Miyakogusa Predicted Gene
- Lj0g3v0149989.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0149989.2 tr|G7KER5|G7KER5_MEDTR DNA-directed RNA
polymerase OS=Medicago truncatula GN=MTR_5g011000 PE=3
SV=1,72.8,0,seg,NULL; DNA-DIRECTED RNA POLYMERASE,NULL; beta and
beta-prime subunits of DNA dependent RNA-polyme,CUFF.9202.2
(1048 letters)
Database: trembl
41,451,118 sequences; 13,208,986,710 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
K7LMQ8_SOYBN (tr|K7LMQ8) DNA-directed RNA polymerase OS=Glycine ... 1583 0.0
I1JA29_SOYBN (tr|I1JA29) DNA-directed RNA polymerase OS=Glycine ... 1569 0.0
G7KER5_MEDTR (tr|G7KER5) DNA-directed RNA polymerase OS=Medicago... 1569 0.0
K7K551_SOYBN (tr|K7K551) DNA-directed RNA polymerase OS=Glycine ... 1567 0.0
B9GKP9_POPTR (tr|B9GKP9) DNA-directed RNA polymerase OS=Populus ... 1159 0.0
F6HUI3_VITVI (tr|F6HUI3) DNA-directed RNA polymerase OS=Vitis vi... 1139 0.0
K4CP21_SOLLC (tr|K4CP21) DNA-directed RNA polymerase OS=Solanum ... 1022 0.0
Q1L5X6_SOLLC (tr|Q1L5X6) DNA-directed RNA polymerase (Fragment) ... 1021 0.0
D7KU36_ARALL (tr|D7KU36) DNA-directed RNA polymerase OS=Arabidop... 1015 0.0
R0HUP7_9BRAS (tr|R0HUP7) Uncharacterized protein OS=Capsella rub... 1007 0.0
M5WEG2_PRUPE (tr|M5WEG2) Uncharacterized protein OS=Prunus persi... 1001 0.0
B9RC12_RICCO (tr|B9RC12) DNA-directed RNA polymerase OS=Ricinus ... 985 0.0
M4EFP9_BRARP (tr|M4EFP9) DNA-directed RNA polymerase OS=Brassica... 966 0.0
Q1L5X5_ANTMA (tr|Q1L5X5) DNA-directed RNA polymerase (Fragment) ... 928 0.0
M0TPQ4_MUSAM (tr|M0TPQ4) DNA-directed RNA polymerase OS=Musa acu... 799 0.0
J3M0K5_ORYBR (tr|J3M0K5) DNA-directed RNA polymerase OS=Oryza br... 756 0.0
J3MZZ4_ORYBR (tr|J3MZZ4) DNA-directed RNA polymerase OS=Oryza br... 753 0.0
C0JR68_MAIZE (tr|C0JR68) DNA-directed RNA polymerase OS=Zea mays... 747 0.0
C0JR65_MAIZE (tr|C0JR65) DNA-directed RNA polymerase OS=Zea mays... 747 0.0
B9G500_ORYSJ (tr|B9G500) DNA-directed RNA polymerase OS=Oryza sa... 718 0.0
B8BED0_ORYSI (tr|B8BED0) DNA-directed RNA polymerase OS=Oryza sa... 717 0.0
Q01JX0_ORYSA (tr|Q01JX0) DNA-directed RNA polymerase OS=Oryza sa... 705 0.0
M8C5N9_AEGTA (tr|M8C5N9) DNA-directed RNA polymerase III subunit... 679 0.0
B9FC30_ORYSJ (tr|B9FC30) DNA-directed RNA polymerase OS=Oryza sa... 676 0.0
B8AT49_ORYSI (tr|B8AT49) DNA-directed RNA polymerase OS=Oryza sa... 676 0.0
M7ZUZ1_TRIUA (tr|M7ZUZ1) DNA-directed RNA polymerase D subunit 1... 650 0.0
A5BZZ3_VITVI (tr|A5BZZ3) DNA-directed RNA polymerase OS=Vitis vi... 611 e-172
K3XDU8_SETIT (tr|K3XDU8) DNA-directed RNA polymerase OS=Setaria ... 580 e-162
M0VV71_HORVD (tr|M0VV71) DNA-directed RNA polymerase OS=Hordeum ... 504 e-140
M0VV73_HORVD (tr|M0VV73) DNA-directed RNA polymerase OS=Hordeum ... 504 e-140
M0VV72_HORVD (tr|M0VV72) DNA-directed RNA polymerase OS=Hordeum ... 504 e-139
M0VV69_HORVD (tr|M0VV69) DNA-directed RNA polymerase OS=Hordeum ... 504 e-139
M0VV68_HORVD (tr|M0VV68) DNA-directed RNA polymerase OS=Hordeum ... 503 e-139
M0VV74_HORVD (tr|M0VV74) DNA-directed RNA polymerase OS=Hordeum ... 487 e-134
M0VV70_HORVD (tr|M0VV70) DNA-directed RNA polymerase OS=Hordeum ... 485 e-134
C5YE51_SORBI (tr|C5YE51) DNA-directed RNA polymerase OS=Sorghum ... 477 e-131
I1HLK0_BRADI (tr|I1HLK0) Uncharacterized protein OS=Brachypodium... 421 e-114
M0VV76_HORVD (tr|M0VV76) DNA-directed RNA polymerase OS=Hordeum ... 416 e-113
M0VV75_HORVD (tr|M0VV75) DNA-directed RNA polymerase OS=Hordeum ... 416 e-113
I1PP12_ORYGL (tr|I1PP12) Uncharacterized protein OS=Oryza glaber... 390 e-105
C0JR66_MAIZE (tr|C0JR66) DNA-directed RNA polymerase OS=Zea mays... 363 1e-97
M4FIT1_BRARP (tr|M4FIT1) Uncharacterized protein OS=Brassica rap... 362 6e-97
D8RLP4_SELML (tr|D8RLP4) DNA-directed RNA polymerase OS=Selagine... 329 5e-87
D8RN79_SELML (tr|D8RN79) DNA-directed RNA polymerase OS=Selagine... 325 5e-86
Q1L5X9_MARPO (tr|Q1L5X9) DNA-directed RNA polymerase (Fragment) ... 324 2e-85
Q1L5X8_9BRYO (tr|Q1L5X8) DNA-directed RNA polymerase (Fragment) ... 315 9e-83
Q7XTZ3_ORYSJ (tr|Q7XTZ3) DNA-directed RNA polymerase OS=Oryza sa... 301 9e-79
Q1L5Y1_9MONI (tr|Q1L5Y1) DNA-directed RNA polymerase (Fragment) ... 285 8e-74
M5XM01_PRUPE (tr|M5XM01) Uncharacterized protein OS=Prunus persi... 273 3e-70
Q0JAW4_ORYSJ (tr|Q0JAW4) Os04g0572600 protein OS=Oryza sativa su... 266 3e-68
A9SIX8_PHYPA (tr|A9SIX8) DNA-directed RNA polymerase OS=Physcomi... 266 3e-68
K4B027_SOLLC (tr|K4B027) DNA-directed RNA polymerase OS=Solanum ... 259 3e-66
M0SC38_MUSAM (tr|M0SC38) DNA-directed RNA polymerase OS=Musa acu... 242 8e-61
A9SIR4_PHYPA (tr|A9SIR4) DNA-directed RNA polymerase OS=Physcomi... 241 1e-60
K3YP74_SETIT (tr|K3YP74) DNA-directed RNA polymerase OS=Setaria ... 236 4e-59
Q1L5X7_SOLLC (tr|Q1L5X7) DNA-directed RNA polymerase (Fragment) ... 231 8e-58
M8BMS2_AEGTA (tr|M8BMS2) DNA-directed RNA polymerase II subunit ... 230 3e-57
J3L9M9_ORYBR (tr|J3L9M9) DNA-directed RNA polymerase OS=Oryza br... 224 1e-55
Q0IZR2_ORYSJ (tr|Q0IZR2) Os09g0555200 protein (Fragment) OS=Oryz... 212 8e-52
D7LEE8_ARALL (tr|D7LEE8) DNA-directed RNA polymerase OS=Arabidop... 206 6e-50
M0XPZ5_HORVD (tr|M0XPZ5) DNA-directed RNA polymerase OS=Hordeum ... 201 1e-48
M8C0F8_AEGTA (tr|M8C0F8) DNA-directed RNA polymerase II subunit ... 201 2e-48
M4C7I4_BRARP (tr|M4C7I4) DNA-directed RNA polymerase OS=Brassica... 199 7e-48
Q5D868_SPIOL (tr|Q5D868) DNA-directed RNA polymerase (Fragment) ... 198 1e-47
K3Y4N1_SETIT (tr|K3Y4N1) DNA-directed RNA polymerase OS=Setaria ... 197 2e-47
R0FV63_9BRAS (tr|R0FV63) Uncharacterized protein OS=Capsella rub... 196 6e-47
M0WRB9_HORVD (tr|M0WRB9) DNA-directed RNA polymerase OS=Hordeum ... 187 2e-44
M0WRB8_HORVD (tr|M0WRB8) DNA-directed RNA polymerase OS=Hordeum ... 187 2e-44
Q1L5Y0_9EMBR (tr|Q1L5Y0) DNA-directed RNA polymerase (Fragment) ... 186 5e-44
K7M0Q7_SOYBN (tr|K7M0Q7) DNA-directed RNA polymerase OS=Glycine ... 186 5e-44
K7MDF9_SOYBN (tr|K7MDF9) DNA-directed RNA polymerase OS=Glycine ... 184 1e-43
K7MDF5_SOYBN (tr|K7MDF5) DNA-directed RNA polymerase OS=Glycine ... 184 2e-43
I1IV91_BRADI (tr|I1IV91) DNA-directed RNA polymerase OS=Brachypo... 183 3e-43
C5XJ93_SORBI (tr|C5XJ93) DNA-directed RNA polymerase (Fragment) ... 182 8e-43
I1QR54_ORYGL (tr|I1QR54) Uncharacterized protein OS=Oryza glaber... 181 2e-42
K7MDF7_SOYBN (tr|K7MDF7) DNA-directed RNA polymerase OS=Glycine ... 180 3e-42
I1MIR6_SOYBN (tr|I1MIR6) DNA-directed RNA polymerase OS=Glycine ... 179 4e-42
D8RCH5_SELML (tr|D8RCH5) DNA-directed RNA polymerase (Fragment) ... 177 3e-41
M1C2W7_SOLTU (tr|M1C2W7) Uncharacterized protein OS=Solanum tube... 173 3e-40
G7LG09_MEDTR (tr|G7LG09) DNA-directed RNA polymerase OS=Medicago... 172 6e-40
B9GWX9_POPTR (tr|B9GWX9) DNA-directed RNA polymerase OS=Populus ... 166 4e-38
J3L864_ORYBR (tr|J3L864) DNA-directed RNA polymerase OS=Oryza br... 166 6e-38
B9GM06_POPTR (tr|B9GM06) DNA-directed RNA polymerase OS=Populus ... 160 3e-36
B9EWM0_ORYSJ (tr|B9EWM0) DNA-directed RNA polymerase OS=Oryza sa... 153 4e-34
Q5JJW0_ORYSJ (tr|Q5JJW0) DNA-directed RNA polymerase OS=Oryza sa... 145 7e-32
I1NXC6_ORYGL (tr|I1NXC6) DNA-directed RNA polymerase OS=Oryza gl... 144 2e-31
B3T303_9ARCH (tr|B3T303) DNA-directed RNA polymerase OS=uncultur... 144 2e-31
C5XUR7_SORBI (tr|C5XUR7) DNA-directed RNA polymerase OS=Sorghum ... 143 4e-31
E6N7C0_9ARCH (tr|E6N7C0) DNA-directed RNA polymerase OS=Candidat... 139 5e-30
I3D413_9ARCH (tr|I3D413) DNA-directed RNA polymerase OS=Candidat... 134 2e-28
D8T4Y5_SELML (tr|D8T4Y5) DNA-directed RNA polymerase (Fragment) ... 134 2e-28
I7AW35_9ASCO (tr|I7AW35) DNA-directed RNA polymerase (Fragment) ... 131 2e-27
Q5S1Y0_9HOMO (tr|Q5S1Y0) DNA-directed RNA polymerase (Fragment) ... 130 2e-27
M4N7H2_9ASCO (tr|M4N7H2) RNA polymerase I (Fragment) OS=Ascoidea... 130 3e-27
A9TA93_PHYPA (tr|A9TA93) DNA-directed RNA polymerase (Fragment) ... 129 5e-27
A7J588_9LECA (tr|A7J588) DNA-directed RNA polymerase (Fragment) ... 129 8e-27
A1YIA8_9ASCO (tr|A1YIA8) DNA-directed RNA polymerase (Fragment) ... 129 1e-26
I7B909_9ASCO (tr|I7B909) DNA-directed RNA polymerase (Fragment) ... 128 1e-26
A8A925_IGNH4 (tr|A8A925) DNA-directed RNA polymerase OS=Ignicocc... 128 1e-26
I7B591_9ASCO (tr|I7B591) DNA-directed RNA polymerase (Fragment) ... 128 1e-26
Q8MX30_NAEGR (tr|Q8MX30) DNA-directed RNA polymerase (Fragment) ... 128 1e-26
A3MXZ0_PYRCJ (tr|A3MXZ0) DNA-directed RNA polymerase OS=Pyrobacu... 128 1e-26
G3AI95_SPAPN (tr|G3AI95) DNA-directed RNA polymerase OS=Spathasp... 128 1e-26
D2VNK8_NAEGR (tr|D2VNK8) DNA-directed RNA polymerase OS=Naegleri... 128 2e-26
F4FXU7_METCR (tr|F4FXU7) DNA-directed RNA polymerase OS=Metallos... 128 2e-26
A7J592_9LECA (tr|A7J592) DNA-directed RNA polymerase (Fragment) ... 127 2e-26
A7J5B1_9LECA (tr|A7J5B1) DNA-directed RNA polymerase (Fragment) ... 127 2e-26
A5H2F1_9LECA (tr|A5H2F1) DNA-directed RNA polymerase (Fragment) ... 127 2e-26
C4YN85_CANAW (tr|C4YN85) DNA-directed RNA polymerase OS=Candida ... 127 3e-26
Q30BD8_CYAPA (tr|Q30BD8) DNA-directed RNA polymerase (Fragment) ... 127 3e-26
I7B946_PICGM (tr|I7B946) DNA-directed RNA polymerase (Fragment) ... 127 3e-26
I7AAY5_9ASCO (tr|I7AAY5) DNA-directed RNA polymerase (Fragment) ... 127 3e-26
Q5ACI7_CANAL (tr|Q5ACI7) DNA-directed RNA polymerase OS=Candida ... 127 3e-26
Q6FQS9_CANGA (tr|Q6FQS9) DNA-directed RNA polymerase OS=Candida ... 127 3e-26
A5H2E9_9LECA (tr|A5H2E9) DNA-directed RNA polymerase (Fragment) ... 127 3e-26
F8QSY1_TRIFO (tr|F8QSY1) DNA-directed RNA polymerase (Fragment) ... 127 4e-26
I7A098_PICET (tr|I7A098) DNA-directed RNA polymerase (Fragment) ... 126 4e-26
I7AAY0_9ASCO (tr|I7AAY0) DNA-directed RNA polymerase (Fragment) ... 126 4e-26
G1XDW8_ARTOA (tr|G1XDW8) DNA-directed RNA polymerase OS=Arthrobo... 126 4e-26
G8JWY7_ERECY (tr|G8JWY7) DNA-directed RNA polymerase OS=Eremothe... 126 5e-26
M9N0J3_ASHGS (tr|M9N0J3) FADR086Cp OS=Ashbya gossypii FDAG1 GN=F... 126 6e-26
F3KKS8_9ARCH (tr|F3KKS8) DNA-directed RNA polymerase OS=Candidat... 125 8e-26
A7J586_9LECA (tr|A7J586) DNA-directed RNA polymerase (Fragment) ... 125 8e-26
M4N8J2_9ASCO (tr|M4N8J2) RNA polymerase I (Fragment) OS=Ascoidea... 125 8e-26
I7AAV0_9ASCO (tr|I7AAV0) DNA-directed RNA polymerase (Fragment) ... 125 9e-26
I7B547_9SACH (tr|I7B547) DNA-directed RNA polymerase (Fragment) ... 125 1e-25
I7AB23_9ASCO (tr|I7AB23) DNA-directed RNA polymerase (Fragment) ... 125 1e-25
G7E0H8_MIXOS (tr|G7E0H8) DNA-directed RNA polymerase OS=Mixia os... 125 1e-25
A1YIC6_NEOFR (tr|A1YIC6) DNA-directed RNA polymerase (Fragment) ... 125 1e-25
F8QSY8_9EUKA (tr|F8QSY8) DNA-directed RNA polymerase (Fragment) ... 125 1e-25
Q5QHU1_AMAPH (tr|Q5QHU1) DNA-directed RNA polymerase (Fragment) ... 125 1e-25
F8TBT6_9EUKA (tr|F8TBT6) DNA-directed RNA polymerase (Fragment) ... 124 2e-25
Q2PYP9_9FUNG (tr|Q2PYP9) DNA-directed RNA polymerase (Fragment) ... 124 2e-25
F8QSX8_9EUKA (tr|F8QSX8) DNA-directed RNA polymerase (Fragment) ... 124 2e-25
A1YIB7_GLOMO (tr|A1YIB7) DNA-directed RNA polymerase (Fragment) ... 124 2e-25
I7B913_9ASCO (tr|I7B913) DNA-directed RNA polymerase (Fragment) ... 124 2e-25
K5W9B5_PHACS (tr|K5W9B5) DNA-directed RNA polymerase OS=Phaneroc... 124 2e-25
A7J587_9LECA (tr|A7J587) DNA-directed RNA polymerase (Fragment) ... 124 2e-25
R7SV30_DICSQ (tr|R7SV30) Beta and beta-prime subunits of DNA dep... 124 2e-25
O00820_ACACA (tr|O00820) DNA-directed RNA polymerase (Fragment) ... 124 3e-25
A7J590_9LECA (tr|A7J590) DNA-directed RNA polymerase (Fragment) ... 124 3e-25
A9X971_9LECA (tr|A9X971) DNA-directed RNA polymerase (Fragment) ... 123 4e-25
B5RSM9_DEBHA (tr|B5RSM9) DNA-directed RNA polymerase OS=Debaryom... 123 4e-25
K0B5J8_9ARCH (tr|K0B5J8) DNA-directed RNA polymerase OS=Candidat... 123 4e-25
I7AW86_9ASCO (tr|I7AW86) DNA-directed RNA polymerase (Fragment) ... 123 4e-25
F9CUN5_9ARCH (tr|F9CUN5) DNA-directed RNA polymerase OS=Candidat... 123 4e-25
M7WX53_RHOTO (tr|M7WX53) DNA-directed RNA polymerase II subunit ... 123 4e-25
I7A069_9ASCO (tr|I7A069) DNA-directed RNA polymerase (Fragment) ... 123 4e-25
Q25203_9CAEN (tr|Q25203) DNA-directed RNA polymerase (Fragment) ... 123 5e-25
M5FQ84_DACSP (tr|M5FQ84) Subunit of DNA dependent RNA-polymerase... 123 5e-25
A5H2E6_9LECA (tr|A5H2E6) DNA-directed RNA polymerase (Fragment) ... 122 5e-25
I7AW69_9ASCO (tr|I7AW69) DNA-directed RNA polymerase (Fragment) ... 122 6e-25
I7AB08_DEBHN (tr|I7AB08) DNA-directed RNA polymerase (Fragment) ... 122 6e-25
C3U0B6_9EURO (tr|C3U0B6) DNA-directed RNA polymerase (Fragment) ... 122 7e-25
Q0MVT3_9EURO (tr|Q0MVT3) DNA-directed RNA polymerase (Fragment) ... 122 8e-25
F8QSX3_9EUKA (tr|F8QSX3) DNA-directed RNA polymerase (Fragment) ... 122 8e-25
A5H283_9LECA (tr|A5H283) DNA-directed RNA polymerase (Fragment) ... 122 9e-25
A7J584_9LECA (tr|A7J584) DNA-directed RNA polymerase (Fragment) ... 122 1e-24
Q2PYR1_9FUNG (tr|Q2PYR1) DNA-directed RNA polymerase (Fragment) ... 122 1e-24
I7A0C1_9ASCO (tr|I7A0C1) DNA-directed RNA polymerase (Fragment) ... 122 1e-24
A1RWW5_THEPD (tr|A1RWW5) DNA-directed RNA polymerase OS=Thermofi... 122 1e-24
F0ZE84_DICPU (tr|F0ZE84) DNA-directed RNA polymerase OS=Dictyost... 122 1e-24
I7AB12_MILFA (tr|I7AB12) DNA-directed RNA polymerase (Fragment) ... 122 1e-24
C0SE75_PARBP (tr|C0SE75) DNA-directed RNA polymerase OS=Paracocc... 121 1e-24
G8XZU9_PICSO (tr|G8XZU9) DNA-directed RNA polymerase OS=Pichia s... 121 1e-24
G5CDC2_9ASCO (tr|G5CDC2) DNA-directed RNA polymerase (Fragment) ... 121 1e-24
Q6CL79_KLULA (tr|Q6CL79) DNA-directed RNA polymerase OS=Kluyvero... 121 1e-24
C5E245_LACTC (tr|C5E245) DNA-directed RNA polymerase OS=Lachance... 121 1e-24
A9Q9N4_9EURO (tr|A9Q9N4) DNA-directed RNA polymerase (Fragment) ... 121 2e-24
Q0PQ13_9LECA (tr|Q0PQ13) DNA-directed RNA polymerase (Fragment) ... 121 2e-24
I7B560_9ASCO (tr|I7B560) DNA-directed RNA polymerase (Fragment) ... 121 2e-24
L0PB90_PNEJ8 (tr|L0PB90) DNA-directed RNA polymerase OS=Pneumocy... 121 2e-24
Q0PPZ6_9PEZI (tr|Q0PPZ6) DNA-directed RNA polymerase (Fragment) ... 121 2e-24
A5H275_9LECA (tr|A5H275) DNA-directed RNA polymerase (Fragment) ... 121 2e-24
A5H2E7_9LECA (tr|A5H2E7) DNA-directed RNA polymerase (Fragment) ... 121 2e-24
E1FWN6_LOALO (tr|E1FWN6) DNA-directed RNA polymerase OS=Loa loa ... 121 2e-24
Q0PPZ8_9LECA (tr|Q0PPZ8) DNA-directed RNA polymerase (Fragment) ... 121 2e-24
G8Y2U0_PICSO (tr|G8Y2U0) DNA-directed RNA polymerase OS=Pichia s... 121 2e-24
A5H276_9LECA (tr|A5H276) DNA-directed RNA polymerase (Fragment) ... 121 2e-24
I7A0C5_SCHPM (tr|I7A0C5) DNA-directed RNA polymerase (Fragment) ... 121 2e-24
G0W3I3_NAUDC (tr|G0W3I3) DNA-directed RNA polymerase OS=Naumovoz... 121 2e-24
C1GHL1_PARBD (tr|C1GHL1) DNA-directed RNA polymerase OS=Paracocc... 121 2e-24
Q0PQ02_9LECA (tr|Q0PQ02) DNA-directed RNA polymerase (Fragment) ... 121 2e-24
H2APV4_KAZAF (tr|H2APV4) DNA-directed RNA polymerase OS=Kazachst... 121 2e-24
G0SWB1_RHOG2 (tr|G0SWB1) DNA-directed RNA polymerase OS=Rhodotor... 120 2e-24
B8M2Y2_TALSN (tr|B8M2Y2) DNA-directed RNA polymerase OS=Talaromy... 120 2e-24
C5PAJ4_COCP7 (tr|C5PAJ4) DNA-directed RNA polymerase OS=Coccidio... 120 2e-24
I7B8Z2_LACTH (tr|I7B8Z2) DNA-directed RNA polymerase (Fragment) ... 120 2e-24
A5H297_9LECA (tr|A5H297) DNA-directed RNA polymerase (Fragment) ... 120 2e-24
J3KB55_COCIM (tr|J3KB55) DNA-directed RNA polymerase OS=Coccidio... 120 2e-24
E9CY52_COCPS (tr|E9CY52) DNA-directed RNA polymerase OS=Coccidio... 120 2e-24
E5R1G4_ARTGP (tr|E5R1G4) DNA-directed RNA polymerase OS=Arthrode... 120 3e-24
D2VMG0_NAEGR (tr|D2VMG0) DNA-directed RNA polymerase OS=Naegleri... 120 3e-24
Q5I2R7_9HOMO (tr|Q5I2R7) DNA-directed RNA polymerase (Fragment) ... 120 3e-24
A5H2F8_9LECA (tr|A5H2F8) DNA-directed RNA polymerase (Fragment) ... 120 3e-24
A5H274_9LECA (tr|A5H274) DNA-directed RNA polymerase (Fragment) ... 120 3e-24
G9M7Z7_9FUNG (tr|G9M7Z7) DNA-directed RNA polymerase (Fragment) ... 120 3e-24
R7SAL6_TREMS (tr|R7SAL6) Uncharacterized protein OS=Tremella mes... 120 3e-24
Q9NJK2_9MYRI (tr|Q9NJK2) DNA-directed RNA polymerase (Fragment) ... 120 3e-24
A1YIA6_TRIRU (tr|A1YIA6) DNA-directed RNA polymerase (Fragment) ... 120 3e-24
I7B966_9ASCO (tr|I7B966) DNA-directed RNA polymerase (Fragment) ... 120 3e-24
I7B543_9SACH (tr|I7B543) DNA-directed RNA polymerase (Fragment) ... 120 3e-24
I7B5C3_9ASCO (tr|I7B5C3) DNA-directed RNA polymerase (Fragment) ... 120 3e-24
I7B961_9ASCO (tr|I7B961) DNA-directed RNA polymerase (Fragment) ... 120 3e-24
E7R7W7_PICAD (tr|E7R7W7) DNA-directed RNA polymerase OS=Pichia a... 120 3e-24
C3U0A1_9EURO (tr|C3U0A1) DNA-directed RNA polymerase (Fragment) ... 120 3e-24
A9Q9N6_9EURO (tr|A9Q9N6) DNA-directed RNA polymerase (Fragment) ... 120 3e-24
I7AW73_9ASCO (tr|I7AW73) DNA-directed RNA polymerase (Fragment) ... 120 4e-24
A5H2F3_9LECA (tr|A5H2F3) DNA-directed RNA polymerase (Fragment) ... 120 4e-24
A5H2E2_9LECA (tr|A5H2E2) DNA-directed RNA polymerase (Fragment) ... 120 4e-24
Q0PQ10_9LECA (tr|Q0PQ10) DNA-directed RNA polymerase (Fragment) ... 120 4e-24
Q9BNP9_9MYRI (tr|Q9BNP9) DNA-directed RNA polymerase (Fragment) ... 120 4e-24
F4S9X8_MELLP (tr|F4S9X8) DNA-directed RNA polymerase OS=Melampso... 120 4e-24
Q1L5Y5_9VIRI (tr|Q1L5Y5) DNA-directed RNA polymerase (Fragment) ... 120 4e-24
B6QAY2_PENMQ (tr|B6QAY2) DNA-directed RNA polymerase OS=Penicill... 119 5e-24
I7B971_9ASCO (tr|I7B971) DNA-directed RNA polymerase (Fragment) ... 119 5e-24
A9Q9S1_9EURO (tr|A9Q9S1) DNA-directed RNA polymerase (Fragment) ... 119 5e-24
M0VCV5_HORVD (tr|M0VCV5) Uncharacterized protein OS=Hordeum vulg... 119 5e-24
I7B5D0_9ASCO (tr|I7B5D0) DNA-directed RNA polymerase (Fragment) ... 119 5e-24
Q0PQ00_9LECA (tr|Q0PQ00) DNA-directed RNA polymerase (Fragment) ... 119 5e-24
M4N648_9ASCO (tr|M4N648) RNA polymerase I (Fragment) OS=Nadsonia... 119 5e-24
A9Q9N3_9EURO (tr|A9Q9N3) DNA-directed RNA polymerase (Fragment) ... 119 5e-24
A9Q9L3_9EURO (tr|A9Q9L3) DNA-directed RNA polymerase (Fragment) ... 119 5e-24
A5H279_9LECA (tr|A5H279) DNA-directed RNA polymerase (Fragment) ... 119 6e-24
A9Q9T5_9EURO (tr|A9Q9T5) DNA-directed RNA polymerase (Fragment) ... 119 6e-24
F2SXT8_TRIRC (tr|F2SXT8) DNA-directed RNA polymerase OS=Trichoph... 119 6e-24
J4IAY2_FIBRA (tr|J4IAY2) DNA-directed RNA polymerase OS=Fibropor... 119 6e-24
A9Q9T4_9EURO (tr|A9Q9T4) DNA-directed RNA polymerase (Fragment) ... 119 6e-24
A8PU11_BRUMA (tr|A8PU11) DNA-directed RNA polymerase OS=Brugia m... 119 6e-24
C1H3Q4_PARBA (tr|C1H3Q4) DNA-directed RNA polymerase OS=Paracocc... 119 6e-24
A5H286_9LECA (tr|A5H286) DNA-directed RNA polymerase (Fragment) ... 119 6e-24
E6R8Q5_CRYGW (tr|E6R8Q5) DNA-directed RNA polymerase OS=Cryptoco... 119 6e-24
Q0PPZ5_9LECA (tr|Q0PPZ5) DNA-directed RNA polymerase (Fragment) ... 119 7e-24
A5E7R0_LODEL (tr|A5E7R0) DNA-directed RNA polymerase OS=Lodderom... 119 7e-24
Q6CBQ3_YARLI (tr|Q6CBQ3) DNA-directed RNA polymerase OS=Yarrowia... 119 7e-24
A5H2F5_9LECA (tr|A5H2F5) DNA-directed RNA polymerase (Fragment) ... 119 7e-24
A9X969_9LECA (tr|A9X969) DNA-directed RNA polymerase (Fragment) ... 119 7e-24
I7A065_9ASCO (tr|I7A065) DNA-directed RNA polymerase (Fragment) ... 119 7e-24
A5H277_9LECA (tr|A5H277) DNA-directed RNA polymerase (Fragment) ... 119 8e-24
M7X4L8_RHOTO (tr|M7X4L8) DNA-directed RNA polymerase III subunit... 119 8e-24
I7B5B3_9ASCO (tr|I7B5B3) DNA-directed RNA polymerase (Fragment) ... 119 8e-24
A5H278_9LECA (tr|A5H278) DNA-directed RNA polymerase (Fragment) ... 119 8e-24
A9Q9P4_9EURO (tr|A9Q9P4) DNA-directed RNA polymerase (Fragment) ... 119 9e-24
A1YIC0_9FUNG (tr|A1YIC0) DNA-directed RNA polymerase (Fragment) ... 119 9e-24
C3U0B2_9EURO (tr|C3U0B2) DNA-directed RNA polymerase (Fragment) ... 119 9e-24
D4D6M6_TRIVH (tr|D4D6M6) DNA-directed RNA polymerase OS=Trichoph... 119 9e-24
Q0PQ03_9LECA (tr|Q0PQ03) DNA-directed RNA polymerase (Fragment) ... 119 1e-23
A9Q9P7_9EURO (tr|A9Q9P7) DNA-directed RNA polymerase (Fragment) ... 119 1e-23
C3U099_9EURO (tr|C3U099) DNA-directed RNA polymerase (Fragment) ... 119 1e-23
G0RMT8_HYPJQ (tr|G0RMT8) DNA-directed RNA polymerase OS=Hypocrea... 119 1e-23
I7A0B8_PICPA (tr|I7A0B8) DNA-directed RNA polymerase (Fragment) ... 118 1e-23
I4Y8P0_WALSC (tr|I4Y8P0) DNA-directed RNA polymerase OS=Wallemia... 118 1e-23
Q0PQ01_9LECA (tr|Q0PQ01) DNA-directed RNA polymerase (Fragment) ... 118 1e-23
M4N608_9ASCO (tr|M4N608) RNA polymerase I (Fragment) OS=Schizobl... 118 1e-23
F2PRD9_TRIEC (tr|F2PRD9) DNA-directed RNA polymerase OS=Trichoph... 118 1e-23
R7VH83_9ANNE (tr|R7VH83) Uncharacterized protein OS=Capitella te... 118 1e-23
F0XS83_GROCL (tr|F0XS83) DNA-directed RNA polymerase OS=Grosmann... 118 1e-23
A9Q9S3_9EURO (tr|A9Q9S3) DNA-directed RNA polymerase (Fragment) ... 118 1e-23
I7A0A5_9ASCO (tr|I7A0A5) DNA-directed RNA polymerase (Fragment) ... 118 1e-23
I7A0A2_9ASCO (tr|I7A0A2) DNA-directed RNA polymerase (Fragment) ... 118 1e-23
Q5I3E1_9HOMO (tr|Q5I3E1) DNA-directed RNA polymerase (Fragment) ... 118 1e-23
I7AB31_YARLL (tr|I7AB31) DNA-directed RNA polymerase (Fragment) ... 118 1e-23
A9Q9S5_9EURO (tr|A9Q9S5) DNA-directed RNA polymerase (Fragment) ... 118 1e-23
A9Q9S6_9EURO (tr|A9Q9S6) DNA-directed RNA polymerase (Fragment) ... 118 1e-23
F2QW17_PICP7 (tr|F2QW17) DNA-directed RNA polymerase OS=Komagata... 118 1e-23
C4R4Y0_PICPG (tr|C4R4Y0) DNA-directed RNA polymerase OS=Komagata... 118 1e-23
D4AV18_ARTBC (tr|D4AV18) DNA-directed RNA polymerase OS=Arthrode... 118 1e-23
C3U0A5_9EURO (tr|C3U0A5) DNA-directed RNA polymerase (Fragment) ... 118 1e-23
F8QSX2_9EUKA (tr|F8QSX2) DNA-directed RNA polymerase (Fragment) ... 118 1e-23
I7AW00_9ASCO (tr|I7AW00) DNA-directed RNA polymerase (Fragment) ... 118 1e-23
C3U0A7_9EURO (tr|C3U0A7) DNA-directed RNA polymerase (Fragment) ... 118 1e-23
Q5I2R4_9HOMO (tr|Q5I2R4) DNA-directed RNA polymerase (Fragment) ... 118 1e-23
Q0PQ07_9PEZI (tr|Q0PQ07) DNA-directed RNA polymerase (Fragment) ... 118 1e-23
A5H289_9LECA (tr|A5H289) DNA-directed RNA polymerase (Fragment) ... 118 1e-23
I7A060_9SACH (tr|I7A060) DNA-directed RNA polymerase (Fragment) ... 118 1e-23
R8BGC8_9PEZI (tr|R8BGC8) Putative dna-directed rna polymerase ii... 118 2e-23
I7AWA5_9ASCO (tr|I7AWA5) DNA-directed RNA polymerase (Fragment) ... 118 2e-23
I7B5E4_TRIVR (tr|I7B5E4) DNA-directed RNA polymerase (Fragment) ... 118 2e-23
A7J5B0_9LECA (tr|A7J5B0) DNA-directed RNA polymerase (Fragment) ... 118 2e-23
A9Q9R2_9EURO (tr|A9Q9R2) DNA-directed RNA polymerase (Fragment) ... 118 2e-23
C4Y380_CLAL4 (tr|C4Y380) DNA-directed RNA polymerase OS=Clavispo... 118 2e-23
A5H2E5_9LECA (tr|A5H2E5) DNA-directed RNA polymerase (Fragment) ... 118 2e-23
A7J593_9LECA (tr|A7J593) DNA-directed RNA polymerase (Fragment) ... 118 2e-23
F8QSX5_9EUKA (tr|F8QSX5) DNA-directed RNA polymerase OS=Pentatri... 118 2e-23
A9Q9T8_9EURO (tr|A9Q9T8) DNA-directed RNA polymerase (Fragment) ... 118 2e-23
K4N3B4_9EUKA (tr|K4N3B4) DNA-directed RNA polymerase OS=Amoeboap... 117 2e-23
A5H295_9LECA (tr|A5H295) DNA-directed RNA polymerase (Fragment) ... 117 2e-23
A9Q9S8_9EURO (tr|A9Q9S8) DNA-directed RNA polymerase (Fragment) ... 117 2e-23
A9Q9L8_9EURO (tr|A9Q9L8) DNA-directed RNA polymerase (Fragment) ... 117 2e-23
A5H2E3_9LECA (tr|A5H2E3) DNA-directed RNA polymerase (Fragment) ... 117 2e-23
I7AW60_9ASCO (tr|I7AW60) DNA-directed RNA polymerase (Fragment) ... 117 2e-23
I7A054_KLUMA (tr|I7A054) DNA-directed RNA polymerase (Fragment) ... 117 2e-23
C4Y5N4_CLAL4 (tr|C4Y5N4) DNA-directed RNA polymerase OS=Clavispo... 117 2e-23
A4YCQ9_METS5 (tr|A4YCQ9) DNA-directed RNA polymerase OS=Metallos... 117 2e-23
I7B955_9ASCO (tr|I7B955) DNA-directed RNA polymerase (Fragment) ... 117 2e-23
A1CNZ4_ASPCL (tr|A1CNZ4) DNA-directed RNA polymerase OS=Aspergil... 117 2e-23
C3U064_9EURO (tr|C3U064) DNA-directed RNA polymerase (Fragment) ... 117 2e-23
A9Q9U0_9EURO (tr|A9Q9U0) DNA-directed RNA polymerase (Fragment) ... 117 2e-23
A1YIB2_SMICU (tr|A1YIB2) DNA-directed RNA polymerase (Fragment) ... 117 2e-23
I2H5V7_TETBL (tr|I2H5V7) DNA-directed RNA polymerase OS=Tetrapis... 117 3e-23
D7DAF3_STAHD (tr|D7DAF3) DNA-directed RNA polymerase OS=Staphylo... 117 3e-23
M3C1A1_9PEZI (tr|M3C1A1) DNA-directed RNA polymerase OS=Mycospha... 117 3e-23
Q0MVT4_9EURO (tr|Q0MVT4) DNA-directed RNA polymerase (Fragment) ... 117 3e-23
A9Q9N2_9EURO (tr|A9Q9N2) DNA-directed RNA polymerase (Fragment) ... 117 3e-23
M7NUD9_9ASCO (tr|M7NUD9) Uncharacterized protein OS=Pneumocystis... 117 3e-23
A9Q9T9_9EURO (tr|A9Q9T9) DNA-directed RNA polymerase (Fragment) ... 117 3e-23
I7B554_CLALS (tr|I7B554) DNA-directed RNA polymerase (Fragment) ... 117 3e-23
F8PAY6_SERL9 (tr|F8PAY6) DNA-directed RNA polymerase OS=Serpula ... 117 3e-23
A9Q9M7_9EURO (tr|A9Q9M7) DNA-directed RNA polymerase (Fragment) ... 117 3e-23
A9Q9T3_9EURO (tr|A9Q9T3) DNA-directed RNA polymerase (Fragment) ... 117 3e-23
C4JY44_UNCRE (tr|C4JY44) DNA-directed RNA polymerase OS=Uncinoca... 117 3e-23
F8QG95_SERL3 (tr|F8QG95) DNA-directed RNA polymerase OS=Serpula ... 117 3e-23
A3DMP4_STAMF (tr|A3DMP4) DNA-directed RNA polymerase OS=Staphylo... 117 3e-23
A9Q9P5_9EURO (tr|A9Q9P5) DNA-directed RNA polymerase (Fragment) ... 117 3e-23
Q2PYR7_SMICU (tr|Q2PYR7) DNA-directed RNA polymerase (Fragment) ... 117 3e-23
A3CS84_METMJ (tr|A3CS84) DNA-directed RNA polymerase OS=Methanoc... 117 3e-23
G0W7R2_NAUDC (tr|G0W7R2) DNA-directed RNA polymerase OS=Naumovoz... 117 3e-23
Q55QA7_CRYNB (tr|Q55QA7) DNA-directed RNA polymerase OS=Cryptoco... 117 4e-23
I7B8Y2_9ASCO (tr|I7B8Y2) DNA-directed RNA polymerase (Fragment) ... 117 4e-23
C3U075_9EURO (tr|C3U075) DNA-directed RNA polymerase (Fragment) ... 117 4e-23
G3XRG6_ASPNA (tr|G3XRG6) DNA-directed RNA polymerase OS=Aspergil... 117 4e-23
C5MI79_CANTT (tr|C5MI79) DNA-directed RNA polymerase (Fragment) ... 117 4e-23
D2RIB4_ARCPA (tr|D2RIB4) DNA-directed RNA polymerase OS=Archaeog... 117 4e-23
A2QAT7_ASPNC (tr|A2QAT7) DNA-directed RNA polymerase OS=Aspergil... 117 4e-23
G4T8R1_PIRID (tr|G4T8R1) DNA-directed RNA polymerase OS=Piriform... 116 4e-23
Q5KFV9_CRYNJ (tr|Q5KFV9) DNA-directed RNA polymerase OS=Cryptoco... 116 4e-23
A5H293_9LECA (tr|A5H293) DNA-directed RNA polymerase (Fragment) ... 116 4e-23
G7XJ17_ASPKW (tr|G7XJ17) DNA-directed RNA polymerase OS=Aspergil... 116 4e-23
F9X8Y2_MYCGM (tr|F9X8Y2) DNA-directed RNA polymerase OS=Mycospha... 116 4e-23
H2KQI4_CLOSI (tr|H2KQI4) DNA-directed RNA polymerase OS=Clonorch... 116 4e-23
J9VX09_CRYNH (tr|J9VX09) DNA-directed RNA polymerase OS=Cryptoco... 116 4e-23
F2TC89_AJEDA (tr|F2TC89) DNA-directed RNA polymerase OS=Ajellomy... 116 4e-23
C5K0T9_AJEDS (tr|C5K0T9) DNA-directed RNA polymerase OS=Ajellomy... 116 4e-23
C5GKA7_AJEDR (tr|C5GKA7) DNA-directed RNA polymerase OS=Ajellomy... 116 4e-23
Q0PPZ3_9LECA (tr|Q0PPZ3) DNA-directed RNA polymerase (Fragment) ... 116 4e-23
E3Q4C8_COLGM (tr|E3Q4C8) DNA-directed RNA polymerase OS=Colletot... 116 4e-23
A9Q9M5_9EURO (tr|A9Q9M5) DNA-directed RNA polymerase (Fragment) ... 116 4e-23
H3G223_PRIPA (tr|H3G223) DNA-directed RNA polymerase OS=Pristion... 116 5e-23
A9Q9T6_9EURO (tr|A9Q9T6) DNA-directed RNA polymerase (Fragment) ... 116 5e-23
A1YIB8_9GLOM (tr|A1YIB8) DNA-directed RNA polymerase (Fragment) ... 116 5e-23
Q756K2_ASHGO (tr|Q756K2) DNA-directed RNA polymerase OS=Ashbya g... 116 5e-23
M9N5P0_ASHGS (tr|M9N5P0) FAER252Cp OS=Ashbya gossypii FDAG1 GN=F... 116 5e-23
A9Q9M2_9EURO (tr|A9Q9M2) DNA-directed RNA polymerase (Fragment) ... 116 5e-23
G9P9P3_HYPAI (tr|G9P9P3) DNA-directed RNA polymerase OS=Hypocrea... 116 6e-23
A9Q9M4_9EURO (tr|A9Q9M4) DNA-directed RNA polymerase (Fragment) ... 116 6e-23
C8Z6G2_YEAS8 (tr|C8Z6G2) DNA-directed RNA polymerase OS=Saccharo... 116 6e-23
A7J5B4_9LECA (tr|A7J5B4) DNA-directed RNA polymerase (Fragment) ... 116 6e-23
G0ULQ7_TRYCI (tr|G0ULQ7) DNA-directed RNA polymerase OS=Trypanos... 116 6e-23
G3B9E4_CANTC (tr|G3B9E4) DNA-directed RNA polymerase OS=Candida ... 116 6e-23
A7J581_9LECA (tr|A7J581) DNA-directed RNA polymerase (Fragment) ... 116 6e-23
D3BJK4_POLPA (tr|D3BJK4) DNA-directed RNA polymerase OS=Polyspho... 116 6e-23
G4VIM5_SCHMA (tr|G4VIM5) DNA-directed RNA polymerase OS=Schistos... 116 6e-23
Q2GTS6_CHAGB (tr|Q2GTS6) DNA-directed RNA polymerase OS=Chaetomi... 116 7e-23
F0UGB6_AJEC8 (tr|F0UGB6) DNA-directed RNA polymerase OS=Ajellomy... 116 7e-23
J7S636_KAZNA (tr|J7S636) DNA-directed RNA polymerase OS=Kazachst... 116 7e-23
Q2PYR6_9FUNG (tr|Q2PYR6) DNA-directed RNA polymerase (Fragment) ... 115 7e-23
G9MIB4_HYPVG (tr|G9MIB4) DNA-directed RNA polymerase OS=Hypocrea... 115 7e-23
A6QYA7_AJECN (tr|A6QYA7) DNA-directed RNA polymerase OS=Ajellomy... 115 7e-23
A5H2G1_9LECA (tr|A5H2G1) DNA-directed RNA polymerase (Fragment) ... 115 7e-23
A9Q9R0_9EURO (tr|A9Q9R0) DNA-directed RNA polymerase (Fragment) ... 115 7e-23
I7AB21_PACTA (tr|I7AB21) DNA-directed RNA polymerase (Fragment) ... 115 7e-23
C5DXL0_ZYGRC (tr|C5DXL0) DNA-directed RNA polymerase OS=Zygosacc... 115 7e-23
A5H2F2_9LECA (tr|A5H2F2) DNA-directed RNA polymerase (Fragment) ... 115 7e-23
I7AW78_9SACH (tr|I7AW78) DNA-directed RNA polymerase (Fragment) ... 115 7e-23
I7B5D9_DIPMG (tr|I7B5D9) DNA-directed RNA polymerase (Fragment) ... 115 8e-23
G7DUE3_MIXOS (tr|G7DUE3) DNA-directed RNA polymerase OS=Mixia os... 115 8e-23
K1WVV1_MARBU (tr|K1WVV1) DNA-directed RNA polymerase OS=Marssoni... 115 8e-23
A9Q9P0_9EURO (tr|A9Q9P0) DNA-directed RNA polymerase (Fragment) ... 115 8e-23
Q95W43_TRYCR (tr|Q95W43) DNA-directed RNA polymerase OS=Trypanos... 115 8e-23
I7AB35_9ASCO (tr|I7AB35) DNA-directed RNA polymerase (Fragment) ... 115 8e-23
E9FDR8_METAR (tr|E9FDR8) DNA-directed RNA polymerase OS=Metarhiz... 115 8e-23
Q4DDX5_TRYCC (tr|Q4DDX5) DNA-directed RNA polymerase OS=Trypanos... 115 9e-23
I7B5B8_9SACH (tr|I7B5B8) DNA-directed RNA polymerase (Fragment) ... 115 9e-23
A9Q9P1_9EURO (tr|A9Q9P1) DNA-directed RNA polymerase (Fragment) ... 115 9e-23
J7S3R1_KAZNA (tr|J7S3R1) DNA-directed RNA polymerase OS=Kazachst... 115 9e-23
I7B551_9ASCO (tr|I7B551) DNA-directed RNA polymerase (Fragment) ... 115 9e-23
A9Q9L5_9EURO (tr|A9Q9L5) DNA-directed RNA polymerase (Fragment) ... 115 9e-23
Q8ISB0_TRYCR (tr|Q8ISB0) DNA-directed RNA polymerase OS=Trypanos... 115 9e-23
E3JUM8_PUCGT (tr|E3JUM8) DNA-directed RNA polymerase OS=Puccinia... 115 9e-23
I7AAV6_ZYGRO (tr|I7AAV6) DNA-directed RNA polymerase (Fragment) ... 115 9e-23
A5H287_9LECA (tr|A5H287) DNA-directed RNA polymerase (Fragment) ... 115 9e-23
K0KNL6_WICCF (tr|K0KNL6) DNA-directed RNA polymerase OS=Wickerha... 115 9e-23
A1D1U9_NEOFI (tr|A1D1U9) DNA-directed RNA polymerase OS=Neosarto... 115 9e-23
Q5A0Z3_CANAL (tr|Q5A0Z3) DNA-directed RNA polymerase OS=Candida ... 115 1e-22
Q25151_HELST (tr|Q25151) DNA-directed RNA polymerase (Fragment) ... 115 1e-22
K7XFL8_9EURO (tr|K7XFL8) DNA-directed RNA polymerase (Fragment) ... 115 1e-22
Q2PYS8_9FUNG (tr|Q2PYS8) DNA-directed RNA polymerase (Fragment) ... 115 1e-22
C5FCL2_ARTOC (tr|C5FCL2) DNA-directed RNA polymerase OS=Arthrode... 115 1e-22
K2NKG9_TRYCR (tr|K2NKG9) DNA-directed RNA polymerase OS=Trypanos... 115 1e-22
Q4WRY3_ASPFU (tr|Q4WRY3) DNA-directed RNA polymerase OS=Neosarto... 115 1e-22
B0XMU6_ASPFC (tr|B0XMU6) DNA-directed RNA polymerase OS=Neosarto... 115 1e-22
B9WF61_CANDC (tr|B9WF61) DNA-directed RNA polymerase OS=Candida ... 115 1e-22
M3J5V2_CANMA (tr|M3J5V2) DNA-directed RNA polymerase (Fragment) ... 115 1e-22
Q5A164_CANAL (tr|Q5A164) DNA-directed RNA polymerase OS=Candida ... 115 1e-22
G0V8Z9_NAUCC (tr|G0V8Z9) DNA-directed RNA polymerase OS=Naumovoz... 115 1e-22
G8YNQ4_PICSO (tr|G8YNQ4) DNA-directed RNA polymerase OS=Pichia s... 115 1e-22
Q9NJJ7_SCOPO (tr|Q9NJJ7) DNA-directed RNA polymerase (Fragment) ... 115 1e-22
H6C0S8_EXODN (tr|H6C0S8) DNA-directed RNA polymerase OS=Exophial... 115 1e-22
C3U0A6_9EURO (tr|C3U0A6) DNA-directed RNA polymerase (Fragment) ... 115 1e-22
R9ADA8_WALIC (tr|R9ADA8) DNA-directed RNA polymerase III subunit... 115 1e-22
B3T7L4_9ARCH (tr|B3T7L4) DNA-directed RNA polymerase OS=uncultur... 115 1e-22
D2V0G9_NAEGR (tr|D2V0G9) DNA-directed RNA polymerase OS=Naegleri... 115 1e-22
C4YGE6_CANAW (tr|C4YGE6) DNA-directed RNA polymerase OS=Candida ... 115 1e-22
I7B8Y7_YEASX (tr|I7B8Y7) DNA-directed RNA polymerase (Fragment) ... 115 1e-22
B8N404_ASPFN (tr|B8N404) DNA-directed RNA polymerase OS=Aspergil... 115 1e-22
C3U0C3_9EURO (tr|C3U0C3) DNA-directed RNA polymerase (Fragment) ... 115 1e-22
B5VFD0_YEAS6 (tr|B5VFD0) DNA-directed RNA polymerase (Fragment) ... 115 1e-22
I7AAW3_9SACH (tr|I7AAW3) DNA-directed RNA polymerase (Fragment) ... 115 1e-22
H2C6W1_9CREN (tr|H2C6W1) DNA-directed RNA polymerase OS=Metallos... 115 1e-22
G8B659_CANPC (tr|G8B659) DNA-directed RNA polymerase OS=Candida ... 115 1e-22
B9WN64_CANDC (tr|B9WN64) DNA-directed RNA polymerase OS=Candida ... 115 1e-22
C7GKZ2_YEAS2 (tr|C7GKZ2) DNA-directed RNA polymerase OS=Saccharo... 115 1e-22
Q9HGZ5_ASPOZ (tr|Q9HGZ5) DNA-directed RNA polymerase OS=Aspergil... 115 1e-22
Q2ULA0_ASPOR (tr|Q2ULA0) DNA-directed RNA polymerase OS=Aspergil... 115 1e-22
I8TRP3_ASPO3 (tr|I8TRP3) DNA-directed RNA polymerase OS=Aspergil... 115 1e-22
C3U0B1_9EURO (tr|C3U0B1) DNA-directed RNA polymerase (Fragment) ... 115 1e-22
C3U097_9EURO (tr|C3U097) DNA-directed RNA polymerase (Fragment) ... 115 1e-22
B3LH31_YEAS1 (tr|B3LH31) DNA-directed RNA polymerase OS=Saccharo... 115 1e-22
A9Q9M8_9EURO (tr|A9Q9M8) DNA-directed RNA polymerase (Fragment) ... 115 1e-22
A9Q9L7_9EURO (tr|A9Q9L7) DNA-directed RNA polymerase (Fragment) ... 115 1e-22
A9Q9L6_9EURO (tr|A9Q9L6) DNA-directed RNA polymerase (Fragment) ... 115 1e-22
C3ZES3_BRAFL (tr|C3ZES3) DNA-directed RNA polymerase OS=Branchio... 115 1e-22
N1PAM7_YEASX (tr|N1PAM7) Rpo21p OS=Saccharomyces cerevisiae CEN.... 115 1e-22
G2WC21_YEASK (tr|G2WC21) DNA-directed RNA polymerase OS=Saccharo... 115 1e-22
A6ZXI7_YEAS7 (tr|A6ZXI7) DNA-directed RNA polymerase OS=Saccharo... 115 1e-22
Q9NJL4_9CRUS (tr|Q9NJL4) DNA-directed RNA polymerase (Fragment) ... 115 1e-22
J8Q412_SACAR (tr|J8Q412) DNA-directed RNA polymerase OS=Saccharo... 115 1e-22
I7A0B2_9ASCO (tr|I7A0B2) DNA-directed RNA polymerase (Fragment) ... 115 1e-22
Q0MVT1_EXODE (tr|Q0MVT1) DNA-directed RNA polymerase (Fragment) ... 115 1e-22
A7TTU2_VANPO (tr|A7TTU2) DNA-directed RNA polymerase (Fragment) ... 115 1e-22
M4FRP9_MAGP6 (tr|M4FRP9) DNA-directed RNA polymerase OS=Magnapor... 115 1e-22
F8QSY2_9EUKA (tr|F8QSY2) DNA-directed RNA polymerase (Fragment) ... 114 2e-22
A1YIB3_9FUNG (tr|A1YIB3) DNA-directed RNA polymerase (Fragment) ... 114 2e-22
A9Q9N7_9EURO (tr|A9Q9N7) DNA-directed RNA polymerase (Fragment) ... 114 2e-22
Q2HDK0_CHAGB (tr|Q2HDK0) DNA-directed RNA polymerase OS=Chaetomi... 114 2e-22
Q6JTW2_9BILA (tr|Q6JTW2) DNA-directed RNA polymerase (Fragment) ... 114 2e-22
H2U2N2_TAKRU (tr|H2U2N2) DNA-directed RNA polymerase OS=Takifugu... 114 2e-22
A9Q9S9_9EURO (tr|A9Q9S9) DNA-directed RNA polymerase (Fragment) ... 114 2e-22
I7B959_9ASCO (tr|I7B959) DNA-directed RNA polymerase (Fragment) ... 114 2e-22
H2KUH4_CLOSI (tr|H2KUH4) DNA-directed RNA polymerase OS=Clonorch... 114 2e-22
E9E6C1_METAQ (tr|E9E6C1) DNA-directed RNA polymerase OS=Metarhiz... 114 2e-22
F4B7V6_ACIHW (tr|F4B7V6) DNA-directed RNA polymerase OS=Acidianu... 114 2e-22
N4V0X5_COLOR (tr|N4V0X5) DNA-dependent RNA polymerase ii largest... 114 2e-22
I7A049_TORDE (tr|I7A049) DNA-directed RNA polymerase (Fragment) ... 114 2e-22
G8YLC5_PICSO (tr|G8YLC5) DNA-directed RNA polymerase OS=Pichia s... 114 2e-22
Q84KP6_CYAME (tr|Q84KP6) DNA-directed RNA polymerase OS=Cyanidio... 114 2e-22
M1VGW3_CYAME (tr|M1VGW3) DNA-directed RNA polymerase OS=Cyanidio... 114 2e-22
G8ZRH9_TORDC (tr|G8ZRH9) DNA-directed RNA polymerase OS=Torulasp... 114 2e-22
A7TNS6_VANPO (tr|A7TNS6) DNA-directed RNA polymerase OS=Vanderwa... 114 2e-22
A9Q9T2_9EURO (tr|A9Q9T2) DNA-directed RNA polymerase (Fragment) ... 114 2e-22
E9BZL9_CAPO3 (tr|E9BZL9) DNA-directed RNA polymerase OS=Capsaspo... 114 2e-22
J3P867_GAGT3 (tr|J3P867) DNA-directed RNA polymerase OS=Gaeumann... 114 2e-22
C5JRK1_AJEDS (tr|C5JRK1) DNA-directed RNA polymerase OS=Ajellomy... 114 2e-22
H3CXP9_TETNG (tr|H3CXP9) DNA-directed RNA polymerase OS=Tetraodo... 114 3e-22
I7B5D4_9ASCO (tr|I7B5D4) DNA-directed RNA polymerase (Fragment) ... 114 3e-22
I7AB17_9ASCO (tr|I7AB17) DNA-directed RNA polymerase (Fragment) ... 114 3e-22
Q6CMC7_KLULA (tr|Q6CMC7) DNA-directed RNA polymerase OS=Kluyvero... 114 3e-22
B6H9U6_PENCW (tr|B6H9U6) DNA-directed RNA polymerase OS=Penicill... 114 3e-22
A0RXW9_CENSY (tr|A0RXW9) DNA-directed RNA polymerase OS=Cenarcha... 114 3e-22
K0BAM8_9ARCH (tr|K0BAM8) DNA-directed RNA polymerase OS=Candidat... 114 3e-22
K7UAT9_9HYPO (tr|K7UAT9) DNA-directed RNA polymerase OS=Neotypho... 114 3e-22
F2UIP5_SALS5 (tr|F2UIP5) DNA-directed RNA polymerase OS=Salpingo... 114 3e-22
E9EC10_METAQ (tr|E9EC10) DNA-directed RNA polymerase OS=Metarhiz... 114 3e-22
I7AW04_9ASCO (tr|I7AW04) DNA-directed RNA polymerase (Fragment) ... 114 3e-22
K7X292_9EURO (tr|K7X292) DNA-directed RNA polymerase (Fragment) ... 114 3e-22
H8X2B4_CANO9 (tr|H8X2B4) DNA-directed RNA polymerase OS=Candida ... 114 3e-22
C5GRI8_AJEDR (tr|C5GRI8) DNA-directed RNA polymerase OS=Ajellomy... 114 3e-22
K7TLD6_9HYPO (tr|K7TLD6) DNA-directed RNA polymerase OS=Epichloe... 114 3e-22
I7AW23_9ASCO (tr|I7AW23) DNA-directed RNA polymerase (Fragment) ... 114 3e-22
I0Z9A9_9CHLO (tr|I0Z9A9) DNA-directed RNA polymerase OS=Coccomyx... 114 3e-22
G0TZQ4_TRYVY (tr|G0TZQ4) DNA-directed RNA polymerase (Fragment) ... 114 3e-22
Q0PPZ9_9EURO (tr|Q0PPZ9) DNA-directed RNA polymerase (Fragment) ... 114 3e-22
D3RWR8_FERPA (tr|D3RWR8) DNA-directed RNA polymerase OS=Ferroglo... 114 3e-22
I7AW14_ZYGMR (tr|I7AW14) DNA-directed RNA polymerase (Fragment) ... 114 3e-22
K9G6H4_PEND2 (tr|K9G6H4) DNA-directed RNA polymerase OS=Penicill... 114 3e-22
K9FLF3_PEND1 (tr|K9FLF3) DNA-directed RNA polymerase OS=Penicill... 114 3e-22
A9Q9M9_9EURO (tr|A9Q9M9) DNA-directed RNA polymerase (Fragment) ... 114 3e-22
B8MLB5_TALSN (tr|B8MLB5) DNA-directed RNA polymerase OS=Talaromy... 114 3e-22
C3U069_9EURO (tr|C3U069) DNA-directed RNA polymerase (Fragment) ... 113 3e-22
N1JNX2_ERYGR (tr|N1JNX2) DNA-directed RNA polymerase III subunit... 113 4e-22
G0Z3P3_9HYPO (tr|G0Z3P3) DNA-directed RNA polymerase (Fragment) ... 113 4e-22
K5X834_PHACS (tr|K5X834) DNA-directed RNA polymerase OS=Phaneroc... 113 4e-22
I7AAT9_WICCA (tr|I7AAT9) DNA-directed RNA polymerase (Fragment) ... 113 4e-22
I6NDX4_ERECY (tr|I6NDX4) DNA-directed RNA polymerase OS=Eremothe... 113 4e-22
A9Q9N0_9EURO (tr|A9Q9N0) DNA-directed RNA polymerase (Fragment) ... 113 4e-22
F1KQ31_ASCSU (tr|F1KQ31) DNA-directed RNA polymerase OS=Ascaris ... 113 4e-22
C3U068_9EURO (tr|C3U068) DNA-directed RNA polymerase (Fragment) ... 113 4e-22
K7TW30_NEOAO (tr|K7TW30) DNA-directed RNA polymerase OS=Neotypho... 113 4e-22
Q0D054_ASPTN (tr|Q0D054) DNA-directed RNA polymerase OS=Aspergil... 113 4e-22
Q5BF71_EMENI (tr|Q5BF71) DNA-directed RNA polymerase OS=Emericel... 113 4e-22
G0N244_CAEBE (tr|G0N244) DNA-directed RNA polymerase OS=Caenorha... 113 4e-22
K7TW01_9HYPO (tr|K7TW01) DNA-directed RNA polymerase OS=Epichloe... 113 4e-22
K1QQG7_CRAGI (tr|K1QQG7) DNA-directed RNA polymerase OS=Crassost... 113 4e-22
A9Q9N9_9EURO (tr|A9Q9N9) DNA-directed RNA polymerase (Fragment) ... 113 4e-22
I7B936_SCHOC (tr|I7B936) DNA-directed RNA polymerase (Fragment) ... 113 4e-22
I7A043_9SACH (tr|I7A043) DNA-directed RNA polymerase (Fragment) ... 113 4e-22
A9A460_NITMS (tr|A9A460) DNA-directed RNA polymerase OS=Nitrosop... 113 4e-22
K4E797_TRYCR (tr|K4E797) DNA-directed RNA polymerase (Fragment) ... 113 4e-22
A9Q9M0_9EURO (tr|A9Q9M0) DNA-directed RNA polymerase (Fragment) ... 113 4e-22
K7THT1_9HYPO (tr|K7THT1) DNA-directed RNA polymerase OS=Epichloe... 113 4e-22
>K7LMQ8_SOYBN (tr|K7LMQ8) DNA-directed RNA polymerase OS=Glycine max PE=3 SV=1
Length = 1454
Score = 1583 bits (4100), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 779/1042 (74%), Positives = 898/1042 (86%), Gaps = 16/1042 (1%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
MI+L+VRVLPISSVV INPLCCSPLRGDFDGDCLHGYIPQSV AR+ELNELVALDRQLIN
Sbjct: 418 MIALTVRVLPISSVVCINPLCCSPLRGDFDGDCLHGYIPQSVTARIELNELVALDRQLIN 477
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLC--DKKLTPPPSIIKAPSRNN 118
GQSGRNLLSLSQDSLTAAY+LMEDGVLLN+Y++QQLQML DK+L PP +++KAPS N+
Sbjct: 478 GQSGRNLLSLSQDSLTAAYLLMEDGVLLNVYQMQQLQMLSISDKRLIPP-AVVKAPSSNS 536
Query: 119 SLWSGKQLFSMLLPSNFDYSFPPNGVSVSDGELTSSFESSGWLRDSECNIFQRLVERFQD 178
SLWSGKQ+FSMLLP +FDYSFP +GV VSDGEL SS E+SGWLRDS+ N+FQ LVE +Q
Sbjct: 537 SLWSGKQIFSMLLPYDFDYSFPSDGVVVSDGELVSSSEASGWLRDSDYNVFQSLVEHYQG 596
Query: 179 KTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGLQEAEQACDFNQ 238
KTLN LY AQKVLCEWLSMTGF AR+NM+EEI YGLQ+AEQAC+F Q
Sbjct: 597 KTLNFLYTAQKVLCEWLSMTGFSVSLSDLYLSSDSYARKNMIEEIFYGLQDAEQACNFKQ 656
Query: 239 LLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHMFRNIQSLVDKY 298
LL+D YCDFLSGS+Q+S+N ++D D LNYE+ ISAALS+ SVDAFR +FRNIQSL DKY
Sbjct: 657 LLLDCYCDFLSGSIQESENAITVDADRLNYERQISAALSQASVDAFRQVFRNIQSLADKY 716
Query: 299 ASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCAAWNSEKGLNSM 358
A K NAFL MFKAGSKGNLLKLVQHSMCLG+Q+SLVRLSYR+PR LSCAAWNS+K L+S+
Sbjct: 717 ACKDNAFLAMFKAGSKGNLLKLVQHSMCLGMQNSLVRLSYRLPRHLSCAAWNSQKWLDSI 776
Query: 359 PMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNADLPGTLTRRLMF 418
M S TL+S+Q YIP+AVVESSFLTGLNPLECF HSV NRDSSFSD+ADLPGTLTRRLMF
Sbjct: 777 QMSSGTLESVQSYIPYAVVESSFLTGLNPLECFVHSVTNRDSSFSDHADLPGTLTRRLMF 836
Query: 419 FMRDLYQAYDGTVRNLYGNQLIQFSYDTDKDSSCDSGFQEGTVGGEPVGALSACAISEAA 478
FMRDL+ AYDGTVRNLYGNQLIQFSYD ++DSSCD GFQE +GGEPVGA+SACAISEAA
Sbjct: 837 FMRDLHDAYDGTVRNLYGNQLIQFSYDIEEDSSCDKGFQEYAIGGEPVGAISACAISEAA 896
Query: 479 YSALGQPISLLETSPLLNLKNVLECGSRKKSGDQTVSLFLSDKLGKQRYGFEYAALEVKN 538
YSALGQP+SLLETSPLLNLKNVLECGSRK++GDQTVSLFLS+KLGKQR+GFEYAALEVKN
Sbjct: 897 YSALGQPVSLLETSPLLNLKNVLECGSRKRNGDQTVSLFLSEKLGKQRHGFEYAALEVKN 956
Query: 539 YLERVMFSDIVSTVMIMFTPQ-SSSLEIFNPWVCHFHLDKEIVARRKLTVHSVIESLYRR 597
YLER++FS+IVSTVMI+FTP SS E ++PWVCHFHLDKEIV RRKL VHS+I+SLY+R
Sbjct: 957 YLERLLFSNIVSTVMIIFTPHDGSSQEKYSPWVCHFHLDKEIVTRRKLKVHSIIDSLYQR 1016
Query: 598 YESLTKESKVTFPNLKISSNRKCS-----KEGGYASLNKEKEDVDCISVTIVESSRSSAK 652
Y S K+SKV F NLKISS +KCS KEG S++K++ D DCI+VTIVE+S++ +
Sbjct: 1017 YYSQRKDSKVCFTNLKISS-KKCSADSMAKEGEDTSIDKKEGD-DCITVTIVENSKNPIQ 1074
Query: 653 LEAVRDLMIPFLLGTVIKGFLEIKKVDILWSNRSKVSNSYAGSSGELYLRVTMSSDGDSG 712
L++VRDL+IPFLLGT IKGFL++KKVD+LW+N+SKV NS G SGELYLRVT+SS+G G
Sbjct: 1075 LDSVRDLVIPFLLGTAIKGFLDVKKVDVLWNNQSKVKNSCNGFSGELYLRVTLSSEGSRG 1134
Query: 713 RFWGVLINHCHRIMPMIDWTRSHPDNIHHFCSAYGIDAGRQYFLHSLASATTETGKSILP 772
RFWGVL+N CH+IM +IDWTRSHPDNI+HF SAYGIDAG QYF +SLASAT++TGKSILP
Sbjct: 1135 RFWGVLLNLCHKIMHIIDWTRSHPDNINHFSSAYGIDAGWQYFFNSLASATSDTGKSILP 1194
Query: 773 KHLHLVANSLSASGEFVGLNAKGIGRQRKHASVSSPFVQACFSNPGTSFIKAAKSGVLDD 832
KHL LVANSLS SGEFVGLNAKG+ QRKHASVSSPFVQACF+NPG+ FIKAAKSGV D+
Sbjct: 1195 KHLCLVANSLSCSGEFVGLNAKGMALQRKHASVSSPFVQACFANPGSCFIKAAKSGVTDN 1254
Query: 833 LQGCLDALAWGKCMSMGTSGQFDIMHSEKVEEFPESADVYSLLIANFDQLNDKVDIPHYH 892
LQG LDALAWG C+SMGTSG FDI++SEKV +S +VY LL A+FD+ N+K H H
Sbjct: 1255 LQGSLDALAWGNCLSMGTSGMFDIIYSEKV---AKSGNVYELLEASFDKPNNKAGT-HLH 1310
Query: 893 NRSSNKCDSEFSRKNGGYALKEYKQSKSFIRNFVTVNDIQKLAFESRSILSRYSIDQVIS 952
SS+KC SEF KN GYALKE KQ K+ +RNFVTVNDIQKL F SR IL++YSID+++S
Sbjct: 1311 KYSSDKCGSEFRHKN-GYALKEGKQWKTILRNFVTVNDIQKLTFASRCILNKYSIDELLS 1369
Query: 953 DHDKITMLRVLHFHPRKNEKLGCGPADIKVGWHPVHKDSRCFHIIRSDESVEDFSYRKCI 1012
+ D+ TMLRVL+FHPRK+EK G GP DIKVGWHP +KDSRCFHI+R D +VEDFSYRKCI
Sbjct: 1370 ESDRSTMLRVLNFHPRKSEKFGIGPQDIKVGWHPKYKDSRCFHIVRIDGTVEDFSYRKCI 1429
Query: 1013 LRALEIVDPGKFRIQKKKWLGQ 1034
L AL+IVDP K +IQ+KKW G
Sbjct: 1430 LGALDIVDPKKSKIQEKKWSGH 1451
>I1JA29_SOYBN (tr|I1JA29) DNA-directed RNA polymerase OS=Glycine max PE=3 SV=2
Length = 1457
Score = 1569 bits (4063), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 770/1044 (73%), Positives = 894/1044 (85%), Gaps = 13/1044 (1%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
MISL+VRVLPISSVV INPLCCSPLRGDFDGDCLHGYIPQSV AR+ELNELVALDRQLIN
Sbjct: 418 MISLTVRVLPISSVVCINPLCCSPLRGDFDGDCLHGYIPQSVTARIELNELVALDRQLIN 477
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLC--DKKLTPPPSIIKAPSRNN 118
GQSGRNLLSLSQDSLTAAY+LMEDGVLLN+Y++QQLQML +K+L PP +++KAPS N+
Sbjct: 478 GQSGRNLLSLSQDSLTAAYLLMEDGVLLNVYQMQQLQMLSISNKRLIPP-AVVKAPSSNS 536
Query: 119 SLWSGKQLFSMLLPSNFDYSFPPNGVSVSDGELTSSFESSGWLRDSECNIFQRLVERFQD 178
SLW+GKQLFSMLLP +FDYSFP +GV VSDGEL SS E+SGWLRDS+ N+FQ LVE +Q
Sbjct: 537 SLWNGKQLFSMLLPYDFDYSFPSDGVVVSDGELVSSSEASGWLRDSDYNVFQSLVEHYQG 596
Query: 179 KTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGLQEAEQACDFNQ 238
KTLN LY AQKVLCEWLSMTGF ARENM+EEI YGLQ+AE+AC+F Q
Sbjct: 597 KTLNFLYAAQKVLCEWLSMTGFSVSLSDLYLSSDSYARENMIEEIFYGLQDAERACNFKQ 656
Query: 239 LLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHMFRNIQSLVDKY 298
LL+D+YCDFLSGSLQ+S+N +++ D LNYE+ ISA+LS+ SVDAFR +FRNIQSL DKY
Sbjct: 657 LLLDYYCDFLSGSLQESENAITVNADRLNYERQISASLSQASVDAFRQVFRNIQSLADKY 716
Query: 299 ASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCAAWNSEKGLNSM 358
A KGN+FL MFKAGSKGNLLKLVQHSMCLG+Q+SLVRLSYR+PR LSCA WNS+K ++S+
Sbjct: 717 ACKGNSFLAMFKAGSKGNLLKLVQHSMCLGMQNSLVRLSYRLPRHLSCADWNSQKWVDSI 776
Query: 359 PMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNADLPGTLTRRLMF 418
M S TL+S+Q YIP+AVVESSFLTGLNPLECF HSV NRDSSFSD+ADLPGTLTRRLMF
Sbjct: 777 QMSSGTLESVQSYIPYAVVESSFLTGLNPLECFVHSVTNRDSSFSDHADLPGTLTRRLMF 836
Query: 419 FMRDLYQAYDGTVRNLYGNQLIQFSYDTDKDSSCDSGFQEGTVGGEPVGALSACAISEAA 478
FMRDLY AYDGTVRNLYGNQLIQFSYD ++DSSC+ GFQ+ +GGE VGA+SACAISEAA
Sbjct: 837 FMRDLYDAYDGTVRNLYGNQLIQFSYDIEEDSSCNKGFQQYALGGESVGAISACAISEAA 896
Query: 479 YSALGQPISLLETSPLLNLKNVLECGSRKKSGDQTVSLFLSDKLGKQRYGFEYAALEVKN 538
YSALGQP+SLLETSPLLNLKNVLECGSRK++GDQTVSLFLS+KLGKQR+GFEYAALEVKN
Sbjct: 897 YSALGQPVSLLETSPLLNLKNVLECGSRKRNGDQTVSLFLSEKLGKQRHGFEYAALEVKN 956
Query: 539 YLERVMFSDIVSTVMIMFTPQSS-SLEIFNPWVCHFHLDKEIVARRKLTVHSVIESLYRR 597
YLER++FS+IVS VMI+FTP S S E ++PWVCHFHLDKEIV RRKL VHS+I+SLY+R
Sbjct: 957 YLERLLFSNIVSKVMIIFTPHDSRSQEKYSPWVCHFHLDKEIVTRRKLKVHSIIDSLYQR 1016
Query: 598 YESLTKESKVTFPNLKISSNRKCS-----KEGGYASLNKEKEDVDCISVTIVESSRSSAK 652
Y S K+SKV F NLKISS RKCS KEG S++KE+ D DCI VTIVE+S++ +
Sbjct: 1017 YYSQRKDSKVCFTNLKISS-RKCSADSMVKEGEDTSIDKEEGD-DCIMVTIVENSKNPIQ 1074
Query: 653 LEAVRDLMIPFLLGTVIKGFLEIKKVDILWSNRSKVSNSYAGSSGELYLRVTMSSDGDSG 712
L++VRDL+IPFLLGT I+GFL++KKVDILW+N+SKV+NS G SGELYLRVT+SS+G G
Sbjct: 1075 LDSVRDLVIPFLLGTAIQGFLDVKKVDILWNNQSKVTNSRNGFSGELYLRVTLSSEGSRG 1134
Query: 713 RFWGVLINHCHRIMPMIDWTRSHPDNIHHFCSAYGIDAGRQYFLHSLASATTETGKSILP 772
RFWGVL+ CH+IM +IDWTRSH DNI+HF SAYGIDAG QYF +SLA AT++TGKSILP
Sbjct: 1135 RFWGVLLKLCHKIMHIIDWTRSHTDNINHFSSAYGIDAGWQYFFNSLACATSDTGKSILP 1194
Query: 773 KHLHLVANSLSASGEFVGLNAKGIGRQRKHASVSSPFVQACFSNPGTSFIKAAKSGVLDD 832
KHL LVANSLS SGEFVGLNAKG+ QRKHASVSSPFVQACF+NPG+ FIKAAKSG D+
Sbjct: 1195 KHLCLVANSLSCSGEFVGLNAKGMALQRKHASVSSPFVQACFANPGSCFIKAAKSGATDN 1254
Query: 833 LQGCLDALAWGKCMSMGTSGQFDIMHSEKVEEFPESADVYSLLIANFDQLNDKVDIPHYH 892
LQG LD LAWG C+SMGTSG FD+++SEK + +S DVY LL A+FD+ N+K+ H H
Sbjct: 1255 LQGSLDGLAWGNCLSMGTSGMFDVIYSEKGHQVAKSVDVYELLEASFDKPNNKIGT-HLH 1313
Query: 893 NRSSNKCDSEFSRKNGGYALKEYKQSKSFIRNFVTVNDIQKLAFESRSILSRYSIDQVIS 952
SS+KC SEF KN GYALKE KQ K+ +RNFVTVNDIQKL F SR IL++YSID+++S
Sbjct: 1314 KYSSDKCGSEFRHKN-GYALKEGKQWKTILRNFVTVNDIQKLTFASRCILNKYSIDELLS 1372
Query: 953 DHDKITMLRVLHFHPRKNEKLGCGPADIKVGWHPVHKDSRCFHIIRSDESVEDFSYRKCI 1012
+ D+ TMLRVL+FHP K+EK G GP DIKVGWHP +KDSRCFHIIR+D +VEDFSYRKCI
Sbjct: 1373 ESDRSTMLRVLNFHPHKSEKFGIGPQDIKVGWHPKYKDSRCFHIIRTDGTVEDFSYRKCI 1432
Query: 1013 LRALEIVDPGKFRIQKKKWLGQDD 1036
L AL+IVDP K +IQ+KKW G D
Sbjct: 1433 LGALDIVDPKKSKIQEKKWSGHGD 1456
>G7KER5_MEDTR (tr|G7KER5) DNA-directed RNA polymerase OS=Medicago truncatula
GN=MTR_5g011000 PE=3 SV=1
Length = 1687
Score = 1569 bits (4062), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 758/1059 (71%), Positives = 879/1059 (83%), Gaps = 19/1059 (1%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
MI+L+VRVLPISSVVSINP+CCSPLRGDFDGDCLHGYIPQSV ARVELNELVALDRQLIN
Sbjct: 586 MIALTVRVLPISSVVSINPICCSPLRGDFDGDCLHGYIPQSVGARVELNELVALDRQLIN 645
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCDKKLTPPPSIIKAPSRNNSL 120
GQSG NLLSLSQDSLTAA++L+EDGV N+Y++QQL+MLC+K+LT P +I KAPS N
Sbjct: 646 GQSGGNLLSLSQDSLTAAHLLLEDGVGFNIYQVQQLEMLCNKELTSP-AIFKAPSSNTPF 704
Query: 121 WSGKQLFSMLLPSNFDYSFPPNGVSVSDGELTSSFESSGWLRDSECNIFQRLVERFQDKT 180
WSGKQLFSMLLPS FDY+FP N V V DGEL S ESSGWLRDSE N+FQ LVE FQ K
Sbjct: 705 WSGKQLFSMLLPSKFDYAFPSNDVFVKDGELISCSESSGWLRDSENNVFQSLVEHFQGKI 764
Query: 181 LNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGLQEAEQACDFNQLL 240
L++L+ AQK LCEWLSMTGF AR+NMMEEISYGL+ AEQACDFNQLL
Sbjct: 765 LDVLHGAQKALCEWLSMTGFSVSLSDLYLSSDSYARKNMMEEISYGLRVAEQACDFNQLL 824
Query: 241 VDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHMFRNIQSLVDKYAS 300
VDHY DFLS S ++++ ++D+D LN+E+ ISAA S+ SVDAFRH+FRNIQSL DK+A
Sbjct: 825 VDHYSDFLSASPEENEKFVTVDVDRLNHERQISAAQSQASVDAFRHVFRNIQSLADKHAC 884
Query: 301 KGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCAAWNSEKGLNSMPM 360
K N+FL MFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYR+PRELSCA WNS+KGL+SM M
Sbjct: 885 KDNSFLAMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRIPRELSCAGWNSQKGLHSMEM 944
Query: 361 FSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNADLPGTLTRRLMFFM 420
S+TL+ Q YI HAVVESSFLTGLNPLECF HSV NRDSSFSDNADLPGTLTRRLMFFM
Sbjct: 945 SSDTLEPKQSYIAHAVVESSFLTGLNPLECFVHSVTNRDSSFSDNADLPGTLTRRLMFFM 1004
Query: 421 RDLYQAYDGTVRNLYGNQLIQFSYDTDKDSSCDSGFQEGTVGGEPVGALSACAISEAAYS 480
RD+Y AYDGTVRNLYGNQLIQFSYD ++DSSCDS F+E +GGEPVGALSACA+SEAAYS
Sbjct: 1005 RDMYDAYDGTVRNLYGNQLIQFSYDAEEDSSCDSYFREDIIGGEPVGALSACAVSEAAYS 1064
Query: 481 ALGQPISLLETSPLLNLKNVLECGSRKKSGDQTVSLFLSDKLGKQRYGFEYAALEVKNYL 540
AL QPISLLE SPLLNLKNVLECGSRKK GDQTVSLFLS+K+GKQR GFEYAALEVKNYL
Sbjct: 1065 ALSQPISLLEASPLLNLKNVLECGSRKKGGDQTVSLFLSEKIGKQRNGFEYAALEVKNYL 1124
Query: 541 ERVMFSDIVSTVMIMFTPQSSSLEIFNPWVCHFHLDKEIVARRKLTVHSVIESLYRRYES 600
ER MFS+IVSTVMI+FTPQ S ++PWVCHFHLDKE V RRKL VHS+I+SLY++Y+S
Sbjct: 1125 ERYMFSNIVSTVMIIFTPQHCSQVKYSPWVCHFHLDKENVTRRKLEVHSIIDSLYQQYDS 1184
Query: 601 LTKESKVTFPNLKISS----------NRKCSK-------EGGYASLNKEKEDVDCISVTI 643
+ESKV P+LKISS + CSK EGG S+ EK+ DCI+V +
Sbjct: 1185 FRRESKVILPSLKISSKSGREVENKEGQTCSKCQDYKANEGGETSVGNEKDGEDCITVAV 1244
Query: 644 VESSRSSAKLEAVRDLMIPFLLGTVIKGFLEIKKVDILWSNRSKVSNSYAGSSGELYLRV 703
VE S++S +L++VR +IPFLL T IKGFLEIKKVDILW + KV+ SY GS+GELYLRV
Sbjct: 1245 VEDSKNSVQLDSVRKSLIPFLLQTAIKGFLEIKKVDILWKDLPKVTKSYNGSAGELYLRV 1304
Query: 704 TMSSDGDSGRFWGVLINHCHRIMPMIDWTRSHPDNIHHFCSAYGIDAGRQYFLHSLASAT 763
TMSS D+G FWG LINHCHRIMP+IDWTRSHPDNIHHFCSA+GIDAG Q++ H+L+SAT
Sbjct: 1305 TMSSGNDNGTFWGRLINHCHRIMPLIDWTRSHPDNIHHFCSAFGIDAGWQHYFHNLSSAT 1364
Query: 764 TETGKSILPKHLHLVANSLSASGEFVGLNAKGIGRQRKHASVSSPFVQACFSNPGTSFIK 823
++TGKSILPKHL LVANSLSASGEFVGLNAKG+ RQRKHASVSSPFVQACFSNPG+SF+K
Sbjct: 1365 SDTGKSILPKHLRLVANSLSASGEFVGLNAKGMARQRKHASVSSPFVQACFSNPGSSFLK 1424
Query: 824 AAKSGVLDDLQGCLDALAWGKCMSMGTSGQFDIMHSEKVEEFPESADVYSLLIANFDQLN 883
AAKSG++D+LQG LDALAWG C+ MGT GQFDI++SEKVEE +S DVY LL +F+Q++
Sbjct: 1425 AAKSGIVDNLQGNLDALAWGNCLPMGTGGQFDIIYSEKVEEINKSVDVYGLLETSFNQMD 1484
Query: 884 DKVDIPHYHNRSSNKCDSEFSRKNGGYALKEYKQSKSFIRNFVTVNDIQKLAFESRSILS 943
+++IP SS KC S+F KNGGY KE KQ KS +RNF+T NDIQ+L F++R IL+
Sbjct: 1485 QEINIPQSRKYSSGKCSSDFRSKNGGYTPKEPKQWKSVLRNFMTANDIQRLTFDARVILN 1544
Query: 944 RYSIDQVISDHDKITMLRVLHFHPRKNEKLGCGPADIKVGWHPVHKDSRCFHIIRSDESV 1003
+Y ID+ +S+ DK+T+++VLHFHPR++EK G GP +IKVGWHP DSRCF IIR D SV
Sbjct: 1545 KYQIDETLSETDKLTIMKVLHFHPRRDEKFGSGPQNIKVGWHPEFTDSRCFFIIRKDGSV 1604
Query: 1004 EDFSYRKCILRALEIVDPGKFRIQKKKWLGQDDIVELKK 1042
EDFSYRKCIL AL+I+DP K +IQ+ +W G D+ E KK
Sbjct: 1605 EDFSYRKCILGALDIIDPKKSKIQRNRWSGNGDM-EAKK 1642
>K7K551_SOYBN (tr|K7K551) DNA-directed RNA polymerase OS=Glycine max PE=3 SV=1
Length = 1454
Score = 1567 bits (4058), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 771/1044 (73%), Positives = 894/1044 (85%), Gaps = 16/1044 (1%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
MISL+VRVLPISSVV INPLCCSPLRGDFDGDCLHGYIPQSV AR+ELNELVALDRQLIN
Sbjct: 418 MISLTVRVLPISSVVCINPLCCSPLRGDFDGDCLHGYIPQSVTARIELNELVALDRQLIN 477
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLC--DKKLTPPPSIIKAPSRNN 118
GQSGRNLLSLSQDSLTAAY+LMEDGVLLN+Y++QQLQML +K+L PP +++KAPS N+
Sbjct: 478 GQSGRNLLSLSQDSLTAAYLLMEDGVLLNVYQMQQLQMLSISNKRLIPP-AVVKAPSSNS 536
Query: 119 SLWSGKQLFSMLLPSNFDYSFPPNGVSVSDGELTSSFESSGWLRDSECNIFQRLVERFQD 178
SLW+GKQLFSMLLP +FDYSFP +GV VSDGEL SS E+SGWLRDS+ N+FQ LVE +Q
Sbjct: 537 SLWNGKQLFSMLLPYDFDYSFPSDGVVVSDGELVSSSEASGWLRDSDYNVFQSLVEHYQG 596
Query: 179 KTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGLQEAEQACDFNQ 238
KTLN LY AQKVLCEWLSMTGF ARENM+EEI YGLQ+AE+AC+F Q
Sbjct: 597 KTLNFLYAAQKVLCEWLSMTGFSVSLSDLYLSSDSYARENMIEEIFYGLQDAERACNFKQ 656
Query: 239 LLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHMFRNIQSLVDKY 298
LL+D+YCDFLSGSLQ+S+N +++ D LNYE+ ISA+LS+ SVDAFR +FRNIQSL DKY
Sbjct: 657 LLLDYYCDFLSGSLQESENAITVNADRLNYERQISASLSQASVDAFRQVFRNIQSLADKY 716
Query: 299 ASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCAAWNSEKGLNSM 358
A KGN+FL MFKAGSKGNLLKLVQHSMCLG+Q+SLVRLSYR+PR LSCA WNS+K ++S+
Sbjct: 717 ACKGNSFLAMFKAGSKGNLLKLVQHSMCLGMQNSLVRLSYRLPRHLSCADWNSQKWVDSI 776
Query: 359 PMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNADLPGTLTRRLMF 418
M S TL+S+Q YIP+AVVESSFLTGLNPLECF HSV NRDSSFSD+ADLPGTLTRRLMF
Sbjct: 777 QMSSGTLESVQSYIPYAVVESSFLTGLNPLECFVHSVTNRDSSFSDHADLPGTLTRRLMF 836
Query: 419 FMRDLYQAYDGTVRNLYGNQLIQFSYDTDKDSSCDSGFQEGTVGGEPVGALSACAISEAA 478
FMRDLY AYDGTVRNLYGNQLIQFSYD ++DSSC+ GFQ+ +GGE VGA+SACAISEAA
Sbjct: 837 FMRDLYDAYDGTVRNLYGNQLIQFSYDIEEDSSCNKGFQQYALGGESVGAISACAISEAA 896
Query: 479 YSALGQPISLLETSPLLNLKNVLECGSRKKSGDQTVSLFLSDKLGKQRYGFEYAALEVKN 538
YSALGQP+SLLETSPLLNLKNVLECGSRK++GDQTVSLFLS+KLGKQR+GFEYAALEVKN
Sbjct: 897 YSALGQPVSLLETSPLLNLKNVLECGSRKRNGDQTVSLFLSEKLGKQRHGFEYAALEVKN 956
Query: 539 YLERVMFSDIVSTVMIMFTPQSS-SLEIFNPWVCHFHLDKEIVARRKLTVHSVIESLYRR 597
YLER++FS+IVS VMI+FTP S S E ++PWVCHFHLDKEIV RRKL VHS+I+SLY+R
Sbjct: 957 YLERLLFSNIVSKVMIIFTPHDSRSQEKYSPWVCHFHLDKEIVTRRKLKVHSIIDSLYQR 1016
Query: 598 YESLTKESKVTFPNLKISSNRKCS-----KEGGYASLNKEKEDVDCISVTIVESSRSSAK 652
Y S K+SKV F NLKISS RKCS KEG S++KE+ D DCI VTIVE+S++ +
Sbjct: 1017 YYSQRKDSKVCFTNLKISS-RKCSADSMVKEGEDTSIDKEEGD-DCIMVTIVENSKNPIQ 1074
Query: 653 LEAVRDLMIPFLLGTVIKGFLEIKKVDILWSNRSKVSNSYAGSSGELYLRVTMSSDGDSG 712
L++VRDL+IPFLLGT I+GFL++KKVDILW+N+SKV+NS G SGELYLRVT+SS+G G
Sbjct: 1075 LDSVRDLVIPFLLGTAIQGFLDVKKVDILWNNQSKVTNSRNGFSGELYLRVTLSSEGSRG 1134
Query: 713 RFWGVLINHCHRIMPMIDWTRSHPDNIHHFCSAYGIDAGRQYFLHSLASATTETGKSILP 772
RFWGVL+ CH+IM +IDWTRSH DNI+HF SAYGIDAG QYF +SLA AT++TGKSILP
Sbjct: 1135 RFWGVLLKLCHKIMHIIDWTRSHTDNINHFSSAYGIDAGWQYFFNSLACATSDTGKSILP 1194
Query: 773 KHLHLVANSLSASGEFVGLNAKGIGRQRKHASVSSPFVQACFSNPGTSFIKAAKSGVLDD 832
KHL LVANSLS SGEFVGLNAKG+ QRKHASVSSPFVQACF+NPG+ FIKAAKSG D+
Sbjct: 1195 KHLCLVANSLSCSGEFVGLNAKGMALQRKHASVSSPFVQACFANPGSCFIKAAKSGATDN 1254
Query: 833 LQGCLDALAWGKCMSMGTSGQFDIMHSEKVEEFPESADVYSLLIANFDQLNDKVDIPHYH 892
LQG LD LAWG C+SMGTSG FD+++SEKV +S DVY LL A+FD+ N+K+ H H
Sbjct: 1255 LQGSLDGLAWGNCLSMGTSGMFDVIYSEKV---AKSVDVYELLEASFDKPNNKIGT-HLH 1310
Query: 893 NRSSNKCDSEFSRKNGGYALKEYKQSKSFIRNFVTVNDIQKLAFESRSILSRYSIDQVIS 952
SS+KC SEF KN GYALKE KQ K+ +RNFVTVNDIQKL F SR IL++YSID+++S
Sbjct: 1311 KYSSDKCGSEFRHKN-GYALKEGKQWKTILRNFVTVNDIQKLTFASRCILNKYSIDELLS 1369
Query: 953 DHDKITMLRVLHFHPRKNEKLGCGPADIKVGWHPVHKDSRCFHIIRSDESVEDFSYRKCI 1012
+ D+ TMLRVL+FHP K+EK G GP DIKVGWHP +KDSRCFHIIR+D +VEDFSYRKCI
Sbjct: 1370 ESDRSTMLRVLNFHPHKSEKFGIGPQDIKVGWHPKYKDSRCFHIIRTDGTVEDFSYRKCI 1429
Query: 1013 LRALEIVDPGKFRIQKKKWLGQDD 1036
L AL+IVDP K +IQ+KKW G D
Sbjct: 1430 LGALDIVDPKKSKIQEKKWSGHGD 1453
>B9GKP9_POPTR (tr|B9GKP9) DNA-directed RNA polymerase OS=Populus trichocarpa
GN=NRPD901 PE=3 SV=1
Length = 1517
Score = 1159 bits (2997), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 590/1059 (55%), Positives = 766/1059 (72%), Gaps = 48/1059 (4%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
+I+LSV+VLP+ SV++INPLCC P R DFDGDCLHGY+PQSV RVEL ELV+LD+QL N
Sbjct: 461 LIALSVKVLPVPSVLAINPLCCPPFRADFDGDCLHGYVPQSVDTRVELTELVSLDKQLTN 520
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCDKKLTPPPSIIKAPSRNNSL 120
QSGRNLLSLSQDSLTAA++++ED V L+ +E+QQLQM ++ P +KAPS N +
Sbjct: 521 WQSGRNLLSLSQDSLTAAHLVLEDDVFLSSFELQQLQMFRPERFLLPA--VKAPSANALV 578
Query: 121 WSGKQLFSMLLPSNFDYSFPPNGVSVSDGELTSSFESSGWLRDSECNIFQRLVERFQDKT 180
W+GKQL SMLLP FD+ FP V + DG+L SS E S WL D++ N+FQ LV+ +
Sbjct: 579 WTGKQLISMLLPVGFDHDFPSCNVCIRDGDLVSS-EGSFWLWDTDGNLFQSLVKHCHGQV 637
Query: 181 LNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGLQEAEQACDFNQLL 240
L+ LY AQ+VLCEWLSM G +R+NMM+EI YGLQ+A+ AC+ L+
Sbjct: 638 LDFLYAAQRVLCEWLSMRGLSVSLSDLYLCPDSNSRKNMMDEIWYGLQDADYACNLKHLM 697
Query: 241 VDHYCDFLSGSLQDSDN-----------------VASIDMDSLNYEKHISAALSEVSVDA 283
VD DFL+G+ ++ V + D + L YEK SAALS+ SVDA
Sbjct: 698 VDSCRDFLTGNNEEDQCNVERLRFLSGCSEEDYCVMAFDGERLCYEKQRSAALSQSSVDA 757
Query: 284 FRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRE 343
FR +FR+IQSLV KYAS+ N+FL MFKAGSKGNLLKLVQHSMCLGLQH+L LS+R+P +
Sbjct: 758 FRLVFRDIQSLVYKYASQDNSFLAMFKAGSKGNLLKLVQHSMCLGLQHALASLSFRIPHQ 817
Query: 344 LSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFS 403
LSCA WN +K + +S + YIPHAVVE SFL+GLNP+ECF HSV +RDSSFS
Sbjct: 818 LSCAGWNKQKA-------DDATESAKRYIPHAVVEGSFLSGLNPIECFVHSVTSRDSSFS 870
Query: 404 DNADLPGTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSY---DTDKDSSCDSGFQEGT 460
DNADLPGTL RR+MFFMRDL+ AYDGTVRN YGNQL+QFSY D D S D
Sbjct: 871 DNADLPGTLFRRMMFFMRDLHGAYDGTVRNAYGNQLVQFSYNIDDMDPSGSVDEINNSDG 930
Query: 461 VGGEPVGALSACAISEAAYSALGQPISLLETSPLLNLKNVLECGSRKKSGDQTVSLFLSD 520
+ G PVG L+ACAISEAAYSAL QPISLLE SPLLNLKNVLECG ++ S QT+SLFLS+
Sbjct: 931 IAGRPVGPLAACAISEAAYSALDQPISLLEKSPLLNLKNVLECGLKRNSAHQTMSLFLSE 990
Query: 521 KLGKQRYGFEYAALEVKNYLERVMFSDIVSTVMIMFTPQSSSLEIFNPWVCHFHLDKEIV 580
KLG+QR+GFEYAALEV+N+LER++FSDIVS V I+F+PQS F+PWVCHFH+ KEIV
Sbjct: 991 KLGRQRHGFEYAALEVQNHLERLLFSDIVSFVRIIFSPQSDGRMHFSPWVCHFHVYKEIV 1050
Query: 581 ARRKLTVHSVIESLYRRYESLTKESKVTFPNLKISSNRKCSKEGGYASLNKEKEDVDCIS 640
+R L VH +I++L ++ +S T+ FP ++I+S R C+ A KEK++ CI+
Sbjct: 1051 KKRSLKVHYIIDALEKQCKSKTR-----FPKVQITS-RYCT----VADTWKEKKETFCIT 1100
Query: 641 VTIVESSRSS-AKLEAVRDLMIPFLLGTVIKGFLEIKKVDILWSNRSKVSNSYAGSSGEL 699
VTIVE+S++ +LE ++DLMIPFLL TVIKGF+EI+KVDILW+++ K+ S+ GEL
Sbjct: 1101 VTIVETSKNEFIELETIQDLMIPFLLETVIKGFMEIQKVDILWNDKPKIPKSHNRLRGEL 1160
Query: 700 YLRVTMSSDGDSGRFWGVLINHCHRIMPMIDWTRSHPDNIHHFCSAYGIDAGRQYFLHSL 759
+LRV MS D R W L++ C IM +IDW RSHPDNIH C AYGIDAG ++FL++L
Sbjct: 1161 FLRVHMSRGSDKTRLWNQLMDDCLSIMDLIDWARSHPDNIHECCLAYGIDAGWKFFLNNL 1220
Query: 760 ASATTETGKSILPKHLHLVANSLSASGEFVGLNAKGIGRQRKHASVSSPFVQACFSNPGT 819
SA ++ GK++LP+HL LVAN LS +GEFVGLNAKG+ RQR+HASVS+PFVQACFSNPG
Sbjct: 1221 QSAMSDVGKTVLPEHLLLVANCLSVTGEFVGLNAKGLKRQREHASVSTPFVQACFSNPGD 1280
Query: 820 SFIKAAKSGVLDDLQGCLDALAWGKCMSMGTSGQFDIMHSEKVEEFPESADVYSLLIANF 879
FI+AAK+GV+DDLQG +DALAWGK ++GT GQFDI++S K EF + DVY+LL +
Sbjct: 1281 CFIRAAKAGVVDDLQGSIDALAWGKVPAIGT-GQFDIVYSGKGLEFSKPVDVYNLLGSQM 1339
Query: 880 --DQLNDKVDIPHYHNRSSNKCDSEFSRKNGGYALKEYKQS----KSFIRNFVTVNDIQK 933
+ N + + S+KC ++F K GG K +K +SF+R +T +DIQ+
Sbjct: 1340 ISTEQNTEFGVLDAQIYKSDKCGAQFLHKFGGCGPKGFKVKEGIPRSFLRRLLTYDDIQR 1399
Query: 934 LAFESRSILSRYSIDQVISDHDKITMLRVLHFHPRKNEKLGCGPADIKVGWHPVHKDSRC 993
+++ R IL++YS+DQ +++ DK ++ L+FHPR++EK+G G DIKV HP ++D+RC
Sbjct: 1400 MSYTVRKILNKYSVDQQLNESDKSVLMMTLYFHPRRDEKIGIGAKDIKVINHPEYQDTRC 1459
Query: 994 FHIIRSDESVEDFSYRKCILRALEIVDPGKFRIQKKKWL 1032
F ++R+D ++EDFSYRKC+ ALEI+ P + + +K+L
Sbjct: 1460 FSLVRTDGTIEDFSYRKCLHNALEIIAPQRAKRYCEKYL 1498
>F6HUI3_VITVI (tr|F6HUI3) DNA-directed RNA polymerase OS=Vitis vinifera
GN=VIT_02s0025g04530 PE=3 SV=1
Length = 1433
Score = 1139 bits (2945), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 592/1055 (56%), Positives = 766/1055 (72%), Gaps = 35/1055 (3%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
+I+LSV+VLP++SVVSINPLCCSP RGDFDGDCLHGYIPQSV +RVEL+ELVAL+RQLIN
Sbjct: 398 VIALSVKVLPLNSVVSINPLCCSPFRGDFDGDCLHGYIPQSVDSRVELSELVALNRQLIN 457
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCDKKLTPPPSIIKAPSRNNSL 120
QSGRNLLSLSQDSL+AA+++MEDGVLLNL+++QQL+M C +L P +IIKAP + +
Sbjct: 458 RQSGRNLLSLSQDSLSAAHLVMEDGVLLNLFQMQQLEMFCPYQLQSP-AIIKAPLLDTQV 516
Query: 121 WSGKQLFSMLLPSNFDYSFPPNGVSVSDGELTSSFESSGWLRDSECNIFQRLVERFQDKT 180
W+GKQLFSMLLP F+Y FP NGV +SDGEL SS + S WLRD + N+F LV+ Q K
Sbjct: 517 WTGKQLFSMLLPPGFNYVFPLNGVRISDGELISSSDGSAWLRDIDGNLFSSLVKDCQGKA 576
Query: 181 LNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGLQEAEQACDFNQLL 240
L+ LY AQ+VLCEWLSM G +R+NM++E+ GL AEQ C F QLL
Sbjct: 577 LDFLYAAQEVLCEWLSMRGLSVSLSDIYLSSDSISRKNMIDEVFCGLLVAEQTCHFKQLL 636
Query: 241 VDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHMFRNIQSLVDKYAS 300
VD +FL GS +++ N D+ SL YE+ SAAL + SV AF+ FR+IQ+LV +YA+
Sbjct: 637 VDSSQNFLIGSGENNQNGVVPDVQSLWYERQGSAALCQSSVCAFKQKFRDIQNLVYQYAN 696
Query: 301 KGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCAAWNSEK--GLNSM 358
K N+ L M KAGSKGNLLKLVQ +CLGLQHSLV LS+++P +LSCAAWN +K GL
Sbjct: 697 KDNSLLAMLKAGSKGNLLKLVQQGLCLGLQHSLVPLSFKIPHQLSCAAWNKQKVPGL--- 753
Query: 359 PMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNADLPGTLTRRLMF 418
+ ++T + + YIP+AVVE+SFL GLNPLECF HSV +RDSSFSDNADLPGTLTRRLMF
Sbjct: 754 -IQNDTSEYAESYIPYAVVENSFLMGLNPLECFVHSVTSRDSSFSDNADLPGTLTRRLMF 812
Query: 419 FMRDLYQAYDGTVRNLYGNQLIQFSYDTDKDSSCDSGFQEGT----VGGEPVGALSACAI 474
FMRDLY AYDGTVRN YGNQL+QFSY+ + S+ G E T +GG+PVG++SACAI
Sbjct: 813 FMRDLYIAYDGTVRNAYGNQLVQFSYNIEHTSTPSDGINEDTCAYDMGGQPVGSISACAI 872
Query: 475 SEAAYSALGQPISLLETSPLLNLKNVLECGSRKKSGDQTVSLFLSDKLGKQRYGFEYAAL 534
SEAAYSAL QPISLLE SPLLNLK VLECG RK + D+TVSLFLS KL K+++GFEY AL
Sbjct: 873 SEAAYSALDQPISLLEPSPLLNLKRVLECGLRKSTADRTVSLFLSKKLEKRKHGFEYGAL 932
Query: 535 EVKNYLERVMFSDIVSTVMIMFTPQSSSLEIFNPWVCHFHLDKEIVARRKLTVHSVIESL 594
EVKN+LE+++FSDIVSTVMI+F+PQ+ S F+PWVCHFH+ +EI +R L HS+I++L
Sbjct: 933 EVKNHLEKLLFSDIVSTVMIVFSPQNGSKTHFSPWVCHFHVCEEIAKKRSLKPHSIIDAL 992
Query: 595 YRRYESLTKESKVTFPNLKISSNRKCSKEGGYASLNKEKEDVDCISVTIVESSRSSAKLE 654
Y + S ESK+ P+L+I+S + C + + KE D CI+V+IV S +S +L+
Sbjct: 993 YMKCNSARAESKINLPDLQITS-KDC-----FVDMEKEDSDCFCITVSIVNSKKSCIQLD 1046
Query: 655 AVRDLMIPFLLGTVIKGFLEIKKVDILWSNRSKVSNSYAGSSGELYLRVTMSSDGDSGRF 714
VRDL+IPFLLG V+KG IK D+L S SSG LYLRV +S D F
Sbjct: 1047 TVRDLVIPFLLGAVVKGCC-IKNSDVLKS-----------SSGRLYLRVYVSGDCGKKNF 1094
Query: 715 WGVLINHCHRIMPMIDWTRSHPDNIHHFCSAYGIDAGRQYFLHSLASATTETGKSILPKH 774
WGVL++ C +IM MIDW RSHPDNIH YGIDAG +YFL+SL SA ++ GK++LP+H
Sbjct: 1095 WGVLMDACLQIMDMIDWERSHPDNIHDIFVVYGIDAGWKYFLNSLKSAISDIGKTVLPEH 1154
Query: 775 LHLVANSLSASGEFVGLNAKGIGRQRKHASVSSPFVQACFSNPGTSFIKAAKSGVLDDLQ 834
L LVA+ LSA+GEFVGLNAKG+ RQ++ S+SSPF+Q CFS+PG+ FIKA K V D+L
Sbjct: 1155 LLLVASCLSATGEFVGLNAKGMARQKELTSISSPFMQGCFSSPGSCFIKAGKRAVADNLH 1214
Query: 835 GCLDALAWGKCMSMGTSGQFDIMHSEKVEEFPESADVYSLLIANFD--QLNDKVDIPHYH 892
G LDALAWGK S+G+ G FDI++S K E D+Y LL + + N KV +P
Sbjct: 1215 GSLDALAWGKIPSVGSGGHFDILYSAKGHELARPEDIYKLLGSQTSCHEQNLKVKVPITC 1274
Query: 893 NRSSNKCDSEFSRKNGGYALKEYKQ----SKSFIRNFVTVNDIQKLAFESRSILSRYSID 948
+++ KC ++ NG A K K SKS +R+F+++NDIQKL+ + IL +Y I+
Sbjct: 1275 YQTTTKCGAQLVYANGDSASKGCKSLEKISKSVLRSFLSLNDIQKLSRRLKFILQKYPIN 1334
Query: 949 QVISDHDKITMLRVLHFHPRKNEKLGCGPADIKVGWHPVHKDSRCFHIIRSDESVEDFSY 1008
+S+ DK T++ L+FHPR++EK+G G +IKV +H + ++RCF ++R+D + EDFSY
Sbjct: 1335 HQLSEIDKTTLMMALYFHPRRDEKIGPGAQNIKVRYHSKYHNTRCFSLVRTDGTEEDFSY 1394
Query: 1009 RKCILRALEIVDPGKFRIQKKKWLGQDDIVELKKS 1043
KC+ ALEI+DP + R + +WL +++ L ++
Sbjct: 1395 HKCVHGALEIIDPRRARSYQSRWLPYSEVLNLYRT 1429
>K4CP21_SOLLC (tr|K4CP21) DNA-directed RNA polymerase OS=Solanum lycopersicum
GN=Solyc08g080210.2 PE=3 SV=1
Length = 1206
Score = 1022 bits (2643), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 535/1047 (51%), Positives = 719/1047 (68%), Gaps = 28/1047 (2%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
+I+LSVR+LPI+SV+SINPL CSP RGDFDGDCLHGYIPQS+ + +EL+ELVAL +QL++
Sbjct: 168 LIALSVRILPINSVLSINPLVCSPFRGDFDGDCLHGYIPQSIDSTIELSELVALKQQLLD 227
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCDKKLTPPPSIIKAPSRNNSL 120
GQ+G+NLLSLS DSLTAA++++E GV L+ +++QQLQM C ++L +I+KAP N
Sbjct: 228 GQNGQNLLSLSHDSLTAAHLILEPGVFLDRFQMQQLQMFCPRQLGMT-AIVKAPPGNICY 286
Query: 121 WSGKQLFSMLLPSNFDYSFPPNGVSVSDGELTSSFESSGWLRDSECNIFQRLVERFQDKT 180
W+GKQLFS+LLPS+ +Y FP NGV +S+GE+ +S S WLRD+ N+F LV+ T
Sbjct: 287 WTGKQLFSLLLPSDLEYVFPSNGVCISEGEIVTSSGGSSWLRDASDNLFYSLVKHNGGDT 346
Query: 181 LNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGLQEAEQACDFNQLL 240
L+LLY AQ VLCEWLSM G +RENM++E+ GLQEAE+ L+
Sbjct: 347 LDLLYAAQTVLCEWLSMRGLSVSLSDLYISADSYSRENMIDEVCSGLQEAERLSYIQLLM 406
Query: 241 VDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHMFRNIQSLVDKYAS 300
+ + DFLSG+L++S N D + ++ + SA+LS+ S AF+ +FR+IQ+LV YAS
Sbjct: 407 IKYNKDFLSGNLEESKNSMGFDFEFMSIMQQKSASLSQASASAFKKVFRDIQNLVYNYAS 466
Query: 301 KGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCAAWNSEKGLNSMPM 360
N+ L M KAGSKGNLLKLVQH+MCLGLQ SLV +S+RMPR+LSC AWN+ K S +
Sbjct: 467 NDNSLLAMLKAGSKGNLLKLVQHNMCLGLQQSLVPVSFRMPRQLSCDAWNNHK---SHLV 523
Query: 361 FSNTLKSIQC---YIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNADLPGTLTRRLM 417
K +C YIP AVV+SSFL GLNPLECF HS+ RDSSFS +AD+ GTL R+LM
Sbjct: 524 IEKPHKVPECPGSYIPSAVVKSSFLAGLNPLECFVHSLTTRDSSFSGHADVSGTLNRKLM 583
Query: 418 FFMRDLYQAYDGTVRNLYGNQLIQFSYDTDKDSSCDSGFQEG------TVGGEPVGALSA 471
FFMRDLY YDGTVRN YGNQ++QFSY + + E +GG PVG+L+A
Sbjct: 584 FFMRDLYVGYDGTVRNAYGNQIVQFSYYEAEQIASTKVTGEALESHNHAIGGHPVGSLAA 643
Query: 472 CAISEAAYSALGQPISLLETSPLLNLKNVLECGSRKKSGDQTVSLFLSDKLGKQRYGFEY 531
CAISEAAY AL QP+S LE+SPLLNLK +LE G+ ++G++T S+FLS +LG+ +GFEY
Sbjct: 644 CAISEAAYCALDQPVSALESSPLLNLKKILESGAGSRTGEKTASMFLSKRLGRWAHGFEY 703
Query: 532 AALEVKNYLERVMFSDIVSTVMIMFTPQSSSLEIFNPWVCHFHLDKEIVARRKLTVHSVI 591
ALEVK +LER++ S++VSTVMI F+P++ PWVCHFH+DKE V R+L + SV+
Sbjct: 704 GALEVKGHLERLLLSEVVSTVMICFSPETRKSTHNCPWVCHFHIDKENVKTRRLKLRSVL 763
Query: 592 ESLYRRYESLTKESKVTFPNLKISSNRKCSKEGGYASLNKEKEDVDCISVTIVESSRS-S 650
++L RY + T ++ PNL I+ K+ A + KEK ++ CI+V++VE+S+ S
Sbjct: 764 DALNMRYRAATTKAGNDLPNLHITC-----KDCSVAEVQKEKSEI-CITVSVVETSKDPS 817
Query: 651 AKLEAVRDLMIPFLLGTVIKGFLEIKKVDILWSNRSKVSNSYAGSSGELYLRVTMSSDGD 710
+ L+ +RD++IPFLL TVIKGF KKVDILW S S G +GELYL+V MS D
Sbjct: 818 SLLDTLRDVVIPFLLETVIKGFSAFKKVDILWKELPSPSKSSRGPTGELYLQVFMSESCD 877
Query: 711 SGRFWGVLINHCHRIMPMIDWTRSHPDNIHHFCSAYGIDAGRQYFLHSLASATTETGKSI 770
+FW L++ C +I +IDW RS+PD++H AYGID +YFL L SA +ETGK I
Sbjct: 878 RIKFWNALVDSCLQIRDLIDWERSYPDDVHDLTVAYGIDVAWEYFLCKLHSAVSETGKKI 937
Query: 771 LPKHLHLVANSLSASGEFVGLNAKGIGRQRKHASVSSPFVQACFSNPGTSFIKAAKSGVL 830
LP+HL L A+SL+ +GEFV L+AKG+ QRK A V SPF+QACF+NPG SF++AAK G+
Sbjct: 938 LPEHLVLAADSLTTTGEFVPLSAKGLTLQRKAAGVVSPFMQACFTNPGDSFVRAAKMGLS 997
Query: 831 DDLQGCLDALAWGKCMSMGTSGQFDIMHSEKVEEFPESADVYSLL--IANFDQLNDKVDI 888
DDLQG L++LAWGK S+GT FDIM+S K E E +VY+LL + D N KV +
Sbjct: 998 DDLQGSLESLAWGKTPSIGTGSSFDIMYSGKGYELAEQINVYTLLRNLVTVDTPNVKVTL 1057
Query: 889 PHYHNRSSNKCDSEFSRKNGGYALKEYKQSKSF--IRNFVTVNDIQKLAFESRSILSRYS 946
R + K K SF +R++ + NDI+KL+ + +LS+Y
Sbjct: 1058 GKDGGMDGMSLVRRLDRLDDLDK-KSCKSELSFTKLRSYFSFNDIKKLSQSLKQMLSKYD 1116
Query: 947 IDQVISDHDKITMLRVLHFHPRKNEKLGCG-PADIKVGWHPVHKDSRCFHIIRSDESVED 1005
I + +++ DK + L FHPR+NEK+G G P +IK+G+H + SRCF ++RSD++VED
Sbjct: 1117 IGRELNEADKCLAMMALQFHPRRNEKIGKGAPKEIKIGYHQEFEGSRCFMVVRSDDTVED 1176
Query: 1006 FSYRKCILRALEIVDPGKFRIQKKKWL 1032
FSYRKC+ ALE++ P K + +WL
Sbjct: 1177 FSYRKCMQHALELIAPQKAKTS--RWL 1201
>Q1L5X6_SOLLC (tr|Q1L5X6) DNA-directed RNA polymerase (Fragment) OS=Solanum
lycopersicum GN=RPD1 PE=2 SV=1
Length = 1138
Score = 1021 bits (2641), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 536/1047 (51%), Positives = 720/1047 (68%), Gaps = 28/1047 (2%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
+I+LSVR+LPI+SV+SINPL CSP RGDFDGDCLHGYIPQS+ + +EL+ELVAL +QL++
Sbjct: 100 LIALSVRILPINSVLSINPLVCSPFRGDFDGDCLHGYIPQSIDSTIELSELVALKQQLLD 159
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCDKKLTPPPSIIKAPSRNNSL 120
GQ+G+NLLSLS DSLTAA++++E GV L+ +++QQLQM C ++L +I+KAP N
Sbjct: 160 GQNGQNLLSLSHDSLTAAHLILEPGVFLDRFQMQQLQMFCPRQLGMT-AIVKAPPGNICY 218
Query: 121 WSGKQLFSMLLPSNFDYSFPPNGVSVSDGELTSSFESSGWLRDSECNIFQRLVERFQDKT 180
W+GKQLFS+LLPS+ +Y FP NGV +S+GE+ +S S WLRD+ N+F LV+ T
Sbjct: 219 WTGKQLFSLLLPSDLEYVFPSNGVCISEGEIVTSSGGSSWLRDASDNLFYSLVKHNGGDT 278
Query: 181 LNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGLQEAEQACDFNQLL 240
L+LLY AQ VLCEWLSM G +RENM++E+ GLQEAE+ L+
Sbjct: 279 LDLLYAAQTVLCEWLSMRGLSVSLSDLYISADSYSRENMIDEVCSGLQEAERLSYIQLLM 338
Query: 241 VDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHMFRNIQSLVDKYAS 300
+ + DFLSG+L++S N D + ++ + SA+LS+ S AF+ +FR+IQ+LV YAS
Sbjct: 339 IKYNKDFLSGNLEESKNSMGFDFEFMSIMQQKSASLSQASASAFKKVFRDIQNLVYNYAS 398
Query: 301 KGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCAAWNSEKGLNSMPM 360
N+ L M KAGSKGNLLKLVQH+MCLGLQ SLV +S+RMPR+LSC AWN+ K S +
Sbjct: 399 NDNSLLAMLKAGSKGNLLKLVQHNMCLGLQQSLVPVSFRMPRQLSCDAWNNHK---SHLV 455
Query: 361 FSNTLKSIQC---YIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNADLPGTLTRRLM 417
K +C YIP AVV+SSFL GLNPLECF HS+ RDSSFS +AD+ GTL R+LM
Sbjct: 456 IEKPHKVPECPGSYIPSAVVKSSFLAGLNPLECFVHSLTTRDSSFSGHADVSGTLNRKLM 515
Query: 418 FFMRDLYQAYDGTVRNLYGNQLIQFSYDTDKDSSCDSGFQEG------TVGGEPVGALSA 471
FFMRDLY YDGTVRN YGNQ++QFSY + + E +GG PVG+L+A
Sbjct: 516 FFMRDLYVGYDGTVRNAYGNQIVQFSYYEAEQIASTKVTGEALESHNHAIGGHPVGSLAA 575
Query: 472 CAISEAAYSALGQPISLLETSPLLNLKNVLECGSRKKSGDQTVSLFLSDKLGKQRYGFEY 531
CAISEAAY AL QP+S LE+SPLLNLK +LE G+ ++G++T S+FLS +LG+ +GFEY
Sbjct: 576 CAISEAAYCALDQPVSALESSPLLNLKKILESGAGSRTGEKTASMFLSKRLGRWAHGFEY 635
Query: 532 AALEVKNYLERVMFSDIVSTVMIMFTPQSSSLEIFNPWVCHFHLDKEIVARRKLTVHSVI 591
ALEVK +LER++ S++VSTVMI F+P++ PWVCHFH+DKE V R+L + SV+
Sbjct: 636 GALEVKGHLERLLLSEVVSTVMICFSPETRKSTHNCPWVCHFHIDKENVKTRRLKLRSVL 695
Query: 592 ESLYRRYESLTKESKVTFPNLKISSNRKCSKEGGYASLNKEKEDVDCISVTIVESSRS-S 650
++L RY + T ++ PNL I+ + CS A + KEK ++ CI+V++VE+S+ S
Sbjct: 696 DALNMRYRAATTKAGNDLPNLHITC-KDCS----VAEVQKEKSEI-CITVSVVETSKDPS 749
Query: 651 AKLEAVRDLMIPFLLGTVIKGFLEIKKVDILWSNRSKVSNSYAGSSGELYLRVTMSSDGD 710
+ L+ +RD++IPFLL TVIKGF KKVDILW S S G +GELYL+V MS D
Sbjct: 750 SLLDTLRDVVIPFLLETVIKGFSAFKKVDILWKELPSPSKSSRGPTGELYLQVFMSESCD 809
Query: 711 SGRFWGVLINHCHRIMPMIDWTRSHPDNIHHFCSAYGIDAGRQYFLHSLASATTETGKSI 770
+FW L++ C +I +IDW RS+PD++H AYGID +YFL L SA +ETGK I
Sbjct: 810 RIKFWNALVDSCLQIRDLIDWERSYPDDVHDLTVAYGIDVAWEYFLCKLHSAVSETGKKI 869
Query: 771 LPKHLHLVANSLSASGEFVGLNAKGIGRQRKHASVSSPFVQACFSNPGTSFIKAAKSGVL 830
LP+HL L A+SL+ +GEFV L+AKG+ QRK A V SPF+QACF+NPG SF++AAK G+
Sbjct: 870 LPEHLVLAADSLTTTGEFVPLSAKGLTLQRKAAGVVSPFMQACFTNPGDSFVRAAKMGLS 929
Query: 831 DDLQGCLDALAWGKCMSMGTSGQFDIMHSEKVEEFPESADVYSLL--IANFDQLNDKVDI 888
DDLQG L++LAWGK S+GT FDIM+S K E E +VY+LL + D N KV +
Sbjct: 930 DDLQGSLESLAWGKTPSIGTGSSFDIMYSGKGYELAEQINVYTLLRNLVTVDTPNVKVTL 989
Query: 889 PHYHNRSSNKCDSEFSRKNGGYALKEYKQSKSF--IRNFVTVNDIQKLAFESRSILSRYS 946
R + K K SF +R++ + NDI+KL+ + +LS+Y
Sbjct: 990 GKDGGMDGMSLVRRLDRLDDLDK-KSCKSELSFTKLRSYFSFNDIKKLSQSLKQMLSKYD 1048
Query: 947 IDQVISDHDKITMLRVLHFHPRKNEKLGCG-PADIKVGWHPVHKDSRCFHIIRSDESVED 1005
I + +++ DK + L FHPR+NEK+G G P +IK+G+H + SRCF ++RSD++VED
Sbjct: 1049 IGRELNEADKCLAMMALQFHPRRNEKIGKGAPKEIKIGYHQEFEGSRCFMVVRSDDTVED 1108
Query: 1006 FSYRKCILRALEIVDPGKFRIQKKKWL 1032
FSYRKC+ ALE++ P K + +WL
Sbjct: 1109 FSYRKCMQHALELIAPQKAKTS--RWL 1133
>D7KU36_ARALL (tr|D7KU36) DNA-directed RNA polymerase OS=Arabidopsis lyrata subsp.
