Miyakogusa Predicted Gene
- Lj0g3v0103829.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0103829.1 tr|D8RN79|D8RN79_SELML DNA-directed RNA
polymerase OS=Selaginella moellendorffii
GN=SELMODRAFT_41306,30.46,9e-19,RNA_pol_Rpb1_5,RNA polymerase Rpb1,
domain 5; DNA-DIRECTED RNA POLYMERASE,NULL; beta and beta-prime
,CUFF.5895.1
(339 letters)
Database: trembl
41,451,118 sequences; 13,208,986,710 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
K7M0Q7_SOYBN (tr|K7M0Q7) DNA-directed RNA polymerase OS=Glycine ... 591 e-166
K7MDF5_SOYBN (tr|K7MDF5) DNA-directed RNA polymerase OS=Glycine ... 587 e-165
I1MIR6_SOYBN (tr|I1MIR6) DNA-directed RNA polymerase OS=Glycine ... 587 e-165
K7MDF9_SOYBN (tr|K7MDF9) DNA-directed RNA polymerase OS=Glycine ... 586 e-165
K7MDF7_SOYBN (tr|K7MDF7) DNA-directed RNA polymerase OS=Glycine ... 586 e-165
G7LG09_MEDTR (tr|G7LG09) DNA-directed RNA polymerase OS=Medicago... 577 e-162
F6I5R3_VITVI (tr|F6I5R3) DNA-directed RNA polymerase OS=Vitis vi... 475 e-132
M5XM01_PRUPE (tr|M5XM01) Uncharacterized protein OS=Prunus persi... 473 e-131
B9RGA8_RICCO (tr|B9RGA8) DNA-directed RNA polymerase OS=Ricinus ... 446 e-123
Q5D868_SPIOL (tr|Q5D868) DNA-directed RNA polymerase (Fragment) ... 439 e-121
B9GWX9_POPTR (tr|B9GWX9) DNA-directed RNA polymerase OS=Populus ... 433 e-119
B9GM06_POPTR (tr|B9GM06) DNA-directed RNA polymerase OS=Populus ... 430 e-118
K4B027_SOLLC (tr|K4B027) DNA-directed RNA polymerase OS=Solanum ... 395 e-107
Q1L5X7_SOLLC (tr|Q1L5X7) DNA-directed RNA polymerase (Fragment) ... 389 e-106
M4C7I4_BRARP (tr|M4C7I4) DNA-directed RNA polymerase OS=Brassica... 376 e-102
D7LEE8_ARALL (tr|D7LEE8) DNA-directed RNA polymerase OS=Arabidop... 375 e-102
M0SC38_MUSAM (tr|M0SC38) DNA-directed RNA polymerase OS=Musa acu... 373 e-101
R0FV63_9BRAS (tr|R0FV63) Uncharacterized protein OS=Capsella rub... 368 1e-99
K3YP74_SETIT (tr|K3YP74) DNA-directed RNA polymerase OS=Setaria ... 347 3e-93
I1IV91_BRADI (tr|I1IV91) DNA-directed RNA polymerase OS=Brachypo... 345 1e-92
B8AHU1_ORYSI (tr|B8AHU1) DNA-directed RNA polymerase OS=Oryza sa... 344 2e-92
J3L9M9_ORYBR (tr|J3L9M9) DNA-directed RNA polymerase OS=Oryza br... 342 1e-91
M0WRB8_HORVD (tr|M0WRB8) DNA-directed RNA polymerase OS=Hordeum ... 337 3e-90
M8BMS2_AEGTA (tr|M8BMS2) DNA-directed RNA polymerase II subunit ... 337 3e-90
M0WRB9_HORVD (tr|M0WRB9) DNA-directed RNA polymerase OS=Hordeum ... 336 6e-90
B9F2S6_ORYSJ (tr|B9F2S6) DNA-directed RNA polymerase OS=Oryza sa... 321 3e-85
I1NXC6_ORYGL (tr|I1NXC6) DNA-directed RNA polymerase OS=Oryza gl... 321 3e-85
M8ASR8_AEGTA (tr|M8ASR8) DNA-directed RNA polymerase II subunit ... 318 1e-84
M0XPZ5_HORVD (tr|M0XPZ5) DNA-directed RNA polymerase OS=Hordeum ... 273 6e-71
K7USA4_MAIZE (tr|K7USA4) DNA-directed RNA polymerase OS=Zea mays... 269 1e-69
M8C0F8_AEGTA (tr|M8C0F8) DNA-directed RNA polymerase II subunit ... 267 5e-69
C5XUR7_SORBI (tr|C5XUR7) DNA-directed RNA polymerase OS=Sorghum ... 263 8e-68
K3Y4N1_SETIT (tr|K3Y4N1) DNA-directed RNA polymerase OS=Setaria ... 246 7e-63
C5XJ93_SORBI (tr|C5XJ93) DNA-directed RNA polymerase (Fragment) ... 231 4e-58
Q5JJW0_ORYSJ (tr|Q5JJW0) DNA-directed RNA polymerase OS=Oryza sa... 220 5e-55
B9EWM0_ORYSJ (tr|B9EWM0) DNA-directed RNA polymerase OS=Oryza sa... 220 6e-55
J3L864_ORYBR (tr|J3L864) DNA-directed RNA polymerase OS=Oryza br... 216 1e-53
B8A9M1_ORYSI (tr|B8A9M1) DNA-directed RNA polymerase OS=Oryza sa... 201 4e-49
A5AJJ3_VITVI (tr|A5AJJ3) Putative uncharacterized protein OS=Vit... 184 4e-44
M0XPZ2_HORVD (tr|M0XPZ2) DNA-directed RNA polymerase OS=Hordeum ... 182 1e-43
M0XQ01_HORVD (tr|M0XQ01) Uncharacterized protein OS=Hordeum vulg... 179 1e-42
Q1L5Y1_9MONI (tr|Q1L5Y1) DNA-directed RNA polymerase (Fragment) ... 147 5e-33
Q1L5X8_9BRYO (tr|Q1L5X8) DNA-directed RNA polymerase (Fragment) ... 146 1e-32
A9SIR4_PHYPA (tr|A9SIR4) DNA-directed RNA polymerase OS=Physcomi... 136 9e-30
M0XQ02_HORVD (tr|M0XQ02) DNA-directed RNA polymerase OS=Hordeum ... 135 2e-29
A9SIX8_PHYPA (tr|A9SIX8) DNA-directed RNA polymerase OS=Physcomi... 132 2e-28
Q1L5X9_MARPO (tr|Q1L5X9) DNA-directed RNA polymerase (Fragment) ... 130 8e-28
A9TDE5_PHYPA (tr|A9TDE5) Predicted protein OS=Physcomitrella pat... 110 1e-21
D8RN79_SELML (tr|D8RN79) DNA-directed RNA polymerase OS=Selagine... 102 2e-19
D8RLP4_SELML (tr|D8RLP4) DNA-directed RNA polymerase OS=Selagine... 99 2e-18
B9FC30_ORYSJ (tr|B9FC30) DNA-directed RNA polymerase OS=Oryza sa... 99 2e-18
B8AT49_ORYSI (tr|B8AT49) DNA-directed RNA polymerase OS=Oryza sa... 99 3e-18
M0TPQ4_MUSAM (tr|M0TPQ4) DNA-directed RNA polymerase OS=Musa acu... 99 3e-18
J3M0K5_ORYBR (tr|J3M0K5) DNA-directed RNA polymerase OS=Oryza br... 98 4e-18
B9RC12_RICCO (tr|B9RC12) DNA-directed RNA polymerase OS=Ricinus ... 97 7e-18
F6HUI3_VITVI (tr|F6HUI3) DNA-directed RNA polymerase OS=Vitis vi... 97 8e-18
J3MZZ4_ORYBR (tr|J3MZZ4) DNA-directed RNA polymerase OS=Oryza br... 96 1e-17
I1JA29_SOYBN (tr|I1JA29) DNA-directed RNA polymerase OS=Glycine ... 93 1e-16
K7K551_SOYBN (tr|K7K551) DNA-directed RNA polymerase OS=Glycine ... 93 1e-16
Q7XTZ3_ORYSJ (tr|Q7XTZ3) DNA-directed RNA polymerase OS=Oryza sa... 92 3e-16
Q01JX0_ORYSA (tr|Q01JX0) DNA-directed RNA polymerase OS=Oryza sa... 92 3e-16
K7LMQ8_SOYBN (tr|K7LMQ8) DNA-directed RNA polymerase OS=Glycine ... 92 3e-16
B9GKP9_POPTR (tr|B9GKP9) DNA-directed RNA polymerase OS=Populus ... 91 6e-16
G7KER5_MEDTR (tr|G7KER5) DNA-directed RNA polymerase OS=Medicago... 89 2e-15
M5WEG2_PRUPE (tr|M5WEG2) Uncharacterized protein OS=Prunus persi... 89 2e-15
B9G500_ORYSJ (tr|B9G500) DNA-directed RNA polymerase OS=Oryza sa... 88 4e-15
B8BED0_ORYSI (tr|B8BED0) DNA-directed RNA polymerase OS=Oryza sa... 87 1e-14
R0HUP7_9BRAS (tr|R0HUP7) Uncharacterized protein OS=Capsella rub... 86 2e-14
C0JR68_MAIZE (tr|C0JR68) DNA-directed RNA polymerase OS=Zea mays... 84 5e-14
C0JR65_MAIZE (tr|C0JR65) DNA-directed RNA polymerase OS=Zea mays... 84 6e-14
D7KU36_ARALL (tr|D7KU36) DNA-directed RNA polymerase OS=Arabidop... 84 1e-13
M7ZUZ1_TRIUA (tr|M7ZUZ1) DNA-directed RNA polymerase D subunit 1... 84 1e-13
M0VV74_HORVD (tr|M0VV74) DNA-directed RNA polymerase OS=Hordeum ... 83 1e-13
C5XUR6_SORBI (tr|C5XUR6) Putative uncharacterized protein Sb04g0... 83 1e-13
M8C5N9_AEGTA (tr|M8C5N9) DNA-directed RNA polymerase III subunit... 83 1e-13
K3XDU8_SETIT (tr|K3XDU8) DNA-directed RNA polymerase OS=Setaria ... 83 2e-13
B9T903_RICCO (tr|B9T903) Putative uncharacterized protein (Fragm... 82 3e-13
M0VV70_HORVD (tr|M0VV70) DNA-directed RNA polymerase OS=Hordeum ... 82 3e-13
M0VV72_HORVD (tr|M0VV72) DNA-directed RNA polymerase OS=Hordeum ... 82 3e-13
M0VV73_HORVD (tr|M0VV73) DNA-directed RNA polymerase OS=Hordeum ... 82 3e-13
M0VV69_HORVD (tr|M0VV69) DNA-directed RNA polymerase OS=Hordeum ... 82 3e-13
M0VV68_HORVD (tr|M0VV68) DNA-directed RNA polymerase OS=Hordeum ... 82 4e-13
M0VV71_HORVD (tr|M0VV71) DNA-directed RNA polymerase OS=Hordeum ... 82 4e-13
F2E4M8_HORVD (tr|F2E4M8) DNA-directed RNA polymerase OS=Hordeum ... 80 2e-12
M0YUM0_HORVD (tr|M0YUM0) DNA-directed RNA polymerase OS=Hordeum ... 79 2e-12
M0YUL9_HORVD (tr|M0YUL9) DNA-directed RNA polymerase OS=Hordeum ... 79 2e-12
A5BZZ3_VITVI (tr|A5BZZ3) DNA-directed RNA polymerase OS=Vitis vi... 79 2e-12
N1R1H3_AEGTA (tr|N1R1H3) DNA-directed RNA polymerase II subunit ... 79 2e-12
M4EFP9_BRARP (tr|M4EFP9) DNA-directed RNA polymerase OS=Brassica... 79 2e-12
M7ZRY5_TRIUA (tr|M7ZRY5) DNA-directed RNA polymerase II subunit ... 79 2e-12
M0YUL8_HORVD (tr|M0YUL8) DNA-directed RNA polymerase OS=Hordeum ... 79 2e-12
M0YUM1_HORVD (tr|M0YUM1) DNA-directed RNA polymerase OS=Hordeum ... 79 2e-12
F6H0D9_VITVI (tr|F6H0D9) DNA-directed RNA polymerase OS=Vitis vi... 79 3e-12
B7SNX0_LIRTU (tr|B7SNX0) DNA-directed RNA polymerase (Fragment) ... 79 3e-12
B7SNW9_ILLPA (tr|B7SNW9) DNA-directed RNA polymerase (Fragment) ... 79 4e-12
Q1L5X5_ANTMA (tr|Q1L5X5) DNA-directed RNA polymerase (Fragment) ... 78 4e-12
K4CP21_SOLLC (tr|K4CP21) DNA-directed RNA polymerase OS=Solanum ... 78 4e-12
Q1L5X6_SOLLC (tr|Q1L5X6) DNA-directed RNA polymerase (Fragment) ... 78 4e-12
B8BAW1_ORYSI (tr|B8BAW1) DNA-directed RNA polymerase OS=Oryza sa... 78 5e-12
M0SAM7_MUSAM (tr|M0SAM7) DNA-directed RNA polymerase OS=Musa acu... 78 6e-12
J3MQH6_ORYBR (tr|J3MQH6) DNA-directed RNA polymerase OS=Oryza br... 77 7e-12
I1I1H0_BRADI (tr|I1I1H0) DNA-directed RNA polymerase OS=Brachypo... 77 8e-12
B7SNW7_CERDE (tr|B7SNW7) DNA-directed RNA polymerase (Fragment) ... 77 8e-12
Q71ET6_MAGSO (tr|Q71ET6) DNA-directed RNA polymerase (Fragment) ... 77 8e-12
B7SNW6_BETVU (tr|B7SNW6) DNA-directed RNA polymerase (Fragment) ... 77 8e-12
B7SNX4_PEA (tr|B7SNX4) DNA-directed RNA polymerase (Fragment) OS... 77 1e-11
I1QFS2_ORYGL (tr|I1QFS2) DNA-directed RNA polymerase (Fragment) ... 77 1e-11
B9SXC0_RICCO (tr|B9SXC0) DNA-directed RNA polymerase OS=Ricinus ... 77 1e-11
D8PLU0_SCHCM (tr|D8PLU0) DNA-directed RNA polymerase OS=Schizoph... 77 1e-11
L0HG61_METFS (tr|L0HG61) DNA-directed RNA polymerase OS=Methanor... 77 1e-11
C5YGY9_SORBI (tr|C5YGY9) DNA-directed RNA polymerase OS=Sorghum ... 77 1e-11
L9XT18_9EURY (tr|L9XT18) DNA-directed RNA polymerase OS=Natrinem... 77 1e-11
K3YFU7_SETIT (tr|K3YFU7) DNA-directed RNA polymerase OS=Setaria ... 77 1e-11
L0JQ96_NATP1 (tr|L0JQ96) DNA-directed RNA polymerase OS=Natrinem... 77 1e-11
L9ZBF6_9EURY (tr|L9ZBF6) DNA-directed RNA polymerase OS=Natrinem... 77 1e-11
B7SNX2_PAPOR (tr|B7SNX2) DNA-directed RNA polymerase (Fragment) ... 76 2e-11
I7AWA0_9ASCO (tr|I7AWA0) DNA-directed RNA polymerase (Fragment) ... 76 2e-11
K7LNL8_SOYBN (tr|K7LNL8) DNA-directed RNA polymerase OS=Glycine ... 76 2e-11
K7TLU2_MAIZE (tr|K7TLU2) DNA-directed RNA polymerase OS=Zea mays... 76 2e-11
I1LI55_SOYBN (tr|I1LI55) DNA-directed RNA polymerase OS=Glycine ... 76 2e-11
Q71ET7_MAIZE (tr|Q71ET7) DNA-directed RNA polymerase (Fragment) ... 76 2e-11
M0B9L1_9EURY (tr|M0B9L1) DNA-directed RNA polymerase OS=Natrialb... 76 2e-11
I7AW10_9ASCO (tr|I7AW10) DNA-directed RNA polymerase (Fragment) ... 76 2e-11
L9ZV76_9EURY (tr|L9ZV76) DNA-directed RNA polymerase OS=Natrialb... 76 2e-11
D3SW60_NATMM (tr|D3SW60) DNA-directed RNA polymerase OS=Natrialb... 75 2e-11
G4IAE7_9EURY (tr|G4IAE7) DNA-directed RNA polymerase OS=Halobact... 75 3e-11
Q71EU0_CYCRE (tr|Q71EU0) DNA-directed RNA polymerase (Fragment) ... 75 3e-11
M0CGM0_9EURY (tr|M0CGM0) DNA-directed RNA polymerase OS=Halosimp... 75 3e-11
J4C946_THEOR (tr|J4C946) DNA-directed RNA polymerase OS=Theileri... 75 3e-11
L9WAW0_9EURY (tr|L9WAW0) DNA-directed RNA polymerase OS=Natronor... 75 3e-11
C1GX38_PARBA (tr|C1GX38) DNA-directed RNA polymerase OS=Paracocc... 75 4e-11
R4W721_9EURY (tr|R4W721) DNA-directed RNA polymerase subunit A O... 75 4e-11
R7W504_AEGTA (tr|R7W504) DNA-directed RNA polymerase II subunit ... 75 4e-11
L0PB43_PNEJ8 (tr|L0PB43) DNA-directed RNA polymerase OS=Pneumocy... 75 4e-11
Q5S1Y0_9HOMO (tr|Q5S1Y0) DNA-directed RNA polymerase (Fragment) ... 75 4e-11
C1GGI7_PARBD (tr|C1GGI7) DNA-directed RNA polymerase OS=Paracocc... 75 4e-11
C0SHD3_PARBP (tr|C0SHD3) DNA-directed RNA polymerase OS=Paracocc... 75 4e-11
M0RZZ8_MUSAM (tr|M0RZZ8) DNA-directed RNA polymerase OS=Musa acu... 75 4e-11
M0BP74_9EURY (tr|M0BP74) DNA-directed RNA polymerase OS=Haloviva... 75 5e-11
M0CTU8_9EURY (tr|M0CTU8) DNA-directed RNA polymerase OS=Haloterr... 75 5e-11
E7QTQ8_9EURY (tr|E7QTQ8) DNA-directed RNA polymerase OS=Haladapt... 75 5e-11
C7NYI6_HALMD (tr|C7NYI6) DNA-directed RNA polymerase OS=Halomicr... 74 5e-11
I1PSI4_ORYGL (tr|I1PSI4) DNA-directed RNA polymerase OS=Oryza gl... 74 5e-11
Q71EU1_9SPER (tr|Q71EU1) DNA-directed RNA polymerase (Fragment) ... 74 5e-11
M5VSC7_PRUPE (tr|M5VSC7) Uncharacterized protein OS=Prunus persi... 74 5e-11
Q5WMZ9_ORYSJ (tr|Q5WMZ9) DNA-directed RNA polymerase OS=Oryza sa... 74 5e-11
L0B0B3_BABEQ (tr|L0B0B3) DNA-directed RNA polymerase OS=Babesia ... 74 5e-11
Q1L5Z5_RHOMC (tr|Q1L5Z5) DNA-directed RNA polymerase (Fragment) ... 74 6e-11
Q0DKN9_ORYSJ (tr|Q0DKN9) DNA-directed RNA polymerase OS=Oryza sa... 74 6e-11
F0QWN9_VULM7 (tr|F0QWN9) DNA-directed RNA polymerase OS=Vulcanis... 74 6e-11
Q71ET3_PSINU (tr|Q71ET3) DNA-directed RNA polymerase (Fragment) ... 74 7e-11
L9WC12_9EURY (tr|L9WC12) DNA-directed RNA polymerase OS=Natronor... 74 7e-11
M0ZVV4_SOLTU (tr|M0ZVV4) DNA-directed RNA polymerase OS=Solanum ... 74 7e-11
K4BAK3_SOLLC (tr|K4BAK3) DNA-directed RNA polymerase OS=Solanum ... 74 7e-11
Q5I2R4_9HOMO (tr|Q5I2R4) DNA-directed RNA polymerase (Fragment) ... 74 7e-11
L0IA28_HALRX (tr|L0IA28) DNA-directed RNA polymerase OS=Haloviva... 74 7e-11
M0N8V3_9EURY (tr|M0N8V3) DNA-directed RNA polymerase OS=Halococc... 74 7e-11
Q1L5Y6_SOLLC (tr|Q1L5Y6) DNA-directed RNA polymerase (Fragment) ... 74 7e-11
B6K857_SCHJY (tr|B6K857) DNA-directed RNA polymerase OS=Schizosa... 74 7e-11
B7SNX1_TOBAC (tr|B7SNX1) DNA-directed RNA polymerase (Fragment) ... 74 8e-11
O04144_9VIRI (tr|O04144) DNA-directed RNA polymerase (Fragment) ... 74 8e-11
E1QRA0_VULDI (tr|E1QRA0) DNA-directed RNA polymerase OS=Vulcanis... 74 8e-11
L1K4K9_GUITH (tr|L1K4K9) DNA-directed RNA polymerase OS=Guillard... 74 8e-11
G8YNQ4_PICSO (tr|G8YNQ4) DNA-directed RNA polymerase OS=Pichia s... 74 9e-11
A7I9N6_METB6 (tr|A7I9N6) DNA-directed RNA polymerase OS=Methanor... 74 9e-11
A9CTM9_ENTBH (tr|A9CTM9) DNA-directed RNA polymerase OS=Enterocy... 74 9e-11
B0DB45_LACBS (tr|B0DB45) DNA-directed RNA polymerase OS=Laccaria... 74 9e-11
Q71ET5_NYMOD (tr|Q71ET5) DNA-directed RNA polymerase (Fragment) ... 74 9e-11
B9FZ51_ORYSJ (tr|B9FZ51) DNA-directed RNA polymerase OS=Oryza sa... 74 1e-10
D9Q2P3_ACIS3 (tr|D9Q2P3) DNA-directed RNA polymerase OS=Acidilob... 74 1e-10
M0AIR1_NATA1 (tr|M0AIR1) DNA-directed RNA polymerase OS=Natrialb... 74 1e-10
G7JYR7_MEDTR (tr|G7JYR7) DNA-directed RNA polymerase OS=Medicago... 74 1e-10
H8X2B4_CANO9 (tr|H8X2B4) DNA-directed RNA polymerase OS=Candida ... 74 1e-10
Q5A164_CANAL (tr|Q5A164) DNA-directed RNA polymerase OS=Candida ... 74 1e-10
C4YGE6_CANAW (tr|C4YGE6) DNA-directed RNA polymerase OS=Candida ... 74 1e-10
M0BB21_9EURY (tr|M0BB21) DNA-directed RNA polymerase OS=Natrialb... 74 1e-10
M0BMM5_9EURY (tr|M0BMM5) DNA-directed RNA polymerase OS=Haloterr... 74 1e-10
Q5A0Z3_CANAL (tr|Q5A0Z3) DNA-directed RNA polymerase OS=Candida ... 74 1e-10
B9WF61_CANDC (tr|B9WF61) DNA-directed RNA polymerase OS=Candida ... 74 1e-10
Q2TUN9_THUOC (tr|Q2TUN9) DNA-directed RNA polymerase (Fragment) ... 74 1e-10
F0XVN3_AURAN (tr|F0XVN3) DNA-directed RNA polymerase OS=Aureococ... 74 1e-10
M7ZGC7_TRIUA (tr|M7ZGC7) DNA-directed RNA polymerase II subunit ... 73 1e-10
G8B659_CANPC (tr|G8B659) DNA-directed RNA polymerase OS=Candida ... 73 1e-10
M8C8K4_AEGTA (tr|M8C8K4) Uncharacterized protein OS=Aegilops tau... 73 1e-10
N0BKJ3_9EURY (tr|N0BKJ3) DNA-directed RNA polymerase, subunit A ... 73 1e-10
Q2TUN8_TAXCA (tr|Q2TUN8) DNA-directed RNA polymerase (Fragment) ... 73 1e-10
D2RUW1_HALTV (tr|D2RUW1) DNA-directed RNA polymerase OS=Haloterr... 73 1e-10
M0CJD0_9EURY (tr|M0CJD0) DNA-directed RNA polymerase OS=Haloterr... 73 1e-10
K8ECL4_9CHLO (tr|K8ECL4) DNA-directed RNA polymerase OS=Bathycoc... 73 1e-10
N1R5D7_AEGTA (tr|N1R5D7) DNA-directed RNA polymerase II subunit ... 73 1e-10
C5JRK1_AJEDS (tr|C5JRK1) DNA-directed RNA polymerase OS=Ajellomy... 73 1e-10
C5GRI8_AJEDR (tr|C5GRI8) DNA-directed RNA polymerase OS=Ajellomy... 73 1e-10
B7SNX3_PERAE (tr|B7SNX3) DNA-directed RNA polymerase (Fragment) ... 73 1e-10
C7NTX8_HALUD (tr|C7NTX8) DNA-directed RNA polymerase OS=Halorhab... 73 1e-10
C5Y387_SORBI (tr|C5Y387) DNA-directed RNA polymerase OS=Sorghum ... 73 2e-10
M0VV76_HORVD (tr|M0VV76) DNA-directed RNA polymerase OS=Hordeum ... 73 2e-10
C5MI79_CANTT (tr|C5MI79) DNA-directed RNA polymerase (Fragment) ... 73 2e-10
A1YIA7_ISSOR (tr|A1YIA7) DNA-directed RNA polymerase (Fragment) ... 73 2e-10
M0MVU3_HALMO (tr|M0MVU3) DNA-directed RNA polymerase OS=Halococc... 73 2e-10
M0MG30_9EURY (tr|M0MG30) DNA-directed RNA polymerase OS=Halococc... 73 2e-10
B7SNW8_DRIWI (tr|B7SNW8) DNA-directed RNA polymerase (Fragment) ... 73 2e-10
C0NZL8_AJECG (tr|C0NZL8) DNA-directed RNA polymerase OS=Ajellomy... 73 2e-10
F0UGW8_AJEC8 (tr|F0UGW8) DNA-directed RNA polymerase OS=Ajellomy... 73 2e-10
Q4N1T2_THEPA (tr|Q4N1T2) DNA-directed RNA polymerase OS=Theileri... 73 2e-10
D8J909_HALJB (tr|D8J909) DNA-directed RNA polymerase OS=Halalkal... 73 2e-10
I7CNF2_NATSJ (tr|I7CNF2) DNA-directed RNA polymerase OS=Natrinem... 72 2e-10
A5DM42_PICGU (tr|A5DM42) DNA-directed RNA polymerase OS=Meyerozy... 72 2e-10
L0ABG6_CALLD (tr|L0ABG6) DNA-directed RNA polymerase OS=Caldisph... 72 2e-10
Q4U940_THEAN (tr|Q4U940) DNA-directed RNA polymerase OS=Theileri... 72 2e-10
B7SNX5_SARHE (tr|B7SNX5) DNA-directed RNA polymerase (Fragment) ... 72 2e-10
K7K465_SOYBN (tr|K7K465) DNA-directed RNA polymerase OS=Glycine ... 72 2e-10
L9YYH0_9EURY (tr|L9YYH0) DNA-directed RNA polymerase OS=Natrinem... 72 2e-10
Q1L5Y7_ANTMA (tr|Q1L5Y7) DNA-directed RNA polymerase (Fragment) ... 72 2e-10
R4XCU7_9ASCO (tr|R4XCU7) Uncharacterized protein OS=Taphrina def... 72 2e-10
M0VV75_HORVD (tr|M0VV75) DNA-directed RNA polymerase OS=Hordeum ... 72 2e-10
F8D4N2_HALXS (tr|F8D4N2) DNA-directed RNA polymerase OS=Halopige... 72 2e-10
K9GE05_PEND1 (tr|K9GE05) DNA-directed RNA polymerase OS=Penicill... 72 2e-10
K9G2F7_PEND2 (tr|K9G2F7) DNA-directed RNA polymerase OS=Penicill... 72 2e-10
D8SYZ7_SELML (tr|D8SYZ7) DNA-directed RNA polymerase OS=Selagine... 72 2e-10
Q0CS43_ASPTN (tr|Q0CS43) DNA-directed RNA polymerase OS=Aspergil... 72 2e-10
B8NTG3_ASPFN (tr|B8NTG3) DNA-directed RNA polymerase OS=Aspergil... 72 2e-10
A9U396_PHYPA (tr|A9U396) DNA-directed RNA polymerase OS=Physcomi... 72 2e-10
M0EZI3_9EURY (tr|M0EZI3) DNA-directed RNA polymerase OS=Halorubr... 72 2e-10
I7I9Q3_BABMI (tr|I7I9Q3) DNA-directed RNA polymerase OS=Babesia ... 72 2e-10
Q2U3T5_ASPOR (tr|Q2U3T5) DNA-directed RNA polymerase OS=Aspergil... 72 2e-10
I7ZWF4_ASPO3 (tr|I7ZWF4) DNA-directed RNA polymerase OS=Aspergil... 72 2e-10
G1X896_ARTOA (tr|G1X896) DNA-directed RNA polymerase OS=Arthrobo... 72 2e-10
M8C8M0_AEGTA (tr|M8C8M0) DNA-directed RNA polymerase II subunit ... 72 3e-10
A5E7R0_LODEL (tr|A5E7R0) DNA-directed RNA polymerase OS=Lodderom... 72 3e-10
J8Q283_SACAR (tr|J8Q283) DNA-directed RNA polymerase OS=Saccharo... 72 3e-10
M3B0A6_9PEZI (tr|M3B0A6) DNA-directed RNA polymerase OS=Pseudoce... 72 3e-10
Q71ET4_AMBTC (tr|Q71ET4) DNA-directed RNA polymerase (Fragment) ... 72 3e-10
M0XMW2_HORVD (tr|M0XMW2) DNA-directed RNA polymerase OS=Hordeum ... 72 3e-10
I7B533_9ASCO (tr|I7B533) DNA-directed RNA polymerase (Fragment) ... 72 3e-10
A6RGX8_AJECN (tr|A6RGX8) DNA-directed RNA polymerase OS=Ajellomy... 72 3e-10
I7AW82_9ASCO (tr|I7AW82) DNA-directed RNA polymerase (Fragment) ... 72 3e-10
A8MAA2_CALMQ (tr|A8MAA2) DNA-directed RNA polymerase OS=Caldivir... 72 3e-10
G8YLC5_PICSO (tr|G8YLC5) DNA-directed RNA polymerase OS=Pichia s... 72 3e-10
M0MYH8_9EURY (tr|M0MYH8) DNA-directed RNA polymerase OS=Halococc... 72 3e-10
F7PP16_9EURY (tr|F7PP16) DNA-directed RNA polymerase OS=Halorhab... 72 3e-10
L9WMT4_9EURY (tr|L9WMT4) DNA-directed RNA polymerase OS=Natronor... 72 3e-10
D8S773_SELML (tr|D8S773) DNA-directed RNA polymerase OS=Selagine... 72 3e-10
B8GDV8_METPE (tr|B8GDV8) DNA-directed RNA polymerase OS=Methanos... 72 3e-10
A1CLD8_ASPCL (tr|A1CLD8) DNA-directed RNA polymerase OS=Aspergil... 72 3e-10
E1RHV0_METP4 (tr|E1RHV0) DNA-directed RNA polymerase OS=Methanop... 72 3e-10
A8N128_COPC7 (tr|A8N128) DNA-directed RNA polymerase OS=Coprinop... 72 3e-10
M1Y5V8_9EURY (tr|M1Y5V8) DNA-directed RNA polymerase OS=Natronom... 72 3e-10
I7AAU4_9ASCO (tr|I7AAU4) DNA-directed RNA polymerase (Fragment) ... 72 3e-10
