Miyakogusa Predicted Gene

Lj0g3v0111739.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0111739.1 tr|Q09085|Q09085_PHAVU Hydroxyproline-rich
glycoprotein (HRGP) (Fragment) OS=Phaseolus vulgaris
PE=2,70.97,0.000000000003,seg,NULL,CUFF.6782.1
         (94 letters)

Database: trembl 
           41,451,118 sequences; 13,208,986,710 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q09085_PHAVU (tr|Q09085) Hydroxyproline-rich glycoprotein (HRGP)...    68   1e-09
M4CT97_BRARP (tr|M4CT97) Uncharacterized protein OS=Brassica rap...    60   2e-07
M4CKL4_BRARP (tr|M4CKL4) Uncharacterized protein OS=Brassica rap...    58   1e-06
M4F9G8_BRARP (tr|M4F9G8) Uncharacterized protein OS=Brassica rap...    57   2e-06
M4C7W4_BRARP (tr|M4C7W4) Uncharacterized protein OS=Brassica rap...    57   3e-06

>Q09085_PHAVU (tr|Q09085) Hydroxyproline-rich glycoprotein (HRGP) (Fragment)
          OS=Phaseolus vulgaris PE=2 SV=1
          Length = 368

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/53 (71%), Positives = 42/53 (79%), Gaps = 1/53 (1%)

Query: 1  MLYAPPKHSPYGIPTKLNVGTDLHVKSKDKYEVVLKAKPFAYASKKHFKECEK 53
           L+APPK S   IPTKLN GT L +KSKDKYEVVLKAKPFAYA KK + +CEK
Sbjct: 47 QLHAPPKGSRCSIPTKLNEGTKLALKSKDKYEVVLKAKPFAYAPKKPY-DCEK 98


>M4CT97_BRARP (tr|M4CT97) Uncharacterized protein OS=Brassica rapa subsp.
           pekinensis GN=Bra007440 PE=4 SV=1
          Length = 845

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 40/55 (72%), Gaps = 3/55 (5%)

Query: 2   LYAPPKHSPYGIPTKLNVGTD---LHVKSKDKYEVVLKAKPFAYASKKHFKECEK 53
           L+APPK SP  IPT  ++G +   LHVKSK KYEVVL AK FAYA KK ++EC K
Sbjct: 437 LHAPPKGSPCNIPTSYHMGNEGAKLHVKSKTKYEVVLYAKSFAYAPKKPYEECRK 491


>M4CKL4_BRARP (tr|M4CKL4) Uncharacterized protein OS=Brassica rapa subsp.
           pekinensis GN=Bra004749 PE=4 SV=1
          Length = 879

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/54 (62%), Positives = 36/54 (66%), Gaps = 3/54 (5%)

Query: 2   LYAPPKHSPYGIPTKL---NVGTDLHVKSKDKYEVVLKAKPFAYASKKHFKECE 52
           L+APPK SP  IPT     N G  LHVKSK KYEVVL AK FAYA KK + EC 
Sbjct: 298 LHAPPKGSPCNIPTSYHMGNKGAKLHVKSKTKYEVVLYAKSFAYAPKKPYGECH 351


>M4F9G8_BRARP (tr|M4F9G8) Uncharacterized protein OS=Brassica rapa subsp.
           pekinensis GN=Bra037731 PE=4 SV=1
          Length = 876

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/54 (62%), Positives = 36/54 (66%), Gaps = 3/54 (5%)

Query: 2   LYAPPKHSPYGIPTKL---NVGTDLHVKSKDKYEVVLKAKPFAYASKKHFKECE 52
           L+APPK SP  IPT     N G  LHVKSK KYEVVL AK FAYA KK + EC 
Sbjct: 361 LHAPPKGSPCNIPTSYHMGNKGAKLHVKSKTKYEVVLYAKSFAYAPKKPYGECH 414


>M4C7W4_BRARP (tr|M4C7W4) Uncharacterized protein OS=Brassica rapa subsp.
           pekinensis GN=Bra000292 PE=4 SV=1
          Length = 907

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/54 (61%), Positives = 36/54 (66%), Gaps = 3/54 (5%)

Query: 2   LYAPPKHSPYGIPTKL---NVGTDLHVKSKDKYEVVLKAKPFAYASKKHFKECE 52
           L++PPK SP  IPT     N G  LHVKSK KYEVVL AK FAYA KK + EC 
Sbjct: 329 LHSPPKGSPCNIPTSYHLGNKGAKLHVKSKTKYEVVLYAKSFAYAPKKPYGECH 382