lyrata GN=ARALYDRAFT_893170 PE=3 SV=1
Length = 1456
Score = 1015 bits (2624), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 531/1050 (50%), Positives = 711/1050 (67%), Gaps = 49/1050 (4%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
+I+++VRVLP +SVVS+NP+CC P RGDFDGDCLHGY+PQS+ A+VEL+ELVALD+QLIN
Sbjct: 420 LIAMTVRVLPTTSVVSLNPICCLPFRGDFDGDCLHGYVPQSIQAKVELDELVALDKQLIN 479
Query: 61 GQSGRNLLSLSQDSLTAAYML-MEDGVLLNLYEIQQLQMLCDKKLTPPPSIIKA-PSRNN 118
Q+GRNLLSL QDSLTAAY++ +E LN ++QQLQM C +L PPP+IIKA PS
Sbjct: 480 RQNGRNLLSLGQDSLTAAYLVNVEKNCYLNRAQMQQLQMYCPFQL-PPPAIIKASPSSTE 538
Query: 119 SLWSGKQLFSMLLPSNFDYSFPPNGVSVSDGELTSSFESSGWLRDSECNIFQRLVERFQD 178
W+G QLF ML P FDY++P N V VS+GEL S E S WLRD E N Q L++ +
Sbjct: 539 PQWTGMQLFGMLFPPGFDYTYPLNDVVVSNGELLSFSEGSAWLRDGEGNFIQGLIKHDKR 598
Query: 179 KTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGLQEAEQACDFNQ 238
K L+++Y AQ++L +WL M G +R+N+ EEISYGL+EAEQ C+ Q
Sbjct: 599 KVLDIIYSAQEMLSQWLLMRGLSVSLADLYLSSDPQSRKNLTEEISYGLREAEQVCNKQQ 658
Query: 239 LLVDHYCDFLS--GSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHMFRNIQSLVD 296
L+V+ + DFL+ G + D+VA D+ YE+ SA LS+++V AF+ +R++Q+L
Sbjct: 659 LMVESWRDFLAVNGEDEGEDSVAR-DLARFCYERQKSATLSKIAVSAFKDAYRDVQALAY 717
Query: 297 KYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCAAWN------ 350
+Y + N+FL M KAGSKGN+ KLVQHSMC+GLQ+S V LSY PREL+CA+WN
Sbjct: 718 RYGEQSNSFLIMSKAGSKGNIGKLVQHSMCIGLQNSAVSLSYGFPRELTCASWNDPNSPL 777
Query: 351 -SEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNADLP 409
KG +S + + Y+P+ V+E+SFLTGLNPLE F HSV +RDSSFS NADLP
Sbjct: 778 RGAKGEDST--------ATESYVPYGVIENSFLTGLNPLESFVHSVTSRDSSFSGNADLP 829
Query: 410 GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTDKDSSCDSGFQEGTVGGEPVGAL 469
GTL+RRLMFFMRD+Y AYDGTVRN +GNQL+QF+Y+TD G E + GE +G+L
Sbjct: 830 GTLSRRLMFFMRDIYAAYDGTVRNSFGNQLVQFTYETD-------GPVED-ITGEALGSL 881
Query: 470 SACAISEAAYSALGQPISLLETSPLLNLKNVLECGSRKKSGDQTVSLFLSDKLGKQRYGF 529
SACA+SEAAYSAL QPISLLETSPLLNLKNVLECGS+K +QT++L+LS+ L K+++GF
Sbjct: 882 SACALSEAAYSALDQPISLLETSPLLNLKNVLECGSKKGQREQTMTLYLSETLSKKKHGF 941
Query: 530 EYAALEVKNYLERVMFSDIVSTVMIMFTPQSSSLEIFNPWVCHFHLDKEIVARRKLTVHS 589
EY +LE+KN+LE++ FS+IVST MI+F+P +++ +PWVCHFH+ ++++ R++L V S
Sbjct: 942 EYGSLEIKNHLEKLSFSEIVSTSMIIFSPSTNTKVPLSPWVCHFHISEKVLKRKQLNVES 1001
Query: 590 VIESLYRRYESLTKESKVTFPNLKISSNRKCSKEGGYASLNKEKEDVDCISVTIVESSRS 649
V+ SL +Y+S +E K+ +L I S CS + K+D CI+VT++E+S+
Sbjct: 1002 VVSSLNEQYKSRNRELKLDIVDLDIQSTNHCSSDD-----KAMKDDSFCITVTVIEASKH 1056
Query: 650 SA-KLEAVRDLMIPFLLGTVIKGFLEIKKVDILWSNRSKVSNSYAGS-SGELYLRVTMSS 707
S +L+A+R ++IPFLL + +KG EIKKVDILW++R K +GELYLRVTM
Sbjct: 1057 SVLELDAIRLVLIPFLLDSPVKGSQEIKKVDILWTDRPKAPKRNGDHLAGELYLRVTMYG 1116
Query: 708 DGDSGRFWGVLINHCHRIMPMIDWTRSHPDNIHHFCSAYGIDAGRQYFLHSLASATTETG 767
D W L+ C IM MIDW+RSHPDNI CS YGIDAGR F+ +L SA ++TG
Sbjct: 1117 DRGKRNCWTALLETCLPIMDMIDWSRSHPDNIRQCCSVYGIDAGRSIFVANLESAVSDTG 1176
Query: 768 KSILPKHLHLVANSLSASGEFVGLNAKGIGRQRKHASVSSPFVQACFSNPGTSFIKAAKS 827
K+IL +HL LVA+SLS +GEFV LNAKG +QR+ S +PF QACFS+P F+KAAK
Sbjct: 1177 KTILKEHLLLVADSLSVTGEFVALNAKGWSKQRQVESTPAPFTQACFSSPSQCFLKAAKE 1236
Query: 828 GVLDDLQGCLDALAWGKCMSMGTSGQFDIMHSEKVEEFPESADVYSLLIANFDQLN---- 883
GV DDLQG +DALAWGK GT QF+I+ S KV F +VY LL + + N
Sbjct: 1237 GVRDDLQGSIDALAWGKVPGFGTGDQFEIIISPKVHGFTTPVNVYDLLSSTPPKTNSAPK 1296
Query: 884 -DKVDIPHYHNRSSNKCDSEFSRKNGGYALKEYKQSKSFIRNFVTVNDIQKLAFESRSIL 942
DKV + + + + F + G L S S +R T +I+KL+ + IL
Sbjct: 1297 SDKVTVQPF-----DLLGTAFLK--GIKVLDGKGISMSRLRTIFTWENIEKLSQSLKRIL 1349
Query: 943 SRYSIDQVISDHDKITMLRVLHFHPRKNEKLGCGPADIKVGWHPVHKDSRCFHIIRSDES 1002
+ Y I+ ++ D+ ++ VLH HP +K+G G I+V H DSRCF ++R D +
Sbjct: 1350 TSYEINDPLNGRDEELVMMVLHLHPNSADKIGPGLKGIRVA-KSKHGDSRCFEVVRIDGT 1408
Query: 1003 VEDFSYRKCILRALEIVDPGKFRIQKKKWL 1032
EDFSY KC+L A +I+ P K + K K+L
Sbjct: 1409 FEDFSYHKCVLGATKIIAPKKVNLYKSKYL 1438
>R0HUP7_9BRAS (tr|R0HUP7) Uncharacterized protein OS=Capsella rubella
GN=CARUB_v10019657mg PE=4 SV=1
Length = 1459
Score = 1007 bits (2603), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 519/1050 (49%), Positives = 698/1050 (66%), Gaps = 44/1050 (4%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
+I++SV++LP +SVVS+NP+CC+P RGDFDGDCLHGYIPQSV A+VEL+ELVALD+Q IN
Sbjct: 426 LIAMSVKLLPTTSVVSLNPICCNPFRGDFDGDCLHGYIPQSVQAKVELDELVALDKQHIN 485
Query: 61 GQSGRNLLSLSQDSLTAAYML-MEDGVLLNLYEIQQLQMLCDKKLTPPPSIIKA-PSRNN 118
Q+GRNLLSL QDSLT AY++ +E LN +IQQLQM C +L PPP+II+A PS
Sbjct: 486 RQNGRNLLSLGQDSLTGAYLVNVEKNCYLNRAQIQQLQMYCPFQL-PPPAIIQASPSSTE 544
Query: 119 SLWSGKQLFSMLLPSNFDYSFPPNGVSVSDGELTSSFESSGWLRDSECNIFQRLVERFQD 178
W+G QLF ML P FDY+ P N V VS+GEL +S E S WLRD E N QRL++ Q
Sbjct: 545 PQWTGMQLFGMLFPPGFDYTHPLNDVVVSNGELLASSEGSAWLRDGEGNFIQRLLKHDQG 604
Query: 179 KTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGLQEAEQACDFNQ 238
K L +++ AQ++L +WL M G +REN+ EEI+YGL EAEQ C+ Q
Sbjct: 605 KVLEIIHSAQEMLSQWLLMRGLSVSLADLYLSSDPQSRENLTEEIAYGLLEAEQVCNKQQ 664
Query: 239 LLVDHYCDFLS--GSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHMFRNIQSLVD 296
L+V+ + DFL+ G +D + + D+ YE+ SA LS ++V AF+ +R+IQ+L
Sbjct: 665 LMVESWRDFLAVNGEEKDEEEDSFSDLARFCYERQKSATLSRIAVSAFKDAYRDIQALAY 724
Query: 297 KYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCAAWNSEKG-L 355
+Y + N+FL M KAGSKGN+ KLVQHSMC+GLQ+S V LS+ PR+L+CAAWN L
Sbjct: 725 RYGDQSNSFLIMSKAGSKGNIGKLVQHSMCIGLQNSAVALSFGFPRKLTCAAWNDPNSPL 784
Query: 356 NSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNADLPGTLTRR 415
S T + + Y+P+ V+E+SFLTGLNPLE F HSV +RDSSFS NADLPGTL+RR
Sbjct: 785 RSAKGADKT--ATESYVPYGVIENSFLTGLNPLESFVHSVTSRDSSFSGNADLPGTLSRR 842
Query: 416 LMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTDKDSSCDSGFQEGTVGGEPVGALSACAIS 475
LMFFMRD+Y AYDGTVRN +GNQ++QF+Y+TD + GE +G+LSACA+S
Sbjct: 843 LMFFMRDIYAAYDGTVRNSFGNQVVQFTYETDGPVE--------EITGEALGSLSACALS 894
Query: 476 EAAYSALGQPISLLETSPLLNLKNVLECGSRKKSGDQTVSLFLSDKLGKQRYGFEYAALE 535
EAAYSAL QP+SLLETSPLLNLKN+LECGS+K +QT+SL+LS+ L K+++GFEY +LE
Sbjct: 895 EAAYSALDQPVSLLETSPLLNLKNILECGSKKGQREQTISLYLSETLSKKKHGFEYGSLE 954
Query: 536 VKNYLERVMFSDIVSTVMIMFTPQSSSLEIFNPWVCHFHLDKEIVARRKLTVHSVIESLY 595
+KNYLE++ FS+IVST MI+F+P+++S +PWVCHFH+ ++++ R++L SV+ SL
Sbjct: 955 IKNYLEKLSFSEIVSTSMIIFSPRTNSKAPLSPWVCHFHISEKVLKRKQLNAESVVSSLN 1014
Query: 596 RRYESLTKESKVTFPNLKISSNRKCSKEGGYASLNKEKEDVDCISVTIVESSRSSAKLEA 655
Y S +E K+ +L I C + + +D CI+VT++E+S+ L+A
Sbjct: 1015 EHYSSRNRELKLDLVDLDIQCTNHCPSDDKAMT-----DDSFCITVTVIEASKP-LDLDA 1068
Query: 656 VRDLMIPFLLGTVIKGFLEIKKVDILWSNRSKVSNSYAGS-SGELYLRVTMSSDGDSGRF 714
VR ++IPFLL + +KG+ EIKKVDILW++R K Y +GELYLRVTM+ D
Sbjct: 1069 VRLILIPFLLDSPVKGYQEIKKVDILWTDRPKAPKMYGNHLAGELYLRVTMNGDRGKRNC 1128
Query: 715 WGVLINHCHRIMPMIDWTRSHPDNIHHFCSAYGIDAGRQYFLHSLASATTETGKSILPKH 774
W L+ C IM MIDW+RSHPDNI CS YGIDAGR F+ +L SA ++TGK+IL +H
Sbjct: 1129 WSSLVETCLPIMDMIDWSRSHPDNIRQCCSVYGIDAGRSIFVANLESAVSDTGKTILREH 1188
Query: 775 LHLVANSLSASGEFVGLNAKGIGRQRKHASVSSPFVQACFSNPGTSFIKAAKSGVLDDLQ 834
L L A+SLS +GEFV LNAKG +QR+ S +PF QACFS+P F+KAAK GV+D LQ
Sbjct: 1189 LLLAADSLSITGEFVALNAKGWSKQRQVESTPAPFTQACFSSPSQCFLKAAKEGVVDQLQ 1248
Query: 835 GCLDALAWGKCMSMGTSGQFDIMHSEKVEEFPESADVYSLLIANFDQLNDKVDIPHYHNR 894
G +D LAWGK GT QFDI+ S KV F DVY LL + R
Sbjct: 1249 GSIDTLAWGKVPGFGTGDQFDIIISPKVHGFTTPVDVYELL--------SSIPPKTVTKR 1300
Query: 895 SSNKCDSEFSRKNGGYALKEYKQSKSF------------IRNFVTVNDIQKLAFESRSIL 942
+++ K + + + K+F +R T D++ L+ + IL
Sbjct: 1301 ATSSAPKSDKFKVQPFDMLDTAFPKAFKALNGKGISLFQLRTMFTWEDVENLSRSLKHIL 1360
Query: 943 SRYSIDQVISDHDKITMLRVLHFHPRKNEKLGCGPADIKVGWHPVHKDSRCFHIIRSDES 1002
+ Y ++ +S+ D+ + VL FHP + EK+G G I+VG + H DSRCF ++R D++
Sbjct: 1361 NNYEVNAPLSESDENFVSMVLCFHPNRAEKIGPGFQGIRVG-NSKHGDSRCFEVVRIDDT 1419
Query: 1003 VEDFSYRKCILRALEIVDPGKFRIQKKKWL 1032
EDFSY KC+L A +I+ PG+ K K+L
Sbjct: 1420 TEDFSYHKCVLGATKIIAPGRMNFYKSKYL 1449
>M5WEG2_PRUPE (tr|M5WEG2) Uncharacterized protein OS=Prunus persica
GN=PRUPE_ppa000278mg PE=4 SV=1
Length = 1356
Score = 1001 bits (2587), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 541/1046 (51%), Positives = 696/1046 (66%), Gaps = 104/1046 (9%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
+I+LSV++LPI+SVVSINPLCCSP RGDFDGDCLHGYIPQS ARVEL ELVALD+QLIN
Sbjct: 396 LIALSVKILPITSVVSINPLCCSPFRGDFDGDCLHGYIPQSNDARVELRELVALDKQLIN 455
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCDKKLTPPPSIIKAPSRNNSL 120
GQSGRNLLSLSQDSLTAA+++MEDG LLNL E+QQL+M C L P P++IKAPS NS
Sbjct: 456 GQSGRNLLSLSQDSLTAAHLIMEDGTLLNLLEMQQLEMFCWDVL-PSPAVIKAPSL-NSH 513
Query: 121 WSGKQLFSMLLPSNFDYSFPPNGVSVSDGELTSSFESSGWLRDSECNIFQRLVERFQDKT 180
W SM G+SVS +L + +S S N+ + ++ Q+
Sbjct: 514 W-----LSM------------RGLSVSLADLYLASDSG-----SRNNLMEEILCGLQEAE 551
Query: 181 LNLLYDAQKV-LCEWLSMTGFXXXXXXXXXXXXXCAREN---MMEEISYGLQEAEQACDF 236
++ V C+ M CA EN + + Y E +++
Sbjct: 552 QACIFKQLLVDNCQDFLM---------------GCAEENRSPLTFDAEYFCHEKQKSAAL 596
Query: 237 NQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHMFRNIQSLVD 296
+Q++ D + KHI FR+IQSL
Sbjct: 597 SQVVHDAF-------------------------KHI---------------FRDIQSLAH 616
Query: 297 KYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCAAWNSEKGLN 356
KYA K N+ LTM KAGSKGNL KLVQHSMCLGLQHSL+ LS+R+P +LSCAAWN++K +
Sbjct: 617 KYAGKDNSLLTMLKAGSKGNLQKLVQHSMCLGLQHSLIPLSFRIPNQLSCAAWNNQKACS 676
Query: 357 SMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNADLPGTLTRRL 416
+ T + ++ YIP AVV+SSFLTGLNPLECF HSV +RDSSFS NADLPGTLTR+L
Sbjct: 677 LIQKVEGTYECVESYIPSAVVKSSFLTGLNPLECFVHSVTSRDSSFSGNADLPGTLTRKL 736
Query: 417 MFFMRDLYQAYDGTVRNLYGNQLIQFSYDTDKDSSCDSGFQEGT-------VGGEPVGAL 469
MF MRDLY AYDGTVRN YGNQL+QFSYD D D S + +GG+PVG+L
Sbjct: 737 MFLMRDLYTAYDGTVRNAYGNQLVQFSYDIDMDKSDSTSTSHAKSTTACDGIGGQPVGSL 796
Query: 470 SACAISEAAYSALGQPISLLETSPLLNLKNVLECGSRKKSGDQTVSLFLSDKLGKQRYGF 529
SACA+SEAAYSAL QP+SLLETSPLLNLKN+LECGS+K S QT+SLFLS KLG++R+GF
Sbjct: 797 SACALSEAAYSALDQPVSLLETSPLLNLKNILECGSKKSSAKQTLSLFLSKKLGRRRHGF 856
Query: 530 EYAALEVKNYLERVMFSDIVSTVMIMFTPQSSSLEIFNPWVCHFHLDKEIVARRKLTVHS 589
EY ALEVKN+L + FSDIVSTVMI+F+ QS+S + F+PWV HFH+ KEIV +R+L VHS
Sbjct: 857 EYGALEVKNHLVGLTFSDIVSTVMIIFSSQSNSQKRFSPWVTHFHICKEIVRKRRLKVHS 916
Query: 590 VIESLYRRYESLTKESKVTFPNLKISSNRKCSKEGGYASLNKEKEDVDCISVTIVESSR- 648
V++SLY R S E K+ +L I+S + CS A +D CI+VT+ E+S+
Sbjct: 917 VVDSLYARCNSARPELKIVLRSLLITS-KGCSA----AQTCNGDDDTFCITVTMPENSKN 971
Query: 649 SSAKLEAVRDLMIPFLLGTVIKGFLEIKKVDILWSNRSKVSNSYAGSSGELYLRVTMSSD 708
SS +L+ RDL+IPFLLGTV+KGFLE+KKVDILW++ + S GSSGELYLRV+MS
Sbjct: 972 SSEQLDIARDLVIPFLLGTVVKGFLEVKKVDILWNDHPRESKKIHGSSGELYLRVSMSGK 1031
Query: 709 GDSGRFWGVLINHCHRIMPMIDWTRSHPDNIHHFCSAYGIDAGRQYFLHSLASATTETGK 768
R W +L+++C +IM +IDW+RSHPDN+H +C AYGIDAG +YFL++L +A + GK
Sbjct: 1032 TGRRRLWSMLMDNCLQIMDLIDWSRSHPDNVHDYCIAYGIDAGWKYFLNNLETAANDIGK 1091
Query: 769 SILPKHLHLVANSLSASGEFVGLNAKGIGRQRKHASVSSPFVQACFSNPGTSFIKAAKSG 828
ILP+HL LVA+ LSA+GEFVGLNAKGI +Q+ H SVSSPFVQACFS+PG FIKAAK G
Sbjct: 1092 DILPQHLILVADCLSATGEFVGLNAKGIAQQKGHTSVSSPFVQACFSSPGACFIKAAKGG 1151
Query: 829 VLDDLQGCLDALAWGKCMSMGTSGQFDIMHSEKVEEFPESADVYSLLIANFDQLNDKV-D 887
V+D+L G ++ALAWG GT QFDI++S++ + + Y LL + + +
Sbjct: 1152 VVDELHGSVEALAWGNTPPSGTGRQFDILYSKEGLNLSKPLNPYDLLGSQISSSRENAFE 1211
Query: 888 IPHYHNRSSNKCDSEFSRKNGGYALKEYKQS-KSFIRNFVTVNDIQKLAFESRSILSRYS 946
N + +KCD L++ + KS IR ++T+NDIQK + IL +Y
Sbjct: 1212 TSKAWNNTLDKCDVT------SIGLEKSESVFKSVIRKYLTINDIQKWTQTLKRILRKYD 1265
Query: 947 IDQVISDHDKITMLRVLHFHPRKNEKLGCGPADIKVGWHPVHKDSRCFHIIRSDESVEDF 1006
I++ +++ DK + LHFHP K +K+G G DIKVG HP H+++RCF ++R D + EDF
Sbjct: 1266 INESLTEGDKSILKMALHFHPHKVDKMGSGVQDIKVGQHPKHENARCFMLVRIDRTEEDF 1325
Query: 1007 SYRKCILRALEIVDPGKFRIQKKKWL 1032
SY KC+L ALEIV P + + + KW+
Sbjct: 1326 SYHKCVLGALEIVAPERAKSYRSKWM 1351
>B9RC12_RICCO (tr|B9RC12) DNA-directed RNA polymerase OS=Ricinus communis
GN=RCOM_1683300 PE=3 SV=1
Length = 1475
Score = 985 bits (2547), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 510/866 (58%), Positives = 647/866 (74%), Gaps = 27/866 (3%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
+I+LSV+VLP +SV++INPL C+P RGDFDGDCLHGY+PQSV RVEL ELVALD+QLIN
Sbjct: 428 LIALSVKVLPATSVLAINPLICAPFRGDFDGDCLHGYVPQSVDTRVELRELVALDKQLIN 487
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCDKKLTPPPSIIKAPSRNNSL 120
Q+GRNLLS SQDSL AA+++MEDGVLL+L ++QQLQM C +L P ++ KAPS N
Sbjct: 488 VQNGRNLLSFSQDSLVAAHLVMEDGVLLSLQQMQQLQMFCPHQLFSP-AVRKAPSLNGCA 546
Query: 121 WSGKQLFSMLLPSNFDYSFPPNGVSVSDGELTSSFESSGWLRDSECNIFQRLVERFQDKT 180
W+GKQL SMLLP FD+ P + V + DGEL SS E S WLRD++ N+FQ L+++ QD+
Sbjct: 547 WTGKQLISMLLPRGFDHECPSSDVYIRDGELISS-EGSFWLRDTDGNLFQSLIKQCQDQV 605
Query: 181 LNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGLQEAEQACDFNQLL 240
L+ LY AQ+VLCEWLSM G +RENMM+E+ +GLQ+A+ C+ Q +
Sbjct: 606 LDFLYIAQEVLCEWLSMRGLSVSLSDLYLCPDSDSRENMMDEVLFGLQDAKGTCNMKQFM 665
Query: 241 VDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHMFRNIQSLVDKYAS 300
VD DFL+ +D + D++ L +EK SAALS+ SVDAF+H+FR+IQ+L KYAS
Sbjct: 666 VDSCRDFLASIDEDEQYSVNFDVEHLCHEKQRSAALSQASVDAFKHVFRDIQTLGYKYAS 725
Query: 301 KGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCAAWNSEKGLNSMPM 360
K NA + MFK+GSKGNLLK+VQHSMCLGLQHSLV LS+RMP +LSC AWN +K
Sbjct: 726 KDNALMAMFKSGSKGNLLKVVQHSMCLGLQHSLVPLSFRMPLQLSCDAWNKQKA------ 779
Query: 361 FSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNADLPGTLTRRLMFFM 420
N ++ + YIP AVVE FLTGLNPLECF HSV +R+SSFSDNADLPGTLTRRLMFFM
Sbjct: 780 -ENAVECARSYIPSAVVEGCFLTGLNPLECFVHSVTSRESSFSDNADLPGTLTRRLMFFM 838
Query: 421 RDLYQAYDGTVRNLYGNQLIQFSYDTDKDSSCDSGFQEGTV------GGEPVGALSACAI 474
RD++ AYDG+VR+ YGNQLIQFSY+ D+ S ++ V G+PVG+L+AC+I
Sbjct: 839 RDVHAAYDGSVRSAYGNQLIQFSYNIDEGRSAETYGTAKIVDNYDGMAGKPVGSLAACSI 898
Query: 475 SEAAYSALGQPISLLETSPLLNLKNVLECGSRKKSGDQTVSLFLSDKLGKQRYGFEYAAL 534
SEAAYSAL QPISLLE SPLLNLKNVLECG +K + +++SLFLS+KLG++R+GFEY AL
Sbjct: 899 SEAAYSALDQPISLLEKSPLLNLKNVLECGLKKSNAHKSMSLFLSEKLGRRRHGFEYGAL 958
Query: 535 EVKNYLERVMFSDIVSTVMIMFTPQSSSLEIFNPWVCHFHLDKEIVARRKLTVHSVIESL 594
+V+++LER++FSDIVS I+F+ QS S F+PWVCHFH+ KEI+ +R L V S+I L
Sbjct: 959 KVQDHLERLLFSDIVSVSRIIFSSQSESKTCFSPWVCHFHVYKEIMKKRNLNVDSIINIL 1018
Query: 595 YRRYESLTKESKVTFPNLKISSNRKCSKEGGYASLNKEKEDVDCISVTIVESSR-SSAKL 653
R +S T PN++IS + CS A ++EKE+ CI+VTIVE S+ SS +L
Sbjct: 1019 NGRCKSNT-----NLPNVQISC-KSCS----IADNHREKEETLCITVTIVERSKNSSTRL 1068
Query: 654 EAVRDLMIPFLLGTVIKGFLEIKKVDILWSNRSKVSNSYAGSSGELYLRVTMSSDGDSGR 713
++DLMIPFLL TV+KG +EI KVDILW + ++S ++ GELYLRV+MS+D + R
Sbjct: 1069 ATIQDLMIPFLLETVLKGLMEINKVDILWKDWPRISKTHNQPYGELYLRVSMSADSEKTR 1128
Query: 714 FWGVLINHCHRIMPMIDWTRSHPDNIHHFCSAYGIDAGRQYFLHSLASATTETGKSILPK 773
W +L+++C IM MIDWT S PDN+ F AYGIDAG ++FL L SA ++ GKS+LP+
Sbjct: 1129 LWNLLMDYCLPIMDMIDWTCSRPDNVRDFSLAYGIDAGWKFFLQRLESAISDVGKSVLPE 1188
Query: 774 HLHLVANSLSASGEFVGLNAKGIGRQRKHASVSSPFVQACFSNPGTSFIKAAKSGVLDDL 833
H+ LVAN LS +GEFVGLNAKG RQR+ ASVSSPFVQACFS+PG FIKAAK+GV DDL
Sbjct: 1189 HMLLVANCLSVTGEFVGLNAKGWKRQREDASVSSPFVQACFSSPGNCFIKAAKAGVKDDL 1248
Query: 834 QGCLDALAWGKCMSMGTSGQFDIMHS 859
QG LDALAWGK S+GT GQFDI++S
Sbjct: 1249 QGSLDALAWGKVPSVGT-GQFDIVYS 1273
Score = 105 bits (262), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/88 (54%), Positives = 65/88 (73%)
Query: 940 SILSRYSIDQVISDHDKITMLRVLHFHPRKNEKLGCGPADIKVGWHPVHKDSRCFHIIRS 999
++L YS+DQ +++ DK T+ L+FHPRK EK+G G DIKV HP ++DSRCF ++RS
Sbjct: 1308 NLLVWYSVDQQLNEADKCTLTMALYFHPRKEEKIGSGFKDIKVVKHPEYQDSRCFSLVRS 1367
Query: 1000 DESVEDFSYRKCILRALEIVDPGKFRIQ 1027
D ++EDFSYRKC+ ALEI+ P K R Q
Sbjct: 1368 DGTIEDFSYRKCVYGALEIIAPHKARSQ 1395
>M4EFP9_BRARP (tr|M4EFP9) DNA-directed RNA polymerase OS=Brassica rapa subsp.
pekinensis GN=Bra027611 PE=3 SV=1
Length = 1443
Score = 966 bits (2497), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 508/1057 (48%), Positives = 700/1057 (66%), Gaps = 58/1057 (5%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
+I++SV+VLP +SVVS+NP+CC P RGDFDGDCLHGY+PQS+ A+ EL ELVALD+QL+N
Sbjct: 410 LIAMSVKVLPTTSVVSLNPICCLPFRGDFDGDCLHGYVPQSIQAKAELEELVALDKQLVN 469
Query: 61 GQSGRNLLSLSQDSLTAAYML-MEDGVLLNLYEIQQLQMLCDKKLTPPPSIIKAPSRNNS 119
Q+GRNLLSL QDSLTAAY++ +E LN E+QQLQM C +L P P+II+ S ++
Sbjct: 470 RQNGRNLLSLGQDSLTAAYLVNVETNCFLNRAEMQQLQMYCPFEL-PRPAIIRGSSTSSE 528
Query: 120 -LWSGKQLFSMLLPSNFDYSFPPNGVSVSDGELTSSFESSGWLRDSECNIFQRLVERFQD 178
W+GKQLF ML P F+Y++P N V V++GEL SS + SGWLRD E N Q L++ ++
Sbjct: 529 PQWTGKQLFGMLFPPGFEYAYPLNNVVVTNGELLSSSDGSGWLRDGEGNFIQGLMKHDKE 588
Query: 179 KTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGLQEAEQACDFNQ 238
K L++++ AQ++L +WL G +R N+ EEISYGLQEAEQ C+ Q
Sbjct: 589 KVLDIIFSAQEMLSQWLLNRGLSVSLSDLYFASDKHSRRNLTEEISYGLQEAEQVCNKQQ 648
Query: 239 LLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHMFRNIQSLVDKY 298
L+V+ DFL+ + ++ D V + D++ YE+ SA LS+++V AF+ +R++Q+L +Y
Sbjct: 649 LMVESRRDFLAVNGEE-DTVVADDLELFCYERQRSATLSKLAVSAFKDAYRDVQALAYRY 707
Query: 299 ASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCAAWNSEKGLNSM 358
+ NAFL M KAGSKGN+ KL QHSMC+GLQ+S V LS+ PR+L+CA+WN
Sbjct: 708 GDQSNAFLVMSKAGSKGNMGKLAQHSMCIGLQNSSVALSFGFPRKLTCASWNDPNS---- 763
Query: 359 PMFS---NTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNADLPGTLTRR 415
P+ + + ++P VVESSFLTGLNPLE F HSV +RDSSFS NADLPGTL+R+
Sbjct: 764 PLRGARGEDRTAHESFVPFGVVESSFLTGLNPLESFVHSVTSRDSSFSGNADLPGTLSRK 823
Query: 416 LMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTDKDSSCDSGFQEGTVGGEPVGALSACAIS 475
LMFFMRD+Y AYDGTVRN +GN L+QF Y++ D+ D + GE VG+LSACAI+
Sbjct: 824 LMFFMRDIYAAYDGTVRNSFGNHLVQFRYESSDDAEED-------MTGEAVGSLSACAIT 876
Query: 476 EAAYSALGQPISLLETSPLLNLKNVLECGSRKKSGDQTVSLFLSDKLGKQRYGFEYAALE 535
EAAYSAL QPISLLETSPLLNLKNVLECGS+K +QT+SL+LS+ L K+++GFEY AL+
Sbjct: 877 EAAYSALDQPISLLETSPLLNLKNVLECGSKKGLKEQTMSLYLSETLSKKKHGFEYGALD 936
Query: 536 VKNYLERVMFSDIVSTVMIMFTPQSSSLEIFNPWVCHFHLDKEIVARRKLTVHSVIESLY 595
+K +LE++ FS+IVST F+P++++ + WVCHFH+ K+++ + +L + SV+ SL
Sbjct: 937 IKRHLEKLCFSEIVST----FSPRTNTRMPMSSWVCHFHISKKVLKQNQLDLESVVSSLN 992
Query: 596 RRYESLTKESKVTFPNLKISSNRKCSKEGGYASLNKEKEDVDCISVTIVESSR-SSAKLE 654
++Y + KE K+ +L I S CS + ++D CI+VT++E+SR S +L+
Sbjct: 993 KQYANRKKELKLDVIDLDIQSKNHCSWDD-----KAMEDDRVCITVTVLEASRHDSLELD 1047
Query: 655 AVRDLMIPFLLGTVIKGFLEIKKVDILWSNRSKVSN-SYAGSSGELYLRVTMSSDGDSGR 713
A+R ++IPFLL + +KG+ EIKKVDILW +R K + G +GEL+L+VTM
Sbjct: 1048 AIRLVLIPFLLDSPVKGYREIKKVDILWVDRPKAPQRNKKGLAGELFLKVTMHGVRGKRS 1107
Query: 714 FWGVLINHCHRIMPMIDWTRSHPDNIHHFCSAYGIDAGRQYFLHSLASATTETGKSILPK 773
FW L+ C IM MIDWTRSHPDNI CS YGIDAGR FL L SA ++TGK++L +
Sbjct: 1108 FWSALLETCLPIMDMIDWTRSHPDNIRQCCSVYGIDAGRSIFLADLESAVSDTGKAMLRE 1167
Query: 774 HLHLVANSLSASGEFVGLNAKGIGRQRKHASVSSPFVQACFSNPGTSFIKAAKSGVLDDL 833
HL LVA+SLS +GEFV LN KG RQR+ S +PF QACFS+P F+KAAK GV D+L
Sbjct: 1168 HLLLVADSLSVTGEFVALNPKGWSRQRQAESTPAPFAQACFSSPSQCFLKAAKEGVTDEL 1227
Query: 834 QGCLDALAWGKCMSMGTSGQFDIMHSEKVEEFPES-ADVYSLLIANFDQLNDKVDIPHYH 892
+G +DALAWGK S GT QF+I+ S K F DVY L+ +P
Sbjct: 1228 EGSIDALAWGKVPSFGTGDQFEIIISPKNHGFSTPVVDVYGF-------LSRTATLP--- 1277
Query: 893 NRSSNKCDSEFSRKNGGYALKEYKQ-----------------SKSFIRNFVTVNDIQKLA 935
R + + S K+ + ++ + ++S +R T ND++KL+
Sbjct: 1278 KRKAVRATSSSLPKSDEFTVQPFPVLDTALSKAVKTLDGKGLTRSQLRMIFTWNDMEKLS 1337
Query: 936 FESRSILSRYSIDQVISDHDKITMLRVLHFHPRKNEKLGCGPADIKVGWHPVHKDSRCFH 995
+ IL Y ID +++ D ++ L FHP ++EK+G G IKV + H ++RCF
Sbjct: 1338 RSLKRILYNYEIDATLNELDGRLLMMALLFHPNRDEKIGPGFKGIKVA-NSKHGNARCFE 1396
Query: 996 IIRSDESVEDFSYRKCILRALEIVDPGKFRIQKKKWL 1032
++R+D + EDFSY KC+L A EI+ P + K K+L
Sbjct: 1397 VVRTDGTTEDFSYHKCVLGATEIIAPKRVNFYKAKYL 1433
>Q1L5X5_ANTMA (tr|Q1L5X5) DNA-directed RNA polymerase (Fragment) OS=Antirrhinum
majus GN=RPD1 PE=2 SV=1
Length = 1112
Score = 928 bits (2398), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 496/1032 (48%), Positives = 685/1032 (66%), Gaps = 34/1032 (3%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
+I+LSV++LPI+SVVSINPL CSPLRGDFDGDCLHGY+PQSV RVEL ELV L++QL+N
Sbjct: 100 LIALSVKILPINSVVSINPLTCSPLRGDFDGDCLHGYVPQSVNTRVELKELVTLNKQLVN 159
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCDKKLTPPPSIIKAPSRNNSL 120
GQSG+NLLSLSQDSLTAA+++ +DGV LN E+QQLQM + P+II++ SR S
Sbjct: 160 GQSGQNLLSLSQDSLTAAHLISQDGVFLNKPEMQQLQMF-SAWIPMLPAIIQSTSRETSF 218
Query: 121 WSGKQLFSMLLPSNFDYSFPPNGVSVSDGELTSSFESSGWLRDSECNIFQRLVERFQDKT 180
W+GKQLFS LLP +F++S NGV + GEL S + S WLRDS N+FQ L+ +KT
Sbjct: 219 WTGKQLFSQLLPLDFEFSNASNGVGIKHGELVSFSDGSSWLRDSGENLFQCLLRHCPEKT 278
Query: 181 LNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGLQEAEQACDFNQLL 240
L++L+ AQ+VLCEWLS G +R+N++++I+ GL+EAE+ D + L+
Sbjct: 279 LDILHAAQEVLCEWLSRRGLSVSLSDLCLSSDPQSRKNLLDDIACGLEEAEKMSDISLLM 338
Query: 241 VDHYCDFL-SGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHMFRNIQSLVDKYA 299
V H FL S +D D + S + L + SA L + S+ A + +FR++Q+L+ YA
Sbjct: 339 VGHNQRFLIENSEEDEDMLKS--KEHLYVAQQTSAELCQASLFASKSVFRDMQNLIYHYA 396
Query: 300 SKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCAAWNSEKGLNSMP 359
N+ L M KAGSKGNL KL QHSMCLGLQHSL +S+ MP LSCA+WN++K S+
Sbjct: 397 GDTNSLLAMLKAGSKGNLQKLFQHSMCLGLQHSLTPVSFSMPHYLSCASWNNQKNHLSLY 456
Query: 360 MFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNADLPGTLTRRLMFF 419
T + + YIP VV SS+L GLNPLE F HS+ RDSSFS AD+ GTLTR+LMFF
Sbjct: 457 RLDGTREILDSYIPCTVVSSSYLMGLNPLESFLHSLTTRDSSFSGQADVSGTLTRKLMFF 516
Query: 420 MRDLYQAYDGTVRNLYGNQLIQFSYDTDKDSSCDSGFQEGTVGGEPVGALSACAISEAAY 479
MRD+ YDGTVRN YG+Q++QF Y T S+ +S + +GG PVG+L+ACAISEAAY
Sbjct: 517 MRDIITGYDGTVRNSYGSQIVQFDYGTGDMSAVNS---DVLMGGHPVGSLAACAISEAAY 573
Query: 480 SALGQPISLLETSPLLNLKNVLECGSRKKSGDQTVSLFLSDKLGKQRYGFEYAALEVKNY 539
SAL QP+S LE SPL+ LK VL+CG + +G ++ SLFLS +LGK GFE+ ALEVK++
Sbjct: 574 SALDQPVSALEPSPLIALKKVLDCGVKNNTGGKSASLFLSRRLGKWVNGFEFGALEVKDH 633
Query: 540 LERVMFSDIVSTVMIMFTPQSSSLEIFNPWVCHFHLDKEIVARRKLTVHSVIESLYRRYE 599
+E ++FS++VS V I F+ + + +PWVC+F ++KE+ +R L + SV+ +L
Sbjct: 634 MESLLFSEVVSEVTISFSTERRT--NISPWVCNFCINKEVFMKRNLKLESVVHTLRANCN 691
Query: 600 SLTKESKVTFPNLKISSNRKCSKEGGYASLNKEKEDVDCISVTIVESSRSSAK------- 652
+ K+ K+ PNL I N+ CS+ A +++ + CISV + ++ S+
Sbjct: 692 ATPKKMKLKLPNLLIE-NKDCSE----ADFHEDSSRI-CISVAVSQNELSNLHFGSLKEY 745
Query: 653 --LEAVRDLMIPFLLGTVIKGFLEIKKVDILWSNRSKVSNSYAGSSGELYLRVTMSSDGD 710
L+ +R+++IP LL TV+KGF E KKVDILW + S SSGE Y+RV MS + +
Sbjct: 746 EILDYLRNMVIPVLLRTVVKGFPEFKKVDILWKDEQSRSRFSKCSSGEPYVRVFMSENCE 805
Query: 711 SGRFWGVLINHCHRIMPMIDWTRSHPDNIHHFCSAYGIDAGRQYFLHSLASATTETGKSI 770
RFW +L+ RI +IDW RSHPD++H + A+GID F++SL SA +ETGK+I
Sbjct: 806 RARFWNILVEKSLRIRSLIDWDRSHPDDVHDYGEAFGIDTAWMCFVNSLNSAISETGKTI 865
Query: 771 LPKHLHLVANSLSASGEFVGLNAKGIGRQRKHASVSSPFVQACFSNPGTSFIKAAKSGVL 830
LP+HL AN LS +GEFV LNAKG+ +QRK A+++SPFVQACFSNP FIKAAK G +
Sbjct: 866 LPEHLIATANCLSMTGEFVSLNAKGLAQQRKEATINSPFVQACFSNPSDCFIKAAKMGQM 925
Query: 831 DDLQGCLDALAWGKCMSMGTSGQFDIMHSEKVEEFPESADVYSLLIAN--FDQLNDKVDI 888
D+LQG +D+LAWG+ +GT GQFDI++S K E + DVYSLL + F + ++K+ +
Sbjct: 926 DNLQGSVDSLAWGQTPPIGTGGQFDIIYSGKGHEPSKPTDVYSLLNSQVGFAKPSEKIKL 985
Query: 889 PHYHNRSSNKCDSEFSRKNGGYALKEYKQSKSFIRNFVTVNDIQKLAFESRSILSRYSID 948
P +++ S+ + NG K + +R+ ++I++++ + +L Y+ D
Sbjct: 986 PVQFTSGNDQ--SQNLKTNGR---KRFLAGMKSLRS--AEDEIREVSLALKRMLHEYASD 1038
Query: 949 QVISDHDKITMLRVLHFHPRKNEKLGCGPADIKVGWHPVHKDSRCFHIIRSDESVEDFSY 1008
+ DK LR L +HPR EK G G +IKVG HP HK+SRCF ++++D + ED SY
Sbjct: 1039 CQLRGEDKTLALRALQYHPRWEEKTGAGTVEIKVGRHPDHKESRCFFVVKTDGTEEDISY 1098
Query: 1009 RKCILRALEIVD 1020
RK I + L VD
Sbjct: 1099 RKSI-QGLARVD 1109
>M0TPQ4_MUSAM (tr|M0TPQ4) DNA-directed RNA polymerase OS=Musa acuminata subsp.
malaccensis PE=3 SV=1
Length = 1674
Score = 799 bits (2063), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 443/1087 (40%), Positives = 636/1087 (58%), Gaps = 81/1087 (7%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
+I+LSV +LPI SV+SINPLCC+PL GDFDGDCLHGY+PQS+ RVEL EL++LD QL N
Sbjct: 290 LIALSVMILPIQSVISINPLCCAPLLGDFDGDCLHGYVPQSIGCRVELQELLSLDHQLFN 349
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCDKKLTPPPSIIKAPSRNNSL 120
Q GR+L+SL+ DSLTAAY+L + LN ++QQL MLC + PPP+++K P L
Sbjct: 350 AQDGRSLVSLTHDSLTAAYLLTANREFLNKVDMQQLAMLCPFPM-PPPAVVKTPKFQIPL 408
Query: 121 WSGKQLFSMLLPSNFDYSFPPNGVSVSDGELTSSFESSGWLRDSECNIFQRLVERFQDKT 180
W+G+QLFSMLLP D+ + +S GE+ +S S WL+++ +F + + + K
Sbjct: 409 WTGEQLFSMLLPPTMDFGVNSRNM-ISKGEVMASLGGSFWLQNTTTGLFTTMFKHYGRKA 467
Query: 181 LNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGLQEAEQACDFNQLL 240
L+ L +Q++LCE+L++ G +R MM+EI +GL+EAE AC QL+
Sbjct: 468 LDYLCCSQELLCEYLTLRGLSVSLGDVYLSSDSYSRLKMMDEIYFGLEEAEDACQVMQLM 527
Query: 241 VDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHMFRNIQSLVDKYAS 300
++ + L +D D + I + E+ +S+VS+ AF++++ ++ S + ++ +
Sbjct: 528 LEPEMEILRNQNKDEDTLDCISQYKIASER---TCVSQVSIAAFKNVYHDLLSQIYQFIN 584
Query: 301 KGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCAAWNSEKGLNSMPM 360
K N+ L M AGSKG+L+KL+Q CLGLQ L + +P +L+C WN+ K L+
Sbjct: 585 KDNSMLEMIDAGSKGSLVKLIQQGACLGLQLFAHPLPFTVPSKLNCCMWNNLKALDGG-- 642
Query: 361 FSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNADLPGTLTRRLMFFM 420
S+ KS +AV+ +SFL GLNPLECF H++ R + F++NA+LPGTLTR+LMF+M
Sbjct: 643 ISDAAKSSCGQSSYAVIGTSFLDGLNPLECFVHAICGRANLFTENAELPGTLTRKLMFYM 702
Query: 421 RDLYQAYDGTVRNLYGNQLIQFSYDTDKDS-----SC---DSGFQEGT-VGGEPVGALSA 471
RDLY AYDGTVR+ YG Q+++FSY +DS SC D E T +GGEPVG+ +A
Sbjct: 703 RDLYLAYDGTVRSAYGQQIVEFSYSILEDSTEGGESCVAYDGKDAEYTGLGGEPVGSWAA 762
Query: 472 CAISEAAYSALGQPISLLETSPLLNLKNVLECGSRKKSGDQTVSLFLSDKLGKQRYGFEY 531
C+ISEAAY +L P++ LE SPL+ LK VL+C S + T LFLS +L RYG EY
Sbjct: 763 CSISEAAYGSLEFPMNSLEYSPLMKLKMVLDCCKSNASTNHTALLFLSKRLHGWRYGCEY 822
Query: 532 AALEVKNYLERVMFSDIVSTVMIMFTPQSSSLEIFNPWVCHFHLDKEIVARRKLTVHSVI 591
ALEVKN+LERV F +++ TVMI++ F+PW+ HFH+ K+ + RR+L V V
Sbjct: 823 GALEVKNHLERVCFFNLIITVMILYDGHDVQGTNFSPWIMHFHVSKDKMLRRRLNVQLVK 882
Query: 592 ESLYRRYESLTKESKVTFPNLKISSNRKCSKEGGYASLNKEKEDVDCISVTIVESSRSSA 651
L + Y + + P L S + CS + KE +D C+SV E+S S
Sbjct: 883 NELIKHYNCMRERMNPMLPRLCFVS-KNCSSAYKW----KEHDDSFCMSVA-AETSESLI 936
Query: 652 KLEAVRDLMIPFLLGTVIKGFLEIKKVDILWSNRSKVSNSYAGSSGELYLRVTMSSDGDS 711
+L+ +RD++IP LL T IKGF +KV+IL S GS EL+LRVTMS
Sbjct: 937 QLDTIRDMVIPLLLETPIKGFWASEKVEIL-------CESLPGSGSELFLRVTMSKKCLP 989
Query: 712 GRFWGVLINHCHRIMPMIDWTRSHPDNIHHFCSAYGIDAGRQYFLHSLASATTETGKSIL 771
G FW L + C IM +IDW SHPDN+++ YGIDA +YF+ SL S T + G+ I
Sbjct: 990 GSFWSDLQDACIPIMDLIDWQCSHPDNVYNISGTYGIDAAWKYFVKSLKSVTADIGRDIH 1049
Query: 772 PKHLHLVANSLSASGEFVGLNAKGIGRQRKHASVSSPFVQACFSNPGTSFIKAAKSGVLD 831
+HL + A+ LS +GEF GL+ KG+ +QR S+SSPF QAC SNP F+ AAK G +D
Sbjct: 1050 KRHLFMAADCLSVTGEFHGLSTKGLRQQRNDMSISSPFAQACLSNPVNCFVNAAKQGSMD 1109
Query: 832 DLQGCLDALAWGKCMSMGTSGQFDIMHSEKVEEFPESADVYSLL---------------- 875
L G LDA+AWGK GT G F+I++S KV +Y L
Sbjct: 1110 HLSGTLDAVAWGKEAPSGTGGPFEIVYSGKVHNLTRGEGIYKNLHSIKAELQQGDGEVCM 1169
Query: 876 ----------------IANFDQLNDKVDIPHYHNRS--SNKCDSEFSRKNGGYALKEYKQ 917
NFD + +D P + + S+F GY ++
Sbjct: 1170 AANQTVPAKWKQQPKYSTNFDGAKETID-PQTSDEDHLKERIVSKFRTNCKGYNKQQQIS 1228
Query: 918 SKSFI-RNFVTV--------------NDIQKLAFESRSILSRYSIDQVISDHDKITMLRV 962
+ F+ ++ +T D+ + R+IL +Y ID + + D +++
Sbjct: 1229 ANDFLAKSHLTFGLRSKFSSESVSSWTDVVDMCSSLRTILYKYPIDGFLDEKDNSSLIEA 1288
Query: 963 LHFHPRKNEKLGCGPADIKVGWHPVHKDSRCFHIIRSDESVEDFSYRKCILRALEIVDP- 1021
L++HP++ K+G G IKVG P+H SRCF ++RSD S+EDFSYRKC++ A +++ P
Sbjct: 1289 LNYHPKRAAKIGSGIQKIKVGCSPLHPGSRCFVLLRSDGSLEDFSYRKCVVGAAKLISPE 1348
Query: 1022 -GKFRIQ 1027
G R++
Sbjct: 1349 FGSIRVR 1355
>J3M0K5_ORYBR (tr|J3M0K5) DNA-directed RNA polymerase OS=Oryza brachyantha
GN=OB04G29300 PE=3 SV=1
Length = 1474
Score = 756 bits (1952), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/1044 (39%), Positives = 621/1044 (59%), Gaps = 64/1044 (6%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
+++LS ++LP+ S VSINPLCC P +GDFDGDCLHGY+PQS+ +RVEL ELV L+RQL+N
Sbjct: 452 LVALSAKLLPVHSAVSINPLCCDPFKGDFDGDCLHGYVPQSIQSRVELEELVGLNRQLLN 511
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCDK-KLTPPPSIIKAPSRNNS 119
Q GR+L+SL+ DSL AA+ L +LL E QQLQMLC TP PS+IK+ +
Sbjct: 512 AQDGRSLVSLTHDSLAAAHQLTSADILLQKAEFQQLQMLCSSISSTPMPSVIKSANSQGP 571
Query: 120 LWSGKQLFSMLLPSNFDYSFPPNGVSVSDGELTSSFESSGWLRDSECNIFQRLVERFQDK 179
LW+GKQLF +LLPS + SF N + + D E+ + S WL+++ ++F + + + K
Sbjct: 572 LWTGKQLFGLLLPSGMNISFDQN-LHIKDSEVLTCSSGSLWLQNNTSSLFSVMFKEYGRK 630
Query: 180 TLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGLQEAEQACDFNQL 239
L L Q VLCE+L++ G +R + EE+ L EAE+A Q+
Sbjct: 631 ALQFLSSTQDVLCEFLTIRGLSVSLSDLYLFSDHYSRRKLSEEVHLALDEAEEAFQIKQI 690
Query: 240 LVD--------HY--CDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHMFR 289
L++ +Y D LS S SD + S ++ + S+ +F+ +F
Sbjct: 691 LLNPVSIPNLKYYDGADDLSNSYGQSDFTQA------------SPSIIKSSITSFKSIFN 738
Query: 290 NIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCAAW 349
++ +V + SK N+ + M +GSKG++ K VQ + C+GLQ + +++P LSC +W
Sbjct: 739 DLLKMVQHHVSKDNSMMAMINSGSKGSIPKFVQQTACVGLQLPASKFPFKIPSILSCVSW 798
Query: 350 NSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNADLP 409
N K L+ + T++S+ +AV+ +SFL GLNPLEC H+++ R + FS+NAD+P
Sbjct: 799 NRHKSLD-YEITDYTIESMGGQSMYAVIRNSFLDGLNPLECLLHAISGRANFFSENADVP 857
Query: 410 GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTDKDSSCDSGFQEGTVGGEP---V 466
GTLTR+LM+ +RD Y AYDGTVR+ YG Q++QFSYDT D + E + GEP V
Sbjct: 858 GTLTRKLMYHLRDTYIAYDGTVRSSYGQQIVQFSYDTS-----DGMYIEHDIEGEPGTPV 912
Query: 467 GALSACAISEAAYSALGQPISLLETSPLLNLKNVLECGSRKKSGDQTVSLFLSDKLGKQR 526
G+ +AC+ISEAAY AL P++ LE SPL+NL+ VL+C S D T LFLS L K R
Sbjct: 913 GSWAACSISEAAYGALDHPVNGLEDSPLMNLQEVLKCHKGTNSVDHTGLLFLSKHLRKYR 972
Query: 527 YGFEYAALEVKNYLERVMFSDIVSTVMIMFTPQSSSLEIFNPWVCHFHLDKEIVARRKLT 586
YGFEYA+LEVK++LERV FSD+V TVMI++ NPWV HFHL++E + ++L
Sbjct: 973 YGFEYASLEVKDHLERVDFSDLVDTVMILYGGSDIQKSKGNPWVTHFHLNQEAMKIKRLG 1032
Query: 587 VHSVIESLYRRYESLTKESKVTFPNLKISSNRKCSKEGGYASLNKEKEDVDCISVTIVES 646
+ V+ L +Y +L K+ T P++ I S+ KCS G K C+++ +
Sbjct: 1033 LGYVVRELIDQYNALRKQLNNTIPSVCILSS-KCSVGNGCV-----KNQACCVTMVVQVE 1086
Query: 647 SRSSAKLEAVRDLMIPFLLGTVIKGFLEIKKVDILWSNRSKVSNSYAGSSGELYLRVTMS 706
S S+++L +++ +IP +L T++KGFLE K V + S EL +RV MS
Sbjct: 1087 SNSTSQLTIIKERVIPSILATLLKGFLEFKNVKVQCQQDS-----------ELVVRVDMS 1135
Query: 707 SDGDSGRFWGVLINHCHRIMPMIDWTRSHPDNIHHFCSAYGIDAGRQYFLHSLASATTET 766
SG+FW L N C IM +IDW RS P+ ++ +YGID+ ++F+ SL S T
Sbjct: 1136 EHCKSGKFWATLQNACIPIMELIDWERSRPERLYDVFCSYGIDSAWKFFVESLRSTTDAI 1195
Query: 767 GKSILPKHLHLVANSLSASGEFVGLNAKGIGRQRKHASVSSPFVQACFSNPGTSFIKAAK 826
G++I +HL +VA+ LS SG+F GL+++G+ +QR S+SSPF +ACFS P SFI AAK
Sbjct: 1196 GRNIRRQHLLVVADCLSVSGQFHGLSSQGLKQQRTSLSISSPFSEACFSRPAHSFINAAK 1255
Query: 827 SGVLDDLQGCLDALAWGKCMSMGTSGQFDIMHSEKVEEFPESADVYSLL----IANFDQL 882
+D L G LDA+AWGK GTSG F I++S K E + ++Y+ L I F++
Sbjct: 1256 KDSVDKLSGTLDAIAWGKEPCTGTSGPFKILYSGKSHETKQKENIYNFLHNPEIQAFEK- 1314
Query: 883 NDKVDIPHYHNRSSNKCDSEFSRK-----NGGYALKEYKQSKSFIRNFVTVNDIQKLAFE 937
+ +D ++K S + + NGG K + + + + D++
Sbjct: 1315 -NLMDTHRKRTEKTSKWRSALNSEGITTINGGSISVNQKFLGAKVGIWENIIDMRTCL-- 1371
Query: 938 SRSILSRYSIDQVISDHDKITMLRVLHFHPRKNEKLGCGPADIKVGWHPVHKDSRCFHII 997
+++L Y+++ ++++ DK ++ L FHPR +K+G G +IK+G +P H +SRCF ++
Sbjct: 1372 -QNMLREYTLNDIVTEQDKSCLIEALKFHPRGFDKIGAGIREIKIGVNPGHPNSRCFIVL 1430
Query: 998 RSDESVEDFSYRKCILRALEIVDP 1021
R+D++ DFSY KC+L A V P
Sbjct: 1431 RNDDTTADFSYNKCVLGAANSVSP 1454
>J3MZZ4_ORYBR (tr|J3MZZ4) DNA-directed RNA polymerase OS=Oryza brachyantha
GN=OB09G25730 PE=3 SV=1
Length = 1779
Score = 753 bits (1944), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/1055 (40%), Positives = 621/1055 (58%), Gaps = 58/1055 (5%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
+I+LS ++L S VSINPLCC P +GDFDGDCLHGY+PQS+ +RVEL+ELV L QL+N
Sbjct: 757 LIALSAKILSSHSAVSINPLCCGPFQGDFDGDCLHGYVPQSLQSRVELDELVGLSGQLLN 816
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCDK-KLTPPPSIIKAPSRNNS 119
Q GR+L+SL+ DSLTAA+ L V L E QQLQMLC TP PSI+K+
Sbjct: 817 AQDGRSLVSLTHDSLTAAHQLTSSDVFLQKAEFQQLQMLCSSVSSTPMPSILKSSKSQGP 876
Query: 120 LWSGKQLFSMLLPSNFDYSFPPNGVSVSDGELTSSFESSGWLRDSECNIFQRLVERFQDK 179
LW+GKQLF ML+PS + +F + + D E+ + S WL+++ ++F + E + K
Sbjct: 877 LWTGKQLFGMLIPSGMNINFD-EKLHIKDSEVLAFSSGSFWLQNNTSSLFSVMFEEYGCK 935
Query: 180 TLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGLQEAEQACDFNQL 239
L L +Q VLCE+L+M G +R ++EE+ L EAE+A Q+
Sbjct: 936 ALEFLSSSQDVLCEFLTMRGLSVSLSDFYLLSDHYSRRKLIEEVHLALDEAEEAFQIKQI 995
Query: 240 LVDH----YCDFLSGSLQDSDNVASIDMDSLN-YEK----HISAALSEVSVDAFRHMFRN 290
L++ Y + G+ D LN YE+ +S + + S+ +F+ +F +
Sbjct: 996 LLNPVSIPYLKYYDGA-----------DDLLNSYEQSDYTQVSLPIIQSSITSFKSVFND 1044
Query: 291 IQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCAAWN 350
+ +V ++ASK N+ + M +GSKG++LK VQ + C+GLQ +R+P ELSC +WN
Sbjct: 1045 LLKMVHQHASKDNSMMAMINSGSKGSVLKFVQQTACVGLQLPASIFPFRIPSELSCVSWN 1104
Query: 351 SEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNADLPG 410
K LN M T + + +AV+ +SFL GLNPLEC H+++ R + FS+NAD+PG
Sbjct: 1105 RHKSLNC-EMTDGTSERMGGQNIYAVIRNSFLDGLNPLECLLHAISGRANFFSENADVPG 1163
Query: 411 TLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTDKDSSCDSGFQEGTVGGEP---VG 467
TLTR+LM+ +RD Y AYDGTVR+ YG Q++QFSY+T D F++ + GEP VG
Sbjct: 1164 TLTRKLMYHLRDTYVAYDGTVRSSYGQQIVQFSYNT-----ADGMFRDHDLEGEPGAPVG 1218
Query: 468 ALSACAISEAAYSALGQPISLLETSPLLNLKNVLECGSRKKSGDQTVSLFLSDKLGKQRY 527
+ +AC+ISEAAY AL P++ LE SPL+NL+ VL+C KS D T LFLS L K RY
Sbjct: 1219 SWAACSISEAAYGALDHPVNALEDSPLMNLQEVLKCRKSTKSVDHTGLLFLSKHLRKYRY 1278
Query: 528 GFEYAALEVKNYLERVMFSDIVSTVMIMFTPQSSSLEIFNPWVCHFHLDKEIVARRKLTV 587
GFEYA+L+VK++LERV FSD+V VMI++ NPW+ HFHL +E + ++L +
Sbjct: 1279 GFEYASLQVKDHLERVDFSDLVDAVMILYGGSDMQKTQGNPWITHFHLSQETMKIKRLRL 1338
Query: 588 HSVIESLYRRYESLTKESKVTFPNLKISSNRKCSKEGGYASLNKEKEDVDCISVTIVESS 647
++ L +Y +L K+S T P++ IS N CS K CI++ S
Sbjct: 1339 GFIVRELIEQYNALRKQSNNTIPSVCIS-NSNCSVGNECV-----KNCTCCITMVAQVES 1392
Query: 648 RSSAKLEAVRDLMIPFLLGTVIKGFLEIKKVDILWSNRSKVSNSYAGSSGELYLRVTMSS 707
S+++L +++ +IP +L T++KGFLE K V + + S EL ++V MS
Sbjct: 1393 NSTSQLNIIKERVIPSILETLLKGFLEFKNVKVEYQQDS-----------ELVVKVGMSE 1441
Query: 708 DGDSGRFWGVLINHCHRIMPMIDWTRSHPDNIHHFCSAYGIDAGRQYFLHSLASATTETG 767
SG+FW L N C IM +IDW RS P+ ++ +YGID+ ++F+ SL S T G
Sbjct: 1442 HCKSGKFWAALQNACIPIMELIDWERSQPERVNDIFCSYGIDSAWKFFVESLRSTTDAIG 1501
Query: 768 KSILPKHLHLVANSLSASGEFVGLNAKGIGRQRKHASVSSPFVQACFSNPGTSFIKAAKS 827
++I +HL +VA+ LS SG+F GL ++G+ QR S+SSPF +ACFS P SFI AAK
Sbjct: 1502 RNIRRQHLLVVADCLSVSGQFHGLTSQGLKHQRTSLSISSPFSEACFSRPAHSFINAAKQ 1561
Query: 828 GVLDDLQGCLDALAWGKCMSMGTSGQFDIMHSEKVEEFPESADVYSLLIANFDQLNDKVD 887
+D+L G LDA+AWGK +GTSG F I++S K E ++ ++Y L Q +K
Sbjct: 1562 DSVDNLSGTLDAIAWGKEPCVGTSGPFKILYSGKSLETKQNENIYDFLHNPDVQAIEKSF 1621
Query: 888 IPHYHNRS--SNKCDSEF-SRKNGGYALKEYKQSKSFIRNFVTV-NDIQKLAFESRSILS 943
+ Y R+ ++K S F S NG + F+ V + +I + +++L
Sbjct: 1622 MDTYRQRTEKTSKQRSSFKSEDNGTITGGAISVIQEFLDAKVGIWENIIDMRTCLQNMLR 1681
Query: 944 RYSIDQVISDHDKITMLRVLHFHPRKNEKLGCGPADIKVGWHPVHKDSRCFHIIRSDESV 1003
Y++++V+++ DK + L FHPR +K+G G +IK+G +P H + RCF ++R+D++
Sbjct: 1682 EYTLNEVVTEQDKSCLKEALKFHPRGYDKIGVGIREIKIGVNPGHPNLRCFIVLRNDDTT 1741
Query: 1004 EDFSYRKCILRALEIVDP------GKFRIQKKKWL 1032
DFSY KC+L A + P K K WL
Sbjct: 1742 ADFSYNKCVLGAANSLKPELGSHMEKILFNKAIWL 1776
>C0JR68_MAIZE (tr|C0JR68) DNA-directed RNA polymerase OS=Zea mays PE=2 SV=1
Length = 1444
Score = 747 bits (1929), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/1032 (39%), Positives = 619/1032 (59%), Gaps = 50/1032 (4%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
+I+LS ++LPI SVVSINPLCC+P GDFDGDCLHGYIPQS+ +RVEL ELV+L QL+N
Sbjct: 439 LIALSAKILPIHSVVSINPLCCTPFAGDFDGDCLHGYIPQSIRSRVELEELVSLHNQLLN 498
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCDKKLTPPPSIIKAPSRNNSL 120
Q GRNL+SL+ DSL AA++L V L E+QQLQMLC TP P++IK+ + SL
Sbjct: 499 MQDGRNLVSLTHDSLAAAHLLTSTDVFLKKSELQQLQMLCLSVSTPAPAVIKSMNFQGSL 558
Query: 121 WSGKQLFSMLLPSNFDYSFPPNGVSVSDGELTSSFESSGWLRDSECNIFQRLVERFQDKT 180
W+GKQLFSMLLPS ++S + + D E+ + S WL+++ +F + +++ K
Sbjct: 559 WTGKQLFSMLLPSGMNFSCDTE-LHIMDSEVLTCSLGSSWLQNNTSGLFSVMFKQYGCKA 617
Query: 181 LNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGLQEAEQACDFNQLL 240
L+ L AQ+VLCE+L+M G +R + E + L EAE+A ++L
Sbjct: 618 LDFLSSAQEVLCEFLTMRGLSVSLSDLYMFSDHYSRRKLAEGVKLALYEAEEAFRVKKIL 677
Query: 241 VDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHMFRNIQSLVDKYAS 300
+D + ++++V D + + + S+ AF+ +FR++ +V ++ S
Sbjct: 678 LDPINIPVLKCHDETEDVTYRQSDCIQSNPSVIRS----SIMAFKDVFRDLLKMVQQHVS 733
Query: 301 KGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCAAWNSEKGLNSMPM 360
N+ + M AGSKG++LK Q + C+GLQ + +R+P +LSC +WN +K LN
Sbjct: 734 NDNSMMVMINAGSKGSMLKYAQQTACIGLQLPASKFPFRIPSQLSCISWNGQKSLNYEA- 792
Query: 361 FSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNADLPGTLTRRLMFFM 420
+T + + +AV+++SF+ GLNPLEC H+++ R + FS+NAD+PGTLTR+LM+ +
Sbjct: 793 -ESTSERVGGQNLYAVIKNSFIEGLNPLECLLHAISGRANFFSENADVPGTLTRKLMYHL 851
Query: 421 RDLYQAYDGTVRNLYGNQLIQFSYDTDKDSSCDSGFQEGTVGGEPVGALSACAISEAAYS 480
RD++ AYDGTVR+ YG Q++QFSYD+ D D G PVG +AC+ISEAAY
Sbjct: 852 RDIHVAYDGTVRSSYGQQIVQFSYDS-VDDLVDK-------LGAPVGCRAACSISEAAYG 903
Query: 481 ALGQPISLLETSPLLNLKNVLECGSRKKSGDQTVSLFLSDKLGKQRYGFEYAALEVKNYL 540
AL P++ LE SPL+NL+ V +C SGD LFLS L K RYG EYA+LEVKN+L
Sbjct: 904 ALEHPVNGLEDSPLMNLQEVFKCHKATNSGDHIGLLFLSRHLKKYRYGLEYASLEVKNHL 963
Query: 541 ERVMFSDIVSTVMIMFTPQSSSLEIFNP--WVCHFHLDKEIVARRKLTVHSVIESLYRRY 598
ERV FSD+V T+MI++ +I N W HFH++K ++ +++L + V++ L + Y
Sbjct: 964 ERVNFSDLVETIMIIYDGHD---KIRNEGMWTTHFHINKAMMKKKRLGLRFVVDELAKEY 1020
Query: 599 ESLTKESKVTFPNLKISSNRKC--SKEGGYASLNKEKEDVDCISVTIVESSRSSAKLEAV 656
++ + P+++I S RKC EG K CI+V S ++L+ +
Sbjct: 1021 DTTRDQLNNAIPSIRI-SRRKCLVGDEG-------VKSSSCCIAVVAHAERNSISQLDTI 1072
Query: 657 RDLMIPFLLGTVIKGFLEIKKVDILWSNRSKVSNSYAGSSGELYLRVTMSSDGDSGRFWG 716
+ +IP +L T++KGFLE K V+I + GEL ++V MS GRFW
Sbjct: 1073 KTRVIPSILDTLLKGFLEFKDVEIQCPH-----------DGELLVKVCMSEHCKGGRFWP 1121
Query: 717 VLINHCHRIMPMIDWTRSHPDNIHHFCSAYGIDAGRQYFLHSLASATTETGKSILPKHLH 776
L N C +M +IDW S P N+ +YGID+ +YF+ SL SATT+TG++I +HL
Sbjct: 1122 TLQNACIPVMELIDWELSQPSNVSDIFCSYGIDSAWKYFVESLKSATTDTGRNIRREHLL 1181
Query: 777 LVANSLSASGEFVGLNAKGIGRQRKHASVSSPFVQACFSNPGTSFIKAAKSGVLDDLQGC 836
++A+SLS +G+F L+++G+ +QR S+SSPF +ACFS P SFI AAK +D+L G
Sbjct: 1182 VIADSLSVTGQFHALSSQGLKQQRTRLSISSPFSEACFSRPAQSFINAAKQCSVDNLCGS 1241
Query: 837 LDALAWGKCMSMGTSGQFDIMHSEKVEEFPESADVYSLL----IANFDQLNDKVDIPHYH 892
LDA+AWGK GTSG F+IMHS K E ++ +Y L + NF++ + +D
Sbjct: 1242 LDAVAWGKEPFNGTSGPFEIMHSGKPHEPEQNESIYDFLCSSKVRNFEK--NHLDTRRQS 1299
Query: 893 NRSSNKCDSEFSRKNGGYALKEYKQS--KSFIRNFVTV-NDIQKLAFESRSILSRYSIDQ 949
+++ C G + + + F+ V++ ++I + +++L Y ++
Sbjct: 1300 TENASICRLACKSSKGSTTVNGVAITIDQDFLHAKVSIWDNIIDMRTSLQNMLREYPLNG 1359
Query: 950 VISDHDKITMLRVLHFHPRKNEKLGCGPADIKVGWHPVHKDSRCFHIIRSDESVEDFSYR 1009
+++ DK ++ L FH R EK+G G +IK+G +P H +RCF ++R+D++ EDFSY
Sbjct: 1360 YVAEPDKSQLIEALKFHSRGAEKIGVGVREIKIGLNPSHPGTRCFILLRNDDTTEDFSYH 1419
Query: 1010 KCILRALEIVDP 1021
KC+ A + + P
Sbjct: 1420 KCVQGAADSISP 1431
>C0JR65_MAIZE (tr|C0JR65) DNA-directed RNA polymerase OS=Zea mays PE=2 SV=1
Length = 1444
Score = 747 bits (1928), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/1032 (39%), Positives = 619/1032 (59%), Gaps = 50/1032 (4%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
+I+LS ++LPI SVVSINPLCC+P GDFDGDCLHGYIPQS+ +RVEL ELV+L QL+N
Sbjct: 439 LIALSAKILPIHSVVSINPLCCTPFAGDFDGDCLHGYIPQSIRSRVELEELVSLHNQLLN 498
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCDKKLTPPPSIIKAPSRNNSL 120
Q GRNL+SL+ DSL AA++L V L E+QQLQMLC TP P++IK+ + SL
Sbjct: 499 MQDGRNLVSLTHDSLAAAHLLTSTDVFLKKSELQQLQMLCLSVSTPAPAVIKSMNFQGSL 558
Query: 121 WSGKQLFSMLLPSNFDYSFPPNGVSVSDGELTSSFESSGWLRDSECNIFQRLVERFQDKT 180
W+GKQLFSMLLPS ++S + + D E+ + S WL+++ +F + +++ K
Sbjct: 559 WTGKQLFSMLLPSGMNFSCDTE-LHIMDSEVLTCSLGSSWLQNNTSGLFSVMFKQYGCKA 617
Query: 181 LNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGLQEAEQACDFNQLL 240
L+ L AQ+VLCE+L+M G +R + E + L EAE+A ++L
Sbjct: 618 LDFLSSAQEVLCEFLTMRGLSVSLSDLYMFSDHYSRRKLAEGVKLALYEAEEAFRVKKIL 677
Query: 241 VDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHMFRNIQSLVDKYAS 300
+D + ++++V D + + + S+ AF+ +FR++ +V ++ S
Sbjct: 678 LDPINIPVLKCHDETEDVTYRQSDCIQSNPSVIRS----SIMAFKDVFRDLLKMVQQHVS 733
Query: 301 KGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCAAWNSEKGLNSMPM 360
N+ + M AGSKG++LK Q + C+GLQ + +R+P +LSC +WN +K LN
Sbjct: 734 NDNSMMVMINAGSKGSMLKYAQQTACIGLQLPASKFPFRIPSQLSCISWNGQKSLNYEA- 792
Query: 361 FSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNADLPGTLTRRLMFFM 420
+T + + +AV+++SF+ GLNPLEC H+++ R + FS+NAD+PGTLTR+LM+ +
Sbjct: 793 -ESTSERVGGQNLYAVIKNSFIEGLNPLECLLHAISGRANFFSENADVPGTLTRKLMYHL 851
Query: 421 RDLYQAYDGTVRNLYGNQLIQFSYDTDKDSSCDSGFQEGTVGGEPVGALSACAISEAAYS 480
RD++ AYDGTVR+ YG Q++QFSYD+ D D G PVG +AC+ISEAAY
Sbjct: 852 RDIHVAYDGTVRSSYGQQIVQFSYDS-VDDLVDK-------LGAPVGCRAACSISEAAYG 903
Query: 481 ALGQPISLLETSPLLNLKNVLECGSRKKSGDQTVSLFLSDKLGKQRYGFEYAALEVKNYL 540
AL P++ LE SPL+NL+ V +C SGD LFLS L K RYG EYA+LEVKN+L
Sbjct: 904 ALEHPVNGLEDSPLMNLQEVFKCHKATNSGDHIGLLFLSRHLKKYRYGLEYASLEVKNHL 963
Query: 541 ERVMFSDIVSTVMIMFTPQSSSLEIFNP--WVCHFHLDKEIVARRKLTVHSVIESLYRRY 598
ERV FSD+V T+MI++ +I N W HFH++K ++ +++L + V++ L + Y
Sbjct: 964 ERVNFSDLVETIMIIYDGHD---KIRNEGMWTTHFHINKAMMKKKRLGLRFVVDELAKEY 1020
Query: 599 ESLTKESKVTFPNLKISSNRKC--SKEGGYASLNKEKEDVDCISVTIVESSRSSAKLEAV 656
++ + P+++I S RKC EG K CI+V S ++L+ +
Sbjct: 1021 DTTRDQLNNAIPSIRI-SRRKCLVGDEG-------VKSSSCCIAVVAHAERNSISQLDTI 1072
Query: 657 RDLMIPFLLGTVIKGFLEIKKVDILWSNRSKVSNSYAGSSGELYLRVTMSSDGDSGRFWG 716
+ +IP +L T++KGFLE K V+I + GEL ++V MS GRFW
Sbjct: 1073 KTRVIPSILDTLLKGFLEFKDVEIQCPH-----------DGELLVKVCMSEHCKGGRFWP 1121
Query: 717 VLINHCHRIMPMIDWTRSHPDNIHHFCSAYGIDAGRQYFLHSLASATTETGKSILPKHLH 776
L N C +M +IDW S P N+ +YGID+ +YF+ SL SATT+TG++I +HL
Sbjct: 1122 TLQNACIPVMELIDWELSQPSNVSDIFCSYGIDSAWKYFVESLKSATTDTGRNIRREHLL 1181
Query: 777 LVANSLSASGEFVGLNAKGIGRQRKHASVSSPFVQACFSNPGTSFIKAAKSGVLDDLQGC 836
++A+SLS +G+F L+++G+ +QR S+SSPF +ACFS P SFI AAK +D+L G
Sbjct: 1182 VIADSLSVTGQFHALSSQGLKQQRTRLSISSPFSEACFSRPAQSFINAAKQCSVDNLCGS 1241
Query: 837 LDALAWGKCMSMGTSGQFDIMHSEKVEEFPESADVYSLL----IANFDQLNDKVDIPHYH 892
LDA+AWGK GTSG F+IMHS K E ++ +Y L + NF++ + +D
Sbjct: 1242 LDAVAWGKEPFNGTSGPFEIMHSGKPHEPEQNESIYDFLCSSKVRNFEK--NHLDTRRQS 1299
Query: 893 NRSSNKCDSEFSRKNGGYALKEYKQS--KSFIRNFVTV-NDIQKLAFESRSILSRYSIDQ 949
+++ C G + + + F+ V++ ++I + +++L Y ++
Sbjct: 1300 TENASICRLACKSSKGSTTVNGVAITIDQDFLHAKVSIWDNIIDMRTSLQNMLREYPLNG 1359
Query: 950 VISDHDKITMLRVLHFHPRKNEKLGCGPADIKVGWHPVHKDSRCFHIIRSDESVEDFSYR 1009
+++ DK ++ L FH R EK+G G +IK+G +P H +RCF ++R+D++ EDFSY
Sbjct: 1360 YVAEPDKSQLIEALKFHSRGAEKIGVGVREIKIGLNPSHPGTRCFILLRNDDTTEDFSYH 1419
Query: 1010 KCILRALEIVDP 1021
KC+ A + + P
Sbjct: 1420 KCVQGAADSISP 1431
>B9G500_ORYSJ (tr|B9G500) DNA-directed RNA polymerase OS=Oryza sativa subsp.
japonica GN=OsJ_30285 PE=3 SV=1
Length = 1384
Score = 718 bits (1853), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/1039 (39%), Positives = 607/1039 (58%), Gaps = 80/1039 (7%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
+I+LS ++LPI S V+INPLCC P +GDFDGDCLHGY+PQ++ +RVEL+ LV+L Q++N
Sbjct: 388 LIALSAKLLPIQSAVAINPLCCDPFKGDFDGDCLHGYVPQTLQSRVELDGLVSLSGQMLN 447
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCDK-KLTPPPSIIKAPSRNNS 119
Q GR+L+SL+ DSL AA+ L V L E QQLQ+LC TP PS++K+ + S
Sbjct: 448 AQDGRSLVSLTHDSLAAAHQLTSADVFLQKAEFQQLQLLCSSISPTPEPSVVKSANFQGS 507
Query: 120 LWSGKQLFSMLLPSNFDYSFPPNGVSVSDGELTSSFESSGWLRDSECNIFQRLVERFQDK 179
LW+GKQLF MLLPS + SF + + D E+ + S WL+++ ++F + + + K
Sbjct: 508 LWTGKQLFGMLLPSGMNISFD-QKLHIKDSEVLTCSSGSFWLQNNTSSVFSVMFKEYGSK 566
Query: 180 TLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGLQEAEQACDFNQL 239
L L Q VLCE+L+M G +R+ + EEI L EAE+A Q+
Sbjct: 567 ALEFLSSTQDVLCEFLTMKGLSVSLSDFYLFSDHYSRKKLSEEIHLALDEAEEAFQIKQI 626
Query: 240 LVD--------HY--CDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHMFR 289
L++ HY D LS S SD +S + + S+ F+ +F
Sbjct: 627 LLNTVSIPNLKHYDGPDNLSNSHGQSDFT------------QVSLPIIKSSITGFKSVFN 674
Query: 290 NIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCAAW 349
++ +V ++ SK N+ + M +GSKG++LK VQ + C+GLQ +R+P ELSC +W
Sbjct: 675 DLLKMVLQHVSKDNSMMAMINSGSKGSVLKFVQQTACVGLQLPASTFPFRIPSELSCVSW 734
Query: 350 NSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNADLP 409
N +K LN + +NT + + +AV+ +SFL GLNPLEC H+++ R + FS+NAD+P
Sbjct: 735 NRQKSLNC-EITNNTSECMAGQNMYAVIRNSFLDGLNPLECLLHAISGRANFFSENADVP 793
Query: 410 GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTDKDSSCDSGFQEGTVGGEPVGAL 469
GTLTR+LM+ +RD Y AYDGTVR+ YG Q++QFSYDT + D EG G PVG+
Sbjct: 794 GTLTRKLMYHLRDTYVAYDGTVRSSYGRQIVQFSYDTADGMNNDHDL-EGEPGA-PVGSW 851
Query: 470 SACAISEAAYSALGQPISLLETSPLLNLKNVLECGSRKKSGDQTVSLFLSDKLGKQRYGF 529
+AC+ISEAAY AL P++ LE SPL+NL+ VL+C KS T LFLS L K RYGF
Sbjct: 852 AACSISEAAYGALDHPVNALEDSPLMNLQEVLKCHKGTKSAVHTGLLFLSKYLKKYRYGF 911
Query: 530 EYAALEVKNYLERVMFSDIVSTVMIMFTPQSSSLEIFNPWVCHFHLDKEIVARRKLTVHS 589
EYA+LEVK++LERV FSD+V D E + ++L +
Sbjct: 912 EYASLEVKDHLERVDFSDLV--------------------------DTETMKIKRLRLGF 945
Query: 590 VIESLYRRYESLTKESKVTFPNLKISSNRKCSKEGGYASLNKEKEDVDCISVTIVESSRS 649
++ L +Y +L K+ P++ IS + KCS G N+ C+++ S S
Sbjct: 946 IVRELIDQYNALRKKLNNMIPSVCISYS-KCSV-GNECVKNRSC----CVTMVAQVESNS 999
Query: 650 SAKLEAVRDLMIPFLLGTVIKGFLEIKKVDILWSNRSKVSNSYAGSSGELYLRVTMSSDG 709
+++L+ +++ +IP +L T++KGFLE + V + S EL ++V MS
Sbjct: 1000 TSQLDIIKERVIPSILATLLKGFLEFENVKVECQQDS-----------ELVVKVGMSEHC 1048
Query: 710 DSGRFWGVLINHCHRIMPMIDWTRSHPDNIHHFCSAYGIDAGRQYFLHSLASATTETGKS 769
+G+FW L N C IM +IDW RS P+ ++ +YGID+ +YF+ SL S T G++
Sbjct: 1049 KTGKFWATLQNACIPIMELIDWERSRPERVYDIFCSYGIDSAWKYFVESLRSTTDAIGRN 1108
Query: 770 ILPKHLHLVANSLSASGEFVGLNAKGIGRQRKHASVSSPFVQACFSNPGTSFIKAAKSGV 829
I +HL +VA+ LS SG+F GL+++G+ +QR S+SSPF +ACFS P SFI AAK
Sbjct: 1109 IHRQHLLVVADCLSISGQFHGLSSQGLKQQRAWLSISSPFSEACFSRPAYSFINAAKRDS 1168
Query: 830 LDDLQGCLDALAWGKCMSMGTSGQFDIMHSEKVEEFPESADVYSLLIANFDQLNDKVDIP 889
+D+L G LDA+AWGK GTSG F +++S K ++ ++ ++Y L Q +K +
Sbjct: 1169 VDNLSGALDAIAWGKEPCAGTSGPFKVLYSGKSQKTKQNKNIYDFLHNPEVQALEKNFMD 1228
Query: 890 HYHNRSS--NKCDSEFSRK-----NGGYALKEYKQSKSFIRNFVTVNDIQKLAFESRSIL 942
Y R+ +K S FS K NGG K S + + + D++ +++L
Sbjct: 1229 TYKQRTEKPSKQRSAFSSKGNATINGGTISVNQKFLDSKVGIWENIIDMRTCL---QNML 1285
Query: 943 SRYSIDQVISDHDKITMLRVLHFHPRKNEKLGCGPADIKVGWHPVHKDSRCFHIIRSDES 1002
Y++++V+++ DK ++ L FHPR +K+G G +IK+G +P H +SRCF + RSD++
Sbjct: 1286 REYTLNEVVTEQDKSCLIEALKFHPRGYDKIGVGIREIKIGVNPGHPNSRCFIVQRSDDT 1345
Query: 1003 VEDFSYRKCILRALEIVDP 1021
DFSY KC+L A + P
Sbjct: 1346 SADFSYNKCVLGAANSISP 1364
>B8BED0_ORYSI (tr|B8BED0) DNA-directed RNA polymerase OS=Oryza sativa subsp. indica
GN=OsI_32338 PE=3 SV=1
Length = 1384
Score = 717 bits (1852), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/1039 (39%), Positives = 607/1039 (58%), Gaps = 80/1039 (7%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
+I+LS ++LPI S V+INPLCC P +GDFDGDCLHGY+PQ++ +RVEL+ LV+L Q++N
Sbjct: 388 LIALSAKLLPIQSAVAINPLCCDPFKGDFDGDCLHGYVPQTLQSRVELDGLVSLSGQMLN 447
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCDK-KLTPPPSIIKAPSRNNS 119
Q GR+L+SL+ DSL AA+ L V L E QQLQ+LC TP PS++K+ + S
Sbjct: 448 AQDGRSLVSLTHDSLAAAHQLTSADVFLQKAEFQQLQLLCSSISPTPEPSVVKSANFQGS 507
Query: 120 LWSGKQLFSMLLPSNFDYSFPPNGVSVSDGELTSSFESSGWLRDSECNIFQRLVERFQDK 179
LW+GKQLF MLLPS + SF + + D E+ + S WL+++ ++F + + + K
Sbjct: 508 LWTGKQLFGMLLPSGMNISFD-QKLHIKDSEVLTCSSGSFWLQNNTSSVFSVMFKEYGSK 566
Query: 180 TLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGLQEAEQACDFNQL 239
L L Q VLCE+L+M G +R+ + EEI L EAE+A Q+
Sbjct: 567 ALEFLSSTQDVLCEFLTMKGLSVSLSDLYLFSDHYSRKKLSEEIHLALDEAEEAFQIKQI 626
Query: 240 LVD--------HY--CDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHMFR 289
L++ HY D LS S SD +S + + S+ F+ +F
Sbjct: 627 LLNTVSIPNLKHYDGPDNLSNSHGQSDFT------------QVSLPIIKSSITGFKSVFN 674
Query: 290 NIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCAAW 349
++ +V ++ SK N+ + M +GSKG++LK VQ + C+GLQ +R+P ELSC +W
Sbjct: 675 DLLKMVLQHVSKDNSMMAMINSGSKGSVLKFVQQTACVGLQLPASTFPFRIPSELSCVSW 734
Query: 350 NSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNADLP 409
N +K LN + +NT + + +AV+ +SFL GLNPLEC H+++ R + FS+NAD+P
Sbjct: 735 NRQKSLNC-EITNNTSECMAGQNMYAVIRNSFLDGLNPLECLLHAISGRANFFSENADVP 793
Query: 410 GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTDKDSSCDSGFQEGTVGGEPVGAL 469
GTLTR+LM+ +RD Y AYDGTVR+ YG Q++QFSYDT + D EG G PVG+
Sbjct: 794 GTLTRKLMYHLRDTYVAYDGTVRSSYGRQIVQFSYDTADGMNNDHDL-EGEPGA-PVGSW 851
Query: 470 SACAISEAAYSALGQPISLLETSPLLNLKNVLECGSRKKSGDQTVSLFLSDKLGKQRYGF 529
+AC+ISEAAY AL P++ LE SPL+NL+ VL+C KS T LFLS L K RYGF
Sbjct: 852 AACSISEAAYGALDHPVNALEDSPLMNLQEVLKCHKGTKSAVHTGLLFLSKYLKKYRYGF 911
Query: 530 EYAALEVKNYLERVMFSDIVSTVMIMFTPQSSSLEIFNPWVCHFHLDKEIVARRKLTVHS 589
EYA+LEVK++LE V FSD+V D E + ++L +
Sbjct: 912 EYASLEVKDHLELVDFSDLV--------------------------DTETMKIKRLRLGF 945
Query: 590 VIESLYRRYESLTKESKVTFPNLKISSNRKCSKEGGYASLNKEKEDVDCISVTIVESSRS 649
++ L +Y +L K+ T P++ IS + KCS G N+ CI++ S S
Sbjct: 946 IVRELIDQYNALRKKLNNTIPSVCISYS-KCSV-GNECVKNRSC----CITMVAQVESNS 999
Query: 650 SAKLEAVRDLMIPFLLGTVIKGFLEIKKVDILWSNRSKVSNSYAGSSGELYLRVTMSSDG 709
+++L+ +++ +IP +L T++KGFLE + V + S EL ++V MS
Sbjct: 1000 TSQLDIIKERVIPSILATLLKGFLEFENVKVECQQDS-----------ELVVKVGMSEHC 1048
Query: 710 DSGRFWGVLINHCHRIMPMIDWTRSHPDNIHHFCSAYGIDAGRQYFLHSLASATTETGKS 769
+G+FW L N C IM +IDW RS P+ ++ +YGID+ +YF+ SL S T G++
Sbjct: 1049 KTGKFWATLQNACIPIMELIDWERSRPERVYDIFCSYGIDSAWKYFVESLRSTTDAIGRN 1108
Query: 770 ILPKHLHLVANSLSASGEFVGLNAKGIGRQRKHASVSSPFVQACFSNPGTSFIKAAKSGV 829
+ +HL +VA+ LS SG+F GL+++G+ +QR S+SSPF +ACFS P SFI AAK
Sbjct: 1109 VHRQHLLVVADCLSISGQFHGLSSQGLKQQRAWLSISSPFSEACFSRPAYSFINAAKRDS 1168
Query: 830 LDDLQGCLDALAWGKCMSMGTSGQFDIMHSEKVEEFPESADVYSLLIANFDQLNDKVDIP 889
+D+L G LDA+AWGK GTSG F +++S K ++ ++ ++Y L Q +K +
Sbjct: 1169 VDNLSGALDAIAWGKEPCAGTSGPFKVLYSGKSQKTKQNKNIYDFLHNPEVQALEKNFMD 1228
Query: 890 HYHNRSS--NKCDSEFSRK-----NGGYALKEYKQSKSFIRNFVTVNDIQKLAFESRSIL 942
Y R+ +K S FS K NGG K S + + + D++ +++L
Sbjct: 1229 TYKQRTEKPSKQRSAFSSKGNATINGGTISVNQKFLDSKVGIWENIIDMRTCL---QNML 1285
Query: 943 SRYSIDQVISDHDKITMLRVLHFHPRKNEKLGCGPADIKVGWHPVHKDSRCFHIIRSDES 1002
Y++++V+++ DK ++ L FHPR +K+G G +IK+G +P H +SRCF + RSD++
Sbjct: 1286 REYTLNEVVTEQDKSCLIEALKFHPRGYDKIGVGIREIKIGVNPGHPNSRCFIVQRSDDT 1345
Query: 1003 VEDFSYRKCILRALEIVDP 1021
DFSY KC+L A + P
Sbjct: 1346 SADFSYNKCVLGAANSISP 1364
>Q01JX0_ORYSA (tr|Q01JX0) DNA-directed RNA polymerase OS=Oryza sativa
GN=OSIGBa0147H17.3 PE=3 SV=1
Length = 1407
Score = 705 bits (1820), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/1030 (38%), Positives = 592/1030 (57%), Gaps = 62/1030 (6%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
+I+LS ++L S VSINPLCC P +GDFDGDCLHGYIPQ + +R+EL ELV+L QL+N
Sbjct: 411 LIALSAKLLSTQSAVSINPLCCDPFKGDFDGDCLHGYIPQCLQSRIELEELVSLSGQLLN 470
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCDK-KLTPPPSIIKAPSRNNS 119
Q GR+L+SL+ DSL AA+ L V L E QQLQML LTP PS+ K+ +
Sbjct: 471 QQDGRSLVSLTHDSLAAAHQLTNADVFLEKAEFQQLQMLSSSISLTPMPSVFKSTNSQGP 530
Query: 120 LWSGKQLFSMLLPSNFDYSFPPNGVSVSDGELTSSFESSGWLRDSECNIFQRLVERFQDK 179
LW+GKQLF MLLP + SF + + D E+ + S WL+++ ++F + + + K
Sbjct: 531 LWTGKQLFGMLLPYGMNISFD-QKLHIKDSEVLTCSSGSFWLQNNTSSLFSVMFKEYGCK 589
Query: 180 TLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGLQEAEQACDFNQL 239
L L Q VLCE+L+M G +R + EE+ L EAE+A Q+
Sbjct: 590 ALEFLSSTQDVLCEFLTMWGLSVSLSDLYLFSDHYSRRKLSEEVHLALDEAEEAFQIKQI 649
Query: 240 LVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHMFRNIQSLVDKYA 299
L++ D+ ++ D S +S + S+ +F+ +F ++ +V +Y
Sbjct: 650 LLNSVSIPNLKYYDGGDDRSNTDEQS--GFTQVSLPIIRSSMTSFKSVFNDLLKMVQQYV 707
Query: 300 SKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCAAWNSEKGLNSMP 359
SK N+ +TM +GSKG++LK VQ + C+GLQ + +R+P +LSC +WN K LN
Sbjct: 708 SKDNSMMTMINSGSKGSVLKFVQQTACVGLQLPASKFPFRIPSQLSCVSWNRHKSLNC-E 766
Query: 360 MFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNADLPGTLTRRLMFF 419
+ T + + +AV+ +SFL GLNPLEC H+++ R + FS+NAD+PGTLTR+LM+
Sbjct: 767 ITDGTSECVGGQDMYAVIRNSFLDGLNPLECLLHAISGRANFFSENADVPGTLTRKLMYH 826
Query: 420 MRDLYQAYDGTVRNLYGNQLIQFSYDTDKDSSCDSGFQEGTVGGEPV---GALSACAISE 476
+RD Y AYDGTVR+ YG Q+++FSYDT D + + + GEPV G+ +AC+ISE
Sbjct: 827 LRDTYVAYDGTVRSSYGQQIVRFSYDT-----ADGMYSDHDLEGEPVAPVGSWAACSISE 881
Query: 477 AAYSALGQPISLLETSPLLNLKNVLECGSRKKSGDQTVSLFLSDKLGKQRYGFEYAALEV 536
AAY AL P++ LE SPL+NL+ VL+C S D T LFLS L K RYGFEYA+LEV
Sbjct: 882 AAYGALDHPVNSLEDSPLMNLQEVLKCHKGTNSLDHTGLLFLSKHLRKYRYGFEYASLEV 941
Query: 537 KNYLERVMFSDIVSTVMIMFTPQSSSLEIFNPWVCHFHLDKEIVARRKLTVHSVIESLYR 596
K++LERV FSD+V D E + ++L + ++ +
Sbjct: 942 KDHLERVDFSDMV--------------------------DTETMKIKRLGLEFIVREIID 975
Query: 597 RYESLTKESKVTFPNLKISSNRKCSKEGGYASLNKEKEDVDCISVTIVESSRSSAKLEAV 656
+Y +L K+ P++ IS N KCS K C+S+ + S ++L+ +
Sbjct: 976 QYNTLRKQLNNAIPSVSIS-NSKCSVGNECV-----KNQTCCVSMVVQVEINSMSQLDVI 1029
Query: 657 RDLMIPFLLGTVIKGFLEIKKVDILWSNRSKVSNSYAGSSGELYLRVTMSSDGDSGRFWG 716
++ +IP +L T++KGFLE K V + EL L+V MS SG+FW
Sbjct: 1030 KERVIPSILATLLKGFLEFKNVKV-----------QCQEDNELVLKVGMSEHCKSGKFWA 1078
Query: 717 VLINHCHRIMPMIDWTRSHPDNIH-HFCSAYGIDAGRQYFLHSLASATTETGKSILPKHL 775
L N C IM +IDW RS P+ ++ +FCS YGID+ ++F+ SL S T G++I +HL
Sbjct: 1079 TLQNACIPIMELIDWERSRPERVYDNFCS-YGIDSAWKFFVESLRSTTDAIGRNIHRQHL 1137
Query: 776 HLVANSLSASGEFVGLNAKGIGRQRKHASVSSPFVQACFSNPGTSFIKAAKSGVLDDLQG 835
+VA+ LS SG+F GL+++G+ +QR S+SSPF +ACFS P SFI AAK +D+L G
Sbjct: 1138 LVVADCLSVSGQFHGLSSQGLKQQRTWLSISSPFSEACFSRPAHSFINAAKRDSVDNLSG 1197
Query: 836 CLDALAWGKCMSMGTSGQFDIMHSEKVEEFPESADVYSLLIANFDQLNDKVDIPHYHNRS 895
LDA+AWGK G+SG F I++S K E ++ +Y L Q +K + Y R+
Sbjct: 1198 TLDAIAWGKEPCTGSSGPFKILYSGKSHETKQNEHIYDFLHNPEVQALEKNVMDTYRKRT 1257
Query: 896 SNKCDSEFSRKNGGYAL---KEYKQSKSFIRNFVTV-NDIQKLAFESRSILSRYSIDQVI 951
+ + G A ++ F+ + V + +I + +++L Y++++V+
Sbjct: 1258 EKTSKRRSALNSEGNATINGGAISFNQKFLNSKVGIWENIIDMRTSLQNMLREYTLNEVV 1317
Query: 952 SDHDKITMLRVLHFHPRKNEKLGCGPADIKVGWHPVHKDSRCFHIIRSDESVEDFSYRKC 1011
++ DK ++ L FHPR +K+G G +IK+G +P H SRCF ++R+D++ DFSY KC
Sbjct: 1318 TEQDKSCLIEALKFHPRGYDKIGVGIREIKIGVNPGHPSSRCFIVLRNDDTTADFSYNKC 1377
Query: 1012 ILRALEIVDP 1021
+L A + P
Sbjct: 1378 VLGAANSISP 1387
>M8C5N9_AEGTA (tr|M8C5N9) DNA-directed RNA polymerase III subunit RPC1 OS=Aegilops
tauschii GN=F775_07056 PE=4 SV=1
Length = 1334
Score = 679 bits (1753), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/1034 (38%), Positives = 581/1034 (56%), Gaps = 125/1034 (12%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
+I LS ++LP+ SV+SINPLCC+PL GDFDGDCLHGY+PQS+ +RVEL ELV+L QL+N
Sbjct: 396 LIGLSAKLLPVQSVLSINPLCCAPLAGDFDGDCLHGYVPQSIQSRVELGELVSLSHQLLN 455
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCDKKL--TPPPSIIKAPSRNN 118
Q GR+L+SL+ DSL AAY+L VLL E+QQ QML L TP P+I+K+ +
Sbjct: 456 AQDGRSLVSLTHDSLAAAYLLTSSEVLLKKTEVQQFQMLLCHPLSPTPGPAIMKSIHSHG 515
Query: 119 SLWSGKQLFSMLLPSNFDYSFPPNGVSVSDGELTSSFESSGWLRDSECNIFQRLVERFQD 178
LW+GKQLFSMLLPS+ +S P ++S +F + +++ D
Sbjct: 516 PLWTGKQLFSMLLPSDMSFSIEP--------------------KNSISGLFSVMFKQYGD 555
Query: 179 KTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGLQEAEQACDFNQ 238
K L LL AQ VLCE+L+M G +R + + ++ L +AE+A Q
Sbjct: 556 KALELLSSAQDVLCEFLTMRGLSVSLSDIYLFPDHDSRRKLADGVNLALDDAEEAFRIKQ 615
Query: 239 LLVD----------HYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHMF 288
+L+ C LS S + S+ + S + + + S+ AF+ +F
Sbjct: 616 ILLSPDSIPILKCYDDCADLSQSYEQSNFIQS------------NLPIIKSSIMAFKSVF 663
Query: 289 RNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCAA 348
++Q +V ++ +K N+ + M AGSKG++LK VQ + C+GLQ R +R+P ELSCA+
Sbjct: 664 SDLQKMVQQHTAKNNSMMMMTNAGSKGSMLKFVQQTACVGLQLPASRFPFRIPSELSCAS 723
Query: 349 WNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNADL 408
WN K T + + +AV+ +SF GLNPLEC HS++ R + FS+NAD+
Sbjct: 724 WNRHKS-------EGTGECLGGQNLYAVIRNSFAGGLNPLECLLHSISGRANFFSENADV 776
Query: 409 PGTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTDKDSSCDSGFQEGTVGGEPVGA 468
PGTLTR+LM+ +RDLY AYDGTVR+ YG Q++QF+YDT +D D EG +G PVG+
Sbjct: 777 PGTLTRKLMYHLRDLYVAYDGTVRSSYGQQIMQFTYDTAEDMCSDRNV-EGELGA-PVGS 834
Query: 469 LSACAISEAAYSALGQPISLLETSPLLNLKNVLECGSRKKSGDQTVSLFLSDKLGKQRYG 528
+AC+ISEAAY AL P++ LE SPL+NL++VL+C S D LFLS L K RYG
Sbjct: 835 WAACSISEAAYGALDHPVNSLEESPLMNLQDVLKCQKGGTSMDHVGLLFLSKNLKKYRYG 894
Query: 529 FEYAALEVKNYLERVMFSDIVSTVMIMFTPQSSSLEIFNPWVCHFHLDKEIVARRKLTVH 588
EYA+LEVK++LE V FSD+V TVMI++ +PW+ HFHL +E++ +++L +
Sbjct: 895 LEYASLEVKDHLEPVNFSDLVDTVMILYGGCGIESTKGSPWITHFHLSQEMMTKKRLGLT 954
Query: 589 SVIESLYRRYESLTKESKVTFPNLKISSNRKCSKEGGYASLNKEKEDVDCISVTIVESSR 648
V+E L +Y + K K+ FP + IS KCS + + N++ CI+V + S
Sbjct: 955 LVVEELTEQYNA--KRDKLNFPKVYISKG-KCSAD--HECGNRQ---TCCITVVTQDDSN 1006
Query: 649 SSAKLEAVRDLMIPFLLGTVIKGFLEIKKVDILWSNRSKVSNSYAGSSGELYLRVTMSSD 708
S ++L+ ++ +IP LL ++KGFLE KKV+I S EL ++V MS +
Sbjct: 1007 SMSQLDTIKKRVIPNLLALLVKGFLEFKKVEIQCQEDS-----------ELVVKVVMSEE 1055
Query: 709 G-DSGRFWGVLINHCHRIMPMIDWTRSHPDNIHHFCSAYGIDAGRQYFLHSLASATTETG 767
S +FW L C IM +IDW RS P +++ +YGID+ +YF+ SL S T + G
Sbjct: 1056 HCKSVKFWATLQKSCIAIMELIDWERSRPGSVYDIFCSYGIDSAWKYFVESLRSKTDDIG 1115
Query: 768 KSILPKHLHLVANSLSASGEFVGLNAKGIGRQRKHASVSSPFVQACFSNPGTSFIKAAKS 827
++I +HL +VAN C S P +FI AAK
Sbjct: 1116 RNIRREHLLVVAN--------------------------------CLSRPAHTFINAAKQ 1143
Query: 828 GVLDDLQGCLDALAWGKCMSMGTSGQFDIMHSEKVEEFPESADVYSLLIANFDQLNDKVD 887
+D+L G +DA+AWGK S GTSG F I++S K + ++Y L N ++ +
Sbjct: 1144 SSVDNLCGTVDAMAWGKEPSTGTSGPFKIIYSGKAHAPIPNENIYDFL--NSPEVW-QAP 1200
Query: 888 IPHYHNRSSNKCDSEFSRKNGGYALKEYKQSKSFIRNFVTVNDIQKLAFESRSILSRYSI 947
+ N S+ + +F + ++I + +++L Y +
Sbjct: 1201 GEAFLNGSTISVEQDF-----------------LVATVGIWDNIIDMRTCLQNMLREYQL 1243
Query: 948 DQVISDHDKITMLRVLHFHPRKNEKLGCGPADIKVGWHPVHKDSRCFHIIRSDESVEDFS 1007
++ + + DK ++ L FHPR EK+G G DIK+G HP H +RCF ++R D + EDFS
Sbjct: 1244 NECVVELDKSRVIEALRFHPRGREKIGAGIKDIKIGHHPSHPGTRCFIMVRDDGTTEDFS 1303
Query: 1008 YRKCILRALEIVDP 1021
Y+KC+ A + + P
Sbjct: 1304 YKKCVQAAADSISP 1317
>B9FC30_ORYSJ (tr|B9FC30) DNA-directed RNA polymerase OS=Oryza sativa subsp.
japonica GN=OsJ_15844 PE=3 SV=1
Length = 1623
Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/1025 (37%), Positives = 573/1025 (55%), Gaps = 68/1025 (6%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
+I+LS ++L S VSINPLCC P +GDFDGDCLHGYIPQ + +R+EL ELV L QL+N
Sbjct: 405 LIALSAKLLSTQSAVSINPLCCDPFKGDFDGDCLHGYIPQCLQSRIELEELVGLSGQLLN 464
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCDK-KLTPPPSIIKAPSRNNS 119
Q GR+L+SL+ DSL AA+ L V L E QQLQML LTP PS+ K+ +
Sbjct: 465 QQDGRSLVSLTHDSLAAAHQLTNADVFLEKAEFQQLQMLSSSISLTPMPSVFKSTNSQGP 524
Query: 120 LWSGKQLFSMLLPSNFDYSFPPNGVSVSDGELTSSFESSGWLRDSECNIFQRLVERFQDK 179
LW+GKQLF MLLP + SF + + D E+ + S WL+++ ++F + + + K
Sbjct: 525 LWTGKQLFGMLLPYGMNISFD-QKLHIKDSEVLTCSSGSFWLQNNTSSLFSVMFKEYGCK 583
Query: 180 TLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGLQEAEQACDFNQL 239
L L Q VLCE+L+M G +R + EE+ L EAE+A Q+
Sbjct: 584 ALEFLSSTQDVLCEFLTMWGLSVSLSDLYLFSDHYSRRKLSEEVHLALDEAEEAFQIKQI 643
Query: 240 LVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHMFRNIQSLVDKYA 299
L++ D+ ++ D S +S + S+ +F+ +F ++ +V +Y
Sbjct: 644 LLNSVSIPNLKYYDGGDDRSNTDEQS--GFTQVSLPIIRSSMTSFKSVFNDLLKMVQQYV 701
Query: 300 SKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCAAWNSEKGLNSMP 359
SK N+ +TM +GSKG++LK VQ + C+GLQ + +R+P +LSC +WN K LN
Sbjct: 702 SKDNSMMTMINSGSKGSVLKFVQQTACVGLQLPASKFPFRIPSQLSCVSWNRHKSLNC-E 760
Query: 360 MFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNADLPGTLTRRLMFF 419
+ T + + +AVV +SFL GLNPLEC H+++ R + FS+NAD+PGTLTR+LM+
Sbjct: 761 ITDGTSECVGGQDMYAVVRNSFLDGLNPLECLLHAISGRANFFSENADVPGTLTRKLMYH 820
Query: 420 MRDLYQAYDGTVRNLYGNQLIQFSYDTDKDSSCDSGFQEGTVGGEPVGALSACAISEAAY 479
+RD Y AYDGTVR+ YG Q+++FSYDT D EG G PVG+ +AC+ISEAAY
Sbjct: 821 LRDTYVAYDGTVRSSYGQQIVRFSYDTADGMYSDHDL-EGEPGA-PVGSWAACSISEAAY 878
Query: 480 SALGQPISLLETSPLLNLKNVLECGSRKKSGDQTVSLFLSDKLGKQRYGFEYAALEVKNY 539
AL P++ LE SPL+NL+ VL+C S D T LFLS L K RYGFEYA+LEVK++
Sbjct: 879 GALDHPVNSLEDSPLMNLQEVLKCHKGTNSLDHTGLLFLSKHLRKYRYGFEYASLEVKDH 938
Query: 540 LERVMFSDIVSTVMIMFTPQSSSLEIFNPWVCHFHLDKEIVARRKLTVHSVIESLYRRYE 599
LERV FSD+V TV+I++ NPW+ HFHL++E + ++L + ++ + +Y
Sbjct: 939 LERVDFSDMVDTVIILYGGSDMQKTKGNPWITHFHLNQETMKIKRLGLEFIVREIIDQYN 998
Query: 600 SLTKESKVTFPNLKISSNR--------KCSKEGGYASLNKE--KEDVDCISVTIVESSRS 649
+L K+ P++ IS++ K K G E K C+++ + S
Sbjct: 999 TLRKQLNNAIPSVSISNSETLHLKMENKSGKLGKNLGTGNECVKNQTCCVTMVVQVEINS 1058
Query: 650 SAKLEAVRDLMIPFLLGTVIKGFLEIKKVDILWSNRSKVSNSYAGSSGELYLRVTMSSDG 709
++L+ +++ +IP +L T++KGFLE K V + EL L+V MS
Sbjct: 1059 MSQLDVIKERVIPSILATLLKGFLEFKNVKV-----------QCQEDNELVLKVGMSEHC 1107
Query: 710 DSGRFWGVLINHCHRIMPMIDWTRSHPDNIH-HFCSAYGIDAGRQYFLHSLASATTETGK 768
SG+FW L N C IM +IDW RS P+ ++ +FCS YGID+ ++F+ SL S T G+
Sbjct: 1108 KSGKFWATLQNACIPIMELIDWERSRPERVYDNFCS-YGIDSAWKFFVESLRSTTDAIGR 1166
Query: 769 SILPKHLHLVANSLSASGEFVGLNAKGIGRQRKHASVSSPFVQACFSNPGTSFIKAAKSG 828
+I +HL +VA+ C S P SFI AAK
Sbjct: 1167 NIHRQHLLVVAD--------------------------------CLSRPAHSFINAAKRD 1194
Query: 829 VLDDLQGCLDALAWGKCMSMGTSGQFDIMHSEKVEEFPESADVYSLLIANFDQLNDKVDI 888
+D+L G LDA+AWGK G+SG F I++S K E ++ +Y L Q +K +
Sbjct: 1195 SVDNLSGTLDAIAWGKEPCAGSSGPFKILYSGKSHETKQNEHIYDFLHNPEVQALEKNVM 1254
Query: 889 PHYHNRSSNKCDSEFSRKNGGYALKEYKQSKSFIRNFVTVN-----DIQKLAFESRSILS 943
Y R+ + + G A + SF + F+ +I + +++L
Sbjct: 1255 DTYRKRTEKTSKRRSALNSEGNATIN-GGAISFNQKFLNAKVGIWENIIDMRTSLQNMLR 1313
Query: 944 RYSIDQVISDHDKITMLRVLHFHPRKNEKLGCGPADIKVGWHPVHKDSRCFHIIRSDESV 1003
Y++++V+++ DK ++ L FHPR +K+G G +IK+G +P H SRCF ++R+D++
Sbjct: 1314 EYTLNEVVTEQDKSCLMEALKFHPRGYDKIGVGIREIKIGVNPGHPSSRCFIVLRNDDTT 1373
Query: 1004 EDFSY 1008
DFSY
Sbjct: 1374 ADFSY 1378
>B8AT49_ORYSI (tr|B8AT49) DNA-directed RNA polymerase OS=Oryza sativa subsp. indica
GN=OsI_17044 PE=3 SV=1
Length = 1598
Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/1024 (37%), Positives = 575/1024 (56%), Gaps = 66/1024 (6%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
+I+LS ++L S VSINPLCC P +GDFDGDCLHGYIPQ + +R+EL ELV+L QL+N
Sbjct: 384 LIALSAKLLSTQSAVSINPLCCDPFKGDFDGDCLHGYIPQCLQSRIELEELVSLSGQLLN 443
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCDK-KLTPPPSIIKAPSRNNS 119
Q GR+L+SL+ DSL AA+ L V L E QQLQML LTP PS+ K+ +
Sbjct: 444 QQDGRSLVSLTHDSLAAAHQLTNADVFLEKAEFQQLQMLSSSISLTPMPSVFKSTNSQGP 503
Query: 120 LWSGKQLFSMLLPSNFDYSFPPNGVSVSDGELTSSFESSGWLRDSECNIFQRLVERFQDK 179
LW+GKQLF MLLP + SF + + D E+ + S WL+++ ++F + + + K
Sbjct: 504 LWTGKQLFGMLLPYGMNISFD-QKLHIKDSEVLTCSSGSFWLQNNTSSLFSVMFKEYGCK 562
Query: 180 TLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGLQEAEQACDFNQL 239
L L Q VLCE+L+M G +R + EE+ L EAE+A Q+
Sbjct: 563 ALEFLSSTQDVLCEFLTMWGLSVSLSDLYLFSDHYSRRKLSEEVHLALDEAEEAFQIKQI 622
Query: 240 LVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHMFRNIQSLVDKYA 299
L++ D+ ++ D S +S + S+ +F+ +F ++ +V +Y
Sbjct: 623 LLNSVSIPNLKYYDGGDDRSNTDEQS--GFTQVSLPIIRSSMTSFKSVFNDLLKMVQQYV 680
Query: 300 SKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCAAWNSEKGLNSMP 359
SK N+ +TM +GSKG++LK VQ + C+GLQ + +R+P +LSC +WN K LN
Sbjct: 681 SKDNSMMTMINSGSKGSVLKFVQQTACVGLQLPASKFPFRIPSQLSCVSWNRHKSLNC-E 739
Query: 360 MFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNADLPGTLTRRLMFF 419
+ T + + +AV+ +SFL GLNPLEC H+++ R + FS+NAD+PGTLTR+LM+
Sbjct: 740 ITDGTSECVGGQDMYAVIRNSFLDGLNPLECLLHAISGRANFFSENADVPGTLTRKLMYH 799
Query: 420 MRDLYQAYDGTVRNLYGNQLIQFSYDTDKDSSCDSGFQEGTVGGEPVGALSACAISEAAY 479
+RD Y AYDGTVR+ YG Q+++FSYDT D EG G PVG+ +AC+ISEAAY
Sbjct: 800 LRDTYVAYDGTVRSSYGQQIVRFSYDTADGMYSDHDL-EGEPGA-PVGSWAACSISEAAY 857
Query: 480 SALGQPISLLETSPLLNLKNVLECGSRKKSGDQTVSLFLSDKLGKQRYGFEYAALEVKNY 539
AL P++ LE SPL+NL+ VL+C S D T LFLS L K RYGFEYA+LEVK++
Sbjct: 858 GALDHPVNSLEDSPLMNLQEVLKCHKGTNSLDHTGLLFLSKHLRKYRYGFEYASLEVKDH 917
Query: 540 LERVMFSDIVSTVMIMFTPQSSSLEIFNPWVCHFHLDKEIVARRKLTVHSVIESLYRRYE 599
LERV FSD+V TV+I++ NPW+ HFHL +E + ++L + ++ + +Y
Sbjct: 918 LERVDFSDMVDTVIILYGGSDMQKTKGNPWITHFHLSQETMKIKRLGLEFIVREIIDQYN 977
Query: 600 SLTKESKVTFPNLKISSNR--------KCSKEGGYASLNKE--KEDVDCISVTIVESSRS 649
+L K+ P++ IS++ K K G E K C+S+ + S
Sbjct: 978 TLRKQLNNAIPSVSISNSETLHLKMENKSGKLGKNLGTGNECVKNQTCCVSMVVQVEINS 1037
Query: 650 SAKLEAVRDLMIPFLLGTVIKGFLEIKKVDILWSNRSKVSNSYAGSSGELYLRVTMSSDG 709
++L+ +++ +IP +L T++KGFLE K V + EL L+V MS
Sbjct: 1038 MSQLDVIKERVIPSILATLLKGFLEFKNVKV-----------QCQEDNELVLKVGMSEHC 1086
Query: 710 DSGRFWGVLINHCHRIMPMIDWTRSHPDNIH-HFCSAYGIDAGRQYFLHSLASATTETGK 768
SG+FW L N C IM +IDW RS P+ ++ +FCS YGID+ ++F+ SL S T G+
Sbjct: 1087 KSGKFWATLQNACIPIMELIDWERSRPERVYDNFCS-YGIDSAWKFFVESLRSTTDAIGR 1145
Query: 769 SILPKHLHLVANSLSASGEFVGLNAKGIGRQRKHASVSSPFVQACFSNPGTSFIKAAKSG 828
+I +HL +VA+ C S P SFI AAK
Sbjct: 1146 NIHRQHLLVVAD--------------------------------CLSRPAHSFINAAKRD 1173
Query: 829 VLDDLQGCLDALAWGKCMSMGTSGQFDIMHSEKVEEFPESADVYSLLIANFDQLNDKVDI 888
+D+L G LDA+AWGK G+SG F I++S K E ++ +Y L Q +K +
Sbjct: 1174 SVDNLSGTLDAIAWGKEPCTGSSGPFKILYSGKSHETKQNEHIYDFLHNPEVQALEKNVM 1233
Query: 889 PHYHNRS---SNKCDSEFSRKNGGYALKEYKQSKSFIRNFVTV-NDIQKLAFESRSILSR 944
Y R+ S + + S N ++ F+ + V + +I + +++L
Sbjct: 1234 DTYRKRTEKTSKRRSALNSEGNATINGGAISFNQKFLNSKVGIWENIIDMRTSLQNMLRE 1293
Query: 945 YSIDQVISDHDKITMLRVLHFHPRKNEKLGCGPADIKVGWHPVHKDSRCFHIIRSDESVE 1004
Y++++V+++ DK ++ L FHPR +K+G G +IK+G +P H SRCF ++R+D++
Sbjct: 1294 YTLNEVVTEQDKSCLIEALKFHPRGYDKIGVGIREIKIGVNPGHPSSRCFIVLRNDDTTA 1353
Query: 1005 DFSY 1008
DFSY
Sbjct: 1354 DFSY 1357
>M7ZUZ1_TRIUA (tr|M7ZUZ1) DNA-directed RNA polymerase D subunit 1 OS=Triticum
urartu GN=TRIUR3_10627 PE=4 SV=1
Length = 1402
Score = 650 bits (1678), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/1028 (38%), Positives = 572/1028 (55%), Gaps = 133/1028 (12%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
+I LS ++LP+ SV+SINPLCC+PL GDFDGDCLHGY+PQS+ +RVEL ELV+L QL+N
Sbjct: 432 VIGLSAKLLPVQSVLSINPLCCAPLAGDFDGDCLHGYVPQSIQSRVELEELVSLSHQLLN 491
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCDKKL--TPPPSIIKAPSRNN 118
Q GR+L+SL+ DSL AAY+L VLL E+QQ QML L TP P+I+K+ +
Sbjct: 492 AQDGRSLVSLTHDSLAAAYLLTSSEVLLKKTEVQQFQMLLCHPLSPTPGPAIMKSIHSHG 551
Query: 119 SLWSGKQLFSMLLPSNFDYSFPPNGVSVSDGELTSSFESSGWLRDSECNIFQRLVERFQD 178
LW+GKQLFSMLLPS+ +S P ++S +F + +++ D
Sbjct: 552 PLWTGKQLFSMLLPSDMSFSIEP--------------------KNSISGLFSVMFKQYGD 591
Query: 179 KTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGLQEAEQACDFNQ 238
K L LL AQ VLCE+L+M G +R + + ++ L +AE+A Q
Sbjct: 592 KALELLSSAQDVLCEFLTMRGLSVSLSDIYLFPDHDSRRKLADGVNLALDDAEEAFRIKQ 651
Query: 239 LLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKH--ISAALSEV--SVDAFRHMFRNIQSL 294
+L+ D +S L+ D+ A + S +YE+ I + L + S+ AF+ +F ++Q +
Sbjct: 652 ILLSP--DSIS-ILKCYDDCADL---SQSYEQSNFIQSNLPIIKSSIMAFKSVFSDLQKM 705
Query: 295 VDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCAAWNSEKG 354
V ++ +K N+ + M AGSKG++LK VQ + C+GLQ R +R+P ELSCA+WN K
Sbjct: 706 VQQHTAKNNSMMMMTNAGSKGSMLKFVQQTACVGLQLPASRFPFRIPSELSCASWNRHKS 765
Query: 355 LNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNADLPGTLTR 414
T + + +AV+ +SF GLNPLEC HS++ R + FS+NAD+PGTLTR
Sbjct: 766 -------EGTGECLGGQNLYAVIRNSFAGGLNPLECLLHSISGRANFFSENADVPGTLTR 818
Query: 415 RLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTDKDSSCDSGFQEGTVGGEPVGALSACAI 474
+LM+ +RDLY AYDGTVR+ YG Q++QF+YDT +D D EG +G PVG+ +AC+I
Sbjct: 819 KLMYHLRDLYVAYDGTVRSSYGQQIMQFTYDTAEDMCSDRNV-EGELGA-PVGSWAACSI 876
Query: 475 SEAAYSALGQPISLLETSPLLNLKNVLECGSRKKSGDQTVSLFLSDKLGKQRYGFEYAAL 534
SEAAY AL P++ LE SPL+NL++VL+C S D LFLS L K RYG EYA+L
Sbjct: 877 SEAAYGALDHPVNSLEESPLMNLQDVLKCQKGGTSMDHVGLLFLSKNLKKYRYGLEYASL 936
Query: 535 EVKNYLERVMFSDIVSTVMIMFTPQSSSLEIFNPWVCHFHLDKEIVARRKLTVHSVIESL 594
EVK++LE V FSD+V TVMI++ + W+ HFHL +E++ +++L + V+E L
Sbjct: 937 EVKDHLEPVNFSDLVDTVMILYGGCGIESTKGSAWITHFHLSQEMMTKKRLGLTLVVEEL 996
Query: 595 YRRYESLTKESKVTFPNLKISSN--------RKCSKEG---GYASLNKEKEDVDC----- 638
+Y + K K+ FP + IS R+ G G A ++K D +C
Sbjct: 997 TEQYNA--KRDKLNFPKVYISKGVNTAGKMVRRLFGRGIRLGIARMSKCSADNECGNRQT 1054
Query: 639 --ISVTIVESSRSSAKLEAVRDLMIPFLLGTVIKGFLEIKKVDILWSNRSKVSNSYAGSS 696
I+V + S S ++L+ ++ +IP LL ++KGFLE KKV+I S
Sbjct: 1055 CCITVVTQDDSNSMSQLDTIKKRVIPNLLALLVKGFLEFKKVEIQCQEDS---------- 1104
Query: 697 GELYLRVTMSSDG-DSGRFWGVLINHCHRIMPMIDWTRSHPDNIHHFCSAYGIDAGRQYF 755
EL ++V MS + S +FW L C IM +IDW RS P +++ +YGID+ +YF
Sbjct: 1105 -ELVVKVVMSEEHCKSVKFWATLQKSCIAIMELIDWERSRPGSVYDIFCSYGIDSAWKYF 1163
Query: 756 LHSLASATTETGKSILPKHLHLVANSLSASGEFVGLNAKGIGRQRKHASVSSPFVQACFS 815
+ SL S T + G++I +HL +VAN C S
Sbjct: 1164 VESLRSKTDDIGRNIRREHLLVVAN--------------------------------CLS 1191
Query: 816 NPGTSFIKAAKSGVLDDLQGCLDALAWGKCMSMGTSGQFDIMHSEKVEEFPESADVYSLL 875
P +FI AAK +D+L G +DA+AWGK S GTSG F I++S K + ++Y L
Sbjct: 1192 RPAHTFINAAKQSSVDNLCGTVDAMAWGKEPSTGTSGPFKIIYSGKAHAPIPNENIYDFL 1251
Query: 876 IANFDQLNDKVDIPHYHNRSSNKCDSEFSRKNGGYAL---KEYKQSKSFIRNFVTVND-I 931
+S R+ G A + F+ V + D I
Sbjct: 1252 ------------------------NSPEVRQAPGEAFLNGSTISVEQDFLVAAVGIWDSI 1287
Query: 932 QKLAFESRSILSRYSIDQVISDHDKITMLRVLHFHPRKNEKLGCGPADIKVGWHPVHKDS 991
+ +++L Y +++ + + DK ++ L FHPR EK+G G DIK+G HP H +
Sbjct: 1288 IDMRTCLQNMLREYQLNECVGELDKSRVIEALRFHPRGREKIGAGIEDIKIGHHPSHPGT 1347
Query: 992 RCFHIIRS 999
RCF ++++
Sbjct: 1348 RCFIMVKA 1355
>A5BZZ3_VITVI (tr|A5BZZ3) DNA-directed RNA polymerase OS=Vitis vinifera
GN=VITISV_011232 PE=3 SV=1
Length = 1393
Score = 611 bits (1575), Expect = e-172, Method: Compositional matrix adjust.
