Miyakogusa Predicted Gene

Lj0g3v0206589.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0206589.1 Non Chatacterized Hit- tr|B9SS09|B9SS09_RICCO
Pentatricopeptide repeat-containing protein, putative ,60,0.00000001,
,CUFF.13217.1
         (70 letters)

Database: trembl 
           41,451,118 sequences; 13,208,986,710 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9SS09_RICCO (tr|B9SS09) Pentatricopeptide repeat-containing pro...    64   2e-08
F6HTB8_VITVI (tr|F6HTB8) Putative uncharacterized protein OS=Vit...    59   6e-07
B9N2S4_POPTR (tr|B9N2S4) Predicted protein OS=Populus trichocarp...    57   2e-06

>B9SS09_RICCO (tr|B9SS09) Pentatricopeptide repeat-containing protein, putative
           OS=Ricinus communis GN=RCOM_0519630 PE=4 SV=1
          Length = 518

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/50 (60%), Positives = 37/50 (74%), Gaps = 1/50 (2%)

Query: 20  HQQLLLAVE-SCHGIQQFNQVHSQLIVRGLFHHPLVAGRAVKKLCSDPLN 68
           + QLL  +E SC  I+QFNQ+H+QLIV GLF HPL AGR +KKLC+   N
Sbjct: 53  NHQLLQKLELSCINIKQFNQIHTQLIVLGLFQHPLAAGRYIKKLCNTYFN 102


>F6HTB8_VITVI (tr|F6HTB8) Putative uncharacterized protein OS=Vitis vinifera
           GN=VIT_02s0012g00840 PE=4 SV=1
          Length = 594

 Score = 58.9 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 30/52 (57%), Positives = 36/52 (69%), Gaps = 2/52 (3%)

Query: 16  LKTHHQQLLLAVESCHG-IQQFNQVHSQLIVRGLFHHPLVAGRAVKKLCSDP 66
           LK  H  +L  +ESC G  ++FNQ+H+QLIV GL   PL AGRAVK LCS P
Sbjct: 55  LKLSHP-ILRTLESCCGSTKEFNQIHTQLIVSGLLQQPLAAGRAVKTLCSFP 105


>B9N2S4_POPTR (tr|B9N2S4) Predicted protein OS=Populus trichocarpa
           GN=POPTRDRAFT_580124 PE=4 SV=1
          Length = 617

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/49 (51%), Positives = 32/49 (65%)

Query: 16  LKTHHQQLLLAVESCHGIQQFNQVHSQLIVRGLFHHPLVAGRAVKKLCS 64
           L  +H  L    +SC  I+QFNQ+H+QL V GLF HP  A R +KKLC+
Sbjct: 54  LDLNHPILQKLEQSCTNIKQFNQIHTQLTVLGLFQHPFAASRYIKKLCA 102