Miyakogusa Predicted Gene

Lj0g3v0218689.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0218689.1 tr|G7K0D4|G7K0D4_MEDTR RRNA intron-encoded homing
endonuclease OS=Medicago truncatula GN=MTR_5g05102,84.21,0.00000001,
,CUFF.14139.1
         (45 letters)

Database: trembl 
           41,451,118 sequences; 13,208,986,710 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M1DWM7_SOLTU (tr|M1DWM7) Uncharacterized protein OS=Solanum tube...    66   4e-09
G7K0D4_MEDTR (tr|G7K0D4) RRNA intron-encoded homing endonuclease...    64   2e-08
G7K0D8_MEDTR (tr|G7K0D8) RRNA intron-encoded homing endonuclease...    64   2e-08
G7K0D6_MEDTR (tr|G7K0D6) RRNA intron-encoded homing endonuclease...    62   5e-08
B8A8W0_ORYSI (tr|B8A8W0) Putative uncharacterized protein OS=Ory...    57   3e-06
M1DPC2_SOLTU (tr|M1DPC2) Uncharacterized protein OS=Solanum tube...    56   5e-06

>M1DWM7_SOLTU (tr|M1DWM7) Uncharacterized protein OS=Solanum tuberosum
           GN=PGSC0003DMG400045158 PE=4 SV=1
          Length = 138

 Score = 66.2 bits (160), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/45 (68%), Positives = 37/45 (82%), Gaps = 1/45 (2%)

Query: 1   MHLLDKRSTQALPVALMMIHDNSSDCTTFVPMTHHSNFCPINFRW 45
           +HLLD RST+ LP+ + MIHDNS+D TT V + HHSNFCPINFRW
Sbjct: 95  IHLLDGRSTRDLPI-IAMIHDNSTDRTTIVMVMHHSNFCPINFRW 138


>G7K0D4_MEDTR (tr|G7K0D4) RRNA intron-encoded homing endonuclease OS=Medicago
            truncatula GN=MTR_5g051020 PE=4 SV=1
          Length = 1330

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/38 (84%), Positives = 32/38 (84%), Gaps = 1/38 (2%)

Query: 1    MHLLDKRSTQALPVALMMIHDNSSDCTTFVPMTHHSNF 38
            MHLLDKRSTQALPVAL MIHDNSSD T  V  THHSNF
Sbjct: 1021 MHLLDKRSTQALPVAL-MIHDNSSDRTALVLATHHSNF 1057


>G7K0D8_MEDTR (tr|G7K0D8) RRNA intron-encoded homing endonuclease OS=Medicago
           truncatula GN=MTR_5g051060 PE=4 SV=1
          Length = 446

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/38 (84%), Positives = 32/38 (84%), Gaps = 1/38 (2%)

Query: 1   MHLLDKRSTQALPVALMMIHDNSSDCTTFVPMTHHSNF 38
           MHLLDKRSTQALPVAL MIHDNSSD T  V  THHSNF
Sbjct: 114 MHLLDKRSTQALPVAL-MIHDNSSDRTALVLATHHSNF 150


>G7K0D6_MEDTR (tr|G7K0D6) RRNA intron-encoded homing endonuclease OS=Medicago
           truncatula GN=MTR_5g051040 PE=4 SV=1
          Length = 1440

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 32/38 (84%), Positives = 32/38 (84%), Gaps = 1/38 (2%)

Query: 1   MHLLDKRSTQALPVALMMIHDNSSDCTTFVPMTHHSNF 38
           MHLLDKRSTQALPVAL MIHDNSSD T  V  THHSNF
Sbjct: 638 MHLLDKRSTQALPVAL-MIHDNSSDRTALVLATHHSNF 674



 Score = 62.4 bits (150), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 32/38 (84%), Positives = 32/38 (84%), Gaps = 1/38 (2%)

Query: 1    MHLLDKRSTQALPVALMMIHDNSSDCTTFVPMTHHSNF 38
            MHLLDKRSTQALPVAL MIHDNSSD T  V  THHSNF
Sbjct: 1174 MHLLDKRSTQALPVAL-MIHDNSSDRTALVLATHHSNF 1210


>B8A8W0_ORYSI (tr|B8A8W0) Putative uncharacterized protein OS=Oryza sativa
          subsp. indica GN=OsI_02128 PE=4 SV=1
          Length = 67

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/28 (82%), Positives = 24/28 (85%)

Query: 18 MIHDNSSDCTTFVPMTHHSNFCPINFRW 45
          MIHDNS+D T  VP THHSNFCPINFRW
Sbjct: 1  MIHDNSTDRTALVPATHHSNFCPINFRW 28


>M1DPC2_SOLTU (tr|M1DPC2) Uncharacterized protein OS=Solanum tuberosum
           GN=PGSC0003DMG400041789 PE=4 SV=1
          Length = 282

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 34/42 (80%), Gaps = 1/42 (2%)

Query: 1   MHLLDKRSTQALPVALMMIHDNSSDCTTFVPMTHHSNFCPIN 42
           +HLLDKRST+ LP+ + +IHDNS+D  T V +THHSNF PIN
Sbjct: 112 IHLLDKRSTRDLPI-IAIIHDNSTDRKTIVTVTHHSNFYPIN 152