A2QU24_ASPNC (tr|A2QU24) DNA-directed RNA polymerase OS=Aspergil... 72 3e-10
G7XMM9_ASPKW (tr|G7XMM9) DNA-directed RNA polymerase III largest... 72 3e-10
L9X4G6_9EURY (tr|L9X4G6) DNA-directed RNA polymerase OS=Natronol... 72 3e-10
A1RWW5_THEPD (tr|A1RWW5) DNA-directed RNA polymerase OS=Thermofi... 72 3e-10
Q2TUN7_9CONI (tr|Q2TUN7) DNA-directed RNA polymerase (Fragment) ... 72 4e-10
Q2TUN6_GINBI (tr|Q2TUN6) DNA-directed RNA polymerase (Fragment) ... 72 4e-10
C8VPJ2_EMENI (tr|C8VPJ2) DNA-directed RNA polymerase OS=Emericel... 72 4e-10
I7AW78_9SACH (tr|I7AW78) DNA-directed RNA polymerase (Fragment) ... 72 4e-10
J3K6Z9_COCIM (tr|J3K6Z9) DNA-directed RNA polymerase OS=Coccidio... 72 4e-10
L9XU54_9EURY (tr|L9XU54) DNA-directed RNA polymerase OS=Natronoc... 72 4e-10
I7AW04_9ASCO (tr|I7AW04) DNA-directed RNA polymerase (Fragment) ... 72 4e-10
G3XMU8_ASPNA (tr|G3XMU8) Putative uncharacterized protein (Fragm... 72 4e-10
M3J5V2_CANMA (tr|M3J5V2) DNA-directed RNA polymerase (Fragment) ... 72 4e-10
L0JVC9_9EURY (tr|L0JVC9) DNA-directed RNA polymerase OS=Natronoc... 72 4e-10
C4JWU1_UNCRE (tr|C4JWU1) DNA-directed RNA polymerase OS=Uncinoca... 72 4e-10
J3MKK7_ORYBR (tr|J3MKK7) DNA-directed RNA polymerase OS=Oryza br... 72 4e-10
E9D7C6_COCPS (tr|E9D7C6) DNA-directed RNA polymerase OS=Coccidio... 72 4e-10
C5PCH6_COCP7 (tr|C5PCH6) DNA-directed RNA polymerase OS=Coccidio... 71 4e-10
I7B551_9ASCO (tr|I7B551) DNA-directed RNA polymerase (Fragment) ... 71 4e-10
Q6CB20_YARLI (tr|Q6CB20) DNA-directed RNA polymerase OS=Yarrowia... 71 5e-10
B7SNW5_ASPOF (tr|B7SNW5) DNA-directed RNA polymerase (Fragment) ... 71 5e-10
Q0PQ08_9LECA (tr|Q0PQ08) DNA-directed RNA polymerase (Fragment) ... 71 5e-10
I7AB21_PACTA (tr|I7AB21) DNA-directed RNA polymerase (Fragment) ... 71 5e-10
F8QG95_SERL3 (tr|F8QG95) DNA-directed RNA polymerase OS=Serpula ... 71 5e-10
Q71ET9_9CONI (tr|Q71ET9) DNA-directed RNA polymerase (Fragment) ... 71 5e-10
F8PAY6_SERL9 (tr|F8PAY6) DNA-directed RNA polymerase OS=Serpula ... 71 5e-10
A1YIB0_9HOMO (tr|A1YIB0) DNA-directed RNA polymerase (Fragment) ... 71 5e-10
I7B8X3_9ASCO (tr|I7B8X3) DNA-directed RNA polymerase (Fragment) ... 71 5e-10
E7R9B7_PICAD (tr|E7R9B7) DNA-directed RNA polymerase OS=Pichia a... 71 5e-10
K9ICM6_AGABB (tr|K9ICM6) DNA-directed RNA polymerase (Fragment) ... 71 5e-10
K5XJ33_AGABU (tr|K5XJ33) DNA-directed RNA polymerase OS=Agaricus... 71 5e-10
L9XCI5_9EURY (tr|L9XCI5) DNA-directed RNA polymerase OS=Natronoc... 71 5e-10
G6FGM6_9EURY (tr|G6FGM6) DNA-directed RNA polymerase OS=Methanol... 71 5e-10
I7AB39_9ASCO (tr|I7AB39) DNA-directed RNA polymerase (Fragment) ... 71 6e-10
L9ZGF0_9EURY (tr|L9ZGF0) DNA-directed RNA polymerase OS=Natrinem... 71 6e-10
D2V0G9_NAEGR (tr|D2V0G9) DNA-directed RNA polymerase OS=Naegleri... 71 6e-10
K5X834_PHACS (tr|K5X834) DNA-directed RNA polymerase OS=Phaneroc... 71 7e-10
E3P6R0_DRIWI (tr|E3P6R0) DNA-directed RNA polymerase (Fragment) ... 71 7e-10
I7A032_PICAN (tr|I7A032) DNA-directed RNA polymerase (Fragment) ... 71 7e-10
M5ECE3_MALSM (tr|M5ECE3) Genomic scaffold, msy_sf_17 OS=Malassez... 71 7e-10
M0NU78_9EURY (tr|M0NU78) DNA-directed RNA polymerase OS=Halorubr... 71 7e-10
M0M7G2_9EURY (tr|M0M7G2) DNA-directed RNA polymerase OS=Halobifo... 71 7e-10
Q3LWE3_BIGNA (tr|Q3LWE3) DNA-directed RNA polymerase OS=Bigelowi... 71 7e-10
Q2PYS5_HYACU (tr|Q2PYS5) DNA-directed RNA polymerase (Fragment) ... 71 7e-10
E7R7W7_PICAD (tr|E7R7W7) DNA-directed RNA polymerase OS=Pichia a... 70 8e-10
G3B9E4_CANTC (tr|G3B9E4) DNA-directed RNA polymerase OS=Candida ... 70 8e-10
A7AP17_BABBO (tr|A7AP17) DNA-directed RNA polymerase OS=Babesia ... 70 8e-10
C4Y380_CLAL4 (tr|C4Y380) DNA-directed RNA polymerase OS=Clavispo... 70 8e-10
B6JYP8_SCHJY (tr|B6JYP8) DNA-directed RNA polymerase OS=Schizosa... 70 8e-10
N1PVU3_MYCPJ (tr|N1PVU3) Uncharacterized protein OS=Dothistroma ... 70 9e-10
A9TK89_PHYPA (tr|A9TK89) DNA-directed RNA polymerase OS=Physcomi... 70 9e-10
Q2PYS7_BATDE (tr|Q2PYS7) DNA-directed RNA polymerase (Fragment) ... 70 9e-10
K4DAY0_SOLLC (tr|K4DAY0) DNA-directed RNA polymerase OS=Solanum ... 70 9e-10
F8TBT6_9EUKA (tr|F8TBT6) DNA-directed RNA polymerase (Fragment) ... 70 9e-10
I7B971_9ASCO (tr|I7B971) DNA-directed RNA polymerase (Fragment) ... 70 9e-10
A1YIB9_ALLMA (tr|A1YIB9) DNA-directed RNA polymerase (Fragment) ... 70 9e-10
M0D947_9EURY (tr|M0D947) DNA-directed RNA polymerase OS=Halorubr... 70 9e-10
A3GEY3_PICST (tr|A3GEY3) DNA-directed RNA polymerase OS=Scheffer... 70 9e-10
I7B8Z8_9ASCO (tr|I7B8Z8) DNA-directed RNA polymerase (Fragment) ... 70 1e-09
F4NYT6_BATDJ (tr|F4NYT6) DNA-directed RNA polymerase OS=Batracho... 70 1e-09
A1YIA9_9ASCO (tr|A1YIA9) DNA-directed RNA polymerase (Fragment) ... 70 1e-09
A8Q5I6_MALGO (tr|A8Q5I6) DNA-directed RNA polymerase OS=Malassez... 70 1e-09
G0VJ35_NAUCC (tr|G0VJ35) DNA-directed RNA polymerase OS=Naumovoz... 70 1e-09
I4Y8P0_WALSC (tr|I4Y8P0) DNA-directed RNA polymerase OS=Wallemia... 70 1e-09
L8FU88_GEOD2 (tr|L8FU88) DNA-directed RNA polymerase OS=Geomyces... 70 1e-09
G3AEV6_SPAPN (tr|G3AEV6) DNA-directed RNA polymerase OS=Spathasp... 70 1e-09
F8TBT7_9EUKA (tr|F8TBT7) DNA-directed RNA polymerase (Fragment) ... 70 1e-09
D7DAF3_STAHD (tr|D7DAF3) DNA-directed RNA polymerase OS=Staphylo... 70 1e-09
D7MC36_ARALL (tr|D7MC36) DNA-directed RNA polymerase OS=Arabidop... 70 1e-09
B6H2R1_PENCW (tr|B6H2R1) DNA-directed RNA polymerase OS=Penicill... 70 1e-09
A3CS84_METMJ (tr|A3CS84) DNA-directed RNA polymerase OS=Methanoc... 70 1e-09
Q2FPK0_METHJ (tr|Q2FPK0) DNA-directed RNA polymerase OS=Methanos... 70 1e-09
M3C1A1_9PEZI (tr|M3C1A1) DNA-directed RNA polymerase OS=Mycospha... 70 1e-09
R0GXL7_9BRAS (tr|R0GXL7) Uncharacterized protein OS=Capsella rub... 70 1e-09
Q4WYV2_ASPFU (tr|Q4WYV2) DNA-directed RNA polymerase OS=Neosarto... 70 1e-09
D4D8U7_TRIVH (tr|D4D8U7) DNA-directed RNA polymerase OS=Trichoph... 70 1e-09
B0XZZ0_ASPFC (tr|B0XZZ0) DNA-directed RNA polymerase OS=Neosarto... 70 1e-09
Q30BD9_9EUKA (tr|Q30BD9) DNA-directed RNA polymerase OS=Glaucocy... 70 1e-09
A1D5Y9_NEOFI (tr|A1D5Y9) DNA-directed RNA polymerase OS=Neosarto... 70 1e-09
Q4P7Q0_USTMA (tr|Q4P7Q0) DNA-directed RNA polymerase OS=Ustilago... 70 1e-09
K0KEX7_WICCF (tr|K0KEX7) DNA-directed RNA polymerase OS=Wickerha... 70 1e-09
Q2TUN3_EPHVI (tr|Q2TUN3) DNA-directed RNA polymerase (Fragment) ... 70 1e-09
I7B521_9ASCO (tr|I7B521) DNA-directed RNA polymerase (Fragment) ... 70 1e-09
H2APV4_KAZAF (tr|H2APV4) DNA-directed RNA polymerase OS=Kazachst... 70 1e-09
J4IAY2_FIBRA (tr|J4IAY2) DNA-directed RNA polymerase OS=Fibropor... 70 1e-09
M7NMZ7_9ASCO (tr|M7NMZ7) Uncharacterized protein OS=Pneumocystis... 70 1e-09
A2SSM4_METLZ (tr|A2SSM4) DNA-directed RNA polymerase OS=Methanoc... 70 1e-09
K1WVV1_MARBU (tr|K1WVV1) DNA-directed RNA polymerase OS=Marssoni... 70 1e-09
I7A060_9SACH (tr|I7A060) DNA-directed RNA polymerase (Fragment) ... 70 2e-09
M7NS02_9ASCO (tr|M7NS02) Uncharacterized protein OS=Pneumocystis... 70 2e-09
L8WR47_9HOMO (tr|L8WR47) DNA-directed RNA polymerase OS=Rhizocto... 70 2e-09
Q2PYR1_9FUNG (tr|Q2PYR1) DNA-directed RNA polymerase (Fragment) ... 70 2e-09
K3ZN27_SETIT (tr|K3ZN27) DNA-directed RNA polymerase OS=Setaria ... 70 2e-09
A3DMP4_STAMF (tr|A3DMP4) DNA-directed RNA polymerase OS=Staphylo... 69 2e-09
M4D581_BRARP (tr|M4D581) DNA-directed RNA polymerase OS=Brassica... 69 2e-09
I2GVL8_TETBL (tr|I2GVL8) DNA-directed RNA polymerase OS=Tetrapis... 69 2e-09
M5C134_9HOMO (tr|M5C134) DNA-directed RNA polymerase II subunit ... 69 2e-09
M4N608_9ASCO (tr|M4N608) RNA polymerase I (Fragment) OS=Schizobl... 69 2e-09
M0D3Q4_9EURY (tr|M0D3Q4) DNA-directed RNA polymerase OS=Halosarc... 69 2e-09
M0XB88_HORVD (tr|M0XB88) DNA-directed RNA polymerase OS=Hordeum ... 69 2e-09
D5GDS7_TUBMM (tr|D5GDS7) DNA-directed RNA polymerase OS=Tuber me... 69 2e-09
Q6CMC7_KLULA (tr|Q6CMC7) DNA-directed RNA polymerase OS=Kluyvero... 69 2e-09
R9NXG0_9BASI (tr|R9NXG0) Uncharacterized protein OS=Pseudozyma h... 69 2e-09
O09451_9FLOR (tr|O09451) DNA-directed RNA polymerase (Fragment) ... 69 2e-09
I7B966_9ASCO (tr|I7B966) DNA-directed RNA polymerase (Fragment) ... 69 2e-09
F9X8Y2_MYCGM (tr|F9X8Y2) DNA-directed RNA polymerase OS=Mycospha... 69 2e-09
I7A0B2_9ASCO (tr|I7A0B2) DNA-directed RNA polymerase (Fragment) ... 69 2e-09
G0W7R2_NAUDC (tr|G0W7R2) DNA-directed RNA polymerase OS=Naumovoz... 69 2e-09
F2RRI5_TRIT1 (tr|F2RRI5) DNA-directed RNA polymerase OS=Trichoph... 69 2e-09
E6R8Q5_CRYGW (tr|E6R8Q5) DNA-directed RNA polymerase OS=Cryptoco... 69 2e-09
L0AH64_NATGS (tr|L0AH64) DNA-directed RNA polymerase OS=Natronob... 69 2e-09
Q6FQS9_CANGA (tr|Q6FQS9) DNA-directed RNA polymerase OS=Candida ... 69 2e-09
I7B959_9ASCO (tr|I7B959) DNA-directed RNA polymerase (Fragment) ... 69 2e-09
F2SYH8_TRIRC (tr|F2SYH8) DNA-directed RNA polymerase OS=Trichoph... 69 2e-09
C5DJG5_LACTC (tr|C5DJG5) DNA-directed RNA polymerase OS=Lachance... 69 2e-09
A5H294_9LECA (tr|A5H294) DNA-directed RNA polymerase (Fragment) ... 69 2e-09
M0LES2_9EURY (tr|M0LES2) DNA-directed RNA polymerase OS=Halobifo... 69 2e-09
D4AZK0_ARTBC (tr|D4AZK0) DNA-directed RNA polymerase OS=Arthrode... 69 2e-09
A5H293_9LECA (tr|A5H293) DNA-directed RNA polymerase (Fragment) ... 69 2e-09
F2PMM1_TRIEC (tr|F2PMM1) DNA-directed RNA polymerase OS=Trichoph... 69 2e-09
Q3IUN2_NATPD (tr|Q3IUN2) DNA-directed RNA polymerase OS=Natronom... 69 2e-09
M4D210_BRARP (tr|M4D210) DNA-directed RNA polymerase OS=Brassica... 69 2e-09
E5R344_ARTGP (tr|E5R344) DNA-directed RNA polymerase OS=Arthrode... 69 2e-09
I7AAT9_WICCA (tr|I7AAT9) DNA-directed RNA polymerase (Fragment) ... 69 2e-09
M4N648_9ASCO (tr|M4N648) RNA polymerase I (Fragment) OS=Nadsonia... 69 3e-09
Q9BMP2_STYMT (tr|Q9BMP2) DNA-directed RNA polymerase (Fragment) ... 69 3e-09
Q55QA7_CRYNB (tr|Q55QA7) DNA-directed RNA polymerase OS=Cryptoco... 69 3e-09
R1C2R8_EMIHU (tr|R1C2R8) Uncharacterized protein OS=Emiliania hu... 69 3e-09
B2ADZ3_PODAN (tr|B2ADZ3) DNA-directed RNA polymerase OS=Podospor... 69 3e-09
R1DFU6_EMIHU (tr|R1DFU6) Uncharacterized protein OS=Emiliania hu... 69 3e-09
Q584K3_TRYB2 (tr|Q584K3) DNA-directed RNA polymerase OS=Trypanos... 69 3e-09
M7NUD9_9ASCO (tr|M7NUD9) Uncharacterized protein OS=Pneumocystis... 69 3e-09
Q57YU2_TRYB2 (tr|Q57YU2) DNA-directed RNA polymerase OS=Trypanos... 69 3e-09
Q6FKG9_CANGA (tr|Q6FKG9) DNA-directed RNA polymerase OS=Candida ... 69 3e-09
Q5KFV9_CRYNJ (tr|Q5KFV9) DNA-directed RNA polymerase OS=Cryptoco... 69 3e-09
M9MD47_9BASI (tr|M9MD47) Ngg1-interacting factor 3 protein NIF3L... 69 3e-09
A7TNS6_VANPO (tr|A7TNS6) DNA-directed RNA polymerase OS=Vanderwa... 69 3e-09
E6ZML9_SPORE (tr|E6ZML9) DNA-directed RNA polymerase OS=Sporisor... 69 3e-09
K8EKS8_9CHLO (tr|K8EKS8) DNA-directed RNA polymerase OS=Bathycoc... 69 3e-09
M2QWM8_CERSU (tr|M2QWM8) DNA-directed RNA polymerase OS=Ceripori... 69 3e-09
C5FEK3_ARTOC (tr|C5FEK3) DNA-directed RNA polymerase OS=Arthrode... 69 3e-09
J9VX09_CRYNH (tr|J9VX09) DNA-directed RNA polymerase OS=Cryptoco... 69 3e-09
Q26791_9TRYP (tr|Q26791) DNA-directed RNA polymerase OS=Trypanos... 69 3e-09
C9ZMF2_TRYB9 (tr|C9ZMF2) DNA-directed RNA polymerase OS=Trypanos... 69 3e-09
Q5EM14_9HOMO (tr|Q5EM14) DNA-directed RNA polymerase (Fragment) ... 69 3e-09
Q2TUM4_9MAGN (tr|Q2TUM4) DNA-directed RNA polymerase (Fragment) ... 69 3e-09
I7AAV0_9ASCO (tr|I7AAV0) DNA-directed RNA polymerase (Fragment) ... 69 3e-09
N1NYF1_YEASX (tr|N1NYF1) Rpo31p OS=Saccharomyces cerevisiae CEN.... 69 3e-09
A6ZNW4_YEAS7 (tr|A6ZNW4) DNA-directed RNA polymerase OS=Saccharo... 69 3e-09
L8GXY2_ACACA (tr|L8GXY2) DNA-directed RNA polymerase OS=Acantham... 69 3e-09
L8G0N1_GEOD2 (tr|L8G0N1) DNA-directed RNA polymerase OS=Geomyces... 69 3e-09
I7B529_OGAME (tr|I7B529) DNA-directed RNA polymerase (Fragment) ... 69 3e-09
I7AW69_9ASCO (tr|I7AW69) DNA-directed RNA polymerase (Fragment) ... 69 3e-09
H1YX63_9EURY (tr|H1YX63) DNA-directed RNA polymerase OS=Methanop... 69 3e-09
M0LPF7_HALJP (tr|M0LPF7) DNA-directed RNA polymerase OS=Haloarcu... 69 3e-09
B3A009_HALJP (tr|B3A009) DNA-directed RNA polymerase OS=Haloarcu... 69 3e-09
Q5KGG3_CRYNJ (tr|Q5KGG3) DNA-directed RNA polymerase OS=Cryptoco... 69 3e-09
F5HIN3_CRYNB (tr|F5HIN3) DNA-directed RNA polymerase OS=Cryptoco... 69 3e-09
E7QKQ6_YEASZ (tr|E7QKQ6) DNA-directed RNA polymerase OS=Saccharo... 69 3e-09
E7KII6_YEASA (tr|E7KII6) DNA-directed RNA polymerase OS=Saccharo... 69 3e-09
C8ZI78_YEAS8 (tr|C8ZI78) DNA-directed RNA polymerase OS=Saccharo... 69 3e-09
B5VS07_YEAS6 (tr|B5VS07) DNA-directed RNA polymerase OS=Saccharo... 69 3e-09
B3LJF9_YEAS1 (tr|B3LJF9) DNA-directed RNA polymerase OS=Saccharo... 69 3e-09
G2WMZ2_YEASK (tr|G2WMZ2) DNA-directed RNA polymerase OS=Saccharo... 69 3e-09
C7GMM0_YEAS2 (tr|C7GMM0) DNA-directed RNA polymerase OS=Saccharo... 69 3e-09
Q26794_9TRYP (tr|Q26794) DNA-directed RNA polymerase OS=Trypanos... 69 3e-09
C9ZWN4_TRYB9 (tr|C9ZWN4) DNA-directed RNA polymerase (Fragment) ... 69 3e-09
H2AUV0_KAZAF (tr|H2AUV0) DNA-directed RNA polymerase OS=Kazachst... 69 3e-09
C5DY31_ZYGRC (tr|C5DY31) DNA-directed RNA polymerase OS=Zygosacc... 69 3e-09
M4N8J2_9ASCO (tr|M4N8J2) RNA polymerase I (Fragment) OS=Ascoidea... 69 3e-09
H0GNN4_9SACH (tr|H0GNN4) DNA-directed RNA polymerase OS=Saccharo... 69 3e-09
G0HSR3_HALHT (tr|G0HSR3) DNA-directed RNA polymerase OS=Haloarcu... 69 3e-09
J9IL94_9SPIT (tr|J9IL94) DNA-directed RNA polymerase OS=Oxytrich... 69 3e-09
Q5I2D9_9AGAR (tr|Q5I2D9) DNA-directed RNA polymerase (Fragment) ... 69 3e-09
G0W3I3_NAUDC (tr|G0W3I3) DNA-directed RNA polymerase OS=Naumovoz... 69 3e-09
M0K9Z4_9EURY (tr|M0K9Z4) DNA-directed RNA polymerase OS=Haloarcu... 69 3e-09
M0K2W8_9EURY (tr|M0K2W8) DNA-directed RNA polymerase OS=Haloarcu... 69 3e-09
M0ETA5_9EURY (tr|M0ETA5) DNA-directed RNA polymerase OS=Halorubr... 69 3e-09
M0EBG7_9EURY (tr|M0EBG7) DNA-directed RNA polymerase OS=Halorubr... 69 3e-09
M0KFM1_HALAR (tr|M0KFM1) DNA-directed RNA polymerase OS=Haloarcu... 69 3e-09
I2FUN2_USTH4 (tr|I2FUN2) DNA-directed RNA polymerase OS=Ustilago... 69 3e-09
G8ZUZ8_TORDC (tr|G8ZUZ8) DNA-directed RNA polymerase OS=Torulasp... 69 3e-09
M0PLS6_9EURY (tr|M0PLS6) DNA-directed RNA polymerase OS=Halorubr... 69 3e-09
M0E5E2_9EURY (tr|M0E5E2) DNA-directed RNA polymerase OS=Halorubr... 69 3e-09
N1JNX2_ERYGR (tr|N1JNX2) DNA-directed RNA polymerase III subunit... 69 3e-09
Q5UZR4_HALMA (tr|Q5UZR4) DNA-directed RNA polymerase OS=Haloarcu... 69 3e-09
J9VSQ4_CRYNH (tr|J9VSQ4) DNA-directed RNA polymerase OS=Cryptoco... 69 3e-09
M0JPH8_HALVA (tr|M0JPH8) DNA-directed RNA polymerase OS=Haloarcu... 69 3e-09
I3TDV5_THEC1 (tr|I3TDV5) DNA-directed RNA polymerase OS=Thermogl... 69 4e-09
Q2PYR0_9FUNG (tr|Q2PYR0) DNA-directed RNA polymerase (Fragment) ... 69 4e-09
M0DU71_9EURY (tr|M0DU71) DNA-directed RNA polymerase OS=Halorubr... 69 4e-09
M4N7H2_9ASCO (tr|M4N7H2) RNA polymerase I (Fragment) OS=Ascoidea... 69 4e-09
H0ENG1_GLAL7 (tr|H0ENG1) DNA-directed RNA polymerase OS=Glarea l... 69 4e-09
Q7PMU6_ANOGA (tr|Q7PMU6) DNA-directed RNA polymerase OS=Anophele... 69 4e-09
Q5QHU1_AMAPH (tr|Q5QHU1) DNA-directed RNA polymerase (Fragment) ... 68 4e-09
I7B539_KLUDE (tr|I7B539) DNA-directed RNA polymerase (Fragment) ... 68 4e-09
A4S3M0_OSTLU (tr|A4S3M0) DNA-directed RNA polymerase OS=Ostreoco... 68 4e-09
I2JV22_DEKBR (tr|I2JV22) DNA-directed RNA polymerase (Fragment) ... 68 4e-09
I7B8X8_9ASCO (tr|I7B8X8) DNA-directed RNA polymerase (Fragment) ... 68 4e-09
M0KZS6_9EURY (tr|M0KZS6) DNA-directed RNA polymerase OS=Haloarcu... 68 4e-09
B6QI35_PENMQ (tr|B6QI35) DNA-directed RNA polymerase OS=Penicill... 68 4e-09
M0DS44_9EURY (tr|M0DS44) DNA-directed RNA polymerase OS=Halorubr... 68 4e-09
K0KNL6_WICCF (tr|K0KNL6) DNA-directed RNA polymerase OS=Wickerha... 68 4e-09
M0FHG3_9EURY (tr|M0FHG3) DNA-directed RNA polymerase OS=Halorubr... 68 4e-09
J4HY00_FIBRA (tr|J4HY00) DNA-directed RNA polymerase OS=Fibropor... 68 4e-09
N6TMN4_9CUCU (tr|N6TMN4) Uncharacterized protein (Fragment) OS=D... 68 4e-09
I7B5D9_DIPMG (tr|I7B5D9) DNA-directed RNA polymerase (Fragment) ... 68 4e-09
I7AAX3_DEKBR (tr|I7AAX3) DNA-directed RNA polymerase (Fragment) ... 68 4e-09
I7B5C3_9ASCO (tr|I7B5C3) DNA-directed RNA polymerase (Fragment) ... 68 4e-09
B1L739_KORCO (tr|B1L739) DNA-directed RNA polymerase OS=Korarcha... 68 4e-09
M0NTY8_9EURY (tr|M0NTY8) DNA-directed RNA polymerase OS=Halorubr... 68 4e-09
G8Y2U0_PICSO (tr|G8Y2U0) DNA-directed RNA polymerase OS=Pichia s... 68 4e-09
I7A037_CANBO (tr|I7A037) DNA-directed RNA polymerase (Fragment) ... 68 4e-09
I7AB28_9ASCO (tr|I7AB28) DNA-directed RNA polymerase (Fragment) ... 68 4e-09
A5H2E6_9LECA (tr|A5H2E6) DNA-directed RNA polymerase (Fragment) ... 68 5e-09
I7A0A2_9ASCO (tr|I7A0A2) DNA-directed RNA polymerase (Fragment) ... 68 5e-09
I1L748_SOYBN (tr|I1L748) DNA-directed RNA polymerase OS=Glycine ... 68 5e-09
Q16PD2_AEDAE (tr|Q16PD2) DNA-directed RNA polymerase OS=Aedes ae... 68 5e-09
C5YE51_SORBI (tr|C5YE51) DNA-directed RNA polymerase OS=Sorghum ... 68 5e-09
N9TFU8_ENTHI (tr|N9TFU8) DNA-directed RNA polymerase III largest... 68 5e-09
M7WZY8_ENTHI (tr|M7WZY8) DNA-directed RNA polymerase III largest... 68 5e-09
M3TQY3_ENTHI (tr|M3TQY3) DNA-directed RNA polymerase OS=Entamoeb... 68 5e-09
M2RMP1_ENTHI (tr|M2RMP1) DNA-directed RNA polymerase OS=Entamoeb... 68 5e-09
C4M626_ENTHI (tr|C4M626) DNA-directed RNA polymerase OS=Entamoeb... 68 5e-09
K2GGB7_ENTNP (tr|K2GGB7) DNA-directed RNA polymerase OS=Entamoeb... 68 5e-09
Q16SE0_AEDAE (tr|Q16SE0) DNA-directed RNA polymerase OS=Aedes ae... 68 5e-09
I7B543_9SACH (tr|I7B543) DNA-directed RNA polymerase (Fragment) ... 68 5e-09
A1YIB5_9FUNG (tr|A1YIB5) DNA-directed RNA polymerase (Fragment) ... 68 5e-09
J7S636_KAZNA (tr|J7S636) DNA-directed RNA polymerase OS=Kazachst... 68 5e-09
B0EG66_ENTDS (tr|B0EG66) DNA-directed RNA polymerase OS=Entamoeb... 68 5e-09
R9ADA8_WALIC (tr|R9ADA8) DNA-directed RNA polymerase III subunit... 68 5e-09
C1E5P6_MICSR (tr|C1E5P6) DNA-directed RNA polymerase OS=Micromon... 68 5e-09
Q2PYR5_9FUNG (tr|Q2PYR5) DNA-directed RNA polymerase (Fragment) ... 68 5e-09
I7A0A9_9ASCO (tr|I7A0A9) DNA-directed RNA polymerase (Fragment) ... 68 5e-09
G0V8Z9_NAUCC (tr|G0V8Z9) DNA-directed RNA polymerase OS=Naumovoz... 68 6e-09
Q2PYR7_SMICU (tr|Q2PYR7) DNA-directed RNA polymerase (Fragment) ... 68 6e-09
A1YIB6_9FUNG (tr|A1YIB6) DNA-directed RNA polymerase (Fragment) ... 68 6e-09
Q756K2_ASHGO (tr|Q756K2) DNA-directed RNA polymerase OS=Ashbya g... 68 6e-09
M9N5P0_ASHGS (tr|M9N5P0) FAER252Cp OS=Ashbya gossypii FDAG1 GN=F... 68 6e-09
I7B975_LIPST (tr|I7B975) DNA-directed RNA polymerase (Fragment) ... 68 6e-09
A1YIB2_SMICU (tr|A1YIB2) DNA-directed RNA polymerase (Fragment) ... 68 6e-09
Q9C428_9FUNG (tr|Q9C428) DNA-directed RNA polymerase (Fragment) ... 68 6e-09
M0P348_9EURY (tr|M0P348) DNA-directed RNA polymerase OS=Halorubr... 68 6e-09
G0TZQ4_TRYVY (tr|G0TZQ4) DNA-directed RNA polymerase (Fragment) ... 68 6e-09
I7AAV6_ZYGRO (tr|I7AAV6) DNA-directed RNA polymerase (Fragment) ... 68 6e-09
E6R7B9_CRYGW (tr|E6R7B9) DNA-directed RNA polymerase OS=Cryptoco... 68 6e-09
G0LF90_HALWC (tr|G0LF90) DNA-directed RNA polymerase OS=Haloquad... 68 6e-09
A9A9V0_METM6 (tr|A9A9V0) DNA-directed RNA polymerase OS=Methanoc... 68 6e-09
A6VGU9_METM7 (tr|A6VGU9) DNA-directed RNA polymerase OS=Methanoc... 68 6e-09
F8S1G8_9EUKA (tr|F8S1G8) DNA-directed RNA polymerase (Fragment) ... 68 6e-09
Q6LXI8_METMP (tr|Q6LXI8) DNA-directed RNA polymerase OS=Methanoc... 68 6e-09
G0H227_METMI (tr|G0H227) DNA-directed RNA polymerase OS=Methanoc... 68 6e-09
>K7M0Q7_SOYBN (tr|K7M0Q7) DNA-directed RNA polymerase OS=Glycine max PE=3 SV=1
Length = 2020
Score = 591 bits (1524), Expect = e-166, Method: Compositional matrix adjust.
