FF+ +Q ++ + +GFS+G+ D
Sbjct: 397 PGGLIHVIWQEKGPEVCKAFFNGVQAIVNNWLLQHGFSIGIGD 439
>R7Z6D3_9EURO (tr|R7Z6D3) DNA-directed RNA polymerase II subunit A
OS=Coniosporium apollinis CBS 100218 GN=W97_08913 PE=4
SV=1
Length = 1520
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 99/334 (29%), Positives = 160/334 (47%), Gaps = 23/334 (6%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLV-- 138
+++ + K FS+R+VITGD ++EVG+P IA+ +T+ E V +N+ L +LV
Sbjct: 120 RLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIGKLHQLVRN 179
Query: 139 --DENLCLAY--KEGVSTYSLREGSK-GHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHS 193
+E+ Y +E LR + G L+ G V R I+DGD + NR P+ HK S
Sbjct: 180 GPNEHPGAKYVIRENGERIDLRHHKRAGEITLQYGWKVERHIVDGDFIIFNRQPSLHKES 239
Query: 194 LQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSS 253
+ V + T ++N + P ADFDGD ++L PQS +AEV EL V ++S
Sbjct: 240 MMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVKELCMVPLNIVSP 299
Query: 254 HSGNLNLQLSTDSLLSLKMLVKKG-FMDRAAANQLAMFL---SLPLPRPALLKAGSGDSY 309
+ + D+L + L ++ F+ + + M++ +P+PA+ K
Sbjct: 300 QRNGPLMGIVQDTLCGIYKLCRRDVFLTKDQVMNILMWVPDWDGTIPQPAIFKP---RPR 356
Query: 310 WTSIQILQCALPLSFDCTGG---------RYLIRQSDILEFDLSRDVLPAVINEIAASVF 360
WT QI LP + G LI +++ S+ + A I +F
Sbjct: 357 WTGKQIASLVLPDGLNLVRGGDKCPLNDDTLLIHGGELMYGLFSKPTIGASGGGIIHVIF 416
Query: 361 FGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
KG + A+NFF+ Q V+ + NGFS+G+ D
Sbjct: 417 NEKGWEAAVNFFNGTQRVVNYWLLHNGFSIGIGD 450
>A7J5B2_9LECA (tr|A7J5B2) DNA-directed RNA polymerase (Fragment) OS=Gyalideopsis
vulgaris GN=RPB1 PE=3 SV=1
Length = 1015
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 104/358 (29%), Positives = 169/358 (47%), Gaps = 37/358 (10%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLV-- 138
+++ + K FS+R+VITGD ++EVG+P IA+ +T+ E V +N+ L +LV
Sbjct: 269 RLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIHKLHQLVRN 328
Query: 139 --DENLCLAY--KEGVSTYSLREGSK-GHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHS 193
+E+ Y ++ LR + G L G V R I+DGD + NR P+ HK S
Sbjct: 329 GPNEHPGAKYVIRDSGERIDLRHHKRAGDINLAYGWKVERHIVDGDFIIFNRQPSLHKES 388
Query: 194 LQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSS 253
+ V + T ++N + P ADFDGD ++L PQS +AEV +L V ++S
Sbjct: 389 MMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVNQLCMVPLNIVSP 448
Query: 254 HSGNLNLQLSTDSLLSL-KMLVKKGFMDRAAANQLAMFLSLP-----LPRPALLKAGSGD 307
+ + D+L + KM + F+ + + + L +P +P+PA+ K
Sbjct: 449 QRNGPLMGIVQDTLCGIYKMCRRDVFLTKERV--MNILLWVPDWDGVIPQPAIFKP---K 503
Query: 308 SYWTSIQILQCALPLSFDCTGGR-----------YLIRQSDILEFDLSRDVLPAVINEIA 356
WT QIL +P + G LI +++ L++ + A +
Sbjct: 504 PLWTGKQILGLVIPPGLNLLRGSEEGFFPLNDDGLLIAGGELMYGLLNKKSVGASGGGVI 563
Query: 357 ASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDF--------SISGAVKRVTD 406
+F KGP+ A+NFF+ Q V+ + NGFS+G+ D I GAV + D
Sbjct: 564 HIIFNEKGPEVAMNFFNGAQTVVNYWLLHNGFSIGIGDTIPDRNTIRQIEGAVNKQKD 621
>F0ZE84_DICPU (tr|F0ZE84) DNA-directed RNA polymerase OS=Dictyostelium purpureum
GN=DICPUDRAFT_149604 PE=3 SV=1
Length = 1755
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 99/341 (29%), Positives = 167/341 (48%), Gaps = 30/341 (8%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLV-- 138
+++ + K FS+R+VIT D I++VG+P IA +T+ E V N+ +++L+
Sbjct: 341 RIRGNLMGKRVDFSARTVITADPNLSIDQVGVPRSIALNLTYPETVTPFNIDKMRELIRN 400
Query: 139 --DENLCLAY--KEGVSTYSLREGSK-GHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHS 193
+E+ Y +E + + LR K T+L+ G V R I DGD+V NR P+ HK S
Sbjct: 401 GPNEHPGAKYIIREDGTRFDLRFVKKVSDTHLECGYKVERHINDGDVVIFNRQPSLHKMS 460
Query: 194 LQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSS 253
+ + + T ++N + P ADFDGD ++L PQ+L +AEV+E+ V +Q++S
Sbjct: 461 MMGHRIKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTLETRAEVIEIMMVPRQIVSP 520
Query: 254 HSGNLNLQLSTDSLLSLKMLVKKG-FMDRAAANQLAMFLSL---PLPRPALLKAGSGDSY 309
S + + D+LL ++ K+ F++R + M+L +P PA+LK
Sbjct: 521 QSNRPVMGIVQDTLLGSRLFTKRDTFIERDLVMNILMWLPSWDGKVPPPAILKP---KQL 577
Query: 310 WTSIQILQCALP----LSF----------DCTGG--RYLIRQSDILEFDLSRDVLPAVIN 353
WT Q+ +P + F +C+ G R +I + ++L L + L A
Sbjct: 578 WTGKQLFSLIIPDINLIRFTSTHNDKEPNECSAGDTRVIIERGELLAGILCKRSLGAANG 637
Query: 354 EIAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
I V G F D Q V+ + + GF++G+ D
Sbjct: 638 SIIHVVMNEHGHDTCRLFIDQTQTVVNHWLINRGFTMGIGD 678
>Q2PYR7_SMICU (tr|Q2PYR7) DNA-directed RNA polymerase (Fragment) OS=Smittium
culisetae GN=RPB1 PE=3 SV=1
Length = 983
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 103/389 (26%), Positives = 178/389 (45%), Gaps = 50/389 (12%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDE 140
+++ + K FS+R+VI+GD I++VG+P IA+ +T+ E V +N+ LQ+LV
Sbjct: 256 RLRGNLMGKRVDFSARTVISGDPNLEIDQVGVPKAIAKNLTYPEVVTPYNIDRLQELVQN 315
Query: 141 NLCLAYKEGVSTYSLREGSK----------GHTYLKPGQIVHRRIMDGDIVFINRPPTTH 190
+ + Y +R+ + G L+ G V R +MD D+V NR P+ H
Sbjct: 316 G---PTEHPGAKYVIRDSGERIDLKYSKRGGDIPLQIGYKVERSLMDNDVVIFNRQPSLH 372