Identities = 322/507 (63%), Positives = 391/507 (77%), Gaps = 11/507 (2%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
+I+LSV+VLP++SVVSINPLCCSP RGDFDGDCLHGYIPQSV +RVEL+ELVAL+RQLIN
Sbjct: 425 VIALSVKVLPLNSVVSINPLCCSPFRGDFDGDCLHGYIPQSVDSRVELSELVALNRQLIN 484
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCDKKLTPPPSIIKAPSRNNSL 120
QSGRNLLSLSQDSL+AA+++MEDGVLLNL+++QQL+M C +L P +IIKAP + +
Sbjct: 485 RQSGRNLLSLSQDSLSAAHLVMEDGVLLNLFQMQQLEMFCPYQLQSP-AIIKAPLLDTQV 543
Query: 121 WSGKQLFSMLLPSNFDYSFPPNGVSVSDGELTSSFESSGWLRDSECNIFQRLVERFQDKT 180
W+GKQLFSMLLP F+Y FP NGV +SDGEL SS + S WLRD + N+F LV+ Q K
Sbjct: 544 WTGKQLFSMLLPPGFNYVFPLNGVRISDGELISSSDGSAWLRDIDGNLFSSLVKDCQGKA 603
Query: 181 LNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGLQEAEQACDFNQLL 240
L+ LY AQ+VLCEWLSM G +R+NM++E+ GL AEQ C F QLL
Sbjct: 604 LDFLYAAQEVLCEWLSMRGLSVSLSDIYLSSDSISRKNMIDEVFCGLLVAEQTCHFKQLL 663
Query: 241 VDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHMFRNIQSLVDKYAS 300
VD +FL GS +++ N D+ SL YE+ SAAL + SV AF+ FR+IQ+LV +YA+
Sbjct: 664 VDSSQNFLIGSGENNQNGVVPDVQSLWYERQGSAALCQSSVCAFKQKFRDIQNLVYQYAN 723
Query: 301 KGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCAAWNSEK--GLNSM 358
K N+ L M KAGSKGNLLKLVQ +CLGLQHSLV LS+++P +LSCAAWN +K GL
Sbjct: 724 KDNSLLAMLKAGSKGNLLKLVQQGLCLGLQHSLVPLSFKIPHQLSCAAWNKQKVPGL--- 780
Query: 359 PMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNADLPGTLTRRLMF 418
+ ++T + + YIP+AVVE+SFL GLNPLECF HSV +RDSSFSDNADLPGTLTRRLMF
Sbjct: 781 -IQNDTSEYAESYIPYAVVENSFLMGLNPLECFVHSVTSRDSSFSDNADLPGTLTRRLMF 839
Query: 419 FMRDLYQAYDGTVRNLYGNQLIQFSYDTDKDSSCDSGFQEGT----VGGEPVGALSACAI 474
FMRDLY AYDGTVRN YGNQL+QFSY+ + S+ G E T +GG+PVG++SACAI
Sbjct: 840 FMRDLYIAYDGTVRNAYGNQLVQFSYNIEHTSTPSDGINEDTCAYDMGGQPVGSISACAI 899
Query: 475 SEAAYSALGQPISLLETSPLLNLKNVL 501
SEAAYSAL QPISLLE SPLLNLKN L
Sbjct: 900 SEAAYSALDQPISLLEPSPLLNLKNHL 926
Score = 369 bits (948), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 182/321 (56%), Positives = 239/321 (74%), Gaps = 7/321 (2%)
Query: 495 LNLKNVLECGSRKKSGDQTVSLFLSDKLGKQRYGFEYAALEVKNYLERVMFSDIVSTVMI 554
L L+ VLECG RK + D+TVSLFLS KL K+++GFEY ALEVKN+LE+++FSDIVSTVMI
Sbjct: 1065 LILQRVLECGLRKSTADRTVSLFLSKKLEKRKHGFEYGALEVKNHLEKLLFSDIVSTVMI 1124
Query: 555 MFTPQSSSLEIFNPWVCHFHLDKEIVARRKLTVHSVIESLYRRYESLTKESKVTFPNLKI 614
+F+PQ+ S F+PWVCHFH+ +EI +R L HS+I++LY + S ESK+ P+L+I
Sbjct: 1125 VFSPQNGSKTHFSPWVCHFHVCEEIAKKRSLKPHSIIDALYMKCNSARAESKINLPDLQI 1184
Query: 615 SSNRKCSKEGGYASLNKEKEDVDCISVTIVESSRSSAKLEAVRDLMIPFLLGTVIKGFLE 674
+S + C + + KE D CI+V+IV S +S +L+ VRDL+IPFLLG V+KG L+
Sbjct: 1185 TS-KDC-----FVDMEKEDSDCFCITVSIVNSKKSCIQLDTVRDLVIPFLLGAVVKGLLD 1238
Query: 675 IKKVDILWSNRSKVSNSYAGSSGELYLRVTMSSDGDSGRFWGVLINHCHRIMPMIDWTRS 734
+KKVDILW N + S+ SSG LYLRV +S D FWGVL++ C +IM MIDW RS
Sbjct: 1239 VKKVDILW-NDNPDSDVLKSSSGRLYLRVYVSGDCGKKNFWGVLMDACLQIMDMIDWERS 1297
Query: 735 HPDNIHHFCSAYGIDAGRQYFLHSLASATTETGKSILPKHLHLVANSLSASGEFVGLNAK 794
HPDNIH YGIDAG +YFL+SL SA ++ GK++LP+HL LVA+ LSA+GEFVGLNAK
Sbjct: 1298 HPDNIHDIFVVYGIDAGWKYFLNSLKSAISDIGKTVLPEHLLLVASCLSATGEFVGLNAK 1357
Query: 795 GIGRQRKHASVSSPFVQACFS 815
G+ RQ++ S+SSPF+Q CFS
Sbjct: 1358 GMARQKELTSISSPFMQGCFS 1378
>K3XDU8_SETIT (tr|K3XDU8) DNA-directed RNA polymerase OS=Setaria italica
GN=Si000065m.g PE=3 SV=1
Length = 1303
Score = 580 bits (1494), Expect = e-162, Method: Compositional matrix adjust.
Identities = 324/886 (36%), Positives = 509/886 (57%), Gaps = 42/886 (4%)
Query: 146 VSDGELTSSFESSGWLRDSECNIFQRLVERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXX 205
+ D E+ + S WL++S +F + +++ K L+ L AQ+VLCE+L+M G
Sbjct: 436 IIDSEVLTCSSGSSWLQNSTTGLFSIMFKQYGRKALDFLSSAQEVLCEFLTMRGLSVSLS 495
Query: 206 XXXXXXXXCARENMMEEISYGLQEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDS 265
+R + + + L EAE+A Q+L+D + ++++V D
Sbjct: 496 DLYMFSDHYSRRKLTQGVKLALDEAEEAFRIKQILLDPINIPVLKCHDETEDVTYRQSD- 554
Query: 266 LNYEKHISAALSEV--SVDAFRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQH 323
+I + LS V S+ +F+ +F ++ +V + S N+ + M AGSKG++LK VQ
Sbjct: 555 -----YIQSNLSVVRSSIMSFKDVFNDLLKMVQHHVSNDNSMMVMINAGSKGSMLKYVQQ 609
Query: 324 SMCLGLQHSLVRLSYRMPRELSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLT 383
+ C+GLQ + +R+P +LSC +WN +K LN +T + ++ +AV+ +SF+
Sbjct: 610 TACVGLQLPASKFPFRIPSQLSCVSWNRQKSLNCEA--ESTSEHVEGQNLYAVIRNSFIE 667
Query: 384 GLNPLECFAHSVANRDSSFSDNADLPGTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFS 443
GLNPLEC H+++ R + FS++AD+PGTLTR+LM+ +RDL+ AYDGTVR+ YG ++QFS
Sbjct: 668 GLNPLECLLHAISGRANFFSEHADVPGTLTRKLMYHLRDLHVAYDGTVRSSYGQHIMQFS 727
Query: 444 YDTDKDSSCDSGFQEGTVG--GEPVGALSACAISEAAYSALGQPISLLETSPLLNLKNVL 501
YDT D C+ VG G PVG+ +AC+ISEAAY AL P++ LE SPL+NL+ V
Sbjct: 728 YDTADDMCCNHDL----VGELGAPVGSWAACSISEAAYGALDHPVNGLEDSPLMNLQEVF 783
Query: 502 ECGSRKKSGDQTVSLFLSDKLGKQRYGFEYAALEVKNYLERVMFSDIVSTVMIMFTPQSS 561
+C SGD LFLS L K RY EYA+LEVKN+LERV FSD+V T+MI++
Sbjct: 784 KCHKATNSGDHVGLLFLSKHLKKYRYSLEYASLEVKNHLERVNFSDLVETIMIIYDGCDK 843
Query: 562 SLEIFNPWVCHFHLDKEIVARRKLTVHSVIESLYRRYESLTKESKVTFPNLKISSNRKCS 621
+ + PW HFH+ KE++ +++L + V+E L + Y++ + P++ IS RKCS
Sbjct: 844 TRK-GGPWTTHFHISKEMMKKKRLGLGFVVEELTKEYDATRNQLNNAIPSVHIS-KRKCS 901
Query: 622 KEGGYASLNKEKEDVDCISVTIVESSRSSAKLEAVRDLMIPFLLGTVIKGFLEIKKVDIL 681
G N CI++ S S ++L+ ++ +IP +L T++KGFLE K V+I
Sbjct: 902 V-GDQCVQNS----ACCITLVAQAESNSMSQLDTIKKRVIPSILDTLLKGFLEFKDVEIQ 956
Query: 682 WSNRSKVSNSYAGSSGELYLRVTMSSDGDSGRFWGVLINHCHRIMPMIDWTRSHPDNIHH 741
+ GEL ++V MS +GRFW L N C +M +IDW +S P N++
Sbjct: 957 CRH-----------DGELLVKVGMSEHCKAGRFWATLQNACIPVMELIDWEQSQPKNVYD 1005
Query: 742 FCSAYGIDAGRQYFLHSLASATTETGKSILPKHLHLVANSLSASGEFVGLNAKGIGRQRK 801
+YGID+ + F+ SL S T++ G+++ +HL +VA+SLS +G+F L+++G+ +QR
Sbjct: 1006 IFCSYGIDSAWKCFVESLKSVTSDIGRNVRREHLLIVADSLSVTGQFQALSSQGLNQQRS 1065
Query: 802 HASVSSPFVQACFSNPGTSFIKAAKSGVLDDLQGCLDALAWGKCMSMGTSGQFDIMHSEK 861
S+SSPF +ACFS P SFI AAK +D+L G LDA+AWGK GTSG F+IMH+ K
Sbjct: 1066 RLSISSPFSEACFSRPARSFINAAKHCSVDNLCGSLDAIAWGKEPFNGTSGPFEIMHAGK 1125
Query: 862 VEEFPESADVYSLL----IANFDQLNDKVDIPHYHNRSSNKCDSEFSRKNGGYAL-KEYK 916
E ++ +Y L + NF++ D +D ++ +C K+
Sbjct: 1126 PHEPEQNESIYDFLRSPEVRNFEK--DHMDTCRQSTENALRCRLACKSKDSATVQGGAMT 1183
Query: 917 QSKSFIRNFVTV-NDIQKLAFESRSILSRYSIDQVISDHDKITMLRVLHFHPRKNEKLGC 975
+ F+ V + ++I + +++L Y ++ + + DK ++ L FHP +K+G
Sbjct: 1184 IDQGFLHAKVGIWDNIIDMRTSLQNMLREYPLNGFVKETDKSQLVEALKFHPNGAQKIGV 1243
Query: 976 GPADIKVGWHPVHKDSRCFHIIRSDESVEDFSYRKCILRALEIVDP 1021
G +IK+G +P H +RCF ++R D + EDFSY KC+ A + P
Sbjct: 1244 GVREIKIGLNPSHPGTRCFILLRKDGTTEDFSYNKCVQGAANSISP 1289
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 49/82 (59%), Gaps = 12/82 (14%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
+I+LS ++LPI SVVSINPLCC P GDFDGDC++ ++L +D +++
Sbjct: 393 LIALSTKILPIQSVVSINPLCCMPFLGDFDGDCMNFSCD---------SKLHIIDSEVLT 443
Query: 61 GQSGRNLLSLSQDSLTAAYMLM 82
SG + L Q+S T + +M
Sbjct: 444 CSSGSSWL---QNSTTGLFSIM 462
>M0VV71_HORVD (tr|M0VV71) DNA-directed RNA polymerase OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 1045
Score = 504 bits (1298), Expect = e-140, Method: Compositional matrix adjust.
Identities = 275/626 (43%), Positives = 385/626 (61%), Gaps = 35/626 (5%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
+I LS ++LPI SV+SINPLCC+PL GDFDGDCLHGY+PQS+ +RVEL ELV+L QL+N
Sbjct: 442 LIGLSAKLLPIQSVLSINPLCCAPLAGDFDGDCLHGYVPQSIQSRVELGELVSLSHQLLN 501
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCDK-KLTPPPSIIKAPSRNNS 119
Q GR+L+SL+ DSL AAY+L VLL EIQQ QML TP P+I+K+ +
Sbjct: 502 AQDGRSLVSLTHDSLAAAYLLTSSEVLLKKTEIQQFQMLLHPLSPTPGPAIMKSIHSHGP 561
Query: 120 LWSGKQLFSMLLPSNFDYSFPPNGVSVSDGELTSSFESSGWLRDSECNIFQRLVERFQDK 179
LW+GKQLFSMLLPS+ +S + V + DGE+ + S WL++S +F + +++ D
Sbjct: 562 LWTGKQLFSMLLPSDMSFSI-ESKVHIIDGEVLACPSESFWLQNSISGLFSFMFKQYGDT 620
Query: 180 TLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGLQEAEQACDFNQL 239
L LL AQ VLCE+L+M G +R + + ++ L +AE+A Q+
Sbjct: 621 ALELLSSAQDVLCEFLTMRGLSVSLSDIYLFPDHDSRRKLADGVNLALDDAEEAFRIKQI 680
Query: 240 LVD----------HYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHMFR 289
L+ C LS S + SD + S + + + S+ AF+ +F
Sbjct: 681 LLSPDSIPILKCYDDCADLSQSYEQSDFIQS------------NLPIIKSSIMAFKSVFS 728
Query: 290 NIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCAAW 349
++Q +V ++ ++ N+ + M AGSKG++LK VQ + C+GLQ R +R+P ELSCA+W
Sbjct: 729 DLQKMVQQHTARNNSMMIMTNAGSKGSMLKFVQQTACVGLQLPASRFPFRIPSELSCASW 788
Query: 350 NSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNADLP 409
N K L Y AV+ +SF GLNPLEC HS++ R + FS+NAD+P
Sbjct: 789 NRHKSEGR----GECLGGQNLY---AVIRNSFAGGLNPLECLLHSISGRANFFSENADVP 841
Query: 410 GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTDKDSSCDSGFQEGTVGGEPVGAL 469
GTLTR+LM+ +RDLY AYDGTVR+ YG Q++QF+YDT +D D EG +G PVG+
Sbjct: 842 GTLTRKLMYHLRDLYVAYDGTVRSSYGQQIMQFTYDTAEDMCSDRNL-EGELGA-PVGSW 899
Query: 470 SACAISEAAYSALGQPISLLETSPLLNLKNVLECGSRKKSGDQTVSLFLSDKLGKQRYGF 529
+AC+ISEAAY AL P++ LE SPL+NL++VL+C S D LFLS L K RYG
Sbjct: 900 AACSISEAAYGALDHPVNSLEESPLMNLQDVLKCQKGGTSMDHVGLLFLSKNLKKYRYGL 959
Query: 530 EYAALEVKNYLERVMFSDIVSTVMIMFTPQSSSLEIFNPWVCHFHLDKEIVARRKLTVHS 589
EYA+LEVK+YLE V FSD+V TVM++ S+ +PW HFHL +E++ R++L +
Sbjct: 960 EYASLEVKDYLEPVNFSDLVDTVMVLHGGCQSTKG--SPWTTHFHLSQEMMTRKRLGLRL 1017
Query: 590 VIESLYRRYESLTKESKVTFPNLKIS 615
V+E L +Y + + P + IS
Sbjct: 1018 VVEELTEQYNAKRDKLNDVIPKVYIS 1043
>M0VV73_HORVD (tr|M0VV73) DNA-directed RNA polymerase OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 858
Score = 504 bits (1297), Expect = e-140, Method: Compositional matrix adjust.
Identities = 275/626 (43%), Positives = 385/626 (61%), Gaps = 35/626 (5%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
+I LS ++LPI SV+SINPLCC+PL GDFDGDCLHGY+PQS+ +RVEL ELV+L QL+N
Sbjct: 255 LIGLSAKLLPIQSVLSINPLCCAPLAGDFDGDCLHGYVPQSIQSRVELGELVSLSHQLLN 314
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCDK-KLTPPPSIIKAPSRNNS 119
Q GR+L+SL+ DSL AAY+L VLL EIQQ QML TP P+I+K+ +
Sbjct: 315 AQDGRSLVSLTHDSLAAAYLLTSSEVLLKKTEIQQFQMLLHPLSPTPGPAIMKSIHSHGP 374
Query: 120 LWSGKQLFSMLLPSNFDYSFPPNGVSVSDGELTSSFESSGWLRDSECNIFQRLVERFQDK 179
LW+GKQLFSMLLPS+ +S + V + DGE+ + S WL++S +F + +++ D
Sbjct: 375 LWTGKQLFSMLLPSDMSFSI-ESKVHIIDGEVLACPSESFWLQNSISGLFSFMFKQYGDT 433
Query: 180 TLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGLQEAEQACDFNQL 239
L LL AQ VLCE+L+M G +R + + ++ L +AE+A Q+
Sbjct: 434 ALELLSSAQDVLCEFLTMRGLSVSLSDIYLFPDHDSRRKLADGVNLALDDAEEAFRIKQI 493
Query: 240 LVD----------HYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHMFR 289
L+ C LS S + SD + S + + + S+ AF+ +F
Sbjct: 494 LLSPDSIPILKCYDDCADLSQSYEQSDFIQS------------NLPIIKSSIMAFKSVFS 541
Query: 290 NIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCAAW 349
++Q +V ++ ++ N+ + M AGSKG++LK VQ + C+GLQ R +R+P ELSCA+W
Sbjct: 542 DLQKMVQQHTARNNSMMIMTNAGSKGSMLKFVQQTACVGLQLPASRFPFRIPSELSCASW 601
Query: 350 NSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNADLP 409
N K L Y AV+ +SF GLNPLEC HS++ R + FS+NAD+P
Sbjct: 602 NRHKSEGR----GECLGGQNLY---AVIRNSFAGGLNPLECLLHSISGRANFFSENADVP 654
Query: 410 GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTDKDSSCDSGFQEGTVGGEPVGAL 469
GTLTR+LM+ +RDLY AYDGTVR+ YG Q++QF+YDT +D D EG +G PVG+
Sbjct: 655 GTLTRKLMYHLRDLYVAYDGTVRSSYGQQIMQFTYDTAEDMCSDRNL-EGELGA-PVGSW 712
Query: 470 SACAISEAAYSALGQPISLLETSPLLNLKNVLECGSRKKSGDQTVSLFLSDKLGKQRYGF 529
+AC+ISEAAY AL P++ LE SPL+NL++VL+C S D LFLS L K RYG
Sbjct: 713 AACSISEAAYGALDHPVNSLEESPLMNLQDVLKCQKGGTSMDHVGLLFLSKNLKKYRYGL 772
Query: 530 EYAALEVKNYLERVMFSDIVSTVMIMFTPQSSSLEIFNPWVCHFHLDKEIVARRKLTVHS 589
EYA+LEVK+YLE V FSD+V TVM++ S+ +PW HFHL +E++ R++L +
Sbjct: 773 EYASLEVKDYLEPVNFSDLVDTVMVLHGGCQSTKG--SPWTTHFHLSQEMMTRKRLGLRL 830
Query: 590 VIESLYRRYESLTKESKVTFPNLKIS 615
V+E L +Y + + P + IS
Sbjct: 831 VVEELTEQYNAKRDKLNDVIPKVYIS 856
>M0VV72_HORVD (tr|M0VV72) DNA-directed RNA polymerase OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 854
Score = 504 bits (1297), Expect = e-139, Method: Compositional matrix adjust.
Identities = 275/626 (43%), Positives = 385/626 (61%), Gaps = 35/626 (5%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
+I LS ++LPI SV+SINPLCC+PL GDFDGDCLHGY+PQS+ +RVEL ELV+L QL+N
Sbjct: 251 LIGLSAKLLPIQSVLSINPLCCAPLAGDFDGDCLHGYVPQSIQSRVELGELVSLSHQLLN 310
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCDK-KLTPPPSIIKAPSRNNS 119
Q GR+L+SL+ DSL AAY+L VLL EIQQ QML TP P+I+K+ +
Sbjct: 311 AQDGRSLVSLTHDSLAAAYLLTSSEVLLKKTEIQQFQMLLHPLSPTPGPAIMKSIHSHGP 370
Query: 120 LWSGKQLFSMLLPSNFDYSFPPNGVSVSDGELTSSFESSGWLRDSECNIFQRLVERFQDK 179
LW+GKQLFSMLLPS+ +S + V + DGE+ + S WL++S +F + +++ D
Sbjct: 371 LWTGKQLFSMLLPSDMSFSI-ESKVHIIDGEVLACPSESFWLQNSISGLFSFMFKQYGDT 429
Query: 180 TLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGLQEAEQACDFNQL 239
L LL AQ VLCE+L+M G +R + + ++ L +AE+A Q+
Sbjct: 430 ALELLSSAQDVLCEFLTMRGLSVSLSDIYLFPDHDSRRKLADGVNLALDDAEEAFRIKQI 489
Query: 240 LVD----------HYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHMFR 289
L+ C LS S + SD + S + + + S+ AF+ +F
Sbjct: 490 LLSPDSIPILKCYDDCADLSQSYEQSDFIQS------------NLPIIKSSIMAFKSVFS 537
Query: 290 NIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCAAW 349
++Q +V ++ ++ N+ + M AGSKG++LK VQ + C+GLQ R +R+P ELSCA+W
Sbjct: 538 DLQKMVQQHTARNNSMMIMTNAGSKGSMLKFVQQTACVGLQLPASRFPFRIPSELSCASW 597
Query: 350 NSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNADLP 409
N K L Y AV+ +SF GLNPLEC HS++ R + FS+NAD+P
Sbjct: 598 NRHKSEGR----GECLGGQNLY---AVIRNSFAGGLNPLECLLHSISGRANFFSENADVP 650
Query: 410 GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTDKDSSCDSGFQEGTVGGEPVGAL 469
GTLTR+LM+ +RDLY AYDGTVR+ YG Q++QF+YDT +D D EG +G PVG+
Sbjct: 651 GTLTRKLMYHLRDLYVAYDGTVRSSYGQQIMQFTYDTAEDMCSDRNL-EGELGA-PVGSW 708
Query: 470 SACAISEAAYSALGQPISLLETSPLLNLKNVLECGSRKKSGDQTVSLFLSDKLGKQRYGF 529
+AC+ISEAAY AL P++ LE SPL+NL++VL+C S D LFLS L K RYG
Sbjct: 709 AACSISEAAYGALDHPVNSLEESPLMNLQDVLKCQKGGTSMDHVGLLFLSKNLKKYRYGL 768
Query: 530 EYAALEVKNYLERVMFSDIVSTVMIMFTPQSSSLEIFNPWVCHFHLDKEIVARRKLTVHS 589
EYA+LEVK+YLE V FSD+V TVM++ S+ +PW HFHL +E++ R++L +
Sbjct: 769 EYASLEVKDYLEPVNFSDLVDTVMVLHGGCQSTKG--SPWTTHFHLSQEMMTRKRLGLRL 826
Query: 590 VIESLYRRYESLTKESKVTFPNLKIS 615
V+E L +Y + + P + IS
Sbjct: 827 VVEELTEQYNAKRDKLNDVIPKVYIS 852
>M0VV69_HORVD (tr|M0VV69) DNA-directed RNA polymerase OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 1056
Score = 504 bits (1297), Expect = e-139, Method: Compositional matrix adjust.
Identities = 275/626 (43%), Positives = 385/626 (61%), Gaps = 35/626 (5%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
+I LS ++LPI SV+SINPLCC+PL GDFDGDCLHGY+PQS+ +RVEL ELV+L QL+N
Sbjct: 442 LIGLSAKLLPIQSVLSINPLCCAPLAGDFDGDCLHGYVPQSIQSRVELGELVSLSHQLLN 501
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCDK-KLTPPPSIIKAPSRNNS 119
Q GR+L+SL+ DSL AAY+L VLL EIQQ QML TP P+I+K+ +
Sbjct: 502 AQDGRSLVSLTHDSLAAAYLLTSSEVLLKKTEIQQFQMLLHPLSPTPGPAIMKSIHSHGP 561
Query: 120 LWSGKQLFSMLLPSNFDYSFPPNGVSVSDGELTSSFESSGWLRDSECNIFQRLVERFQDK 179
LW+GKQLFSMLLPS+ +S + V + DGE+ + S WL++S +F + +++ D
Sbjct: 562 LWTGKQLFSMLLPSDMSFSI-ESKVHIIDGEVLACPSESFWLQNSISGLFSFMFKQYGDT 620
Query: 180 TLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGLQEAEQACDFNQL 239
L LL AQ VLCE+L+M G +R + + ++ L +AE+A Q+
Sbjct: 621 ALELLSSAQDVLCEFLTMRGLSVSLSDIYLFPDHDSRRKLADGVNLALDDAEEAFRIKQI 680
Query: 240 LVD----------HYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHMFR 289
L+ C LS S + SD + S + + + S+ AF+ +F
Sbjct: 681 LLSPDSIPILKCYDDCADLSQSYEQSDFIQS------------NLPIIKSSIMAFKSVFS 728
Query: 290 NIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCAAW 349
++Q +V ++ ++ N+ + M AGSKG++LK VQ + C+GLQ R +R+P ELSCA+W
Sbjct: 729 DLQKMVQQHTARNNSMMIMTNAGSKGSMLKFVQQTACVGLQLPASRFPFRIPSELSCASW 788
Query: 350 NSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNADLP 409
N K L Y AV+ +SF GLNPLEC HS++ R + FS+NAD+P
Sbjct: 789 NRHKSEGR----GECLGGQNLY---AVIRNSFAGGLNPLECLLHSISGRANFFSENADVP 841
Query: 410 GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTDKDSSCDSGFQEGTVGGEPVGAL 469
GTLTR+LM+ +RDLY AYDGTVR+ YG Q++QF+YDT +D D EG +G PVG+
Sbjct: 842 GTLTRKLMYHLRDLYVAYDGTVRSSYGQQIMQFTYDTAEDMCSDRNL-EGELGA-PVGSW 899
Query: 470 SACAISEAAYSALGQPISLLETSPLLNLKNVLECGSRKKSGDQTVSLFLSDKLGKQRYGF 529
+AC+ISEAAY AL P++ LE SPL+NL++VL+C S D LFLS L K RYG
Sbjct: 900 AACSISEAAYGALDHPVNSLEESPLMNLQDVLKCQKGGTSMDHVGLLFLSKNLKKYRYGL 959
Query: 530 EYAALEVKNYLERVMFSDIVSTVMIMFTPQSSSLEIFNPWVCHFHLDKEIVARRKLTVHS 589
EYA+LEVK+YLE V FSD+V TVM++ S+ +PW HFHL +E++ R++L +
Sbjct: 960 EYASLEVKDYLEPVNFSDLVDTVMVLHGGCQSTKG--SPWTTHFHLSQEMMTRKRLGLRL 1017
Query: 590 VIESLYRRYESLTKESKVTFPNLKIS 615
V+E L +Y + + P + IS
Sbjct: 1018 VVEELTEQYNAKRDKLNDVIPKVYIS 1043
>M0VV68_HORVD (tr|M0VV68) DNA-directed RNA polymerase OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 869
Score = 503 bits (1296), Expect = e-139, Method: Compositional matrix adjust.
Identities = 275/626 (43%), Positives = 385/626 (61%), Gaps = 35/626 (5%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
+I LS ++LPI SV+SINPLCC+PL GDFDGDCLHGY+PQS+ +RVEL ELV+L QL+N
Sbjct: 255 LIGLSAKLLPIQSVLSINPLCCAPLAGDFDGDCLHGYVPQSIQSRVELGELVSLSHQLLN 314
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCDK-KLTPPPSIIKAPSRNNS 119
Q GR+L+SL+ DSL AAY+L VLL EIQQ QML TP P+I+K+ +
Sbjct: 315 AQDGRSLVSLTHDSLAAAYLLTSSEVLLKKTEIQQFQMLLHPLSPTPGPAIMKSIHSHGP 374
Query: 120 LWSGKQLFSMLLPSNFDYSFPPNGVSVSDGELTSSFESSGWLRDSECNIFQRLVERFQDK 179
LW+GKQLFSMLLPS+ +S + V + DGE+ + S WL++S +F + +++ D
Sbjct: 375 LWTGKQLFSMLLPSDMSFSI-ESKVHIIDGEVLACPSESFWLQNSISGLFSFMFKQYGDT 433
Query: 180 TLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGLQEAEQACDFNQL 239
L LL AQ VLCE+L+M G +R + + ++ L +AE+A Q+
Sbjct: 434 ALELLSSAQDVLCEFLTMRGLSVSLSDIYLFPDHDSRRKLADGVNLALDDAEEAFRIKQI 493
Query: 240 LVD----------HYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHMFR 289
L+ C LS S + SD + S + + + S+ AF+ +F
Sbjct: 494 LLSPDSIPILKCYDDCADLSQSYEQSDFIQS------------NLPIIKSSIMAFKSVFS 541
Query: 290 NIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCAAW 349
++Q +V ++ ++ N+ + M AGSKG++LK VQ + C+GLQ R +R+P ELSCA+W
Sbjct: 542 DLQKMVQQHTARNNSMMIMTNAGSKGSMLKFVQQTACVGLQLPASRFPFRIPSELSCASW 601
Query: 350 NSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNADLP 409
N K L Y AV+ +SF GLNPLEC HS++ R + FS+NAD+P
Sbjct: 602 NRHKSEGR----GECLGGQNLY---AVIRNSFAGGLNPLECLLHSISGRANFFSENADVP 654
Query: 410 GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTDKDSSCDSGFQEGTVGGEPVGAL 469
GTLTR+LM+ +RDLY AYDGTVR+ YG Q++QF+YDT +D D EG +G PVG+
Sbjct: 655 GTLTRKLMYHLRDLYVAYDGTVRSSYGQQIMQFTYDTAEDMCSDRNL-EGELGA-PVGSW 712
Query: 470 SACAISEAAYSALGQPISLLETSPLLNLKNVLECGSRKKSGDQTVSLFLSDKLGKQRYGF 529
+AC+ISEAAY AL P++ LE SPL+NL++VL+C S D LFLS L K RYG
Sbjct: 713 AACSISEAAYGALDHPVNSLEESPLMNLQDVLKCQKGGTSMDHVGLLFLSKNLKKYRYGL 772
Query: 530 EYAALEVKNYLERVMFSDIVSTVMIMFTPQSSSLEIFNPWVCHFHLDKEIVARRKLTVHS 589
EYA+LEVK+YLE V FSD+V TVM++ S+ +PW HFHL +E++ R++L +
Sbjct: 773 EYASLEVKDYLEPVNFSDLVDTVMVLHGGCQSTKG--SPWTTHFHLSQEMMTRKRLGLRL 830
Query: 590 VIESLYRRYESLTKESKVTFPNLKIS 615
V+E L +Y + + P + IS
Sbjct: 831 VVEELTEQYNAKRDKLNDVIPKVYIS 856
>M0VV74_HORVD (tr|M0VV74) DNA-directed RNA polymerase OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 1025
Score = 487 bits (1253), Expect = e-134, Method: Compositional matrix adjust.
Identities = 266/593 (44%), Positives = 367/593 (61%), Gaps = 35/593 (5%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
+I LS ++LPI SV+SINPLCC+PL GDFDGDCLHGY+PQS+ +RVEL ELV+L QL+N
Sbjct: 442 LIGLSAKLLPIQSVLSINPLCCAPLAGDFDGDCLHGYVPQSIQSRVELGELVSLSHQLLN 501
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCDK-KLTPPPSIIKAPSRNNS 119
Q GR+L+SL+ DSL AAY+L VLL EIQQ QML TP P+I+K+ +
Sbjct: 502 AQDGRSLVSLTHDSLAAAYLLTSSEVLLKKTEIQQFQMLLHPLSPTPGPAIMKSIHSHGP 561
Query: 120 LWSGKQLFSMLLPSNFDYSFPPNGVSVSDGELTSSFESSGWLRDSECNIFQRLVERFQDK 179
LW+GKQLFSMLLPS+ +S + V + DGE+ + S WL++S +F + +++ D
Sbjct: 562 LWTGKQLFSMLLPSDMSFSI-ESKVHIIDGEVLACPSESFWLQNSISGLFSFMFKQYGDT 620
Query: 180 TLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGLQEAEQACDFNQL 239
L LL AQ VLCE+L+M G +R + + ++ L +AE+A Q+
Sbjct: 621 ALELLSSAQDVLCEFLTMRGLSVSLSDIYLFPDHDSRRKLADGVNLALDDAEEAFRIKQI 680
Query: 240 LVD----------HYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHMFR 289
L+ C LS S + SD + S + + + S+ AF+ +F
Sbjct: 681 LLSPDSIPILKCYDDCADLSQSYEQSDFIQS------------NLPIIKSSIMAFKSVFS 728
Query: 290 NIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCAAW 349
++Q +V ++ ++ N+ + M AGSKG++LK VQ + C+GLQ R +R+P ELSCA+W
Sbjct: 729 DLQKMVQQHTARNNSMMIMTNAGSKGSMLKFVQQTACVGLQLPASRFPFRIPSELSCASW 788
Query: 350 NSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNADLP 409
N K L Y AV+ +SF GLNPLEC HS++ R + FS+NAD+P
Sbjct: 789 NRHKSEGR----GECLGGQNLY---AVIRNSFAGGLNPLECLLHSISGRANFFSENADVP 841
Query: 410 GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTDKDSSCDSGFQEGTVGGEPVGAL 469
GTLTR+LM+ +RDLY AYDGTVR+ YG Q++QF+YDT +D D EG +G PVG+
Sbjct: 842 GTLTRKLMYHLRDLYVAYDGTVRSSYGQQIMQFTYDTAEDMCSDRNL-EGELGA-PVGSW 899
Query: 470 SACAISEAAYSALGQPISLLETSPLLNLKNVLECGSRKKSGDQTVSLFLSDKLGKQRYGF 529
+AC+ISEAAY AL P++ LE SPL+NL++VL+C S D LFLS L K RYG
Sbjct: 900 AACSISEAAYGALDHPVNSLEESPLMNLQDVLKCQKGGTSMDHVGLLFLSKNLKKYRYGL 959
Query: 530 EYAALEVKNYLERVMFSDIVSTVMIMFTPQSSSLEIFNPWVCHFHLDKEIVAR 582
EYA+LEVK+YLE V FSD+V TVM++ S+ +PW HFHL + + R
Sbjct: 960 EYASLEVKDYLEPVNFSDLVDTVMVLHGGCQSTKG--SPWTTHFHLSQVLFFR 1010
>M0VV70_HORVD (tr|M0VV70) DNA-directed RNA polymerase OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 682
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 265/588 (45%), Positives = 365/588 (62%), Gaps = 35/588 (5%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
+I LS ++LPI SV+SINPLCC+PL GDFDGDCLHGY+PQS+ +RVEL ELV+L QL+N
Sbjct: 116 LIGLSAKLLPIQSVLSINPLCCAPLAGDFDGDCLHGYVPQSIQSRVELGELVSLSHQLLN 175
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCDK-KLTPPPSIIKAPSRNNS 119
Q GR+L+SL+ DSL AAY+L VLL EIQQ QML TP P+I+K+ +
Sbjct: 176 AQDGRSLVSLTHDSLAAAYLLTSSEVLLKKTEIQQFQMLLHPLSPTPGPAIMKSIHSHGP 235
Query: 120 LWSGKQLFSMLLPSNFDYSFPPNGVSVSDGELTSSFESSGWLRDSECNIFQRLVERFQDK 179
LW+GKQLFSMLLPS+ +S + V + DGE+ + S WL++S +F + +++ D
Sbjct: 236 LWTGKQLFSMLLPSDMSFSI-ESKVHIIDGEVLACPSESFWLQNSISGLFSFMFKQYGDT 294
Query: 180 TLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGLQEAEQACDFNQL 239
L LL AQ VLCE+L+M G +R + + ++ L +AE+A Q+
Sbjct: 295 ALELLSSAQDVLCEFLTMRGLSVSLSDIYLFPDHDSRRKLADGVNLALDDAEEAFRIKQI 354
Query: 240 LVD----------HYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHMFR 289
L+ C LS S + SD + S + + + S+ AF+ +F
Sbjct: 355 LLSPDSIPILKCYDDCADLSQSYEQSDFIQS------------NLPIIKSSIMAFKSVFS 402
Query: 290 NIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCAAW 349
++Q +V ++ ++ N+ + M AGSKG++LK VQ + C+GLQ R +R+P ELSCA+W
Sbjct: 403 DLQKMVQQHTARNNSMMIMTNAGSKGSMLKFVQQTACVGLQLPASRFPFRIPSELSCASW 462
Query: 350 NSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNADLP 409
N K L Y AV+ +SF GLNPLEC HS++ R + FS+NAD+P
Sbjct: 463 NRHKSEGR----GECLGGQNLY---AVIRNSFAGGLNPLECLLHSISGRANFFSENADVP 515
Query: 410 GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTDKDSSCDSGFQEGTVGGEPVGAL 469
GTLTR+LM+ +RDLY AYDGTVR+ YG Q++QF+YDT +D D EG +G PVG+
Sbjct: 516 GTLTRKLMYHLRDLYVAYDGTVRSSYGQQIMQFTYDTAEDMCSDRNL-EGELGA-PVGSW 573
Query: 470 SACAISEAAYSALGQPISLLETSPLLNLKNVLECGSRKKSGDQTVSLFLSDKLGKQRYGF 529
+AC+ISEAAY AL P++ LE SPL+NL++VL+C S D LFLS L K RYG
Sbjct: 574 AACSISEAAYGALDHPVNSLEESPLMNLQDVLKCQKGGTSMDHVGLLFLSKNLKKYRYGL 633
Query: 530 EYAALEVKNYLERVMFSDIVSTVMIMFTPQSSSLEIFNPWVCHFHLDK 577
EYA+LEVK+YLE V FSD+V TVM++ S+ +PW HFHL +
Sbjct: 634 EYASLEVKDYLEPVNFSDLVDTVMVLHGGCQSTKG--SPWTTHFHLSQ 679
>C5YE51_SORBI (tr|C5YE51) DNA-directed RNA polymerase OS=Sorghum bicolor
GN=Sb06g025933 PE=3 SV=1
Length = 1203
Score = 477 bits (1227), Expect = e-131, Method: Compositional matrix adjust.
Identities = 291/885 (32%), Positives = 453/885 (51%), Gaps = 122/885 (13%)
Query: 146 VSDGELTSSFESSGWLRDSECNIFQRLVERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXX 205
+ +GE+ + S WL+++ +F + +++ K L+ L AQ+VLCE+L+M G
Sbjct: 419 ILNGEVLTCSLGSSWLQNNTSGLFSVMFKQYGCKALDFLSSAQEVLCEFLTMRGLSVSLS 478
Query: 206 XXXXXXXXCARENMMEEISYGLQEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDS 265
+R + E + L EAE+A Q+L+D + ++++V D
Sbjct: 479 DMFSDHY--SRRKLTEGVKLALDEAEEAFRIKQILLDPINIPVLKCQDETEDVTYRQSDC 536
Query: 266 LNYEKHISAALSEVSVDAFRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSM 325
+ + + S+ AF+ +F ++ +V ++ S N+ + M AGSKG++LK Q +
Sbjct: 537 IQNNPSVIRS----SIMAFKDVFSDLLKMVQQHVSNDNSMMVMINAGSKGSMLKYAQQTA 592
Query: 326 CLGLQHSLVRLSYRMPRELSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGL 385
C+GLQ + +R+P +LSC WN +K LN +N Q +AV+ +SF+ GL
Sbjct: 593 CVGLQLPASKFPFRVPSQLSCIRWNRQKSLNYEAEGTNERVGGQNL--YAVIRNSFIEGL 650
Query: 386 NPLECFAHSVANRDSSFSDNADLPGTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYD 445
NPLEC H+++ R + FS+NAD+PGTLTR+LM+ +RD++ AYDGTVR+ YG Q++QFSYD
Sbjct: 651 NPLECLLHAISGRANFFSENADVPGTLTRKLMYHLRDIHVAYDGTVRSSYGQQIVQFSYD 710
Query: 446 TDKDSSCDSGFQEGTVGGEPVGALSACAISEAAYSALGQPISLLETSPLLNLKNVLECGS 505
+ D V +C
Sbjct: 711 SADDPE------------------------------------------------VFKCHK 722
Query: 506 RKKSGDQTVSLFLSDKLGKQRYGFEYAALEVKNYLERVMFSDIVSTVMIMFTPQSSSLEI 565
SGD LFLS L K RYG EYA+LEVKN
Sbjct: 723 ATNSGDHIGLLFLSRHLKKYRYGLEYASLEVKN--------------------------- 755
Query: 566 FNPWVCHFHLDKEIVARRKLTVHSVIESLYRRYESLTKESKVTFPNLKISSNRKC--SKE 623
HL++E++ +++L + VIE L + Y + + K P++ IS RKC E
Sbjct: 756 --------HLEQEMMKKKRLGLRFVIEELTKEYNATRDQLKNAIPSICIS-RRKCVVGDE 806
Query: 624 GGYASLNKEKEDVDCISVTIVESSRSSAKLEAVRDLMIPFLLGTVIKGFLEIKKVDILWS 683
G K CI+V + S ++L+ ++ +IP +L T++KGFLE K V+I
Sbjct: 807 G-------VKISACCIAVVALAEPNSMSQLDTIKKRVIPIILDTLLKGFLEFKDVEIQCQ 859
Query: 684 NRSKVSNSYAGSSGELYLRVTMSSDGDSGRFWGVLINHCHRIMPMIDWTRSHPDNIHHFC 743
+ GEL ++V MS GRFW L N C +M +IDW S P N+
Sbjct: 860 H-----------DGELLVKVCMSHHCKGGRFWATLQNACIPVMELIDWELSRPSNVADIF 908
Query: 744 SAYGIDAGRQYFLHSLASATTETGKSILPKHLHLVANSLSASGEFVGLNAKGIGRQRKHA 803
+YGID+ +YF+ SL SATT+ G++I +HL ++A+S+S +G+F +++ G+ +QR
Sbjct: 909 CSYGIDSAWKYFVESLKSATTDIGRNIRREHLLVIADSMSVTGQFHAISSHGLKQQRTRL 968
Query: 804 SVSSPFVQACFSNPGTSFIKAAKSGVLDDLQGCLDALAWGKCMSMGTSGQFDIMHSEKVE 863
S+SSPF +ACFS P SFI AAK +D+L G LDA+AWGK GTSG F+IMHS K
Sbjct: 969 SISSPFSEACFSRPAQSFIDAAKQCSVDNLCGSLDAIAWGKEPFNGTSGPFEIMHSGKPH 1028
Query: 864 EFPESADVYSLLIANFDQLNDKVDIPHYHNRSSN------KCDSEFSRKNGGYALKEYKQ 917
E + +Y L + Q +K + + N C S+ S G A+
Sbjct: 1029 EPEQDESIYDFLRSPKVQNVEKNHLDTRRQSTENASICRLACKSKGSATVNGVAI---TS 1085
Query: 918 SKSFIRNFVTV-NDIQKLAFESRSILSRYSIDQVISDHDKITMLRVLHFHPRKNEKLGCG 976
+ F+ V++ ++I + +++L Y ++ + + DK ++ L FHPR EK+G G
Sbjct: 1086 DQDFLHAKVSIWDNIIDMRASLQNMLREYPLNGYVMEPDKSKLIEALKFHPRGAEKIGVG 1145
Query: 977 PADIKVGWHPVHKDSRCFHIIRSDESVEDFSYRKCILRALEIVDP 1021
+IKVG +P H +RCF ++R+D++ EDFSY KC+ A + P
Sbjct: 1146 VREIKVGLNPNHPGTRCFILLRNDDTTEDFSYHKCVHGAANSISP 1190
>I1HLK0_BRADI (tr|I1HLK0) Uncharacterized protein OS=Brachypodium distachyon
GN=BRADI2G34877 PE=4 SV=1
Length = 609
Score = 421 bits (1081), Expect = e-114, Method: Compositional matrix adjust.
Identities = 241/618 (38%), Positives = 361/618 (58%), Gaps = 43/618 (6%)
Query: 417 MFFMRDLYQAYDGTVRNLYGNQLIQFSYDTDKDSSCDSGFQEGTVGGEPVGALSACAISE 476
M+ +RD+Y AYDGTVR+ YG Q++QF+YDT +D D G QEG G PVG+ +AC+ISE
Sbjct: 1 MYHLRDIYVAYDGTVRSSYGQQIVQFTYDTAEDIYTDCG-QEGEFGA-PVGSWAACSISE 58
Query: 477 AAYSALGQPISLLETSPLLNLKNVLECGSRKKSGDQTVSLFLSDKLGKQRYGFEYAALEV 536
AAY AL P++++E SPL+NL+ VL+C S D LFLS L K RYGFEYA+L V
Sbjct: 59 AAYGALDHPVNVIEDSPLMNLQEVLKCQKGTNSLDHFGLLFLSKNLKKYRYGFEYASLYV 118
Query: 537 KNYLERVMFSDIVSTVMIMFTPQSSSLEIFNPWVCHFHLDKEIVARRKLTVHSVIESLYR 596
+NYLE + FS++V+TVMI + +PW+ HFH+ KE++ R++L + ++E L
Sbjct: 119 QNYLEPMDFSELVNTVMIQYDGGGVQKTKGSPWITHFHISKEMMKRKRLGLRLLVEDLTE 178
Query: 597 RYESLTKESKVTFPNLKISSNRKCSKEGGYASLNKEKEDVDCIS-----VTIV----ESS 647
Y + + P + IS KCS +D DCI+ +T+V +S
Sbjct: 179 HYNAKRDQLNNVIPKVYISKC-KCS------------DDDDCINNQTCCITVVAQDESNS 225
Query: 648 RSSAKLEAVRDLMIPFLLGTVIKGFLEIKKVDILWSNRSKVSNSYAGSSGELYLRVTMSS 707
S+++L+ ++ IP LL T +KGFLE K V+I EL ++V MS
Sbjct: 226 TSTSQLDDLKKRAIPVLLATPVKGFLEFKDVEI-----------QCQRDNELVVKVNMSK 274
Query: 708 DGDSGRFWGVLINHCHRIMPMIDWTRSHPDNIHHFCSAYGIDAGRQYFLHSLASATTETG 767
SG FW L C IM +IDW RS P +++ GID+ +YF+ SL S T + G
Sbjct: 275 HCKSGIFWTTLKKACIGIMGLIDWERSRPGSVYDIFCPCGIDSAWKYFVESLRSKTDDIG 334
Query: 768 KSILPKHLHLVANSLSASGEFVGLNAKGIGRQRKHASVSSPFVQACFSNPGTSFIKAAKS 827
++I +HL +VA++LS SG+F GL+++G+ +QR S SSPF +ACFS P +FIKAAK
Sbjct: 335 RNIHREHLLVVADTLSVSGQFHGLSSQGLKQQRTQLSTSSPFSEACFSRPADTFIKAAKQ 394
Query: 828 GVLDDLQGCLDALAWGKCMSMGTSGQFDIMHSEKVEEFPESADVYSLL----IANFDQLN 883
+D+L G +DALAWGK GTSG F IM++ K E ++ ++Y L + ++ +
Sbjct: 395 CSVDNLCGNIDALAWGKEPPAGTSGPFKIMYAGKPHEPVQNENIYGFLHNPEVWGPEKNH 454
Query: 884 DKVDIPHYHNRSSNKCDSEFSRKNGGYALKEYKQSKSFIRNFVTVNDIQKLAFESRSILS 943
+ D N +S + S + NGG E + + + ++ D++ +++L
Sbjct: 455 METDSTRTKN-ASERWSSGNATFNGGTISVEQNYLGAKVGVWDSIIDMRTCL---QNMLR 510
Query: 944 RYSIDQVISDHDKITMLRVLHFHPRKNEKLGCGPADIKVGWHPVHKDSRCFHIIRSDESV 1003
Y +D+ + + DK ++ L FHPR EK+G G DIK+G HP H +RCF ++R+D++
Sbjct: 511 EYQLDEYVVELDKSRVIEALRFHPRGREKIGVGIRDIKIGQHPSHPGTRCFILVRNDDTT 570
Query: 1004 EDFSYRKCILRALEIVDP 1021
ED SY+KC+ A + + P
Sbjct: 571 EDVSYKKCVQGAADSISP 588
>M0VV76_HORVD (tr|M0VV76) DNA-directed RNA polymerase OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 927
Score = 416 bits (1070), Expect = e-113, Method: Compositional matrix adjust.
Identities = 226/508 (44%), Positives = 315/508 (62%), Gaps = 33/508 (6%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
+I LS ++LPI SV+SINPLCC+PL GDFDGDCLHGY+PQS+ +RVEL ELV+L QL+N
Sbjct: 442 LIGLSAKLLPIQSVLSINPLCCAPLAGDFDGDCLHGYVPQSIQSRVELGELVSLSHQLLN 501
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCDK-KLTPPPSIIKAPSRNNS 119
Q GR+L+SL+ DSL AAY+L VLL EIQQ QML TP P+I+K+ +
Sbjct: 502 AQDGRSLVSLTHDSLAAAYLLTSSEVLLKKTEIQQFQMLLHPLSPTPGPAIMKSIHSHGP 561
Query: 120 LWSGKQLFSMLLPSNFDYSFPPNGVSVSDGELTSSFESSGWLRDSECNIFQRLVERFQDK 179
LW+GKQLFSMLLPS+ +S + V + DGE+ + S WL++S +F + +++ D
Sbjct: 562 LWTGKQLFSMLLPSDMSFSI-ESKVHIIDGEVLACPSESFWLQNSISGLFSFMFKQYGDT 620
Query: 180 TLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGLQEAEQACDFNQL 239
L LL AQ VLCE+L+M G +R + + ++ L +AE+A Q+
Sbjct: 621 ALELLSSAQDVLCEFLTMRGLSVSLSDIYLFPDHDSRRKLADGVNLALDDAEEAFRIKQI 680
Query: 240 LVD----------HYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHMFR 289
L+ C LS S + SD + S + + + S+ AF+ +F
Sbjct: 681 LLSPDSIPILKCYDDCADLSQSYEQSDFIQS------------NLPIIKSSIMAFKSVFS 728
Query: 290 NIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCAAW 349
++Q +V ++ ++ N+ + M AGSKG++LK VQ + C+GLQ R +R+P ELSCA+W
Sbjct: 729 DLQKMVQQHTARNNSMMIMTNAGSKGSMLKFVQQTACVGLQLPASRFPFRIPSELSCASW 788
Query: 350 NSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNADLP 409
N K L Y AV+ +SF GLNPLEC HS++ R + FS+NAD+P
Sbjct: 789 NRHKSEGR----GECLGGQNLY---AVIRNSFAGGLNPLECLLHSISGRANFFSENADVP 841
Query: 410 GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTDKDSSCDSGFQEGTVGGEPVGAL 469
GTLTR+LM+ +RDLY AYDGTVR+ YG Q++QF+YDT +D D EG +G PVG+
Sbjct: 842 GTLTRKLMYHLRDLYVAYDGTVRSSYGQQIMQFTYDTAEDMCSDRNL-EGELGA-PVGSW 899
Query: 470 SACAISEAAYSALGQPISLLETSPLLNL 497
+AC+ISEAAY AL P++ LE SPL+NL
Sbjct: 900 AACSISEAAYGALDHPVNSLEESPLMNL 927
>M0VV75_HORVD (tr|M0VV75) DNA-directed RNA polymerase OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 741
Score = 416 bits (1069), Expect = e-113, Method: Compositional matrix adjust.
Identities = 226/508 (44%), Positives = 315/508 (62%), Gaps = 33/508 (6%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
+I LS ++LPI SV+SINPLCC+PL GDFDGDCLHGY+PQS+ +RVEL ELV+L QL+N
Sbjct: 256 LIGLSAKLLPIQSVLSINPLCCAPLAGDFDGDCLHGYVPQSIQSRVELGELVSLSHQLLN 315
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCDK-KLTPPPSIIKAPSRNNS 119
Q GR+L+SL+ DSL AAY+L VLL EIQQ QML TP P+I+K+ +
Sbjct: 316 AQDGRSLVSLTHDSLAAAYLLTSSEVLLKKTEIQQFQMLLHPLSPTPGPAIMKSIHSHGP 375
Query: 120 LWSGKQLFSMLLPSNFDYSFPPNGVSVSDGELTSSFESSGWLRDSECNIFQRLVERFQDK 179
LW+GKQLFSMLLPS+ +S + V + DGE+ + S WL++S +F + +++ D
Sbjct: 376 LWTGKQLFSMLLPSDMSFSI-ESKVHIIDGEVLACPSESFWLQNSISGLFSFMFKQYGDT 434
Query: 180 TLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGLQEAEQACDFNQL 239
L LL AQ VLCE+L+M G +R + + ++ L +AE+A Q+
Sbjct: 435 ALELLSSAQDVLCEFLTMRGLSVSLSDIYLFPDHDSRRKLADGVNLALDDAEEAFRIKQI 494
Query: 240 LVD----------HYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHMFR 289
L+ C LS S + SD + S + + + S+ AF+ +F
Sbjct: 495 LLSPDSIPILKCYDDCADLSQSYEQSDFIQS------------NLPIIKSSIMAFKSVFS 542
Query: 290 NIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCAAW 349
++Q +V ++ ++ N+ + M AGSKG++LK VQ + C+GLQ R +R+P ELSCA+W
Sbjct: 543 DLQKMVQQHTARNNSMMIMTNAGSKGSMLKFVQQTACVGLQLPASRFPFRIPSELSCASW 602
Query: 350 NSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNADLP 409
N K L Y AV+ +SF GLNPLEC HS++ R + FS+NAD+P
Sbjct: 603 NRHKSEGR----GECLGGQNLY---AVIRNSFAGGLNPLECLLHSISGRANFFSENADVP 655
Query: 410 GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTDKDSSCDSGFQEGTVGGEPVGAL 469
GTLTR+LM+ +RDLY AYDGTVR+ YG Q++QF+YDT +D D EG +G PVG+
Sbjct: 656 GTLTRKLMYHLRDLYVAYDGTVRSSYGQQIMQFTYDTAEDMCSDRNL-EGELGA-PVGSW 713
Query: 470 SACAISEAAYSALGQPISLLETSPLLNL 497
+AC+ISEAAY AL P++ LE SPL+NL
Sbjct: 714 AACSISEAAYGALDHPVNSLEESPLMNL 741
>I1PP12_ORYGL (tr|I1PP12) Uncharacterized protein OS=Oryza glaberrima PE=4 SV=1
Length = 577
Score = 390 bits (1001), Expect = e-105, Method: Compositional matrix adjust.
Identities = 217/565 (38%), Positives = 328/565 (58%), Gaps = 25/565 (4%)
Query: 463 GEPVGALSACAISEAAYSALGQPISLLETSPLLNLKNVLECGSRKKSGDQTVSLFLSDKL 522
G PVG+ +AC+ISEAAY AL P++ LE SPL+NL+ VL+C S D T LFLS L
Sbjct: 12 GAPVGSWAACSISEAAYGALDHPVNSLEDSPLMNLQEVLKCHKGTNSLDHTGLLFLSKHL 71
Query: 523 GKQRYGFEYAALEVKNYLERVMFSDIVSTVMIMFTPQSSSLEIFNPWVCHFHLDKEIVAR 582
K RYGFEYA+LEVK++LERV FSD+V TV+I++ NPW+ HFHL +E +
Sbjct: 72 RKYRYGFEYASLEVKDHLERVDFSDMVDTVIILYGGSDMQKTKGNPWITHFHLSQETMKI 131
Query: 583 RKLTVHSVIESLYRRYESLTKESKVTFPNLKISSNRKCSKEGGYASLNKEKEDVDCISVT 642
++L + ++ + +Y +L K+ P++ IS N KCS K C+++
Sbjct: 132 KRLGLEFIVREIIDQYNTLRKQLNNAIPSVSIS-NSKCSVGNECV-----KNQTCCVTMV 185
Query: 643 IVESSRSSAKLEAVRDLMIPFLLGTVIKGFLEIKKVDILWSNRSKVSNSYAGSSGELYLR 702
+ S ++L+ +++ +IP +L T++KGFLE K V + EL L+
Sbjct: 186 VQVEINSMSQLDVIKERVIPSILATLLKGFLEFKNVKV-----------QCQEDNELVLK 234
Query: 703 VTMSSDGDSGRFWGVLINHCHRIMPMIDWTRSHPDNIH-HFCSAYGIDAGRQYFLHSLAS 761
V MS SG+FW L N C IM +IDW RS P+ ++ +FCS YGID+ ++F+ SL
Sbjct: 235 VGMSEHCKSGKFWATLQNACIPIMELIDWERSRPERVYDNFCS-YGIDSAWKFFVESLRY 293
Query: 762 ATTETGKSILPKHLHLVANSLSASGEFVGLNAKGIGRQRKHASVSSPFVQACFSNPGTSF 821
T G++I +HL +VA+ LS SG+F GL+++G+ +QR S+SSPF +ACFS P SF
Sbjct: 294 TTDAIGRNIHRQHLLVVADCLSVSGQFHGLSSQGLKQQRTWLSISSPFSEACFSRPAHSF 353
Query: 822 IKAAKSGVLDDLQGCLDALAWGKCMSMGTSGQFDIMHSEKVEEFPESADVYSLLIANFDQ 881
I AAK +D+L G LDA+AWGK G+SG F I++S K E ++ +Y L Q
Sbjct: 354 INAAKRDSVDNLSGTLDAIAWGKEPCTGSSGPFKILYSGKSHETKQNEHIYDFLHNPEVQ 413
Query: 882 LNDKVDIPHYHNRSSNKCDSEFSRKNGGYALKEYKQSKSFIRNFVTVN-----DIQKLAF 936
+K + Y R+ + + G A + SF + F+ +I +
Sbjct: 414 ALEKNVMDTYRKRTEKTSKRRSALNSEGNATIN-GGAISFNQKFLNAKVGIWENIIDMRT 472
Query: 937 ESRSILSRYSIDQVISDHDKITMLRVLHFHPRKNEKLGCGPADIKVGWHPVHKDSRCFHI 996
+++L Y++++V+++ DK ++ L FHPR +K+G G +IK+G +P H SRCF +
Sbjct: 473 SLQNMLREYTLNEVVTEQDKSCLIEALKFHPRGYDKIGVGIREIKIGVNPGHPSSRCFIV 532
Query: 997 IRSDESVEDFSYRKCILRALEIVDP 1021
+R+D++ DFSY KC+L A + P
Sbjct: 533 LRNDDTTADFSYNKCVLGAANSISP 557
>C0JR66_MAIZE (tr|C0JR66) DNA-directed RNA polymerase OS=Zea mays PE=2 SV=1
Length = 871
Score = 363 bits (933), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 185/440 (42%), Positives = 279/440 (63%), Gaps = 7/440 (1%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
+I+LS ++LPI SVVSINPLCC+P GDFDGDCLHGYIPQS+ +RVEL ELV+L QL+N
Sbjct: 439 LIALSAKILPIHSVVSINPLCCTPFAGDFDGDCLHGYIPQSIRSRVELEELVSLHNQLLN 498
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCDKKLTPPPSIIKAPSRNNSL 120
Q GRNL+SL+ DSL AA++L V L E+QQLQMLC TP P++IK+ + SL
Sbjct: 499 MQDGRNLVSLTHDSLAAAHLLTSTDVFLKKSELQQLQMLCLSVSTPAPAVIKSMNFQGSL 558
Query: 121 WSGKQLFSMLLPSNFDYSFPPNGVSVSDGELTSSFESSGWLRDSECNIFQRLVERFQDKT 180
W+GKQLFSMLLPS ++S + + D E+ + S WL+++ +F + +++ K
Sbjct: 559 WTGKQLFSMLLPSGMNFSCDTE-LHIMDSEVLTCSLGSSWLQNNTSGLFSVMFKQYGCKA 617
Query: 181 LNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGLQEAEQACDFNQLL 240
L+ L AQ+VLCE+L+M G +R + E + L EAE+A ++L
Sbjct: 618 LDFLSSAQEVLCEFLTMRGLSVSLSDLYMFSDHYSRRKLAEGVKLALYEAEEAFRVKKIL 677
Query: 241 VDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHMFRNIQSLVDKYAS 300
+D + ++++V D + + + S+ AF+ +FR++ +V ++ S
Sbjct: 678 LDPINIPVLKCHDETEDVTYRQSDCIQSNPSVIRS----SIMAFKDVFRDLLKMVQQHVS 733
Query: 301 KGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCAAWNSEKGLNSMPM 360
N+ + M AGSKG++LK Q + C+GLQ + +R+P +LSC +WN +K LN
Sbjct: 734 NDNSMMVMINAGSKGSMLKYAQQTACIGLQLPASKFPFRIPSQLSCISWNGQKSLNYEA- 792
Query: 361 FSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNADLPGTLTRRLMFFM 420
+T + + +AV+++SF+ GLNPLEC H+++ R + FS+NAD+PGTLTR+LM+ +
Sbjct: 793 -ESTSERVGGQNLYAVIKNSFIEGLNPLECLLHAISGRANFFSENADVPGTLTRKLMYHL 851
Query: 421 RDLYQAYDGTVRNLYGNQLI 440
RD++ AYDGTVR+ YG Q++
Sbjct: 852 RDIHVAYDGTVRSSYGQQIV 871
>M4FIT1_BRARP (tr|M4FIT1) Uncharacterized protein OS=Brassica rapa subsp.
pekinensis GN=Bra041010 PE=4 SV=1
Length = 478
Score = 362 bits (928), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 197/475 (41%), Positives = 283/475 (59%), Gaps = 23/475 (4%)
Query: 569 WVCHFHLDKEIVARRKLTVHSVIESLYRRYESLTKESKVTFPNLKISSNRKCSKEGGYAS 628
WVCHFH+ K+++ +++L V SV+ SL ++Y + KE K+ +L+I S CS +
Sbjct: 6 WVCHFHISKKVLKQKQLDVESVVSSLNKQYANRKKELKLDVIDLEIQSTNHCSWDD---- 61
Query: 629 LNKEKEDVDCISVTIVE-SSRSSAKLEAVRDLMIPFLLGTVIKGFLEIKKVDILWSNRSK 687
++D CI+VT++E S+ S +L+A+R ++IPFLL + +KG+ EIKKV+ILW++R K
Sbjct: 62 -KSMEDDRFCITVTVLEASTHGSLELDAIRLVLIPFLLDSPVKGYGEIKKVEILWADRPK 120
Query: 688 VSN-SYAGSSGELYLRVTMSSDGDSGRFWGVLINHCHRIMPMIDWTRSHPDNIHHFCSAY 746
+ +GEL+++VTM W L+ C IM MIDWTRSHPDNI CS Y
Sbjct: 121 APKRNKKHMAGELFVKVTMHGVRGKKNIWSALLETCLPIMDMIDWTRSHPDNIRQCCSVY 180
Query: 747 GIDAGRQYFLHSLASATTETGKSILPKHLHLVANSLSASGEFVGLNAKGIGRQRKHASVS 806
GIDAGR FL L SA +TGK +L +HL LVA+ LS +GEFV LN KG +QR+ S
Sbjct: 181 GIDAGRSIFLADLESAVADTGKGMLREHLLLVADCLSVTGEFVALNPKGWSKQRQAESTP 240
Query: 807 SPFVQACFSNPGTSFIKAAKSGVLDDLQGCLDALAWGKCMSMGTSGQFDIMHSEKVEEFP 866
+PF QACFS+P F+KAAK GV D+LQG +DALAWGK S GT QF+I+ S K F
Sbjct: 241 APFTQACFSSPSQCFLKAAKEGVTDELQGSIDALAWGKVPSFGTGDQFEIIISPKDHGFS 300
Query: 867 ESADVYSLLIANFDQLNDKVDIPHYHNRSSNKCDS---------EFSRKNGGYALKEYKQ 917
+ + +D L+ +P S K D+ + + L
Sbjct: 301 STP------VKVYDFLSSTATLPKRKASSLPKSDNFTVQPFPLLDTALSKAVKTLDGKGL 354
Query: 918 SKSFIRNFVTVNDIQKLAFESRSILSRYSIDQVISDHDKITMLRVLHFHPRKNEKLGCGP 977
++S +R T +DI+KL+ + IL Y ID +++ D+ ++ L FHP ++EKLG G
Sbjct: 355 TRSQLRTIFTWDDIEKLSRSLKRILYNYEIDATLNERDERLLMMALLFHPNRDEKLGPGF 414
Query: 978 ADIKVGWHPVHKDSRCFHIIRSDESVEDFSYRKCILRALEIVDPGKFRIQKKKWL 1032
IKV + H ++RCF ++R+D + EDFSY KC+L A EI+ P + K K+L
Sbjct: 415 QGIKVA-NSKHGNARCFEVVRTDGTTEDFSYHKCVLGATEIIAPKRVNFYKAKYL 468
>D8RLP4_SELML (tr|D8RLP4) DNA-directed RNA polymerase OS=Selaginella moellendorffii
GN=SELMODRAFT_441655 PE=3 SV=1
Length = 1438
Score = 329 bits (843), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 298/1058 (28%), Positives = 477/1058 (45%), Gaps = 149/1058 (14%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
+I L +V+ ++V ++NPL C PL DFDGD L Y+PQS+ R E+ ELVAL +QL++
Sbjct: 458 LIGLKSKVIR-NNVFAVNPLICPPLFADFDGDTLALYLPQSLQVRAEVAELVALPKQLVS 516
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCDKKLTPPPSIIKAPSRNNSL 120
Q G++++ L+QD+L A+++ V L+ ++ QL+M C P P+I+K+P R + L
Sbjct: 517 SQGGQSIIGLTQDALLGAHLMTRKNVFLDKLDMDQLRMWCPSAEVPVPAIVKSP-RKSPL 575
Query: 121 WSGKQLFSMLLPSNFDYSFPPNGVSVSDGE-LTSSFESSGWLRDSECNIFQRLVERF-QD 178
W+G+QLF M LP+ FD+ G+ + GE L +S +SS WL + + + R+ D
Sbjct: 576 WTGQQLFQMTLPTTFDWESDDGGLIIRQGEILRTSDKSSAWL--GKDGLMTTICRRYGPD 633
Query: 179 KTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGLQEAEQACDFNQ 238
+ L L AQ + +W+S GF +R + EE ++EA+ + +Q
Sbjct: 634 RALEHLDIAQGIAVDWISERGFSVGLCDFYMAADAVSRRKLEEETLCAVEEAKISSLAHQ 693
Query: 239 LLVD--HYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHMFRNIQSLVD 296
++ D + +S +S N + S+N A + ++ AF+ + + ++
Sbjct: 694 IVSDPRFQVNSVSRPRCNSWNERVQPVTSVN------EATQQAAISAFQSTMKAFERTIE 747
Query: 297 KYA---SKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSY-RMPRELSCAAWNSE 352
++ S+ N+ L M +A SKG+ K++Q CLGLQ Y R+ A N
Sbjct: 748 EHVRENSRENSLLRMVEANSKGSFSKMMQQGGCLGLQLRQGEFVYHRVKSLFPRAVENES 807
Query: 353 KGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNADLPGTL 412
+G L S + + +VESSFL GL+P E F HS+++R + +
Sbjct: 808 RGY---------LTSSELWKSMGLVESSFLDGLDPREFFIHSLSSRKGNDGSQQRC-ASF 857
Query: 413 TRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTDKDSSCDSGFQEGTVGGEPVGALSAC 472
R LM +M+D+ YD T+R+ +G + QFSY + GEPVG L+
Sbjct: 858 FRFLMSYMKDIRVEYDNTIRSTHGGHIFQFSYGATAEP------------GEPVGLLAGT 905
Query: 473 AISEAAY----SALGQPISLLETSPLLNLKNVLECGSRKKSGDQTVSLFLSDKLGKQRYG 528
A+ E Y S+ Q ++L+T L+N+L S K D+ V+L KL K
Sbjct: 906 AVIEPVYDQVMSSSPQASTMLKT-----LQNILFSNSFKDI-DRCVTL----KLQKLPVQ 955
Query: 529 FEYAALEVKNYLERVMFSDIVSTVMIMFTPQS--SSLEIFNPWVCHFHLDKEIVARRKLT 586
E+ AL+V+++L+ V + S + I ++P S + PW+ F L E + R L
Sbjct: 956 PEWIALQVQDFLKPVTIGMLASKIWIEYSPCSEVGGQKKRVPWIGCFQLRAEAMERCSLN 1015
Query: 587 VHSVIESLYRRYESLTKESKVTFPNLKISSNRKCSKEGGYASLNKEKEDVDCISVTIVES 646
+ +++ L + + + L S DV+ + + S
Sbjct: 1016 IDTIVCHLRKLLPTSLDDPDAFIQGLHFFS-----------------RDVEVLCFFPITS 1058
Query: 647 SRSSAKLEAVRDLMIPFLLG----TVIKGFLE-IKKVDILWSNRSKVSNSYAGSSGELYL 701
S S+ + + MI + G V+KG I+ V++ W + EL +
Sbjct: 1059 SVSNYDSKQIHKHMIGTMFGNLLQVVVKGCPRGIEFVNVKWED-------------ELCI 1105
Query: 702 RVTMSSDGDSGRFWGVLINHCHRIMPMIDWTRSHPDNIHHFCSAYGIDAGRQYFLHSLAS 761
V S G W + C I ++DW +S P +I A+GI+A QY L L
Sbjct: 1106 EVAFLSR-TRGVPWTHALEACGSISHLVDWQKSTPLSIQEVHVAFGIEAAYQYLLEKLKE 1164
Query: 762 ATTETGKSILPKHLHLVANSLSASGEFVGLNAKGIGRQRKHASVSSPFVQACFSNPGTSF 821
T G +L K + + S FV K+ S SP A +PG F
Sbjct: 1165 FT--KGSGVLRKPWKNIDANESGYEAFV-----------KNLSGCSPLAFAMGKSPGGVF 1211
Query: 822 IKAAKSGVLDDLQGCLDALAWGKCMSMGTSGQFDIMHSE---KVEEFPESADVYSLLIAN 878
AA + +D L G + GK S+GT ++ E V FP+ + L+ +
Sbjct: 1212 EAAAMNREVDYLAGANELAFCGKSPSLGTGANIELFFKEDKGPVSRFPD----FESLVFS 1267
Query: 879 FDQLNDKVDIPHYHNRSSNKCDSEFSRKNGGYALKEYKQSKSFIRNFVTVNDIQKLAFES 938
++D V + S K+ Q QKL
Sbjct: 1268 RRVVDDTV-------------SATLSAKDREIVWARIDQRS------------QKL---- 1298
Query: 939 RSILSRYSIDQVISDHDKITMLRVLHFHPRKNEKLGCGPADIKVGWHPVHK-DSRCFHII 997
IL + +S ++ +L L +HP + K+GCG I+V H H RCFHI+
Sbjct: 1299 HDILRKSLTGTPVSAANEAVILDTLKYHPMMDSKVGCGVRHIRVDNH--HSFGGRCFHIV 1356
Query: 998 RSDESVEDFSYRKCILRALEIVDPGKFRIQ--KKKWLG 1033
R D SVEDFSY KC+ LE + +Q KKK++G
Sbjct: 1357 RLDGSVEDFSYHKCL---LERIKGNTVLVQRYKKKFMG 1391
>D8RN79_SELML (tr|D8RN79) DNA-directed RNA polymerase OS=Selaginella moellendorffii
GN=SELMODRAFT_413061 PE=3 SV=1
Length = 1444
Score = 325 bits (834), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 294/1040 (28%), Positives = 469/1040 (45%), Gaps = 144/1040 (13%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
+I L +V+ ++V ++NPL CSPL DFDGD L Y+PQS+ R E+ ELVAL +QL++
Sbjct: 461 LIGLKSKVIR-NNVFAVNPLICSPLFADFDGDTLALYLPQSLQVRAEVAELVALPKQLVS 519
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCDKKLTPPPSIIKAPSRNNSL 120
Q G++++ L+QD+L A+++ V L+ ++ QL+M C P P+I+K+P R + L
Sbjct: 520 SQGGQSIIGLTQDALLGAHLMTRKNVFLDKLDMDQLRMWCPSAKVPVPAIVKSP-RKSPL 578
Query: 121 WSGKQLFSMLLPSNFDYSFPPNGVSVSDGE-LTSSFESSGWLRDSECNIFQRLVERF-QD 178
W+GKQLF M LP+ FD + + GE L +S +SS WL + + + R+ D
Sbjct: 579 WTGKQLFQMTLPTTFDSESDDGRLIIRQGEILRTSDKSSAWL--GKDGLMTTICRRYGPD 636
Query: 179 KTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGLQEAEQACDFNQ 238
+ L L AQ + +W+S GF +R + EE ++EA+ + +Q
Sbjct: 637 RALEHLDTAQGIAVDWISERGFSVGLCDFYMAADAVSRRKLEEETLCAVEEAKISSLAHQ 696
Query: 239 LLVDH--YCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHMFRNIQSLVD 296
++ D + +S S N + S N A + ++ AF+ + + ++
Sbjct: 697 IVSDSRFQVNSVSRPRCSSWNERVQPVTSAN------EATQQAAISAFQSTMKAFERTIE 750
Query: 297 KYA---SKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSY-RMPRELSCAAWNSE 352
++ S+ N+ L M +A SKG+L K++Q CLGLQ Y R+ A N
Sbjct: 751 EHVRENSRENSLLRMVEAKSKGSLSKMMQQGGCLGLQLRQGEFVYHRVKSLFPRAVENES 810
Query: 353 KGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNADLPGTL 412
+G L S + + +VESSFL GL+P E F HS+++R + + +
Sbjct: 811 RGY---------LTSSELWKSMGLVESSFLDGLDPREFFIHSLSSRKGN-DGSQQRCASF 860
Query: 413 TRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTDKDSSCDSGFQEGTVGGEPVGALSAC 472
R LM +M+D+ YD T+R+ +G + QFSY + GEPVG L+
Sbjct: 861 FRFLMSYMKDIRVEYDNTIRSTHGGHIFQFSYGATAEP------------GEPVGLLAGT 908
Query: 473 AISEAAY----SALGQPISLLETSPLLNLKNVLECGSRKKSGDQTVSLFLSDKLGKQRYG 528
A+ E Y S+ Q ++L+T L+N+L S K D+ V+L KL K
Sbjct: 909 AVIEPVYDQVMSSSPQASTMLKT-----LQNILFSNSFKDI-DRCVTL----KLQKLPVQ 958
Query: 529 FEYAALEVKNYLERVMFSDIVSTVMIMFTPQS--SSLEIFNPWVCHFHLDKEIVARRKLT 586
E+ AL+V+++L+ V + S + I ++P S + PW+ F L E + R L
Sbjct: 959 PEWIALQVQDFLKPVTIGMLASKIWIEYSPCSEVGGQKKRVPWIGCFELRAEAMERCSLN 1018
Query: 587 VHSVIESLYRRYESLTKESKVTFPNLKISSNRKCSKEGGYASLNKEKEDVDCISVTIVES 646
+ +++ L ++ + + L S DV+ + + S
Sbjct: 1019 IDTIVCHLRKQLPTSLDDPDAFIQGLHFFSR-----------------DVEVLCFFPITS 1061
Query: 647 SRSSAKLEAVRDLMIPF----LLGTVIKGFLE-IKKVDILWSNRSKVSNSYAGSSGELYL 701
S S+ + + MI LL V+KG I+ V++ W + EL +
Sbjct: 1062 SVSNYDSKQIHKHMIGTMFRNLLQVVVKGCPRGIEFVNVKWED-------------ELCI 1108
Query: 702 RVTMSSDGDSGRFWGVLINHCHRIMPMIDWTRSHPDNIHHFCSAYGIDAGRQYFLHSLAS 761
V S G W + C I ++DW +S P +I A+GI+A QY L L
Sbjct: 1109 EVAFLSR-TRGVPWTHALEACGSISHLVDWQKSTPLSIQEVHVAFGIEAAYQYLLEKLKE 1167
Query: 762 ATTETGKSILPKHLHLVANSLSASGEFVGLNAKGIGRQRKHASVSSPFVQACFSNPGTSF 821
T G +L K + + S FV K+ S SP A +PG F
Sbjct: 1168 FT--KGSGVLRKPWKNIDANESGYEAFV-----------KNLSGCSPLAFAMGKSPGGVF 1214
Query: 822 IKAAKSGVLDDLQGCLDALAWGKCMSMGTSGQFDIMHSE---KVEEFPESADVYSLLIAN 878
AA + +D L G + GK S+GT ++ E V FP+ + L+ +
Sbjct: 1215 EAAAMNREVDYLAGANELAFCGKSPSLGTGANIELFFKEDKGPVSRFPD----FESLVFS 1270
Query: 879 FDQLNDKVDIPHYHNRSSNKCDSEFSRKNGGYALKEYKQSKSFIRNFVTVNDIQKLAFES 938
++D V + S K+ Q QKL
Sbjct: 1271 RRVVDDTV-------------SATLSAKDREIVWARIDQRS------------QKL---- 1301
Query: 939 RSILSRYSIDQVISDHDKITMLRVLHFHPRKNEKLGCGPADIKVGWHPVHK-DSRCFHII 997
IL + +S ++ +L L +HP + K+GCG I+V H H RCFHI+
Sbjct: 1302 HDILRKSLTGTPVSAANEAVILDTLKYHPMMDSKVGCGVRHIRVDNH--HSFGGRCFHIV 1359
Query: 998 RSDESVEDFSYRKCILRALE 1017
R D SVEDFSY +C+L ++
Sbjct: 1360 RLDGSVEDFSYHRCLLERIK 1379
>Q1L5X9_MARPO (tr|Q1L5X9) DNA-directed RNA polymerase (Fragment) OS=Marchantia
polymorpha GN=RPD1 PE=2 SV=1
Length = 1008
Score = 324 bits (830), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 253/897 (28%), Positives = 413/897 (46%), Gaps = 89/897 (9%)
Query: 24 PLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLME 83
P DFDGDCLH ++PQ+ +R EL++L+ + Q++ +L LSQD + A Y++
Sbjct: 1 PYNADFDGDCLHVFVPQTEESRAELHQLMTIPAQILPSPDENTILGLSQDYVLATYLVTS 60
Query: 84 DGVLLNLYEIQQLQMLCDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFDYSFPPNG 143
+ L + QL M K+L P P+I+K+P + LW+GKQ+ + +P F +
Sbjct: 61 SPLFLPKDSMHQLAMWTKKQL-PVPTIVKSP-KLGPLWTGKQVIDLAIPEGFSFQSNNGA 118
Query: 144 VSVSDGELTSSFESSGWLRDSECNIFQRLVERFQDKTLNLLYDAQKVLCEWLSMTGFXXX 203
+ DGE+ S E S WL ++ + + + ++ D + + +Q VL EWL GF
Sbjct: 119 TRIHDGEILSCGEKSNWLASTK-GLVRIIAQKNTDAAVEHIDCSQAVLREWLLSQGFSVS 177
Query: 204 XXXXXXXXXXCARENMMEEISYGLQEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDM 263
R + +I L+ A+ C F + L+ + + +++ +D
Sbjct: 178 LEDFYAAPDQDMRRKLKYKIEDNLEHAQ--CMF---VCRGDKKILNINTSSNASMSILDS 232
Query: 264 DSLNYEKHISAALSEVSVDAFRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQH 323
+ + + L + ++ +FR I + S N LTM ++GSKG+ LK++Q
Sbjct: 233 AAPSERRRRRHGLEDAAISSFRQTQSQIGETFIESISDSNCLLTMVRSGSKGSNLKVMQQ 292
Query: 324 SMCLGLQ---HSLVRLSYRMPRELSCAAWNSEKGLNSMPM-FSNTLKSIQCYIPHAVVES 379
LG Q + +++ P+ + AA SM N L+ I + +V+S
Sbjct: 293 IGSLGFQVIKGEELLSTHKNPKLVRLAA--------SMGYSMENDLQDI--WEIRGLVKS 342
Query: 380 SFLTGLNPLECFAHSVANRDSSFSDNADL--PGTLTRRLMFFMRDLYQAYDGTVRNLYGN 437
S L GL P E F H+++ RD F + D+ PG L +RLM F+RD++ AYDGTVRN+ G
Sbjct: 343 SLLDGLEPHEFFVHAISVRDGLFRQSLDIAEPGELFKRLMLFLRDIHIAYDGTVRNMGGL 402
Query: 438 QLIQFSYDTDK----DSSCDSGFQEGTV-GGEPVGALSACAISEAAYSALGQPISLLETS 492
++IQF YD K DS + TV G+ VG L+A AIS+ AY + + L +
Sbjct: 403 EIIQFEYDGGKCMTQDSENKNTLSNKTVMPGDAVGILAATAISQPAYQVMLEATQCLASR 462
Query: 493 PLLNLKNVLE-----CGSRKKSGDQTVSLFLSDKLGKQRYGFEYAALEVKNYLERVMFSD 547
+ L+ + E S+ K D+ L L +Y E L++++ L+ V
Sbjct: 463 KIRPLELLQESLFPRSTSKLKESDRVSILRLHRCKSDGKYCEERRVLKLQDELQPVTMEI 522
Query: 548 IVSTVMIMFTPQSS---------SLEI----FNPWVCHFHLDKEIVARRKLTVHSVIESL 594
+ + I ++ SS + E+ F PWV H LDK ++ +K++ +++ L
Sbjct: 523 LATETAIAYSSDSSEQWEGLDCAATELKQTEFFPWVGHVQLDKMVLTEKKISQEMILDRL 582
Query: 595 YRRYESLTKESKVTFPNLKISSNRKCSKEGGYASLNKEKEDVD---------CISVTIVE 645
+ S K K +I + C ++ +N +E V C+ +
Sbjct: 583 H----SKVKIHKSVSRKFRIGNIVFCIRDSCTCDMNIYQETVKLRQKEVVGPCLHFLLTR 638
Query: 646 SSRSSAK---------------LEAVRDLMIPFLLGTVIKGFLEIKKVDILWSNRS---- 686
S+R + LE +++ +IP +L TV+KG +++ V+ILW + +
Sbjct: 639 STRGKVRSIKTVKEVSNETVELLEVLQNFIIPEILKTVVKGSEKLQSVNILWEDATWSPP 698
Query: 687 -----KVSNSYAGSSGELYLRVTMSS--DGDSGRFWGVLINHCHRIMPMIDWTRSHPDNI 739
SN GEL L VT+ G W + C + + +DW RS P +I
Sbjct: 699 VKSEENDSNVMKSGRGELVLEVTVKELYSQSRGMPWRTVQESCIQFVDYVDWQRSSPYSI 758
Query: 740 HHFCSAYGIDAGRQYFLHSLASATTETGKSILPKHLHLVANSLSASGEFVGLNAKGIGRQ 799
S G+DA R L L A G SI KHL LVA+ + SGE GL + G
Sbjct: 759 QEIKSVLGVDAARDVLLQRLELA---AGNSIGNKHLKLVADFMVYSGEVQGLTSYGYRDW 815
Query: 800 RKHASVSSPFVQACFSNPGTSFIKAAKSGVLDDLQGCLDALAWGKCMSMGTSGQFDI 856
+ SSPF F P F++A + G + G L + +GK + +GT FD+
Sbjct: 816 MRSLKFSSPFTAGAFRAPIKHFLEAGRKGATERFSGVLASSVFGKKVPLGTGAVFDL 872
>Q1L5X8_9BRYO (tr|Q1L5X8) DNA-directed RNA polymerase (Fragment) OS=Sphagnum sp.
JL-2005 GN=RPD1 PE=2 SV=1
Length = 969
Score = 315 bits (806), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 242/903 (26%), Positives = 421/903 (46%), Gaps = 75/903 (8%)
Query: 24 PLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLME 83
P DFDGD H ++PQSV A VEL EL+ + +Q+I Q G LL L+QD+L AA+++
Sbjct: 1 PYNADFDGDIFHIFVPQSVEAMVELKELMTVQQQIICSQGGLPLLGLTQDTLLAAHLMTC 60
Query: 84 DGVLLNLYEIQQLQMLCDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFDYSFPPNG 143
V L+ + QLQM + P +I+K+P + LW+G+QL+S+ LP+ D+
Sbjct: 61 QKVFLDKVSMDQLQMWSSAAVVPEAAILKSP-KGGPLWTGEQLYSLTLPAGVDFHTLDGE 119
Query: 144 VSVSDGELTSSFESSGWLRDSECNIFQRLVERF-QDKTLNLLYDAQKVLCEWLSMTGFXX 202
V + +GE+ + SS WL+ ++ + ++ + + L A+ +L WL GF
Sbjct: 120 VLIRNGEILKTGFSSKWLQKGRNSLIDAICDQSGPEAVVEYLNSAKGLLHAWLDSNGFST 179
Query: 203 XXXXXXXXXXXCARENMMEEISYGLQEAEQACDFNQLLVDHYCD------FLSGSLQDSD 256
R +M++ +S + + N L + CD LS L+
Sbjct: 180 GLTDFLVTSNAKERRSMLQRVSVDCLQRAKEQSINTLQI---CDAKFQLSHLSVDLEVDG 236
Query: 257 NVASIDMDSLNYEKHISAALSEVSVDAFRHMFRNIQSLVDKYASKGNAFLTMFKAGS-KG 315
++++ + + L +++ AFR + ++V + + N+ +M KAGS K
Sbjct: 237 AFDRLEVNPASLSNKVQM-LESIAIKAFRASMAGMGNIVQESSVSQNSLFSMVKAGSTKA 295
Query: 316 NLLKLVQHSMCLGLQHSLVRLSYRMPRELSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHA 375
++ KL+ C+GLQ L + + +P S NS P+ S + + H
Sbjct: 296 SMSKLLDQIACMGLQ--LYKGEHMLP--------FSHVLNNSAPLESQLQ---EWWEDHG 342
Query: 376 VVESSFLTGLNPLECFAHSVANRDSSFSDNADL--PGTLTRRLMFFMRDLYQAYDGTVRN 433
+V++S + GL + F H +ANR S + ++ PGTL + LM F+RDL+ YDGTVR+
Sbjct: 343 LVQNSLVDGLTAFQLFNHVIANRTSILRKHVEVVQPGTLFKVLMLFLRDLHVGYDGTVRS 402
Query: 434 LYGNQLIQFSYD-------TDKDSSCDSGFQEGTVGGEPVGALSACAISEAAY-SALGQP 485
G +++QF Y + D ++ + GEPVG L+A A+S+ AY S L P
Sbjct: 403 QCGQKVVQFCYGGARARHRRSRKEDPDLRWKVSYLAGEPVGVLAATALSQPAYESMLDAP 462
Query: 486 I-SLLETSPLLNLKNVLECGSR--KKSGDQTVSLFLSDKLGKQRYGFEYAALEVKNYLER 542
S + PL ++ L + K+ D+ L L+ + E L V+N L R
Sbjct: 463 HHSGWKIRPLELVQETLYPREKGDPKAVDRRAILRLTHCDCSKSSCLERRVLRVQNQLRR 522
Query: 543 VMFSDIVSTVMIMFTPQS---------SSLEIFNPWVCHFHLDKEIVARRKLTVHSVIES 593
++ + T +I + + ++L + +PW+ H H+ KE++ + +LT+ ++
Sbjct: 523 IILKTLAQTSIIEYWDATNERKAGVNGAALRLGSPWLGHIHISKEVLQQHELTMTKIVGK 582
Query: 594 LYRRYESLTKESKVT-FPNLKISSNRKCSKEGGY-----ASLNKEKE---DVDCISVTIV 644
L R++ L +K + + C G L K+ + D D S +++
Sbjct: 583 LQRKFSILRPITKKNPLGQIFFCHSEFCDVSRGLCIHFSPKLPKKMQNQYDDDEYSHSLL 642
Query: 645 ESSRSSAKLEAVRDLMIPFLLGTVIKGFLEIKKVDIL-----W-SNRSKVSNSYAGSSGE 698
E ++ +RD ++P LL IKG ++ V I+ W S K + E
Sbjct: 643 EL------MKKMRDRILPALLECTIKGDERLESVKIVQEDCTWPSWHPKTAGVVRPGEEE 696
Query: 699 LYLRVTMSSD----GDSGRFWGVLINHCHRIMPMIDWTRSHPDNIHHFCSAYGIDAGRQY 754
L L V +S W ++ C +M +DW RS P +I A GI+ Q
Sbjct: 697 LVLEVVATSSLHQKSKRNMAWNAVMEACVPVMEEVDWQRSMPYSIQEMKHALGIEVAYQM 756
Query: 755 FLHSLASATTETGKSILPKHLHLVANSLSASGEFVGLNAKGIGRQRKHASVSSPFVQACF 814
+ +A A ET +H+ L+ ++++ SG+ G G K A +S+PF +A +
Sbjct: 757 VVQRVALALEETAPHTYREHIKLIGDTMTYSGDANGFTFSGFRDMIKSAHISAPFTEAAY 816
Query: 815 SNPGTSFIKAAKSGVLDDLQGCLDALAWGKCMSMGTSGQFDIMHSEKVEEFP--ESADVY 872
P +F+ AA G +D L+ + + WG+ +GT + ++ E+ E D++
Sbjct: 817 QKPIRNFLDAAAKGAMDSLESVMTSCVWGREAPLGTGTKIELRWQPPHEDLQEVEEKDLH 876
Query: 873 SLL 875
++L
Sbjct: 877 AIL 879
>Q7XTZ3_ORYSJ (tr|Q7XTZ3) DNA-directed RNA polymerase OS=Oryza sativa subsp.
japonica GN=OSJNBa0019K04.4 PE=3 SV=2
Length = 1664
Score = 301 bits (771), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 176/476 (36%), Positives = 268/476 (56%), Gaps = 41/476 (8%)
Query: 215 ARENMMEEISYGLQEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISA 274
+R + EE+ L EAE+A Q+L++ D+ ++ D S + +S
Sbjct: 548 SRRKLSEEVHLALDEAEEAFQIKQILLNSVSIPNLKYYDGGDDRSNTDEQSGFTQ--VSL 605
Query: 275 ALSEVSVDAFRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLV 334
+ S+ +F+ +F ++ +V +Y SK N+ +TM +GSKG++LK VQ + C+GLQ
Sbjct: 606 PIIRSSMTSFKSVFNDLLKMVQQYVSKDNSMMTMINSGSKGSVLKFVQQTACVGLQLPAS 665
Query: 335 RLSYRMPRELSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHS 394
+ +R+P +LSC +WN K N + T + + +AVV +SFL GLNPLEC H+
Sbjct: 666 KFPFRIPSQLSCVSWNRHKSRNC-EITDGTSECVGGQDMYAVVRNSFLDGLNPLECLLHA 724
Query: 395 VANRDSSFSDNADLPGTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTDKDSSCDS 454
++ R + FS+NAD+PGTLTR+LM+ +RD Y AYDGTVR+ YG Q+++FSYDT D
Sbjct: 725 ISGRANFFSENADVPGTLTRKLMYHLRDTYVAYDGTVRSSYGQQIVRFSYDTADGMYSDH 784
Query: 455 GFQEGTVGGEPVGALSACAISEAAYSALGQPISLLETSPLLNLKNVLECGSRKKSGDQTV 514
EG G PVG+ +AC+ISEAAY AL P++ LE SPL+NL+ VL+C S D T
Sbjct: 785 DL-EGEPGA-PVGSWAACSISEAAYGALDHPVNSLEDSPLMNLQEVLKCHKGTNSLDHTG 842
Query: 515 SLFLSDKLGKQRYGFEYAALEVKNYLERVMFSDIVSTVMIMFTPQSSSLEIFNPWVCHFH 574
LFLS L K RYGFEYA+LEVK++LERV FSD+V
Sbjct: 843 LLFLSKHLRKYRYGFEYASLEVKDHLERVDFSDMV------------------------- 877
Query: 575 LDKEIVARRKLTVHSVIESLYRRYESLTKESKVTFPNLKISSNR--------KCSKEGGY 626
D E + ++L + ++ + +Y +L K+ P++ IS++ K K G
Sbjct: 878 -DTETMKIKRLRLEFIVREIIDQYNTLRKQLNNAIPSVSISNSETLHLKMENKSGKLGKN 936
Query: 627 ASLNKE--KEDVDCISVTIVESSRSSAKLEAVRDLMIPFLLGTVIKGFLEIKKVDI 680
E K C+++ + S ++L+ +++ +IP +L T++KGFLE K V +
Sbjct: 937 LGTGNECVKNQTCCVTMVVQVEINSMSQLDVIKERVIPSILATLLKGFLEFKNVKV 992
Score = 142 bits (358), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 70/129 (54%), Positives = 87/129 (67%), Gaps = 1/129 (0%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
+I+LS ++L S VSINPLCC P +GDFDGDCLHGYIPQ + +R+EL ELV L QL+N
Sbjct: 416 LIALSAKLLSTQSAVSINPLCCDPFKGDFDGDCLHGYIPQCLQSRIELEELVGLSGQLLN 475
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCDK-KLTPPPSIIKAPSRNNS 119
Q GR+L+SL+ DSL AA+ L V L E QQLQML LTP PS+ K+ +
Sbjct: 476 QQDGRSLVSLTHDSLAAAHQLTNADVFLEKAEFQQLQMLSSSISLTPMPSVFKSTNSQGP 535
Query: 120 LWSGKQLFS 128
LW+ LFS
Sbjct: 536 LWTDLYLFS 544
Score = 115 bits (288), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 107/199 (53%), Gaps = 6/199 (3%)
Query: 817 PGTSFIKAAKSGVLDDLQGCLDALAWGKCMSMGTSGQFDIMHSEKVEEFPESADVYSLLI 876
P SFI AAK +D+L G LDA+AWGK G+SG F I++S K E ++ +Y L
Sbjct: 1051 PAHSFINAAKRDSVDNLSGTLDAIAWGKEPCAGSSGPFKILYSGKSHETKQNEHIYDFLH 1110
Query: 877 ANFDQLNDKVDIPHYHNRSSNKCDSEFSRKNGGYALKEYKQSKSFIRNFVTVN-----DI 931
Q +K + Y R+ + + G A + SF + F+ +I
Sbjct: 1111 NPEVQALEKNVMDTYRKRTEKTSKRRSALNSEGNATIN-GGAISFNQKFLNAKVGIWENI 1169
Query: 932 QKLAFESRSILSRYSIDQVISDHDKITMLRVLHFHPRKNEKLGCGPADIKVGWHPVHKDS 991
+ +++L Y++++V+++ DK ++ L FHPR +K+G G +IK+G +P H S
Sbjct: 1170 IDMRTSLQNMLREYTLNEVVTEQDKSCLMEALKFHPRGYDKIGVGIREIKIGVNPGHPSS 1229
Query: 992 RCFHIIRSDESVEDFSYRK 1010
RCF ++R+D++ DFSY K
Sbjct: 1230 RCFIVLRNDDTTADFSYNK 1248
>Q1L5Y1_9MONI (tr|Q1L5Y1) DNA-directed RNA polymerase (Fragment) OS=Ceratopteris
thalictroides GN=RPD1 PE=2 SV=1
Length = 836
Score = 285 bits (729), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 232/866 (26%), Positives = 390/866 (45%), Gaps = 73/866 (8%)
Query: 27 GDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGV 86
DFDGDCL ++PQS+ ++ E+ EL+ ++ Q++ G+ +L+QD+L A L +
Sbjct: 2 ADFDGDCLAVFVPQSLESKTEVKELMMVENQMLTSHGGQCTFTLTQDALLGACKLTSPHL 61
Query: 87 LLNLYEIQQLQMLC--DKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFDYSFPPNGV 144
L+ Q +++ C P P++IK+P W+G Q F + LPS +Y NGV
Sbjct: 62 FLSR---QTMEIACMNTSSTLPKPAVIKSP--KGPFWTGVQCFQLSLPSAVNYDM--NGV 114
Query: 145 SVSDGELTSSFESSGWLRDSECNIFQRLVERFQ-DKTLNLLYDAQKVLCEWLSMTGFXXX 203
+S GE+ + WL S ++ +++++F + LN L + +L EW+S GF
Sbjct: 115 RISCGEILNITHDPEWLGGSRNSLLYQIIQQFGGNVALNYLGAVESLLVEWISRKGFTVG 174
Query: 204 XXXXXXXXXXCARENMMEEISYGLQEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDM 263
R+ + + I + E E+ + D G ++ S + S++
Sbjct: 175 LYDVYATADWTTRDKLKKAIQVNIGEEEKQVRRKLQDLSLQSDISLGEMKLSMGL-SVES 233
Query: 264 DSLNYEKHISAALSEVSVDAFRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQH 323
+++ S ++++ + + +I+S K A+ N+ L M + GSKG++ K +
Sbjct: 234 NAI-IPSMYSRMAEKIALKYMQKLCSHIESDSVKNANADNSMLEMVRCGSKGSIKKFSEQ 292
Query: 324 SMCLGLQHSLVRLSYRMPR-ELSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFL 382
LGLQ + + +LSC + + + F + +V+SSF
Sbjct: 293 FAFLGLQPYKGKFMHPTKNMQLSCMHQDEQNVMYDQDGF--------LWGERGIVKSSFA 344
Query: 383 TGLNPLECFAHSVANRDSSFSDNADL--PGTLTRRLMFFMRDLYQAYDGTVRNLYGNQLI 440
GL+P E F H+V+ R++ + PG L + ++ F RD+ YDGTVR+ +G +I
Sbjct: 345 EGLSPQEFFVHTVSYRETMIHKALRVSEPGYLYKNMVLFARDVCMHYDGTVRSEHGKHII 404
Query: 441 QFSYDTDKDSSCDSGFQEGTVGGEPVGALSACAISEAAYSALGQ-PISL--LETSPLLNL 497
QF Y +S T GEPVG L+A AIS+ AY L + P L L PL L
Sbjct: 405 QFDYGCK-----ESNMPGSTPPGEPVGFLAATAISQPAYQMLLESPNQLNDLAFCPLELL 459
Query: 498 KNVLEC--GSRKKSGDQTVSLFLSDKLGKQRYGFEYAALEVKNYLERVMFSDIVSTVMIM 555
+ + S K D V L++ + G + E AA+EV L+ V ++ ++ +
Sbjct: 460 QETIYSRKASVSKPNDLRVVLYIKEVDG---FSKEAAAMEVSQSLQHVTLEMLLCSLSVK 516
Query: 556 FT------------PQSSSLEIFNPWVCHFHLDKEIVARRKLTVHSVIESLYRRYESLTK 603
F P S PW+ H LD+ ++ L ++ + L L
Sbjct: 517 FVGNMQAGFWKGLLPTKKS-----PWIVHMLLDQTALSAYNLEAEAIAKKL------LNT 565
Query: 604 ESKVTFPNLKISSNRKCSKE-GGYASLNKEKEDVDCISVTIVESSRSSAKLEAVRDLMIP 662
S +F L + C G L++ C+S +S L +RD+++P
Sbjct: 566 NSVHSFGALHFVARGSCDLSCPGCTRLSENPCLSFCLSTA--QSPSIEEALSQIRDIIVP 623
Query: 663 FLLGTVIKGFLEIKKVDILWSNRSKVSNSYAG-------SSGELYLRVTMSSDGDSGR-- 713
++ ++G IK V IL S + + SS E+ L VT+ S R
Sbjct: 624 HIMKVSVRGDRRIKSVSILPSGILSEAVPFGSQEHYRERSSTEIALEVTIHGKLKSTRQK 683
Query: 714 --FWGVLINHCHRIMPMIDWTRSHPDNIHHFCSAYGIDAGRQYFLHSLASATTETGKSIL 771
W V+++ C ++ I+W RS P I + +GI+A H L S + K++
Sbjct: 684 TNAWNVVLDLCGSVLHKINWLRSMPSGIQAIANVFGIEAAHNCIYHRLKSILSMFDKTVY 743
Query: 772 PKHLHLVANSLSASGEFVGLNAKGIGRQRKHASVSSPFVQACFSNPGTSFIKAAKSGVLD 831
H+ ++ ++ SG +GLNA G +S+P Q+ F + AA G D
Sbjct: 744 DHHVIVITELMTHSGNVIGLNAAGFREISNSLHISAPITQSLFQSSIKHIQTAALRGKCD 803
Query: 832 DLQGCLDALAWGKCMSMGTSGQFDIM 857
DL G L A+ WGK +GT +FDI+
Sbjct: 804 DLSGTLAAICWGKLAPVGTGAKFDIL 829
>M5XM01_PRUPE (tr|M5XM01) Uncharacterized protein OS=Prunus persica
GN=PRUPE_ppa000088mg PE=4 SV=1
Length = 1855
Score = 273 bits (698), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 246/895 (27%), Positives = 413/895 (46%), Gaps = 104/895 (11%)
Query: 14 VVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNLLSLSQD 73
VV INPL C PL DFDGDC+H + PQS+AA+ E+ EL ++++QL++ SG+ L L+ D
Sbjct: 438 VVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHSGKPNLQLAAD 497
Query: 74 SLTAAYMLMEDGVLLNLYEIQQLQMLCDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPS 133
+L + M+ + L+ QQL M L P P+++KA S + S W+ Q+ LP+
Sbjct: 498 ALLSLKMMFKK-YFLDKAAAQQLAMFASSSL-PRPALLKANSAH-SYWTAFQILQTALPA 554
Query: 134 NFDYS---FPPNGVSVSDGELTSSFESSGWLRDSECNIFQRLVERFQDKTLNLLYDAQKV 190
+FD S + N + + + ++S + + D ++F E+ + L Q +
Sbjct: 555 HFDCSGDNYLVNKSEILNIDFSTS-SVAAVMNDIATSVF---FEKGGEDVLKFFDSLQPL 610
Query: 191 LCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGLQEAEQACDFNQLLVDHYCDFLS- 249
L E L GF S GL+ DF ++S
Sbjct: 611 LMENLFSEGF-----------------------SVGLE------DF----------YMSR 631
Query: 250 GSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHMFRNIQSLVDKYASKGNAFLTMF 309
S+QD + DS + H+ + +E ++ R+++ V + + +A +
Sbjct: 632 TSIQD---IQKNIQDSSDLLYHLRSTYNEFVEFQLQNRIRSVKVPVSHFILESSALGDLI 688
Query: 310 KAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCAAWNSEKGLNSMPMFSNTLKSIQ 369
+ S + K+VQ LGLQ S Y A+ K + + S
Sbjct: 689 DSKSDSAINKIVQQIGFLGLQLSDKGRFYSKTLVEDVASLCHSKYPSDIDYPS------- 741
Query: 370 CYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNADL--PGTLTRRLMFFMRDLYQAY 427
+ +V+S F GL+P E HS+A R+ + L PGTL + LM +RD+ Y
Sbjct: 742 --AEYGLVQSCFFHGLDPYEAIVHSIATREVIVRSSRGLSEPGTLFKNLMAILRDVVICY 799
Query: 428 DGTVRNLYGNQLIQFSYDTDKDSSCDSGFQEGTVGGEPVGALSACAISEAAYSALGQPIS 487
DGTVRN+ N +IQF Y + S F GEPVG L+A A+S AY A
Sbjct: 800 DGTVRNVCSNSIIQFEYGVNIGSRPQHLFP----AGEPVGVLAATAMSNPAYKA------ 849
Query: 488 LLETSPLLN-----LKNVLECGSRKKSG--DQTVSLFLSDKLGKQRYGFEYAALEVKNYL 540
+L+++P N +K +L C K+ D+ V L+L++ ++Y E AA VKN L
Sbjct: 850 VLDSTPSSNSSWELMKEILLCKVNFKNELIDRRVILYLNNCGCGRKYCRERAACLVKNQL 909
Query: 541 ERVMFSDIVSTVMIMFTPQSSSL-EIFNP--WVCHFHLDKEIVARRKLTVHSVIESL--- 594
++V D MI + Q S L + N V H HL+++++ + VH +++
Sbjct: 910 KKVSLKDTAVEFMIEYNNQLSGLGSLINDAGLVGHIHLNEDMLRELNIGVHDILQKCQET 969
Query: 595 ---YRRYESLTKESKVT--FPNLKISSNRKCSKEGGYASLNKEKEDVDCIS--VTIVESS 647
+RR + K+ + F N + ++ CS + S +++ D C+ + +
Sbjct: 970 INSFRRKKVGKKKFNIGYHFKNTVLFASEHCS---FHHSCAEKRSDSPCLMFFLQATDDL 1026
Query: 648 RSSAKLEAVRDLMIPFLLGTVIKGFLEIKKVDILW---SNRSKVSNSYAGSSGELYLRVT 704
++ L+ DL+ P LL T+IKG I +I+W + + + GE L +
Sbjct: 1027 ETTTTLQYYADLICPVLLETIIKGDPRIGSANIIWIDPDTTTWIRSPNKSQKGEWALDIV 1086
Query: 705 MSSD--GDSGRFWGVLINHCHRIMPMIDWTRSHPDNIHHFCSAYGIDAGRQYFLHSLASA 762
+ SG W +++ C ++ +ID RS P I G+ + L++A
Sbjct: 1087 LEKSVIKQSGDAWRTVLDSCLPVLHLIDTRRSIPYAIKQIQELLGVSCAFDQAVQRLSTA 1146
Query: 763 TTETGKSILPKHLHLVANSLSASGEFVGLNAKGIGRQRKHASVSSPFVQACFSNPGTSFI 822
T K +L +HL L+ANS++ +G FVG N+ G + ++ PF +A P F
Sbjct: 1147 VTMVAKGVLKEHLILLANSMTCAGNFVGFNSSGYKALSRALNIQVPFTEATLFTPRKCFE 1206
Query: 823 KAAKSGVLDDLQGCLDALAWGKCMSMGTSGQFDIMHSEKVEEFPESA--DVYSLL 875
+AA+ +D L + + +WGK +++GT +FD++ + E + DV++ L
Sbjct: 1207 RAAEKCHMDSLASIVASCSWGKHVAVGTGVRFDVLWDTREVELTQEGGLDVFNFL 1261
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 37/65 (56%)
Query: 948 DQVISDHDKITMLRVLHFHPRKNEKLGCGPADIKVGWHPVHKDSRCFHIIRSDESVEDFS 1007
D + D + V ++HP K K+GCG + V H +DSRCF ++ +D EDFS
Sbjct: 1738 DPLSGDDQSFVLDNVFNYHPDKAAKMGCGIDHLTVNRHGSFQDSRCFFVVSTDGRTEDFS 1797
Query: 1008 YRKCI 1012
YRKC+
Sbjct: 1798 YRKCL 1802
>Q0JAW4_ORYSJ (tr|Q0JAW4) Os04g0572600 protein OS=Oryza sativa subsp. japonica
GN=Os04g0572600 PE=4 SV=1
Length = 449
Score = 266 bits (681), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 153/445 (34%), Positives = 247/445 (55%), Gaps = 25/445 (5%)
Query: 583 RKLTVHSVIESLYRRYESLTKESKVTFPNLKISSNRKCSKEGGYASLNKEKEDVDCISVT 642
++L + ++ + +Y +L K+ P++ IS N KCS K C+++
Sbjct: 4 KRLRLEFIVREIIDQYNTLRKQLNNAIPSVSIS-NSKCSVGNECV-----KNQTCCVTMV 57
Query: 643 IVESSRSSAKLEAVRDLMIPFLLGTVIKGFLEIKKVDILWSNRSKVSNSYAGSSGELYLR 702
+ S ++L+ +++ +IP +L T++KGFLE K V + EL L+
Sbjct: 58 VQVEINSMSQLDVIKERVIPSILATLLKGFLEFKNVKV-----------QCQEDNELVLK 106
Query: 703 VTMSSDGDSGRFWGVLINHCHRIMPMIDWTRSHPDNIH-HFCSAYGIDAGRQYFLHSLAS 761
V MS SG+FW L N C IM +IDW RS P+ ++ +FCS YGID+ ++F+ S+ S
Sbjct: 107 VGMSEHCKSGKFWATLQNACIPIMELIDWERSRPERVYDNFCS-YGIDSAWKFFVESVRS 165
Query: 762 ATTETGKSILPKHLHLVANSLSASGEFVGLNAKGIGRQRKHASVSSPFVQACFSNPGTSF 821
T G++I +HL +VA+ LS SG+F GL+++G+ +QR S+SSPF +ACFS P SF
Sbjct: 166 TTDAIGRNIHRQHLLVVADCLSVSGQFHGLSSQGLKQQRTWLSISSPFSEACFSRPAHSF 225
Query: 822 IKAAKSGVLDDLQGCLDALAWGKCMSMGTSGQFDIMHSEKVEEFPESADVYSLLIANFDQ 881
I AAK +D+L G LDA+AWGK G+SG F I++S K E ++ +Y L Q
Sbjct: 226 INAAKRDSVDNLSGTLDAIAWGKEPCAGSSGPFKILYSGKSHETKQNEHIYDFLHNPEVQ 285
Query: 882 LNDKVDIPHYHNRSSNKCDSEFSRKNGGYALKEYKQSKSFIRNFVTVN-----DIQKLAF 936
+K + Y R+ + + G A + SF + F+ +I +
Sbjct: 286 ALEKNVMDTYRKRTEKTSKRRSALNSEGNATIN-GGAISFNQKFLNAKVGIWENIIDMRT 344
Query: 937 ESRSILSRYSIDQVISDHDKITMLRVLHFHPRKNEKLGCGPADIKVGWHPVHKDSRCFHI 996
+++L Y++++V+++ DK ++ L FHPR +K+G G +IK+G +P H SRCF +
Sbjct: 345 SLQNMLREYTLNEVVTEQDKSCLMEALKFHPRGYDKIGVGIREIKIGVNPGHPSSRCFIV 404
Query: 997 IRSDESVEDFSYRKCILRALEIVDP 1021
+R+D++ DFSY KC+L A + P
Sbjct: 405 LRNDDTTADFSYNKCVLGAANSISP 429
>A9SIX8_PHYPA (tr|A9SIX8) DNA-directed RNA polymerase OS=Physcomitrella patens
subsp. patens GN=NRPDA1501 PE=3 SV=1
Length = 2458
Score = 266 bits (680), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 237/894 (26%), Positives = 379/894 (42%), Gaps = 141/894 (15%)
Query: 14 VVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNLLSLSQD 73
V++INPL C P DFDGD H +IPQS+ A EL L+A+ +Q+I+ G+ LL L+QD
Sbjct: 838 VLTINPLVCPPFNADFDGDIFHVFIPQSLQAIAELEHLMAVPQQIISDHGGQPLLGLTQD 897
Query: 74 SLTAAYMLMEDGVLLNLYEIQQLQMLCDKKLTPPP--SIIKAPSRNNSLWSGKQLFSMLL 131
+L AAY+L +L++ + QL C L PP +I+K+P + W+G+Q+F + L
Sbjct: 898 TLLAAYLLTSSKLLVDKAGMDQL---CLWALKQPPDAAIVKSP-KGGPFWTGEQIFGLTL 953
Query: 132 PSNFDYSFPPNGVSVSDGELTSSFESSGWLR-DSECNIFQRLVERFQDKTLNLLYDAQKV 190
P++ P V + GE+ + LR DSE V+ +N L A +
Sbjct: 954 PTDLQVGAPHEEVFIEGGEVIRWSNGAKSLRKDSEGIAAALCVQLGPVALVNYLNTATGL 1013
Query: 191 LCEWLSMTGFXXXXXXXXXXXXXCARENMMEEI--SYGLQEAEQACDFNQLLVDHYCDFL 248
L WL M GF R+ M++ I Y + +++CD ++L
Sbjct: 1014 LHAWLQMHGFSTGLADFQVTSNSADRQKMLKSIFEDYYQKSIQESCDSVRIL-------- 1065
Query: 249 SGSLQDSDNVASIDMDSLNYEKHISAA---LSEVSVDAFRHMFRNIQSLVDKYASKGNAF 305
V ++ + ++ H++ L + + FR+ ++S+V KYA++ N
Sbjct: 1066 ------DAKVQAMGQEVISSPDHLTRNINFLEQAAQQTFRNRESEVESIVMKYAARDNGL 1119
Query: 306 LTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCAA---------WNSEKGLN 356
L M ++GSKG+ KL+Q +GLQ L + + +P S + W +KGL
Sbjct: 1120 LMMVRSGSKGSRGKLLQQIAGMGLQ--LYKGQHLLPFSGSRRSSMSNSSELDWWEDKGL- 1176
Query: 357 SMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNADL--PGTLTR 414
V SS + GLNP E F H +A+R + ++ PGTL +
Sbjct: 1177 --------------------VRSSLVDGLNPSELFNHVIADRTVILRKHVEVVQPGTLFK 1216
Query: 415 RLMFFMRDLYQAYDGTVRNLYGNQLIQFSY---------DTDKDSSCDSGFQE------- 458
LM F+RDL+ YDG+VRN G ++QF Y K+ S F+
Sbjct: 1217 SLMLFLRDLHVMYDGSVRNQCGKNIVQFCYGGAIGVLKRSIPKERLSRSQFEVVNPATPI 1276
Query: 459 -------------GTVGGEPVGALSACAISEAAYSAL-----------GQPISLLET-SP 493
+ GEPVG L+A AIS+ AY + +P+ L++
Sbjct: 1277 VTWEEDDLKRWPLSILAGEPVGVLAATAISQPAYELMLDAPCLNGPFKPRPLELVQPFKA 1336
Query: 494 LLNLKNVLE------CGSRKKSGDQTVSLFLSDKLGKQRYGFEYAALEVKNYLERVMFSD 547
LL N+ + S K D+T + L + Q E L V+ +L+++
Sbjct: 1337 LLTFSNLAQETLYPRAKSVLKPIDRTAIIRLVNCPCTQPLCLERRVLAVQAHLKKISLKA 1396
Query: 548 IVSTVMIMF---------TPQSSSLEIFNPWVCHFHLDKEIVARRKLTVHSVIESLYRRY 598
I + + F P +L + +PW+ H L ++ + ++ V ++E L +R+
Sbjct: 1397 IAESCAVEFWNMENFEVAGPSGEALRMGSPWLGHIKLSLNLMKQLQVDVELMVERLRQRF 1456
Query: 599 ESLTKESK----------VTFPNLKISSNRKCSKEGGYASLNKEKEDVDCISVTIVESSR 648
+ K K V++ N IS N C + + D I T +
Sbjct: 1457 SGIIKNPKKHPMGQIFFCVSY-NCGIS-NGLCLHFSPKLPNKMQNQRNDEIYNTAL---- 1510
Query: 649 SSAKLEAVRDLMIPFLLGTVIKGFLEIKKVDIL--------WSNRSKVSNSYAGSSGELY 700
A L +R +I LL +KG I+ V I+ W +
Sbjct: 1511 -LALLLKIRGTIISGLLDCTVKGDERIESVIIVSEDPSRTTWHRGLTCNQELEEELVLEV 1569
Query: 701 LRVTMSSDGDSGRFWGVLINHCHRIMPMIDWTRSHPDNIHHFCSAYGIDAGRQYFLHSLA 760
+ S G W + C +M M+DW RS P +I A G++A Q L
Sbjct: 1570 VVSPTKSKSKRGDAWASVKQACLPLMHMVDWNRSMPYSIQEIRHALGVEASYQMISQRLG 1629
Query: 761 SATTETGKSILPKHLHLVANSLSASGEFVGLNAKGIGRQRKHASVSSPFVQACF 814
+T H+ LVA+ ++ SG+ G N G K +S+PF +A F
Sbjct: 1630 LVLDKTAPHTRSVHVKLVADMMTFSGDANGFNFSGFQDMNKSTGISAPFTEASF 1683
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 930 DIQKLAFESRSIL--SRYSIDQVISDHDKITMLRVLHFHPRKNEKLGCGPADIKVGWHPV 987
DI L R IL R + +SD D + VL +HP+ +EK GCG A IKV
Sbjct: 2212 DIDDLVKSMRRILFNPRNELGGRLSDEDDELVQTVLAYHPKLSEKAGCGTAYIKVDRSAG 2271
Query: 988 HKDSRCFHIIRSDESVEDFSYRKCI 1012
++RCF ++R+D S DFS+ KC+
Sbjct: 2272 FVNNRCFWLVRTDGSEIDFSFHKCL 2296
>K4B027_SOLLC (tr|K4B027) DNA-directed RNA polymerase OS=Solanum lycopersicum
GN=Solyc01g096390.2 PE=3 SV=1
Length = 1678
Score = 259 bits (663), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 244/893 (27%), Positives = 387/893 (43%), Gaps = 106/893 (11%)
Query: 14 VVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNLLSLSQD 73
V INPL C PL DFDGDC+H + PQS++A+ E+ EL A+ +QL++ +G L L+ D
Sbjct: 482 TVKINPLMCGPLSADFDGDCIHLFYPQSLSAKAEVLELFAVGKQLLSSHTGNFNLQLATD 541
Query: 74 SLTAAYMLMEDGVLLNLYEIQQLQMLCDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPS 133
SL + LM + QQL M L P S + ++ ++W+ Q+ LP
Sbjct: 542 SLLS-LKLMFSHYFFDKAAAQQLAMFLPMAL--PDSAVVDVRKSGAMWTTLQILGAALPD 598
Query: 134 NFDYSFPPNGVSVSDGELTSSFESSGWLRDSECNIFQRLVE-----RFQDKTLNLLYDAQ 188
FD G + + G+ S F + RD +I ++ + + L Q
Sbjct: 599 GFDSC----GETHTIGK--SQFLGIDYHRDLISSILNDVITSIYFMKGPNDVLKFFNSLQ 652
Query: 189 KVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGLQEAEQACDFNQLLVDHYCDFL 248
+L E L GF M + + G+QE Q ++LL
Sbjct: 653 PLLMENLCTEGFSISLRDFY----------MTKAVRDGIQERIQC--MSKLL-------- 692
Query: 249 SGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHMFRNIQSLVDKYASKGNAFLTM 308
H+ ++ +E H RN + V + K + +
Sbjct: 693 ---------------------HHLRSSYNESVEVQLEHHLRNEKLPVIDFVLKSSGMGVL 731
Query: 309 FKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCAAWNSEK----GLNSMPMFSNT 364
+ S+ K+VQ LGLQ S Y A +K G N F
Sbjct: 732 IDSKSESAFNKVVQQIGFLGLQISDRGKFYTKTLVHDMAQLFQKKYPSVGTNPSEEF--- 788
Query: 365 LKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNADL--PGTLTRRLMFFMRD 422
+V S GL+P + HS+++R+ L PGTL + LM +RD
Sbjct: 789 ----------GLVRSCLFYGLDPYQGMIHSISSREVIVRSTRGLTEPGTLFKNLMAILRD 838
Query: 423 LYQAYDGTVRNLYGNQLIQFSYDTDKDSSCDSGFQEGTVGGEPVGALSACAISEAAYSAL 482
+ YDGTVRN+ N +IQF Y + S+ S F G+PVG L+A A+S AY A+
Sbjct: 839 VVICYDGTVRNVSSNSIIQFEYGSSGGSNLPSEF----CAGDPVGVLAATAMSNPAYKAV 894
Query: 483 GQPISLLETSPLLNLKNVLECGSRKKS--GDQTVSLFLSDKLGKQRYGFEYAALEVKNYL 540
+S + +K +L CG K+ D+ V L+L+D ++ Y E AA VKN+L
Sbjct: 895 LDSSPSSNSSWEM-MKEILLCGVSFKNDVSDRRVILYLNDCGCRRGYCREKAAYVVKNHL 953
Query: 541 ERVMFSDIVSTVMIMFTPQSSSLE---IFNPWVCHFHLDKEIVARRKLTVHSVIESLYRR 597
+V D +I + + + E + H L++ + ++V V E
Sbjct: 954 SKVCLKDAADEFLIEYAGRQAGYENSETGTGLIGHIRLNQGQLENLGISVLEVHERCQEN 1013
Query: 598 YESLTKESKVT--FPNLKISSNRKCS--KEGGYASLNKEKEDVDCISVTIVESSRSSAKL 653
S K+ K+ F + +S + CS G LN C+ + ++S L
Sbjct: 1014 ISSFQKKKKIGNLFKRIVLSVSEFCSFCHNSGSKCLN-----APCLRFSWPDASDD--HL 1066
Query: 654 EAVR----DLMIPFLLGTVIKGFLEIKKVDILW---SNRSKVSNSYAGSSGELYLRVTMS 706
E V D++ P LL TVIKG + +I W S + + GEL L + +
Sbjct: 1067 ERVSHILADMICPILLDTVIKGDPRVSSANIAWISPDTMSWIRSPSKSQRGELALDIVLE 1126
Query: 707 SDG--DSGRFWGVLINHCHRIMPMIDWTRSHPDNIHHFCSAYGIDAGRQYFLHSLASATT 764
+ G W +L++ C ++ +ID TRS P I GI + + L+++ T
Sbjct: 1127 KEAVKQRGDAWRILMDSCLPVIHLIDTTRSIPYAIKQVQELIGISCAFEQAVKRLSTSVT 1186
Query: 765 ETGKSILPKHLHLVANSLSASGEFVGLNAKGIGRQRKHASVSSPFVQACFSNPGTSFIKA 824
K +L HL L+ANS++ +G VG NA GI + +V PF +A P F +A
Sbjct: 1187 MVTKGVLKDHLVLLANSMTCAGNLVGFNAGGIKALSRSLNVQIPFTEATLFTPRKCFERA 1246
Query: 825 AKSGVLDDLQGCLDALAWGKCMSMGTSGQFDIMHSEKVEEF--PESADVYSLL 875
A+ +D L + + +WGK +++GT +F+++ + + E+ P++ DVYS L
Sbjct: 1247 AEKCHVDSLSSIVASCSWGKHVAVGTGSRFEVLLNTRNVEWNIPDTRDVYSFL 1299
>M0SC38_MUSAM (tr|M0SC38) DNA-directed RNA polymerase OS=Musa acuminata subsp.