Identities = 275/340 (80%), Positives = 311/340 (91%), Gaps = 1/340 (0%)
Query: 1 MESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQDIE 60
MES+F+ GFSV L +FSIS A+KR+ R+IGK S LLYQLR +YNELVAQQLEKH+QD+E
Sbjct: 613 MESLFAEGFSVSLEEFSISRAIKRIIRRSIGKASSLLYQLRSLYNELVAQQLEKHIQDVE 672
Query: 61 LPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKL 120
LP I F KS++LGD+IDSKSKS +DKV QQ+GFLGQQLF RGR YSKGL++DVASHF
Sbjct: 673 LPIINFALKSTKLGDLIDSKSKSTIDKVVQQVGFLGQQLFDRGRFYSKGLVDDVASHFHA 732
Query: 121 KCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMA 180
KC YDGDGYPSAEYGLL+GCFF+GLDP+EE+VHSISTREIMVRSSRGLSEPGTLFKNLMA
Sbjct: 733 KCCYDGDGYPSAEYGLLKGCFFNGLDPYEEMVHSISTREIMVRSSRGLSEPGTLFKNLMA 792
Query: 181 ILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGDKTRYLFPAGEPVGVLAATSMSNPAYKAV 240
ILRDVV+CYDGTVRN+CSNSIIQFEYG++AGDKT +LFPAGEPVGVLAAT+MSNPAYKAV
Sbjct: 793 ILRDVVICYDGTVRNICSNSIIQFEYGIQAGDKTEHLFPAGEPVGVLAATAMSNPAYKAV 852
Query: 241 LDASPSSSCSWELMKEILLCKVNFRNEPIDRRVILYLNDCDCGRRYCRENAAYIVKNQLR 300
LDASP+S+ SWELMKEILLCKVNFRNEP+DRRVILYLNDCDCG CRENAAY VKNQLR
Sbjct: 853 LDASPNSNSSWELMKEILLCKVNFRNEPVDRRVILYLNDCDCGGSCCRENAAYSVKNQLR 912
Query: 301 KVSLKDTAVDFIVEYQQQR-KREGSETDAGLVGHIHLDEV 339
KVSLK+ AV+FI+EYQQQR ++E SETDAGLVGHI+LDE+
Sbjct: 913 KVSLKNAAVEFIIEYQQQRTQKENSETDAGLVGHIYLDEM 952
>K7MDF5_SOYBN (tr|K7MDF5) DNA-directed RNA polymerase OS=Glycine max PE=3 SV=1
Length = 2082
Score = 587 bits (1512), Expect = e-165, Method: Compositional matrix adjust.
Identities = 275/340 (80%), Positives = 312/340 (91%), Gaps = 1/340 (0%)
Query: 1 MESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQDIE 60
MES+F+ GFSV L +FSIS A+KR+ ++IGKVS LLYQLR +YNELVAQQLEKH++D+E
Sbjct: 613 MESLFAEGFSVSLEEFSISRAIKRIIRKSIGKVSSLLYQLRSLYNELVAQQLEKHIRDVE 672
Query: 61 LPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKL 120
LP I F KS++LGD+IDSKSKSA+DKV QQIGFLGQQLF RGR YSKGL++DVASHF
Sbjct: 673 LPIINFALKSTKLGDLIDSKSKSAIDKVVQQIGFLGQQLFDRGRFYSKGLVDDVASHFHA 732
Query: 121 KCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMA 180
KC YDGDGYPSAEYGLL+GCFF+GLDP+EE+VHSISTREIMVRSSRGLSEPGTLFKNLMA
Sbjct: 733 KCCYDGDGYPSAEYGLLKGCFFNGLDPYEEMVHSISTREIMVRSSRGLSEPGTLFKNLMA 792
Query: 181 ILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGDKTRYLFPAGEPVGVLAATSMSNPAYKAV 240
ILRDVV+CYDGTVRN+CSNSIIQFEYG++AGDK+ +LFPAGEPVGVLAAT+MSNPAYKAV
Sbjct: 793 ILRDVVICYDGTVRNICSNSIIQFEYGIQAGDKSEHLFPAGEPVGVLAATAMSNPAYKAV 852
Query: 241 LDASPSSSCSWELMKEILLCKVNFRNEPIDRRVILYLNDCDCGRRYCRENAAYIVKNQLR 300
LDASPSS+ SWELMKEILLCKVNFRNE +DRRVILYLNDCDCG YCRENAAY VK+QLR
Sbjct: 853 LDASPSSNSSWELMKEILLCKVNFRNELVDRRVILYLNDCDCGGSYCRENAAYSVKDQLR 912
Query: 301 KVSLKDTAVDFIVEYQQQR-KREGSETDAGLVGHIHLDEV 339
KVSLKD AV+FI+EYQQQR ++E SETD GLVGHI+LDE+
Sbjct: 913 KVSLKDAAVEFIIEYQQQRTQKENSETDVGLVGHIYLDEM 952
>I1MIR6_SOYBN (tr|I1MIR6) DNA-directed RNA polymerase OS=Glycine max PE=3 SV=2
Length = 2098
Score = 587 bits (1512), Expect = e-165, Method: Compositional matrix adjust.
Identities = 275/340 (80%), Positives = 312/340 (91%), Gaps = 1/340 (0%)
Query: 1 MESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQDIE 60
MES+F+ GFSV L +FSIS A+KR+ ++IGKVS LLYQLR +YNELVAQQLEKH++D+E
Sbjct: 613 MESLFAEGFSVSLEEFSISRAIKRIIRKSIGKVSSLLYQLRSLYNELVAQQLEKHIRDVE 672
Query: 61 LPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKL 120
LP I F KS++LGD+IDSKSKSA+DKV QQIGFLGQQLF RGR YSKGL++DVASHF
Sbjct: 673 LPIINFALKSTKLGDLIDSKSKSAIDKVVQQIGFLGQQLFDRGRFYSKGLVDDVASHFHA 732
Query: 121 KCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMA 180
KC YDGDGYPSAEYGLL+GCFF+GLDP+EE+VHSISTREIMVRSSRGLSEPGTLFKNLMA
Sbjct: 733 KCCYDGDGYPSAEYGLLKGCFFNGLDPYEEMVHSISTREIMVRSSRGLSEPGTLFKNLMA 792
Query: 181 ILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGDKTRYLFPAGEPVGVLAATSMSNPAYKAV 240
ILRDVV+CYDGTVRN+CSNSIIQFEYG++AGDK+ +LFPAGEPVGVLAAT+MSNPAYKAV
Sbjct: 793 ILRDVVICYDGTVRNICSNSIIQFEYGIQAGDKSEHLFPAGEPVGVLAATAMSNPAYKAV 852
Query: 241 LDASPSSSCSWELMKEILLCKVNFRNEPIDRRVILYLNDCDCGRRYCRENAAYIVKNQLR 300
LDASPSS+ SWELMKEILLCKVNFRNE +DRRVILYLNDCDCG YCRENAAY VK+QLR
Sbjct: 853 LDASPSSNSSWELMKEILLCKVNFRNELVDRRVILYLNDCDCGGSYCRENAAYSVKDQLR 912
Query: 301 KVSLKDTAVDFIVEYQQQR-KREGSETDAGLVGHIHLDEV 339
KVSLKD AV+FI+EYQQQR ++E SETD GLVGHI+LDE+
Sbjct: 913 KVSLKDAAVEFIIEYQQQRTQKENSETDVGLVGHIYLDEM 952
>K7MDF9_SOYBN (tr|K7MDF9) DNA-directed RNA polymerase OS=Glycine max PE=3 SV=1
Length = 2049
Score = 586 bits (1511), Expect = e-165, Method: Compositional matrix adjust.
Identities = 275/340 (80%), Positives = 312/340 (91%), Gaps = 1/340 (0%)
Query: 1 MESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQDIE 60
MES+F+ GFSV L +FSIS A+KR+ ++IGKVS LLYQLR +YNELVAQQLEKH++D+E
Sbjct: 613 MESLFAEGFSVSLEEFSISRAIKRIIRKSIGKVSSLLYQLRSLYNELVAQQLEKHIRDVE 672
Query: 61 LPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKL 120
LP I F KS++LGD+IDSKSKSA+DKV QQIGFLGQQLF RGR YSKGL++DVASHF
Sbjct: 673 LPIINFALKSTKLGDLIDSKSKSAIDKVVQQIGFLGQQLFDRGRFYSKGLVDDVASHFHA 732
Query: 121 KCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMA 180
KC YDGDGYPSAEYGLL+GCFF+GLDP+EE+VHSISTREIMVRSSRGLSEPGTLFKNLMA
Sbjct: 733 KCCYDGDGYPSAEYGLLKGCFFNGLDPYEEMVHSISTREIMVRSSRGLSEPGTLFKNLMA 792
Query: 181 ILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGDKTRYLFPAGEPVGVLAATSMSNPAYKAV 240
ILRDVV+CYDGTVRN+CSNSIIQFEYG++AGDK+ +LFPAGEPVGVLAAT+MSNPAYKAV
Sbjct: 793 ILRDVVICYDGTVRNICSNSIIQFEYGIQAGDKSEHLFPAGEPVGVLAATAMSNPAYKAV 852
Query: 241 LDASPSSSCSWELMKEILLCKVNFRNEPIDRRVILYLNDCDCGRRYCRENAAYIVKNQLR 300
LDASPSS+ SWELMKEILLCKVNFRNE +DRRVILYLNDCDCG YCRENAAY VK+QLR
Sbjct: 853 LDASPSSNSSWELMKEILLCKVNFRNELVDRRVILYLNDCDCGGSYCRENAAYSVKDQLR 912
Query: 301 KVSLKDTAVDFIVEYQQQR-KREGSETDAGLVGHIHLDEV 339
KVSLKD AV+FI+EYQQQR ++E SETD GLVGHI+LDE+
Sbjct: 913 KVSLKDAAVEFIIEYQQQRTQKENSETDVGLVGHIYLDEM 952
>K7MDF7_SOYBN (tr|K7MDF7) DNA-directed RNA polymerase OS=Glycine max PE=3 SV=1
Length = 2065
Score = 586 bits (1510), Expect = e-165, Method: Compositional matrix adjust.
Identities = 275/340 (80%), Positives = 312/340 (91%), Gaps = 1/340 (0%)
Query: 1 MESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQDIE 60
MES+F+ GFSV L +FSIS A+KR+ ++IGKVS LLYQLR +YNELVAQQLEKH++D+E
Sbjct: 613 MESLFAEGFSVSLEEFSISRAIKRIIRKSIGKVSSLLYQLRSLYNELVAQQLEKHIRDVE 672
Query: 61 LPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKL 120
LP I F KS++LGD+IDSKSKSA+DKV QQIGFLGQQLF RGR YSKGL++DVASHF
Sbjct: 673 LPIINFALKSTKLGDLIDSKSKSAIDKVVQQIGFLGQQLFDRGRFYSKGLVDDVASHFHA 732
Query: 121 KCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMA 180
KC YDGDGYPSAEYGLL+GCFF+GLDP+EE+VHSISTREIMVRSSRGLSEPGTLFKNLMA
Sbjct: 733 KCCYDGDGYPSAEYGLLKGCFFNGLDPYEEMVHSISTREIMVRSSRGLSEPGTLFKNLMA 792
Query: 181 ILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGDKTRYLFPAGEPVGVLAATSMSNPAYKAV 240
ILRDVV+CYDGTVRN+CSNSIIQFEYG++AGDK+ +LFPAGEPVGVLAAT+MSNPAYKAV
Sbjct: 793 ILRDVVICYDGTVRNICSNSIIQFEYGIQAGDKSEHLFPAGEPVGVLAATAMSNPAYKAV 852
Query: 241 LDASPSSSCSWELMKEILLCKVNFRNEPIDRRVILYLNDCDCGRRYCRENAAYIVKNQLR 300
LDASPSS+ SWELMKEILLCKVNFRNE +DRRVILYLNDCDCG YCRENAAY VK+QLR
Sbjct: 853 LDASPSSNSSWELMKEILLCKVNFRNELVDRRVILYLNDCDCGGSYCRENAAYSVKDQLR 912
Query: 301 KVSLKDTAVDFIVEYQQQR-KREGSETDAGLVGHIHLDEV 339
KVSLKD AV+FI+EYQQQR ++E SETD GLVGHI+LDE+
Sbjct: 913 KVSLKDAAVEFIIEYQQQRTQKENSETDVGLVGHIYLDEM 952
>G7LG09_MEDTR (tr|G7LG09) DNA-directed RNA polymerase OS=Medicago truncatula
GN=MTR_8g038990 PE=3 SV=1
Length = 2032
Score = 577 bits (1487), Expect = e-162, Method: Compositional matrix adjust.
Identities = 275/339 (81%), Positives = 305/339 (89%)
Query: 1 MESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQDIE 60
ME+IF++GFSVGL DFSIS AVKRV +R+IGKVSPLL QLR +Y ELVAQQLEK +QDIE
Sbjct: 695 MENIFAHGFSVGLQDFSISRAVKRVINRSIGKVSPLLRQLRGMYKELVAQQLEKVIQDIE 754
Query: 61 LPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKL 120
LP I F KS++LGD+IDSKSKSA+DKV QQIGFLGQQLF RG+ YSKGL+EDVASHF+L
Sbjct: 755 LPVINFALKSTKLGDLIDSKSKSAVDKVIQQIGFLGQQLFERGKFYSKGLVEDVASHFQL 814
Query: 121 KCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMA 180
KC YD D YPSAE+GLL+GCFFHGLDP+EELVHSI+TREI+ RSSRGLSEPGTLFKNLMA
Sbjct: 815 KCFYDKDDYPSAEFGLLKGCFFHGLDPYEELVHSIATREIIDRSSRGLSEPGTLFKNLMA 874
Query: 181 ILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGDKTRYLFPAGEPVGVLAATSMSNPAYKAV 240
ILRDVV+CYDGTVRNVCSNSIIQFEYG+++GD ++LFPAGEPVGVLAATSMSNPAYKAV
Sbjct: 875 ILRDVVICYDGTVRNVCSNSIIQFEYGIQSGDAAQHLFPAGEPVGVLAATSMSNPAYKAV 934
Query: 241 LDASPSSSCSWELMKEILLCKVNFRNEPIDRRVILYLNDCDCGRRYCRENAAYIVKNQLR 300
LDASPSS+ SW MKEILLCKVNFRNEP DRRVILYLNDCDCGR YCRENAAY+V+NQLR
Sbjct: 935 LDASPSSNSSWGFMKEILLCKVNFRNEPNDRRVILYLNDCDCGRNYCRENAAYLVQNQLR 994
Query: 301 KVSLKDTAVDFIVEYQQQRKREGSETDAGLVGHIHLDEV 339
KVSLKD A+DFIVEYQQQR+R DAGLV HI L EV
Sbjct: 995 KVSLKDAALDFIVEYQQQRRRRDGTEDAGLVCHIRLKEV 1033
>F6I5R3_VITVI (tr|F6I5R3) DNA-directed RNA polymerase OS=Vitis vinifera
GN=VIT_13s0067g03120 PE=3 SV=1
Length = 996
Score = 475 bits (1223), Expect = e-132, Method: Compositional matrix adjust.
Identities = 233/340 (68%), Positives = 280/340 (82%), Gaps = 1/340 (0%)
Query: 1 MESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQDIE 60
ME++FS GFSV L DFSI V + +N+ +S LLY LR +YNEL+ Q E H++ +
Sbjct: 609 MENLFSEGFSVSLEDFSIPSEVTQNIQKNVEDISSLLYNLRSMYNELLQLQAENHLRLTK 668
Query: 61 LPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKL 120
+P F+ SS LG++IDSKS SA++KV QQIGFLGQQL +G+ YS+ L+E +A FK
Sbjct: 669 VPVANFILNSSALGNLIDSKSDSAINKVVQQIGFLGQQLSEKGKFYSRTLVEGMAYLFKS 728
Query: 121 KCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMA 180
K + G YPS E+GL+R CFFHGLDP+EE+VHSISTREI+VRSSRGLSEPGTLFKNLMA
Sbjct: 729 KYPFHGADYPSGEFGLIRSCFFHGLDPYEEMVHSISTREIIVRSSRGLSEPGTLFKNLMA 788
Query: 181 ILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGDKTRYLFPAGEPVGVLAATSMSNPAYKAV 240
ILRDVV+CYDGTVRNVCSNSIIQFEYGVKA K ++ FPAGEPVGVLAAT+MSNPAYKAV
Sbjct: 789 ILRDVVICYDGTVRNVCSNSIIQFEYGVKARTKPQHFFPAGEPVGVLAATAMSNPAYKAV 848
Query: 241 LDASPSSSCSWELMKEILLCKVNFRNEPIDRRVILYLNDCDCGRRYCRENAAYIVKNQLR 300
LD+SPSS+ SWELMKEILLC+VNF+N+ IDRRVILYLNDCDCGR+YCRENAAY+VKNQL+
Sbjct: 849 LDSSPSSNSSWELMKEILLCQVNFKNDLIDRRVILYLNDCDCGRKYCRENAAYLVKNQLK 908
Query: 301 KVSLKDTAVDFIVEYQQQRKREG-SETDAGLVGHIHLDEV 339
K SLKDTAV+F++EY +Q G SE GLVGHIHL+++
Sbjct: 909 KASLKDTAVEFMIEYVKQHAVSGSSEPGTGLVGHIHLNKL 948
>M5XM01_PRUPE (tr|M5XM01) Uncharacterized protein OS=Prunus persica
GN=PRUPE_ppa000088mg PE=4 SV=1
Length = 1855
Score = 473 bits (1218), Expect = e-131, Method: Compositional matrix adjust.
Identities = 233/341 (68%), Positives = 276/341 (80%), Gaps = 6/341 (1%)
Query: 1 MESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQDIE 60
ME++FS GFSVGL DF +S + +NI S LLY LR YNE V QL+ ++ ++
Sbjct: 612 MENLFSEGFSVGLEDFYMSRTSIQDIQKNIQDSSDLLYHLRSTYNEFVEFQLQNRIRSVK 671
Query: 61 LPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVAS--HF 118
+P F+ +SS LGD+IDSKS SA++K+ QQIGFLG QL +GR YSK L+EDVAS H
Sbjct: 672 VPVSHFILESSALGDLIDSKSDSAINKIVQQIGFLGLQLSDKGRFYSKTLVEDVASLCHS 731
Query: 119 KLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNL 178
K D D YPSAEYGL++ CFFHGLDP+E +VHSI+TRE++VRSSRGLSEPGTLFKNL
Sbjct: 732 KYPSDID---YPSAEYGLVQSCFFHGLDPYEAIVHSIATREVIVRSSRGLSEPGTLFKNL 788
Query: 179 MAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGDKTRYLFPAGEPVGVLAATSMSNPAYK 238
MAILRDVV+CYDGTVRNVCSNSIIQFEYGV G + ++LFPAGEPVGVLAAT+MSNPAYK
Sbjct: 789 MAILRDVVICYDGTVRNVCSNSIIQFEYGVNIGSRPQHLFPAGEPVGVLAATAMSNPAYK 848
Query: 239 AVLDASPSSSCSWELMKEILLCKVNFRNEPIDRRVILYLNDCDCGRRYCRENAAYIVKNQ 298
AVLD++PSS+ SWELMKEILLCKVNF+NE IDRRVILYLN+C CGR+YCRE AA +VKNQ
Sbjct: 849 AVLDSTPSSNSSWELMKEILLCKVNFKNELIDRRVILYLNNCGCGRKYCRERAACLVKNQ 908
Query: 299 LRKVSLKDTAVDFIVEYQQQRKREGSE-TDAGLVGHIHLDE 338
L+KVSLKDTAV+F++EY Q GS DAGLVGHIHL+E
Sbjct: 909 LKKVSLKDTAVEFMIEYNNQLSGLGSLINDAGLVGHIHLNE 949
>B9RGA8_RICCO (tr|B9RGA8) DNA-directed RNA polymerase OS=Ricinus communis
GN=RCOM_1452510 PE=3 SV=1
Length = 991
Score = 446 bits (1147), Expect = e-123, Method: Compositional matrix adjust.
Identities = 221/339 (65%), Positives = 265/339 (78%), Gaps = 5/339 (1%)
Query: 1 MESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQDIE 60
MES+FS GFSVGL DF IS A T R+ +S LL QLR YNEL+A QLE H++ +
Sbjct: 612 MESLFSEGFSVGLEDFYISRAAIGGTRRDFKVISSLLSQLRSTYNELMALQLENHIRRAK 671
Query: 61 LPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKL 120
LP F+ + S +GD+ID KS SA+ KV QQIGFLG Q+ RG+ Y+K L+ED+A HF+
Sbjct: 672 LPVADFIVRLSSIGDLIDYKSDSAMTKVVQQIGFLGLQISDRGKFYTKTLVEDMALHFES 731
Query: 121 KCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMA 180
K D D YPSA++GL++ CFFHGLDP+EE+VHSIS RE+MVRS+RGLSEPGTLFKNLMA
Sbjct: 732 KYPSDID-YPSAKHGLIQSCFFHGLDPYEEMVHSISAREVMVRSTRGLSEPGTLFKNLMA 790
Query: 181 ILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGDKTRYLFPAGEPVGVLAATSMSNPAYKAV 240
ILRDVV+CYDGTVRNVCSNSIIQFEYG+KAG K + LFPAGEPVGVLAAT+MSNPAYKAV
Sbjct: 791 ILRDVVICYDGTVRNVCSNSIIQFEYGMKAGIKAQSLFPAGEPVGVLAATAMSNPAYKAV 850
Query: 241 LDASPSSSCSWELMKEILLCKVNFRNEPIDRRVILYLNDCDCGRRYCRENAAYIVKNQLR 300
LD++PSS+ SWELMKEIL C+VNF+N+ DRRVILY N C CG+ YC+E AY VKN L
Sbjct: 851 LDSTPSSNSSWELMKEILQCRVNFKNDITDRRVILYFNYCGCGKFYCQERLAYSVKNHLE 910
Query: 301 KVSLKDTAVDFIVEYQQQRKREGSETDAGLVGHIHLDEV 339
KV LKD A+ F+ EY+ Q + DAGLVGH+HL +
Sbjct: 911 KVILKDIALCFMCEYKSQ----PTIADAGLVGHVHLKKT 945
>Q5D868_SPIOL (tr|Q5D868) DNA-directed RNA polymerase (Fragment) OS=Spinacia
oleracea GN=NRPD1b PE=2 SV=1
Length = 1902
Score = 439 bits (1128), Expect = e-121, Method: Compositional matrix adjust.
Identities = 211/338 (62%), Positives = 268/338 (79%), Gaps = 3/338 (0%)
Query: 1 MESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQDIE 60
ME++FS GFSV LHDF + + RNI +SPLL QLR +NELV Q E H+++ +
Sbjct: 410 MENLFSEGFSVSLHDFFFPKSELQNIQRNIQDLSPLLLQLRSSFNELVQVQFENHIREFK 469
Query: 61 LPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKL 120
P F+ SS LG MIDS+S SA+DK+ QQIGFLG QL R + YS+GL+EDVAS F
Sbjct: 470 SPVGNFILISSALGSMIDSRSDSAIDKIVQQIGFLGLQLSDRRKFYSRGLVEDVASLFHQ 529
Query: 121 KCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMA 180
K + D YPS E+G + CFFHGLDP+EE+VHSI+TRE++VRSS+GL+EPGTLFKNLMA
Sbjct: 530 KYPF-ADVYPSEEFGFVSRCFFHGLDPYEEIVHSIATREVIVRSSKGLAEPGTLFKNLMA 588
Query: 181 ILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGDKTRYLFPAGEPVGVLAATSMSNPAYKAV 240
+LRDVV+CYDGTVRN+ SNS+IQFEYGV G +++ LFPAG+PVGVLAAT+MSNPAYKAV
Sbjct: 589 VLRDVVICYDGTVRNISSNSVIQFEYGV-GGMQSQNLFPAGDPVGVLAATAMSNPAYKAV 647
Query: 241 LDASPSSSCSWELMKEILLCKVNFRNEPIDRRVILYLNDCDCGRRYCRENAAYIVKNQLR 300
LD+SP+S+ SW++MKEIL C+ NFRN+ DRRVILYLNDC CGR+YC+ENA+ +VKN L+
Sbjct: 648 LDSSPNSNSSWDMMKEILFCRANFRNDINDRRVILYLNDCCCGRKYCQENASCLVKNHLK 707
Query: 301 KVSLKDTAVDFIVEYQQQR-KREGSETDAGLVGHIHLD 337
KVSL+D A++ +EY++ + + E E DAGLVGHIHL+
Sbjct: 708 KVSLRDAAIELAIEYKRPKLEPESCEIDAGLVGHIHLN 745
>B9GWX9_POPTR (tr|B9GWX9) DNA-directed RNA polymerase OS=Populus trichocarpa
GN=NRPD903 PE=3 SV=1
Length = 924
Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust.
Identities = 211/314 (67%), Positives = 255/314 (81%)
Query: 1 MESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQDIE 60
ME++FS GFSV L DFSIS AVK+ + +SPLL LR +NELV Q+E H++D++
Sbjct: 611 MENLFSEGFSVSLEDFSISRAVKQRIPESFKAISPLLCNLRSTFNELVELQVENHIRDVK 670
Query: 61 LPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKL 120
P +F+ SS LG +IDSKS +A+ KV QQIGFLG Q+ RG+LYSK L+ED+ASHF
Sbjct: 671 QPVREFILTSSALGYLIDSKSDAAVTKVVQQIGFLGLQVSDRGKLYSKTLVEDLASHFLS 730
Query: 121 KCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMA 180
K + YPSA+YGL++ FFHGLD +EE+ HSISTRE++VRSSRGLSEPGTLFKNLMA
Sbjct: 731 KYPANLFDYPSAQYGLIQNSFFHGLDAYEEMAHSISTREVIVRSSRGLSEPGTLFKNLMA 790
Query: 181 ILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGDKTRYLFPAGEPVGVLAATSMSNPAYKAV 240
ILRDVV+CYDGTVRNV SNSIIQFEYGVK G +++ LFPAGEPVGVLAAT+MSNPAYKAV
Sbjct: 791 ILRDVVICYDGTVRNVSSNSIIQFEYGVKVGTESQSLFPAGEPVGVLAATAMSNPAYKAV 850
Query: 241 LDASPSSSCSWELMKEILLCKVNFRNEPIDRRVILYLNDCDCGRRYCRENAAYIVKNQLR 300
LD++PSS+CSW++MKEILLCKV F+N+ DRRVILYLNDC CGR YC+E AAY+VKN L
Sbjct: 851 LDSTPSSNCSWDMMKEILLCKVGFKNDLADRRVILYLNDCGCGRNYCQERAAYLVKNHLE 910
Query: 301 KVSLKDTAVDFIVE 314
KVSLKD A F++E
Sbjct: 911 KVSLKDIAKCFMIE 924
>B9GM06_POPTR (tr|B9GM06) DNA-directed RNA polymerase OS=Populus trichocarpa
GN=NRPD902 PE=3 SV=1
Length = 842
Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust.
Identities = 207/314 (65%), Positives = 253/314 (80%)
Query: 1 MESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQDIE 60
ME++FS GFSV L DFSIS AVK+ + +SPLL LR YNELV Q+E H+QD++
Sbjct: 529 MENLFSEGFSVSLKDFSISQAVKQSIQESFKVISPLLCNLRSTYNELVELQVENHIQDVK 588
Query: 61 LPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKL 120
P ++F+ SS LG +IDSKS A+ K+ QQIGFLG Q+ RG+LYSK L+ED+ASHF+
Sbjct: 589 TPVLEFILTSSALGYLIDSKSDGAVAKLVQQIGFLGLQVSDRGKLYSKTLVEDLASHFQS 648
Query: 121 KCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMA 180
K + YPSA+YGL++ FFHGLD +EE+ HSISTRE++VRSSRGLSEPGTLFKNLMA
Sbjct: 649 KYPTNLLNYPSAQYGLIQSSFFHGLDAYEEMAHSISTREVIVRSSRGLSEPGTLFKNLMA 708
Query: 181 ILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGDKTRYLFPAGEPVGVLAATSMSNPAYKAV 240
ILRDVV+CYDGTVRNVCSNSIIQ EYGVK G +++ LFPAGEPVGVLAAT+MSNPAYKAV
Sbjct: 709 ILRDVVICYDGTVRNVCSNSIIQSEYGVKVGAESQSLFPAGEPVGVLAATAMSNPAYKAV 768
Query: 241 LDASPSSSCSWELMKEILLCKVNFRNEPIDRRVILYLNDCDCGRRYCRENAAYIVKNQLR 300
LD++PSS+ SW++MKEILLCKV F+N+ DRRVILY N C CGR +C+E AA++VKN L
Sbjct: 769 LDSTPSSNSSWDMMKEILLCKVGFKNDQADRRVILYFNYCGCGREHCQEKAAFLVKNHLE 828
Query: 301 KVSLKDTAVDFIVE 314
KVSLKD A F++E
Sbjct: 829 KVSLKDVAKCFMIE 842
>K4B027_SOLLC (tr|K4B027) DNA-directed RNA polymerase OS=Solanum lycopersicum
GN=Solyc01g096390.2 PE=3 SV=1
Length = 1678
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 204/339 (60%), Positives = 256/339 (75%), Gaps = 2/339 (0%)
Query: 1 MESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQDIE 60
ME++ + GFS+ L DF ++ AV+ I +S LL+ LR YNE V QLE H+++ +
Sbjct: 656 MENLCTEGFSISLRDFYMTKAVRDGIQERIQCMSKLLHHLRSSYNESVEVQLEHHLRNEK 715
Query: 61 LPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKL 120
LP I FV KSS +G +IDSKS+SA +KV QQIGFLG Q+ RG+ Y+K L+ D+A F+
Sbjct: 716 LPVIDFVLKSSGMGVLIDSKSESAFNKVVQQIGFLGLQISDRGKFYTKTLVHDMAQLFQK 775
Query: 121 KCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMA 180
K G PS E+GL+R C F+GLDP++ ++HSIS+RE++VRS+RGL+EPGTLFKNLMA
Sbjct: 776 KYPSVGTN-PSEEFGLVRSCLFYGLDPYQGMIHSISSREVIVRSTRGLTEPGTLFKNLMA 834
Query: 181 ILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGDKTRYLFPAGEPVGVLAATSMSNPAYKAV 240
ILRDVV+CYDGTVRNV SNSIIQFEYG G F AG+PVGVLAAT+MSNPAYKAV
Sbjct: 835 ILRDVVICYDGTVRNVSSNSIIQFEYGSSGGSNLPSEFCAGDPVGVLAATAMSNPAYKAV 894
Query: 241 LDASPSSSCSWELMKEILLCKVNFRNEPIDRRVILYLNDCDCGRRYCRENAAYIVKNQLR 300
LD+SPSS+ SWE+MKEILLC V+F+N+ DRRVILYLNDC C R YCRE AAY+VKN L
Sbjct: 895 LDSSPSSNSSWEMMKEILLCGVSFKNDVSDRRVILYLNDCGCRRGYCREKAAYVVKNHLS 954
Query: 301 KVSLKDTAVDFIVEYQ-QQRKREGSETDAGLVGHIHLDE 338
KV LKD A +F++EY +Q E SET GL+GHI L++
Sbjct: 955 KVCLKDAADEFLIEYAGRQAGYENSETGTGLIGHIRLNQ 993
>Q1L5X7_SOLLC (tr|Q1L5X7) DNA-directed RNA polymerase (Fragment) OS=Solanum
lycopersicum GN=RPE1 PE=2 SV=1
Length = 1127
Score = 389 bits (999), Expect = e-106, Method: Compositional matrix adjust.