Query: 191 KHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQL 250
K S+ V + D T ++N + P ADFDGD ++L PQS +AEV EL V KQ+
Sbjct: 373 KMSMMGHRVKVMDYSTFRLNLSVTSPYNADFDGDEMNLHLPQSEETRAEVRELCMVPKQI 432
Query: 251 LSSHSGNLNLQLSTDSLLSLKMLVKKGFMDRAAANQLAM--FLSLP-----LPRPALLKA 303
+S + + D+L ++ M K+ D L M L +P +P P +LK
Sbjct: 433 VSPQGNRPIMGIVQDTLCAMIMFTKR---DNLMKQDLVMDLLLKVPGWDGMIPPPCILKP 489
Query: 304 GSGDSYWTSIQILQCALPLSFDC-----------------TGGRYLIRQSDILEFDLSRD 346
W+ Q+ +P +C R ++ +L + +
Sbjct: 490 ---QPLWSGKQLYSLLIPDGINCYTFLKEHPDLETSWSSPGDTRVVVENGVLLSGIVCKQ 546
Query: 347 VLPAVINEIAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDFSISGAVKRVTD 406
+ AV + ++F GP+ F Q V+ + + +NGFS+G+ D +I+ A
Sbjct: 547 TVGAVRGGLVHTIFNELGPEATKVFLGGTQRVINQWLVTNGFSIGIGD-TITDA------ 599
Query: 407 RNIGKVSPLLYQLRFIYNELVAQQLEKHM 435
+ VS ++ + I ++++ +E M
Sbjct: 600 STMDSVSKIISEAHRIVDQIIKDCIEDKM 628
>A5H283_9LECA (tr|A5H283) DNA-directed RNA polymerase (Fragment) OS=Platismatia
glauca GN=RPB1 PE=3 SV=1
Length = 996
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 97/338 (28%), Positives = 165/338 (48%), Gaps = 29/338 (8%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLV-- 138
+++ + K FS+R+VITGD ++EVG+P IA+ +T+ E V +N+ L +LV
Sbjct: 264 RLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKN 323
Query: 139 --DENLCLAY--KEGVSTYSLREGSK-GHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHS 193
+E+ Y ++ LR + G L+ G V R ++DGD + NR P HK S
Sbjct: 324 GPNEHPGAKYVIRDTGERIDLRHHKRAGEISLQYGWKVERHVVDGDYIXFNRQPXXHKES 383
Query: 194 LQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSS 253
+ V + T ++N + P ADFDGD ++L PQS +AE+ +L V ++S
Sbjct: 384 MMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCMVPLNIVSP 443
Query: 254 HSGNLNLQLSTDSLLSL-KMLVKKGFMDRAAANQLAMFLSLP-----LPRPALLKAGSGD 307
+ + D+L + KM + F+ + + + L +P +P+PA++K
Sbjct: 444 QRNGPLMGIVQDTLCGIYKMCRRDVFLTKKQV--MNILLWVPDWDGVIPQPAIVKPL--- 498
Query: 308 SYWTSIQILQCALPLSFDCTGGR-----------YLIRQSDILEFDLSRDVLPAVINEIA 356
+ WT QIL +P + G LI +++ L++ + A +
Sbjct: 499 AMWTGKQILSLVIPTGLNLLRGSEEGLSPVNDDGLLISGGELMYGLLNKKSVGASGGGVI 558
Query: 357 ASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
+F KGP+ A+NFF+ Q V+ + NGFS+G+ D
Sbjct: 559 HIIFNEKGPEAAMNFFNGAQTVVNYWLLHNGFSIGIGD 596
>A1YIB2_SMICU (tr|A1YIB2) DNA-directed RNA polymerase (Fragment) OS=Smittium
culisetae GN=RPB1 PE=3 SV=1
Length = 1025
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 103/389 (26%), Positives = 178/389 (45%), Gaps = 50/389 (12%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDE 140
+++ + K FS+R+VI+GD I++VG+P IA+ +T+ E V +N+ LQ+LV
Sbjct: 275 RLRGNLMGKRVDFSARTVISGDPNLEIDQVGVPKAIAKNLTYPEVVTPYNIDRLQELVQN 334
Query: 141 NLCLAYKEGVSTYSLREGSK----------GHTYLKPGQIVHRRIMDGDIVFINRPPTTH 190
+ + Y +R+ + G L+ G V R +MD D+V NR P+ H
Sbjct: 335 G---PTEHPGAKYVIRDSGERIDLKYSKRGGDIPLQIGYKVERSLMDNDVVIFNRQPSLH 391
Query: 191 KHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQL 250
K S+ V + D T ++N + P ADFDGD ++L PQS +AEV EL V KQ+
Sbjct: 392 KMSMMGHRVKVMDYSTFRLNLSVTSPYNADFDGDEMNLHLPQSEETRAEVRELCMVPKQI 451
Query: 251 LSSHSGNLNLQLSTDSLLSLKMLVKKGFMDRAAANQLAM--FLSLP-----LPRPALLKA 303
+S + + D+L ++ M K+ D L M L +P +P P +LK
Sbjct: 452 VSPQGNRPIMGIVQDTLCAMIMFTKR---DNLMKQDLVMDLLLKVPGWDGMIPPPCILKP 508
Query: 304 GSGDSYWTSIQILQCALPLSFDC-----------------TGGRYLIRQSDILEFDLSRD 346
W+ Q+ +P +C R ++ +L + +
Sbjct: 509 ---QPLWSGKQLYSLLIPDGINCYTFLKEHPDLETSWSSPGDTRVVVENGVLLSGIVCKQ 565
Query: 347 VLPAVINEIAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDFSISGAVKRVTD 406
+ AV + ++F GP+ F Q V+ + + +NGFS+G+ D +I+ A
Sbjct: 566 TVGAVRGGLVHTIFNELGPEATKVFLGGTQRVINQWLVTNGFSIGIGD-TITDA------ 618
Query: 407 RNIGKVSPLLYQLRFIYNELVAQQLEKHM 435
+ VS ++ + I ++++ +E M
Sbjct: 619 STMDSVSKIISEAHRIVDQIIKDCIEDKM 647
>Q2PYS1_9FUNG (tr|Q2PYS1) DNA-directed RNA polymerase (Fragment) OS=Basidiobolus
ranarum GN=RPB1 PE=3 SV=1
Length = 1015
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 101/349 (28%), Positives = 168/349 (48%), Gaps = 35/349 (10%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLV-- 138
+++ + K FS+R+VITGD I+EVG+P IA+ +TF E V +N+ +Q+LV
Sbjct: 270 RLRGNLMGKRVDFSARTVITGDPNLSIDEVGVPRSIARNLTFPEMVTPYNIERMQELVRN 329
Query: 139 --DENLCLAY--KEGVSTYSLREGSK-GHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHS 193
+E+ Y ++ LR + G L+ G V R + +GD+V NR P+ HK S
Sbjct: 330 GPNEHPGAKYVIRDTGERIDLRYHKRAGDIPLQYGYKVERHLNNGDVVIFNRQPSLHKMS 389
Query: 194 LQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSS 253
+ V + T ++N + P ADFDGD +++ PQS KAE+ E+ V KQ++S
Sbjct: 390 MMGHKVRVMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSEETKAEIKEICMVPKQIISP 449
Query: 254 HSGNLNLQLSTDSLLSLKMLVKKG-FMDRAAANQLAMFLS---LPLPRPALLKAGSGDSY 309
S + + D+L ++ K+ F+D+A + M+++ +P PA+LK
Sbjct: 450 QSNKPVMGIVQDTLCGIRKFTKRDCFVDKALVMNILMWVADWDGVIPTPAILKP---QPL 506
Query: 310 WTSIQILQCALPLSFDCTGGRYLIRQSDILEFDLSRDVLPAVI--NEIAASVFFGK---- 363
WT Q++ +P + +C Y D + D+S V+ E+ + + K