malaccensis PE=3 SV=1
Length = 1433
Score = 242 bits (617), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 234/887 (26%), Positives = 394/887 (44%), Gaps = 118/887 (13%)
Query: 14 VVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNLLSLSQD 73
V INPL C+PL DFDGDC+H + PQS++A+ E+ EL ++++QL++ SG L L QD
Sbjct: 228 TVKINPLICAPLGADFDGDCVHIFYPQSLSAKAEVLELFSVEKQLLSSHSGSLNLQLVQD 287
Query: 74 SLTAAYMLMEDGVLLNLYEIQQLQMLCDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPS 133
+ A ++ + G + QQL M L PPP+I+KA ++ W+ Q+ + P+
Sbjct: 288 ASLALKLIFKSG-FIKKEVAQQLGMYVSSML-PPPAIVKA-TKCGPCWTILQVLQNVFPA 344
Query: 134 NFDYSFPPNGVSVSDGELTSSFESSGWLRDSECNIFQRLVERFQD---------KTLNLL 184
D S GE ES D++ ++ Q L+ + LN
Sbjct: 345 FLDCS----------GERYFIRESEILELDTDQDVVQSLLTDIMTHIYHMKGPMEVLNFF 394
Query: 185 YDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGLQEAEQACDFNQLLVDHY 244
Q +L E L M GF + ++ EI +Q+ +C NQL
Sbjct: 395 NYIQPLLMEMLFMEGFSICLKDFILS------KAVVSEIQGSIQK--NSCILNQLR---- 442
Query: 245 CDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHMFRNIQSLVDKYASKGNA 304
S +D + L + H+ R+++ + K+ +A
Sbjct: 443 ------SRRD-------ERAELQVQNHL----------------RSMKDPIVKFILNSSA 473
Query: 305 FLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCAAWNSEKGLNSMPMFSNT 364
+ + S +++K+V+ LGLQ L R L + + +S +
Sbjct: 474 LGNLIDSKSDSSMVKVVEQLGFLGLQ--LFDQGKYYSRALVDDCFLNFVSKHSAGEVDHP 531
Query: 365 LKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNADL--PGTLTRRLMFFMRD 422
++ + +V++SF GLNP E H++++R+ + L PGTL + LM +RD
Sbjct: 532 SEA------YGLVKNSFFHGLNPYEMLVHAISSREVIVRSSRGLTEPGTLFKNLMAILRD 585
Query: 423 LYQAYDGTVRNLYGNQLIQFSY-DTDKDSSCDSGFQEGTVGGEPVGALSACAISEAAYSA 481
+ YDG+VRN+ L+Q Y D + +S ++ G+PVG L+A AIS AY A
Sbjct: 586 VVICYDGSVRNVCTGSLVQLEYVDDEGVNSVNT-----PPAGDPVGVLAATAISNLAYKA 640
Query: 482 LGQPISLLETSPLLN-----LKNVLECGSRKKS--GDQTVSLFLSDKLGKQRYGFEYAAL 534
+ L++S N +K +L C K+ D+ V L+L+D ++R+ E AA
Sbjct: 641 V------LDSSQSNNSSWELMKEILLCKVSYKNDVSDRRVILYLNDCCCQKRFCKENAAF 694
Query: 535 EVKNYLERVMFSDIVSTVMIMFTPQ---SSSLEIFNPWVCHFHLDKEIVARRKLTVHSVI 591
V N L+RV D +I + Q S + V H HLDK + + ++
Sbjct: 695 TVLNCLKRVTLKDCAHEFLIEYQKQIGVCDSSVTTSGLVGHIHLDKMQLKLLNINPDDIL 754
Query: 592 ---ESLYRRYESLTKESKVTFPNLKISSNRKCS-KEGGYASLNKEKEDVDCISVTIVESS 647
+++ Y + F + +S+ + CS K+ +L + C+ + +++
Sbjct: 755 HKCQAVIFSYGKKKGQLSHFFRRIFLSTCKCCSIKQPSDGNLCH----LPCLQFSYADAN 810
Query: 648 RSSAKLEAVRDLMI------PFLLGTVIKGFLEIKKVDILWSNRSKVSNSYAGSS----- 696
S + R + + P LL T++KG + +V I+W + S+ GSS
Sbjct: 811 ASQNNISLERAIHVMSETICPILLDTIVKGDPRVHEVKIVWIGPD--ATSWVGSSCKTLK 868
Query: 697 GELYLRVTMSSDG--DSGRFWGVLINHCHRIMPMIDWTRSHPDNIHHFCSAYGIDAGRQY 754
G+L L V + D SG W +++ C +M +ID RS P I GI
Sbjct: 869 GDLGLEVVLGQDAVRQSGDAWRTVLDACLPVMHLIDTGRSIPYGIQQIQEVLGISCAFDQ 928
Query: 755 FLHSLASATTETGKSILPKHLHLVANSLSASGEFVGLNAKGIGRQRKHASVSSPFVQACF 814
+ L+ + K ++ +HL LVANS++ +G+ +G N G + V PF A
Sbjct: 929 AVQRLSKSIKMVSKGVMKEHLLLVANSMTCTGKLIGFNTGGYKALFRSFKVEVPFTAATL 988
Query: 815 SNPGTSFIKAAKSGVLDDLQGCLDALAWGKCMSMGTSGQFDIMHSEK 861
P F +AA+ +D L + + +WGK +++GT F I+ +K
Sbjct: 989 FTPMKCFERAAEKCQVDSLASVVSSCSWGKNVAIGTGAPFQILWDKK 1035
>A9SIR4_PHYPA (tr|A9SIR4) DNA-directed RNA polymerase OS=Physcomitrella patens
subsp. patens GN=NRPDA1502 PE=3 SV=1
Length = 1795
Score = 241 bits (616), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 219/817 (26%), Positives = 356/817 (43%), Gaps = 127/817 (15%)
Query: 14 VVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNLLSLSQD 73
+++NPL C P DFDGD H + PQS+ A EL++L+A+ +Q+I+ G+ LL L+QD
Sbjct: 687 TITVNPLICPPFSADFDGDIFHIFAPQSLQAIAELDQLMAVKQQVISEHGGQPLLELTQD 746
Query: 74 SLTAAYMLMEDGVLLNLYEIQQLQMLCDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPS 133
+L AA++L + L+ + QL + KK P +I+K+P + W+G+Q+F++ LP
Sbjct: 747 TLLAAHLLTSKKLFLDKATMDQLCLWASKK-PPEAAILKSP-KGGPFWTGEQVFALTLPE 804
Query: 134 NFDYSFPPNGVSVSDGELTSSFESSGWLRDSECNIFQRLVERFQDKTL-NLLYDAQKVLC 192
+F+ P V + GE+ + LR ++ L + L + L A VL
Sbjct: 805 DFELGAPQEEVFIQGGEIIRWRNGTKLLRKGNDSVAAALCVQLGPVALVDYLNTATGVLH 864
Query: 193 EWLSMTGFXXXXXXXXXXXXXCARENMMEEI--SYGLQEAEQACDFNQLLVDHYCDFLSG 250
WL + GF R+ M++ I L+ +++CDF ++L D L
Sbjct: 865 TWLQVQGFSTGLTDFQVTPNRTKRQEMLKSILEESFLKSIQESCDFVRIL-DAKVQAL-- 921
Query: 251 SLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHMFRNIQSLVDKYASKGNAFLTMFK 310
DSD S + + N L +V+ + F+ +V KYA + N+ L M +
Sbjct: 922 ---DSDENPSPESLTKNIR-----FLEQVAREIFQKRRSEAGRIVAKYAEQRNSLLMMVE 973
Query: 311 AGSKGNLLKLVQHSMCLGL-----QHSLVRLSYRMPREL--SCAAWNSEKGLNSMPMFSN 363
+GSKG++ KL+Q +GL QH L S R P S W + GL
Sbjct: 974 SGSKGSMEKLLQQIAGMGLQLYKGQHLLSYSSSRRPAMTYSSQLDWWEDMGL-------- 1025
Query: 364 TLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNADL--PGTLTRRLMFFMR 421
V SS + GL E F H +A+R + ++ PGTL + LMFF+R
Sbjct: 1026 -------------VRSSLVDGLKANELFRHVIADRTGILRKHVEVVQPGTLFKALMFFLR 1072
Query: 422 DLYQAYDGTVRNLYGNQLIQFSYDTDKDSSCDSGFQEGT---------------VGGEPV 466
DL+ YDG+VR+ LIQF Y + S E T + GEPV
Sbjct: 1073 DLHIMYDGSVRSQCSKNLIQFCYGGARGSLIPRKPTEETLAWEEDDHRRWPLSVLAGEPV 1132
Query: 467 GALSACAISEAAYSALGQPISL---LETSPLLNLKNVLECGSRK--KSGDQTVSLFLSDK 521
G L+A AIS+ AY + SL + PL ++ L + K D+ V L L
Sbjct: 1133 GVLAAAAISQPAYELMLDAPSLNGPFKPRPLNLIQETLYPREKSSLKPTDRCVVLRLVHC 1192
Query: 522 LGKQRYGFEYAALEVKNYLERVMFSDIVSTVMIMF---------TPQSSSLEIFNPWVCH 572
+ E LEV+ +L+R+ + +V + + P + + +PW+ H
Sbjct: 1193 ECTESLCLERRVLEVQAHLKRINLRMMAESVAVEYWNMEDSRAAGPSGDLVRLGSPWLGH 1252
Query: 573 FHLDKEIVARRKLTVHSVIESLYRRYESLT-------KESKVTF---------------- 609
+L ++ + + ++ V +++ L +++ K ++ F
Sbjct: 1253 INLSQDAMKQCEVNVEDIVKRLCQKFSQTAGYVLKKNKMGQIFFCHSYNCSFSNGYCLHF 1312
Query: 610 -PNLKISSNRKCSKEGGYASLNKEKEDVDCISVTIVESSRSSAKLEAVRDLMIPFLLGTV 668
P+L I R CS E Y NK D+ L +++ +IP LL
Sbjct: 1313 SPSLPIKM-RHCSNEDRY---NKALLDL----------------LLRIQETIIPGLLDCT 1352
Query: 669 IKGFLEIKKVDILWSNRSKVS--NSYAGSSG----ELYLRVTM--SSDGDSGRFWGVLIN 720
+KG I+ V ++ + + +A +G EL L V + SS G W +
Sbjct: 1353 MKGDERIETVRVVCEGPASTTWHRRFAHCTGNLDEELVLEVYVSPSSSKSRGMAWASVKQ 1412
Query: 721 HCHRIMPMIDWTRSHPDNIHHFCSAYGIDAGRQYFLH 757
C + ++DW RS P +I + GI+ Q +
Sbjct: 1413 ACVSLKDLVDWNRSMPYSIQEIRCSLGIEVAYQIVVQ 1449
>K3YP74_SETIT (tr|K3YP74) DNA-directed RNA polymerase OS=Setaria italica
GN=Si016066m.g PE=3 SV=1
Length = 2050
Score = 236 bits (601), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 234/887 (26%), Positives = 374/887 (42%), Gaps = 112/887 (12%)
Query: 14 VVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNLLSLSQD 73
V INPL CSP DFDGDC+H Y PQS+AA+ E EL ++++QLI+ SG+ L L D
Sbjct: 442 TVKINPLMCSPFSADFDGDCVHIYYPQSLAAKAEALELFSVEKQLISSHSGQVNLQLGND 501
Query: 74 SLTAAYMLMEDGVLLNLYEIQQLQMLCDKKLTPPPSIIKA-PSRNNSLWSGKQLFSMLLP 132
SL A M +L+ QL M L P P++IK+ P+ W+ Q+ LP
Sbjct: 502 SLVA-MKAMSSRTMLSKELANQLAMFVPFSL-PAPAVIKSIPA-----WTITQIVQGALP 554
Query: 133 SNFDYSFPPNGVSVSDGELTSSFESSGWLRDSECNIFQR-LVERFQDKTLNLLYDAQKVL 191
+ + V DG + ++DS ++ L E+ + L L Q +L
Sbjct: 555 AKLTCQGKTH--LVRDGNIIKLDLDKDHVQDSFNDLVSSVLSEKGPGEALQFLNVLQPLL 612
Query: 192 CEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGLQEAEQACDFNQLLVDHYCDFLSGS 251
E+L + GF + ++EE+ +Q+ Q L+
Sbjct: 613 MEFLLLDGFSVTLKDFN------VPKAILEEVHKNIQK--------QSLI---------- 648
Query: 252 LQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHMFRNIQSLVDKYASKGNAFLTMFKA 311
L + + ++E+ V+ + + ++ + ++ K + +
Sbjct: 649 --------------LEQSRFSKSQIAEMRVE---NNLKGVKQQISEFVIKCSDLGLLIDP 691
Query: 312 GSKGNLLKLVQHSMCLGLQ--HSLVRLSYRMPRELSCAAWNSEKGLNSMPMFSNTLKSIQ 369
+ ++ K+VQ +GLQ H S R+ + F N I
Sbjct: 692 KKEASMSKVVQQLGFVGLQLYHEGKLYSSRLVEDC-------------FSNFVNKHSDIG 738
Query: 370 CYIP---HAVVESSFLTGLNPLECFAHSVANRDSSFSDNADL--PGTLTRRLMFFMRDLY 424
P + +V+SS+ GLNP E HS++ R++ + L PGTL + LM +RD+
Sbjct: 739 DEHPPEAYGLVQSSYFHGLNPYEELVHSISTREAIVRSSRGLTEPGTLFKNLMAILRDVV 798
Query: 425 QAYDGTVRNLYGNQLIQFSYDTDKDSSCDSGFQEGTVGGEPVGALSACAISEAAYSALGQ 484
YDGTVRN N +IQ Y D ++ F GEPVG L+A AIS AY A+
Sbjct: 799 ICYDGTVRNTCSNSIIQLKYKEDDETD----FPSALPPGEPVGVLAATAISTPAYRAVLD 854
Query: 485 PISLLETSPLLNLKNVLEC--GSRKKSGDQTVSLFLSDKLGKQRYGFEYAALEVKNYLER 542
S + ++K +L+ G + D+ V LFL+D +++ E AAL V++ L R
Sbjct: 855 S-SQSNNASWESMKEILQTKVGYKNDMKDRKVILFLNDCSCPKKFCKERAALTVQSCLRR 913
Query: 543 VMFSDIVSTVMIMFTPQSSSLEIFN---------------PWVCHFHLDKEIVARRKLTV 587
V +D + + I Q + IF V H HLDK + R ++
Sbjct: 914 VTLADCATDISIEGERQKYVVCIFRHQKQINLDETSEAAPTLVGHIHLDKAQLERINIST 973
Query: 588 HSVI---ESLYRRYESLTKESKVTFPNLKISSNRKCSKEGGYASLNKEKEDVDCISV--- 641
++ E + RY F + S+ C +++ C+
Sbjct: 974 QDILQKCEEISGRYGKKKGHLCHLFKKITFST---CDCSFAQNTIDGYLHVAPCVQFSFS 1030
Query: 642 ---TIVESSRSSAKLEAVRDLMIPFLLGTVIKGFLEIKKVDILW---SNRSKVSNSYAGS 695
TI+ S A + + D + LL T+IKG I+ I+W S V N+
Sbjct: 1031 DDNTILSESVERA-VNVIADSVCSVLLDTIIKGDPRIQSAKIIWVESEATSWVKNTQNTL 1089
Query: 696 SGELYLRVTMSSDG--DSGRFWGVLINHCHRIMPMIDWTRSHPDNIHHFCSAYGIDAGRQ 753
GE L + + D +G W +++ C ++ +ID RS P I GI
Sbjct: 1090 KGEPTLEIIVEKDEAVRNGYAWRTVMDACIPVLNLIDTRRSIPYGIQQVKELLGISCAFD 1149
Query: 754 YFLHSLASATTETGKSILPKHLHLVANSLSASGEFVGLNAKGIGRQRKHASVSSPFVQAC 813
+ L++ K +L HL LVANS++ +G +G N G + V PF ++
Sbjct: 1150 QVVQRLSTTVKMVAKGVLKDHLILVANSMTCTGNLIGFNTSGYKATFRSLKVQVPFTEST 1209
Query: 814 FSNPGTSFIKAAKSGVLDDLQGCLDALAWGKCMSMGTSGQFDIMHSE 860
P F KAA+ D L + + +WGK ++GT F I+ +E
Sbjct: 1210 LFTPMKCFEKAAEKCDSDSLGCVVSSCSWGKHAAIGTGSSFQILWNE 1256
>Q1L5X7_SOLLC (tr|Q1L5X7) DNA-directed RNA polymerase (Fragment) OS=Solanum
lycopersicum GN=RPE1 PE=2 SV=1
Length = 1127
Score = 231 bits (590), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 232/879 (26%), Positives = 371/879 (42%), Gaps = 106/879 (12%)
Query: 28 DFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVL 87
DFDGDC+H + PQS++A+ E+ EL A+ +QL++ +G L+ DSL + LM
Sbjct: 1 DFDGDCVHLFYPQSLSAKAEVLELFAVGKQLLSSHTGNFNSQLATDSLLS-LKLMFSHYF 59
Query: 88 LNLYEIQQLQMLCDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFDYSFPPNGVSVS 147
+ QQL M L P S + ++ ++W+ Q+ LP FD + +
Sbjct: 60 FDKAAAQQLAMFLPMAL--PDSAVVDVRKSGAMWTTLQILGAALPDGFDSCGETHTIG-- 115
Query: 148 DGELTSSFESSGWLRDSECNIFQRLVE-----RFQDKTLNLLYDAQKVLCEWLSMTGFXX 202
S F + RD +I ++ + + L Q +L E L GF
Sbjct: 116 ----KSQFLGIDYHRDLISSILNDVITSIYFMKGPNDVLKFFNSLQPLLMENLCTEGFSI 171
Query: 203 XXXXXXXXXXXCARENMMEEISYGLQEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASID 262
M + + G+QE Q ++LL
Sbjct: 172 SLRDFY----------MTKAVRDGIQERIQC--MSKLL---------------------- 197
Query: 263 MDSLNYEKHISAALSEVSVDAFRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQ 322
H+ ++ +E H RN + V + K + + + S+ K+VQ
Sbjct: 198 -------HHLRSSYNESVEVQLEHHLRNEKLPVIDFVLKSSGMGVLIDSKSESAFNKVVQ 250
Query: 323 HSMCLGLQHSLVRLSYRMPRELSCAAWNSEK----GLNSMPMFSNTLKSIQCYIPHAVVE 378
LGLQ S Y A +K G N F +V
Sbjct: 251 QIGFLGLQISDRGKFYXXTLVHDMAQLFQKKYPSVGTNPSEEF-------------GLVR 297
Query: 379 SSFLTGLNPLECFAHSVANRDSSFSDNADL--PGTLTRRLMFFMRDLYQAYDGTVRNLYG 436
S GL+P + HS+++R+ L PGTL LM +RD+ YDGTVRN+
Sbjct: 298 SCLFYGLDPYQGMIHSISSREVIVRSTRGLTEPGTLFXNLMAILRDVVICYDGTVRNVSS 357
Query: 437 NQLIQFSYDTDKDSSCDSGFQEGTVGGEPVGALSACAISEAAYSALGQPISLLETSPLLN 496
N +IQF Y + S+ S F G+PVG L+A A+S AY A +S +
Sbjct: 358 NSIIQFEYGSSGGSNLPSEF----CAGDPVGVLAATAMSNPAYKAXLDSSPSSNSSWEM- 412
Query: 497 LKNVLECGSRKKS--GDQTVSLFLSDKLGKQRYGFEYAALEVKNYLERVMFSDIVSTVMI 554
+K +L CG K+ D+ V L+L+D ++ Y E AA VKN+L +V D +I
Sbjct: 413 MKEILLCGVSFKNDVSDRRVILYLNDCGCRRGYCREKAAYVVKNHLSKVCLKDAADEFLI 472
Query: 555 MFTPQSSSLE---IFNPWVCHFHLDKEIVARRKLTVHSVIESLYRRYESLTKESKVT--F 609
+ + + E + H L++ + ++V V E S + K+ F
Sbjct: 473 EYAGRQAGYENSETGTGLIGHIRLNQGQLENLGISVLEVHERCQENISSFRXKKKIGNLF 532
Query: 610 PNLKISSNRKCS--KEGGYASLNKEKEDVDCISVTIVESSRSSAKLEAVR----DLMIPF 663
+ +S + CS G LN C+ + ++S LE V D++ P
Sbjct: 533 KRIVLSVSEFCSFCHNSGSKCLN-----APCLRFSWPDASDD--HLERVSHILADMIXPI 585
Query: 664 LLGTVIKGFLEIKKVDILW---SNRSKVSNSYAGSSGELYLRVTMSSDG--DSGRFWGVL 718
LL TVIKG + +I W S + + GEL L + + + G W L
Sbjct: 586 LLDTVIKGDPRVSSANIAWISPDTMSWIRSPSKSQRGELALDIVLEKEAVKXRGDAWRXL 645
Query: 719 INHCHRIMPMIDWTRSHPDNIHHFCSAYGIDAGRQYFLHSLASATTETGKSILPKHLHLV 778
++ C ++ +ID TRS P I GI + + L+++ T K +L HL L+
Sbjct: 646 MDSCLPVIHLIDTTRSIPYAIKQVQELIGISCAFEQAVXRLSTSVTMVTKGVLKDHLVLL 705
Query: 779 ANSLSASGEFVGLNAKGIGRQRKHASVSSPFVQACFSNPGTSFIKAAKSGVLDDLQGCLD 838
ANS++ +G VG NA GI + +V PF +A P F +AA+ +D L +
Sbjct: 706 ANSMTCAGNLVGFNAGGIKALSRSLNVQIPFTEATLFTPRKCFERAAEKCHVDSLSSIVA 765
Query: 839 ALAWGKCMSMGTSGQFDIMHSEKVEEF--PESADVYSLL 875
+ +WGK +++GT +F+++ + + E+ P++ DVYS L
Sbjct: 766 SCSWGKHVAVGTGSRFEVLLNTRNVEWNIPDTRDVYSFL 804
>M8BMS2_AEGTA (tr|M8BMS2) DNA-directed RNA polymerase II subunit RPB1-B OS=Aegilops
tauschii GN=F775_02057 PE=4 SV=1
Length = 2017
Score = 230 bits (586), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 231/885 (26%), Positives = 367/885 (41%), Gaps = 121/885 (13%)
Query: 14 VVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNLLSLSQD 73
V INPL CSPL DFDGDC+H Y PQS+AA+ E EL ++++QL N +G+ L L+ D
Sbjct: 536 TVKINPLICSPLAADFDGDCVHIYYPQSLAAKAEALELFSVEKQLTNSHNGKVNLQLAND 595
Query: 74 SLTAAYMLMEDGVLLNLYEIQQLQMLCDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPS 133
SL A M +L+ QL ML L PPP+++K+ W+ Q+ LP+
Sbjct: 596 SLL-ALKHMSSRTMLSKESANQLAMLLSLSL-PPPAVVKS----KPCWTIAQIMQSALPA 649
Query: 134 NF---------------DYSFPPNGVSVSDGELTSSFESSGWLRDSECNIFQRLVERFQD 178
V S +L SS L +
Sbjct: 650 ELTCEGDRFLVRDSTVIKLDIDKESVQASFSDLVSSI----------------LAVKGPG 693
Query: 179 KTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGLQEAEQACDFNQ 238
L L Q +L E+L + GF + L E Q C Q
Sbjct: 694 DALKFLNALQPLLMEFLLLDGFSVSLQDFS--------------VPKPLLEEAQECIKKQ 739
Query: 239 LLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHMFRNIQSLVDKY 298
LV L + S+ E VD + ++++ + +
Sbjct: 740 SLV------------------------LEQSRCSSSQSVETRVD---NNLKDVKQQIADF 772
Query: 299 ASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCAAWNSEKGLNSM 358
K + + S ++ K+VQ +G Q L R R L ++S +N
Sbjct: 773 VVKSSRLGLLIDPKSDSSVSKVVQQLAFVGPQ--LYREGKFYSRRLVDDCFSS--FVNRH 828
Query: 359 PMFSNTLKSIQCYIPHA--VVESSFLTGLNPLECFAHSVANRDSSFSDNADL--PGTLTR 414
P + ++ + P A +V+S++ GLNP E HS+ R++ + L PGTL +
Sbjct: 829 PPIEDGVQ----HPPEAYGLVQSAYFHGLNPYEELVHSICTRETIVRSSRGLTEPGTLFK 884
Query: 415 RLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTDKDSSCDSGFQEGTVGGEPVGALSACAI 474
LM +RD+ YDGTVRN+ N ++Q Y + D+ F GEPVG L+A AI
Sbjct: 885 SLMAILRDVVICYDGTVRNICSNSIMQLKYKEEDDTD----FPSAIAPGEPVGVLAATAI 940
Query: 475 SEAAYSALGQPISLLETSPLLNLKNVLEC--GSRKKSGDQTVSLFLSDKLGKQRYGFEYA 532
S AY + TS L +K +L+ + + D+ V LFL+D +++ E A
Sbjct: 941 SNPAYKTVLDSSQSNNTSWEL-MKEILKTKVSYKNDAKDRKVILFLNDCSCPKKFCKEKA 999
Query: 533 ALEVKNYLERVMFSDIVSTVMIMFTPQSS--SLEIFNP-WVCHFHLDKEIVARRKLTVHS 589
A+ V+ L+RV D + + I + Q S ++ P +V H HL+K + + ++
Sbjct: 1000 AIAVQGCLKRVTLEDCATDICIEYKKQVSLDAISEATPAFVGHIHLEKAHLEKINVSTDE 1059
Query: 590 VIESLYRRYESLTKE--------SKVTFPNLKISSNRKCSKEGGYASLNKE-KEDVDCIS 640
+++ + K+TF S +K +G L ED+ +S
Sbjct: 1060 ILQKCQEVSGKHANKKGTLGHLFKKITFSTCDCSFAQK-PGDGKVPCLQFSFSEDIPMLS 1118
Query: 641 VTIVESSRSSAKLEAVRDLMIPFLLGTVIKGFLEIKKVDILW---SNRSKVSNSYAGSSG 697
++ ++ + + D + LL +IKG +++ I W S V ++ S G
Sbjct: 1119 DSVEKA------VNVLADSLCGVLLEIIIKGDPRVQEAKITWVGSDATSWVKHTKKISKG 1172
Query: 698 ELYLRVTMSSDG--DSGRFWGVLINHCHRIMPMIDWTRSHPDNIHHFCSAYGIDAGRQYF 755
E + + + +G W + ++ C +M +ID RS P I GI
Sbjct: 1173 EPAVEIIVEKKEAMQNGDAWRIAMDACIPVMNLIDTQRSIPYGIQQVRELLGISCSFDQV 1232
Query: 756 LHSLASATTETGKSILPKHLHLVANSLSASGEFVGLNAKGIGRQRKHASVSSPFVQACFS 815
+ L+ K IL HL LVANS++ +G G + G + V PF +A
Sbjct: 1233 VQRLSKTMKTVAKGILKDHLVLVANSMTCTGNLNGFHNGGYRATFRSLKVQVPFTEATLL 1292
Query: 816 NPGTSFIKAAKSGVLDDLQGCLDALAWGKCMSMGTSGQFDIMHSE 860
P F KAA+ D L + + +WGK ++GT F I+ +E
Sbjct: 1293 TPMKCFEKAAEKCHSDSLGSVVSSCSWGKHAALGTGSSFQILWNE 1337
>J3L9M9_ORYBR (tr|J3L9M9) DNA-directed RNA polymerase OS=Oryza brachyantha
GN=OB02G13460 PE=3 SV=1
Length = 2034
Score = 224 bits (572), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 236/869 (27%), Positives = 369/869 (42%), Gaps = 88/869 (10%)
Query: 14 VVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNLLSLSQD 73
V INPL CSP DFDGDC+H Y PQS+AA+ E EL ++++QL + SG+ L L+ D
Sbjct: 482 TVKINPLICSPFAADFDGDCVHIYYPQSLAAKAEALELFSVEKQLTSSHSGKVNLQLAND 541
Query: 74 SLTAAYMLMEDGVLLNLYEIQQLQMLCDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPS 133
SL A M +L+ QL M L P P++IK+ W+ Q+ LP
Sbjct: 542 SLLA-LKHMSFRTILSKEVANQLAMNVTYSL-PKPALIKSRPH----WTIAQIVQGALPK 595
Query: 134 NFDYSFPPNGVSVSDGELTSSFESSGWLRDSECNIFQRLVERFQDKTLNLLYDAQKVLCE 193
+ S D L +RDS E Q +LLY
Sbjct: 596 DL--------TSQGDKHL---------VRDSTIIKLDLDKESVQTSFSDLLYST------ 632
Query: 194 WLSMTGFXXXXXXXXXXXXXCARENMMEEISYGLQEAEQACDFNQLLVDHYCDFLSGSLQ 253
LS+ G +++ S LQ DFN V LQ
Sbjct: 633 -LSVKGPGEALQFLNVLQPLLMELILLDGFSVSLQ------DFNVPKV---------HLQ 676
Query: 254 DSDNVASIDMDSLNYEKHISAA--LSEVSVDAFRHMFRNIQSLVDKYASKGNAFLTMFKA 311
++ +I+ S+ E+ A E+ VD + ++I+ + + K + +
Sbjct: 677 EAQK--NIEKQSIILEQSRCAENQFVEMRVD---NNLKDIKQQISDFVVKRSHLGLLIDP 731
Query: 312 GSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCAAWNSEKGLNSMPMFSNTLKSIQCY 371
S ++ K+VQ +GLQ L R R L +++ +N P S + Y
Sbjct: 732 KSDPSVSKVVQQLGFVGLQ--LYREGKFYSRRLVEDCFSN--FVNKHPAVRKE-HSPEAY 786
Query: 372 IPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNADL--PGTLTRRLMFFMRDLYQAYDG 429
+V SS+ GLNP E H+++ R++ + L PGTL + LM +RD+ YDG
Sbjct: 787 ---GLVRSSYFHGLNPYEELVHAISTREAIVRSSRGLTEPGTLFKNLMALLRDVVICYDG 843
Query: 430 TVRNLYGNQLIQFSYDTDKDSSCDSGFQEGTVGGEPVGALSACAISEAAYSALGQPISLL 489
TVRN+ +IQ Y ++ + D F GEPVG L+A AIS AY A+
Sbjct: 844 TVRNVCSKSIIQLKYK--EEDALD--FPSAIAPGEPVGVLAATAISNPAYKAVLDASQSN 899
Query: 490 ETSPLLNLKNVLECGSRKK--SGDQTVSLFLSDKLGKQRYGFEYAALEVKNYLERVMFSD 547
TS +K +L+ +R K + D+ + LFL+D +++ E AA+ V+ L R+ D
Sbjct: 900 NTS-WERMKEILQTTTRYKNDTKDRKIILFLNDCSCAKKFCKEKAAIAVQGCLRRITLED 958
Query: 548 IVSTVMIMFTPQSS---SLEIFNPWVCHFHLDKEIVARRKLTVHSVIESLYR---RYESL 601
+ + I + Q S + E V H H D+ + R +++ + + +Y
Sbjct: 959 CATDICIEYQKQISLDGTSEASPALVGHIHFDRAHLERINVSIEDIFQKCQEVSGKYGKK 1018
Query: 602 TKESKVTFPNLKISSNRKCSKEGGYASLNKEKEDVDCISVTIVESSRS-SAKLEAVRDLM 660
F N+ S C ++ + V C+ ES+ S +E +L+
Sbjct: 1019 KGHLSHLFKNITFSI---CDCSFTQKLIDGKLAKVPCLQFFFPESNTMLSESVEGAVNLL 1075
Query: 661 IP----FLLGTVIKGFLEIKKVDILW---SNRSKVSNSYAGSSGELYLRVTMSSDG--DS 711
LL T+IKG I++ I+W S V N+ S GE + + + +
Sbjct: 1076 ADSVCGVLLNTIIKGDPRIQEAKIVWVGSDATSWVKNTKKESKGEPAVEIIVEEQEALHT 1135
Query: 712 GRFWGVLINHCHRIMPMIDWTRSHPDNIHHFCSAYGIDAGRQYFLHSLASATTETGKSIL 771
G W + ++ C ++ +ID RS P I GI + L++ K +L
Sbjct: 1136 GDSWRITMDACIPVLDLIDTRRSIPYGIQQLRELLGISCAFDQVVQRLSTTVRMVAKDVL 1195
Query: 772 PKHLHLVANSLSASGEFVGLNAKGIGRQRKHASVSSPFVQACFSNPGTSFIKAAKSGVLD 831
HL LVANS++ +G G N G + V PF ++ P F KAA+ D
Sbjct: 1196 KDHLVLVANSMTFTGNLNGFNTAGYKTTFRSLKVQVPFTESTLITPMKCFEKAAEKCHSD 1255
Query: 832 DLQGCLDALAWGKCMSMGTSGQFDIMHSE 860
L + + +WGK + GT F I+ +E
Sbjct: 1256 SLGCVVSSCSWGKYAASGTGSSFQILWNE 1284
>Q0IZR2_ORYSJ (tr|Q0IZR2) Os09g0555200 protein (Fragment) OS=Oryza sativa subsp.
japonica GN=Os09g0555200 PE=4 SV=1
Length = 318
Score = 212 bits (539), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 116/301 (38%), Positives = 181/301 (60%), Gaps = 10/301 (3%)
Query: 728 MIDWTRSHPDNIHHFCSAYGIDAGRQYFLHSLASATTETGKSILPKHLHLVANSLSASGE 787
+IDW RS P+ ++ +YGID+ +YF+ SL S T G++I +HL +VA+ LS SG+
Sbjct: 1 LIDWERSRPERVYDIFCSYGIDSAWKYFVESLRSTTDAIGRNIHRQHLLVVADCLSISGQ 60
Query: 788 FVGLNAKGIGRQRKHASVSSPFVQACFSNPGTSFIKAAKSGVLDDLQGCLDALAWGKCMS 847
F GL+++G+ +QR S+SSPF +ACFS P SFI AAK +D+L G LDA+AWGK
Sbjct: 61 FHGLSSQGLKQQRAWLSISSPFSEACFSRPAYSFINAAKRDSVDNLSGALDAIAWGKEPC 120
Query: 848 MGTSGQFDIMHSEKVEEFPESADVYSLLIANFDQLNDKVDIPHYHNRSS--NKCDSEFSR 905
GTSG F +++S K ++ ++ ++Y L Q +K + Y R+ +K S FS
Sbjct: 121 AGTSGPFKVLYSGKSQKTKQNKNIYDFLHNPEVQALEKNFMDTYKQRTEKPSKQRSAFSS 180
Query: 906 K-----NGGYALKEYKQSKSFIRNFVTVNDIQKLAFESRSILSRYSIDQVISDHDKITML 960
K NGG K S + + + D++ +++L Y++++V+++ DK ++
Sbjct: 181 KGNATINGGTISVNQKFLDSKVGIWENIIDMRTCL---QNMLREYTLNEVVTEQDKSCLI 237
Query: 961 RVLHFHPRKNEKLGCGPADIKVGWHPVHKDSRCFHIIRSDESVEDFSYRKCILRALEIVD 1020
L FHPR +K+G G +IK+G +P H +SRCF + RSD++ DFSY KC+L A +
Sbjct: 238 EALKFHPRGYDKIGVGIREIKIGVNPGHPNSRCFIVQRSDDTSADFSYNKCVLGAANSIS 297
Query: 1021 P 1021
P
Sbjct: 298 P 298
>D7LEE8_ARALL (tr|D7LEE8) DNA-directed RNA polymerase OS=Arabidopsis lyrata subsp.
lyrata GN=ARALYDRAFT_483042 PE=3 SV=1
Length = 1947
Score = 206 bits (523), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 170/608 (27%), Positives = 284/608 (46%), Gaps = 46/608 (7%)
Query: 291 IQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCAAWN 350
++ + + K + + S + KLVQ + LGLQ S + Y
Sbjct: 666 VKEVAANFMLKSYSMRNLIDIKSNSAITKLVQQTGFLGLQLSDKKKFY------------ 713
Query: 351 SEKGLNSMPMF-SNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNADL- 408
++ + M +F I +V+ F GL+P E AHS+A R+ + L
Sbjct: 714 TKTLVEDMALFCKRKYGRISSSGDFGIVKGCFFHGLDPYEEMAHSIAAREVIVRSSRGLA 773
Query: 409 -PGTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTDKDSSCDSGFQEGTVGGEPVG 467
PGTL + LM +RD+ DGTVRN N ++QF+Y D + F+ GEPVG
Sbjct: 774 EPGTLFKNLMAVLRDIVITNDGTVRNTCSNSVVQFTYGVDSERGHQGLFE----AGEPVG 829
Query: 468 ALSACAISEAAYSALGQPISLLETSPLLNLKNVLECGS--RKKSGDQTVSLFLSDKLGKQ 525
L+A A+S AY A+ + +S +K VL C + + D+ V L+L++ +
Sbjct: 830 VLAATAMSNPAYKAVLDSTANSNSS-WEQMKEVLLCKVNFQNTTNDRRVILYLNECHCGK 888
Query: 526 RYGFEYAALEVKNYLERVMFSDIVSTVMIMFTPQSSSLEIFNPWVC---HFHLDKEIVAR 582
R+ E AA V+N L++V D ++ + Q + EIF C H HLDK ++
Sbjct: 889 RFCQENAAYTVRNKLKKVSLKDTAVEFLVEYRKQQTISEIFGIDSCLHGHIHLDKTLLQD 948
Query: 583 RKLTVHSVIESLYRRYESL--TKESKVT--FPNLKISSNRKCSKEGGYASLNKEKEDVDC 638
+++ +++ SL K+ K T F +S + CS + ++ D+ C
Sbjct: 949 WNISMQDILQKCEDVINSLGQKKKKKATDDFKRTSLSVSECCSFQD---PCGRKDSDMPC 1005
Query: 639 ISVTIVESSRSSAKLEAVRDLM----IPFLLGTVIKGFLEIKKVDILWSN---RSKVSNS 691
+ + S + LE D++ P LL TVIKG I +I+W++ + + N
Sbjct: 1006 L---MFSYSATDPDLERTLDVLCNTIYPVLLETVIKGDPRICSANIIWNSSDMTTWIRNC 1062
Query: 692 YAGSSGELYLRVTM--SSDGDSGRFWGVLINHCHRIMPMIDWTRSHPDNIHHFCSAYGID 749
+A GE L VT+ S+ SG W V+I+ C ++ +ID RS P +I G+
Sbjct: 1063 HASRRGEWVLDVTVEKSAVKQSGDAWRVVIDACLSVLHLIDTKRSIPYSIKQVQELLGLS 1122
Query: 750 AGRQYFLHSLASATTETGKSILPKHLHLVANSLSASGEFVGLNAKGIGRQRKHASVSSPF 809
+ + L+++ K +L +H+ L+AN+++ SG +G N+ G + ++ +PF
Sbjct: 1123 CAFEQAVQRLSASVRMVSKGVLKEHIILLANNMTCSGNMLGFNSGGYKALTRSLNIKAPF 1182
Query: 810 VQACFSNPGTSFIKAAKSGVLDDLQGCLDALAWGKCMSMGTSGQFDIMHSEKVEEF--PE 867
+A P F KAA+ D L + + +WGK + +GT QF+++ ++K E
Sbjct: 1183 TEATLITPRRCFEKAAEKCHTDSLSTVVGSCSWGKRVDVGTGSQFELLWNQKETGLDDKE 1242
Query: 868 SADVYSLL 875
DVYS L
Sbjct: 1243 ETDVYSFL 1250
Score = 94.0 bits (232), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 75/120 (62%), Gaps = 3/120 (2%)
Query: 13 SVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNLLSLSQ 72
+ V INPL CSPL DFDGDC+H + PQS++A+ E+ EL ++++QL++ +G+ +L +
Sbjct: 434 NTVKINPLMCSPLSADFDGDCVHLFYPQSLSAKAEVMELFSVEKQLLSSHTGQLILQMGC 493
Query: 73 DSLTAAYMLMEDGVLLNLYEIQQLQMLCDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLP 132
DSL + +++E GV L+ QQL M LT PP ++ S++ W+ Q+ + P
Sbjct: 494 DSLLSLRVMLE-GVFLDKATAQQLAMY--GSLTLPPPALRKSSKSGPAWTVFQILQLAFP 550
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 53/88 (60%), Gaps = 3/88 (3%)
Query: 928 VNDIQKLAFESRSIL--SRYSIDQVISDHDKITML-RVLHFHPRKNEKLGCGPADIKVGW 984
++D++ + R I+ S Y ISD DK +L ++L+FHP+K KLG G I V
Sbjct: 1740 LSDVEPVMRTLRKIMHPSAYPDGDPISDDDKTFVLEKILNFHPQKETKLGSGVDFITVDK 1799
Query: 985 HPVHKDSRCFHIIRSDESVEDFSYRKCI 1012
H + DSRCF ++ +D + +DFSYRK +
Sbjct: 1800 HTIFSDSRCFFVVSTDGAKQDFSYRKSL 1827
>M0XPZ5_HORVD (tr|M0XPZ5) DNA-directed RNA polymerase OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 1281
Score = 201 bits (511), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 147/500 (29%), Positives = 242/500 (48%), Gaps = 34/500 (6%)
Query: 374 HAVVESSFLTGLNPLECFAHSVANRDSSFSDNADL--PGTLTRRLMFFMRDLYQAYDGTV 431
H V +SF GLNP E HS++ R+ + + L PG L + +M +RD+ YDG++
Sbjct: 366 HGFVRNSFWNGLNPYEDLLHSISAREKTIRASKGLVEPGDLFKNMMAMLRDVVACYDGSI 425
Query: 432 RNLYGNQLIQFSYDTDKDSSCDSGFQEGTVGGEPVGALSACAISEAAYSALGQPISLLET 491
RN GN +I+F T+ SS G+PVG L+A A++ AAY A+ P T
Sbjct: 426 RNSCGNSIIKFDL-TNSSSS--------VTPGDPVGILAATAVTNAAYKAVLDPNQNNMT 476
Query: 492 SPLLNLKNVLECGSRKKSGDQTVSLFLSDKLGKQRYGFEYAALEVKNYLERVMFSDIVST 551
S + +L S + D+ + L+L+ + E A+L V+ L+R D +
Sbjct: 477 SWDSMKEVLLTRASSRNENDKKIILYLNKCSCGNNFCMERASLAVQACLKRTKVEDCATE 536
Query: 552 VMIMFTPQSSSLEIFNPWVCHFHLDKEIVARRKLTVHSVI----ESLYRRYESLTKESKV 607
I + Q +++ + V H HLDK+ + +++ ++ E +YR + + +++
Sbjct: 537 FSIQY--QQQNIQATHCLVGHIHLDKKQLDEMNISMEDILQKCQEEIYRCGKKKGQANQL 594
Query: 608 TFPNLKISSNRKCSKEGGYASLNKEKEDVDCISVTIVES-----SRSSAKL-EAVRDLMI 661
ISS C ++ +KE V C+ + ES S SSA++ + + + +
Sbjct: 595 MKRVAVISSECMCYQDA------DDKERVSCLQFFLTESVTTKMSESSARVVQMMANTIS 648
Query: 662 PFLLGTVIKGFLEIKKVDILWSNRSK---VSNSYAGSSGELYLRVTM--SSDGDSGRFWG 716
P LL T+IKG +++V+I+W + V NS GEL L VTM +S G+SG WG
Sbjct: 649 PILLDTMIKGDKRVQEVNIVWVEPQETCWVQNSGKEQKGELALVVTMDKNSTGESGDVWG 708
Query: 717 VLINHCHRIMPMIDWTRSHPDNIHHFCSAYGIDAGRQYFLHSLASATTETGKSILPKHLH 776
++ C +M +ID TRS P +I +GI + L+ A KS+L +H
Sbjct: 709 TAMDACIPVMDLIDTTRSVPYSIQQVQQVFGISSAFGRVTQHLSKAVGMVTKSVLEEHRT 768
Query: 777 LVANSLSASGEFVGLNAKGIGRQRKHASVSSPFVQACFSNPGTSFIKAAKSGVLDDLQGC 836
VA+S++ +G G N+ G K + +PF++A + P F + A+ D L
Sbjct: 769 TVASSMTCTGNLHGFNSYGYKATFKSLKIQAPFMKATLARPLQCFEEGAEKVYSDQLDSV 828
Query: 837 LDALAWGKCMSMGTSGQFDI 856
+ +WG +GT F I
Sbjct: 829 VSTCSWGNPAPIGTGSAFKI 848
Score = 66.6 bits (161), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 58/120 (48%), Gaps = 8/120 (6%)
Query: 14 VVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNLLSLSQD 73
+ INPL C PL DFDGDC+H + P+SV+AR E EL +++QL++ + + L D
Sbjct: 103 TIKINPLICGPLGADFDGDCVHIFFPRSVSARAEAMELFMVEKQLVSSHNEKLNFRLKND 162
Query: 74 SLTAAYMLMEDGVLLNLYEIQQL-QMLCDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLP 132
L A + G + E QL + L P + P WS Q+ +LP
Sbjct: 163 CLLALKKI--SGRKYSRREANQLMNAMFTGGLIPKKRLSGGPE-----WSFAQILETVLP 215
>M8C0F8_AEGTA (tr|M8C0F8) DNA-directed RNA polymerase II subunit RPB1 OS=Aegilops
tauschii GN=F775_23577 PE=4 SV=1
Length = 1600
Score = 201 bits (510), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 144/499 (28%), Positives = 242/499 (48%), Gaps = 34/499 (6%)
Query: 374 HAVVESSFLTGLNPLECFAHSVANRDSSFSDNADL--PGTLTRRLMFFMRDLYQAYDGTV 431
H V +S GLNP E HS++ R+ + + L PG L + +M +RD+ YDGT+
Sbjct: 694 HGFVRNSLCNGLNPYEDLLHSISAREKTIRASKGLVEPGVLFKNMMAMLRDVVACYDGTI 753
Query: 432 RNLYGNQLIQFSYDTDKDSSCDSGFQEGTVGGEPVGALSACAISEAAYSALGQPISLLET 491
RN GN +++F D+ SS G+PVG L+A A++ AAY A+ P +
Sbjct: 754 RNSCGNSVVKF--DSRNSSS-------SVTPGDPVGILAATAVTNAAYKAVLDP-NQNNM 803
Query: 492 SPLLNLKNVLEC-GSRKKSGDQTVSLFLSDKLGKQRYGFEYAALEVKNYLERVMFSDIVS 550
+ ++K VL S + DQ + L+L+ + E A+L V+ L+R D +
Sbjct: 804 ASWDSMKEVLLTRASSRNENDQKIILYLNKCSCGDNFCMERASLAVQACLKRTKVEDCAT 863
Query: 551 TVMIMFTPQSSSLEIFNPWVCHFHLDKEIVARRKLTVHSVIESLYRR-YESLTKESKVT- 608
I + Q +++ + V H HLDK+ + +++ +++ + Y K+ +V
Sbjct: 864 EFSIHY--QQQNIQATHCLVGHIHLDKKQLDEMNISMQGILQKCQKEIYRCGKKKGQVNQ 921
Query: 609 -FPNLKISSNRKCSKEGGYASLNKEKEDVDCI----SVTIVESSRSSAKL-EAVRDLMIP 662
+ ISS C ++ ++E V C+ + ++ S SSA++ + + + + P
Sbjct: 922 LMKRVVISSEYMCYQDA------DDEEQVSCLQFFLTKSVTTQSESSARVVQLMANTISP 975
Query: 663 FLLGTVIKGFLEIKKVDILWSNRSK---VSNSYAGSSGELYLRVTMSSD--GDSGRFWGV 717
LL T+IKG +++V+I+W+ V NS GEL L +TM D G+SG WG
Sbjct: 976 ILLDTIIKGDPRVQEVNIIWAEPQDTCWVQNSGTEQKGELALVITMDKDSTGESGDVWGT 1035
Query: 718 LINHCHRIMPMIDWTRSHPDNIHHFCSAYGIDAGRQYFLHSLASATTETGKSILPKHLHL 777
++ C +M +ID TRS P +I +GI + L+ A KS+L +HL
Sbjct: 1036 AMDACIPVMDLIDTTRSVPYSIQRVREGFGISSAFGRVTQHLSKAVGMVTKSVLEEHLTT 1095
Query: 778 VANSLSASGEFVGLNAKGIGRQRKHASVSSPFVQACFSNPGTSFIKAAKSGVLDDLQGCL 837
VA+S++ +G G N+ G K + +PF++A + P F + A+ D L +
Sbjct: 1096 VASSMTCTGNLHGFNSYGYKATFKALKIQAPFMKATRARPLQCFEEGAEKVYSDQLDSVV 1155
Query: 838 DALAWGKCMSMGTSGQFDI 856
+WG +GT F I
Sbjct: 1156 STCSWGNPAPIGTGSAFKI 1174
Score = 67.4 bits (163), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 59/126 (46%), Gaps = 20/126 (15%)
Query: 14 VVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNLLSLSQD 73
+ INPL C PL DFDGDC+H + P+SV+AR E EL +++QL++ + + L D
Sbjct: 431 TIKINPLICGPLGADFDGDCVHIFFPRSVSARAEAIELFTVEKQLVSSHNAKLNFQLKND 490
Query: 74 SLTA-------AYMLMEDGVLLNLYEIQQLQMLCDKKLTPPPSIIKAPSRNNSLWSGKQL 126
L A Y E LLN L + K+L+ P WS Q+
Sbjct: 491 CLLALKKMSARKYSRREANELLNAMFTAGL--IPKKRLSGRPE-----------WSFAQI 537
Query: 127 FSMLLP 132
+LP
Sbjct: 538 LETVLP 543
>M4C7I4_BRARP (tr|M4C7I4) DNA-directed RNA polymerase OS=Brassica rapa subsp.
pekinensis GN=Bra000162 PE=3 SV=1
Length = 2059
Score = 199 bits (505), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 151/525 (28%), Positives = 264/525 (50%), Gaps = 37/525 (7%)
Query: 375 AVVESSFLTGLNPLECFAHSVANRDSSFSDNADL--PGTLTRRLMFFMRDLYQAYDGTVR 432
+V+ F GL+P E AHSVA R+ + L PGTL + LM +RD+ DGTVR
Sbjct: 739 GIVKGCFFHGLDPYEEMAHSVAAREVIVRSSRGLAEPGTLFKNLMAVLRDIVITNDGTVR 798
Query: 433 NLYGNQLIQFSYDTDKDSSCDSGFQEGTVGGEPVGALSACAISEAAYSALGQPISLLETS 492
N N ++QF Y+ D+ F+ G+PVG L+A A+S AY A+ L++S
Sbjct: 799 NTCSNSIVQFKYELSSDNENQGLFE----AGDPVGVLAATAMSNPAYKAV------LDSS 848
Query: 493 PLLN-----LKNVLECGS--RKKSGDQTVSLFLSDKLGKQRYGFEYAALEVKNYLERVMF 545
P N +K VL C + + D+ V L+L++ ++Y E +A V+N L++V
Sbjct: 849 PNSNSSWELMKEVLLCKVNFQNTTNDRRVILYLNECRCGKKYCQENSAYTVRNKLKKVSL 908
Query: 546 SDIVSTVMIMFTPQSSSLEIFNPWVC---HFHLDKEIVARRKLTVHSVIESLYRRYESLT 602
D ++ + Q + EIF +C H HL+K ++ +++ +++ SL
Sbjct: 909 KDTAVEFLVEYRKQQAISEIFGMDICLHGHIHLNKTLLEGWNISMQDILQRCEDAINSLV 968
Query: 603 KESKVTFPN---LKISSNRKCSKEGGYASLNKEKEDVDCISVTIVESSRSSAK--LEAVR 657
++ K + + +S + CS G +S + D+ C+ + ++ + L+ +
Sbjct: 969 QKKKKKAEDFKKMNLSVSECCSFRGPGSSKDS---DMPCLMFSSYNATDPDLERTLDVLC 1025
Query: 658 DLMIPFLLGTVIKGFLEIKKVDILWSN---RSKVSNSYAGSSGELYLRVTM--SSDGDSG 712
+ + P LL TVIKG I +I+W++ + + + +A GE L VT+ S SG
Sbjct: 1026 NTIYPVLLETVIKGDPRIASANIIWNSPETTTWIRSRHASRRGEWVLDVTVEKSDVKQSG 1085
Query: 713 RFWGVLINHCHRIMPMIDWTRSHPDNIHHFCSAYGIDAGRQYFLHSLASATTETGKSILP 772
W V+I+ C ++ +ID RS P +I G+ + + L+++ + K +L
Sbjct: 1086 DAWRVVIDSCLSVLHLIDTKRSIPYSIKQVQELLGLSCAFEQAVQRLSASVRKVSKGVLK 1145
Query: 773 KHLHLVANSLSASGEFVGLNAKGIGRQRKHASVSSPFVQACFSNPGTSFIKAAKSGVLDD 832
+H+ LVAN+++ SG+ +G N+ G + ++ +PF +A P F KAA+ D
Sbjct: 1146 EHIILVANNMTCSGDMLGFNSGGYKALTRSLNIKAPFTEATLIAPRKCFEKAAEKCHKDS 1205
Query: 833 LQGCLDALAWGKCMSMGTSGQFDIMHSEKVE--EFPESADVYSLL 875
L + + +WGK + +GT QF+++ ++K E + DV+S L
Sbjct: 1206 LSTVVGSCSWGKRVDVGTGSQFELLWNKKETGLENDDETDVFSFL 1250
Score = 97.1 bits (240), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 76/120 (63%), Gaps = 3/120 (2%)
Query: 13 SVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNLLSLSQ 72
+ V INPL CSPL DFDGDC+H + PQS+ A+ E+ EL ++D+QL + +G+ +L L
Sbjct: 434 NTVKINPLMCSPLSADFDGDCVHLFYPQSLTAKAEVLELFSVDKQLRSSHTGQLILQLGL 493
Query: 73 DSLTAAYMLMEDGVLLNLYEIQQLQMLCDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLP 132
DSL + ++ME V L+ QQL M + L PPP+++K+ S++ W+ Q+ + P
Sbjct: 494 DSLLSLRVMMEQ-VFLDKASAQQLAMYGSRSL-PPPAVVKS-SKSGPAWTFFQILQLAFP 550
Score = 66.6 bits (161), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 54/88 (61%), Gaps = 3/88 (3%)
Query: 928 VNDIQKLAFESRSIL--SRYSIDQVISDHDKITML-RVLHFHPRKNEKLGCGPADIKVGW 984
++D+ + R I+ S Y+ + ISD DK +L ++L++HP K+ KLG G I V
Sbjct: 1862 LSDVDPVMRRLRKIMHQSGYTDGEPISDEDKTYVLEQILNYHPEKDAKLGPGLDFITVDK 1921
Query: 985 HPVHKDSRCFHIIRSDESVEDFSYRKCI 1012
H +SRCF ++ +D + +DFSYRKCI
Sbjct: 1922 HTTFTESRCFFVVSTDGTKQDFSYRKCI 1949
>Q5D868_SPIOL (tr|Q5D868) DNA-directed RNA polymerase (Fragment) OS=Spinacia
oleracea GN=NRPD1b PE=2 SV=1
Length = 1902
Score = 198 bits (504), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 173/635 (27%), Positives = 292/635 (45%), Gaps = 62/635 (9%)
Query: 271 HISAALSEVSVDAFRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQ 330
+ ++ +E+ F + R +S V + +A +M + S + K+VQ LGLQ
Sbjct: 448 QLRSSFNELVQVQFENHIREFKSPVGNFILISSALGSMIDSRSDSAIDKIVQQIGFLGLQ 507
Query: 331 HSLVRLSYRMPRELSCAAWNSEKGL--NSMPMFSNTLKSIQCYIPH--AVVESSFLTGLN 386
S R Y +GL + +F Y V F GL+
Sbjct: 508 LSDRRKFY-------------SRGLVEDVASLFHQKYPFADVYPSEEFGFVSRCFFHGLD 554
Query: 387 PLECFAHSVANRDSSFSDNADL--PGTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSY 444
P E HS+A R+ + L PGTL + LM +RD+ YDGTVRN+ N +IQF Y
Sbjct: 555 PYEEIVHSIATREVIVRSSKGLAEPGTLFKNLMAVLRDVVICYDGTVRNISSNSVIQFEY 614
Query: 445 DTDKDSSCDSGFQEGTV--GGEPVGALSACAISEAAYSALGQPISLLETSPLLN-----L 497
G Q + G+PVG L+A A+S AY A+ L++SP N +
Sbjct: 615 GV-------GGMQSQNLFPAGDPVGVLAATAMSNPAYKAV------LDSSPNSNSSWDMM 661
Query: 498 KNVLECGS--RKKSGDQTVSLFLSDKLGKQRYGFEYAALEVKNYLERVMFSDIVSTVMIM 555
K +L C + R D+ V L+L+D ++Y E A+ VKN+L++V D + I
Sbjct: 662 KEILFCRANFRNDINDRRVILYLNDCCCGRKYCQENASCLVKNHLKKVSLRDAAIELAIE 721
Query: 556 FTP---QSSSLEIFNPWVCHFHLDKEIVARRKLTVHSVIESLYRRYESLTKESKVT--FP 610
+ + S EI V H HL+ ++ + +H +++ + L K+ K F
Sbjct: 722 YKRPKLEPESCEIDAGLVGHIHLNSGLLKASGIGMHDILQKCEEQVNLLRKKKKYGYHFK 781
Query: 611 NLKISSNRKCSKEGGYASLNKEKEDVDCISVTIVESSRSSAKLEAVR----DLMIPFLLG 666
+ +S + C + + + D+ C+ + LE + D++ P LL
Sbjct: 782 RILLSVSDCCF----FNHSDSKWTDMPCL--KFFWQDMTDTDLERTKHIMADMICPVLLD 835
Query: 667 TVIKGFLEIKKVDILWSN---RSKVSNSYAGSSGELYLRVTMSSDGD--SGRFWGVLINH 721
T+IKG I V+I+W N + V + + + GEL + V + + +G W ++++
Sbjct: 836 TIIKGDPRISTVNIIWINPGTTTWVQSPCSSTKGELAVEVALEKEAVRLTGDAWRIVLDC 895
Query: 722 CHRIMPMIDWTRSHPDNIHHFCSAYGIDAGRQYFLHSLASATTETGKSILPKHLHLVANS 781
C + +ID RS P I +GI + L+++ T K +L +HL L+A+S
Sbjct: 896 CLPVFHLIDTRRSIPYAIKQIQDLFGISCAFDQAVQRLSTSVTMVTKGVLKEHLLLLASS 955
Query: 782 LSASGEFVGLNAKGIGRQRKHASVSSPFVQACFSNPGTSFIKAAKSGVLDDLQGCLDALA 841
++ +G VG N GI + +V PF +A P F +A++ +D L + + +
Sbjct: 956 MTCAGNLVGFNTSGIKALCRALNVQVPFTEATLYTPRKCFERASEKCHVDTLASIVGSCS 1015
Query: 842 WGKCMSMGTSGQFDIM-HSEKVEEFPESADVYSLL 875
WGK +S+GT +FD++ ++++E + DVY+ L
Sbjct: 1016 WGKRVSIGTGAKFDLLWETKEIEMADKPTDVYNFL 1050
Score = 89.4 bits (220), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 73/132 (55%), Gaps = 11/132 (8%)
Query: 14 VVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNLLSLSQD 73
VV INPL C PL DFDGDC+H + PQS++AR E+ EL ++++QL++ SG L LS D
Sbjct: 226 VVKINPLMCGPLAADFDGDCVHLFYPQSLSARAEVLELFSVEKQLLSSHSGNLNLQLSTD 285
Query: 74 SLTAAYMLMEDGVLLNLYEIQQLQMLCDKKLTPPPSIIKAPSRN---------NSLWSGK 124
SL + + E L+ QL M L P P++ KA S N W+ +
Sbjct: 286 SLLSLKTMFEV-YFLDRASANQLAMYA-SSLLPSPALWKACSSNAKKKKAHSSGPRWTAQ 343
Query: 125 QLFSMLLPSNFD 136
Q+ LPS+F+
Sbjct: 344 QVLQTALPSHFE 355
>K3Y4N1_SETIT (tr|K3Y4N1) DNA-directed RNA polymerase OS=Setaria italica
GN=Si009169m.g PE=3 SV=1
Length = 1546
Score = 197 bits (502), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 155/517 (29%), Positives = 248/517 (47%), Gaps = 32/517 (6%)
Query: 367 SIQCYIP---HAVVESSFLTGLNPLECFAHSVANRDS---SFSDNADLPGTLTRRLMFFM 420
S +CY P H VV+SSF GLNP E HS++ R+ S S PG L + +M +
Sbjct: 697 STKCYDPLKAHDVVKSSFYNGLNPYEELLHSISVREKIERSSSKGLAEPGNLFKNMMAIL 756
Query: 421 RDLYQAYDGTVRNLYGNQLIQFSYDTDKDSSCDSGFQEGTVGGEPVGALSACAISEAAYS 480
RD+ YDGT+R N ++QF TD SS G G+PVG L+A A++ AAY
Sbjct: 757 RDVIVCYDGTIRTSCSNSIVQFD-STDVSSSVTPG------PGDPVGILAATAVANAAYK 809
Query: 481 ALGQPISLLETSPLLNLKNVL--ECGSRKKSGDQTVSLFLSDKLGKQRYGFEYAALEVKN 538
A+ P TS L +K VL + S + DQ L+L + E AAL V++
Sbjct: 810 AVLDPNQNNMTSWDL-MKEVLLTKASSISDTIDQKEILYLDKCFCGFEFCMERAALRVQS 868
Query: 539 YLERVMFSDIVSTVMIMFTPQSSSLEIFNPWVCHFHLDKEIVARRKLTVHSVIE---SLY 595
L+R+ D + V I + P+++ + + V H HLDKE + R ++T +++ +
Sbjct: 869 CLKRIKIEDCATEVSIKYHPEAT--QAAHCLVGHIHLDKEQLNRMEITTEHILQKCQEVI 926
Query: 596 RRYESLTKESKVTFPNLKISSNRKCSKEGGYASLNKEKEDVDCISVTIVESSRSSAKLEA 655
++E +++ + + ++ S+ C + ++E V C+ V + S+ +
Sbjct: 927 SKHEKKSRQMRQIWKTTEMISSEYCLYDQDIG--DEEALQVSCLEVFLDTSTTTGLSESN 984
Query: 656 VRDLM----IPFLLGTVIKGFLEIKKVDILW---SNRSKVSNSYAGSSGELYLRVTMS-- 706
V LM P LL T+IKG ++ ++W + V NS A GEL L +T+
Sbjct: 985 VAHLMTNTIFPILLDTIIKGDPRVQDAKVIWIEPESTCWVQNSSAEQKGELALEITVEKV 1044
Query: 707 SDGDSGRFWGVLINHCHRIMPMIDWTRSHPDNIHHFCSAYGIDAGRQYFLHSLASATTET 766
+ +SG WGV ++ C +M +ID RS P NI +GI L+ A
Sbjct: 1045 AVAESGGTWGVAMDACVPVMDLIDTKRSMPYNIQEVHKVFGISCVFDRVTQHLSKAVGMV 1104
Query: 767 GKSILPKHLHLVANSLSASGEFVGLNAKGIGRQRKHASVSSPFVQACFSNPGTSFIKAAK 826
KS++ HL VA+S++ +G G N G + + +PF +A S P F K+A+
Sbjct: 1105 TKSVITDHLTTVASSMTCTGSLHGFNRSGYKATFQSLKIQAPFTEATLSRPMQCFRKSAE 1164
Query: 827 SGVLDDLQGCLDALAWGKCMSMGTSGQFDIMHSEKVE 863
D L + +WG ++GT F I ++++
Sbjct: 1165 KVDSDQLASVVSTCSWGNHAAIGTGSAFKIHWKDEIQ 1201
Score = 69.3 bits (168), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 43/68 (63%)
Query: 14 VVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNLLSLSQD 73
+ INPL C PL DFDGDC+H + P+SV+ARVE EL ++ QL+N + + + +D
Sbjct: 446 TIKINPLICGPLGADFDGDCVHIFFPRSVSARVEATELFTVENQLVNSHNAKLNFQIKED 505
Query: 74 SLTAAYML 81
L A ++
Sbjct: 506 YLLALKIM 513
>R0FV63_9BRAS (tr|R0FV63) Uncharacterized protein OS=Capsella rubella
GN=CARUB_v10022497mg PE=4 SV=1
Length = 1959
Score = 196 bits (497), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 167/580 (28%), Positives = 272/580 (46%), Gaps = 46/580 (7%)
Query: 319 KLVQHSMCLGLQHSLVRLSYRMPRELSCAAWNSEKGLNSMPMF-SNTLKSIQCYIPHAVV 377
KLVQ + LGLQ S + Y ++ + M +F I +V
Sbjct: 694 KLVQQTGFLGLQLSDKKKFY------------TKTLVEDMALFCKRKYGRISSSGDFGIV 741
Query: 378 ESSFLTGLNPLECFAHSVANRDSSFSDNADL--PGTLTRRLMFFMRDLYQAYDGTVRNLY 435
+ F GL+P E AHS+A R+ + L PGTL + LM +RD+ DGTVRN
Sbjct: 742 KGCFFHGLDPYEEMAHSIAAREVIVRSSRGLAEPGTLFKNLMAVLRDIVITNDGTVRNTC 801
Query: 436 GNQLIQFSYDTDKDSSCDSGFQEGTVGGEPVGALSACAISEAAYSALGQPISLLETSPLL 495
N ++QF Y D + F+ GEPVG L+A A+S AY A+ + +S L
Sbjct: 802 SNSVVQFKYGVDSERGHQGLFE----AGEPVGVLAATAMSNPAYKAVLDSTANSNSSWEL 857
Query: 496 NLKNVLEC--GSRKKSGDQTVSLFLSDKLGKQRYGFEYAALEVKNYLERVMFSDIVSTVM 553
+K VL C + + D+ V L+L++ +R+ E AA V+N L +V +
Sbjct: 858 -MKEVLLCKVNFQNNTNDRRVILYLNECRCGKRFCQENAACTVRNKLNKVSLKATAVEFL 916
Query: 554 IMFTPQSSSLEIFNPWVC---HFHLDKEIVARRKLTVHSVIESLYRRYESL--TKESKVT 608
+ + Q + EIF C H HL+K ++ +++ + + SL K+ K T
Sbjct: 917 VEYRKQQTISEIFGIDSCLHGHIHLNKTLLQDWNISMQDIHQKCEDVINSLGQKKKKKAT 976
Query: 609 --FPNLKISSNRKCSKEGGYASLNKEKEDVDCISVTIVESSRSSAKLEAVRDLM----IP 662
F +S + CS S + D+ C+ + + ++ LE D++ P
Sbjct: 977 DDFKRTSLSVSDCCSFRDPCGS---KDSDMPCL---MFSYNATNPDLERTLDVLCNTIYP 1030
Query: 663 FLLGTVIKGFLEIKKVDILWSN---RSKVSNSYAGSSGELYLRVTM--SSDGDSGRFWGV 717
LL TVIKG I +I+W++ + + N +A GE L VT+ S+ SG W V
Sbjct: 1031 VLLETVIKGDPRICSANIIWNSSDMTTWIRNRHASRRGEWVLDVTVEKSAVKQSGDAWRV 1090
Query: 718 LINHCHRIMPMIDWTRSHPDNIHHFCSAYGIDAGRQYFLHSLASATTETGKSILPKHLHL 777
+I+ C ++ +ID RS P +I G+ + + L+++ K +L +H+ L
Sbjct: 1091 VIDSCLSVLHLIDTKRSIPYSIKQVQELLGLSCAFEQAVQRLSASVKMVSKGVLKEHIIL 1150
Query: 778 VANSLSASGEFVGLNAKGIGRQRKHASVSSPFVQACFSNPGTSFIKAAKSGVLDDLQGCL 837
+AN+++ SG +G N+ G + ++ +PF +A P F KAA+ D L +
Sbjct: 1151 LANNMTCSGNMLGFNSGGYKALTRSLNIKAPFTEATLITPRKCFEKAAEKCHTDSLSTVV 1210
Query: 838 DALAWGKCMSMGTSGQFDIMHSEKVEEF--PESADVYSLL 875
+ +WGK + +GT QF+++ ++K E DVYS L
Sbjct: 1211 GSCSWGKRVDVGTGSQFELLWNQKETGLDDKEETDVYSFL 1250
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 76/120 (63%), Gaps = 3/120 (2%)
Query: 13 SVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNLLSLSQ 72
+ V INPL CSPL DFDGDC+H + PQS++A+ E+ EL ++D+QL++ +G+ +L +
Sbjct: 434 NTVKINPLMCSPLSADFDGDCVHLFYPQSLSAKAEVMELFSVDKQLLSSHTGQLILQMGC 493
Query: 73 DSLTAAYMLMEDGVLLNLYEIQQLQMLCDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLP 132
DSL + +++E V L+ QQL M L PPP++ K+ S++ W+ Q+ + P
Sbjct: 494 DSLLSLRVMLER-VFLDKATAQQLAMYGSLSL-PPPALRKS-SKSGPAWTVFQILQLAFP 550
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 928 VNDIQKLAFESRSIL--SRYSIDQVISDHDKITML-RVLHFHPRKNEKLGCGPADIKVGW 984
++D++ + R I+ S Y + ISD DK +L ++L+FHP K KLG I V
Sbjct: 1733 LSDVEPVMRTLRKIMHMSGYPDGEPISDDDKTFVLEKILNFHPEKERKLGSAVDFITVDK 1792
Query: 985 HPVHKDSRCFHIIRSDESVEDFSYRKCI 1012
H D+RCF ++ +D + +DFSYRK +
Sbjct: 1793 HTTFTDTRCFFVVSTDGAKQDFSYRKSL 1820
>M0WRB9_HORVD (tr|M0WRB9) DNA-directed RNA polymerase OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 1139
Score = 187 bits (475), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 203/775 (26%), Positives = 321/775 (41%), Gaps = 125/775 (16%)
Query: 14 VVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNLLSLSQD 73
V INPL CSPL DFDGDC+H Y PQS+AA+ E EL ++++QL N +G+ L L+ D
Sbjct: 441 TVKINPLICSPLAADFDGDCVHIYYPQSLAAKAEALELFSVEKQLTNSHNGKVNLQLAND 500
Query: 74 SLTAAYMLMEDGVLLNLYEIQQLQMLCDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPS 133
SL A M +L+ QL ML L P P+++K+ W+ Q+ LP+
Sbjct: 501 SLLALKH-MSSRTMLSKESANQLAMLLSLSL-PAPAVVKS----KPCWTITQIMQSALPA 554
Query: 134 NF---------------DYSFPPNGVSVSDGELTSSFESSGWLRDSECNIFQRLVERFQD 178
+ S EL SS L +
Sbjct: 555 ELTCEGDRFLVRDSTVIKLDLDKESIQASFSELVSSI----------------LAVKGPG 598
Query: 179 KTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGLQEAEQACDFNQ 238
L L Q L E+L + GF + L E Q C Q
Sbjct: 599 DALKFLNALQPFLMEFLLLDGFSVSLQDFS--------------VPKPLLEEAQECIKKQ 644
Query: 239 LLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHMFRNIQSLVDKY 298
LV L + ++ EV VD + ++++ + +
Sbjct: 645 SLV------------------------LEQSRCSNSQSVEVRVD---NNLKDVKQQIADF 677
Query: 299 ASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCAAWNSEKGLNSM 358
K + + S ++ K+VQ +G Q L R R L ++S +N
Sbjct: 678 VVKSSRLGLLIDPKSDPSVSKVVQQLAFVGPQ--LYREGKFYSRRLVDDCFSS--FVNRH 733
Query: 359 PMFSNTLKSIQCYIPHA--VVESSFLTGLNPLECFAHSVANRDSSFSDNADL--PGTLTR 414
P + ++ + P A +V+S++ GLNP E HS+ R++ + L PGTL +
Sbjct: 734 PPIEDGVQ----HPPEAYGLVQSAYFHGLNPYEELVHSICTRETIVRSSRGLTEPGTLFK 789
Query: 415 RLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTDKDSSCDSGFQEGTVGGEPVGALSACAI 474
LM +RD+ YDGTVRN+ N ++Q Y + D+ F GEPVG L+A AI
Sbjct: 790 SLMAILRDVVICYDGTVRNICSNSIMQLKYKEEDDTD----FPSAIAPGEPVGVLAATAI 845
Query: 475 SEAAYSALGQPISLLETSPLLNLKNVL--ECGSRKKSGDQTVSLFLSDKLGKQRYGFEYA 532
S AY A+ TS L +K +L + + + D+ V LFL+D +++ E A
Sbjct: 846 SNPAYKAVLDASQSNNTSWEL-MKEILKTKVSYKNDAKDRKVILFLNDCSCPKKFCKEKA 904
Query: 533 ALEVKNYLERVMFSDIVSTVMIMFTPQ---SSSLEIFNPWVCHFHLDKEIVARRKLTVHS 589
A+ V+ L+RV D + + I + Q +++ E +V H HL+K + K+ V S
Sbjct: 905 AIAVQGCLKRVTLEDCATDICIEYHKQVSLAATSEAIPAFVGHIHLEKAYL--EKINV-S 961
Query: 590 VIESLYRRYESLTKES-----------KVTFPNLKISSNRKCSKEGGYASLNKEKEDVDC 638
+ E L++ E K + K+TF S +K E ED+
Sbjct: 962 IDEILHKCQEVSGKHANKKGTLGHLFKKITFSTCDCSFTQKPGDEKVPCLQFSFSEDIPM 1021
Query: 639 ISVTIVESSRSSAKLEAVRDLMIPFLLGTVIKGFLEIKKVDILWSN---RSKVSNSYAGS 695
+S ++ ++ + + D + LL +IKG +++ I W S V ++ S
Sbjct: 1022 LSDSVEKA------VNVLADSLCSVLLEIIIKGDPRVQEAKITWVGSDATSWVKHTKKIS 1075
Query: 696 SGELYLRVTMSSDG--DSGRFWGVLINHCHRIMPMIDWTRSHPDNIHHFCSAYGI 748
GE + + + +G W + ++ C +M +ID RS P I GI
Sbjct: 1076 KGEPAVEIIVEKKEAMQNGDAWRIAMDACIPVMNLIDTQRSIPYGIQQVRELLGI 1130
>M0WRB8_HORVD (tr|M0WRB8) DNA-directed RNA polymerase OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 925
Score = 187 bits (475), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 203/774 (26%), Positives = 321/774 (41%), Gaps = 125/774 (16%)
Query: 15 VSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNLLSLSQDS 74
V INPL CSPL DFDGDC+H Y PQS+AA+ E EL ++++QL N +G+ L L+ DS
Sbjct: 228 VKINPLICSPLAADFDGDCVHIYYPQSLAAKAEALELFSVEKQLTNSHNGKVNLQLANDS 287
Query: 75 LTAAYMLMEDGVLLNLYEIQQLQMLCDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSN 134
L A M +L+ QL ML L P P+++K+ W+ Q+ LP+
Sbjct: 288 LLALKH-MSSRTMLSKESANQLAMLLSLSL-PAPAVVKS----KPCWTITQIMQSALPAE 341
Query: 135 F---------------DYSFPPNGVSVSDGELTSSFESSGWLRDSECNIFQRLVERFQDK 179
+ S EL SS L +
Sbjct: 342 LTCEGDRFLVRDSTVIKLDLDKESIQASFSELVSSI----------------LAVKGPGD 385
Query: 180 TLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGLQEAEQACDFNQL 239
L L Q L E+L + GF + L E Q C Q
Sbjct: 386 ALKFLNALQPFLMEFLLLDGFSVSLQDFS--------------VPKPLLEEAQECIKKQS 431
Query: 240 LVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHMFRNIQSLVDKYA 299
LV L + ++ EV VD + ++++ + +
Sbjct: 432 LV------------------------LEQSRCSNSQSVEVRVD---NNLKDVKQQIADFV 464
Query: 300 SKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCAAWNSEKGLNSMP 359
K + + S ++ K+VQ +G Q L R R L ++S +N P
Sbjct: 465 VKSSRLGLLIDPKSDPSVSKVVQQLAFVGPQ--LYREGKFYSRRLVDDCFSS--FVNRHP 520
Query: 360 MFSNTLKSIQCYIPHA--VVESSFLTGLNPLECFAHSVANRDSSFSDNADL--PGTLTRR 415
+ ++ + P A +V+S++ GLNP E HS+ R++ + L PGTL +
Sbjct: 521 PIEDGVQ----HPPEAYGLVQSAYFHGLNPYEELVHSICTRETIVRSSRGLTEPGTLFKS 576
Query: 416 LMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTDKDSSCDSGFQEGTVGGEPVGALSACAIS 475
LM +RD+ YDGTVRN+ N ++Q Y + D+ F GEPVG L+A AIS
Sbjct: 577 LMAILRDVVICYDGTVRNICSNSIMQLKYKEEDDTD----FPSAIAPGEPVGVLAATAIS 632
Query: 476 EAAYSALGQPISLLETSPLLNLKNVL--ECGSRKKSGDQTVSLFLSDKLGKQRYGFEYAA 533
AY A+ TS L +K +L + + + D+ V LFL+D +++ E AA
Sbjct: 633 NPAYKAVLDASQSNNTSWEL-MKEILKTKVSYKNDAKDRKVILFLNDCSCPKKFCKEKAA 691
Query: 534 LEVKNYLERVMFSDIVSTVMIMFTPQ---SSSLEIFNPWVCHFHLDKEIVARRKLTVHSV 590
+ V+ L+RV D + + I + Q +++ E +V H HL+K + K+ V S+
Sbjct: 692 IAVQGCLKRVTLEDCATDICIEYHKQVSLAATSEAIPAFVGHIHLEKAYL--EKINV-SI 748
Query: 591 IESLYRRYESLTKES-----------KVTFPNLKISSNRKCSKEGGYASLNKEKEDVDCI 639
E L++ E K + K+TF S +K E ED+ +
Sbjct: 749 DEILHKCQEVSGKHANKKGTLGHLFKKITFSTCDCSFTQKPGDEKVPCLQFSFSEDIPML 808
Query: 640 SVTIVESSRSSAKLEAVRDLMIPFLLGTVIKGFLEIKKVDILWSN---RSKVSNSYAGSS 696
S ++ ++ + + D + LL +IKG +++ I W S V ++ S
Sbjct: 809 SDSVEKA------VNVLADSLCSVLLEIIIKGDPRVQEAKITWVGSDATSWVKHTKKISK 862
Query: 697 GELYLRVTMSSDG--DSGRFWGVLINHCHRIMPMIDWTRSHPDNIHHFCSAYGI 748
GE + + + +G W + ++ C +M +ID RS P I GI
Sbjct: 863 GEPAVEIIVEKKEAMQNGDAWRIAMDACIPVMNLIDTQRSIPYGIQQVRELLGI 916
>Q1L5Y0_9EMBR (tr|Q1L5Y0) DNA-directed RNA polymerase (Fragment) OS=Anthoceros
sp. JL-2005 GN=RPD1 PE=2 SV=1
Length = 397
Score = 186 bits (472), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 131/414 (31%), Positives = 202/414 (48%), Gaps = 23/414 (5%)
Query: 24 PLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLME 83
P DFDGDC ++PQS+ + VE +EL+ +++QLIN Q G+ ++SL+QD+L A++L++
Sbjct: 1 PYNADFDGDCFSVFVPQSLPSIVECHELMTVEQQLINPQCGQPIVSLTQDTLLGAHLLVQ 60
Query: 84 DGVLLNLYEIQQLQMLCDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFDYSFPPNG 143
V L + L +L K+ P+I K+P W+GKQ+F M LP Y G
Sbjct: 61 GDVFLTRDYVGTLALLGSSKVA-IPAIYKSP--QGPRWTGKQVFGMTLPPTLKYQ--GGG 115
Query: 144 VSVSDGELTSSFESSGWLRDSECNIFQRL-VERFQDKTLNLLYDAQKVLCEWLSMTGFXX 202
V + DGE+ S + S WL S + + + E TL+ L Q + WLS GF
Sbjct: 116 VDIVDGEILDSDDGSKWLNSSVTGLVKAIYTEAGPAVTLSHLDAIQSMANWWLSQRGF-S 174
Query: 203 XXXXXXXXXXXCARENMMEEISYGLQEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASID 262
R+ M++EI L A QL+ D + +L NV S D
Sbjct: 175 VGLSDFMVAPDSTRKTMLKEIGDQLDMAITYASREQLISDPFIPRSKRNL----NVKSND 230
Query: 263 MDSLNYEKHISAALSEVSVDAFRHMF-RNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLV 321
AL + V F+ +F R I+ ++ ++ N+ L M +AGSKG++ KLV
Sbjct: 231 TTFTKRSAAKVKALQSLGVAKFQSLFSRRIEYVIMRHIRPDNSLLAMVRAGSKGSMGKLV 290
Query: 322 QHSMCLG--LQHSLVRLSYRMPRELSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVES 379
Q + CLG L L R+ R + + + + +P + ++
Sbjct: 291 QQAGCLGLHLHKGDEVLPCRLGRPFTTEGQSLKFSVQDLPGH---------WEATGLIRR 341
Query: 380 SFLTGLNPLECFAHSVANRDSSFSDNADLPGTLTRRLMFFMRDLYQAYDGTVRN 433
S + GL P E + ++ +R S+ S +LP + + LM FMRD+Y AYDGTVRN
Sbjct: 342 SLVDGLRPKEFYVQAMCSRSSTPSYGLELPNKIFKSLMLFMRDMYLAYDGTVRN 395
>K7M0Q7_SOYBN (tr|K7M0Q7) DNA-directed RNA polymerase OS=Glycine max PE=3 SV=1
Length = 2020
Score = 186 bits (472), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 153/528 (28%), Positives = 241/528 (45%), Gaps = 49/528 (9%)
Query: 374 HAVVESSFLTGLNPLECFAHSVANRDSSFSDNADL--PGTLTRRLMFFMRDLYQAYDGTV 431
+ +++ F GL+P E HS++ R+ + L PGTL + LM +RD+ YDGTV
Sbjct: 746 YGLLKGCFFNGLDPYEEMVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVICYDGTV 805
Query: 432 RNLYGNQLIQFSYDTDKDSSCDSGFQEGTVGGEPVGALSACAISEAAYSALGQPISLLET 491
RN+ N +IQF Y + F GEPVG L+A A+S AY A+ L+
Sbjct: 806 RNICSNSIIQFEYGIQAGDKTEHLFP----AGEPVGVLAATAMSNPAYKAV------LDA 855
Query: 492 SPLLN-----LKNVLEC--GSRKKSGDQTVSLFLSDKLGKQRYGFEYAALEVKNYLERVM 544
SP N +K +L C R + D+ V L+L+D E AA VKN L +V
Sbjct: 856 SPNSNSSWELMKEILLCKVNFRNEPVDRRVILYLNDCDCGGSCCRENAAYSVKNQLRKVS 915
Query: 545 FSDIVSTVMIMFTPQSS---SLEIFNPWVCHFHLDKEIVARRKLTVHSVIESLYRRYESL 601
+ +I + Q + + E V H +LD+ ++ K+++ +V E R +S
Sbjct: 916 LKNAAVEFIIEYQQQRTQKENSETDAGLVGHIYLDEMMLEELKISMANVFEKCLERLKSF 975
Query: 602 TKESKVT--FPNLKISSNRKCSKEGGYAS-----LNKEKEDVDCISVTIVESSRSSAKLE 654
+++ KV N+++S + CS A L D+D + E+
Sbjct: 976 SRKKKVNQYLKNIELSFSESCSSSHPAAPCLTFWLKNHDSDLDNAVKVLSEN-------- 1027
Query: 655 AVRDLMIPFLLGTVIKGFLEIKKVDILW---SNRSKVSNSYAGSSGELYLRVTMSSDG-- 709
+ P L T+IKG I I+W + V N Y S+GEL L + + +
Sbjct: 1028 -----ICPVLFETIIKGDPRISSASIIWVSPDTNTWVRNPYKSSNGELALDIVLEEEAVK 1082
Query: 710 DSGRFWGVLINHCHRIMPMIDWTRSHPDNIHHFCSAYGIDAGRQYFLHSLASATTETGKS 769
SG W ++++ C ++ +ID RS P I GI + +A++ K
Sbjct: 1083 QSGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQIQELLGISCTFDQAIQRVAASVKMVAKG 1142
Query: 770 ILPKHLHLVANSLSASGEFVGLNAKGIGRQRKHASVSSPFVQACFSNPGTSFIKAAKSGV 829
+L +HL L+A+S++ G VG N G + ++ PF A P F +AA+
Sbjct: 1143 VLREHLILLASSMTCGGNLVGFNTGGYKALSRQLNIQVPFTDATLFTPKKCFERAAEKCH 1202
Query: 830 LDDLQGCLDALAWGKCMSMGTSGQFDIM--HSEKVEEFPESADVYSLL 875
D L + + +WGK +++GT +FDI+ SE E DVYS L
Sbjct: 1203 TDSLSSIVASCSWGKHVAVGTGSKFDIVWDSSEIKSNEIEGMDVYSFL 1250
Score = 82.8 bits (203), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 66/123 (53%), Gaps = 3/123 (2%)
Query: 14 VVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNLLSLSQD 73
V INPL C PL DFDGDC+H + PQS+AA+ E+ EL A++ QL++ SG L LS D
Sbjct: 439 TVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFAVENQLLSSHSGNLNLQLSTD 498
Query: 74 SLTAAYMLMEDGVLLNLYEIQQLQMLCDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPS 133
SL A ML++ L QL M L + S +++ W+ Q+ LP
Sbjct: 499 SLLALKMLVKR-CFLGRAAANQLAMFLLLPLP--RPALLKASSDDACWTSIQILQGALPM 555
Query: 134 NFD 136
FD
Sbjct: 556 GFD 558
>K7MDF9_SOYBN (tr|K7MDF9) DNA-directed RNA polymerase OS=Glycine max PE=3 SV=1
Length = 2049
Score = 184 bits (468), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 150/525 (28%), Positives = 244/525 (46%), Gaps = 43/525 (8%)
Query: 374 HAVVESSFLTGLNPLECFAHSVANRDSSFSDNADL--PGTLTRRLMFFMRDLYQAYDGTV 431
+ +++ F GL+P E HS++ R+ + L PGTL + LM +RD+ YDGTV
Sbjct: 746 YGLLKGCFFNGLDPYEEMVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVICYDGTV 805
Query: 432 RNLYGNQLIQFSYDTDKDSSCDSGFQEGTVGGEPVGALSACAISEAAYSALGQPISLLET 491
RN+ N +IQF Y + F GEPVG L+A A+S AY A+ L+
Sbjct: 806 RNICSNSIIQFEYGIQAGDKSEHLFP----AGEPVGVLAATAMSNPAYKAV------LDA 855
Query: 492 SPLLN-----LKNVLEC--GSRKKSGDQTVSLFLSDKLGKQRYGFEYAALEVKNYLERVM 544
SP N +K +L C R + D+ V L+L+D Y E AA VK+ L +V
Sbjct: 856 SPSSNSSWELMKEILLCKVNFRNELVDRRVILYLNDCDCGGSYCRENAAYSVKDQLRKVS 915
Query: 545 FSDIVSTVMIMFTPQSSSLEIFNP---WVCHFHLDKEIVARRKLTVHSVIESLYRRYESL 601
D +I + Q + E V H +LD+ ++ K+++ V + + R +S
Sbjct: 916 LKDAAVEFIIEYQQQRTQKENSETDVGLVGHIYLDEMMLEELKISMAYVFDKCHERLKSF 975
Query: 602 TKESKV--TFPNLKISSNRKCSKEGGYASLNKEKEDVDCISVTIVE-SSRSSAKLEAVRD 658
+++ KV + N+++S + CS A C++ + S ++ + +
Sbjct: 976 SQKKKVNQSLKNIELSFSESCSSSHPAAP---------CLTFWLKNYDSDLDNAVKVLAE 1026
Query: 659 LMIPFLLGTVIKGFLEIKKVDILW---SNRSKVSNSYAGSSGELYLRVTMSSDG--DSGR 713
+ P L T+I+G I I+W + V N Y S+GEL L + + + SG
Sbjct: 1027 KICPVLFKTIIQGDPRISSASIIWVSPDTNTWVRNPYKSSNGELALDIILEKEAVKQSGD 1086
Query: 714 FWGVLINHCHRIMPMIDWTRSHPDNIHHFCSAYGIDAGRQYFLHSLASATTETGKSILPK 773
W V+++ C ++ +ID RS P I GI + +A++ K +L +
Sbjct: 1087 AWRVVLDACLPVLHLIDTRRSIPYAIKQIQELLGISCTFDQAIQRVAASVKMVAKGVLRE 1146
Query: 774 HLHLVANSLSASGEFVGLNAKGIGRQRKHASVSSPFVQACFSNPGTSFIKAAKSGVLDDL 833
HL L+A+S++ G VG N G + ++ PF A P F +AA+ D L
Sbjct: 1147 HLILLASSMTCGGNLVGFNIGGYKALSRQLNIQVPFTDATLFTPKKCFERAAEKCHTDSL 1206
Query: 834 QGCLDALAWGKCMSMGTSGQFDIMHSE---KVEEFPESADVYSLL 875
+ + +WGK +++GT +FD++ K E E DVYS L
Sbjct: 1207 SSIVASCSWGKHVAVGTGSKFDVVWDANEIKSNEI-EGMDVYSFL 1250
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 14 VVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNLLSLSQD 73
V INPL C PL DFDGDC+H + PQS+AA+ E+ EL +++ QL++ SG L LS D
Sbjct: 439 TVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVENQLLSSHSGNLNLQLSTD 498
Query: 74 SLTAAYMLMEDGVLLNLYEIQQLQMLCDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPS 133
SL + ML++ + QL M L + S ++ W+ Q+ LP
Sbjct: 499 SLLSLKMLVKR-CFFDRAAANQLAMFILLPLP--RPALLKASSGDACWTSIQILQCALPL 555
Query: 134 NFD 136
FD
Sbjct: 556 GFD 558
>K7MDF5_SOYBN (tr|K7MDF5) DNA-directed RNA polymerase OS=Glycine max PE=3 SV=1
Length = 2082
Score = 184 bits (467), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 150/525 (28%), Positives = 244/525 (46%), Gaps = 43/525 (8%)
Query: 374 HAVVESSFLTGLNPLECFAHSVANRDSSFSDNADL--PGTLTRRLMFFMRDLYQAYDGTV 431
+ +++ F GL+P E HS++ R+ + L PGTL + LM +RD+ YDGTV
Sbjct: 746 YGLLKGCFFNGLDPYEEMVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVICYDGTV 805
Query: 432 RNLYGNQLIQFSYDTDKDSSCDSGFQEGTVGGEPVGALSACAISEAAYSALGQPISLLET 491
RN+ N +IQF Y + F GEPVG L+A A+S AY A+ L+
Sbjct: 806 RNICSNSIIQFEYGIQAGDKSEHLFP----AGEPVGVLAATAMSNPAYKAV------LDA 855
Query: 492 SPLLN-----LKNVLEC--GSRKKSGDQTVSLFLSDKLGKQRYGFEYAALEVKNYLERVM 544
SP N +K +L C R + D+ V L+L+D Y E AA VK+ L +V
Sbjct: 856 SPSSNSSWELMKEILLCKVNFRNELVDRRVILYLNDCDCGGSYCRENAAYSVKDQLRKVS 915
Query: 545 FSDIVSTVMIMFTPQSSSLEIFNP---WVCHFHLDKEIVARRKLTVHSVIESLYRRYESL 601
D +I + Q + E V H +LD+ ++ K+++ V + + R +S
Sbjct: 916 LKDAAVEFIIEYQQQRTQKENSETDVGLVGHIYLDEMMLEELKISMAYVFDKCHERLKSF 975
Query: 602 TKESKV--TFPNLKISSNRKCSKEGGYASLNKEKEDVDCISVTIVE-SSRSSAKLEAVRD 658
+++ KV + N+++S + CS A C++ + S ++ + +
Sbjct: 976 SQKKKVNQSLKNIELSFSESCSSSHPAAP---------CLTFWLKNYDSDLDNAVKVLAE 1026
Query: 659 LMIPFLLGTVIKGFLEIKKVDILW---SNRSKVSNSYAGSSGELYLRVTMSSDG--DSGR 713
+ P L T+I+G I I+W + V N Y S+GEL L + + + SG
Sbjct: 1027 KICPVLFKTIIQGDPRISSASIIWVSPDTNTWVRNPYKSSNGELALDIILEKEAVKQSGD 1086
Query: 714 FWGVLINHCHRIMPMIDWTRSHPDNIHHFCSAYGIDAGRQYFLHSLASATTETGKSILPK 773
W V+++ C ++ +ID RS P I GI + +A++ K +L +
Sbjct: 1087 AWRVVLDACLPVLHLIDTRRSIPYAIKQIQELLGISCTFDQAIQRVAASVKMVAKGVLRE 1146
Query: 774 HLHLVANSLSASGEFVGLNAKGIGRQRKHASVSSPFVQACFSNPGTSFIKAAKSGVLDDL 833
HL L+A+S++ G VG N G + ++ PF A P F +AA+ D L
Sbjct: 1147 HLILLASSMTCGGNLVGFNIGGYKALSRQLNIQVPFTDATLFTPKKCFERAAEKCHTDSL 1206
Query: 834 QGCLDALAWGKCMSMGTSGQFDIMHSE---KVEEFPESADVYSLL 875
+ + +WGK +++GT +FD++ K E E DVYS L
Sbjct: 1207 SSIVASCSWGKHVAVGTGSKFDVVWDANEIKSNEI-EGMDVYSFL 1250
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 14 VVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNLLSLSQD 73
V INPL C PL DFDGDC+H + PQS+AA+ E+ EL +++ QL++ SG L LS D
Sbjct: 439 TVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVENQLLSSHSGNLNLQLSTD 498
Query: 74 SLTAAYMLMEDGVLLNLYEIQQLQMLCDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPS 133
SL + ML++ + QL M L + S ++ W+ Q+ LP
Sbjct: 499 SLLSLKMLVKR-CFFDRAAANQLAMFILLPLP--RPALLKASSGDACWTSIQILQCALPL 555
Query: 134 NFD 136
FD
Sbjct: 556 GFD 558
>I1IV91_BRADI (tr|I1IV91) DNA-directed RNA polymerase OS=Brachypodium distachyon
GN=BRADI4G45065 PE=3 SV=1
Length = 1954
Score = 183 bits (465), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 143/511 (27%), Positives = 230/511 (45%), Gaps = 36/511 (7%)
Query: 374 HAVVESSFLTGLNPLECFAHSVANRDSSFSDNADL--PGTLTRRLMFFMRDLYQAYDGTV 431
+ +V++S+ GLNP E HS++ R++ + L PGTL + LM +RD+ YDGTV
Sbjct: 745 YGLVQNSYFHGLNPYEELVHSISTREAIVRSSRGLTEPGTLFKNLMAILRDVVICYDGTV 804
Query: 432 RNLYGNQLIQFSYDTDKDSSCDSGFQEGTVGGEPVGALSACAISEAAYSALGQPISLLET 491
RN+ N ++Q Y+ D + S GEPVG L+A AIS AY A+ T
Sbjct: 805 RNICSNSIMQLKYNEDDATDIPSAL----TPGEPVGVLAATAISNPAYKAVLDASQSNNT 860
Query: 492 SPLLNLKNVLEC--GSRKKSGDQTVSLFLSDKLGKQRYGFEYAALEVKNYLERVMFSDIV 549
S ++K +L+ + + D+ V LFL+D +++ E AA+ V+N L+RV D
Sbjct: 861 S-WASMKEILQTKVSYKNDTNDRKVILFLNDCSCPKKFCKEKAAIAVQNRLKRVTLEDCA 919
Query: 550 STVMIMFTPQ--SSSLEIFNPWVCHFHLDKEIVARRKLTVHSVIESLYRRYESLTKES-- 605
+ + I + Q S E V H HL+K + ++ +++ K+
Sbjct: 920 TDICIEYHKQILDGSSEATPALVGHIHLEKARLDMINVSTEDILQKCQEVSLKHGKKKGH 979
Query: 606 ------KVTFPNLKISSNRKCSKEGGYASLNKEKEDVDCISVTIVE-----SSRSSAKLE 654
K+TF S +K +G V C+ + E S +
Sbjct: 980 LGHLFKKITFSTCDCSFTQKPMIDGKLPK-------VPCLQFSFSEDIPMLSESVERAVS 1032
Query: 655 AVRDLMIPFLLGTVIKGFLEIKKVDILW---SNRSKVSNSYAGSSGELYLRVTMSSDGDS 711
+ + + LL T+IKG I++ I+W +S V N+ S GE + + + + S
Sbjct: 1033 VLANSLCDVLLDTIIKGDPRIQEAKIMWVGSDAQSWVKNTRKVSKGEPTVEIVVEKNEAS 1092
Query: 712 --GRFWGVLINHCHRIMPMIDWTRSHPDNIHHFCSAYGIDAGRQYFLHSLASATTETGKS 769
G W + ++ C ++ +ID RS P I GI + L++ K
Sbjct: 1093 KQGDAWRIAMDACIPVIDLIDTRRSIPYGIQQVRELLGISCSFDQIVQRLSTTMKTVAKG 1152
Query: 770 ILPKHLHLVANSLSASGEFVGLNAKGIGRQRKHASVSSPFVQACFSNPGTSFIKAAKSGV 829
IL HL LVANS++ +G G N G + V PF ++ P F KAA+
Sbjct: 1153 ILKDHLILVANSMTCTGNLYGFNTGGYRATFRALKVQVPFTESTLFTPMKCFEKAAEKCH 1212
Query: 830 LDDLQGCLDALAWGKCMSMGTSGQFDIMHSE 860
D L + + +WGK ++GT F I+ +E
Sbjct: 1213 SDALGCVVSSCSWGKHAALGTGSSFQILWNE 1243
Score = 86.3 bits (212), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 67/120 (55%), Gaps = 6/120 (5%)
Query: 14 VVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNLLSLSQD 73
V INPL CSPL DFDGDC+H Y PQS+AA+ E EL ++++QL N +G+ L LS D
Sbjct: 440 TVKINPLICSPLAADFDGDCVHIYYPQSLAAKAEALELFSVEKQLTNSHNGKVNLQLSND 499
Query: 74 SLTAAYMLMEDGVLLNLYEIQQLQMLCDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPS 133
SL A M +L+ QL ML L P P+++K W+ Q+ LP+
Sbjct: 500 SLL-ALKHMSSRTVLSKESANQLAMLLSFSL-PDPAVVKL----KPCWTITQIIQGALPA 553
>C5XJ93_SORBI (tr|C5XJ93) DNA-directed RNA polymerase (Fragment) OS=Sorghum bicolor
GN=Sb03g046922 PE=3 SV=1
Length = 1571
Score = 182 bits (461), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 159/565 (28%), Positives = 258/565 (45%), Gaps = 57/565 (10%)
Query: 367 SIQCYIP---HAVVESSFLTGLNPLECFAHSVANRDS---SFSDNADLPGTLTRRLMFFM 420
S +CY P H V SSF GLNP E HS++ R+ S S G L + +M +
Sbjct: 698 STKCYDPPKGHDFVTSSFYNGLNPYEELLHSISVREKIERSSSKGLAEAGNLFKNMMAML 757
Query: 421 RDLYQAYDGTVRNLYGNQLIQFSYDTDKDSSCDSGFQEGTVGGEPVGALSACAISEAAYS 480
RD+ YDGT+R Y N ++QF D+ SS G+ +G L+A + AAY
Sbjct: 758 RDVTVCYDGTMRTSYNNSIVQF--DSTNVSS-------SLTPGDSIGILAATVFANAAYK 808
Query: 481 ALGQPISLLETSPLLNLKNVLECGSRKKSG--DQTVSLFLSDKLGKQRYGFEYAALEVKN 538
A+ P TS ++K VL + K+G DQ L+L+ ++ E AA V++
Sbjct: 809 AVLVPNQKNMTS-WDSMKEVLLTNACSKTGTIDQKAILYLNKCFCGLKFCSELAAHRVQS 867
Query: 539 YLERVMFSDIVSTVMIMFTPQSSSLEIFNPWVCHFHLDKEIVARRKLTVHSVIESLYRRY 598
L+R+ V I + Q + + V H HLDKE + ++T+ +++++ +
Sbjct: 868 CLKRIKLEYCAIEVSIKY--QQEATQAAQCLVGHIHLDKEQLNWMEITMGNILQTCQKNV 925
Query: 599 ESLTKESKVTFPNLK----ISSNR-KCSKEGGYASLNKEKEDVDCISVTIVESSRS---- 649
+++ LK ISS C ++ G ++ V C+ I S+ +
Sbjct: 926 NKHVMKNRQLMQILKTTEIISSEYCLCGQDIG----DERALQVSCLQCFIHASTTTVQPE 981
Query: 650 SAKLEAVRDLMIPFLLGTVIKGFLEIKKVDILWSN---RSKVSNSYAGSSGELYLRVTMS 706
S ++ + + + P LL TVIKG ++++ ++W V NS A GEL + +T+
Sbjct: 982 SNVIQMMTNTIFPILLDTVIKGDPQVQEAKLIWVEPKLTRWVKNSSAEQKGELAVEITVE 1041
Query: 707 --SDGDSGRFWGVLINHCHRIMPMIDWTRSHPDNIHHFCSAYGI----DAGRQY------ 754
+ ++G WGV+++ C +M +ID TRS P NI +GI D Q+
Sbjct: 1042 KIAAAENGGTWGVVMDACVPVMDLIDTTRSAPCNIQEVQKVFGISSVFDRVVQFLMFCPP 1101
Query: 755 ---FLHSLASATTETGKSILPKHLHLVANSLSASGEFVGLNAKGIGRQRKHASVSSPFVQ 811
F L+ A KS+L +HL VA+S++ +G G N G + V +PF +
Sbjct: 1102 LGSFFQHLSKAVGMVTKSVLMEHLITVASSMTCTGSLHGFNRSGSKATFQSLKVQAPFTE 1161
Query: 812 ACFSNPGTSFIKAAKSGVLDDLQGCLDALAWGKCMSMGTSGQFDIMHSEKVE----EFPE 867
A S P F K+A+ D L + +WG ++GT F I +++ + E
Sbjct: 1162 ATLSRPMQCFRKSAEKVDSDQLDSVVSTCSWGNHAAIGTGSAFKIHWNDENQSASNEILR 1221
Query: 868 SADVYSLL--IANFDQLNDKVDIPH 890
++Y L + K D PH
Sbjct: 1222 EYNLYDFLEAVGRIGATEQKTDAPH 1246
Score = 69.7 bits (169), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 43/68 (63%)
Query: 14 VVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNLLSLSQD 73
+ INPL C PL DFDGDC+H + P+SV ARVE EL A+++QL+N + + + D
Sbjct: 444 TIKINPLICGPLEADFDGDCVHIFFPRSVLARVEAAELFAVEKQLLNSHNAKLNFQIKND 503
Query: 74 SLTAAYML 81
L A ++
Sbjct: 504 YLLALRIM 511
>I1QR54_ORYGL (tr|I1QR54) Uncharacterized protein OS=Oryza glaberrima PE=4 SV=1
Length = 577
Score = 181 bits (459), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 104/271 (38%), Positives = 161/271 (59%), Gaps = 10/271 (3%)
Query: 758 SLASATTETGKSILPKHLHLVANSLSASGEFVGLNAKGIGRQRKHASVSSPFVQACFSNP 817
SL S T G++I +HL +VA+ LS SG+F GL+++G+ +QR S+SSPF +ACFS P
Sbjct: 290 SLRSTTDAIGRNIHRQHLLVVADCLSISGQFHGLSSQGLKQQRAWLSISSPFSEACFSRP 349
Query: 818 GTSFIKAAKSGVLDDLQGCLDALAWGKCMSMGTSGQFDIMHSEKVEEFPESADVYSLLIA 877
SFI AAK +D+L G LDA+AWGK GTSG F +++S K ++ ++ ++Y L
Sbjct: 350 AYSFINAAKRDSVDNLSGALDAIAWGKEPCAGTSGPFKVLYSGKSQKTKQNKNIYDFLHN 409
Query: 878 NFDQLNDKVDIPHYHNRSS--NKCDSEFSRK-----NGGYALKEYKQSKSFIRNFVTVND 930
Q +K + Y R+ +K S FS K NGG K S + + + D
Sbjct: 410 PEVQALEKNFMDTYKQRTEKPSKQRSAFSSKGNATINGGTISVNQKFLDSKVGIWENIID 469
Query: 931 IQKLAFESRSILSRYSIDQVISDHDKITMLRVLHFHPRKNEKLGCGPADIKVGWHPVHKD 990
++ +++L Y++++V+++ DK ++ L FHPR +K+G G +IK+G +P H +
Sbjct: 470 MRTCL---QNMLREYTLNEVVTEQDKSCLIEALKFHPRGYDKIGVGIREIKIGVNPGHPN 526
Query: 991 SRCFHIIRSDESVEDFSYRKCILRALEIVDP 1021
SRCF + RSD++ DFSY KC+L A + P
Sbjct: 527 SRCFIVQRSDDTSADFSYNKCVLGAANSISP 557
Score = 169 bits (429), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 92/218 (42%), Positives = 138/218 (63%), Gaps = 6/218 (2%)
Query: 463 GEPVGALSACAISEAAYSALGQPISLLETSPLLNLKNVLECGSRKKSGDQTVSLFLSDKL 522
G PVG+ +AC+ISEAAY AL P++ LE SPL++L+ VL+C KS T LFLS L
Sbjct: 12 GAPVGSWAACSISEAAYGALDHPVNALEDSPLMDLQEVLKCHKGTKSAVHTGLLFLSKYL 71
Query: 523 GKQRYGFEYAALEVKNYLERVMFSDIVSTVMIMFTPQSSSLEIFNPWVCHFHLDKEIVAR 582
K RYGFEYA+LEVK++LERV FSD+V TVMI++ NPW+ HFHL +E +
Sbjct: 72 KKYRYGFEYASLEVKDHLERVDFSDLVDTVMILYGSSDMQRTQGNPWITHFHLSEETMKI 131
Query: 583 RKLTVHSVIESLYRRYESLTKESKVTFPNLKISSNRKCSKEGGYASLNKEKEDVDCISVT 642
++L + ++ L +Y +L K+ T P++ IS + KCS G N+ C+++
Sbjct: 132 KRLRLGFIVRELIDQYNALRKKLNNTIPSVCISYS-KCSV-GNECVKNRSC----CVTMV 185
Query: 643 IVESSRSSAKLEAVRDLMIPFLLGTVIKGFLEIKKVDI 680
S S+++L+ +++ +IP +L T++KGFLE + V +
Sbjct: 186 AQVESNSTSQLDIIKERVIPSILATLLKGFLEFENVKV 223
>K7MDF7_SOYBN (tr|K7MDF7) DNA-directed RNA polymerase OS=Glycine max PE=3 SV=1
Length = 2065
Score = 180 bits (457), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 149/534 (27%), Positives = 245/534 (45%), Gaps = 45/534 (8%)
Query: 374 HAVVESSFLTGLNPLECFAHSVANRDSSFSDNADL--PGTLTRRLMFFMRDLYQAYDGTV 431
+ +++ F GL+P E HS++ R+ + L PGTL + LM +RD+ YDGTV
Sbjct: 746 YGLLKGCFFNGLDPYEEMVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVICYDGTV 805
Query: 432 RNLYGNQLIQFSYDTDKDSSCDSGFQEGTVGGEPVGALSACAISEAAYSALGQPISLLET 491
RN+ N +IQF Y + F GEPVG L+A A+S AY A+ L+
Sbjct: 806 RNICSNSIIQFEYGIQAGDKSEHLFP----AGEPVGVLAATAMSNPAYKAV------LDA 855
Query: 492 SPLLN-----LKNVLEC--GSRKKSGDQTVSLFLSDKLGKQRYGFEYAALEVKNYLERVM 544
SP N +K +L C R + D+ V L+L+D Y E AA VK+ L +V
Sbjct: 856 SPSSNSSWELMKEILLCKVNFRNELVDRRVILYLNDCDCGGSYCRENAAYSVKDQLRKVS 915
Query: 545 FSDIVSTVMIMFTPQSSSLEIFNP---WVCHFHLDKEIVARRKLTVHSVIESLYRRYESL 601
D +I + Q + E V H +LD+ ++ K+++ V + + R +S
Sbjct: 916 LKDAAVEFIIEYQQQRTQKENSETDVGLVGHIYLDEMMLEELKISMAYVFDKCHERLKSF 975
Query: 602 TKESKV--TFPNLKISSNRKCSKEGGYASL----------NKEKEDVDCISVTIVE-SSR 648
+++ KV + N+++S + G Y L + C++ + S
Sbjct: 976 SQKKKVNQSLKNIELSFSLFV---GLYHFLIMFHLSSESCSSSHPAAPCLTFWLKNYDSD 1032
Query: 649 SSAKLEAVRDLMIPFLLGTVIKGFLEIKKVDILW---SNRSKVSNSYAGSSGELYLRVTM 705
++ + + + P L T+I+G I I+W + V N Y S+GEL L + +
Sbjct: 1033 LDNAVKVLAEKICPVLFKTIIQGDPRISSASIIWVSPDTNTWVRNPYKSSNGELALDIIL 1092
Query: 706 SSDG--DSGRFWGVLINHCHRIMPMIDWTRSHPDNIHHFCSAYGIDAGRQYFLHSLASAT 763
+ SG W V+++ C ++ +ID RS P I GI + +A++
Sbjct: 1093 EKEAVKQSGDAWRVVLDACLPVLHLIDTRRSIPYAIKQIQELLGISCTFDQAIQRVAASV 1152
Query: 764 TETGKSILPKHLHLVANSLSASGEFVGLNAKGIGRQRKHASVSSPFVQACFSNPGTSFIK 823
K +L +HL L+A+S++ G VG N G + ++ PF A P F +
Sbjct: 1153 KMVAKGVLREHLILLASSMTCGGNLVGFNIGGYKALSRQLNIQVPFTDATLFTPKKCFER 1212
Query: 824 AAKSGVLDDLQGCLDALAWGKCMSMGTSGQFDIM--HSEKVEEFPESADVYSLL 875
AA+ D L + + +WGK +++GT +FD++ +E E DVYS L
Sbjct: 1213 AAEKCHTDSLSSIVASCSWGKHVAVGTGSKFDVVWDANEIKSNEIEGMDVYSFL 1266
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 14 VVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNLLSLSQD 73
V INPL C PL DFDGDC+H + PQS+AA+ E+ EL +++ QL++ SG L LS D
Sbjct: 439 TVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVENQLLSSHSGNLNLQLSTD 498
Query: 74 SLTAAYMLMEDGVLLNLYEIQQLQMLCDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPS 133
SL + ML++ + QL M L + S ++ W+ Q+ LP
Sbjct: 499 SLLSLKMLVKR-CFFDRAAANQLAMFILLPLP--RPALLKASSGDACWTSIQILQCALPL 555
Query: 134 NFD 136
FD
Sbjct: 556 GFD 558
>I1MIR6_SOYBN (tr|I1MIR6) DNA-directed RNA polymerase OS=Glycine max PE=3 SV=2
Length = 2098
Score = 179 bits (455), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 149/534 (27%), Positives = 245/534 (45%), Gaps = 45/534 (8%)
Query: 374 HAVVESSFLTGLNPLECFAHSVANRDSSFSDNADL--PGTLTRRLMFFMRDLYQAYDGTV 431
+ +++ F GL+P E HS++ R+ + L PGTL + LM +RD+ YDGTV
Sbjct: 746 YGLLKGCFFNGLDPYEEMVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVICYDGTV 805
Query: 432 RNLYGNQLIQFSYDTDKDSSCDSGFQEGTVGGEPVGALSACAISEAAYSALGQPISLLET 491
RN+ N +IQF Y + F GEPVG L+A A+S AY A+ L+
Sbjct: 806 RNICSNSIIQFEYGIQAGDKSEHLFP----AGEPVGVLAATAMSNPAYKAV------LDA 855
Query: 492 SPLLN-----LKNVLEC--GSRKKSGDQTVSLFLSDKLGKQRYGFEYAALEVKNYLERVM 544
SP N +K +L C R + D+ V L+L+D Y E AA VK+ L +V
Sbjct: 856 SPSSNSSWELMKEILLCKVNFRNELVDRRVILYLNDCDCGGSYCRENAAYSVKDQLRKVS 915
Query: 545 FSDIVSTVMIMFTPQSSSLEIFNP---WVCHFHLDKEIVARRKLTVHSVIESLYRRYESL 601
D +I + Q + E V H +LD+ ++ K+++ V + + R +S
Sbjct: 916 LKDAAVEFIIEYQQQRTQKENSETDVGLVGHIYLDEMMLEELKISMAYVFDKCHERLKSF 975
Query: 602 TKESKV--TFPNLKISSNRKCSKEGGYASL----------NKEKEDVDCISVTIVE-SSR 648
+++ KV + N+++S + G Y L + C++ + S
Sbjct: 976 SQKKKVNQSLKNIELSFSLFV---GLYHFLIMFHLSSESCSSSHPAAPCLTFWLKNYDSD 1032
Query: 649 SSAKLEAVRDLMIPFLLGTVIKGFLEIKKVDILW---SNRSKVSNSYAGSSGELYLRVTM 705
++ + + + P L T+I+G I I+W + V N Y S+GEL L + +
Sbjct: 1033 LDNAVKVLAEKICPVLFKTIIQGDPRISSASIIWVSPDTNTWVRNPYKSSNGELALDIIL 1092
Query: 706 SSDG--DSGRFWGVLINHCHRIMPMIDWTRSHPDNIHHFCSAYGIDAGRQYFLHSLASAT 763
+ SG W V+++ C ++ +ID RS P I GI + +A++
Sbjct: 1093 EKEAVKQSGDAWRVVLDACLPVLHLIDTRRSIPYAIKQIQELLGISCTFDQAIQRVAASV 1152
Query: 764 TETGKSILPKHLHLVANSLSASGEFVGLNAKGIGRQRKHASVSSPFVQACFSNPGTSFIK 823
K +L +HL L+A+S++ G VG N G + ++ PF A P F +
Sbjct: 1153 KMVAKGVLREHLILLASSMTCGGNLVGFNIGGYKALSRQLNIQVPFTDATLFTPKKCFER 1212
Query: 824 AAKSGVLDDLQGCLDALAWGKCMSMGTSGQFDIM--HSEKVEEFPESADVYSLL 875
AA+ D L + + +WGK +++GT +FD++ +E E DVYS L
Sbjct: 1213 AAEKCHTDSLSSIVASCSWGKHVAVGTGSKFDVVWDANEIKSNEIEGMDVYSFL 1266
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 14 VVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNLLSLSQD 73
V INPL C PL DFDGDC+H + PQS+AA+ E+ EL +++ QL++ SG L LS D
Sbjct: 439 TVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVENQLLSSHSGNLNLQLSTD 498
Query: 74 SLTAAYMLMEDGVLLNLYEIQQLQMLCDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPS 133
SL + ML++ + QL M L + S ++ W+ Q+ LP
Sbjct: 499 SLLSLKMLVKR-CFFDRAAANQLAMFILLPLP--RPALLKASSGDACWTSIQILQCALPL 555
Query: 134 NFD 136
FD
Sbjct: 556 GFD 558
>D8RCH5_SELML (tr|D8RCH5) DNA-directed RNA polymerase (Fragment) OS=Selaginella
moellendorffii GN=SELMODRAFT_90820 PE=3 SV=1
Length = 510
Score = 177 bits (448), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 148/481 (30%), Positives = 208/481 (43%), Gaps = 107/481 (22%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
+I+L R+ P S INPL CSPL+GDFDGD LH Y PQ+ ARVE EL+ L +Q
Sbjct: 126 VIALIARIHPGKSF-RINPLVCSPLKGDFDGDRLHVYFPQAEDARVETKELMGLKQQFQA 184
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCDKKLTPPPSIIKAPSRNNSL 120
SG ++SL+QD L AAY+L+ + ++QQL + D+ P P+I+K +L
Sbjct: 185 LSSGNPVISLTQDMLVAAYILVSRHIFFTAPQMQQLALHADRWSLPDPAIVKPL----AL 240
Query: 121 WSGKQLFSMLLPSNFDYSFPPNGVSVSDGELTSSFESSGWLRDSECNIFQRLVERFQ-DK 179
W+G Q F +LLPS +S GV +SDGEL ++ + WL ++ + + E+F +
Sbjct: 241 WTGFQAFGLLLPSELAFS-TRTGVLISDGELVTAGDDGSWLGGGTDSLLRAIHEKFGVAE 299
Query: 180 TLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGLQEAEQACDFNQL 239
+ L +L E+L + GF S GL DFN
Sbjct: 300 AIGYLDSCCSMLKEFLHIEGF-----------------------SIGLG------DFNV- 329
Query: 240 LVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHMFRNIQSLVDKYA 299
SD + L Y K + V FR + R ++ +
Sbjct: 330 ---------------SDRQREAISELLAYAKE-----NYVEEQDFRDVERCLEVKIKNQT 369
Query: 300 SKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCAAWNSEKGLNSMP 359
+GN M KAGSKG+ H CLG+Q R +
Sbjct: 370 RRGNRLHMMMKAGSKGSASSARIHVACLGVQVVHGRSEF--------------------- 408
Query: 360 MFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSF-SDNADLPGTLTRRLMF 418
++ SF +GL+P E + HSV R + S GTL LM
Sbjct: 409 -----------------IDKSFWSGLDPSEFWQHSVCTRATLLKSLTMHDAGTLASTLMN 451
Query: 419 FMRDLYQAYDGTVRNLYGNQLIQFSYDTDKDSSCDSGFQEGTVGGEPVGALSACAISEAA 478
+ D+Y AYDGTVR+ Q++Q Y E GE VGAL+A I+E A
Sbjct: 452 HLEDVYLAYDGTVRHRQSEQVVQLVYGN-----------ESAQPGEAVGALAASFITEQA 500
Query: 479 Y 479
Y
Sbjct: 501 Y 501
>M1C2W7_SOLTU (tr|M1C2W7) Uncharacterized protein OS=Solanum tuberosum
GN=PGSC0003DMG400022753 PE=4 SV=1
Length = 226
Score = 173 bits (439), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 94/227 (41%), Positives = 140/227 (61%), Gaps = 10/227 (4%)
Query: 814 FSNPGTSFIKAAKSGVLDDLQGCLDALAWGKCMSMGTSGQFDIMHSEKVEEFPESADVYS 873
NPG SF++AAK G+ D+LQG L++LAWGK S+GT FDI++S K E E DVY+
Sbjct: 1 MQNPGDSFVRAAKMGLSDNLQGSLESLAWGKTPSIGTGSSFDIIYSGKGYEPAEPIDVYT 60
Query: 874 LLIANFDQLNDKVDIP-----HYHNRSSNKCDSEFSRKNGGYALKEYKQSKSFIRNFVTV 928
LL + KV + +S + N E+ +K +R+F++
Sbjct: 61 LLQNHVTSGTPKVKVTLDEDGGMDGKSLARRLDRLDDLNKKSCKSEWSITK--LRSFISF 118
Query: 929 NDIQKLAFESRSILSRYSIDQVISDHDKITMLRVLHFHPRKNEKLGCG-PADIKVGWHPV 987
NDI+KL+ + +LS+Y+ID+ +++ DK + L FHPR+NEK+G G P +IK+G+H
Sbjct: 119 NDIKKLSQSLKQMLSKYAIDRELNEADKCIAMMALQFHPRRNEKIGKGAPQEIKIGYHKE 178
Query: 988 HKDSRCFHIIRSDESVEDFSYRKCILRALEIVDPGKFRIQKKKWLGQ 1034
++DSRCF ++RSD SVEDFSYRKC+ ALE++ P K + +WL +
Sbjct: 179 YEDSRCFMLVRSDGSVEDFSYRKCMQHALELIAPQKAKTS--RWLNR 223
>G7LG09_MEDTR (tr|G7LG09) DNA-directed RNA polymerase OS=Medicago truncatula
GN=MTR_8g038990 PE=3 SV=1
Length = 2032
Score = 172 bits (436), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 141/531 (26%), Positives = 228/531 (42%), Gaps = 68/531 (12%)
Query: 375 AVVESSFLTGLNPLECFAHSVANRD--SSFSDNADLPGTLTRRLMFFMRDLYQAYDGTVR 432
+++ F GL+P E HS+A R+ S PGTL + LM +RD+ YDGTVR
Sbjct: 829 GLLKGCFFHGLDPYEELVHSIATREIIDRSSRGLSEPGTLFKNLMAILRDVVICYDGTVR 888
Query: 433 NLYGNQLIQFSYDTDKDSSCDSGFQEGTVGGEPVGALSACAISEAAYSALGQPISLLETS 492
N+ N +IQF Y + F GEPVG L+A ++S AY A+ L+ S
Sbjct: 889 NVCSNSIIQFEYGIQSGDAAQHLFP----AGEPVGVLAATSMSNPAYKAV------LDAS 938
Query: 493 PLLN-----LKNVLEC--GSRKKSGDQTVSLFLSDKLGKQRYGFEYAALEVKNYLERVMF 545
P N +K +L C R + D+ V L+L+D + Y E AA V+N L +V
Sbjct: 939 PSSNSSWGFMKEILLCKVNFRNEPNDRRVILYLNDCDCGRNYCRENAAYLVQNQLRKVSL 998
Query: 546 SDIVSTVMIMFTPQSSSLEIFNP--WVCHFHLDKEIVARRKLTVHSVIESLYRRYESLTK 603
D ++ + Q + VCH L + + K+ + V + + S ++
Sbjct: 999 KDAALDFIVEYQQQRRRRDGTEDAGLVCHIRLKEVKLEELKINMTEVYQKCQEKLNSFSR 1058
Query: 604 ESKVT--FPNLKISSNRKCSKEGGYASLNKEKEDVDCISVTIVESSRSSAKLEAVRDLMI 661
+ K++ F ++ + CS C++ + + + D++
Sbjct: 1059 KKKLSPFFKRTELIFSEFCS--------------APCVTFLWPDGVDLDQTTKVLADMIC 1104
Query: 662 PFLLGTVIKGFLEIKKVDILWSN---RSKVSNSYAGSSGELYLRVTMSSDG--DSGRFWG 716
P LL T+I+G I I+W N + V N S+GEL L V + + SG W
Sbjct: 1105 PVLLETIIQGDPRISSASIIWVNPGTNTWVRNPSKSSNGELALDVILEKEAVKQSGDAWR 1164
Query: 717 VLINHCHRIMPMIDWTRSHPDNIHHFCSAYGIDAGRQYFLHSLASATTETGKSILPKHLH 776
++++ C ++ +ID RS P I GI + LA++ K +L +HL
Sbjct: 1165 IVLDSCLPVLHLIDTRRSIPYAIKQIQELLGIACTFDQAIQRLAASVRMVAKGVLREHLI 1224
Query: 777 LVANSLSASGEFVGLNAKGIGRQRKHASVSSPFVQA----------------CF------ 814
L+A+S++ G VG N G + + PF A C+
Sbjct: 1225 LLASSMTCGGNLVGFNTGGYKTLARQLDIQVPFTDATLFVSALVISKLQDVFCYYFSYFV 1284
Query: 815 ----SNPGTSFIKAAKSGVLDDLQGCLDALAWGKCMSMGTSGQFDIMHSEK 861
P F +AA+ D L + + +WGK +++GT +FDI+ K
Sbjct: 1285 NVIMQTPRKCFERAAEKHHSDSLSSIVASCSWGKHVAVGTGSKFDIVWDPK 1335
Score = 80.5 bits (197), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 68/123 (55%), Gaps = 3/123 (2%)
Query: 14 VVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNLLSLSQD 73
V INPL C PL DFDGDC+H + PQS+AA+ E+ EL ++++QL++ SG L LS D
Sbjct: 521 TVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVLELFSVEKQLLSSHSGNLNLQLSAD 580
Query: 74 SLTAAYMLMEDGVLLNLYEIQQLQMLCDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPS 133
SL + ML++ L+ Q+ M L + + +S W+ Q+ LP
Sbjct: 581 SLLSLKMLVK-SCFLDRVAANQMAMFLLLPLP--MPALLKATTGDSYWTSIQILQCALPF 637
Query: 134 NFD 136
+FD
Sbjct: 638 SFD 640
>B9GWX9_POPTR (tr|B9GWX9) DNA-directed RNA polymerase OS=Populus trichocarpa
GN=NRPD903 PE=3 SV=1
Length = 924
Score = 166 bits (420), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 161/561 (28%), Positives = 247/561 (44%), Gaps = 96/561 (17%)
Query: 15 VSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNLLSLSQDS 74
V INPL C PL DFDGDC+H + PQS+AA+ E+ EL ++++QL++ SG L L+ DS
Sbjct: 438 VKINPLICGPLSADFDGDCVHLFYPQSLAAKAEVLELFSVEKQLLSSHSGNLNLQLTTDS 497
Query: 75 LTAAYMLMEDGVLLNLYEIQQLQMLCDKKLTPPPSIIKAPSRNNSL---WSGKQLFSMLL 131
L + M+ + L QQL M L P P+++K N W+ Q+ M L
Sbjct: 498 LLSLKMMFK-ACFLGKSAAQQLAMFISPYL-PQPALLKV----NCFFPHWTAHQILQMAL 551
Query: 132 PSNFDYSFPPNGVSVSDGE----LTSSFESSGWLRDSECNIFQRLV-----ERFQDKTLN 182
P+ F+ S GE + S+F + RD ++ ++ E+ L
Sbjct: 552 PACFNCS----------GERFLIINSNFLKVDFNRDVVASVINEILISMFFEKGSGAVLK 601
Query: 183 LLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGLQEAEQACDFNQLLVD 242
Q +L E L GF +E+ S ++ + + +
Sbjct: 602 FFNSLQPMLMENLFSEGFSVS----------------LEDFSISRAVKQRIPESFKAISP 645
Query: 243 HYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHMFRNIQSLVDKYASKG 302
C+ L+ + N ++ L E HI R+++ V ++
Sbjct: 646 LLCN-----LRSTFN----ELVELQVENHI----------------RDVKQPVREFILTS 680
Query: 303 NAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCAAWNSEKGLNSMPMFS 362
+A + + S + K+VQ LGLQ S Y A+ L+ P
Sbjct: 681 SALGYLIDSKSDAAVTKVVQQIGFLGLQVSDRGKLYSKTLVEDLAS----HFLSKYPANL 736
Query: 363 NTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNADL--PGTLTRRLMFFM 420
S Q + ++++SF GL+ E AHS++ R+ + L PGTL + LM +
Sbjct: 737 FDYPSAQ----YGLIQNSFFHGLDAYEEMAHSISTREVIVRSSRGLSEPGTLFKNLMAIL 792
Query: 421 RDLYQAYDGTVRNLYGNQLIQFSYDTDKDSSCDSGFQEGTVGGEPVGALSACAISEAAYS 480
RD+ YDGTVRN+ N +IQF Y + S F GEPVG L+A A+S AY
Sbjct: 793 RDVVICYDGTVRNVSSNSIIQFEYGVKVGTESQSLFP----AGEPVGVLAATAMSNPAYK 848
Query: 481 ALGQPISLLETSPLLN-----LKNVLEC--GSRKKSGDQTVSLFLSDKLGKQRYGFEYAA 533
A +L+++P N +K +L C G + D+ V L+L+D + Y E AA
Sbjct: 849 A------VLDSTPSSNCSWDMMKEILLCKVGFKNDLADRRVILYLNDCGCGRNYCQERAA 902
Query: 534 LEVKNYLERVMFSDIVSTVMI 554
VKN+LE+V DI MI
Sbjct: 903 YLVKNHLEKVSLKDIAKCFMI 923
>J3L864_ORYBR (tr|J3L864) DNA-directed RNA polymerase OS=Oryza brachyantha
GN=OB01G54200 PE=3 SV=1
Length = 1576
Score = 166 bits (419), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 143/514 (27%), Positives = 248/514 (48%), Gaps = 40/514 (7%)
Query: 364 TLKSIQCYIP---HAVVESSFLTGLNPLECFAHSVANRDSSFSDNADL--PGTLTRRLMF 418
+ +SI+C+ P H V SS GL+P E HS+ R++ + L PG+L + +M
Sbjct: 718 SFRSIRCHNPLEAHGTVRSSIYHGLDPYEALLHSICERETIMYASKGLVEPGSLFKNMMA 777
Query: 419 FMRDLYQAYDGTVRNLYGNQLIQFSYDTDKDSSCDSGFQEGTVGGEPVGALSACAISEAA 478
+RD+ YDGT+R GN ++QF + S+C G+PVG L+A A++ AA
Sbjct: 778 RLRDVIACYDGTIRTSSGNLVLQFG--SMNPSNC-------MTPGDPVGILAATAVANAA 828
Query: 479 YSALGQPISLLETSPLLNLKNVL--ECGSRKKSGDQTVSLFLSDKLGKQRYGFEYAALEV 536
Y A+ P TS ++K VL S+ + + V L+LS + + E A L V
Sbjct: 829 YKAVLAPNQNNITS-WDSMKEVLLTRANSKTDTNCRKVILYLS-QCSCENESMERA-LTV 885
Query: 537 KNYLERVMFSDIVSTVMIMFTPQSSSLEIFNPWVCHFHLDKEIVARRKLTVHSVI---ES 593
+ L RV D + + I + Q++ + + V H HLDK+ + + + T+ V+ +
Sbjct: 886 RTCLRRVKVEDCTTEIAIKYQQQTT--QAADRLVGHVHLDKKRLNQMQTTMADVLHKCQE 943
Query: 594 LYRRYESLTKESKVTFPNLK-ISSNRKCSKEGGYASLNKEKEDVDCISVTIVESSRSSAK 652
++R+ + + T + + S R C + + N + V C+ + + +++ S
Sbjct: 944 VFRKNIKKRGQMRETLRTVTFVPSERVCDQH----TYNDRELQVSCLQLFL--TAKISES 997
Query: 653 LEAVRDLM----IPFLLGTVIKGFLEIKKVDILW---SNRSKVSNSYAGSSGELYLRVTM 705
E V LM P +L TVIKG +++ +++ + V + A G++ L +T+
Sbjct: 998 TERVVHLMTNAIFPVVLDTVIKGDPRVEEANLVRIEPESTCWVQSFGAEQKGKVALEITV 1057
Query: 706 --SSDGDSGRFWGVLINHCHRIMPMIDWTRSHPDNIHHFCSAYGIDAGRQYFLHSLASAT 763
+ +G WGV ++ C ++ +ID TRS P +I +GI + + L+ A
Sbjct: 1058 EKAVAAKTGNAWGVAMDACIPVIDLIDTTRSVPYDIQQVRQVFGISSTFEKVTQHLSKAV 1117
Query: 764 TETGKSILPKHLHLVANSLSASGEFVGLNAKGIGRQRKHASVSSPFVQACFSNPGTSFIK 823
KS+L HL VA+S++ +G+ G N+ G + V +PF+ A S F K
Sbjct: 1118 GMVTKSVLQDHLTTVASSMTCTGDLHGFNSSGYKATSQSLKVQAPFMDATLSTSTRCFEK 1177
Query: 824 AAKSGVLDDLQGCLDALAWGKCMSMGTSGQFDIM 857
AA D L + + +WG ++GT F+I+
Sbjct: 1178 AAAKAYSDQLGSIVSSCSWGNNAAIGTGSAFEIL 1211
Score = 66.6 bits (161), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 40/60 (66%)
Query: 14 VVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNLLSLSQD 73
+ INPL C PL DFDGDC+H + P+S++AR E+ EL +D+QL++ +G+ L D
Sbjct: 464 TMKINPLICGPLGADFDGDCVHIFYPRSLSARAEVTELFTVDKQLVSSHNGKLNFQLKND 523
>B9GM06_POPTR (tr|B9GM06) DNA-directed RNA polymerase OS=Populus trichocarpa
GN=NRPD902 PE=3 SV=1
Length = 842
Score = 160 bits (405), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 157/553 (28%), Positives = 251/553 (45%), Gaps = 80/553 (14%)
Query: 15 VSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNLLSLSQDS 74
V INPL C PL DFDGDC+H + PQS+AA+ E+ EL ++++QL++ SG L L+ DS
Sbjct: 356 VKINPLICGPLSADFDGDCVHLFYPQSLAAKAEVLELFSVEKQLLSSHSGNLNLQLTTDS 415
Query: 75 LTAAYMLMEDGVLLNLYEIQQLQMLCDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSN 134
L + M+ + L+ QQL M L P P+++K + W+ Q+ M LP+
Sbjct: 416 LLSLKMIFK-ACFLDKSAAQQLAMFVSPDL-PQPALLKV-NCIRPYWTAHQILQMALPTC 472
Query: 135 FDYS---FPPNGVSVSDGELTSSFESSGWLRDSECNIFQRLVERFQDKTLNLLYDAQKVL 191
F+ S F N +V + +S + + +IF E+ L Q +L
Sbjct: 473 FNCSGERFLINNSNVLKVDFNRDVVAS-MINEILISIF---FEKGSGAVLKFFNALQPLL 528
Query: 192 CEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGLQEAEQACDFNQLLVDHYCDFLSGS 251
E L GF ++ + + +QE+ + + LL +
Sbjct: 529 MENLFSEGFSVSLKDF----------SISQAVKQSIQESFKV--ISPLLCN--------- 567
Query: 252 LQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHMFRNIQSLVDKYASKGNAFLTMFKA 311
L+ + N ++ L E HI +++++ V ++ +A + +
Sbjct: 568 LRSTYN----ELVELQVENHI----------------QDVKTPVLEFILTSSALGYLIDS 607
Query: 312 GSKGNLLKLVQHSMCLGLQHS-LVRLSYRMPRELSCAAWNSEKGLNSMPMFSNTLKSIQC 370
S G + KLVQ LGLQ S +L + E + + S+ N + S
Sbjct: 608 KSDGAVAKLVQQIGFLGLQVSDRGKLYSKTLVEDLASHFQSKYPTNLLNYPSAQ------ 661
Query: 371 YIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNADL--PGTLTRRLMFFMRDLYQAYD 428
+ +++SSF GL+ E AHS++ R+ + L PGTL + LM +RD+ YD
Sbjct: 662 ---YGLIQSSFFHGLDAYEEMAHSISTREVIVRSSRGLSEPGTLFKNLMAILRDVVICYD 718
Query: 429 GTVRNLYGNQLIQFSYDTDKDSSCDSGFQEGTVGGEPVGALSACAISEAAYSALGQPISL 488
GTVRN+ N +IQ Y + S F GEPVG L+A A+S AY A +
Sbjct: 719 GTVRNVCSNSIIQSEYGVKVGAESQSLFP----AGEPVGVLAATAMSNPAYKA------V 768
Query: 489 LETSPLLN-----LKNVLEC--GSRKKSGDQTVSLFLSDKLGKQRYGFEYAALEVKNYLE 541
L+++P N +K +L C G + D+ V L+ + + + E AA VKN+LE
Sbjct: 769 LDSTPSSNSSWDMMKEILLCKVGFKNDQADRRVILYFNYCGCGREHCQEKAAFLVKNHLE 828
Query: 542 RVMFSDIVSTVMI 554
+V D+ MI
Sbjct: 829 KVSLKDVAKCFMI 841
>B9EWM0_ORYSJ (tr|B9EWM0) DNA-directed RNA polymerase OS=Oryza sativa subsp.
