Miyakogusa Predicted Gene
- Lj0g3v0149999.3
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0149999.3 tr|F2CUH7|F2CUH7_HORVD DNA-directed RNA
polymerase OS=Hordeum vulgare var. distichum PE=2
SV=1,27.01,1e-17,beta and beta-prime subunits of DNA dependent
RNA-polymerase,NULL; DNA-DIRECTED RNA POLYMERASE,NULL;,CUFF.9209.3
(421 letters)
Database: trembl
41,451,118 sequences; 13,208,986,710 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
G7KER5_MEDTR (tr|G7KER5) DNA-directed RNA polymerase OS=Medicago... 555 e-155
K7LMQ8_SOYBN (tr|K7LMQ8) DNA-directed RNA polymerase OS=Glycine ... 540 e-151
K7K551_SOYBN (tr|K7K551) DNA-directed RNA polymerase OS=Glycine ... 536 e-150
I1JA29_SOYBN (tr|I1JA29) DNA-directed RNA polymerase OS=Glycine ... 536 e-150
A5BZZ3_VITVI (tr|A5BZZ3) DNA-directed RNA polymerase OS=Vitis vi... 393 e-107
B9RC12_RICCO (tr|B9RC12) DNA-directed RNA polymerase OS=Ricinus ... 382 e-103
B9GKP9_POPTR (tr|B9GKP9) DNA-directed RNA polymerase OS=Populus ... 378 e-102
F6HUI3_VITVI (tr|F6HUI3) DNA-directed RNA polymerase OS=Vitis vi... 375 e-101
M5WEG2_PRUPE (tr|M5WEG2) Uncharacterized protein OS=Prunus persi... 374 e-101
D7KU36_ARALL (tr|D7KU36) DNA-directed RNA polymerase OS=Arabidop... 310 8e-82
M4EFP9_BRARP (tr|M4EFP9) DNA-directed RNA polymerase OS=Brassica... 291 4e-76
J3M0K5_ORYBR (tr|J3M0K5) DNA-directed RNA polymerase OS=Oryza br... 263 7e-68
J3MZZ4_ORYBR (tr|J3MZZ4) DNA-directed RNA polymerase OS=Oryza br... 261 3e-67
R0HUP7_9BRAS (tr|R0HUP7) Uncharacterized protein OS=Capsella rub... 261 4e-67
C0JR66_MAIZE (tr|C0JR66) DNA-directed RNA polymerase OS=Zea mays... 249 1e-63
C0JR65_MAIZE (tr|C0JR65) DNA-directed RNA polymerase OS=Zea mays... 249 1e-63
C0JR68_MAIZE (tr|C0JR68) DNA-directed RNA polymerase OS=Zea mays... 245 2e-62
K3XDU8_SETIT (tr|K3XDU8) DNA-directed RNA polymerase OS=Setaria ... 243 1e-61
Q01JX0_ORYSA (tr|Q01JX0) DNA-directed RNA polymerase OS=Oryza sa... 242 2e-61
M0VV69_HORVD (tr|M0VV69) DNA-directed RNA polymerase OS=Hordeum ... 229 1e-57
M0VV71_HORVD (tr|M0VV71) DNA-directed RNA polymerase OS=Hordeum ... 229 1e-57
M0VV74_HORVD (tr|M0VV74) DNA-directed RNA polymerase OS=Hordeum ... 229 1e-57
M0VV76_HORVD (tr|M0VV76) DNA-directed RNA polymerase OS=Hordeum ... 229 2e-57
C5YE51_SORBI (tr|C5YE51) DNA-directed RNA polymerase OS=Sorghum ... 229 2e-57
M7ZUZ1_TRIUA (tr|M7ZUZ1) DNA-directed RNA polymerase D subunit 1... 213 2e-52
M8C5N9_AEGTA (tr|M8C5N9) DNA-directed RNA polymerase III subunit... 209 2e-51
C0JR69_MAIZE (tr|C0JR69) DNA-directed RNA polymerase OS=Zea mays... 199 1e-48
B8AT49_ORYSI (tr|B8AT49) DNA-directed RNA polymerase OS=Oryza sa... 180 8e-43
Q7XTZ3_ORYSJ (tr|Q7XTZ3) DNA-directed RNA polymerase OS=Oryza sa... 180 1e-42
B9FC30_ORYSJ (tr|B9FC30) DNA-directed RNA polymerase OS=Oryza sa... 179 2e-42
I1HLJ9_BRADI (tr|I1HLJ9) DNA-directed RNA polymerase OS=Brachypo... 173 1e-40
M0TPQ4_MUSAM (tr|M0TPQ4) DNA-directed RNA polymerase OS=Musa acu... 163 1e-37
M8BYW7_AEGTA (tr|M8BYW7) Uncharacterized protein OS=Aegilops tau... 146 1e-32
M0VV73_HORVD (tr|M0VV73) DNA-directed RNA polymerase OS=Hordeum ... 142 3e-31
M0VV68_HORVD (tr|M0VV68) DNA-directed RNA polymerase OS=Hordeum ... 142 3e-31
M0VV72_HORVD (tr|M0VV72) DNA-directed RNA polymerase OS=Hordeum ... 140 1e-30
M0VV75_HORVD (tr|M0VV75) DNA-directed RNA polymerase OS=Hordeum ... 140 1e-30
B9G500_ORYSJ (tr|B9G500) DNA-directed RNA polymerase OS=Oryza sa... 129 2e-27
B8BED0_ORYSI (tr|B8BED0) DNA-directed RNA polymerase OS=Oryza sa... 129 2e-27
K4CP21_SOLLC (tr|K4CP21) DNA-directed RNA polymerase OS=Solanum ... 119 2e-24
C0JR67_MAIZE (tr|C0JR67) DNA-directed RNA polymerase OS=Zea mays... 104 6e-20
F2CUH7_HORVD (tr|F2CUH7) DNA-directed RNA polymerase OS=Hordeum ... 97 8e-18
I1NVI7_ORYGL (tr|I1NVI7) DNA-directed RNA polymerase OS=Oryza gl... 89 3e-15
M0TPQ3_MUSAM (tr|M0TPQ3) DNA-directed RNA polymerase OS=Musa acu... 89 4e-15
J3L9M9_ORYBR (tr|J3L9M9) DNA-directed RNA polymerase OS=Oryza br... 86 3e-14
K3YP74_SETIT (tr|K3YP74) DNA-directed RNA polymerase OS=Setaria ... 85 4e-14
Q0E3V3_ORYSJ (tr|Q0E3V3) DNA-directed RNA polymerase (Fragment) ... 85 5e-14
I1NXC6_ORYGL (tr|I1NXC6) DNA-directed RNA polymerase OS=Oryza gl... 84 8e-14
M0WRB9_HORVD (tr|M0WRB9) DNA-directed RNA polymerase OS=Hordeum ... 84 8e-14
C5XJ93_SORBI (tr|C5XJ93) DNA-directed RNA polymerase (Fragment) ... 83 2e-13
B9F2S6_ORYSJ (tr|B9F2S6) DNA-directed RNA polymerase OS=Oryza sa... 82 3e-13
B9GWX9_POPTR (tr|B9GWX9) DNA-directed RNA polymerase OS=Populus ... 82 3e-13
I1IV91_BRADI (tr|I1IV91) DNA-directed RNA polymerase OS=Brachypo... 82 4e-13
B8AHU1_ORYSI (tr|B8AHU1) DNA-directed RNA polymerase OS=Oryza sa... 82 4e-13
M0VV70_HORVD (tr|M0VV70) DNA-directed RNA polymerase OS=Hordeum ... 82 4e-13
A8MAA2_CALMQ (tr|A8MAA2) DNA-directed RNA polymerase OS=Caldivir... 82 5e-13
Q1L5X6_SOLLC (tr|Q1L5X6) DNA-directed RNA polymerase (Fragment) ... 81 9e-13
K3Y4N1_SETIT (tr|K3Y4N1) DNA-directed RNA polymerase OS=Setaria ... 80 1e-12
F6I5R3_VITVI (tr|F6I5R3) DNA-directed RNA polymerase OS=Vitis vi... 79 3e-12
J3L864_ORYBR (tr|J3L864) DNA-directed RNA polymerase OS=Oryza br... 78 5e-12
B9RGA8_RICCO (tr|B9RGA8) DNA-directed RNA polymerase OS=Ricinus ... 78 8e-12
K7M0Q7_SOYBN (tr|K7M0Q7) DNA-directed RNA polymerase OS=Glycine ... 77 9e-12
Q1L5X5_ANTMA (tr|Q1L5X5) DNA-directed RNA polymerase (Fragment) ... 77 2e-11
K4B027_SOLLC (tr|K4B027) DNA-directed RNA polymerase OS=Solanum ... 77 2e-11
B9EWM0_ORYSJ (tr|B9EWM0) DNA-directed RNA polymerase OS=Oryza sa... 75 4e-11
Q5JJW0_ORYSJ (tr|Q5JJW0) DNA-directed RNA polymerase OS=Oryza sa... 75 5e-11
M0SC37_MUSAM (tr|M0SC37) DNA-directed RNA polymerase OS=Musa acu... 75 5e-11
H3FHF9_PRIPA (tr|H3FHF9) DNA-directed RNA polymerase OS=Pristion... 73 3e-10
M5XM01_PRUPE (tr|M5XM01) Uncharacterized protein OS=Prunus persi... 70 1e-09
K7MDF7_SOYBN (tr|K7MDF7) DNA-directed RNA polymerase OS=Glycine ... 69 4e-09
K7MDF9_SOYBN (tr|K7MDF9) DNA-directed RNA polymerase OS=Glycine ... 69 4e-09
K7MDF5_SOYBN (tr|K7MDF5) DNA-directed RNA polymerase OS=Glycine ... 69 4e-09
I1MIR6_SOYBN (tr|I1MIR6) DNA-directed RNA polymerase OS=Glycine ... 69 4e-09
R0FV63_9BRAS (tr|R0FV63) Uncharacterized protein OS=Capsella rub... 67 1e-08
D7LEE8_ARALL (tr|D7LEE8) DNA-directed RNA polymerase OS=Arabidop... 66 3e-08
M8BMS2_AEGTA (tr|M8BMS2) DNA-directed RNA polymerase II subunit ... 65 5e-08
C1EA31_MICSR (tr|C1EA31) DNA-directed RNA polymerase OS=Micromon... 62 4e-07
E9BN38_LEIDB (tr|E9BN38) DNA-directed RNA polymerase OS=Leishman... 62 6e-07
E3XD74_ANODA (tr|E3XD74) DNA-directed RNA polymerase OS=Anophele... 61 6e-07
E7A0J7_SPORE (tr|E7A0J7) DNA-directed RNA polymerase OS=Sporisor... 61 7e-07
D8RLP4_SELML (tr|D8RLP4) DNA-directed RNA polymerase OS=Selagine... 61 9e-07
A4HJP9_LEIBR (tr|A4HJP9) DNA-directed RNA polymerase OS=Leishman... 61 9e-07
D8RN79_SELML (tr|D8RN79) DNA-directed RNA polymerase OS=Selagine... 61 9e-07
A4I766_LEIIN (tr|A4I766) DNA-directed RNA polymerase OS=Leishman... 61 1e-06
E1F1V3_GIAIA (tr|E1F1V3) DNA-directed RNA polymerase OS=Giardia ... 60 1e-06
Q25312_LEIMA (tr|Q25312) DNA-directed RNA polymerase OS=Leishman... 60 2e-06
I2G101_USTH4 (tr|I2G101) DNA-directed RNA polymerase OS=Ustilago... 60 2e-06
A3LYS3_PICST (tr|A3LYS3) DNA-directed RNA polymerase OS=Scheffer... 59 3e-06
B9W974_CANDC (tr|B9W974) DNA-directed RNA polymerase OS=Candida ... 59 3e-06
Q59LW3_CANAL (tr|Q59LW3) DNA-directed RNA polymerase OS=Candida ... 59 3e-06
D6RMH4_COPC7 (tr|D6RMH4) DNA-directed RNA polymerase OS=Coprinop... 59 3e-06
H2B1A9_KAZAF (tr|H2B1A9) DNA-directed RNA polymerase OS=Kazachst... 59 4e-06
Q4Q600_LEIMA (tr|Q4Q600) DNA-directed RNA polymerase OS=Leishman... 59 5e-06
A8B4F1_GIAIC (tr|A8B4F1) DNA-directed RNA polymerase OS=Giardia ... 58 5e-06
>G7KER5_MEDTR (tr|G7KER5) DNA-directed RNA polymerase OS=Medicago truncatula
GN=MTR_5g011000 PE=3 SV=1
Length = 1687
Score = 555 bits (1431), Expect = e-155, Method: Compositional matrix adjust.
Identities = 286/458 (62%), Positives = 331/458 (72%), Gaps = 41/458 (8%)
Query: 5 LPSSMDDNDKFHEHNMPSGVITAIKFDVLTGEDI-------------------------- 38
LP+SMDD D H +PS +I AIKF+VLTGEDI
Sbjct: 114 LPNSMDDEDLATVHKVPSALIKAIKFEVLTGEDIVKYILVLISISTLQLFCVYQITVSLA 173
Query: 39 -------RTISALEIEAAGQVVCSDLGLPNSSEVCTTCGTNDKKLCEGHFGAIKFPFSIV 91
ISALEI A GQV CSDLGLPNSS CTTCG+ D+K CEGHFGAIKFPF+I+
Sbjct: 174 VELGQLHEKISALEINAPGQVTCSDLGLPNSSYGCTTCGSKDRKSCEGHFGAIKFPFTIL 233
Query: 92 HPYFISEAAEILNKICPACKSIRCDLLIKGVK-FLSVDKKLNDCKYCSGISMGRYPTMKF 150
HPYF++E AEIL KICPACKSIR ++ +K K L + + CKYC G MGRYP MKF
Sbjct: 234 HPYFMAEIAEILQKICPACKSIRQEIRVKRAKSLLGYNNQPKGCKYCCGNGMGRYPAMKF 293
Query: 151 RVSYNNLSRSPEIISEINDTA-SKKKTLGQRLAADYWDFIPNGSEEEESLVNRR-LSLSQ 208
RVS N+ R II E+ND + +KK+ LG+ L ADYWDFI ++EE+ VNR+ LS Q
Sbjct: 294 RVSSNDFFRRTAIIVEVNDISLNKKRNLGRGLPADYWDFILGDVQQEENHVNRKVLSPVQ 353
Query: 209 VHHLLSDVDPDFIEKYVPRKSLLDLNYFPVTPNGHRVTEFSHRPSNGPKLSFDDRTRACK 268
V +LLS VDP+FIEK++P L+ L+ F V PN HRVTE HR S G LSFD+RTRACK
Sbjct: 354 VENLLSGVDPNFIEKFIPSMDLVGLSCFLVAPNCHRVTEVPHRLSGGYPLSFDNRTRACK 413
Query: 269 KLVDFRGPAVELSSHVINSLSLSK-----LNPDKTPSNMFTELQQRKVGENACNSSGLRW 323
KLVDFRG A ELSS V++ L SK +NPD+TP N+FTELQQRKVGENACNSSGLRW
Sbjct: 414 KLVDFRGTANELSSRVLDCLRFSKASFSVINPDRTPVNIFTELQQRKVGENACNSSGLRW 473
Query: 324 MKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELR 383
MKDVVLGKRNDC+FRTVVVGDPDL LSEIG+PCQIAE+LQVS YVNR+N++NLL CCELR
Sbjct: 474 MKDVVLGKRNDCTFRTVVVGDPDLELSEIGIPCQIAEALQVSEYVNRQNRQNLLYCCELR 533
Query: 384 LLEKGHFKVCRKGRPVVLYKKKDLQIGDLLYRPLTDGD 421
LLEKG V R G PVVLYKK+DLQIGD+ YRPL DGD
Sbjct: 534 LLEKGQINVRRNGNPVVLYKKEDLQIGDIFYRPLVDGD 571
>K7LMQ8_SOYBN (tr|K7LMQ8) DNA-directed RNA polymerase OS=Glycine max PE=3 SV=1
Length = 1454
Score = 540 bits (1392), Expect = e-151, Method: Compositional matrix adjust.
Identities = 270/412 (65%), Positives = 318/412 (77%), Gaps = 11/412 (2%)
Query: 11 DNDKFHEHNMPSGVITAIKFDVLTGEDIRTISALEIEAAGQVVCSDLGLPNSSEVCTTCG 70
D+D F + PSGVI AIKFDVLT EDI I+ LEI AAGQV S LG PN+S+ C TCG
Sbjct: 2 DDDLFQRNKTPSGVIKAIKFDVLTEEDIENIAVLEINAAGQVTGSSLGFPNASDECATCG 61
Query: 71 TNDKKLCEGHFGAIKFPFSIVHPYFISEAAEILNKICPACKSIRCDLLIKGVKFLSVDKK 130
+ DK+ CEGHFG IKFP I+HPYF+SE A ILNKICP CKSIR KGV+ + K+
Sbjct: 62 SKDKRFCEGHFGVIKFPTPILHPYFMSEIAHILNKICPVCKSIRHK--SKGVRLIYGTKR 119
Query: 131 LNDCKYCSGISMGRYPTMKFRVSYNNLSRSPEIISEINDTASKKKTLGQRLAADYWDFIP 190
NDC YCS YP+MKFRVS N+L R II E+ + KKTLG + ADYW+FIP
Sbjct: 120 SNDCNYCSA-----YPSMKFRVSSNDLFRRTAIIVEVK---ASKKTLGTEIPADYWNFIP 171
Query: 191 NGSEEEESLVNRR-LSLSQVHHLLSDVDPDFIEKYVPRKSLLDLNYFPVTPNGHRVTEFS 249
+++EE+ VNRR LS +QV +LL+ VDPDFIEKY+PRK+LL LN FPVTPN HRVTE
Sbjct: 172 CDAQQEENYVNRRVLSPAQVLNLLNGVDPDFIEKYIPRKNLLYLNCFPVTPNCHRVTEVP 231
Query: 250 HRPSNGPKLSFDDRTRACKKLVDFRGPAVELSSHVINSLSLSKLNPDKTPSNMFTELQQR 309
+ S+G +LSFDDRTR+CKKLVDFRG ELSS V++ L +SKLNPDKTP+++F ++QQR
Sbjct: 232 YAISSGSRLSFDDRTRSCKKLVDFRGTPNELSSRVLDCLRISKLNPDKTPNSIFADIQQR 291
Query: 310 KVGENACNSSGLRWMKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVN 369
K+GENACNSSGLRW+KDVVLGKRND S RTVVVGDPDL LSE+G+PC IAESLQVS YVN
Sbjct: 292 KIGENACNSSGLRWIKDVVLGKRNDSSLRTVVVGDPDLELSEVGIPCHIAESLQVSEYVN 351
Query: 370 RENKKNLLDCCELRLLEKGHFKVCRKGRPVVLYKKKDLQIGDLLYRPLTDGD 421
R+N++ LL CCELRLLEKG VCR G V LYKK+DLQIGD +YRPL DGD
Sbjct: 352 RQNREKLLYCCELRLLEKGKIDVCRNGSKVHLYKKEDLQIGDKIYRPLADGD 403
>K7K551_SOYBN (tr|K7K551) DNA-directed RNA polymerase OS=Glycine max PE=3 SV=1
Length = 1454
Score = 536 bits (1380), Expect = e-150, Method: Compositional matrix adjust.
Identities = 271/412 (65%), Positives = 317/412 (76%), Gaps = 11/412 (2%)
Query: 11 DNDKFHEHNMPSGVITAIKFDVLTGEDIRTISALEIEAAGQVVCSDLGLPNSSEVCTTCG 70
D+D + PS VI AIKFDVLT EDI IS LEI AAGQV S+LGLPN+S+ C TCG
Sbjct: 2 DDDLLQRNKTPSVVIKAIKFDVLTEEDIENISVLEINAAGQVTGSNLGLPNASDECATCG 61
Query: 71 TNDKKLCEGHFGAIKFPFSIVHPYFISEAAEILNKICPACKSIRCDLLIKGVKFLSVDKK 130
T DKK CEGHFG IKFP I+HPYF+ E A ILNKICP CKSIR KG + + K+
Sbjct: 62 TKDKKFCEGHFGVIKFPTPILHPYFMLEIAHILNKICPVCKSIRHK--SKGARLIYGTKR 119
Query: 131 LNDCKYCSGISMGRYPTMKFRVSYNNLSRSPEIISEINDTASKKKTLGQRLAADYWDFIP 190
NDC YCS YP+M+FRVS N+L R II E+ + KKTLG + AD+W+FIP
Sbjct: 120 SNDCNYCS-----VYPSMQFRVSSNDLFRRTAIIVEVK---ASKKTLGTEIPADFWNFIP 171
Query: 191 NGSEEEESLVNRR-LSLSQVHHLLSDVDPDFIEKYVPRKSLLDLNYFPVTPNGHRVTEFS 249
+++EE+ VNRR LS QV++LL+DVDPDFIEKY+PRK+LL LN FPVTPN HRVTE
Sbjct: 172 CDAQQEENYVNRRVLSPVQVNYLLNDVDPDFIEKYIPRKNLLCLNCFPVTPNCHRVTEVP 231
Query: 250 HRPSNGPKLSFDDRTRACKKLVDFRGPAVELSSHVINSLSLSKLNPDKTPSNMFTELQQR 309
+ S+G +LSFDDRTR+CKKLVDFRG A ELSS V++ L +SKLNPDKTP+++F ++QQR
Sbjct: 232 YAISSGSRLSFDDRTRSCKKLVDFRGTANELSSRVLDCLRISKLNPDKTPNSIFADIQQR 291
Query: 310 KVGENACNSSGLRWMKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVN 369
K+GENA NSSGLRW+KDVVLGKRND SFRTVVVGDPDL LSEIG+PC IAESLQVS YVN
Sbjct: 292 KIGENAFNSSGLRWIKDVVLGKRNDSSFRTVVVGDPDLELSEIGIPCHIAESLQVSEYVN 351
Query: 370 RENKKNLLDCCELRLLEKGHFKVCRKGRPVVLYKKKDLQIGDLLYRPLTDGD 421
R+N++ LL CCEL LLEKG VCRKG V LYKK+DLQIGD YRPL DGD
Sbjct: 352 RQNREKLLYCCELHLLEKGKINVCRKGSIVHLYKKEDLQIGDKFYRPLADGD 403
>I1JA29_SOYBN (tr|I1JA29) DNA-directed RNA polymerase OS=Glycine max PE=3 SV=2
Length = 1457
Score = 536 bits (1380), Expect = e-150, Method: Compositional matrix adjust.
Identities = 271/412 (65%), Positives = 317/412 (76%), Gaps = 11/412 (2%)
Query: 11 DNDKFHEHNMPSGVITAIKFDVLTGEDIRTISALEIEAAGQVVCSDLGLPNSSEVCTTCG 70
D+D + PS VI AIKFDVLT EDI IS LEI AAGQV S+LGLPN+S+ C TCG
Sbjct: 2 DDDLLQRNKTPSVVIKAIKFDVLTEEDIENISVLEINAAGQVTGSNLGLPNASDECATCG 61
Query: 71 TNDKKLCEGHFGAIKFPFSIVHPYFISEAAEILNKICPACKSIRCDLLIKGVKFLSVDKK 130
T DKK CEGHFG IKFP I+HPYF+ E A ILNKICP CKSIR KG + + K+
Sbjct: 62 TKDKKFCEGHFGVIKFPTPILHPYFMLEIAHILNKICPVCKSIRHK--SKGARLIYGTKR 119
Query: 131 LNDCKYCSGISMGRYPTMKFRVSYNNLSRSPEIISEINDTASKKKTLGQRLAADYWDFIP 190
NDC YCS YP+M+FRVS N+L R II E+ + KKTLG + AD+W+FIP
Sbjct: 120 SNDCNYCS-----VYPSMQFRVSSNDLFRRTAIIVEVK---ASKKTLGTEIPADFWNFIP 171
Query: 191 NGSEEEESLVNRR-LSLSQVHHLLSDVDPDFIEKYVPRKSLLDLNYFPVTPNGHRVTEFS 249
+++EE+ VNRR LS QV++LL+DVDPDFIEKY+PRK+LL LN FPVTPN HRVTE
Sbjct: 172 CDAQQEENYVNRRVLSPVQVNYLLNDVDPDFIEKYIPRKNLLCLNCFPVTPNCHRVTEVP 231
Query: 250 HRPSNGPKLSFDDRTRACKKLVDFRGPAVELSSHVINSLSLSKLNPDKTPSNMFTELQQR 309
+ S+G +LSFDDRTR+CKKLVDFRG A ELSS V++ L +SKLNPDKTP+++F ++QQR
Sbjct: 232 YAISSGSRLSFDDRTRSCKKLVDFRGTANELSSRVLDCLRISKLNPDKTPNSIFADIQQR 291
Query: 310 KVGENACNSSGLRWMKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVN 369
K+GENA NSSGLRW+KDVVLGKRND SFRTVVVGDPDL LSEIG+PC IAESLQVS YVN
Sbjct: 292 KIGENAFNSSGLRWIKDVVLGKRNDSSFRTVVVGDPDLELSEIGIPCHIAESLQVSEYVN 351
Query: 370 RENKKNLLDCCELRLLEKGHFKVCRKGRPVVLYKKKDLQIGDLLYRPLTDGD 421
R+N++ LL CCEL LLEKG VCRKG V LYKK+DLQIGD YRPL DGD
Sbjct: 352 RQNREKLLYCCELHLLEKGKINVCRKGSIVHLYKKEDLQIGDKFYRPLADGD 403
>A5BZZ3_VITVI (tr|A5BZZ3) DNA-directed RNA polymerase OS=Vitis vinifera
GN=VITISV_011232 PE=3 SV=1
Length = 1393
Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust.