Sbjct: 507 WTGKQLVTMIVPKNINCI--TYHSAHPDDEKSDISPGDTKVVVENGELLSGIVCKKTVGA 564
Query: 364 -------------GPQEALNFFDVLQPVLMESIFSNGFSVGLHDFSISG 399
GP+ A FF Q V+ + +GFS+G+ D G
Sbjct: 565 SNGGWVHVAMNEHGPEVAKKFFSGAQAVVNYWLLQHGFSIGIGDTIADG 613
>A0AAR2_9GLOM (tr|A0AAR2) DNA-directed RNA polymerase (Fragment) OS=Geosiphon
pyriformis GN=RPB1 PE=3 SV=1
Length = 649
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 92/345 (26%), Positives = 160/345 (46%), Gaps = 37/345 (10%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDE 140
+++ + K FS+R+VITGD ++EVG+P IA+ +T+ E V +N+ LQ+LV
Sbjct: 106 RLRGNLMGKRVDFSARTVITGDPNISVDEVGVPRSIARNLTYPELVTPYNIEHLQELVRN 165
Query: 141 NLCLAYKEGVSTYSLREGSK----------GHTYLKPGQIVHRRIMDGDIVFINRPPTTH 190
+ + Y +R+ + G L+ G V R + DGD+V NR P+ H
Sbjct: 166 G---PTEHPGAKYVIRDTGERIDLKHHKRAGEVRLQYGWKVERHLNDGDVVIFNRQPSLH 222
Query: 191 KHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQL 250
K S+ V + T ++N + P ADFDGD +++ PQS+ +AE+ E+ V KQ+
Sbjct: 223 KMSMMGHKVRVMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSVETRAEITEICMVPKQI 282
Query: 251 LSSHSGNLNLQLSTDSLLSLKMLVKKG-FMDRAAANQLAMFL---SLPLPRPALLKAGSG 306
+S S + + D+L +++ K+ F+ R + M++ +PRP ++K
Sbjct: 283 VSPQSNKPVMGIVQDTLCAVRKFTKRDCFLSRDLVMNILMWVPEWDGRIPRPCIIKP--- 339
Query: 307 DSYWTSIQILQCALPLSFDCTG-----------------GRYLIRQSDILEFDLSRDVLP 349
WT QIL +P +C G + LI +L + + +
Sbjct: 340 IPMWTGKQILSLIIPKGINCDGFHSGHPENEKSDISPGDTKVLIEDGQVLCGIICKKTVG 399
Query: 350 AVINEIAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
+ + G + A F + Q V+ + +GFS+G+ D
Sbjct: 400 TSQQGLVHVIMQELGSEAAKKFLNGCQTVVNNWLLQHGFSIGIGD 444
>B7PVV6_IXOSC (tr|B7PVV6) DNA-directed RNA polymerase OS=Ixodes scapularis
GN=IscW_ISCW008476 PE=3 SV=1
Length = 1394
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 101/345 (29%), Positives = 158/345 (45%), Gaps = 45/345 (13%)
Query: 93 FSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDE--------NLCL 144
FS R+VI+ D RI++VG+P+ +A+ +T+ ERV HN+ ++ LV N
Sbjct: 363 FSGRTVISPDPNLRIDQVGVPVHVAKILTYPERVTQHNLALMRTLVRNGPDVHPGANFLE 422
Query: 145 AYKEGVSTYSLREGSKG--HTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALVVYIH 202
+ G Y LR G++ L+PG +V R + DGD+V NR P+ HK S+ A + +
Sbjct: 423 SRDSGFKRY-LRYGNRDLLAQQLRPGDVVERHLRDGDVVLFNRQPSLHKLSIMAHLAKVL 481
Query: 203 DDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHSGNLNLQL 262
T + N +C P ADFDGD ++L PQ+ A+AE + L L++ +G +
Sbjct: 482 PHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEARAEALVLMGTRANLVTPRNGEPLIAA 541
Query: 263 STDSLLSLKMLVKKG-FMDRAAANQLAMFL--------SLPLPRPALLKAGSGDSYWTSI 313
D + +L ++ F DRA A QLA ++ S+ LP PA+ K WT
Sbjct: 542 IQDFITGGYLLTQRDVFFDRAKAAQLAAYMLAGKDVSISVELPPPAIRKP---VCLWTGK 598
Query: 314 QIL--------QCALPLSFDCTGGRY-------------LIRQSDILEFDLSRDVL-PAV 351
QI C + S G Y LIR S++L + + +
Sbjct: 599 QIFSLIIRPSRSCPVLASLRAKGKSYTSGEEMCANDAYVLIRNSELLSGTMDKGTMGSGS 658
Query: 352 INEIAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDFS 396
N I + G Q A + L + + + GFS+G+ D +
Sbjct: 659 KNNIFYILLRDYGDQYAADAMWRLARIASFYMQNRGFSIGIGDVT 703
>G4T8R1_PIRID (tr|G4T8R1) DNA-directed RNA polymerase OS=Piriformospora indica
(strain DSM 11827) GN=PIIN_01555 PE=3 SV=1
Length = 1796
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 96/338 (28%), Positives = 162/338 (47%), Gaps = 29/338 (8%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLV-- 138
+++ + K FS+R+VITGD ++++VG+P IA +T+ ERV +N+ +L +LV
Sbjct: 348 RLRGNLMGKRVDFSARTVITGDPNLQLDQVGVPRSIAMTLTYPERVTRYNIQYLTELVRR 407
Query: 139 --DENLCLAY--KEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSL 194
E Y ++ L+ + + L+ G IV R + DGD V NR P+ HK S+
Sbjct: 408 GPQEYPGARYVIRDTGERIDLKYNKRSDSLLQFGWIVERHLKDGDYVLFNRQPSLHKMSM 467
Query: 195 QALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSH 254
+ V I T ++N + P ADFDGD ++L PQS +AE+ ++ V +Q++S
Sbjct: 468 MSHRVKIMPYSTFRLNLSVTPPYNADFDGDEMNLHVPQSEETRAELSQIAWVPRQIVSPQ 527
Query: 255 SGNLNLQLSTDSLLSL-KMLVKKGFMDRAAANQLAMFLSLP-----LPRPALLKAGSGDS 308
+ + + D+L + K ++ F+D L L LP +P P +LK
Sbjct: 528 ANKPVMGIVQDTLCGIRKFTLRDTFVDWIQVQNL--LLWLPGWDGIVPTPTILKP---KP 582
Query: 309 YWTSIQILQCALPLSFDC------------TGGRYLIRQSDILEFDLSRDVLPAVINEIA 356
WT Q+L +P + +I +I+ + + + A +
Sbjct: 583 LWTGKQLLSMCIPRGINVLRLPESRSHNPPADDGMMIENGEIIFGVVDKKTVGATQGGLV 642
Query: 357 ASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
VF KGP+ + F LQ ++ +F NGFS+G+ D
Sbjct: 643 HVVFREKGPEICRDLFSGLQMIVNFWLFHNGFSIGIGD 680
>R9AD30_WALIC (tr|R9AD30) DNA-directed RNA polymerase II subunit rpb1 OS=Wallemia
ichthyophaga EXF-994 GN=J056_001306 PE=4 SV=1
Length = 1752
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 96/341 (28%), Positives = 165/341 (48%), Gaps = 35/341 (10%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDE 140
+++ + K FS+R+VITGD ++EVG+P IA+ +T+ ERV +N+ +LQ+LV
Sbjct: 346 RLRGNLMGKRVDFSARTVITGDPNLELDEVGVPFSIARTLTYPERVTPYNLLYLQELV-R 404
Query: 141 NLCLAY-------KEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHS 193