Identities = 201/339 (59%), Positives = 252/339 (74%), Gaps = 2/339 (0%)
Query: 1 MESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQDIE 60
ME++ + GFS+ L DF ++ AV+ I +S LL+ LR YNE V QLE H+++ +
Sbjct: 161 MENLCTEGFSISLRDFYMTKAVRDGIQERIQCMSKLLHHLRSSYNESVEVQLEHHLRNEK 220
Query: 61 LPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKL 120
LP I FV KSS +G +IDSKS+SA +KV QQIGFLG Q+ RG+ Y L+ D+A F+
Sbjct: 221 LPVIDFVLKSSGMGVLIDSKSESAFNKVVQQIGFLGLQISDRGKFYXXTLVHDMAQLFQK 280
Query: 121 KCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMA 180
K G PS E+GL+R C F+GLDP++ ++HSIS+RE++VRS+RGL+EPGTLF NLMA
Sbjct: 281 KYPSVGTN-PSEEFGLVRSCLFYGLDPYQGMIHSISSREVIVRSTRGLTEPGTLFXNLMA 339
Query: 181 ILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGDKTRYLFPAGEPVGVLAATSMSNPAYKAV 240
ILRDVV+CYDGTVRNV SNSIIQFEYG G F AG+PVGVLAAT+MSNPAYKA
Sbjct: 340 ILRDVVICYDGTVRNVSSNSIIQFEYGSSGGSNLPSEFCAGDPVGVLAATAMSNPAYKAX 399
Query: 241 LDASPSSSCSWELMKEILLCKVNFRNEPIDRRVILYLNDCDCGRRYCRENAAYIVKNQLR 300
LD+SPSS+ SWE+MKEILLC V+F+N+ DRRVILYLNDC C R YCRE AAY+VKN L
Sbjct: 400 LDSSPSSNSSWEMMKEILLCGVSFKNDVSDRRVILYLNDCGCRRGYCREKAAYVVKNHLS 459
Query: 301 KVSLKDTAVDFIVEYQ-QQRKREGSETDAGLVGHIHLDE 338
KV LKD A +F++EY +Q E SET GL+GHI L++
Sbjct: 460 KVCLKDAADEFLIEYAGRQAGYENSETGTGLIGHIRLNQ 498
>M4C7I4_BRARP (tr|M4C7I4) DNA-directed RNA polymerase OS=Brassica rapa subsp.
pekinensis GN=Bra000162 PE=3 SV=1
Length = 2059
Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust.
Identities = 187/344 (54%), Positives = 257/344 (74%), Gaps = 13/344 (3%)
Query: 1 MESIFSNGFSVGLHDFSIS----GAVKRVTDRNIGKVSPLLYQLRFIYNELVAQQLEKHM 56
ME + GFS+ L D S+S G + + R I SP++ +LR Y + + QLE +
Sbjct: 609 MEHLDPQGFSLSLEDLSMSREDMGVIHNLIVREI---SPMVSRLRLSYEDEL--QLENSI 663
Query: 57 QDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVAS 116
Q ++ A F+ KS + ++ID KS SA++K+ QQIGFLG QL + +LY+K L+ED+A
Sbjct: 664 QKVKEVAANFMLKSYSMRNLIDIKSNSAINKLVQQIGFLGLQLSDKKKLYTKTLVEDMAQ 723
Query: 117 HFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFK 176
+K K S ++G+++GCFFHGLDP+EE+ HS++ RE++VRSSRGL+EPGTLFK
Sbjct: 724 FYKKKYVSTSS---SGDFGIVKGCFFHGLDPYEEMAHSVAAREVIVRSSRGLAEPGTLFK 780
Query: 177 NLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGDKTRYLFPAGEPVGVLAATSMSNPA 236
NLMA+LRD+V+ DGTVRN CSNSI+QF+Y + + ++ + LF AG+PVGVLAAT+MSNPA
Sbjct: 781 NLMAVLRDIVITNDGTVRNTCSNSIVQFKYELSSDNENQGLFEAGDPVGVLAATAMSNPA 840
Query: 237 YKAVLDASPSSSCSWELMKEILLCKVNFRNEPIDRRVILYLNDCDCGRRYCRENAAYIVK 296
YKAVLD+SP+S+ SWELMKE+LLCKVNF+N DRRVILYLN+C CG++YC+EN+AY V+
Sbjct: 841 YKAVLDSSPNSNSSWELMKEVLLCKVNFQNTTNDRRVILYLNECRCGKKYCQENSAYTVR 900
Query: 297 NQLRKVSLKDTAVDFIVEYQQQRK-REGSETDAGLVGHIHLDEV 339
N+L+KVSLKDTAV+F+VEY++Q+ E D L GHIHL++
Sbjct: 901 NKLKKVSLKDTAVEFLVEYRKQQAISEIFGMDICLHGHIHLNKT 944
>D7LEE8_ARALL (tr|D7LEE8) DNA-directed RNA polymerase OS=Arabidopsis lyrata
subsp. lyrata GN=ARALYDRAFT_483042 PE=3 SV=1
Length = 1947
Score = 375 bits (964), Expect = e-102, Method: Compositional matrix adjust.
Identities = 190/341 (55%), Positives = 254/341 (74%), Gaps = 7/341 (2%)
Query: 1 MESIFSNGFSVGLHDFSISGA-VKRVTDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQDI 59
MES+F+ GFSV L D S+S A + + + I ++SP++ +LR Y + + QLE + +
Sbjct: 609 MESLFAEGFSVSLEDLSMSRADMDVIHNLIIREISPMVSRLRLSYRDEL--QLENSLHKV 666
Query: 60 ELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFK 119
+ A F+ KS + ++ID KS SA+ K+ QQ GFLG QL + + Y+K L+ED+A K
Sbjct: 667 KEVAANFMLKSYSMRNLIDIKSNSAITKLVQQTGFLGLQLSDKKKFYTKTLVEDMALFCK 726
Query: 120 LKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLM 179
K G S ++G+++GCFFHGLDP+EE+ HSI+ RE++VRSSRGL+EPGTLFKNLM
Sbjct: 727 RKY---GRISSSGDFGIVKGCFFHGLDPYEEMAHSIAAREVIVRSSRGLAEPGTLFKNLM 783
Query: 180 AILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGDKTRYLFPAGEPVGVLAATSMSNPAYKA 239
A+LRD+V+ DGTVRN CSNS++QF YGV + + LF AGEPVGVLAAT+MSNPAYKA
Sbjct: 784 AVLRDIVITNDGTVRNTCSNSVVQFTYGVDSERGHQGLFEAGEPVGVLAATAMSNPAYKA 843
Query: 240 VLDASPSSSCSWELMKEILLCKVNFRNEPIDRRVILYLNDCDCGRRYCRENAAYIVKNQL 299
VLD++ +S+ SWE MKE+LLCKVNF+N DRRVILYLN+C CG+R+C+ENAAY V+N+L
Sbjct: 844 VLDSTANSNSSWEQMKEVLLCKVNFQNTTNDRRVILYLNECHCGKRFCQENAAYTVRNKL 903
Query: 300 RKVSLKDTAVDFIVEY-QQQRKREGSETDAGLVGHIHLDEV 339
+KVSLKDTAV+F+VEY +QQ E D+ L GHIHLD+
Sbjct: 904 KKVSLKDTAVEFLVEYRKQQTISEIFGIDSCLHGHIHLDKT 944
>M0SC38_MUSAM (tr|M0SC38) DNA-directed RNA polymerase OS=Musa acuminata subsp.
malaccensis PE=3 SV=1
Length = 1433
Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust.
Identities = 187/340 (55%), Positives = 254/340 (74%), Gaps = 1/340 (0%)
Query: 1 MESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQDIE 60
ME +F GFS+ L DF +S AV +I K S +L QLR +E Q++ H++ ++
Sbjct: 402 MEMLFMEGFSICLKDFILSKAVVSEIQGSIQKNSCILNQLRSRRDERAELQVQNHLRSMK 461
Query: 61 LPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKL 120
P +KF+ SS LG++IDSKS S++ KV +Q+GFLG QLF +G+ YS+ L++D +F
Sbjct: 462 DPIVKFILNSSALGNLIDSKSDSSMVKVVEQLGFLGLQLFDQGKYYSRALVDDCFLNFVS 521
Query: 121 KCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMA 180
K +PS YGL++ FFHGL+P+E LVH+IS+RE++VRSSRGL+EPGTLFKNLMA
Sbjct: 522 KHSAGEVDHPSEAYGLVKNSFFHGLNPYEMLVHAISSREVIVRSSRGLTEPGTLFKNLMA 581
Query: 181 ILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGDKTRYLFPAGEPVGVLAATSMSNPAYKAV 240
ILRDVV+CYDG+VRNVC+ S++Q EY G + PAG+PVGVLAAT++SN AYKAV
Sbjct: 582 ILRDVVICYDGSVRNVCTGSLVQLEYVDDEGVNSVNTPPAGDPVGVLAATAISNLAYKAV 641
Query: 241 LDASPSSSCSWELMKEILLCKVNFRNEPIDRRVILYLNDCDCGRRYCRENAAYIVKNQLR 300
LD+S S++ SWELMKEILLCKV+++N+ DRRVILYLNDC C +R+C+ENAA+ V N L+
Sbjct: 642 LDSSQSNNSSWELMKEILLCKVSYKNDVSDRRVILYLNDCCCQKRFCKENAAFTVLNCLK 701
Query: 301 KVSLKDTAVDFIVEYQQQRKR-EGSETDAGLVGHIHLDEV 339
+V+LKD A +F++EYQ+Q + S T +GLVGHIHLD++
Sbjct: 702 RVTLKDCAHEFLIEYQKQIGVCDSSVTTSGLVGHIHLDKM 741
>R0FV63_9BRAS (tr|R0FV63) Uncharacterized protein OS=Capsella rubella
GN=CARUB_v10022497mg PE=4 SV=1
Length = 1959
Score = 368 bits (945), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 187/341 (54%), Positives = 253/341 (74%), Gaps = 7/341 (2%)
Query: 1 MESIFSNGFSVGLHDFSISGA-VKRVTDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQDI 59
MES+F+ GFS+ L D S+S A + + + I + SP++ +LR Y + + QLE + +
Sbjct: 609 MESLFAEGFSLSLEDLSMSRADMAVIHNLIIRETSPMVSRLRLSYEDEL--QLENSIHKV 666
Query: 60 ELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFK 119
+ A F+ KS + ++ID KS SA++K+ QQ GFLG QL + + Y+K L+ED+A K
Sbjct: 667 KEVAANFMLKSYSMRNLIDMKSNSAINKLVQQTGFLGLQLSDKKKFYTKTLVEDMALFCK 726
Query: 120 LKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLM 179
K G S ++G+++GCFFHGLDP+EE+ HSI+ RE++VRSSRGL+EPGTLFKNLM
Sbjct: 727 RKY---GRISSSGDFGIVKGCFFHGLDPYEEMAHSIAAREVIVRSSRGLAEPGTLFKNLM 783
Query: 180 AILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGDKTRYLFPAGEPVGVLAATSMSNPAYKA 239
A+LRD+V+ DGTVRN CSNS++QF+YGV + + LF AGEPVGVLAAT+MSNPAYKA
Sbjct: 784 AVLRDIVITNDGTVRNTCSNSVVQFKYGVDSERGHQGLFEAGEPVGVLAATAMSNPAYKA 843
Query: 240 VLDASPSSSCSWELMKEILLCKVNFRNEPIDRRVILYLNDCDCGRRYCRENAAYIVKNQL 299
VLD++ +S+ SWELMKE+LLCKVNF+N DRRVILYLN+C CG+R+C+ENAA V+N+L
Sbjct: 844 VLDSTANSNSSWELMKEVLLCKVNFQNNTNDRRVILYLNECRCGKRFCQENAACTVRNKL 903
Query: 300 RKVSLKDTAVDFIVEY-QQQRKREGSETDAGLVGHIHLDEV 339
KVSLK TAV+F+VEY +QQ E D+ L GHIHL++
Sbjct: 904 NKVSLKATAVEFLVEYRKQQTISEIFGIDSCLHGHIHLNKT 944
>K3YP74_SETIT (tr|K3YP74) DNA-directed RNA polymerase OS=Setaria italica
GN=Si016066m.g PE=3 SV=1
Length = 2050
Score = 347 bits (891), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 179/354 (50%), Positives = 244/354 (68%), Gaps = 17/354 (4%)
Query: 1 MESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQDIE 60
ME + +GFSV L DF++ A+ +NI K S +L Q RF +++ ++E +++ ++
Sbjct: 613 MEFLLLDGFSVTLKDFNVPKAILEEVHKNIQKQSLILEQSRFSKSQIAEMRVENNLKGVK 672
Query: 61 LPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKL 120
+FV K S LG +ID K ++++ KV QQ+GF+G QL+ G+LYS L+ED S+F
Sbjct: 673 QQISEFVIKCSDLGLLIDPKKEASMSKVVQQLGFVGLQLYHEGKLYSSRLVEDCFSNFVN 732
Query: 121 KCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMA 180
K GD +P YGL++ +FHGL+P+EELVHSISTRE +VRSSRGL+EPGTLFKNLMA
Sbjct: 733 KHSDIGDEHPPEAYGLVQSSYFHGLNPYEELVHSISTREAIVRSSRGLTEPGTLFKNLMA 792
Query: 181 ILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGDKTRY--LFPAGEPVGVLAATSMSNPAYK 238
ILRDVV+CYDGTVRN CSNSIIQ +Y K D+T + P GEPVGVLAAT++S PAY+
Sbjct: 793 ILRDVVICYDGTVRNTCSNSIIQLKY--KEDDETDFPSALPPGEPVGVLAATAISTPAYR 850
Query: 239 AVLDASPSSSCSWELMKEILLCKVNFRNEPIDRRVILYLNDCDCGRRYCRENAAYIVKNQ 298
AVLD+S S++ SWE MKEIL KV ++N+ DR+VIL+LNDC C +++C+E AA V++
Sbjct: 851 AVLDSSQSNNASWESMKEILQTKVGYKNDMKDRKVILFLNDCSCPKKFCKERAALTVQSC 910
Query: 299 LRKVSLKDTAVDFIVEYQQQRK-------------REGSETDAGLVGHIHLDEV 339
LR+V+L D A D +E ++Q+ E SE LVGHIHLD+
Sbjct: 911 LRRVTLADCATDISIEGERQKYVVCIFRHQKQINLDETSEAAPTLVGHIHLDKA 964
>I1IV91_BRADI (tr|I1IV91) DNA-directed RNA polymerase OS=Brachypodium distachyon
GN=BRADI4G45065 PE=3 SV=1
Length = 1954
Score = 345 bits (886), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 171/340 (50%), Positives = 237/340 (69%), Gaps = 1/340 (0%)
Query: 1 MESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQDIE 60
ME + +GFSV L DF++ + ++I + S +L Q R ++ V +++ +++D++
Sbjct: 611 MEYLLLDGFSVSLQDFNVPKVLLEEVHKSIQEQSLVLEQSRCSKSQFVEMRVDNNLKDVK 670
Query: 61 LPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKL 120
FV +SS LG +ID KS+ ++ KV QQ+GF+G QL+ G+ YS L+ED S F
Sbjct: 671 QQISDFVVESSHLGLLIDPKSEPSMSKVVQQLGFVGLQLYREGKFYSSRLVEDCFSSFVD 730
Query: 121 K-CDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLM 179
K G+ +P YGL++ +FHGL+P+EELVHSISTRE +VRSSRGL+EPGTLFKNLM
Sbjct: 731 KHPPIVGNQHPPEAYGLVQNSYFHGLNPYEELVHSISTREAIVRSSRGLTEPGTLFKNLM 790
Query: 180 AILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGDKTRYLFPAGEPVGVLAATSMSNPAYKA 239
AILRDVV+CYDGTVRN+CSNSI+Q +Y GEPVGVLAAT++SNPAYKA
Sbjct: 791 AILRDVVICYDGTVRNICSNSIMQLKYNEDDATDIPSALTPGEPVGVLAATAISNPAYKA 850
Query: 240 VLDASPSSSCSWELMKEILLCKVNFRNEPIDRRVILYLNDCDCGRRYCRENAAYIVKNQL 299
VLDAS S++ SW MKEIL KV+++N+ DR+VIL+LNDC C +++C+E AA V+N+L
Sbjct: 851 VLDASQSNNTSWASMKEILQTKVSYKNDTNDRKVILFLNDCSCPKKFCKEKAAIAVQNRL 910
Query: 300 RKVSLKDTAVDFIVEYQQQRKREGSETDAGLVGHIHLDEV 339
++V+L+D A D +EY +Q SE LVGHIHL++
Sbjct: 911 KRVTLEDCATDICIEYHKQILDGSSEATPALVGHIHLEKA 950
>B8AHU1_ORYSI (tr|B8AHU1) DNA-directed RNA polymerase OS=Oryza sativa subsp.
indica GN=OsI_05888 PE=3 SV=1
Length = 1867
Score = 344 bits (883), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 176/338 (52%), Positives = 232/338 (68%), Gaps = 1/338 (0%)
Query: 1 MESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQDIE 60
ME I +GFSV L DF++ + +NI K S +L Q RF N++V +++ +++DI+
Sbjct: 612 MELILLDGFSVSLQDFNVPKVLLEEAQKNIEKQSLILEQSRFAENQVVEMRVDNNLKDIK 671
Query: 61 LPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKL 120
FV K S LG +ID KS S++ KV QQ+GF+G QL+ G+ YS+ L+ED F
Sbjct: 672 QQISDFVVKRSHLGLLIDPKSDSSVSKVVQQLGFVGLQLYREGKFYSRRLVEDCYYTFVN 731
Query: 121 KCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMA 180
K + + YGL+R +FHGL+P+EELVH+ISTRE +VRSSRGL+EPGTLFKNLMA
Sbjct: 732 KHPAVREEHSPEAYGLVRSSYFHGLNPYEELVHAISTREAIVRSSRGLTEPGTLFKNLMA 791
Query: 181 ILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGDKTRYLFPAGEPVGVLAATSMSNPAYKAV 240
+LRDVV+CYDGTVRNVCS SIIQ Y GEPVGVLAAT++SNPAYKAV
Sbjct: 792 LLRDVVICYDGTVRNVCSKSIIQLNYTEDDALDFPSAIGPGEPVGVLAATAISNPAYKAV 851
Query: 241 LDASPSSSCSWELMKEILLCKVNFRNEPIDRRVILYLNDCDCGRRYCRENAAYIVKNQLR 300
LDAS S++ SWE MKEIL ++N+ DR+VIL+LNDC C +++C+E AA V+ LR
Sbjct: 852 LDASQSNNTSWERMKEILQTTSRYKNDMKDRKVILFLNDCSCAKKFCKEKAAIAVQGCLR 911
Query: 301 KVSLKDTAVDFIVEYQQQRKREG-SETDAGLVGHIHLD 337
+++L+D A D +EYQ+Q +G SE LVGHIHLD
Sbjct: 912 RITLEDCATDICIEYQKQIGLDGTSEAAPALVGHIHLD 949
>J3L9M9_ORYBR (tr|J3L9M9) DNA-directed RNA polymerase OS=Oryza brachyantha
GN=OB02G13460 PE=3 SV=1
Length = 2034
Score = 342 bits (877), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 173/338 (51%), Positives = 231/338 (68%), Gaps = 1/338 (0%)
Query: 1 MESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQDIE 60
ME I +GFSV L DF++ + +NI K S +L Q R N+ V +++ +++DI+
Sbjct: 653 MELILLDGFSVSLQDFNVPKVHLQEAQKNIEKQSIILEQSRCAENQFVEMRVDNNLKDIK 712
Query: 61 LPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKL 120
FV K S LG +ID KS ++ KV QQ+GF+G QL+ G+ YS+ L+ED S+F
Sbjct: 713 QQISDFVVKRSHLGLLIDPKSDPSVSKVVQQLGFVGLQLYREGKFYSRRLVEDCFSNFVN 772
Query: 121 KCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMA 180
K + YGL+R +FHGL+P+EELVH+ISTRE +VRSSRGL+EPGTLFKNLMA
Sbjct: 773 KHPAVRKEHSPEAYGLVRSSYFHGLNPYEELVHAISTREAIVRSSRGLTEPGTLFKNLMA 832
Query: 181 ILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGDKTRYLFPAGEPVGVLAATSMSNPAYKAV 240
+LRDVV+CYDGTVRNVCS SIIQ +Y + GEPVGVLAAT++SNPAYKAV
Sbjct: 833 LLRDVVICYDGTVRNVCSKSIIQLKYKEEDALDFPSAIAPGEPVGVLAATAISNPAYKAV 892
Query: 241 LDASPSSSCSWELMKEILLCKVNFRNEPIDRRVILYLNDCDCGRRYCRENAAYIVKNQLR 300
LDAS S++ SWE MKEIL ++N+ DR++IL+LNDC C +++C+E AA V+ LR
Sbjct: 893 LDASQSNNTSWERMKEILQTTTRYKNDTKDRKIILFLNDCSCAKKFCKEKAAIAVQGCLR 952
Query: 301 KVSLKDTAVDFIVEYQQQRKREG-SETDAGLVGHIHLD 337
+++L+D A D +EYQ+Q +G SE LVGHIH D
Sbjct: 953 RITLEDCATDICIEYQKQISLDGTSEASPALVGHIHFD 990
>M0WRB8_HORVD (tr|M0WRB8) DNA-directed RNA polymerase OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 925
Score = 337 bits (865), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 176/345 (51%), Positives = 239/345 (69%), Gaps = 11/345 (3%)
Query: 1 MESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQDIE 60
ME + +GFSV L DFS+ + I K S +L Q R ++ V +++ +++D++
Sbjct: 398 MEFLLLDGFSVSLQDFSVPKPLLEEAQECIKKQSLVLEQSRCSNSQSVEVRVDNNLKDVK 457
Query: 61 LPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHF-- 118
FV KSSRLG +ID KS ++ KV QQ+ F+G QL+ G+ YS+ L++D S F
Sbjct: 458 QQIADFVVKSSRLGLLIDPKSDPSVSKVVQQLAFVGPQLYREGKFYSRRLVDDCFSSFVN 517
Query: 119 KLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNL 178
+ DG +P YGL++ +FHGL+P+EELVHSI TRE +VRSSRGL+EPGTLFK+L
Sbjct: 518 RHPPIEDGVQHPPEAYGLVQSAYFHGLNPYEELVHSICTRETIVRSSRGLTEPGTLFKSL 577
Query: 179 MAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGDKTRYLFPA----GEPVGVLAATSMSN 234
MAILRDVV+CYDGTVRN+CSNSI+Q +Y K D T FP+ GEPVGVLAAT++SN
Sbjct: 578 MAILRDVVICYDGTVRNICSNSIMQLKY--KEEDDTD--FPSAIAPGEPVGVLAATAISN 633
Query: 235 PAYKAVLDASPSSSCSWELMKEILLCKVNFRNEPIDRRVILYLNDCDCGRRYCRENAAYI 294
PAYKAVLDAS S++ SWELMKEIL KV+++N+ DR+VIL+LNDC C +++C+E AA
Sbjct: 634 PAYKAVLDASQSNNTSWELMKEILKTKVSYKNDAKDRKVILFLNDCSCPKKFCKEKAAIA 693
Query: 295 VKNQLRKVSLKDTAVDFIVEYQQQRKREG-SETDAGLVGHIHLDE 338
V+ L++V+L+D A D +EY +Q SE VGHIHL++
Sbjct: 694 VQGCLKRVTLEDCATDICIEYHKQVSLAATSEAIPAFVGHIHLEK 738
>M8BMS2_AEGTA (tr|M8BMS2) DNA-directed RNA polymerase II subunit RPB1-B OS=Aegilops
tauschii GN=F775_02057 PE=4 SV=1
Length = 2017
Score = 337 bits (864), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 173/344 (50%), Positives = 239/344 (69%), Gaps = 7/344 (2%)
Query: 1 MESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQDIE 60
ME + +GFSV L DFS+ + I K S +L Q R ++ V +++ +++D++
Sbjct: 707 MEFLLLDGFSVSLQDFSVPKPLLEEAQECIKKQSLVLEQSRCSSSQSVETRVDNNLKDVK 766
Query: 61 LPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHF-- 118
FV KSSRLG +ID KS S++ KV QQ+ F+G QL+ G+ YS+ L++D S F
Sbjct: 767 QQIADFVVKSSRLGLLIDPKSDSSVSKVVQQLAFVGPQLYREGKFYSRRLVDDCFSSFVN 826
Query: 119 KLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNL 178
+ DG +P YGL++ +FHGL+P+EELVHSI TRE +VRSSRGL+EPGTLFK+L
Sbjct: 827 RHPPIEDGVQHPPEAYGLVQSAYFHGLNPYEELVHSICTRETIVRSSRGLTEPGTLFKSL 886
Query: 179 MAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGDKTRY--LFPAGEPVGVLAATSMSNPA 236
MAILRDVV+CYDGTVRN+CSNSI+Q +Y K D T + GEPVGVLAAT++SNPA
Sbjct: 887 MAILRDVVICYDGTVRNICSNSIMQLKY--KEEDDTDFPSAIAPGEPVGVLAATAISNPA 944
Query: 237 YKAVLDASPSSSCSWELMKEILLCKVNFRNEPIDRRVILYLNDCDCGRRYCRENAAYIVK 296
YK VLD+S S++ SWELMKEIL KV+++N+ DR+VIL+LNDC C +++C+E AA V+
Sbjct: 945 YKTVLDSSQSNNTSWELMKEILKTKVSYKNDAKDRKVILFLNDCSCPKKFCKEKAAIAVQ 1004
Query: 297 NQLRKVSLKDTAVDFIVEYQQQRKREG-SETDAGLVGHIHLDEV 339
L++V+L+D A D +EY++Q + SE VGHIHL++
Sbjct: 1005 GCLKRVTLEDCATDICIEYKKQVSLDAISEATPAFVGHIHLEKA 1048
>M0WRB9_HORVD (tr|M0WRB9) DNA-directed RNA polymerase OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 1139
Score = 336 bits (862), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 176/345 (51%), Positives = 239/345 (69%), Gaps = 11/345 (3%)
Query: 1 MESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQDIE 60
ME + +GFSV L DFS+ + I K S +L Q R ++ V +++ +++D++
Sbjct: 612 MEFLLLDGFSVSLQDFSVPKPLLEEAQECIKKQSLVLEQSRCSNSQSVEVRVDNNLKDVK 671
Query: 61 LPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHF-- 118
FV KSSRLG +ID KS ++ KV QQ+ F+G QL+ G+ YS+ L++D S F
Sbjct: 672 QQIADFVVKSSRLGLLIDPKSDPSVSKVVQQLAFVGPQLYREGKFYSRRLVDDCFSSFVN 731
Query: 119 KLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNL 178
+ DG +P YGL++ +FHGL+P+EELVHSI TRE +VRSSRGL+EPGTLFK+L
Sbjct: 732 RHPPIEDGVQHPPEAYGLVQSAYFHGLNPYEELVHSICTRETIVRSSRGLTEPGTLFKSL 791
Query: 179 MAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGDKTRYLFPA----GEPVGVLAATSMSN 234
MAILRDVV+CYDGTVRN+CSNSI+Q +Y K D T FP+ GEPVGVLAAT++SN
Sbjct: 792 MAILRDVVICYDGTVRNICSNSIMQLKY--KEEDDTD--FPSAIAPGEPVGVLAATAISN 847
Query: 235 PAYKAVLDASPSSSCSWELMKEILLCKVNFRNEPIDRRVILYLNDCDCGRRYCRENAAYI 294
PAYKAVLDAS S++ SWELMKEIL KV+++N+ DR+VIL+LNDC C +++C+E AA
Sbjct: 848 PAYKAVLDASQSNNTSWELMKEILKTKVSYKNDAKDRKVILFLNDCSCPKKFCKEKAAIA 907
Query: 295 VKNQLRKVSLKDTAVDFIVEYQQQRKREG-SETDAGLVGHIHLDE 338
V+ L++V+L+D A D +EY +Q SE VGHIHL++
Sbjct: 908 VQGCLKRVTLEDCATDICIEYHKQVSLAATSEAIPAFVGHIHLEK 952
>B9F2S6_ORYSJ (tr|B9F2S6) DNA-directed RNA polymerase OS=Oryza sativa subsp.