Identities = 208/417 (49%), Positives = 267/417 (64%), Gaps = 14/417 (3%)
Query: 11 DNDKFHEHNMPSGVITAIKFDVLTGEDIRTISALEIEAAGQVVCSDLGLPNSSEVCTTCG 70
DND E +PSG++ IKFDV T ED+ IS ++I+A ++ LG+PN S C+TCG
Sbjct: 2 DNDFLEEQQVPSGLLIGIKFDVSTEEDMEKISVMKIDAVNEITDPKLGVPNPSCQCSTCG 61
Query: 71 TNDKKLCEGHFGAIKFPFSIVHPYFISEAAEILNKICPACKSIRCDLLIKGVKFLSVDKK 130
D K CEGHFG IKFPF+I+HPYF++E +ILNKICP CKS R +KG S +
Sbjct: 62 AKDTKKCEGHFGVIKFPFTILHPYFLTEVVQILNKICPGCKSTRQGQWVKGADSGSRRLR 121
Query: 131 LNDCKYCSGISMGRYPTMKFRVSYNNLSRSPEIISEINDTASK---KKTLGQRLAADYWD 187
CKYC+ S YPTMKF+VS +L R II E+N+ K KK+ L DYWD
Sbjct: 122 SKGCKYCAANSNDWYPTMKFKVSSKDLFRKTAIIVEMNEKLPKKLQKKSFRPVLPLDYWD 181
Query: 188 FIPNGSEEEESLVN---RRLSLSQVHHLLSDVDPDFIEKYVPRKSLLDLNYFPVTPNGHR 244
FIP ++EE+ +N R LS +QVH+LL D+DP FI+++V R LN PVTPN HR
Sbjct: 182 FIPKDPQQEENCLNPNRRVLSHAQVHYLLKDIDPGFIKEFVSRMDSFFLNCLPVTPNNHR 241
Query: 245 VTEFSHRPSNGPKLSFDDRTRACKKLVDFRGPAVELSSHVINSLSLSKLNPDKTPSNMFT 304
VTE +H SNG L FD +RA KKLVDFRG A ELS V++ L SK SN+ +
Sbjct: 242 VTEITHALSNGQTLIFDQHSRAYKKLVDFRGTANELSCRVLDCLKTSK------ASNLRS 295
Query: 305 ELQQRKVGENACNSSGLRWMKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQV 364
E K ++A SGL+W+K+V+LGKR + SFR +VVGDP L LSEIG+PC IAE L +
Sbjct: 296 EKSTSK--DSASKMSGLKWIKEVLLGKRTNHSFRMIVVGDPKLRLSEIGIPCHIAEELLI 353
Query: 365 SVYVNRENKKNLLDCCELRLLEKGHFKVCRKGRPVVLYKKKDLQIGDLLYRPLTDGD 421
S ++N N + + + C LRLLEKG V RKG + + D Q GD++YRPLTDGD
Sbjct: 354 SEHLNSWNWEKVTNGCNLRLLEKGQTYVRRKGTLAPVRRMNDFQAGDIIYRPLTDGD 410
>B9RC12_RICCO (tr|B9RC12) DNA-directed RNA polymerase OS=Ricinus communis
GN=RCOM_1683300 PE=3 SV=1
Length = 1475
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 204/418 (48%), Positives = 277/418 (66%), Gaps = 13/418 (3%)
Query: 11 DNDKFHE-HNMPSGVITAIKFDVLTGEDIRTISALEIEAAGQVVCSDLGLPNSSEVCTTC 69
+ D F E +PS ++TAI F V T + +S L I+ +V S LGLPN + C+TC
Sbjct: 2 EADLFEERQQLPSALLTAITFGVSTEAEKEKLSVLTIDTVSEVTDSKLGLPNPTNQCSTC 61
Query: 70 GTNDKKLCEGHFGAIKFPFSIVHPYFISEAAEILNKICPACKSIRCDLLIKGVKFLSVDK 129
G+ D K CEGHFG IKFPF+I+HPY++SE ILN++CP CKSIR + ++ + L+
Sbjct: 62 GSKDLKSCEGHFGVIKFPFTILHPYYLSEVVRILNQVCPKCKSIRKESKVRCLNHLNPKL 121
Query: 130 KLNDCKYCSGISMGRYPTMKFRVSYNNLSRSPEIISEIND---TASKKKTLGQRLAADYW 186
+ C YP MKF VS + R II++ ++ S+K+ ++LAADYW
Sbjct: 122 PVLLILLC------WYPAMKFSVSSEEIFRKNVIIAKFSERPTNKSQKRGFKKKLAADYW 175
Query: 187 DFIPNGSEEEESLV---NRRLSLSQVHHLLSDVDPDFIEKYVPRKSLLDLNYFPVTPNGH 243
D IP ++EE++ R LS +QV HLL ++DP+FI K+V ++ + LN F VTPN H
Sbjct: 176 DIIPKDEQQEENITRPNQRVLSHAQVIHLLENIDPNFIRKFVLKRDSIFLNCFSVTPNCH 235
Query: 244 RVTEFSHRPSNGPKLSFDDRTRACKKLVDFRGPAVELSSHVINSLSLSKLNPDKTPSNMF 303
RVTE +H SNG +L FDDRTRA KK+VDFRG A ELS V++ L SK+NPDK+ +N
Sbjct: 236 RVTEVTHAFSNGQRLVFDDRTRAYKKMVDFRGIAKELSFRVLDCLKTSKINPDKSVNNDD 295
Query: 304 TELQQRKVGENACNSSGLRWMKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQ 363
QRK+ +++ +SSGLRW+KDVVLGKRND SFR VVVGDP++ SEIG+PC IAE LQ
Sbjct: 296 YMALQRKMNDSSSSSSGLRWIKDVVLGKRNDNSFRMVVVGDPNIKFSEIGIPCPIAERLQ 355
Query: 364 VSVYVNRENKKNLLDCCELRLLEKGHFKVCRKGRPVVLYKKKDLQIGDLLYRPLTDGD 421
+S ++ N L CCE+RLLEKG V R+G+ V + + K+L+IGD++YRPL DGD
Sbjct: 356 ISEHLTTWNWDKLNTCCEVRLLEKGDMHVRREGKLVRVRRTKELRIGDIIYRPLNDGD 413
>B9GKP9_POPTR (tr|B9GKP9) DNA-directed RNA polymerase OS=Populus trichocarpa
GN=NRPD901 PE=3 SV=1
Length = 1517
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 212/442 (47%), Positives = 268/442 (60%), Gaps = 40/442 (9%)
Query: 17 EHNMPSGVITAIKFDVLTGEDIRTISALEIEAAGQVVCSDLGLPNSSEVCTTCGTNDKKL 76
E +PS +IT + F VLT + +S L I+A +V LGLPN S C+TCG+ D K
Sbjct: 8 EQQVPSALITGMAFGVLTEAETEKLSVLNIDAVSEVTDPKLGLPNPSSQCSTCGSRDLKS 67
Query: 77 CEG-----------------------------HFGAIKFPFSIVHPYFISEAAEILNKIC 107
CEG HFG I FP++IVHPYF+SE +ILNKIC
Sbjct: 68 CEGIVDVDLNSADRLASIATGDCANILLSLSGHFGVINFPYTIVHPYFLSEVVQILNKIC 127
Query: 108 PACKSIRCDLLIKGVKFLSVDK-KLNDCKYCSGISMGRYPTMKFRVSYNNLSRSPEIISE 166
P CKSIR L K + ++ + + CKYC+G S+G YP MKF+VS + R II+E
Sbjct: 128 PGCKSIR---LAKATELITKENPQRKGCKYCAGNSLGWYPPMKFKVSSKEIFRKTAIIAE 184
Query: 167 INDTASKK--KTLGQRLAADYWDFIPNGSEEEESLVN-----RRLSLSQVHHLLSDVDPD 219
I +T SKK K + LAADYWD P +EEE N R LS SQV H+L DVDP+
Sbjct: 185 IRETLSKKPQKGFKKILAADYWDIFPKDEQEEEEETNAKPNRRVLSHSQVRHMLKDVDPN 244
Query: 220 FIEKYVPRKSLLDLNYFPVTPNGHRVTEFSHRPSNGPKLSFDDRTRACKKLVDFRGPAVE 279
FI+ + + + LN FPVTPN HRVTE +H SNG +L FD+RTRA KK+VDFRG A
Sbjct: 245 FIKLSILKTDTIFLNCFPVTPNSHRVTEVTHAFSNGQRLIFDERTRAYKKMVDFRGVANT 304
Query: 280 LSSHVINSLSLSKLNPDKTPSNMFTELQQRKVGENACNSSGLRWMKDVVLGKRNDCSFRT 339
LS HV++ L SKLNPDK+ + Q +K + N+SGLRW+KDVVLGKRND SFR
Sbjct: 305 LSFHVMDCLKTSKLNPDKSGNIDPWTAQPKKSNDYVNNASGLRWIKDVVLGKRNDHSFRM 364
Query: 340 VVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEKGHFKVCRKGRPV 399
V+VGDP L L EIG+PC IAE LQ+S + N + L C E EKG V R+G V
Sbjct: 365 VIVGDPHLQLHEIGIPCHIAERLQISESLTAWNWEKLNACFEKSRFEKGDMHVRREGNLV 424
Query: 400 VLYKKKDLQIGDLLYRPLTDGD 421
+ K+L++GD++YRPL DGD
Sbjct: 425 RVRHMKELRLGDIIYRPLNDGD 446
>F6HUI3_VITVI (tr|F6HUI3) DNA-directed RNA polymerase OS=Vitis vinifera
GN=VIT_02s0025g04530 PE=3 SV=1
Length = 1433
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 200/417 (47%), Positives = 254/417 (60%), Gaps = 41/417 (9%)
Query: 11 DNDKFHEHNMPSGVITAIKFDVLTGEDIRTISALEIEAAGQVVCSDLGLPNSSEVCTTCG 70
DND E +PSG++ IKFDV T ED+ IS ++I+A ++ LG+PN S C+TCG
Sbjct: 2 DNDFLEEQQVPSGLLIGIKFDVSTEEDMEKISVMKIDAVNEITDPKLGVPNPSCQCSTCG 61
Query: 71 TNDKKLCEGHFGAIKFPFSIVHPYFISEAAEILNKICPACKSIRCDLLIKGVKFLSVDKK 130
D K CEGHFG IKFPF+I+HPYF++E +ILNKICP CKS R +K + S
Sbjct: 62 AKDTKKCEGHFGVIKFPFTILHPYFLTEVVQILNKICPGCKSTRQGQWVKVRRLRS---- 117
Query: 131 LNDCKYCSGISMGRYPTMKFRVSYNNLSRSPEIISEINDTASK---KKTLGQRLAADYWD 187
CKYC+ S YPTMKF+VS +L R II E+N+ K KK+ L DYWD
Sbjct: 118 -KGCKYCAANSNDWYPTMKFKVSSKDLFRKTAIIVEMNEKLPKKLQKKSFRPVLPLDYWD 176
Query: 188 FIPNGSEEEESLVN---RRLSLSQVHHLLSDVDPDFIEKYVPRKSLLDLNYFPVTPNGHR 244
FIP ++EE+ +N R LS +QVH+LL D+DP FI+++V R LN PVTPN HR
Sbjct: 177 FIPKDPQQEENCLNPNRRVLSHAQVHYLLKDIDPGFIKEFVSRMDSFFLNCLPVTPNNHR 236
Query: 245 VTEFSHRPSNGPKLSFDDRTRACKKLVDFRGPAVELSSHVINSLSLSKLNPDKTPSNMFT 304
VTE +H SNG L FD +RA KKLVDFRG A ELS H
Sbjct: 237 VTEITHALSNGQTLIFDQHSRAYKKLVDFRGTANELSCH--------------------- 275
Query: 305 ELQQRKVGENACNSSGLRWMKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQV 364
+A SGL+W+K+V+LGKR + SFR +VVGDP L LSEIG+PC IAE L +
Sbjct: 276 ---------SASKMSGLKWIKEVLLGKRTNHSFRMIVVGDPKLRLSEIGIPCHIAEELLI 326
Query: 365 SVYVNRENKKNLLDCCELRLLEKGHFKVCRKGRPVVLYKKKDLQIGDLLYRPLTDGD 421
S ++N N + + + C LRLLEKG V RKG + + D Q GD++YRPLTDGD
Sbjct: 327 SEHLNSWNWEKVTNGCNLRLLEKGQTYVRRKGTLAPVRRMNDFQAGDIIYRPLTDGD 383
>M5WEG2_PRUPE (tr|M5WEG2) Uncharacterized protein OS=Prunus persica
GN=PRUPE_ppa000278mg PE=4 SV=1
Length = 1356
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 207/421 (49%), Positives = 260/421 (61%), Gaps = 51/421 (12%)
Query: 11 DNDKFHEHNMPSGVITAIKFDVLTGEDIRTISALEIEAAGQVVCSDLGLPNSSEVCTTCG 70
DN+ + E +PSG+IT I +V T EDI IS +I+A +V LGLPN S C+TCG
Sbjct: 2 DNELYEEEGVPSGLITGIHLNVSTQEDIENISVKQIDAVTEVTDPKLGLPNPSFQCSTCG 61
Query: 71 TNDKKLCEGHFGAIKFPFSIVHPYFISEAAEILNKICPACKSIRCDL-------LIKGVK 123
K CEGHFG IKFP +I+HPY++SE +ILNKICP CKSIR +L ++G
Sbjct: 62 AEKLKCCEGHFGDIKFPCTILHPYYLSEVTQILNKICPGCKSIRQNLRAKVSNRTLRGAG 121
Query: 124 FLSVDKKLNDCKYCSGISMGRYPTMKFRVSYNNLSRSPEIISEINDTASKKKTLGQRLAA 183
+ +KL CKYC G S+ YP MKF+VS L + II+E N L A
Sbjct: 122 SVIGHRKLKGCKYCIGSSIN-YPRMKFKVSTRELFKRSAIIAEANGI----------LPA 170
Query: 184 DYWDFIPNGSEEEESLV---NRRLSLSQVHHLLSDVDPDFIEKYVPRKSLLDLNYFPVTP 240
DYWDFIP ++++ES + R LS +QVH+LL DVD FIEK VP+ + L + F VTP
Sbjct: 171 DYWDFIPKDAQQDESCMKPNKRVLSHAQVHYLLKDVDTKFIEKIVPKTNSLSMGSFLVTP 230
Query: 241 NGHRVTEFSHRPSNGPKLSFDDRTRACKKLVDFRGPAVELSSHVINSLSLSKLNPDKTPS 300
N HRVTE H SNG +L FD+RTRA +KLVDF+G A EL SH +P KT
Sbjct: 231 NCHRVTEVMHSFSNGQRLMFDERTRAYRKLVDFKGVANELGSH----------DPSKT-- 278
Query: 301 NMFTELQQRKVGENACNSSGLRWMKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAE 360
SGLRW+KDVVLGKR+D FRTVVVGDP++ LSEIG+PCQIAE
Sbjct: 279 ------------------SGLRWIKDVVLGKRSDHCFRTVVVGDPNIKLSEIGIPCQIAE 320
Query: 361 SLQVSVYVNRENKKNLLDCCELRLLEKGHFKVCRKGRPVVLYKKKDLQIGDLLYRPLTDG 420
LQ+S +NR N + L C LRL+ KG V RKG V + + +LQ+GD +YRPL+DG
Sbjct: 321 RLQISENLNRWNIEKLDASCNLRLMVKGEMHVRRKGSLVWVRQTDELQMGDTIYRPLSDG 380
Query: 421 D 421
D
Sbjct: 381 D 381
>D7KU36_ARALL (tr|D7KU36) DNA-directed RNA polymerase OS=Arabidopsis lyrata
subsp. lyrata GN=ARALYDRAFT_893170 PE=3 SV=1
Length = 1456
Score = 310 bits (793), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 180/418 (43%), Positives = 248/418 (59%), Gaps = 24/418 (5%)
Query: 13 DKFHEHNMPSGVITAIKFDVLTGEDIRTISALEIEAAGQVVCSDLGLPNSSEVCTTCGTN 72
D E +P G +T+I F + D T+S +++EA QV S LGLPN +C TCG+
Sbjct: 3 DDCEELQVPVGTLTSIGFSISNNTDRDTMSVIKVEAPNQVTDSRLGLPNPDSICKTCGSK 62
Query: 73 DKKLCEGHFGAIKFPFSIVHPYFISEAAEILNKICPACKSIRCDLLIKGVKFLSVDKKLN 132
D+K+CEGHFG I F +SI++PYF+ E A +LNKICP CK IR +F + +
Sbjct: 63 DRKVCEGHFGVINFQYSIINPYFLKEIAALLNKICPGCKYIRKK------QFQITEDQPE 116
Query: 133 DCKYCSGISMGRYPTMKFRVSYNNLSRSPEIISEINDTASKKKTLGQR----LAADYWDF 188
C+YC+ S YP MKFRV+ + R I+ E+N+ + K L +R L DYW F
Sbjct: 117 RCRYCT--SNTGYPLMKFRVTTKEVFRRSGIVVEVNEESLMK--LKKRGVLALPPDYWSF 172
Query: 189 IPNGSEEEESLVN---RRLSLSQVHHLLSDVDPDFIEKYVPRKSLLDLNYFPVTPNGHRV 245
+P S +ES + R L+ +QV+ LLS +D I+K +P L L FPVTPNG+RV
Sbjct: 173 VPQDSNIDESCLKPTRRILTHAQVYALLSGIDQRLIKKDIPMFDSLALTSFPVTPNGYRV 232
Query: 246 TEFSHRPSNGPKLSFDDRTRACKKLVDFRGPAVELSSHVINSLSLSKLNPDKTPSNMFTE 305
TE H+ NG +L FD+RTR +KLV F G +ELSS VI + S+L + S+ +
Sbjct: 233 TEIVHQ-FNGARLVFDERTRIYRKLVGFEGNTLELSSRVIECMQYSRLFSENVSSSQDSA 291
Query: 306 --LQQRKVGENACNSSGLRWMKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQ 363
Q++ C GLR+MKDV+LGKR+D +FRTVVVGDP L L EIG+P +IA+ LQ
Sbjct: 292 NPYQKKSDTPKLC---GLRFMKDVLLGKRSDHTFRTVVVGDPSLKLHEIGIPERIAKRLQ 348
Query: 364 VSVYVNRENKKNLLDCCELRLLEKGHFKVCRKGRPVVLYKKKDLQIGDLLYRPLTDGD 421
VS ++N N + L+ C L + V R+G +V + DLQ GD ++R L DGD
Sbjct: 349 VSEHLNNWNNERLVTFCSPNLFDNKEVHV-RRGDRLVAIRVSDLQTGDKIFRNLMDGD 405
>M4EFP9_BRARP (tr|M4EFP9) DNA-directed RNA polymerase OS=Brassica rapa subsp.
pekinensis GN=Bra027611 PE=3 SV=1
Length = 1443
Score = 291 bits (744), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 174/415 (41%), Positives = 237/415 (57%), Gaps = 28/415 (6%)
Query: 13 DKFHEHNMPSGVITAIKFDVLTGEDIRTISALEIEAAGQVVCSDLGLPNSSEVCTTCGTN 72
+K E +P G + +I F + +D + +S +E+EAA QV S LGLPN ++C +CG+
Sbjct: 3 EKCEELEVPMGTLKSISFSISNNKDRKNMSVMEVEAANQVTDSRLGLPNRDDICKSCGSK 62
Query: 73 DKKLCEGHFGAIKFPFSIVHPYFISEAAEILNKICPACKSIRCDLLIKGVKFLSVDKKLN 132
D+K+CEGHFG I + +++P+ + E A +LNK CP CK + KK +
Sbjct: 63 DRKVCEGHFGVINLRYPVINPHLLKEVATLLNKFCPGCKYTK--------------KKQS 108
Query: 133 DCKYCSGISMGRYPTMKFRVSYNNLSRSPEIISEIN-DTASKKKTLG-QRLAADYWDFIP 190
+ S YP MKFRV+ R I+ E++ D K G L DYWDF+P
Sbjct: 109 QSQ-----SNTDYPLMKFRVTTKEAFRRSGIVCEVSEDNVLKLSKRGLSALPPDYWDFMP 163
Query: 191 NGSEEEESLVN---RRLSLSQVHHLLSDVDPDFIEKYVPRKSLLDLNYFPVTPNGHRVTE 247
+ES + R L+ +QV+ LLS +D I K +P L L FPVTPNGHRV+E
Sbjct: 164 KDPNIDESCLKPSRRILTHAQVYALLSGIDERVIRKEIPMFDSLPLASFPVTPNGHRVSE 223
Query: 248 FSHRPSNGPKLSFDDRTRACKKLVDFRGPAVELSSHVINSLSLSKL-NPDKTPSNMFTEL 306
+ + GP+L FD+RTR KKLV F G +ELSS V+ + S+L + + +PS
Sbjct: 224 MVTQFT-GPRLVFDERTRIYKKLVGFEGNGLELSSRVMECMQYSRLFSENVSPSQESANP 282
Query: 307 QQRKVGENACNSSGLRWMKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSV 366
Q+K + GLR+MKDV+LGKR+D +FRTVVVGDP L L+EIG+P IAE LQVS
Sbjct: 283 YQKK--SDTPELRGLRFMKDVLLGKRSDHTFRTVVVGDPSLKLNEIGIPRSIAERLQVSE 340
Query: 367 YVNRENKKNLLDCCELRLLEKGHFKVCRKGRPVVLYKKKDLQIGDLLYRPLTDGD 421
+N N+ L+ C +LLEKG V R GR V + DLQ GD R L DGD
Sbjct: 341 NLNDWNRDRLVTSCFHKLLEKGETHVRRGGRLVGIRAIDDLQTGDSFLRTLKDGD 395
>J3M0K5_ORYBR (tr|J3M0K5) DNA-directed RNA polymerase OS=Oryza brachyantha
GN=OB04G29300 PE=3 SV=1
Length = 1474
Score = 263 bits (673), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 154/429 (35%), Positives = 242/429 (56%), Gaps = 30/429 (6%)
Query: 17 EHNMPSGVITAIKFDVLTGEDIRTISALEIEAAGQVVCSDLGLPNSSEVCTTCGTNDKKL 76
E NMP + AIKF ++T D+ +S+ I V + LGLPN + C TCG+ +
Sbjct: 15 EVNMPVAELIAIKFSLMTSSDMEKLSSASIIEMCDVTNAKLGLPNGAPQCATCGSQSVRD 74
Query: 77 CEGHFGAIKFPFSIVHPYFISEAAEILNKICPACKSIRCDLLIKGVKFLSVDKKLNDCKY 136
C+GHFG IK ++ +PYFI E +LN+ICP C +++ + +K +++ CKY
Sbjct: 75 CDGHFGVIKLAATVHNPYFIEEVVHLLNQICPGCLTLKQNGDMKRADGITIQAT---CKY 131
Query: 137 CSGISMGRYPTMKFR--------VSYNNLSRSPEII---SEINDTASK-----KKTLGQR 180
CS YP++ F+ +S + L R+ +I S I + AS+ K +
Sbjct: 132 CSKDGAKLYPSIIFKMLTSPRVTLSRSKLHRNTSVIDKMSIIAEVASRVTHNSKNKAPET 191
Query: 181 LAADYWDFIPNGSEEEESLVNRR-LSLSQVHHLLSDVDPDFIEKYVPRKSLLDLNYFPVT 239
L D+WDFIP+ ++ +S V ++ LS QV H+L +DP+ I PR+ LL L+ PVT
Sbjct: 192 LPHDFWDFIPDENQPSQSNVTKKILSPYQVFHMLKKLDPELISHVTPRRELLFLSCLPVT 251
Query: 240 PNGHRVTEFSHRPSNGPKLSFDDRTRACKKLVDFRGPAVELSSH-----VINSLSLSKLN 294
PN HRV E + S+GP+L+FDDRT+A K++VD + H +S+ S++
Sbjct: 252 PNCHRVAEMPYGHSDGPRLAFDDRTKAYKRMVDVSRRIDDYRQHPQFGVFASSVVTSRVM 311
Query: 295 PDKTPSNMFTELQQRKVGENACNSS--GLRWMKDVVLGKRNDCSFRTVVVGDPDLALSEI 352
S ++ ++ GE++ ++ G +W+KD++L KR+D +FR+++VGDP ++L+EI
Sbjct: 312 ECMKSSKLYA---KKSDGESSTSTDTYGTKWLKDIILSKRSDNAFRSIMVGDPKISLNEI 368
Query: 353 GVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEKGHFKVCRKGRPVVLYKKKDLQIGDL 412
G+P +A +L VS V+ N + + C L LL K V R G+ + + K LQIGD+
Sbjct: 369 GIPMDLALNLVVSEQVSYYNFETINLKCNLHLLTKEVLLVRRNGKLIFVRKANKLQIGDI 428
Query: 413 LYRPLTDGD 421
YR L DGD
Sbjct: 429 AYRLLQDGD 437
>J3MZZ4_ORYBR (tr|J3MZZ4) DNA-directed RNA polymerase OS=Oryza brachyantha
GN=OB09G25730 PE=3 SV=1
Length = 1779
Score = 261 bits (667), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 156/437 (35%), Positives = 240/437 (54%), Gaps = 43/437 (9%)
Query: 17 EHNMPSGVITAIKFDVLTGEDIRTISALEIEAAGQVVCSDLGLPNSSEVCTTCGTNDKKL 76
E MP + AIKF ++T D+ S++ I V + LGLPN + C TCG + +
Sbjct: 317 EVKMPEAKLNAIKFSLMTSSDMEKFSSVSIIEMRDVTNAKLGLPNGAPQCATCGFRNIRD 376
Query: 77 CEGHFGAIKFPFSIVHPYFISEAAEILNKICPACKSIRCDLLIKGVKFLSVDKKLNDCKY 136
C+GHFG IK ++ +PYFI E ++LN+ICP C +++ + K K + CKY
Sbjct: 377 CDGHFGVIKLAATVHNPYFIEEVVQLLNQICPGCLTLKQNGETKLKKGDGTTIQAT-CKY 435
Query: 137 CSGISMGRYPTMKFRV--------SYNNLSRSPEIISEINDTA---------SKKKTLGQ 179
CS YP++ F++ S + L R+ ++ +++ A SK K +
Sbjct: 436 CSKDGAKLYPSIIFKMLTSPRVTLSRSKLHRNTSVMDKMSIIAEVASRVTHKSKNKVPHE 495
Query: 180 RLAADYWDFIPNGSEEEESLVNRR-LSLSQVHHLLSDVDPDFIEKYVPRKSLLDLNYFPV 238
L D+WDF+P+ ++ +S V ++ LS QV H+L +DP+ I + PR+ LL L+ PV
Sbjct: 496 ILPQDFWDFLPDDNQPPQSNVTKKILSPYQVFHMLKKIDPELINQVTPRRELLFLSCLPV 555
Query: 239 TPNGHRVTEFSHRPSNGPKLSFDDRTRACKKLVD-------FRG-------PAVELSSHV 284
TPN HRV E + S+GP+L+FDDRT+A K++VD +R + ++S V
Sbjct: 556 TPNCHRVVEMPYGHSDGPRLAFDDRTKAYKRMVDVSRRIDDYRQHPQFGVYASSAVTSRV 615
Query: 285 INSLSLSKLNPDKTPSNMFTELQQRKVGENACNSSGLRWMKDVVLGKRNDCSFRTVVVGD 344
+ L SKL K+ T + ++ G +W+KD++L KR+D +FR+V+VGD
Sbjct: 616 MECLKSSKLYSRKSDGESST----------STDTYGTKWLKDIILSKRSDNAFRSVMVGD 665
Query: 345 PDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEKGHFKVCRKGRPVVLYKK 404
P + L+EIG+P +A +L VS V+ N + + C L LL K V R GR + + K
Sbjct: 666 PKINLNEIGMPMDLALNLVVSEQVSSYNFETINLKCNLHLLTKEVLLVRRNGRLIFIRKA 725
Query: 405 KDLQIGDLLYRPLTDGD 421
L+IGD+ YRPL DGD
Sbjct: 726 NKLEIGDIAYRPLQDGD 742
>R0HUP7_9BRAS (tr|R0HUP7) Uncharacterized protein OS=Capsella rubella
GN=CARUB_v10019657mg PE=4 SV=1
Length = 1459
Score = 261 bits (667), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 164/423 (38%), Positives = 230/423 (54%), Gaps = 54/423 (12%)
Query: 41 ISALEIEAAGQVVCSDLGLPNSSEVCTTCGTNDKKLCEG--------------------- 79
++ L+IE+A V S LGLPN +C TCG+ D+K+CEG
Sbjct: 1 MAVLKIESANMVTDSRLGLPNPDAICRTCGSKDRKVCEGIIKIEKFLANMVASRGSFMIS 60
Query: 80 ------------HFGAIKFPFSIVHPYFISEAAEILNKICPACKSIRCDLLIKGVKFLSV 127
HFG + F ++I++PYF+ E A +LNKICP CK IK +F
Sbjct: 61 SPEYASFVSCLGHFGVVNFQYAIINPYFLKEIAALLNKICPGCK------YIKKKQFQIN 114
Query: 128 DKKLNDCKYCSGISMGRYPTMKFRVSYNNLSRSPEIISEINDTA--SKKKTLGQRLAADY 185
++ + C+YC+ + YP +KFRV+ + R I+ E+N+ + KK + L DY
Sbjct: 115 GEQPHRCRYCT--TNTSYPPVKFRVTTKEVFRRSGIVVEVNEESLIKLKKQGTKTLPLDY 172
Query: 186 WDFIPNGSEEEESLVN---RRLSLSQVHHLLSDVDPDFIEKYVPRKSLLDLNYFPVTPNG 242
W F+P S +ES + R L+ +QV+ LL +D I+K +P L L FPVTPNG
Sbjct: 173 WSFVPKDSNIDESCLKETKRILTHAQVYALLYGIDERLIKKDIPMFDSLSLASFPVTPNG 232
Query: 243 HRVTEFSHRPSNGPKLSFDDRTRACKKLVDFRGPAVELSSHVINSLSLSKLNPDKTPSNM 302
+RVTE H+ SNG +L FD+RTR K+LV F G +ELSS V+ + S+L + S+
Sbjct: 233 YRVTEIVHQ-SNGARLVFDERTRIYKRLVGFEGNTLELSSRVVECMQYSRLFSETVSSSQ 291
Query: 303 FTE--LQQRKVGENACNSSGLRWMKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAE 360
+ Q++ C GLR+MKDV+LGKR+D +FR +VVGDP L L EIG+P IAE
Sbjct: 292 DSANPYQKKPDTPKLC---GLRFMKDVLLGKRSDHTFRAIVVGDPALKLHEIGIPQTIAE 348
Query: 361 SLQVSVYVNRENKKNL--LDCCELRLLEKGHFKVCRKGRPVVLYKKKDLQIGDLLYRPLT 418
+QVS +N N + L +L L K V R V + + KDLQ GD + R L
Sbjct: 349 RIQVSEILNDWNMERLSAFVLHKLIALRKREVHVRRGDSLVAIRQIKDLQTGDKISRTLM 408
Query: 419 DGD 421
DGD
Sbjct: 409 DGD 411
>C0JR66_MAIZE (tr|C0JR66) DNA-directed RNA polymerase OS=Zea mays PE=2 SV=1
Length = 871
Score = 249 bits (637), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 151/424 (35%), Positives = 237/424 (55%), Gaps = 30/424 (7%)
Query: 21 PSGVITAIKFDVLTGEDIRTISALEIEAAGQVVCSDLGLPNSSEVCTTCGTNDKKLCEGH 80
P ++ AIKFD++T D+ +S++ I V LGLPN S C TCG+ + C+GH
Sbjct: 8 PEAILNAIKFDLMTSTDMEKLSSMSIIEVSDVTSPKLGLPNGSLQCETCGSQRGRDCDGH 67
Query: 81 FGAIKFPFSIVHPYFISEAAEILNKICPACKSIRCDLLIKGVKFLSVDKKLNDCKYCSGI 140
FG K ++ +PYFI + LN+ICP C S R + K L +K CKYCS
Sbjct: 68 FGVTKLAATVHNPYFIDDVVHFLNRICPGCLSPREGI---DTKRLEREKVQATCKYCSKD 124
Query: 141 SMGRYPTMKFR--------VSYNNLSRSPEIISEINDTA---------SKKKTLGQRLAA 183
YP++ F+ + + L R+ ++ I+ A SK K + L
Sbjct: 125 GSKLYPSIVFKTLSSPRVLLFKSKLHRNASVMERISIVAEAADRMPNRSKGKGSLEGLPL 184
Query: 184 DYWDFIPNGSEEEESLVNRR-LSLSQVHHLLSDVDPDFIEKYVPRKSLLDLNYFPVTPNG 242
D+WDF+P+ +++ +S + + LS QV ++L DP+ I+++V R+ LL L+ PVTPN
Sbjct: 185 DFWDFVPSENKQVQSNMTKIILSPYQVFYMLKKSDPELIKQFVSRRELLFLSCLPVTPNC 244
Query: 243 HRVTEFSHRPSNGPKLSFDDRTRACKKLVDFRGPAVELSSH-----VINSLSLSKLNPDK 297
HRV E + +G +L+FDDRT+A K++VD + H + +SL S+++
Sbjct: 245 HRVVEIGYGLPDG-RLTFDDRTKAYKRMVDVSRRIDDYRQHPHFSVLASSLVSSRVSECL 303
Query: 298 TPSNMFTELQQRKVGENACNSSGLRWMKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQ 357
S +++ ++ GE + ++ G++W+KDVVL KR+D FR+++VGDP + L EIG+P
Sbjct: 304 KSSKLYS---KKADGETSTDTYGMKWLKDVVLSKRSDNVFRSIMVGDPKIKLWEIGIPED 360
Query: 358 IAESLQVSVYVNRENKKNLLDCCELRLLEKGHFKVCRKGRPVVLYKKKDLQIGDLLYRPL 417
++ SL VS +V+ N ++ C L LL K + R G+ + L K L+IGD+ YRPL
Sbjct: 361 LSSSLVVSEHVSSYNFQSTNLKCNLHLLAKQELFIRRNGKLMFLRKADQLEIGDIAYRPL 420
Query: 418 TDGD 421
DGD
Sbjct: 421 QDGD 424
>C0JR65_MAIZE (tr|C0JR65) DNA-directed RNA polymerase OS=Zea mays PE=2 SV=1
Length = 1444
Score = 249 bits (637), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 151/424 (35%), Positives = 237/424 (55%), Gaps = 30/424 (7%)
Query: 21 PSGVITAIKFDVLTGEDIRTISALEIEAAGQVVCSDLGLPNSSEVCTTCGTNDKKLCEGH 80
P ++ AIKFD++T D+ +S++ I V LGLPN S C TCG+ + C+GH
Sbjct: 8 PEAILNAIKFDLMTSTDMEKLSSMSIIEVSDVTSPKLGLPNGSLQCETCGSQRGRDCDGH 67
Query: 81 FGAIKFPFSIVHPYFISEAAEILNKICPACKSIRCDLLIKGVKFLSVDKKLNDCKYCSGI 140
FG K ++ +PYFI + LN+ICP C S R + K L +K CKYCS
Sbjct: 68 FGVTKLAATVHNPYFIDDVVHFLNRICPGCLSPREGI---DTKRLEREKVQATCKYCSKD 124