N Y ++ LR + T+L+ G IV R + DGD V NR P+ HK S
Sbjct: 405 NGPTQYPGARYVVRDTGERIDLRYNRRADTFLQFGWIVERHLKDGDFVLFNRQPSLHKMS 464
Query: 194 LQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSS 253
+ V + T ++N + P ADFDGD ++L PQS +AE+ ++ +V +Q++S
Sbjct: 465 MMCHRVKLMPYSTFRLNLSVTPPYNADFDGDEMNLHVPQSEETRAEMSQIAAVTRQIVSP 524
Query: 254 HSGNLNLQLSTDSLLSL-KMLVKKGFMDRAAANQLAMFLSLP-----LPRPALLKAGSGD 307
+ + + + D+L + K+ ++ F+D + M+ +P +P PA+LK
Sbjct: 525 QANSPVMGIVQDALCGVRKLTLRDTFLDSKQVANILMW--VPGWDGLVPTPAVLKP---K 579
Query: 308 SYWTSIQILQCALPLSF--------------DCTGGRYLIRQSDILEFDLSRDVLPAVIN 353
W+ QIL +P D +G I +I+ + + +
Sbjct: 580 PLWSGKQILSLCIPRGINVFRSNEAKSSAPVDDSG--VCIEDGNIMYGAIDKSTVGKSQG 637
Query: 354 EIAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
+ +F KG +F LQ V+ + +GFS+G+ D
Sbjct: 638 GLVHVIFREKGHIVCKDFLSGLQVVVNYWMLHHGFSIGIGD 678
>K7XFL8_9EURO (tr|K7XFL8) DNA-directed RNA polymerase (Fragment) OS=Ascosphaera
torchioi GN=rpb1 PE=3 SV=1
Length = 1651
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 97/354 (27%), Positives = 167/354 (47%), Gaps = 33/354 (9%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDE 140
+++ + K FS+R+VITGD ++EVG+P+ IA+ +T+ E V +N+ L L+D
Sbjct: 262 RLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPISIARTLTYPEVVTPYNINKLGTLIDN 321
Query: 141 NLCL------AYKEGVSTYSLR--EGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKH 192
+ + LR +G G +L+ G V R I DGD++ NR P+ HK
Sbjct: 322 GPDVHPGARYVIRSTGERIDLRHHKGGGGRNFLQYGWKVERHIQDGDVILFNRQPSLHKE 381
Query: 193 SLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLS 252
S+ A V + T ++N + P ADFDGD ++L PQS A+AE+ EL V ++S
Sbjct: 382 SMMAHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEEARAELKELCLVPLNIVS 441
Query: 253 SHSGNLNLQLSTDSLLSL-KMLVKKGFMDRAAANQLAMFL---SLPLPRPALLKAGSGDS 308
+ + D+L + K+ + F+ + + M++ +P+PA+ K
Sbjct: 442 PQRNGPLMGIVQDTLCGIYKICRRDTFLTKEQVMNIMMWVPDWDGVIPQPAIFKP---RP 498
Query: 309 YWTSIQILQCALPLSFDC-----------------TGGRYLIRQSDILEFDLSRDVLPAV 351
WT QI+ LP + G + +++ S+ + A
Sbjct: 499 RWTGKQIISMVLPAGLNLLRLDKDKAPLGDRFSPPADGGLFVHGGELMFGMFSKKSVGAA 558
Query: 352 INEIAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD-FSISGAVKRV 404
I ++F G + ALNFF+ Q V+ + NGFS+G+ D +G ++++
Sbjct: 559 GGGIIHTIFNEYGHEVALNFFNGAQTVVNYWLLHNGFSIGIGDTIPDAGTIEKI 612
>G7E0H8_MIXOS (tr|G7E0H8) DNA-directed RNA polymerase OS=Mixia osmundae (strain
CBS 9802 / IAM 14324 / JCM 22182 / KY 12970) GN=Mo03004
PE=3 SV=1
Length = 2471
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 102/339 (30%), Positives = 165/339 (48%), Gaps = 30/339 (8%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLV-- 138
+++ + K FS+R+VITGD ++EVG+P IA+ +T+ ERV +N+ LQ LV
Sbjct: 371 RLRGNLMGKRVDFSARTVITGDPNLELDEVGVPESIAKNLTYPERVTPYNITALQALVAK 430
Query: 139 --DENLCLAY--KEGVSTYSLREGSKGHTY-LKPGQIVHRRIMDGDIVFINRPPTTHKHS 193
DE Y K+ LR G + L G IV R + +GD V NR P+ HK S
Sbjct: 431 GPDELPGARYVVKDSGDRIDLRYLPSGTSIDLAYGWIVERHLRNGDYVLFNRQPSLHKMS 490
Query: 194 LQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSS 253
+ A V + T ++N + P ADFDGD +++ PQS +AE+ ++ V +Q++S
Sbjct: 491 MMAHRVKLLPYSTFRLNLSVTPPYNADFDGDEMNMHVPQSEETRAELQQIAWVPRQIVSP 550
Query: 254 HSGNLNLQLSTDSLLSL-KMLVKKGFMDRAAANQLAMFLSLP---LPRPALLKAGSGDSY 309
+ + + D+L + K ++ FMDR + +++ LP PA++K
Sbjct: 551 QANKPVMGIVQDTLCGIRKFTLRDCFMDRDFVQNIMLWVPEWDGLLPPPAIVKP---KPM 607
Query: 310 WTSIQILQCALP--------------LSFDCTGGRYLIRQSDILEFDLSRDVLPAVINEI 355
WT QIL +P L D +G L+ +I +++ + A +
Sbjct: 608 WTGKQILSMCIPRGVNLFIDNEAHSSLPDDDSG--VLVDDGEIYYGVINKKTVGAQRESL 665
Query: 356 AASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
+F KGP+ FF +Q V+ + NGFS+G+ D
Sbjct: 666 VDLIFREKGPEICRLFFTGVQKVVNFWLLHNGFSIGIGD 704
>Q2PYQ8_9GLOM (tr|Q2PYQ8) DNA-directed RNA polymerase (Fragment) OS=Paraglomus
occultum GN=RPB1 PE=3 SV=1
Length = 847
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 97/346 (28%), Positives = 161/346 (46%), Gaps = 38/346 (10%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDE 140
+++ + K FS+R+VITGD ++EVG+P IA+ +T+ E V N+ LQ+LV
Sbjct: 100 RLRGNLMGKRVDFSARTVITGDPNISVDEVGVPRSIARNLTYPELVTRLNIDHLQELVRN 159
Query: 141 NLCLAYKEGVSTYSLREGSK----------GHTYLKPGQIVHRRIMDGDIVFINRPPTTH 190
+ + Y +R+ + G L+ G V R I DGDIV NR P+ H
Sbjct: 160 G---PSEHPGAKYVIRDTGERIDLKHYKRAGEVRLQIGWKVERHIDDGDIVIFNRQPSLH 216
Query: 191 KHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQL 250
K S+ V + T ++N + P ADFDGD +++ PQS+ KAE++E+ V KQ+
Sbjct: 217 KMSMMGHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNMHIPQSVETKAEIMEICMVPKQI 276
Query: 251 LSSHSGNLNLQLSTDSLLSLKMLVKKG-FMDRAAANQLAMFL---SLPLPRPALLKAGSG 306
+S S + + D+L +++ K+ F+ R + M++ +P P +LK
Sbjct: 277 VSPQSNKPVMGIVQDTLCAIRKFTKRDCFLTRDLVMNILMWVPDWDGHIPIPCILKPV-- 334
Query: 307 DSYWTSIQILQCALPLSFDCTGGRY------------------LIRQSDILEFDLSRDVL 348
WT QIL +P + R+ LI ++L + + +
Sbjct: 335 -PMWTGKQILSIIIPKGVNSDNLRHSTHPDNETSDISPGDTKVLIEDGELLSGIVCKKTV 393
Query: 349 PAVINEIAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