japonica GN=OsJ_05410 PE=2 SV=1
Length = 2017
Score = 321 bits (822), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 162/314 (51%), Positives = 216/314 (68%)
Query: 1 MESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQDIE 60
ME I +GFSV L DF++ + +NI K S +L Q RF N++V +++ +++DI+
Sbjct: 612 MELILLDGFSVSLQDFNVPKVLLEEAQKNIEKQSLILEQSRFAENQVVEMRVDNNLKDIK 671
Query: 61 LPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKL 120
FV K S LG +ID KS S++ KV QQ+GF+G QL+ G+ YS+ L+ED F
Sbjct: 672 QQISDFVVKRSHLGLLIDPKSDSSVSKVVQQLGFVGLQLYREGKFYSRRLVEDCYYTFVN 731
Query: 121 KCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMA 180
K + + YGL+R +FHGL+P+EELVH+ISTRE +VRSSRGL+EPGTLFKNLMA
Sbjct: 732 KHPAVREEHSPEAYGLVRSSYFHGLNPYEELVHAISTREAIVRSSRGLTEPGTLFKNLMA 791
Query: 181 ILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGDKTRYLFPAGEPVGVLAATSMSNPAYKAV 240
+LRDVV+CYDGTVRNVCS SIIQ Y GEPVGVLAAT++SNPAYKAV
Sbjct: 792 LLRDVVICYDGTVRNVCSKSIIQLNYTEDDALDFPSAIGPGEPVGVLAATAISNPAYKAV 851
Query: 241 LDASPSSSCSWELMKEILLCKVNFRNEPIDRRVILYLNDCDCGRRYCRENAAYIVKNQLR 300
LDAS S++ SWE MKEIL ++N+ DR+VIL+LNDC C +++C+E AA V+ LR
Sbjct: 852 LDASQSNNTSWERMKEILQTTSRYKNDMKDRKVILFLNDCSCAKKFCKEKAAIAVQGCLR 911
Query: 301 KVSLKDTAVDFIVE 314
+++L+D A D +E
Sbjct: 912 RITLEDCATDICIE 925
>I1NXC6_ORYGL (tr|I1NXC6) DNA-directed RNA polymerase OS=Oryza glaberrima PE=3
SV=1
Length = 1630
Score = 321 bits (822), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 162/314 (51%), Positives = 216/314 (68%)
Query: 1 MESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQDIE 60
ME I +GFSV L DF++ + +NI K S +L Q RF N++V +++ +++DI+
Sbjct: 612 MELILLDGFSVSLQDFNVPKVLLEEAQKNIEKQSLILEQSRFAENQVVEMRVDNNLKDIK 671
Query: 61 LPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKL 120
FV K S LG +ID KS S++ KV QQ+GF+G QL+ G+ YS+ L+ED F
Sbjct: 672 QQISDFVVKRSHLGLLIDPKSDSSVSKVVQQLGFVGLQLYREGKFYSRRLVEDCYYTFVN 731
Query: 121 KCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMA 180
K + + YGL+R +FHGL+P+EELVH+ISTRE +VRSSRGL+EPGTLFKNLMA
Sbjct: 732 KHPAVREEHSPEAYGLVRSSYFHGLNPYEELVHAISTREAIVRSSRGLTEPGTLFKNLMA 791
Query: 181 ILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGDKTRYLFPAGEPVGVLAATSMSNPAYKAV 240
+LRDVV+CYDGTVRNVCS SIIQ Y GEPVGVLAAT++SNPAYKAV
Sbjct: 792 LLRDVVICYDGTVRNVCSKSIIQLNYMEDDALDFPSAIGPGEPVGVLAATAISNPAYKAV 851
Query: 241 LDASPSSSCSWELMKEILLCKVNFRNEPIDRRVILYLNDCDCGRRYCRENAAYIVKNQLR 300
LDAS S++ SWE MKEIL ++N+ DR+VIL+LNDC C +++C+E AA V+ LR
Sbjct: 852 LDASQSNNTSWERMKEILQTTSRYKNDMKDRKVILFLNDCSCAKKFCKEKAAIAVQGCLR 911
Query: 301 KVSLKDTAVDFIVE 314
+++L+D A D +E
Sbjct: 912 RITLEDCATDICIE 925
>M8ASR8_AEGTA (tr|M8ASR8) DNA-directed RNA polymerase II subunit RPB1 OS=Aegilops
tauschii GN=F775_23122 PE=4 SV=1
Length = 817
Score = 318 bits (816), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 167/341 (48%), Positives = 231/341 (67%), Gaps = 11/341 (3%)
Query: 1 MESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQDIE 60
ME + +GFS+ L DFS+ + I + S + Q R + + ++ ++++I+
Sbjct: 442 MEFLLLDGFSLTLQDFSVPKLLLEGAQECIKEQSSVFEQSRRCFK---SHSVDYNLKNIK 498
Query: 61 LPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKL 120
FV KSSRLG ++D KS ++ KV QQ+GF+G QL+ G+LYS L+E S+F
Sbjct: 499 EKISNFVVKSSRLGLLVDPKSDPSMSKVVQQLGFVGLQLYHEGKLYSGRLVESCFSNFVN 558
Query: 121 KCDYDGDGYPSAE--YGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNL 178
+ G+G A YGL++ +FHGL+P+EELVH+ISTRE +VRSSRGL E GTLFK L
Sbjct: 559 RHPPIGEGIQHAPEAYGLVQSSYFHGLNPYEELVHAISTRETIVRSSRGLPEAGTLFKGL 618
Query: 179 MAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGDKTRYLFPAGEPVGVLAATSMSNPAYK 238
MAILRDVVVCYDGTVRN+CSNSI+Q +Y T GEPVG LAAT++SNPAYK
Sbjct: 619 MAILRDVVVCYDGTVRNICSNSIMQLKYKEDPSAIT-----PGEPVGALAATAISNPAYK 673
Query: 239 AVLDASPSSSCSWELMKEILLCKVNFRNEPIDRRVILYLNDCDCGRRYCRENAAYIVKNQ 298
+VLDAS S++ SWELMKEIL KV+++N+ +R+VIL+LNDC C +++C+E AA V+
Sbjct: 674 SVLDASQSNNTSWELMKEILQTKVSYKNDAKNRKVILFLNDCSCPKKFCKEKAAIAVQGC 733
Query: 299 LRKVSLKDTAVDFIVEYQQQRKREG-SETDAGLVGHIHLDE 338
L++V+L+D D +EYQ+Q +G SE VGHIHL++
Sbjct: 734 LKRVTLEDCTTDICIEYQKQVSLKGTSEATPAFVGHIHLEK 774
>M0XPZ5_HORVD (tr|M0XPZ5) DNA-directed RNA polymerase OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 1281
Score = 273 bits (698), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 145/339 (42%), Positives = 210/339 (61%), Gaps = 35/339 (10%)
Query: 1 MESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQDIE 60
MES+F++GFSV L DF+ + + T Q L+ + +
Sbjct: 256 MESLFTDGFSVSLRDFNFHNPIPQTTQH---------------------QTLD--LDKLR 292
Query: 61 LPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKL 120
P + V+ SS + ++D KS SA+ K+ +QIGFLG QL GRLYS L+ED S
Sbjct: 293 KPIVDLVT-SSDIRFLVDQKSDSAMTKIVEQIGFLGHQLQRNGRLYSSSLVEDCLSKSLS 351
Query: 121 KCDYDGDG-YPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLM 179
KC +G +P +G +R F++GL+P+E+L+HSIS RE +R+S+GL EPG LFKN+M
Sbjct: 352 KCGSSTNGCHPLEAHGFVRNSFWNGLNPYEDLLHSISAREKTIRASKGLVEPGDLFKNMM 411
Query: 180 AILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGDKTRYLFPAGEPVGVLAATSMSNPAYKA 239
A+LRDVV CYDG++RN C NSII+F+ + T G+PVG+LAAT+++N AYKA
Sbjct: 412 AMLRDVVACYDGSIRNSCGNSIIKFDLTNSSSSVT-----PGDPVGILAATAVTNAAYKA 466
Query: 240 VLDASPSSSCSWELMKEILLCKVNFRNEPIDRRVILYLNDCDCGRRYCRENAAYIVKNQL 299
VLD + ++ SW+ MKE+LL + + RNE D+++ILYLN C CG +C E A+ V+ L
Sbjct: 467 VLDPNQNNMTSWDSMKEVLLTRASSRNEN-DKKIILYLNKCSCGNNFCMERASLAVQACL 525
Query: 300 RKVSLKDTAVDFIVEYQQQRKREGSETDAGLVGHIHLDE 338
++ ++D A +F ++YQQQ + LVGHIHLD+
Sbjct: 526 KRTKVEDCATEFSIQYQQQ----NIQATHCLVGHIHLDK 560
>K7USA4_MAIZE (tr|K7USA4) DNA-directed RNA polymerase OS=Zea mays
GN=ZEAMMB73_731449 PE=3 SV=1
Length = 554
Score = 269 bits (687), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 133/259 (51%), Positives = 185/259 (71%)
Query: 1 MESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQDIE 60
ME + +G S+ L DF++ A+ ++I S +L Q R ++ V ++E ++++++
Sbjct: 296 MEFLLLDGLSISLRDFNVPKALLEEAQKDIRNQSLILEQSRCSTSQFVEFRVENNLKNVK 355
Query: 61 LPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKL 120
V K S LG +ID K ++++ KV QQ+GF+G QL+ G+LYS+ L+ED ++F
Sbjct: 356 QQISDSVGKFSDLGLLIDPKKEASMSKVVQQVGFVGLQLYREGKLYSRRLVEDCFTNFVN 415
Query: 121 KCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMA 180
K GD YP YGL++ +FHGL+P+EEL+H+ISTRE M+RSSRGLSEPGTLFKNLMA
Sbjct: 416 KHLAIGDEYPPEAYGLVQSSYFHGLNPYEELIHAISTREAMIRSSRGLSEPGTLFKNLMA 475
Query: 181 ILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGDKTRYLFPAGEPVGVLAATSMSNPAYKAV 240
ILRDVV+CYDGTVRN+CSNSIIQ +YG + + P GEPVGVLAAT++SNPAYKAV
Sbjct: 476 ILRDVVICYDGTVRNICSNSIIQLKYGEDDETDSSSVVPPGEPVGVLAATAISNPAYKAV 535
Query: 241 LDASPSSSCSWELMKEILL 259
LD+S S++ SWE MK ++L
Sbjct: 536 LDSSQSNNASWESMKVVML 554
>M8C0F8_AEGTA (tr|M8C0F8) DNA-directed RNA polymerase II subunit RPB1 OS=Aegilops
tauschii GN=F775_23577 PE=4 SV=1
Length = 1600
Score = 267 bits (682), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 142/339 (41%), Positives = 211/339 (62%), Gaps = 35/339 (10%)
Query: 1 MESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQDIE 60
MES+F++GFSV L DF++ + + + Q L+ + +
Sbjct: 584 MESLFTDGFSVSLRDFNVQNPIPQT---------------------IQHQTLD--LDKLR 620
Query: 61 LPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKL 120
P + F++ SS + ++D K SA+ KV +QIGFLG QL GRLYS L+ED S
Sbjct: 621 KPIVDFIT-SSDIRFLVDQKRDSAMTKVVEQIGFLGHQLQRNGRLYSGSLVEDCVSKSLS 679
Query: 121 KCDYDGDG-YPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLM 179
KC +G +P +G +R +GL+P+E+L+HSIS RE +R+S+GL EPG LFKN+M
Sbjct: 680 KCGSSTNGCHPLEAHGFVRNSLCNGLNPYEDLLHSISAREKTIRASKGLVEPGVLFKNMM 739
Query: 180 AILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGDKTRYLFPAGEPVGVLAATSMSNPAYKA 239
A+LRDVV CYDGT+RN C NS+++F+ + + + + P G+PVG+LAAT+++N AYKA
Sbjct: 740 AMLRDVVACYDGTIRNSCGNSVVKFD----SRNSSSSVTP-GDPVGILAATAVTNAAYKA 794
Query: 240 VLDASPSSSCSWELMKEILLCKVNFRNEPIDRRVILYLNDCDCGRRYCRENAAYIVKNQL 299
VLD + ++ SW+ MKE+LL + + RNE D+++ILYLN C CG +C E A+ V+ L
Sbjct: 795 VLDPNQNNMASWDSMKEVLLTRASSRNEN-DQKIILYLNKCSCGDNFCMERASLAVQACL 853
Query: 300 RKVSLKDTAVDFIVEYQQQRKREGSETDAGLVGHIHLDE 338
++ ++D A +F + YQQQ + LVGHIHLD+
Sbjct: 854 KRTKVEDCATEFSIHYQQQ----NIQATHCLVGHIHLDK 888
>C5XUR7_SORBI (tr|C5XUR7) DNA-directed RNA polymerase OS=Sorghum bicolor
GN=Sb04g003760 PE=3 SV=1
Length = 554
Score = 263 bits (671), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 133/259 (51%), Positives = 179/259 (69%)
Query: 1 MESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQDIE 60
ME + G S+ L DF++ A+ +NI S +L Q R ++ V ++E +++ ++
Sbjct: 296 MEFLVLGGLSISLRDFNVPKALLEEAQKNIQNQSLVLEQSRCSTSQFVELRVENNLKSVK 355
Query: 61 LPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKL 120
+V K S LG +ID K ++++ KV QQ+GF+G QL+ G+LYS+ L+ED S F
Sbjct: 356 QQISDYVGKFSGLGLLIDPKKEASMAKVVQQVGFVGLQLYREGKLYSRRLVEDCFSSFVN 415
Query: 121 KCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMA 180
K GD Y +GL++ +FHGL+P+EELVH+I TRE M+RSSRGLSEPGTLFKNLMA
Sbjct: 416 KHSAIGDEYSPEAFGLVQSSYFHGLNPYEELVHAICTRETMIRSSRGLSEPGTLFKNLMA 475
Query: 181 ILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGDKTRYLFPAGEPVGVLAATSMSNPAYKAV 240
ILRDVV+CYDGTVRN+CSNSIIQ +YG + P GEPVGVLAAT++SNPAYKAV
Sbjct: 476 ILRDVVICYDGTVRNICSNSIIQLKYGEDDEADSSSAVPPGEPVGVLAATAISNPAYKAV 535
Query: 241 LDASPSSSCSWELMKEILL 259
LD+S S++ SWE MK + L
Sbjct: 536 LDSSQSNNASWESMKVVKL 554
>K3Y4N1_SETIT (tr|K3Y4N1) DNA-directed RNA polymerase OS=Setaria italica
GN=Si009169m.g PE=3 SV=1
Length = 1546
Score = 246 bits (629), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 143/341 (41%), Positives = 213/341 (62%), Gaps = 35/341 (10%)
Query: 1 MESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQDIE 60
MES+ +GFS+ L DF+ A+++V Q + ++
Sbjct: 597 MESLLMDGFSMSLRDFNGPSAMQKVI-----------------------QSTSLELDELR 633
Query: 61 LPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKL 120
+ F++ S LG ++D KS SAL K+ +Q+GFLG+QL GRLYS L+ED F
Sbjct: 634 ESTVDFIAHYSALGLLVDPKSDSALRKLVEQLGFLGRQLQNNGRLYSSNLVEDCYK-FMN 692
Query: 121 KCDYDGDGY-PSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSS-RGLSEPGTLFKNL 178
KC Y P + +++ F++GL+P+EEL+HSIS RE + RSS +GL+EPG LFKN+
Sbjct: 693 KCSGSTKCYDPLKAHDVVKSSFYNGLNPYEELLHSISVREKIERSSSKGLAEPGNLFKNM 752
Query: 179 MAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGDKTRYLFPA-GEPVGVLAATSMSNPAY 237
MAILRDV+VCYDGT+R CSNSI+QF+ + D + + P G+PVG+LAAT+++N AY
Sbjct: 753 MAILRDVIVCYDGTIRTSCSNSIVQFD----STDVSSSVTPGPGDPVGILAATAVANAAY 808
Query: 238 KAVLDASPSSSCSWELMKEILLCKVNFRNEPIDRRVILYLNDCDCGRRYCRENAAYIVKN 297
KAVLD + ++ SW+LMKE+LL K + ++ ID++ ILYL+ C CG +C E AA V++
Sbjct: 809 KAVLDPNQNNMTSWDLMKEVLLTKASSISDTIDQKEILYLDKCFCGFEFCMERAALRVQS 868
Query: 298 QLRKVSLKDTAVDFIVEYQQQRKREGSETDAGLVGHIHLDE 338
L+++ ++D A + ++Y E ++ LVGHIHLD+
Sbjct: 869 CLKRIKIEDCATEVSIKYHP----EATQAAHCLVGHIHLDK 905
>C5XJ93_SORBI (tr|C5XJ93) DNA-directed RNA polymerase (Fragment) OS=Sorghum
bicolor GN=Sb03g046922 PE=3 SV=1
Length = 1571
Score = 231 bits (588), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 135/344 (39%), Positives = 206/344 (59%), Gaps = 43/344 (12%)
Query: 1 MESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQDIE 60
MES+ +GFS+ L D A+++ N+ ++ +++K + I
Sbjct: 598 MESLLMDGFSISLKDLDGQSAMQKA-------------------NQSISLEIDKFSKSI- 637
Query: 61 LPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFK- 119
+ F++ SS LG ++D K+ SAL + +Q+GFLG QL RLYS L+ED + +
Sbjct: 638 ---VDFIANSSALGLLVDPKNDSALMNLVEQVGFLGYQLQSTDRLYSNNLVEDCYNFLEK 694
Query: 120 ----LKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSS-RGLSEPGTL 174
KC YD P + + F++GL+P+EEL+HSIS RE + RSS +GL+E G L
Sbjct: 695 RSGSTKC-YD----PPKGHDFVTSSFYNGLNPYEELLHSISVREKIERSSSKGLAEAGNL 749
Query: 175 FKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGDKTRYLFPAGEPVGVLAATSMSN 234
FKN+MA+LRDV VCYDGT+R +NSI+QF+ + + + L P G+ +G+LAAT +N
Sbjct: 750 FKNMMAMLRDVTVCYDGTMRTSYNNSIVQFD----STNVSSSLTP-GDSIGILAATVFAN 804
Query: 235 PAYKAVLDASPSSSCSWELMKEILLCKVNFRNEPIDRRVILYLNDCDCGRRYCRENAAYI 294
AYKAVL + + SW+ MKE+LL + ID++ ILYLN C CG ++C E AA+
Sbjct: 805 AAYKAVLVPNQKNMTSWDSMKEVLLTNACSKTGTIDQKAILYLNKCFCGLKFCSELAAHR 864
Query: 295 VKNQLRKVSLKDTAVDFIVEYQQQRKREGSETDAGLVGHIHLDE 338
V++ L+++ L+ A++ ++YQQ E ++ LVGHIHLD+
Sbjct: 865 VQSCLKRIKLEYCAIEVSIKYQQ----EATQAAQCLVGHIHLDK 904
>Q5JJW0_ORYSJ (tr|Q5JJW0) DNA-directed RNA polymerase OS=Oryza sativa subsp.
japonica GN=P0458E05.13 PE=3 SV=1
Length = 1568
Score = 220 bits (561), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 133/339 (39%), Positives = 200/339 (58%), Gaps = 35/339 (10%)
Query: 1 MESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQDIE 60
MES+ + FS+ L DF++ + N PL +L K+ +
Sbjct: 589 MESLLIDCFSINLGDFTVPSPILEAIQNN-----PL--------------ELNKYRE--- 626
Query: 61 LPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKL 120
P + F++ SS +G ++D KS S ++KV +Q+GFLG QL GRLYS L+ED S
Sbjct: 627 -PIMDFITHSSAIGLLVDPKSDSNMNKVVEQLGFLGPQLQHNGRLYSSRLVEDCLSKSLH 685
Query: 121 KCDYDGDG-YPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLM 179
+C + P EYG +R +HGL+P+E L+HSI RE ++R+S+GL EPG+LFKN+M
Sbjct: 686 RCCGSTNCCNPLEEYGTVRSSIYHGLNPYEALLHSICEREKIMRASKGLVEPGSLFKNMM 745
Query: 180 AILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGDKTRYLFPAGEPVGVLAATSMSNPAYKA 239
+ LRDV CYDG++R N ++QF + D + + P G+PVG+LAAT+++N AYKA
Sbjct: 746 SRLRDVTACYDGSIRTSSGNLVLQF----GSRDASNCVTP-GDPVGILAATAVANAAYKA 800
Query: 240 VLDASPSSSCSWELMKEILLCKVNFRNEPIDRRVILYLNDCDCGRRYCRENAAYIVKNQL 299
VL + ++ SW+ MKE+LL + + + + R+VILYLN C C C E A ++ L
Sbjct: 801 VLAPNQNNIISWDSMKEVLLTRASTKADANHRKVILYLNQCSC-ENECMER-ALTIRACL 858
Query: 300 RKVSLKDTAVDFIVEYQQQRKREGSETDAGLVGHIHLDE 338
R++ L+D + ++YQQQ ++ LVGHIHLD+
Sbjct: 859 RRIKLEDCTTEISIKYQQQ----ATQAAHHLVGHIHLDK 893
>B9EWM0_ORYSJ (tr|B9EWM0) DNA-directed RNA polymerase OS=Oryza sativa subsp.
japonica GN=OsJ_04874 PE=3 SV=1
Length = 1528
Score = 220 bits (560), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 133/339 (39%), Positives = 200/339 (58%), Gaps = 35/339 (10%)
Query: 1 MESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQDIE 60
MES+ + FS+ L DF++ + N PL +L K+ +
Sbjct: 589 MESLLIDCFSINLGDFTVPSPILEAIQNN-----PL--------------ELNKYRE--- 626
Query: 61 LPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKL 120
P + F++ SS +G ++D KS S ++KV +Q+GFLG QL GRLYS L+ED S
Sbjct: 627 -PIMDFITHSSAIGLLVDPKSDSNMNKVVEQLGFLGPQLQHNGRLYSSRLVEDCLSKSLH 685
Query: 121 KCDYDGDG-YPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLM 179
+C + P EYG +R +HGL+P+E L+HSI RE ++R+S+GL EPG+LFKN+M
Sbjct: 686 RCCGSTNCCNPLEEYGTVRSSIYHGLNPYEALLHSICEREKIMRASKGLVEPGSLFKNMM 745
Query: 180 AILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGDKTRYLFPAGEPVGVLAATSMSNPAYKA 239
+ LRDV CYDG++R N ++QF + D + + P G+PVG+LAAT+++N AYKA
Sbjct: 746 SRLRDVTACYDGSIRTSSGNLVLQF----GSRDASNCVTP-GDPVGILAATAVANAAYKA 800
Query: 240 VLDASPSSSCSWELMKEILLCKVNFRNEPIDRRVILYLNDCDCGRRYCRENAAYIVKNQL 299
VL + ++ SW+ MKE+LL + + + + R+VILYLN C C C E A ++ L
Sbjct: 801 VLAPNQNNIISWDSMKEVLLTRASTKADANHRKVILYLNQCSC-ENECMER-ALTIRACL 858
Query: 300 RKVSLKDTAVDFIVEYQQQRKREGSETDAGLVGHIHLDE 338
R++ L+D + ++YQQQ ++ LVGHIHLD+
Sbjct: 859 RRIKLEDCTTEISIKYQQQ----ATQAAHHLVGHIHLDK 893
>J3L864_ORYBR (tr|J3L864) DNA-directed RNA polymerase OS=Oryza brachyantha
GN=OB01G54200 PE=3 SV=1
Length = 1576
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 131/344 (38%), Positives = 196/344 (56%), Gaps = 45/344 (13%)
Query: 1 MESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQDIE 60
MES+ +GFS+ L DF++ SP+L + Q +
Sbjct: 620 MESLLIDGFSISLRDFTVP--------------SPILEAI---------QNSPLELNKFR 656
Query: 61 LPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASH--- 117
P + F++ SS +G +ID S SA+ KV +Q+GFLG QL G+LYS L+ED S
Sbjct: 657 EPIVDFITHSSAIGLLIDPNSDSAMKKVVEQLGFLGPQLQHNGKLYSSRLVEDCLSKSLH 716
Query: 118 --FK-LKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTL 174
F+ ++C P +G +R +HGLDP+E L+HSI RE ++ +S+GL EPG+L
Sbjct: 717 RSFRSIRCHN-----PLEAHGTVRSSIYHGLDPYEALLHSICERETIMYASKGLVEPGSL 771
Query: 175 FKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGDKTRYLFPAGEPVGVLAATSMSN 234
FKN+MA LRDV+ CYDGT+R N ++QF + + + + P G+PVG+LAAT+++N
Sbjct: 772 FKNMMARLRDVIACYDGTIRTSSGNLVLQF----GSMNPSNCMTP-GDPVGILAATAVAN 826
Query: 235 PAYKAVLDASPSSSCSWELMKEILLCKVNFRNEPIDRRVILYLNDCDCGRRYCRENAAYI 294
AYKAVL + ++ SW+ MKE+LL + N + + R+VILYL+ C C A
Sbjct: 827 AAYKAVLAPNQNNITSWDSMKEVLLTRANSKTDTNCRKVILYLSQCSCENESMER--ALT 884
Query: 295 VKNQLRKVSLKDTAVDFIVEYQQQRKREGSETDAGLVGHIHLDE 338
V+ LR+V ++D + ++YQQQ + LVGH+HLD+
Sbjct: 885 VRTCLRRVKVEDCTTEIAIKYQQQTTQAADR----LVGHVHLDK 924
>B8A9M1_ORYSI (tr|B8A9M1) DNA-directed RNA polymerase OS=Oryza sativa subsp.
indica GN=OsI_05331 PE=3 SV=1
Length = 1465
Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 121/314 (38%), Positives = 185/314 (58%), Gaps = 31/314 (9%)
Query: 1 MESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQDIE 60
MES+ +GFS+ L DF++ + N PL +L K+ +
Sbjct: 588 MESLLIDGFSINLGDFTVPSPILEAIQNN-----PL--------------ELNKYRE--- 625
Query: 61 LPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKL 120
P + F++ SS +G ++D KS S ++KV +Q+GFLG QL GRLYS L+ED S
Sbjct: 626 -PIMDFITHSSAIGLLVDPKSDSNMNKVVEQLGFLGPQLQHNGRLYSSRLVEDCLSKSLH 684
Query: 121 KCDYDGDG-YPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLM 179
+C + P E+G +R +HGL+P+E L+HSI RE ++R+S+GL EPG+LFKN+M
Sbjct: 685 RCCGSTNCCNPLEEHGTVRSSIYHGLNPYEALLHSICEREKIMRASKGLVEPGSLFKNMM 744
Query: 180 AILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGDKTRYLFPAGEPVGVLAATSMSNPAYKA 239
+ LRDV CYDG++R N ++QF + D + + P G+PVG+LAAT+++N AYKA
Sbjct: 745 SRLRDVTACYDGSIRTSSGNLVLQF----GSRDASNCVTP-GDPVGILAATAVANAAYKA 799
Query: 240 VLDASPSSSCSWELMKEILLCKVNFRNEPIDRRVILYLNDCDCGRRYCRENAAYIVKNQL 299
VL + ++ SW+ MKE+LL + + + + R+VILYLN C C C E A ++ L
Sbjct: 800 VLAPNQNNIISWDSMKEVLLTRASTKADANHRKVILYLNQCSC-ENECMER-ALTIRACL 857
Query: 300 RKVSLKDTAVDFIV 313
R++ L+D + +
Sbjct: 858 RRIKLEDCTTEISI 871
>A5AJJ3_VITVI (tr|A5AJJ3) Putative uncharacterized protein OS=Vitis vinifera
GN=VITISV_018848 PE=4 SV=1
Length = 438
Score = 184 bits (467), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 96/158 (60%), Positives = 117/158 (74%), Gaps = 6/158 (3%)
Query: 110 LLEDVASHFKLKCDYDGDG--YPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSRG 167
+L DV + + D +G + A+ ++ F+ P+EE+VHSISTREI+VRSSRG
Sbjct: 274 VLLDVYKEIEEEMDKEGKANCFHYAKEAIMPMYFY----PYEEMVHSISTREIIVRSSRG 329
Query: 168 LSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGDKTRYLFPAGEPVGVL 227
LSEP TL KNLMAILRDVV+CYDGTVRNVCSNSIIQFEYGVK + FPAGE VGVL
Sbjct: 330 LSEPRTLSKNLMAILRDVVICYDGTVRNVCSNSIIQFEYGVKTRINPQRFFPAGELVGVL 389
Query: 228 AATSMSNPAYKAVLDASPSSSCSWELMKEILLCKVNFR 265
AAT+MSNPAYKAVLD+SPS++ SWEL+++ K R
Sbjct: 390 AATAMSNPAYKAVLDSSPSNNSSWELIRKSCSVKSTLR 427
>M0XPZ2_HORVD (tr|M0XPZ2) DNA-directed RNA polymerase OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 511
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 100/235 (42%), Positives = 142/235 (60%), Gaps = 30/235 (12%)
Query: 1 MESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQDIE 60
MES+F++GFSV L DF+ + + T + L +L K
Sbjct: 256 MESLFTDGFSVSLRDFNFHNPIPQTTQ----------------HQTLDLDKLRK------ 293
Query: 61 LPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKL 120
P + V+ SS + ++D KS SA+ K+ +QIGFLG QL GRLYS L+ED S
Sbjct: 294 -PIVDLVT-SSDIRFLVDQKSDSAMTKIVEQIGFLGHQLQRNGRLYSSSLVEDCLSKSLS 351
Query: 121 KCDYDGDG-YPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLM 179
KC +G +P +G +R F++GL+P+E+L+HSIS RE +R+S+GL EPG LFKN+M
Sbjct: 352 KCGSSTNGCHPLEAHGFVRNSFWNGLNPYEDLLHSISAREKTIRASKGLVEPGDLFKNMM 411
Query: 180 AILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGDKTRYLFPAGEPVGVLAATSMSN 234
A+LRDVV CYDG++RN C NSII+F+ + T G+PVG+LAAT+++N
Sbjct: 412 AMLRDVVACYDGSIRNSCGNSIIKFDLTNSSSSVT-----PGDPVGILAATAVTN 461
>M0XQ01_HORVD (tr|M0XQ01) Uncharacterized protein OS=Hordeum vulgare var.
distichum PE=4 SV=1
Length = 171
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 88/176 (50%), Positives = 122/176 (69%), Gaps = 6/176 (3%)
Query: 85 LDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDG-YPSAEYGLLRGCFFH 143
+ K+ +QIGFLG QL GRLYS L+ED S KC +G +P +G +R F++
Sbjct: 1 MTKIVEQIGFLGHQLQRNGRLYSSSLVEDCLSKSLSKCGSSTNGCHPLEAHGFVRNSFWN 60
Query: 144 GLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQ 203
GL+P+E+L+HSIS RE +R+S+GL EPG LFKN+MA+LRDVV CYDG++RN C NSII+
Sbjct: 61 GLNPYEDLLHSISAREKTIRASKGLVEPGDLFKNMMAMLRDVVACYDGSIRNSCGNSIIK 120
Query: 204 FEYGVKAGDKTRYLFPAGEPVGVLAATSMSNPAYKAVLDASPSSSCSWELMKEILL 259
F+ + T G+PVG+LAAT+++N AYKAVLD + ++ SW+ MK L+
Sbjct: 121 FDLTNSSSSVT-----PGDPVGILAATAVTNAAYKAVLDPNQNNMTSWDSMKVRLI 171
>Q1L5Y1_9MONI (tr|Q1L5Y1) DNA-directed RNA polymerase (Fragment) OS=Ceratopteris
thalictroides GN=RPD1 PE=2 SV=1
Length = 836
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 110/357 (30%), Positives = 175/357 (49%), Gaps = 64/357 (17%)
Query: 1 MESIFSNGFSVGLHD------FSISGAVKRVTDRNIG--------KVSPLLYQ------- 39
+E I GF+VGL+D ++ +K+ NIG K+ L Q
Sbjct: 163 VEWISRKGFTVGLYDVYATADWTTRDKLKKAIQVNIGEEEKQVRRKLQDLSLQSDISLGE 222
Query: 40 --------------LRFIYNELVAQQLEKHMQD----IELPAIKFVSKSSRLGDMIDSKS 81
+ +Y+ + + K+MQ IE ++K + + + +M+ S
Sbjct: 223 MKLSMGLSVESNAIIPSMYSRMAEKIALKYMQKLCSHIESDSVKNANADNSMLEMVRCGS 282
Query: 82 KSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCD--------YDGDGYPSAE 133
K ++ K ++Q FLG Q + KG + +L C YD DG+ E
Sbjct: 283 KGSIKKFSEQFAFLGLQPY-------KGKFMHPTKNMQLSCMHQDEQNVMYDQDGFLWGE 335
Query: 134 YGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTV 193
G+++ F GL P E VH++S RE M+ + +SEPG L+KN++ RDV + YDGTV
Sbjct: 336 RGIVKSSFAEGLSPQEFFVHTVSYRETMIHKALRVSEPGYLYKNMVLFARDVCMHYDGTV 395
Query: 194 RNVCSNSIIQFEYGVKAGDKTRYLFPAGEPVGVLAATSMSNPAYKAVLDASPS-----SS 248
R+ IIQF+YG K + P GEPVG LAAT++S PAY+ +L+ SP+ +
Sbjct: 396 RSEHGKHIIQFDYGCKESNMPGST-PPGEPVGFLAATAISQPAYQMLLE-SPNQLNDLAF 453
Query: 249 CSWELMKEILLCKVNFRNEPIDRRVILYLNDCDCGRRYCRENAAYIVKNQLRKVSLK 305
C EL++E + + ++P D RV+LY+ + D + +E AA V L+ V+L+
Sbjct: 454 CPLELLQETIYSRKASVSKPNDLRVVLYIKEVD---GFSKEAAAMEVSQSLQHVTLE 507
>Q1L5X8_9BRYO (tr|Q1L5X8) DNA-directed RNA polymerase (Fragment) OS=Sphagnum sp.