Query: 141 SMGRYPTMKFR--------VSYNNLSRSPEIISEINDTA---------SKKKTLGQRLAA 183
YP++ F+ + + L R+ ++ I+ A SK K + L
Sbjct: 125 GSKLYPSIVFKTLSSPRVLLFKSKLHRNASVMERISIVAEAADRMPNRSKGKGSLEGLPL 184
Query: 184 DYWDFIPNGSEEEESLVNRR-LSLSQVHHLLSDVDPDFIEKYVPRKSLLDLNYFPVTPNG 242
D+WDF+P+ +++ +S + + LS QV ++L DP+ I+++V R+ LL L+ PVTPN
Sbjct: 185 DFWDFVPSENKQVQSNMTKIILSPYQVFYMLKKSDPELIKQFVSRRELLFLSCLPVTPNC 244
Query: 243 HRVTEFSHRPSNGPKLSFDDRTRACKKLVDFRGPAVELSSH-----VINSLSLSKLNPDK 297
HRV E + +G +L+FDDRT+A K++VD + H + +SL S+++
Sbjct: 245 HRVVEIGYGLPDG-RLTFDDRTKAYKRMVDVSRRIDDYRQHPHFSVLASSLVSSRVSECL 303
Query: 298 TPSNMFTELQQRKVGENACNSSGLRWMKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQ 357
S +++ ++ GE + ++ G++W+KDVVL KR+D FR+++VGDP + L EIG+P
Sbjct: 304 KSSKLYS---KKADGETSTDTYGMKWLKDVVLSKRSDNVFRSIMVGDPKIKLWEIGIPED 360
Query: 358 IAESLQVSVYVNRENKKNLLDCCELRLLEKGHFKVCRKGRPVVLYKKKDLQIGDLLYRPL 417
++ SL VS +V+ N ++ C L LL K + R G+ + L K L+IGD+ YRPL
Sbjct: 361 LSSSLVVSEHVSSYNFQSTNLKCNLHLLAKQELFIRRNGKLMFLRKADQLEIGDIAYRPL 420
Query: 418 TDGD 421
DGD
Sbjct: 421 QDGD 424
>C0JR68_MAIZE (tr|C0JR68) DNA-directed RNA polymerase OS=Zea mays PE=2 SV=1
Length = 1444
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 150/424 (35%), Positives = 236/424 (55%), Gaps = 30/424 (7%)
Query: 21 PSGVITAIKFDVLTGEDIRTISALEIEAAGQVVCSDLGLPNSSEVCTTCGTNDKKLCEGH 80
P ++ AIKFD++T D+ +S++ I V LGLPN S C TCG+ + C+GH
Sbjct: 8 PEAILNAIKFDLMTSTDMEKLSSMSIIEVSDVTSPKLGLPNGSLQCETCGSQRGRDCDGH 67
Query: 81 FGAIKFPFSIVHPYFISEAAEILNKICPACKSIRCDLLIKGVKFLSVDKKLNDCKYCSGI 140
FG K ++ +PYFI + LN+ICP C S R + K L +K CKY S
Sbjct: 68 FGVTKLAATVHNPYFIDDVVHFLNRICPGCLSPREGI---DTKRLEREKVQATCKYYSKD 124
Query: 141 SMGRYPTMKFR--------VSYNNLSRSPEIISEINDTA---------SKKKTLGQRLAA 183
YP++ F+ + + L R+ ++ I+ A SK K + L
Sbjct: 125 GSKLYPSIVFKTLSSPRVLLFKSKLHRNASVMERISIVAEAADRMPNRSKGKGSLEGLPL 184
Query: 184 DYWDFIPNGSEEEESLVNRR-LSLSQVHHLLSDVDPDFIEKYVPRKSLLDLNYFPVTPNG 242
D+WDF+P+ +++ +S + + LS QV ++L DP+ I+++V R+ LL L+ PVTPN
Sbjct: 185 DFWDFVPSENKQVQSNMTKIILSPYQVFYMLKKSDPELIKQFVSRRELLFLSCLPVTPNC 244
Query: 243 HRVTEFSHRPSNGPKLSFDDRTRACKKLVDFRGPAVELSSH-----VINSLSLSKLNPDK 297
HRV E + +G +L+FDDRT+A K++VD + H + +SL S+++
Sbjct: 245 HRVVEIGYGLPDG-RLTFDDRTKAYKRMVDVSRRIDDYRQHPHFSVLASSLVSSRVSECL 303
Query: 298 TPSNMFTELQQRKVGENACNSSGLRWMKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQ 357
S +++ ++ GE + ++ G++W+KDVVL KR+D FR+++VGDP + L EIG+P
Sbjct: 304 KSSKLYS---KKADGETSTDTYGMKWLKDVVLSKRSDNVFRSIMVGDPKIKLWEIGIPED 360
Query: 358 IAESLQVSVYVNRENKKNLLDCCELRLLEKGHFKVCRKGRPVVLYKKKDLQIGDLLYRPL 417
++ SL VS +V+ N ++ C L LL K + R G+ + L K L+IGD+ YRPL
Sbjct: 361 LSSSLVVSEHVSSYNFQSTNLKCNLHLLAKQELFIRRNGKLMFLRKADQLEIGDIAYRPL 420
Query: 418 TDGD 421
DGD
Sbjct: 421 QDGD 424
>K3XDU8_SETIT (tr|K3XDU8) DNA-directed RNA polymerase OS=Setaria italica
GN=Si000065m.g PE=3 SV=1
Length = 1303
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 143/422 (33%), Positives = 222/422 (52%), Gaps = 66/422 (15%)
Query: 18 HNMPSGVITAIKFDVLTGEDIRTISALEIEAAGQVVCSDLGLPNSSEVCTTCGTNDKKLC 77
H +P ++ AI FD++T D+ +S++ I V LGLPN S C TCG+ ++ C
Sbjct: 5 HELPRAILNAITFDLMTSTDMEKLSSISITEVSDVTSPKLGLPNGSSQCETCGSQSERDC 64
Query: 78 EGHFGAIKFPFSIVHPYFISEAAEILNKICPACKSIRCDLLIKGVKFLSVDKKLNDCKYC 137
+GHFG K ++ +PYFI E LN+ICP C ++R ++ +K ++ +V CKYC
Sbjct: 65 DGHFGVTKLAATVHNPYFIDEVVHFLNQICPGCLNLRENIDLKTLERETVRAT---CKYC 121
Query: 138 SGISMGRYPTMKFR--------VSYNNLSRSPEIISEINDTA---------SKKKTLGQR 180
S YP++ F+ +S + L RSP ++ I+ A SK K +
Sbjct: 122 SKDGSKLYPSVIFKTLSSPRVLLSKSKLHRSPSVMERISIVAEAIDRGSNKSKGKGSLEG 181
Query: 181 LAADYWDFIPNGSEEEESLVNR-RLSLSQVHHLLSDVDPDFIEKYVPRKSLLDLNYFPVT 239
L DYWDF+P+ +++ +S + + LS QV H+L DP+ I+++V R+ LL L+ PVT
Sbjct: 182 LPQDYWDFVPSENQQLQSTMTKIILSPYQVFHMLKKSDPELIKQFVSRRELLFLSCLPVT 241
Query: 240 PNGHRVTEFSHRPSNGPKLSFDDRTRACKKLVDFRGPAVELSSHVINSLSLSKLNPDKTP 299
PN HRV E + S+G +L+F L KT
Sbjct: 242 PNCHRVVEIGYGLSDG-RLTF--------------------------------LYSKKTD 268
Query: 300 SNMFTELQQRKVGENACNSSGLRWMKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQIA 359
E + ++ G++W+KD VL KR+D +FR+++VGDP + L EIG+P +A
Sbjct: 269 V------------ETSTDTYGMKWLKDAVLSKRSDNAFRSIMVGDPKIRLWEIGIPENLA 316
Query: 360 ESLQVSVYVNRENKKNLLDCCELRLLEKGHFKVCRKGRPVVLYKKKDLQIGDLLYRPLTD 419
+L VS +V+ N +N+ C L LL K + R G+ + + K L++GD+ YRPL D
Sbjct: 317 SNLVVSEHVSSYNLENINLKCNLHLLAKEELLIRRNGKLMFIRKANQLEVGDIAYRPLQD 376
Query: 420 GD 421
GD
Sbjct: 377 GD 378
>Q01JX0_ORYSA (tr|Q01JX0) DNA-directed RNA polymerase OS=Oryza sativa
GN=OSIGBa0147H17.3 PE=3 SV=1
Length = 1407
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 144/423 (34%), Positives = 227/423 (53%), Gaps = 51/423 (12%)
Query: 17 EHNMPSGVITAIKFDVLTGEDIRTISALEIEAAGQVVCSDLGLPNSSEVCTTCGTNDKKL 76
E N P + AIKF ++T D+ +S+ I V + LGLPN + C TCG+ +
Sbjct: 7 EVNNPVAELNAIKFSLMTSSDMEKLSSATIIEMCDVTNAKLGLPNGAPQCATCGSRSIRD 66
Query: 77 CEGHFGAIKFPFSIVHPYFISEAAEILNKICPACKSIRCDLLIKGVKFLSVDKKLNDCKY 136
C+GHFG IK ++ + YFI E ++LN+ICP C +++ + K ++ CKY
Sbjct: 67 CDGHFGVIKLAATVHNSYFIEEVVQLLNQICPGCLTLKQNGDTKKADGTTIQ---GTCKY 123
Query: 137 CSGISMGRYPTMKFRV--------SYNNLSRSPEIISEINDTA---------SKKKTLGQ 179
CS YP++ F++ S + L R+ ++ +++ A SK K +
Sbjct: 124 CSKDGSKLYPSIIFKMLTSPRVTLSRSKLHRNTSVMDKMSIIAEVAGGVAHKSKNKAPHE 183
Query: 180 RLAADYWDFIPNGSEEEESLVNRR-LSLSQVHHLLSDVDPDFIEKYVPRKSLLDLNYFPV 238
L D+WDFIP+ ++ V ++ LS QV H+L +DP+ I + R+ LL L+ PV
Sbjct: 184 TLPQDFWDFIPDDNQPPIFNVTKKILSPYQVFHMLKKLDPELINQVTRRRELLFLSCLPV 243
Query: 239 TPNGHRVTEFSHRPSNGPKLSFDDRTRACKKLVDFRGPAVELSSHVINSLSLSKLNPDKT 298
TPN HRV E + S+GP+L+FDDRT+A K++VD SK + D++
Sbjct: 244 TPNCHRVAEMPYGHSDGPRLAFDDRTKAYKRMVDL----------------YSKKSDDES 287
Query: 299 PSNMFTELQQRKVGENACNSSGLRWMKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQI 358
+ + ++ G++W+KD++L KR+D +FR+++VGDP + L+EIG+P +
Sbjct: 288 SA--------------STDTYGIKWLKDIILSKRSDNAFRSIMVGDPKINLNEIGIPMGL 333
Query: 359 AESLQVSVYVNRENKKNLLDCCELRLLEKGHFKVCRKGRPVVLYKKKDLQIGDLLYRPLT 418
A +L VS V+ N + + C L LL K V R G + + K L+IGD+ YR L
Sbjct: 334 ALNLVVSEQVSSYNFETINLKCNLHLLTKEVLLVRRNGNLIFVRKANQLEIGDIAYRLLQ 393
Query: 419 DGD 421
DGD
Sbjct: 394 DGD 396
>M0VV69_HORVD (tr|M0VV69) DNA-directed RNA polymerase OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 1056
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 135/437 (30%), Positives = 219/437 (50%), Gaps = 48/437 (10%)
Query: 17 EHNMPSGVITAIKFDVLTGEDIRTISALEIEAAGQVVCSDLGLPNSSEVCTTCGTNDKKL 76
E +P+ + I FD++T ++ S+ I V + LGLPN + C TCG +
Sbjct: 7 EVGIPTVELRGITFDLMTNTEMEKSSSASIVEPSDVTSAKLGLPNGAPQCETCGAQTVRE 66
Query: 77 CEGHFGAIKFPFSIVHPYFISEAAEILNKICPACKSIRCDLLIKGVKFLSVDKKLNDCKY 136
C+GH G IK P ++++P+ E ++LN+ CP C + + + + K + CKY
Sbjct: 67 CDGHSGVIKLPATVLNPHLFEEVVQLLNQTCPGCHTPKQN---RDSKRSNGATSQATCKY 123
Query: 137 CSGISMGRYPTMKFRV---------------SYN---NLSRSPEIISEINDTASKKKTLG 178
CS +YP + F+ YN +S + E+ + D ++ +
Sbjct: 124 CSKDGTKQYPDVIFKALTSPRITLSKAKVQHDYNFMDKISITAEVAGRVTDKSNNNGSC- 182
Query: 179 QRLAADYWDFIPNGSEEEESLVNRRLSLSQVHHLLSDVDPDFIEKYVPRKSLLDLNYFPV 238
+ L DYWDF+P+ + ++ LS QV H+L +DP+ ++ R L+ L+ PV
Sbjct: 183 EVLPLDYWDFVPHHHPPQSNMTKILLSPYQVSHILEQLDPELFSRFASRLELIFLSCLPV 242
Query: 239 TPNGHRVTEFSHRPSNGPKLSFDDRTRACKKLVDFRGPAVELSSH--------------V 284
TPN HRV E + S+GP+L++DD T+A K+ +D +L H V
Sbjct: 243 TPNFHRVAELPYGFSDGPRLAYDDLTKAYKRTIDVGRKLDDLRQHPQFSVFASSLVTSRV 302
Query: 285 INSLSLSKLNPDKTPSNMFTELQQRKVGENACNSSGLRWMKDVVLGKRNDCSFRTVVVGD 344
+ L LSKL+ KT E++ ++ G++W+KD +L KR+D +FR +VGD
Sbjct: 303 VECLKLSKLHSKKTDK------------ESSTDTHGMKWLKDAILSKRSDNAFRGTMVGD 350
Query: 345 PDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEKGHFKVCRKGRPVVLYKK 404
P + L EIG+P +A +L VS +VN N ++ C LL + R G+ +++ K
Sbjct: 351 PKIRLHEIGIPVDLASNLVVSEHVNSYNFDSINSKCNHYLLANEVLVIKRSGKTILVRKP 410
Query: 405 KDLQIGDLLYRPLTDGD 421
L IGD ++R L DGD
Sbjct: 411 NQLVIGDTVHRLLQDGD 427
>M0VV71_HORVD (tr|M0VV71) DNA-directed RNA polymerase OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 1045
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 135/437 (30%), Positives = 219/437 (50%), Gaps = 48/437 (10%)
Query: 17 EHNMPSGVITAIKFDVLTGEDIRTISALEIEAAGQVVCSDLGLPNSSEVCTTCGTNDKKL 76
E +P+ + I FD++T ++ S+ I V + LGLPN + C TCG +
Sbjct: 7 EVGIPTVELRGITFDLMTNTEMEKSSSASIVEPSDVTSAKLGLPNGAPQCETCGAQTVRE 66
Query: 77 CEGHFGAIKFPFSIVHPYFISEAAEILNKICPACKSIRCDLLIKGVKFLSVDKKLNDCKY 136
C+GH G IK P ++++P+ E ++LN+ CP C + + + + K + CKY
Sbjct: 67 CDGHSGVIKLPATVLNPHLFEEVVQLLNQTCPGCHTPKQN---RDSKRSNGATSQATCKY 123
Query: 137 CSGISMGRYPTMKFRV---------------SYN---NLSRSPEIISEINDTASKKKTLG 178
CS +YP + F+ YN +S + E+ + D ++ +
Sbjct: 124 CSKDGTKQYPDVIFKALTSPRITLSKAKVQHDYNFMDKISITAEVAGRVTDKSNNNGSC- 182
Query: 179 QRLAADYWDFIPNGSEEEESLVNRRLSLSQVHHLLSDVDPDFIEKYVPRKSLLDLNYFPV 238
+ L DYWDF+P+ + ++ LS QV H+L +DP+ ++ R L+ L+ PV
Sbjct: 183 EVLPLDYWDFVPHHHPPQSNMTKILLSPYQVSHILEQLDPELFSRFASRLELIFLSCLPV 242
Query: 239 TPNGHRVTEFSHRPSNGPKLSFDDRTRACKKLVDFRGPAVELSSH--------------V 284
TPN HRV E + S+GP+L++DD T+A K+ +D +L H V
Sbjct: 243 TPNFHRVAELPYGFSDGPRLAYDDLTKAYKRTIDVGRKLDDLRQHPQFSVFASSLVTSRV 302
Query: 285 INSLSLSKLNPDKTPSNMFTELQQRKVGENACNSSGLRWMKDVVLGKRNDCSFRTVVVGD 344
+ L LSKL+ KT E++ ++ G++W+KD +L KR+D +FR +VGD
Sbjct: 303 VECLKLSKLHSKKTDK------------ESSTDTHGMKWLKDAILSKRSDNAFRGTMVGD 350
Query: 345 PDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEKGHFKVCRKGRPVVLYKK 404
P + L EIG+P +A +L VS +VN N ++ C LL + R G+ +++ K
Sbjct: 351 PKIRLHEIGIPVDLASNLVVSEHVNSYNFDSINSKCNHYLLANEVLVIKRSGKTILVRKP 410
Query: 405 KDLQIGDLLYRPLTDGD 421
L IGD ++R L DGD
Sbjct: 411 NQLVIGDTVHRLLQDGD 427
>M0VV74_HORVD (tr|M0VV74) DNA-directed RNA polymerase OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 1025
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 135/437 (30%), Positives = 219/437 (50%), Gaps = 48/437 (10%)
Query: 17 EHNMPSGVITAIKFDVLTGEDIRTISALEIEAAGQVVCSDLGLPNSSEVCTTCGTNDKKL 76
E +P+ + I FD++T ++ S+ I V + LGLPN + C TCG +
Sbjct: 7 EVGIPTVELRGITFDLMTNTEMEKSSSASIVEPSDVTSAKLGLPNGAPQCETCGAQTVRE 66
Query: 77 CEGHFGAIKFPFSIVHPYFISEAAEILNKICPACKSIRCDLLIKGVKFLSVDKKLNDCKY 136
C+GH G IK P ++++P+ E ++LN+ CP C + + + + K + CKY
Sbjct: 67 CDGHSGVIKLPATVLNPHLFEEVVQLLNQTCPGCHTPKQN---RDSKRSNGATSQATCKY 123
Query: 137 CSGISMGRYPTMKFRV---------------SYN---NLSRSPEIISEINDTASKKKTLG 178
CS +YP + F+ YN +S + E+ + D ++ +
Sbjct: 124 CSKDGTKQYPDVIFKALTSPRITLSKAKVQHDYNFMDKISITAEVAGRVTDKSNNNGSC- 182
Query: 179 QRLAADYWDFIPNGSEEEESLVNRRLSLSQVHHLLSDVDPDFIEKYVPRKSLLDLNYFPV 238
+ L DYWDF+P+ + ++ LS QV H+L +DP+ ++ R L+ L+ PV
Sbjct: 183 EVLPLDYWDFVPHHHPPQSNMTKILLSPYQVSHILEQLDPELFSRFASRLELIFLSCLPV 242
Query: 239 TPNGHRVTEFSHRPSNGPKLSFDDRTRACKKLVDFRGPAVELSSH--------------V 284
TPN HRV E + S+GP+L++DD T+A K+ +D +L H V
Sbjct: 243 TPNFHRVAELPYGFSDGPRLAYDDLTKAYKRTIDVGRKLDDLRQHPQFSVFASSLVTSRV 302
Query: 285 INSLSLSKLNPDKTPSNMFTELQQRKVGENACNSSGLRWMKDVVLGKRNDCSFRTVVVGD 344
+ L LSKL+ KT E++ ++ G++W+KD +L KR+D +FR +VGD
Sbjct: 303 VECLKLSKLHSKKTDK------------ESSTDTHGMKWLKDAILSKRSDNAFRGTMVGD 350
Query: 345 PDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEKGHFKVCRKGRPVVLYKK 404
P + L EIG+P +A +L VS +VN N ++ C LL + R G+ +++ K
Sbjct: 351 PKIRLHEIGIPVDLASNLVVSEHVNSYNFDSINSKCNHYLLANEVLVIKRSGKTILVRKP 410
Query: 405 KDLQIGDLLYRPLTDGD 421
L IGD ++R L DGD
Sbjct: 411 NQLVIGDTVHRLLQDGD 427
>M0VV76_HORVD (tr|M0VV76) DNA-directed RNA polymerase OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 927
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 135/437 (30%), Positives = 219/437 (50%), Gaps = 48/437 (10%)
Query: 17 EHNMPSGVITAIKFDVLTGEDIRTISALEIEAAGQVVCSDLGLPNSSEVCTTCGTNDKKL 76
E +P+ + I FD++T ++ S+ I V + LGLPN + C TCG +
Sbjct: 7 EVGIPTVELRGITFDLMTNTEMEKSSSASIVEPSDVTSAKLGLPNGAPQCETCGAQTVRE 66
Query: 77 CEGHFGAIKFPFSIVHPYFISEAAEILNKICPACKSIRCDLLIKGVKFLSVDKKLNDCKY 136
C+GH G IK P ++++P+ E ++LN+ CP C + + + + K + CKY
Sbjct: 67 CDGHSGVIKLPATVLNPHLFEEVVQLLNQTCPGCHTPKQN---RDSKRSNGATSQATCKY 123
Query: 137 CSGISMGRYPTMKFRV---------------SYN---NLSRSPEIISEINDTASKKKTLG 178
CS +YP + F+ YN +S + E+ + D ++ +
Sbjct: 124 CSKDGTKQYPDVIFKALTSPRITLSKAKVQHDYNFMDKISITAEVAGRVTDKSNNNGSC- 182
Query: 179 QRLAADYWDFIPNGSEEEESLVNRRLSLSQVHHLLSDVDPDFIEKYVPRKSLLDLNYFPV 238
+ L DYWDF+P+ + ++ LS QV H+L +DP+ ++ R L+ L+ PV
Sbjct: 183 EVLPLDYWDFVPHHHPPQSNMTKILLSPYQVSHILEQLDPELFSRFASRLELIFLSCLPV 242
Query: 239 TPNGHRVTEFSHRPSNGPKLSFDDRTRACKKLVDFRGPAVELSSH--------------V 284
TPN HRV E + S+GP+L++DD T+A K+ +D +L H V
Sbjct: 243 TPNFHRVAELPYGFSDGPRLAYDDLTKAYKRTIDVGRKLDDLRQHPQFSVFASSLVTSRV 302
Query: 285 INSLSLSKLNPDKTPSNMFTELQQRKVGENACNSSGLRWMKDVVLGKRNDCSFRTVVVGD 344
+ L LSKL+ KT E++ ++ G++W+KD +L KR+D +FR +VGD
Sbjct: 303 VECLKLSKLHSKKTDK------------ESSTDTHGMKWLKDAILSKRSDNAFRGTMVGD 350
Query: 345 PDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEKGHFKVCRKGRPVVLYKK 404
P + L EIG+P +A +L VS +VN N ++ C LL + R G+ +++ K
Sbjct: 351 PKIRLHEIGIPVDLASNLVVSEHVNSYNFDSINSKCNHYLLANEVLVIKRSGKTILVRKP 410
Query: 405 KDLQIGDLLYRPLTDGD 421
L IGD ++R L DGD
Sbjct: 411 NQLVIGDTVHRLLQDGD 427
>C5YE51_SORBI (tr|C5YE51) DNA-directed RNA polymerase OS=Sorghum bicolor
GN=Sb06g025933 PE=3 SV=1
Length = 1203
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 143/420 (34%), Positives = 213/420 (50%), Gaps = 81/420 (19%)
Query: 20 MPSGVITAIKFDVLTGEDIRTISALEIEAAGQVVCSDLGLPNSSEVCTTCGTNDKKLCEG 79
+P + AIKFD++T D+ +S++ + V LGLPN+S C TCG+ + C+G
Sbjct: 7 LPEATLNAIKFDLMTSTDMEKLSSMSVIEVSDVTSPKLGLPNASPQCETCGSKSGRDCDG 66
Query: 80 HFGAIKFPFSIVHPYFISEAAEILNKICPACKSIRCDLLIKGVKFLSVDKKLNDCKYCSG 139
HFG K ++ +PYFI + LN+ICP C S R +G+ KL
Sbjct: 67 HFGVTKLAATVHNPYFIDDVVHFLNQICPGCLSPR-----EGINMKKDGSKL-------- 113
Query: 140 ISMGRYPTMKFR--------VSYNNLSRSPEIISEINDTA---------SKKKTLGQRLA 182
YP++ F+ +S + L RSP ++ I+ A SK K L + L
Sbjct: 114 -----YPSVIFKTLSSPRVLLSKSKLHRSPSVMERISIVAEAAERVSNRSKGKGLLEGLP 168
Query: 183 ADYWDFIPNGSEEEESLVNR-RLSLSQVHHLLSDVDPDFIEKYVPRKSLLDLNYFPVTPN 241
DYWDF+P+ +++ +S + + LS QV H+L DP+ I+++V R+ LL L+ PVTPN
Sbjct: 169 QDYWDFVPSENKQVQSNMTKIILSPYQVFHMLKKSDPELIKQFVSRRELLFLSCLPVTPN 228
Query: 242 GHRVTEFSHRPSNGPKLSFDDRTRACKKLVDFRGPAVELSSHVINSLSLSKLNPDKTPSN 301
HRV E + S+G +++F L KT
Sbjct: 229 CHRVVEIGYGLSDG-RVTF--------------------------------LYSKKTD-- 253
Query: 302 MFTELQQRKVGENACNSSGLRWMKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAES 361
GE + + SG++W+KD VL KR+D +FR+ +VGDP + L EIG+P +A +
Sbjct: 254 ----------GETSTDPSGMKWLKDAVLSKRSDNAFRSTMVGDPKIKLWEIGIPEDLASN 303
Query: 362 LQVSVYVNRENKKNLLDCCELRLLEKGHFKVCRKGRPVVLYKKKDLQIGDLLYRPLTDGD 421
L VS +VN N +N+ C L LL K + R G+ + L K L+IGD+ YRPL DGD
Sbjct: 304 LVVSDHVNSYNFENINLKCNLHLLTKEELFIRRNGKLMFLRKADQLEIGDIAYRPLQDGD 363
>M7ZUZ1_TRIUA (tr|M7ZUZ1) DNA-directed RNA polymerase D subunit 1 OS=Triticum
urartu GN=TRIUR3_10627 PE=4 SV=1
Length = 1402
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 125/416 (30%), Positives = 201/416 (48%), Gaps = 58/416 (13%)
Query: 17 EHNMPSGVITAIKFDVLTGEDIRTISALEIEAAGQVVCSDLGLPNSSEVCTTCGTNDKKL 76
E MP+G + I F ++T ++ S++ I V + LGLPN + C TCG +
Sbjct: 49 EMGMPTGELKGITFYLMTNTEMEKSSSVSIVEPSDVSSAKLGLPNGAPQCETCGAQSVRE 108
Query: 77 CEGHFGAIKFPFSIVHPYFISEAAEILNKICPACKSIRCDLLIKGVKFLSVDKKLNDCKY 136
C+GH G IK P ++ +P+ E ++LN+ICP C + + + + K CKY
Sbjct: 109 CDGHSGVIKLPATVFNPHLFEEVVQLLNQICPGCHTPKQN---RDSKRSDGATSQATCKY 165
Query: 137 CSGISMGRYPTMKFR--------VSYNNLSRSPEIISEINDTASKKKTL---GQRLAADY 185
CS +YP + F+ +S L R P ++ +I+ TA + + L DY
Sbjct: 166 CSKDGTKQYPDVIFKTLTSPRMTLSKAKLQRDPSVMDKISLTAEVADRVTDSAEVLPLDY 225
Query: 186 WDFIPNGSEEEESLVNRRLSLSQVHHLLSDVDPDFIEKYVPRKSLLDLNYFPVTPNGHRV 245
WDF+P+ + ++ LS Q H+L +DP+ ++ R L+ L+ PVTPN HRV
Sbjct: 226 WDFVPHHHPPQSNMTKILLSPYQASHILKQLDPELFSRFASRPELIFLSCLPVTPNFHRV 285
Query: 246 TEFSHRPSNGPKLSFDDRTRACKKLVDFRGPAVELSSHVINSLSLSKLNPDKTPSNMFTE 305
E + S+GP+L++ L+ KT
Sbjct: 286 AELPYGFSDGPRLAY--------------------------------LHSKKTDK----- 308
Query: 306 LQQRKVGENACNSSGLRWMKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVS 365
E++ ++ G++W+KD +L KR+D +FR +VGDP + L EIG+P +A +L VS
Sbjct: 309 -------ESSTDTHGMKWLKDAILSKRSDNAFRGTMVGDPKIRLHEIGIPVDLASNLLVS 361
Query: 366 VYVNRENKKNLLDCCELRLLEKGHFKVCRKGRPVVLYKKKDLQIGDLLYRPLTDGD 421
+VN N ++ C LL + R G+ +++ K L IGD ++R L DGD
Sbjct: 362 EHVNSYNFDSINSKCNCYLLANEKLVIKRSGKTIIVRKPNQLVIGDTVHRLLQDGD 417
>M8C5N9_AEGTA (tr|M8C5N9) DNA-directed RNA polymerase III subunit RPC1
OS=Aegilops tauschii GN=F775_07056 PE=4 SV=1
Length = 1334
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 126/416 (30%), Positives = 199/416 (47%), Gaps = 58/416 (13%)
Query: 17 EHNMPSGVITAIKFDVLTGEDIRTISALEIEAAGQVVCSDLGLPNSSEVCTTCGTNDKKL 76
E MP+G + I F ++T ++ S+ I V + LGLPN + C TCG +
Sbjct: 13 EMGMPTGELKGITFYLMTNTEMEKSSSASIVEPSDVSSAKLGLPNGAPQCETCGAQSVRE 72
Query: 77 CEGHFGAIKFPFSIVHPYFISEAAEILNKICPACKSIRCDLLIKGVKFLSVDKKLNDCKY 136
C+GH G IK P ++ +P+ E ++LN+ICP C + + + + K CKY
Sbjct: 73 CDGHSGVIKLPATVFNPHLFEEVVQLLNQICPGCHTPKQN---RDSKRSDGATSQATCKY 129
Query: 137 CSGISMGRYPTMKFR--------VSYNNLSRSPEIISEINDTASKKKTL---GQRLAADY 185
CS +YP + F+ +S L R ++ +I+ TA + + L DY
Sbjct: 130 CSKDGTKQYPDVIFKTLTSPRITLSKAKLLRDHNVMDKISLTAEVADRVTDSAEVLPLDY 189
Query: 186 WDFIPNGSEEEESLVNRRLSLSQVHHLLSDVDPDFIEKYVPRKSLLDLNYFPVTPNGHRV 245
WDF+P+ + ++ LS QV H+L +DP ++ R L+ L+ PVTPN HRV
Sbjct: 190 WDFVPHHHPPQSNMTKILLSPYQVSHILEQLDPKLFSRFASRPELIFLSCLPVTPNFHRV 249
Query: 246 TEFSHRPSNGPKLSFDDRTRACKKLVDFRGPAVELSSHVINSLSLSKLNPDKTPSNMFTE 305
E + S+GP+L++ L+ KT
Sbjct: 250 AELPYGFSDGPRLAY--------------------------------LHSKKTDK----- 272
Query: 306 LQQRKVGENACNSSGLRWMKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVS 365
E++ ++ G++W+KD +L KR+D +FR +VGDP + L EIG+P +A +L VS
Sbjct: 273 -------ESSTDTHGMKWLKDAILSKRSDNAFRGTMVGDPKIRLHEIGIPVDLASNLVVS 325
Query: 366 VYVNRENKKNLLDCCELRLLEKGHFKVCRKGRPVVLYKKKDLQIGDLLYRPLTDGD 421
+VN N N+ C LL + R G+ +++ K L IGD ++R L DGD
Sbjct: 326 EHVNSYNFDNINLKCNCYLLANEKLVIKRSGKTIIVRKPNQLVIGDTVHRLLQDGD 381
>C0JR69_MAIZE (tr|C0JR69) DNA-directed RNA polymerase OS=Zea mays PE=2 SV=1
Length = 352
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 122/349 (34%), Positives = 192/349 (55%), Gaps = 24/349 (6%)
Query: 21 PSGVITAIKFDVLTGEDIRTISALEIEAAGQVVCSDLGLPNSSEVCTTCGTNDKKLCEGH 80
P ++ AIKFD++T D+ +S++ I V LGLPN S C TCG+ + C+GH
Sbjct: 8 PEAILNAIKFDLMTSTDMEKLSSMSIIEVSDVTSPKLGLPNGSLQCETCGSQRGRDCDGH 67
Query: 81 FGAIKFPFSIVHPYFISEAAEILNKICPACKSIRCDLLIKGVKFLSVDKKLNDCKYCSGI 140
FG K ++ +PYFI + LN+ICP C S R + K L +K CKYCS
Sbjct: 68 FGVTKLAATVHNPYFIDDVVHFLNRICPGCLSPREGI---DTKRLEREKVQATCKYCSKD 124
Query: 141 SMGRYPTMKFR--------VSYNNLSRSPEIISEINDTA---------SKKKTLGQRLAA 183
YP++ F+ + + L R+ ++ I+ A SK K + L
Sbjct: 125 GSKLYPSIVFKTLSSPRVLLFKSKLHRNASVMERISIVAEAADRMPNRSKGKGSLEGLPL 184
Query: 184 DYWDFIPNGSEEEESLVNR-RLSLSQVHHLLSDVDPDFIEKYVPRKSLLDLNYFPVTPNG 242
D+WDF+P+ +++ +S + + LS QV ++L DP+ I+++V R+ LL L+ PVTPN
Sbjct: 185 DFWDFVPSENKQVQSNMTKIILSPYQVFYMLKKSDPELIKQFVSRRELLFLSCLPVTPNC 244
Query: 243 HRVTEFSHRPSNGPKLSFDDRTRACKKLVDFRGPAVELSSHVINSLSLSKLNPDKTPSNM 302
HRV E + +G +L+FDDRT+A K++VD + H S+ S L + +
Sbjct: 245 HRVVEIGYGLPDG-RLTFDDRTKAYKRMVDVSRRIDDYRQHPHFSVLASSLVSSRVSECL 303
Query: 303 -FTELQQRKV-GENACNSSGLRWMKDVVLGKRNDCSFRTVVVGDPDLAL 349
++L +K GE + ++ G++W+KDVVL KR+D FR+++VGDP + L
Sbjct: 304 KSSKLYSKKADGETSTDTYGMKWLKDVVLSKRSDNVFRSIMVGDPKIKL 352
>B8AT49_ORYSI (tr|B8AT49) DNA-directed RNA polymerase OS=Oryza sativa subsp.