+ + GP+ A NF + Q V+ + NGFS+G+ D
Sbjct: 394 GTSQQGLIHVIMQELGPEAAKNFLNGCQGVVNYWLLQNGFSIGIGD 439
>M7WX53_RHOTO (tr|M7WX53) DNA-directed RNA polymerase II subunit RPB1
OS=Rhodosporidium toruloides NP11 GN=RHTO_08014 PE=4
SV=1
Length = 1770
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 95/336 (28%), Positives = 163/336 (48%), Gaps = 25/336 (7%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLV-- 138
+++ + K FS+R+VITGD ++EVG+P IA+ +T+ ERV +N+ LQ LV
Sbjct: 348 RLRGNLMGKRVDFSARTVITGDPNLALDEVGVPYSIARTLTYPERVTPYNIQDLQTLVRN 407
Query: 139 --DENLCLAY--KEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSL 194
+E Y ++ LR + T+L+ G IV R + DGDIV NR P+ HK S+
Sbjct: 408 GPNEYPGARYVVRDTGDRIDLRYNKRADTFLQYGWIVERHLKDGDIVLFNRQPSLHKMSM 467
Query: 195 QALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSH 254
A V + T ++N + P ADFDGD ++L PQS ++E++ + +V + ++S
Sbjct: 468 MAHRVKLMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRSELINIAAVARNIISPQ 527
Query: 255 SGNLNLQLSTDSLLSLKMLVKKG-FMDRAAANQLAMFLSL---PLPRPALLKAGSGDSYW 310
+ + + D+L ++ +G FMD + +++ +P PA+LK W
Sbjct: 528 ANKPVMGIVQDTLCGIRKFTLRGCFMDLEFIQNILLWVPEWDGVIPPPAILKP---KPLW 584
Query: 311 TSIQILQCALPLS---FDCTGGRYLIRQSDILEFDLSRDVLPAVINEIAAS--------- 358
T QIL +P + +G D F V+ +++
Sbjct: 585 TGKQILSMCIPAGINLYRASGSGTTNPPEDDGMFIEDGQVMFGTVDKKTVGTSQGGLIHV 644
Query: 359 VFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
++ KG + ++F +Q V+ + NGFS+G+ D
Sbjct: 645 IYREKGHEVCRDWFSGVQKVVNFWLLHNGFSIGIGD 680
>A5H295_9LECA (tr|A5H295) DNA-directed RNA polymerase (Fragment) OS=Protopannaria
pezizoides GN=RPB1 PE=3 SV=1
Length = 1016
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 98/338 (28%), Positives = 164/338 (48%), Gaps = 29/338 (8%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLV-- 138
+++ + K FS+R+VITGD ++EVG+P IA+ +T+ E V +N+ L +LV
Sbjct: 270 RLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKN 329
Query: 139 --DENLCLAY--KEGVSTYSLREGSK-GHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHS 193
+E+ Y ++ LR + G L+ G V R I+DGD + NR P+ HK S
Sbjct: 330 GPNEHPGAKYVIRDSGERIDLRHHKRAGEISLQYGWKVERHIVDGDYIIFNRQPSLHKES 389
Query: 194 LQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSS 253
+ V + T ++N + P ADFDGD ++L PQS +AE+ +L V ++S
Sbjct: 390 MMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCMVPLNIVSP 449
Query: 254 HSGNLNLQLSTDSLLSL-KMLVKKGFMDRAAANQLAMFLSLP-----LPRPALLKAGSGD 307
+ + D+L + KM + F+ + + + L +P LP+PA+LK
Sbjct: 450 QRNGPLMGIVQDTLCGIYKMCRRDVFLSKEQV--MNILLWVPDWDGILPQPAILKP---R 504
Query: 308 SYWTSIQILQCALPLSFDCT-----------GGRYLIRQSDILEFDLSRDVLPAVINEIA 356
WT QI+ +P + T L+ ++ L++ + A + I
Sbjct: 505 PKWTGKQIISLVVPAGLNLTRPSSEGFSPVNDDGLLVSGGKLMYGLLNKKSVGATSSGII 564
Query: 357 ASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
+F KG + A+NFF+ Q V+ + NGFS+G+ D
Sbjct: 565 HVIFNEKGSEAAMNFFNGAQTVVNYWLLHNGFSIGIGD 602
>I7B979_9ASCO (tr|I7B979) DNA-directed RNA polymerase (Fragment) OS=Saitoella
complicata PE=3 SV=1
Length = 645
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 107/381 (28%), Positives = 177/381 (46%), Gaps = 44/381 (11%)
Query: 93 FSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDENLC------LAY 146
FS+R+VITGD ++E+G+P IA+ +T+ ERV +N+ L +LV
Sbjct: 158 FSARTVITGDPNLGLDELGVPRXIAKTLTYPERVTPYNIKKLTELVRNGPTEHPGAKFVI 217
Query: 147 KEGVSTYSLR-EGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALVVYIHDDH 205
+E LR + G L G IV R I DGD+V NR P+ HK S+ + +
Sbjct: 218 RESGDRMDLRFNKTAGSIALHYGDIVERHINDGDVVLFNRQPSLHKMSMMCHKIKVMPYS 277
Query: 206 TVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHSGNLNLQLSTD 265
T ++N + P ADFDGD +++ PQS +AE+ + V +Q++S S + + D
Sbjct: 278 TFRLNLSVTTPYNADFDGDEMNMHVPQSEETRAELGGICWVPRQIVSPQSNKPVMGIVQD 337
Query: 266 SLLSLKMLVKKGFMDRAAANQLAMFLSLP-----LPRPALLKAGSGDSYWTSIQILQCAL 320
+L ++ L + M A + + L +P +P PA++K WT QIL A+
Sbjct: 338 TLCGVRKLTLRDEMLSKDA-VMNILLHVPEWDGYMPPPAIMKP---KPMWTGKQILSKAI 393
Query: 321 PLSFDCT---GGRY--------LIRQSDILEFDLSRDVLPAVINEIAASVFFGKGPQEAL 369
P + + G Y LI +I+ + + + A + + KGP+
Sbjct: 394 PKGINLSREDGKDYNPLSDAGMLIMDGEIIYGVVDKKTVGATPGGLVHIIMREKGPEVCR 453
Query: 370 NFFDVLQPVLMESIFSNGFSVGLHDF------------SISGAVKRVT----DRNIGKVS 413
+FF+ +Q V NGFS+G+ D +I+ A RVT D ++ ++
Sbjct: 454 DFFNGIQRVTNYWFLHNGFSIGIGDTIADPKTMQSINETIAAAKDRVTAIINDAHLNRLK 513
Query: 414 P-LLYQLRFIYNELVAQQLEK 433
P LR + V+++L +
Sbjct: 514 PDAGMTLRITFESKVSKELNE 534
>F0WAT9_9STRA (tr|F0WAT9) DNA-directed RNA polymerase OS=Albugo laibachii Nc14
GN=AlNc14C47G3801 PE=3 SV=1
Length = 1819
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 96/350 (27%), Positives = 162/350 (46%), Gaps = 39/350 (11%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDE 140
+++ + K FS+R+VIT D I++VG+PL IA +T ERV NM + +L+
Sbjct: 341 RIRGNLMGKRVDFSARTVITADPNLEIDQVGVPLSIAMNLTVPERVTPFNMAAMHQLISN 400
Query: 141 NLCLAYKEGVSTYSLREG----------SKGHTYLKPGQIVHRRIMDGDIVFINRPPTTH 190
+ + Y +RE +K LK G IV R + D D+V NR P+ H