japonica GN=OsJ_04874 PE=3 SV=1
Length = 1528
Score = 153 bits (387), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 143/517 (27%), Positives = 241/517 (46%), Gaps = 53/517 (10%)
Query: 367 SIQCYIP---HAVVESSFLTGLNPLECFAHSVANRDSSFSDNADL--PGTLTRRLMFFMR 421
S C P + V SS GLNP E HS+ R+ + L PG+L + +M +R
Sbjct: 690 STNCCNPLEEYGTVRSSIYHGLNPYEALLHSICEREKIMRASKGLVEPGSLFKNMMSRLR 749
Query: 422 DLYQAYDGTVRNLYGNQLIQFSYDTDKDSSCDSGFQEGTVGGEPVGALSACAISEAAYSA 481
D+ YDG++R GN ++QF + S+C G+PVG L+A A++ AAY A
Sbjct: 750 DVTACYDGSIRTSSGNLVLQFG--SRDASNC-------VTPGDPVGILAATAVANAAYKA 800
Query: 482 LGQPISLLETSPLLNLKNVL--ECGSRKKSGDQTVSLFLSDKLGKQRYGFEYAALEVKNY 539
+ P + ++K VL ++ + + V L+L ++ + E A L ++
Sbjct: 801 VLAP-NQNNIISWDSMKEVLLTRASTKADANHRKVILYL-NQCSCENECMERA-LTIRAC 857
Query: 540 LERVMFSDIVSTVMIMFTPQSSSLEIFNPWVCHFHLDKEIVARRKLTVHSVIESLYRRYE 599
L R+ D + + I + Q++ + + V H HLDK+ + + + + SV+ +
Sbjct: 858 LRRIKLEDCTTEISIKYQQQAT--QAAHHLVGHIHLDKKQLNQIETIMDSVLHKCQETFR 915
Query: 600 SLTKESKVTFPNLK----ISSNRKCSKEGGYASLNKEKEDVDCI------SVTIVESSRS 649
+ K+ LK ISS C + + + +K V C+ S+T S +
Sbjct: 916 NNIKKKGSMREILKTVTFISSTSLCDQH----TDDDKKFQVSCLQFFLPGSITKNISEST 971
Query: 650 SAKLEAVRDLMIPFLLGTVIKGFLEIKKVDILWSNRSK---VSNSYAGSSGELYLRVTM- 705
++ + + + P +L TVIKG +++ +++ V +S A GE L +T+
Sbjct: 972 ERVIDFMTNAIFPIILDTVIKGDPRVEEANLVRIEPESTFWVQSSGAEQKGEAALEITVE 1031
Query: 706 -SSDGDSGRFWGVLINHCHRIMPMIDWTRSHPDNIHHFCSAYGIDAGRQYFLHSLASATT 764
++ +SG WGV +N C +M +ID TRS P Y I RQY S+ T
Sbjct: 1032 EAAAAESGNAWGVAMNACIPVMDLIDTTRSMP---------YDIQQVRQYLSKSVGMIT- 1081
Query: 765 ETGKSILPKHLHLVANSLSASGEFVGLNAKGIGRQRKHASVSSPFVQACFSNPGTSFIKA 824
KS+L +HL VA+S++ +G+ G N G + V +PF++A S F KA
Sbjct: 1082 ---KSVLQEHLTTVASSMTCTGDLHGFNNSGYKATCQSLKVQAPFMEATLSRSIQCFEKA 1138
Query: 825 AKSGVLDDLQGCLDALAWGKCMSMGTSGQFDIMHSEK 861
A D L + A +WG +GT F+I+ +++
Sbjct: 1139 AAKAYSDQLGNVVSACSWGNNAEIGTGSAFEILWNDE 1175
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 36/52 (69%)
Query: 14 VVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 65
+ INPL C PL DFDGDC+ + P+S++AR E EL +D+QL++ +G+
Sbjct: 430 TIKINPLICDPLGADFDGDCVQIFYPRSLSARAEAKELYTVDKQLVSSHNGK 481
>Q5JJW0_ORYSJ (tr|Q5JJW0) DNA-directed RNA polymerase OS=Oryza sativa subsp.
japonica GN=P0458E05.13 PE=3 SV=1
Length = 1568
Score = 145 bits (367), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 142/544 (26%), Positives = 245/544 (45%), Gaps = 67/544 (12%)
Query: 367 SIQCYIP---HAVVESSFLTGLNPLECFAHSVANRDSSFSDNADL--PGTLTRRLMFFMR 421
S C P + V SS GLNP E HS+ R+ + L PG+L + +M +R
Sbjct: 690 STNCCNPLEEYGTVRSSIYHGLNPYEALLHSICEREKIMRASKGLVEPGSLFKNMMSRLR 749
Query: 422 DLYQAYDGTVRNLYGNQLIQFSYDTDKDSSCDSGFQEGTVGGEPVGALSACAISEAAYSA 481
D+ YDG++R GN ++QF + S+C G+PVG L+A A++ AAY A
Sbjct: 750 DVTACYDGSIRTSSGNLVLQFG--SRDASNC-------VTPGDPVGILAATAVANAAYKA 800
Query: 482 LGQPISLLETSPLLNLKNVL--ECGSRKKSGDQTVSLFLSDKLGKQRYGFEYAALEVKNY 539
+ P + ++K VL ++ + + V L+L ++ + E A L ++
Sbjct: 801 VLAP-NQNNIISWDSMKEVLLTRASTKADANHRKVILYL-NQCSCENECMERA-LTIRAC 857
Query: 540 LERVMFSDIVSTVMIMFTPQSSSLEIFNPWVCHFHLDKEIVARRKLTVHSVIESLYRRYE 599
L R+ D + + I + Q++ + + V H HLDK+ + + + + SV+ +
Sbjct: 858 LRRIKLEDCTTEISIKYQQQAT--QAAHHLVGHIHLDKKQLNQIETIMDSVLHKCQETFR 915
Query: 600 SLTKESKVTFPNLK----ISSNRKCSKEGGYASLNKEKEDVDCI------SVTIVESSRS 649
+ K+ LK ISS C + + + +K V C+ S+T S +
Sbjct: 916 NNIKKKGSMREILKTVTFISSTSLCDQH----TDDDKKFQVSCLQFFLPGSITKNISEST 971
Query: 650 SAKLEAVRDLMIPFLLGTVIKGFLEIKKVDILWSNRSK---VSNSYAGSSGELYLRVTM- 705
++ + + + P +L TVIKG +++ +++ V +S A GE L +T+
Sbjct: 972 ERVIDFMTNAIFPIILDTVIKGDPRVEEANLVRIEPESTFWVQSSGAEQKGEAALEITVE 1031
Query: 706 -SSDGDSGRFWGVLINHCHRIMPMIDWTRSHPDNIHHFCSAYGIDAGRQ----------Y 754
++ +SG WGV +N C +M +ID TRS P +I +GI + +
Sbjct: 1032 EAAAAESGNAWGVAMNACIPVMDLIDTTRSMPYDIQQVRQVFGISSAFEKVTQVQLFPFL 1091
Query: 755 FLHSLASATTET-----------------GKSILPKHLHLVANSLSASGEFVGLNAKGIG 797
L + + ET KS+L +HL VA+S++ +G+ G N G
Sbjct: 1092 LLAEIQVTSAETLLVLCSFQYLSKSVGMITKSVLQEHLTTVASSMTCTGDLHGFNNSGYK 1151
Query: 798 RQRKHASVSSPFVQACFSNPGTSFIKAAKSGVLDDLQGCLDALAWGKCMSMGTSGQFDIM 857
+ V +PF++A S F KAA D L + A +WG +GT F+I+
Sbjct: 1152 ATCQSLKVQAPFMEATLSRSIQCFEKAAAKAYSDQLGNVVSACSWGNNAEIGTGSAFEIL 1211
Query: 858 HSEK 861
+++
Sbjct: 1212 WNDE 1215
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 36/52 (69%)
Query: 14 VVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 65
+ INPL C PL DFDGDC+ + P+S++AR E EL +D+QL++ +G+
Sbjct: 430 TIKINPLICDPLGADFDGDCVQIFYPRSLSARAEAKELYTVDKQLVSSHNGK 481
>I1NXC6_ORYGL (tr|I1NXC6) DNA-directed RNA polymerase OS=Oryza glaberrima PE=3 SV=1
Length = 1630
Score = 144 bits (364), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 139/561 (24%), Positives = 227/561 (40%), Gaps = 82/561 (14%)
Query: 374 HAVVESSFLTGLNPLECFAHSVANRDSSFSDNADL--PGTLTRRLMFFMRDLYQAYDGTV 431
+ +V SS+ GLNP E H+++ R++ + L PGTL + LM +RD+ YDGTV
Sbjct: 745 YGLVRSSYFHGLNPYEELVHAISTREAIVRSSRGLTEPGTLFKNLMALLRDVVICYDGTV 804
Query: 432 RNLYGNQLIQFSYDTDKDSSCDSGFQEGTVGGEPVGALSACAISEAAYSALGQPISLLET 491
RN+ +IQ +Y +D + D F GEPVG L+A AIS AY A+ T
Sbjct: 805 RNVCSKSIIQLNY--MEDDALD--FPSAIGPGEPVGVLAATAISNPAYKAVLDASQSNNT 860
Query: 492 SPLLNLKNVLECGSRKKSG--DQTVSLFLSDKLGKQRYGFEYAALEVKNYLERVMFSDIV 549
S +K +L+ SR K+ D+ V LFL+D +++ E AA+ V+ L R+ D
Sbjct: 861 S-WERMKEILQTTSRYKNDMKDRKVILFLNDCSCAKKFCKEKAAIAVQGCLRRITLEDCA 919
Query: 550 STVMI--------------MFTPQSSSLEIFNPWVCH----------------------- 572
+ + I + PQ L + P H
Sbjct: 920 TDICIEDGNWAAPAGFQHPVPPPQCKILPVPIPIPAHGSVKFPPVPIPAPEHLKYNIHVV 979
Query: 573 ---------------------FHLDKEIVARRKLTVHSVIESLYR---RYESLTKESKVT 608
HLD+ + R ++ +++ +Y
Sbjct: 980 RYQKQIGLDGTSEAAPALVGHIHLDRAHLERINISTEDILQKCQEVSGKYGKKKGHLSNL 1039
Query: 609 FPNLKISSNRKCSKEGGYASLNKEKEDVDCISVTIVESSRSSAKLEAVRDLMIPFLLGTV 668
F N+ S+ C ++ + + C+ + ++ S +E ++ L G +
Sbjct: 1040 FKNITFST---CDCSFTQKLVDGKLPKLPCLQFFVSDNMIVSESVERAVSVLADSLCGVL 1096
Query: 669 I----KGFLEIKKVDILWSN---RSKVSNSYAGSSGELYLRVTMSSDGD--SGRFWGVLI 719
+ KG I++ I+W S V N+ S GE + + + + G W +
Sbjct: 1097 LNTIIKGDPRIQEAKIVWVGSDATSWVKNTQKASKGEPAVEIIVEEEEALHIGDAWRTTM 1156
Query: 720 NHCHRIMPMIDWTRSHPDNIHHFCSAYGIDAGRQYFLHSLASATTETGKSILPKHLHLVA 779
+ C ++ +ID RS P I GI + L++ K +L HL LVA
Sbjct: 1157 DACIPVLNLIDIRRSIPYGIQQVRELLGISCAFDQVVQRLSTTVRMVAKDVLKDHLVLVA 1216
Query: 780 NSLSASGEFVGLNAKGIGRQRKHASVSSPFVQACFSNPGTSFIKAAKSGVLDDLQGCLDA 839
NS++ +G G N G + V PF ++ P F KAA+ D L + +
Sbjct: 1217 NSMTFTGNLNGFNNAGYKATFRSLKVQVPFTESTLITPMKCFEKAAEKCHSDSLGCVVSS 1276
Query: 840 LAWGKCMSMGTSGQFDIMHSE 860
+WGK + GT F I+ +E
Sbjct: 1277 CSWGKHAASGTGSSFQILWNE 1297
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 65/119 (54%), Gaps = 6/119 (5%)
Query: 14 VVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNLLSLSQD 73
V INPL C+P DFDGDC+H Y PQS+AA+ E EL ++++QL + SG+ L L D
Sbjct: 441 TVKINPLICAPFAADFDGDCVHIYYPQSLAAKAEALELFSVEKQLTSSHSGKVNLQLVSD 500
Query: 74 SLTAAYMLMEDGVLLNLYEIQQLQMLCDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLP 132
SL A M +L+ QL ML L P P++IK+ W+ Q+ LP
Sbjct: 501 SLLALKH-MSSRTMLSKEAANQLAMLVTCSL-PDPAVIKS----KPYWTISQIVQGALP 553
>B3T303_9ARCH (tr|B3T303) DNA-directed RNA polymerase OS=uncultured marine
crenarchaeote HF4000_ANIW93I24
GN=ALOHA_HF4000ANIW93I24ctg2g19 PE=3 SV=1
Length = 1264
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 214/917 (23%), Positives = 371/917 (40%), Gaps = 164/917 (17%)
Query: 6 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 65
VRVLP ++P C P DFDGD ++ ++PQS AR E L+ + QLI+ + G
Sbjct: 438 VRVLP-GKTFRLHPSVCPPYNADFDGDEMNLHVPQSEEARAEAMLLMRVQEQLISPRFGG 496
Query: 66 NLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLC--DKKLTPPPSIIKAPSRNNSLWSG 123
++ +D +T AY+L +D L E ML D+KL P K ++N SL++G
Sbjct: 497 PIIGALRDFITGAYLLTKDDTTLTKQEFSNYAMLGGYDEKLPEP----KIKNKNGSLYTG 552
Query: 124 KQLFSMLLPSNFDY------SFPPNG----VSVSDGELTSS-FESSGWLRDSECNIFQRL 172
KQLFS+ LPS+F++ S NG V + +GEL S + +G + +I R+
Sbjct: 553 KQLFSLFLPSDFNFVMTSKWSRGTNGKQKDVVIKNGELVSGVIDKTGIGAEEPESILHRI 612
Query: 173 VERFQDKTLN-LLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGLQEAE 231
+ + ++ N L ++ ++++ GF SYG + E
Sbjct: 613 AKDYGNEKANKFLNSVLIIIKQFITDYGF-----------------------SYGYSDLE 649
Query: 232 QACDFNQLLV-------DHYCDFL----SGSLQD--SDNVASIDMDSLNYEKHISAALSE 278
+ Q ++ D D + G+L+ +A + YE ++ A
Sbjct: 650 LSEKDRQAILTDLKETYDKVADIIVQKNKGTLKGLRGMTIAETAEAKITYE--LARARDR 707
Query: 279 VSVDAFRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSY 338
+ A ++ + NA M G++G+ L + Q + LG Q R
Sbjct: 708 AGITANSNL------------ADDNAGKIMATTGARGSALNVGQMAGALGQQS---RRGK 752
Query: 339 RMPRELSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANR 398
R+ S + K + P H V+S+F GL+ LE F H++ R
Sbjct: 753 RLHTGYSNRTLSHFKEHDDNPD------------SHGFVKSNFRDGLSVLEFFFHAMGGR 800
Query: 399 DSSFSDNA---DLPGTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTDKDSSCDSG 455
+ D A G + RRL+ + YDGTVR+ +G+ +IQF Y D S
Sbjct: 801 E-GLVDTAVRTQQSGYMQRRLINAFEHIRLEYDGTVRDPHGH-IIQFLYGEDGIDVAKSD 858
Query: 456 FQEG------------TVGGEPVGALSACAISEAAYSALGQPISLLETSPLLN------- 496
E G +IS+ ++ + L N
Sbjct: 859 HGEAFNINRLIESESIIDSGSKATKDEITSISKKYTKVFNPKLTSMVNDGLHNSKLSKEG 918
Query: 497 LKNVLECG-----SRKKSGDQTVSLFLSDKLGK-----QRYGFEYAALEVKNYLERVMFS 546
L+NV + G K Q V + + +G+ F A + KN +
Sbjct: 919 LENVCKKGLELYDKSKVEPGQAVGIVTAQSIGEPGTQMTLRTFHTAGIAEKNVT--LGLP 976
Query: 547 DIVSTVMIMFTPQSSSLEIFNPWVCHFHLDKEIVARRKLTVHSVIESLYRRYESLTKESK 606
I+ V P + S++I+ +K I R++ +V + L R+ E+ ++K
Sbjct: 977 RIIELVDARKKPSTPSMDIYLDKDSKSSKEKAIQIAREILQTTVADLLIRQAET-DYQTK 1035
Query: 607 VTFP--NLKISSNRKCSKEGGYASLNKEKE-----DVDCISVTIVESSRSSAKLEAVRDL 659
+T N+++ NR CS + +L K+ D + I++ +V S A + A+R+
Sbjct: 1036 ITLSVDNVRL-KNRGCSLDDIMTALETNKKFELKLDNNIITLQLVAES-DVATVVALRNK 1093
Query: 660 MIPFLLGTVIKGFLEIKKVDILWSNRSKVSNSYAGSSGELYLRVTMSSDGDSGRFWGVLI 719
+L T +KG +I+++ + N G+ ++ T S+ V+
Sbjct: 1094 ----VLKTTVKGVPDIERITLKEEN------------GDWLIQTTGSN------LAKVI- 1130
Query: 720 NHCHRIMPMIDWTRSHPDNIHHFCSAYGIDAGRQYFLHSLASATTETGKSILPKHLHLVA 779
++ +D +N+ + GI+A R ++ L + G + ++L LVA
Sbjct: 1131 -----VVKGVDKNNVRTNNVFEISTVLGIEAARTSLINELKATLENQGLEVDVRYLMLVA 1185
Query: 780 NSLSASGEFVGLNAKGIGRQRKHASVSSPFVQACFSNPGTSFIKAAKSGVLDDLQGCLDA 839
+ + G + IGR S S +A F + AAK G +++L+G +
Sbjct: 1186 DLMCHKGYL-----QQIGRHGIAGSKDSVLARAAFEITVPTIANAAKLGEIEELKGITEN 1240
Query: 840 LAWGKCMSMGTSGQFDI 856
+ G + +G SG DI
Sbjct: 1241 VIVGSLIPIG-SGTVDI 1256
>C5XUR7_SORBI (tr|C5XUR7) DNA-directed RNA polymerase OS=Sorghum bicolor
GN=Sb04g003760 PE=3 SV=1
Length = 554
Score = 143 bits (361), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 133/474 (28%), Positives = 204/474 (43%), Gaps = 70/474 (14%)
Query: 15 VSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNLLSLSQDS 74
V INPL C P DFDGDC+H Y PQS+AA+ E EL +++RQLI+ SG+ L L D
Sbjct: 126 VKINPLMCGPFSADFDGDCVHIYYPQSLAAKAEALELFSVERQLISSHSGKVNLQLGNDC 185
Query: 75 LTAAYMLMEDGVLLNLYEIQQLQMLCDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSN 134
L A M D +L+ QL M L P + PS W+ Q+ LP+
Sbjct: 186 LVAMKA-MSDRTVLHKELANQLAMFVPFSLLAPAVMKPIPS-----WTITQIVQGALPAK 239
Query: 135 FDYSFPPNGVSVSDGELTSSFESSGWLRDSECNIFQRLV-ERFQDKTLNLLYDAQKVLCE 193
+ + V D + ++DS ++ ++ E+ + L L + +L E
Sbjct: 240 L--TCQGDTHLVRDSTIIKLDLDKESVQDSFPDLVSSILREKGPREALQFLNVLEPLLME 297
Query: 194 WLSMTGFXXXXXXXXXXXXXCARENMMEEISYGLQEAEQACDFNQLLVDHYCDFLSGSLQ 253
+L + G + ++EE +Q NQ LV
Sbjct: 298 FLVLGGLSISLRDFN------VPKALLEEAQKNIQ--------NQSLV------------ 331
Query: 254 DSDNVASIDMDSLNYEKHISAALSEVSVDAFRHMFRNIQSLVDKYASKGNAFLTMFKAGS 313
L + ++ E+ V+ + ++++ + Y K + +
Sbjct: 332 ------------LEQSRCSTSQFVELRVE---NNLKSVKQQISDYVGKFSGLGLLIDPKK 376
Query: 314 KGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCAAWNSEKGLNSMPMFSNTLKSI-QCYI 372
+ ++ K+VQ +GLQ L R R L ++S F N +I Y
Sbjct: 377 EASMAKVVQQVGFVGLQ--LYREGKLYSRRLVEDCFSS---------FVNKHSAIGDEYS 425
Query: 373 PHA--VVESSFLTGLNPLECFAHSVANRDSSFSDNADL--PGTLTRRLMFFMRDLYQAYD 428
P A +V+SS+ GLNP E H++ R++ + L PGTL + LM +RD+ YD
Sbjct: 426 PEAFGLVQSSYFHGLNPYEELVHAICTRETMIRSSRGLSEPGTLFKNLMAILRDVVICYD 485
Query: 429 GTVRNLYGNQLIQFSYDTDKDSSCDSGFQEGTVGGEPVGALSACAISEAAYSAL 482
GTVRN+ N +IQ Y D ++ S GEPVG L+A AIS AY A+
Sbjct: 486 GTVRNICSNSIIQLKYGEDDEADSSSAVPP----GEPVGVLAATAISNPAYKAV 535
>E6N7C0_9ARCH (tr|E6N7C0) DNA-directed RNA polymerase OS=Candidatus Caldiarchaeum
subterraneum GN=CSUB_C1097 PE=3 SV=1
Length = 1254
Score = 139 bits (351), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 120/453 (26%), Positives = 204/453 (45%), Gaps = 57/453 (12%)
Query: 6 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 65
VRVLP ++ +NP C+P DFDGD ++ ++PQS A+ E EL+ ++ +I+ + G
Sbjct: 435 VRVLPYKTL-RLNPAVCTPYNADFDGDEMNLHVPQSEEAQTEARELLVVENNIISPRYGA 493
Query: 66 NLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCDKKLTPPPSIIKAPSRNNSLWSGKQ 125
++ + +D LT+ Y+L D L E+ L + PP +K P +W+GKQ
Sbjct: 494 PIIGVIRDFLTSLYLLTRDETKLTKSELAMLLAAIKYRGPIPPPAVKDP---EPMWTGKQ 550
Query: 126 LFSMLLPSNFDY----SFPPNGVSVSDGELTSSFESSGWLRDSECN-IFQRLVERF-QDK 179
+FS+LLP +F++ SF V V +G+L S G + + N I RL + D
Sbjct: 551 VFSLLLPKDFNHVTKSSFTNTEVVVKNGQLISGVIDKGSVGVEKANSILHRLARDYGSDV 610
Query: 180 TLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGLQEAEQACDFNQL 239
L + ++ ++ + GF + + +I +++E +F++L
Sbjct: 611 ARQFLDNVVRLANTFIELKGFSFAVDDLYVP------DQIHSDIQQIFKKSE--TEFSKL 662
Query: 240 LVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHMFRNIQSLVDKYA 299
L + +G ++ + + +E + LSE A + L+
Sbjct: 663 L----AQYQTGEVEIPPGMTA----EQAFEADVLKILSEARDSAGK--------LIRARV 706
Query: 300 SKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCAAWNSEKGLNSMP 359
S+ ++ M K G++G +L L Q +G Q +R R+ + + +
Sbjct: 707 SQNSSAFIMAKTGARGTMLNLDQMIAVVGQQSVRRERVHRGYRKRVLSFFKQDD------ 760
Query: 360 MFSNTLKSIQCYIPHA--VVESSFLTGLNPLECFAHSVANRDSSFSDNA---DLPGTLTR 414
P A V +SF++GL+PLE F H+V RD D A G + R
Sbjct: 761 -----------LSPRARGFVYNSFVSGLDPLEFFFHAVGGRD-GLVDTAVRTQQSGYMQR 808
Query: 415 RLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
RL+ + LY YDGTVR ++IQF+Y D
Sbjct: 809 RLINALEALYIDYDGTVRTADEGRIIQFAYGED 841
>I3D413_9ARCH (tr|I3D413) DNA-directed RNA polymerase OS=Candidatus Nitrosopumilus
salaria BD31 GN=rpoA_1 PE=3 SV=1
Length = 1263
Score = 134 bits (338), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 206/912 (22%), Positives = 358/912 (39%), Gaps = 155/912 (16%)
Query: 6 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 65
VRVLP ++P C P DFDGD ++ ++PQS AR E L+ + QLI+ + G
Sbjct: 438 VRVLP-GKTFRLHPSVCPPYNADFDGDEMNLHVPQSEEARAEAILLMRVQDQLISPRYGG 496
Query: 66 NLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCDKKLTPPPSIIKAPSRNNSLWSGKQ 125
++ +D +T AY+L +DG L++ E L ML K P K +++ ++GKQ
Sbjct: 497 PIIGALRDFVTGAYLLTKDGTTLSIQEFSNLAMLGGYKDALPKPATK--TKDGPAYTGKQ 554
Query: 126 LFSMLLPSNFDYSF----------PPNGVSVSDGELTSS-FESSGWLRDSECNIFQRLVE 174
LFS+ LP +F+Y PP V + +GEL S + + + ++ R+ +
Sbjct: 555 LFSLFLPKDFNYVLTSKWSKGTNGPPKDVVIKNGELISGVIDKTSIGAEEPESVLHRITK 614
Query: 175 RFQDKT-LNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGLQEAEQA 233
+ + N L ++ ++++ GF SYG + E
Sbjct: 615 DYGNAIGKNFLNSILIMVKQFITSYGF-----------------------SYGFGDLEVP 651
Query: 234 CDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISA--ALSEVSVDAFRHMFRNI 291
Q ++D D SD D +L + + A AL V+
Sbjct: 652 EKEKQQILD---DIQGTYDVISDLTDQYDKGTLKLTRGMKAEEALEAYIVNELGKARDKA 708
Query: 292 QSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCAAWNS 351
S + NA M G++G+ L + Q + LG Q R R+ A
Sbjct: 709 GSTANDSLDNSNAGKIMATTGARGSSLNVGQMAGALGQQS---RRGNRLHDGYQNRALTH 765
Query: 352 EKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNA---DL 408
+ +S P H V+S++ GL+ LE F H++ R+ D A
Sbjct: 766 FQEHDSNPD------------AHGFVKSNYREGLSALEFFFHAMGGRE-GLVDTAVRTQQ 812
Query: 409 PGTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTDKDSSCDSGFQEGTVGGEPVGA 468
G + RRL+ + + YDGTVR+ +G+ ++QF Y D S E P
Sbjct: 813 SGYMQRRLINALEHIRLEYDGTVRDPHGH-IVQFLYGEDGIDVQKSDHGEAF---NPSRL 868
Query: 469 LSACAISEAAYSALGQPISLLE---------------TSPLLN-------LKNVLECG-- 504
+ I+++ A I +L T LLN ++ V + G
Sbjct: 869 AESQTITDSGKKATKDEIEVLAKKYTKTFNPRLTSLVTEALLNSNLSKDGVEAVCKKGLS 928
Query: 505 ---SRKKSGDQTVSLFLSDKLGKQRY-----GFEYAALEVKNYLERVMFSDIVSTVMIMF 556
K Q V + + +G+ F +A ++ +N + ++ V
Sbjct: 929 LYNKAKVEPGQAVGIITAQSIGEPGTQMTLRTFHFAGIKERNVT--LGLPRLIELVDARK 986
Query: 557 TPQSSSLEIFNPWVCHFHLDKEIVARRKLTVHSVIESLYRRYESLTKESKVTFP---NLK 613
P + +++I+ LD+E R+ + L + +L S+ + L
Sbjct: 987 KPVTPTMDIY--------LDEESKKSREKAIEVARNVLQTKVSALISNSETDYSTQITLI 1038
Query: 614 ISSN----RKCS---KEGGYASLNKEKEDV--DCISVTIVESSRSSAKLEAVRDLMIPFL 664
+S N R CS E AS K K + + I++ +VE S +A + A+R+ +
Sbjct: 1039 LSPNRLKERGCSIAEVEASLASNKKFKMETTGELITLKLVEES-DTATVIAIRNK----V 1093
Query: 665 LGTVIKGFLEIKKVDILWSNRSKVSNSYAGSSGELYLRVTMSSDGDSGRFWGVLINHCHR 724
L T +KG +I++V ++ + V + GS+ L V
Sbjct: 1094 LNTTVKGVPDIERVTLVQKDDEWVIQT-TGSNIAKVLEVK-------------------- 1132
Query: 725 IMPMIDWTRSHPDNIHHFCSAYGIDAGRQYFLHSLASATTETGKSILPKHLHLVANSLSA 784
ID +N+ GI+A R + L + + G + +++ LV++ + +
Sbjct: 1133 ---GIDKRNVRTNNVFEIAGTLGIEAARNSLIDELNNTLGDQGLEVDNRYIMLVSDLMCS 1189
Query: 785 SGEFVGLNAKGIGRQRKHASVSSPFVQACFSNPGTSFIKAAKSGVLDDLQGCLDALAWGK 844
G + IGR + S +A F + AA G ++ L+G + + G
Sbjct: 1190 RGYM-----QQIGRHGIAGTKDSVLARAAFEITVPTIAHAALGGEIEHLKGITENVIVGS 1244
Query: 845 CMSMGTSGQFDI 856
+ +G SG D+
Sbjct: 1245 NIPIG-SGTVDL 1255
>D8T4Y5_SELML (tr|D8T4Y5) DNA-directed RNA polymerase (Fragment) OS=Selaginella
moellendorffii GN=SELMODRAFT_1456 PE=3 SV=1
Length = 350
Score = 134 bits (338), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 80/201 (39%), Positives = 115/201 (57%), Gaps = 7/201 (3%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
+I+L+ R+ P S INPL CSPL+GDFDGD LH Y PQ+ ARVE EL+ L +Q
Sbjct: 126 VIALTARIHPGKSF-RINPLVCSPLKGDFDGDRLHVYFPQAEDARVETRELMGLKQQFQA 184
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCDKKLTPPPSIIKAPSRNNSL 120
SG ++SL+QD L AAYML+ +IQQL + D+ P P+I+K +L
Sbjct: 185 LSSGNPVISLTQDMLVAAYMLVSRHSFFTAPQIQQLGLHADRWSLPDPAIVKP----RAL 240
Query: 121 WSGKQLFSMLLPSNFDYSFPPNGVSVSDGELTSSFESSGWLRDSECNIFQRLVERFQ-DK 179
W+G Q F +LLPS +S GV +SDGEL ++ + WL ++ + + E+F +
Sbjct: 241 WTGFQAFGLLLPSELAFS-TRTGVLISDGELVTAGDDGSWLGGGTDSLLRAIHEKFGVAE 299
Query: 180 TLNLLYDAQKVLCEWLSMTGF 200
+ L +L E+L + GF
Sbjct: 300 AIAYLDSCCSMLKEFLHIEGF 320
>I7AW35_9ASCO (tr|I7AW35) DNA-directed RNA polymerase (Fragment) OS=Metschnikowia
agaves PE=3 SV=1
Length = 872
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 140/567 (24%), Positives = 246/567 (43%), Gaps = 91/567 (16%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M++ V+V+P S+ +N SP DFDGD ++ ++PQS R E++++ A+ Q+++
Sbjct: 268 MMAHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSPETRAEMSQICAVPLQIVS 326
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCDK--KLTPPPSIIKAPSRNN 118
QS + ++ + QD+L + + + ++ + + PPP++IK
Sbjct: 327 PQSNKPVMGIVQDTLCGIRKMTLRDIFIEYEQVMNMLYWIPNWDGVIPPPAVIKP----K 382
Query: 119 SLWSGKQLFSMLLPSN-----FD-----YSFPPNGVSVSDGELTSSFESSGWLRDSECNI 168
LW+GKQL SM +P FD S G+ + DGE+ + + +
Sbjct: 383 PLWTGKQLLSMAIPKGIHLQRFDDGRDMLSPKDKGILIVDGEIIFGVVDKKTVGATGGGL 442
Query: 169 FQRLV-ERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGL 227
++ E+ L QKV+ WL GF A ++ M +++ +
Sbjct: 443 IHTVMREKGPQICAQLFSSIQKVVNYWLLHNGF------SIGIGDTIADKDTMRDVTITI 496
Query: 228 QEAEQACDFNQLLVDHYCDFLSG----SLQDSDNVASIDMDSLNYEKHISAALSEVSVDA 283
QEA+Q ++++D + L +L++S +E ++S L++ A
Sbjct: 497 QEAKQKV--QEIILDAQQNKLEPEPGMTLRES------------FEHNVSRVLNQARDTA 542
Query: 284 FRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRE 343
R N++ L N M +GSKG+ + + Q S C+G Q + R+P
Sbjct: 543 GRSAEMNLKDL--------NNVKQMVTSGSKGSFINISQMSACVGQQ---IVEGKRIPFG 591
Query: 344 LSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFS 403
+ ++P FS S + VE+S+L GL P E F H++A R+
Sbjct: 592 FAD---------RTLPHFSKDDYSPES---KGFVENSYLRGLTPQEFFFHAMAGREGLID 639
Query: 404 DNADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTDKDSSCDSGFQEGTV 461
G + RRL+ + D+ YDGT RN G+ +IQF Y D G +V
Sbjct: 640 TAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGD-IIQFVYGED-------GIDGTSV 691
Query: 462 GGEPVGALSACAIS-EAAYSALGQPISLLETSPLLNLKNVLECGSRKKSGDQTVSLFLSD 520
+ V + S E Y + LL+ + L+++LE G + K GD T+ L +
Sbjct: 692 EKQSVDTIPGPDASFEKRYR-----VDLLDEDNCI-LESLLESGKQIK-GDVTLQKVLDE 744
Query: 521 KLGKQRYGFEYAALEVKNYLERVMFSD 547
+ + LE + +L V+F +
Sbjct: 745 EYNQ--------LLEDRKFLREVVFPN 763
>Q5S1Y0_9HOMO (tr|Q5S1Y0) DNA-directed RNA polymerase (Fragment) OS=Boletellus
projectellus GN=RPB1 PE=3 SV=2
Length = 997
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 120/477 (25%), Positives = 211/477 (44%), Gaps = 71/477 (14%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M+S V+++P S+ +N P DFDGD ++ +IPQS R EL+++ + RQ+I+
Sbjct: 370 MMSHRVKLMPYSTF-RLNLSVTPPYNADFDGDEMNMHIPQSEETRAELSQIAWVPRQIIS 428
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCDK--KLTPPPSIIKAPSRNN 118
Q+ + ++ + QD+L L+ ++Q + + + P P+IIK
Sbjct: 429 PQANKPVMGIVQDTLCGIRKFTLRDTFLDWQQVQNILLWVPEWDGNVPTPAIIKP----K 484
Query: 119 SLWSGKQLFSMLLPSNFDYSFPP----------NGVSVSDGELTSSFESSGWLRDSECNI 168
LW+GKQ+ SM++P + P +G+ V +GE+ + ++ +
Sbjct: 485 PLWTGKQIISMVIPRGINIHRAPEPKSSNPLFDDGMMVDNGEILFGIVDKKTVGATQGGL 544
Query: 169 FQRLV-ERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGL 227
+ E+ + T ++ Q V+ WL GF A N+ME I+ +
Sbjct: 545 IHVVFREKGPEATRSVFTGIQMVVNFWLFHNGF------SIGIGDTIAGPNVMEFITRRI 598
Query: 228 QEAEQACDFNQLLVDHYCDFLSG----SLQDSDNVASIDMDSLNYEKHISAALSEVSVDA 283
++ +Q +++ D Y D L ++++S +E + L+ D+
Sbjct: 599 KDKKQQV--AEIIEDAYNDRLKPMPGMTIRES------------FESKVERELNRARDDS 644
Query: 284 FRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRE 343
++ +N++ + N M AGSKG+ + + Q S+C+G Q R R+P
Sbjct: 645 GQYAQKNLK--------EDNNVKQMVTAGSKGSYINISQMSVCVGQQSVEGR---RIPFG 693
Query: 344 LSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFS 403
++P F+ S + VE+S+L GL P E F H++A R+
Sbjct: 694 FRH---------RTLPHFTKDDFSPEA---RGFVENSYLRGLTPQEFFFHAMAGREGLID 741
Query: 404 DNADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTDKDSSCDSGFQE 458
G + RRL+ + D+ YDGTVRN G+ L+QF Y D D F E
Sbjct: 742 TAVKTAETGYIQRRLVKALEDVMVCYDGTVRNSLGD-LVQFIYGED---GMDGAFIE 794
>M4N7H2_9ASCO (tr|M4N7H2) RNA polymerase I (Fragment) OS=Ascoidea asiatica PE=4
SV=1
Length = 896
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 126/493 (25%), Positives = 209/493 (42%), Gaps = 75/493 (15%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M+ V+V+P S+ IN +P DFDGD ++ ++PQS R EL LVA+ Q+++
Sbjct: 292 MMCHRVKVMPFSTF-RINLSVTTPYNADFDGDEMNLHVPQSAETRAELQNLVAVPLQIVS 350
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCDK--KLTPPPSIIKAPSRNN 118
QS + ++ + QD+L + + L + Q+ + PPP+I+K
Sbjct: 351 PQSNKPVMGIVQDTLCGVRKMTVKDIFLEYDHVMQICFWVKNWDGIIPPPAILKP----K 406
Query: 119 SLWSGKQLFSMLLPSN-----FD-----YSFPPNGVSVSDGELTSSFESSGWLRDSECNI 168
LW+GKQ+ S+ +P FD S NG+ + DGEL + + + +
Sbjct: 407 PLWTGKQMLSLAVPKGIHLLRFDEKTTLLSPSDNGMLIIDGELMFGVVNKKTVGATNGGL 466
Query: 169 FQRLV-ERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGL 227
++ E+ +L + QKV+ WL GF A M +I+ +
Sbjct: 467 IHTVMREKGHKVCADLFGNIQKVVNYWLLHNGF------SIGIGDTIADAETMRKINSTI 520
Query: 228 QEAEQACDFNQLLVDHYCDFL----SGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDA 283
+A+Q L++D + L +L++S +E +S L++ DA
Sbjct: 521 ADAKQKV--QDLILDTQANRLELEPGMTLRES------------FESKVSRVLNQARDDA 566
Query: 284 FRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRE 343
N++ L N M +GSKG+ + + Q S C+G Q + R+P
Sbjct: 567 GHCAEENLKDL--------NNVKQMVISGSKGSFINISQMSACVGQQ---IVEGKRIPFG 615
Query: 344 LSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFS 403
S ++P F+ S + VE+S+L GL P E F H++A R+
Sbjct: 616 FSD---------RTLPHFTKDDFSPES---KGFVENSYLRGLTPQEFFFHAMAGREGLID 663
Query: 404 DNADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTDKDSSCDSGFQEGTV 461
G + RRL+ + D+ YDGT RN G +IQF Y D G V
Sbjct: 664 TAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSVG-AVIQFIYGED-------GLDATQV 715
Query: 462 GGEPVGALSACAI 474
+P+ + +
Sbjct: 716 ENQPIDTIPGSTV 728
>A9TA93_PHYPA (tr|A9TA93) DNA-directed RNA polymerase (Fragment)
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_51820 PE=3 SV=1
Length = 340
Score = 129 bits (325), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 107/374 (28%), Positives = 176/374 (47%), Gaps = 50/374 (13%)
Query: 37 YIPQSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQL 96
++PQ+ A E +EL+ + QLIN Q G++ +L++DS AY++ + LN E+ QL
Sbjct: 2 FVPQTSEAHAEAHELLKVSNQLINPQGGQSNSALTEDSRLGAYLMTSSCIFLNKMEVSQL 61
Query: 97 QMLCDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFDYSFP--------PNGVSVSD 148
L P P+I+K+P++ LW+G+QL+S +LP Y G+ +S+
Sbjct: 62 STSSLVSL-PIPAILKSPNKREPLWTGQQLYSTILPEGICYKVTDKKFSTDVERGILISN 120
Query: 149 GELTSSFESSGWLRDSECNIFQRLVERFQDKTLNLLY--DAQKVLCEWLSMTGFXXXXXX 206
GEL +S WL D+ + ++ Q L+Y AQ++ +L GF
Sbjct: 121 GELLVCNGNSNWLGDA-FDALTAVIHTSQGPAAALVYLNRAQELANLFLRDRGFSVGLQD 179
Query: 207 XXXXXXXCA-RENMMEEISYGLQEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDS 265
+EE+S G +EA F LL+D + + +
Sbjct: 180 FQLSRDRSQLLRRRLEEVSIGNREAL----FRTLLMDEH----------------VQREE 219
Query: 266 LNYEKHISAALSEVSVDAFRHMFR-NIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHS 324
LN AL +V+VD F+ FR + + L Y + N L M AGSKG++ KLVQ +
Sbjct: 220 LNKNPASKRALDKVAVDRFQTKFRESTKRLAKDYCKRMNPLLVMINAGSKGSMSKLVQQT 279
Query: 325 MCLGLQHSLVRLSYRMPRELSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTG 384
+ +GLQ L + + +P LN +P F + + ++ SS+L G
Sbjct: 280 ISVGLQ--LFKGEHLLP-------------LN-VPDFLPSANLSGYWESRGIITSSYLDG 323
Query: 385 LNPLECFAHSVANR 398
L+PL+ F H++++R
Sbjct: 324 LSPLQFFIHTLSSR 337
>A7J588_9LECA (tr|A7J588) DNA-directed RNA polymerase (Fragment) OS=Heterodermia
vulgaris GN=RPB1 PE=3 SV=1
Length = 996
Score = 129 bits (323), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 118/459 (25%), Positives = 202/459 (44%), Gaps = 57/459 (12%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M+ VRV+P S+ +N SP DFDGD ++ ++PQS R E+N+L + +++
Sbjct: 372 MMGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVNQLCMVPLNIVS 430
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCDK--KLTPPPSIIKAPSRNN 118
Q L+ + QD+L Y + V LN ++ + + + + P P+++K
Sbjct: 431 PQRNSPLMGIVQDTLCGIYKICRRDVFLNQEQVMNILLWVPEWDGIIPQPAVLKP----T 486
Query: 119 SLWSGKQLFSMLLPSNF------DYS-FPPNGVSVSDGELTSSFESSGWLRDSECNIFQR 171
LW+GKQ+ S+++P+ DY+ +G+ VS GEL + + + I
Sbjct: 487 PLWTGKQIVSLVIPAGLNLVKGSDYAPLKDDGIFVSSGELMFGLLNKKVVGAAMGGIIHI 546
Query: 172 LV-ERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGLQEA 230
+ E+ + +N AQ V+ WL GF ++EE + Q+
Sbjct: 547 VYNEKGPEAAMNFFNGAQAVVNYWLLHNGFSIGIGDTIPDRETI---RLIEE-AVNAQKR 602
Query: 231 EQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHMFRN 290
E A + Q+ + D L G NV +E +S AL++ DA +
Sbjct: 603 EVA-EITQMATESRLDTLPGM-----NVRE------TFESRVSKALNKARDDAGTVTEDS 650
Query: 291 IQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCAAWN 350
++ L N M ++GSKG+ + + Q + +G Q + R+P
Sbjct: 651 LKDL--------NNATQMARSGSKGSTINISQMTAVVGQQSVEGK---RIPFGFK----- 694
Query: 351 SEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNADLP- 409
++P F+ S + VE+S+L GL P E F H++A R+
Sbjct: 695 ----YRTLPHFTKDDYSPES---RGFVENSYLRGLTPTEFFFHAMAGREGPIDTAVKTAE 747
Query: 410 -GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + D+ YDGT+RN G+ ++QF Y D
Sbjct: 748 TGYIQRRLVKALEDVMAKYDGTIRNSLGD-IVQFVYGED 785
>A1YIA8_9ASCO (tr|A1YIA8) DNA-directed RNA polymerase (Fragment) OS=Taphrina
deformans GN=RPB1 PE=3 SV=1
Length = 1001
Score = 129 bits (323), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 118/462 (25%), Positives = 197/462 (42%), Gaps = 60/462 (12%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M+ VRV+P S+ +N SP DFDGD ++ ++PQS R E+ E+ + RQ++
Sbjct: 378 MMGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEITEICMVPRQILA 436
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCD--KKLTPPPSIIKAPSRNN 118
Q+ + + + QD+L + + + M + PPP+I+K
Sbjct: 437 PQANKPCMGIVQDALCGIRKFTIRDTFMAKSHVMNILMWVPGWNGIVPPPAILKP----Q 492
Query: 119 SLWSGKQLFSMLLPSNFDYSF--------PPN--GVSVSDGELTSSFESSGWLRDSECNI 168
LW+GKQ+ SM++P ++S PN G+ + DGE+ + + S+ +
Sbjct: 493 QLWTGKQILSMVIPKGINHSRNDDKQGLDNPNDVGMMIEDGEILYGVVNKKTVGSSQGGL 552
Query: 169 FQRLV-ERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGL 227
++ E+ + + Q V+ W GF A MEEI+ +
Sbjct: 553 IHIIMKEKGWEACRDFFTATQMVVNYWFLHNGF------SIGIGDTIADRQTMEEITNEI 606
Query: 228 QEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHM 287
+A+ + G + D+ + + A +S+V A +
Sbjct: 607 AKAKLK--------------VQGIVSDAQLNKLKQEPGMTLRESFEAGVSQVLNGARDTV 652
Query: 288 FRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCA 347
+N +S + SK NA M AGSKG+ + + Q S C+G Q +V R+P
Sbjct: 653 GKNAESSL----SKQNAVKQMVIAGSKGSFINISQMSACVGQQ--MVE-GKRIPYGFK-- 703
Query: 348 AWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNAD 407
++P F+ S + VE+S+L GL P E F H++A R+
Sbjct: 704 -------FRTLPHFTKDDYSPES---RGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVK 753
Query: 408 LP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + D+ YDGTVRN G+ +I F Y D
Sbjct: 754 TAETGYIQRRLVKALEDVGVKYDGTVRNSLGD-IINFVYGED 794
>I7B909_9ASCO (tr|I7B909) DNA-directed RNA polymerase (Fragment) OS=Hyphopichia
burtonii PE=3 SV=1
Length = 872
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 123/466 (26%), Positives = 206/466 (44%), Gaps = 68/466 (14%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M++ V+V+P S+ +N SP DFDGD ++ ++PQS R EL+++ A+ Q+++
Sbjct: 268 MMAHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSPETRAELSQICAVPLQIVS 326
Query: 61 GQSGRNLLSLSQDSLTAAY-MLMEDGVLLNLYEIQQLQMLCD-KKLTPPPSIIKAPSRNN 118
QS + ++ + QD+L M + D + + L + + + PPP+I+K
Sbjct: 327 AQSNKPVMGIVQDTLCGIRKMTLRDSFIEYDQVMNMLYWIPNWDGVIPPPAIVKP----K 382
Query: 119 SLWSGKQLFSMLLPSN-----FD-----YSFPPNGVSVSDGELTSSFESSGWLRDSECNI 168
LWSGKQL SM +P FD S NG+ + DGE+ + + +
Sbjct: 383 PLWSGKQLLSMAIPKGIHLQRFDDGKNLLSPKDNGMLIVDGEIMFGVVDKKTVGATGGGL 442
Query: 169 FQRLVERFQDKTLNLLYDA-QKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGL 227
++ + L+ A QKV+ WL GF A M ++ +
Sbjct: 443 IHTVMREKGSQVCAQLFSAIQKVVNFWLLHNGF------SIGIGDTIADSETMRTVTTTI 496
Query: 228 QEAEQACDFNQLLVDHYCDFLSG----SLQDSDNVASIDMDSLNYEKHISAALSEVSVDA 283
QEA+ ++++D + L +L++S +E ++S L++ A
Sbjct: 497 QEAKDKV--QEIILDAQSNKLDPEPGMTLRES------------FEHNVSRVLNQARDTA 542
Query: 284 FRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRE 343
R N++ L N M +GSKG+ + + Q S C+G Q + R+P
Sbjct: 543 GRSAEMNLKDL--------NNVKQMVTSGSKGSFINISQMSACVGQQ---IVEGKRIPFG 591
Query: 344 LSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFS 403
+ S+P F+ S + VE+S+L GL P E F H++A R+
Sbjct: 592 FAD---------RSLPHFTKDDYSPES---KGFVENSYLRGLTPQEFFFHAMAGREGLID 639
Query: 404 DNADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + D+ YDGT RN G+ +IQF Y D
Sbjct: 640 TAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGD-IIQFVYGED 684
>A8A925_IGNH4 (tr|A8A925) DNA-directed RNA polymerase OS=Ignicoccus hospitalis
(strain KIN4/I / DSM 18386 / JCM 14125) GN=Igni_0243
PE=3 SV=1
Length = 889
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 122/470 (25%), Positives = 200/470 (42%), Gaps = 79/470 (16%)
Query: 6 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 65
VRVLP + PL C P DFDGD ++ ++PQS AR E EL+ +++ +++ + G
Sbjct: 444 VRVLP-GKTFRLCPLVCPPYNADFDGDEMNLHVPQSEEARAEALELMLVEKHILSPRYGG 502
Query: 66 NLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCDKKLTPPPSIIKAPSRNNSLWSGKQ 125
++ QD ++ AY+L LL+ ++Q+L + + P I +P ++W+GKQ
Sbjct: 503 PIIGGLQDYISGAYLLTTVATLLDRSDVQELLGVTGYEGELPEPAILSP---KTVWTGKQ 559
Query: 126 LFSMLLPSNFDYSFPPNGVSVSDGELTSS-----FESSGWLRDSEC-------------- 166
LFS+ LP +F+YS N +S GEL ++S +RD E
Sbjct: 560 LFSVFLPKDFNYSGKAN---ISTGELKCDDEYCFYDSFVVVRDGELVEGVLDKKSIGHEQ 616
Query: 167 --NIFQRLVERFQDKTLNLLYD-AQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEI 223
++ +V + + +YD A K+ ++ GF A++ + E +
Sbjct: 617 PKSLMHWIVYEYGPEKGREIYDRAFKMFLRFIEKRGFTTRYDDVRLPPE--AKKEIEEVL 674
Query: 224 SYGLQEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDA 283
+E E+ + DF +G L+ + + L + +D
Sbjct: 675 KEAYEEVEKLIE----------DFKNGLLEPLPG------------RTLEETLELMIMDV 712
Query: 284 FRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQH---SLVRLSYRM 340
+ KY S N + M KAG++GN+L L Q + LG Q ++ YR
Sbjct: 713 LAKARDKAGEIAAKYLSPLNNAVIMAKAGARGNILNLTQMAALLGQQSVRGERIKRGYRK 772
Query: 341 PRELSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDS 400
R L W + + ++ H SF GL P E F H+ R+
Sbjct: 773 -RTLPHFEW------------GDISPDARGFVKH-----SFYEGLTPTEVFFHAAGGRE- 813
Query: 401 SFSDNA---DLPGTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
D A G + RRL+ ++DL YDGTV++ +G L Q Y D
Sbjct: 814 GLVDTAVRTSQSGYMQRRLINALQDLKVDYDGTVKDAWG-ALYQSVYGDD 862
>I7B591_9ASCO (tr|I7B591) DNA-directed RNA polymerase (Fragment) OS=Priceomyces
haplophilus PE=3 SV=1
Length = 867
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 126/471 (26%), Positives = 215/471 (45%), Gaps = 78/471 (16%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M++ V+V+P S+ +N SP DFDGD ++ ++PQS R EL+E+ A+ Q+++
Sbjct: 268 MMAHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSPETRAELSEICAVPLQIVS 326
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML-----CDKKLTPPPSIIKAPS 115
QS + ++ + QD+L + + ++ YE Q + ML D ++ P P+IIK
Sbjct: 327 PQSNKPVMGIVQDTLCGIRKMTLRDIFID-YE-QVMNMLYWIPNWDGRI-PSPAIIKP-- 381
Query: 116 RNNSLWSGKQLFSMLLPSN-----FD-----YSFPPNGVSVSDGELTSSFESSGWLRDSE 165
LW+GKQ+ SM +P FD S NG+ + DGE+ + +
Sbjct: 382 --KPLWTGKQILSMAIPKGIHLQRFDDGMNLLSAKDNGMLIIDGEIIFGVVDKKTVGATG 439
Query: 166 CNIFQRLVERFQDKTLNLLYDA-QKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEIS 224
+ ++ K L+++ QKV+ WL GF A + M++++
Sbjct: 440 GGLIHTVMREKGPKACAQLFNSIQKVVNYWLLHNGF------SIGIGDTIADASTMKDVT 493
Query: 225 YGLQEAEQACDFNQLLVDHYCDFLSG----SLQDSDNVASIDMDSLNYEKHISAALSEVS 280
+QEA++ ++++D + L +L++S +E ++S L++
Sbjct: 494 NTIQEAKKKV--QEIILDAQQNRLDPEPGMTLRES------------FEHNVSRVLNQAR 539
Query: 281 VDAFRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRM 340
A R N++ L N M +GSKG+ + + Q S C+G Q + R+
Sbjct: 540 DTAGRSAEMNLKDL--------NNVKQMVVSGSKGSFINISQMSACVGQQ---IVEGKRI 588
Query: 341 PRELSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHA--VVESSFLTGLNPLECFAHSVANR 398
P S S+P F+ Y P + VE+S+L GL P E F H++A R
Sbjct: 589 PFGFSD---------RSLPHFTK-----DNYSPESKGFVENSYLRGLTPQEFFFHAMAGR 634
Query: 399 DSSFSDNADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
+ G + RR++ + D+ YDGT RN G+ +IQF Y D
Sbjct: 635 EGLIDTAVKTAETGYIQRRIIKALEDIMVHYDGTTRNSLGD-VIQFLYGED 684
>Q8MX30_NAEGR (tr|Q8MX30) DNA-directed RNA polymerase (Fragment) OS=Naegleria
gruberi GN=RPB1 PE=3 SV=1
Length = 1590
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 128/477 (26%), Positives = 209/477 (43%), Gaps = 80/477 (16%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M+ ++V+P S+ +N +P DFDGD ++ ++PQS+ + EL EL + R +I
Sbjct: 388 MMGHRIKVMPYSTF-RMNLSVTTPYNADFDGDEMNLHVPQSLQTKAELLELTMVPRNIIT 446
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLC-------DKKLTPPPSIIKA 113
QS R +++L QD+L AA L V + + L M C D KL P P+I+K
Sbjct: 447 PQSNRPVIALVQDTLLAASKLTRRDVFI----AKDLMMNCLMHLIDFDGKL-PVPAILKP 501
Query: 114 PSRNNSLWSGKQLFSMLLPS------------------NFDYSFPP--NGVSVSDGELTS 153
LW+GKQLF+ LLP + D+ P V + GEL S
Sbjct: 502 ----KPLWTGKQLFTFLLPKVNLENTSSTHEDLTDKKDHLDHDIPEFDTKVLIDRGELVS 557
Query: 154 SFESSGWLRDSECNIFQRLV-ERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXX 212
L S ++ +V E+ ++ L Q+V+ WL GF
Sbjct: 558 GVLDKKSLGSSHGSLIHIIVNEKGVNEGKKFLGQCQRVINHWLINRGF------SIGIGD 611
Query: 213 XCARENMMEEISYGLQEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHI 272
A + ME+I +++AE+ +L+V D G L+ ++ +I ++E +
Sbjct: 612 TIADKATMEQIEETIRKAEKDV---KLIVK---DAQEGKLR-AEAGRTIQQ---SFENQV 661
Query: 273 SAALSEVSVDAFRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHS 332
+ L++ DA ++++ N +M AGSKG+ + + Q C+G Q+
Sbjct: 662 NKVLNKAREDAGNKAKKSLKD--------DNNIKSMVTAGSKGSYINISQIIACVGQQNV 713
Query: 333 LVRLSYRMPRELSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFA 392
+ R+P ++P F+ + V +S+L GL P E F
Sbjct: 714 EGK---RIPYGFRN---------RTLPHFAQDDHGPES---RGFVANSYLRGLTPQEFFF 758
Query: 393 HSVANRDSSFSDNADL--PGTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
H++ R+ G + RRL+ M D+ YDGTVR+ GN ++QF Y D
Sbjct: 759 HTMGGREGLIDTAVKTSETGYIQRRLIKAMEDIMVKYDGTVRDAQGN-VVQFLYGED 814
>A3MXZ0_PYRCJ (tr|A3MXZ0) DNA-directed RNA polymerase OS=Pyrobaculum calidifontis
(strain JCM 11548 / VA1) GN=Pcal_2092 PE=3 SV=1
Length = 884
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 116/469 (24%), Positives = 193/469 (41%), Gaps = 69/469 (14%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M+ V+VLP ++ C P DFDGD ++ ++PQ+ AR E L+ +++ +I
Sbjct: 440 MMGHLVKVLP-GRTFRLHLAVCPPYNADFDGDEMNLHVPQTEEARAEARTLMLVEKHIIT 498
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCDKKLTPPPSIIKAPSRNNSL 120
+ G ++ QD + AY+L L E+ L PP I P L
Sbjct: 499 PRYGGAIIGARQDYIIGAYLLSHKSTFLTKKEVAYLLGAGKSAEDPPEPAILHPV---EL 555
Query: 121 WSGKQLFSMLLPSNFDYSFPP---------------NGVSVSDGELTSSFESSGWLRDSE 165
W+GKQ+ S LP + ++ P + V +G L + +
Sbjct: 556 WTGKQIISHFLPKDLNWVQPTAFKSKCQDAYTCDGDEWIIVINGNLVKGVLDKKSIGAEQ 615
Query: 166 CN-IFQRLVERFQDKTLNLLYDAQ-KVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEI 223
+ ++ R+ + + D+ ++ WL + GF A + + + I
Sbjct: 616 VDSLWHRIARDYPPEVAGRWLDSSLRLFLRWLDLRGFTFGMDSVYLPKE--AYDELDKLI 673
Query: 224 SYGLQEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDA 283
GL++A++ +F SG L+ + +E I+ LS V DA
Sbjct: 674 ESGLKKADELIQ----------EFKSGRLEAMPGFTVEE----TFENKITEVLSRVREDA 719
Query: 284 FRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQH---SLVRLSYRM 340
++V+KY K + M K G++G+++ +VQ LG Q +R YR
Sbjct: 720 --------ATVVEKYIRKNSEGYLMAKTGARGSIVNIVQMVATLGQQTIRGERIRRGYRT 771
Query: 341 PRELSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDS 400
++P F + I Y+ V+S F GL+P+E F H+ A RD
Sbjct: 772 ---------------RTLPHFP--VGDIGAYV-GGFVKSCFRCGLSPVEYFFHAAAGRDG 813
Query: 401 SFSDNADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ ++D+Y AYDGTVR G+ L+Q Y D
Sbjct: 814 LIDTAVRTAQSGYMQRRLINALQDVYVAYDGTVR-FSGSTLLQVLYGED 861
>G3AI95_SPAPN (tr|G3AI95) DNA-directed RNA polymerase OS=Spathaspora passalidarum
(strain NRRL Y-27907 / 11-Y1) GN=SPAPADRAFT_134208 PE=3
SV=1
Length = 1748
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 125/470 (26%), Positives = 207/470 (44%), Gaps = 76/470 (16%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M+ V+V+P S+ +N SP DFDGD ++ ++PQS R EL+++ A+ Q+I+
Sbjct: 463 MMCHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSPETRAELSQICAVPLQIIS 521
Query: 61 GQSGRNLLSLSQDSLTAAY-MLMEDGVLLNLYEIQQLQMLCD-----KKLTPPPSIIKAP 114
QS + ++ + QD+L M + D + E Q+ +C + PPP+I+K
Sbjct: 522 PQSNKPVMGIVQDTLCGIRKMTLRDTYI----EFDQVMNMCYWIPNWDGVIPPPAIVKP- 576
Query: 115 SRNNSLWSGKQLFSMLLPSN-----FD-----YSFPPNGVSVSDGELTSSFESSGWLRDS 164
LW+GKQL SM +P FD S G+ + DGE+ + +
Sbjct: 577 ---KPLWTGKQLLSMAIPKGIHLQRFDGGRDLLSAKDTGMLIVDGEIMFGVVDKKTVGAT 633
Query: 165 ECNIFQRLV-ERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEI 223
+ ++ E+ L QKV+ WL GF A + M++I
Sbjct: 634 GGGLIHTVMREKGPQVCAQLFSSIQKVVNYWLLHNGF------SIGIGDTIADASTMKDI 687
Query: 224 SYGLQEAEQACDFNQLLVDHYCDFLSG----SLQDSDNVASIDMDSLNYEKHISAALSEV 279
+ +QEA+ ++++D + L +L++S +E ++S L++
Sbjct: 688 TTTIQEAK--TKVQEIILDAQQNRLEPEPGMTLRES------------FEHNVSRVLNQA 733
Query: 280 SVDAFRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYR 339
A R N++ L N M +GSKG+ + + Q S C+G Q + R
Sbjct: 734 RDTAGRSAEMNLKDL--------NNVKQMVTSGSKGSFINISQMSACVGQQ---IVEGKR 782
Query: 340 MPRELSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRD 399
+P + S+P F+ S + VE+S+L GL P E F H++A R+
Sbjct: 783 IPFGFAD---------RSLPHFTKDDYSPES---KGFVENSYLRGLTPQEFFFHAMAGRE 830
Query: 400 SSFSDNADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + D+ YDGT RN G+ +IQF Y D
Sbjct: 831 GLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGD-IIQFIYGED 879
>D2VNK8_NAEGR (tr|D2VNK8) DNA-directed RNA polymerase OS=Naegleria gruberi
GN=NAEGRDRAFT_51024 PE=3 SV=1
Length = 1757
Score = 128 bits (321), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 128/477 (26%), Positives = 210/477 (44%), Gaps = 80/477 (16%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M+ ++V+P S+ +N +P DFDGD ++ ++PQS+ + EL EL+ + R +I
Sbjct: 432 MMGHRIKVMPYSTF-RMNLSVTTPYNADFDGDEMNLHVPQSLQTKAELLELMMVPRNIIT 490
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLC-------DKKLTPPPSIIKA 113
QS R +++L QD+L AA L V + + L M C D KL P P+I+K
Sbjct: 491 PQSNRPVIALVQDTLLAASKLTRRDVFI----AKDLMMNCLMHLIDFDGKL-PVPAILKP 545
Query: 114 PSRNNSLWSGKQLFSMLLPS------------------NFDYSFPP--NGVSVSDGELTS 153
LW+GKQLF+ LLP + D+ P V + GEL S
Sbjct: 546 ----KPLWTGKQLFTFLLPKVNLENTSSTHEDLTDKKDHLDHDIPEFDTKVLIDRGELVS 601
Query: 154 SFESSGWLRDSECNIFQRLV-ERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXX 212
L S ++ +V E+ ++ L Q+V+ WL GF
Sbjct: 602 GVLDKKSLGSSHGSLIHIIVNEKGVNEGKKFLGQCQRVINHWLINRGF------SIGIGD 655
Query: 213 XCARENMMEEISYGLQEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHI 272
A + ME+I +++AE+ +L+V D G L+ ++ +I ++E +
Sbjct: 656 TIADKATMEQIEETIRKAEKDV---KLIVK---DAQEGKLR-AEAGRTIQQ---SFENQV 705
Query: 273 SAALSEVSVDAFRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHS 332
+ L++ DA ++++ N +M AGSKG+ + + Q C+G Q+
Sbjct: 706 NKVLNKAREDAGNKAKKSLKD--------DNNIKSMVTAGSKGSYINISQIIACVGQQNV 757
Query: 333 LVRLSYRMPRELSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFA 392
+ R+P ++P F+ + V +S+L GL P E F
Sbjct: 758 EGK---RIPYGFRN---------RTLPHFAQDDHGPES---RGFVANSYLRGLTPQEFFF 802
Query: 393 HSVANRDSSFSDNADL--PGTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
H++ R+ G + RRL+ M D+ YDGTVR+ GN ++QF Y D
Sbjct: 803 HTMGGREGLIDTAVKTSETGYIQRRLIKAMEDIMVKYDGTVRDAQGN-VVQFLYGED 858
>F4FXU7_METCR (tr|F4FXU7) DNA-directed RNA polymerase OS=Metallosphaera cuprina
(strain Ar-4) GN=Mcup_0034 PE=3 SV=1
Length = 886
Score = 128 bits (321), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 130/473 (27%), Positives = 209/473 (44%), Gaps = 75/473 (15%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M+ VRVLP +N L C P DFDGD ++ ++PQS A E EL+ + R ++
Sbjct: 436 MMGHRVRVLP-GRTFRLNLLVCPPYNADFDGDEMNLHVPQSEEAIAETKELMTVHRNILT 494
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCD--KKLTPPPSIIKAPSRNN 118
+ G ++ +QD ++ AY+L LL+ E+Q + + D K L P I AP R
Sbjct: 495 PRYGGPIIGSAQDYISGAYLLTVKTTLLSEDEVQTILGVADINKDLGEP--AILAPKR-- 550
Query: 119 SLWSGKQLFSMLLPSNFDYSFPPN---GVSVSDGE---------------LTSSFESSGW 160
L++GKQ+ S LP F++ P N GV E L F+
Sbjct: 551 -LYTGKQIVSHFLPEEFNFHGPANISSGVRSCKDEDCPHDSYVVIKRGKLLEGVFDKKAL 609
Query: 161 LRDSECNIFQRLVERF-QDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENM 219
+I LV + +D L L+ + KV ++ + G E+
Sbjct: 610 GNQQAESILHWLVREYDEDYVLWLMDNLFKVFLRYIELHGLTMTLSDVTIP------EDA 663
Query: 220 MEEISYGLQEA-EQACDFNQLLVDHYCDFLSG-SLQDSDNVASIDMDSLNYEKHISAALS 277
++IS +EA E+ D + + G +L++S + S +D+L+ ++ + ++
Sbjct: 664 TKKISEKAREARERVNDLIARYKKGELEVIPGRTLEES--LESYILDTLDKLRNEAGEIA 721
Query: 278 EVSVDAFRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLS 337
+ +D F NA++ M + G++G++L + Q + LG Q VR
Sbjct: 722 TMHLDPF-----------------NNAYI-MARTGARGSVLNITQMAAMLGQQS--VR-G 760
Query: 338 YRMPRELSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVAN 397
R+ R S ++P F S + + SSF +GLNP+E F H+
Sbjct: 761 ERIKRGYST---------RTLPHFKPNDISPEA---RGFIYSSFRSGLNPIETFFHAAGG 808
Query: 398 RDSSFSDNA---DLPGTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
R+ D A G + RRL+ + DL YDGTVR LYG ++IQ Y D
Sbjct: 809 REG-LVDTAVRTSQSGYMQRRLINALSDLRIEYDGTVRTLYG-EVIQTLYGGD 859
>A7J592_9LECA (tr|A7J592) DNA-directed RNA polymerase (Fragment) OS=Pyxine
subcinerea GN=RPB1 PE=3 SV=1
Length = 1015
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 121/462 (26%), Positives = 203/462 (43%), Gaps = 61/462 (13%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M+ VRV+P S+ +N SP DFDGD ++ ++PQS R E+N+L + +++
Sbjct: 389 MMGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVNQLCMVPLNIVS 447
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCD--KKLTPPPSIIKAPSRNN 118
Q L+ + QD+L Y + V LN ++ + + + P P+I+K PS
Sbjct: 448 PQRNGPLMGIVQDTLCGIYKICRRDVFLNQDQVMNILLWVPDWDGIIPQPAILK-PS--- 503
Query: 119 SLWSGKQLFSMLLPSNF------DYSFPP---NGVSVSDGELTSSFESSGWLRDSECNIF 169
+W+GKQ+ S+++P D F P +G+ +S+GEL S + S I
Sbjct: 504 PMWTGKQIISLVIPPGLNLGRSGDDGFSPIDDSGLLISNGELMYGLLSKKIVGASSAGII 563
Query: 170 QRLV-ERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMME-EISYGL 227
+ E+ + + AQ V+ WL GF RE + E +
Sbjct: 564 HIVYNEKGPEAAMAFFNGAQTVVNYWLLHNGFSIGIGDTIPD-----RETIKHIEDAVNK 618
Query: 228 QEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHM 287
Q+AE + + + D L G NV +E +S AL++ DA
Sbjct: 619 QKAE-VLEITKSATESVLDTLPGM-----NVRE------TFESRVSKALNKARDDAGTET 666
Query: 288 FRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCA 347
++++ L N + M ++GSKG+ + + Q + +G Q + R+P
Sbjct: 667 EKSLKDL--------NNAIQMARSGSKGSTIDISQMTAVVGQQSVEGK---RIPFGFK-- 713
Query: 348 AWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNAD 407
++P F+ S + VE+S+L GL P E F H++A R+
Sbjct: 714 -------YRTLPHFTKDDYSPES---RGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVK 763
Query: 408 LP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + D+ YDGT+RN G+ ++QF Y D
Sbjct: 764 TAETGYIQRRLVKALEDVMAKYDGTIRNSLGD-IVQFLYGED 804
>A7J5B1_9LECA (tr|A7J5B1) DNA-directed RNA polymerase (Fragment) OS=Teloschistes
exilis GN=RPB1 PE=3 SV=1
Length = 1003
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 118/459 (25%), Positives = 202/459 (44%), Gaps = 57/459 (12%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M+ VRV+P S+ +N SP DFDGD ++ ++PQS R E+N+L + +++
Sbjct: 379 MMGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVNQLCMVPLNIVS 437
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCDK--KLTPPPSIIKAPSRNN 118
Q L+ + QD+L Y + V LN ++ + + + + P P+++K
Sbjct: 438 PQRNSPLMGIVQDTLCGIYKICRRDVFLNQEQVMNILLWVPEWDGIIPQPAVLKP----T 493
Query: 119 SLWSGKQLFSMLLPSNF------DYS-FPPNGVSVSDGELTSSFESSGWLRDSECNIFQR 171
LW+GKQ+ S+++P+ DY+ +G+ VS GEL + + + I
Sbjct: 494 PLWTGKQIVSLVIPAGLNLVKGSDYAPLKDDGIFVSSGELMFGLLNKKVVGAAMGGIIHI 553
Query: 172 LV-ERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGLQEA 230
+ E+ + +N AQ V+ WL GF ++EE + Q+
Sbjct: 554 VYNEKGPEAAMNFFNGAQAVVNYWLLHNGFSIGIGDTIPDRETI---RLIEE-AVNAQKR 609
Query: 231 EQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHMFRN 290
E A + Q+ + D L G NV +E +S AL++ DA +
Sbjct: 610 EVA-EITQMATESRLDTLPGM-----NVRE------TFESRVSKALNKARDDAGTVTEDS 657
Query: 291 IQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCAAWN 350
++ L N M ++GSKG+ + + Q + +G Q + R+P
Sbjct: 658 LKDL--------NNATQMARSGSKGSTINISQMTAVVGQQSVEGK---RIPFGFK----- 701
Query: 351 SEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNADLP- 409
++P F+ S + VE+S+L GL P E F H++A R+
Sbjct: 702 ----YRTLPHFTKDDYSPES---RGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAE 754
Query: 410 -GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + D+ YDGT+RN G+ ++QF Y D
Sbjct: 755 TGYIQRRLVKALEDVMAKYDGTIRNSLGD-IVQFVYGED 792
>A5H2F1_9LECA (tr|A5H2F1) DNA-directed RNA polymerase (Fragment) OS=Tornabea
scutellifera GN=RPB1 PE=3 SV=1
Length = 993
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 115/459 (25%), Positives = 199/459 (43%), Gaps = 57/459 (12%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M+ VRV+P S+ +N SP DFDGD ++ ++PQS R E+N+L + +++
Sbjct: 370 MMGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVNQLCMVPLNIVS 428
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCDK--KLTPPPSIIKAPSRNN 118
Q L+ + QD+L Y + V LN ++ + + + + P P+++K
Sbjct: 429 PQRNSPLMGIVQDTLCGIYKICRRDVFLNHEQVMNILLWVPEWDGIIPQPAVLKP----K 484
Query: 119 SLWSGKQLFSMLLPSNF------DYS-FPPNGVSVSDGELTSSFESSGWLRDSECNIFQR 171
LW+GKQ+ S+++PS DY+ G+ V+ GEL + + + I
Sbjct: 485 PLWTGKQIVSLVIPSGLNLVKGSDYAPLKDEGIFVAGGELMFGLLNKKVVGAAMGGIIHI 544
Query: 172 LV-ERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGLQEA 230
+ E+ + +N AQ V+ WL GF ++EE +
Sbjct: 545 VYNEKGSEAAMNFFNGAQAVVNYWLLHNGFSIGIGDTIPDRETI---RLIEEAVN--TQK 599
Query: 231 EQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHMFRN 290
++ + Q+ + D L G NV +E +S AL++ DA +
Sbjct: 600 QEVTEITQMATESRLDTLPGM-----NVRE------TFESRVSKALNKARDDAGTVTEDS 648
Query: 291 IQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCAAWN 350
++ L N M ++GSKG+ + + Q + +G Q + R+P
Sbjct: 649 LKDL--------NNATQMARSGSKGSTINISQMTAVVGQQSVEGK---RIPFGFK----- 692
Query: 351 SEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNADLP- 409
++P F+ S + VE+S+L GL P E F H++A R+
Sbjct: 693 ----YRTLPHFTKDDYSPES---RGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAE 745
Query: 410 -GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + D+ YDGT+RN G+ ++QF Y D
Sbjct: 746 TGYIQRRLVKALEDVMAKYDGTIRNSLGD-IVQFVYGED 783
>C4YN85_CANAW (tr|C4YN85) DNA-directed RNA polymerase OS=Candida albicans (strain
WO-1) GN=CAWG_02325 PE=3 SV=1
Length = 1742
Score = 127 bits (319), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 121/469 (25%), Positives = 207/469 (44%), Gaps = 74/469 (15%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M++ VRV+P S+ +N SP DFDGD ++ ++PQS R EL+++ A+ Q+++
Sbjct: 455 MMAHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSPETRSELSQICAVPLQIVS 513
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCD-----KKLTPPPSIIKAPS 115
QS + ++ + QD+L + + + E Q+ +C + PPP+++K
Sbjct: 514 PQSNKPVMGIVQDTLCGIRKMTLRDIFI---EYDQVMNMCYWIPNWDGVIPPPAVVKP-- 568
Query: 116 RNNSLWSGKQLFSMLLPSN-----FD-----YSFPPNGVSVSDGELTSSFESSGWLRDSE 165
LW+GKQL S+ +P FD S G+ + DGE+ + +
Sbjct: 569 --KQLWTGKQLLSLAIPKGIHLQRFDGGRDLLSPKDTGMLIVDGEIMFGVVDKKTVGATG 626
Query: 166 CNIFQRLVERFQDKTLNLLYDA-QKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEIS 224
+ ++ K L+ + QKV+ WL GF A M +++
Sbjct: 627 GGLIHTVMREKGPKVCAELFSSIQKVVNYWLLHNGF------SIGIGDTIADAQTMRDVN 680
Query: 225 YGLQEAEQACDFNQLLVDHYCDFLSG----SLQDSDNVASIDMDSLNYEKHISAALSEVS 280
+QEA+Q ++++D + L +L++S +E ++S L++
Sbjct: 681 KTIQEAKQKV--QEIIIDAQHNKLEPEPGMTLRES------------FEHNVSRVLNQAR 726
Query: 281 VDAFRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRM 340
A R +++ L N M +GSKG+ + + Q S C+G Q + R+
Sbjct: 727 DTAGRSAEMSLKDL--------NNVKQMVTSGSKGSFINISQMSACVGQQ---IVEGKRI 775
Query: 341 PRELSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDS 400
P G S+P F+ S + VE+S+L GL P E F H++A R+
Sbjct: 776 PFGF---------GDRSLPHFTKDDYSPES---KGFVENSYLRGLTPQEFFFHAMAGREG 823
Query: 401 SFSDNADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + D+ YDGT RN G+ +IQF Y D
Sbjct: 824 LIDTAVKTAETGYIPRRLVKALEDIMVHYDGTTRNSLGD-IIQFIYGED 871
>Q30BD8_CYAPA (tr|Q30BD8) DNA-directed RNA polymerase (Fragment) OS=Cyanophora
paradoxa GN=RPB1 PE=2 SV=1
Length = 1000
Score = 127 bits (319), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 123/473 (26%), Positives = 214/473 (45%), Gaps = 76/473 (16%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
+++ ++V+P S+ +N SP DFDGD ++ ++PQS R E +E++A+ RQ+++
Sbjct: 369 IMAHRIKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSFETRAEASEIIAVPRQIVS 427
Query: 61 GQSGRNLLSLSQDSLTAAYML------MEDGVLLNLYEIQQLQMLCDKKLTPPPSIIKAP 114
QS R ++ + QD+L A+ + +E V++N+ + L D +L P P+I+K+P
Sbjct: 428 PQSNRPVMGIVQDTLMASQKMTLRDTFIEKDVIMNI--VMHLDSF-DGRL-PIPAIVKSP 483
Query: 115 SRNNSLWSGKQLFSMLLPS----NFDYSFPPNG-----------VSVSDGELTSSFESSG 159
W+GKQLFS LP+ F +S P+G V + +GEL
Sbjct: 484 K--GPRWTGKQLFSTFLPNVNVVRF-HSTHPDGESTDISPGDTQVRIENGELLCGIVCKR 540
Query: 160 WLRDSECNIFQRLVERFQDKTLNLLYD-AQKVLCEWLSMTGFXXXXXXXXXXXXXCAREN 218
L S ++ ++ T + ++ QKV+ WL GF A +
Sbjct: 541 TLGTSAGSLIHVIMNEHGPDTARVFFNMTQKVINNWLINVGF------SVGIGDTIADDR 594
Query: 219 MMEEISYGLQEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSE 278
ME I+ L++A++ D + G ++ + I+ ++E ++ L++
Sbjct: 595 TMESINSTLKKAKEEVD------TVVIEAQQGKMELQPGRSFIE----SFESKVNRILNQ 644
Query: 279 VSVDAFRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSY 338
A + ++Q + N TM +GSKG+ + + Q C+G Q+ +
Sbjct: 645 ARDAAGKTAQGSLQ--------RSNNVKTMLTSGSKGSFINISQMFACVGQQNVEGK--- 693
Query: 339 RMPRELSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHA--VVESSFLTGLNPLECFAHSVA 396
R+P ++P F+ Y P + VE+S+L GL P E F H++
Sbjct: 694 RIPFGFRN---------RTLPHFTK-----DDYGPESRGFVENSYLRGLTPQEFFFHAMG 739
Query: 397 NRDSSFSDNADL--PGTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
R+ G + RRL+ M D+ YD T RN G ++IQF Y D
Sbjct: 740 GREGLIDTAVKTSETGYIQRRLIKAMEDVMVQYDNTTRNSMG-EIIQFLYGED 791
>I7B946_PICGM (tr|I7B946) DNA-directed RNA polymerase (Fragment) OS=Meyerozyma
guilliermondii PE=3 SV=1
Length = 872
Score = 127 bits (319), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 119/466 (25%), Positives = 205/466 (43%), Gaps = 68/466 (14%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M+ V+V+P S+ +N SP DFDGD ++ ++PQS R EL+E+ A+ Q+++
Sbjct: 268 MMCHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSPETRAELSEICAVPLQIVS 326
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEI-QQLQMLCD-KKLTPPPSIIKAPSRNN 118
QS + ++ + QD+L + + + ++ L + D + PPP++IK
Sbjct: 327 PQSNKPVMGIVQDTLCGVRKMTLRDIFIEYDQVMNMLYWIPDWDGVIPPPAVIKP----K 382
Query: 119 SLWSGKQLFSMLLPSNFD----------YSFPPNGVSVSDGELTSSFESSGWLRDSECNI 168
LW+GKQL SM +P S G+ + DGE+ + + +
Sbjct: 383 PLWTGKQLLSMAIPKGIHIQRLDGGTSMLSPKDTGILIVDGEIMFGVVDKKTVGATSGGL 442
Query: 169 FQRLVERFQDKTLNLLYDA-QKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGL 227
++ + L+ A QKV+ WL GF A + M+ ++ +
Sbjct: 443 IHTVMREKGPQVCAKLFSALQKVVNYWLLHNGF------SIGIGDTIADSDTMKTVTTTI 496
Query: 228 QEAEQACDFNQLLVDHYCDFLSG----SLQDSDNVASIDMDSLNYEKHISAALSEVSVDA 283
+EA+Q ++++D + L +L++S +E ++S L++ A
Sbjct: 497 EEAKQKV--QEIILDAQKNRLEPEPGMTLRES------------FEHNVSRVLNQARDTA 542
Query: 284 FRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRE 343
R N++ L N M +GSKG+ + + Q S C+G Q + R+P
Sbjct: 543 GRSAEMNLKDL--------NNVKQMVVSGSKGSFINISQMSACVGQQ---IVEGKRIPFG 591
Query: 344 LSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFS 403
+ S+P F+ S + VE+S+L GL P E F H++A R+
Sbjct: 592 FAD---------RSLPHFTKDDYSPES---KGFVENSYLRGLTPQEFFFHAMAGREGLID 639
Query: 404 DNADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + D+ YDGT RN G+ +IQF Y D
Sbjct: 640 TAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGD-IIQFVYGED 684
>I7AAY5_9ASCO (tr|I7AAY5) DNA-directed RNA polymerase (Fragment) OS=Spathaspora
passalidarum PE=3 SV=1
Length = 872
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 125/470 (26%), Positives = 207/470 (44%), Gaps = 76/470 (16%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M+ V+V+P S+ +N SP DFDGD ++ ++PQS R EL+++ A+ Q+I+
Sbjct: 268 MMCHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSPETRAELSQICAVPLQIIS 326
Query: 61 GQSGRNLLSLSQDSLTAAY-MLMEDGVLLNLYEIQQLQMLCD-----KKLTPPPSIIKAP 114
QS + ++ + QD+L M + D + E Q+ +C + PPP+I+K
Sbjct: 327 PQSNKPVMGIVQDTLCGIRKMTLRDTYI----EFDQVMNMCYWIPNWDGVIPPPAIVKP- 381
Query: 115 SRNNSLWSGKQLFSMLLPSN-----FD-----YSFPPNGVSVSDGELTSSFESSGWLRDS 164
LW+GKQL SM +P FD S G+ + DGE+ + +
Sbjct: 382 ---KPLWTGKQLLSMAIPKGIHLQRFDGGRDLLSAKDTGMLIVDGEIMFGVVDKKTVGAT 438
Query: 165 ECNIFQRLV-ERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEI 223
+ ++ E+ L QKV+ WL GF A + M++I
Sbjct: 439 GGGLIHTVMREKGPQVCAQLFSSIQKVVNYWLLHNGF------SIGIGDTIADASTMKDI 492
Query: 224 SYGLQEAEQACDFNQLLVDHYCDFLSG----SLQDSDNVASIDMDSLNYEKHISAALSEV 279
+ +QEA+ ++++D + L +L++S +E ++S L++
Sbjct: 493 TTTIQEAKTKV--QEIILDAQQNRLEPEPGMTLRES------------FEHNVSRVLNQA 538
Query: 280 SVDAFRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYR 339
A R N++ L N M +GSKG+ + + Q S C+G Q + R
Sbjct: 539 RDTAGRSAEMNLKDL--------NNVKQMVTSGSKGSFINISQMSACVGQQ---IVEGKR 587
Query: 340 MPRELSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRD 399
+P + S+P F+ S + VE+S+L GL P E F H++A R+
Sbjct: 588 IPFGFAD---------RSLPHFTKDDYSPES---KGFVENSYLRGLTPQEFFFHAMAGRE 635
Query: 400 SSFSDNADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + D+ YDGT RN G+ +IQF Y D
Sbjct: 636 GLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGD-IIQFIYGED 684
>Q5ACI7_CANAL (tr|Q5ACI7) DNA-directed RNA polymerase OS=Candida albicans (strain
SC5314 / ATCC MYA-2876) GN=RPO21 PE=3 SV=1
Length = 1728
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 121/469 (25%), Positives = 207/469 (44%), Gaps = 74/469 (15%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M++ VRV+P S+ +N SP DFDGD ++ ++PQS R EL+++ A+ Q+++
Sbjct: 455 MMAHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSPETRSELSQICAVPLQIVS 513
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCD-----KKLTPPPSIIKAPS 115
QS + ++ + QD+L + + + E Q+ +C + PPP+++K
Sbjct: 514 PQSNKPVMGIVQDTLCGIRKMTLRDIFI---EYDQVMNMCYWIPNWDGVIPPPAVVKP-- 568
Query: 116 RNNSLWSGKQLFSMLLPSN-----FD-----YSFPPNGVSVSDGELTSSFESSGWLRDSE 165
LW+GKQL S+ +P FD S G+ + DGE+ + +
Sbjct: 569 --KQLWTGKQLLSLAIPKGIHLQRFDGGRDLLSPKDTGMLIVDGEIMFGVVDKKTVGATG 626
Query: 166 CNIFQRLVERFQDKTLNLLYDA-QKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEIS 224
+ ++ K L+ + QKV+ WL GF A M +++
Sbjct: 627 GGLIHTVMREKGPKVCAELFSSIQKVVNYWLLHNGF------SIGIGDTIADAQTMRDVN 680
Query: 225 YGLQEAEQACDFNQLLVDHYCDFLSG----SLQDSDNVASIDMDSLNYEKHISAALSEVS 280
+QEA+Q ++++D + L +L++S +E ++S L++
Sbjct: 681 KTIQEAKQKV--QEIIIDAQHNKLEPEPGMTLRES------------FEHNVSRVLNQAR 726
Query: 281 VDAFRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRM 340
A R +++ L N M +GSKG+ + + Q S C+G Q + R+
Sbjct: 727 DTAGRSAEMSLKDL--------NNVKQMVTSGSKGSFINISQMSACVGQQ---IVEGKRI 775
Query: 341 PRELSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDS 400
P G S+P F+ S + VE+S+L GL P E F H++A R+
Sbjct: 776 PFGF---------GDRSLPHFTKDDYSPES---KGFVENSYLRGLTPQEFFFHAMAGREG 823
Query: 401 SFSDNADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + D+ YDGT RN G+ +IQF Y D
Sbjct: 824 LIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGD-IIQFIYGED 871
>Q6FQS9_CANGA (tr|Q6FQS9) DNA-directed RNA polymerase OS=Candida glabrata (strain
ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=CAGL0I03828g PE=3 SV=1
Length = 1715
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 157/569 (27%), Positives = 238/569 (41%), Gaps = 96/569 (16%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M++ V+V+P S+ +N SP DFDGD ++ ++PQS R EL++L A+ Q+++
Sbjct: 455 MMAHRVKVVPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVS 513
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEI-QQLQMLCD-KKLTPPPSIIKAPSRNN 118
QS + + + QD+L L L ++ L + D + P P+IIK
Sbjct: 514 PQSNKPCMGIVQDTLCGIRKLTLRDTFLEFDQVLNMLYWVPDWDGVIPTPAIIKP----K 569
Query: 119 SLWSGKQLFSMLLPSN-----FD-----YSFPPNGVSVSDGELTSSFESSGWLRDSECNI 168
LWSGKQ+ S+ +P FD S NG+ V DGE+ + S +
Sbjct: 570 PLWSGKQILSVAIPKGIHLQRFDEGTTLLSPKDNGMLVIDGEIIFGVVDKKTVGSSSGGL 629
Query: 169 FQRLVERFQDKTL--NLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYG 226
+V R + T+ L + QKV+ WL GF A M EIS
Sbjct: 630 IH-VVTREKGPTICARLFGNIQKVVNFWLLHNGFSTGIGDT------VADGQTMREISET 682
Query: 227 LQEAEQACDFNQLLVDHYCDFLSG----SLQDSDNVASIDMDSLNYEKHISAALSEVSVD 282
+ EA+Q + + + + L+ +L++S +E ++ L+E
Sbjct: 683 IAEAKQKVE--AVTKEAQANLLTAKHGMTLRES------------FEDNVVRFLNEARDR 728
Query: 283 AFRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPR 342
A R N++ L N M AGSKG+ + + Q S C+G Q
Sbjct: 729 AGRLAEMNLKDL--------NNVKQMVSAGSKGSFINIAQMSACVGQQ------------ 768
Query: 343 ELSCAAWNSEKGL--NSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDS 400
S G ++P FS S + VE+S+L GL P E F H++ R+
Sbjct: 769 --SVEGKRIGFGFVDRTLPHFSKDDYSPES---KGFVENSYLRGLTPQEFFFHAMGGREG 823
Query: 401 SFSDNADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTDKDSSCDSGFQE 458
G + RRL+ + D+ YDGT RN GN +IQF Y D D+G E
Sbjct: 824 LIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGN-VIQFIYGED---GMDAGHIE 879
Query: 459 GTVGGEPVGALSACAISEAAYSALGQPISLLETSPLLNLKNVLECGSRKKSGDQTVSLFL 518
+L S+ A+ + I LL TS L ++LE GS + GD V + L
Sbjct: 880 KQ-------SLDTMGGSDQAFERRYR-IDLLNTSNSLE-PSLLESGS-EIIGDLKVQMAL 929
Query: 519 SDKLGKQRYGFEYAALEVKNYLERVMFSD 547
+ EY L R +FSD
Sbjct: 930 DE---------EYKQLVKDRRFLRTIFSD 949
>A5H2E9_9LECA (tr|A5H2E9) DNA-directed RNA polymerase (Fragment) OS=Buellia
dialyta GN=RPB1 PE=3 SV=1
Length = 994
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 113/459 (24%), Positives = 197/459 (42%), Gaps = 63/459 (13%)
Query: 6 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 65
VRV+P S+ +N SP DFDGD ++ ++PQS R E+N+L + +++ Q
Sbjct: 385 VRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVNQLCMVPLNIVSPQRNG 443
Query: 66 NLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCD--KKLTPPPSIIKAPSRNNSLWSG 123
L+ + QD+L Y + V LN Y++ + + + P P+I+K +W+G
Sbjct: 444 PLMGIVQDTLCGIYKICRRDVFLNQYQVMNILLWVPDWDGIIPQPAILKP----TPMWTG 499
Query: 124 KQLFSMLLPSNFDYSFP-----------PNGVSVSDGELTSSFESSGWLRDSECNIFQRL 172
KQ+ S+++P+ + P G+ +S+GEL + + S I +
Sbjct: 500 KQIVSLIIPAGLNLVRPGEKENPFSPSDDGGLYISNGELMYGLLAKKIVGASSGGIIHIV 559
Query: 173 V-ERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCAR-ENMMEEISYGLQEA 230
E+ + +N AQ V+ WL GF R E+ + Q+
Sbjct: 560 FNEKGPEAAMNFFNGAQTVVNYWLLHNGFSIGIGDTIPDRDTIKRIEDAVN------QQK 613
Query: 231 EQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHMFRN 290
+ + + D L G NV +E +S AL++ DA ++
Sbjct: 614 ADVTEITKEATESVLDTLPGM-----NVRE------TFESKVSKALNKARDDAGTATEQS 662
Query: 291 IQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCAAWN 350
++ + N + M ++GSKG+ + + + + +G Q + R+P
Sbjct: 663 LKDI--------NNAIQMARSGSKGSTINISRMTAVVGQQSVEGK---RIPFGFK----- 706
Query: 351 SEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNADLP- 409
++P F+ S + VE+S+L GL P E F H++A R+
Sbjct: 707 ----YRTLPHFTKDDYSPES---RGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAE 759
Query: 410 -GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + D+ YDGTVRN G+ ++QF Y D
Sbjct: 760 TGYIQRRLVKALEDVMAKYDGTVRNSLGD-IVQFIYGED 797
>F8QSY1_TRIFO (tr|F8QSY1) DNA-directed RNA polymerase (Fragment)
OS=Tritrichomonas foetus GN=Rpb1 PE=3 SV=1
Length = 1293
Score = 127 bits (318), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 126/463 (27%), Positives = 203/463 (43%), Gaps = 69/463 (14%)
Query: 8 VLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNL 67
+LP S +N +P DFDGD ++ ++PQ+ +AR E+ ++ + Q+I Q + +
Sbjct: 399 ILP-GSTFRLNLCVTTPYNADFDGDEMNLHVPQTQSARAEVKHIMLVPNQIITPQGNKPI 457
Query: 68 LSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCDKK---LTPPPSIIKAPSRNNSLWSGK 124
+ L QDSL A +L LN E+ L M K + PPP II P LWSGK
Sbjct: 458 IGLVQDSLLACRLLSLKSSFLNRNEMMNLMMWVRSKQNLVLPPPCIIH-PGNKVFLWSGK 516
Query: 125 QLFSMLLPS-NFDY---------SFPP---NGVSVSDGELTSSFESSGWLRDSECNIFQR 171
Q+FS+ LPS N D+ S+ P + + DG+L + + SE ++
Sbjct: 517 QVFSLFLPSINHDFVQKGAKEPGSWIPVDDTRIIIRDGQLLAGILDKDTVAKSEKSLAHV 576
Query: 172 LVERFQDKTL--NLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGLQE 229
++ + DK L + L + Q V+ WL GF A + E + +++
Sbjct: 577 VINSW-DKNLARDFLSETQMVVNSWLESRGF------SIGLIDAVATDKTNETVDQQIRD 629
Query: 230 AEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHMFR 289
E D +++ G L + I+ ++E+ ++ L++ ++DA
Sbjct: 630 LE--SDVKEII----SRTQKGQLTIQPGMTLIE----SFEREVNTKLNK-AIDA------ 672
Query: 290 NIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQH---SLVRLSYRMPRELSC 346
S V K + N+ + M KAGSKG+LL + Q +G Q+ +R ++
Sbjct: 673 -CGSTVQKSSRFWNSLVQMVKAGSKGSLLNISQIIATVGQQNIEGKRIRFGFKN------ 725
Query: 347 AAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNA 406
++P F+ ++ FL GLNP E F H++A R+
Sbjct: 726 ---------RTLPHFTKDDFGLES---RGFCRHCFLEGLNPPEFFFHAMAGREGIIDTAC 773
Query: 407 DL--PGTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL M YDGTVRN N++IQF Y D
Sbjct: 774 KTSDTGYIQRRLCKSMESHCVMYDGTVRNSL-NEVIQFIYGGD 815
>I7A098_PICET (tr|I7A098) DNA-directed RNA polymerase (Fragment) OS=Pichia
etchellsii PE=3 SV=1
Length = 872
Score = 126 bits (317), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 122/462 (26%), Positives = 205/462 (44%), Gaps = 60/462 (12%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M++ V+V+P S+ +N SP DFDGD ++ ++PQS R EL+E+ A+ Q+++
Sbjct: 268 MMAHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSHETRAELSEICAVPLQIVS 326
Query: 61 GQSGRNLLSLSQDSLTAAY-MLMEDGVLLNLYEIQQLQMLCD-KKLTPPPSIIKAPSRNN 118
QS + ++ + QD+L M + D + + L + + + PPP+++ R
Sbjct: 327 PQSNKPVMGIVQDTLCGVRKMTLRDSFIEYDQVMNMLYWIPNWNGIIPPPAVV----RPK 382
Query: 119 SLWSGKQLFSMLLPSN-----FD-----YSFPPNGVSVSDGELTSSFESSGWLRDSECNI 168
LW+GKQ+ SM +P FD S NG+ + DGE+ + + +
Sbjct: 383 PLWTGKQILSMAIPKGIHLQRFDDGTNLLSPKDNGMLIVDGEIMFGVVDKKTVGATGGGL 442
Query: 169 FQRLV-ERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGL 227
++ E+ L QKV+ WL GF A M++I+ +
Sbjct: 443 IHTVMREKGPQVCAQLFSSIQKVVNFWLLHNGF------SIGIGDTIADPETMKDITITI 496
Query: 228 QEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHM 287
QEA+ Q+++D L D + + ++E ++S L++ A R
Sbjct: 497 QEAKDKV--QQIILD-------AQLNKLDPEPGMTLRE-SFEHNVSRVLNQARDTAGRSA 546
Query: 288 FRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCA 347
+++ L N M +GSKG+ + + Q S C+G Q + R+P S
Sbjct: 547 EMSLKDL--------NNVKQMVVSGSKGSFINISQMSACVGQQ---IVEGKRIPFGFSD- 594
Query: 348 AWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNAD 407
S+P F+ S + VE+S+L GL P E F H++A R+
Sbjct: 595 --------RSLPHFTKDDYSPES---KGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVK 643
Query: 408 LP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + D+ YDGT RN G+ +IQF Y D
Sbjct: 644 TAETGYIQRRLVKALEDIMVHYDGTTRNSLGD-IIQFVYGED 684
>I7AAY0_9ASCO (tr|I7AAY0) DNA-directed RNA polymerase (Fragment) OS=Metschnikowia
bicuspidata PE=3 SV=1
Length = 872
Score = 126 bits (317), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 121/466 (25%), Positives = 207/466 (44%), Gaps = 68/466 (14%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M++ V+V+P S+ +N SP DFDGD ++ ++PQS R E++++ A+ Q+++
Sbjct: 268 MMAHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSPETRAEMSQICAVPLQIVS 326
Query: 61 GQSGRNLLSLSQDSLTAAY-MLMEDGVLLNLYEIQQLQMLCD-KKLTPPPSIIKAPSRNN 118
QS + ++ + QD+L M + D + + L + + + PPP++ K
Sbjct: 327 PQSNKPVMGIVQDTLCGIRKMTLRDSFIEYEQVMNMLYWIPNWDGVIPPPAVFKP----K 382
Query: 119 SLWSGKQLFSMLLPSNF---------DYSFPPN-GVSVSDGELTSSFESSGWLRDSECNI 168
LWSGKQL SM +P D P + G+ V DGE+ + + +
Sbjct: 383 PLWSGKQLLSMAIPKGIHLQRFDDGRDMLSPKDLGMLVVDGEIIFGVVDKKTVGATGGGL 442
Query: 169 FQRLV-ERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGL 227
++ E+ L QKV+ WL GF A ++ M +++ +
Sbjct: 443 IHTVMREKGPQVCAQLFSSIQKVVNYWLLHNGF------SIGIGDTIADKDTMRDVTTTI 496
Query: 228 QEAEQACDFNQLLVDHYCDFLSG----SLQDSDNVASIDMDSLNYEKHISAALSEVSVDA 283
QEA+Q ++++D + L +L++S +E ++S L++ A
Sbjct: 497 QEAKQKV--QEIIMDAQQNKLEPEPGMTLRES------------FEHNVSRILNQARDTA 542
Query: 284 FRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRE 343
R N++ L N M +GSKG+ + + Q S C+G Q + R+P
Sbjct: 543 GRSAEMNLKDL--------NNVKQMVTSGSKGSFINISQMSACVGQQ---IVEGKRIPFG 591
Query: 344 LSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFS 403
G ++P F+ S + VE+S+L GL P E F H++A R+
Sbjct: 592 F---------GDRTLPHFTKDDYSPES---KGFVENSYLRGLTPQEFFFHAMAGREGLID 639
Query: 404 DNADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + D+ YDGT RN G+ +IQF Y D
Sbjct: 640 TAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGD-IIQFVYGED 684
>G1XDW8_ARTOA (tr|G1XDW8) DNA-directed RNA polymerase OS=Arthrobotrys oligospora
(strain ATCC 24927 / CBS 115.81 / DSM 1491)
GN=AOL_s00080g3 PE=3 SV=1
Length = 1760
Score = 126 bits (317), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 119/465 (25%), Positives = 198/465 (42%), Gaps = 67/465 (14%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M+ VRVLP S+ +N SP DFDGD ++ ++PQS R E+++L + Q+++
Sbjct: 489 MMGHRVRVLPYSTF-RLNLSVTSPYNADFDGDEMNMHVPQSEETRAEVSQLCMVPLQIVS 547
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCDK--KLTPPPSIIKAPSRNN 118
Q L+ + QD+L Y L V L+ ++ + + + PPP+I+K R
Sbjct: 548 PQRNGPLMGIVQDTLCGVYKLCRRDVFLDRDQLMNVLLWVPEWDGTFPPPAIVKPSPR-- 605
Query: 119 SLWSGKQLFSMLLPSNFDYSFP---------PNGVSVSDGELTSSFESSGWLRDSECNIF 169
W+GKQL SM++P + P G+ V+DGEL S + S+ +
Sbjct: 606 --WTGKQLISMVIPKGINLVKPDKEGMSPLADTGLCVTDGELMFGLFSKKSVGASQGGMI 663
Query: 170 QRLV-ERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGLQ 228
+ E+ + Q+V+ WL GF I +
Sbjct: 664 HTIYNEKGWQTCMGFFNGTQRVVNYWLLHNGFSIG-------------------IGDTIP 704
Query: 229 EAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLN----YEKHISAALSEVSVDAF 284
+A ++ + + Q DNV + +N +E +S +L+ DA
Sbjct: 705 DAATIQKIQDIVTQRKAEVDEVTKQAQDNVLEA-LPGMNIRETFENKVSRSLNLARDDAG 763
Query: 285 RHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPREL 344
++++ L N + M ++GSKG+ + + Q S +G Q + R+P
Sbjct: 764 SATEKSLKDL--------NNAIQMARSGSKGSNINISQMSAVVGQQSVEGK---RIPFGF 812
Query: 345 SCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSD 404
++P F+ S + VE+S+L GL P E F H++A R+
Sbjct: 813 K---------YRTLPHFTKDDYSPES---RGFVENSYLRGLTPQEFFFHAMAGREGLIDT 860
Query: 405 NADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + D+ YDGTVRN G+ +IQF Y D
Sbjct: 861 AVKTAETGYIQRRLVKALEDVMCKYDGTVRNSLGD-IIQFCYGED 904
>G8JWY7_ERECY (tr|G8JWY7) DNA-directed RNA polymerase OS=Eremothecium cymbalariae
(strain CBS 270.75 / DBVPG 7215 / KCTC 17166 / NRRL
Y-17582) GN=Ecym_8065 PE=3 SV=1
Length = 1743
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 127/470 (27%), Positives = 200/470 (42%), Gaps = 76/470 (16%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M++ V+V+P S+ +N SP DFDGD ++ ++PQS R EL++L A+ +Q+++
Sbjct: 455 MMAHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPQQIVS 513
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEI-QQLQMLCD-KKLTPPPSIIKAPSRNN 118
QS + + + QD+L + + L ++ L + D + P P+I+K
Sbjct: 514 PQSNKPCMGIVQDTLCGIRKMTLRDTFIELDQVLNMLYWIPDWDGVIPKPTILKP----K 569
Query: 119 SLWSGKQLFSMLLPSN-----FD----YSFPP-NGVSVSDGELTSSFESSGWLRDSECNI 168
LWSGKQL SM +P+ FD Y P NG+ + DG++ + S +
Sbjct: 570 PLWSGKQLLSMAIPNGIHLQRFDEGTTYLSPKDNGMLIIDGQIIFGVVDKKTVGSSSGGL 629
Query: 169 FQRLV-ERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGL 227
+ E+ L + QKV+ WL GF A E M EI+ +
Sbjct: 630 IHVVTREKGPQVCAKLFGNIQKVVNYWLLHNGFSIGIGDT------IADEKTMREITEAI 683
Query: 228 -------QEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVS 280
QE + N L H +L++S +E ++ L+E
Sbjct: 684 ALAKKRVQEVTKEAQANLLTAKHGM-----TLRES------------FEDNVVRFLNEAR 726
Query: 281 VDAFRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQH-SLVRLSYR 339
A R N++ L N M AGSKG+ + + Q S C+G Q R+++
Sbjct: 727 DKAGRSAELNLRDL--------NNVKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIAFG 778
Query: 340 MPRELSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRD 399
++P FS S + VE+S+L GL P E F H++ R+
Sbjct: 779 FADR-------------TLPHFSKDDYSPES---KGFVENSYLRGLTPQEFFFHAMGGRE 822
Query: 400 SSFSDNADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + D+ YDGT RN GN +IQF Y D
Sbjct: 823 GLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGN-IIQFVYGED 871
>M9N0J3_ASHGS (tr|M9N0J3) FADR086Cp OS=Ashbya gossypii FDAG1 GN=FAGOS_FADR086C
PE=4 SV=1
Length = 1738
Score = 126 bits (316), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 125/467 (26%), Positives = 204/467 (43%), Gaps = 70/467 (14%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M++ V+V+P S+ +N SP DFDGD ++ ++PQS R EL++L A+ Q+++
Sbjct: 455 MMAHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVS 513
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEI-QQLQMLCD-KKLTPPPSIIKAPSRNN 118
QS + + + QD+L + + L ++ L + D + P P+I+K
Sbjct: 514 PQSNKPCMGIVQDTLCGIRKMTLRDTFIELDQVLNMLYWIPDWDGVIPTPTILKP----K 569
Query: 119 SLWSGKQLFSMLLPSN-----FD----YSFPP-NGVSVSDGELTSSFESSGWLRDSECNI 168
LWSGKQL SM +PS FD Y P NG+ + DG++ + S +
Sbjct: 570 PLWSGKQLLSMAIPSGIHLQRFDEGTTYLSPKDNGMLIIDGQIIFGVVDKKTVGSSSGGL 629
Query: 169 FQRLV-ERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGL 227
+ E+ + L + QKV+ WL GF A E M EI+ +
Sbjct: 630 IHVVTREKGPEVCAKLFGNIQKVVNYWLLHNGFSIGIGDT------IADEKTMREITDAI 683
Query: 228 QEAEQACDFNQLLVDHYCDFLSG----SLQDSDNVASIDMDSLNYEKHISAALSEVSVDA 283
A++ + ++ + + L+ +L++S +E ++ L+E A
Sbjct: 684 ALAKKKVE--EVTKEAQANLLTAKHGMTLRES------------FEDNVVRYLNEARDKA 729
Query: 284 FRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQH-SLVRLSYRMPR 342
R N++ L N M AGSKG+ + + Q S C+G Q R+++
Sbjct: 730 GRSAEVNLKDL--------NNVKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIAFGFAD 781
Query: 343 ELSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSF 402
++P FS S + VE+S+L GL P E F H++ R+
Sbjct: 782 R-------------TLPHFSKDDYSPES---KGFVENSYLRGLTPQEFFFHAMGGREGLI 825
Query: 403 SDNADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + D+ YDGT RN GN +IQF Y D
Sbjct: 826 DTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGN-IIQFVYGED 871
>F3KKS8_9ARCH (tr|F3KKS8) DNA-directed RNA polymerase OS=Candidatus Nitrosoarchaeum
limnia SFB1 GN=Nlim_1102 PE=3 SV=1
Length = 1263
Score = 125 bits (315), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 203/918 (22%), Positives = 362/918 (39%), Gaps = 167/918 (18%)
Query: 6 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 65
VRVLP ++P C P DFDGD ++ ++PQS AR E L+ + QLI+ + G
Sbjct: 438 VRVLP-GKTFRLHPSVCPPYNADFDGDEMNLHVPQSEEARAEAILLMRVQDQLISPRYGG 496
Query: 66 NLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLC--DKKLTPPPSIIKAPSRNNSLWSG 123
++ +D +T AY+L +D LL E ML ++K P S +++ +++G
Sbjct: 497 PIIGALRDFVTGAYLLTKDDTLLTPQEFYNYAMLGGYNEKFPKPGS----KNKDGPMYTG 552
Query: 124 KQLFSMLLPSNFDYSF----------PPNGVSVSDGELTSS-FESSGWLRDSECNIFQRL 172
KQLFS+ LP +F+Y V + +GEL S + S + ++ R+
Sbjct: 553 KQLFSLFLPKDFNYVITSKWSKGTKGAQKDVVIKNGELISGVIDKSSIGAEEPESVLHRI 612
Query: 173 VERFQD-KTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGLQEAE 231
+ + + K N L ++ ++++ GF SYG + E
Sbjct: 613 AKDYGNTKAKNFLNSILIMVKQYITHYGF-----------------------SYGYADLE 649
Query: 232 QACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHI---------SAALSEVSVD 282
Q ++D +Q++ V S D+ S YEK AL V+
Sbjct: 650 VPEKEKQQILD--------DIQETYGVIS-DLTS-QYEKGTLKLTRGMKPEEALEAYIVN 699
Query: 283 AFRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPR 342
D+ + NA M G++G+ L + Q + LG Q R R+
Sbjct: 700 ELGKARDKAGMTADQSLDQSNAGRIMATTGARGSALNIGQMAGALGQQS---RRGSRL-- 754
Query: 343 ELSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSF 402
A +N+ ++P + + H V+S++ GL+ LE F H++ R+
Sbjct: 755 ---HAGYNN----RALPHYQEHDNNPDA---HGFVKSNYREGLSALEFFFHAMGGRE-GL 803
Query: 403 SDNA---DLPGTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTDKDSSCDSGFQEG 459
D A G + RRL+ + + YDGTVR+ +G+ +IQF Y D S E
Sbjct: 804 VDTAVRTQQSGYMQRRLINALEHIRLEYDGTVRDPHGH-IIQFLYGEDGIDVAKSDHGEA 862
Query: 460 ----------TV--GGEPVGALSACAISEAAYSALGQPISLLETSPLLNLKNVLECGS-- 505
T+ G+ +++ + L T LL+ K E
Sbjct: 863 FNINRLIESQTIVDSGKKATKEEITDLAKKYTKTFNPRLKQLVTDGLLDSKLSKEGAEIV 922
Query: 506 ----------RKKSGDQTVSLFLSDKLGKQRY-----GFEYAALEVKNYLERVMFSDIVS 550
K Q V + + +G+ F +A + +N + ++
Sbjct: 923 CKKGLSLYNKAKVEPGQAVGIITAQSIGEPGTQMTLRTFHFAGIAERNVT--LGLPRLIE 980
Query: 551 TVMIMFTPQSSSLEIFNPWVCHFHLDKEIVARRKLTVHSVIESLYRRYESLTKESKVTFP 610
V P + +++I+ LD E R+ + L + +L +S+ +
Sbjct: 981 LVDARKKPVTPTMDIY--------LDNESKKSREKAIDVARNILQTKVSALISDSETDYT 1032
Query: 611 N---LKISSN----RKCSKEGGYASLNKEKE-----DVDCISVTIVESSRSSAKLEAVRD 658
L +S N R C+ A+L K+ + I++ +VE S + + A+R+
Sbjct: 1033 TQIKLILSPNRLKERGCTVGEVEAALQSNKKFKMETTGELITLKLVEESDAPTVI-AIRN 1091
Query: 659 LMIPFLLGTVIKGFLEIKKVDILWSNRSKVSNSYAGSSGELYLRVTMSSDGDSGRFWGVL 718
+L T +KG +I++V ++ + V + GS+ L V SG
Sbjct: 1092 K----VLNTTVKGVPDIERVTLVQKDDEWVIQT-TGSNIAKVLEV-------SG------ 1133
Query: 719 INHCHRIMPMIDWTRSHPDNIHHFCSAYGIDAGRQYFLHSLASATTETGKSILPKHLHLV 778
ID +N+ GI+A R ++ L + + G + +++ LV
Sbjct: 1134 ----------IDKKNVRTNNVFEIAGTLGIEASRNALINELNNTLEDQGLEVDDRYIMLV 1183
Query: 779 ANSLSASGEFVGLNAKGIGRQRKHASVSSPFVQACFSNPGTSFIKAAKSGVLDDLQGCLD 838
++ + + G + IGR + S +A F + AA +G ++ L+G +
Sbjct: 1184 SDLMCSRGYM-----QQIGRHGIAGTKDSVLARAAFEITVPTIAHAALAGEVEQLKGITE 1238
Query: 839 ALAWGKCMSMGTSGQFDI 856
+ G + +G SG D+
Sbjct: 1239 NVIVGSIIPIG-SGTVDL 1255
>A7J586_9LECA (tr|A7J586) DNA-directed RNA polymerase (Fragment) OS=Lobariella
pallida GN=RPB1 PE=3 SV=1
Length = 996
Score = 125 bits (315), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 117/462 (25%), Positives = 198/462 (42%), Gaps = 61/462 (13%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M+ VRV+P S+ +N SP DFDGD ++ ++PQS R E+N+L + +++
Sbjct: 370 MMGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCMVPLNIVS 428
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCDK--KLTPPPSIIKAPSRNN 118
Q L+ + QD+L Y L V LN ++ + + + P P+I+K +
Sbjct: 429 PQRNGPLMGIVQDTLCGIYKLCRRDVFLNKEQVMNILLWVPDWDGVLPQPAILKPRPK-- 486
Query: 119 SLWSGKQLFSMLLPSNFDYS------FPP---NGVSVSDGELTSSFESSGWLRDSECNIF 169
W+GKQ+ S+++P + + F P +G+ VS GEL + + I
Sbjct: 487 --WTGKQIISLVIPPGLNLTRSSSEGFSPLNDDGLFVSGGELMYGLFDKKSVGATSGGII 544
Query: 170 QRLV-ERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGL- 227
+ E+ + +N AQ V+ WL GF N ++ I +
Sbjct: 545 HIIFNEKGPEAAMNFFNGAQTVVNYWLLHNGFSIGIGDT------IPDRNTIQRIENAVN 598
Query: 228 QEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHM 287
Q+ E + + ++ + L G NV +E +S AL++ DA
Sbjct: 599 QQKEDVAEITRSATENDLEPLPGM-----NVRE------TFESKVSKALNKARDDAGTVT 647
Query: 288 FRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCA 347
++ L N M ++GSKG+ + + Q + +G Q + R+P
Sbjct: 648 EEGLKDL--------NNATQMARSGSKGSTINISQMTAVVGQQSVEGK---RIPFGFK-- 694
Query: 348 AWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNAD 407
++P F+ S + VE+S+L GL P E F H++A R+
Sbjct: 695 -------YRTLPHFTKDDYSPES---RGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVK 744