indica GN=OsI_17044 PE=3 SV=1
Length = 1598
Score = 180 bits (457), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 126/433 (29%), Positives = 203/433 (46%), Gaps = 98/433 (22%)
Query: 17 EHNMPSGVITAIKFDVLTGEDIRTISALEIEAAGQVVCSDLGLPNSSEVCTTCGTNDKKL 76
E N P + AIKF ++T D+ +S+ I V + LGLPN + C TCG+ +
Sbjct: 7 EVNNPVAELNAIKFSLMTSSDMEKLSSATIIEMCDVTNAKLGLPNGAPQCATCGSRSIRD 66
Query: 77 CE----------GHFGAIKFPFSIVHPYFISEAAEILNKICPACKSIRCDLLIKGVKFLS 126
C+ GHFG IK ++ + YFI E ++LN+ICP C +++ + K +
Sbjct: 67 CDGKKKLTGKLLGHFGVIKLAATVHNSYFIEEVVQLLNQICPGCLTLKQNGDTKKADGTT 126
Query: 127 VDKKLNDCKYCSGISMGRYPTMKFR--------VSYNNLSRSPEIISEINDTA------- 171
+ CKYCS YP++ F+ +S + L R+ ++ +++ A
Sbjct: 127 IQ---GTCKYCSKDGSKLYPSIIFKMLTSPRVTLSRSKLHRNTSVMDKMSIIAEVAGGVA 183
Query: 172 --SKKKTLGQRLAADYWDFIPNGSEEEESLVNRR-LSLSQVHHLLSDVDPDFIEKYVPRK 228
SK K + L D+WDFIP+ ++ V ++ LS QV H+L +DP+ I +
Sbjct: 184 HKSKNKAPHETLPQDFWDFIPDDNQPPIFNVTKKILSPYQVFHMLKKLDPELINQ----- 238
Query: 229 SLLDLNYFPVTPNGHRVTEFSHRPSNGPKLSFDDRTRACKKLVDFRGPAVELSSHVINSL 288
DDRT+A K++VD
Sbjct: 239 --------------------------------DDRTKAYKRMVDL--------------- 251
Query: 289 SLSKLNPDKTPSNMFTELQQRKVGENACNSSGLRWMKDVVLGKRNDCSFRTVVVGDPDLA 348
SK + D++ + + ++ G++W+KD++L KR+D +FR+++VGDP +
Sbjct: 252 -YSKKSDDESSA--------------STDTYGIKWLKDIILSKRSDNAFRSIMVGDPKIN 296
Query: 349 LSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEKGHFKVCRKGRPVVLYKKKDLQ 408
L+EIG+P +A +L VS V+ N + + C L LL K V R G + + K L+
Sbjct: 297 LNEIGIPMGLALNLVVSEQVSSYNFETINLKCNLHLLTKEVLLVRRNGNLIFVRKANQLE 356
Query: 409 IGDLLYRPLTDGD 421
IGD+ YR L DGD
Sbjct: 357 IGDIAYRLLQDGD 369
>Q7XTZ3_ORYSJ (tr|Q7XTZ3) DNA-directed RNA polymerase OS=Oryza sativa subsp.
japonica GN=OSJNBa0019K04.4 PE=3 SV=2
Length = 1664
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 126/433 (29%), Positives = 202/433 (46%), Gaps = 98/433 (22%)
Query: 17 EHNMPSGVITAIKFDVLTGEDIRTISALEIEAAGQVVCSDLGLPNSSEVCTTCGTNDKKL 76
E N P + AIKF ++T D+ +S+ I V + LGLPN + C TCG+ +
Sbjct: 39 EVNNPVAELNAIKFSLMTSSDMEKLSSATIIEMCDVTNAKLGLPNGAPQCATCGSRSIRD 98
Query: 77 CE----------GHFGAIKFPFSIVHPYFISEAAEILNKICPACKSIRCDLLIKGVKFLS 126
C+ GHFG IK ++ + YFI E ++LN+ICP C +++ + K +
Sbjct: 99 CDGKKKLTGKLLGHFGVIKLAATVHNSYFIEEVVQLLNQICPGCLTLKQNGDTKKADGTT 158
Query: 127 VDKKLNDCKYCSGISMGRYPTMKFR--------VSYNNLSRSPEIISEINDTA------- 171
+ CKYCS YP++ F+ +S + L R+ ++ +++ A
Sbjct: 159 IQ---GTCKYCSKDGSKLYPSIIFKMLTSPRVTLSRSKLHRNTSVMDKMSIIAEVAGGVA 215
Query: 172 --SKKKTLGQRLAADYWDFIPNGSEEEESLVNRR-LSLSQVHHLLSDVDPDFIEKYVPRK 228
SK K + L D+WDFIP+ ++ V ++ LS QV H+L +DP+ I +
Sbjct: 216 HKSKNKAPHETLPQDFWDFIPDDNQPPIFNVTKKILSPYQVFHMLKKLDPELINQ----- 270
Query: 229 SLLDLNYFPVTPNGHRVTEFSHRPSNGPKLSFDDRTRACKKLVDFRGPAVELSSHVINSL 288
DDRT+A K++VD
Sbjct: 271 --------------------------------DDRTKAYKRMVDL--------------- 283
Query: 289 SLSKLNPDKTPSNMFTELQQRKVGENACNSSGLRWMKDVVLGKRNDCSFRTVVVGDPDLA 348
SK + D++ + + ++ G +W+KD++L KR+D +FR+++VGDP +
Sbjct: 284 -YSKKSDDESSA--------------STDTYGTKWLKDIILSKRSDNAFRSIMVGDPKIN 328
Query: 349 LSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEKGHFKVCRKGRPVVLYKKKDLQ 408
L+EIG+P +A +L VS V+ N + + C L LL K V R G + + K L+
Sbjct: 329 LNEIGIPMGLALNLVVSEQVSSYNFETINLKCNLHLLTKEVLLVRRNGNLIFVRKANQLE 388
Query: 409 IGDLLYRPLTDGD 421
IGD+ YR L DGD
Sbjct: 389 IGDIAYRLLQDGD 401
>B9FC30_ORYSJ (tr|B9FC30) DNA-directed RNA polymerase OS=Oryza sativa subsp.
japonica GN=OsJ_15844 PE=3 SV=1
Length = 1623
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 126/433 (29%), Positives = 202/433 (46%), Gaps = 98/433 (22%)
Query: 17 EHNMPSGVITAIKFDVLTGEDIRTISALEIEAAGQVVCSDLGLPNSSEVCTTCGTNDKKL 76
E N P + AIKF ++T D+ +S+ I V + LGLPN + C TCG+ +
Sbjct: 28 EVNNPVAELNAIKFSLMTSSDMEKLSSATIIEMCDVTNAKLGLPNGAPQCATCGSRSIRD 87
Query: 77 CE----------GHFGAIKFPFSIVHPYFISEAAEILNKICPACKSIRCDLLIKGVKFLS 126
C+ GHFG IK ++ + YFI E ++LN+ICP C +++ + K +
Sbjct: 88 CDGKKKLTGKLLGHFGVIKLAATVHNSYFIEEVVQLLNQICPGCLTLKQNGDTKKADGTT 147
Query: 127 VDKKLNDCKYCSGISMGRYPTMKFRV--------SYNNLSRSPEIISEINDTA------- 171
+ CKYCS YP++ F++ S + L R+ ++ +++ A
Sbjct: 148 IQ---GTCKYCSKDGSKLYPSIIFKMLTSPRVTLSRSKLHRNTSVMDKMSIIAEVAGGVA 204
Query: 172 --SKKKTLGQRLAADYWDFIPNGSEEEESLVNRR-LSLSQVHHLLSDVDPDFIEKYVPRK 228
SK K + L D+WDFIP+ ++ V ++ LS QV H+L +DP+ I +
Sbjct: 205 HKSKNKAPHETLPQDFWDFIPDDNQPPIFNVTKKILSPYQVFHMLKKLDPELINQ----- 259
Query: 229 SLLDLNYFPVTPNGHRVTEFSHRPSNGPKLSFDDRTRACKKLVDFRGPAVELSSHVINSL 288
DDRT+A K++VD
Sbjct: 260 --------------------------------DDRTKAYKRMVDL--------------- 272
Query: 289 SLSKLNPDKTPSNMFTELQQRKVGENACNSSGLRWMKDVVLGKRNDCSFRTVVVGDPDLA 348
SK + D++ + + ++ G +W+KD++L KR+D +FR+++VGDP +
Sbjct: 273 -YSKKSDDESSA--------------STDTYGTKWLKDIILSKRSDNAFRSIMVGDPKIN 317
Query: 349 LSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEKGHFKVCRKGRPVVLYKKKDLQ 408
L+EIG+P +A +L VS V+ N + + C L LL K V R G + + K L+
Sbjct: 318 LNEIGIPMGLALNLVVSEQVSSYNFETINLKCNLHLLTKEVLLVRRNGNLIFVRKANQLE 377
Query: 409 IGDLLYRPLTDGD 421
IGD+ YR L DGD
Sbjct: 378 IGDIAYRLLQDGD 390
>I1HLJ9_BRADI (tr|I1HLJ9) DNA-directed RNA polymerase OS=Brachypodium distachyon
GN=BRADI2G34870 PE=3 SV=1
Length = 324
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 93/258 (36%), Positives = 147/258 (56%), Gaps = 18/258 (6%)
Query: 16 HEHNMPSGVITAIKFDVLTGEDIRTISALEIEAAGQVVCSDLGLPNSSEVCTTCGTNDKK 75
+E ++P + A+KFD+L+ DI T+S+ I A V + LGLPN++ C TCG+ + +
Sbjct: 70 NEMDVPMAELKALKFDLLSSADIETLSSANIIEASDVTSAKLGLPNAAPQCVTCGSQNVR 129
Query: 76 LCEGHFGAIKFPFSIVHPYFISEAAEILNKICPACKSIRCDLLIKGVKFLSVDKKLNDCK 135
C+GH G IK P ++ PYF+ + + LN+ICP C + + + K ++ + CK
Sbjct: 130 DCDGHSGVIKLPATVYSPYFLEQLVQFLNQICPGCWTPKQNRDTKRSDAATIQEP---CK 186
Query: 136 YCSGISMGRYPTMKFRV--------SYNNLSRSPEIISEINDTA-----SKKKTLGQRLA 182
YCS G YP++ F+V S + L R+ ++ +++ TA SK K+ + L
Sbjct: 187 YCS--KDGLYPSVIFKVLTSPRITLSKSKLQRNTSVMDKVSVTAEVINMSKNKSSLEVLP 244
Query: 183 ADYWDFIPNGSEEEESLVNRRLSLSQVHHLLSDVDPDFIEKYVPRKSLLDLNYFPVTPNG 242
DYW+F+P+ + + LS QV H+L VD + I K+ PR+ LL L+ PVTPN
Sbjct: 245 HDYWNFVPHNQPPQPNTTKILLSPYQVFHILKQVDLELITKFAPRRELLFLSCLPVTPNR 304
Query: 243 HRVTEFSHRPSNGPKLSF 260
HRV E +R S+GP L++
Sbjct: 305 HRVAEMPYRFSDGPSLAY 322
>M0TPQ4_MUSAM (tr|M0TPQ4) DNA-directed RNA polymerase OS=Musa acuminata subsp.
malaccensis PE=3 SV=1
Length = 1674
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 97/220 (44%), Positives = 129/220 (58%), Gaps = 14/220 (6%)
Query: 208 QVHHLLSDVDPDFIEKYVPRKSLLDLNYFPVTPNGHRVTEFSHRPSNGPKLSFDDRTRAC 267
QV LLS++DP+FI+++V R+ LL L+Y P+TPN RV E SH ++GPKLSFD+RTRA
Sbjct: 64 QVFCLLSELDPEFIQQFVSRRELLFLSYLPITPNCQRVVETSHVFADGPKLSFDERTRAY 123
Query: 268 KKLVDFRGPAVELSSHVINSLSLSKLNPDKTPSNMFTELQQRKVGENACNSS------GL 321
K+L D S I L+ +N K S L + +A +SS G+
Sbjct: 124 KRLADV--------SKKIGDTLLAAINFSKLYSGTAVVLFDHQSNLHASSSSRGDSTSGI 175
Query: 322 RWMKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCE 381
RW+KDVVL KR D FR +VGDP + L EIG+P I+ESL V+ VN N + L C
Sbjct: 176 RWLKDVVLSKRTDNVFRMTMVGDPKIKLQEIGIPFDISESLIVAEQVNSYNLEKLNMSCN 235
Query: 382 LRLLEKGHFKVCRKGRPVVLYKKKDLQIGDLLYRPLTDGD 421
L LL K KG+ L+K LQ+GD++ RPL +GD
Sbjct: 236 LHLLRKEGLNTRSKGQLTSLHKTNQLQVGDIVSRPLENGD 275
>M8BYW7_AEGTA (tr|M8BYW7) Uncharacterized protein OS=Aegilops tauschii
GN=F775_17912 PE=4 SV=1
Length = 325
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 134/257 (52%), Gaps = 25/257 (9%)
Query: 25 ITAIKFDVLTGEDIRTISALEIEAAGQVVCSDLGLPNSSEVCTTCGTNDKKLCEGHFGAI 84
+ AIKFD+++ +D++ S+ I A V + LGLPN ++ C TCG+ K +GHFG I
Sbjct: 41 LNAIKFDLMSSKDMKKYSSASIAKASDVTRAKLGLPNGAKKCETCGSRSKCDGDGHFGVI 100
Query: 85 KFPFSIVHPYFISEAAEILNKICPAC------------KSIRCDLLIKGVKFLSVDKKLN 132
K P + +PY + EA ++LN+ICPA S+ + + D +
Sbjct: 101 KLPTIVFNPYTVEEAVQLLNQICPAATLQRKTDIQRFDHSLTHTHTQREARMQRSDGATS 160
Query: 133 D--CKYCSGISMGRYPTMKFRV-------SYNN---LSRSPEIISEINDTASKKKTLGQR 180
CKYCS +YP + F+ + N L ++P I+ I+ TA + +
Sbjct: 161 QATCKYCSKDDTKQYPDVIFKTLASPRIRGFKNKPKLQQNPTIMDRISVTAEVVDRVTDK 220
Query: 181 LAADYWDFIPNGSEEEESLVNRRLSLSQVHHLLSDV-DPDFIEKYVPRKSLLDLNYFPVT 239
L DYWDF+P+ + ++ +S SQV H+L + DP+ I ++V R+ L+ ++ PVT
Sbjct: 221 LPQDYWDFLPHRHPSQSNMTKILISPSQVRHILKQLDDPERISRFVSRRELIYMSCLPVT 280
Query: 240 PNGHRVTEFSHRPSNGP 256
P HRV E + S+GP
Sbjct: 281 PKFHRVAELPYEFSDGP 297
>M0VV73_HORVD (tr|M0VV73) DNA-directed RNA polymerase OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 858
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 82/232 (35%), Positives = 125/232 (53%), Gaps = 26/232 (11%)
Query: 204 LSLSQVHHLLSDVDPDFIEKYVPRKSLLDLNYFPVTPNGHRVTEFSHRPSNGPKLSFDDR 263
LS QV H+L +DP+ ++ R L+ L+ PVTPN HRV E + S+GP+L++DD
Sbjct: 21 LSHLQVSHILEQLDPELFSRFASRLELIFLSCLPVTPNFHRVAELPYGFSDGPRLAYDDL 80
Query: 264 TRACKKLVDFRGPAVELSSH--------------VINSLSLSKLNPDKTPSNMFTELQQR 309
T+A K+ +D +L H V+ L LSKL+ KT
Sbjct: 81 TKAYKRTIDVGRKLDDLRQHPQFSVFASSLVTSRVVECLKLSKLHSKKTDK--------- 131
Query: 310 KVGENACNSSGLRWMKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVN 369
E++ ++ G++W+KD +L KR+D +FR +VGDP + L EIG+P +A +L VS +VN
Sbjct: 132 ---ESSTDTHGMKWLKDAILSKRSDNAFRGTMVGDPKIRLHEIGIPVDLASNLVVSEHVN 188
Query: 370 RENKKNLLDCCELRLLEKGHFKVCRKGRPVVLYKKKDLQIGDLLYRPLTDGD 421
N ++ C LL + R G+ +++ K L IGD ++R L DGD
Sbjct: 189 SYNFDSINSKCNHYLLANEVLVIKRSGKTILVRKPNQLVIGDTVHRLLQDGD 240
>M0VV68_HORVD (tr|M0VV68) DNA-directed RNA polymerase OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 869
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 82/232 (35%), Positives = 125/232 (53%), Gaps = 26/232 (11%)
Query: 204 LSLSQVHHLLSDVDPDFIEKYVPRKSLLDLNYFPVTPNGHRVTEFSHRPSNGPKLSFDDR 263
LS QV H+L +DP+ ++ R L+ L+ PVTPN HRV E + S+GP+L++DD
Sbjct: 21 LSHLQVSHILEQLDPELFSRFASRLELIFLSCLPVTPNFHRVAELPYGFSDGPRLAYDDL 80
Query: 264 TRACKKLVDFRGPAVELSSH--------------VINSLSLSKLNPDKTPSNMFTELQQR 309
T+A K+ +D +L H V+ L LSKL+ KT
Sbjct: 81 TKAYKRTIDVGRKLDDLRQHPQFSVFASSLVTSRVVECLKLSKLHSKKTDK--------- 131
Query: 310 KVGENACNSSGLRWMKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVN 369
E++ ++ G++W+KD +L KR+D +FR +VGDP + L EIG+P +A +L VS +VN
Sbjct: 132 ---ESSTDTHGMKWLKDAILSKRSDNAFRGTMVGDPKIRLHEIGIPVDLASNLVVSEHVN 188
Query: 370 RENKKNLLDCCELRLLEKGHFKVCRKGRPVVLYKKKDLQIGDLLYRPLTDGD 421
N ++ C LL + R G+ +++ K L IGD ++R L DGD
Sbjct: 189 SYNFDSINSKCNHYLLANEVLVIKRSGKTILVRKPNQLVIGDTVHRLLQDGD 240
>M0VV72_HORVD (tr|M0VV72) DNA-directed RNA polymerase OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 854
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 125/232 (53%), Gaps = 26/232 (11%)
Query: 204 LSLSQVHHLLSDVDPDFIEKYVPRKSLLDLNYFPVTPNGHRVTEFSHRPSNGPKLSFDDR 263
L+ + V H+L +DP+ ++ R L+ L+ PVTPN HRV E + S+GP+L++DD
Sbjct: 17 LATALVSHILEQLDPELFSRFASRLELIFLSCLPVTPNFHRVAELPYGFSDGPRLAYDDL 76
Query: 264 TRACKKLVDFRGPAVELSSH--------------VINSLSLSKLNPDKTPSNMFTELQQR 309
T+A K+ +D +L H V+ L LSKL+ KT
Sbjct: 77 TKAYKRTIDVGRKLDDLRQHPQFSVFASSLVTSRVVECLKLSKLHSKKTDK--------- 127
Query: 310 KVGENACNSSGLRWMKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVN 369
E++ ++ G++W+KD +L KR+D +FR +VGDP + L EIG+P +A +L VS +VN
Sbjct: 128 ---ESSTDTHGMKWLKDAILSKRSDNAFRGTMVGDPKIRLHEIGIPVDLASNLVVSEHVN 184
Query: 370 RENKKNLLDCCELRLLEKGHFKVCRKGRPVVLYKKKDLQIGDLLYRPLTDGD 421
N ++ C LL + R G+ +++ K L IGD ++R L DGD
Sbjct: 185 SYNFDSINSKCNHYLLANEVLVIKRSGKTILVRKPNQLVIGDTVHRLLQDGD 236
>M0VV75_HORVD (tr|M0VV75) DNA-directed RNA polymerase OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 741
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 79/221 (35%), Positives = 124/221 (56%), Gaps = 3/221 (1%)
Query: 204 LSLSQVHHLLSDVDPDFIEKYVPRKSLLDLNYFPVTPNGHRVTEFSHRPSNGPKLSFDDR 263
LS QV H+L +DP+ ++ R L+ L+ PVTPN HRV E + S+GP+L++DD
Sbjct: 21 LSHLQVSHILEQLDPELFSRFASRLELIFLSCLPVTPNFHRVAELPYGFSDGPRLAYDDL 80
Query: 264 TRACKKLVDFRGPAVELSSHVINSLSLSKLNPDKTPS--NMFTELQQRKVG-ENACNSSG 320
T+A K+ +D +L H S+ S L + + L +K E++ ++ G
Sbjct: 81 TKAYKRTIDVGRKLDDLRQHPQFSVFASSLVTSRVVECLKLSKALHSKKTDKESSTDTHG 140
Query: 321 LRWMKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCC 380
++W+KD +L KR+D +FR +VGDP + L EIG+P +A +L VS +VN N ++ C
Sbjct: 141 MKWLKDAILSKRSDNAFRGTMVGDPKIRLHEIGIPVDLASNLVVSEHVNSYNFDSINSKC 200
Query: 381 ELRLLEKGHFKVCRKGRPVVLYKKKDLQIGDLLYRPLTDGD 421
LL + R G+ +++ K L IGD ++R L DGD
Sbjct: 201 NHYLLANEVLVIKRSGKTILVRKPNQLVIGDTVHRLLQDGD 241
>B9G500_ORYSJ (tr|B9G500) DNA-directed RNA polymerase OS=Oryza sativa subsp.
japonica GN=OsJ_30285 PE=3 SV=1
Length = 1384
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 74/231 (32%), Positives = 122/231 (52%), Gaps = 21/231 (9%)
Query: 17 EHNMPSGVITAIKFDVLTGEDIRTISALEIEAAGQVVCSDLGLPNSSEVCTTCGTNDKKL 76
E MP + A+KF ++T D+ +S+ I V + LGLPN + C TCG+ +
Sbjct: 33 EVKMPEADLKAVKFSLMTSSDMEKLSSASIIEMCDVTNAKLGLPNGAPQCATCGSQSVRD 92
Query: 77 CEGHFGAIKFPFSIVHPYFISEAAEILNKICPACKSIRCDLLIKGVKFLSVDKKLNDCKY 136
C+GHFG IK ++ +P FI E ++LN+ICP C +++ + K ++ CKY
Sbjct: 93 CDGHFGVIKLAATVHNPCFIEEVVQLLNQICPGCLTLKQNGDTKKTDGTTIQ---TTCKY 149
Query: 137 CSGISMGRYPTMKFRV--------SYNNLSRSPEIISEINDTA---------SKKKTLGQ 179
CS YP++ F++ S + L R+ ++ +I+ A SK K +
Sbjct: 150 CSKDGAKLYPSVIFKMLTSPRVTLSRSKLHRNTSVMDKISIIAEVAGGVTHNSKNKAPHE 209
Query: 180 RLAADYWDFIPNGSEEEESLVNRR-LSLSQVHHLLSDVDPDFIEKYVPRKS 229
L D+WDF+P+ ++ +S V ++ LS QV H+L ++DP+ I + RKS
Sbjct: 210 TLPQDFWDFVPDDNQPPQSNVAKKILSPYQVFHMLKNLDPELINQLYSRKS 260
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 81/135 (60%), Gaps = 8/135 (5%)
Query: 290 LSKLNPDKTPSNMFTELQQRKV-GENAC--NSSGLRWMKDVVLGKRNDCSFRTVVVGDPD 346
L L+P+ + +L RK GE+ ++ G +W+KD++L KR+D +FR+++VGDP
Sbjct: 244 LKNLDPE-----LINQLYSRKSDGEDPTSPDTYGTKWLKDIILSKRSDNAFRSIMVGDPK 298
Query: 347 LALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEKGHFKVCRKGRPVVLYKKKD 406
+ L+EIG+P +A +L VS V+ N + + C L LL K V R G+ + + K
Sbjct: 299 INLNEIGIPTDLALNLVVSEQVSFYNFETINLKCNLHLLTKEVLLVRRNGKLIFVRKANK 358
Query: 407 LQIGDLLYRPLTDGD 421
L+IGD+ YR L DGD
Sbjct: 359 LEIGDIAYRLLQDGD 373
>B8BED0_ORYSI (tr|B8BED0) DNA-directed RNA polymerase OS=Oryza sativa subsp.