Sbjct: 401 G---PLEHPGAKYIIREDGNRIDLRYIKNKSDLALKCGWIVERHLRDEDLVLFNRQPSLH 457
Query: 191 KHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQL 250
K S+ + V + T ++N + P ADFDGD ++L PQSL A+AE EL V K +
Sbjct: 458 KMSIMSHRVKVFHWSTFRLNLSVTSPYNADFDGDEMNLHVPQSLTARAEAQELMMVHKVI 517
Query: 251 LSSHSGNLNLQLSTDSLLSLKMLVKKG-FMDRAAANQLAMFL---SLPLPRPALLKAGSG 306
++ S + + DSLL ++ K+ F+++ L M++ +P PA+L G
Sbjct: 518 ITPQSNRPVMGIVQDSLLGVQKFTKRDIFIEKDVVMNLLMWVFNWDGRIPTPAILVPKKG 577
Query: 307 D-----SYWTSIQILQCALP----LSFDCT-------------GGRYLIRQSDILEFDLS 344
+ WT Q+ +P F T R ++++ ++L +
Sbjct: 578 EIGKYRPIWTGKQMFSQVIPDINFTGFSSTHSSKESFAKLSPIDSRVIVQRGELLAGIID 637
Query: 345 RDVLPAVINEIAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
+ + + + + KGP+EA F +Q ++ + F+VG+ D
Sbjct: 638 KKTIGSSAGGLIHTTMLEKGPEEAKYFLGAVQKLVNNWLVGRSFTVGVSD 687
>M3C1A1_9PEZI (tr|M3C1A1) DNA-directed RNA polymerase OS=Mycosphaerella populorum
SO2202 GN=SEPMUDRAFT_62102 PE=3 SV=1
Length = 1780
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 96/340 (28%), Positives = 163/340 (47%), Gaps = 30/340 (8%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLV-- 138
+++ + K FS+R+VITGD +++VG+P A+ +TF ERV +N+ L +LV
Sbjct: 348 RLRGNLMGKRVDFSARTVITGDPNLDLDQVGVPRSTARVLTFPERVTPYNIHKLSELVRN 407
Query: 139 --DENLCLAY--KEGVSTYSLREGSK-GHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHS 193
E+ + +E S LR + G L+ G IV R I+DGD + NR P+ HK S
Sbjct: 408 GPSEHPGAKHIIREDGSRIDLRYHKRAGEIQLQNGWIVERHIVDGDYIIFNRQPSLHKES 467
Query: 194 LQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSS 253
+ V + T ++N + P ADFDGD ++L PQS ++EV L +V ++S
Sbjct: 468 MMGHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSHETRSEVANLCAVPHNIVSP 527
Query: 254 HSGNLNLQLSTDSLLSLKMLVKKGFMDRAAANQLAMFLSLP-----LPRPALLKAGSGDS 308
+ + D++ + M+ K+ M + + L +P +P+PA+LK
Sbjct: 528 QKNGPLMGIVQDTMAGIYMMTKRDTM-MDYEQVMNIMLWVPGWDGIVPQPAILKP---VP 583
Query: 309 YWTSIQILQCALP--------------LSFDCTGGRYLIRQSDILEFDLSRDVLPAVINE 354
WT QI+ LP +S L++ +++ L++ ++ A
Sbjct: 584 RWTGKQIMSMGLPSGLNIMKLGDDEDHISLAEADSSVLVQNGELVWGRLTKKLVGASGGG 643
Query: 355 IAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
I +F +G + FF+ Q ++ + NGFSVG+ D
Sbjct: 644 IVHLIFNDRGTDATVEFFNAAQRIVCYWLLHNGFSVGIGD 683
>A7J593_9LECA (tr|A7J593) DNA-directed RNA polymerase (Fragment) OS=Pleopsidium
gobiense GN=RPB1 PE=3 SV=1
Length = 1017
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 97/338 (28%), Positives = 163/338 (48%), Gaps = 29/338 (8%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLV-- 138
+++ + K FS+R+VITGD ++EVG+P IA+ +T+ E V +N+ L +LV
Sbjct: 273 RLRGNLMGKRVDFSARTVITGDPNISLDEVGVPRSIARTLTYPETVTPYNIHKLHQLVKN 332
Query: 139 --DENLCLAY--KEGVSTYSLREGSK-GHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHS 193
+E+ Y ++ LR + G L+ G V R I+DGD + NR P+ HK S
Sbjct: 333 GPNEHPGAKYVIRDSGERIDLRHHKRAGEISLQYGWKVERHIVDGDYIIFNRQPSLHKES 392
Query: 194 LQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSS 253
+ V + T ++N + P ADFDGD ++L PQS +AE+ +L V ++S
Sbjct: 393 MMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCMVPLNIVSP 452
Query: 254 HSGNLNLQLSTDSLLSL-KMLVKKGFMDRAAANQLAMFLSLP-----LPRPALLKAGSGD 307
+ + D+L + KM + F+ + + + L +P +P+PA+LK
Sbjct: 453 QRNGPLMGIVQDTLCGIYKMCRRDVFLTKEQV--MNILLWVPDWDGVIPQPAILKP---R 507
Query: 308 SYWTSIQILQCALPLSFDCTGGR-----------YLIRQSDILEFDLSRDVLPAVINEIA 356
WT QI+ +P + G + +++ S+ + A I
Sbjct: 508 PTWTGKQIVSLVIPKGLNLIRGSEEGLSPANDDGLFVHGGELMYGLFSKKSVGASGGGII 567
Query: 357 ASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
+F KGP+ A+NFF+ Q V+ + NGFS+G+ D
Sbjct: 568 HIIFNEKGPEVAMNFFNGAQTVVNYWLLHNGFSIGIGD 605
>A5H277_9LECA (tr|A5H277) DNA-directed RNA polymerase (Fragment)
OS=Flavopunctelia flaventior GN=RPB1 PE=3 SV=1
Length = 995
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 97/338 (28%), Positives = 164/338 (48%), Gaps = 29/338 (8%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLV-- 138
+++ + K FS+R+VITGD ++EVG+P IA+ +T+ E V +N+ L +LV
Sbjct: 263 RLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIHKLHQLVKN 322
Query: 139 --DENLCLAY--KEGVSTYSLREGSK-GHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHS 193
+E+ Y ++ LR + G L+ G V R I+DG+ + NR P HK S
Sbjct: 323 GPNEHPGAKYVIRDTGERIDLRHHKRAGEISLQYGWKVERHIVDGNYIIFNRQPXXHKES 382
Query: 194 LQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSS 253
+ V + T ++N + P ADFDGD ++L PQS +AE+ +L V ++S
Sbjct: 383 MMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCMVPLNIVSP 442
Query: 254 HSGNLNLQLSTDSLLSL-KMLVKKGFMDRAAANQLAMFLSLP-----LPRPALLKAGSGD 307
+ + D+L + KM + F+ + + + L +P +P+PA++K
Sbjct: 443 QRNGPLMGIVQDTLCGIYKMCRRDVFLTKEQV--MNILLWVPDWDGVIPQPAIVKP---L 497
Query: 308 SYWTSIQILQCALPLSFDCTGGR-----------YLIRQSDILEFDLSRDVLPAVINEIA 356
+ WT QIL +P + G LI +++ L++ + A +
Sbjct: 498 AMWTGKQILSLVIPTGLNLLRGNEEGFSPLNDDGLLISSGELMYGLLAKKTVGASGGGVI 557
Query: 357 ASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
VF KGP+ A+ FF+ Q V+ + NGFS+G+ D