Query: 408 LP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + D+ YDGTVRN G+ ++QF Y D
Sbjct: 745 TAETGYIQRRLVKALEDVMAKYDGTVRNSLGD-IVQFVYGED 785
>M4N8J2_9ASCO (tr|M4N8J2) RNA polymerase I (Fragment) OS=Ascoidea sp. CJR-2013
PE=4 SV=1
Length = 831
Score = 125 bits (315), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 119/466 (25%), Positives = 204/466 (43%), Gaps = 68/466 (14%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M+ +++P S+ IN SP DFDGD ++ ++PQS R EL LVA+ Q+++
Sbjct: 227 MMCHRAKIMPYSTF-RINLSVTSPYNADFDGDEMNLHVPQSAETRAELQNLVAVPLQIVS 285
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCD--KKLTPPPSIIKAPSRNN 118
QS + ++ + QD+L + + + ++ Q+ + PPP+I+K
Sbjct: 286 PQSNKPVMGIVQDTLCGIRKMTLRDIFIEYDQVMQICYWVKDWNGIMPPPAILKP----K 341
Query: 119 SLWSGKQLFSMLLPSN-----FDYS---FPPN--GVSVSDGELTSSFESSGWLRDSECNI 168
LW+GKQL S+ +P FD PN G+ + +GE+ + + + +
Sbjct: 342 PLWTGKQLLSLAIPEGIHLLRFDEKTTLLSPNDDGMLIINGEIMFGIVNKKTVGATNGGL 401
Query: 169 FQRLV-ERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGL 227
++ E+ +L + QK++ WL GF A + M++I+ +
Sbjct: 402 IHTVMREKGSKACADLFGNIQKIVNYWLLHNGF------SIGIGDTIADADTMKKITTTI 455
Query: 228 QEAEQACDFNQLLVDHYCDFL----SGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDA 283
EA+Q L++D + L +L++S +E +S L++ DA
Sbjct: 456 AEAKQKV--QDLILDAQANRLELEPGMTLRES------------FESKVSRVLNQARDDA 501
Query: 284 FRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRE 343
N++ L N M +GSKG+ + + Q S C+G Q + R+P
Sbjct: 502 GHCAQMNLKEL--------NNVKQMVVSGSKGSFINISQMSACVGQQ---IVEGKRIPFG 550
Query: 344 LSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFS 403
+ ++P F+ S + VE+S+L GL P E F H++A R+
Sbjct: 551 FAD---------RTLPHFTKDDFSPES---KGFVENSYLRGLTPQEFFFHAMAGREGLID 598
Query: 404 DNADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + D+ YDGT RN G +IQF Y D
Sbjct: 599 TAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSVG-AIIQFIYGED 643
>I7AAV0_9ASCO (tr|I7AAV0) DNA-directed RNA polymerase (Fragment) OS=Ascoidea
rubescens PE=3 SV=1
Length = 872
Score = 125 bits (314), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 119/466 (25%), Positives = 204/466 (43%), Gaps = 68/466 (14%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M+ +++P S+ IN SP DFDGD ++ ++PQS R EL LVA+ Q+++
Sbjct: 268 MMCHRAKIMPYSTF-RINLSVTSPYNADFDGDEMNLHVPQSAETRAELQNLVAVPLQIVS 326
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCD--KKLTPPPSIIKAPSRNN 118
QS + ++ + QD+L + + + ++ Q+ + PPP+I+K
Sbjct: 327 PQSNKPVMGIVQDTLCGIRKMTLRDIFIEYDQVMQICYWVKDWNGIMPPPAILKP----K 382
Query: 119 SLWSGKQLFSMLLPSN-----FDYS---FPPN--GVSVSDGELTSSFESSGWLRDSECNI 168
LW+GKQL S+ +P FD PN G+ + +GE+ + + + +
Sbjct: 383 PLWTGKQLLSLAIPEGIHLLRFDEKTTLLSPNDDGMLIINGEIMFGIVNKKTVGATNGGL 442
Query: 169 FQRLV-ERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGL 227
++ E+ +L + QK++ WL GF A + M++I+ +
Sbjct: 443 IHTVMREKGSKACADLFGNIQKIVNYWLLHNGF------SIGIGDTIADADTMKKITTTI 496
Query: 228 QEAEQACDFNQLLVDHYCDFL----SGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDA 283
EA+Q L++D + L +L++S +E +S L++ DA
Sbjct: 497 AEAKQKV--QDLILDAQANRLELEPGMTLRES------------FESKVSRVLNQARDDA 542
Query: 284 FRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRE 343
N++ L N M +GSKG+ + + Q S C+G Q + R+P
Sbjct: 543 GHCAQMNLKEL--------NNVKQMVVSGSKGSFINISQMSACVGQQ---IVEGKRIPFG 591
Query: 344 LSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFS 403
+ ++P F+ S + VE+S+L GL P E F H++A R+
Sbjct: 592 FAD---------RTLPHFTKDDFSPES---KGFVENSYLRGLTPQEFFFHAMAGREGLID 639
Query: 404 DNADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + D+ YDGT RN G +IQF Y D
Sbjct: 640 TAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSVG-AIIQFIYGED 684
>I7B547_9SACH (tr|I7B547) DNA-directed RNA polymerase (Fragment) OS=Eremothecium
cymbalariae PE=3 SV=1
Length = 871
Score = 125 bits (314), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 127/470 (27%), Positives = 200/470 (42%), Gaps = 76/470 (16%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M++ V+V+P S+ +N SP DFDGD ++ ++PQS R EL++L A+ +Q+++
Sbjct: 268 MMAHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPQQIVS 326
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEI-QQLQMLCD-KKLTPPPSIIKAPSRNN 118
QS + + + QD+L + + L ++ L + D + P P+I+K
Sbjct: 327 PQSNKPCMGIVQDTLCGIRKMTLRDTFIELDQVLNMLYWIPDWDGVIPKPTILKP----K 382
Query: 119 SLWSGKQLFSMLLPSN-----FD----YSFPP-NGVSVSDGELTSSFESSGWLRDSECNI 168
LWSGKQL SM +P+ FD Y P NG+ + DG++ + S +
Sbjct: 383 PLWSGKQLLSMAIPNGIHLQRFDEGTTYLSPKDNGMLIIDGQIIFGVVDKKTVGSSSGGL 442
Query: 169 FQRLV-ERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGL 227
+ E+ L + QKV+ WL GF A E M EI+ +
Sbjct: 443 IHVVTREKGPQVCAKLFGNIQKVVNYWLLHNGFSIGIGDT------IADEKTMREITEAI 496
Query: 228 -------QEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVS 280
QE + N L H +L++S +E ++ L+E
Sbjct: 497 ALAKKRVQEVTKEAQANLLTAKHGM-----TLRES------------FEDNVVRFLNEAR 539
Query: 281 VDAFRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQH-SLVRLSYR 339
A R N++ L N M AGSKG+ + + Q S C+G Q R+++
Sbjct: 540 DKAGRSAELNLRDL--------NNVKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIAFG 591
Query: 340 MPRELSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRD 399
++P FS S + VE+S+L GL P E F H++ R+
Sbjct: 592 FADR-------------TLPHFSKDDYSPES---KGFVENSYLRGLTPQEFFFHAMGGRE 635
Query: 400 SSFSDNADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + D+ YDGT RN GN +IQF Y D
Sbjct: 636 GLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGN-IIQFVYGED 684
>I7AB23_9ASCO (tr|I7AB23) DNA-directed RNA polymerase (Fragment) OS=Candida
blankii PE=3 SV=1
Length = 872
Score = 125 bits (314), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 119/462 (25%), Positives = 200/462 (43%), Gaps = 60/462 (12%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M++ V+V+P S+ +N SP DFDGD ++ ++PQS R EL+++ A+ Q+++
Sbjct: 268 MMAHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQIAAVPLQIVS 326
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCDK--KLTPPPSIIKAPSRNN 118
QS + ++ + QD+L L L ++ + + + P P+I+K
Sbjct: 327 PQSNKPVMGIVQDTLCGIRKLTRRDTFLEYDQVMNILFWVPQWNGIVPQPAILKP----K 382
Query: 119 SLWSGKQLFSMLLPSN-----FD-----YSFPPNGVSVSDGELTSSFESSGWLRDSECNI 168
LW+GKQ+ S+ +PS FD S NG+ ++ GE+ + + +
Sbjct: 383 PLWTGKQMVSLTIPSGIFLQRFDEGTTWLSPKDNGMLIAKGEIVYGAVDKATVGSTGGGL 442
Query: 169 FQRLV-ERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGL 227
++ E+ N QKV+ WL GF A M +I+ +
Sbjct: 443 IHTIMREKGPQVCCNFFGAVQKVVNFWLLHNGF------SIGIGDTIADSATMRDITNAI 496
Query: 228 QEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHM 287
EA+QA F+ + Q+ A+ +E+ + AL+E A +
Sbjct: 497 SEAKQAV----------AGFIEEAHQNKLKQAAGMTLRETFEQKVMVALNEARDQAGKS- 545
Query: 288 FRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCA 347
+ SL +K N M +GSKG+ + + Q S C+G Q V R+P +
Sbjct: 546 --SQVSLTEK-----NNVKQMVVSGSKGSFINISQMSACVGQQ---VVEGKRIPFGFAD- 594
Query: 348 AWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNAD 407
S+P F+ + +E+S+L GL P E F H++A R+
Sbjct: 595 --------RSLPHFTKDDFGPES---RGFIENSYLRGLTPQEFFFHAMAGREGLIDTAVK 643
Query: 408 LP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + D+ YDGT RN G+ +IQF Y D
Sbjct: 644 TAETGYIQRRLVKALEDIMVQYDGTTRNSLGD-IIQFLYGED 684
>G7E0H8_MIXOS (tr|G7E0H8) DNA-directed RNA polymerase OS=Mixia osmundae (strain
CBS 9802 / IAM 14324 / JCM 22182 / KY 12970) GN=Mo03004
PE=3 SV=1
Length = 2471
Score = 125 bits (314), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 118/464 (25%), Positives = 199/464 (42%), Gaps = 64/464 (13%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M++ V++LP S+ +N P DFDGD ++ ++PQS R EL ++ + RQ+++
Sbjct: 491 MMAHRVKLLPYSTF-RLNLSVTPPYNADFDGDEMNMHVPQSEETRAELQQIAWVPRQIVS 549
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCDK--KLTPPPSIIKAPSRNN 118
Q+ + ++ + QD+L ++ +Q + + + L PPP+I+K
Sbjct: 550 PQANKPVMGIVQDTLCGIRKFTLRDCFMDRDFVQNIMLWVPEWDGLLPPPAIVKP----K 605
Query: 119 SLWSGKQLFSMLLPSNFDY--------SFPPN--GVSVSDGELTSSF---ESSGWLRDSE 165
+W+GKQ+ SM +P + S P + GV V DGE+ ++ G R+S
Sbjct: 606 PMWTGKQILSMCIPRGVNLFIDNEAHSSLPDDDSGVLVDDGEIYYGVINKKTVGAQRESL 665
Query: 166 CNIFQRLVERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISY 225
++ R E+ + QKV+ WL GF A + M I+
Sbjct: 666 VDLIFR--EKGPEICRLFFTGVQKVVNFWLLHNGF------SIGIGDTVADRDTMRTIT- 716
Query: 226 GLQEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFR 285
D+ Q D F+S + QD +E ++ +L+ A +
Sbjct: 717 ---------DYIQTAKDEVAVFISKAQQDLIEPEPGMTIRETFESKVTGSLNRARDTAGQ 767
Query: 286 HMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELS 345
R++ + N M AGSKG+ + + Q S C+G Q + R+P
Sbjct: 768 SAERSL--------AASNNVKQMVVAGSKGSFINISQMSACVGQQ---IVEGKRIPFGFR 816
Query: 346 CAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDN 405
S+P F+ + + VE+S+L GL P E F H++A R+
Sbjct: 817 ---------YRSLPHFTKDDHTPEA---RGFVENSYLRGLTPQEFFFHAMAGREGLIDTA 864
Query: 406 ADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + D+ YDGTVRN G+ ++QF Y D
Sbjct: 865 VKTAETGYIQRRLVKALEDVMVNYDGTVRNSLGD-IVQFVYGED 907
>A1YIC6_NEOFR (tr|A1YIC6) DNA-directed RNA polymerase (Fragment)
OS=Neocallimastix frontalis GN=RPB1 PE=3 SV=1
Length = 1004
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 114/467 (24%), Positives = 197/467 (42%), Gaps = 66/467 (14%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M+ ++V+P S+ +N SP DFDGD ++ ++PQS + E+ E+ + +Q+++
Sbjct: 374 MMGHKIKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSYETKAEVQEICMVPKQIVS 432
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCD--KKLTPPPSIIKAPSRNN 118
Q+ + ++ + QD+L + L + + M + PPP I+K
Sbjct: 433 PQANKPVMGIVQDTLCGIRKFTKRDCFLTRDFVMNIIMWVPDWDGVVPPPCILKPI---- 488
Query: 119 SLWSGKQLFSMLLPS------------NFDYSFPP--NGVSVSDGELTSSFESSGWLRDS 164
LW+GKQ+ S+++P N D P V + +GEL + + S
Sbjct: 489 PLWTGKQIMSLIIPKINIVGYHSTHPDNEDTDISPGDTKVLIENGELLAGILCKKTVGSS 548
Query: 165 ECNIFQRLVERFQDKTLNLLYDA-QKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEI 223
+ I ++ + +T L ++ Q V+ WL GF A N ME I
Sbjct: 549 QNGIIHVVMNEYGPETAKLFFNGTQTVVNYWLLQNGF------SIGIGDTIADRNTMETI 602
Query: 224 SYGLQEAEQACDFNQLLVDHYCDF-LSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVD 282
+ + A+QA + +L C L + S+ LN + + A ++ S+
Sbjct: 603 NKAIASAKQAVN-EVILQAQQCKLECQPGLTIRETFESLVNRHLNKARDSAGASAQKSLR 661
Query: 283 AFRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPR 342
+ N M +GSKG+ + + Q + C+G Q+ + R+P
Sbjct: 662 EY------------------NNVKQMVVSGSKGSFINISQMTACVGQQNVEGK---RIPF 700
Query: 343 ELSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSF 402
++P F+ K Q VE+S+L GL P E F H++ R+
Sbjct: 701 GFK---------YRTLPHFT---KDDQSPESRGFVENSYLRGLTPQEFFFHAMGGREGLI 748
Query: 403 SDNADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + D+ YDGTVRN +G+ +IQF Y D
Sbjct: 749 DTAVKTAETGYIQRRLIKSLEDVSIKYDGTVRNSFGH-IIQFCYGED 794
>F8QSY8_9EUKA (tr|F8QSY8) DNA-directed RNA polymerase (Fragment) OS=Trichomonas
gallinae GN=Rpb1 PE=3 SV=1
Length = 1019
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 121/455 (26%), Positives = 195/455 (42%), Gaps = 76/455 (16%)
Query: 20 LC-CSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAA 78
LC +P DFDGD ++ ++PQS AAR E+ ++A+ +Q+I+ Q+ R ++ L QD+L
Sbjct: 405 LCDTTPYNADFDGDEMNLHVPQSQAARAEVRHIMAVPKQIISPQANRPVIGLVQDALLGC 464
Query: 79 YMLMEDGVLLNLYEIQQLQMLCDKK---LTPPPSIIKAPSRNNSLWSGKQLFSMLLPS-N 134
+L + L ++ L M + PPP I+K LWSGKQ+FS+ LP N
Sbjct: 465 RLLSKRDTFLTRNQVMNLMMWLPTNKDTILPPPCILKPV----QLWSGKQVFSLFLPKIN 520
Query: 135 FDYS------------FPPNG--VSVSDGELTSSFESSGWLRDSECNIFQRLVERFQ-DK 179
+D+ P N V + DG L + SE ++ ++ + D
Sbjct: 521 YDHFSNGARDDDKKSWMPANDTRVIIRDGHLLAGLLDKTSCARSEGSLTHVVINSYNTDI 580
Query: 180 TLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGLQEAEQACDFNQL 239
+ L Q ++ WL GF +++++++ + E E N
Sbjct: 581 AKDFLNQTQLIVNNWLEHRGF------SIGLIDCVVPQSVLDQVEEKINEVED----NVK 630
Query: 240 LVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHMFRNIQSLVDKYA 299
V SG L+ + I ++E +++AL++V DA++ L+ K
Sbjct: 631 GVIRTAQ--SGKLERRPGMTYIQ----SFEAEVNSALNQVLGDAYK--------LIQKDI 676
Query: 300 SKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCAAWNSEKGLNSMP 359
+ N+F+ M AGSKG + Q +G+ A N E
Sbjct: 677 RRDNSFIEMLTAGSKGANFNVTQ---VIGV----------------VAQQNIEGKRVKFG 717
Query: 360 MFSNTLKSIQCY----IPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNA---DLPGTL 412
TL Q + IP S++ GL P E H++ R + D A G +
Sbjct: 718 FNGRTLPHYQKHEYGLIPRGFCRHSYIEGLTPPEFLFHAMGGR-TGIIDTACKTSDTGYI 776
Query: 413 TRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
RRL+ M + AYDGTVRN N+++QF Y D
Sbjct: 777 QRRLVKSMESHHVAYDGTVRNSL-NEVVQFVYGGD 810
>Q5QHU1_AMAPH (tr|Q5QHU1) DNA-directed RNA polymerase (Fragment) OS=Amanita
phalloides PE=3 SV=1
Length = 1007
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 129/484 (26%), Positives = 206/484 (42%), Gaps = 85/484 (17%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M+S V+++P S+ +N P DFDGD ++ +IPQS R EL+++ + RQ+I+
Sbjct: 383 MMSHRVKLMPYSTF-RLNLSVTPPYNADFDGDEMNMHIPQSEETRAELSQIAWVPRQIIS 441
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCD--KKLTPPPSIIKAPSRNN 118
Q+ + ++ + QD+L L L+ ++Q + + P P+I+K
Sbjct: 442 PQANKPVMGIVQDTLCGIRKLTLRDTFLDWNQVQNILLWVPDWDGSVPIPAILKP----K 497
Query: 119 SLWSGKQLFSMLLPSNFDYSFPP----------NGVSVSDGELTSSFESSGWLRDSECNI 168
LWSGKQ+ SM +P + P +G+ + +GE+ + S+ +
Sbjct: 498 PLWSGKQILSMTIPRGINIHRSPDPKSSNPVFDDGMMIENGEIIFGIVEKKTVGASQGGL 557
Query: 169 FQRLV-ERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGL 227
+ E+ + T LL Q V+ WL GF S G+
Sbjct: 558 VHVVFREKGPEATRMLLTGIQMVVNYWLFHNGF-----------------------SIGI 594
Query: 228 QEAEQACDFNQLLVDHYCDFLSGSLQD-SDNVASIDMDSLNYEKHISAALSEVSVDAFRH 286
+ D + ++ S+QD NVA + D+++ H+ A ++F
Sbjct: 595 --GDTIVDLPTMA------YIRKSIQDRKSNVAKLIEDAIH--DHLKAKPGMTLRESFES 644
Query: 287 MFRNIQSLV----DKYAS----KGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSY 338
M +L KYA + N M AGSKG+ + + Q S+C+G Q R
Sbjct: 645 MAERELNLARDRSGKYAQEHMKEDNNVKQMVVAGSKGSFINISQMSVCVGQQSVEGR--- 701
Query: 339 RMPRELSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHA--VVESSFLTGLNPLECFAHSVA 396
R+P S+P F+ + P A VE+S+L GL P E F H++A
Sbjct: 702 RIPFGFRH---------RSLPHFTK-----DDFGPDARGFVENSYLRGLTPQEFFFHAMA 747
Query: 397 NRDSSFSDNADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTDKDSSCDS 454
R+ G + RRL+ + D+ YDGTVRN G+ LIQF Y D D
Sbjct: 748 GREGLIDTAVKTAETGYIQRRLVKALEDVMVCYDGTVRNSLGD-LIQFIYGED---GMDG 803
Query: 455 GFQE 458
F E
Sbjct: 804 AFIE 807
>F8TBT6_9EUKA (tr|F8TBT6) DNA-directed RNA polymerase (Fragment) OS=Malawimonas
jakobiformis GN=Rpb1 PE=3 SV=1
Length = 1042
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 118/477 (24%), Positives = 199/477 (41%), Gaps = 65/477 (13%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M+ VRVLP S+ +N +P DFDGD ++ ++PQS R EL EL+ + R +++
Sbjct: 391 MMGHRVRVLPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSHETRAELEELMMVPRNIVS 449
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCDK--KLTPPPSIIKAPSRNN 118
Q+ + ++ + QDSL + + L + M P P+I+K
Sbjct: 450 PQANKPVMGIVQDSLLGTKLFTKRDTFLERDLVNNTLMWLPSWDGHVPKPAILKP----K 505
Query: 119 SLWSGKQLFSMLLPS---------------NFDYSFPPNGVSVSDGELTSSFESSGWLRD 163
LW+GKQ+FS+++P N D++ V + GE+ S + +
Sbjct: 506 QLWTGKQVFSLIVPPVNVLRKSIGAPDKEDNDDFTASDTKVRIEQGEVLSGIVCKNTVGN 565
Query: 164 SECNIFQRLV-ERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEE 222
+ ++ + E + T N L Q V+ WL GF A M+
Sbjct: 566 ASGSLVHIIWNELGHEATRNFLDSVQTVINYWLMNRGF------SIGIGDTIADPATMQN 619
Query: 223 ISYGLQEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVD 282
I+ + ++Q D G L+ + ++ +E ++ AL++ +
Sbjct: 620 ITKIIGRSKQEVS------DLITQLHEGKLEATPGRTLME----TFEMKVNTALNKARDE 669
Query: 283 AFRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPR 342
A + ++++ NA M AGSKG+ + + Q C+G Q+ + R+P
Sbjct: 670 AGKAAVGSLRAT--------NAAKEMVTAGSKGSNINIAQMIACVGQQNVEGK---RIPY 718
Query: 343 ELSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSF 402
++P F + + VE+S+L GLNP E F H++ R+
Sbjct: 719 GFRN---------RTLPHFVTNDMTPES---RGFVENSYLRGLNPQEFFFHAMGGREGLI 766
Query: 403 SDNADL--PGTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTDKDSSCDSGFQ 457
G + RRLM M D+ YDGTVRN G +++QF Y D FQ
Sbjct: 767 DTAVKTSETGYIQRRLMKAMEDVMVKYDGTVRNSVG-EVVQFLYGEDGFDGTAIEFQ 822
>Q2PYP9_9FUNG (tr|Q2PYP9) DNA-directed RNA polymerase (Fragment)
OS=Neocallimastix sp. GE13 GN=RPB1 PE=3 SV=1
Length = 813
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 114/467 (24%), Positives = 197/467 (42%), Gaps = 66/467 (14%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M+ ++V+P S+ +N SP DFDGD ++ ++PQS + E+ E+ + +Q+++
Sbjct: 188 MMGHKIKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSYETKAEVQEICMVPKQIVS 246
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCD--KKLTPPPSIIKAPSRNN 118
Q+ + ++ + QD+L + L + + M + PPP I+K
Sbjct: 247 PQANKPVMGIVQDTLCGIRKFTKRDCFLTRDFVMNIIMWVPDWDGVVPPPCILKPI---- 302
Query: 119 SLWSGKQLFSMLLPS------------NFDYSFPP--NGVSVSDGELTSSFESSGWLRDS 164
LW+GKQ+ S+++P N D P V + +GEL + + S
Sbjct: 303 PLWTGKQIMSLIIPKINIVGYHSTHPDNEDTDISPGDTKVLIENGELLAGILCKKTVGSS 362
Query: 165 ECNIFQRLVERFQDKTLNLLYDA-QKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEI 223
+ I ++ + +T L ++ Q V+ WL GF A N ME I
Sbjct: 363 QNGIIHVVMNEYGPETAKLFFNGTQTVVNYWLLQNGF------SIGIGDTIADRNTMETI 416
Query: 224 SYGLQEAEQACDFNQLLVDHYCDF-LSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVD 282
+ + A+QA + +L C L + S+ LN + + A ++ S+
Sbjct: 417 NKAIASAKQAVN-EVILQAQQCKLECQPGLTIRETFESLVNRHLNKARDSAGASAQKSLR 475
Query: 283 AFRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPR 342
+ N M +GSKG+ + + Q + C+G Q+ + R+P
Sbjct: 476 EY------------------NNVKQMVVSGSKGSFINISQMTACVGQQNVEGK---RIPF 514
Query: 343 ELSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSF 402
++P F+ K Q VE+S+L GL P E F H++ R+
Sbjct: 515 GFK---------YRTLPHFT---KDDQSPESRGFVENSYLRGLTPQEFFFHAMGGREGLI 562
Query: 403 SDNADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + D+ YDGTVRN +G+ +IQF Y D
Sbjct: 563 DTAVKTAETGYIQRRLIKSLEDVSIKYDGTVRNSFGH-IIQFCYGED 608
>F8QSX8_9EUKA (tr|F8QSX8) DNA-directed RNA polymerase (Fragment) OS=Trichomonas
gallinae GN=Rpb1 PE=3 SV=1
Length = 1019
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 120/455 (26%), Positives = 195/455 (42%), Gaps = 76/455 (16%)
Query: 20 LC-CSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAA 78
LC +P DFDGD ++ ++PQS AAR E+ ++A+ +Q+I+ Q+ R ++ L QD+L
Sbjct: 405 LCDTTPYNADFDGDEMNLHVPQSQAARAEVRHIMAVPKQIISPQANRPVIGLVQDALLGC 464
Query: 79 YMLMEDGVLLNLYEIQQLQMLCDKK---LTPPPSIIKAPSRNNSLWSGKQLFSMLLPS-N 134
+L + L ++ L M + PPP I+K LWSGKQ+FS+ LP N
Sbjct: 465 RLLSKRDTFLTRNQVMNLMMWLPTNKDTILPPPCILKPV----QLWSGKQVFSLFLPKIN 520
Query: 135 FDYS------------FPPNG--VSVSDGELTSSFESSGWLRDSECNIFQRLVERFQ-DK 179
+D+ P N V + DG L + SE ++ ++ + D
Sbjct: 521 YDHFSNGASDDDKKSWMPANDTRVIIRDGHLLAGLLDKTSCARSEGSLTHVVINSYNTDI 580
Query: 180 TLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGLQEAEQACDFNQL 239
+ L Q ++ WL GF +++++++ + E E N
Sbjct: 581 AKDFLNQTQLIVNNWLEHRGF------SIGLIDCVVPQSVLDQVEEKINEVED----NVK 630
Query: 240 LVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHMFRNIQSLVDKYA 299
V SG L+ + I ++E +++AL+++ DA++ L+ K
Sbjct: 631 GVIRTAQ--SGKLERRPGMTYIQ----SFEAEVNSALNQILGDAYK--------LIQKDI 676
Query: 300 SKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCAAWNSEKGLNSMP 359
+ N+F+ M AGSKG + Q +G+ A N E
Sbjct: 677 RRDNSFIEMLTAGSKGANFNVTQ---VIGV----------------VAQQNIEGKRVKFG 717
Query: 360 MFSNTLKSIQCY----IPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNA---DLPGTL 412
TL Q + IP S++ GL P E H++ R + D A G +
Sbjct: 718 FNGRTLPHYQKHEYGLIPRGFCRHSYIEGLTPPEFLFHAMGGR-TGIIDTACKTSDTGYI 776
Query: 413 TRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
RRL+ M + AYDGTVRN N+++QF Y D
Sbjct: 777 QRRLVKSMESHHVAYDGTVRNSL-NEVVQFVYGGD 810
>A1YIB7_GLOMO (tr|A1YIB7) DNA-directed RNA polymerase (Fragment) OS=Glomus
mosseae GN=RPB1 PE=3 SV=1
Length = 1054
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 115/474 (24%), Positives = 203/474 (42%), Gaps = 68/474 (14%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M+ VRV+P S+ +N SP DFDGD ++ ++PQSV + E+ E+ + +Q+++
Sbjct: 406 MMGHKVRVMPFSTF-RLNLSVTSPYNADFDGDEMNMHVPQSVETKAEIKEICMVPKQIVS 464
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLC---DKKLTPPPSIIKAPSRN 117
QS + ++ + QD+L A + L+ + + M D K+ P P I+K
Sbjct: 465 PQSNKPVMGIVQDTLCAIRKFTKRDCFLSKDLVMNILMWVKDWDGKI-PIPCILKPI--- 520
Query: 118 NSLWSGKQLFSMLLPS-----NFDYSFPPNG-----------VSVSDGELTSSFESSGWL 161
LW+GKQ+ SM++P N +S P+G V + DGEL +
Sbjct: 521 -PLWTGKQILSMIIPKGINSXNLRHSTHPDGENTDMSPGDTKVLIEDGELLCGIVCKKTV 579
Query: 162 RDSECNIFQRLVERF-QDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMM 220
++ + +++ ++ + L Q V+ WL GF A ++ M
Sbjct: 580 GTAQQGLIHVIMQELGPNRAKDFLNGCQAVVNYWLLQNGF------SIGIGDTIADKDTM 633
Query: 221 EEISYGLQEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVS 280
+ I+ + A++ + + + Q+ ++E ++ L+
Sbjct: 634 DSITQTINNAKERVK----------EVILSAQQNKLECQPGMTIRESFENQVNKELNTAR 683
Query: 281 VDAFRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRM 340
A R +K S+ N M AGSKG+ + + Q + C+G Q+ + R+
Sbjct: 684 DSAGRS--------AEKSLSEDNNVKQMVIAGSKGSFINISQMTACVGQQNVEGK---RI 732
Query: 341 PRELSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDS 400
P ++P F+ S + VE+S+L GL P E F H++ R+
Sbjct: 733 PYGFK---------FRTLPHFTKDDHSPES---RGFVENSYLRGLTPQEFFFHAMGGREG 780
Query: 401 SFSDNADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTDKDSSC 452
G + RRL+ + D+ YDGTVRN G+ ++QF Y D +C
Sbjct: 781 LIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGD-ILQFCYGEDGMDAC 833
>I7B913_9ASCO (tr|I7B913) DNA-directed RNA polymerase (Fragment) OS=Candida
multigemmis PE=3 SV=1
Length = 872
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 125/470 (26%), Positives = 208/470 (44%), Gaps = 76/470 (16%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M++ V+V+P S+ +N SP DFDGD ++ ++PQS R EL+++ A+ Q+++
Sbjct: 268 MMAHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSPETRSELSQICAVPLQIVS 326
Query: 61 GQSGRNLLSLSQDSLTAAY-MLMEDGVLLNLYEIQQLQMLCD-----KKLTPPPSIIKAP 114
QS + ++ + QD+L M + D N E Q+ + + PPP+I+K
Sbjct: 327 PQSNKPVMGIVQDTLCGVRKMTLRD----NFIEYDQVMNMSYWIPDWDGVIPPPAIVKP- 381
Query: 115 SRNNSLWSGKQLFSMLLPSN-----FD-----YSFPPNGVSVSDGELTSSFESSGWLRDS 164
LWSGKQL SM +P FD S +G+ + DGE+ + +
Sbjct: 382 ---KPLWSGKQLLSMAIPKGIHLQRFDDGVNLMSPKDSGMLIVDGEIMFGVVDKKTVGAT 438
Query: 165 ECNIFQRLV-ERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEI 223
+ ++ E+ L QKV+ WL GF A + M+++
Sbjct: 439 GGGLIHTVMREKGPQICAQLFSRIQKVVNFWLLHNGF------SIGIGDTIADSSTMKDV 492
Query: 224 SYGLQEAEQACDFNQLLVDHYCDFLSG----SLQDSDNVASIDMDSLNYEKHISAALSEV 279
+ +QEA+ ++++D + L +L++S +E ++S L++
Sbjct: 493 TTTIQEAK--AKVQEIILDAQRNTLEPEPGMTLRES------------FEHNVSRILNQA 538
Query: 280 SVDAFRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYR 339
A R N++ L N M +GSKG+ + + Q S C+G Q + R
Sbjct: 539 RDTAGRTAEVNLKDL--------NNVKQMVVSGSKGSFINISQMSACVGQQ---IVEGKR 587
Query: 340 MPRELSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRD 399
+P S S+P F+ S + VE+S+L GL P E F H++A R+
Sbjct: 588 IPFGFSD---------RSLPHFTKDDYSPES---KGFVENSYLRGLTPQEFFFHAMAGRE 635
Query: 400 SSFSDNADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + D+ YDGT RN G+ +IQF Y D
Sbjct: 636 GLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGD-IIQFVYGED 684
>K5W9B5_PHACS (tr|K5W9B5) DNA-directed RNA polymerase OS=Phanerochaete carnosa
(strain HHB-10118-sp) GN=PHACADRAFT_246551 PE=3 SV=1
Length = 1753
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 120/473 (25%), Positives = 196/473 (41%), Gaps = 63/473 (13%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M+S VR++P S+ +N P DFDGD ++ ++PQS R EL+++ + RQ+I+
Sbjct: 466 MMSHRVRLMPYSTF-RLNLSVTPPYNADFDGDEMNMHVPQSEETRAELSQIAWVPRQIIS 524
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCD--KKLTPPPSIIKAPSRNN 118
Q+ + ++ + QD+L L+ ++Q + + P P +IK
Sbjct: 525 PQANKPVMGIVQDTLCGIRKFTLRDTFLDWTQVQNILLWVPDWDGTVPTPVVIKP----K 580
Query: 119 SLWSGKQLFSMLLPSNFDYSFPP----------NGVSVSDGELTSSFESSGWLRDSECNI 168
LW+GKQL SM +P + P +GV + +GEL + S+ +
Sbjct: 581 PLWTGKQLLSMCIPRGINIHRNPDPKSSNPVFDDGVLIENGELIFGIVDKKTVGASQGGL 640
Query: 169 FQRLV-ERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGL 227
+ E+ + T L Q+V+ WL GF A ++ E+I+
Sbjct: 641 VHVVFREKGPEMTRQLFTGLQQVVNYWLFHNGFSIGIGDTIADRKTMA--HITEQIAIRK 698
Query: 228 QEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHM 287
Q Q D D L+ + + E+ ++ A + A +H+
Sbjct: 699 QTVAQIID----------DAAHDRLKPQPGMTIRESFESKVERELNLARDQNGQYAQKHL 748
Query: 288 FRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCA 347
+ N M AGSKG+ + + Q S+C+G Q + R+P
Sbjct: 749 ------------KEDNNVKQMVVAGSKGSFINISQMSVCVGQQ---IVEGRRIPFGFRH- 792
Query: 348 AWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNAD 407
++P F+ S + VE+S+L GL P E F H++A R+
Sbjct: 793 --------RTLPHFTKDDFSPEA---RGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVK 841
Query: 408 LP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTDKDSSCDSGFQE 458
G + RRL+ + D+ YDGTVRN G+ LIQF Y D D F E
Sbjct: 842 TAETGYIQRRLVKALEDVMVHYDGTVRNSLGD-LIQFVYGED---GMDGAFIE 890
>A7J587_9LECA (tr|A7J587) DNA-directed RNA polymerase (Fragment) OS=Lobariella
pallida GN=RPB1 PE=3 SV=1
Length = 1002
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 116/462 (25%), Positives = 198/462 (42%), Gaps = 61/462 (13%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M+ VRV+P S+ +N SP DFDGD ++ ++PQS R E+N+L + +++
Sbjct: 376 MMGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCMVPLNIVS 434
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCDK--KLTPPPSIIKAPSRNN 118
Q L+ QD+L Y + V LN ++ + + + P P+I+K +
Sbjct: 435 PQRNGPLMGTVQDTLCGIYKICRRDVFLNKEQVMNILLWVPDWDGVLPQPAILKPRPK-- 492
Query: 119 SLWSGKQLFSMLLPSNFDYS------FPP---NGVSVSDGELTSSFESSGWLRDSECNIF 169
W+GKQ+ S+++P + + F P +G+ VS GEL + + + I
Sbjct: 493 --WTGKQIISLVIPPGLNLTRSSSEGFSPLNDDGLFVSGGELMYGLFNKKSVGATSGGII 550
Query: 170 QRLV-ERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGL- 227
+ E+ + +N AQ V+ WL GF N ++ I +
Sbjct: 551 HIIFNEKGPEAAMNFFNGAQTVVNYWLLHNGFSIGIGDT------IPDRNTIQRIENAVN 604
Query: 228 QEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHM 287
Q+ E + + ++ + L G NV +E +S AL++ DA
Sbjct: 605 QQKEDVAEITRSATENDLEPLPGM-----NVRE------TFESKVSKALNKARDDAGTVT 653
Query: 288 FRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCA 347
++ L N M ++GSKG+ + + Q + +G Q + R+P
Sbjct: 654 EEGLKDL--------NNATQMARSGSKGSTINISQMTAVVGQQSVEGK---RIPFGFK-- 700
Query: 348 AWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNAD 407
++P F+ S + VE+S+L GL P E F H++A R+
Sbjct: 701 -------YRTLPHFTKDDYSPES---RGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVK 750
Query: 408 LP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + D+ YDGTVRN G+ ++QF Y D
Sbjct: 751 TAETGYIQRRLVKALEDVMAKYDGTVRNSLGD-IVQFVYGED 791
>R7SV30_DICSQ (tr|R7SV30) Beta and beta-prime subunits of DNA dependent
RNA-polymerase OS=Dichomitus squalens (strain LYAD-421)
GN=DICSQDRAFT_66181 PE=4 SV=1
Length = 1749
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 118/462 (25%), Positives = 198/462 (42%), Gaps = 60/462 (12%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M+S VR++P S+ +N P DFDGD ++ ++PQS R EL+++ + RQ+I+
Sbjct: 463 MMSHRVRLMPYSTF-RLNLSVTPPYNADFDGDEMNMHVPQSEETRAELSQIAWVPRQIIS 521
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCD--KKLTPPPSIIKAPSRNN 118
Q+ + ++ + QD+L L+ ++Q + + P P+IIK
Sbjct: 522 PQANKPVMGIVQDTLCGIRKFTLRDTFLDWNQVQNILLWVPDWDGTVPTPAIIKP----K 577
Query: 119 SLWSGKQLFSMLLPSNFDYSFPP----------NGVSVSDGELTSSFESSGWLRDSECNI 168
+W+GKQL SM +P + P +G+ + +G++ + S+ +
Sbjct: 578 PMWTGKQLLSMCIPRGINIFRAPDPKSNNPVFDDGMMIENGDIVFGVVEKKTVGASQGGL 637
Query: 169 FQRLV-ERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGL 227
+ E+ + T L Q+V+ WL GF A M+ I
Sbjct: 638 VHVVFREKGPEATRTLFTGLQQVVNYWLFHNGF------SIGIGDTIADRGTMDYIQK-- 689
Query: 228 QEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHM 287
Q AE+ + Q++ D Y D L+ S + + E+ ++ A A +H+
Sbjct: 690 QIAERKQNVLQIMDDAYHD----RLRPSPGMTIRESFEKKVERELNLARDHSGQYAQKHL 745
Query: 288 FRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCA 347
+ N M AGSKG+ + + Q S+C+G Q + R+P
Sbjct: 746 ------------KEDNNVKQMVVAGSKGSFINISQMSVCVGQQSVEGK---RIPFGFRH- 789
Query: 348 AWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNAD 407
++P F+ S + VE+S+L GL P E F H++A R+
Sbjct: 790 --------RTLPHFTKDDFSPEA---RGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVK 838
Query: 408 LP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + D+ YDGTVRN G+ LIQF Y D
Sbjct: 839 TAETGYIQRRLVKALEDVQVCYDGTVRNSLGD-LIQFIYGED 879
>O00820_ACACA (tr|O00820) DNA-directed RNA polymerase (Fragment) OS=Acanthamoeba
castellanii GN=rpb1 PE=3 SV=2
Length = 1569
Score = 124 bits (310), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 123/487 (25%), Positives = 213/487 (43%), Gaps = 73/487 (14%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M+ V+++P S+ +N +P DFDGD ++ ++PQ+ AR E+ EL+ + +Q++
Sbjct: 384 MMGHKVKIMPYSTF-RLNLSVTTPYNADFDGDEMNMHVPQTPGARAEVIELMMVPKQIVT 442
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCDK--KLTPPPSIIKAPSRNN 118
QS + ++ + QD+L +L + + + + M + P P+I+K
Sbjct: 443 AQSNKPVIGIVQDTLLGGCLLTQRDTFIEKDVMMNILMWLESWDGTVPTPTILKP----K 498
Query: 119 SLWSGKQLFSMLLPSNF----------DYSFPPNGVSVSDGELTSSFESSGWLRDSECNI 168
LW+GKQ+FS+++P N D SF N V + +GEL S + L S ++
Sbjct: 499 QLWTGKQVFSLIIPRNTNFVNADDEEPDMSFTDNKVLIEEGELVSGILNKKTLGTSHKSL 558
Query: 169 FQRLV-ERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGL 227
+ E + + L Q V+ WL GF A E + +I+ +
Sbjct: 559 VHVIWNEHGSEVCKHFLNQVQHVVNYWLLHHGF------SVGVGDTIADEETLAKITQTI 612
Query: 228 QEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHM 287
++A+ QL + G L+ ++ ++E I+ L++ DA
Sbjct: 613 RKAKDEVKERQL------EAQQGQLERQPGRTMME----SFEFVINQILNKARDDAGNSA 662
Query: 288 FRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMP---REL 344
++++ + N F M AGSKG+ + + Q C+G Q+ + R+P R+
Sbjct: 663 QKSLR--------RSNNFKAMVIAGSKGSAINISQVLACVGQQNVEGK---RIPFCFRD- 710
Query: 345 SCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSD 404
++P F +K VE+S+L GL P E F H++ R+
Sbjct: 711 -----------RTLPHF---VKDDFGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDT 756
Query: 405 NADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTDKDSSCDSGFQEGTVG 462
G + RRL+ + D+ YD TVRN G+ +IQF Y D G TV
Sbjct: 757 AVKTAETGYIQRRLVKALEDVMVKYDYTVRNSLGD-VIQFLYGED-------GMDGQTVE 808
Query: 463 GEPVGAL 469
+P+ AL
Sbjct: 809 TQPLDAL 815
>A7J590_9LECA (tr|A7J590) DNA-directed RNA polymerase (Fragment) OS=Coccocarpia
erythroxyli GN=RPB1 PE=3 SV=1
Length = 997
Score = 124 bits (310), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 113/464 (24%), Positives = 199/464 (42%), Gaps = 65/464 (14%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M+ VRV+P S+ +N +P DFDGD ++ ++PQS R E+N+L + +++
Sbjct: 371 MMGHRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEETRAEINQLCMVPLNIVS 429
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCD--KKLTPPPSIIKAPSRNN 118
Q L+ + QD+L Y + V L +I + + + P P+I+K R
Sbjct: 430 PQKNGPLMGIVQDTLCGIYKICRRDVFLTKEQIMNILLWVPDWDGVLPQPAILKPRPR-- 487
Query: 119 SLWSGKQLFSMLLPSNFDYSFPP---------NGVSVSDGELTSSF---ESSGWLRDSEC 166
W+GKQ+ S+++P+ +++ P NG+ VS GEL +S G +
Sbjct: 488 --WTGKQIISLVIPTGLNFTMPSGAGWSPLNDNGLMVSGGELMYGLFTKKSVGVTPSAVV 545
Query: 167 NIFQRLVERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYG 226
+I E+ + ++ AQ V+ WL GF N +++I
Sbjct: 546 HII--FNEKGPEAAMSFFNGAQTVVNYWLLHNGF------SIGIGDTIPDRNTIQQIENA 597
Query: 227 L-QEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFR 285
+ ++ E+ ++ D+ + L G NV +E ++ AL++ DA
Sbjct: 598 VNKQKEEVASITRIATDNELEPLPGM-----NVRE------TFESKVARALNKARDDA-- 644
Query: 286 HMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELS 345
++ ++ N M ++GSKG+ + + Q + R+P
Sbjct: 645 ------GTVTEESLKDINNATQMARSGSKGSTINISQMT---AXXXXXXXEGKRIPFGFK 695
Query: 346 CAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDN 405
++P F+ S + VE+S+L GL P E F H++A R+
Sbjct: 696 ---------YRTLPHFTKDDYSPES---RGFVENSYLRGLTPTEFFFHAMAGREGLIDTA 743
Query: 406 ADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + D+ YDGTVRN G+ ++QF Y D
Sbjct: 744 VKTAETGYIQRRLVKALEDVMAKYDGTVRNSLGD-IVQFVYGED 786
>A9X971_9LECA (tr|A9X971) DNA-directed RNA polymerase (Fragment) OS=Psora
rubiformis GN=RPB1 PE=3 SV=1
Length = 973
Score = 123 bits (309), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 117/459 (25%), Positives = 199/459 (43%), Gaps = 61/459 (13%)
Query: 4 LSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQS 63
+ VRV+P S+ +N SP DFDGD ++ ++PQS R E+N+L + +++ Q
Sbjct: 358 IRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCMVPLNIVSPQR 416
Query: 64 GRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCD--KKLTPPPSIIKAPSRNNSLW 121
L+ + QD+L Y + V L ++ + + + P P+IIK +W
Sbjct: 417 NGPLMGIVQDTLCGIYKICRRDVFLTKEQVMNILLWVPDWDGVIPQPAIIKP----RPMW 472
Query: 122 SGKQLFSMLLPSNF------DYSFPP---NGVSVSDGELTSSFESSGWLRDSECNIFQRL 172
+GKQL S+++PS D F P +G+ VS+GEL + + S I +
Sbjct: 473 TGKQLVSLVIPSGLNLLRSSDDGFSPKNDDGLLVSNGELMYGLLNKKSVGASSGGIIHII 532
Query: 173 V-ERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGL-QEA 230
E+ + ++ AQ V+ WL GF +E+I + ++
Sbjct: 533 YNEKGWEAAVSFFNGAQTVVNYWLLHNGFSIGIGDTIPDRVT------IEKIKSAVDKQK 586
Query: 231 EQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHMFRN 290
+ D + ++ + L G NV +E +S AL++ DA +
Sbjct: 587 DDVTDITKEATENKLESLPGM-----NVRE------TFESKVSKALNKARDDAGTVTEES 635
Query: 291 IQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCAAWN 350
++ L N M ++GSKG+ + + Q + +G Q + R+P
Sbjct: 636 LKDL--------NNATQMARSGSKGSTINISQMTAVVGQQSVEGK---RIPLGFK----- 679
Query: 351 SEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNADLP- 409
++P F+ S + VE+S+L GL P E F H++A R+
Sbjct: 680 ----YRTLPHFTKDDYSPES---RGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAE 732
Query: 410 -GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + D+ YDGTVRN G+ ++QF Y D
Sbjct: 733 TGYIQRRLVKALEDVMCKYDGTVRNSLGD-IVQFVYGED 770
>B5RSM9_DEBHA (tr|B5RSM9) DNA-directed RNA polymerase OS=Debaryomyces hansenii
(strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 /
IGC 2968) GN=DEHA2A13618g PE=3 SV=1
Length = 1749
Score = 123 bits (309), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 122/470 (25%), Positives = 206/470 (43%), Gaps = 76/470 (16%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M++ V+V+P S+ +N SP DFDGD ++ ++PQS R EL+++ A+ Q+++
Sbjct: 460 MMAHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSQETRAELSQICAVPLQIVS 518
Query: 61 GQSGRNLLSLSQDSLTAAY-MLMEDGVLLNLYEIQQLQMLCD-----KKLTPPPSIIKAP 114
QS + ++ + QD+L M + D N E Q+ + + PPP+I+
Sbjct: 519 PQSNKPVMGIVQDTLCGVRKMTLRD----NFIEYDQVMNMLYWIPNWDGVIPPPAIVSP- 573
Query: 115 SRNNSLWSGKQLFSMLLPSN-----FD-----YSFPPNGVSVSDGELTSSFESSGWLRDS 164
LW+GKQL SM +P FD S NG+ V DGE+ + +
Sbjct: 574 ---KPLWTGKQLLSMAIPKGIHLQRFDDGKNLLSPKDNGMLVVDGEIMFGVVDKKTVGAT 630
Query: 165 ECNIFQRLV-ERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEI 223
+ ++ E+ L QKV+ WL GF A + M ++
Sbjct: 631 GGGLIHTVMREKGSQVCAQLFSSIQKVVNFWLLHNGF------SIGIGDTIADSSTMRDV 684
Query: 224 SYGLQEAEQACDFNQLLVDHYCDFLSG----SLQDSDNVASIDMDSLNYEKHISAALSEV 279
+ +Q+A+ ++++D + L +L++S +E ++S L++
Sbjct: 685 TTTIQDAKDKV--QEIILDAQSNKLEPEPGMTLRES------------FEHNVSRVLNQA 730
Query: 280 SVDAFRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYR 339
A R N++ L N M +GSKG+ + + Q S C+G Q + R
Sbjct: 731 RDTAGRSAEMNLKDL--------NNVKQMVVSGSKGSFINISQMSACVGQQ---IVEGKR 779
Query: 340 MPRELSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRD 399
+P + S+P F+ S + VE+S+L GL P E F H++A R+
Sbjct: 780 IPFGFAD---------RSLPHFTKDDYSPES---KGFVENSYLRGLTPQEFFFHAMAGRE 827
Query: 400 SSFSDNADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + D+ YDG+ RN G+ +IQF Y D
Sbjct: 828 GLIDTAVKTAETGYIQRRLVKALEDIMVHYDGSTRNSLGD-IIQFVYGED 876
>K0B5J8_9ARCH (tr|K0B5J8) DNA-directed RNA polymerase OS=Candidatus Nitrosopumilus
koreensis AR1 GN=NKOR_01595 PE=3 SV=1
Length = 1263
Score = 123 bits (308), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 200/911 (21%), Positives = 360/911 (39%), Gaps = 153/911 (16%)
Query: 6 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 65
VRVLP ++P C P DFDGD ++ ++PQS AR E L+ + QLI+ + G
Sbjct: 438 VRVLP-GKTFRLHPSVCPPYNADFDGDEMNLHVPQSEEARAEAILLMRVQDQLISPRYGG 496
Query: 66 NLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCDKKLTPPPSIIKAPSRNNSLWSGKQ 125
++ +D +T AY+L +D L++ E L ML T P +++ ++GKQ
Sbjct: 497 PIIGALRDFVTGAYLLTKDDTTLSIQEFSNLAMLGG--YTDPLPKPATKTKDGPAYTGKQ 554
Query: 126 LFSMLLPSNFDYSFP----------PNGVSVSDGELTSS-FESSGWLRDSECNIFQRLVE 174
LFS+ LP +F+Y P V + +GEL S + S + ++ R+ +
Sbjct: 555 LFSLFLPKDFNYVITSKWSKGTKGKPKDVVIKNGELISGVIDKSSIGAEEPESVLHRIAK 614
Query: 175 RFQDKTLNLLYDAQKVLC-EWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGLQEAEQA 233
+ + ++ ++ ++++ GF ++ ++++I ++
Sbjct: 615 DYGNAVGKTFLNSILIMVKQFITHYGFSYGYGDLIVPDKD--KQQILDDI-------QET 665
Query: 234 CDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHMFRNIQS 293
D L D F G+L+ L AL V+ S
Sbjct: 666 YDIVDDLTDQ---FNKGTLK------------LTRGMRPEEALEAYIVNELGKARDKAGS 710
Query: 294 LVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCAAWNSEK 353
+ NA M G++G+ L + Q + LG Q R R+ + A +
Sbjct: 711 TANDCLPADNAGKIMATTGARGSSLNVGQMAGALGQQS---RRGNRLHDGYNNRALTHYQ 767
Query: 354 GLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNA---DLPG 410
++ P H V+S++ GL+ LE F H++ R+ D A G
Sbjct: 768 EHDNNPD------------AHGFVKSNYREGLSALEFFFHAMGGRE-GLVDTAVRTQQSG 814
Query: 411 TLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTDKDSSCDSGFQEGTVGGEPVGALS 470
+ RRL+ + + YDGTVR+ +G+ ++QF Y D S E P +
Sbjct: 815 YMQRRLINALEHIRLEYDGTVRDPHGH-IVQFLYGEDGIDVQKSDHGEAF---NPSRLVE 870
Query: 471 ACAISEAAYSALGQPISLLET------SPLLN---LKNVLECGSRKKSGDQTV---SLFL 518
+ I ++ A + I L +P L +LE G K G +TV L L
Sbjct: 871 SQTIIDSGKKATKEEIETLAKKYTKTFNPRLTTLVTDALLESG-LSKDGIETVCKKGLLL 929
Query: 519 SDK-----------LGKQRYG----------FEYAALEVKNYLERVMFSDIVSTVMIMFT 557
+K + Q G F +A ++ +N + ++ V
Sbjct: 930 YNKAKVEPGQAVGIITAQSIGEPGTQMTLRTFHFAGIKERNVT--LGLPRLIELVDARKK 987
Query: 558 PQSSSLEIFNPWVCHFHLDKEIVARRKLTVHSVIESLYRRYESLTKESKVTFPN---LKI 614
P + +++I+ LD+E R+ + L + +L +S+ + L +
Sbjct: 988 PVTPTMDIY--------LDEESKKSREKAIDVARNVLQTKVSALIADSETDYATEIKLVL 1039
Query: 615 SSN----RKCSKEGGYASLNKEKE-----DVDCISVTIVESSRSSAKLEAVRDLMIPFLL 665
S N R CS A+L+ K+ + I++ +VE S ++ + A+R+ +L
Sbjct: 1040 SENRLKERGCSIAEVEAALSSNKKFKLETTGELITLKLVEESDTATAI-AIRNK----VL 1094
Query: 666 GTVIKGFLEIKKVDILWSNRSKVSNSYAGSSGELYLRVTMSSDGDSGRFWGVLINHCHRI 725
T +KG +I++V ++ + V + GS+ L V
Sbjct: 1095 NTTVKGVPDIERVTLVQKDDEWVIQT-TGSNVAKVLEVK--------------------- 1132
Query: 726 MPMIDWTRSHPDNIHHFCSAYGIDAGRQYFLHSLASATTETGKSILPKHLHLVANSLSAS 785
ID +N+ GI+A R ++ L S + G + +++ LVA+ + +
Sbjct: 1133 --GIDKKNVRTNNVFEIAGTLGIEAARNSLINELNSTLEDQGLEVDNRYIMLVADLMCSR 1190
Query: 786 GEFVGLNAKGIGRQRKHASVSSPFVQACFSNPGTSFIKAAKSGVLDDLQGCLDALAWGKC 845
G + IGR + S +A F + AA G ++ L+G + + G
Sbjct: 1191 GYM-----QQIGRHGIAGTKDSVLARAAFEITVPTIAHAALGGEIEQLKGITENVIVGSN 1245
Query: 846 MSMGTSGQFDI 856
+ +G SG D+
Sbjct: 1246 IPIG-SGTVDL 1255
>I7AW86_9ASCO (tr|I7AW86) DNA-directed RNA polymerase (Fragment)
OS=Spencermartinsiella europaea PE=3 SV=1
Length = 868
Score = 123 bits (308), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 116/466 (24%), Positives = 205/466 (43%), Gaps = 68/466 (14%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M++ V+V+P S+ +N SP DFDGD ++ ++PQS R EL+++ A+ Q+++
Sbjct: 268 MMAHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQICAVPLQIVS 326
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCD--KKLTPPPSIIKAPSRNN 118
QS + ++ + QD+L + + ++ ++ + + + P P+I+K
Sbjct: 327 PQSNKPVMGIVQDTLCGVRKMTKRDTFIDYEQVMNILLWIPGWDGVVPQPAILKP----R 382
Query: 119 SLWSGKQLFSMLLPSN-----FDYSFP-----PNGVSVSDGELTSSFESSGWLRDSECNI 168
+W+GKQ+ SM +PS FD P NG+ + GE+ + + +
Sbjct: 383 PMWTGKQMVSMTIPSGIFLQRFDDGNPISSPKDNGMLIQKGEIIYGVVDKKTVGATGGGL 442
Query: 169 FQRLVERFQDKT-LNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGL 227
++ K + QKV+ WL GF A M +I+ +
Sbjct: 443 IHTIMREKGPKVCAGFFGNIQKVVNYWLLHNGF------SIGIGDTIADGATMRDIANTI 496
Query: 228 QEAEQACDFNQLLVDHYCDFLSG----SLQDSDNVASIDMDSLNYEKHISAALSEVSVDA 283
EA+Q +++++ + LS +L++S +E ++S L++ +A
Sbjct: 497 SEAKQKV--QEIILEAQSNKLSPEPGMTLRES------------FEHNVSRVLNQARDNA 542
Query: 284 FRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRE 343
R +++ L N M AGSKG+ + + S C+G Q + R+P
Sbjct: 543 GRSAEMSLKEL--------NNVKQMVVAGSKGSFINISLMSACVGQQ---IVEGKRIPFG 591
Query: 344 LSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFS 403
G S+P F+ S + VE+S+L GL P E F H++A R+
Sbjct: 592 F---------GDRSLPHFTKDDYSPES---KGFVENSYLRGLTPQEFFFHAMAGREGLID 639
Query: 404 DNADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + D+ YDGT RN G+ +IQF Y D
Sbjct: 640 TAVKTAETGYIQRRLVKALEDIMVQYDGTTRNSLGD-VIQFVYGED 684
>F9CUN5_9ARCH (tr|F9CUN5) DNA-directed RNA polymerase OS=Candidatus Nitrosoarchaeum
koreensis MY1 GN=MY1_0309 PE=3 SV=1
Length = 1263
Score = 123 bits (308), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 197/919 (21%), Positives = 361/919 (39%), Gaps = 169/919 (18%)
Query: 6 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 65
VRVLP ++P C P DFDGD ++ ++PQS AR E L+ + QLI+ + G
Sbjct: 438 VRVLP-GKTFRLHPSVCPPYNADFDGDEMNLHVPQSEEARAEAILLMRVQDQLISPRYGG 496
Query: 66 NLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML---CDKKLTPPPSIIKAPSRNNSLWS 122
++ +D +T AY+L +D +L E ML DK P P+ +++ +++
Sbjct: 497 PIIGALRDFVTGAYLLTKDDTVLTPQEFYNYAMLGGYTDK--LPKPA---TKTKDGLMYT 551
Query: 123 GKQLFSMLLPSNFDYSF----------PPNGVSVSDGELTSS-FESSGWLRDSECNIFQR 171
GKQLFS+ LP +F+Y V + +GEL S + S + ++ R
Sbjct: 552 GKQLFSLFLPKDFNYVITSKWSKGTKGAQKDVVIKNGELLSGVIDKSSIGAEEPESVLHR 611
Query: 172 LVERFQD-KTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGLQEA 230
+ + + + K N L ++ ++++ GF SYG +
Sbjct: 612 IAKDYGNTKAKNFLNSILIMVKQYITHYGF-----------------------SYGYADL 648
Query: 231 EQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHI---------SAALSEVSV 281
E Q ++D +Q++ + S D+ S YEK AL V
Sbjct: 649 EVPEKEKQQILD--------DIQETYGIIS-DLTS-QYEKGTLKLTRGMRPEEALEAYIV 698
Query: 282 DAFRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMP 341
+ D+ + NA M G++G+ L + Q + LG Q R R+
Sbjct: 699 NELGKARDKAGMTADQSLDQSNAGRIMATTGARGSALNIGQMAGALGQQS---RRGSRL- 754
Query: 342 RELSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSS 401
A +N+ ++P + K+ H V+S++ GL+ LE F H++ R+
Sbjct: 755 ----HAGYNN----RALPHYQEHDKNPDA---HGFVKSNYREGLSALEFFFHAMGGRE-G 802
Query: 402 FSDNA---DLPGTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTDKDSSCDSGFQE 458
D A G + RRL+ + + YDGTVR+ +G+ +IQF Y D S E
Sbjct: 803 LVDTAVRTQQSGYMQRRLINALEHIRLEYDGTVRDPHGH-IIQFLYGEDGIDVAKSDHGE 861
Query: 459 G------------TVGGEPVGALSACAISEAAYSALGQPISLLETSPLLNLKNVLECGS- 505
G+ +++ + L + LL+ K E
Sbjct: 862 AFNVNRLIESQIIVDSGKKATKEEITELTKKYTKTFNPRLKELVSEGLLDSKLSKEGAEI 921
Query: 506 -----------RKKSGDQTVSLFLSDKLGK-----QRYGFEYAALEVKNYLERVMFSDIV 549
K Q V + + +G+ F +A + +N + ++
Sbjct: 922 VCKKGLSLYNKAKVEPGQAVGIITAQSIGEPGTQMTLRTFHFAGIAERNVT--LGLPRLI 979
Query: 550 STVMIMFTPQSSSLEIFNPWVCHFHLDKEIVARRKLTVHSVIESLYRRYESLTKESKVTF 609
V P + +++I+ LD E R+ + L + +L +S+ +
Sbjct: 980 ELVDARKKPVTPTMDIY--------LDNESKKSREKAIDIARNVLQTKVSALISDSETDY 1031
Query: 610 PN---LKISSN----RKCSKEGGYASLNKEKE-----DVDCISVTIVESSRSSAKLEAVR 657
+ L +S+N R C+ A+L K+ D I++ +V+ S + + A+R
Sbjct: 1032 TSQIKLILSANRLKERGCTVSEVEAALQSNKKFKIETTGDLITLKLVDESDAPTVI-AIR 1090
Query: 658 DLMIPFLLGTVIKGFLEIKKVDILWSNRSKVSNSYAGSSGELYLRVTMSSDGDSGRFWGV 717
+ +L T +KG +I++V ++ + E ++ T S+ G+
Sbjct: 1091 NK----VLNTTVKGVPDIERVTLVQKD------------DEWVIQTTGSNIAKVLEVQGI 1134
Query: 718 LINHCHRIMPMIDWTRSHPDNIHHFCSAYGIDAGRQYFLHSLASATTETGKSILPKHLHL 777
D +N+ GI+A R ++ L + + G + +++ L
Sbjct: 1135 ------------DKKNVRTNNVFEIAGTLGIEASRNALINELKNTLEDQGLEVDNRYIML 1182
Query: 778 VANSLSASGEFVGLNAKGIGRQRKHASVSSPFVQACFSNPGTSFIKAAKSGVLDDLQGCL 837
V++ + + G + IGR + S +A F + AA +G ++ L+G
Sbjct: 1183 VSDLMCSRGYM-----QQIGRHGIAGTKDSVLARAAFEITVPTIAHAALAGEVEQLKGIT 1237
Query: 838 DALAWGKCMSMGTSGQFDI 856
+ + G + +G SG D+
Sbjct: 1238 ENVIVGSMIPIG-SGTVDL 1255
>M7WX53_RHOTO (tr|M7WX53) DNA-directed RNA polymerase II subunit RPB1
OS=Rhodosporidium toruloides NP11 GN=RHTO_08014 PE=4
SV=1
Length = 1770
Score = 123 bits (308), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 121/480 (25%), Positives = 210/480 (43%), Gaps = 71/480 (14%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M++ V+++P S+ +N SP DFDGD ++ ++PQS R EL + A+ R +I+
Sbjct: 467 MMAHRVKLMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRSELINIAAVARNIIS 525
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCDK--KLTPPPSIIKAPSRNN 118
Q+ + ++ + QD+L G ++L IQ + + + + PPP+I+K
Sbjct: 526 PQANKPVMGIVQDTLCGIRKFTLRGCFMDLEFIQNILLWVPEWDGVIPPPAILKP----K 581
Query: 119 SLWSGKQLFSMLLPSNFDY--------SFPP--NGVSVSDGEL---TSSFESSGWLRDSE 165
LW+GKQ+ SM +P+ + + PP +G+ + DG++ T ++ G +
Sbjct: 582 PLWTGKQILSMCIPAGINLYRASGSGTTNPPEDDGMFIEDGQVMFGTVDKKTVGTSQGGL 641
Query: 166 CNIFQRLVERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISY 225
++ R E+ + + QKV+ WL GF + ME I+
Sbjct: 642 IHVIYR--EKGHEVCRDWFSGVQKVVNFWLLHNGF------SIGIGDTVPDKGTMEAITG 693
Query: 226 GLQEAEQACD--FNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDA 283
+ A++ Q D ++++S +E ++ AL++ +
Sbjct: 694 FIDTAKREVSNIIQQAQNDQLEPEPGMTVRES------------FESKVTRALNQARDSS 741
Query: 284 FRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRE 343
R R++++ N M AGSKG+ + + Q S C+G Q + R P
Sbjct: 742 GRSAERSLKA--------DNNVKQMVVAGSKGSFINISQMSACVGQQ---IVEGKRCPFG 790
Query: 344 LSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFS 403
++P F+ S + VE+S+L GL P E F H++A R+
Sbjct: 791 FK---------YRTLPHFAKDDYSPEA---RGFVENSYLRGLTPQEFFFHAMAGREGLID 838
Query: 404 DNADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTDKDSSCDSGFQEGTV 461
G + RRL+ + D+ AYDGTVRN G+ ++QF Y D D F E V
Sbjct: 839 TAVKTAETGYIQRRLVKALEDVMVAYDGTVRNSLGD-VVQFCYGED---GMDGAFIEEQV 894
>I7A069_9ASCO (tr|I7A069) DNA-directed RNA polymerase (Fragment) OS=Hyphopichia
heimii PE=3 SV=1
Length = 872
Score = 123 bits (308), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 119/466 (25%), Positives = 204/466 (43%), Gaps = 68/466 (14%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M++ V+V+P S+ +N SP DFDGD ++ ++PQS R EL+ + A+ Q+++
Sbjct: 268 MMAHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSPETRAELSLICAVPLQIVS 326
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCDK--KLTPPPSIIKAPSRNN 118
QS + ++ + QD+L + + ++ + + PPP+I+K
Sbjct: 327 PQSNKPVMGIVQDTLCGVRKMTLRDTFIEYDQVMNMLYWIPNWDGVIPPPAIVKP----K 382
Query: 119 SLWSGKQLFSMLLPSN-----FD-----YSFPPNGVSVSDGELTSSFESSGWLRDSECNI 168
LWSGKQL SM +P FD S NG+ + DGE+ + + + +
Sbjct: 383 PLWSGKQLLSMAIPKGIHLQRFDDGTNLMSPKDNGMLIVDGEIMFGVVTKLTVGATGGGL 442
Query: 169 FQRLVERFQDKTLNLLYDA-QKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGL 227
++ L+ A QKV+ WL GF A + M+ ++ +
Sbjct: 443 IHTVMREKGPYVCAQLFSAIQKVVNYWLLHNGF------SIGIGDTIADSDTMKTVTTTI 496
Query: 228 QEAEQACDFNQLLVDHYCDFLSG----SLQDSDNVASIDMDSLNYEKHISAALSEVSVDA 283
QEA+ +++++ + L +L++S +E ++S L++ A
Sbjct: 497 QEAKNKV--QEIILEAQQNKLEPEPGMTLRES------------FEHNVSRVLNQARDTA 542
Query: 284 FRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRE 343
R N++ L N M +GSKG+ + + Q S C+G Q + R+P
Sbjct: 543 GRSAEMNLKDL--------NNVKQMVTSGSKGSFINISQMSACVGQQ---IVEGKRIPFG 591
Query: 344 LSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFS 403
+ S+P F+ S + VE+S+L GL P E F H++A R+
Sbjct: 592 FAD---------RSLPHFTKDDYSPES---KGFVENSYLRGLTPQEFFFHAMAGREGLID 639
Query: 404 DNADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + D+ YDGT RN G+ +IQF Y D
Sbjct: 640 TAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGD-IIQFVYGED 684
>Q25203_9CAEN (tr|Q25203) DNA-directed RNA polymerase (Fragment) OS=Ilyanassa
obsoleta PE=2 SV=1
Length = 1343
Score = 123 bits (308), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 124/482 (25%), Positives = 205/482 (42%), Gaps = 71/482 (14%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M+ V+VLP S+ +N +P DFDGD ++ ++PQS+ R E+ L A+ R +I
Sbjct: 383 MMCHRVKVLPWSTF-RMNLSVTTPYNADFDGDEMNLHLPQSLETRAEIMNLCAVPRMIIT 441
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLC---DKKLTPPPSIIKAPSRN 117
Q+ R ++ + QD+LTA + + V L ++ L M D ++ P P+IIK
Sbjct: 442 PQANRPVMGIVQDTLTAVRKMTKRDVFLTRAQMMHLLMFLPTWDGRM-PQPAIIKP---- 496
Query: 118 NSLWSGKQLFSMLLPSNFD----YSFPPNG---------------VSVSDGELTSSFESS 158
LW+GKQ+FS+++P + +S P+G V + DGEL S
Sbjct: 497 EPLWTGKQIFSLVIPGRVNVIRTHSTHPDGEDSGPYKWISPGDTKVLIEDGELISGILCK 556
Query: 159 GWLRDSECNIFQRLVERFQDKTLNLLY-DAQKVLCEWLSMTGFXXXXXXXXXXXXXCARE 217
L S ++ + + LY + Q V+ WL + G A +
Sbjct: 557 KTLGTSAGSLVHIVFLEMGFEVAGELYGNIQTVVNNWLLIEGH------SIGIGDTIADQ 610
Query: 218 NMMEEISYGLQEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALS 277
EI +++A+ D +++ + D L + ++ +E ++ L+
Sbjct: 611 QTYHEIQETIRKAK--ADVIEVIEKAHNDELEPTPGNTLR--------QTFENQVNRILN 660
Query: 278 EVSVDAFRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLS 337
+ S K S+ N F M AGSKG+ + + Q C+G Q++ +
Sbjct: 661 DAR--------DKTGSKAQKSLSEFNNFKAMVVAGSKGSKINISQVIACVGQQNAEGK-- 710
Query: 338 YRMPRELSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVAN 397
R+P ++P F +K VE+S+L GL P E + H++
Sbjct: 711 -RIPFGFR---------YRTLPHF---IKDDYGPESRGFVENSYLAGLTPSEFYFHAMGG 757
Query: 398 RDSSFSDNADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTDKDSSCDSG 455
R+ G + RRL+ M + YDGTVRN QL+Q Y D +C
Sbjct: 758 REGLIDTAVKTAETGYIQRRLIKAMESVMVKYDGTVRNQV-EQLVQLGYGEDGLDACHVE 816
Query: 456 FQ 457
FQ
Sbjct: 817 FQ 818
>M5FQ84_DACSP (tr|M5FQ84) Subunit of DNA dependent RNA-polymerase OS=Dacryopinax
sp. (strain DJM 731) GN=DACRYDRAFT_118311 PE=4 SV=1
Length = 1770
Score = 123 bits (308), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 111/461 (24%), Positives = 205/461 (44%), Gaps = 59/461 (12%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M+S VRV+P S+ +N SP DFDGD ++ ++PQS R EL E+ + RQ+++
Sbjct: 466 MMSHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELKEIAWVPRQIVS 524
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCD--KKLTPPPSIIKAPSRNN 118
Q+ + ++ + QD+L Y + + + L+ +Q + + P P IIK
Sbjct: 525 PQANKPVMGIVQDTLCGIYKMTQRDIFLDWPLVQNILLWVPDWDGTIPHPCIIKP----K 580
Query: 119 SLWSGKQLFSMLLP-------SNFDYSFPPN--GVSVSDGELTSSFESSGWLRDSECNIF 169
+WSGKQ+ ++++P N P N + + +GE+ + G + S +
Sbjct: 581 PMWSGKQIIALVIPQGINLANGNLSIGNPINDDALIIENGEIMMGIFNKGIVGSSAGGLI 640
Query: 170 QRLV-ERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGLQ 228
+ ER + T +++ Q V+ WL GF +++M I +
Sbjct: 641 HVVFRERGPEVTRDMIGGIQTVVNYWLFHNGFSIGIGDTVPDKP--TEKSIMTNIETAKE 698
Query: 229 EAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHMF 288
+ + + + + G L+ + + ++E ++ L++V + +
Sbjct: 699 DVRKVVE----------EAVKGLLKPRPGMTIRE----SFEASVNGILNQVRDKSGKSAQ 744
Query: 289 RNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCAA 348
++++ + N TM AGSKG+ + + Q S +G Q+ R+P
Sbjct: 745 QSLK--------RDNNVKTMVTAGSKGSFINISQMSAMVGQQNV---EGQRIPFGFKH-- 791
Query: 349 WNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNADL 408
++P F+ S + VE+S+L GL P E F H++A R+
Sbjct: 792 -------RTLPHFTKDDFSPES---RGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKT 841
Query: 409 P--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ M D+ AYDGT+RN G+ ++Q++Y D
Sbjct: 842 AETGYIQRRLVKAMEDVMVAYDGTIRNSLGD-VLQWTYGED 881
>A5H2E6_9LECA (tr|A5H2E6) DNA-directed RNA polymerase (Fragment) OS=Asahinea
scholanderi GN=RPB1 PE=3 SV=1
Length = 983
Score = 122 bits (307), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 111/462 (24%), Positives = 202/462 (43%), Gaps = 61/462 (13%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M+ VRV+P S+ +N SP DFDGD ++ ++PQS R E+N+L + +++
Sbjct: 371 MMGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCMVPLNIVS 429
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCD--KKLTPPPSIIKAPSRNN 118
Q L+ + QD+L Y + V L ++ + + + P P+I+K
Sbjct: 430 PQRNGPLMGIVQDTLCGIYKMCRRDVFLTKEQVMNILLWVPDWDGVIPQPAIVKPL---- 485
Query: 119 SLWSGKQLFSMLLPSNFDY------SFPP---NGVSVSDGELTSSFESSGWLRDSECNIF 169
++W+GKQ+ S+++P+ + F P +G+ +S GEL + + S +
Sbjct: 486 AMWTGKQILSLVIPTGLNLLRGSKEGFSPLNDDGLLISGGELMYGLLNKKSVGASGGGVI 545
Query: 170 QRLV-ERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGLQ 228
+ E+ + +N AQ V+ WL GF + +Q
Sbjct: 546 HIVFNEKGPEAAMNFFNGAQTVVNYWLLHNGFSIGIGDTIPD-------------RHTIQ 592
Query: 229 EAEQACDFNQLLVDHYCDFLSGSLQDS-DNVASIDMDSLNYEKHISAALSEVSVDAFRHM 287
+ E+A + D D + ++ +++ +++ +E +S AL++ DA
Sbjct: 593 QIEKAVSTQK---DEVTDITRSATENELESLPGMNVRE-TFESKVSKALNKARDDA---- 644
Query: 288 FRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCA 347
++ +K N M ++GSKG+ + + Q + +G Q + R+P
Sbjct: 645 ----GTVTEKSLKDLNNATQMARSGSKGSTINISQMTAVVGQQSVEGK---RIPFGFK-- 695
Query: 348 AWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNAD 407
++P F+ S + VE+S+L GL P E F H++A R+
Sbjct: 696 -------YRTLPHFTKDDYSPES---RGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVK 745
Query: 408 LP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + D+ YDGTVRN G+ ++QF Y D
Sbjct: 746 TAETGYIQRRLVKALEDVMAKYDGTVRNSLGD-IVQFVYGED 786
>I7AW69_9ASCO (tr|I7AW69) DNA-directed RNA polymerase (Fragment)
OS=Scheffersomyces spartinae PE=3 SV=1
Length = 872
Score = 122 bits (307), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 116/466 (24%), Positives = 204/466 (43%), Gaps = 68/466 (14%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M++ V+V+P S+ +N SP DFDGD ++ ++PQS R EL+++ A+ Q+I+
Sbjct: 268 MMAHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSPETRSELSQICAVPLQIIS 326
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCDK--KLTPPPSIIKAPSRNN 118
QS + ++ + QD+L + + + ++ + + PPP+++K
Sbjct: 327 PQSNKPVMGIVQDTLCGIRKMTLRDIFIEYDQVMNMLYWIPNWDGVIPPPAVMKP----K 382
Query: 119 SLWSGKQLFSMLLPSNF---------DYSFPPN-GVSVSDGELTSSFESSGWLRDSECNI 168
LW+GKQL SM +P D S P + G+ + DGE+ + + +
Sbjct: 383 QLWTGKQLLSMAIPKGIHLQRFDDGRDLSCPKDKGMLIVDGEIMFGVVDKKTVGATGGGL 442
Query: 169 FQRLVERFQDKTLNLLYDA-QKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGL 227
+ + ++ A QKV+ WL GF A M+ I+ +
Sbjct: 443 IHTVFREKGPQVCAQMFSAIQKVVNFWLLHNGF------SIGIGDTIADAETMKTITSTI 496
Query: 228 QEAEQACDFNQLLVDHYCDFLSG----SLQDSDNVASIDMDSLNYEKHISAALSEVSVDA 283
+EA+ ++++D + L +L++S +E ++S L++ A
Sbjct: 497 REAKDKV--QEIILDAQLNKLEPEPGMTLRES------------FEHNVSRVLNQARDTA 542
Query: 284 FRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRE 343
R N++ L N M +GSKG+ + + Q S C+G Q + R+P
Sbjct: 543 GRSAEMNLKDL--------NNVKQMVTSGSKGSFINISQMSACVGQQ---IVEGKRIPFG 591
Query: 344 LSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFS 403
G ++P F+ S + VE+S+L GL P E F H++A R+
Sbjct: 592 F---------GDRTLPHFTKDDYSPES---KGFVENSYLRGLTPQEFFFHAMAGREGLID 639
Query: 404 DNADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RR++ + D+ YDGT RN G+ +IQF Y D
Sbjct: 640 TAVKTAETGYIQRRIIKALEDIMVHYDGTTRNSLGD-IIQFVYGED 684
>I7AB08_DEBHN (tr|I7AB08) DNA-directed RNA polymerase (Fragment) OS=Debaryomyces
hansenii PE=3 SV=1
Length = 872
Score = 122 bits (307), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 122/470 (25%), Positives = 206/470 (43%), Gaps = 76/470 (16%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M++ V+V+P S+ +N SP DFDGD ++ ++PQS R EL+++ A+ Q+++
Sbjct: 268 MMAHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSQETRAELSQICAVPLQIVS 326
Query: 61 GQSGRNLLSLSQDSLTAAY-MLMEDGVLLNLYEIQQLQMLCD-----KKLTPPPSIIKAP 114
QS + ++ + QD+L M + D N E Q+ + + PPP+I+
Sbjct: 327 PQSNKPVMGIVQDTLCGVRKMTLRD----NFIEYDQVMNMLYWIPNWDGVIPPPAIVSP- 381
Query: 115 SRNNSLWSGKQLFSMLLPSN-----FD-----YSFPPNGVSVSDGELTSSFESSGWLRDS 164
LW+GKQL SM +P FD S NG+ V DGE+ + +
Sbjct: 382 ---KPLWTGKQLLSMAIPKGIHLQRFDDGKNLLSPKDNGMLVVDGEIMFGVVDKKTVGAT 438
Query: 165 ECNIFQRLV-ERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEI 223
+ ++ E+ L QKV+ WL GF A + M ++
Sbjct: 439 GGGLIHTVMREKGSQVCAQLFSSIQKVVNFWLLHNGF------SIGIGDTIADSSTMRDV 492
Query: 224 SYGLQEAEQACDFNQLLVDHYCDFLSG----SLQDSDNVASIDMDSLNYEKHISAALSEV 279
+ +Q+A+ ++++D + L +L++S +E ++S L++
Sbjct: 493 TTTIQDAKDKV--QEIILDAQSNKLEPEPGMTLRES------------FEHNVSRVLNQA 538
Query: 280 SVDAFRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYR 339
A R N++ L N M +GSKG+ + + Q S C+G Q + R
Sbjct: 539 RDTAGRSAEMNLKDL--------NNVKQMVVSGSKGSFINISQMSACVGQQ---IVEGKR 587
Query: 340 MPRELSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRD 399
+P + S+P F+ S + VE+S+L GL P E F H++A R+
Sbjct: 588 IPFGFAD---------RSLPHFTKDDYSPES---KGFVENSYLRGLTPQEFFFHAMAGRE 635
Query: 400 SSFSDNADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + D+ YDG+ RN G+ +IQF Y D
Sbjct: 636 GLIDTAVKTAETGYIQRRLVKALEDIMVHYDGSTRNSLGD-IIQFVYGED 684
>C3U0B6_9EURO (tr|C3U0B6) DNA-directed RNA polymerase (Fragment) OS=Penicillium
malachiteum GN=RPB1 PE=3 SV=1
Length = 934
Score = 122 bits (306), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 116/462 (25%), Positives = 195/462 (42%), Gaps = 65/462 (14%)
Query: 6 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 65
VRV P + N SP DFDGD ++ ++PQS +R EL+EL + + +++ Q
Sbjct: 370 VRVXPFXTF-RXNXSVTSPYNADFDGDEMNLHVPQSEESRAELSELALVPKNIVSPQRNG 428
Query: 66 NLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCDK--KLTPPPSIIKAPSRNNSLWSG 123
L+ + QDSL Y L V L+ ++ + + + + PPP+I+K R W+G
Sbjct: 429 PLMGIVQDSLCGIYKLTRRDVFLSKDQVMNIMLWVPEWDGVIPPPAILKPRPR----WTG 484
Query: 124 KQLFSMLLPSNFDY------------SFPP---NGVSVSDGELTSSFESSGWLRDSECNI 168
KQ+ SM PS + F P G+ + G+L S + S +
Sbjct: 485 KQMISMAFPSGLNLLRIDKDSSPLSEKFSPLNDGGLLIHGGQLMYGMLSKKTVGASGGGV 544
Query: 169 FQRLVERFQ-DKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGL 227
+ + D+ ++ AQ+++ WL GF E + E +
Sbjct: 545 IHTIFNEYGCDQAVHFFNGAQRIVNYWLLHHGFSIGIGDTIPDRRTI--EKIEEAVRERK 602
Query: 228 QEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHM 287
QE EQ ++ + L G NV +E +S AL+ +A
Sbjct: 603 QEVEQ---ITASATENTLEALPGM-----NVRE------TFESKVSRALNNARGEAGSAT 648
Query: 288 FRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCA 347
++++ L N + M ++GSKG+ + + Q + +G Q + R+P
Sbjct: 649 EKSLKDL--------NNAIQMARSGSKGSTINISQMTAVVGQQSVEGK---RIPFGFK-- 695
Query: 348 AWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNAD 407
++P F+ S + VE+S+L GL P E F H++A R+
Sbjct: 696 -------YRTLPHFTKDDYSPES---RGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVK 745
Query: 408 LP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + R+L+ + ++ YDGTVRN G+ +IQF Y D
Sbjct: 746 TAETGYIQRKLVKALEEVMVKYDGTVRNSLGD-IIQFIYGED 786
>Q0MVT3_9EURO (tr|Q0MVT3) DNA-directed RNA polymerase (Fragment) OS=Staurothele
frustulenta GN=RPB1 PE=3 SV=1
Length = 1010
Score = 122 bits (306), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 119/463 (25%), Positives = 195/463 (42%), Gaps = 66/463 (14%)
Query: 6 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 65
VRV+P S+ +N +P DFDGD ++ ++PQS +R EL +L + +++ Q
Sbjct: 389 VRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEESRAELAQLCMVPLNIVSPQRNG 447
Query: 66 NLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCD--KKLTPPPSIIKAPSRNNSLWSG 123
L+ + QD+L Y + V L+ E+ + + + P P+I K R W+G
Sbjct: 448 PLMGIVQDTLCGIYKICRRDVFLSREEVMNIMLWVPDWDGVIPQPAIFKPRPR----WTG 503
Query: 124 KQLFSMLLPSNFDY-------SFPP---------NGVSVSDGELTSSFESSGWLRDSECN 167
KQ+ SM+LP + S PP +G+ +SDG+L + +
Sbjct: 504 KQVISMVLPPALNLVRIDGKPSQPPGERFAPAGDSGLFISDGQLMFGLFNKKSVGTGSNG 563
Query: 168 IFQRLVERFQDKT-LNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYG 226
I + F +T ++ AQ V+ WL GF E + E+
Sbjct: 564 IIHTIFNEFGHETAMSFFNGAQTVINYWLLHNGFSIGIGDTVPDVSTV--EKIKSEVDKK 621
Query: 227 LQEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRH 286
E E+ Q V + L G NV +E +SAAL+ +A
Sbjct: 622 KAEVER---ITQSAVAEDLEALPGM-----NVRE------TFESKVSAALNGARDEAGTA 667
Query: 287 MFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSC 346
+++ + N + M +AGSKG+ + + Q + +G Q + R+P
Sbjct: 668 TENSLKDI--------NNAIQMARAGSKGSTINISQMTAIVGQQSVEGK---RIPFGFK- 715
Query: 347 AAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNA 406
++P F+ K P VE+S+L GL P E F H++A R+
Sbjct: 716 --------YRTLPHFA---KDDYSAAPKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAV 764
Query: 407 DLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + ++ YDGTVR+ GN ++QF Y D
Sbjct: 765 KTAETGYIQRRLVKALEEVTVKYDGTVRDSRGN-IVQFIYGED 806
>F8QSX3_9EUKA (tr|F8QSX3) DNA-directed RNA polymerase (Fragment)
OS=Monocercomonas sp. ATCC 50210 GN=Rpb1 PE=3 SV=1
Length = 1019
Score = 122 bits (306), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 123/453 (27%), Positives = 197/453 (43%), Gaps = 76/453 (16%)
Query: 20 LC-CSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAA 78
LC +P DFDGD ++ ++PQS AR E+ ++ + Q+I+ Q+ + ++ L QD+L A
Sbjct: 408 LCDTTPYNADFDGDEMNLHVPQSQTARAEVKHIMFVPNQIISPQANKPIIGLVQDALLAC 467
Query: 79 YMLMEDGVLLNLYEIQQLQMLCDKK--LTPPPSIIKAPSRNNSLWSGKQLFSMLLPS--- 133
++ LN ++ L M K+ + PPP I+K LWSGKQ+FS+ LP
Sbjct: 468 RLMTLRDTFLNRNQVMNLMMWIKKRDVVLPPPCILKP----QQLWSGKQVFSLFLPEINH 523
Query: 134 ------NFDYSFPP---NGVSVSDGELTSSFESSGWLRDSECNIFQRLVERF-QDKTLNL 183
N D S+ P V + DG+L + + SE ++ ++ + +D +
Sbjct: 524 DAFSADNKDDSWLPVDDKRVIIRDGKLLAGILDLKTVAKSEKSLVHVVINSWDKDIARDF 583
Query: 184 LYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGLQEAEQACDFNQLLVDH 243
L Q V+ WL + GF A +E++S L + +++ D
Sbjct: 584 LNQTQLVVNNWLELRGF------SIGIIDCIASPRTLEKVSEQLGDLKKSVD-------- 629
Query: 244 YCDFLSGSLQDSDNVASIDMDSLNYEKHISAALS-----EVSVDAFRHMFRNIQSLVDKY 298
I +LN I ++ E V+ + F N V K
Sbjct: 630 ----------------EITHSALNGTLKIQPGMTLKETFESEVNTRSNDFINKSGDVVKN 673
Query: 299 ASK-GNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCAAWNSEKGLNS 357
S+ N+ + M AGSKG+ + + Q C+G Q+ + R+P N K +
Sbjct: 674 DSRFWNSLMQMVAAGSKGSKINISQILACVGQQNVEGK---RVP--------NGFKN-RT 721
Query: 358 MPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNA---DLPGTLTR 414
+P + ++ E S++ GL P E F HS+ R + D A G + R
Sbjct: 722 LPHYFKDDVGLEA---KGFCEHSYIQGLTPPEFFFHSMGGR-TGIIDTACKTSDTGYIQR 777
Query: 415 RLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
RL FM YDGT+RN N++IQF Y TD
Sbjct: 778 RLCKFMESHCVQYDGTIRNSL-NEVIQFLYGTD 809
>A5H283_9LECA (tr|A5H283) DNA-directed RNA polymerase (Fragment) OS=Platismatia
glauca GN=RPB1 PE=3 SV=1
Length = 996
Score = 122 bits (306), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 116/462 (25%), Positives = 198/462 (42%), Gaps = 61/462 (13%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M+ VRV+P S+ +N SP DFDGD ++ ++PQS R E+N+L + +++
Sbjct: 384 MMGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCMVPLNIVS 442
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCDK--KLTPPPSIIKAPSRNN 118
Q L+ + QD+L Y + V L ++ + + + P P+I+K +
Sbjct: 443 PQRNGPLMGIVQDTLCGIYKMCRRDVFLTKKQVMNILLWVPDWDGVIPQPAIVKPLA--- 499
Query: 119 SLWSGKQLFSMLLPSNFDY------SFPP---NGVSVSDGELTSSFESSGWLRDSECNIF 169
+W+GKQ+ S+++P+ + P +G+ +S GEL + + S +
Sbjct: 500 -MWTGKQILSLVIPTGLNLLRGSEEGLSPVNDDGLLISGGELMYGLLNKKSVGASGGGVI 558
Query: 170 QRLV-ERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCAR-ENMMEEISYGL 227
+ E+ + +N AQ V+ WL GF + EN + E +
Sbjct: 559 HIIFNEKGPEAAMNFFNGAQTVVNYWLLHNGFSIGIGDTIPDRHTIQQIENAVNEQKAEV 618
Query: 228 QEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHM 287
E ++ NQL D L G NV +E +S AL++ DA
Sbjct: 619 LEITRSATENQL------DSLPGM-----NVRE------TFESKVSKALNKARDDA---- 657
Query: 288 FRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCA 347
++ + N M ++GSKG+ + + Q + +G Q + R+P
Sbjct: 658 ----GTVTENSLKDFNNATQMARSGSKGSTINISQMTAVVGQQSVEGK---RIPFGFK-- 708
Query: 348 AWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNAD 407
++P F+ S + VE+S+L GL P E F H++A R+
Sbjct: 709 -------YRTLPHFTKDDYSPES---RGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVK 758
Query: 408 LP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + D+ YDGTVRN G+ ++QF Y D
Sbjct: 759 TAETGYIQRRLVKALEDVMAKYDGTVRNSLGD-IVQFVYGED 799
>A7J584_9LECA (tr|A7J584) DNA-directed RNA polymerase (Fragment)
OS=Pseudocyphellaria anomala GN=RPB1 PE=3 SV=1
Length = 997
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 115/462 (24%), Positives = 199/462 (43%), Gaps = 61/462 (13%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M+ VRV+P S+ +N SP DFDGD ++ ++PQS R E+N+L + +++
Sbjct: 371 MMGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCMVPLNIVS 429
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCDK--KLTPPPSIIKAPSRNN 118
Q L+ + QD+L Y + V L ++ + + + P P+I+K +
Sbjct: 430 PQRNGPLMGIVQDTLCGIYKICRRDVFLTKEQVMNILLWVPDWGGVLPQPAILKPRPK-- 487
Query: 119 SLWSGKQLFSMLLPSNFDYS------FPP---NGVSVSDGELTSSFESSGWLRDSECNIF 169
W+GKQ+ S+++P + S F P +G+ VS GEL + + + I
Sbjct: 488 --WTGKQIISLVVPPGLNLSRSSSEGFSPLNDDGLLVSGGELMYGLFNKKSVGATSGGII 545
Query: 170 QRLV-ERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGL- 227
+ E+ + +N AQ V+ WL GF N ++ I +
Sbjct: 546 HIIFNEKGPEAAMNFFNGAQTVVNYWLLHNGF------SIGIGDTIPDRNTIQRIENAVN 599
Query: 228 QEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHM 287
++ E + + ++ + L G NV +E +S AL++ DA
Sbjct: 600 KQKEDVAEITRSATENDLEPLPGM-----NVRE------TFESKVSKALNKARDDAGTVT 648
Query: 288 FRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCA 347
+++ L N M ++GSKG+ + + Q + +G Q + R+P
Sbjct: 649 EESLKDL--------NNATQMARSGSKGSTINISQMTAVVGQQSVEGK---RIPFGFK-- 695
Query: 348 AWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNAD 407
++P F+ S + VE+S+L GL P E F H++A R+
Sbjct: 696 -------YRTLPHFTKDDYSPES---RGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVK 745
Query: 408 LP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + D+ YDGTVRN G+ ++QF Y D
Sbjct: 746 TAETGYIQRRLVKALEDVMAKYDGTVRNSLGD-IVQFVYGED 786
>Q2PYR1_9FUNG (tr|Q2PYR1) DNA-directed RNA polymerase (Fragment) OS=Spiromyces
aspiralis GN=RPB1 PE=3 SV=1
Length = 1022
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 126/485 (25%), Positives = 203/485 (41%), Gaps = 80/485 (16%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M+ VRVLP S+ +N SP DFDGD ++ ++PQS +R E+ E+ + RQ+I+
Sbjct: 397 MMGHRVRVLPYSTF-RLNLSVTSPYNADFDGDEMNMHVPQSEESRAEIKEICMVPRQIIS 455
Query: 61 GQSGRNLLSLSQDSLTAAYMLM-EDGVLLNLYEIQQLQMLCDKKLT-PPPSIIKAPSRNN 118
Q+ ++ + QD+L A D + + L + D T P P+IIK
Sbjct: 456 PQANSPVMGIVQDTLCAIRKFTRRDNFMAKDLVMNILMHIPDWDGTVPTPAIIKP----K 511
Query: 119 SLWSGKQLFSMLLPS-----NFDYSFPPNG----------VSVSDGELTSSFESSGWLRD 163
LW+GKQ++S+ +P F + P N V + DGEL + +
Sbjct: 512 PLWTGKQIYSLAIPKGINCLRFHSTHPDNETTFVSPGDTRVIIEDGELLAGIICKKTVDA 571
Query: 164 SECNIFQ-RLVERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEE 222
SE ++ + ER + Q+++ W GF A ++ M
Sbjct: 572 SEGSLVHVVMAERGPEVAKKFFNTTQRIVDYWFLQNGF------SIGIGDTIADDDTMLN 625
Query: 223 ISYGLQEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNY----EKHISAALSE 278
+S ++EA D Q+++D D + M + Y E ++ L+
Sbjct: 626 VSNIIKEAYDRVD--QIIIDAQEDRMEA------------MPGMTYRESFENRVNKELNR 671
Query: 279 VSVDAFRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSY 338
A + LV + + N M AGSKG+ + + Q + +G Q+ +
Sbjct: 672 ARDQAGK--------LVQQRLKESNNVRQMVVAGSKGSYINVSQMTAAVGQQNVEGK--- 720
Query: 339 RMPRELSCAAWNSEKGLNSMPMFSNTLKSIQCYIP--HAVVESSFLTGLNPLECFAHSVA 396
R+P ++P F+ Y P VE+S+L GL P E F H++
Sbjct: 721 RIPFGFR---------YRTLPHFAK-----DDYSPASKGFVENSYLRGLTPQEFFFHAMG 766
Query: 397 NRDSSFSDNADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTDKDSSCDS 454
R+ G + RRL+ + DL YDG+VRN G Q++QF+Y D DS
Sbjct: 767 GREGLIDTAVKTAETGYIQRRLIKALEDLMVQYDGSVRNSLG-QIVQFTYGED---GMDS 822
Query: 455 GFQEG 459
EG
Sbjct: 823 THLEG 827
>I7A0C1_9ASCO (tr|I7A0C1) DNA-directed RNA polymerase (Fragment) OS=Lipomyces
anomalus PE=3 SV=1
Length = 872
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 117/466 (25%), Positives = 203/466 (43%), Gaps = 68/466 (14%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M++ V+V+P S+ +N SP DFDGD ++ ++PQS R EL L A+ Q+++
Sbjct: 268 MMAHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELRMLCAVPLQIVS 326
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCDK--KLTPPPSIIKAPSRNN 118
QS + ++ + QDSL + + L+ ++ + + P P+I+K
Sbjct: 327 PQSNKPVMGIVQDSLCGVRKMTKRDSFLSYDQVMNILFWVPNWDGVIPQPAILKP----K 382
Query: 119 SLWSGKQLFSMLLPSN-----FD-----YSFPPNGVSVSDGELTSSFESSGWLRDSECNI 168
+ W+GKQ+ SM++P FD S NG+ + +GE+ + + +
Sbjct: 383 AYWTGKQMMSMVIPKGINMQRFDDKNTLLSVRDNGMMIENGEIMYGVVDKKTVGATSGGL 442
Query: 169 FQRLV-ERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGL 227
++ ++ T + + Q V+ WL GF A M I+ +
Sbjct: 443 IHTIMRDKGPVPTRDFIGGVQTVVNYWLLHNGF------SIGIGDTIADAKTMRNITNTI 496
Query: 228 QEAEQACDFNQLLVDHYCDFLSG----SLQDSDNVASIDMDSLNYEKHISAALSEVSVDA 283
+A++ + QL++D + L +L++S +E+ +S L++ A
Sbjct: 497 SQAKK--EVQQLILDAQANVLPAEPGMTLRES------------FEQKVSKVLNQARDTA 542
Query: 284 FRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRE 343
R SL D N M AGSKG+ + + Q S C+G Q + R+P
Sbjct: 543 GRSAE---TSLTD-----ANNVKQMVVAGSKGSFINISQMSACVGQQ---IVEGKRIPFG 591
Query: 344 LSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFS 403
S ++P F+ S + +E+S+L GL P E F H++A R+
Sbjct: 592 FS---------YRTLPHFTKDDYSPES---RGFIENSYLRGLTPQEFFFHAMAGREGIID 639
Query: 404 DNADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + D+ YD TVRN G+ ++QF Y D
Sbjct: 640 TAVKTAETGYIQRRLVKALEDVMVKYDATVRNSLGD-VVQFVYGED 684
>A1RWW5_THEPD (tr|A1RWW5) DNA-directed RNA polymerase OS=Thermofilum pendens
(strain Hrk 5) GN=Tpen_0285 PE=3 SV=1
Length = 888
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 127/469 (27%), Positives = 193/469 (41%), Gaps = 77/469 (16%)
Query: 6 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 65
V+VLP + +N L P DFDGD ++ ++PQS AR E EL+ + ++ + G
Sbjct: 439 VKVLPYKTF-RLNLLVTIPYNADFDGDEMNLHVPQSEEARAEARELMLVQEHIMTPRYGA 497
Query: 66 NLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQML---CDKKLTPPPSIIKAPSRNNSLWS 122
++ D ++ +Y+L LL+ +L + CD + P+IIK W+
Sbjct: 498 PIIGGLHDYISGSYLLTRKDALLDKKSALRLLYIGNNCDPLVE--PAIIKP----GPYWT 551
Query: 123 GKQLFSMLLPSNFDY-----SFPPNG------------VSVSDGE-LTSSFESSGWLRDS 164
GKQ+ SM LP +Y P +G V + DG+ L F+ +
Sbjct: 552 GKQIVSMFLPKGLNYVGRASVAPASGKCDEEYCENDGYVLIKDGKLLLGVFDKQAIGAEK 611
Query: 165 ECNIFQRLVERFQDKTLNLLYDAQ-KVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEI 223
+ +V F + L D KV +L M GF E+ + EI
Sbjct: 612 HGTVLHEIVREFGVEKAKELMDGMFKVFIAYLDMHGFTMGVDSVEIPREA---EDDIREI 668
Query: 224 SYGLQEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDA 283
LQEAE+ + D + SG LQ + E I L+E A
Sbjct: 669 ---LQEAEKKVE------DLIRQYESGELQPMPGKTRKE----TLEDLIMNVLAEARTRA 715
Query: 284 FRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRE 343
+ K+ N + M K G++G++L L Q + +G Q
Sbjct: 716 --------GEVTSKHLGLLNHAVIMAKTGARGSMLNLTQMAAVVGQQ------------- 754
Query: 344 LSCAAWNSEKGLN--SMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSS 401
S E+G ++P F +K + V SSF GL+P+E F H+++ R+
Sbjct: 755 -SVRGKRIERGYTGRALPHF---VKGDLSPLAKGFVYSSFRRGLSPVEFFFHAISGRE-G 809
Query: 402 FSDNA---DLPGTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
D A G + RRL M+D Y +YDGTVRN G +IQF Y D
Sbjct: 810 LVDTAVRTAQSGYMYRRLQSAMQDFYVSYDGTVRNSEG-MIIQFRYGED 857
>F0ZE84_DICPU (tr|F0ZE84) DNA-directed RNA polymerase OS=Dictyostelium purpureum
GN=DICPUDRAFT_149604 PE=3 SV=1
Length = 1755
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 120/474 (25%), Positives = 200/474 (42%), Gaps = 70/474 (14%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M+ ++V+P S+ +N SP DFDGD ++ ++PQ++ R E+ E++ + RQ+++
Sbjct: 461 MMGHRIKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQTLETRAEVIEIMMVPRQIVS 519
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLC---DKKLTPPPSIIKAPSRN 117
QS R ++ + QD+L + + + + + + M D K+ PPP+I+K
Sbjct: 520 PQSNRPVMGIVQDTLLGSRLFTKRDTFIERDLVMNILMWLPSWDGKV-PPPAILKP---- 574
Query: 118 NSLWSGKQLFSMLLPSNFDYSFP-------PNGVSVSD-------GELTSSFESSGWLRD 163
LW+GKQLFS+++P F PN S D GEL + L
Sbjct: 575 KQLWTGKQLFSLIIPDINLIRFTSTHNDKEPNECSAGDTRVIIERGELLAGILCKRSLGA 634
Query: 164 SECNIFQRLVERFQDKTLNLLYD-AQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEE 222
+ +I ++ T L D Q V+ WL GF A ME+
Sbjct: 635 ANGSIIHVVMNEHGHDTCRLFIDQTQTVVNHWLINRGF------TMGIGDTIADAQTMEK 688
Query: 223 ISYGLQEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVD 282
++ + A+ +L++ Q +V +E+ ++ L++
Sbjct: 689 VTLTISSAKNQV--KELIIKAQNKQF--ECQPGKSVME------TFEQKVNQVLNKARDT 738
Query: 283 AFRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPR 342
A S S+ N M AGSKG+ + + Q C+G Q+ + R+P
Sbjct: 739 A--------GSSAQNSLSEANNLKAMVTAGSKGSFINISQMMACVGQQNVEGK---RVPF 787
Query: 343 ELSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHA--VVESSFLTGLNPLECFAHSVANRDS 400
++P F+ Y P + VE+S+L GL P E F H++ R+
Sbjct: 788 GFQS---------RTLPHFTK-----DDYGPESRGFVENSYLRGLTPQEFFFHAMGGREG 833
Query: 401 SFSDNADL--PGTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTDKDSSC 452
G + RRL+ M D+ YD TVRN G+ +IQF+Y D C
Sbjct: 834 LIDTAVKTSETGYIQRRLVKAMEDVSIKYDATVRNSLGD-VIQFAYGEDGIDGC 886
>I7AB12_MILFA (tr|I7AB12) DNA-directed RNA polymerase (Fragment) OS=Millerozyma
farinosa PE=3 SV=1
Length = 872
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 118/466 (25%), Positives = 204/466 (43%), Gaps = 68/466 (14%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M+S V+V+P S+ +N SP DFDGD ++ ++PQS R EL+E+ A+ Q+++
Sbjct: 268 MMSHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSPETRAELSEICAVPLQIVS 326
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCD--KKLTPPPSIIKAPSRNN 118
QS + ++ + QD+L L + ++ + + PPP+I+K
Sbjct: 327 PQSNKPVMGIVQDTLCGVRKLTLRDTFIEYDQVMNMLYWIPVWDGVIPPPAIVKP----K 382
Query: 119 SLWSGKQLFSMLLPSN-----FD-----YSFPPNGVSVSDGELTSSFESSGWLRDSECNI 168
LW+GKQL SM +P FD S +G+ + DGE+ + + +
Sbjct: 383 PLWTGKQLLSMAIPKGIHLQRFDDGKNLLSPKDSGMLIVDGEIMFGVVDKKTVGSTGGGL 442
Query: 169 FQRLV-ERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGL 227
++ E+ L QKV+ WL GF A + M+ ++ +
Sbjct: 443 IHTVMREKGPQVCAQLFGSIQKVVNYWLLHNGF------SIGIGDTIADASTMKNVTTTI 496
Query: 228 QEAEQACDFNQLLVDHYCDFLSG----SLQDSDNVASIDMDSLNYEKHISAALSEVSVDA 283
++A++ +++ D + L +L++S +E ++S L++ A
Sbjct: 497 EDAKRKV--QEIINDAQQNKLDPEPGMTLRES------------FEHNVSRVLNQARDTA 542
Query: 284 FRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRE 343
R N++ L N M +GSKG+ + + Q S C+G Q + R+P
Sbjct: 543 GRSAEMNLKDL--------NNVKQMVVSGSKGSFINISQMSACVGQQ---IVEGKRIPFG 591
Query: 344 LSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFS 403
+ ++P F+ S + VE+S+L GL P E F H++A R+
Sbjct: 592 FAD---------RTLPHFTKDDYSPES---KGFVENSYLRGLTPQEFFFHAMAGREGLID 639
Query: 404 DNADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + D+ YDGT RN G+ +IQF Y D
Sbjct: 640 TAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGD-IIQFIYGED 684
>C0SE75_PARBP (tr|C0SE75) DNA-directed RNA polymerase OS=Paracoccidioides
brasiliensis (strain Pb03) GN=PABG_05980 PE=3 SV=1
Length = 2106
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 119/468 (25%), Positives = 200/468 (42%), Gaps = 67/468 (14%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M++ VRV+P S+ +N +P DFDGD ++ ++PQS AR EL++L + Q+++
Sbjct: 473 MMAHRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEEARAELSQLCMVPLQIVS 531
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCD--KKLTPPPSIIKAPSRNN 118
Q L+ + QD+L Y + V L+ ++ + + + P P+I+K R
Sbjct: 532 PQRNGPLMGIVQDTLCGIYKICRRDVFLSKEQVMNILLWVPDWDGVIPQPAILKPRPR-- 589
Query: 119 SLWSGKQLFSMLLPSNFD--------------YSFPPN-GVSVSDGELTSSFESSGWLRD 163
W+GKQL SM+LP + +S P + GV V GEL S +
Sbjct: 590 --WTGKQLISMVLPPGLNLLRVDRDRAPRSEKFSPPADGGVLVHGGELMYGMFSKKTVGA 647
Query: 164 SECNIFQRLVERFQDKT-LNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCAR-ENMME 221
+ I + + +T +N AQ V+ WL GF + EN +
Sbjct: 648 TGGGIIHTIFNEYGPETAMNFFNGAQTVVNYWLLHHGFSIGIGDTIPDLPTIQKIENAVR 707
Query: 222 EISYGLQEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSV 281
E+ D D+ + L G NV +E +S AL+
Sbjct: 708 ------VRKEEVDDITASATDNTLEPLPGM-----NVRE------TFESKVSRALNNARD 750
Query: 282 DAFRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMP 341
+A ++ + L N + M ++GSKG+++ + Q + +G Q + R+P
Sbjct: 751 EAGTETEKSFKDL--------NNAVQMARSGSKGSIINISQMTAVVGQQSVEGK---RIP 799
Query: 342 RELSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSS 401
++P F+ S + VE+S+L GL P E F H++A R+
Sbjct: 800 FGFK---------YRTLPHFTKDDYSPES---RGFVENSYLRGLTPTEFFFHAMAGREGL 847
Query: 402 FSDNADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + R+L+ + ++ YDGTVRN G+ ++QF Y D
Sbjct: 848 IDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGD-VVQFLYGED 894
>G8XZU9_PICSO (tr|G8XZU9) DNA-directed RNA polymerase OS=Pichia sorbitophila
(strain ATCC MYA-4447 / BCRC 22081 / CBS 7064 / NBRC
10061 / NRRL Y-12695) GN=Piso0_005751 PE=3 SV=1
Length = 1758
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 117/466 (25%), Positives = 204/466 (43%), Gaps = 68/466 (14%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M+S V+V+P S+ +N SP DFDGD ++ ++PQS R EL+E+ A+ Q+++
Sbjct: 460 MMSHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSPETRAELSEICAVPLQIVS 518
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCD--KKLTPPPSIIKAPSRNN 118
QS + ++ + QD+L + + ++ + + PPP+I+K
Sbjct: 519 PQSNKPVMGIVQDTLCGVRKMTLRDTFIEYDQVMNMLYWIPVWDGVIPPPAIVKP----K 574
Query: 119 SLWSGKQLFSMLLPSN-----FD-----YSFPPNGVSVSDGELTSSFESSGWLRDSECNI 168
LW+GKQL SM +P FD S +G+ + DGE+ + + +
Sbjct: 575 PLWTGKQLLSMAIPKGIHLQRFDDGKNLLSPKDSGMLIVDGEIMFGVVDKKTVGSTGGGL 634
Query: 169 FQRLV-ERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGL 227