JL-2005 GN=RPD1 PE=2 SV=1
Length = 969
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 122/403 (30%), Positives = 187/403 (46%), Gaps = 84/403 (20%)
Query: 6 SNGFSVGLHDFSISGAVK---------------RVTDRNIG--KVSPLLYQLR------- 41
SNGFS GL DF ++ K R +++I ++ +QL
Sbjct: 174 SNGFSTGLTDFLVTSNAKERRSMLQRVSVDCLQRAKEQSINTLQICDAKFQLSHLSVDLE 233
Query: 42 ----FIYNELVAQQLEKHMQDIELPAIK-FVSKSSRLGDMIDSKS--------------- 81
F E+ L +Q +E AIK F + + +G+++ S
Sbjct: 234 VDGAFDRLEVNPASLSNKVQMLESIAIKAFRASMAGMGNIVQESSVSQNSLFSMVKAGST 293
Query: 82 KSALDKVTQQIGFLGQQLFVRGRL--YSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRG 139
K+++ K+ QI +G QL+ + +S L +L+ ++ ++GL++
Sbjct: 294 KASMSKLLDQIACMGLQLYKGEHMLPFSHVLNNSAPLESQLQEWWE-------DHGLVQN 346
Query: 140 CFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSN 199
GL F+ H I+ R ++R + +PGTLFK LM LRD+ V YDGTVR+ C
Sbjct: 347 SLVDGLTAFQLFNHVIANRTSILRKHVEVVQPGTLFKVLMLFLRDLHVGYDGTVRSQCGQ 406
Query: 200 SIIQFEYGVKAGDKTRYL--------------FPAGEPVGVLAATSMSNPAYKAVLDASP 245
++QF YG G + R+ + AGEPVGVLAAT++S PAY+++LDA
Sbjct: 407 KVVQFCYG---GARARHRRSRKEDPDLRWKVSYLAGEPVGVLAATALSQPAYESMLDAPH 463
Query: 246 SSSCSW-----ELMKEILLCKVNFRNEPIDRRVILYLNDCDCGRRYCRENAAYIVKNQLR 300
S W EL++E L + + +DRR IL L CDC + C E V+NQLR
Sbjct: 464 HS--GWKIRPLELVQETLYPREKGDPKAVDRRAILRLTHCDCSKSSCLERRVLRVQNQLR 521
Query: 301 KVSLKDTAVDFIVEYQQ-QRKREGSETDAGL------VGHIHL 336
++ LK A I+EY +R+ A L +GHIH+
Sbjct: 522 RIILKTLAQTSIIEYWDATNERKAGVNGAALRLGSPWLGHIHI 564
>A9SIR4_PHYPA (tr|A9SIR4) DNA-directed RNA polymerase OS=Physcomitrella patens
subsp. patens GN=NRPDA1502 PE=3 SV=1
Length = 1795
Score = 136 bits (343), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 105/334 (31%), Positives = 158/334 (47%), Gaps = 39/334 (11%)
Query: 36 LLYQLRFIYNELVAQQL-EKHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGF 94
L +RF+ E VA+++ +K + K+ + + L M++S SK +++K+ QQI
Sbjct: 932 LTKNIRFL--EQVAREIFQKRRSEAGRIVAKYAEQRNSLLMMVESGSKGSMEKLLQQIAG 989
Query: 95 LGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHS 154
+G QL+ L S A + + D+ D GL+R GL E H
Sbjct: 990 MGLQLYKGQHLLSYSSSRRPAMTYSSQLDWWED------MGLVRSSLVDGLKANELFRHV 1043
Query: 155 ISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAG--- 211
I+ R ++R + +PGTLFK LM LRD+ + YDG+VR+ CS ++IQF YG G
Sbjct: 1044 IADRTGILRKHVEVVQPGTLFKALMFFLRDLHIMYDGSVRSQCSKNLIQFCYGGARGSLI 1103
Query: 212 --------------DKTRYLFP--AGEPVGVLAATSMSNPAYKAVLDAS----PSSSCSW 251
D R+ AGEPVGVLAA ++S PAY+ +LDA P
Sbjct: 1104 PRKPTEETLAWEEDDHRRWPLSVLAGEPVGVLAAAAISQPAYELMLDAPSLNGPFKPRPL 1163
Query: 252 ELMKEILLCKVNFRNEPIDRRVILYLNDCDCGRRYCRENAAYIVKNQLRKVSLKDTAVDF 311
L++E L + +P DR V+L L C+C C E V+ L++++L+ A
Sbjct: 1164 NLIQETLYPREKSSLKPTDRCVVLRLVHCECTESLCLERRVLEVQAHLKRINLRMMAESV 1223
Query: 312 IVEYQQQRKREGSETDAGLV-------GHIHLDE 338
VEY + LV GHI+L +
Sbjct: 1224 AVEYWNMEDSRAAGPSGDLVRLGSPWLGHINLSQ 1257
>M0XQ02_HORVD (tr|M0XQ02) DNA-directed RNA polymerase OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 417
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 77/186 (41%), Positives = 109/186 (58%), Gaps = 25/186 (13%)
Query: 1 MESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQDIE 60
MES+F++GFSV L DF+ + + T + L +L K
Sbjct: 256 MESLFTDGFSVSLRDFNFHNPIPQTTQ----------------HQTLDLDKLRK------ 293
Query: 61 LPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKL 120
P + V+ SS + ++D KS SA+ K+ +QIGFLG QL GRLYS L+ED S
Sbjct: 294 -PIVDLVT-SSDIRFLVDQKSDSAMTKIVEQIGFLGHQLQRNGRLYSSSLVEDCLSKSLS 351
Query: 121 KCDYDGDG-YPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLM 179
KC +G +P +G +R F++GL+P+E+L+HSIS RE +R+S+GL EPG LFKN+M
Sbjct: 352 KCGSSTNGCHPLEAHGFVRNSFWNGLNPYEDLLHSISAREKTIRASKGLVEPGDLFKNMM 411
Query: 180 AILRDV 185
A+LRDV
Sbjct: 412 AMLRDV 417
>A9SIX8_PHYPA (tr|A9SIX8) DNA-directed RNA polymerase OS=Physcomitrella patens
subsp. patens GN=NRPDA1501 PE=3 SV=1
Length = 2458
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 110/349 (31%), Positives = 159/349 (45%), Gaps = 64/349 (18%)
Query: 46 ELVAQQLEKHMQ-DIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGR 104
E AQQ ++ + ++E +K+ ++ + L M+ S SK + K+ QQI +G QL+
Sbjct: 1091 EQAAQQTFRNRESEVESIVMKYAARDNGLLMMVRSGSKGSRGKLLQQIAGMGLQLYKGQH 1150
Query: 105 LYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRS 164
L + + D+ D GL+R GL+P E H I+ R +++R
Sbjct: 1151 LLPFSGSRRSSMSNSSELDWWED------KGLVRSSLVDGLNPSELFNHVIADRTVILRK 1204
Query: 165 SRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGDKTRYL------- 217
+ +PGTLFK+LM LRD+ V YDG+VRN C +I+QF YG G R +
Sbjct: 1205 HVEVVQPGTLFKSLMLFLRDLHVMYDGSVRNQCGKNIVQFCYGGAIGVLKRSIPKERLSR 1264
Query: 218 ----------------------FP----AGEPVGVLAATSMSNPAYKAVLDAS----PSS 247
+P AGEPVGVLAAT++S PAY+ +LDA P
Sbjct: 1265 SQFEVVNPATPIVTWEEDDLKRWPLSILAGEPVGVLAATAISQPAYELMLDAPCLNGPFK 1324
Query: 248 SCSWELMK--EILLCKVNFRNE-----------PIDRRVILYLNDCDCGRRYCRENAAYI 294
EL++ + LL N E PIDR I+ L +C C + C E
Sbjct: 1325 PRPLELVQPFKALLTFSNLAQETLYPRAKSVLKPIDRTAIIRLVNCPCTQPLCLERRVLA 1384
Query: 295 VKNQLRKVSLKDTAVDFIVEYQQQRKRE--GSETDA-----GLVGHIHL 336
V+ L+K+SLK A VE+ E G +A +GHI L
Sbjct: 1385 VQAHLKKISLKAIAESCAVEFWNMENFEVAGPSGEALRMGSPWLGHIKL 1433
>Q1L5X9_MARPO (tr|Q1L5X9) DNA-directed RNA polymerase (Fragment) OS=Marchantia
polymorpha GN=RPD1 PE=2 SV=1
Length = 1008
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 98/304 (32%), Positives = 151/304 (49%), Gaps = 30/304 (9%)
Query: 64 IKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYS---KGLLEDVASHFKL 120
I+ +S S+ L M+ S SK + KV QQIG LG Q+ L S L +A+
Sbjct: 265 IESISDSNCLLTMVRSGSKGSNLKVMQQIGSLGFQVIKGEELLSTHKNPKLVRLAASMGY 324
Query: 121 KCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMA 180
+ D GL++ GL+P E VH+IS R+ + R S ++EPG LFK LM
Sbjct: 325 SMENDLQDIWEIR-GLVKSSLLDGLEPHEFFVHAISVRDGLFRQSLDIAEPGELFKRLML 383
Query: 181 ILRDVVVCYDGTVRNVCSNSIIQFEY-GVKAGDK---------TRYLFPAGEPVGVLAAT 230
LRD+ + YDGTVRN+ IIQFEY G K + + + P G+ VG+LAAT
Sbjct: 384 FLRDIHIAYDGTVRNMGGLEIIQFEYDGGKCMTQDSENKNTLSNKTVMP-GDAVGILAAT 442
Query: 231 SMSNPAYKAVLDASPSSSC----SWELMKEILLCKVNFRNEPIDRRVILYLNDCDCGRRY 286
++S PAY+ +L+A+ + EL++E L + + + DR IL L+ C +Y
Sbjct: 443 AISQPAYQVMLEATQCLASRKIRPLELLQESLFPRSTSKLKESDRVSILRLHRCKSDGKY 502
Query: 287 CRENAAYIVKNQLRKVSLKDTAVDFIVEYQQQRKREGSETDAG-----------LVGHIH 335
C E ++++L+ V+++ A + + Y + D VGH+
Sbjct: 503 CEERRVLKLQDELQPVTMEILATETAIAYSSDSSEQWEGLDCAATELKQTEFFPWVGHVQ 562
Query: 336 LDEV 339
LD++
Sbjct: 563 LDKM 566
>A9TDE5_PHYPA (tr|A9TDE5) Predicted protein OS=Physcomitrella patens subsp.
patens GN=PHYPADRAFT_91237 PE=4 SV=1
Length = 805
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 112/230 (48%), Gaps = 24/230 (10%)
Query: 131 SAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYD 190
S L++ GL E H ++ R +R +++PGTLFK+LM LRD+ V YD
Sbjct: 281 SKNRSLVQSSLLDGLKATELFNHVVADRTNNIRKHITVTQPGTLFKSLMLFLRDLQVAYD 340
Query: 191 GTVRNVCSNSIIQFEYGVKAG-----------DKTRYLFP--AGEPVGVLAATSMSNPAY 237
G++R+ +I QF YG G D+ R+ F AGEPV VLAAT+ S PAY
Sbjct: 341 GSLRSRSGKNITQFCYGEAEGVRGPSGVWEEDDQKRWRFSRLAGEPVEVLAATAFSQPAY 400
Query: 238 KAVLDA----SPSSSCSWELMKEILLCKVNFRNEPIDRRVILYLNDCDCGRRYCRENAAY 293
+LDA P + +L++E L + + IDR I+ L C C R +C E +
Sbjct: 401 GVMLDAPIISGPFNPGPLDLLQETLYAREKTGLKQIDRCGIIILEQCRCTRPFCLEKSVL 460
Query: 294 IVKNQLRKVSLKDTAVDFIVEYQQQRKR-------EGSETDAGLVGHIHL 336
+V L K++L++ A ++ + E+ + +GHI L
Sbjct: 461 VVHAFLTKITLRELAESSAIQSWNMEDTTLAGPCGDALESASPWLGHIKL 510
>D8RN79_SELML (tr|D8RN79) DNA-directed RNA polymerase OS=Selaginella moellendorffii
GN=SELMODRAFT_413061 PE=3 SV=1
Length = 1444
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 109/383 (28%), Positives = 171/383 (44%), Gaps = 72/383 (18%)
Query: 1 MESIFSNGFSVGLHDFSISGAVKRVTDRNI----------GKVSPLLYQL----RF---- 42
++ I GFSVGL DF + A V+ R + K+S L +Q+ RF
Sbjct: 650 VDWISERGFSVGLCDFYM--AADAVSRRKLEEETLCAVEEAKISSLAHQIVSDSRFQVNS 707
Query: 43 -------IYNELV---------AQQ-----LEKHMQDIELPAIKFVSKSSR---LGDMID 78
+NE V QQ + M+ E + V ++SR L M++
Sbjct: 708 VSRPRCSSWNERVQPVTSANEATQQAAISAFQSTMKAFERTIEEHVRENSRENSLLRMVE 767
Query: 79 SKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAE----- 133
+KSK +L K+ QQ G LG QL +Y + V S F + + GY ++
Sbjct: 768 AKSKGSLSKMMQQGGCLGLQLRQGEFVYHR-----VKSLFPRAVENESRGYLTSSELWKS 822
Query: 134 YGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTV 193
GL+ F GLDP E +HS+S+R+ S + + + F+ LM+ ++D+ V YD T+
Sbjct: 823 MGLVESSFLDGLDPREFFIHSLSSRKGNDGSQQRCA---SFFRFLMSYMKDIRVEYDNTI 879
Query: 194 RNVCSNSIIQFEYGVKAGDKTRYLFPAGEPVGVLAATSMSNPAYKAVLDASPSSSCSWEL 253
R+ I QF YG A GEPVG+LA T++ P Y V+ +SP +S +
Sbjct: 880 RSTHGGHIFQFSYGATA--------EPGEPVGLLAGTAVIEPVYDQVMSSSPQASTMLKT 931
Query: 254 MKEILLCKVNFRNEPIDRRVILYLNDCDCGRRYCRENAAYIVKNQLRKVSLKDTAVDFIV 313
++ IL +F++ IDR V L L + A V++ L+ V++ A +
Sbjct: 932 LQNILFSN-SFKD--IDRCVTLKLQKLPVQPEWI----ALQVQDFLKPVTIGMLASKIWI 984
Query: 314 EYQQQRKREGSETDAGLVGHIHL 336
EY + G + +G L
Sbjct: 985 EYSPCSEVGGQKKRVPWIGCFEL 1007
>D8RLP4_SELML (tr|D8RLP4) DNA-directed RNA polymerase OS=Selaginella moellendorffii
GN=SELMODRAFT_441655 PE=3 SV=1
Length = 1438
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 107/383 (27%), Positives = 169/383 (44%), Gaps = 72/383 (18%)
Query: 1 MESIFSNGFSVGLHDFSISGAVKRVTDRNI----------GKVSPLLYQL----RF---- 42
++ I GFSVGL DF + A V+ R + K+S L +Q+ RF
Sbjct: 647 VDWISERGFSVGLCDFYM--AADAVSRRKLEEETLCAVEEAKISSLAHQIVSDPRFQVNS 704
Query: 43 -------IYNELV---------AQQ-----LEKHMQDIELPAIKFVSKSSR---LGDMID 78
+NE V QQ + M+ E + V ++SR L M++
Sbjct: 705 VSRPRCNSWNERVQPVTSVNEATQQAAISAFQSTMKAFERTIEEHVRENSRENSLLRMVE 764
Query: 79 SKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAE----- 133
+ SK + K+ QQ G LG QL +Y + V S F + + GY ++
Sbjct: 765 ANSKGSFSKMMQQGGCLGLQLRQGEFVYHR-----VKSLFPRAVENESRGYLTSSELWKS 819
Query: 134 YGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTV 193
GL+ F GLDP E +HS+S+R+ S + + + F+ LM+ ++D+ V YD T+
Sbjct: 820 MGLVESSFLDGLDPREFFIHSLSSRKGNDGSQQRCA---SFFRFLMSYMKDIRVEYDNTI 876
Query: 194 RNVCSNSIIQFEYGVKAGDKTRYLFPAGEPVGVLAATSMSNPAYKAVLDASPSSSCSWEL 253
R+ I QF YG A GEPVG+LA T++ P Y V+ +SP +S +
Sbjct: 877 RSTHGGHIFQFSYGATA--------EPGEPVGLLAGTAVIEPVYDQVMSSSPQASTMLKT 928
Query: 254 MKEILLCKVNFRNEPIDRRVILYLNDCDCGRRYCRENAAYIVKNQLRKVSLKDTAVDFIV 313
++ IL +F++ IDR V L L + A V++ L+ V++ A +
Sbjct: 929 LQNILFSN-SFKD--IDRCVTLKLQKLPVQPEWI----ALQVQDFLKPVTIGMLASKIWI 981
Query: 314 EYQQQRKREGSETDAGLVGHIHL 336
EY + G + +G L
Sbjct: 982 EYSPCSEVGGQKKRVPWIGCFQL 1004
>B9FC30_ORYSJ (tr|B9FC30) DNA-directed RNA polymerase OS=Oryza sativa subsp.
japonica GN=OsJ_15844 PE=3 SV=1
Length = 1623
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 92/288 (31%), Positives = 132/288 (45%), Gaps = 24/288 (8%)
Query: 65 KFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRG---RLYSKGLLEDVASHFKLK 121
++VSK + + MI+S SK ++ K QQ +G QL R+ S+ H L
Sbjct: 699 QYVSKDNSMMTMINSGSKGSVLKFVQQTACVGLQLPASKFPFRIPSQLSCVSWNRHKSLN 758
Query: 122 CDYDGDGYPSA-----EYGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFK 176
C+ DG Y ++R F GL+P E L+H+IS R S PGTL +
Sbjct: 759 CEIT-DGTSECVGGQDMYAVVRNSFLDGLNPLECLLHAISGRANFF--SENADVPGTLTR 815
Query: 177 NLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGDKTRYLFPA--GEPVGVLAATSMSN 234
LM LRD V YDGTVR+ I++F Y G + + G PVG AA S+S
Sbjct: 816 KLMYHLRDTYVAYDGTVRSSYGQQIVRFSYDTADGMYSDHDLEGEPGAPVGSWAACSISE 875
Query: 235 PAYKAVLDASPSSSCSWELM--KEILLCKVNFRNEPIDRRVILYLNDCDCGRRYCRENAA 292
AY A LD +S LM +E+L C +D +L+L+ RY E A+
Sbjct: 876 AAYGA-LDHPVNSLEDSPLMNLQEVLKCHKG--TNSLDHTGLLFLSKHLRKYRYGFEYAS 932
Query: 293 YIVKNQLRKVSLKDTAVDFIVEY--QQQRKREGSETDAGLVGHIHLDE 338
VK+ L +V D I+ Y +K +G+ + H HL++
Sbjct: 933 LEVKDHLERVDFSDMVDTVIILYGGSDMQKTKGNP----WITHFHLNQ 976
>B8AT49_ORYSI (tr|B8AT49) DNA-directed RNA polymerase OS=Oryza sativa subsp.
indica GN=OsI_17044 PE=3 SV=1
Length = 1598
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 92/288 (31%), Positives = 131/288 (45%), Gaps = 24/288 (8%)
Query: 65 KFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRG---RLYSKGLLEDVASHFKLK 121
++VSK + + MI+S SK ++ K QQ +G QL R+ S+ H L
Sbjct: 678 QYVSKDNSMMTMINSGSKGSVLKFVQQTACVGLQLPASKFPFRIPSQLSCVSWNRHKSLN 737
Query: 122 CDYDGDGYPSA-----EYGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFK 176
C+ DG Y ++R F GL+P E L+H+IS R S PGTL +
Sbjct: 738 CEIT-DGTSECVGGQDMYAVIRNSFLDGLNPLECLLHAISGRANFF--SENADVPGTLTR 794
Query: 177 NLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGDKTRYLFPA--GEPVGVLAATSMSN 234
LM LRD V YDGTVR+ I++F Y G + + G PVG AA S+S
Sbjct: 795 KLMYHLRDTYVAYDGTVRSSYGQQIVRFSYDTADGMYSDHDLEGEPGAPVGSWAACSISE 854
Query: 235 PAYKAVLDASPSSSCSWELM--KEILLCKVNFRNEPIDRRVILYLNDCDCGRRYCRENAA 292
AY A LD +S LM +E+L C +D +L+L+ RY E A+
Sbjct: 855 AAYGA-LDHPVNSLEDSPLMNLQEVLKCHKG--TNSLDHTGLLFLSKHLRKYRYGFEYAS 911
Query: 293 YIVKNQLRKVSLKDTAVDFIVEY--QQQRKREGSETDAGLVGHIHLDE 338
VK+ L +V D I+ Y +K +G+ + H HL +
Sbjct: 912 LEVKDHLERVDFSDMVDTVIILYGGSDMQKTKGNP----WITHFHLSQ 955
>M0TPQ4_MUSAM (tr|M0TPQ4) DNA-directed RNA polymerase OS=Musa acuminata subsp.
malaccensis PE=3 SV=1
Length = 1674
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 79/271 (29%), Positives = 122/271 (45%), Gaps = 24/271 (8%)
Query: 65 KFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKC-- 122
+F++K + + +MID+ SK +L K+ QQ LG QLF ++ + LK
Sbjct: 581 QFINKDNSMLEMIDAGSKGSLVKLIQQGACLGLQLFAHPLPFTVPSKLNCCMWNNLKALD 640
Query: 123 ----DYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNL 178
D + Y ++ F GL+P E VH+I R + + L PGTL + L
Sbjct: 641 GGISDAAKSSCGQSSYAVIGTSFLDGLNPLECFVHAICGRANLFTENAEL--PGTLTRKL 698
Query: 179 MAILRDVVVCYDGTVRNVCSNSIIQFEYGVKA-------------GDKTRYLFPAGEPVG 225
M +RD+ + YDGTVR+ I++F Y + G Y GEPVG
Sbjct: 699 MFYMRDLYLAYDGTVRSAYGQQIVEFSYSILEDSTEGGESCVAYDGKDAEYTGLGGEPVG 758
Query: 226 VLAATSMSNPAYKAVLDASPSSSCSWE-LMKEILLCKVNFRNEPIDRRVILYLNDCDCGR 284
AA S+S AY ++ P +S + LMK ++ N + +L+L+ G
Sbjct: 759 SWAACSISEAAYGSL--EFPMNSLEYSPLMKLKMVLDCCKSNASTNHTALLFLSKRLHGW 816
Query: 285 RYCRENAAYIVKNQLRKVSLKDTAVDFIVEY 315
RY E A VKN L +V + + ++ Y
Sbjct: 817 RYGCEYGALEVKNHLERVCFFNLIITVMILY 847
>J3M0K5_ORYBR (tr|J3M0K5) DNA-directed RNA polymerase OS=Oryza brachyantha
GN=OB04G29300 PE=3 SV=1
Length = 1474
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 88/289 (30%), Positives = 131/289 (45%), Gaps = 30/289 (10%)
Query: 67 VSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYS-KGLLEDVASHFKLKCDYD 125
VSK + + MI+S SK ++ K QQ +G QL + +L V+ + DY+
Sbjct: 748 VSKDNSMMAMINSGSKGSIPKFVQQTACVGLQLPASKFPFKIPSILSCVSWNRHKSLDYE 807
Query: 126 GDGYP------SAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLM 179
Y + Y ++R F GL+P E L+H+IS R S PGTL + LM
Sbjct: 808 ITDYTIESMGGQSMYAVIRNSFLDGLNPLECLLHAISGRANFF--SENADVPGTLTRKLM 865
Query: 180 AILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGDKTRYLFPA--GEPVGVLAATSMSNPAY 237
LRD + YDGTVR+ I+QF Y G + G PVG AA S+S AY
Sbjct: 866 YHLRDTYIAYDGTVRSSYGQQIVQFSYDTSDGMYIEHDIEGEPGTPVGSWAACSISEAAY 925
Query: 238 KAV------LDASPSSSCSWELMKEILLCKVNFRNEPIDRRVILYLNDCDCGRRYCRENA 291
A+ L+ SP + ++E+L C +D +L+L+ RY E A
Sbjct: 926 GALDHPVNGLEDSPLMN-----LQEVLKCHKG--TNSVDHTGLLFLSKHLRKYRYGFEYA 978
Query: 292 AYIVKNQLRKVSLKDTAVDFIVEY--QQQRKREGSETDAGLVGHIHLDE 338
+ VK+ L +V D ++ Y +K +G+ V H HL++
Sbjct: 979 SLEVKDHLERVDFSDLVDTVMILYGGSDIQKSKGNP----WVTHFHLNQ 1023
>B9RC12_RICCO (tr|B9RC12) DNA-directed RNA polymerase OS=Ricinus communis
GN=RCOM_1683300 PE=3 SV=1
Length = 1475
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 95/305 (31%), Positives = 140/305 (45%), Gaps = 37/305 (12%)
Query: 54 KHM-QDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLE 112
KH+ +DI+ K+ SK + L M S SK L KV Q LG Q + + L
Sbjct: 710 KHVFRDIQTLGYKYASKDNALMAMFKSGSKGNLLKVVQHSMCLGLQHSLVPLSFRMPLQL 769
Query: 113 DVASHFKLKCDYDGDG----YPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGL 168
+ K K + + PSA ++ GCF GL+P E VHS+++RE + L
Sbjct: 770 SCDAWNKQKAENAVECARSYIPSA---VVEGCFLTGLNPLECFVHSVTSRESSFSDNADL 826
Query: 169 SEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGDKTR----------YLF 218
PGTL + LM +RDV YDG+VR+ N +IQF Y + G Y
Sbjct: 827 --PGTLTRRLMFFMRDVHAAYDGSVRSAYGNQLIQFSYNIDEGRSAETYGTAKIVDNYDG 884
Query: 219 PAGEPVGVLAATSMSNPAYKA------VLDASPSSSCSWELMKEILLCKVNFRNEPIDRR 272
AG+PVG LAA S+S AY A +L+ SP + +K +L C + N +
Sbjct: 885 MAGKPVGSLAACSISEAAYSALDQPISLLEKSPLLN-----LKNVLECGLKKSNA--HKS 937
Query: 273 VILYLNDCDCGRRYCRENAAYIVKNQLRKVSLKD-TAVDFIVEYQQQRKREGSETDAGLV 331
+ L+L++ RR+ E A V++ L ++ D +V I+ Q E + V
Sbjct: 938 MSLFLSEKLGRRRHGFEYGALKVQDHLERLLFSDIVSVSRIIFSSQS---ESKTCFSPWV 994
Query: 332 GHIHL 336
H H+
Sbjct: 995 CHFHV 999
>F6HUI3_VITVI (tr|F6HUI3) DNA-directed RNA polymerase OS=Vitis vinifera
GN=VIT_02s0025g04530 PE=3 SV=1
Length = 1433
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 141/308 (45%), Gaps = 33/308 (10%)
Query: 52 LEKHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLL 111
++ +DI+ ++ +K + L M+ + SK L K+ QQ LG Q + +
Sbjct: 680 FKQKFRDIQNLVYQYANKDNSLLAMLKAGSKGNLLKLVQQGLCLGLQHSLVPLSFKIPHQ 739
Query: 112 EDVASHFKLKCD--YDGDGYPSAE----YGLLRGCFFHGLDPFEELVHSISTREIMVRSS 165
A+ K K D AE Y ++ F GL+P E VHS+++R+ +
Sbjct: 740 LSCAAWNKQKVPGLIQNDTSEYAESYIPYAVVENSFLMGLNPLECFVHSVTSRDSSFSDN 799
Query: 166 RGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVK--------AGDKTRYL 217
L PGTL + LM +RD+ + YDGTVRN N ++QF Y ++ + T
Sbjct: 800 ADL--PGTLTRRLMFFMRDLYIAYDGTVRNAYGNQLVQFSYNIEHTSTPSDGINEDTCAY 857
Query: 218 FPAGEPVGVLAATSMSNPAYKA------VLDASPSSSCSWELMKEILLCKVNFRNEPIDR 271
G+PVG ++A ++S AY A +L+ SP + +K +L C R DR
Sbjct: 858 DMGGQPVGSISACAISEAAYSALDQPISLLEPSPLLN-----LKRVLEC--GLRKSTADR 910
Query: 272 RVILYLNDCDCGRRYCRENAAYIVKNQLRKVSLKDTAVDFIVEYQQQRKREGSETD-AGL 330
V L+L+ R++ E A VKN L K+ D ++ + Q GS+T +
Sbjct: 911 TVSLFLSKKLEKRKHGFEYGALEVKNHLEKLLFSDIVSTVMIVFSPQ---NGSKTHFSPW 967
Query: 331 VGHIHLDE 338
V H H+ E
Sbjct: 968 VCHFHVCE 975
>J3MZZ4_ORYBR (tr|J3MZZ4) DNA-directed RNA polymerase OS=Oryza brachyantha
GN=OB09G25730 PE=3 SV=1
Length = 1779
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 91/293 (31%), Positives = 134/293 (45%), Gaps = 34/293 (11%)
Query: 65 KFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQL---FVRGRLYSKGLLEDVASHFKLK 121
+ SK + + MI+S SK ++ K QQ +G QL R+ S+ H L
Sbjct: 1051 QHASKDNSMMAMINSGSKGSVLKFVQQTACVGLQLPASIFPFRIPSELSCVSWNRHKSLN 1110
Query: 122 CDYDGDGYPSAE-----YGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFK 176
C+ DG Y ++R F GL+P E L+H+IS R S PGTL +
Sbjct: 1111 CEMT-DGTSERMGGQNIYAVIRNSFLDGLNPLECLLHAISGRANFF--SENADVPGTLTR 1167
Query: 177 NLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAG---DKTRYLFPAGEPVGVLAATSMS 233
LM LRD V YDGTVR+ I+QF Y G D P G PVG AA S+S
Sbjct: 1168 KLMYHLRDTYVAYDGTVRSSYGQQIVQFSYNTADGMFRDHDLEGEP-GAPVGSWAACSIS 1226
Query: 234 NPAYKAV------LDASPSSSCSWELMKEILLCKVNFRNEPIDRRVILYLNDCDCGRRYC 287
AY A+ L+ SP + ++E+L C+ + ++ +D +L+L+ RY
Sbjct: 1227 EAAYGALDHPVNALEDSPLMN-----LQEVLKCRKSTKS--VDHTGLLFLSKHLRKYRYG 1279
Query: 288 RENAAYIVKNQLRKVSLKDTAVDFIVEY--QQQRKREGSETDAGLVGHIHLDE 338
E A+ VK+ L +V D ++ Y +K +G+ + H HL +
Sbjct: 1280 FEYASLQVKDHLERVDFSDLVDAVMILYGGSDMQKTQGNP----WITHFHLSQ 1328
>I1JA29_SOYBN (tr|I1JA29) DNA-directed RNA polymerase OS=Glycine max PE=3 SV=2
Length = 1457
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 88/315 (27%), Positives = 133/315 (42%), Gaps = 56/315 (17%)
Query: 56 MQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLG------------------- 96
++I+ A K+ K + M + SK L K+ Q LG
Sbjct: 706 FRNIQSLADKYACKGNSFLAMFKAGSKGNLLKLVQHSMCLGMQNSLVRLSYRLPRHLSCA 765
Query: 97 ---QQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVH 153
Q +V S G LE V S+ Y ++ F GL+P E VH
Sbjct: 766 DWNSQKWVDSIQMSSGTLESVQSYIP--------------YAVVESSFLTGLNPLECFVH 811
Query: 154 SISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGDK 213
S++ R+ L PGTL + LM +RD+ YDGTVRN+ N +IQF Y ++
Sbjct: 812 SVTNRDSSFSDHADL--PGTLTRRLMFFMRDLYDAYDGTVRNLYGNQLIQFSYDIEEDSS 869
Query: 214 TRYLFP----AGEPVGVLAATSMSNPAYKA------VLDASPSSSCSWELMKEILLCKVN 263
F GE VG ++A ++S AY A +L+ SP + +K +L C
Sbjct: 870 CNKGFQQYALGGESVGAISACAISEAAYSALGQPVSLLETSPLLN-----LKNVLECGSR 924
Query: 264 FRNEPIDRRVILYLNDCDCGRRYCRENAAYIVKNQLRKVSLKDTAVDFIVEYQQQRKREG 323
RN D+ V L+L++ +R+ E AA VKN L ++ + ++ + R
Sbjct: 925 KRNG--DQTVSLFLSEKLGKQRHGFEYAALEVKNYLERLLFSNIVSKVMIIFTPHDSR-S 981
Query: 324 SETDAGLVGHIHLDE 338
E + V H HLD+
Sbjct: 982 QEKYSPWVCHFHLDK 996
>K7K551_SOYBN (tr|K7K551) DNA-directed RNA polymerase OS=Glycine max PE=3 SV=1
Length = 1454
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 88/315 (27%), Positives = 133/315 (42%), Gaps = 56/315 (17%)
Query: 56 MQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLG------------------- 96
++I+ A K+ K + M + SK L K+ Q LG
Sbjct: 706 FRNIQSLADKYACKGNSFLAMFKAGSKGNLLKLVQHSMCLGMQNSLVRLSYRLPRHLSCA 765
Query: 97 ---QQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVH 153
Q +V S G LE V S+ Y ++ F GL+P E VH
Sbjct: 766 DWNSQKWVDSIQMSSGTLESVQSYIP--------------YAVVESSFLTGLNPLECFVH 811
Query: 154 SISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGDK 213
S++ R+ L PGTL + LM +RD+ YDGTVRN+ N +IQF Y ++
Sbjct: 812 SVTNRDSSFSDHADL--PGTLTRRLMFFMRDLYDAYDGTVRNLYGNQLIQFSYDIEEDSS 869
Query: 214 TRYLFP----AGEPVGVLAATSMSNPAYKA------VLDASPSSSCSWELMKEILLCKVN 263
F GE VG ++A ++S AY A +L+ SP + +K +L C
Sbjct: 870 CNKGFQQYALGGESVGAISACAISEAAYSALGQPVSLLETSPLLN-----LKNVLECGSR 924
Query: 264 FRNEPIDRRVILYLNDCDCGRRYCRENAAYIVKNQLRKVSLKDTAVDFIVEYQQQRKREG 323
RN D+ V L+L++ +R+ E AA VKN L ++ + ++ + R
Sbjct: 925 KRNG--DQTVSLFLSEKLGKQRHGFEYAALEVKNYLERLLFSNIVSKVMIIFTPHDSR-S 981
Query: 324 SETDAGLVGHIHLDE 338
E + V H HLD+
Sbjct: 982 QEKYSPWVCHFHLDK 996
>Q7XTZ3_ORYSJ (tr|Q7XTZ3) DNA-directed RNA polymerase OS=Oryza sativa subsp.