indica GN=OsI_32338 PE=3 SV=1
Length = 1384
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 74/231 (32%), Positives = 122/231 (52%), Gaps = 21/231 (9%)
Query: 17 EHNMPSGVITAIKFDVLTGEDIRTISALEIEAAGQVVCSDLGLPNSSEVCTTCGTNDKKL 76
E MP + A+KF ++T D+ +S+ I V + LGLPN + C TCG+ +
Sbjct: 33 EVKMPEADLKAVKFSLMTSSDMEKLSSASIIEMCDVTNAKLGLPNGAPQCATCGSQSVRD 92
Query: 77 CEGHFGAIKFPFSIVHPYFISEAAEILNKICPACKSIRCDLLIKGVKFLSVDKKLNDCKY 136
C+GHFG IK ++ +P FI E ++LN+ICP C +++ + K ++ CKY
Sbjct: 93 CDGHFGVIKLAATVHNPCFIEEVVQLLNQICPGCLTLKQNGDTKKTDGTTIQ---TTCKY 149
Query: 137 CSGISMGRYPTMKFR--------VSYNNLSRSPEIISEINDTA---------SKKKTLGQ 179
CS YP++ F+ +S + L R+ ++ +I+ A SK K +
Sbjct: 150 CSKDGAKLYPSVIFKMLTSPRVTLSRSKLHRNTSVMDKISIIAEVAGGVTHNSKNKAPHE 209
Query: 180 RLAADYWDFIPNGSEEEESLVNRR-LSLSQVHHLLSDVDPDFIEKYVPRKS 229
L D+WDF+P+ ++ +S V ++ LS QV H+L ++DP+ I + RKS
Sbjct: 210 TLPQDFWDFVPDDNQPPQSNVAKKILSPYQVFHMLKNLDPELINQLYSRKS 260
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 81/135 (60%), Gaps = 8/135 (5%)
Query: 290 LSKLNPDKTPSNMFTELQQRKV-GENAC--NSSGLRWMKDVVLGKRNDCSFRTVVVGDPD 346
L L+P+ + +L RK GE+ ++ G +W+KD++L KR+D +FR+++VGDP
Sbjct: 244 LKNLDPE-----LINQLYSRKSDGEDPTSPDTYGTKWLKDIILSKRSDNAFRSIMVGDPK 298
Query: 347 LALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEKGHFKVCRKGRPVVLYKKKD 406
+ L+EIG+P +A +L VS V+ N + + C L LL K V R G+ + + K
Sbjct: 299 INLNEIGIPTDLALNLVVSEQVSFYNFETINLKCNLHLLTKEVLLVRRNGKLIFVRKANK 358
Query: 407 LQIGDLLYRPLTDGD 421
L+IGD+ YR L DGD
Sbjct: 359 LEIGDIAYRLLQDGD 373
>K4CP21_SOLLC (tr|K4CP21) DNA-directed RNA polymerase OS=Solanum lycopersicum
GN=Solyc08g080210.2 PE=3 SV=1
Length = 1206
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/162 (37%), Positives = 101/162 (62%), Gaps = 11/162 (6%)
Query: 260 FDDRTRACKKLVDFRGPAVELSSHVINSLSLSKLNPDKTPSNMFTELQQRKVGENACNSS 319
FD+ R +KL+DFRG A +LS V++ + +SK+ D++ N + ++
Sbjct: 3 FDESNRLYRKLIDFRGTANDLSMCVLDRIKVSKIRADRSVIN-----------DPNAPAT 51
Query: 320 GLRWMKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDC 379
GL+++K++VL KR + +FR VVVGDP++ L EIG+PC +AE+L ++ ++ N + + D
Sbjct: 52 GLKYVKELVLAKRTNHAFRMVVVGDPNIELGEIGIPCHVAENLHMAETLSLRNWERMTDL 111
Query: 380 CELRLLEKGHFKVCRKGRPVVLYKKKDLQIGDLLYRPLTDGD 421
C+L +L++G V R G V + LQ GD+++RPL DGD
Sbjct: 112 CDLMILQRGGILVRRNGVLVRISVMDGLQKGDIIHRPLVDGD 153
>C0JR67_MAIZE (tr|C0JR67) DNA-directed RNA polymerase OS=Zea mays PE=2 SV=1
Length = 186
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 97/182 (53%), Gaps = 13/182 (7%)
Query: 21 PSGVITAIKFDVLTGEDIRTISALEIEAAGQVVCSDLGLPNSSEVCTTCGTNDKKLCEGH 80
P ++ AIKFD++T D+ +S++ I V LGLPN S C TCG+ + C+GH
Sbjct: 8 PEAILNAIKFDLMTSTDMEKLSSMSIIEVSDVTSPKLGLPNGSLQCETCGSQRGRDCDGH 67
Query: 81 FGAIKFPFSIVHPYFISEAAEILNKICPACKSIRCDLLIKGVKFLSVDKKLNDCKYCSGI 140
FG K ++ +PYFI + LN+ICP C S R + K L +K CKYCS
Sbjct: 68 FGVTKLAATVHNPYFIDDVVHFLNRICPGCLSPREGI---DTKRLEREKVQATCKYCSKD 124
Query: 141 SMGRYPTMKFRVSYNNLSRSPEII---SEINDTASKKKTLGQRLAADYWDFIPNGSEEEE 197
YP++ F+ LS SP ++ S+++ AS + + + A+ D +PN S+ +
Sbjct: 125 GSKLYPSIVFK----TLS-SPRVLLFKSKLHRNASVMERIS--IVAEAADRMPNRSKGKG 177
Query: 198 SL 199
SL
Sbjct: 178 SL 179
>F2CUH7_HORVD (tr|F2CUH7) DNA-directed RNA polymerase OS=Hordeum vulgare var.
distichum PE=2 SV=1
Length = 220
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 98/211 (46%), Gaps = 22/211 (10%)
Query: 17 EHNMPSGVITAIKFDVLTGEDIRTISALEIEAAGQVVCSDLGLPNSSEVCTTCGTNDKKL 76
E +P+ + I FD++T ++ S+ I V + LGLPN + C TCG +
Sbjct: 7 EVGIPTVELRGITFDLMTNTEMEKSSSASIVEPSDVTSAKLGLPNGAPQCETCGAQTVRE 66
Query: 77 CEGHFGAIKFPFSIVHPYFISEAAEILNKICPACKSIRCDLLIKGVKFLSVDKKLNDCKY 136
C+GH G IK P ++++P+ E ++LN+ CP C + + + + K + CKY
Sbjct: 67 CDGHSGVIKLPATVLNPHLFEEVVQLLNQTCPGCHTPKQN---RDSKRSNGATSQATCKY 123
Query: 137 CSGISMGRYPTMKFRV---------------SYN---NLSRSPEIISEINDTASKKKTLG 178
CS +YP + F+ YN +S + E+ + D ++ +
Sbjct: 124 CSKDGTKQYPDVIFKALTSPRITLSKAKVQHDYNFMDKISITAEVAGRVTDKSNNNGSC- 182
Query: 179 QRLAADYWDFIPNGSEEEESLVNRRLSLSQV 209
+ L DYWDF+P+ + ++ LS QV
Sbjct: 183 EVLPLDYWDFVPHHHPPQSNMTKILLSPYQV 213
>I1NVI7_ORYGL (tr|I1NVI7) DNA-directed RNA polymerase OS=Oryza glaberrima PE=3
SV=1
Length = 1567
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 111/444 (25%), Positives = 188/444 (42%), Gaps = 81/444 (18%)
Query: 20 MPSGVITAIKFDVLTGEDI---RTISALE----IEAAGQVVCSD-LGLPNSSEVCTTCGT 71
+P I I + + E+I + ++ LE I Q++ + LGLP C +CG+
Sbjct: 15 IPEASIRRINLSITSNEEILKAQPVNELEKPIPITHQSQLLNNPYLGLPLQVGSCQSCGS 74
Query: 72 NDKKLCEGHFGAIKFPFSIVHPYFISEAAEILNKICPACKSI--RCDLLIKGVKFLSVDK 129
N + CEGHFG I+ P I HP ++E ++ILN IC C I R +KG KF S
Sbjct: 75 NAIEECEGHFGFIELPMPIFHPSHVTELSQILNLICLRCLKIKNRKKSTLKGSKFTS--- 131
Query: 130 KLNDCKYCSGISMGRYPTMKFRVSYNNLSRSPEIISEINDTASKKKTLGQRLAADYWDFI 189
C +C + P V +N +R E+ + I + L +W F+
Sbjct: 132 ----CSHCQELP----PLCVAEVKKSNGARGLELRAPIK----------KELEEGFWSFL 173
Query: 190 PN-GSEEEESLVNRRLSLSQVHHLLSDVDPDF-----IEKYVPRKSLLDLNYFPVTPNGH 243
GS + R L +V +++ + + + Y+P+ + L+Y V PN
Sbjct: 174 DQFGSCTRGTSHCRPLLPEEVQNIIKKIPEETRRWLSVRGYIPQDGFI-LSYLCVPPNCL 232
Query: 244 RVTE-FSHRPSNGPKLSFDDRTRACKKLVDFRGPAV------------ELSSHVINSLSL 290
RV+ + S + +A +K+ RG + +L V N ++L
Sbjct: 233 RVSNVLDGNTFSCSGTSTNLLRKALRKIQQIRGSRIGSSNIQVDQVADDLQVDVANYINL 292
Query: 291 ---SKLNPDKTPSNMFTELQQRKVGENACNSSGLRWMKDVVLGKRNDCSFRTVVVGDPDL 347
+K + D T ++ T +Q ++ MK + + K + S R V+ GDP +
Sbjct: 293 GGTTKGHGDDTFTSQPTAMQWKQK------------MKTLFISKSSSFSSRGVITGDPYI 340
Query: 348 ALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEKGHFKVCRKGRPVV--LYKKK 405
L+ +GVP ++A+ + V V N L D ++ KG + L K
Sbjct: 341 GLNVVGVPEEVAKRMSVEEKVTDHNIAQLQD-----MMNKGLCLTYTDANSITYSLDAGK 395
Query: 406 D--------LQIGDLLYRPLTDGD 421
D L++G+++ R + DGD
Sbjct: 396 DNPNKKHTILKVGEIVNRRVFDGD 419
>M0TPQ3_MUSAM (tr|M0TPQ3) DNA-directed RNA polymerase OS=Musa acuminata subsp.
malaccensis PE=3 SV=1
Length = 196
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 69/116 (59%), Gaps = 1/116 (0%)
Query: 15 FHEHNMPSGVITAIKFDVLTGEDIRTISALEIEAAGQVVCSDLGLPNSSEVCTTCGTNDK 74
HE ++ S + T I + ++ I + I A +V + LGLPN+S C TCG+ +
Sbjct: 5 IHETSVISNLTTFIAILNIC-VNLEKICNVNIVEANEVTSAKLGLPNASSQCATCGSRNI 63
Query: 75 KLCEGHFGAIKFPFSIVHPYFISEAAEILNKICPACKSIRCDLLIKGVKFLSVDKK 130
+ C+GH G +K P +I HP+F++E ILN+ICP CK+++ DL +KG L +K
Sbjct: 64 RDCDGHSGFVKLPKTIYHPFFVTEVVHILNQICPGCKTVKKDLKMKGSVILEASEK 119
>J3L9M9_ORYBR (tr|J3L9M9) DNA-directed RNA polymerase OS=Oryza brachyantha
GN=OB02G13460 PE=3 SV=1
Length = 2034
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 100/429 (23%), Positives = 176/429 (41%), Gaps = 57/429 (13%)
Query: 23 GVITAIKFDVLTGEDIR--TISALEIEAAGQVVCSDLGLPNSSEVCTTCGTNDKKLCEGH 80
G I +IK + T ++IR +I+ + Q+ LGLP + C +CG ++ CEGH
Sbjct: 54 GAIKSIKLSLATEDEIRIYSINDCPVTHPSQLGNPFLGLPLETGKCESCGASENGKCEGH 113
Query: 81 FGAIKFPFSIVHPYFISEAAEILNKICPACKSIRCDLLIKGVKFLSVDKKLN----DCKY 136
FG I+ P I HP ++E +ILN +C C L +K K + K N C Y
Sbjct: 114 FGYIELPVPIYHPCHVTELRQILNLVCFKC------LRVKKGKVKHTEGKDNTSALSCYY 167
Query: 137 CSGISMGRYPTMKFRVSYNNLSRSPEIISEINDTASKKKTLGQRLAADYWDFIPNGSEEE 196
C + P + + N + + E+ K T G D + F G+
Sbjct: 168 CRDL-----PALSLK---ENKTADGAVRLELKAPPRKFMTEGSWNFLDKYGFHHGGTSH- 218
Query: 197 ESLVNRRLSLSQVHHLLSDVDPDFIEKYVPRKSLLD----LNYFPVTPNGHRVTEFSHRP 252
R L + ++L + + K R + + Y PV PN + EF+
Sbjct: 219 ----CRTLLPEEALNILKKIPDETKRKLAARGYIAQPGYVMKYLPVPPNCLYIPEFTDGQ 274
Query: 253 SNGPKLSFDDRTRACKKLVD-------FRGPAVELSSHVINS----LSLSK-LNPDKTPS 300
S +S+D KK++ R + SH + S LS+++ ++ T
Sbjct: 275 S---IMSYDISISLLKKVLQKIEQIKKSRAGSPNFESHEVESSDLQLSIAQYIHLRGTTR 331
Query: 301 NMFTELQQRKVGENACNSSGLRW---MKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQ 357
++ + ++ S +W M+ + + K + S R+V+ GDP + + +G+P +
Sbjct: 332 GPQDNTKRFSISTDSSALSTKQWLEKMRTLFISKGSGFSSRSVLTGDPYIGVDMVGLPSE 391
Query: 358 IAESLQVSVYVNRENKKNLLDCCELRLLEKGHFKVCRKGRPVVLYK-----KKDLQIGDL 412
+A+ + V N L + +++KG R G+ L++G
Sbjct: 392 VAKRITFEEQVTNININKLQE-----IVDKGLCLTYRDGQATYAITVGSKGHTTLKVGQT 446
Query: 413 LYRPLTDGD 421
+ R + DGD
Sbjct: 447 ISRRIVDGD 455
>K3YP74_SETIT (tr|K3YP74) DNA-directed RNA polymerase OS=Setaria italica
GN=Si016066m.g PE=3 SV=1
Length = 2050
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 105/426 (24%), Positives = 176/426 (41%), Gaps = 50/426 (11%)
Query: 23 GVITAIKFDVLTGEDIRTISALE--IEAAGQVVCSDLGLPNSSEVCTTCGTNDKKLCEGH 80
G I +IK + T E+I T S + + Q+ LGLP + C CG ++ CEGH
Sbjct: 13 GAIKSIKLSLSTEEEICTYSINDCPVNHPSQLANPFLGLPLEAGKCEACGASENDKCEGH 72
Query: 81 FGAIKFPFSIVHPYFISEAAEILNKICPACKSIRCDLLIKGVKFLSVDKKLNDCKYCSGI 140
FG I+ P I HP ISE ++L+ IC C I+ + K + L+ C YC I
Sbjct: 73 FGYIELPVPIYHPCHISELRQLLSLICFKCLRIKKGKVNKQNGKETASATLS-CYYCRDI 131
Query: 141 SMGRYPTMKFRVSYNNLSRSPEIISEINDTASKKKTLGQRLAADYWDFIPN-GSEEEESL 199
P + + +++ + + A +K + +R W+F+ G S
Sbjct: 132 -----PALSLKE-----TKTTDGAIRLELRAPPRKHMTER----SWNFLDKYGFHYGGSA 177
Query: 200 VNRRLSLSQVHHLLSDVDPDFIEKYVPR----KSLLDLNYFPVTPNGHRVTEFSHRPSNG 255
+R L + ++L V D K R +S + Y PV PN + EF+ S
Sbjct: 178 HSRLLLPEEALNILKKVPDDTRRKLAARGYTVQSGYVMKYLPVPPNCLYIPEFTDGQS-- 235
Query: 256 PKLSFDDRTRACKKLVD-------FRGPAVELSSHVINSLSL-----SKLNPDKTPSNMF 303
+S+D KK++ R + SH S + ++ T
Sbjct: 236 -IMSYDISIALLKKVLQKIEQIKRSRSGSPNFESHEEESCDIQLAVGQYIHLRGTTRGPQ 294
Query: 304 TELQQRKVGENACNSSGLRW---MKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAE 360
++ VG + S +W M+ + + K + S R+V+ GDP + + IG+P ++A+
Sbjct: 295 DNSKRFAVGTDTAALSTKQWLEKMRTLFISKGSGFSSRSVLTGDPYIGVDVIGLPSEVAK 354
Query: 361 SLQVSVYVNRENKKNLLDCCELRLLEKGHFKVCRKGR-----PVVLYKKKDLQIGDLLYR 415
+ V N L + +++KG R G+ V L++G + R
Sbjct: 355 RITFEEQVTDININRLQE-----VVDKGLCLTYRDGKDTYAITVGSKGHTTLKVGQTISR 409
Query: 416 PLTDGD 421
+ DGD
Sbjct: 410 RIVDGD 415
>Q0E3V3_ORYSJ (tr|Q0E3V3) DNA-directed RNA polymerase (Fragment) OS=Oryza sativa
subsp. japonica GN=Os02g0152800 PE=2 SV=1
Length = 488
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 102/430 (23%), Positives = 176/430 (40%), Gaps = 59/430 (13%)
Query: 23 GVITAIKFDVLTGEDIRT--ISALEIEAAGQVVCSDLGLPNSSEVCTTCGTNDKKLCEGH 80
G I +IK + T ++IRT I+ + Q+ LGLP + C +CG ++ CEGH
Sbjct: 13 GAIKSIKLSLSTEDEIRTYSINDCPVTHPSQLGNPFLGLPLETGKCESCGASENGKCEGH 72
Query: 81 FGAIKFPFSIVHPYFISEAAEILNKICPACKSIRCDLLIKGVKFLSVDKKLN----DCKY 136
FG I+ P I HP ++E +ILN +C C L +K K + K N C Y
Sbjct: 73 FGYIELPVPIYHPCHVTELRQILNVVCLKC------LRVKKGKVKQTEGKDNTSALSCYY 126
Query: 137 CS---GISMGRYPTM--KFRVSYNNLSRSPEIISEINDTASKKKTLGQRLAADYWDFIPN 191
C +S+ T FR+ E+ K T G D + F
Sbjct: 127 CRDLPALSLKEIKTADGAFRL-------------ELKMPPRKFMTEGSWNFLDKYGFHHG 173
Query: 192 GSEEEESLVNRRLSLSQVHHLLSDVDPDFIEKYVPRKSLLDLNYFPVTPNGHRVTEFSHR 251
G+ +L+ +L+ + + + + +S + Y PV PN + EF+
Sbjct: 174 GTSHCRTLLPEE-ALNILKKIPEETKRKLAARGYIAQSGYVMKYLPVPPNCLYIPEFTDG 232
Query: 252 PSNGPKLSFDDRTRACKKLVD-------FRGPAVELSSHVINS----LSLSK-LNPDKTP 299
S +S+D KK++ R + SH + S LS+++ ++ T
Sbjct: 233 QS---IMSYDISISLLKKVLQKIEQIKKSRAGSPNFESHEVESCDLQLSIAQYIHLRGTT 289
Query: 300 SNMFTELQQRKVGENACNSSGLRW---MKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPC 356
++ + + S +W M+ + + K + S R+V+ GDP + + IG+P
Sbjct: 290 RGPQDNTKRFAISTDPSALSTKQWLEKMRTLFISKGSGFSSRSVLTGDPYIGVDVIGLPS 349
Query: 357 QIAESLQVSVYVNRENKKNLLDCCELRLLEKGHFKVCRKGRPVVLYK-----KKDLQIGD 411
++A+ + V N L + +++KG R G+ L++G
Sbjct: 350 EVAKRITFEEQVTDINLNRLQE-----IVDKGLCLTYRDGQATYAITVGSKGHTTLKVGQ 404
Query: 412 LLYRPLTDGD 421
+ R + DGD
Sbjct: 405 TISRRIVDGD 414
>I1NXC6_ORYGL (tr|I1NXC6) DNA-directed RNA polymerase OS=Oryza glaberrima PE=3
SV=1
Length = 1630
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 102/430 (23%), Positives = 176/430 (40%), Gaps = 59/430 (13%)
Query: 23 GVITAIKFDVLTGEDIRTISALE--IEAAGQVVCSDLGLPNSSEVCTTCGTNDKKLCEGH 80
G I +IK + T ++IRT S + + Q+ LGLP + C +CG ++ CEGH
Sbjct: 13 GAIKSIKLSLSTEDEIRTYSINDCPVTHPSQLGNPFLGLPLETGKCESCGASENGKCEGH 72
Query: 81 FGAIKFPFSIVHPYFISEAAEILNKICPACKSIRCDLLIKGVKFLSVDKKLN----DCKY 136
FG I+ P I HP ++E +ILN +C C L +K K + K N C Y
Sbjct: 73 FGYIELPVPIYHPCHVTELRQILNVVCLKC------LRVKKGKVKQTEGKDNTSALSCYY 126
Query: 137 CS---GISMGRYPTM--KFRVSYNNLSRSPEIISEINDTASKKKTLGQRLAADYWDFIPN 191
C +S+ T FR+ E+ K T G D + F
Sbjct: 127 CRDLPALSLKEIKTADGAFRL-------------ELKMPPRKFMTEGSWNFLDKYGFHHG 173
Query: 192 GSEEEESLVNRRLSLSQVHHLLSDVDPDFIEKYVPRKSLLDLNYFPVTPNGHRVTEFSHR 251
G+ +L+ +L+ + + + + +S + Y PV PN + EF+
Sbjct: 174 GTSHCRTLLPEE-ALNILKKIPEETKRKLAARGYIAQSGYVMKYLPVPPNCLYIPEFTDG 232
Query: 252 PSNGPKLSFDDRTRACKKLVD-------FRGPAVELSSHVINS----LSLSK-LNPDKTP 299
S +S+D KK++ R + SH + S LS+++ ++ T
Sbjct: 233 QS---IMSYDISISLLKKVLQKIEQIKKSRAGSPNFESHEVESCDLQLSIAQYIHLRGTT 289
Query: 300 SNMFTELQQRKVGENACNSSGLRW---MKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPC 356
++ + + S +W M+ + + K + S R+V+ GDP + + IG+P
Sbjct: 290 RGPQDNTKRFAISTDPSALSTKQWLEKMRTLFISKGSGFSSRSVLTGDPYIGVDVIGLPS 349
Query: 357 QIAESLQVSVYVNRENKKNLLDCCELRLLEKGHFKVCRKGRPVVLYK-----KKDLQIGD 411
++A+ + V N L + +++KG R G+ L++G
Sbjct: 350 EVAKRITFEEQVTDINLNRLQE-----IVDKGLCLTYRDGQATYAITVGSKGHTTLKVGQ 404
Query: 412 LLYRPLTDGD 421
+ R + DGD
Sbjct: 405 TISRRIVDGD 414
>M0WRB9_HORVD (tr|M0WRB9) DNA-directed RNA polymerase OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 1139
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 102/429 (23%), Positives = 180/429 (41%), Gaps = 58/429 (13%)
Query: 23 GVITAIKFDVLTGEDIRT--ISALEIEAAGQVVCSDLGLPNSSEVCTTCGTNDKKLCEGH 80
G I +IK + T +I T I+ + Q+ LGLP + C +CG + CEGH
Sbjct: 14 GAIKSIKLSLSTENEICTYSINDCPVTHPSQLGNPFLGLPLETGKCESCGATENGKCEGH 73
Query: 81 FGAIKFPFSIVHPYFISEAAEILNKICPACKSIRCDLLIKGVKFLSVDKKLN----DCKY 136
FG I+ P + HP +SE ++L+ +C C L IK K + K N C Y
Sbjct: 74 FGFIELPVPVYHPCHVSELRQLLSMVCLQC------LRIKKGKVKQTNGKENFSVTACHY 127
Query: 137 CSGISMGRYPTMKFRVSYNNLSRSPEIISEINDTASKKKTLGQRLAADYWDFIPN-GSEE 195
C G+ P + Y ++ + + A KK + +R WDF+ G
Sbjct: 128 CRGL-----PAL-----YLKEIKTADGAFRLELRAPPKKHMTER----SWDFLGKYGFRY 173
Query: 196 EESLVNRRLSLSQVHHLLSDVDPDFIEKYVPRKSLLD----LNYFPVTPNGHRVTEFSHR 251
+ +R L + ++L + D +K R + + Y PV PN + EF+
Sbjct: 174 GGASHSRTLLPEEALNILKKIPDDTKKKLAARGYIAQPGYVMKYLPVPPNCLYIPEFTDG 233
Query: 252 PSNGPKLSFDDRTRACKKLVD-------FRGPAVELSSHVINS----LSLSKLNPDKTPS 300
S +S+D KK++ R + S+ S LS+ + + +
Sbjct: 234 QS---IMSYDISISLLKKILQKIEQIKKSRSGSPNFESNDSESTDLQLSIGQYIQLRGTT 290
Query: 301 NMFTELQQRKVGENACNSSGLRW---MKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQ 357
+ ++ V ++ + S +W M+ + + K + S R+V+ GDP + +G+P +
Sbjct: 291 KGPQDAKRFSVSTDSSHLSTKQWLEKMRTLFISKGSGFSSRSVLTGDPYIGADVVGLPSE 350
Query: 358 IAESLQVSVYVNRENKKNLLDCCELRLLEKGHFKVCRKGR---PVVLYKK--KDLQIGDL 412
+A+ + V N L + +++KG R G+ + + K L++G
Sbjct: 351 VAKRITFEEQVTDTNLNRLQE-----VVDKGLCLTYRDGQTTYAITVGSKGYTTLKVGQT 405
Query: 413 LYRPLTDGD 421
+ R + DGD
Sbjct: 406 ISRRIVDGD 414
>C5XJ93_SORBI (tr|C5XJ93) DNA-directed RNA polymerase (Fragment) OS=Sorghum
bicolor GN=Sb03g046922 PE=3 SV=1
Length = 1571
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 108/452 (23%), Positives = 172/452 (38%), Gaps = 77/452 (17%)
Query: 10 DDNDKFHEHNMPSGVITAIKFDVLTGEDIRTISAL-------EIEAAGQVVCS-DLGLP- 60
DD+ +P I +K V + ++I + S L I Q+ + LGLP
Sbjct: 3 DDDPAAAGLTVPEAFIRRVKLSVTSNQEIVSTSPLFPSQDPIPITHCSQLQDNPSLGLPL 62
Query: 61 NSSEVCTTCGTNDKKLCEGHFGAIKFPFSIVHPYFISEAAEILNKICPACKSIRCDLLIK 120
C +CG C+GHFG IK P I HP I+E +ILN +C +RC L K
Sbjct: 63 QDGSTCESCGATQLDKCDGHFGFIKLPEPIYHPSHIAELGKILNLVC-----LRCLRLKK 117
Query: 121 GVKFLSVDKKLNDCKYCSGISMGRYPTMKFRVSYNNLSRSPEIISEINDTASKKKTLGQR 180
K + + C YC +S P +V +N +RS E+ K L Q
Sbjct: 118 PKKVTGKESRFTSCSYCQELS----PLCVSQVKKSNGARSLEL----------KLPLKQE 163
Query: 181 LAADYWDFIPNGSEEEESLVNRR-LSLSQVHHLLSDVDPDFIEKYVPRKSLLD----LNY 235
+A +W F+ +RR L +V ++ + + R L ++
Sbjct: 164 VADGFWSFLDQFGFHTSGTSHRRPLHPKEVQDIMKKITEKTRARLAARGYNLQDGFVMDN 223
Query: 236 FPVTPNGHRVTEFSHRPSNGPKLSFDDRTRACKKLVDFRGPAVELSSHVINSLSLSKLNP 295
+ PN +++ D+ T C V + I SL++S +P
Sbjct: 224 MSIPPNCLQISNM-----------LDENTEMCPPTSKGLLHKVLRTIEQIESLNIS--HP 270
Query: 296 DKTPSNMFTELQQRKVGENACNSSGL----------------RW---MKDVVLGKRNDCS 336
+ + + Q V + N G +W MK + L K + +
Sbjct: 271 NIEARELGADDLQVAVADYM-NMGGAAKVSQHVTFTRQPAPKQWHKKMKTLFLSKSSSYT 329
Query: 337 FRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLD------CCELRLLEKGHF 390
R V+ GDP + L +GVP +IA + V V N L D C L +
Sbjct: 330 CRAVITGDPYIGLDVVGVPDEIARRMSVQECVTNYNIARLQDMMNKGLCLTYTDLNTNTY 389
Query: 391 KV-CRKGRPVVLYKKKDLQIGDLLYRPLTDGD 421
+ +KG + L++G+ + R + DGD
Sbjct: 390 DLDGKKGNKKCIM----LRVGETVDRRVLDGD 417
>B9F2S6_ORYSJ (tr|B9F2S6) DNA-directed RNA polymerase OS=Oryza sativa subsp.