++ E+ L QKV+ WL GF A + M+ ++ +
Sbjct: 635 IHTVMREKGPQVCAQLFGSIQKVVNYWLLHNGF------SIGIGDTIADASTMKNVTTTI 688
Query: 228 QEAEQACDFNQLLVDHYCDFLSG----SLQDSDNVASIDMDSLNYEKHISAALSEVSVDA 283
++A++ +++ D + L +L++S +E ++S L++ A
Sbjct: 689 EDAKRKV--QEIINDAQQNKLDPEPGMTLRES------------FEHNVSRVLNQARDTA 734
Query: 284 FRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRE 343
R N++ L N M +GSKG+ + + Q S C+G Q + R+P
Sbjct: 735 GRSAEMNLKDL--------NNVKQMVVSGSKGSFINISQMSACVGQQ---IVEGKRIPFG 783
Query: 344 LSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFS 403
+ ++P F+ S + VE+S+L GL P E F H++A R+
Sbjct: 784 FAD---------RTLPHFTKDDYSPES---KGFVENSYLRGLTPQEFFFHAMAGREGLID 831
Query: 404 DNADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + D+ YDGT RN G+ +IQF Y D
Sbjct: 832 TAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGD-IIQFIYGED 876
>G5CDC2_9ASCO (tr|G5CDC2) DNA-directed RNA polymerase (Fragment) OS=Lecophagus
sp. ATCC 56071 GN=RPB1 PE=3 SV=1
Length = 1000
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 116/459 (25%), Positives = 198/459 (43%), Gaps = 57/459 (12%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M+ +RVLP S+ ++ SP DFDGD ++ ++PQS R E+++L + Q+++
Sbjct: 386 MMGHRIRVLPYSTF-RLHLSVTSPYNADFDGDEMNLHVPQSEETRAEVSQLCMVPLQIVS 444
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCD--KKLTPPPSIIKAPSRNN 118
Q L+ + QD+L Y + V L+ + + + + PPP+IIK +R
Sbjct: 445 PQRNGPLMGIVQDTLCGVYKMTRRDVFLDRNAVMNILLWVPGWDGVIPPPAIIKPRAR-- 502
Query: 119 SLWSGKQLFSMLLPSNFDY----SFPP---NGVSVSDGELTSSFESSGWLRDSECNIFQR 171
W+GKQ+ S+++P N + PP +G+ VS+GEL S + S+ +
Sbjct: 503 --WTGKQVISLIIPPNINLVKTSDMPPLTDDGLWVSNGELLFGLLSKKVVGASQGGLIHI 560
Query: 172 LVERFQDKT-LNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGLQEA 230
+ KT + Q V WL GF R + E + E
Sbjct: 561 IYNEKGSKTCMGFFNGCQLVTNYWLLHNGFSIGIGDTIPDAKTVKR--IQEIVDAKKAEV 618
Query: 231 EQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHMFRN 290
E+ Q ++ + L G N+ +E +S +L+ +A ++
Sbjct: 619 EEVTRKAQ---ENTLEALPGM-----NIRE------TFENKVSKSLNGARDEAGSATEKS 664
Query: 291 IQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCAAWN 350
++ L N + M ++GSKG+ + + Q S +G Q + R+P
Sbjct: 665 LKDL--------NNAIQMARSGSKGSNINISQMSAVVGQQSVEGK---RIPFGFK----- 708
Query: 351 SEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNADLP- 409
++P F+ S + VE+S+L GL P E F H++A R+
Sbjct: 709 ----YRTLPHFTKDDYSAES---RGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAE 761
Query: 410 -GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + D+ YDGTVRN G+ ++ F Y D
Sbjct: 762 TGYIQRRLVKALEDVMAKYDGTVRNSLGD-IVTFCYGED 799
>Q6CL79_KLULA (tr|Q6CL79) DNA-directed RNA polymerase OS=Kluyveromyces lactis
(strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
NRRL Y-1140 / WM37) GN=KLLA0F05071g PE=3 SV=1
Length = 1720
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 122/467 (26%), Positives = 202/467 (43%), Gaps = 70/467 (14%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M++ V+V+P S+ +N SP DFDGD ++ ++PQS R EL++L A+ Q+++
Sbjct: 455 MMAHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVS 513
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEI-QQLQMLCD-KKLTPPPSIIKAPSRNN 118
QS + + + QD+L + + L ++ L + D + P P+I+K
Sbjct: 514 PQSNKPCMGIVQDTLCGIRKMTLRDTFIELDQVLNMLYWIPDWDGIIPTPAILKPVP--- 570
Query: 119 SLWSGKQLFSMLLPSN-----FD-----YSFPPNGVSVSDGELTSSFESSGWLRDSECNI 168
LWSGKQ+ SM +P+ FD S NG+ + DG++ + S +
Sbjct: 571 -LWSGKQVLSMAIPNGIHLQRFDDGTTFLSPKDNGMLIIDGKIIFGVVDKKTVGSSSGGL 629
Query: 169 FQRLV-ERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGL 227
+ E+ + L + QKV+ WL GF A E M EI+ +
Sbjct: 630 IHVVTREKGPEICARLFSNIQKVVNYWLLHNGFSIGIGDT------IADEKTMREITEAI 683
Query: 228 QEAEQACDFNQLLVDHYCDFLSG----SLQDSDNVASIDMDSLNYEKHISAALSEVSVDA 283
A++ + + + + L+ +L++S +E ++ L+E A
Sbjct: 684 AVAKKKVE--DVTKEAQANLLTAKHGMTLRES------------FEDNVVRYLNEARDKA 729
Query: 284 FRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQH-SLVRLSYRMPR 342
R N++ L N M AGSKG+ + + Q S C+G Q R+++
Sbjct: 730 GRSAEVNLKDL--------NNVKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIAFGFAD 781
Query: 343 ELSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSF 402
++P FS S + VE+S+L GL P E F H++ R+
Sbjct: 782 -------------RTLPHFSKDDYSPES---KGFVENSYLRGLTPQEFFFHAMGGREGLI 825
Query: 403 SDNADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + D+ YDGT RN GN +IQF Y D
Sbjct: 826 DTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGN-VIQFIYGED 871
>C5E245_LACTC (tr|C5E245) DNA-directed RNA polymerase OS=Lachancea thermotolerans
(strain ATCC 56472 / CBS 6340 / NRRL Y-8284)
GN=KLTH0H02046g PE=3 SV=1
Length = 1740
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 124/469 (26%), Positives = 195/469 (41%), Gaps = 74/469 (15%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M++ V+V+P S+ +N SP DFDGD ++ ++PQS R EL++L A+ +Q+++
Sbjct: 455 MMAHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPQQIVS 513
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEI-QQLQMLCDKKLTPPPSIIKAPSRNNS 119
QS + + + QD+L + + L ++ L + D P II P
Sbjct: 514 AQSNKPCMGIVQDTLCGVRKMTLRDTFIELDQVLNMLYWIPDWDGVIPTPIILKP---KP 570
Query: 120 LWSGKQLFSMLLPSN-----FD-----YSFPPNGVSVSDGELTSSFESSGWLRDSECNIF 169
LWSGKQ+ S+ +PS FD S NG+ + DG++ + S +
Sbjct: 571 LWSGKQILSIAIPSGIHLQRFDEGTTLLSPKDNGMLIIDGQIIFGVVDKKTVGSSSGGLI 630
Query: 170 QRLVERFQDKTLNLLY-DAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGL- 227
+ K L+ + QKV+ WL GF A E M EI+ +
Sbjct: 631 HVVTREKGPKICARLFSNLQKVVNFWLLHNGFSIGIGDT------IADEKSMREITEAII 684
Query: 228 ------QEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSV 281
+E + N L H +L++S +E + L+E
Sbjct: 685 VAKRKVEEVTKEAQANLLTAKHGM-----TLRES------------FEDSVVRYLNEARD 727
Query: 282 DAFRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQH-SLVRLSYRM 340
A R N++ L N M AGSKG+ + + Q S C+G Q R+++
Sbjct: 728 KAGRSAEVNLKDL--------NNVKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIAFGF 779
Query: 341 PRELSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDS 400
++P FS S + VE+S+L GL P E F H++ R+
Sbjct: 780 AD-------------RTLPHFSKDDYSPES---KGFVENSYLRGLTPQEFFFHAMGGREG 823
Query: 401 SFSDNADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + D+ YDGT RN GN +IQF Y D
Sbjct: 824 LIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGN-VIQFIYGED 871
>A9Q9N4_9EURO (tr|A9Q9N4) DNA-directed RNA polymerase (Fragment) OS=Placidium
lacinulatum GN=RPB1 PE=3 SV=1
Length = 989
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 118/463 (25%), Positives = 194/463 (41%), Gaps = 66/463 (14%)
Query: 6 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 65
VRV+P S+ +N +P DFDGD ++ ++PQS +R EL++L + +++ Q
Sbjct: 379 VRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEESRAELSQLCMVPLNIVSPQRNG 437
Query: 66 NLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCD--KKLTPPPSIIKAPSRNNSLWSG 123
L+ + QD+L Y + V L+ E+ + + + P P+I+K R W+G
Sbjct: 438 PLMGIVQDTLCGIYKICRRDVFLSREEVMNIMLWVPDWDGVIPQPAIVKPRPR----WTG 493
Query: 124 KQLFSMLLPSNFDY-------SFPP---------NGVSVSDGELTSSFESSGWLRDSECN 167
KQ+ SM+LP + S PP +G+ V+DG+L + +
Sbjct: 494 KQMVSMVLPPALNLVRIDGKASLPPGERFAPAGDSGLFVADGQLMFGLFNKKSVGTGSNG 553
Query: 168 IFQRLVERFQDKTLNLLYD-AQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYG 226
+ + F +T ++ AQ V+ WL GF E + E+
Sbjct: 554 VIHTIFNEFGHETAMAFFNGAQTVINYWLLHNGFSIGIGDTVPDVGTV--EKIKSEVDKK 611
Query: 227 LQEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRH 286
E E+ Q V + L G NV +E +SAAL+ +A
Sbjct: 612 KAEVER---ITQSAVAEDLEALPGM-----NVRE------TFESKVSAALNGARDEA--- 654
Query: 287 MFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSC 346
S + N + M +AGSKG+ + + Q + +G Q + R+P
Sbjct: 655 -----GSATENSLKDSNNAIQMARAGSKGSTINISQMTAIVGQQSVEGK---RIPFGFK- 705
Query: 347 AAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNA 406
++P F+ K VE+S+L GL P E F H++A R+
Sbjct: 706 --------YRTLPHFA---KDDYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAV 754
Query: 407 DLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + ++ YDGTVR+ GN ++QF Y D
Sbjct: 755 KTAETGYIQRRLVKALEEVTVKYDGTVRDSRGN-IVQFIYGED 796
>Q0PQ13_9LECA (tr|Q0PQ13) DNA-directed RNA polymerase (Fragment) OS=Canoparmelia
caroliniana GN=RPB1 PE=3 SV=1
Length = 1016
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 113/468 (24%), Positives = 201/468 (42%), Gaps = 73/468 (15%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M+ VRV+P S+ +N SP DFDGD ++ ++PQS R E+N+L + +++
Sbjct: 390 MMGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCMVPLNIVS 448
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCD--KKLTPPPSIIKAPSRNN 118
Q L+ + QD+L Y + V L ++ + + + P P+I+K
Sbjct: 449 PQRNGPLMGIVQDTLCGIYKMCRRDVFLTKEQVMNILLWVPDWDGVIPQPAIVKPL---- 504
Query: 119 SLWSGKQLFSMLLPSNFDY------SFPP---NGVSVSDGELTSSFESSGWLRDSECNIF 169
++W+GKQ+ S+++P+ + F P +G+ +S GEL + + S +
Sbjct: 505 AMWTGKQILSLVIPTGLNLLRGSEEGFSPLNDDGLLISGGELMYGLLAKKTVGASGGGLI 564
Query: 170 QRLV-ERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGLQ 228
+ E+ + +N AQ V+ WL GF + +Q
Sbjct: 565 HIVFNEKGPEAAMNFFNGAQTVVNYWLLHNGFSIGIGDTIPD-------------RHTIQ 611
Query: 229 EAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSL-------NYEKHISAALSEVSV 281
+ E A + + V L+ + + +++SL +E +S AL++
Sbjct: 612 QIENAVNNQKAEV----------LEITRSATENELESLPGMNVRETFESKVSKALNKARD 661
Query: 282 DAFRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMP 341
DA ++ +K N M ++GSKG+ + + Q + +G Q + R+P
Sbjct: 662 DA--------GTVTEKSLKDLNNAPQMARSGSKGSTINISQMTAVVGQQSVEAK---RIP 710
Query: 342 RELSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSS 401
++P F+ S + VE+S+L GL P E F H++A R+
Sbjct: 711 FGFK---------YRTLPHFTKDDYSPES---KGFVENSYLRGLTPTEFFFHAMAGREGL 758
Query: 402 FSDNADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + D+ YDGTVRN G+ ++QF Y D
Sbjct: 759 IDTAVKTAETGYIQRRLVKALEDVMAKYDGTVRNSLGD-IVQFVYGED 805
>I7B560_9ASCO (tr|I7B560) DNA-directed RNA polymerase (Fragment) OS=Wickerhamia
fluorescens PE=3 SV=1
Length = 872
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 119/466 (25%), Positives = 206/466 (44%), Gaps = 68/466 (14%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M++ V+V+P S+ +N SP DFDGD ++ ++PQS R EL+++ A+ Q+++
Sbjct: 268 MMAHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSPETRSELSQICAVPLQIVS 326
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEI-QQLQMLCD-KKLTPPPSIIKAPSRNN 118
QS + ++ + QD+L + + + ++ L + D + PPP++IK
Sbjct: 327 PQSNKPVMGIVQDTLCGVRKMTLRDIFIEYDQVMNMLYWIPDWDGVIPPPAVIKP----K 382
Query: 119 SLWSGKQLFSMLLPSN-----FD-----YSFPPNGVSVSDGELTSSFESSGWLRDSECNI 168
+W+GKQL SM +P FD S G+ + DGE+ + + +
Sbjct: 383 PMWTGKQLLSMAIPKGIHLQRFDGGKDMLSPKDTGMLIVDGEIMFGVVDKKTVGATGGGL 442
Query: 169 FQRLV-ERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGL 227
++ E+ L QKV+ WL GF A + M +++ +
Sbjct: 443 IHTVMREKGPYVCAQLFSRIQKVVNYWLLHNGF------SIGIGDTIADASTMRDVTTTI 496
Query: 228 QEAEQACDFNQLLVDHYCDFLSG----SLQDSDNVASIDMDSLNYEKHISAALSEVSVDA 283
QEA+ +++++ + L +L++S +E ++S L++ A
Sbjct: 497 QEAKDKV--QEIILEAQQNTLEPEPGMTLRES------------FEHNVSRVLNQARDTA 542
Query: 284 FRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRE 343
R N++ L N M +GSKG+ + + Q S C+G Q + R+P
Sbjct: 543 GRSAEMNLKDL--------NNVKQMVVSGSKGSFINISQMSACVGQQ---IVEGKRIPFG 591
Query: 344 LSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFS 403
S S+P F+ S + VE+S+L GL P E F H++A R+
Sbjct: 592 FSD---------RSLPHFTKDDYSPES---KGFVENSYLRGLTPQEFFFHAMAGREGLID 639
Query: 404 DNADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + D+ YDGT RN G+ +IQF Y D
Sbjct: 640 TAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGD-VIQFVYGED 684
>L0PB90_PNEJ8 (tr|L0PB90) DNA-directed RNA polymerase OS=Pneumocystis jiroveci
(strain SE8) GN=PNEJI1_003014 PE=3 SV=1
Length = 1762
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 111/462 (24%), Positives = 201/462 (43%), Gaps = 60/462 (12%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M+ V+V+P S+ IN P DFDGD ++ ++PQS R E+ E+ + +Q+++
Sbjct: 459 MMGHRVKVMPYSTF-RINLSVTPPYNADFDGDEMNLHVPQSEETRAEIIEICMVPKQIVS 517
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCDK--KLTPPPSIIKAPSRNN 118
QS + ++ + QD+L L L+ ++ + + + PPP+IIK
Sbjct: 518 PQSNKPVMGIVQDTLAGVKKLTRRDNFLSKDQVMNILLWVPEWDGNMPPPAIIKP----K 573
Query: 119 SLWSGKQLFSMLLPSNFDY--------SFPPN--GVSVSDGELTSSFESSGWLRDSECNI 168
++W+GKQ+ SM++P ++ P+ G+ + +GE+ + S+ +
Sbjct: 574 AMWTGKQILSMVIPKGINFIRDDEKQTPMTPDDTGMMLENGEIIYGIVDKKTVGASQGGL 633
Query: 169 FQRLVERFQDKTLNLLYDA-QKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGL 227
++ + + ++ Q V+ WL GF A N M +I+ +
Sbjct: 634 VHTIMREKGPEVCRVFFNGIQMVVNYWLLHNGF------SIGIGDTIADANTMRDITNTI 687
Query: 228 QEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHM 287
EA+ ++++D + Q+ V ++E +S AL++ A R
Sbjct: 688 AEAK--AKVQEIILD--------AQQNRLQVEPGMTLRESFESKVSRALNQARDTAGRSA 737
Query: 288 FRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCA 347
+++ N M AGSKG+ + + Q S C+G Q + R+P
Sbjct: 738 QMSLKD--------SNNVKQMVTAGSKGSFINISQMSACVGQQ---IVEGKRIPYGFK-- 784
Query: 348 AWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNAD 407
++P F+ S + +E+S+L GL P E F H++A R+
Sbjct: 785 -------YRTLPHFTKDDYSPES---GGFIENSYLRGLTPQEFFFHAMAGREGLIDTAVK 834
Query: 408 LP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + D+ YDGTVRN G+ +IQ Y D
Sbjct: 835 TAETGYIQRRLVKALEDVMVKYDGTVRNSLGD-IIQLVYGED 875
>Q0PPZ6_9PEZI (tr|Q0PPZ6) DNA-directed RNA polymerase (Fragment) OS=Lichinella
iodopulchra GN=RPB1 PE=3 SV=1
Length = 1020
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 120/465 (25%), Positives = 204/465 (43%), Gaps = 67/465 (14%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M+ VRV+P S+ +N +P DFDGD ++ ++PQS R E+++L + +++
Sbjct: 396 MMGHRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEETRAEISQLCMVPLNIVS 454
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCDK--KLTPPPSIIKAPSRNN 118
Q L+ + QD+L Y + V L ++ + + + + P P+IIK +
Sbjct: 455 PQRNGPLMGIVQDTLVGIYKICRRDVFLTKEQVMNILLWVPEWGGVIPQPAIIKPSPK-- 512
Query: 119 SLWSGKQLFSMLLPSNFDY------SFPP---NGVSVSDGELT---SSFESSGWLRDSEC 166
W+GKQL SM +P + ++ F P +GV V GEL S +S G R+
Sbjct: 513 --WTGKQLISMAIPKDINFVRPGEEGFSPVGDDGVFVLGGELIFGQFSKKSVGATRNGLV 570
Query: 167 NIFQRLVERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYG 226
+I E+ + + AQ ++ WL GF N +++I
Sbjct: 571 HII--FNEKGWEIAMKFFNGAQTIVNYWLLHFGF------SIGIGDTIPDRNTIQQIEDA 622
Query: 227 L--QEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAF 284
+ Q+AE A + + ++ + L G NV +E +S AL+ +A
Sbjct: 623 VNKQKAEVA-EITRSATENELEPLPGM-----NVRE------TFESKVSKALNAARDEAG 670
Query: 285 RHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPREL 344
++++ L N + M ++GSKG+ + + Q + +G Q + R+P
Sbjct: 671 SATEKSLKDL--------NNAIQMARSGSKGSTINISQMTAVVGQQSVEGK---RIPFGF 719
Query: 345 SCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSD 404
++P F+ S + VE+S+L GL P E F H++A R+
Sbjct: 720 K---------YRTLPHFTKDDYSPES---RGFVENSYLRGLTPTEFFFHAMAGREGLIDT 767
Query: 405 NADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + D YDGTVRN G+ +IQF Y D
Sbjct: 768 AVKTAETGYIQRRLVKALEDAMAKYDGTVRNSLGD-IIQFVYGED 811
>A5H275_9LECA (tr|A5H275) DNA-directed RNA polymerase (Fragment) OS=Lecidea
fuscoatra GN=RPB1 PE=3 SV=1
Length = 1016
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 112/461 (24%), Positives = 201/461 (43%), Gaps = 59/461 (12%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M+ VRV+P S+ +N SP DFDGD ++ ++PQS R E+N+L + +++
Sbjct: 390 MMGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCMVPLNIVS 448
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCD--KKLTPPPSIIKAPSRNN 118
Q L+ + QD+L Y + V L ++ + + + P P+I+K +
Sbjct: 449 PQRNGPLMGIVQDTLAGIYKMCRRDVFLTKEQVMNILLWVPDWDGVIPQPAILKPRPK-- 506
Query: 119 SLWSGKQLFSMLLPSNFDYSF-------PPN--GVSVSDGELTSSFESSGWLRDSECNIF 169
W+GKQ+ S+++P + + P N G+ VS GEL S + + +
Sbjct: 507 --WTGKQIISLVVPPGLNLTRFSSEGLCPINDDGLMVSGGELMYGLFSKKSVGAASGGVI 564
Query: 170 QRLV-ERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGLQ 228
+ E+ + N AQ V+ WL GF N +++I +
Sbjct: 565 HIIFNEKGPEAATNFFNGAQTVVNHWLLHNGF------SIGIGDTIPDRNTIKQIEDAV- 617
Query: 229 EAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHMF 288
++Q D ++ S + + + + +++ +E +S AL++ DA
Sbjct: 618 -SKQKADVAEIT-------RSATENELEPLPGVNVRE-TFESKVSKALNKARDDAGTVTE 668
Query: 289 RNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCAA 348
+++ L N + M ++GSKG+ + + Q + +G Q + R+P
Sbjct: 669 ESLKDL--------NNAIQMARSGSKGSTINISQMTAVVGQQSVEGK---RIPFGFK--- 714
Query: 349 WNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNADL 408
++P F+ S + VE+S+L GL P E F H++A R+
Sbjct: 715 ------YRTLPHFTKDDYSPES---RGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKT 765
Query: 409 P--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + D+ YDGTVRN G+ ++QF Y D
Sbjct: 766 AETGYIQRRLVKALEDVMAKYDGTVRNSLGD-IVQFVYGED 805
>A5H2E7_9LECA (tr|A5H2E7) DNA-directed RNA polymerase (Fragment) OS=Masonhalea
richardsonii GN=RPB1 PE=3 SV=1
Length = 993
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 110/461 (23%), Positives = 202/461 (43%), Gaps = 59/461 (12%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M+ VRV+P S+ +N SP DFDGD ++ ++PQS R E+N+L + +++
Sbjct: 382 MMGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCMVPLNIVS 440
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCD--KKLTPPPSIIKAPSRNN 118
Q L+ + QD+L Y + V L ++ + + + P P+I+K
Sbjct: 441 PQRNGPLMGIVQDTLCGIYKMCRRDVFLTKEQVMNILLWVPDWDGVIPQPAIVKPL---- 496
Query: 119 SLWSGKQLFSMLLPSNFDY------SFPP---NGVSVSDGELTSSFESSGWLRDSECNIF 169
++W+GKQ+ S+++P+ + F P +G+ +S GEL + + S +
Sbjct: 497 AMWTGKQILSLVIPTGLNLLRGSEEGFSPLNDDGLLISGGELMYGLLNKKTVGASGGGVI 556
Query: 170 QRLV-ERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGLQ 228
+ E+ + + AQ V+ WL GF + +Q
Sbjct: 557 HIVFNEKGPEAAMTFFNGAQTVVNYWLLHNGFSIGIGDTIPD-------------RHTIQ 603
Query: 229 EAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHMF 288
+ E+A + + V S + + +++ +++ +E +S AL++ DA
Sbjct: 604 QIEKAVNLQKDEVAKITK--SATENELESLPGMNVRE-TFESKVSKALNKARDDAGTATE 660
Query: 289 RNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCAA 348
++++ L N M ++GSKG+ + + Q + +G Q + R+P
Sbjct: 661 KSLKDL--------NNATQMARSGSKGSTINISQMTAVVGQQSVEGK---RIPFGFK--- 706
Query: 349 WNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNADL 408
++P F+ S + VE+S+L GL P E F H++A R+
Sbjct: 707 ------YRTLPHFTKDDYSPES---RGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKT 757
Query: 409 P--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + D+ YDGTVRN G+ ++QF Y D
Sbjct: 758 AETGYIQRRLVKALEDVMAKYDGTVRNSLGD-IVQFVYGED 797
>E1FWN6_LOALO (tr|E1FWN6) DNA-directed RNA polymerase OS=Loa loa GN=LOAG_05313
PE=3 SV=2
Length = 1870
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 127/484 (26%), Positives = 204/484 (42%), Gaps = 95/484 (19%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M+ V++LP S+ +N +P DFDGD ++ ++PQS+ + E++E+ + RQLI
Sbjct: 461 MMGHKVKILPWSTF-RLNLSVTTPYNADFDGDEMNLHLPQSLETKAEVSEIAMVPRQLIT 519
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLC---DKKLTPPPSIIKAPSRN 117
Q+ + ++ + QD+LTA M+ + V + L + L M D K+ P P+I+K
Sbjct: 520 PQANKPVMGIVQDTLTAVRMMTKRDVFIELPRMMDLLMQMPNWDGKV-PQPAILKP---- 574
Query: 118 NSLWSGKQLFSMLLPSNFD----YSFPP----NG-----------VSVSDGELTSSFESS 158
LW+GKQ+F++++P N + +S P NG V + GEL S S
Sbjct: 575 KPLWTGKQVFTLIIPGNVNVLRTHSTHPDDEDNGPYKWISPGDTKVIIEHGELLSGIICS 634
Query: 159 GWLRDSECNIFQRLVERFQDKTLNLLYD-AQKVLCEWLSMTGFXXXXXXXXXXXXXCARE 217
+ S N+ + + Y Q V+ WL G
Sbjct: 635 RTIGRSAGNLLHVVTLELGWEVAAHFYSHIQTVVNAWLVAEGHT---------------- 678
Query: 218 NMMEEISYGLQEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALS 277
I G A+QA Y D +Q++ A +D+ + EK + L
Sbjct: 679 -----IGIGDTIADQAT---------YRD-----IQETIRKAKLDVVEV-IEKAHNDELE 718
Query: 278 EVSVDAFRHMFRNIQSLV------------DKYASKGNAFLTMFKAGSKGNLLKLVQHSM 325
+ R F N+ + + + S+ N F M AGSKG+ + + Q
Sbjct: 719 PTPGNTLRQTFENMVNRILNDARDRTGGSAQRSLSEYNNFKAMVVAGSKGSKINISQVIA 778
Query: 326 CLGLQHSLVRLSYRMPRELSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGL 385
C+G Q+ + R+P ++P F +K VE+S+L GL
Sbjct: 779 CVGQQNVEGK---RIPFGFRH---------RTLPHF---IKDDYGPESKGFVENSYLAGL 823
Query: 386 NPLECFAHSVANRDSSFSDNADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFS 443
P E F H++ R+ G + RRL+ M + +YDGTVRN G QL+Q
Sbjct: 824 TPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVSYDGTVRNSLG-QLVQLR 882
Query: 444 YDTD 447
Y D
Sbjct: 883 YGED 886
>Q0PPZ8_9LECA (tr|Q0PPZ8) DNA-directed RNA polymerase (Fragment) OS=Hypocenomyce
scalaris GN=RPB1 PE=3 SV=1
Length = 1027
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 116/462 (25%), Positives = 199/462 (43%), Gaps = 61/462 (13%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M+ VRV+P S+ +N SP DFDGD ++ ++PQS R E+++L + +++
Sbjct: 403 MMGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVSQLCMVPLNIVS 461
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCDK--KLTPPPSIIKAPSRNN 118
Q L+ + QD+L Y + V L ++ + + + P P+I+K +
Sbjct: 462 PQRNGPLMGIVQDTLCGVYKMCRRDVFLTKEQVMNILLWVPDWDGVIPQPAILKPRPK-- 519
Query: 119 SLWSGKQLFSMLLPSNFDYSFPP---------NGVSVSDGELTSSFESSGWLRDSECNIF 169
W+GKQ+ S+++P+ + P +G+ V GEL + S I
Sbjct: 520 --WTGKQIISLVIPAGLNLIRPSAEGLSPANDDGLFVHGGELMYGLFVKKTIGASGGGII 577
Query: 170 QRLV-ERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCAR-ENMMEEISYGL 227
+ E+ + +N AQ V+ WL GF + EN + +
Sbjct: 578 HIIFNEKGPEAAMNFFNGAQTVVNYWLLHNGFSIGIGDTIPDRSTIQKIENAVNK----- 632
Query: 228 QEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHM 287
Q+A+ A D Q ++ + L G NV +E +S AL++ DA
Sbjct: 633 QKADVA-DITQSATENTLESLPGM-----NVRE------TFESKVSKALNKARDDAGTAT 680
Query: 288 FRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCA 347
+++ L N + M ++GSKG+ + + Q + +G Q + R+P
Sbjct: 681 EDSLKDL--------NNAIQMARSGSKGSTINISQMTAVVGQQSVEGK---RIPFGFK-- 727
Query: 348 AWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNAD 407
++P F+ S + VE+S+L GL P E F H++A R+
Sbjct: 728 -------YRTLPHFTKDDYSPES---RGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVK 777
Query: 408 LP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + D+ YDGTVRN G+ ++QF Y D
Sbjct: 778 TAETGYIQRRLVKALEDVMAKYDGTVRNSLGD-IVQFVYGED 818
>G8Y2U0_PICSO (tr|G8Y2U0) DNA-directed RNA polymerase OS=Pichia sorbitophila
(strain ATCC MYA-4447 / BCRC 22081 / CBS 7064 / NBRC
10061 / NRRL Y-12695) GN=Piso0_005751 PE=3 SV=1
Length = 1772
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 117/466 (25%), Positives = 204/466 (43%), Gaps = 68/466 (14%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M+S V+V+P S+ +N SP DFDGD ++ ++PQS R EL+E+ A+ Q+++
Sbjct: 460 MMSHKVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSPETRAELSEICAVPLQIVS 518
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCD--KKLTPPPSIIKAPSRNN 118
QS + ++ + QD+L + + ++ + + PPP+I+K
Sbjct: 519 PQSNKPVMGIVQDTLCGIRKMTLRDTFIEYDQVMNMLYWIPVWDGVIPPPAIVKP----K 574
Query: 119 SLWSGKQLFSMLLPSN-----FD-----YSFPPNGVSVSDGELTSSFESSGWLRDSECNI 168
LW+GKQL SM +P FD S +G+ + DGE+ + + +
Sbjct: 575 PLWTGKQLLSMAIPKGIHLQRFDDGKNLLSPKDSGMLIVDGEIMFGVVDKKTVGSTGGGL 634
Query: 169 FQRLV-ERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGL 227
++ E+ L QKV+ WL GF A + M+ ++ +
Sbjct: 635 IHTVMREKGPQVCAQLFGSLQKVVNYWLLHNGF------SIGIGDTIADASTMKNVTTTI 688
Query: 228 QEAEQACDFNQLLVDHYCDFLSG----SLQDSDNVASIDMDSLNYEKHISAALSEVSVDA 283
++A++ +++ D + L +L++S +E ++S L++ A
Sbjct: 689 EDAKKKV--QEIINDAQQNKLDPEPGMTLRES------------FEHNVSRVLNQARDTA 734
Query: 284 FRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRE 343
R N++ L N M +GSKG+ + + Q S C+G Q + R+P
Sbjct: 735 GRSAEMNLKDL--------NNVKQMVVSGSKGSFINISQMSACVGQQ---IVEGKRIPFG 783
Query: 344 LSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFS 403
+ ++P F+ S + VE+S+L GL P E F H++A R+
Sbjct: 784 FAD---------RTLPHFTKDDYSPES---KGFVENSYLRGLTPQEFFFHAMAGREGLID 831
Query: 404 DNADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + D+ YDGT RN G+ +IQF Y D
Sbjct: 832 TAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGD-IIQFIYGED 876
>A5H276_9LECA (tr|A5H276) DNA-directed RNA polymerase (Fragment) OS=Cetraria
islandica GN=RPB1 PE=3 SV=1
Length = 1003
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 114/461 (24%), Positives = 204/461 (44%), Gaps = 59/461 (12%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M+ VRV+P S+ +N SP DFDGD ++ ++PQS R E+N+L + +++
Sbjct: 391 MMGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCMVPLNIVS 449
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCD--KKLTPPPSIIKAPSRNN 118
Q L+ + QD+L Y + V L ++ + + + P P+I+K
Sbjct: 450 PQRNGPLMGIVQDTLCGIYKMCRRDVFLTKEQVMNILLWVPDWDGVIPQPAIVKPL---- 505
Query: 119 SLWSGKQLFSMLLPSNFDY------SFPP---NGVSVSDGELTSSFESSGWLRDSECNIF 169
++W+GKQ+ S+++P+ + F P +G+ +S GEL + + S +
Sbjct: 506 AMWTGKQILSLVIPTGLNLLRGSEEGFSPLNDDGLLISGGELMYGLLNKKVVGASGGGVI 565
Query: 170 QRLV-ERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGLQ 228
+ E+ + ++ AQ V+ WL GF A+ +EE + LQ
Sbjct: 566 HIVFNEKGPEAAMSFFNGAQTVVNYWLLHNGFSIGIGDTIPDRNTIAQ---IEE-AVILQ 621
Query: 229 EAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHMF 288
+ E A LS + + +++ +++ +E +S AL++ DA
Sbjct: 622 KKEVA-----------AITLSATANELESLPGMNVRE-TFESKVSKALNKARDDA----- 664
Query: 289 RNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCAA 348
++ +K N M ++GSKG+ + + Q + +G Q + R+P
Sbjct: 665 ---GTVTEKSLKDLNNATQMARSGSKGSTINISQMTAVVGQQSVEGK---RIPFGFK--- 715
Query: 349 WNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNADL 408
++P F+ S + VE+S+L GL P E F H++A R+
Sbjct: 716 ------YRTLPHFTKDDYSPES---RGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKT 766
Query: 409 P--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + D+ YDGTVRN G+ ++QF Y D
Sbjct: 767 AETGYIQRRLVKALEDVMAKYDGTVRNSLGD-IVQFVYGED 806
>I7A0C5_SCHPM (tr|I7A0C5) DNA-directed RNA polymerase (Fragment)
OS=Schizosaccharomyces pombe PE=3 SV=1
Length = 868
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 114/463 (24%), Positives = 200/463 (43%), Gaps = 62/463 (13%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M+ +RV+P S+ +N SP DFDGD ++ ++PQS R E+ E+ + +Q+++
Sbjct: 268 MMGHRIRVMPYSTF-RLNLSVTSPYNADFDGDEMNMHVPQSEETRAEIQEITMVPKQIVS 326
Query: 61 GQSGRNLLSLSQDSLTAAYML-MEDGVLLNLYEIQQLQMLCD-KKLTPPPSIIKAPSRNN 118
QS + ++ + QD+L + D L + + + D + PPP I+K
Sbjct: 327 PQSNKPVMGIVQDTLAGVRKFSLRDNFLTRNAVMNIMLWVPDWDGILPPPVILKP----K 382
Query: 119 SLWSGKQLFSMLLPSNFD---------YSFPPN-GVSVSDGELTSSFESSGWLRDSECNI 168
LW+GKQ+ S+++P + S P + G+ + +GE+ + S+ +
Sbjct: 383 VLWTGKQILSLIIPKGINLIRDDDKQSLSNPTDSGMLIENGEIIYGVVDKKTVGASQGGL 442
Query: 169 FQRL-VERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGL 227
+ E+ + Q+V+ WL GF A + M+E++ +
Sbjct: 443 VHTIWKEKGPEICKGFFNGIQRVVNYWLLHNGF------SIGIGDTIADADTMKEVTRTV 496
Query: 228 QEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHM 287
+EA + ++ +QD+ + + + A +S + A +
Sbjct: 497 KEARRQ--------------VAECIQDAQHNRLKPEPGMTLRESFEAKVSRILNQARDNA 542
Query: 288 FRNIQ-SLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSC 346
R+ + SL D N M AGSKG+ + + Q S C+G Q + R+P
Sbjct: 543 GRSAEHSLKD-----SNNVKQMVAAGSKGSFINISQMSACVGQQ---IVEGKRIPFGFKY 594
Query: 347 AAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNA 406
++P F S + +E+S+L GL P E F H++A R+
Sbjct: 595 ---------RTLPHFPKDDDSPES---RGFIENSYLRGLTPQEFFFHAMAGREGLIDTAV 642
Query: 407 DLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ M D+ YDGTVRN G+ +IQF+Y D
Sbjct: 643 KTAETGYIQRRLVKAMEDVMVRYDGTVRNAMGD-IIQFAYGED 684
>G0W3I3_NAUDC (tr|G0W3I3) DNA-directed RNA polymerase OS=Naumovozyma dairenensis
(strain ATCC 10597 / BCRC 20456 / CBS 421 / NBRC 0211 /
NRRL Y-12639) GN=NDAI0A02130 PE=3 SV=1
Length = 1729
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 126/468 (26%), Positives = 202/468 (43%), Gaps = 72/468 (15%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M++ V+V+P S+ +N SP DFDGD ++ ++PQS R EL++L A+ Q+++
Sbjct: 455 MMAHRVKVIPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVS 513
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEI-QQLQMLCD-KKLTPPPSIIKAPSRNN 118
QS + + + QD+L L L E+ L + D + P P+IIK
Sbjct: 514 AQSNKPCMGIVQDTLCGIRKLTLRDTFLEFDEVLNMLYWVPDWDGVIPTPAIIKP----K 569
Query: 119 SLWSGKQLFSMLLP-----SNFD-----YSFPPNGVSVSDGELTSSFESSGWLRDSECNI 168
LWSGKQ+ S+ +P FD S NG+ V DG++ + S +
Sbjct: 570 PLWSGKQVLSIAIPRGIHLQRFDEGTTLLSPKDNGMLVVDGQIIFGVVDKKTVGSSNGGL 629
Query: 169 FQRLVERFQDKTL--NLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYG 226
+V R + T+ L + QKV+ WL GF A + ++EI+
Sbjct: 630 IH-VVTREKGPTICAKLFGNIQKVVNFWLLHNGF------STGIGDTIADGSTIKEITET 682
Query: 227 LQEAEQACDFNQLLVDHYCDFLSG----SLQDSDNVASIDMDSLNYEKHISAALSEVSVD 282
+ +A++ + + + + L+ +L++S +E ++ L+E
Sbjct: 683 IADAKRKVE--DVTKEAQSNLLTAKHGMTLRES------------FEDNVVRFLNEARDK 728
Query: 283 AFRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQH-SLVRLSYRMP 341
A R N+ L N M AGSKG+ + + Q S C+G Q R+ Y
Sbjct: 729 AGRLAEMNLNDL--------NNVKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIGYGFV 780
Query: 342 RELSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSS 401
++P FS S + VE+S+L GL P E F H++ R+
Sbjct: 781 DR-------------TLPHFSKDDYSPES---KGFVENSYLRGLTPQEFFFHAMGGREGL 824
Query: 402 FSDNADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + D+ YDGT RN GN +IQF Y D
Sbjct: 825 IDTAVKTAETGYIQRRLVKALEDIMVHYDGTARNSLGN-VIQFIYGED 871
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 101/440 (22%), Positives = 171/440 (38%), Gaps = 79/440 (17%)
Query: 463 GEPVGALSACAISEAAYSA------LGQPISLLETSPLLNLKNVLECGSRKKSGDQTVSL 516
GE VG L+A +I E A S TS + LK +L K+ TV L
Sbjct: 1061 GEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVYL 1120
Query: 517 ---FLSDKLGKQ--RYGFEYAALEVKNYLERVMFS-DIVSTVM------------IMFTP 558
+ SD+ + R E+ L+ + + D STV+ ++
Sbjct: 1121 KDDYSSDQEKAKFIRSAIEHTTLKSITVASEIYYDPDPRSTVIPEDDEIIQLHFSLLDDE 1180
Query: 559 QSSSLEIFNPWVCHFHLDKEIVARRKLTVHSVIESLYRRYESLTKESKVTFPNLKISSNR 618
SL+ +PW+ LD+ + + LT+ V E + K TF N
Sbjct: 1181 TEQSLDRQSPWLLRLELDRAAMNDKDLTMGQVGERI-----------KETFRNDLFVI-- 1227
Query: 619 KCSKEGGYASLNKEKEDVDCISVTIVESSRSSAKLEAVRDLMIPFLLGTVI-----KGFL 673
++ N EK + C +V A+ EA D M+ + T++ +G
Sbjct: 1228 -------WSEDNAEKLIIRC---RVVRPKSMDAETEAEEDHMLKKIENTMLENITLRGVE 1277
Query: 674 EIKKVDILWSNRSKVSNSYAGSSGELYLRV---TMSSDGDSGRFWGVLINHCHRI-MPMI 729
I++V ++ +R S S GE Y +V + +DG +N + +P +
Sbjct: 1278 NIERVVMMKYDRKVPSQS-----GE-YQKVPEWVLETDG---------VNLSEVMTVPGV 1322
Query: 730 DWTRSHPDNIHHFCSAYGIDAGRQYFLHSLASATTETGKSILPKHLHLVANSLSASGEFV 789
D TR + ++ GI+AGR + + G + +H+ L+ + ++ G
Sbjct: 1323 DATRIYTNSFIDITEVLGIEAGRAALYREVYNVIASDGSYVNYRHMALLVDVMTTQGALT 1382
Query: 790 GLNAKGIGRQRKHASVSSPFVQACFSNPGTSFIKAAKSGVLDDLQGCLDALAWGKCMSMG 849
+ G R A + S F + +A S LDD +G + + G+ +G
Sbjct: 1383 SITRHGFNRASTGALMRSSFEETV-----EILFEAGASAELDDCRGVSENVLLGQMAPIG 1437
Query: 850 TSGQFDIMHSEK--VEEFPE 867
T G FD+M E+ V+ PE
Sbjct: 1438 T-GAFDVMIDEESLVKYMPE 1456
>C1GHL1_PARBD (tr|C1GHL1) DNA-directed RNA polymerase OS=Paracoccidioides
brasiliensis (strain Pb18) GN=PADG_06747 PE=3 SV=1
Length = 1746
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 119/468 (25%), Positives = 200/468 (42%), Gaps = 67/468 (14%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M++ VRV+P S+ +N +P DFDGD ++ ++PQS AR EL++L + Q+++
Sbjct: 473 MMAHRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEEARAELSQLCMVPLQIVS 531
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCD--KKLTPPPSIIKAPSRNN 118
Q L+ + QD+L Y + V L+ ++ + + + P P+I+K R
Sbjct: 532 PQRNGPLMGIVQDTLCGIYKICRRDVFLSKEQVMNILLWVPDWDGVIPQPAILKPRPR-- 589
Query: 119 SLWSGKQLFSMLLPSNFD--------------YSFPPN-GVSVSDGELTSSFESSGWLRD 163
W+GKQL SM+LP + +S P + GV V GEL S +
Sbjct: 590 --WTGKQLISMVLPPGLNLLRVDRDRAPRSEKFSPPADGGVLVHGGELMYGMFSKKTVGA 647
Query: 164 SECNIFQRLVERFQDKT-LNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCAR-ENMME 221
+ I + + +T +N AQ V+ WL GF + EN +
Sbjct: 648 TGGGIIHTIFNEYGPETAMNFFNGAQTVVNYWLLHHGFSIGIGDTIPDLPTIQKIENAVR 707
Query: 222 EISYGLQEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSV 281
E+ D D+ + L G NV +E +S AL+
Sbjct: 708 ------VRKEEVDDITASATDNTLEPLPGM-----NVRE------TFESKVSRALNNARD 750
Query: 282 DAFRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMP 341
+A ++ + L N + M ++GSKG+++ + Q + +G Q + R+P
Sbjct: 751 EAGTETEKSFKDL--------NNAVQMARSGSKGSIINISQMTAVVGQQSVEGK---RIP 799
Query: 342 RELSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSS 401
++P F+ S + VE+S+L GL P E F H++A R+
Sbjct: 800 FGFK---------YRTLPHFTKDDYSPES---RGFVENSYLRGLTPTEFFFHAMAGREGL 847
Query: 402 FSDNADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + R+L+ + ++ YDGTVRN G+ ++QF Y D
Sbjct: 848 IDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGD-VVQFLYGED 894
>Q0PQ02_9LECA (tr|Q0PQ02) DNA-directed RNA polymerase (Fragment) OS=Lecanora
hybocarpa GN=RPB1 PE=3 SV=1
Length = 1016
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 114/461 (24%), Positives = 197/461 (42%), Gaps = 59/461 (12%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M+ VRV+P S+ +N SP DFDGD ++ ++PQS R E+N+L + +++
Sbjct: 390 MMGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVNQLCMVPLNIVS 448
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCD--KKLTPPPSIIKAPSRNN 118
Q L+ + QD+L Y + V L ++ + + + P P+I+K
Sbjct: 449 PQRNGPLMGIVQDTLCGIYKMCRRDVFLTKEQVMNILLWVPDWDGVIPQPAILKP----R 504
Query: 119 SLWSGKQLFSMLLPSNF------DYSFPP---NGVSVSDGELTSSFESSGWLRDSECNIF 169
+W+GKQ+ S+++P+ D F P +G+ VS GEL + + + +
Sbjct: 505 PMWTGKQILSLVIPAGLNLLRGSDEGFSPLNDDGLLVSGGELMYGLLNKKSVGATGGGVI 564
Query: 170 QRLV-ERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGLQ 228
+ E+ + +N AQ V+ WL GF RE + +
Sbjct: 565 HIIFNEKGPEAAMNFFNGAQTVVNYWLLHNGFSIGIGDTIPD-----RETIKRIQNAVTA 619
Query: 229 EAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHMF 288
+ ++ + D+ + L G NV +E +S AL+ +A R
Sbjct: 620 QKDEVDRITRSATDNELESLPGM-----NVRE------TFESKVSKALNNARDEAGRVTE 668
Query: 289 RNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCAA 348
+++ L N M ++GSKG+ + + Q + +G Q + R+P
Sbjct: 669 DSLKDL--------NNATQMARSGSKGSTINISQMTAVVGQQSVEGK---RIPFGFK--- 714
Query: 349 WNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNADL 408
++P F+ S + VE+S+L GL P E F H++A R+
Sbjct: 715 ------YRTLPHFTKDDYSPES---RGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKT 765
Query: 409 P--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + D+ YDGTVRN G+ ++QF Y D
Sbjct: 766 AETGYIQRRLVKALEDVMAKYDGTVRNSLGD-IVQFVYGED 805
>H2APV4_KAZAF (tr|H2APV4) DNA-directed RNA polymerase OS=Kazachstania africana
(strain ATCC 22294 / BCRC 22015 / CBS 2517 / CECT 1963 /
NBRC 1671 / NRRL Y-8276) GN=KAFR0B01060 PE=3 SV=1
Length = 1685
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 148/570 (25%), Positives = 246/570 (43%), Gaps = 98/570 (17%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M+S V+V+P S+ +N SP DFDGD ++ ++PQS R EL++L A+ Q+++
Sbjct: 455 MMSHRVKVVPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVS 513
Query: 61 GQSGRNLLSLSQDSLTAAYML-MEDGVLLNLYEIQQLQMLCD-KKLTPPPSIIKAPSRNN 118
QS + + + QD+L +L ++D L + + L + D + P P+I+K
Sbjct: 514 PQSNKPCMGIVQDTLCGIRILTLKDTFLEFDHVLNMLYWVPDWDGIIPTPAILKP----K 569
Query: 119 SLWSGKQLFSMLLPSN-----FD-----YSFPPNGVSVSDGELTSSFESSGWLRDSECNI 168
LW+GKQ+ S +P FD S NG+ + DG++ + S +
Sbjct: 570 PLWTGKQILSAAIPKGIHLQRFDEGTTLLSPKDNGMLIIDGQIIFGVVDKKTVGSSSGGL 629
Query: 169 FQRLVERFQDKTLNLLY-DAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGL 227
+ + + L+ + QKV+ WL GF A ++EI+ +
Sbjct: 630 IHVVTREKGPQVCSRLFGNIQKVVNFWLLHNGFSTGIGDT------IANGETIKEITETI 683
Query: 228 QEAEQACDFNQLLVDHYCDFLSG----SLQDS--DNVASIDMDSLNYEKHISAALSEVSV 281
EA++ + ++ + + L+ +L++S DNV LN + + L+EV++
Sbjct: 684 AEAKKKVE--EVTKEAQANLLTAKHGMTLRESFEDNVVRF----LNEARDKAGRLAEVNL 737
Query: 282 DAFRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQH-SLVRLSYRM 340
+ N M AGSKG+ + + Q S C+G Q R+ Y
Sbjct: 738 N------------------DTNYVKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIGYGF 779
Query: 341 PRELSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDS 400
++P FS S + VE+S+L GL P E F H++ R+
Sbjct: 780 VD-------------RTLPHFSKDDYSPES---KGFVENSYLRGLTPQEFFFHAMGGREG 823
Query: 401 SFSDNADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTDK-DSSCDSGFQ 457
G + RRL+ + D+ YDGT RN GN +IQF Y D D+S
Sbjct: 824 LIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGN-IIQFIYGEDGIDASHIEKQS 882
Query: 458 EGTVGGEPVGALSACAISEAAYSALGQPISLLETSPLLNLKNVLECGSRKKSGDQTVSLF 517
T+GG S+AA+ + I LL+ L+ ++LE GS + +GD + +
Sbjct: 883 LDTIGG-----------SDAAFEKRYR-IDLLKVENSLD-PSLLESGS-EITGDLKLQVL 928
Query: 518 LSDKLGKQRYGFEYAALEVKNYLERVMFSD 547
L + EY L R +F+D
Sbjct: 929 LDE---------EYRQLVEDRAFLRKVFTD 949
>G0SWB1_RHOG2 (tr|G0SWB1) DNA-directed RNA polymerase OS=Rhodotorula glutinis
(strain ATCC 204091 / IIP 30 / MTCC 1151) GN=RTG_00854
PE=3 SV=1
Length = 1804
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 129/503 (25%), Positives = 209/503 (41%), Gaps = 88/503 (17%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
++S V+V P + +N C+P DFDGD ++ ++PQ+ AR E +L+ + R L+
Sbjct: 825 ILSHRVKVRPWRTF-RLNECVCTPYNADFDGDEMNLHVPQTEEARTEAFQLMNIKRNLVT 883
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYE-IQQLQMLCDKKLT---PPPSIIKAPSR 116
++G +++ +QD +T Y++ N E +Q L D +L PPP+I+K P R
Sbjct: 884 PRNGEPIIAATQDFITGCYLITRRDTFFNRQEFVQMCSYLQDAELEIELPPPTILK-PER 942
Query: 117 NNSLWSGKQLFSMLLPSN----------------------FDYSFPPNGVSVSDGEL--- 151
LW+GKQ+F++L+ N FD S+ PN +SV+DG L
Sbjct: 943 ---LWTGKQVFNVLMRPNKDSPVNVNLECKNKTFGKPSTEFDMSY-PNFMSVNDGYLVVQ 998
Query: 152 -----TSSFESSGWLRDSECNIFQRLVERF-QDKTLNLLYDAQKVLCEWLSMTGFXXXXX 205
+ F+ S ++ ++F + F +D + K+ WL+ GF
Sbjct: 999 NSEIISGVFDKSTVGDGNKKSVFAVIQRDFGEDHAAKCMNRMAKLCARWLANKGFSIGIS 1058
Query: 206 XXXXXXXXCARENMMEEISYGLQEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDS 265
A ++ + +YG QA ++ + + GS +
Sbjct: 1059 DVTPGERLKAEKDDLVRRAYG-----QADEYIEKAARGKLECQPGSNLEQ---------- 1103
Query: 266 LNYEKHISAALSEVSVDAFRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSM 325
E IS LS V + + S+ NA L M GSKG+ + + Q
Sbjct: 1104 -TLESLISGDLSRVR--------DQVGEICMTELSRNNAPLIMATCGSKGSKINVSQMVA 1154
Query: 326 CLGLQHSLVRLSYRMPRELSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGL 385
C+G Q + +R+P S+P F K + V +SF +GL
Sbjct: 1155 CVGQQ---IIAGHRVPNGFQD---------RSLPHFP---KGAIDPLAKGFVSNSFYSGL 1199
Query: 386 NPLECFAHSVANRDSSFSDNADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFS 443
E H+++ R+ G + RRLM + DL YD +VRN G ++QF
Sbjct: 1200 RATEFLFHAISGREGLVDTAVKTAETGYMARRLMKALEDLSSRYDRSVRNATGG-VVQFI 1258
Query: 444 YDTDKDSSCDSGFQEGTVGGEPV 466
Y D D EG G+PV
Sbjct: 1259 YG---DDGLDPANLEGD--GKPV 1276
>B8M2Y2_TALSN (tr|B8M2Y2) DNA-directed RNA polymerase OS=Talaromyces stipitatus
(strain ATCC 10500 / CBS 375.48 / QM 6759 / NRRL 1006)
GN=TSTA_094830 PE=3 SV=1
Length = 1755
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 119/467 (25%), Positives = 195/467 (41%), Gaps = 65/467 (13%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M++ VRV+P S+ +N +P DFDGD ++ ++PQS AR EL EL + +++
Sbjct: 471 MMAHRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNMHVPQSEEARAELQELALVPLNIVS 529
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCD--KKLTPPPSIIKAPSRNN 118
Q L+ + QDSL Y + V L ++ L + + P P+I+K R
Sbjct: 530 PQRNGPLMGIVQDSLCGIYKICRRDVFLTKDQVMNLMLWVPDWDGVIPQPAILKPRPR-- 587
Query: 119 SLWSGKQLFSMLLPSNFDY------------SFPP---NGVSVSDGELTSSFESSGWLRD 163
W+GKQ+ SM+LPS + F P G+ V G+L S +
Sbjct: 588 --WTGKQIISMVLPSGLNLLRIDKDKAPLSEKFSPLADGGLLVHGGQLMYGMFSKKTVGA 645
Query: 164 SECNIFQRLVERF-QDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEE 222
S I + + D + AQ+V+ WL GF R +
Sbjct: 646 SGGGIVHTIFNEYGPDAAVTFFDGAQRVVNYWLLHNGFSIGIGDTIPDKKTIER--IEAA 703
Query: 223 ISYGLQEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVD 282
+ G E EQ Q ++ + L G N+ +E +S AL+ +
Sbjct: 704 VRAGKAEVEQIV---QSATENTLEPLPGM-----NIRE------TFESKVSRALNNAREE 749
Query: 283 AFRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPR 342
A ++++ L N + M ++GSKG+ + + Q + +G Q + R+P
Sbjct: 750 AGSETEKSLKDL--------NNAVQMARSGSKGSTINISQMTAIVGQQSVEGK---RIPF 798
Query: 343 ELSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSF 402
++P F+ S + VE+S+L GL P E + H++ R+
Sbjct: 799 GFK---------YRTLPHFTKDDYSPES---RGFVENSYLRGLTPTEFYFHAMGGREGLI 846
Query: 403 SDNADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + R+L+ + +L YDGTVRN G+ +IQF Y D
Sbjct: 847 DTAVKTAETGYIQRKLVKALEELMVKYDGTVRNSLGD-IIQFLYGED 892
>C5PAJ4_COCP7 (tr|C5PAJ4) DNA-directed RNA polymerase OS=Coccidioides posadasii
(strain C735) GN=CPC735_009320 PE=3 SV=1
Length = 1746
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 119/478 (24%), Positives = 207/478 (43%), Gaps = 68/478 (14%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M++ VRV+P S+ +N +P DFDGD ++ ++PQS AR ELN+L + +++
Sbjct: 473 MMAHRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEEARAELNQLCLVPLNIVS 531
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCDK--KLTPPPSIIKAPSRNN 118
Q L+ + QD+L Y + V L ++ + + + + P P+I+K R
Sbjct: 532 PQRNGPLMGIVQDTLCGIYKICRRDVFLTKEQVMNMMLWVPEWDGVLPQPAILKPRPR-- 589
Query: 119 SLWSGKQLFSMLLPSNFDY------------SFPP---NGVSVSDGELTSSFESSGWLRD 163
W+GKQ+ SM+LPS + F P G+ V GEL S +
Sbjct: 590 --WTGKQMISMVLPSGLNLLRVDRDKVPLAEKFSPLTDTGLLVHGGELMYGMFSKKTVGA 647
Query: 164 SECNIFQRLVERFQDKT-LNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEE 222
+ I + + + +N AQ V+ WL GF + + +
Sbjct: 648 TGGGIIHTIYNEYGPEVCMNFFNGAQTVVNYWLLHNGF------------SIGIGDTIPD 695
Query: 223 ISYGLQEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVD 282
++ +Q+ E+A + VD LS + + + + + +E +S AL+ +
Sbjct: 696 LAT-IQKIEEAVRIRKEEVDSIT--LSATENTLEPLPGMSVRE-TFESKVSRALNNARDE 751
Query: 283 AFRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPR 342
A ++++ L N + M ++GSKG+ + + Q + +G Q + R+P
Sbjct: 752 AGTETEKSLKDL--------NNAVQMARSGSKGSTINISQMTAVVGQQSVEGK---RIPF 800
Query: 343 ELSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSF 402
++P F+ S + VE+S+L GL P E F H++A R+
Sbjct: 801 GFK---------YRTLPHFTKDDYSPES---RGFVENSYLRGLTPTEFFFHAMAGREGLI 848
Query: 403 SDNADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTDKDSSCDSGFQE 458
G + R+L+ + ++ YDGTVRN G+ +IQF Y D D F E
Sbjct: 849 DTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGD-VIQFLYGED---GLDGAFIE 902
>I7B8Z2_LACTH (tr|I7B8Z2) DNA-directed RNA polymerase (Fragment) OS=Lachancea
thermotolerans PE=3 SV=1
Length = 871
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 125/471 (26%), Positives = 196/471 (41%), Gaps = 78/471 (16%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M++ V+V+P S+ +N SP DFDGD ++ ++PQS R EL++L A+ +Q+++
Sbjct: 268 MMAHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPQQIVS 326
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEI-QQLQMLCDKKLTPPPSIIKAPSRNNS 119
QS + + + QD+L + + L ++ L + D P II P
Sbjct: 327 AQSNKPCMGIVQDTLCGVRKMTLRDTFIELDQVLNMLYWIPDWDGVIPTPIILKPK---P 383
Query: 120 LWSGKQLFSMLLPSN-----FD-----YSFPPNGVSVSDGELTSSFESSGWLRDSECNIF 169
LWSGKQ+ S+ +PS FD S NG+ + DG++ + S +
Sbjct: 384 LWSGKQILSIAIPSGIHLQRFDEGTTLLSPKDNGMLIIDGQIIFGVVDKKTVGSSSGGLI 443
Query: 170 QRLVERFQDKTLNLLY-DAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGL- 227
+ K L+ + QKV+ WL GF A E M EI+ +
Sbjct: 444 HVVTREKGPKICARLFSNLQKVVNFWLLHNGFSIGIGDT------IADEKSMREITEAII 497
Query: 228 ------QEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSV 281
+E + N L H +L++S +E + L+E
Sbjct: 498 VAKRKVEEVTKEAQANLLTAKHGM-----TLRES------------FEDSVVRYLNEARD 540
Query: 282 DAFRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQH-SLVRLSYRM 340
A R N++ L N M AGSKG+ + + Q S C+G Q R+++
Sbjct: 541 KAGRSAEVNLKDL--------NNVKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIAFGF 592
Query: 341 PRELSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHA--VVESSFLTGLNPLECFAHSVANR 398
++P FS Y P + VE+S+L GL P E F H++ R
Sbjct: 593 ADR-------------TLPHFSK-----DDYSPESKGFVENSYLRGLTPQEFFFHAMGGR 634
Query: 399 DSSFSDNADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
+ G + RRL+ + D+ YDGT RN GN +IQF Y D
Sbjct: 635 EGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGN-VIQFIYGED 684
>A5H297_9LECA (tr|A5H297) DNA-directed RNA polymerase (Fragment) OS=Xanthoria
polycarpa GN=RPB1 PE=3 SV=1
Length = 1020
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 116/469 (24%), Positives = 201/469 (42%), Gaps = 69/469 (14%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M+ VRV+P S+ +N SP DFDGD ++ ++PQS R E+++L + +++
Sbjct: 390 MMGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEISQLCMVSLNIVS 448
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCD--KKLTPPPSIIKAPSRNN 118
Q ++ + QD+L Y + V+L+ ++ + + + P P+I+K R
Sbjct: 449 PQRNWPIMGIVQDTLCGIYKMCRRDVVLSEAQVMNILLWVPDWDGVIPQPAILKPQPR-- 506
Query: 119 SLWSGKQLFSMLLPSNFDYS------------FPP---NGVSVSDGELTSSFESSGWLRD 163
W+GKQ+ S++LP+ +Y F P GV V GEL +
Sbjct: 507 --WTGKQIISLILPATLNYRQIEKEKKTEKPLFSPLKDEGVMVDSGELMFGLLKKSAVGA 564
Query: 164 SECNIFQRLV-ERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEE 222
S+ I + E+ + LN AQ V+ WL GF ++
Sbjct: 565 SKQGIIHIIFNEKGPEAALNFFNGAQTVVNYWLLHNGF------SIGIGDTIPDRKTIQG 618
Query: 223 ISYGLQEAEQAC-DFNQLLVDHYCDFLSG-SLQDSDNVASIDMDSLNYEKHISAALSEVS 280
I + E + A + +L + L G S++++ +E + AAL++
Sbjct: 619 IEDAVSEQKSAVTEITRLATADQLESLPGMSIRET------------FESKVQAALNQAR 666
Query: 281 VDAFRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRM 340
+A +++ L N + M +GSKG+ + + Q + +G Q + R+
Sbjct: 667 ENAGTKTQESLKDL--------NNGVQMALSGSKGSTINISQMTAIVGQQAVEGK---RI 715
Query: 341 PRELSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDS 400
P ++P F+ S + VE+S+L GL P E F H++A R+
Sbjct: 716 PFGFK---------YRTLPHFTKDDYSPES---RGFVENSYLRGLTPTEFFFHAMAGREG 763
Query: 401 SFSDNADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + D+ YDGTVRN G+ ++QF Y D
Sbjct: 764 LIDTAVKTAETGYIQRRLVKALEDVMAKYDGTVRNSLGD-VVQFLYGED 811
>J3KB55_COCIM (tr|J3KB55) DNA-directed RNA polymerase OS=Coccidioides immitis
(strain RS) GN=CIMG_03244 PE=3 SV=1
Length = 1750
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 119/478 (24%), Positives = 207/478 (43%), Gaps = 68/478 (14%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M++ VRV+P S+ +N +P DFDGD ++ ++PQS AR ELN+L + +++
Sbjct: 473 MMAHRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEEARAELNQLCLVPLNIVS 531
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCDK--KLTPPPSIIKAPSRNN 118
Q L+ + QD+L Y + V L ++ + + + + P P+I+K R
Sbjct: 532 PQRNGPLMGIVQDTLCGIYKICRRDVFLTKEQVMNMMLWVPEWDGVLPQPAILKPRPR-- 589
Query: 119 SLWSGKQLFSMLLPSNFDY------------SFPP---NGVSVSDGELTSSFESSGWLRD 163
W+GKQ+ SM+LPS + F P G+ V GEL S +
Sbjct: 590 --WTGKQMISMVLPSGLNLLRVDRDKVPLAEKFSPLTDTGLLVHGGELMYGMFSKKTVGA 647
Query: 164 SECNIFQRLVERFQDKT-LNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEE 222
+ I + + + +N AQ V+ WL GF + + +
Sbjct: 648 TGGGIIHTIYNEYGPEVCMNFFNGAQTVVNYWLLHNGF------------SIGIGDTIPD 695
Query: 223 ISYGLQEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVD 282
++ +Q+ E+A + VD LS + + + + + +E +S AL+ +
Sbjct: 696 LAT-IQKIEEAVRIRKEEVDSIT--LSATENTLEPLPGMSVRE-TFESKVSRALNNARDE 751
Query: 283 AFRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPR 342
A ++++ L N + M ++GSKG+ + + Q + +G Q + R+P
Sbjct: 752 AGTETEKSLKDL--------NNAVQMARSGSKGSTINISQMTAVVGQQSVEGK---RIPF 800
Query: 343 ELSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSF 402
++P F+ S + VE+S+L GL P E F H++A R+
Sbjct: 801 GFK---------YRTLPHFTKDDYSPES---RGFVENSYLRGLTPTEFFFHAMAGREGLI 848
Query: 403 SDNADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTDKDSSCDSGFQE 458
G + R+L+ + ++ YDGTVRN G+ +IQF Y D D F E
Sbjct: 849 DTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGD-VIQFLYGED---GLDGAFIE 902
>E9CY52_COCPS (tr|E9CY52) DNA-directed RNA polymerase OS=Coccidioides posadasii
(strain RMSCC 757 / Silveira) GN=CPSG_02722 PE=3 SV=1
Length = 1750
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 119/478 (24%), Positives = 207/478 (43%), Gaps = 68/478 (14%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M++ VRV+P S+ +N +P DFDGD ++ ++PQS AR ELN+L + +++
Sbjct: 473 MMAHRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEEARAELNQLCLVPLNIVS 531
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCDK--KLTPPPSIIKAPSRNN 118
Q L+ + QD+L Y + V L ++ + + + + P P+I+K R
Sbjct: 532 PQRNGPLMGIVQDTLCGIYKICRRDVFLTKEQVMNMMLWVPEWDGVLPQPAILKPRPR-- 589
Query: 119 SLWSGKQLFSMLLPSNFDY------------SFPP---NGVSVSDGELTSSFESSGWLRD 163
W+GKQ+ SM+LPS + F P G+ V GEL S +
Sbjct: 590 --WTGKQMISMVLPSGLNLLRVDRDKVPLAEKFSPLTDTGLLVHGGELMYGMFSKKTVGA 647
Query: 164 SECNIFQRLVERFQDKT-LNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEE 222
+ I + + + +N AQ V+ WL GF + + +
Sbjct: 648 TGGGIIHTIYNEYGPEVCMNFFNGAQTVVNYWLLHNGF------------SIGIGDTIPD 695
Query: 223 ISYGLQEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVD 282
++ +Q+ E+A + VD LS + + + + + +E +S AL+ +
Sbjct: 696 LAT-IQKIEEAVRIRKEEVDSIT--LSATENTLEPLPGMSVRE-TFESKVSRALNNARDE 751
Query: 283 AFRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPR 342
A ++++ L N + M ++GSKG+ + + Q + +G Q + R+P
Sbjct: 752 AGTETEKSLKDL--------NNAVQMARSGSKGSTINISQMTAVVGQQSVEGK---RIPF 800
Query: 343 ELSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSF 402
++P F+ S + VE+S+L GL P E F H++A R+
Sbjct: 801 GFK---------YRTLPHFTKDDYSPES---RGFVENSYLRGLTPTEFFFHAMAGREGLI 848
Query: 403 SDNADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTDKDSSCDSGFQE 458
G + R+L+ + ++ YDGTVRN G+ +IQF Y D D F E
Sbjct: 849 DTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGD-VIQFLYGED---GLDGAFIE 902
>E5R1G4_ARTGP (tr|E5R1G4) DNA-directed RNA polymerase OS=Arthroderma gypseum
(strain ATCC MYA-4604 / CBS 118893) GN=MGYG_01527 PE=3
SV=1
Length = 1748
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 121/474 (25%), Positives = 204/474 (43%), Gaps = 68/474 (14%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M+S VRV+P S+ +N +P DFDGD ++ ++PQS AR ELN+L + +++
Sbjct: 472 MMSHRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEEARAELNQLCLVPLNIVS 530
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCD--KKLTPPPSIIKAPSRNN 118
Q L+ + QD+L Y + V L ++ L + + P P+I+K R
Sbjct: 531 PQRNGPLMGIVQDTLCGIYKICRRDVFLTKEQVMNLLLWVPDWDGVLPQPAILKPRPR-- 588
Query: 119 SLWSGKQLFSMLLPSNFDY------------SFPP---NGVSVSDGELTSSFESSGWLRD 163
WSGKQ+ SM+LPS + F P GV V GEL S +
Sbjct: 589 --WSGKQMISMVLPSGLNLLRIDKDKSPISEKFSPLADGGVLVHGGELMYGMFSKKTVGA 646
Query: 164 SECNIFQRLVERF-QDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEE 222
+ + + + D ++ AQ+V+ WL GF + + +
Sbjct: 647 TGGGVVHTIFNEYGPDTAMSFFNGAQRVVNYWLLHNGF------------SIGIGDTIPD 694
Query: 223 ISYGLQEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMD-SLNYEKHISAALSEVSV 281
++ +Q+ E A + VD ++ S ++ A M+ +E +S AL+
Sbjct: 695 LAT-IQKIENAVRVRKEEVDS----ITASATENTLEALPGMNVRETFESKVSRALNNARD 749
Query: 282 DAFRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMP 341
+A + +K N + M ++GSKG+ + + Q + +G Q + R+P
Sbjct: 750 EA--------GTATEKSLKDSNNAVQMARSGSKGSTINISQMTAVVGQQSVEGK---RIP 798
Query: 342 RELSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSS 401
++P F+ S + VE+S+L GL P E F H++A R+
Sbjct: 799 FGFK---------YRTLPHFTKDDYSPES---RGFVENSYLRGLTPTEFFFHAMAGREGL 846
Query: 402 FSDNADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTDK-DSSC 452
G + R+L+ + ++ YDGTVRN G+ ++QF Y D D C
Sbjct: 847 IDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGD-IVQFLYGEDGLDGQC 899
>D2VMG0_NAEGR (tr|D2VMG0) DNA-directed RNA polymerase OS=Naegleria gruberi
GN=NAEGRDRAFT_58671 PE=3 SV=1
Length = 1650
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 129/477 (27%), Positives = 204/477 (42%), Gaps = 80/477 (16%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M+ V+V+P S+ +N +P DFDGD ++ ++PQS+ + EL EL+ + + +I
Sbjct: 436 MMGHRVKVMPYSTF-RLNLSVVTPYNADFDGDEMNLHLPQSLQTKTELLELMMVPKNIIT 494
Query: 61 GQSGRNLLSLSQDSLTAAY------MLMEDGVLLNLYEIQQLQMLCD-KKLTPPPSIIKA 113
QS R L++L QD+L A + +E V++N L L D P P+I+K
Sbjct: 495 PQSHRPLIALVQDTLLAGSKCTRRDVYIEKDVMMNC-----LMYLQDFNGQLPVPAILKP 549
Query: 114 PSRNNSLWSGKQLFSMLLPS------------------NFDYSFPP--NGVSVSDGELTS 153
LW+GKQLFS+LLPS + D P G+ +S+GEL +
Sbjct: 550 ----KPLWTGKQLFSLLLPSIDYYGISSTHDDEVGDLKHLDDHLPEFDTGIIISNGELLT 605
Query: 154 SFESSGWLRDSECNIFQRLV-ERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXX 212
L S ++ +V ++ + L Q VL WL GF
Sbjct: 606 GILDKKSLGSSHGSLIHIIVNDKGTQEGKKFLGQCQHVLNYWLLQHGFSVGIGDTIADGE 665
Query: 213 XCARENMMEEISYGLQEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHI 272
+ +EEI + AE+ V L ++ +++ ++E+ I
Sbjct: 666 TVKK---IEEI---INNAERE-------VKKIVKQAHNGLVTAEPGRTVEQ---SFERSI 709
Query: 273 SAALSEVSVDAFRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHS 332
++ L+ DA H V K N+ +M +GSKG+ L + Q C+G Q+
Sbjct: 710 NSTLNAAREDAGMH--------VKKSLKDSNSIKSMVTSGSKGSYLNISQIIACVGQQNV 761
Query: 333 LVRLSYRMPRELSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFA 392
+ R+P ++P FS + V +S+L GL P E F
Sbjct: 762 EGK---RVPFGFKN---------RTLPHFSTDDHGPES---RGFVANSYLRGLTPQEFFF 806
Query: 393 HSVANRDSSFSDNADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
H++ R+ G + RRL+ M D+ YDGTVR+ GN +IQF Y D
Sbjct: 807 HTMGGREGLIDTAVKTAETGYIQRRLVKAMEDVKVNYDGTVRDASGN-IIQFLYGED 862
>Q5I2R7_9HOMO (tr|Q5I2R7) DNA-directed RNA polymerase (Fragment)
OS=Hygrophoropsis aurantiaca GN=RPB1 PE=3 SV=2
Length = 991
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 113/461 (24%), Positives = 199/461 (43%), Gaps = 68/461 (14%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M+S V+++P S+ +N P DFDGD ++ +IPQS R EL+++ + RQ+I+
Sbjct: 372 MMSHRVKLMPYSTF-RLNLSVTPPYNADFDGDEMNMHIPQSEETRAELSQIAWVPRQIIS 430
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCD--KKLTPPPSIIKAPSRNN 118
+ + ++ + QD+L L+ ++Q + + P P+IIK
Sbjct: 431 PHANKPVMGIVQDTLCGIRKFTLRDTFLDWNQVQNILLWVPDWDGAVPTPAIIKP----K 486
Query: 119 SLWSGKQLFSMLLPSNFDYSFPP----------NGVSVSDGELTSSFESSGWLRDSECNI 168
LW+GKQ+ S+++P + P +G+ + +GE+ + S+ +
Sbjct: 487 PLWTGKQILSLVIPRGINIHRAPDPKSSNPVFDDGMMIENGEIVFGIVEKKTVGASQGGL 546
Query: 169 FQRLV-ERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGL 227
+ E+ + T +L Q V+ WL GF A N+M I+ +
Sbjct: 547 IHVVFREKGPEATRDLFTGIQMVVNFWLFHNGF------SIGIGDAIAGPNVMSFITQEI 600
Query: 228 QEAEQACDFNQLLVDHYCDFLSG----SLQDSDNVASIDMDSLNYEKHISAALSEVSVDA 283
+ +Q ++ D Y D L ++++S +E + L+ +
Sbjct: 601 NDRKQQV--TTIIEDAYHDRLKAMPGMTIRES------------FESKVERELNRARDTS 646
Query: 284 FRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRE 343
R+ N++ + N M AGSKG+ + + Q S+C+G Q R R+P
Sbjct: 647 GRYAQENLK--------EDNNVKQMVVAGSKGSYINISQMSVCVGQQSVEGR---RIPFG 695
Query: 344 LSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFS 403
++P F+ S + VE+S+L GL P E F H++A R+
Sbjct: 696 FRH---------RTLPHFTKDDFSPEA---RGFVENSYLRGLTPQEFFFHAMAGREGLID 743
Query: 404 DNADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQF 442
G + RRL+ + D+ YDGTVRN G+ L+QF
Sbjct: 744 TAVKTAETGYIQRRLVKALEDVMVCYDGTVRNSLGD-LLQF 783
>A5H2F8_9LECA (tr|A5H2F8) DNA-directed RNA polymerase (Fragment) OS=Parmeliella
sp. AFTOL 334 GN=RPB1 PE=3 SV=1
Length = 982
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 113/462 (24%), Positives = 202/462 (43%), Gaps = 61/462 (13%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M+ VRV+P S+ +N SP DFDGD ++ ++PQS R E+N+L + +++
Sbjct: 370 MMGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCMVPLNIVS 428
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCDK--KLTPPPSIIKAPSRNN 118
Q L+ + QD+L Y + V L+ ++ + + + P P+I+K +
Sbjct: 429 PQRNGPLMGIVQDTLCGIYKICRRDVFLSKEQVMNILLWVPDWDGILPQPAILKPRPK-- 486
Query: 119 SLWSGKQLFSMLLPSNFDYS------FPP---NGVSVSDGELTSSFESSGWLRDSECNIF 169
W+GKQ+ S+++PS + + F P +G+ VS G+L + + + I
Sbjct: 487 --WTGKQIISLVIPSGLNLNRAGGEGFSPVNDDGLLVSGGKLMYGLLNKKSVGATSSGII 544
Query: 170 QRLV-ERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGL- 227
+ E+ + + AQ V+ WL GF N +++I +
Sbjct: 545 HIIFNEKGPEAAMKFFNGAQTVVNYWLLHNGFSIGIGDT------IPDRNTIQQIEDAVN 598
Query: 228 QEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHM 287
++ E + + ++ + L G NV +E +S AL++ DA
Sbjct: 599 KQKEDVAEITRSATENELEPLPGM-----NVRE------TFESKVSKALNKARDDAGTVT 647
Query: 288 FRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCA 347
++++ L N M +GSKG+ + + Q + +G Q + R+P
Sbjct: 648 EKSLKDL--------NNATQMALSGSKGSTINISQMTAVVGQQSVEGK---RIPFGFK-- 694
Query: 348 AWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNAD 407
++P F+ S + VE+S+L GL P E F H++A R+ +
Sbjct: 695 -------YRTLPHFTKDDYSPES---RGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVE 744
Query: 408 LP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + D+ YDGTVRN G+ ++QF Y D
Sbjct: 745 TAETGYIQRRLVKALEDVMAKYDGTVRNSLGD-IVQFVYGED 785
>A5H274_9LECA (tr|A5H274) DNA-directed RNA polymerase (Fragment) OS=Candelariella
reflexa GN=RPB1 PE=3 SV=1
Length = 989
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 119/462 (25%), Positives = 200/462 (43%), Gaps = 61/462 (13%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M+ VRV+P S+ +N SP DFDG ++ ++PQS R E+N+L + +++
Sbjct: 377 MMGHRVRVMPYSTF-RLNLSVTSPYNADFDGYEMNLHVPQSEETRAEVNQLCMVPLNIVS 435
Query: 61 GQSGRNLLSLSQDSLTAAY-MLMEDGVLLNLYEIQQLQMLCD-KKLTPPPSIIKAPSRNN 118
Q L+ + QD+L Y M D L + L + D + P P+IIK
Sbjct: 436 PQRNGPLMGIVQDTLCGIYNMCRRDVFLTKELXMNVLLWVPDWDGVIPQPAIIKP----K 491
Query: 119 SLWSGKQLFSMLLPSNF------DYSFPP---NGVSVSDGELTSSFESSGWLRDSECNIF 169
+W+GKQ+ S+++P+ D F P +G+ +S GEL + + S I
Sbjct: 492 PMWTGKQILSLVIPTGLNLLRSSDEGFYPINDHGLLISGGELMYGLLNKKSVGASGGGII 551
Query: 170 QRLV-ERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGL- 227
+ E+ +N AQ V+ WL GF N +++I +
Sbjct: 552 HIIYNEKGWGAAMNFFNGAQTVVNYWLLHXGFSIGIGDT------IPDRNTIQQIEDAVN 605
Query: 228 QEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHM 287
++ ++A + + ++ D L G NV +E +S AL++ DA
Sbjct: 606 KQKDEAGEITRSATENELDSLPGM-----NVRE------TFESKVSKALNKARDDA---- 650
Query: 288 FRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCA 347
++ +K N M ++GSKG+ + + Q + +G Q + R+P
Sbjct: 651 ----GTVTEKSLKDLNNATQMARSGSKGSTINISQMTAVVGQQSVEGK---RIPFGFK-- 701
Query: 348 AWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNAD 407
++P F+ S + VE+S+L GL P E F H++A R+
Sbjct: 702 -------YRTLPHFTKDDYSPES---RGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVK 751
Query: 408 LP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + D+ YDGTVRN G+ ++QF Y D
Sbjct: 752 TAETGYIQRRLVKALEDVMAKYDGTVRNSLGD-IVQFVYGED 792
>G9M7Z7_9FUNG (tr|G9M7Z7) DNA-directed RNA polymerase (Fragment) OS=Basidiobolus
haptosporus GN=RPB1 PE=3 SV=1
Length = 976
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 121/481 (25%), Positives = 193/481 (40%), Gaps = 83/481 (17%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M+ VRV+P S+ +N SP DFDGD ++ ++PQS +VE+ E+ + +Q+I+
Sbjct: 391 MMGHKVRVMPYSTF-RLNLSVTSPYNADFDGDEMNMHVPQSEETKVEIQEICMVPKQIIS 449
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCD--KKLTPPPSIIKAPSRNN 118
QS + ++ + QD+L ++ + + ML D + P+I+K
Sbjct: 450 PQSNKPVMGIVQDTLCGVRKFTNRDCFMDKALVMNILMLVDDWNGVIXTPAILKPL---- 505
Query: 119 SLWSGKQLFSMLLPSNF---------------DYSFPPNGVSVSDGELTSSF-------- 155
LW+GKQL SM++P D S V V DGEL S
Sbjct: 506 PLWTGKQLLSMVIPKGINCITYHSAHPDDEKSDISPGDTKVVVEDGELISGIVCKKTVGA 565
Query: 156 ESSGWLRDSECNIFQRLVERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCA 215
+ GW+ + ++F L Q V+ WL GF A
Sbjct: 566 SNGGWVHTIMNEHGPEIAKKF-------LCGTQAVVNYWLLQNGF------SIGIGDTIA 612
Query: 216 RENMMEEISYGLQEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAA 275
E E I+ + A+Q + + + QD A +E +S
Sbjct: 613 DEKTAEHITETIDSAKQ----------RVSEIILAAQQDKLECAPGMTIRETFESKVSRE 662
Query: 276 LSEVSVDAFRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVR 335
L+ + + R+++ + N M +GSKG+ + + Q S C+G Q +
Sbjct: 663 LNRARDHSGQSAERSLK--------EENNVKQMVVSGSKGSFVNISQMSACVGQQDVEGK 714
Query: 336 LSYRMPRELSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHA--VVESSFLTGLNPLECFAH 393
R+P ++P F+ Y P + VE+S+L L P E F H
Sbjct: 715 ---RIPFGFK---------FRTLPHFTK-----DDYGPESKGFVENSYLRRLTPQEFFFH 757
Query: 394 SVANRDSSFSDNADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTDKDSS 451
++ R+ G + RRL+ + D+ YDGTVRN GN +IQF Y D
Sbjct: 758 AMGGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGN-IIQFCYGEDGMDG 816
Query: 452 C 452
C
Sbjct: 817 C 817
>R7SAL6_TREMS (tr|R7SAL6) Uncharacterized protein OS=Tremella mesenterica (strain
ATCC 24925 / CBS 8224 / DSM 1558 / NBRC 9311 / NRRL
Y-6157 / RJB 2259-6) GN=TREMEDRAFT_72470 PE=4 SV=1
Length = 1457
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 126/489 (25%), Positives = 205/489 (41%), Gaps = 88/489 (17%)
Query: 6 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 65
VRV P + +N C+P DFDGD ++ +IPQ+ AR E EL+++ + L+ ++G
Sbjct: 489 VRVRPWRTF-RLNECVCNPYNADFDGDEMNLHIPQTEEARTEALELMSVKKNLVTPRNGE 547
Query: 66 NLLSLSQDSLTAAYMLMEDGVLLNLYEIQQL-QMLCDKKL---TPPPSIIKAPSRNNSLW 121
+++ QD +T +++L + + Q+ CD L PPP+I K P R LW
Sbjct: 548 PIIAAIQDFITGSFLLSRRDRFFSRQQFTQICSFFCDADLDIDIPPPTIWK-PQR---LW 603
Query: 122 SGKQLFSMLL---------------------PSNFDYSFPPNGVSVSDGELT-------- 152
+GKQ+F++L+ P D+ FPP+ +S +DG L
Sbjct: 604 TGKQIFNVLMKPNRRSRIKVNLEAKCRTMKDPDPKDH-FPPD-MSPNDGYLVIVNSEIMC 661
Query: 153 SSFESSGWLRDSECNIFQRLVERF-QDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXX 211
F+ + + ++F ++ + D+ + K+ WL+ GF
Sbjct: 662 GVFDKNTVGDGKKKSVFGVILRDYGPDEAAAGMNRLAKLAARWLANQGFSLGINDVIPGP 721
Query: 212 XXCARENMMEEISYGLQEAEQACDFNQLLVDHYCDFLSGSLQDS--DNVASIDMDSLNYE 269
++ E +Y YCD L + +N D D+ E
Sbjct: 722 KLHLSKDGKVEEAY-----------------KYCDDLIEKAKKGLLENAPGCDQDT-TLE 763
Query: 270 KHISAALSEVSVDAFRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGL 329
+ IS LS+V + + L + S+ NA L M GSKG+++ + Q C+G
Sbjct: 764 QQISGTLSKVRGE--------VGELCMQDLSRHNAPLIMATCGSKGSVINVAQMVACVGQ 815
Query: 330 QHSLVRLSYRMPRELSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLE 389
Q + R+P S+P F ++ V +SF TGL+P E
Sbjct: 816 Q---IISGNRIPNGFQD---------RSLPHFHKKSRNPPS---KGFVRNSFYTGLSPTE 860
Query: 390 CFAHSVANRDSSFSDNADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
H+++ R+ G + RRLM M DL YD +VRN G ++QF Y D
Sbjct: 861 FLFHAISGREGLVDTAVKTAETGYMARRLMKAMEDLSTHYDLSVRNSEGG-VVQFQYGDD 919
Query: 448 K-DSSCDSG 455
D +C G
Sbjct: 920 MLDPACLEG 928
>Q9NJK2_9MYRI (tr|Q9NJK2) DNA-directed RNA polymerase (Fragment) OS=Polyxenus
fasciculatus PE=2 SV=2
Length = 751
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 121/472 (25%), Positives = 204/472 (43%), Gaps = 71/472 (15%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M+ +RV P S+ +N +P DFDGD ++ ++PQS+ R E+ EL + RQ+I
Sbjct: 120 MMGHHIRVFPWSTF-RMNLSVTTPYNADFDGDEMNLHVPQSMETRAEIEELAIVPRQIIT 178
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQM---LCDKKLTPPPSIIKAPSRN 117
QS R ++ + QD+LTA + + V L+ ++ + M + D K+ P P+I+K
Sbjct: 179 PQSNRPVMGIVQDTLTAVRKMTKRDVFLDKDQMMNILMFLPIWDGKM-PQPAILKP---- 233
Query: 118 NSLWSGKQLFSMLLPSNFD----YSFPPNG---------------VSVSDGELTSSFESS 158
+W+GKQ+FS+++P N + +S P+ V V GEL
Sbjct: 234 KPVWTGKQVFSLIIPGNVNMIRTHSTHPDDEDDGPYKWISPGDTKVLVEHGELMCGILCK 293
Query: 159 GWLRDSECNIFQRLVERFQDKTLNLLYD-AQKVLCEWLSMTGFXXXXXXXXXXXXXCARE 217
L S ++ ++ +T L Y Q V+ WL + G A +
Sbjct: 294 KSLGTSAGSLLHIVMLELGWETAGLFYSHIQTVVNNWLLLEGH------TIGIGDTIADQ 347
Query: 218 NMMEEISYGLQEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALS 277
EI +++A+Q D +++ + D L + ++ +E ++ L+
Sbjct: 348 QTYHEIQETIRKAKQ--DVIEVIEKAHNDELEPTPGNTLRQT--------FENQVNRILN 397
Query: 278 EVSVDAFRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLS 337
+ R++ S+ N F M +G+KG+ + + Q C+G Q+ +
Sbjct: 398 DARDKTGGSAQRSL--------SEFNNFKAMVVSGAKGSKINISQVIACVGQQNVEGK-- 447
Query: 338 YRMPRELSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVAN 397
R+P ++P F +K VE+S+L GL P E F H++
Sbjct: 448 -RIPFGFRK---------RTLPHF---IKDDYGPESRGFVENSYLAGLTPSEFFFHAMGG 494
Query: 398 RDSSFSDNADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
R+ G + RRL+ M + YDGTVRN G QLIQ Y D
Sbjct: 495 REGLIDTAVKTAETGYIQRRLIKAMESVMVTYDGTVRNSVG-QLIQLRYGED 545
>A1YIA6_TRIRU (tr|A1YIA6) DNA-directed RNA polymerase (Fragment) OS=Trichophyton
rubrum GN=RPB1 PE=3 SV=1
Length = 1015
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 124/474 (26%), Positives = 200/474 (42%), Gaps = 68/474 (14%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M+S VRV+P S+ +N +P DFDGD ++ ++PQS AR ELN+L + +++
Sbjct: 388 MMSHRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEEARAELNQLCLVPLNIVS 446
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCD--KKLTPPPSIIKAPSRNN 118
Q L+ + QD+L Y + V L ++ + + + P P+I+K R
Sbjct: 447 PQRNGPLMGIVQDTLCGIYKICRRDVFLTKEQVMNVLLWVPDWDGVLPQPAILKPRPR-- 504
Query: 119 SLWSGKQLFSMLLPSNFDY------------SFPP---NGVSVSDGELTSSFESSGWLRD 163
WSGKQ+ SM+LPS + F P GV V GEL S +
Sbjct: 505 --WSGKQMISMVLPSGLNLLRIDKDKSPISEKFSPLADGGVLVHGGELMYGMFSKKTVGA 562
Query: 164 SECNIFQRLVERF-QDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEE 222
S I + + D ++ AQ V+ WL GF +E
Sbjct: 563 SGGGIVHTIFNEYGPDAAMSFFNGAQAVVNYWLLHNGFSIGIGDTIPD---------LET 613
Query: 223 ISYGLQEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMD-SLNYEKHISAALSEVSV 281
I Q+ E A + VD ++ S ++ A M+ +E +S AL+
Sbjct: 614 I----QKIENAVRVRKEEVDS----ITASATENTLEALPGMNVRETFESKVSRALNNARD 665
Query: 282 DAFRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMP 341
+A + +K N + M ++GSKG+ + + Q + +G Q + R+P
Sbjct: 666 EA--------GTATEKSLKDSNNAVQMARSGSKGSTINISQMTAVVGQQSVEGK---RIP 714
Query: 342 RELSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSS 401
++P F+ S + VE+S+L GL P E F H++A R+
Sbjct: 715 FGFK---------YRTLPHFTKDDYSPES---RGFVENSYLRGLTPTEFFFHAMAGREGL 762
Query: 402 FSDNADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTDK-DSSC 452
G + R+L+ + ++ YDGTVRN G+ ++QF Y D D C
Sbjct: 763 IDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGD-IVQFLYGEDGLDGQC 815
>I7B966_9ASCO (tr|I7B966) DNA-directed RNA polymerase (Fragment) OS=Sugiyamaella
smithiae PE=3 SV=1
Length = 868
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 118/467 (25%), Positives = 206/467 (44%), Gaps = 70/467 (14%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M++ V+V+P SS +N SP DFDGD ++ ++PQS R EL++L A+ Q+++
Sbjct: 268 MMAHRVKVMPYSSF-RMNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVS 326
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLC---DKKLTPPPSIIKAPSRN 117
QS + ++ + QD+L + + ++ ++ + D ++ PPP+I K
Sbjct: 327 PQSNKPVMGIVQDTLCGIRKMSKRDSFIDYEQVMNILFWVPNWDGRI-PPPAIWKP---- 381
Query: 118 NSLWSGKQLFSMLLPSN-----FDYSFP-----PNGVSVSDGELTSSFESSGWLRDSECN 167
+W+GKQ+ S+ +P FD P NG+ +S GE+ + +
Sbjct: 382 KPMWTGKQMVSLCIPDGIFLQRFDDGNPLISPKDNGMLISRGEIIYGVVDKKTVGATGGG 441
Query: 168 IFQRLV-ERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYG 226
+ ++ E+ + QKV+ WL GF A + M +I+
Sbjct: 442 LIHTIMREKGPKVAAGFFGNIQKVVNYWLLHNGF------SIGIGDTIADGSTMRDIANT 495
Query: 227 LQEAEQACDFNQLLVDHYCDFLSG----SLQDSDNVASIDMDSLNYEKHISAALSEVSVD 282
+ EA+Q ++ D + LS +L++S +E ++S L++ +
Sbjct: 496 IAEAKQKV--QDIIADAQNNTLSPEPGMTLRES------------FEHNVSRVLNQARDN 541
Query: 283 AFRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPR 342
A R +++ L N M +GSKG+ + + Q C+G Q + R+P
Sbjct: 542 AGRSAELSLKDL--------NNVKQMVVSGSKGSFINISQMMACVGQQ---IVEGKRIPF 590
Query: 343 ELSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSF 402
+ S+P F+ S + VE+S+L GL P E F H++A R+
Sbjct: 591 GFAD---------RSLPHFTKDDYSPES---KGFVENSYLRGLTPQEFFFHAMAGREGLI 638
Query: 403 SDNADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + D+ YDGT RN G+ +IQF Y D
Sbjct: 639 DTAVKTAETGYIQRRLVKALEDIMVQYDGTTRNSLGD-VIQFIYGED 684
>I7B543_9SACH (tr|I7B543) DNA-directed RNA polymerase (Fragment) OS=Naumovozyma
dairenensis PE=3 SV=1
Length = 871
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 126/468 (26%), Positives = 202/468 (43%), Gaps = 72/468 (15%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M++ V+V+P S+ +N SP DFDGD ++ ++PQS R EL++L A+ Q+++
Sbjct: 268 MMAHRVKVIPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVS 326
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEI-QQLQMLCD-KKLTPPPSIIKAPSRNN 118
QS + + + QD+L L L E+ L + D + P P+IIK
Sbjct: 327 AQSNKPCMGIVQDTLCGIRKLTLRDTFLEFDEVLNMLYWVPDWDGVIPTPAIIKP----K 382
Query: 119 SLWSGKQLFSMLLP-----SNFD-----YSFPPNGVSVSDGELTSSFESSGWLRDSECNI 168
LWSGKQ+ S+ +P FD S NG+ V DG++ + S +
Sbjct: 383 PLWSGKQVLSIAIPRGIHLQRFDEGTTLLSPKDNGMLVVDGQIIFGVVDKKTVGSSNGGL 442
Query: 169 FQRLVERFQDKTL--NLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYG 226
+V R + T+ L + QKV+ WL GF A + ++EI+
Sbjct: 443 IH-VVTREKGPTICAKLFGNIQKVVNFWLLHNGF------STGIGDTIADGSTIKEITET 495
Query: 227 LQEAEQACDFNQLLVDHYCDFLSG----SLQDSDNVASIDMDSLNYEKHISAALSEVSVD 282
+ +A++ + + + + L+ +L++S +E ++ L+E
Sbjct: 496 IADAKRKVE--DVTKEAQSNLLTAKHGMTLRES------------FEDNVVRFLNEARDK 541
Query: 283 AFRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQH-SLVRLSYRMP 341
A R N+ L N M AGSKG+ + + Q S C+G Q R+ Y
Sbjct: 542 AGRLAEMNLNDL--------NNVKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIGYGFV 593
Query: 342 RELSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSS 401
++P FS S + VE+S+L GL P E F H++ R+
Sbjct: 594 DR-------------TLPHFSKDDYSPES---KGFVENSYLRGLTPQEFFFHAMGGREGL 637
Query: 402 FSDNADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + D+ YDGT RN GN +IQF Y D
Sbjct: 638 IDTAVKTAETGYIQRRLVKALEDIMVHYDGTARNSLGN-VIQFIYGED 684
>I7B5C3_9ASCO (tr|I7B5C3) DNA-directed RNA polymerase (Fragment) OS=Nadsonia
fulvescens PE=3 SV=1
Length = 872
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 120/470 (25%), Positives = 206/470 (43%), Gaps = 76/470 (16%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M++ VRV+P S+ +N SP DFDGD ++ ++PQS R EL++L + Q+++
Sbjct: 268 MMAHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCMVPLQIVS 326
Query: 61 GQSGRNLLSLSQDSLTAAY-MLMEDGVLLNLYEIQQLQMLCD-----KKLTPPPSIIKAP 114
QS + ++ + QD+L M + D + + +Q+ +C + P P+I+K
Sbjct: 327 PQSNKPVMGIVQDTLCGIRKMTLRDTFI----DYEQVMNICFWVPGWDGVVPHPAILKP- 381
Query: 115 SRNNSLWSGKQLFSMLLPSN-----FDYSFP-----PNGVSVSDGELTSSFESSGWLRDS 164
LW+GKQ+ S+ +P FD S P NG+ + DG++ + +
Sbjct: 382 ---KPLWTGKQMASLCIPKGIHLQRFDDSNPIISPKDNGMYIVDGQIIYGVVDKKTIGAT 438
Query: 165 ECNIFQRLV-ERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEI 223
+ ++ E+ N QK + WL GF A M +I
Sbjct: 439 GGGLVHTIMREKGSQICCNFFGSIQKTVNFWLLHNGF------SIGIGDTIADAGTMRDI 492
Query: 224 SYGLQEAEQACDFNQLLVDHYCDFLSG----SLQDSDNVASIDMDSLNYEKHISAALSEV 279
+ + EA+Q +++ D + LS +L++S +E ++S L++
Sbjct: 493 TNTIAEAKQKV--QEIINDAQANTLSPEPGMTLRES------------FEHNVSRVLNQA 538
Query: 280 SVDAFRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYR 339
A R +++ L N M +GSKG+ + + Q S C+G Q + R
Sbjct: 539 RDTAGRSAEMSLKDL--------NNVKQMVVSGSKGSFINISQMSACVGQQ---IVEGKR 587
Query: 340 MPRELSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRD 399
+P S ++P F+ S + +E+S+L GL P E F H++A R+
Sbjct: 588 IPYGFSD---------RTLPHFTKDDYSPES---KGFIENSYLRGLTPQEFFFHAMAGRE 635
Query: 400 SSFSDNADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + D+ YDGT RN G+ +IQF Y D
Sbjct: 636 GLIDTAVKTAETGYIQRRLVKALEDVMVQYDGTTRNSLGD-IIQFVYGED 684
>I7B961_9ASCO (tr|I7B961) DNA-directed RNA polymerase (Fragment) OS=Candida
petrohuensis PE=3 SV=1
Length = 868
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 116/466 (24%), Positives = 203/466 (43%), Gaps = 68/466 (14%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M++ VRV+P S+ +N SP DFDGD ++ ++PQS R EL++L + Q+I+
Sbjct: 268 MMAHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCMVPLQIIS 326
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCD--KKLTPPPSIIKAPSRNN 118
QS + ++ + QD+L L + + ++ L + P P+++K
Sbjct: 327 PQSNKPVMGIVQDTLCGIRKLTKRDTFVEFDQVMNLLFWIPDWDGVVPQPAVLKP----K 382
Query: 119 SLWSGKQLFSMLLPSN-----FDYSFP-----PNGVSVSDGELTSSFESSGWLRDSECNI 168
LW+GKQ+ S+ +P FD P NG+ ++ GE+ + + +
Sbjct: 383 PLWTGKQIVSLCIPKGIFMQRFDDQNPITSPKDNGMLIAKGEVIYGVVDKKTVGATAGGL 442
Query: 169 FQRLV-ERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGL 227
++ E+ N + QKV+ WL GF A M++I+ +
Sbjct: 443 IHTIMREKGPQICCNFFGNLQKVVNYWLLHNGF------SIGIGDTIADAATMKDITNTI 496
Query: 228 QEAEQACDFNQLLVDHYCDFLSG----SLQDSDNVASIDMDSLNYEKHISAALSEVSVDA 283
EA+ +++++ + L+ +L++S +E ++S L++ A
Sbjct: 497 AEAKNKV--QEIILEAQANKLAPEPGMTLRES------------FEHNVSRVLNQARDTA 542
Query: 284 FRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRE 343
R +++ L N M AGSKG+ + + Q S C+G Q + R+P
Sbjct: 543 GRSAEMSLKEL--------NNVKQMVIAGSKGSFINISQMSACVGQQ---IVEGKRIPFG 591
Query: 344 LSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFS 403
S+P F+ S + +E+S+L GL P E F H++A R+
Sbjct: 592 FQD---------RSLPHFTKDDHSPES---KGFIENSYLRGLTPQEFFFHAMAGREGLID 639
Query: 404 DNADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + D+ YDGT RN G+ +IQF Y D
Sbjct: 640 TAVKTAETGYIQRRLVKALEDVMVQYDGTTRNSLGD-VIQFVYGED 684
>E7R7W7_PICAD (tr|E7R7W7) DNA-directed RNA polymerase OS=Pichia angusta (strain
ATCC 26012 / NRRL Y-7560 / DL-1) GN=HPODL_2651 PE=3 SV=1
Length = 1469
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 119/463 (25%), Positives = 189/463 (40%), Gaps = 76/463 (16%)
Query: 17 INPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLT 76
+N C+P DFDGD ++ ++PQ+ AR E L+ + L+ +SG +++ +QD +T
Sbjct: 498 LNECVCTPYNADFDGDEMNLHVPQTEEARAEAMNLMGVKNNLLTPKSGEPIIAATQDFIT 557
Query: 77 AAYMLM-EDGVLLNLYEIQQLQMLCDKKL---TPPPSIIKAPSRNNSLWSGKQLFSMLL- 131
+Y++ +D Q L M+ D L PPP+I K +W+GKQLFS+L+
Sbjct: 558 GSYLISNKDSFYDRATFTQMLAMMSDGALHVDIPPPAIFKPA----FMWTGKQLFSLLIR 613
Query: 132 ------------PSNFDYSFPPNG-----------VSVSDGELTSSFESSGWLRDSECN- 167
N + PP G V + + ++ S L D + +
Sbjct: 614 PNRQSKVVINLDAKNKTFVPPPPGMPSEMSPNDGFVVIRNSQILSGVMDKSTLGDGKKHS 673
Query: 168 IFQRLVERF-QDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYG 226
+F ++ + D+ N + K+ +L GF R+ + EI+Y
Sbjct: 674 VFYTILRDYGADEAANAMNRMAKLCARYLGNRGFSIGINDVTPGENLKNRKEQLVEIAY- 732
Query: 227 LQEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRH 286
+ CD + F +G L+ + E I LS+V
Sbjct: 733 -----RKCD------ELITLFKTGKLETQPGCN----EEQTLEAKIGGLLSKVR------ 771
Query: 287 MFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSC 346
+ + K K NA L M GSKG+ L + Q +G Q + +R+P
Sbjct: 772 --EEVGEVCIKELDKSNAPLIMATCGSKGSTLNVSQMVAVVGQQ---IISGHRVPDGFQD 826
Query: 347 AAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNA 406
S+P F KS Q V +SF +GL+P E H+++ R+
Sbjct: 827 ---------RSLPHFLKNSKSPQS---KGFVRNSFFSGLSPPEFLFHAISGREGLVDTAV 874
Query: 407 DLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G +RRLM M DL YD TVRN N ++QF+Y D
Sbjct: 875 KTAETGYTSRRLMKSMEDLSAGYDETVRN-SSNGIVQFNYGGD 916
>C3U0A1_9EURO (tr|C3U0A1) DNA-directed RNA polymerase (Fragment)
OS=Chaetothyriales sp. TRN488 GN=RPB1 PE=3 SV=1
Length = 985
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 120/463 (25%), Positives = 192/463 (41%), Gaps = 70/463 (15%)
Query: 6 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 65
VRV+P S+ +N +P DFDGD ++ ++PQS +R EL L + +++ Q
Sbjct: 372 VRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEESRAELANLCMVPLNIVSPQRNG 430
Query: 66 NLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCD--KKLTPPPSIIKAPSRNNSLWSG 123
L+ + QD+L Y + V LN ++ + + + P P+I K R W+G
Sbjct: 431 PLMGIVQDTLAGIYKICRRDVFLNREQVMNIMLWVPDWDGVIPNPAIFKPRPR----WTG 486
Query: 124 KQLFSMLLPSNF----------DYSFPP--NGVSVSDGELTSSFESSGWLRDSECNIFQR 171
KQ+ SM+LP N D FP NG+ V DG L S ++ S I
Sbjct: 487 KQMISMVLPKNLNLERLDGKGIDGWFPTVDNGLLVLDGNLMFGLFSKKFVGTSSGGIVHT 546
Query: 172 LVERF-QDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGLQEA 230
+ F + + AQ V+ WL GF + + +E++ E
Sbjct: 547 IFNEFGHEAAMGFFNGAQTVINYWLLHNGFSIGIGDTVPDAVTV--QKIQDEVTGRKNEV 604
Query: 231 EQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHMFRN 290
+ ++ + L G NV +E + A L+ A ++
Sbjct: 605 AKITKIAEM---EELEALPGM-----NVRE------TFESKVQAELNGARDKAGTATEQS 650
Query: 291 IQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCAAWN 350
++ L N + M +AGSKG+ + + Q + +G Q + R+P
Sbjct: 651 LKDL--------NNAIQMARAGSKGSTINIAQMTAIVGQQAVEGK---RIPF-------- 691
Query: 351 SEKGLN--SMPMFSNTLKSIQCYIP--HAVVESSFLTGLNPLECFAHSVANRDSSFSDNA 406
G N S+P F+ Y P VE+S+L GL P E F H++A R+
Sbjct: 692 ---GFNYRSLPHFAK-----DDYSPPSRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAV 743
Query: 407 DLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + ++ YDGTVR+ GN + QF Y D
Sbjct: 744 KTAETGYIQRRLVKALEEITVKYDGTVRDSKGN-VTQFIYGED 785
>A9Q9N6_9EURO (tr|A9Q9N6) DNA-directed RNA polymerase (Fragment) OS=Placidium
arboreum GN=RPB1 PE=3 SV=1
Length = 989
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 120/463 (25%), Positives = 193/463 (41%), Gaps = 66/463 (14%)
Query: 6 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 65
VRV+P S+ +N +P DFDGD ++ ++PQS +R EL +L + +++ Q
Sbjct: 379 VRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEESRAELAQLCMVPLNIVSPQRNG 437
Query: 66 NLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCD--KKLTPPPSIIKAPSRNNSLWSG 123
L+ + QD+L Y + V L+ E+ + + + P P+I K R W+G
Sbjct: 438 PLMGIVQDTLCGIYKICRRDVFLSREEVMNIMLWVPDWDGVIPQPAIFKPRPR----WTG 493
Query: 124 KQLFSMLLPSNFDY-------SFPP---------NGVSVSDGELTSSFESSGWLRDSECN 167
KQ+ SM+LPS + S PP +G+ V+DG+L + +
Sbjct: 494 KQMVSMVLPSALNLVRIDGKASQPPGERFAPVGDSGLFVADGQLMFGMFNKKSVGTGSNG 553
Query: 168 IFQRLVERFQDKTLNLLYD-AQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYG 226
I + F +T ++ AQ V+ WL GF E + E+
Sbjct: 554 IIHTIFNEFGHETAMAFFNGAQTVINYWLLHNGFSIGIGDTVPDVGTV--EKIKNEVDKK 611
Query: 227 LQEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRH 286
E E+ Q V + L G NV +E +SAAL+ +A