japonica GN=OSJNBa0019K04.4 PE=3 SV=2
Length = 1664
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 84/254 (33%), Positives = 117/254 (46%), Gaps = 18/254 (7%)
Query: 65 KFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRG---RLYSKGLLEDVASHFKLK 121
++VSK + + MI+S SK ++ K QQ +G QL R+ S+ H
Sbjct: 628 QYVSKDNSMMTMINSGSKGSVLKFVQQTACVGLQLPASKFPFRIPSQLSCVSWNRHKSRN 687
Query: 122 CDYDGDGYPSA-----EYGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFK 176
C+ DG Y ++R F GL+P E L+H+IS R S PGTL +
Sbjct: 688 CEIT-DGTSECVGGQDMYAVVRNSFLDGLNPLECLLHAISGRANFF--SENADVPGTLTR 744
Query: 177 NLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGDKTRYLFPA--GEPVGVLAATSMSN 234
LM LRD V YDGTVR+ I++F Y G + + G PVG AA S+S
Sbjct: 745 KLMYHLRDTYVAYDGTVRSSYGQQIVRFSYDTADGMYSDHDLEGEPGAPVGSWAACSISE 804
Query: 235 PAYKAVLDASPSSSCSWELM--KEILLCKVNFRNEPIDRRVILYLNDCDCGRRYCRENAA 292
AY A LD +S LM +E+L C +D +L+L+ RY E A+
Sbjct: 805 AAYGA-LDHPVNSLEDSPLMNLQEVLKCHKG--TNSLDHTGLLFLSKHLRKYRYGFEYAS 861
Query: 293 YIVKNQLRKVSLKD 306
VK+ L +V D
Sbjct: 862 LEVKDHLERVDFSD 875
>Q01JX0_ORYSA (tr|Q01JX0) DNA-directed RNA polymerase OS=Oryza sativa
GN=OSIGBa0147H17.3 PE=3 SV=1
Length = 1407
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 86/255 (33%), Positives = 119/255 (46%), Gaps = 20/255 (7%)
Query: 65 KFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRG---RLYSKGLLEDVASHFKLK 121
++VSK + + MI+S SK ++ K QQ +G QL R+ S+ H L
Sbjct: 705 QYVSKDNSMMTMINSGSKGSVLKFVQQTACVGLQLPASKFPFRIPSQLSCVSWNRHKSLN 764
Query: 122 CDYDGDGYPSA-----EYGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFK 176
C+ DG Y ++R F GL+P E L+H+IS R S PGTL +
Sbjct: 765 CEIT-DGTSECVGGQDMYAVIRNSFLDGLNPLECLLHAISGRANFF--SENADVPGTLTR 821
Query: 177 NLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGDKTRYLFPAGE---PVGVLAATSMS 233
LM LRD V YDGTVR+ I++F Y G + + GE PVG AA S+S
Sbjct: 822 KLMYHLRDTYVAYDGTVRSSYGQQIVRFSYDTADGMYSDHDL-EGEPVAPVGSWAACSIS 880
Query: 234 NPAYKAVLDASPSSSCSWELM--KEILLCKVNFRNEPIDRRVILYLNDCDCGRRYCRENA 291
AY A LD +S LM +E+L C +D +L+L+ RY E A
Sbjct: 881 EAAYGA-LDHPVNSLEDSPLMNLQEVLKCHKG--TNSLDHTGLLFLSKHLRKYRYGFEYA 937
Query: 292 AYIVKNQLRKVSLKD 306
+ VK+ L +V D
Sbjct: 938 SLEVKDHLERVDFSD 952
>K7LMQ8_SOYBN (tr|K7LMQ8) DNA-directed RNA polymerase OS=Glycine max PE=3 SV=1
Length = 1454
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 114/244 (46%), Gaps = 38/244 (15%)
Query: 107 SKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSR 166
S G LE V S+ Y ++ F GL+P E VHS++ R+
Sbjct: 779 SSGTLESVQSYI--------------PYAVVESSFLTGLNPLECFVHSVTNRDSSFSDHA 824
Query: 167 GLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGDKTRYLFP----AGE 222
L PGTL + LM +RD+ YDGTVRN+ N +IQF Y ++ F GE
Sbjct: 825 DL--PGTLTRRLMFFMRDLHDAYDGTVRNLYGNQLIQFSYDIEEDSSCDKGFQEYAIGGE 882
Query: 223 PVGVLAATSMSNPAYKA------VLDASPSSSCSWELMKEILLCKVNFRNEPIDRRVILY 276
PVG ++A ++S AY A +L+ SP + +K +L C RN D+ V L+
Sbjct: 883 PVGAISACAISEAAYSALGQPVSLLETSPLLN-----LKNVLECGSRKRNG--DQTVSLF 935
Query: 277 LNDCDCGRRYCRENAAYIVKNQLRKVSLKDTAVDFIVEYQQQRKREGS--ETDAGLVGHI 334
L++ +R+ E AA VKN L ++ + ++ + +GS E + V H
Sbjct: 936 LSEKLGKQRHGFEYAALEVKNYLERLLFSNIVSTVMIIFTPH---DGSSQEKYSPWVCHF 992
Query: 335 HLDE 338
HLD+
Sbjct: 993 HLDK 996
>B9GKP9_POPTR (tr|B9GKP9) DNA-directed RNA polymerase OS=Populus trichocarpa
GN=NRPD901 PE=3 SV=1
Length = 1517
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 84/298 (28%), Positives = 135/298 (45%), Gaps = 31/298 (10%)
Query: 56 MQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVA 115
+DI+ K+ S+ + M + SK L K+ Q LG Q + + A
Sbjct: 762 FRDIQSLVYKYASQDNSFLAMFKAGSKGNLLKLVQHSMCLGLQHALASLSFRIPHQLSCA 821
Query: 116 SHFKLKCDYDGDGYPSAE----YGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEP 171
K K D D SA+ + ++ G F GL+P E VHS+++R+ + L P
Sbjct: 822 GWNKQKAD---DATESAKRYIPHAVVEGSFLSGLNPIECFVHSVTSRDSSFSDNADL--P 876
Query: 172 GTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGDKTRYLFP-------AGEPV 224
GTLF+ +M +RD+ YDGTVRN N ++QF Y + D + + AG PV
Sbjct: 877 GTLFRRMMFFMRDLHGAYDGTVRNAYGNQLVQFSYNIDDMDPSGSVDEINNSDGIAGRPV 936
Query: 225 GVLAATSMSNPAYKA------VLDASPSSSCSWELMKEILLCKVNFRNEPIDRRVILYLN 278
G LAA ++S AY A +L+ SP + +K +L C + + + L+L+
Sbjct: 937 GPLAACAISEAAYSALDQPISLLEKSPLLN-----LKNVLEC--GLKRNSAHQTMSLFLS 989
Query: 279 DCDCGRRYCRENAAYIVKNQLRKVSLKDTAVDFIVEYQQQRKREGSETDAGLVGHIHL 336
+ +R+ E AA V+N L ++ D + + Q +G + V H H+
Sbjct: 990 EKLGRQRHGFEYAALEVQNHLERLLFSDIVSFVRIIFSPQ--SDGRMHFSPWVCHFHV 1045
>G7KER5_MEDTR (tr|G7KER5) DNA-directed RNA polymerase OS=Medicago truncatula
GN=MTR_5g011000 PE=3 SV=1
Length = 1687
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 104/215 (48%), Gaps = 21/215 (9%)
Query: 134 YGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTV 193
+ ++ F GL+P E VHS++ R+ + L PGTL + LM +RD+ YDGTV
Sbjct: 958 HAVVESSFLTGLNPLECFVHSVTNRDSSFSDNADL--PGTLTRRLMFFMRDMYDAYDGTV 1015
Query: 194 RNVCSNSIIQFEYGVKAGDKTRYLFP----AGEPVGVLAATSMSNPAYKA------VLDA 243
RN+ N +IQF Y + F GEPVG L+A ++S AY A +L+A
Sbjct: 1016 RNLYGNQLIQFSYDAEEDSSCDSYFREDIIGGEPVGALSACAVSEAAYSALSQPISLLEA 1075
Query: 244 SPSSSCSWELMKEILLCKVNFRNEPIDRRVILYLNDCDCGRRYCRENAAYIVKNQLRKVS 303
SP + +K +L C R + D+ V L+L++ +R E AA VKN L +
Sbjct: 1076 SPLLN-----LKNVLEC--GSRKKGGDQTVSLFLSEKIGKQRNGFEYAALEVKNYLERYM 1128
Query: 304 LKDTAVDFIVEYQQQRKREGSETDAGLVGHIHLDE 338
+ ++ + Q + + V H HLD+
Sbjct: 1129 FSNIVSTVMIIFTPQHCSQVKYSP--WVCHFHLDK 1161
>M5WEG2_PRUPE (tr|M5WEG2) Uncharacterized protein OS=Prunus persica
GN=PRUPE_ppa000278mg PE=4 SV=1
Length = 1356
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 92/344 (26%), Positives = 151/344 (43%), Gaps = 59/344 (17%)
Query: 34 SPLLYQLRFIYNE--------LVAQQLEKHM-QDIELPAIKFVSKSSRLGDMIDSKSKSA 84
SPL + + +E V KH+ +DI+ A K+ K + L M+ + SK
Sbjct: 577 SPLTFDAEYFCHEKQKSAALSQVVHDAFKHIFRDIQSLAHKYAGKDNSLLTMLKAGSKGN 636
Query: 85 LDKVTQQIGFLGQQ---LFVRGRLYSK------------GLLEDVASHFKLKCDYDGDGY 129
L K+ Q LG Q + + R+ ++ L++ V ++ Y
Sbjct: 637 LQKLVQHSMCLGLQHSLIPLSFRIPNQLSCAAWNNQKACSLIQKVEGTYECVESY----I 692
Query: 130 PSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCY 189
PSA +++ F GL+P E VHS+++R+ + L PGTL + LM ++RD+ Y
Sbjct: 693 PSA---VVKSSFLTGLNPLECFVHSVTSRDSSFSGNADL--PGTLTRKLMFLMRDLYTAY 747
Query: 190 DGTVRNVCSNSIIQFEYGV-----------KAGDKTRYLFPAGEPVGVLAATSMSNPAYK 238
DGTVRN N ++QF Y + A T G+PVG L+A ++S AY
Sbjct: 748 DGTVRNAYGNQLVQFSYDIDMDKSDSTSTSHAKSTTACDGIGGQPVGSLSACALSEAAYS 807
Query: 239 A------VLDASPSSSCSWELMKEILLCKVNFRNEPIDRRVILYLNDCDCGRRYCRENAA 292
A +L+ SP + +K IL C + + + L+L+ RR+ E A
Sbjct: 808 ALDQPVSLLETSPLLN-----LKNILEC--GSKKSSAKQTLSLFLSKKLGRRRHGFEYGA 860
Query: 293 YIVKNQLRKVSLKDTAVDFIVEYQQQRKREGSETDAGLVGHIHL 336
VKN L ++ D ++ + Q + + + V H H+
Sbjct: 861 LEVKNHLVGLTFSDIVSTVMIIFSSQSNSQ--KRFSPWVTHFHI 902
>B9G500_ORYSJ (tr|B9G500) DNA-directed RNA polymerase OS=Oryza sativa subsp.
japonica GN=OsJ_30285 PE=3 SV=1
Length = 1384
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 80/258 (31%), Positives = 116/258 (44%), Gaps = 24/258 (9%)
Query: 64 IKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRG---RLYSKGLLEDVASHFKL 120
++ VSK + + MI+S SK ++ K QQ +G QL R+ S+ L
Sbjct: 681 LQHVSKDNSMMAMINSGSKGSVLKFVQQTACVGLQLPASTFPFRIPSELSCVSWNRQKSL 740
Query: 121 KCDYDGDGYPSAE----YGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFK 176
C+ + Y ++R F GL+P E L+H+IS R S PGTL +
Sbjct: 741 NCEITNNTSECMAGQNMYAVIRNSFLDGLNPLECLLHAISGRANFF--SENADVPGTLTR 798
Query: 177 NLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGDKTRYLFPA--GEPVGVLAATSMSN 234
LM LRD V YDGTVR+ I+QF Y G + G PVG AA S+S
Sbjct: 799 KLMYHLRDTYVAYDGTVRSSYGRQIVQFSYDTADGMNNDHDLEGEPGAPVGSWAACSISE 858
Query: 235 PAYKAV------LDASPSSSCSWELMKEILLCKVNFRNEPIDRRVILYLNDCDCGRRYCR 288
AY A+ L+ SP + ++E+L C ++ +L+L+ RY
Sbjct: 859 AAYGALDHPVNALEDSPLMN-----LQEVLKCHKGTKSAV--HTGLLFLSKYLKKYRYGF 911
Query: 289 ENAAYIVKNQLRKVSLKD 306
E A+ VK+ L +V D
Sbjct: 912 EYASLEVKDHLERVDFSD 929
>B8BED0_ORYSI (tr|B8BED0) DNA-directed RNA polymerase OS=Oryza sativa subsp.
indica GN=OsI_32338 PE=3 SV=1
Length = 1384
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 80/258 (31%), Positives = 115/258 (44%), Gaps = 24/258 (9%)
Query: 64 IKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRG---RLYSKGLLEDVASHFKL 120
++ VSK + + MI+S SK ++ K QQ +G QL R+ S+ L
Sbjct: 681 LQHVSKDNSMMAMINSGSKGSVLKFVQQTACVGLQLPASTFPFRIPSELSCVSWNRQKSL 740
Query: 121 KCDYDGDGYPSAE----YGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFK 176
C+ + Y ++R F GL+P E L+H+IS R S PGTL +
Sbjct: 741 NCEITNNTSECMAGQNMYAVIRNSFLDGLNPLECLLHAISGRANFF--SENADVPGTLTR 798
Query: 177 NLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGDKTRYLFPA--GEPVGVLAATSMSN 234
LM LRD V YDGTVR+ I+QF Y G + G PVG AA S+S
Sbjct: 799 KLMYHLRDTYVAYDGTVRSSYGRQIVQFSYDTADGMNNDHDLEGEPGAPVGSWAACSISE 858
Query: 235 PAYKAV------LDASPSSSCSWELMKEILLCKVNFRNEPIDRRVILYLNDCDCGRRYCR 288
AY A+ L+ SP + ++E+L C ++ +L+L+ RY
Sbjct: 859 AAYGALDHPVNALEDSPLMN-----LQEVLKCHKGTKSAV--HTGLLFLSKYLKKYRYGF 911
Query: 289 ENAAYIVKNQLRKVSLKD 306
E A+ VK+ L V D
Sbjct: 912 EYASLEVKDHLELVDFSD 929
>R0HUP7_9BRAS (tr|R0HUP7) Uncharacterized protein OS=Capsella rubella
GN=CARUB_v10019657mg PE=4 SV=1
Length = 1459
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/295 (26%), Positives = 131/295 (44%), Gaps = 28/295 (9%)
Query: 57 QDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQ------LFVRGRLYSKGL 110
+DI+ A ++ +S+ M + SK + K+ Q +G Q F R +
Sbjct: 717 RDIQALAYRYGDQSNSFLIMSKAGSKGNIGKLVQHSMCIGLQNSAVALSFGFPRKLTCAA 776
Query: 111 LEDVASHFKLKCDYDGDGYPS-AEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLS 169
D S + D S YG++ F GL+P E VHS+++R+ + L
Sbjct: 777 WNDPNSPLRSAKGADKTATESYVPYGVIENSFLTGLNPLESFVHSVTSRDSSFSGNADL- 835
Query: 170 EPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGDKTRYLFPAGEPVGVLAA 229
PGTL + LM +RD+ YDGTVRN N ++QF Y + GE +G L+A
Sbjct: 836 -PGTLSRRLMFFMRDIYAAYDGTVRNSFGNQVVQFTYETDGPVEEI----TGEALGSLSA 890
Query: 230 TSMSNPAYKA------VLDASPSSSCSWELMKEILLCKVNFRNEPIDRRVILYLNDCDCG 283
++S AY A +L+ SP + +K IL C + ++ + LYL++
Sbjct: 891 CALSEAAYSALDQPVSLLETSPLLN-----LKNILEC--GSKKGQREQTISLYLSETLSK 943
Query: 284 RRYCRENAAYIVKNQLRKVSLKDTAVDFIVEYQQQRKREGSETDAGLVGHIHLDE 338
+++ E + +KN L K+S + ++ + + + + V H H+ E
Sbjct: 944 KKHGFEYGSLEIKNYLEKLSFSEIVSTSMIIFSPRTNSKAPLSP--WVCHFHISE 996
>C0JR68_MAIZE (tr|C0JR68) DNA-directed RNA polymerase OS=Zea mays PE=2 SV=1
Length = 1444
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 87/293 (29%), Positives = 135/293 (46%), Gaps = 40/293 (13%)
Query: 65 KFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRG---RLYSKGLLEDVASHFKLK 121
+ VS + + MI++ SK ++ K QQ +G QL R+ S+ L ++ + +
Sbjct: 730 QHVSNDNSMMVMINAGSKGSMLKYAQQTACIGLQLPASKFPFRIPSQ--LSCISWNGQKS 787
Query: 122 CDYDGDGYPSAE-------YGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTL 174
+Y+ + ++E Y +++ F GL+P E L+H+IS R S PGTL
Sbjct: 788 LNYEAES--TSERVGGQNLYAVIKNSFIEGLNPLECLLHAISGRANFF--SENADVPGTL 843
Query: 175 FKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGDKTRYLFPAGEPVGVLAATSMSN 234
+ LM LRD+ V YDGTVR+ I+QF Y D L G PVG AA S+S
Sbjct: 844 TRKLMYHLRDIHVAYDGTVRSSYGQQIVQFSYD-SVDDLVDKL---GAPVGCRAACSISE 899
Query: 235 PAYKAV------LDASPSSSCSWELMKEILLCKVNFRNEPIDRRVILYLNDCDCGRRYCR 288
AY A+ L+ SP + ++E+ C + D +L+L+ RY
Sbjct: 900 AAYGALEHPVNGLEDSPLMN-----LQEVFKCHKATNSG--DHIGLLFLSRHLKKYRYGL 952
Query: 289 ENAAYIVKNQLRKVSLKDTAVDFIVEYQQQRK--REGSETDAGLVGHIHLDEV 339
E A+ VKN L +V+ D ++ Y K EG T H H+++
Sbjct: 953 EYASLEVKNHLERVNFSDLVETIMIIYDGHDKIRNEGMWTT-----HFHINKA 1000
>C0JR65_MAIZE (tr|C0JR65) DNA-directed RNA polymerase OS=Zea mays PE=2 SV=1
Length = 1444
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 86/291 (29%), Positives = 132/291 (45%), Gaps = 36/291 (12%)
Query: 65 KFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRG---RLYSKGLLEDVASHFKLK 121
+ VS + + MI++ SK ++ K QQ +G QL R+ S+ L ++ + +
Sbjct: 730 QHVSNDNSMMVMINAGSKGSMLKYAQQTACIGLQLPASKFPFRIPSQ--LSCISWNGQKS 787
Query: 122 CDYDGDGYPSAE-----YGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFK 176
+Y+ + Y +++ F GL+P E L+H+IS R S PGTL +
Sbjct: 788 LNYEAESTSERVGGQNLYAVIKNSFIEGLNPLECLLHAISGRANFF--SENADVPGTLTR 845
Query: 177 NLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGDKTRYLFPAGEPVGVLAATSMSNPA 236
LM LRD+ V YDGTVR+ I+QF Y D L G PVG AA S+S A
Sbjct: 846 KLMYHLRDIHVAYDGTVRSSYGQQIVQFSYD-SVDDLVDKL---GAPVGCRAACSISEAA 901
Query: 237 YKAV------LDASPSSSCSWELMKEILLCKVNFRNEPIDRRVILYLNDCDCGRRYCREN 290
Y A+ L+ SP + ++E+ C + D +L+L+ RY E
Sbjct: 902 YGALEHPVNGLEDSPLMN-----LQEVFKCHKATNSG--DHIGLLFLSRHLKKYRYGLEY 954
Query: 291 AAYIVKNQLRKVSLKDTAVDFIVEYQQQRK--REGSETDAGLVGHIHLDEV 339
A+ VKN L +V+ D ++ Y K EG T H H+++
Sbjct: 955 ASLEVKNHLERVNFSDLVETIMIIYDGHDKIRNEGMWTT-----HFHINKA 1000
>D7KU36_ARALL (tr|D7KU36) DNA-directed RNA polymerase OS=Arabidopsis lyrata
subsp. lyrata GN=ARALYDRAFT_893170 PE=3 SV=1
Length = 1456
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 92/181 (50%), Gaps = 23/181 (12%)
Query: 134 YGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTV 193
YG++ F GL+P E VHS+++R+ + L PGTL + LM +RD+ YDGTV
Sbjct: 794 YGVIENSFLTGLNPLESFVHSVTSRDSSFSGNADL--PGTLSRRLMFFMRDIYAAYDGTV 851
Query: 194 RNVCSNSIIQFEYGVKAG--DKTRYLFPAGEPVGVLAATSMSNPAYKA------VLDASP 245
RN N ++QF Y D T GE +G L+A ++S AY A +L+ SP
Sbjct: 852 RNSFGNQLVQFTYETDGPVEDIT------GEALGSLSACALSEAAYSALDQPISLLETSP 905
Query: 246 SSSCSWELMKEILLCKVNFRNEPIDRRVILYLNDCDCGRRYCRENAAYIVKNQLRKVSLK 305
+ +K +L C + ++ + LYL++ +++ E + +KN L K+S
Sbjct: 906 LLN-----LKNVLEC--GSKKGQREQTMTLYLSETLSKKKHGFEYGSLEIKNHLEKLSFS 958
Query: 306 D 306
+
Sbjct: 959 E 959
>M7ZUZ1_TRIUA (tr|M7ZUZ1) DNA-directed RNA polymerase D subunit 1 OS=Triticum
urartu GN=TRIUR3_10627 PE=4 SV=1
Length = 1402
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 89/289 (30%), Positives = 131/289 (45%), Gaps = 18/289 (6%)
Query: 58 DIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASH 117
D++ + +K++ + M ++ SK ++ K QQ +G QL + AS
Sbjct: 701 DLQKMVQQHTAKNNSMMMMTNAGSKGSMLKFVQQTACVGLQLPASRFPFRIPSELSCASW 760
Query: 118 FKLKCDYDGDGYPSAE-YGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFK 176
+ K + G+ Y ++R F GL+P E L+HSIS R S PGTL +
Sbjct: 761 NRHKSEGTGECLGGQNLYAVIRNSFAGGLNPLECLLHSISGRANFF--SENADVPGTLTR 818
Query: 177 NLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGDKTRYLFPAGE---PVGVLAATSMS 233
LM LRD+ V YDGTVR+ I+QF Y A D GE PVG AA S+S
Sbjct: 819 KLMYHLRDLYVAYDGTVRSSYGQQIMQFTYDT-AEDMCSDRNVEGELGAPVGSWAACSIS 877
Query: 234 NPAYKAVLDASPSSSCSWELM--KEILLCKVNFRNEPIDRRVILYLNDCDCGRRYCRENA 291
AY A LD +S LM +++L C+ +D +L+L+ RY E A
Sbjct: 878 EAAYGA-LDHPVNSLEESPLMNLQDVLKCQKG--GTSMDHVGLLFLSKNLKKYRYGLEYA 934
Query: 292 AYIVKNQLRKVSLKDTAVDFIVEYQQQRKREGSETDAG--LVGHIHLDE 338
+ VK+ L V+ D ++ Y G E+ G + H HL +
Sbjct: 935 SLEVKDHLEPVNFSDLVDTVMILYGGC----GIESTKGSAWITHFHLSQ 979
>M0VV74_HORVD (tr|M0VV74) DNA-directed RNA polymerase OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 1025
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 88/288 (30%), Positives = 131/288 (45%), Gaps = 16/288 (5%)
Query: 58 DIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASH 117
D++ + ++++ + M ++ SK ++ K QQ +G QL + AS
Sbjct: 729 DLQKMVQQHTARNNSMMIMTNAGSKGSMLKFVQQTACVGLQLPASRFPFRIPSELSCASW 788
Query: 118 FKLKCDYDGDGYPSAE-YGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFK 176
+ K + G+ Y ++R F GL+P E L+HSIS R S PGTL +
Sbjct: 789 NRHKSEGRGECLGGQNLYAVIRNSFAGGLNPLECLLHSISGRANFF--SENADVPGTLTR 846
Query: 177 NLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGDKTRYLFPAGE---PVGVLAATSMS 233
LM LRD+ V YDGTVR+ I+QF Y A D GE PVG AA S+S
Sbjct: 847 KLMYHLRDLYVAYDGTVRSSYGQQIMQFTYDT-AEDMCSDRNLEGELGAPVGSWAACSIS 905
Query: 234 NPAYKAVLDASPSSSCSWELM--KEILLCKVNFRNEPIDRRVILYLNDCDCGRRYCRENA 291
AY A LD +S LM +++L C+ +D +L+L+ RY E A
Sbjct: 906 EAAYGA-LDHPVNSLEESPLMNLQDVLKCQKG--GTSMDHVGLLFLSKNLKKYRYGLEYA 962
Query: 292 AYIVKNQLRKVSLKDTAVDFIVEYQQQRKREGSETDAGLVGHIHLDEV 339
+ VK+ L V+ D +V + + +GS H HL +V
Sbjct: 963 SLEVKDYLEPVNFSDLVDTVMVLHGGCQSTKGSP----WTTHFHLSQV 1006
>C5XUR6_SORBI (tr|C5XUR6) Putative uncharacterized protein Sb04g003755 (Fragment)
OS=Sorghum bicolor GN=Sb04g003755 PE=4 SV=1
Length = 126
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 60/84 (71%), Gaps = 1/84 (1%)
Query: 256 EILLCKVNFRNEPIDRRVILYLNDCDCGRRYCRENAAYIVKNQLRKVSLKDTAVDFIVEY 315
EIL + +++N+ DR+V+L+L+DC C +++C+E AA V++ L++V+L D A D +E+
Sbjct: 1 EILQTRTSYKNDAKDRKVVLFLSDCSCAKKFCKERAALAVQSCLKRVTLGDCATDICIEH 60
Query: 316 QQQRKREG-SETDAGLVGHIHLDE 338
Q+Q +G SE LVGHIHLD+
Sbjct: 61 QKQINLDGTSEAAPTLVGHIHLDK 84
>M8C5N9_AEGTA (tr|M8C5N9) DNA-directed RNA polymerase III subunit RPC1
OS=Aegilops tauschii GN=F775_07056 PE=4 SV=1
Length = 1334
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 89/289 (30%), Positives = 131/289 (45%), Gaps = 18/289 (6%)
Query: 58 DIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASH 117
D++ + +K++ + M ++ SK ++ K QQ +G QL + AS
Sbjct: 665 DLQKMVQQHTAKNNSMMMMTNAGSKGSMLKFVQQTACVGLQLPASRFPFRIPSELSCASW 724
Query: 118 FKLKCDYDGDGYPSAE-YGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFK 176
+ K + G+ Y ++R F GL+P E L+HSIS R S PGTL +
Sbjct: 725 NRHKSEGTGECLGGQNLYAVIRNSFAGGLNPLECLLHSISGRANFF--SENADVPGTLTR 782
Query: 177 NLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGDKTRYLFPAGE---PVGVLAATSMS 233
LM LRD+ V YDGTVR+ I+QF Y A D GE PVG AA S+S
Sbjct: 783 KLMYHLRDLYVAYDGTVRSSYGQQIMQFTYDT-AEDMCSDRNVEGELGAPVGSWAACSIS 841
Query: 234 NPAYKAVLDASPSSSCSWELM--KEILLCKVNFRNEPIDRRVILYLNDCDCGRRYCRENA 291
AY A LD +S LM +++L C+ +D +L+L+ RY E A
Sbjct: 842 EAAYGA-LDHPVNSLEESPLMNLQDVLKCQKG--GTSMDHVGLLFLSKNLKKYRYGLEYA 898
Query: 292 AYIVKNQLRKVSLKDTAVDFIVEYQQQRKREGSETDAG--LVGHIHLDE 338
+ VK+ L V+ D ++ Y G E+ G + H HL +
Sbjct: 899 SLEVKDHLEPVNFSDLVDTVMILYGGC----GIESTKGSPWITHFHLSQ 943
>K3XDU8_SETIT (tr|K3XDU8) DNA-directed RNA polymerase OS=Setaria italica
GN=Si000065m.g PE=3 SV=1
Length = 1303
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 81/264 (30%), Positives = 118/264 (44%), Gaps = 25/264 (9%)
Query: 67 VSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRG---RLYSKGLLEDVASHFKLKCD 123
VS + + MI++ SK ++ K QQ +G QL R+ S+ L C+
Sbjct: 585 VSNDNSMMVMINAGSKGSMLKYVQQTACVGLQLPASKFPFRIPSQLSCVSWNRQKSLNCE 644
Query: 124 YDGDGYP---SAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMA 180
+ Y ++R F GL+P E L+H+IS R S PGTL + LM
Sbjct: 645 AESTSEHVEGQNLYAVIRNSFIEGLNPLECLLHAISGRANFF--SEHADVPGTLTRKLMY 702
Query: 181 ILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGD---KTRYLFPAGEPVGVLAATSMSNPAY 237
LRD+ V YDGTVR+ I+QF Y A D + G PVG AA S+S AY
Sbjct: 703 HLRDLHVAYDGTVRSSYGQHIMQFSYDT-ADDMCCNHDLVGELGAPVGSWAACSISEAAY 761
Query: 238 KAV------LDASPSSSCSWELMKEILLCKVNFRNEPIDRRVILYLNDCDCGRRYCRENA 291
A+ L+ SP + ++E+ C + D +L+L+ RY E A
Sbjct: 762 GALDHPVNGLEDSPLMN-----LQEVFKCHKATNSG--DHVGLLFLSKHLKKYRYSLEYA 814
Query: 292 AYIVKNQLRKVSLKDTAVDFIVEY 315
+ VKN L +V+ D ++ Y
Sbjct: 815 SLEVKNHLERVNFSDLVETIMIIY 838
>B9T903_RICCO (tr|B9T903) Putative uncharacterized protein (Fragment) OS=Ricinus
communis GN=RCOM_2104770 PE=4 SV=1
Length = 89
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/97 (53%), Positives = 60/97 (61%), Gaps = 12/97 (12%)
Query: 130 PSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCY 189
PS+E +RG F L EEL S + RE + R KN MAILRDVV+CY
Sbjct: 5 PSSEI-RMRGWFIRALS--EEL--SSAHREDCLNLER-------CSKNFMAILRDVVMCY 52
Query: 190 DGTVRNVCSNSIIQFEYGVKAGDKTRYLFPAGEPVGV 226
DGTVRNVCSN I Q EYG KAG K++ LF A EPVG+
Sbjct: 53 DGTVRNVCSNPITQSEYGGKAGTKSQSLFLASEPVGL 89
>M0VV70_HORVD (tr|M0VV70) DNA-directed RNA polymerase OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 682
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 87/287 (30%), Positives = 130/287 (45%), Gaps = 16/287 (5%)
Query: 58 DIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASH 117
D++ + ++++ + M ++ SK ++ K QQ +G QL + AS
Sbjct: 403 DLQKMVQQHTARNNSMMIMTNAGSKGSMLKFVQQTACVGLQLPASRFPFRIPSELSCASW 462
Query: 118 FKLKCDYDGDGYPSAE-YGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFK 176
+ K + G+ Y ++R F GL+P E L+HSIS R S PGTL +
Sbjct: 463 NRHKSEGRGECLGGQNLYAVIRNSFAGGLNPLECLLHSISGRANFF--SENADVPGTLTR 520
Query: 177 NLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGDKTRYLFPAGE---PVGVLAATSMS 233
LM LRD+ V YDGTVR+ I+QF Y A D GE PVG AA S+S