japonica GN=OsJ_05410 PE=2 SV=1
Length = 2017
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 102/430 (23%), Positives = 176/430 (40%), Gaps = 59/430 (13%)
Query: 23 GVITAIKFDVLTGEDIRTISALE--IEAAGQVVCSDLGLPNSSEVCTTCGTNDKKLCEGH 80
G I +IK + T ++IRT S + + Q+ LGLP + C +CG ++ CEGH
Sbjct: 13 GAIKSIKLSLSTEDEIRTYSINDCPVTHPSQLGNPFLGLPLETGKCESCGASENGKCEGH 72
Query: 81 FGAIKFPFSIVHPYFISEAAEILNKICPACKSIRCDLLIKGVKFLSVDKKLN----DCKY 136
FG I+ P I HP ++E +ILN +C C L +K K + K N C Y
Sbjct: 73 FGYIELPVPIYHPCHVTELRQILNVVCLKC------LRVKKGKVKQTEGKDNTSALSCYY 126
Query: 137 CS---GISMGRYPTM--KFRVSYNNLSRSPEIISEINDTASKKKTLGQRLAADYWDFIPN 191
C +S+ T FR+ E+ K T G D + F
Sbjct: 127 CRDLPALSLKEIKTADGAFRL-------------ELKMPPRKFMTEGSWNFLDKYGFHHG 173
Query: 192 GSEEEESLVNRRLSLSQVHHLLSDVDPDFIEKYVPRKSLLDLNYFPVTPNGHRVTEFSHR 251
G+ +L+ +L+ + + + + +S + Y PV PN + EF+
Sbjct: 174 GTSHCRTLLPEE-ALNILKKIPEETKRKLAARGYIAQSGYVMKYLPVPPNCLYIPEFTDG 232
Query: 252 PSNGPKLSFDDRTRACKKLVD-------FRGPAVELSSHVINS----LSLSK-LNPDKTP 299
S +S+D KK++ R + SH + S LS+++ ++ T
Sbjct: 233 QS---IMSYDISISLLKKVLQKIEQIKKSRAGSPNFESHEVESCDLQLSIAQYIHLRGTT 289
Query: 300 SNMFTELQQRKVGENACNSSGLRW---MKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPC 356
++ + + S +W M+ + + K + S R+V+ GDP + + IG+P
Sbjct: 290 RGPQDNTKRFAISTDPSALSTKQWLEKMRTLFISKGSGFSSRSVLTGDPYIGVDVIGLPS 349
Query: 357 QIAESLQVSVYVNRENKKNLLDCCELRLLEKGHFKVCRKGRPVVLYK-----KKDLQIGD 411
++A+ + V N L + +++KG R G+ L++G
Sbjct: 350 EVAKRITFEEQVTDINLNRLQE-----IVDKGLCLTYRDGQATYAITVGSKGHTTLKVGQ 404
Query: 412 LLYRPLTDGD 421
+ R + DGD
Sbjct: 405 TISRRIVDGD 414
>B9GWX9_POPTR (tr|B9GWX9) DNA-directed RNA polymerase OS=Populus trichocarpa
GN=NRPD903 PE=3 SV=1
Length = 924
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 110/447 (24%), Positives = 182/447 (40%), Gaps = 71/447 (15%)
Query: 9 MDDNDKFHEHNMPSGVITAIKFDVLTGEDIRT--ISALEIEAAGQVVCSDLGLPNSSEVC 66
MD+N + ++ G IT I+F + T ++I T IS I + Q+ LGLP C
Sbjct: 1 MDENS---QSSIFDGEITGIRFGLATQKEICTASISDCPISHSSQLTNPFLGLPLEFGKC 57
Query: 67 TTCGTNDKKLCEGHFGAIKFPFSIVHPYFISEAAEILNKICPACKSI-RCDLLIK--GVK 123
+CGT++ CEGHFG I P I HP ISE +L+ IC C + R + IK GV
Sbjct: 58 ESCGTSEPGKCEGHFGFIHLPIPIYHPSHISELKRMLSLICLKCLKLKRNKIQIKSNGV- 116
Query: 124 FLSVDKKLNDCKYCSGISMGRYPTMKFRVSYNNLSRSPEIISEINDTASK-----KKTLG 178
++ L+ C+ C+ IS I E+ +T K
Sbjct: 117 ---AERLLSCCEECAQIS----------------------IREVKNTDGACFLELKLPSR 151
Query: 179 QRLAADYWDFIPNGSEEEESLVNRRLSLSQVHHLLSDVDPDFIEK-----YVPRKSLLDL 233
RL W+F+ R L +V +L + + +K Y P+ + L
Sbjct: 152 SRLRDGCWNFLERYGFRYGDDFTRPLLPCEVMQILKRIPAETRKKLSGKGYFPQDGYI-L 210
Query: 234 NYFPVTPNGHRVTEFSHRPSNGPKLSFDDRTRACKKLV-------DFRGPAVELSSHVIN 286
PV PN V S + +S D KK++ R A +H
Sbjct: 211 QQLPVPPNCLSVPVVSDGIT---VMSSDLSISMLKKVLKQAEVIRSSRSGAPNFDAHKDE 267
Query: 287 SLSLSKL--------NPDKTPSNMFTELQQRKVGENACNSSGLRWMKDVVLGKRNDCSFR 338
+ SL + KT ++ T +K + + L M+ + + K + S R
Sbjct: 268 ATSLQSMVDQYLQVRGTTKTSRDVDTRYGVKKESSESTTKAWLEKMRTLFIRKGSGFSSR 327
Query: 339 TVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLL----EKGHFKVCR 394
+V+ GD ++++G+P +IA+ + V+ N + L + + +L + R
Sbjct: 328 SVITGDAYTLVNQVGIPYEIAQRITFEERVSVHNMRYLQELVDNKLCLTYKDGSSTYSLR 387
Query: 395 KGRPVVLYKKKDLQIGDLLYRPLTDGD 421
+G + L+ G +++R + DGD
Sbjct: 388 EGSKGHTF----LRPGQVVHRRIMDGD 410
>I1IV91_BRADI (tr|I1IV91) DNA-directed RNA polymerase OS=Brachypodium distachyon
GN=BRADI4G45065 PE=3 SV=1
Length = 1954
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 104/434 (23%), Positives = 184/434 (42%), Gaps = 68/434 (15%)
Query: 23 GVITAIKFDVLTGEDIRTISALE--IEAAGQVVCSDLGLPNSSEVCTTCGTNDKKLCEGH 80
G I +IK + T ++I T S + + Q+ LGLP + C +CG ++ CEGH
Sbjct: 13 GAIKSIKLSLSTEDEILTYSINDCPVTHPSQLGNPFLGLPLETGKCESCGASENGKCEGH 72
Query: 81 FGAIKFPFSIVHPYFISEAAEILNKICPACKSIRCDLLIKGVKFLSVDKK---LNDCKYC 137
FG I+ P I HP +SE ++L+ +C C I+ KG S K+ + C YC
Sbjct: 73 FGYIELPVPIYHPCHVSELRQLLSLVCLKCLRIK-----KGKAKQSNGKENVSVTACSYC 127
Query: 138 S---GISMGRYPTM--KFRVSYNNLSRSPEIISEINDTASKKKTLGQRLAAD-YWDFIPN 191
+S+ T FR+ R+P +RL D W+F+
Sbjct: 128 RDVPALSLKEVKTADGAFRLEL----RAPP----------------RRLMKDSSWNFLDK 167
Query: 192 -GSEEEESLVNRRLSLSQVHHLLSDVDPDFIEKYVPR----KSLLDLNYFPVTPNGHRVT 246
G + R L + ++L + D +K R +S + Y PV PN +
Sbjct: 168 YGFHHGGASHFRTLLPEEALNILKKIPDDTRKKLAARGYIAQSGYVMKYLPVPPNCLYIP 227
Query: 247 EFSHRPSNGPKLSFDDRTRACKKLV-------DFRGPAVELSSHVINS----LSLSKLNP 295
EF+ S +S+D KK++ R SH S +S+++
Sbjct: 228 EFTDGQS---IMSYDISISLLKKILHRIEQIKKSRAGTPNFESHEAESSDLQISIAQYIH 284
Query: 296 DKTPSNMFTELQQRKVGENACNSSGLRW---MKDVVLGKRNDCSFRTVVVGDPDLALSEI 352
+ + + ++ + ++ + S +W M+ + + K + S R+V+ GDP + + +
Sbjct: 285 LRGTTKGPQDTKRFTISTDSSHLSTKQWLEKMRTLFISKGSGFSSRSVLTGDPYIGVDVV 344
Query: 353 GVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEKGHFKVCRKGR---PVVLYKK--KDL 407
G+P ++A+ + V N K L + +++KG R G+ + + K L
Sbjct: 345 GLPSEVAKRITFEEQVTDINIKRLQE-----VVDKGLCLTYRDGQTTYAITVGSKGYTTL 399
Query: 408 QIGDLLYRPLTDGD 421
++G + R + DGD
Sbjct: 400 KVGQTISRRIVDGD 413
>B8AHU1_ORYSI (tr|B8AHU1) DNA-directed RNA polymerase OS=Oryza sativa subsp.
indica GN=OsI_05888 PE=3 SV=1
Length = 1867
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 105/434 (24%), Positives = 176/434 (40%), Gaps = 67/434 (15%)
Query: 23 GVITAIKFDVLTGEDIRTISALE--IEAAGQVVCSDLGLPNSSEVCTTCGTNDKKLCEGH 80
G I +IK + T ++IRT S + + Q+ LGLP + C +CG ++ CEGH
Sbjct: 13 GAIKSIKLSLSTEDEIRTYSINDCPVTHPSQLGNPFLGLPLETGKCESCGASENGKCEGH 72
Query: 81 FGAIKFPFSIVHPYFISEAAEILNKICPACKSIRCDLLIKGVKFLSVDKKLN----DCKY 136
FG I+ P I HP ++E +ILN +C C L +K K + K N C Y
Sbjct: 73 FGYIELPVPIYHPCHVTELRQILNVVCLKC------LRVKKGKVKQTEGKDNTSALSCYY 126
Query: 137 CS---GISMGRYPTM--KFRVSYNNLSRSPEIISEINDTASKKKTLGQRLAADYWDFIPN 191
C +S+ T FR+ E+ K T G D + F
Sbjct: 127 CRDLPALSLKEIKTADGAFRL-------------ELKMPPRKFMTEGSWNFLDKYGFHHG 173
Query: 192 GSEEEESLVNRRLSLSQVHHLLSDVDPDFIEKYVPR----KSLLDLNYFPVTPNGHRVTE 247
G+ R L + ++L + + K R +S + Y PV PN + E
Sbjct: 174 GTSH-----CRTLLPEEALNILKKIPEETKRKLAARGYIAQSGYVMKYLPVPPNCLYIPE 228
Query: 248 FSHRPSNGPKLSFDDRTRACKKLVD-------FRGPAVELSSHVINS----LSLSK-LNP 295
F+ S +S+D KK++ R + SH + S LS+++ ++
Sbjct: 229 FTDGQS---IMSYDISISLLKKVLQKIEQIKKSRAGSPNFESHEVESCDLQLSIAQYIHL 285
Query: 296 DKTPSNMFTELQQRKVGENACNSSGLRW---MKDVVLGKRNDCSFRTVVVGDPDLALSEI 352
T ++ + + S +W M+ + + K + S R+V+ GDP + + I
Sbjct: 286 RGTTRGPQDNTKRFAISTDPSALSTKQWLEKMRTLFISKGSGFSSRSVLTGDPYIGVDVI 345
Query: 353 GVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEKGHFKVCRKGRPVVLYK-----KKDL 407
G+P ++A+ + V N L + +++KG R G+ L
Sbjct: 346 GLPSEVAKRITFEEQVTDINLNRLQE-----IVDKGLCLTYRDGQATYAITVGSKGHTTL 400
Query: 408 QIGDLLYRPLTDGD 421
++G + R + DGD
Sbjct: 401 KVGQTISRRIVDGD 414
>M0VV70_HORVD (tr|M0VV70) DNA-directed RNA polymerase OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 682
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 61/101 (60%)
Query: 321 LRWMKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCC 380
++W+KD +L KR+D +FR +VGDP + L EIG+P +A +L VS +VN N ++ C
Sbjct: 1 MKWLKDAILSKRSDNAFRGTMVGDPKIRLHEIGIPVDLASNLVVSEHVNSYNFDSINSKC 60
Query: 381 ELRLLEKGHFKVCRKGRPVVLYKKKDLQIGDLLYRPLTDGD 421
LL + R G+ +++ K L IGD ++R L DGD
Sbjct: 61 NHYLLANEVLVIKRSGKTILVRKPNQLVIGDTVHRLLQDGD 101
>A8MAA2_CALMQ (tr|A8MAA2) DNA-directed RNA polymerase OS=Caldivirga
maquilingensis (strain ATCC 700844 / DSM 13496 / JCM
10307 / IC-167) GN=Cmaq_0185 PE=3 SV=1
Length = 889
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 114/464 (24%), Positives = 180/464 (38%), Gaps = 94/464 (20%)
Query: 12 NDKFHEHNMPSGVITAIKFDVLTGEDIRTISALEIEAA-----------GQVVCSDLGLP 60
N E N+P VI I F+VL+ + IR +S +E+ + G ++ LG+
Sbjct: 5 NQGSGEDNIPLKVIKEISFNVLSPDLIRKMSVMEVTTSETYDEAGNPVKGGLMDRRLGVD 64
Query: 61 NSSEVCTTCGTNDKKLCEGHFGAIKFPFSIVHPYFISEAAEILNKICPACKSIRCDLLIK 120
C TCG ND + C GHFG I+ +VHP F+ +IL CP C +
Sbjct: 65 EPEARCETCG-NDWRRCPGHFGRIELVRPVVHPEFVKPIYDILRATCPNCGRL------- 116
Query: 121 GVKFLSVDKKLNDCKYCSGISMGRYPTMKFRVSYNNLSRSPEIISEINDTASKKKTLGQ- 179
KL D +Y RY R+ + + S +I + A+ + T
Sbjct: 117 ---------KLTDEEY------KRYSERIKRLKKHWRALSDRLILRVKKKAAARSTCPHC 161
Query: 180 -------RLAADYWDFIPNGSEEEESLVNRRLSLSQVHHLLSDVDPDFIE-----KYVPR 227
RL + + +E E+ + RL + L V D +E R
Sbjct: 162 GAPQPKIRLDKPFKFY----TESEDGRLT-RLDPVSIREWLEKVPDDDLELLGWNPSTAR 216
Query: 228 KSLLDLNYFPVTPNGHRVTEFSHRPSNGPKLSFDDRTRACKKLVDFRGP---AVELSSHV 284
L PV P +V PS + S DD T A ++ + A+E S
Sbjct: 217 PEWAVLTVLPVPPP--QVRPSIQLPSG--QTSADDLTHALTTILRYNEKLRNAIESGSPT 272
Query: 285 INSLSLSKLNPDKTPSNMFTELQQRKVGENACNSSGLRWMKDV--------------VLG 330
+ L L D +N+ T + G R +K + + G
Sbjct: 273 TSILDLW----DSLQANVATYIDNELPGGIQARHRSKRPLKGIAQRLKGKEGRFRGSLSG 328
Query: 331 KRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLE---- 386
KR + S RTV+ DP+L+++E+GVP IA+ L V V N +D + ++
Sbjct: 329 KRVEFSARTVISPDPNLSINEVGVPIDIAKELTVVEPVTEWN----IDLMRMLVVNGPET 384
Query: 387 --KGHFKVCRKGRPVVLYKKKD-------LQIGDLLYRPLTDGD 421
+ + G+ + L ++D +Q G ++ R L DGD
Sbjct: 385 WPGANRVITPDGKKIELKVRRDRSELAQQIQPGWMIERHLMDGD 428
>Q1L5X6_SOLLC (tr|Q1L5X6) DNA-directed RNA polymerase (Fragment) OS=Solanum
lycopersicum GN=RPD1 PE=2 SV=1
Length = 1138
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 56/85 (65%)
Query: 337 FRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEKGHFKVCRKG 396
FRTVVVGDP++ L EIG+PC AE+L ++ ++ N + + D C+L +L++G V R G
Sbjct: 1 FRTVVVGDPNIELGEIGIPCXXAENLHMAETLSLRNWERMTDLCDLMILQRGGILVRRNG 60
Query: 397 RPVVLYKKKDLQIGDLLYRPLTDGD 421
V + LQ GD+++RPL DGD
Sbjct: 61 VLVRISVMDGLQKGDIIHRPLVDGD 85
>K3Y4N1_SETIT (tr|K3Y4N1) DNA-directed RNA polymerase OS=Setaria italica
GN=Si009169m.g PE=3 SV=1
Length = 1546
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 112/457 (24%), Positives = 174/457 (38%), Gaps = 106/457 (23%)
Query: 19 NMPSGVITAIKFDVLTGEDIRTISALEIEAAGQVV----------CSDLGLPNSSEVCTT 68
+P G I IK V++ E+I A ++A G+ LGLP C +
Sbjct: 15 TIPEGCIRRIKLSVVSNEEI----AQPVDAQGKPFPITHGSQLQDNPSLGLPLQVGSCES 70
Query: 69 CGTNDKKLCEGHFGAIKFPFSIVHPYFISEAAEILNKICPACKSIRCDLLIKGVKFLSVD 128
CG CEGHFG I+ P I HP ++E +ILN IC C ++ K +
Sbjct: 71 CGATQLDRCEGHFGFIELPAPIYHPSHVAELGKILNIICLCCLRLK----KPNEKGTGKE 126
Query: 129 KKLNDCKYCSGISMGRYPTMKFRVSYNNLSRSPEIISEINDTASKKKTLGQRLAADYWDF 188
+K + C YC I P +V +N +RS E+ K L + + +W F
Sbjct: 127 RKFSSCSYCQDIP----PLCVTQVKKSNGARSLEL----------KAPLKEEVGDGFWSF 172
Query: 189 IPNGSEEEESLVNRR-LSLSQVHHLLSDVDPD---------------FIEKY--VPR--- 227
+ +RR L +V +++ + F+ Y VP
Sbjct: 173 LDQFGFHTILTSHRRPLHPKEVQNIMEKISKQTKIRLAARGYNLQNGFVMSYMCVPPNCL 232
Query: 228 --KSLLDLN---YFPVTPNG-----HRVTE------FSHRPSNGPKLSFDDRTRACKKLV 271
+LLD N Y P T G R+ E SH ++ DD A +
Sbjct: 233 HISNLLDDNTDMYPPDTSKGLLQKVLRIIEQIKSSSISHPNFEACEVGEDDLQVAVADYI 292
Query: 272 DFRGPAVELSSHVINSLSLSKLNPDKTPSNMFTELQQRKVGENACNSSGLRWMKDVVLGK 331
+ G A S++ S+ K + QQR MK + + K
Sbjct: 293 NMGGTA-----KGTQSVTFSRQPAPK-------QWQQR--------------MKALFISK 326
Query: 332 RNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNL---LD---CCELRLL 385
+ + R V+ GDP + L +GVP ++A + V +V N L +D C +
Sbjct: 327 SSSFTCRAVITGDPYIGLDVVGVPNEVASRMSVEEHVTDYNIARLQYMMDKGLCLTYTDV 386
Query: 386 EKGHFKVC-RKGRPVVLYKKKDLQIGDLLYRPLTDGD 421
+ + KGR K L++G+ + R + DGD
Sbjct: 387 NSNTYDLSGEKGRK----KHTMLRVGETVDRRVLDGD 419
>F6I5R3_VITVI (tr|F6I5R3) DNA-directed RNA polymerase OS=Vitis vinifera
GN=VIT_13s0067g03120 PE=3 SV=1
Length = 996
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 108/426 (25%), Positives = 173/426 (40%), Gaps = 55/426 (12%)
Query: 23 GVITAIKFDVLTGEDI--RTISALEIEAAGQVVCSDLGLPNSSEVCTTCGTNDKKLCEGH 80
G I+ I+F + T ++I ++S I A Q+ LGLP C +CGT + CEGH
Sbjct: 11 GEISGIRFGLATRQEICIASVSDCPISHASQLTNPFLGLPLEFGKCESCGTAEPGQCEGH 70
Query: 81 FGAIKFPFSIVHPYFISEAAEILNKICPACKSIR-CDLLIKGVKFLSVDKKLNDCKYCSG 139
FG I+ P I HP +SE +L+ +C C IR + G+ ++ L C C
Sbjct: 71 FGYIELPIPIYHPGHVSELKRMLSLLCLKCLKIRKSKVTNNGI----TEQLLAPC--CQ- 123
Query: 140 ISMGRYPTMKFRVSYNNLSRSPEIISEINDTASKKKTLGQRLAADYWDFIPNGSEEEESL 199
+ +FR + +I S R +WDF+
Sbjct: 124 -DSPQVSVREFRPTEGACFLELKIPSR------------SRPKDGFWDFLARYGYRYGHN 170
Query: 200 VNRRLSLSQVHHLLSDVDPDFIEK-----YVPRKSLLDLNYFPVTPNGHRVTEFSHRPS- 253
++R L S+V +L + D +K Y P+ + L Y PV PN V + S S
Sbjct: 171 LSRILLPSEVMEILRRIPEDTRKKLVRKGYFPQDGYI-LQYLPVPPNCLSVPDISDGVSI 229
Query: 254 NGPKLSFDDRTRACKKLVDFRG-----PAVELSSHVINSLS------LSKLNPDKTPSNM 302
LS + K++ +G P E N+L L KT ++
Sbjct: 230 MSSDLSVSMLKKVLKQIEVIKGSRSGEPNFESHKIEANNLQSSIEQYLEVRGTAKTSRSL 289
Query: 303 FTELQQRKVGENACNSSGLRWMKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESL 362
T K + + L M+ + + K + S R+V+ GD ++EIG+P +IA+ +
Sbjct: 290 DTRFGSSKEPNESSTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGLPFEIAQRI 349
Query: 363 QVSVYVNRENKKNLLDCCELRL-------LEKGHFKVCRKGRPVVLYKKKDLQIGDLLYR 415
VN N K+L + + +L L + KG L+ G +++R
Sbjct: 350 TFEERVNVHNMKHLQNLVDEKLCLTYRDGLSTYSLREGSKGHTF-------LRPGQVVHR 402
Query: 416 PLTDGD 421
+ DGD
Sbjct: 403 RIMDGD 408
>J3L864_ORYBR (tr|J3L864) DNA-directed RNA polymerase OS=Oryza brachyantha
GN=OB01G54200 PE=3 SV=1
Length = 1576
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 102/433 (23%), Positives = 185/433 (42%), Gaps = 58/433 (13%)
Query: 20 MPSGVITAIKFDVLTGEDI---RTISALE----IEAAGQVVCS-DLGLPNSSEVCTTCGT 71
+ G I IK + + E+I + ++ LE I Q++ + LG+P C +CG+
Sbjct: 32 IAEGSIRRIKLSITSNEEILKAQPVNELEKPIPITHQSQLLDNPHLGMPLQVGSCQSCGS 91
Query: 72 NDKKLCEGHFGAIKFPFSIVHPYFISEAAEILNKICPACKSIRC--DLLIKGVKFLSVDK 129
+ CEGHFG I+ P I HP ++E +++LN IC +C I+ + KG KF S
Sbjct: 92 ASSEECEGHFGFIELPVPIYHPSHVTELSKMLNFICLSCLRIKNSKNSTTKGSKFTS--- 148
Query: 130 KLNDCKYCSGISMGRYPTMKFRVSYNNLSRSPEIISEINDTASKKKTLGQRLAADYWDFI 189
C +C + P V +N + E+ + + + L +W F+
Sbjct: 149 ----CSHCQELQ----PLCIAEVKKSNGACGLELRAPVQ----------KELEEGFWSFL 190
Query: 190 PNGSEEEESLVNRR-LSLSQVHHLLSDVDPD-----FIEKYVPRKSLLDLNYFPVTPNGH 243
+RR L +V +++ + + + Y+P+ + +NY V PN
Sbjct: 191 DQFGGCTRGASHRRPLLPEEVENIIMKIPVETRTRLAVRGYIPQDGFV-MNYLCVPPNC- 248
Query: 244 RVTEFSHRPSNGPKLSFDDRTRACKKLVDFRGPAVELSSHVINS--LSLSKLNPD--KTP 299
+ F+ N T +K++ ++SS I S + +++++ D +
Sbjct: 249 -LQAFNVLDGNTYMCPSGTSTNLLRKILR---KIQQISSSRIGSSNIQVNQVDADDLQVA 304
Query: 300 SNMFTELQQRKVGEN---ACNSSGLRW---MKDVVLGKRNDCSFRTVVVGDPDLALSEIG 353
+ L+ G++ A + +RW MK + K + S R V+ GDP + L+ +G
Sbjct: 305 VANYINLRGTTKGQDVTFASQPASIRWQQKMKTFFISKSSSFSSRGVITGDPYIGLNVVG 364
Query: 354 VPCQIAESLQVSVYVNRENKKNLLDC-----CELRLLEKGHFKVCRKGRPVVLYKKKDLQ 408
VP +IA+ + V V N L D C + +G+ K L+
Sbjct: 365 VPEEIAKRMSVEERVTDHNIDQLQDMMNNGLCLTYIDANSITYSLDEGQDNQKKKYITLK 424
Query: 409 IGDLLYRPLTDGD 421
+G+++ R + DGD
Sbjct: 425 VGEIVNRRVLDGD 437
>B9RGA8_RICCO (tr|B9RGA8) DNA-directed RNA polymerase OS=Ricinus communis
GN=RCOM_1452510 PE=3 SV=1
Length = 991
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 104/428 (24%), Positives = 173/428 (40%), Gaps = 60/428 (14%)
Query: 23 GVITAIKFDVLTGEDIR--TISALEIEAAGQVVCSDLGLPNSSEVCTTCGTNDKKLCEGH 80
G + IKF + T ++I ++S I + Q+ LGLP C +CGT++ CEGH
Sbjct: 14 GEVVGIKFGLATYKEISAASVSDCPISHSSQLTNPFLGLPLEFGKCESCGTSEPGKCEGH 73
Query: 81 FGAIKFPFSIVHPYFISEAAEILNKICPACKSIRCDLLIKGVKFLSVDKKLNDC-KYCSG 139
FG I+ P I HP +SE L ++ L +K V ++L C + +
Sbjct: 74 FGYIELPIPIYHPSHVSE----LKRMLSLLCLKCLKLKTNKIKSSGVAERLFSCCEEAAQ 129
Query: 140 ISMGRYPTMKFRVSYNNLSRSPEIISEINDTASKKKTLGQRLAADYWDFIPNGSEEEESL 199
IS+ T +Y + P + RL +W+F+
Sbjct: 130 ISIKEVKTTD--GAYILQLKLPSRM---------------RLRDGFWNFLERYGFRYGDD 172
Query: 200 VNRRLSLSQVHHLLSDVDPDFIEK-----YVPRKSLLDLNYFPVTPNGHRVTEFSHRPSN 254
+ R L +V +L + D +K Y P+ + + Y PV PN V + S S
Sbjct: 173 ITRTLLPCEVLEMLRRIPQDTRKKLAKKGYFPQDGYI-MRYVPVPPNCLSVPDISDGVS- 230
Query: 255 GPKLSFDDRTRACKKLV-------DFRGPAVELSSHVINSLSLSKLNPDKTPSNMFTELQ 307
+S D KK++ R SH + ++ L D+ T
Sbjct: 231 --VMSSDLSISMLKKVLKQVEIIKSSRSGEPNFESHEVEAVDLQS-AVDQYLQVRGTAKS 287
Query: 308 QRKVGE------NACNSSGLRW---MKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQI 358
R VGE + +SS W M+ + + K + S R+V+ GD ++EIG+P +I
Sbjct: 288 ARDVGERFGVHKESNDSSTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKCVNEIGIPSEI 347
Query: 359 AESLQVSVYVNRENKKNLLDCCELRLLEKGHFKVCRKGRPVVLYKKKD-----LQIGDLL 413
A+ + VN N + L + + +L R G ++ L++G ++
Sbjct: 348 AQRITFEERVNAHNMQYLQELVDNKLC-----LTYRDGSSTYSLREGSKGHTFLRLGQIV 402
Query: 414 YRPLTDGD 421
+R + DGD
Sbjct: 403 HRRIMDGD 410
>K7M0Q7_SOYBN (tr|K7M0Q7) DNA-directed RNA polymerase OS=Glycine max PE=3 SV=1
Length = 2020
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 106/439 (24%), Positives = 173/439 (39%), Gaps = 62/439 (14%)
Query: 17 EHNMPS----GVITAIKFDVLTGEDIRT--ISALEIEAAGQVVCSDLGLPNSSEVCTTCG 70
E N PS G + IKF + T ++I T IS I A Q+ LGLP C +CG
Sbjct: 2 EDNPPSSVLDGTVVGIKFGMATRQEICTASISESSISHASQLSNPFLGLPLEFGRCESCG 61
Query: 71 TNDKKLCEGHFGAIKFPFSIVHPYFISEAAEILNKICPACKSIRCDLLIKGVKFLSVDKK 130
T++ CEGHFG ++ P I HP ISE +L+ +C C +R L+ +
Sbjct: 62 TSEVGKCEGHFGYVELPVPIYHPSHISELKRMLSVVCLNCLKMRKTKFPASSSGLA-QRL 120
Query: 131 LNDCKYCSGISMGRYPTMKFRVS----YNNLSRSPEIISEINDTASKKKTLGQRLAADYW 186
++ C C ++ + + S Y L S S+I+D +W
Sbjct: 121 ISPC--CQDVNAALVSIREVKTSDGACYLALKVSK---SKIHD--------------GFW 161
Query: 187 DFIPNGSEEEESLVNRRLSLSQVHHLLSDVDPDFIEK-----YVPRKSLLDLNYFPVTPN 241
F+ E R L + ++ + + +K + P+ + L Y PV PN
Sbjct: 162 SFLEKYGYRYEGDETRALLPCEAMEIIKRIPIETKKKLAGKGFFPQDGYV-LKYLPVPPN 220
Query: 242 GHRVTEFSHRPSNGPKLSFDDRTRACKKLV-------DFRGPAVELSSHVINSLSLSKL- 293
V E S S +S D +KL+ R SH + + L +
Sbjct: 221 CLSVPEVSDGAS---VMSSDPSMTILRKLLRKVEIIKSSRSGEPNFESHHVEANDLQSVV 277
Query: 294 -------NPDKTPSNMFTELQQRKVGENACNSSGLRWMKDVVLGKRNDCSFRTVVVGDPD 346
K ++ T K + + L M+ + + K + S R V+ GD
Sbjct: 278 DQYFQIRGTSKPARDIETHFGVNKELTASSTKAWLEKMRTLFIRKGSGFSSRNVITGDCY 337
Query: 347 LALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCE----LRLLEKGHFKVCRKGRPVVLY 402
++E+G+P ++A+ + VN N + L + L E R+G +Y
Sbjct: 338 KRINEVGIPVEVAQRITFEERVNIHNIRYLQKLVDEHLCLTYKEGVSTYSLREGSKGHIY 397
Query: 403 KKKDLQIGDLLYRPLTDGD 421
L+ G +++R + DGD
Sbjct: 398 ----LKPGQIVHRRIMDGD 412
>Q1L5X5_ANTMA (tr|Q1L5X5) DNA-directed RNA polymerase (Fragment) OS=Antirrhinum
majus GN=RPD1 PE=2 SV=1
Length = 1112
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 51/85 (60%)
Query: 337 FRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEKGHFKVCRKG 396
FRTVVVGDP + + EIG+P +IA+++ VS + N L CC+L L G F V R G
Sbjct: 1 FRTVVVGDPRIRVDEIGLPIEIAKNMLVSDNIYLWNWDKLESCCDLMLRRNGQFSVTRDG 60
Query: 397 RPVVLYKKKDLQIGDLLYRPLTDGD 421
+ + L+ GD +YRPL DGD
Sbjct: 61 QKTCVRSADMLRTGDSIYRPLIDGD 85
>K4B027_SOLLC (tr|K4B027) DNA-directed RNA polymerase OS=Solanum lycopersicum
GN=Solyc01g096390.2 PE=3 SV=1
Length = 1678
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 103/429 (24%), Positives = 182/429 (42%), Gaps = 60/429 (13%)
Query: 23 GVITAIKFDVLTGEDI--RTISALEIEAAGQVVCSDLGLPNSSEVCTTCGTNDKKLCEGH 80
G++ IKF + T ++I +IS I ++ LGLP + C +CGT + CEGH
Sbjct: 57 GIVKRIKFGLATPQEICKSSISDCPITHPSLLLNPFLGLPLEAGRCESCGTAEPGQCEGH 116
Query: 81 FGAIKFPFSIVHPYFISEAAEILNKICPACKSIRC-DLLIKGVKFLSVDKKLNDCKYCSG 139
FG I+ P I HP +SE ++L+ +C C ++ +K L ++ L+ C C
Sbjct: 117 FGYIELPIPIYHPDHVSELKKMLSLLCLKCLKMKNRKFQVKNAGVL--ERMLSSC--CED 172
Query: 140 ISMGRYPTMKFRVSYNNLSRSPEIISEINDTASKKKTLGQRLAADY--WDFIPNGSEEEE 197
+S +VS + +D AS + + AA W+F+
Sbjct: 173 VS---------QVSVYE--------GKTSDGASYLELKVPKNAAKLQEWNFLEKYGYRYG 215
Query: 198 SLVNRRLSLSQVHHLLSDVDPDFIEK-----YVPRKSLLDLNYFPVTPNGHRVTEFSHRP 252
+R L S+V +L + D +K Y P++ + L Y PV PN V + S
Sbjct: 216 DGYSRPLLPSEVLAILRRIREDTRKKLSAKGYFPQEGYI-LQYLPVPPNCLSVPDIS--- 271
Query: 253 SNGPKLSFDDRTRACKKLVDFRGPAVELSSHVINSLSLSKLNPDKTPSNMFTELQQRKVG 312
+G + D + + V + ++ S + ++ + + + LQ R G
Sbjct: 272 -DGNNIMSSDHSITMLRKVLRQIDIIKSSRSGTPNFEAHEVEANDLQAAVVQYLQFRGTG 330
Query: 313 E-------------NACNSSGLRW---MKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPC 356
+ A +++ W MK + + K + S R+V+ GDP + EIG+PC
Sbjct: 331 KASRDVDKRFGIHKEAADTTTKAWLEKMKTLFIRKGSGFSSRSVITGDPYKGVGEIGLPC 390
Query: 357 QIAESLQVSVYVNRENKKNLLDCCELRLL----EKGHFKVCRKGRPVVLYKKKDLQIGDL 412
+IA+ + V++ N L + +L + R+G + L+ G +
Sbjct: 391 EIAQKITFEERVSQHNMAYLQKLVDEKLCLTYKDGSSTYSLREGSKGHTF----LRPGQI 446
Query: 413 LYRPLTDGD 421
++R + DGD
Sbjct: 447 VHRRIMDGD 455
>B9EWM0_ORYSJ (tr|B9EWM0) DNA-directed RNA polymerase OS=Oryza sativa subsp.