Sbjct: 558 HIVFNEKGPEAAMTFFNGAQTVVNYWLLHNGFSIGIGD 595
>A1CNZ4_ASPCL (tr|A1CNZ4) DNA-directed RNA polymerase OS=Aspergillus clavatus
(strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 /
NRRL 1) GN=ACLA_020720 PE=3 SV=1
Length = 1765
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 101/351 (28%), Positives = 171/351 (48%), Gaps = 36/351 (10%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLV-- 138
+++ + K FS+R+VITGD ++EVG+P IA+ +T+ E V +N+ LQ+LV
Sbjct: 352 RLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPEVVTPYNIEKLQQLVAN 411
Query: 139 --DENLCLAY--KEGVSTYSLREGSK-GHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHS 193
+E+ Y ++ LR + G L G V R +MDGD++ NR P+ HK S
Sbjct: 412 GPNEHPGARYIVRDNGERIDLRHARRAGGQQLLYGWKVERHLMDGDVILFNRQPSLHKES 471
Query: 194 LQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSS 253
+ A V + T ++N + P ADFDGD ++L PQS ++AE+ +L V ++S
Sbjct: 472 MMAHRVRVMPYSTFRMNLSVTTPYNADFDGDEMNLHVPQSEESRAELSQLALVPMNIVSP 531
Query: 254 HSGNLNLQLSTDSLLSLKMLVKKG-FMDRAAANQLAMFLSLP-----LPRPALLKAGSGD 307
+ + D+L + + ++ F+ + + + L +P +P PA+LK
Sbjct: 532 QRNGPLMGIVQDTLCGIYKICRRDIFLTKEQV--MNIMLWVPDWDGVIPPPAILKP---R 586
Query: 308 SYWTSIQILQCALPLSFD-----------------CTGGRYLIRQSDILEFDLSRDVLPA 350
WT Q++ ALP + T G LI ++ LS+ + A
Sbjct: 587 PRWTGKQMISMALPSGLNLLRVEKDNSSLAEKFSPLTDGGVLIHGGQLMYGMLSKKTVGA 646
Query: 351 VINEIAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDFSISGAV 401
+ ++F GP+ A+ FF+ Q ++ + NGFS+G+ D +I AV
Sbjct: 647 SGGGVIHTIFNEYGPETAVAFFNGAQTIVNYWLLHNGFSIGIGD-TIPDAV 696
>Q0PQ00_9LECA (tr|Q0PQ00) DNA-directed RNA polymerase (Fragment) OS=Umbilicaria
mammulata GN=RPB1 PE=3 SV=1
Length = 1014
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 101/344 (29%), Positives = 166/344 (48%), Gaps = 41/344 (11%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLV-- 138
+++ + K FS+R+VITGD ++EVG+P IA+ +T+ E V +N+ L +LV
Sbjct: 270 RLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKN 329
Query: 139 --DENLCLAY--KEGVSTYSLREGSK-GHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHS 193
+E+ Y ++ LR + G L+ G V R I+DGD + NR P+ HK S
Sbjct: 330 GPNEHPGAKYVIRDSGERIDLRHHKRAGEISLQYGWKVERHIVDGDYIIFNRQPSLHKES 389
Query: 194 LQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSS 253
+ V + T ++N + P ADFDGD ++L PQS +AE+ +L V ++S
Sbjct: 390 MMGHRVRVVPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCMVPLNIVSP 449
Query: 254 HSGNLNLQLSTDSLLSL-KMLVKKGFMDRAAANQLAMFLSLP-----LPRPALLKAGSGD 307
+ + D+L + KM + F+ + + + L +P +P+PA+LK
Sbjct: 450 QRNGPLMGIVQDTLCGIYKMCRRDVFLTKDQV--MNILLWVPDWDGVIPQPAILKP---R 504
Query: 308 SYWTSIQILQCALPLSFDCTGGRYLIRQS-----------------DILEFDLSRDVLPA 350
WT Q++ +P G LIR S +++ LS+ + A
Sbjct: 505 PKWTGKQLISLVIP------AGLNLIRTSEEGLSPANDDGLFVHGGELMYGLLSKKSVGA 558
Query: 351 VINEIAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
I +F KGP+ A+NFF+ Q V+ + NGFS+G+ D
Sbjct: 559 SAGGIIHIIFNEKGPEAAMNFFNGAQTVVNYWLLHNGFSIGIGD 602
>I0Z9A9_9CHLO (tr|I0Z9A9) DNA-directed RNA polymerase OS=Coccomyxa subellipsoidea
C-169 GN=COCSUDRAFT_26599 PE=3 SV=1
Length = 1566
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 90/344 (26%), Positives = 160/344 (46%), Gaps = 33/344 (9%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDE 140
+++ + K FS+R+VI+GD I+E+G+P IA +T+ E V HN +LQ+LV+
Sbjct: 266 RVRGNLMGKRVDFSARTVISGDPNISIDELGVPWSIALNLTYPETVTPHNYKWLQQLVEN 325
Query: 141 NLCLAYKEGVSTYSLREGSK----------GHTYLKPGQIVHRRIMDGDIVFINRPPTTH 190
+ + Y +RE + +L+ G V R +++GD V NR P+ H
Sbjct: 326 GPHPPAGQTGAKYIIREDGQRLDLRFLRKDSDRHLEFGYKVERHLVNGDYVLFNRQPSLH 385
Query: 191 KHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQL 250
K S+ V I T ++N + P ADFDGD +++ PQ+ + E E+ V + +
Sbjct: 386 KMSMMGHKVRILPYSTFRLNLSVTSPYNADFDGDEMNMHVPQTPETRTETREIMMVPRNI 445
Query: 251 LSSHSGNLNLQLSTDSLLSLKMLVKKG-FMDRAAANQLAMFLS---LPLPRPALLKAGSG 306
+S + + + D+LL +++ K+ F+++ + M+L +P PA+LK
Sbjct: 446 VSPQANKPVIGIVQDTLLGCRLMTKRDTFIEKDLFMNILMWLEDWDGKIPMPAILKP--- 502
Query: 307 DSYWTSIQILQCAL----------------PLSFDCTGGRYLIRQSDILEFDLSRDVLPA 350
WT Q+ + PL F + + LI+ ++L L + L A
Sbjct: 503 KPLWTGKQVYNLFMPRVNIRRQSAWYKDNEPLDFSPSDSQVLIQNGELLTGTLCKKTLGA 562
Query: 351 VINEIAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
+ ++ +GP+ A F Q + +GFS+G+ D
Sbjct: 563 SAGSLIHVIWMEEGPEAARAFLSQSQYTTNHWLLQHGFSIGIGD 606
>M5FQ84_DACSP (tr|M5FQ84) Subunit of DNA dependent RNA-polymerase OS=Dacryopinax
sp. (strain DJM 731) GN=DACRYDRAFT_118311 PE=4 SV=1
Length = 1770
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 91/337 (27%), Positives = 163/337 (48%), Gaps = 29/337 (8%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDE 140
+++ + K FS+R+VITGD ++EVG+P IA +T+ ERV +N+ L +LV
Sbjct: 348 RLRGNLMGKRVDFSARTVITGDPNIALDEVGVPRSIAMTLTYPERVTKYNLERLTELV-R 406
Query: 141 NLCLAYKEGVSTYSLREGS--------KGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKH 192
N + Y + Y +R+ +G L+ G +V R + DGD V NR P+ HK
Sbjct: 407 NGPVEYPG--ARYIIRDTGERIDLRYKRGDVSLQIGWVVERHLRDGDYVLFNRQPSLHKM 464
