Miyakogusa Predicted Gene

Lj0g3v0159479.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0159479.1 tr|G0Y6U9|G0Y6U9_ARAHY RNA-directed DNA
polymerase OS=Arachis hypogaea GN=303L13_19 PE=4
SV=1,41.79,0.00000002, ,CUFF.9883.1
         (70 letters)

Database: trembl 
           41,451,118 sequences; 13,208,986,710 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

G0Y6U9_ARAHY (tr|G0Y6U9) RNA-directed DNA polymerase OS=Arachis ...    63   3e-08
A4PSD7_MEDTR (tr|A4PSD7) RNA-directed DNA polymerase ; Ribonucle...    57   2e-06

>G0Y6U9_ARAHY (tr|G0Y6U9) RNA-directed DNA polymerase OS=Arachis hypogaea
           GN=303L13_19 PE=4 SV=1
          Length = 1613

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/67 (41%), Positives = 40/67 (59%)

Query: 1   MLIRCGRKQGARANRLFQFEAHWMDHPLYPEVVRRAWQQGELDVARALEEVRVDSLEFNK 60
           +L+RC  +   + NR F+F A W  HP Y ++V ++W  G   +   L EV+ +SLEFN 
Sbjct: 626 ILVRCKGRPQPKGNRPFRFIAAWATHPGYRDIVNQSWWSGNRGIHGKLSEVQKNSLEFNS 685

Query: 61  NFFGNIF 67
             FGNIF
Sbjct: 686 KVFGNIF 692


>A4PSD7_MEDTR (tr|A4PSD7) RNA-directed DNA polymerase ; Ribonuclease H, putative
           OS=Medicago truncatula GN=MtrDRAFT_AC140549g64v2 PE=4
           SV=1
          Length = 311

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/67 (41%), Positives = 40/67 (59%)

Query: 1   MLIRCGRKQGARANRLFQFEAHWMDHPLYPEVVRRAWQQGELDVARALEEVRVDSLEFNK 60
           +L+R G    +R +R F+FEA W+ H  Y  +V  AW       + AL +VR +S+ FNK
Sbjct: 191 ILLRFGGLPQSRGHRPFRFEAAWIGHVDYANLVSNAWNSSNHSTSVALNKVRENSIIFNK 250

Query: 61  NFFGNIF 67
           + FGNIF
Sbjct: 251 DVFGNIF 257