japonica GN=OsJ_04874 PE=3 SV=1
Length = 1528
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 107/442 (24%), Positives = 182/442 (41%), Gaps = 93/442 (21%)
Query: 20 MPSGVITAIKFDVLTGEDI---RTISALE----IEAAGQVVCSD-LGLPNSSEVCTTCGT 71
+P I I + + E+I + ++ LE I Q++ + LGLP C +CG+
Sbjct: 15 IPEASIRRINLSITSNEEILKAQPVNELEKPIPITHQSQLLNNPYLGLPLQVGSCQSCGS 74
Query: 72 NDKKLCEGHFGAIKFPFSIVHPYFISEAAEILNKICPACKSIRCDLLIKGVKFLSVDKKL 131
N + CEGHF I+ P I HP ++E ++ILN IC +RC L IK K L
Sbjct: 75 NAIEECEGHFRFIELPMPIFHPSHVTELSQILNLIC-----LRC-LKIKNRKELP----- 123
Query: 132 NDCKYCSGISMGRYPTMKFRVSYNNLSRSPEIISEINDTASKKKTLGQRLAADYWDFIPN 191
P V +N +R E+ + I + L +W F+
Sbjct: 124 --------------PLCVAEVKKSNGARGLELRAPIK----------KELEEGFWSFLDQ 159
Query: 192 -GSEEEESLVNRRLSLSQVHHLLSDVDPDF-----IEKYVPRKSLLDLNYFPVTPNGHRV 245
GS + R L +V +++ + + + Y+P+ + L+Y V PN RV
Sbjct: 160 FGSCTRGTSHCRPLLPEEVQNIIKKIPEETRRWLSVRGYIPQDGFI-LSYLCVPPNCLRV 218
Query: 246 TE-FSHRPSNGPKLSFDDRTRACKKLVDFRGPAV------------ELSSHVINSLSL-- 290
+ + S + +A +K+ RG + +L V N ++L
Sbjct: 219 SNVLDGNTFSCSGTSTNLLRKALRKIQQIRGSRIGSSNIQVDQVADDLQVDVANYINLGG 278
Query: 291 -SKLNPDKTPSNMFTELQQRKVGENACNSSGLRWMKDVVLGKRNDCSFRTVVVGDPDLAL 349
+K + D T ++ T +Q ++ MK + + K + S R V+ GDP + L
Sbjct: 279 TTKGHGDDTFTSQPTAMQWKQK------------MKTLFISKSSSFSSRGVITGDPYIGL 326
Query: 350 SEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEKGHFKVCRKGRPVV--LYKKKD- 406
+ +GVP ++A+ + V V N L D ++ KG + L KD
Sbjct: 327 NVVGVPEEVAKRMSVEEKVTDHNIAQLQD-----MMNKGLCLTYTDANSITYSLDAGKDN 381
Query: 407 -------LQIGDLLYRPLTDGD 421
L++G+++ R + DGD
Sbjct: 382 PNKKHTILKVGEIVNRRVFDGD 403
>Q5JJW0_ORYSJ (tr|Q5JJW0) DNA-directed RNA polymerase OS=Oryza sativa subsp.
japonica GN=P0458E05.13 PE=3 SV=1
Length = 1568
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 107/442 (24%), Positives = 182/442 (41%), Gaps = 93/442 (21%)
Query: 20 MPSGVITAIKFDVLTGEDI---RTISALE----IEAAGQVVCSD-LGLPNSSEVCTTCGT 71
+P I I + + E+I + ++ LE I Q++ + LGLP C +CG+
Sbjct: 15 IPEASIRRINLSITSNEEILKAQPVNELEKPIPITHQSQLLNNPYLGLPLQVGSCQSCGS 74
Query: 72 NDKKLCEGHFGAIKFPFSIVHPYFISEAAEILNKICPACKSIRCDLLIKGVKFLSVDKKL 131
N + CEGHF I+ P I HP ++E ++ILN IC +RC L IK K L
Sbjct: 75 NAIEECEGHFRFIELPMPIFHPSHVTELSQILNLIC-----LRC-LKIKNRKELP----- 123
Query: 132 NDCKYCSGISMGRYPTMKFRVSYNNLSRSPEIISEINDTASKKKTLGQRLAADYWDFIPN 191
P V +N +R E+ + I + L +W F+
Sbjct: 124 --------------PLCVAEVKKSNGARGLELRAPIK----------KELEEGFWSFLDQ 159
Query: 192 -GSEEEESLVNRRLSLSQVHHLLSDVDPDF-----IEKYVPRKSLLDLNYFPVTPNGHRV 245
GS + R L +V +++ + + + Y+P+ + L+Y V PN RV
Sbjct: 160 FGSCTRGTSHCRPLLPEEVQNIIKKIPEETRRWLSVRGYIPQDGFI-LSYLCVPPNCLRV 218
Query: 246 TE-FSHRPSNGPKLSFDDRTRACKKLVDFRGPAV------------ELSSHVINSLSL-- 290
+ + S + +A +K+ RG + +L V N ++L
Sbjct: 219 SNVLDGNTFSCSGTSTNLLRKALRKIQQIRGSRIGSSNIQVDQVADDLQVDVANYINLGG 278
Query: 291 -SKLNPDKTPSNMFTELQQRKVGENACNSSGLRWMKDVVLGKRNDCSFRTVVVGDPDLAL 349
+K + D T ++ T +Q ++ MK + + K + S R V+ GDP + L
Sbjct: 279 TTKGHGDDTFTSQPTAMQWKQK------------MKTLFISKSSSFSSRGVITGDPYIGL 326
Query: 350 SEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEKGHFKVCRKGRPVV--LYKKKD- 406
+ +GVP ++A+ + V V N L D ++ KG + L KD
Sbjct: 327 NVVGVPEEVAKRMSVEEKVTDHNIAQLQD-----MMNKGLCLTYTDANSITYSLDAGKDN 381
Query: 407 -------LQIGDLLYRPLTDGD 421
L++G+++ R + DGD
Sbjct: 382 PNKKHTILKVGEIVNRRVFDGD 403
>M0SC37_MUSAM (tr|M0SC37) DNA-directed RNA polymerase OS=Musa acuminata subsp.
malaccensis PE=3 SV=1
Length = 144
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 65/123 (52%), Gaps = 10/123 (8%)
Query: 23 GVITAIKFDVLTGEDIRT--ISALEIEAAGQVVCSDLGLPNSSEVCTTCGTNDKKLCEGH 80
G I +IKF + T E+IRT IS I Q+ LGLP S C TCGT + CEGH
Sbjct: 13 GSICSIKFSIATAEEIRTYSISDCPISHPSQLANPFLGLPLESGGCETCGTAEIGNCEGH 72
Query: 81 FGAIKFPFSIVHPYFISEAAEILNKICPACKSIRCDLLIKGVKFLSVDKKLND--CKYCS 138
FG I+ P + HP +SE ++L+ +C C L +K VK+ K++ C YC
Sbjct: 73 FGYIELPIPVYHPSHVSELRDLLSLVCLKC------LRMKKVKYSVGKGKISSMPCLYCL 126
Query: 139 GIS 141
IS
Sbjct: 127 VIS 129
>H3FHF9_PRIPA (tr|H3FHF9) DNA-directed RNA polymerase OS=Pristionchus pacificus
GN=WBGene00111260 PE=3 SV=1
Length = 1475
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 111/416 (26%), Positives = 166/416 (39%), Gaps = 73/416 (17%)
Query: 57 LGLPNSSEVCTTCGTNDKKLCEGHFGAIKFPFSIVHPYFISEAAEILNKICPACKSIRCD 116
LG S CTTCG N C GHFG I + H F ++L IC C S
Sbjct: 61 LGTSTKSSNCTTCGQNLTD-CIGHFGYIDLTMPVFHVGFFRLTIQMLQCICKGCSS---- 115
Query: 117 LLIKGVKFLSVDKKLNDCKYCSGISMGRYPTMKFRVSYNNLSRSPEIISEINDTASK--- 173
LL+ + + K++++ + R + ++ ++ S +I IN A
Sbjct: 116 LLLHSAQREAFMKQISN----PNLDYLRRKALHKKI----VAASKKITICINCGAKNGVV 167
Query: 174 KKTLGQRLAADYWDFIPNGSEEEESLV---NRRLS--LSQ----------VHHLLSDVD- 217
KK +G L + IP E+E S N L LS+ VH +LS+VD
Sbjct: 168 KKAVGAVLKIVHSHSIPASQEKEYSAAIDDNAELGSLLSKGKFILLTPLAVHKILSNVDE 227
Query: 218 ---PDFIEKYVPRKSLLD--LNYFPVTPNGHRVTEFSHRPSNGPK--------------- 257
P + + R++ D L PV PN R + S S +
Sbjct: 228 RDIPILMCRSGERRNPSDVLLTRIPVPPNCIRPSVVSEVKSGTTEDDLTMKLSEIMLIND 287
Query: 258 -LSFDDRTRACKKLVDFRGPAVELSSHVINSLSLSKLNPDKTPSNMFTELQQRKVGENAC 316
L R A K V+ +++ + + LS L PD P QR G+
Sbjct: 288 VLDKHKRDGAPIKTVNETWDHLQIQCALYINSELSGLPPDMQPKKFLRGFTQRLKGKQGR 347
Query: 317 NSSGLRWMKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNREN---- 372
L GKR D S RTV+ DP+L + ++GVP +A+ L VN N
Sbjct: 348 FRGNLS-------GKRVDFSGRTVISPDPNLRIDQVGVPIHVAKILTFPEIVNSANIERM 400
Query: 373 KKNLLDCCEL-----RLLEK--GHFKVCRKGRPVVLYKKKDLQIGDLLYRPLTDGD 421
+K +++ C++ L+EK G+ + + G+ L L GD+L R L D D
Sbjct: 401 RKLVINGCDIHPGANHLVEKKTGNKRFLKYGKREEL--AASLTYGDILERHLDDND 454
>M5XM01_PRUPE (tr|M5XM01) Uncharacterized protein OS=Prunus persica
GN=PRUPE_ppa000088mg PE=4 SV=1
Length = 1855
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 102/426 (23%), Positives = 174/426 (40%), Gaps = 53/426 (12%)
Query: 23 GVITAIKFDVLTGEDIRT--ISALEIEAAGQVVCSDLGLPNSSEVCTTCGTNDKKLCEGH 80
G IT IKF + T ++I T IS I A Q+ LGLP C +CGT++ CEGH
Sbjct: 12 GEITGIKFGLATHQEICTASISNCAISHASQLSNPFLGLPLEFGKCESCGTSEAGKCEGH 71
Query: 81 FGAIKFPFSIVHPYFISEAAEILNKICPACKSIRCDLLIKGVKFLSVDKKLNDCKYCSGI 140
FG I+ P I HP +SE +L+ +C C ++ + L+ + C+ S +
Sbjct: 72 FGYIELPIPIFHPNHVSELKRMLSLLCLKCLKMKKNKFPTKNAGLAERMLSSCCEDASQV 131
Query: 141 SMGRYPTMKFRVSYNNLSRSPEIISEINDTASKKKTLGQRLAADYWDFIPNGSEEEESLV 200
S+G S K+ R +W+F+
Sbjct: 132 SIGEIKPTDGSCSLQ-----------------LKRPSKSRTPPGFWNFLERYGFRYGDGH 174
Query: 201 NRRLSLSQVHHLLSDVDPDFIEK-----YVPRKSLLDLNYFPVTPNGHRVTEFSHRPSNG 255
R L +V +L + + +K Y P+ + L+ PV PN V E S S
Sbjct: 175 IRTLLPCEVMEMLKRIPQETRKKLAAKGYFPQDGYI-LSQIPVPPNCLSVPEISDGVS-- 231
Query: 256 PKLSFDDRTRACKKLVDFRGPAVELSSHVINSLSLSKLNPDKTPSNMFTELQQRKVGE-- 313
+S D KK++ + + S I + + ++ + + LQ R G+
Sbjct: 232 -VMSADPSISMLKKVLK-QVEIIRSSRSGIPNFESQIVEANELQAIIDQYLQVRGTGKPS 289
Query: 314 -------------NACNS-SGLRWMKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQIA 359
NA ++ + L M+ + + K + S R+V+ GD ++E+G+P +IA
Sbjct: 290 RDIDARFGVNKELNASSTKAWLEKMRTLFIRKGSGFSSRSVITGDAFRRVNEVGIPYEIA 349
Query: 360 ESLQVSVYVNRENKKNLLDCCELRLL----EKGHFKVCRKGRPVVLYKKKDLQIGDLLYR 415
+ + VN N + L + + +L + R+G + L+ G +++R
Sbjct: 350 QRITFEEKVNDHNIRYLQELVDSKLCLTYKDGSSTYSLREGSKGHTF----LRPGQVVHR 405
Query: 416 PLTDGD 421
+ DGD
Sbjct: 406 RIMDGD 411
>K7MDF7_SOYBN (tr|K7MDF7) DNA-directed RNA polymerase OS=Glycine max PE=3 SV=1
Length = 2065
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 55/104 (52%), Gaps = 6/104 (5%)
Query: 17 EHNMPS----GVITAIKFDVLTGEDIRT--ISALEIEAAGQVVCSDLGLPNSSEVCTTCG 70
E N PS G + IKF + T ++I T IS I A Q+ LGLP C +CG
Sbjct: 2 EDNPPSSVLDGTVVGIKFGMATRQEICTASISDSSISHASQLSNPFLGLPLEFGRCESCG 61
Query: 71 TNDKKLCEGHFGAIKFPFSIVHPYFISEAAEILNKICPACKSIR 114
T++ CEGHFG I+ P I HP IS+ +L+ +C C +R
Sbjct: 62 TSEVGKCEGHFGYIELPIPIYHPSHISDLKRMLSMVCLNCLKLR 105
>K7MDF9_SOYBN (tr|K7MDF9) DNA-directed RNA polymerase OS=Glycine max PE=3 SV=1
Length = 2049
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 55/104 (52%), Gaps = 6/104 (5%)
Query: 17 EHNMPS----GVITAIKFDVLTGEDIRT--ISALEIEAAGQVVCSDLGLPNSSEVCTTCG 70
E N PS G + IKF + T ++I T IS I A Q+ LGLP C +CG
Sbjct: 2 EDNPPSSVLDGTVVGIKFGMATRQEICTASISDSSISHASQLSNPFLGLPLEFGRCESCG 61
Query: 71 TNDKKLCEGHFGAIKFPFSIVHPYFISEAAEILNKICPACKSIR 114
T++ CEGHFG I+ P I HP IS+ +L+ +C C +R
Sbjct: 62 TSEVGKCEGHFGYIELPIPIYHPSHISDLKRMLSMVCLNCLKLR 105
>K7MDF5_SOYBN (tr|K7MDF5) DNA-directed RNA polymerase OS=Glycine max PE=3 SV=1
Length = 2082
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 55/104 (52%), Gaps = 6/104 (5%)
Query: 17 EHNMPS----GVITAIKFDVLTGEDIRT--ISALEIEAAGQVVCSDLGLPNSSEVCTTCG 70
E N PS G + IKF + T ++I T IS I A Q+ LGLP C +CG
Sbjct: 2 EDNPPSSVLDGTVVGIKFGMATRQEICTASISDSSISHASQLSNPFLGLPLEFGRCESCG 61
Query: 71 TNDKKLCEGHFGAIKFPFSIVHPYFISEAAEILNKICPACKSIR 114
T++ CEGHFG I+ P I HP IS+ +L+ +C C +R
Sbjct: 62 TSEVGKCEGHFGYIELPIPIYHPSHISDLKRMLSMVCLNCLKLR 105
>I1MIR6_SOYBN (tr|I1MIR6) DNA-directed RNA polymerase OS=Glycine max PE=3 SV=2
Length = 2098
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 55/104 (52%), Gaps = 6/104 (5%)
Query: 17 EHNMPS----GVITAIKFDVLTGEDIRT--ISALEIEAAGQVVCSDLGLPNSSEVCTTCG 70
E N PS G + IKF + T ++I T IS I A Q+ LGLP C +CG
Sbjct: 2 EDNPPSSVLDGTVVGIKFGMATRQEICTASISDSSISHASQLSNPFLGLPLEFGRCESCG 61
Query: 71 TNDKKLCEGHFGAIKFPFSIVHPYFISEAAEILNKICPACKSIR 114
T++ CEGHFG I+ P I HP IS+ +L+ +C C +R
Sbjct: 62 TSEVGKCEGHFGYIELPIPIYHPSHISDLKRMLSMVCLNCLKLR 105
>R0FV63_9BRAS (tr|R0FV63) Uncharacterized protein OS=Capsella rubella
GN=CARUB_v10022497mg PE=4 SV=1
Length = 1959
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 103/435 (23%), Positives = 173/435 (39%), Gaps = 68/435 (15%)
Query: 20 MPSGVITAIKFDVLTGEDI--RTISALEIEAAGQVVCSDLGLPNSSEVCTTCGTNDKKLC 77
+P G I I F + + +I +IS I A Q+ LGLP C +CG + C
Sbjct: 9 VPEGEIVGITFALASHHEICIASISESSINHASQLSNPFLGLPLEFGKCESCGATEPDKC 68
Query: 78 EGHFGAIKFPFSIVHPYFISEAAEILNKICPACKSIRCDLLIKG---VKFLSVDKKLNDC 134
EGHFG I+ P I HP + E ++L+ +C C I+ G + L V C
Sbjct: 69 EGHFGYIQLPVPIYHPAHVIELKQMLSLLCLKCLKIKKAKSTSGGLAERLLGV-----CC 123
Query: 135 KYCSGISM-------GRYPTMKFRVSYNNLSRSPEIISEINDTASKKKTLGQRLAADYWD 187
+ S IS+ Y +KF SRS RL A W+
Sbjct: 124 EEASHISIRDRASDGASYLELKFP------SRS-------------------RLQAGCWN 158
Query: 188 FIPNGSEEEESLVNRRLSLSQVHHLLSDVDPDFIEK-----YVPRKSLLDLNYFPVTPNG 242
F+ S R L +V +L + + +K ++P++ + L Y PV PN
Sbjct: 159 FLERYGYRYGSDYTRPLLAREVKEILRRIPEETRKKLAAKGHIPQEGYI-LEYLPVPPNC 217
Query: 243 HRVTEFSHRPS----NGPKLSFDDRTRACKKLVDFRGPAVELSSHVINSLSLSK-----L 293
V + S S + ++ D + + R SH + + + L
Sbjct: 218 LSVPDISDGLSSMSVDPSRIELKDVLKRVVAIKTSRSGETNFESHKAEANDMYRVVDTYL 277
Query: 294 NPDKTPSNMFTELQQRKVGENACNSSGLRW---MKDVVLGKRNDCSFRTVVVGDPDLALS 350
T T + +V + + +SS W M+ + + K + S R+V+ GD ++
Sbjct: 278 QVRGTAKAARTMDMRYRVSKISDSSSSKAWTEKMRTLFIRKGSGFSSRSVITGDAYRHVN 337
Query: 351 EIGVPCQIAESLQVSVYVNRENKKNLLDCCELRL----LEKGHFKVCRKGRPVVLYKKKD 406
E+G+P +IA+ + V+ N + L + + +L + R G +
Sbjct: 338 EVGIPIEIAQRITFEDRVSVHNIRYLQELVDKKLCLSYTQGSTTYSLRDGSK----GHTE 393
Query: 407 LQIGDLLYRPLTDGD 421
L+ G +++R + DGD
Sbjct: 394 LKPGQVVHRRVMDGD 408
>D7LEE8_ARALL (tr|D7LEE8) DNA-directed RNA polymerase OS=Arabidopsis lyrata
subsp. lyrata GN=ARALYDRAFT_483042 PE=3 SV=1
Length = 1947
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 107/440 (24%), Positives = 172/440 (39%), Gaps = 88/440 (20%)
Query: 25 ITAIKFDVLTGEDI--RTISALEIEAAGQVVCSDLGLPNSSEVCTTCGTNDKKLCEGHFG 82
I IKF + T +I +IS I Q+ S LGLP C +CG + CEGHFG
Sbjct: 14 IVGIKFALATHHEICIASISGSAINHPSQLTNSFLGLPLEFGKCESCGATEPDKCEGHFG 73
Query: 83 AIKFPFSIVHPYFISEAAEILNKICPACKSIRCDLLIKGVKFLSVDKKLND------CKY 136
I+ P I HP ++E ++L+ +C C I+ K S L D C+
Sbjct: 74 YIQLPVPIYHPAHVNELKQMLSLLCLKCLKIK--------KAKSTSGGLADRLLGVCCEE 125
Query: 137 CSGISMGRYPTMKFRVSYNNL---SRSPEIISEINDTASKKKTLGQRLAADYWDFIPNGS 193
S IS+ + SY L SRS RL A W+F+
Sbjct: 126 ASQISIRDRASDG--ASYLELKLPSRS-------------------RLQAGCWNFLERYG 164
Query: 194 EEEESLVNRRLSLSQVHHLLSDVDPDFIEK-----YVPRKSLLDLNYFPVTPNGHRVTE- 247
S R L +V +L + + +K ++P++ + L Y PV PN V +
Sbjct: 165 YRYGSDYTRPLLAREVKEILRRIPEETRKKLTAKGHIPQEGYI-LEYLPVPPNCLSVPDV 223
Query: 248 ---FSHRPSNGPKLSFDDRTRACKKLVDFRGPAVELSSHVINSLSLSKLNPDKTPSNMFT 304
+S + ++ D + + R SH + + ++ + T
Sbjct: 224 SDGYSSMSVDPSRIELKDVLKKVIAIKSSRSGETNFESHKAEANDMFRV--------VDT 275
Query: 305 ELQQRKVGENACN-------------SSGLRW---MKDVVLGKRNDCSFRTVVVGDPDLA 348
LQ R + A N SS W M+ + + K + S R+V+ GD
Sbjct: 276 YLQVRGTAKAARNIDMRYGVSKISDSSSSKAWTQKMRTLFIRKGSGFSSRSVITGDAYRH 335
Query: 349 LSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRL---LEKG----HFKVCRKGRPVVL 401
++E+G+P +IA+ + V+ N L + +L +G + KG V
Sbjct: 336 VNEVGIPIEIAQRITFEERVSVHNIGYLQKLVDDKLCLSYTQGSTTYSLRDGSKGHTV-- 393
Query: 402 YKKKDLQIGDLLYRPLTDGD 421
L+ G +++R + DGD
Sbjct: 394 -----LKPGQVVHRRVIDGD 408
>M8BMS2_AEGTA (tr|M8BMS2) DNA-directed RNA polymerase II subunit RPB1-B
OS=Aegilops tauschii GN=F775_02057 PE=4 SV=1
Length = 2017
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 68/141 (48%), Gaps = 13/141 (9%)
Query: 6 PSSMDDNDKFHEHNMPSGVITAIKFDVLTGEDIRT--ISALEIEAAGQVVCSDLGLPNSS 63
P +M++ D+ + G I +IK + T E+I T I+ + Q+ LGLP +
Sbjct: 42 PRAMEEEDQ-SAVLVAEGAIKSIKLSLSTEEEICTYSINDCPVTHPSQLGNPFLGLPLET 100
Query: 64 EVCTTCGTNDKKLCEGHFGAIKFPFSIVHPYFISEAAEILNKICPACKSIRCDLLIKGVK 123
C +CG + CEGHFG I+ P + HP +SE ++L+ +C C L IK K
Sbjct: 101 GKCESCGATENGKCEGHFGFIELPVPVYHPCHVSELRQLLSMVCLMC------LRIKKGK 154
Query: 124 FLSVDKKLN----DCKYCSGI 140
+ K N C YC G+
Sbjct: 155 VKQKNGKENVSVTACHYCRGL 175
>C1EA31_MICSR (tr|C1EA31) DNA-directed RNA polymerase OS=Micromonas sp. (strain
RCC299 / NOUM17) GN=MICPUN_94662 PE=3 SV=1
Length = 1720
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 94/416 (22%), Positives = 160/416 (38%), Gaps = 86/416 (20%)
Query: 13 DKFHEHNMPSGVITAIKFDVLTGEDIRTISALEIEAA----------GQVVCSDLGLPNS 62
D+F + A++F VL+ ++IR +S EIE A G + +G +
Sbjct: 5 DRFPHSTAELRRVKAVQFGVLSPDEIRKMSVCEIETAETYEKGRPKRGGLSDPRMGTMDR 64
Query: 63 SEVCTTCGTNDKKLCEGHFGAIKFPFSIVHPYFISEAAEILNKICPACKSIRCDLLIKGV 122
+ C T G N G+FG ++ + H FI +L C S +
Sbjct: 65 AMACETDGMNSTD-TPGYFGHLELAKPVFHYGFIKNVVSVLR--CVGFSSSK-------- 113
Query: 123 KFLSVDKKLNDCKYCSGISMGRYPTMKFRV-SYNNLSRSPEIISEINDTASKKKTLGQRL 181
L +DK D K+ + R K R+ + + ++ I + + G ++
Sbjct: 114 --LMIDKN-EDPKFAQ---IMRIKNNKQRLRKFTDACKTKTICPATGTPQPQYRLEGMKI 167
Query: 182 AADYW-----DFIPNGSEEEESLVNRRL-----SLSQVHHLLSDVDPDFIEKYVPRKSLL 231
A++ D++P+G E ++ + R ++S + DP+ S
Sbjct: 168 TAEFKKLEEDDYLPDGGERKQVITPERALNILKNISDEDCRILGFDPEHAHP-----SWF 222
Query: 232 DLNYFPVTPNGHRVTEFSHRPSNGPKLSFDDRTRACKKLVDFRGPAVELSSHVINSLSLS 291
L PV P+ R P ++FD TR+ L V+L V + +L
Sbjct: 223 VLQALPVPPHPVR-----------PSVAFDSSTRSEDDLT------VKLMEIVRTNKNLQ 265
Query: 292 KLNPDKTPSNM---FTELQQRKV---------GENACNSSGLRWMKDV------------ 327
+ + P ++ FTEL Q + G+ + R +K +
Sbjct: 266 RQEQNGAPQHVVQEFTELLQYHIMTFMDNTVAGQPRALTRSGRPIKSISERLKGKAGRIR 325
Query: 328 --VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCE 381
++GKR D S RTV+ DP+L L E+GVP IA ++ V N + L E
Sbjct: 326 GNLMGKRVDFSARTVITPDPNLMLDELGVPWSIALNMTYPETVTPYNIERLRKLVE 381
>E9BN38_LEIDB (tr|E9BN38) DNA-directed RNA polymerase OS=Leishmania donovani
(strain BPK282A1) GN=LDBPK_312680 PE=3 SV=1
Length = 1662
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 105/434 (24%), Positives = 172/434 (39%), Gaps = 53/434 (12%)