Query: 193 SLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLS 252
S+ + V + T ++N + P ADFDGD ++L PQS +AE+ E+ V +Q++S
Sbjct: 465 SMMSHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELKEIAWVPRQIVS 524
Query: 253 SHSGNLNLQLSTDSLLSL-KMLVKKGFMDRAAANQLAMFL---SLPLPRPALLKAGSGDS 308
+ + + D+L + KM + F+D + +++ +P P ++K
Sbjct: 525 PQANKPVMGIVQDTLCGIYKMTQRDIFLDWPLVQNILLWVPDWDGTIPHPCIIKP---KP 581
Query: 309 YWTSIQILQCALPLSFDCTGGR-----------YLIRQSDILEFDLSRDVLPAVINEIAA 357
W+ QI+ +P + G +I +I+ ++ ++ + +
Sbjct: 582 MWSGKQIIALVIPQGINLANGNLSIGNPINDDALIIENGEIMMGIFNKGIVGSSAGGLIH 641
Query: 358 SVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
VF +GP+ + +Q V+ +F NGFS+G+ D
Sbjct: 642 VVFRERGPEVTRDMIGGIQTVVNYWLFHNGFSIGIGD 678
>A7J586_9LECA (tr|A7J586) DNA-directed RNA polymerase (Fragment) OS=Lobariella
pallida GN=RPB1 PE=3 SV=1
Length = 996
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 95/338 (28%), Positives = 163/338 (48%), Gaps = 29/338 (8%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLV-- 138
+++ + K FS+R+VITGD ++EVG+P IA+ +T+ E V +N+ L +LV
Sbjct: 250 RLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKN 309
Query: 139 --DENLCLAY--KEGVSTYSLREGSK-GHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHS 193
+++ Y ++ LR + G L+ G V R I+DGD + NR P+ HK S
Sbjct: 310 GPNDHPGAKYVIRDSGERIDLRHHKRAGEISLQYGWKVERHIIDGDYIIFNRQPSLHKES 369
Query: 194 LQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSS 253
+ V + T ++N + P ADFDGD ++L PQS +AE+ +L V ++S
Sbjct: 370 MMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCMVPLNIVSP 429
Query: 254 HSGNLNLQLSTDSLLSLKMLVKKG-FMDRAAANQLAMFLSLP-----LPRPALLKAGSGD 307
+ + D+L + L ++ F+++ + + L +P LP+PA+LK
Sbjct: 430 QRNGPLMGIVQDTLCGIYKLCRRDVFLNKEQV--MNILLWVPDWDGVLPQPAILKP---R 484
Query: 308 SYWTSIQILQCALPLSFDCTGGR-----------YLIRQSDILEFDLSRDVLPAVINEIA 356
WT QI+ +P + T + +++ + + A I
Sbjct: 485 PKWTGKQIISLVIPPGLNLTRSSSEGFSPLNDDGLFVSGGELMYGLFDKKSVGATSGGII 544
Query: 357 ASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
+F KGP+ A+NFF+ Q V+ + NGFS+G+ D
Sbjct: 545 HIIFNEKGPEAAMNFFNGAQTVVNYWLLHNGFSIGIGD 582
>B6QAY2_PENMQ (tr|B6QAY2) DNA-directed RNA polymerase OS=Penicillium marneffei
(strain ATCC 18224 / CBS 334.59 / QM 7333)
GN=PMAA_074330 PE=3 SV=1
Length = 1744
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 93/343 (27%), Positives = 161/343 (46%), Gaps = 34/343 (9%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDE 140
+++ + K FS+R+VI GD + EVG P A +T+ E V +N+ FLQKLV+
Sbjct: 352 RLRQNLMGKRVDFSARTVICGDPNLSLEEVGTPRSTAMILTYPEVVTPYNIEFLQKLVNN 411
Query: 141 NLCL------AYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSL 194
+ ++ LR K + L G V R ++DGD++ NR P+ HK S+
Sbjct: 412 GPTIYPGARYIVRDNGERIDLRMARKTNANLLYGWKVERHLLDGDVILFNRQPSLHKESM 471
Query: 195 QALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSH 254
V + T ++N + P ADFDGD +++ PQS A+AE+++L V ++S
Sbjct: 472 MGHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNMHVPQSEEARAELLQLALVPNNIVSPQ 531
Query: 255 SGNLNLQLSTDSLLSLKMLVKKG-FMDRAAANQLAMFLSLP-----LPRPALLKAGSGDS 308
+ + DSL + + ++ F+ + + + L +P +P+PA++K
Sbjct: 532 RNGPLMGIVQDSLCGIYKICRRDVFLTKDQV--MNLMLWVPDWDGVIPQPAIIKP---RP 586
Query: 309 YWTSIQILQCALPLSFD-----------------CTGGRYLIRQSDILEFDLSRDVLPAV 351
WT QI+ LP + T G L+ ++ S+ + A
Sbjct: 587 RWTGKQIISMVLPSGLNLLRVDKDKAPLSEKFSPLTDGGILVHGGQLMYGMFSKKTVGAS 646
Query: 352 INEIAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
+ ++F GP+ A++FF+ Q V+ + NGFS+G+ D
Sbjct: 647 GGGVVHTIFNEYGPEAAVSFFNGAQRVVNYWLLHNGFSIGIGD 689
>F9X8Y2_MYCGM (tr|F9X8Y2) DNA-directed RNA polymerase OS=Mycosphaerella
graminicola (strain CBS 115943 / IPO323)
GN=MYCGRDRAFT_99873 PE=3 SV=1
Length = 1773
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 94/339 (27%), Positives = 162/339 (47%), Gaps = 29/339 (8%)
Query: 81 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLV-- 138
+++ + K FS+R+VITGD +++VG+P A+ +TF ERV ++N+ +Q+LV
Sbjct: 348 RLRGNLMGKRVDFSARTVITGDPNLDLDQVGVPRSTARVLTFPERVTVYNIHKMQELVRN 407
Query: 139 --DENLCLAY--KEGVSTYSLREGSK-GHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHS 193
D++ + +E S LR + G L+ G IV R I+DGD + NR P+ HK S
Sbjct: 408 GPDQHPGAKHVIREDGSRIDLRYHKRAGEIQLQLGWIVERHIVDGDYIIFNRQPSLHKES 467
Query: 194 LQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSS 253
+ V + T ++N + P ADFDGD ++L PQ +AEV L +V ++S
Sbjct: 468 MMGHRVKVMPYSTFRMNLSVTSPYNADFDGDEMNLHVPQGHETRAEVANLCAVPHNIVSP 527
Query: 254 HSGNLNLQLSTDSLLSLKMLVKKGFMDRAAANQLAMFLSLP-----LPRPALLKAGSGDS 308
+ + D++ M+ KK M + + L +P +P PA++K
Sbjct: 528 QKNGPLMGIVQDTMAGCWMMTKKDVM-IDYQELMNILLWVPSWDGVVPPPAIIKP---QP 583
Query: 309 YWTSIQILQCALPLSFDC-------------TGGRYLIRQSDILEFDLSRDVLPAVINEI 355
WT Q+ P + L++ +I+ + + V+ A + +
Sbjct: 584 RWTGKQVASLFFPPGLNYFMPASKNDDNPHEEKKEILVQNGEIMWGRIWKQVVGASQSGV 643
Query: 356 AASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHD 394
+F +GP+ A+ FF Q ++ + +GFSVG+ D
Sbjct: 644 VHYIFNDRGPEAAVEFFSGCQRIVCHWMLHHGFSVGIGD 682