Sbjct: 612 KAEVER---ITQSAVAEDLEALPGM-----NVRE------TFESKVSAALNGARDEA--- 654
Query: 287 MFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSC 346
S + N + M +AGSKG+ + + Q + +G Q + R+P
Sbjct: 655 -----GSATENSLKDSNNAIQMARAGSKGSTINISQMTAIVGQQSVEGK---RIPFGFK- 705
Query: 347 AAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNA 406
++P F+ K VE+S+L GL P E F H++A R+
Sbjct: 706 --------YRTLPHFA---KDDYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAV 754
Query: 407 DLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + ++ YDGTVR+ GN ++QF Y D
Sbjct: 755 KTAETGYIQRRLVKALEEVTVKYDGTVRDSRGN-IVQFIYGED 796
>I7AW73_9ASCO (tr|I7AW73) DNA-directed RNA polymerase (Fragment) OS=Yamadazyma
scolyti PE=3 SV=1
Length = 863
Score = 120 bits (300), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 118/468 (25%), Positives = 205/468 (43%), Gaps = 74/468 (15%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M++ V+V+P S+ +N SP DFDGD ++ ++PQS R EL+++ A+ Q+++
Sbjct: 266 MMAHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSPETRAELSQICAVPLQIVS 324
Query: 61 GQSGRNLLSLSQDSLTAAY-MLMEDGVLLNLYEIQQLQMLCD-----KKLTPPPSIIKAP 114
QS + ++ + QD+L M + D N E Q+ + + PPP+++K
Sbjct: 325 PQSNKPVMGIVQDTLCGVRKMTLRD----NFIEYDQVMNMLYWIPNWDGVIPPPAVLKP- 379
Query: 115 SRNNSLWSGKQLFSMLLPSNFD--------YSFPPNGVSVSDGELTSSFESSGWLRDSEC 166
LW+GKQL SM +P S NG+ + DGE+ + +
Sbjct: 380 ---KPLWTGKQLLSMAIPKGIHIQRLESNLLSPNDNGMLIVDGEIMFGVVDKKTVGATGG 436
Query: 167 NIFQRLV-ERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISY 225
+ ++ E+ L + QKV+ WL GF A M+ ++
Sbjct: 437 GLIHTVMREKGPQVCAQLFGNIQKVVNFWLLHNGF------SIGIGDTIADSETMKTVTT 490
Query: 226 GLQEAEQACDFNQLLVDHYCDFLSG----SLQDSDNVASIDMDSLNYEKHISAALSEVSV 281
++EA+ ++++D + L +L++S +E ++S L++
Sbjct: 491 TIEEAKTKV--QEIILDAQRNKLEPEPGMTLRES------------FEHNVSRVLNQARD 536
Query: 282 DAFRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMP 341
A R +++ L N M +GSKG+ + + Q S C+G Q + R+P
Sbjct: 537 TAGRSAEMSLKDL--------NNVKQMVVSGSKGSFINISQMSACVGQQ---IVEGKRIP 585
Query: 342 RELSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSS 401
S ++P F+ S + +E+S+L GL P E F H++A R+
Sbjct: 586 FGFSD---------RTLPHFTKDDYSPES---KGFIENSYLRGLTPQEFFFHAMAGREGL 633
Query: 402 FSDNADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + D+ YDGT RN G+ +IQF Y D
Sbjct: 634 IDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGD-IIQFVYGED 680
>A5H2F3_9LECA (tr|A5H2F3) DNA-directed RNA polymerase (Fragment) OS=Rhizocarpon
superficiale GN=RPB1 PE=3 SV=1
Length = 991
Score = 120 bits (300), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 112/462 (24%), Positives = 195/462 (42%), Gaps = 61/462 (13%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M+ VRV+P S+ +N SP DFDGD ++ ++PQS R E+N+L + +++
Sbjct: 381 MMGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVNQLCMVPLNIVS 439
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCD--KKLTPPPSIIKAPSRNN 118
Q L+ + QD+L Y + V L ++ + + + P P+I K
Sbjct: 440 PQRNGPLMGIVQDTLCGIYKMCRRDVFLTKEQVMNILLWVPDWDGVIPHPAIFKP----R 495
Query: 119 SLWSGKQLFSMLLPSNFDYSFPP---------NGVSVSDGELTSSFESSGWLRDSECNIF 169
+W+GKQ+ S+++P N P +G+ V G+L + + S I
Sbjct: 496 PMWTGKQIISLVIPENLSLVRPSSEGFSPLNDDGLGVHGGQLMYGLFNKKSVGASGGGII 555
Query: 170 QRLV-ERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGL- 227
+ E+ + + AQ V+ WL GF N +++I +
Sbjct: 556 HIVFNEKGPEAAMKFFNGAQTVVNYWLLRNGF------SIGIGDTIPDRNTIQQIEDAVN 609
Query: 228 QEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHM 287
++ E + + ++ + L G NV +E +S AL++ DA
Sbjct: 610 KQKEDVAEITRNATENELEPLPGM-----NVRE------TFESKVSKALNKARDDAGTVT 658
Query: 288 FRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCA 347
+++ L N + M ++GSKG+ + + Q + G Q + R+P
Sbjct: 659 EESLKDL--------NNAIQMARSGSKGSTINISQMTAVAGQQSVEGK---RIPFGFK-- 705
Query: 348 AWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNAD 407
++P F+ S + VE+S+L GL P E F H++A R+
Sbjct: 706 -------YRTLPHFTKDDYSPES---RGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVK 755
Query: 408 LP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + D+ YDGTVRN G+ ++QF Y D
Sbjct: 756 TAETGYIQRRLVKALEDVMAKYDGTVRNSLGD-IVQFVYGED 796
>A5H2E2_9LECA (tr|A5H2E2) DNA-directed RNA polymerase (Fragment) OS=Myelochroa
aurulenta GN=RPB1 PE=3 SV=1
Length = 984
Score = 120 bits (300), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 115/462 (24%), Positives = 199/462 (43%), Gaps = 61/462 (13%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M+ VRV+P S+ +N SP DFDGD ++ ++PQS R E+N+L + +++
Sbjct: 372 MMGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCMVPLNIVS 430
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCD--KKLTPPPSIIKAPSRNN 118
Q L+ + QD+L Y + V L ++ + + + P P+I+K
Sbjct: 431 PQRNGPLMGIVQDTLCGIYKMCRRDVFLIKEQVMNILLWVPDWDGVIPQPAIVKPL---- 486
Query: 119 SLWSGKQLFSMLLPSNFDY------SFPP---NGVSVSDGELTSSFESSGWLRDSECNIF 169
++W+GKQ+ S+++P+ + F P +G+ +S GEL + + S +
Sbjct: 487 AMWTGKQILSLVIPTGLNLLRGTEEGFSPLNDDGLLISGGELMYGLLNKKTVGASGGGVI 546
Query: 170 QRLV-ERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCAR-ENMMEEISYGL 227
+ E+ + +N AQ V+ WL GF + EN + +
Sbjct: 547 HIVFNEKGPEAAMNFFNGAQTVVNYWLLHNGFSIGIGDTIPDRHTIQQIENAVNNQKAEV 606
Query: 228 QEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHM 287
E ++ N+L + L G NV +E +S AL++ DA
Sbjct: 607 MEITRSATENEL------ESLPGM-----NVRE------TFESKVSKALNKARDDA---- 645
Query: 288 FRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCA 347
++ +K N M ++GSKG+ + + Q + +G Q + R+P
Sbjct: 646 ----GTVTEKSLKDLNNATQMARSGSKGSTINISQMTAVVGQQSVEGK---RIPFGFK-- 696
Query: 348 AWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNAD 407
++P F+ S + VE+S+L GL P E F H++A R+
Sbjct: 697 -------YRTLPHFTKDDYSPES---RGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVK 746
Query: 408 LP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + D+ YDGTVRN G+ ++QF Y D
Sbjct: 747 TAETGYIQRRLVKALEDVMAKYDGTVRNSLGD-VVQFVYGED 787
>Q0PQ10_9LECA (tr|Q0PQ10) DNA-directed RNA polymerase (Fragment) OS=Physcia
aipolia GN=RPB1 PE=3 SV=1
Length = 1015
Score = 120 bits (300), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 118/463 (25%), Positives = 199/463 (42%), Gaps = 63/463 (13%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M+ VRV+P S+ +N SP DFDGD ++ ++PQS R E+++L + +++
Sbjct: 389 MMGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEISQLCMVPLNIVS 447
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCD--KKLTPPPSIIKAPSRNN 118
Q ++ + QD+L Y + V L+ ++ + + + P P+I+K R
Sbjct: 448 PQRNWPIMGIVQDTLCGIYKMCRRDVFLSEEQVMNILLWVPDWDGVIPQPAILKPRPR-- 505
Query: 119 SLWSGKQLFSMLLPSNFDY------SFPP---NGVSVSDGELTSSFESSGWLRDSECNIF 169
WSGKQ+ S++LP +Y F P GV V GEL + S+ I
Sbjct: 506 --WSGKQIISLVLPFTLNYLQADKAGFSPLKDEGVFVDGGELMYGLFRKQAVGASKQGII 563
Query: 170 QRLV-ERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXC-ARENMMEEISYGL 227
+ E+ + LN AQ V+ WL GF EN + E +
Sbjct: 564 HIIFNEKGPEAALNFFNGAQTVVNYWLLHNGFSIGIGDTIPDRKTIQGIENAVSEQKTEV 623
Query: 228 QEAEQACDFNQLLVDHYCDFLSG-SLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRH 286
E + ++L + L G S++++ +E + AAL++ +A
Sbjct: 624 TEITRKATADEL------ESLPGMSIRET------------FESKVQAALNQARENAGTK 665
Query: 287 MFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSC 346
+++ L N + M +GSKG+ + + Q + +G Q + R+P
Sbjct: 666 TQESLKDL--------NNAVQMALSGSKGSTINISQMTAIVGQQAVEGK---RIPFGFK- 713
Query: 347 AAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNA 406
++P F+ S + VE+S+L GL P E F H++A R+
Sbjct: 714 --------YRTLPHFTKDDYSPES---RGFVENSYLRGLTPTEFFFHAMAGREGLVDTAV 762
Query: 407 DLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + D+ YDGTVRN G+ ++QF Y D
Sbjct: 763 KTAETGYIQRRLVKALEDVMAKYDGTVRNSLGD-VVQFLYGED 804
>Q9BNP9_9MYRI (tr|Q9BNP9) DNA-directed RNA polymerase (Fragment) OS=Bothropolys
multidentatus PE=2 SV=2
Length = 624
Score = 120 bits (300), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 124/472 (26%), Positives = 202/472 (42%), Gaps = 71/472 (15%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M+ +RVLP S+ +N +P DFDGD ++ ++PQS+ R E+ EL + RQ+I
Sbjct: 108 MMGHHIRVLPWSTF-RMNLSVTTPYNADFDGDEMNLHVPQSMETRAEIEELAIVPRQIIT 166
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQM---LCDKKLTPPPSIIKAPSRN 117
QS R ++ + QD+LTA + + V L ++ L M + D K+ P P+I+K
Sbjct: 167 PQSNRPVMGIVQDTLTAVRKMTKRDVFLEKDQMMNLLMFLPIWDGKM-PMPAILKP---- 221
Query: 118 NSLWSGKQLFSMLLPSNFD-----YSFPPN--------------GVSVSDGELTSSFESS 158
LW+GKQLFS+++P N + YS P + V V GEL
Sbjct: 222 KPLWTGKQLFSLIIPGNVNCIRAHYSHPDDEDDSPYKWISPGDTKVLVEHGELICGILCK 281
Query: 159 GWLRDSECNIFQRLVERFQDKTLNLLY-DAQKVLCEWLSMTGFXXXXXXXXXXXXXCARE 217
L S ++ ++ L Y Q V+ WL + G A
Sbjct: 282 KTLGTSAGSLLHIVMLELGWGVAGLFYWHIQMVINNWLLLEGH------SIGIDDTIADP 335
Query: 218 NMMEEISYGLQEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALS 277
+I +++A+Q D +++ + D L + ++ +E ++ L+
Sbjct: 336 QTYIDIQNSIKKAKQ--DVIEVIEKAHNDELEPTPGNTLRQT--------FENQVNRILN 385
Query: 278 EVSVDAFRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLS 337
+ S +K S+ N F +M +G+KG + + Q +G Q+ +
Sbjct: 386 DAR--------DKTGSSAEKSLSEFNNFKSMVVSGAKGXXINISQVIXXVGQQNVEGK-- 435
Query: 338 YRMPRELSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVAN 397
R+P C ++P F +K+ VE+S+L GL P E F H++
Sbjct: 436 -RIPFGF-CK--------RTLPHF---IKNDYGPESRGFVENSYLAGLTPSEFFFHAMGG 482
Query: 398 RDSSFSDNADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
R+ G + RRL+ M + YDGT+RN G QLIQ Y D
Sbjct: 483 REGLIDTAVKTAETGYIQRRLIKAMESIMATYDGTIRNSVG-QLIQLRYGED 533
>F4S9X8_MELLP (tr|F4S9X8) DNA-directed RNA polymerase OS=Melampsora
larici-populina (strain 98AG31 / pathotype 3-4-7)
GN=MELLADRAFT_50989 PE=3 SV=1
Length = 1786
Score = 120 bits (300), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 119/478 (24%), Positives = 200/478 (41%), Gaps = 71/478 (14%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M+S ++++P S+ +N P DFDGD ++ ++PQS R EL ++ + R +++
Sbjct: 475 MMSHRIKLMPYSTF-RLNLSVTPPYNADFDGDEMNLHVPQSEETRAELAQIAWVPRNIVS 533
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCD--KKLTPPPSIIKAPSRNN 118
Q+ + ++ + QD+L ++ +Q + + + PPP+I+K
Sbjct: 534 PQANKPVMGIVQDTLCGVRKFTLRDCFMDRDFVQNILLWVPGWDGVVPPPAILKP----K 589
Query: 119 SLWSGKQLFSMLLPSNFDY--------SFP--PNGVSVSDGELTSSFESSGWLRDSECNI 168
LW+GKQ+ SM +P + S P G+ + DGE+ + S+ I
Sbjct: 590 PLWTGKQILSMCIPKGINLFRDDENQTSIPVADKGMWIEDGEIIYGVVDKKTVGASQGGI 649
Query: 169 FQRLV-ERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGL 227
+ E+ + T L Q V+ WL GF + ME I+ +
Sbjct: 650 IHVIFREKGPEVTRGLFSGIQMVVNYWLLHHGF------SIGIGDTVPDKGTMETITKFI 703
Query: 228 QEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALS-EVSVDAFRH 286
EA+ L+ ++ ++ D L E ++ S E V+ +
Sbjct: 704 SEAK--------------------LEVANVISMAQEDKLQPEPGMTIRESFEAKVNRALN 743
Query: 287 MFR-NIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELS 345
M R N ++ N M AGSKG+ + + Q S C+G Q + R+P
Sbjct: 744 MARDNAGRSAEQSLKDDNNVKQMVTAGSKGSFINISQMSACVGQQSVEGK---RIPYGFK 800
Query: 346 CAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDN 405
++P F+ S + VE+S+L GL P E F H++A R+
Sbjct: 801 ---------YRTLPHFTKDDYSPES---RGFVENSYLRGLTPQEFFFHAMAGREGLIDTA 848
Query: 406 ADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTDKDSSCDSGFQEGTV 461
G + RRL+ + D+ AYDGTVRN G+ ++QF Y D G GTV
Sbjct: 849 VKTAETGYIQRRLVKALEDVMVAYDGTVRNSLGD-IVQFVYGED-------GVDGGTV 898
>Q1L5Y5_9VIRI (tr|Q1L5Y5) DNA-directed RNA polymerase (Fragment) OS=Chara hispida
GN=RPD1 PE=2 SV=1
Length = 1144
Score = 120 bits (300), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 120/233 (51%), Gaps = 34/233 (14%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
+I+ ++P +S INP+ C P DFDGD ++ ++P S+ A+ E +L+ L +Q+++
Sbjct: 384 VIAFRACIVP-TSAFGINPVVCGPFNADFDGDEMNLFVPTSLEAQAEARQLLLLRKQVVS 442
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCDK-----------KLTPPPS 109
Q GR ++SL QDSL AA+ML + V LN E+ QL M D+ + P P+
Sbjct: 443 SQDGRAIVSLRQDSLLAAHMLTSEYVFLNRQEVSQLAMCADEFGQPVGVDSRSTILPEPA 502
Query: 110 IIKAPS------RNNSLWSGKQLFSMLLPSNFDYSF-PPNGVSVSDGE-LTSSFESSGWL 161
I+K P+ ++ LW+G+Q+F M L F+Y + +GV + DGE L S SS WL
Sbjct: 503 ILKWPAXKHQNGESSGLWTGQQVFGMSLFKGFEYDWLDEDGVLIRDGELLVSEGLSSAWL 562
Query: 162 RDSECNIFQRLVERFQDK--------------TLNLLYDAQKVLCEWLSMTGF 200
R + L E ++ +N L Q + E+L + GF
Sbjct: 563 RSGREGLTHALWELGEESFCCSSGRNVFLESFAVNHLNKIQAIANEFLQLKGF 615
Score = 62.8 bits (151), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 99/249 (39%), Gaps = 40/249 (16%)
Query: 375 AVVESSFLTGLNPLECFAHSVANRDSSFSDNADL--PGTLTRRLMFFMRDLYQAYDGTVR 432
V++ + GL P + F+H +A R ++ PG L R+L + DL AYDGTVR
Sbjct: 834 GVIDRGLVEGLTPSQFFSHFIAERYGLLQKTGEIKDPGVLQRQLSRGLEDLTLAYDGTVR 893
Query: 433 NLYGNQLIQFSYDTDKDSSCDSGFQEGTVGGEPVGALS------ACAISEAAYSALGQPI 486
+G ++QF Y+ ++ + G +PVG ++ A ALGQPI
Sbjct: 894 --FGPHIVQFEYE-------GLSLKKTSGGSKPVGYCMRELVDFGDSVGAVAAQALGQPI 944
Query: 487 ----------SLLETSPLL-NLKNVLECGSRKKSGDQTVSLFLSDKLGKQRYGFEY--AA 533
+ L PL+ L+ VL K + + FL +L K G A
Sbjct: 945 QQLVLDAPHHAGLVGGPLIKQLQAVLNLSKNKPNSTKKSQFFL--RLAKPTEGEVQLTRA 1002
Query: 534 LEVKNYLERVMFSDIVSTVMIMFTPQSSSLEIFN--------PWVCHFHLDKEIVARRKL 585
EV L V S ++ + F + + P+ HF L KE + L
Sbjct: 1003 CEVLGALYPVPLSKVLEETYVSFEEEPYEIRTDRPDVGRHAFPFAIHFKLSKEALCTNGL 1062
Query: 586 TVHSVIESL 594
V+ L
Sbjct: 1063 DGPEVLSRL 1071
>B6QAY2_PENMQ (tr|B6QAY2) DNA-directed RNA polymerase OS=Penicillium marneffei
(strain ATCC 18224 / CBS 334.59 / QM 7333)
GN=PMAA_074330 PE=3 SV=1
Length = 1744
Score = 119 bits (299), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 118/467 (25%), Positives = 196/467 (41%), Gaps = 65/467 (13%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M+ VRV+P S+ +N +P DFDGD ++ ++PQS AR EL +L + +++
Sbjct: 471 MMGHRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNMHVPQSEEARAELLQLALVPNNIVS 529
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCDK--KLTPPPSIIKAPSRNN 118
Q L+ + QDSL Y + V L ++ L + + P P+IIK R
Sbjct: 530 PQRNGPLMGIVQDSLCGIYKICRRDVFLTKDQVMNLMLWVPDWDGVIPQPAIIKPRPR-- 587
Query: 119 SLWSGKQLFSMLLPSNFDY------------SFPP---NGVSVSDGELTSSFESSGWLRD 163
W+GKQ+ SM+LPS + F P G+ V G+L S +
Sbjct: 588 --WTGKQIISMVLPSGLNLLRVDKDKAPLSEKFSPLTDGGILVHGGQLMYGMFSKKTVGA 645
Query: 164 SECNIFQRLVERF-QDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEE 222
S + + + + ++ AQ+V+ WL GF R + +
Sbjct: 646 SGGGVVHTIFNEYGPEAAVSFFNGAQRVVNYWLLHNGFSIGIGDTIPDKKTIER--IEDA 703
Query: 223 ISYGLQEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVD 282
+ G E E+ Q ++ + L G N+ +E +S AL+
Sbjct: 704 VRAGKAEVEEIV---QSATENTLEALPGM-----NIRE------TFESKVSRALNNAREA 749
Query: 283 AFRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPR 342
A ++++ L N + M ++GSKG+ + + Q + +G Q + R+P
Sbjct: 750 AGSETEKSLKDL--------NNAIQMARSGSKGSAINISQMTAIVGQQSVEGK---RIPF 798
Query: 343 ELSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSF 402
++P F+ S + VE+S+L GL P E F H++A R+
Sbjct: 799 GFK---------YRTLPHFTKDDYSPES---RGFVENSYLRGLTPTEFFFHAMAGREGLI 846
Query: 403 SDNADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + R+L+ + +L YDGTVRN G+ +IQF Y D
Sbjct: 847 DTAVKTAETGYIQRKLVKALEELMVKYDGTVRNSLGD-IIQFLYGED 892
>I7B971_9ASCO (tr|I7B971) DNA-directed RNA polymerase (Fragment) OS=Phaffomyces
opuntiae PE=3 SV=1
Length = 871
Score = 119 bits (299), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 134/519 (25%), Positives = 217/519 (41%), Gaps = 84/519 (16%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M++ V+V+P S+ +N SP DFDGD ++ ++PQS R EL + A+ Q+++
Sbjct: 268 MMAHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELMNIAAVPLQIVS 326
Query: 61 GQSGRNLLSLSQDSLTAAY-MLMEDGVLLNLYEIQQLQMLCD-KKLTPPPSIIKAPSRNN 118
QS + + + QD+L M + D + + L + D + P P+I+K
Sbjct: 327 PQSNKPCMGIVQDTLAGVRKMTLRDSFIEYDQMMNILYWISDWDGVIPQPAILKP----K 382
Query: 119 SLWSGKQLFSMLLPSN-----FD-----YSFPPNGVSVSDGELTSSFESSGWLRDSECNI 168
LWSGKQ+ SM +P FD S NG+ + +GE+ + + +
Sbjct: 383 PLWSGKQMLSMTIPKGIHLQRFDEGTTLLSPKDNGMLIVNGEILFGVVDKKTVGATNGGL 442
Query: 169 FQRLV-ERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGL 227
++ E+ + +L QKV+ WL GF A M+EI+ +
Sbjct: 443 IHTVMREKGAAQCADLFGKIQKVVNFWLLHNGF------SIGIGDTIADAGTMKEITEAI 496
Query: 228 QEAEQACDF-------NQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVS 280
A++ D N+L H +L++S +E ++ L+E
Sbjct: 497 AIAKEKVDEVTLEAQQNKLTAKHGM-----TLRES------------FEDNVIRYLNEAR 539
Query: 281 VDAFRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQH-SLVRLSYR 339
A R N++ L N M AGSKG+ + + Q S C+G Q R+++
Sbjct: 540 DKAGRSAEVNLKGL--------NNVKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIAFG 591
Query: 340 MPRELSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRD 399
++P F+ S + VE+S+L GL P E + H++ R+
Sbjct: 592 FADR-------------TLPHFAKDDYSPES---KGFVENSYLRGLTPQEFYFHAMGGRE 635
Query: 400 SSFSDNADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTDKDSSCDSGFQ 457
G + RRL+ + D+ YDGT RN GN +IQF Y D D+G
Sbjct: 636 GLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGN-IIQFIYGED---GLDAGHV 691
Query: 458 E----GTVGGEPVGALSACAISEAAYSALGQPISLLETS 492
E T+ GE + I + +P SLLET
Sbjct: 692 EKQTIDTIPGEDIAFEKRYKIDLVSEKTSIKP-SLLETG 729
>A9Q9S1_9EURO (tr|A9Q9S1) DNA-directed RNA polymerase (Fragment) OS=Verrucaria
marmorea GN=RPB1 PE=3 SV=1
Length = 999
Score = 119 bits (299), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 122/463 (26%), Positives = 193/463 (41%), Gaps = 66/463 (14%)
Query: 6 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 65
VRV+P S+ +N +P DFDGD ++ ++PQS +R EL +L + +++ Q
Sbjct: 379 VRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEESRAELAQLCMVPLNIVSPQRNG 437
Query: 66 NLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCD--KKLTPPPSIIKAPSRNNSLWSG 123
L+ + QD+L Y + V L+ E+ + + + P P+I K R W+G
Sbjct: 438 PLMGIVQDTLCGIYKICRRDVFLSRDEVMNIMLWVPDWDGVIPQPAIFKPRPR----WTG 493
Query: 124 KQLFSMLLPSNFDY-------SFPP---------NGVSVSDGELTSSFESSGWLRDSECN 167
KQ+ SM+LP + S PP +G+ VSDG+L + +
Sbjct: 494 KQMISMVLPPALNLVRIDGKASQPPAERFAPAGDSGLFVSDGQLMFGLFNKKSVGTGSNG 553
Query: 168 IFQRLVERFQDKT-LNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYG 226
I + F +T + L AQ V+ WL GF E + E+
Sbjct: 554 IIHTIYNEFGHETCMAFLNGAQTVVNYWLLHNGFSIGIGDTVPDVGTV--EKIKFEVDKK 611
Query: 227 LQEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRH 286
E E+ Q V + L G NV +E +SAAL+ +A
Sbjct: 612 KAEVER---ITQSAVAEDLEALPGM-----NVRE------TFESKVSAALNGARDEAGSA 657
Query: 287 MFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSC 346
+++ + N +TM +AGSKG+ + + Q + G Q + R+P
Sbjct: 658 TENSLKDI--------NNAITMARAGSKGSTINISQMTAIAGQQSVEGK---RIPFGFK- 705
Query: 347 AAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNA 406
++P F+ K VESS+L GL P E F H++A R+
Sbjct: 706 --------YRTLPHFA---KDDYSAASKGFVESSYLRGLTPTEFFFHAMAGREGLIDTAV 754
Query: 407 DLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + ++ YDGTVR GN ++QF Y D
Sbjct: 755 KTAETGYIQRRLVKALEEVTVKYDGTVRGSRGN-IVQFIYGED 796
>M0VCV5_HORVD (tr|M0VCV5) Uncharacterized protein OS=Hordeum vulgare var.
distichum PE=4 SV=1
Length = 148
Score = 119 bits (299), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 63/158 (39%), Positives = 95/158 (60%), Gaps = 12/158 (7%)
Query: 651 AKLEAVRDLMIPFLLGTVIKGFLEIKKVDILWSNRSKVSNSYAGSSGELYLRVTMSSDG- 709
++L+ ++ +IP LL ++KGFLE KKV+I EL ++V MS D
Sbjct: 2 SQLDTIKKKVIPNLLALLVKGFLEFKKVEI-----------QCQEDRELVVKVVMSEDHC 50
Query: 710 DSGRFWGVLINHCHRIMPMIDWTRSHPDNIHHFCSAYGIDAGRQYFLHSLASATTETGKS 769
S +FW L C IM +IDW RS P +++ +YGID+ +YF+ SL S T + G++
Sbjct: 51 KSVKFWATLQKSCIAIMELIDWERSRPGSVYDIFCSYGIDSAWKYFVESLRSKTDDIGRN 110
Query: 770 ILPKHLHLVANSLSASGEFVGLNAKGIGRQRKHASVSS 807
I +HL +VAN LS SG+F GL+++G+ +QR S+SS
Sbjct: 111 IRREHLLVVANCLSVSGQFHGLSSQGLKQQRTRLSISS 148
>I7B5D0_9ASCO (tr|I7B5D0) DNA-directed RNA polymerase (Fragment) OS=Candida tepae
PE=3 SV=1
Length = 872
Score = 119 bits (299), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 116/466 (24%), Positives = 202/466 (43%), Gaps = 68/466 (14%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M++ VRV+P S+ +N SP DFDGD ++ ++PQS R EL++L + Q+I+
Sbjct: 268 MMAHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCMVPLQIIS 326
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCD--KKLTPPPSIIKAPSRNN 118
QS + ++ + QD+L L + + ++ + + P P+I+K
Sbjct: 327 PQSNKPVMGIVQDTLCGIRKLTKRDTFVEFDQVMNILFWIPDWDGVVPQPAILKP----K 382
Query: 119 SLWSGKQLFSMLLPSN-----FDYSFP-----PNGVSVSDGELTSSFESSGWLRDSECNI 168
LW+GKQ+ S+ +P FD P NG+ ++ GE+ + + +
Sbjct: 383 PLWTGKQMVSLCIPKGIFMQRFDDQNPITSPKDNGMLIAKGEIIYGVVDKKTVGATAGGL 442
Query: 169 FQRLV-ERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGL 227
++ E+ N + QKV+ WL GF A M++I+ +
Sbjct: 443 IHTIMREKGPQICCNFFGNLQKVINYWLLHNGF------SIGIGDTIADAATMKDITNTI 496
Query: 228 QEAEQACDFNQLLVDHYCDFLSG----SLQDSDNVASIDMDSLNYEKHISAALSEVSVDA 283
EA+ +++ + + L+ +L++S +E ++S L++ A
Sbjct: 497 AEAKNKV--QEIIFEAQMNKLAPEPGMTLRES------------FEHNVSRVLNQARDTA 542
Query: 284 FRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRE 343
R +++ L N M AGSKG+ + + Q S C+G Q + R+P
Sbjct: 543 GRSAEMSLKEL--------NNVKQMVIAGSKGSFINISQMSACVGQQ---IVEGKRIPFG 591
Query: 344 LSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFS 403
S+P F+ S + +E+S+L GL P E F H++A R+
Sbjct: 592 FQD---------RSLPHFTKDDHSPES---KGFIENSYLRGLTPQEFFFHAMAGREGLID 639
Query: 404 DNADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + D+ YDGT RN G+ +IQF Y D
Sbjct: 640 TAVKTAETGYIQRRLVKALEDVMVQYDGTTRNSLGD-VIQFVYGED 684
>Q0PQ00_9LECA (tr|Q0PQ00) DNA-directed RNA polymerase (Fragment) OS=Umbilicaria
mammulata GN=RPB1 PE=3 SV=1
Length = 1014
Score = 119 bits (299), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 113/461 (24%), Positives = 198/461 (42%), Gaps = 59/461 (12%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M+ VRV+P S+ +N SP DFDGD ++ ++PQS R E+N+L + +++
Sbjct: 390 MMGHRVRVVPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCMVPLNIVS 448
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCD--KKLTPPPSIIKAPSRNN 118
Q L+ + QD+L Y + V L ++ + + + P P+I+K +
Sbjct: 449 PQRNGPLMGIVQDTLCGIYKMCRRDVFLTKDQVMNILLWVPDWDGVIPQPAILKPRPK-- 506
Query: 119 SLWSGKQLFSMLLPSNFDY------SFPP---NGVSVSDGELTSSFESSGWLRDSECNIF 169
W+GKQL S+++P+ + P +G+ V GEL S + S I
Sbjct: 507 --WTGKQLISLVIPAGLNLIRTSEEGLSPANDDGLFVHGGELMYGLLSKKSVGASAGGII 564
Query: 170 QRLV-ERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGLQ 228
+ E+ + +N AQ V+ WL GF + +Q
Sbjct: 565 HIIFNEKGPEAAMNFFNGAQTVVNYWLLHNGFSIGIGDTIPD-------------RHTIQ 611
Query: 229 EAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHMF 288
+ E A + + V S + + + + +++ +E +S AL++ DA
Sbjct: 612 QIEDAVNNQKADVAEIT--RSATENELEPLPGMNVRE-TFESKVSKALNKARDDAGTKTE 668
Query: 289 RNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCAA 348
+++ L N + M ++GSKG+ + + Q + +G Q + R+P
Sbjct: 669 ESLKDL--------NNAIQMARSGSKGSTINISQMTAVVGQQSVEGK---RIPFGFK--- 714
Query: 349 WNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNADL 408
++P F+ S + VE+S+L GL P E F H++A R+
Sbjct: 715 ------YRTLPHFTKDDYSPES---RGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKT 765
Query: 409 P--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + D+ YDGTVRN G+ ++QF Y D
Sbjct: 766 AETGYIQRRLVKALEDVMAKYDGTVRNSLGD-IVQFIYGED 805
>M4N648_9ASCO (tr|M4N648) RNA polymerase I (Fragment) OS=Nadsonia commutata PE=4
SV=1
Length = 831
Score = 119 bits (299), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 118/468 (25%), Positives = 202/468 (43%), Gaps = 72/468 (15%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M++ VRV+P S+ +N SP DFDGD ++ ++PQS R EL++L + Q+++
Sbjct: 227 MMAHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCMVPLQIVS 285
Query: 61 GQSGRNLLSLSQDSLTAAY-MLMEDGVLLNLYEIQQLQMLCD-----KKLTPPPSIIKAP 114
QS + ++ + QD+L M + D + +Q+ +C + P P+I+K
Sbjct: 286 PQSNKPVMGIVQDTLCGIRKMTLRD----TFIDFEQVMNICFWVPGWDGVVPTPAILKP- 340
Query: 115 SRNNSLWSGKQLFSMLLPSN-----FDYSFP-----PNGVSVSDGELTSSFESSGWLRDS 164
LW+GKQ+ S+ +P FD S P NG+ + DG++ + +
Sbjct: 341 ---KPLWTGKQMASLCIPKGIHLQRFDDSNPIISPKDNGMYIVDGQIIYGVVDKKTIGAT 397
Query: 165 ECNIFQRLV-ERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEI 223
+ ++ E+ N + QK + WL GF A M +I
Sbjct: 398 GGGLVHTIMREKGSQICCNFFGNIQKTVNFWLLHNGF------SIGIGDTIADAATMRDI 451
Query: 224 SYGLQEAEQACD--FNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSV 281
+ + EA+Q N+ + +L++S +E ++S L++
Sbjct: 452 TNTIAEAKQKVQEIINEAQANTLSPEPGMTLRES------------FEHNVSRVLNQARD 499
Query: 282 DAFRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMP 341
A R +++ L N M +GSKG+ + + Q S C+G Q + R+P
Sbjct: 500 TAGRSAEMSLKDL--------NNVKQMVVSGSKGSFINISQMSACVGQQ---IVEGKRIP 548
Query: 342 RELSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSS 401
S ++P F+ S + +E+S+L GL P E F H++A R+
Sbjct: 549 YGFSD---------RTLPHFTKDDYSPES---KGFIENSYLRGLTPQEFFFHAMAGREGL 596
Query: 402 FSDNADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + D+ YDGT RN G+ +IQF Y D
Sbjct: 597 IDTAVKTAETGYIQRRLVKALEDVMVQYDGTTRNSLGD-IIQFVYGED 643
>A9Q9N3_9EURO (tr|A9Q9N3) DNA-directed RNA polymerase (Fragment) OS=Placidium
lachneum GN=RPB1 PE=3 SV=1
Length = 989
Score = 119 bits (299), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 119/463 (25%), Positives = 192/463 (41%), Gaps = 66/463 (14%)
Query: 6 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 65
VRV+P S+ +N +P DFDGD ++ ++PQS +R EL +L + +++ Q
Sbjct: 379 VRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEESRAELAQLCMVPLNIVSPQRNG 437
Query: 66 NLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCD--KKLTPPPSIIKAPSRNNSLWSG 123
L+ + QD+L Y + V L+ E+ + + + P P+I K R W+G
Sbjct: 438 PLMGIVQDTLCGIYKICRRDVFLSREEVMNIMLWVPDWDGVIPQPAIFKPRPR----WTG 493
Query: 124 KQLFSMLLPSNFDY-------SFPP---------NGVSVSDGELTSSFESSGWLRDSECN 167
KQ+ SM+LPS + S PP G+ V+DG+L + +
Sbjct: 494 KQMVSMVLPSALNLVRIDGKASQPPGERFAPVGDGGLFVADGQLMFGMFNKKSVGTGSNG 553
Query: 168 IFQRLVERFQDKTLNLLYD-AQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYG 226
+ + F +T ++ AQ V+ WL GF E + E+
Sbjct: 554 VIHTIFNEFGHETAMAFFNGAQTVINYWLLHNGFSIGIGDTVPDVGTV--EKIKNEVDKK 611
Query: 227 LQEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRH 286
E E+ Q V + L G NV +E +SAAL+ +A
Sbjct: 612 KAEVER---ITQSAVAEDLEALPGM-----NVRE------TFESKVSAALNGARDEA--- 654
Query: 287 MFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSC 346
S + N + M +AGSKG+ + + Q + +G Q + R+P
Sbjct: 655 -----GSATENSLKDSNNAIQMARAGSKGSTINISQMTAIVGQQSVEGK---RIPFGFK- 705
Query: 347 AAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNA 406
++P F+ K VE+S+L GL P E F H++A R+
Sbjct: 706 --------YRTLPHFA---KDDYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAV 754
Query: 407 DLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + ++ YDGTVR+ GN ++QF Y D
Sbjct: 755 KTAETGYIQRRLVKALEEVTVKYDGTVRDSRGN-IVQFIYGED 796
>A9Q9L3_9EURO (tr|A9Q9L3) DNA-directed RNA polymerase (Fragment) OS=Verrucaria
baldensis GN=RPB1 PE=3 SV=1
Length = 998
Score = 119 bits (299), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 119/463 (25%), Positives = 194/463 (41%), Gaps = 66/463 (14%)
Query: 6 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 65
VRV+P S+ +N +P DFDGD ++ ++PQS +R EL +L + +++ Q
Sbjct: 378 VRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEESRAELAQLCMVPLNIVSPQRNG 436
Query: 66 NLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCD--KKLTPPPSIIKAPSRNNSLWSG 123
L+ + QD+L Y + V L+ E+ + + + P P+I K R W+G
Sbjct: 437 PLMGIVQDTLCGIYKVCRRDVFLSREEVMNIMLWVPDWDGVIPQPAIFKPRPR----WTG 492
Query: 124 KQLFSMLLPSNFDY-------SFPP---------NGVSVSDGELTSSFESSGWLRDSECN 167
KQ+ SM+LP + S PP +G+ VSDG+L + +
Sbjct: 493 KQMISMVLPPALNLVRIDGKASQPPGERFAPAGDSGLFVSDGQLMFGLFNKKSVGTGSNG 552
Query: 168 IFQRLVERFQDKTLNLLYD-AQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYG 226
I + F + ++ AQ V+ WL GF E + E+
Sbjct: 553 IIHTIYNEFGHEVAQAFFNGAQTVVNYWLLHNGFSIGIGDTVPDVGTV--EKIKSEVDKK 610
Query: 227 LQEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRH 286
E E+ Q V + L G NV +E +SAAL+ +A
Sbjct: 611 KAEVER---ITQSAVAEDLEALPGM-----NVRE------TFESKVSAALNGARDEAGSA 656
Query: 287 MFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSC 346
+++ + N +TM +AGSKG+ + + Q + +G Q + R+P
Sbjct: 657 TENSLKDI--------NNAITMARAGSKGSTINISQMTAIVGQQSVEGK---RIPFGFK- 704
Query: 347 AAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNA 406
++P F+ K VE+S+L GL P E F H++A R+
Sbjct: 705 --------YRTLPHFA---KDDYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAV 753
Query: 407 DLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + ++ YDGTVR+ GN ++QF Y D
Sbjct: 754 KTAETGYIQRRLVKALEEVTVKYDGTVRDSRGN-IVQFIYGED 795
>A5H279_9LECA (tr|A5H279) DNA-directed RNA polymerase (Fragment) OS=Hypotrachyna
degelii GN=RPB1 PE=3 SV=1
Length = 925
Score = 119 bits (299), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 112/468 (23%), Positives = 201/468 (42%), Gaps = 73/468 (15%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M+ VRV+P S+ +N SP DFDGD ++ ++PQS R E+N+L + +++
Sbjct: 299 MMGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCMVPLNIVS 357
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCD--KKLTPPPSIIKAPSRNN 118
Q L+ + QD+L Y + V L ++ + + + P P+I+K
Sbjct: 358 PQRNGPLMGIVQDTLCGIYKMCRRDVFLTKEQVMNILLWVPDWDGVIPQPAIVKPL---- 413
Query: 119 SLWSGKQLFSMLLPSNFDY------SFPP---NGVSVSDGELTSSFESSGWLRDSECNIF 169
++W+GKQ+ S+++P+ + F P +G+ +S GEL + + S +
Sbjct: 414 AMWTGKQILSLVIPTGLNLLRGSEEGFSPLNDDGLLISGGELMYGLLNKKTVGASPGGVI 473
Query: 170 QRLV-ERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGLQ 228
+ E+ + ++ AQ V+ WL GF + +Q
Sbjct: 474 HIVFNEKGPEAAMDFFNGAQTVVNYWLLHNGFSIGIGDTIPD-------------RHTIQ 520
Query: 229 EAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSL-------NYEKHISAALSEVSV 281
+ E A + + V L+ + + +++SL +E +S AL++
Sbjct: 521 QIENAVNNQKAEV----------LEITRSATENELESLPGMNVRETFESKVSKALNKARD 570
Query: 282 DAFRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMP 341
DA ++ +K N M ++GSKG+ + + Q + +G Q + R+P
Sbjct: 571 DA--------GTVTEKSLKDLNNATQMARSGSKGSTINISQMTAVVGQQSVEGK---RIP 619
Query: 342 RELSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSS 401
++P F+ S + VE+S+L GL P E F H++A R+
Sbjct: 620 FGFK---------YRTLPHFTKDDYSPES---RGFVENSYLRGLTPTEFFFHAMAGREGL 667
Query: 402 FSDNADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + D+ YDGTVRN G+ ++QF Y D
Sbjct: 668 IDTAVKTAETGYIQRRLVKALEDVMAKYDGTVRNSLGD-IVQFVYGED 714
>A9Q9T5_9EURO (tr|A9Q9T5) DNA-directed RNA polymerase (Fragment) OS=Verrucula
arnoldaria GN=RPB1 PE=3 SV=1
Length = 999
Score = 119 bits (299), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 117/463 (25%), Positives = 193/463 (41%), Gaps = 66/463 (14%)
Query: 6 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 65
VRV+P S+ +N +P DFDGD ++ ++PQS +R EL +L + +++ Q
Sbjct: 379 VRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEESRAELAQLCMVPLNIVSPQRNA 437
Query: 66 NLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCDK--KLTPPPSIIKAPSRNNSLWSG 123
L+ + QD+L Y + + L+ E+ + + + P P+I+K R W+G
Sbjct: 438 PLMGIVQDTLCGIYKICRRDIFLSREEVMNIMLWVPDWDGVIPQPAIVKPRPR----WTG 493
Query: 124 KQLFSMLLPSNFDY-------------SFPPNGVS---VSDGELTSSFESSGWLRDSECN 167
KQ+ SM+LP + F P G S V+DG+L + +
Sbjct: 494 KQVISMVLPPALNLVRIDGKEPQPPGERFAPAGDSGLFVADGQLMFGLFNKKSVGTGSNG 553
Query: 168 IFQRLVERFQDKTLNLLYD-AQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYG 226
I + F +T ++ AQ V+ WL GF E + E+
Sbjct: 554 IIHTIFNEFGHETAMAFFNGAQTVVNYWLLHNGFSIGIGDTVPDVGTV--EKIKREVDRK 611
Query: 227 LQEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRH 286
E E+ Q+ V + L G NV +E +SAAL+ +A
Sbjct: 612 KAEVER---ITQMAVAEDLEALPGM-----NVRE------TFESKVSAALNGARDEAGTA 657
Query: 287 MFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSC 346
+++ + N + M +AGSKG + + Q + +G Q + R+P
Sbjct: 658 TENSLKDI--------NNAIQMARAGSKGTTINISQMTAIVGQQSVEGK---RIPFGFK- 705
Query: 347 AAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNA 406
++P F+ K VE+S+L GL P E F H++A R+
Sbjct: 706 --------YRTLPHFA---KDDYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAV 754
Query: 407 DLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + ++ YDGTVR+ GN ++QF Y D
Sbjct: 755 KTAETGYIQRRLVKALEEVTVKYDGTVRDSRGN-IVQFIYGED 796
>F2SXT8_TRIRC (tr|F2SXT8) DNA-directed RNA polymerase OS=Trichophyton rubrum
(strain ATCC MYA-4607 / CBS 118892) GN=TERG_07396 PE=3
SV=1
Length = 1744
Score = 119 bits (299), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 124/474 (26%), Positives = 200/474 (42%), Gaps = 68/474 (14%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M+S VRV+P S+ +N +P DFDGD ++ ++PQS AR ELN+L + +++
Sbjct: 472 MMSHRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEEARAELNQLCLVPLNIVS 530
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCD--KKLTPPPSIIKAPSRNN 118
Q L+ + QD+L Y + V L ++ + + + P P+I+K R
Sbjct: 531 PQRNGPLMGIVQDTLCGIYKICRRDVFLTKEQVMNVLLWVPDWDGVLPQPAILKPRPR-- 588
Query: 119 SLWSGKQLFSMLLPSNFDY------------SFPP---NGVSVSDGELTSSFESSGWLRD 163
WSGKQ+ SM+LPS + F P GV V GEL S +
Sbjct: 589 --WSGKQMISMVLPSGLNLLRIDKDKSPISEKFSPLADGGVLVHGGELMYGMFSKKTVGA 646
Query: 164 SECNIFQRLVERF-QDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEE 222
S I + + D ++ AQ V+ WL GF +E
Sbjct: 647 SGGGIVHTIFNEYGPDAAMSFFNGAQAVVNYWLLHNGFSIGIGDTIPD---------LET 697
Query: 223 ISYGLQEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMD-SLNYEKHISAALSEVSV 281
I Q+ E A + VD ++ S ++ A M+ +E +S AL+
Sbjct: 698 I----QKIENAVRVRKEEVDS----ITASATENTLEALPGMNVRETFESKVSRALNNARD 749
Query: 282 DAFRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMP 341
+A + +K N + M ++GSKG+ + + Q + +G Q + R+P
Sbjct: 750 EA--------GTATEKSLKDSNNAVQMARSGSKGSTINISQMTAVVGQQSVEGK---RIP 798
Query: 342 RELSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSS 401
++P F+ S + VE+S+L GL P E F H++A R+
Sbjct: 799 FGFK---------YRTLPHFTKDDYSPES---RGFVENSYLRGLTPTEFFFHAMAGREGL 846
Query: 402 FSDNADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTDK-DSSC 452
G + R+L+ + ++ YDGTVRN G+ ++QF Y D D C
Sbjct: 847 IDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGD-IVQFLYGEDGLDGQC 899
>J4IAY2_FIBRA (tr|J4IAY2) DNA-directed RNA polymerase OS=Fibroporia radiculosa
(strain TFFH 294) GN=FIBRA_05852 PE=3 SV=1
Length = 1621
Score = 119 bits (299), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 119/475 (25%), Positives = 202/475 (42%), Gaps = 67/475 (14%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M+S V+++P S+ +N P DFDGD ++ ++PQS R EL+++ + RQ+I+
Sbjct: 318 MMSHRVKLMPYSTF-RLNLSVTPPYNADFDGDEMNMHVPQSEETRAELSQIAWVPRQIIS 376
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCD--KKLTPPPSIIKAPSRNN 118
Q+ + ++++ QD+L L+ ++Q + + P P++IK
Sbjct: 377 PQANKPVMAIVQDTLCGIRKFTLRDTFLDWNQVQNILLWVPDWDGSVPLPTVIKP----K 432
Query: 119 SLWSGKQLFSMLLPSNFDY-------SFPP---NGVSVSDGELTSSFESSGWLRDSECNI 168
LW+GKQ+ SM +P + SF P +G+++ +GE+ + S+ +
Sbjct: 433 PLWTGKQILSMCIPRGINIYRSPDPKSFNPVFDDGMNIENGEILFGVVEKKTVGASQGGL 492
Query: 169 FQ-RLVERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGL 227
E+ + T L Q+V+ WL GF A ++ E+I+
Sbjct: 493 IHITFREKGPEVTRALFSGLQQVVNYWLFHNGFSIGIGDTIADRGTMA--HIQEQIAIRK 550
Query: 228 QEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHM 287
Q QA D + D A ++E + L+ ++
Sbjct: 551 QNVTQAID--------------DATHDRLKAAPGMTIRESFESRVERELNLARDQNGQYA 596
Query: 288 FRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCA 347
+N++ + N M AGSKG+ + + Q S+C+G Q + R+P
Sbjct: 597 QKNLK--------EDNNVKQMVVAGSKGSFINISQMSVCVGQQ---IVEGRRIPYGFRH- 644
Query: 348 AWNSEKGLNSMPMFSNTLKSIQCYIPHA--VVESSFLTGLNPLECFAHSVANRDSSFSDN 405
++P F+ + P A VE+S+L GL P E F H++A R+
Sbjct: 645 --------RTLPHFTK-----DDFGPEARGFVENSYLRGLTPQEFFFHAMAGREGLIDTA 691
Query: 406 ADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTDKDSSCDSGFQE 458
G + RRL+ + D+ YDGTVRN G+ LIQF Y D D F E
Sbjct: 692 VKTAETGYIQRRLVKALEDVMVCYDGTVRNSLGD-LIQFVYGED---GMDGAFIE 742
>A9Q9T4_9EURO (tr|A9Q9T4) DNA-directed RNA polymerase (Fragment) OS=Verrucula
biatorinaria GN=RPB1 PE=3 SV=1
Length = 999
Score = 119 bits (299), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 117/463 (25%), Positives = 193/463 (41%), Gaps = 66/463 (14%)
Query: 6 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 65
VRV+P S+ +N +P DFDGD ++ ++PQS +R EL +L + +++ Q
Sbjct: 379 VRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEESRAELAQLCMVPLNIVSPQRNA 437
Query: 66 NLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCDK--KLTPPPSIIKAPSRNNSLWSG 123
L+ + QD+L Y + + L+ E+ + + + P P+I+K R W+G
Sbjct: 438 PLMGIVQDTLCGIYKICRRDIFLSREEVMNIMLWVPDWDGVIPQPAIVKPRPR----WTG 493
Query: 124 KQLFSMLLPSNFDY-------------SFPPNGVS---VSDGELTSSFESSGWLRDSECN 167
KQ+ SM+LP + F P G S V+DG+L + +
Sbjct: 494 KQVISMVLPPALNLVRIDGKELQPPGERFAPAGDSGLFVADGQLMFGLFNKKSVGTGSNG 553
Query: 168 IFQRLVERFQDKTLNLLYD-AQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYG 226
I + F +T ++ AQ V+ WL GF E + E+
Sbjct: 554 IIHTIFNEFGHETAMAFFNGAQTVVNYWLLHNGFSIGIGDTVPDVGTV--EKIKREVDRK 611
Query: 227 LQEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRH 286
E E+ Q+ V + L G NV +E +SAAL+ +A
Sbjct: 612 KAEVER---ITQMAVAEDLEALPGM-----NVRE------TFESKVSAALNGARDEAGTA 657
Query: 287 MFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSC 346
+++ + N + M +AGSKG + + Q + +G Q + R+P
Sbjct: 658 TENSLKDI--------NNAIQMARAGSKGTTINISQMTAIVGQQSVEGK---RIPFGFK- 705
Query: 347 AAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNA 406
++P F+ K VE+S+L GL P E F H++A R+
Sbjct: 706 --------YRTLPHFA---KDDYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAV 754
Query: 407 DLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + ++ YDGTVR+ GN ++QF Y D
Sbjct: 755 KTAETGYIQRRLVKALEEVTVKYDGTVRDSRGN-IVQFIYGED 796
>A8PU11_BRUMA (tr|A8PU11) DNA-directed RNA polymerase OS=Brugia malayi
GN=Bm1_34315 PE=3 SV=1
Length = 1943
Score = 119 bits (298), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 127/484 (26%), Positives = 203/484 (41%), Gaps = 95/484 (19%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M+ V++LP S+ +N +P DFDGD ++ ++PQS+ + E++E+ + RQLI
Sbjct: 534 MMGHKVKILPWSTF-RLNLSVTTPYNADFDGDEMNLHLPQSLETKAEVSEIAMVPRQLIT 592
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLC---DKKLTPPPSIIKAPSRN 117
Q+ + ++ + QD+LTA M+ + V + L + L M D K+ P P+I+K
Sbjct: 593 PQANKPVMGIVQDTLTAVRMMTKRDVFIELPRMMDLLMQMPNWDGKV-PQPAILKP---- 647
Query: 118 NSLWSGKQLFSMLLPSNFD----YSFPP----NG-----------VSVSDGELTSSFESS 158
LW+GKQ+F++++P N + +S P NG V + GEL S S
Sbjct: 648 KPLWTGKQVFTLIIPGNVNVLRTHSTHPDDEDNGPYKWISPGDTKVIIEHGELLSGIICS 707
Query: 159 GWLRDSECNIFQRLVERFQDKTLNLLYD-AQKVLCEWLSMTGFXXXXXXXXXXXXXCARE 217
+ S N+ + + Y Q V+ WL G
Sbjct: 708 RTIGRSAGNLLHVVTLELGWEVAAHFYSHIQTVVNAWLLAEGHT---------------- 751
Query: 218 NMMEEISYGLQEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALS 277
I G A+QA Y D +Q++ A +D+ + EK + L
Sbjct: 752 -----IGIGDTIADQAT---------YRD-----IQETIRKAKLDVVEV-IEKAHNDELE 791
Query: 278 EVSVDAFRHMFRNIQSLV------------DKYASKGNAFLTMFKAGSKGNLLKLVQHSM 325
+ R F N+ + + + S+ N F M AGSKG+ + + Q
Sbjct: 792 PTPGNTLRQTFENMVNRILNDARDRTGGSAQRSLSEYNNFKAMVVAGSKGSKINISQVIA 851
Query: 326 CLGLQHSLVRLSYRMPRELSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGL 385
C+G Q+ + R+P ++P F +K VE+S+L GL
Sbjct: 852 CVGQQNVEGK---RIPFGFRH---------RTLPHF---IKDDYGPESKGFVENSYLAGL 896
Query: 386 NPLECFAHSVANRDSSFSDNADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFS 443
P E F H++ R+ G + RRL+ M + YDGTVRN G QL+Q
Sbjct: 897 TPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLG-QLVQLR 955
Query: 444 YDTD 447
Y D
Sbjct: 956 YGED 959
>C1H3Q4_PARBA (tr|C1H3Q4) DNA-directed RNA polymerase OS=Paracoccidioides
brasiliensis (strain ATCC MYA-826 / Pb01) GN=PAAG_05397
PE=3 SV=1
Length = 1748
Score = 119 bits (298), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 118/468 (25%), Positives = 205/468 (43%), Gaps = 67/468 (14%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M++ VRV+P S+ +N +P DFDGD ++ ++PQS AR EL++L + Q+++
Sbjct: 479 MMAHRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEEARAELSQLCMVPLQIVS 537
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCD--KKLTPPPSIIKAPSRNN 118
Q L+ + QD+L Y + V L+ ++ + + + P P+I+K R
Sbjct: 538 PQRNGPLMGIVQDTLCGIYKICRRDVFLSKEQVMNILLWVPDWDGVIPQPAILKPRPR-- 595
Query: 119 SLWSGKQLFSMLLPSNFD--------------YSFPPN-GVSVSDGELTSSFESSGWLRD 163
W+GKQL SM+LP + +S P + GV V GEL S +
Sbjct: 596 --WTGKQLISMVLPPGLNLLRVDRDRAPRSEKFSPPADGGVLVHGGELMYGMFSKKTVGA 653
Query: 164 SECNIFQRLVERFQDKT-LNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEE 222
+ I + + +T +N AQ V+ WL GF + + +
Sbjct: 654 TGGGIIHTIFNEYGPETAMNFFNGAQTVVNYWLLHHGF------------SIGIGDTIPD 701
Query: 223 ISYGLQEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMD-SLNYEKHISAALSEVSV 281
+ +Q+ E A + VD ++ S D+ M+ +E +S AL+
Sbjct: 702 LPT-IQKIENAVRVRKEEVDE----ITASATDNTLEPLPGMNVRETFESKVSRALNNARD 756
Query: 282 DAFRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMP 341
+A ++ + L N + M ++GSKG+++ + Q + +G Q + R+P
Sbjct: 757 EAGTETEKSFKDL--------NNAVQMARSGSKGSIINISQMTAVVGQQSVEGK---RIP 805
Query: 342 RELSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSS 401
++P F+ S + VE+S+L GL P E F H++A R+
Sbjct: 806 FGFK---------YRTLPHFTKDDYSPES---RGFVENSYLRGLTPTEFFFHAMAGREGL 853
Query: 402 FSDNADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + R+L+ + ++ YDGTVRN G+ ++QF Y D
Sbjct: 854 IDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGD-VVQFLYGED 900
>A5H286_9LECA (tr|A5H286) DNA-directed RNA polymerase (Fragment) OS=Vulpicida
pinastri GN=RPB1 PE=3 SV=1
Length = 996
Score = 119 bits (298), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 111/461 (24%), Positives = 199/461 (43%), Gaps = 59/461 (12%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M+ SVRV+P S+ +N SP DFDGD ++ ++PQS R E+N+L + +++
Sbjct: 384 MMGHSVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCMVPLNIVS 442
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCD--KKLTPPPSIIKAPSRNN 118
Q L+ + QD+L Y + V L ++ + + + P P+I+K
Sbjct: 443 PQRNGPLMGIVQDTLCGIYKMCRRDVFLTKEQVMNILLWVPDWDGVIPQPAIVKPL---- 498
Query: 119 SLWSGKQLFSMLLPSNFDY------SFPP---NGVSVSDGELTSSFESSGWLRDSECNIF 169
++W+GKQ+ S+++P+ + F P +G+ +S GEL + + S +
Sbjct: 499 AMWTGKQILSLVIPTGLNLLRGSEEGFSPLNDDGLLISGGELMYGLLNKKVVGASGGGVI 558
Query: 170 QRLV-ERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGLQ 228
+ E+ + + AQ V+ WL GF A+ +E +
Sbjct: 559 HIVFNEKGPEAAMTFFNGAQTVVNYWLLHNGFSIGIGDTIPDRDTIAQ---IERAVIAQK 615
Query: 229 EAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHMF 288
E A S + + +++ +++ +E +S AL++ DA
Sbjct: 616 EEVTAIT------------ASATANELESLPGMNVRE-TFESKVSKALNKARDDA----- 657
Query: 289 RNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCAA 348
++ +K N M ++GSKG+ + + Q + +G Q + R+P
Sbjct: 658 ---GTVTEKSLKDLNNATQMARSGSKGSTINISQMTAVVGQQSVEGK---RIPFGFK--- 708
Query: 349 WNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNADL 408
++P F+ S + VE+S+L GL P E F H++A R+
Sbjct: 709 ------YRTLPHFTKDDYSPES---RGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKT 759
Query: 409 P--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + D+ YDGTVRN G+ ++QF Y D
Sbjct: 760 AETGYIQRRLVKALEDVMAKYDGTVRNSLGD-IVQFVYGED 799
>E6R8Q5_CRYGW (tr|E6R8Q5) DNA-directed RNA polymerase OS=Cryptococcus gattii
serotype B (strain WM276 / ATCC MYA-4071) GN=CGB_F6200C
PE=3 SV=1
Length = 1463
Score = 119 bits (298), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 130/498 (26%), Positives = 207/498 (41%), Gaps = 106/498 (21%)
Query: 6 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 65
VRV P + +N C+P DFDGD ++ ++PQ+ AR E EL+++ + L+ ++G
Sbjct: 489 VRVRPWRTF-RLNECVCNPYNADFDGDEMNLHVPQTEEARTEALELMSVKKNLVTPRNGE 547
Query: 66 NLLSLSQDSLTAAYMLMEDGVLLNLYEIQQL-QMLCDKKLT---PPPSIIKAPSRNNSLW 121
+++ QD +TAAY+L + + Q+ L D L PPP+I K P R LW
Sbjct: 548 PIIAAIQDFITAAYLLSRRDRFYDRQQFTQIASYLGDANLKIEMPPPTIWK-PVR---LW 603
Query: 122 SGKQLFSMLLPSNFDYS--------------------FPPNGVSVSDGELTSSFESSGWL 161
+GKQ+F++L+ N + FPP+ +S +DG L +
Sbjct: 604 TGKQIFNLLMRPNKESKVLVNLEAKCRTLVDPAKEDRFPPD-MSPNDGYLV--------I 654
Query: 162 RDSE--CNIFQR---------------LVERFQDKTLNLLYDAQKVLCEWLSMTGFXXXX 204
++SE C +F + L + ++ + K+ WL+ GF
Sbjct: 655 QNSEIMCGVFDKNTVGDGKKNSVFGVILRDYGPEEAAQAMNRLAKIAARWLANIGFSLGI 714
Query: 205 XXXXXXXXXCARENMMEEISYGLQEAEQACDFNQLLVDHYCDFLS-GSLQDSDNVASIDM 263
A ++ E +YG CD + D G L+ N D
Sbjct: 715 NDVIPGPILHASKDARVEKAYG------ECDV-------FIDLAKRGKLE---NAPGCDQ 758
Query: 264 DSLNYEKHISAALSEVSVDAFRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQH 323
++ E IS LS+V + + + S+ NA L M GSKG+++ + Q
Sbjct: 759 EA-TLESKISKTLSDVR--------EAVGKICMQELSRHNAPLIMATCGSKGSVINVAQM 809
Query: 324 SMCLGLQ---HSLVRLSYRMPRELSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESS 380
C+G Q S VR ++ S+P F K+ V +S
Sbjct: 810 VACVGQQIIGGSRVRNGFQD---------------RSLPHFRKKSKNPPS---KGFVRNS 851
Query: 381 FLTGLNPLECFAHSVANRDSSFSDNADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQ 438
F +GL P E H+++ R+ G + RRLM + DL YD +VRN G
Sbjct: 852 FFSGLTPPEFLFHAMSGREGLVDTAVKTAETGYMARRLMKALEDLCTHYDLSVRNSVGG- 910
Query: 439 LIQFSYDTDK-DSSCDSG 455
++QF Y D D +C G
Sbjct: 911 IVQFQYGDDMLDPACLEG 928
>Q0PPZ5_9LECA (tr|Q0PPZ5) DNA-directed RNA polymerase (Fragment) OS=Pleopsidium
chlorophanum GN=RPB1 PE=3 SV=1
Length = 1011
Score = 119 bits (298), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 115/462 (24%), Positives = 197/462 (42%), Gaps = 61/462 (13%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M+ VRV+P S+ +N SP DFDGD ++ ++PQS R E+N+L + +++
Sbjct: 387 MMGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCMVPLNIVS 445
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCD--KKLTPPPSIIKAPSRNN 118
Q L+ + QD+L Y + V L ++ + + + P P+I+K +
Sbjct: 446 PQRNGPLMGIVQDTLCGVYKMCRRDVFLTKEQVMNILLWVPDWDGVIPQPAILKPHPK-- 503
Query: 119 SLWSGKQLFSMLLPSNFDY------SFPP---NGVSVSDGELTSSFESSGWLRDSECNIF 169
W+GKQ+ S+++P + P +G+ V GEL S + S I
Sbjct: 504 --WTGKQIISLVIPKGLNLIRGSEEGLSPANDDGLFVHGGELMYGLFSKKSVGASGGGII 561
Query: 170 QRLV-ERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCAR-ENMMEEISYGL 227
+ E+ + +N AQ V+ WL GF + EN + + +
Sbjct: 562 HIIFNEKGPEVAMNFFNGAQTVVNYWLLHNGFSIGIGDTIPDRNTIQQIENAVNKHKADV 621
Query: 228 QEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHM 287
E ++ N+L + L G NV +E +S AL+ +A
Sbjct: 622 AEITRSATENEL------EPLPGM-----NVRE------TFESKVSKALNAARDEAGAET 664
Query: 288 FRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCA 347
++++ L N + M ++GSKG+ + + Q + +G Q + R+P
Sbjct: 665 EKSLKDL--------NNAIQMARSGSKGSTINISQMTAVVGQQSVEGK---RIPFGFK-- 711
Query: 348 AWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNAD 407
++P F+ S + VE+S+L GL P E F H++A R+
Sbjct: 712 -------YRTLPHFTKDDYSPES---RGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVK 761
Query: 408 LP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + D+ YDGTVRN G+ ++QF Y D
Sbjct: 762 TAETGYIQRRLVKALEDVMAKYDGTVRNSLGD-IVQFVYGED 802
>A5E7R0_LODEL (tr|A5E7R0) DNA-directed RNA polymerase OS=Lodderomyces
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 /
NBRC 1676 / NRRL YB-4239) GN=LELG_05649 PE=3 SV=1
Length = 1450
Score = 119 bits (298), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 123/468 (26%), Positives = 194/468 (41%), Gaps = 86/468 (18%)
Query: 17 INPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLT 76
+N C+P DFDGD ++ ++PQ+ AR E L+ + L+ +SG +++ +QD +T
Sbjct: 502 LNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPKSGEPIIAATQDFIT 561
Query: 77 AAYMLMEDGVLLNLYE-IQQLQMLCDKKL---TPPPSIIKAPSRNNSLWSGKQLFSMLLP 132
+Y++ L+ +Q L M+ D + PPP+I K LW+GKQ+FS+L+
Sbjct: 562 GSYLISHKDTFLDRASLVQLLSMMSDADIHFDIPPPAIFKPV----MLWTGKQVFSLLIK 617
Query: 133 SN------------------FDYSFPPNGVSVSDGELTSSFESSGWLRDSECNIFQRLVE 174
N FPP +S +DG + +R S+ ++
Sbjct: 618 PNKQSKVIINLNAKNKTCHPAPKGFPPE-MSTNDGYVV--------IRGSQ------ILS 662
Query: 175 RFQDKTLNLLYDAQK--VLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGLQEAEQ 232
DK+ L D +K V L G CAR S G+ +
Sbjct: 663 GLMDKS--TLGDGKKDSVFYVILRDYGPHEAAAAMNRMAKLCARYLGNRGFSIGINDVTP 720
Query: 233 ACDFNQ---LLVDHY---CD-----FLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSV 281
A + Q L+V+ CD F G L+ + E I LS+V
Sbjct: 721 ATELRQKKELMVEQAYLKCDQLIDLFNRGKLETQPGCN----EEETLEAKIGGLLSKVRE 776
Query: 282 DAFRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMP 341
+ R + SL NA L M GSKG+++ + Q +G Q + +R+P
Sbjct: 777 EVGNECIRELDSL--------NAPLIMATCGSKGSIVNVSQMVAVVGQQ---IISGHRVP 825
Query: 342 RELSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSS 401
S+P F+ K+ Q V +SF +GL+P E H+++ R+
Sbjct: 826 DGFQD---------RSLPHFTKNSKTPQS---KGFVRNSFFSGLSPPEFLFHAISGREGL 873
Query: 402 FSDNADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G ++RRLM + DL YD TVRN N ++QF+Y D
Sbjct: 874 VDTAVKTAETGYMSRRLMKSLEDLSAQYDDTVRN-SSNGIVQFTYGGD 920
>Q6CBQ3_YARLI (tr|Q6CBQ3) DNA-directed RNA polymerase OS=Yarrowia lipolytica
(strain CLIB 122 / E 150) GN=YALI0C16566g PE=3 SV=2
Length = 1750
Score = 119 bits (298), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 115/462 (24%), Positives = 204/462 (44%), Gaps = 60/462 (12%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M++ VRV+P S+ +N SP DFDGD ++ ++PQS R EL++L + Q+++
Sbjct: 460 MMAHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCMVPLQIVS 518
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCDK--KLTPPPSIIKAPSRNN 118
QS + ++ + QD+L + ++ + + + P P+I+K
Sbjct: 519 PQSNKPVMGIVQDTLCGVRKMTIRDSFIDYDMVMNILFWIPNWDGVVPTPAILKP----K 574
Query: 119 SLWSGKQLFSMLLPSN-----FDYSFP-----PNGVSVSDGELTSSFESSGWLRDSECNI 168
LW+GKQ+ SM +P FD P NG+ + DG++ + + +
Sbjct: 575 PLWTGKQMVSMCIPKGIHLQRFDDQNPITCPKDNGMYIIDGQIMWGVVDKKTIGATGGGL 634
Query: 169 FQRLV-ERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGL 227
++ E+ N QKV+ WL GF A M +++ +
Sbjct: 635 VHTIMREKGSAVCCNFFGTIQKVVNFWLLHYGF------SIGIGDTIADSATMRDVTETI 688
Query: 228 QEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHM 287
+EA++ +++++ + + L+ A + M ++E ++S L++ A R
Sbjct: 689 EEAKKKV--KEIILEAHANTLTAE-------AGMTMRE-SFEHNVSRVLNQARDTAGRSA 738
Query: 288 FRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCA 347
+++ L N M AGSKG+ + + Q S C+G Q +V R+P +
Sbjct: 739 EMSLKDL--------NNVKQMVVAGSKGSFINISQMSACVGQQ--MVE-GKRVPFGFAD- 786
Query: 348 AWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNAD 407
++P F S + +E+S+L GL P E F H++A R+
Sbjct: 787 --------RTLPHFCKDDYSPES---KGFIENSYLRGLTPQEFFFHAMAGREGLIDTAVK 835
Query: 408 LP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + D+ YDGTVRN G+ +IQF Y D
Sbjct: 836 TAETGYIQRRLVKALEDVMVQYDGTVRNSLGD-VIQFVYGED 876
>A5H2F5_9LECA (tr|A5H2F5) DNA-directed RNA polymerase (Fragment) OS=Erioderma
verruculosum GN=RPB1 PE=3 SV=1
Length = 995
Score = 119 bits (298), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 116/463 (25%), Positives = 200/463 (43%), Gaps = 63/463 (13%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M+ VRV+P S+ +N SP DFDG ++ ++PQS R E+N+L + +++
Sbjct: 370 MMGHRVRVMPYSTF-RLNLSVTSPYNADFDGGEMNLHVPQSEETRAEINQLCMVPLNIVS 428
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCDK--KLTPPPSIIKAPSRNN 118
Q L+ + QD+L Y + V L+ + + + L P P+I+K +
Sbjct: 429 PQRNGPLMGIVQDTLCGIYKICRRDVFLSKEQAMNILLWVPDWDGLLPQPAILKPRPK-- 486
Query: 119 SLWSGKQLFSMLLPSNFDYSFP---------PNGVSVSDGELTSSFESSGWLRDSECNIF 169
W+GKQ+ S+++P + + P +G+ VS G+L S + S I
Sbjct: 487 --WTGKQIISLVIPPGLNLNRPVSEGFSPVNDDGLLVSGGKLMYGLLSKKSVGASGSGIV 544
Query: 170 QRLV-ERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGL- 227
+ E+ + + AQ V+ WL GF N +++I +
Sbjct: 545 HIIFNEKGPEAAMKFFNGAQTVVNFWLLHNGFSIGIGDT------IPDRNTIQQIEDAVN 598
Query: 228 QEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHM 287
++ E + + ++ + L G NV +E +S AL++ DA
Sbjct: 599 KQKEDVAEITRSATENELEPLPGM-----NVRE------TFESKVSKALNKARDDA---- 643
Query: 288 FRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCA 347
++ +K N M ++GSKG+ + + Q + +G Q + R+P
Sbjct: 644 ----GTVTEKSLKDLNNATQMARSGSKGSTINISQMTAVVGQQSVEGK---RIPFGFK-- 694
Query: 348 AWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNA- 406
++P F+ S + VE+S+L GL P E F H++A R+ F D A
Sbjct: 695 -------YRTLPHFTKDDYSPES---RGFVENSYLRGLTPTEFFFHAMAGRE-GFIDTAV 743
Query: 407 --DLPGTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + D+ YDGTVRN G+ ++QF Y D
Sbjct: 744 KTAETGYIQRRLVKALEDVMAKYDGTVRNSLGD-IVQFVYGED 785
>A9X969_9LECA (tr|A9X969) DNA-directed RNA polymerase (Fragment) OS=Porpidia
speirea GN=RPB1 PE=3 SV=1
Length = 615
Score = 119 bits (298), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 113/462 (24%), Positives = 197/462 (42%), Gaps = 71/462 (15%)
Query: 6 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 65
VRV+P S+ +N SP DFDGD ++ ++PQS R E+N+L + +++ Q
Sbjct: 2 VRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCMVPLNIVSPQRNG 60
Query: 66 NLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCD--KKLTPPPSIIKAPSRNNSLWSG 123
L+ + QD+L Y + V L ++ + + + P P+I+K ++ W+G
Sbjct: 61 PLMGIVQDTLAGIYKMCRRDVFLTKEQVMNILLWVPDWDGVIPQPAILKPRAK----WTG 116
Query: 124 KQLFSMLLPSNFDYSF-------PPN--GVSVSDGELTSSFESSGWLRDSECNIFQRLV- 173
KQ+ S+++P + + P N G+ VS GEL S + + + +
Sbjct: 117 KQIISLVVPPGLNLTRVSEEGLCPINDDGLMVSGGELMYGLFSKKSVGAASGGVIHIIFN 176
Query: 174 ERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGL-QEAEQ 232
E+ + N AQ V+ WL GF N +++I + ++ E
Sbjct: 177 EKGPEAATNFFNGAQTVVNHWLLHNGF------SIGIGDTIPDRNTIQQIEDAVSKQKED 230
Query: 233 ACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHMFRNIQ 292
+ + ++ + L G NV +E +S AL++ DA +++
Sbjct: 231 VAEITRSATENELEPLPGM-----NVRE------TFESKVSKALNKARDDAGTVTEESLK 279
Query: 293 SLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVR-----LSYRMPRELSCA 347
L N + M ++GSKG+ + + Q + +G Q + YR
Sbjct: 280 DL--------NNAIQMARSGSKGSTINISQMTAVVGQQSVEGKXIPFGFKYR-------- 323
Query: 348 AWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNAD 407
++P F+ S + VE+S+L GL P E F H++A R+
Sbjct: 324 ---------TLPHFTKDDYSPES---RGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVK 371
Query: 408 LP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + D+ YDGTVRN G+ ++QF Y D
Sbjct: 372 TAETGYIQRRLVKALEDVMAKYDGTVRNSLGD-IVQFVYGED 412
>I7A065_9ASCO (tr|I7A065) DNA-directed RNA polymerase (Fragment)
OS=Aciculoconidium aculeatum PE=3 SV=1
Length = 872
Score = 119 bits (298), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 120/466 (25%), Positives = 204/466 (43%), Gaps = 68/466 (14%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M++ V+V+P S+ +N SP DFDGD ++ ++PQS R EL+++ A+ Q+++
Sbjct: 268 MMAHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSPETRSELSQICAVPLQIVS 326
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLY-EIQQLQMLCD-----KKLTPPPSIIKAP 114
QS + ++ + QD+L + L ++Y E Q+ +C + PPP+I+K
Sbjct: 327 PQSNKPVMGIVQDTLCGVRKM----TLRDIYIEYDQVMNICYWIPNWDGVIPPPAIVKP- 381
Query: 115 SRNNSLWSGKQLFSMLLPSN-----FDYS---FPPN--GVSVSDGELTSSFESSGWLRDS 164
LW+GKQL SM +P FD PN G+ + DGE+ + +
Sbjct: 382 ---KPLWTGKQLLSMAIPKGIHLQRFDGGKDMLSPNDTGMLIVDGEIMFGVVDKKTVGAT 438
Query: 165 ECNIFQRLV-ERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEI 223
+ ++ E+ L QKV+ WL GF A + I
Sbjct: 439 GGGLIHTVMREKGPQVCAKLFSSIQKVVNYWLLHNGF------SIGIGDTIADAGTXKTI 492
Query: 224 SYGLQEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDA 283
+ +QEA++ ++++D + Q+ ++E ++S L++ A
Sbjct: 493 TSTIQEAKEKV--XEIILD--------AQQNRXEPEPGMTLRESFEHNVSRILNQARDTA 542
Query: 284 FRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRE 343
R N++ L N M +GSKG+ + + Q S +G Q + R+P
Sbjct: 543 GRSAEMNLKDL--------NNVKQMVTSGSKGSFINISQMSAXVGQQ---IVEGKRIPFG 591
Query: 344 LSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFS 403
S ++P F+ S + VE+S+L GL P E F H++A R+
Sbjct: 592 FSD---------RTLPHFTKDDYSPES---KGFVENSYLRGLTPQEFFFHAMAGREGLID 639
Query: 404 DNADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + D+ YDGT RN G+ ++QF Y D
Sbjct: 640 TAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGD-IVQFVYGED 684
>A5H277_9LECA (tr|A5H277) DNA-directed RNA polymerase (Fragment)
OS=Flavopunctelia flaventior GN=RPB1 PE=3 SV=1
Length = 995
Score = 119 bits (298), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 110/461 (23%), Positives = 200/461 (43%), Gaps = 59/461 (12%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M+ VRV+P S+ +N SP DFDGD ++ ++PQS R E+N+L + +++
Sbjct: 383 MMGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCMVPLNIVS 441
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCD--KKLTPPPSIIKAPSRNN 118
Q L+ + QD+L Y + V L ++ + + + P P+I+K
Sbjct: 442 PQRNGPLMGIVQDTLCGIYKMCRRDVFLTKEQVMNILLWVPDWDGVIPQPAIVKPL---- 497
Query: 119 SLWSGKQLFSMLLPSNFDY------SFPP---NGVSVSDGELTSSFESSGWLRDSECNIF 169
++W+GKQ+ S+++P+ + F P +G+ +S GEL + + S +
Sbjct: 498 AMWTGKQILSLVIPTGLNLLRGNEEGFSPLNDDGLLISSGELMYGLLAKKTVGASGGGVI 557
Query: 170 QRLV-ERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGLQ 228
+ E+ + + AQ V+ WL GF + +Q
Sbjct: 558 HIVFNEKGPEAAMTFFNGAQTVVNYWLLHNGFSIGIGDTIPD-------------RHTIQ 604
Query: 229 EAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHMF 288
+ E A + + V S + + +++ +++ +E +S AL++ DA
Sbjct: 605 QIENAVNNQKAEVLEITR--SATENELESLPGMNVRE-TFESKVSKALNKARDDA----- 656
Query: 289 RNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCAA 348
++ +K N M ++GSKG+ + + Q + +G Q + R+P
Sbjct: 657 ---GAVTEKSLKDLNNATQMARSGSKGSTINISQMTAVVGQQSVEGK---RIPFGFK--- 707
Query: 349 WNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNADL 408
++P F+ S + VE+S+L GL P E F H++A R+
Sbjct: 708 ------YRTLPHFTKDDYSPES---RGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKT 758
Query: 409 P--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + D+ YDGTVRN G+ ++QF Y D
Sbjct: 759 AETGYIQRRLVKALEDVMAKYDGTVRNSLGD-IVQFVYGED 798
>M7X4L8_RHOTO (tr|M7X4L8) DNA-directed RNA polymerase III subunit RPC1
OS=Rhodosporidium toruloides NP11 GN=RHTO_05722 PE=4
SV=1
Length = 1418
Score = 119 bits (298), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 128/503 (25%), Positives = 208/503 (41%), Gaps = 88/503 (17%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
++S V+V P + +N C+P DFDGD ++ ++PQ+ AR E +L+ + R L+
Sbjct: 478 ILSHRVKVRPWRTF-RLNECVCTPYNADFDGDEMNLHVPQTEEARTEAFQLMNIKRNLVT 536
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYE-IQQLQMLCDKKLT---PPPSIIKAPSR 116
++G +++ +QD +T Y++ N E +Q L D +L PPP+I+K P R
Sbjct: 537 PRNGEPIIAATQDFITGCYLITRRDTFFNRQEFVQMCSYLQDAELEIELPPPTILK-PER 595
Query: 117 NNSLWSGKQLFSMLLPSN----------------------FDYSFPPNGVSVSDGEL--- 151
LW+GKQ+F++L+ N FD S+ PN +SV+DG L
Sbjct: 596 ---LWTGKQVFNVLMRPNKDSPVNVNLECKNKTFAKPSTEFDMSY-PNFMSVNDGYLVVQ 651
Query: 152 -----TSSFESSGWLRDSECNIFQRLVERF-QDKTLNLLYDAQKVLCEWLSMTGFXXXXX 205
+ F+ S ++ ++F + F +D + K+ WL+ GF
Sbjct: 652 NSEIISGVFDKSTVGDGNKKSVFAVIQRDFGEDHAAKCMNRMAKLCARWLANKGFSIGIS 711
Query: 206 XXXXXXXXCARENMMEEISYGLQEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDS 265
A ++ + +Y QA ++ + + GS +
Sbjct: 712 DVTPGERLKAEKDDLVRKAY-----RQADEYIEKAARGKLECQPGSNLEQ---------- 756
Query: 266 LNYEKHISAALSEVSVDAFRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSM 325
E IS LS V + + S+ NA L M GSKG+ + + Q
Sbjct: 757 -TLESLISGDLSRVR--------DQVGEICMTELSRNNAPLIMATCGSKGSKINVSQMVA 807
Query: 326 CLGLQHSLVRLSYRMPRELSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGL 385
C+G Q + +R+P S+P F K + V +SF +GL
Sbjct: 808 CVGQQ---IIAGHRVPNGFQD---------RSLPHFP---KGAIDPLAKGFVSNSFYSGL 852
Query: 386 NPLECFAHSVANRDSSFSDNADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFS 443
E H+++ R+ G + RRLM + DL YD +VRN G ++QF
Sbjct: 853 RATEFLFHAISGREGLVDTAVKTAETGYMARRLMKALEDLSSRYDRSVRNATGG-VVQFI 911
Query: 444 YDTDKDSSCDSGFQEGTVGGEPV 466
Y D D EG G+PV
Sbjct: 912 YG---DDGLDPANLEGD--GKPV 929
>I7B5B3_9ASCO (tr|I7B5B3) DNA-directed RNA polymerase (Fragment) OS=Yamadazyma
mexicana PE=3 SV=1
Length = 863
Score = 119 bits (297), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 118/469 (25%), Positives = 207/469 (44%), Gaps = 76/469 (16%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M++ V+V+P S+ +N SP DFDGD ++ ++PQS R EL+++ A+ Q+++
Sbjct: 266 MMAHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSPETRAELSQICAVPLQIVS 324
Query: 61 GQSGRNLLSLSQDSLTAAYMLM-------EDGVLLNLYEIQQLQMLCDKKLTPPPSIIKA 113
QS + ++ + QD+L + D V+ LY I + PPP+++K
Sbjct: 325 PQSNKPVMGIVQDTLCGIRKMTLRDSFIEYDQVMNMLYWIPTWD-----GVIPPPAVMKP 379
Query: 114 PSRNNSLWSGKQLFSMLLPSNF-------DYSFP-PNGVSVSDGELTSSFESSGWLRDSE 165
LW+GKQL SM +P + S P NG+ + DGE+ + +
Sbjct: 380 ----KPLWTGKQLLSMAIPKGIHLQRLESNLSCPNDNGMLIVDGEIMFGVVDKKTVGATG 435
Query: 166 CNIFQRLV-ERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEIS 224
+ ++ E+ L + QKV+ WL GF A + M+ ++
Sbjct: 436 GGLIHTVMREKGPQVCAQLFSNIQKVVNYWLLHNGF------SIGIGDTIADSDTMKTVT 489
Query: 225 YGLQEAEQACDFNQLLVDHYCDFLSG----SLQDSDNVASIDMDSLNYEKHISAALSEVS 280
++EA+ +++++ + L +L++S +E ++S L++
Sbjct: 490 TTIEEAK--AKVQEIILNAQRNKLEPEPGMTLRES------------FEHNVSRVLNQAR 535
Query: 281 VDAFRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRM 340
A R +++ L N M +GSKG+ + + Q S C+G Q + R+
Sbjct: 536 DTAGRSAEMSLKDL--------NNVKQMVVSGSKGSFINISQMSACVGQQ---IVEGKRI 584
Query: 341 PRELSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDS 400
P + ++P F+ S + VE+S+L GL P E F H++A R+
Sbjct: 585 PFGFAD---------RTLPHFTKDDYSPES---KGFVENSYLRGLTPQEFFFHAMAGREG 632
Query: 401 SFSDNADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + D+ YDGT RN G+ +IQF Y D
Sbjct: 633 LIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGD-IIQFVYGED 680
>A5H278_9LECA (tr|A5H278) DNA-directed RNA polymerase (Fragment) OS=Hypotrachyna
caraccensis GN=RPB1 PE=3 SV=1
Length = 996
Score = 119 bits (297), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 110/461 (23%), Positives = 201/461 (43%), Gaps = 59/461 (12%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M+ VRV+P S+ +N SP DFDGD ++ ++PQS R E+N+L + +++
Sbjct: 384 MMGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCMVPLNIVS 442
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCD--KKLTPPPSIIKAPSRNN 118
Q L+ + QD+L Y + V L ++ + + + P P+I+K
Sbjct: 443 PQRNGPLMGIVQDTLCGIYKMCRRDVFLTKEQVMNILLWVPDWDGVIPQPAIVKPL---- 498
Query: 119 SLWSGKQLFSMLLPSNFDY------SFPP---NGVSVSDGELTSSFESSGWLRDSECNIF 169
++W+GKQ+ S+++P+ + F P +G+ +S GEL + + S +
Sbjct: 499 AMWTGKQILSLVIPTGLNLLRGSEEGFSPLNDDGLLISGGELMYGLLNKKIVGASPGGVI 558
Query: 170 QRLV-ERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGLQ 228
+ E+ + ++ AQ V+ WL GF + +Q
Sbjct: 559 HIVFNEKGPEAAMDFFNGAQTVVNYWLLHNGFSIGIGDTIPD-------------RHTIQ 605
Query: 229 EAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHMF 288
+ E A + + V S + + +++ +++ +E +S AL++ DA
Sbjct: 606 QIENAVNNQKAEVLEITR--SATENELESLPGMNVRE-TFESKVSKALNKARDDA----- 657
Query: 289 RNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCAA 348
++ +K N M ++GSKG+ + + Q + +G Q + R+P
Sbjct: 658 ---GTVTEKSLKDLNNATQMARSGSKGSTINISQMTAVVGQQSVEGK---RIPFGFK--- 708
Query: 349 WNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNADL 408
++P F+ S + VE+S+L GL P E F H++A R+
Sbjct: 709 ------YRTLPHFTKDDYSPES---RGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKT 759
Query: 409 P--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + D+ YDGTVRN G+ ++QF Y D
Sbjct: 760 AETGYIQRRLVKALEDVMAKYDGTVRNSLGD-IVQFVYGED 799
>A9Q9P4_9EURO (tr|A9Q9P4) DNA-directed RNA polymerase (Fragment) OS=Staurothele
areolata GN=RPB1 PE=3 SV=1
Length = 999
Score = 119 bits (297), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 119/463 (25%), Positives = 194/463 (41%), Gaps = 66/463 (14%)
Query: 6 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 65
VRV+P S+ +N +P DFDGD ++ ++PQS +R EL +L + +++ Q
Sbjct: 379 VRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEESRAELAQLCMVPLNIVSPQRNG 437
Query: 66 NLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCD--KKLTPPPSIIKAPSRNNSLWSG 123
L+ + QD+L Y + V L+ E+ + + + P P+I K R W+G
Sbjct: 438 PLMGIVQDTLCGIYKICRRDVFLSREEVMNIMLWVPDWDGVIPQPAIFKPRPR----WTG 493
Query: 124 KQLFSMLLPSNFDY-------SFPP---------NGVSVSDGELTSSFESSGWLRDSECN 167
KQ+ SM+LP + S PP +G+ VSDG+L + +
Sbjct: 494 KQVISMVLPPALNLVRIDGKPSQPPGERFAPAGDSGLFVSDGQLMFGLFNKKSVGTGSNG 553
Query: 168 IFQRLVERFQDKT-LNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYG 226
I + F +T ++ AQ V+ WL GF E + E+
Sbjct: 554 IIHTIFNEFGHETAMSFFNGAQTVVNYWLLHNGFSIGIGDTVPDVGTV--EKIKSEVDKK 611
Query: 227 LQEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRH 286
E E+ Q V + L G NV +E +SAAL+ +A
Sbjct: 612 KAEVER---ITQSAVAEDLEALPGM-----NVRE------TFESKVSAALNGARDEAGTA 657
Query: 287 MFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSC 346
+++ + N + M +AGSKG+ + + Q + +G Q + R+P
Sbjct: 658 TENSLKDI--------NNAIQMARAGSKGSTINISQMTAIVGQQSVEGK---RIPFGFK- 705
Query: 347 AAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNA 406
++P F+ K VE+S+L GL P E F H++A R+
Sbjct: 706 --------YRTLPHFA---KDDYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAV 754
Query: 407 DLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + ++ YDGTVR+ GN ++QF Y D
Sbjct: 755 KTAETGYIQRRLVKALEEVTVKYDGTVRDSRGN-IVQFIYGED 796
>A1YIC0_9FUNG (tr|A1YIC0) DNA-directed RNA polymerase (Fragment) OS=Catenaria
anguillulae GN=RPB1 PE=3 SV=1
Length = 1020
Score = 119 bits (297), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 122/474 (25%), Positives = 199/474 (41%), Gaps = 80/474 (16%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M+ V+V+P S+ +N SP DFDGD ++ ++PQSV AR E+ +L + Q+++
Sbjct: 391 MMGHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSVEARAEIQQLCMVPLQIVS 449
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLC---DKKLTPPPSIIKAPSRN 117
QS + ++ + QD+L ++ + L M D + PPP+I+K
Sbjct: 450 PQSNKPVMGIVQDTLCGITKFTRRDTFMDRAMVMNLLMWVPGWDGNM-PPPAIVKP---- 504
Query: 118 NSLWSGKQLFSMLLPSNFDYSF---PPNG-----------VSVSDGELTSSFESSGWLRD 163
+W+GKQ+ S+++P +F P+G V V DGEL + +
Sbjct: 505 KPMWTGKQIMSLIIPKVNAVTFHSTHPDGETDLLSPGDTRVIVEDGELVAGIVCKKTVGT 564
Query: 164 SECNIFQ-RLVERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEE 222
+ + +E + LL Q ++ WL TGF A + +
Sbjct: 565 AAGGLVHVSWMEHGPEAAKALLNGCQTIVNYWLLHTGF------SVGIGDTVADDETTDL 618
Query: 223 ISYGLQEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVD 282
I+ + +A Q N+++ + D L E+ L E + +
Sbjct: 619 INKMIFDARQRV--NEIIGEAQSDKL--------------------ERQTGMTLRE-TFE 655
Query: 283 AFRHMFRNIQSLVDKYASKG-------NAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVR 335
A ++ R + V+K N M AGSKG+ + + Q S C+G Q+ +
Sbjct: 656 A--NVNRTLNEAVNKAGGAAAKSFKVHNNVKHMVVAGSKGSNINISQMSACVGQQNVEGK 713
Query: 336 LSYRMPRELSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSV 395
R+P S+P F S + VE+S+L GLNP E F H++
Sbjct: 714 ---RIPFGFQ---------YRSLPHFVKDDYSPES---RGFVENSYLRGLNPQEFFFHAM 758
Query: 396 ANRDSSFSDNADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
R+ G + RRL+ + D+ YDGTVRN GN +IQF Y D
Sbjct: 759 GGREGLIDTAVKTAETGYIQRRLVKALEDIMVKYDGTVRNAQGN-IIQFLYGED 811
>C3U0B2_9EURO (tr|C3U0B2) DNA-directed RNA polymerase (Fragment) OS=Arachnomyces
glareosus GN=RPB1 PE=3 SV=1
Length = 993
Score = 119 bits (297), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 120/463 (25%), Positives = 198/463 (42%), Gaps = 67/463 (14%)
Query: 6 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 65
VRV+P S+ +N +P DFDGD ++ ++PQS AR EL EL + +++ Q
Sbjct: 377 VRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSQEARAELRELCLVPLNIVSPQRNG 435
Query: 66 NLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCD--KKLTPPPSIIKAPSRNNSLWSG 123
L+ + QD+L Y + V L E+ + + + P P+IIK +R W+G
Sbjct: 436 PLMGIVQDTLCGIYKICRRDVFLTRDEVMNILLWVPDWDGVIPEPAIIKPRAR----WTG 491
Query: 124 KQLFSMLLPSNFDY------------SFPP---NGVSVSDGELTSSFESSGWLRDSECNI 168
KQL S++LP + F P NGV V G+L S + + I
Sbjct: 492 KQLISLVLPQGLNLLRVDKDKASLVEKFSPLNDNGVLVHGGQLMYGMFSKKTVGATGGGI 551
Query: 169 FQRLVERF-QDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGL 227
+ + D L+ AQ V+ WL GF + + + S L
Sbjct: 552 IHTIYNEYGHDVALSFFNGAQTVVNYWLLHNGFSIGIG------------DTIPDPSTIL 599
Query: 228 QEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMD-SLNYEKHISAALSEVSVDAFRH 286
+ E+A + VD ++ S D+ A M+ +E +S AL+ +A
Sbjct: 600 K-IEEAVRVKKEEVDS----ITASATDNTLEALPGMNVRETFESKVSRALNNARDEAGTE 654
Query: 287 MFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSC 346
+ ++ L N + M ++GSKG+ + + Q + +G Q + R+P
Sbjct: 655 TEKGLKDL--------NNAIQMARSGSKGSTINISQMTAVVGQQSVEGK---RIPFGFK- 702
Query: 347 AAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNA 406
++P F+ S + VE+S+L GL P E F H++A R+
Sbjct: 703 --------YRTLPHFTKDDYSPES---RGFVENSYLRGLTPTEFFFHAMAGREGLIDTAV 751
Query: 407 DLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + R+L+ + ++ YDGTVRN G+ ++QF Y D
Sbjct: 752 KTAETGYIQRKLVKALEEIMVKYDGTVRNSLGD-VVQFLYGED 793
>D4D6M6_TRIVH (tr|D4D6M6) DNA-directed RNA polymerase OS=Trichophyton verrucosum
(strain HKI 0517) GN=TRV_02753 PE=3 SV=1
Length = 1744
Score = 119 bits (297), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 123/474 (25%), Positives = 200/474 (42%), Gaps = 68/474 (14%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M+S VRV+P S+ +N +P DFDGD ++ ++PQS AR ELN+L + +++
Sbjct: 472 MMSHRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEEARAELNQLCLVPLNIVS 530
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCD--KKLTPPPSIIKAPSRNN 118
Q L+ + QD+L Y + V L ++ + + + P P+I+K R
Sbjct: 531 PQRNGPLMGIVQDTLCGIYKICRRDVFLTKEQVMNVLLWVPDWDGVLPQPAILKPRPR-- 588
Query: 119 SLWSGKQLFSMLLPSNFDY------------SFPP---NGVSVSDGELTSSFESSGWLRD 163
WSGKQ+ SM+LPS + F P GV V GEL S +
Sbjct: 589 --WSGKQMISMVLPSGLNLLRIDKDKSPISEKFSPLADGGVLVHGGELMYGMFSKKTVGA 646
Query: 164 SECNIFQRLVERF-QDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEE 222
S + + + D ++ AQ V+ WL GF +E
Sbjct: 647 SGGGVVHTIFNEYGPDAAMSFFNGAQAVVNYWLLHNGFSIGIGDTIPD---------LET 697
Query: 223 ISYGLQEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMD-SLNYEKHISAALSEVSV 281
I Q+ E A + VD ++ S ++ A M+ +E +S AL+
Sbjct: 698 I----QKIENAVRVRKEEVDS----ITASATENTLEALPGMNVRETFESKVSRALNNARD 749
Query: 282 DAFRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMP 341
+A + +K N + M ++GSKG+ + + Q + +G Q + R+P
Sbjct: 750 EA--------GTATEKSLKDSNNAVQMARSGSKGSTINISQMTAVVGQQSVEGK---RIP 798
Query: 342 RELSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSS 401
++P F+ S + VE+S+L GL P E F H++A R+
Sbjct: 799 FGFK---------YRTLPHFTKDDYSPES---RGFVENSYLRGLTPTEFFFHAMAGREGL 846
Query: 402 FSDNADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTDK-DSSC 452
G + R+L+ + ++ YDGTVRN G+ ++QF Y D D C
Sbjct: 847 IDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGD-IVQFLYGEDGLDGQC 899
>Q0PQ03_9LECA (tr|Q0PQ03) DNA-directed RNA polymerase (Fragment) OS=Pertusaria
dactylina GN=RPB1 PE=3 SV=1
Length = 1015
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 119/463 (25%), Positives = 196/463 (42%), Gaps = 62/463 (13%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M+ VRV+P S+ +N SP DFDGD ++ ++PQS R E+++L + +++
Sbjct: 390 MMGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVSQLCMVPLNIVS 448
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCD--KKLTPPPSIIKAPSRNN 118
Q L+ + QD+L Y + V L +I + + + P P+IIK +
Sbjct: 449 PQRNAPLMGIVQDTLCGIYKICRRDVFLTKEQIMNVLLWVPDWDGVIPQPAIIKPRPK-- 506
Query: 119 SLWSGKQLFSMLLPSNFDY-------SFPP---NGVSVSDGELTSSFESSGWLRDSECNI 168
W+GKQ+ S+++P + SF P +GV VS GEL + + S +
Sbjct: 507 --WTGKQIISLVIPEGLNLIRKDKKESFSPINDDGVFVSGGELMYGLLNKKTVGASSSGL 564
Query: 169 FQRLVERFQDK-TLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCAR-ENMMEEISYG 226
+ + +N AQ V+ WL GF EN + +
Sbjct: 565 IHIIYNELGPQAAMNFFNGAQTVINYWLLHNGFSIGIGDTIPDRDTIQLIENAVNKRKDE 624
Query: 227 LQEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRH 286
+ E ++ N+L + L G NV +E +S AL+ DA
Sbjct: 625 VAELTRSATENEL------EPLPGM-----NVRE------TFESKVSKALNTARDDAGTV 667
Query: 287 MFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSC 346
+++ L N + M ++GSKG+ + + Q + +G Q + R+P
Sbjct: 668 TEDSLKDL--------NNAIQMARSGSKGSSINISQMTAVVGQQSVEGK---RIPFGFK- 715
Query: 347 AAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNA 406
++P F+ S + VE+S+L GL P E F H++A R+
Sbjct: 716 --------YRTLPHFTKDDYSPES---RGFVENSYLRGLTPTEFFFHAMAGREGLIDTAV 764
Query: 407 DLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ M D+ YDGTVRN G+ ++QF Y D
Sbjct: 765 KTAETGYIQRRLVKAMEDVMAKYDGTVRNSLGD-VVQFVYGED 806
>A9Q9P7_9EURO (tr|A9Q9P7) DNA-directed RNA polymerase (Fragment) OS=Staurothele
fissa GN=RPB1 PE=3 SV=1
Length = 999
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 119/463 (25%), Positives = 194/463 (41%), Gaps = 66/463 (14%)
Query: 6 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 65
VRV+P S+ +N +P DFDGD ++ ++PQS +R EL +L + +++ Q
Sbjct: 379 VRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEESRAELAQLCMVPLNIVSPQRNG 437
Query: 66 NLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCD--KKLTPPPSIIKAPSRNNSLWSG 123
L+ + QD+L Y + V L+ E+ + + + P P+I K R W+G
Sbjct: 438 PLMGIVQDTLCGIYKICRRDVFLSREEVMNIMLWVPDWDGVIPQPAIFKPRPR----WTG 493
Query: 124 KQLFSMLLPSNFDY-------SFPP---------NGVSVSDGELTSSFESSGWLRDSECN 167
KQ+ SM+LP + S PP +G+ VSDG+L + +
Sbjct: 494 KQVISMVLPPALNLVRIDGKPSQPPGERFAPAGDSGLFVSDGQLMFGLFNKKSVGTGSNG 553
Query: 168 IFQRLVERFQDKT-LNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYG 226
I + F +T ++ AQ V+ WL GF E + E+
Sbjct: 554 IIHTIFNEFGHETAMSFFNGAQTVVNYWLLHNGFSIGIGDTVPDVGTV--EKIKSEVDKK 611
Query: 227 LQEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRH 286
E E+ Q V + L G NV +E +SAAL+ +A
Sbjct: 612 KAEVER---ITQSAVAEDLEALPGM-----NVRE------TFESKVSAALNGARDEAGTA 657
Query: 287 MFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSC 346
+++ + N + M +AGSKG+ + + Q + +G Q + R+P
Sbjct: 658 TENSLKDI--------NNAIQMARAGSKGSTINISQMTAIVGQQSVEGK---RIPFGFK- 705
Query: 347 AAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNA 406
++P F+ K VE+S+L GL P E F H++A R+
Sbjct: 706 --------YRTLPHFA---KDDYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAV 754
Query: 407 DLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
G + RRL+ + ++ YDGTVR+ GN ++QF Y D
Sbjct: 755 KTAETGYIQRRLVKALEEVTVKYDGTVRDSRGN-IVQFIYGED 796
>C3U099_9EURO (tr|C3U099) DNA-directed RNA polymerase (Fragment)
OS=Chaetothyriales sp. TRN475 GN=RPB1 PE=3 SV=1
Length = 972
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 124/475 (26%), Positives = 195/475 (41%), Gaps = 94/475 (19%)
Query: 6 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 65
VRV+P S+ +N +P DFDGD ++ ++PQS +R EL L + +++ Q
Sbjct: 365 VRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEESRAELANLCMVPLNIVSPQRNG 423
Query: 66 NLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCD--KKLTPPPSIIKAPSRNNSLWSG 123
L+ + QD+L Y + V LN ++ + + + P P+I K R W+G
Sbjct: 424 PLMGIVQDTLAGIYKICRRDVFLNREQVMNIMLWVPDWDGVIPNPAIFKPRPR----WTG 479
Query: 124 KQLFSMLLPSNFDYSF----------PP--NGVSVSDGELTSSFESSGWLRDSECNIFQR 171
KQ+ SM+LP N + PP NG+ V DG L + ++ S I
Sbjct: 480 KQMISMVLPKNLNLERLDGKGTDGWCPPIDNGLLVLDGNLMFGLFNKKFVGTSSGGIIHT 539
Query: 172 LVERF-QDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGLQEA 230
+ F + + AQ V+ WL GF S G+ +
Sbjct: 540 IFNEFGHEAAMGFFNGAQTVIGYWLLHNGF-----------------------SIGIGDT 576
Query: 231 EQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHMFRN 290
Q + D + VA I MD+ E+ AL ++V R F +
Sbjct: 577 VPDAVTVQKIEDEVT-------SRKNEVAKITMDA---EEETLEALPGMNV---RETFES 623
Query: 291 -IQSLVDKYASKG-----------NAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSY 338
+Q+ ++ K N + M +AGSKG+ + + Q + +G Q +
Sbjct: 624 KVQAELNGARDKAGTATEQSLKDLNNAIQMARAGSKGSTINIAQMTAIVGQQAVEGK--- 680
Query: 339 RMPRELSCAAWNSEKGLN--SMPMFSNTLKSIQCYIP--HAVVESSFLTGLNPLECFAHS 394
R+P G N S+P F+ Y P VE+S+L GL P E F H+
Sbjct: 681 RIPF-----------GFNYRSLPHFAK-----DDYSPPSRGFVENSYLRGLTPTEFFFHA 724
Query: 395 VANRDSSFSDNADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
+A R+ G + RRL+ + ++ YDGTVR+ GN + QF Y D
Sbjct: 725 MAGREGLIDTAVKTAETGYIQRRLVKALEEVTVKYDGTVRDSKGN-VTQFIYGED 778
>G0RMT8_HYPJQ (tr|G0RMT8) DNA-directed RNA polymerase OS=Hypocrea jecorina
(strain QM6a) GN=TRIREDRAFT_79315 PE=3 SV=1
Length = 1755
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 121/470 (25%), Positives = 195/470 (41%), Gaps = 66/470 (14%)
Query: 1 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
M+ VRV+P S+ +N SP DFDGD ++ ++PQS R E+ EL + +++
Sbjct: 469 MMGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVKELCLVPNNIVS 527
Query: 61 GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCDK--KLTPPPSIIKAPSRNN 118
Q L+ + QDSL AY L L+ ++ L + + P P+I+K R
Sbjct: 528 PQKNGPLMGIVQDSLAGAYKLCRRDTFLDKNQVMNLMLWVPNWDGVIPQPAILKPRPR-- 585
Query: 119 SLWSGKQLFSMLLPSNFDYSFPPN---------GVSVSDGELTSSFESSGWLRDSECNIF 169
W+GKQ+ SM++P P + G+ + GEL + + +
Sbjct: 586 --WTGKQIISMVIPKEISLHAPEDKSDSPLKDAGLLIQAGELMYGLMKKKNIGSASGGVI 643
Query: 170 QRLV-ERFQDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGLQ 228
E + + L Q+V+ WL G + ++ Q
Sbjct: 644 HLCYNELGPEGAMAFLNGVQQVVTYWLLQNGHSIGIGDTIPDKQTIEK----VQVHIDTQ 699
Query: 229 EAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHMF 288
+AE A + ++ + L G NV + +E +S AL +M
Sbjct: 700 KAEVA-RLTAMATNNELEALPGM-----NVRA------TFENKVSMAL---------NMA 738
Query: 289 RN-IQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCA 347
R+ + K N +TM ++GSKG+ + + Q + +G Q + R+P
Sbjct: 739 RDQAGTTTQKSLKDSNNAVTMAESGSKGSSINISQMTALVGQQ---IVEGKRIPFGFK-- 793
Query: 348 AWNSEKGLNSMPMFSNTLKSIQCYIPHA--VVESSFLTGLNPLECFAHSVANRDSSFSDN 405
++P F+ Y P A VE+S+L GL P E F H++A R+
Sbjct: 794 -------YRTLPHFTK-----DDYSPEARGFVENSYLRGLTPTEFFFHAMAGREGLIDTA 841
Query: 406 ADLP--GTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTDK-DSSC 452
G + RRL+ + DL YDGTVRN G+ +IQF Y D D+ C
Sbjct: 842 VKTAETGYIQRRLVKALEDLNAQYDGTVRNSLGD-IIQFLYGEDGLDAMC 890