Query: 19 NMPSGVITAIKFDVLTGEDIRTISALEIEAA-----GQVV---CSDL--GLPNSSEVCTT 68
MP + ++F+V I+ + IE A GQ V +DL G + C T
Sbjct: 11 QMPLQKVHEVQFEVFKEAQIKAYAKCIIEHAKSYEHGQPVRGGINDLRMGTTDFEYSCET 70
Query: 69 CGTNDKKLCEGHFGAIKFPFSIVHPYFISEAAEILNKICPACKSIRCDLLIKGVKFLSVD 128
CG + C GHFG ++ I + L +C C ++ D +
Sbjct: 71 CGLKHPE-CPGHFGYVELAEPIFNINVFDVVLIALKCVCKYCGALLMDT--------NDP 121
Query: 129 KKLNDCKYCSGISMGRYPTMKFRVSYNNLSRSPEIISEINDTASKKKTLGQRLAADYWDF 188
++ + G++ R M ++ + RS +I + + ++ +G R A Y
Sbjct: 122 SEMKKIAHLQGLNRLR---MVAKLCGSVCKRSKDI--QGCEGKGRQPRIG-RFAGIYPGL 175
Query: 189 IPNGSEEEESLVNRRLSLSQVHHLLSDVDPDFIEKYVPR---KSLLDLNYFPVTPNGHR- 244
++EE+ V + QV +SD D I + PR L L P+ P R
Sbjct: 176 QIKVTQEEQDYVWHAENARQVLDRVSDSDA-LIMGFDPRFCHPRDLILTVLPIPPPQVRP 234
Query: 245 VTEFSHRPSNGPKLSFDDRTRACKKLVDF-----RGPAVELSSHVINSLSLSKLNPDKTP 299
F GP S D+ T +V + + + V S +L + +
Sbjct: 235 AVAF------GPAKSDDELTHQIMSIVKRNIQLRKDKESGVKAAVDRSRALLQEHVATFF 288
Query: 300 SNMFTELQQRKVGENACNSSGLRWMKDV-------VLGKRNDCSFRTVVVGDPDLALSEI 352
+N T + KVG+ S +K ++GKR D S RTV+ GDP++ + E+
Sbjct: 289 NNASTYYKPAKVGDTKKLKSLTERLKGKYGRLRGNLMGKRVDFSARTVITGDPNIDVDEV 348
Query: 353 GVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEKGHFKVCRKGRPVVLYKKKD-----L 407
GVP +A +L VN NKK L + + ++ + G L KD L
Sbjct: 349 GVPFSVAMTLTFPERVNVINKKRLTEFVQRTTYPSANYIIRPNGNVTKLALVKDRNAVHL 408
Query: 408 QIGDLLYRPLTDGD 421
+GD++ R + DGD
Sbjct: 409 DVGDVVERHVIDGD 422
>E3XD74_ANODA (tr|E3XD74) DNA-directed RNA polymerase OS=Anopheles darlingi
GN=AND_20631 PE=3 SV=1
Length = 1721
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 59/123 (47%), Gaps = 16/123 (13%)
Query: 26 TAIKFDVLTGEDIRTISALEIEAA-----------GQVVCSDLGLPNSSEVCTTCGTNDK 74
T ++F V T EDIR IS +I A G + +G N E+C TC D+
Sbjct: 9 TNLEFSVFTAEDIRKISVAKITLARSFDELGHPLRGGLYDPAMGPSNRGEICFTCA-RDE 67
Query: 75 KLCEGHFGAIKFPFSIVHPYFISEAAEILNKICPACKSIRCDLLIKGVK-FLSVDKKLND 133
CEGHFG I+ S+ +P+F+ +L C +C + L+ VK L + +L+D
Sbjct: 68 LHCEGHFGHIEIDLSVYNPFFVRTLYNLLRISCMSCTRL---LIHDNVKALLELQLRLSD 124
Query: 134 CKY 136
Y
Sbjct: 125 AGY 127
>E7A0J7_SPORE (tr|E7A0J7) DNA-directed RNA polymerase OS=Sporisorium reilianum
(strain SRZ2) GN=sr13669 PE=3 SV=1
Length = 1800
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 51/109 (46%), Gaps = 12/109 (11%)
Query: 22 SGVITAIKFDVLTGEDIRTISALEI-----------EAAGQVVCSDLGLPNSSEVCTTCG 70
+ I++ F LT EDIR IS +I AG + S LG +++C+TC
Sbjct: 8 TSTISSASFSFLTAEDIRRISVKQIINPVLLDTTNHPNAGGLYDSALGPMRPNDICSTCH 67
Query: 71 TNDKKLCEGHFGAIKFPFSIVHPYFISEAAEILNKICPACKSIRCDLLI 119
N + C GHFG I+ P + HP F+ +L C C R L++
Sbjct: 68 LNSYQ-CPGHFGHIELPSPVFHPLFMGNMFNLLRGTCFYCHRFRATLVV 115
>D8RLP4_SELML (tr|D8RLP4) DNA-directed RNA polymerase OS=Selaginella
moellendorffii GN=SELMODRAFT_441655 PE=3 SV=1
Length = 1438
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
Query: 22 SGVITAIKFDVLTGEDIRTISALEIEAAGQVVCSDLGLPNSSEVCTTCGTN----DKKLC 77
+G + A+ F LT E+I S E++ + + GLPN S+ CT+CG C
Sbjct: 19 TGTLIALDFRPLTSEEIIRASVYEVKTVRALQNNRFGLPNLSDCCTSCGAKRTDASNSAC 78
Query: 78 EGHFGAIKFPFSIVHPYFISEAAEILNKICPACKSIR 114
GH G I+ P + H IS ILN++C C S +
Sbjct: 79 PGHSGHIELPVLVYHWDRISALEAILNRVCLHCYSFK 115
>A4HJP9_LEIBR (tr|A4HJP9) DNA-directed RNA polymerase OS=Leishmania braziliensis
GN=LBRM_31_2950 PE=3 SV=1
Length = 1662
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 104/434 (23%), Positives = 174/434 (40%), Gaps = 53/434 (12%)
Query: 19 NMPSGVITAIKFDVLTGEDIRTISALEIEAA-----GQVV---CSDL--GLPNSSEVCTT 68
MP + ++F+V I+ + +E A GQ V +DL G + C T
Sbjct: 11 QMPLQKVHEVQFEVFKESQIKAYAKCIVEHAKSYEHGQPVRGGINDLRMGTTDFEYSCET 70
Query: 69 CGTNDKKLCEGHFGAIKFPFSIVHPYFISEAAEILNKICPACKSIRCDLLIKGVKFLSVD 128
CG + C GHFG ++ I + L +C C ++ D +
Sbjct: 71 CGLKHPE-CPGHFGYVELAEPIFNINVFDIVLIALKCVCKYCGALLMDT--------NDP 121
Query: 129 KKLNDCKYCSGISMGRYPTMKFRVSYNNLSRSPEIISEINDTASKKKTLGQRLAADYWDF 188
+L + G++ R M ++ + RS +I + + ++ +G R A Y
Sbjct: 122 SELKKIAHLQGLNRLR---MVAKLCGSVCKRSKDI--QGCEGKGRQPRIG-RFAGIYPGL 175
Query: 189 IPNGSEEEESLVNRRLSLSQVHHLLSDVDPDFIEKYVPR---KSLLDLNYFPVTPNGHRV 245
++EE+ V + QV +SD D I + PR L L P+ P R
Sbjct: 176 QIKVTQEEQDYVWHADNAWQVLDRVSDSDA-LIMGFDPRCCHPRDLILTVLPIPPPQVRP 234
Query: 246 T----------EFSHRPSNGPKLSFD---DRTRACKKLVDFRGPAVELSSHVINSLSLSK 292
E +H+ + K + D+ K VD R A+ L HV + +
Sbjct: 235 AVSFGSAKSDDELTHQIMSIVKRNIQLRKDKESGVKAAVD-RSRAL-LQEHV--ATFFNN 290
Query: 293 LNPDKTPSNMFTELQQRKVGENACNSSGLRWMKDVVLGKRNDCSFRTVVVGDPDLALSEI 352
+ P+ + + + + E G ++ ++GKR D S RTV+ GDP++ + E+
Sbjct: 291 ASTFYKPAKVGDTKKLKSLTERLKGKYG--RLRGNLMGKRVDFSARTVITGDPNIDVDEV 348
Query: 353 GVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEKGHFKVCRKGRPVVLYKKKD-----L 407
GVP +A +L VN NKK L D + ++ + G L KD L
Sbjct: 349 GVPFSVAMTLTFPERVNVINKKRLTDFVQRVTYPSANYVIRPNGNVTKLALVKDRSAVNL 408
Query: 408 QIGDLLYRPLTDGD 421
+GD++ R + DGD
Sbjct: 409 DVGDVVERHIIDGD 422
>D8RN79_SELML (tr|D8RN79) DNA-directed RNA polymerase OS=Selaginella
moellendorffii GN=SELMODRAFT_413061 PE=3 SV=1
Length = 1444
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
Query: 22 SGVITAIKFDVLTGEDIRTISALEIEAAGQVVCSDLGLPNSSEVCTTCGTN----DKKLC 77
+G + A+ F LT E+I S E++ + + GLPN S+ CT+CG C
Sbjct: 19 TGTLIALDFRPLTSEEIIRASVYEVKTVRALQNNRFGLPNLSDCCTSCGAKRTDASNSAC 78
Query: 78 EGHFGAIKFPFSIVHPYFISEAAEILNKICPACKSIR 114
GH G I+ P + H IS ILN++C C S +
Sbjct: 79 PGHSGHIELPVLVYHWDRISALEAILNRVCLHCYSFK 115
>A4I766_LEIIN (tr|A4I766) DNA-directed RNA polymerase OS=Leishmania infantum
GN=RPOIILS PE=3 SV=1
Length = 1662
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 107/441 (24%), Positives = 172/441 (39%), Gaps = 67/441 (15%)
Query: 19 NMPSGVITAIKFDVLTGEDIRTISALEIEAA-----GQVV---CSDL--GLPNSSEVCTT 68
MP + ++F+V I+ + IE A GQ V +DL G + C T
Sbjct: 11 QMPLQKVHEVQFEVFKEAQIKAYAKCIIEHAKSYEHGQPVRGGINDLRMGTTDFEYSCET 70
Query: 69 CGTNDKKLCEGHFGAIKFPFSIVHPYFISEAAEILNKICPACKSIRCDLLIKGVKFLSVD 128
CG + C GHFG ++ I + L +C C ++ D +
Sbjct: 71 CGLKHPE-CPGHFGYVELAEPIFNINVFDVVLIALKCVCKYCGALLMDT--------NDP 121
Query: 129 KKLNDCKYCSGISMGRYPTMKFRVSYNNLSRSPEIISEINDTASKKKTLGQRLAADYWDF 188
++ + G++ R M ++ + RS +I + + ++ +G R A Y
Sbjct: 122 SEMKKIAHLQGLNRLR---MVAKLCGSVCKRSKDI--QGCEGKGRQPRIG-RFAGIYPGL 175
Query: 189 IPNGSEEEESLVNRRLSLSQVHHLLSDVDPDFIEKYVPR---KSLLDLNYFPVTPNGHRV 245
++EE+ V + QV +SD D I + PR L L P+ P R
Sbjct: 176 QIKVTQEEQDYVWHAENARQVLDRVSDSDA-LIMGFDPRFCHPRDLILTVLPIPPPQVRP 234
Query: 246 T----------EFSHRPSNGPKLSFD---DRTRACKKLVDFRGPAVELSSHVINSLSLSK 292
E +H+ + K + D+ K VD R A+ L HV +
Sbjct: 235 AVAFGSAKSDDELTHQIMSIVKRNIQLRKDKESGVKAAVD-RSRAL-LQEHVATFFN--- 289
Query: 293 LNPDKTPSNMFTELQQRKVGENACNSSGLRWMKDV-------VLGKRNDCSFRTVVVGDP 345
N T + KVG+ S +K ++GKR D S RTV+ GDP
Sbjct: 290 --------NASTYYKPAKVGDTKKLKSLTERLKGKYGRLRGNLMGKRVDFSARTVITGDP 341
Query: 346 DLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEKGHFKVCRKGRPVVLYKKK 405
++ + E+GVP +A +L VN NKK L + + ++ + G L K
Sbjct: 342 NIDVDEVGVPFSVAMTLTFPERVNVINKKRLTEFVQRTTYPSANYIIRPNGNVTKLALVK 401
Query: 406 D-----LQIGDLLYRPLTDGD 421
D L +GD++ R + DGD
Sbjct: 402 DRNAVHLDVGDVVERHVIDGD 422
>E1F1V3_GIAIA (tr|E1F1V3) DNA-directed RNA polymerase OS=Giardia intestinalis
(strain P15) GN=GLP15_3982 PE=3 SV=1
Length = 1741
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 13/109 (11%)
Query: 17 EHNMPSGVITAIKFDVLTGEDIRTISALEIE-----------AAGQVVCSDLGLPNSSEV 65
EH P V + F VL+ + +S ++I AA V+ LGL +
Sbjct: 20 EHRFPKRV-EKLVFSVLSSNALMKLSEVQITTPILYEHYPSPAANGVLDKRLGLSDKVGR 78
Query: 66 CTTCGTNDKKLCEGHFGAIKFPFSIVHPYFISEAAEILNKICPACKSIR 114
C TCG D K+C GHFG I + HP I++A +L+ +CP C ++
Sbjct: 79 CATCG-KDTKMCIGHFGTISLALPVFHPGLINDARTMLSVVCPFCSRVK 126
>Q25312_LEIMA (tr|Q25312) DNA-directed RNA polymerase OS=Leishmania major
GN=RPOIILS PE=3 SV=3
Length = 1663
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 103/462 (22%), Positives = 166/462 (35%), Gaps = 108/462 (23%)
Query: 19 NMPSGVITAIKFDVLTGEDIRTISALEIE------------AAGQVVCSDLGLPNSSEVC 66
MP + ++F+V I+ + IE A C+ SS C
Sbjct: 11 QMPLQKVHEVQFEVFKEAQIKAYAKCIIEHAKSYASTASRCGAASTTCA-WARQTSSIAC 69
Query: 67 TTCGTNDKKLCEGHFGAIKFPFSIVHPYFISEAAEILNKICPACKSIRCDL--------- 117
TCG + C GHFG ++ I + L +C C ++ D
Sbjct: 70 ETCGLRHPE-CPGHFGYVELAEPIFNINVFDVVLIALKCVCKYCGALLMDTNDPSEMKKI 128
Query: 118 -LIKGVKFL--------SVDKKLNDCKYCSGIS--------MGRYPTMKFRVSYNNLSRS 160
++G+ L SV K+ D + C G +G YP ++ +V+
Sbjct: 129 AHLQGLNRLRMVAKLCGSVCKRSKDIQGCEGXGPPAAHRPFVGIYPGLQIKVT------- 181
Query: 161 PEIISEINDTASKKKTLGQRLAADYWDFIPNGSEEEESLVNRRLSLSQVHHLLSDVDP-- 218
+EE+ V + QV +SD D
Sbjct: 182 ---------------------------------QEEQDYVWHAENARQVLDRVSDSDALI 208
Query: 219 -DFIEKYV-PRKSLLDLNYFPVTPNGHRVTEFSHRPSNGPKLSFDDRTRACKKLVDF--- 273
F ++ PR LDL P+ P R + + G + DD T +V
Sbjct: 209 MGFDRRFCHPRD--LDLTVLPIPPPQVRSSIYL-----GGLMQVDDLTHQIMSIVKRNIQ 261
Query: 274 --RGPAVELSSHVINSLSLSKLNPDKTPSNMFTELQQRKVGENACNSSGLRWMKDV---- 327
+ + + V S +L + + +N T + KVG+ S +K
Sbjct: 262 LRKDKESGVKAAVDRSRALLQEHVATFFNNASTYYKPAKVGDTKKLKSLTERLKGKYGRL 321
Query: 328 ---VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRL 384
++GKR D S RTV+ GDP++ + E+GVP +A +L VN NKK L + +
Sbjct: 322 RGNLMGKRVDFSARTVITGDPNIDVDEVGVPFSVAMTLTFPERVNVINKKRLTEFVQRTT 381
Query: 385 LEKGHFKVCRKGRPVVLYKKKD-----LQIGDLLYRPLTDGD 421
++ + G L KD L +GD++ R + DGD
Sbjct: 382 YPSANYIIRPNGNVTKLALVKDRSAVHLDVGDVVERHVIDGD 423
>I2G101_USTH4 (tr|I2G101) DNA-directed RNA polymerase OS=Ustilago hordei (strain
Uh4875-4) GN=UHOR_04198 PE=3 SV=1
Length = 1798
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 49/109 (44%), Gaps = 12/109 (11%)
Query: 22 SGVITAIKFDVLTGEDIRTISALEI-----------EAAGQVVCSDLGLPNSSEVCTTCG 70
+ I++ F LT EDIR IS +I AG + LG ++C+TC
Sbjct: 8 TSTISSASFSFLTAEDIRRISVKQIINPVLLDTTNHPNAGGLYDPALGPMRPHDICSTCH 67
Query: 71 TNDKKLCEGHFGAIKFPFSIVHPYFISEAAEILNKICPACKSIRCDLLI 119
N + C GHFG I+ P + HP F+ +L C C R L++
Sbjct: 68 LNSYQ-CSGHFGHIELPSPVFHPLFMGNMFNLLRGTCFYCHRFRASLVV 115
>A3LYS3_PICST (tr|A3LYS3) DNA-directed RNA polymerase OS=Scheffersomyces stipitis
(strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL
Y-11545) GN=RPA190 PE=3 SV=2
Length = 1644
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 53/106 (50%), Gaps = 15/106 (14%)
Query: 25 ITAIKFDVLTGEDIRTISALEIEAAGQVVCSDLGLPNSS------------EVCTTCGTN 72
IT++ F VL+ ++IR +SA +I V +LG P S VCTTCG
Sbjct: 11 ITSVDFGVLSDDEIRKLSAKQI--TNPTVFDNLGHPIGSGLYDLALGAFLRNVCTTCGL- 67
Query: 73 DKKLCEGHFGAIKFPFSIVHPYFISEAAEILNKICPACKSIRCDLL 118
D+K C GH G I+ P + +P F ++ +L C C ++ + L
Sbjct: 68 DEKFCPGHLGHIELPVPVYNPLFFNQLYILLRSTCLYCHHLKLNAL 113
>B9W974_CANDC (tr|B9W974) DNA-directed RNA polymerase OS=Candida dubliniensis
(strain CD36 / ATCC MYA-646 / CBS 7987 / NCPF 3949 /
NRRL Y-17841) GN=CD36_10000 PE=3 SV=1
Length = 1656
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 52/106 (49%), Gaps = 15/106 (14%)
Query: 25 ITAIKFDVLTGEDIRTISALEIEAAGQVVCSDLGLPNSS------------EVCTTCGTN 72
IT++ F VL+ E+IR +SA +I +V +LG P + VCTTCG
Sbjct: 11 ITSVDFGVLSDEEIRKLSAKQI--TNPIVFDNLGHPINGGLYDLSLGAFLRNVCTTCGL- 67
Query: 73 DKKLCEGHFGAIKFPFSIVHPYFISEAAEILNKICPACKSIRCDLL 118
D+K C GH G I+ P + +P F ++ L C C + + L
Sbjct: 68 DEKFCPGHLGHIELPVPVYNPMFFNQLYIFLRSACLYCHKFKLNQL 113
>Q59LW3_CANAL (tr|Q59LW3) DNA-directed RNA polymerase OS=Candida albicans (strain
SC5314 / ATCC MYA-2876) GN=RPA190 PE=3 SV=1
Length = 1665
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 52/106 (49%), Gaps = 15/106 (14%)
Query: 25 ITAIKFDVLTGEDIRTISALEIEAAGQVVCSDLGLPNSS------------EVCTTCGTN 72
IT++ F VL+ E+IR +SA +I +V +LG P + VCTTCG
Sbjct: 11 ITSVDFGVLSDEEIRKLSAKQI--TNPIVFDNLGHPINGGLYDLSLGAFLRNVCTTCGL- 67
Query: 73 DKKLCEGHFGAIKFPFSIVHPYFISEAAEILNKICPACKSIRCDLL 118
D+K C GH G I+ P + +P F ++ L C C + + L
Sbjct: 68 DEKFCPGHLGHIELPVPVYNPMFFNQLYIFLRSACLYCHKFKLNQL 113
>D6RMH4_COPC7 (tr|D6RMH4) DNA-directed RNA polymerase OS=Coprinopsis cinerea
(strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003)
GN=CC1G_14600 PE=3 SV=1
Length = 1726
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 50/110 (45%), Gaps = 17/110 (15%)
Query: 18 HNMPSGVITAIKFDVLTGEDIRTISALEIEAAGQVVCSDLGLPN-------------SSE 64
H++PS +T + F LT +DIR IS +I V+ DL PN S+
Sbjct: 5 HSIPS-TVTGVSFSFLTAQDIRRISVKQI--VNPVLLDDLNRPNIGGLYDPALGPHDRSD 61
Query: 65 VCTTCGTNDKKLCEGHFGAIKFPFSIVHPYFISEAAEILNKICPACKSIR 114
+C TC C GHFG I+ P + HP F+ +L +C C +
Sbjct: 62 ICATCHLT-YFTCPGHFGHIELPAPVFHPLFMGNLYNLLRGMCMFCHRFK 110
>H2B1A9_KAZAF (tr|H2B1A9) DNA-directed RNA polymerase OS=Kazachstania africana
(strain ATCC 22294 / BCRC 22015 / CBS 2517 / CECT 1963 /
NBRC 1671 / NRRL Y-8276) GN=KAFR0K00540 PE=3 SV=1
Length = 1662
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 50/102 (49%), Gaps = 15/102 (14%)
Query: 25 ITAIKFDVLTGEDIRTISALEIEAAGQVVCSDLGLPNSS------------EVCTTCGTN 72
IT++ F +LT +DIR++SA +I V +LG P S +CTTCG
Sbjct: 11 ITSVDFSILTSKDIRSLSAKQI--INPTVLDNLGHPISGGLYDLSLGAFLRNLCTTCGL- 67
Query: 73 DKKLCEGHFGAIKFPFSIVHPYFISEAAEILNKICPACKSIR 114
D+K C GH G I+ P + +P F ++ L C C R
Sbjct: 68 DEKFCPGHVGHIELPVPVYNPLFFNQLYIYLRSSCLFCHHFR 109
>Q4Q600_LEIMA (tr|Q4Q600) DNA-directed RNA polymerase OS=Leishmania major
GN=RPOIILS PE=3 SV=1
Length = 1662
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 106/441 (24%), Positives = 174/441 (39%), Gaps = 67/441 (15%)
Query: 19 NMPSGVITAIKFDVLTGEDIRTISALEIEAA-----GQVV---CSDL--GLPNSSEVCTT 68
MP + ++F+V I+ + IE A GQ V +DL G + C T
Sbjct: 11 QMPLQKVHEVQFEVFKEAQIKAYAKCIIEHAKSYEHGQPVRGGINDLRMGTTDFEYSCET 70
Query: 69 CGTNDKKLCEGHFGAIKFPFSIVHPYFISEAAEILNKICPACKSIRCDLLIKGVKFLSVD 128
CG + C GHFG ++ I + L +C C ++ D +
Sbjct: 71 CGLRHPE-CPGHFGYVELAEPIFNINVFDVVLIALKCVCKYCGALLMDT--------NDP 121
Query: 129 KKLNDCKYCSGISMGRYPTMKFRVSYNNLSRSPEIISEINDTASKKKTLGQRLAADYWDF 188
++ + G++ R M ++ + RS +I + + ++ +G R Y
Sbjct: 122 SEMKKIAHLQGLNRLR---MVAKLCGSVCKRSKDI--QGCEGKGRQPRIG-RFVGIYPGL 175
Query: 189 IPNGSEEEESLVNRRLSLSQVHHLLSDVDP---DFIEKYVPRKSLLDLNYFPVTPNGHR- 244
++EE+ V + QV +SD D F ++ + L+ L P+ P R
Sbjct: 176 QIKVTQEEQDYVWHAENARQVLDRVSDSDALIMGFDRRFCHPRDLI-LTVLPIPPPQVRP 234
Query: 245 -VT--------EFSHRPSNGPKLSFD---DRTRACKKLVDFRGPAVELSSHVINSLSLSK 292
VT E +H+ + K + D+ K VD R A+ L HV +
Sbjct: 235 AVTFGSAKSDDELTHQIMSIVKRNIQLRKDKESGVKAAVD-RSRAL-LQEHVATFFN--- 289
Query: 293 LNPDKTPSNMFTELQQRKVGENACNSSGLRWMKDV-------VLGKRNDCSFRTVVVGDP 345
N T + KVG+ S +K ++GKR D S RTV+ GDP
Sbjct: 290 --------NASTYYKPAKVGDTKKLKSLTERLKGKYGRLRGNLMGKRVDFSARTVITGDP 341
Query: 346 DLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEKGHFKVCRKGRPVVLYKKK 405
++ + E+GVP +A +L VN NKK L + + ++ + G L K
Sbjct: 342 NIDVDEVGVPFSVAMTLTFPERVNVINKKRLTEFVQRTTYPSANYIIRPNGNVTKLALVK 401
Query: 406 D-----LQIGDLLYRPLTDGD 421
D L +GD++ R + DGD
Sbjct: 402 DRSAVHLDVGDVVERHVIDGD 422
>A8B4F1_GIAIC (tr|A8B4F1) DNA-directed RNA polymerase OS=Giardia intestinalis
(strain ATCC 50803 / WB clone C6) GN=GL50803_16223 PE=3
SV=1
Length = 1741
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 51/109 (46%), Gaps = 13/109 (11%)
Query: 17 EHNMPSGVITAIKFDVLTGEDIRTISALEIE-----------AAGQVVCSDLGLPNSSEV 65
EH P V + F VL+ + +S ++I A V+ LGL +
Sbjct: 20 EHRFPKRV-EKLVFSVLSSNALMKLSEVQITTPILYEHYPSPATNGVLDKRLGLSDKVGK 78
Query: 66 CTTCGTNDKKLCEGHFGAIKFPFSIVHPYFISEAAEILNKICPACKSIR 114
C TCG D K+C GHFG I + HP I++A +L+ +CP C ++
Sbjct: 79 CATCG-KDTKMCIGHFGTISLALPVFHPGLINDARTMLSIVCPFCSRVK 126