Sbjct: 521 KLMYHLRDLYVAYDGTVRSSYGQQIMQFTYDT-AEDMCSDRNLEGELGAPVGSWAACSIS 579
Query: 234 NPAYKAVLDASPSSSCSWELM--KEILLCKVNFRNEPIDRRVILYLNDCDCGRRYCRENA 291
AY A LD +S LM +++L C+ +D +L+L+ RY E A
Sbjct: 580 EAAYGA-LDHPVNSLEESPLMNLQDVLKCQKG--GTSMDHVGLLFLSKNLKKYRYGLEYA 636
Query: 292 AYIVKNQLRKVSLKDTAVDFIVEYQQQRKREGSETDAGLVGHIHLDE 338
+ VK+ L V+ D +V + + +GS H HL +
Sbjct: 637 SLEVKDYLEPVNFSDLVDTVMVLHGGCQSTKGSP----WTTHFHLSQ 679
>M0VV72_HORVD (tr|M0VV72) DNA-directed RNA polymerase OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 854
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 87/287 (30%), Positives = 130/287 (45%), Gaps = 16/287 (5%)
Query: 58 DIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASH 117
D++ + ++++ + M ++ SK ++ K QQ +G QL + AS
Sbjct: 538 DLQKMVQQHTARNNSMMIMTNAGSKGSMLKFVQQTACVGLQLPASRFPFRIPSELSCASW 597
Query: 118 FKLKCDYDGDGYPSAE-YGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFK 176
+ K + G+ Y ++R F GL+P E L+HSIS R S PGTL +
Sbjct: 598 NRHKSEGRGECLGGQNLYAVIRNSFAGGLNPLECLLHSISGRANFF--SENADVPGTLTR 655
Query: 177 NLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGDKTRYLFPAGE---PVGVLAATSMS 233
LM LRD+ V YDGTVR+ I+QF Y A D GE PVG AA S+S
Sbjct: 656 KLMYHLRDLYVAYDGTVRSSYGQQIMQFTYDT-AEDMCSDRNLEGELGAPVGSWAACSIS 714
Query: 234 NPAYKAVLDASPSSSCSWELM--KEILLCKVNFRNEPIDRRVILYLNDCDCGRRYCRENA 291
AY A LD +S LM +++L C+ +D +L+L+ RY E A
Sbjct: 715 EAAYGA-LDHPVNSLEESPLMNLQDVLKCQKG--GTSMDHVGLLFLSKNLKKYRYGLEYA 771
Query: 292 AYIVKNQLRKVSLKDTAVDFIVEYQQQRKREGSETDAGLVGHIHLDE 338
+ VK+ L V+ D +V + + +GS H HL +
Sbjct: 772 SLEVKDYLEPVNFSDLVDTVMVLHGGCQSTKGSP----WTTHFHLSQ 814
>M0VV73_HORVD (tr|M0VV73) DNA-directed RNA polymerase OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 858
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 87/287 (30%), Positives = 130/287 (45%), Gaps = 16/287 (5%)
Query: 58 DIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASH 117
D++ + ++++ + M ++ SK ++ K QQ +G QL + AS
Sbjct: 542 DLQKMVQQHTARNNSMMIMTNAGSKGSMLKFVQQTACVGLQLPASRFPFRIPSELSCASW 601
Query: 118 FKLKCDYDGDGYPSAE-YGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFK 176
+ K + G+ Y ++R F GL+P E L+HSIS R S PGTL +
Sbjct: 602 NRHKSEGRGECLGGQNLYAVIRNSFAGGLNPLECLLHSISGRANFF--SENADVPGTLTR 659
Query: 177 NLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGDKTRYLFPAGE---PVGVLAATSMS 233
LM LRD+ V YDGTVR+ I+QF Y A D GE PVG AA S+S
Sbjct: 660 KLMYHLRDLYVAYDGTVRSSYGQQIMQFTYDT-AEDMCSDRNLEGELGAPVGSWAACSIS 718
Query: 234 NPAYKAVLDASPSSSCSWELM--KEILLCKVNFRNEPIDRRVILYLNDCDCGRRYCRENA 291
AY A LD +S LM +++L C+ +D +L+L+ RY E A
Sbjct: 719 EAAYGA-LDHPVNSLEESPLMNLQDVLKCQKG--GTSMDHVGLLFLSKNLKKYRYGLEYA 775
Query: 292 AYIVKNQLRKVSLKDTAVDFIVEYQQQRKREGSETDAGLVGHIHLDE 338
+ VK+ L V+ D +V + + +GS H HL +
Sbjct: 776 SLEVKDYLEPVNFSDLVDTVMVLHGGCQSTKGSP----WTTHFHLSQ 818
>M0VV69_HORVD (tr|M0VV69) DNA-directed RNA polymerase OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 1056
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 87/287 (30%), Positives = 130/287 (45%), Gaps = 16/287 (5%)
Query: 58 DIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASH 117
D++ + ++++ + M ++ SK ++ K QQ +G QL + AS
Sbjct: 729 DLQKMVQQHTARNNSMMIMTNAGSKGSMLKFVQQTACVGLQLPASRFPFRIPSELSCASW 788
Query: 118 FKLKCDYDGDGYPSAE-YGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFK 176
+ K + G+ Y ++R F GL+P E L+HSIS R S PGTL +
Sbjct: 789 NRHKSEGRGECLGGQNLYAVIRNSFAGGLNPLECLLHSISGRANFF--SENADVPGTLTR 846
Query: 177 NLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGDKTRYLFPAGE---PVGVLAATSMS 233
LM LRD+ V YDGTVR+ I+QF Y A D GE PVG AA S+S
Sbjct: 847 KLMYHLRDLYVAYDGTVRSSYGQQIMQFTYDT-AEDMCSDRNLEGELGAPVGSWAACSIS 905
Query: 234 NPAYKAVLDASPSSSCSWELM--KEILLCKVNFRNEPIDRRVILYLNDCDCGRRYCRENA 291
AY A LD +S LM +++L C+ +D +L+L+ RY E A
Sbjct: 906 EAAYGA-LDHPVNSLEESPLMNLQDVLKCQKG--GTSMDHVGLLFLSKNLKKYRYGLEYA 962
Query: 292 AYIVKNQLRKVSLKDTAVDFIVEYQQQRKREGSETDAGLVGHIHLDE 338
+ VK+ L V+ D +V + + +GS H HL +
Sbjct: 963 SLEVKDYLEPVNFSDLVDTVMVLHGGCQSTKGSP----WTTHFHLSQ 1005
>M0VV68_HORVD (tr|M0VV68) DNA-directed RNA polymerase OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 869
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 87/287 (30%), Positives = 130/287 (45%), Gaps = 16/287 (5%)
Query: 58 DIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASH 117
D++ + ++++ + M ++ SK ++ K QQ +G QL + AS
Sbjct: 542 DLQKMVQQHTARNNSMMIMTNAGSKGSMLKFVQQTACVGLQLPASRFPFRIPSELSCASW 601
Query: 118 FKLKCDYDGDGYPSAE-YGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFK 176
+ K + G+ Y ++R F GL+P E L+HSIS R S PGTL +
Sbjct: 602 NRHKSEGRGECLGGQNLYAVIRNSFAGGLNPLECLLHSISGRANFF--SENADVPGTLTR 659
Query: 177 NLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGDKTRYLFPAGE---PVGVLAATSMS 233
LM LRD+ V YDGTVR+ I+QF Y A D GE PVG AA S+S
Sbjct: 660 KLMYHLRDLYVAYDGTVRSSYGQQIMQFTYDT-AEDMCSDRNLEGELGAPVGSWAACSIS 718
Query: 234 NPAYKAVLDASPSSSCSWELM--KEILLCKVNFRNEPIDRRVILYLNDCDCGRRYCRENA 291
AY A LD +S LM +++L C+ +D +L+L+ RY E A
Sbjct: 719 EAAYGA-LDHPVNSLEESPLMNLQDVLKCQKG--GTSMDHVGLLFLSKNLKKYRYGLEYA 775
Query: 292 AYIVKNQLRKVSLKDTAVDFIVEYQQQRKREGSETDAGLVGHIHLDE 338
+ VK+ L V+ D +V + + +GS H HL +
Sbjct: 776 SLEVKDYLEPVNFSDLVDTVMVLHGGCQSTKGSP----WTTHFHLSQ 818
>M0VV71_HORVD (tr|M0VV71) DNA-directed RNA polymerase OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 1045
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 87/287 (30%), Positives = 130/287 (45%), Gaps = 16/287 (5%)
Query: 58 DIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASH 117
D++ + ++++ + M ++ SK ++ K QQ +G QL + AS
Sbjct: 729 DLQKMVQQHTARNNSMMIMTNAGSKGSMLKFVQQTACVGLQLPASRFPFRIPSELSCASW 788
Query: 118 FKLKCDYDGDGYPSAE-YGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFK 176
+ K + G+ Y ++R F GL+P E L+HSIS R S PGTL +
Sbjct: 789 NRHKSEGRGECLGGQNLYAVIRNSFAGGLNPLECLLHSISGRANFF--SENADVPGTLTR 846
Query: 177 NLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGDKTRYLFPAGE---PVGVLAATSMS 233
LM LRD+ V YDGTVR+ I+QF Y A D GE PVG AA S+S
Sbjct: 847 KLMYHLRDLYVAYDGTVRSSYGQQIMQFTYDT-AEDMCSDRNLEGELGAPVGSWAACSIS 905
Query: 234 NPAYKAVLDASPSSSCSWELM--KEILLCKVNFRNEPIDRRVILYLNDCDCGRRYCRENA 291
AY A LD +S LM +++L C+ +D +L+L+ RY E A
Sbjct: 906 EAAYGA-LDHPVNSLEESPLMNLQDVLKCQKG--GTSMDHVGLLFLSKNLKKYRYGLEYA 962
Query: 292 AYIVKNQLRKVSLKDTAVDFIVEYQQQRKREGSETDAGLVGHIHLDE 338
+ VK+ L V+ D +V + + +GS H HL +
Sbjct: 963 SLEVKDYLEPVNFSDLVDTVMVLHGGCQSTKGSP----WTTHFHLSQ 1005
>F2E4M8_HORVD (tr|F2E4M8) DNA-directed RNA polymerase OS=Hordeum vulgare var.
distichum PE=2 SV=1
Length = 1859
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 99/226 (43%), Gaps = 25/226 (11%)
Query: 4 IFSNGFSVGLHDFSISGAVKRVTDRNIG----KVSPLLYQ-------------LRFIYNE 46
+ NGFS+G+ D A + IG +V L+ Q + +
Sbjct: 675 LLQNGFSIGIGDTIADAATMEKINETIGTAKNEVKELIKQAQEKNLEPEPGRTMMESFEN 734
Query: 47 LVAQQLEKHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLY 106
V Q L K D A K +S+S+ L M+ + SK + ++Q +GQQ V G+
Sbjct: 735 RVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQ-NVEGKRI 793
Query: 107 SKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSR 166
G ++ HF D Y G + + GL P E H++ RE ++ ++
Sbjct: 794 PFGFVDRTLPHFT------KDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 847
Query: 167 GLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGD 212
SE G + + L+ + D++V YDGTVRN + +IQF YG D
Sbjct: 848 KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDGMD 892
>M0YUM0_HORVD (tr|M0YUM0) DNA-directed RNA polymerase OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 1730
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 99/226 (43%), Gaps = 25/226 (11%)
Query: 4 IFSNGFSVGLHDFSISGAVKRVTDRNIG----KVSPLLYQ-------------LRFIYNE 46
+ NGFS+G+ D A + IG +V L+ Q + +
Sbjct: 576 LLQNGFSIGIGDTIADAATMEKINETIGTAKNEVKELIKQAQEKNLEPEPGRTMMESFEN 635
Query: 47 LVAQQLEKHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLY 106
V Q L K D A K +S+S+ L M+ + SK + ++Q +GQQ V G+
Sbjct: 636 RVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQ-NVEGKRI 694
Query: 107 SKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSR 166
G ++ HF D Y G + + GL P E H++ RE ++ ++
Sbjct: 695 PFGFVDRTLPHFT------KDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 748
Query: 167 GLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGD 212
SE G + + L+ + D++V YDGTVRN + +IQF YG D
Sbjct: 749 KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDGMD 793
>M0YUL9_HORVD (tr|M0YUL9) DNA-directed RNA polymerase OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 1711
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 99/226 (43%), Gaps = 25/226 (11%)
Query: 4 IFSNGFSVGLHDFSISGAVKRVTDRNIG----KVSPLLYQ-------------LRFIYNE 46
+ NGFS+G+ D A + IG +V L+ Q + +
Sbjct: 576 LLQNGFSIGIGDTIADAATMEKINETIGTAKNEVKELIKQAQEKNLEPEPGRTMMESFEN 635
Query: 47 LVAQQLEKHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLY 106
V Q L K D A K +S+S+ L M+ + SK + ++Q +GQQ V G+
Sbjct: 636 RVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQ-NVEGKRI 694
Query: 107 SKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSR 166
G ++ HF D Y G + + GL P E H++ RE ++ ++
Sbjct: 695 PFGFVDRTLPHFT------KDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 748
Query: 167 GLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGD 212
SE G + + L+ + D++V YDGTVRN + +IQF YG D
Sbjct: 749 KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDGMD 793
>A5BZZ3_VITVI (tr|A5BZZ3) DNA-directed RNA polymerase OS=Vitis vinifera
GN=VITISV_011232 PE=3 SV=1
Length = 1393
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 101/214 (47%), Gaps = 22/214 (10%)
Query: 52 LEKHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLL 111
++ +DI+ ++ +K + L M+ + SK L K+ QQ LG Q + +
Sbjct: 707 FKQKFRDIQNLVYQYANKDNSLLAMLKAGSKGNLLKLVQQGLCLGLQHSLVPLSFKIPHQ 766
Query: 112 EDVASHFKLKCD--YDGDGYPSAE----YGLLRGCFFHGLDPFEELVHSISTREIMVRSS 165
A+ K K D AE Y ++ F GL+P E VHS+++R+ +
Sbjct: 767 LSCAAWNKQKVPGLIQNDTSEYAESYIPYAVVENSFLMGLNPLECFVHSVTSRDSSFSDN 826
Query: 166 RGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVK--------AGDKTRYL 217
L PGTL + LM +RD+ + YDGTVRN N ++QF Y ++ + T
Sbjct: 827 ADL--PGTLTRRLMFFMRDLYIAYDGTVRNAYGNQLVQFSYNIEHTSTPSDGINEDTCAY 884
Query: 218 FPAGEPVGVLAATSMSNPAYKA------VLDASP 245
G+PVG ++A ++S AY A +L+ SP
Sbjct: 885 DMGGQPVGSISACAISEAAYSALDQPISLLEPSP 918
>N1R1H3_AEGTA (tr|N1R1H3) DNA-directed RNA polymerase II subunit RPB1 OS=Aegilops
tauschii GN=F775_08120 PE=4 SV=1
Length = 1861
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 98/221 (44%), Gaps = 25/221 (11%)
Query: 4 IFSNGFSVGLHDFSISGAVKRVTDRNIG----KVSPLLYQ-------------LRFIYNE 46
+ NGFS+G+ D A + IG +V L+ Q + +
Sbjct: 675 LLQNGFSIGIGDTIADAATMEKINETIGTAKNEVKELIKQAQEKNLEPEPGRTMMESFEN 734
Query: 47 LVAQQLEKHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLY 106
V Q L K D A K +S+S+ L M+ + SK + ++Q +GQQ V G+
Sbjct: 735 RVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQ-NVEGKRI 793
Query: 107 SKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSR 166
G ++ HF D Y G + + GL P E H++ RE ++ ++
Sbjct: 794 PFGFVDRTLPHFT------KDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 847
Query: 167 GLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 207
SE G + + L+ + D++V YDGTVRN + +IQF YG
Sbjct: 848 KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYG 887
>M4EFP9_BRARP (tr|M4EFP9) DNA-directed RNA polymerase OS=Brassica rapa subsp.
pekinensis GN=Bra027611 PE=3 SV=1
Length = 1443
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 92/186 (49%), Gaps = 22/186 (11%)
Query: 134 YGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTV 193
+G++ F GL+P E VHS+++R+ + L PGTL + LM +RD+ YDGTV
Sbjct: 782 FGVVESSFLTGLNPLESFVHSVTSRDSSFSGNADL--PGTLSRKLMFFMRDIYAAYDGTV 839
Query: 194 RNVCSNSIIQFEYGVKAGDKTRYLFPAGEPVGVLAATSMSNPAYKA------VLDASPSS 247
RN N ++QF Y ++ D GE VG L+A +++ AY A +L+ SP
Sbjct: 840 RNSFGNHLVQFRY--ESSDDAEEDM-TGEAVGSLSACAITEAAYSALDQPISLLETSPLL 896
Query: 248 SCSWELMKEILLC--KVNFRNEPIDRRVILYLNDCDCGRRYCRENAAYIVKNQLRKVSLK 305
+ +K +L C K + + + LYL++ +++ E A +K L K+
Sbjct: 897 N-----LKNVLECGSKKGLKEQTMS----LYLSETLSKKKHGFEYGALDIKRHLEKLCFS 947
Query: 306 DTAVDF 311
+ F
Sbjct: 948 EIVSTF 953
>M7ZRY5_TRIUA (tr|M7ZRY5) DNA-directed RNA polymerase II subunit RPB1 OS=Triticum
urartu GN=TRIUR3_24636 PE=4 SV=1
Length = 2040
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 99/226 (43%), Gaps = 25/226 (11%)
Query: 4 IFSNGFSVGLHDFSISGAVKRVTDRNIG----KVSPLLYQ-------------LRFIYNE 46
+ NGFS+G+ D A + IG +V L+ Q + +
Sbjct: 675 LLQNGFSIGIGDTIADAATMEKINETIGTAKNEVKELIKQAQEKNLEPEPGRTMMESFEN 734
Query: 47 LVAQQLEKHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLY 106
V Q L K D A K +S+S+ L M+ + SK + ++Q +GQQ V G+
Sbjct: 735 RVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQ-NVEGKRI 793
Query: 107 SKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSR 166
G ++ HF D Y G + + GL P E H++ RE ++ ++
Sbjct: 794 PFGFVDRTLPHFT------KDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 847
Query: 167 GLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGD 212
SE G + + L+ + D++V YDGTVRN + +IQF YG D
Sbjct: 848 KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDGMD 892
>M0YUL8_HORVD (tr|M0YUL8) DNA-directed RNA polymerase OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 1760
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 99/226 (43%), Gaps = 25/226 (11%)
Query: 4 IFSNGFSVGLHDFSISGAVKRVTDRNIG----KVSPLLYQ-------------LRFIYNE 46
+ NGFS+G+ D A + IG +V L+ Q + +
Sbjct: 576 LLQNGFSIGIGDTIADAATMEKINETIGTAKNEVKELIKQAQEKNLEPEPGRTMMESFEN 635
Query: 47 LVAQQLEKHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLY 106
V Q L K D A K +S+S+ L M+ + SK + ++Q +GQQ V G+
Sbjct: 636 RVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQ-NVEGKRI 694
Query: 107 SKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSR 166
G ++ HF D Y G + + GL P E H++ RE ++ ++
Sbjct: 695 PFGFVDRTLPHFT------KDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 748
Query: 167 GLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGD 212
SE G + + L+ + D++V YDGTVRN + +IQF YG D
Sbjct: 749 KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDGMD 793
>M0YUM1_HORVD (tr|M0YUM1) DNA-directed RNA polymerase OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 1572
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 99/226 (43%), Gaps = 25/226 (11%)
Query: 4 IFSNGFSVGLHDFSISGAVKRVTDRNIG----KVSPLLYQ-------------LRFIYNE 46
+ NGFS+G+ D A + IG +V L+ Q + +
Sbjct: 493 LLQNGFSIGIGDTIADAATMEKINETIGTAKNEVKELIKQAQEKNLEPEPGRTMMESFEN 552
Query: 47 LVAQQLEKHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLY 106
V Q L K D A K +S+S+ L M+ + SK + ++Q +GQQ V G+
Sbjct: 553 RVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQ-NVEGKRI 611
Query: 107 SKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSR 166
G ++ HF D Y G + + GL P E H++ RE ++ ++
Sbjct: 612 PFGFVDRTLPHFT------KDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 665
Query: 167 GLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGD 212
SE G + + L+ + D++V YDGTVRN + +IQF YG D
Sbjct: 666 KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDGMD 710
>F6H0D9_VITVI (tr|F6H0D9) DNA-directed RNA polymerase OS=Vitis vinifera
GN=VIT_18s0001g00860 PE=3 SV=1
Length = 1852
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 98/226 (43%), Gaps = 25/226 (11%)
Query: 4 IFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQL--------------RFI---YNE 46
+ NGFS+G+ D A + I K + +L R + +
Sbjct: 679 LLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAQERQLEAEPGRTMMESFEN 738
Query: 47 LVAQQLEKHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLY 106
V Q L K D A K +S+S+ L M+ + SK + ++Q +GQQ V G+
Sbjct: 739 RVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQ-NVEGKRI 797
Query: 107 SKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSR 166
G ++ HF D Y G + + GL P E H++ RE ++ ++
Sbjct: 798 PYGFIDRTLPHFT------KDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 851
Query: 167 GLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGD 212
SE G + + L+ + D++V YDGTVRN + +IQF YG D
Sbjct: 852 KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDGMD 896
>B7SNX0_LIRTU (tr|B7SNX0) DNA-directed RNA polymerase (Fragment) OS=Liriodendron
tulipifera GN=rpb1 PE=2 SV=1
Length = 1010
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 98/226 (43%), Gaps = 25/226 (11%)
Query: 4 IFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQL--------------RFI---YNE 46
+ NGFS+G+ D A + I K + +L R + +
Sbjct: 594 LLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIKAAQDKQLEAEPGRTMMESFEN 653
Query: 47 LVAQQLEKHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLY 106
V Q L K D A K +S+S+ L M+ + SK + ++Q +GQQ V G+
Sbjct: 654 RVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQ-NVEGKRI 712
Query: 107 SKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSR 166
G ++ HF D Y G + + GL P E H++ RE ++ ++
Sbjct: 713 PYGFIDRTLPHFT------KDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 766
Query: 167 GLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGD 212
SE G + + L+ + D++V YDGTVRN + +IQF YG D
Sbjct: 767 KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDGMD 811
>B7SNW9_ILLPA (tr|B7SNW9) DNA-directed RNA polymerase (Fragment) OS=Illicium
parviflorum GN=rpb1 PE=2 SV=1
Length = 1013
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 98/226 (43%), Gaps = 25/226 (11%)
Query: 4 IFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQL--------------RFI---YNE 46
+ NGFS+G+ D A + I K + +L R + +
Sbjct: 597 LLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIKAAQEKQLEAEPGRTMMESFEN 656
Query: 47 LVAQQLEKHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLY 106
V Q L K D A K +S+S+ L M+ + SK + ++Q +GQQ V G+
Sbjct: 657 RVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQ-NVEGKRI 715
Query: 107 SKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSR 166
G ++ HF D Y G + + GL P E H++ RE ++ ++
Sbjct: 716 PYGFIDRTLPHFT------KDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 769
Query: 167 GLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGD 212
SE G + + L+ + D++V YDGTVRN + +IQF YG D
Sbjct: 770 KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDGMD 814
>Q1L5X5_ANTMA (tr|Q1L5X5) DNA-directed RNA polymerase (Fragment) OS=Antirrhinum
majus GN=RPD1 PE=2 SV=1
Length = 1112
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 96/194 (49%), Gaps = 30/194 (15%)
Query: 141 FFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNS 200
+ GL+P E +HS++TR+ +S GTL + LM +RD++ YDGTVRN +
Sbjct: 478 YLMGLNPLESFLHSLTTRDSSFSGQADVS--GTLTRKLMFFMRDIITGYDGTVRNSYGSQ 535
Query: 201 IIQFEYGVKAGDKTRY---LFPAGEPVGVLAATSMSNPAYKAV------LDASPSSSCSW 251
I+QF+YG GD + + G PVG LAA ++S AY A+ L+ SP +
Sbjct: 536 IVQFDYGT--GDMSAVNSDVLMGGHPVGSLAACAISEAAYSALDQPVSALEPSPLIA--- 590
Query: 252 ELMKEILLCKVNFRNEPIDRRVILYLNDCDCGRRYCR-----ENAAYIVKNQLRKVSLKD 306
+K++L C V +N + L+L+ RR + E A VK+ + + +
Sbjct: 591 --LKKVLDCGV--KNNTGGKSASLFLS-----RRLGKWVNGFEFGALEVKDHMESLLFSE 641
Query: 307 TAVDFIVEYQQQRK 320
+ + + +R+
Sbjct: 642 VVSEVTISFSTERR 655
>K4CP21_SOLLC (tr|K4CP21) DNA-directed RNA polymerase OS=Solanum lycopersicum
GN=Solyc08g080210.2 PE=3 SV=1
Length = 1206
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 88/310 (28%), Positives = 137/310 (44%), Gaps = 33/310 (10%)
Query: 52 LEKHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQL------FVRGRL 105
+K +DI+ + S + L M+ + SK L K+ Q LG Q F R
Sbjct: 450 FKKVFRDIQNLVYNYASNDNSLLAMLKAGSKGNLLKLVQHNMCLGLQQSLVPVSFRMPRQ 509
Query: 106 YSKGLLEDVASHFKLKCDYD-----GDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREI 160
S + SH ++ + G PSA +++ F GL+P E VHS++TR+
Sbjct: 510 LSCDAWNNHKSHLVIEKPHKVPECPGSYIPSA---VVKSSFLAGLNPLECFVHSLTTRDS 566
Query: 161 MVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFE-YGVKAGDKTRYLFP 219
+S GTL + LM +RD+ V YDGTVRN N I+QF Y + T+
Sbjct: 567 SFSGHADVS--GTLNRKLMFFMRDLYVGYDGTVRNAYGNQIVQFSYYEAEQIASTKVTGE 624
Query: 220 A---------GEPVGVLAATSMSNPAYKAVLDASPSSSCSWEL--MKEILLCKVNFRNEP 268
A G PVG LAA ++S AY A LD S+ S L +K+IL R
Sbjct: 625 ALESHNHAIGGHPVGSLAACAISEAAYCA-LDQPVSALESSPLLNLKKILESGAGSRTG- 682
Query: 269 IDRRVILYLNDCDCGRRYCRENAAYIVKNQLRKVSLKDTAVDFIVEYQQQRKREGSETDA 328
++ ++L+ + E A VK L ++ L + ++ + + ++ S +
Sbjct: 683 -EKTASMFLSKRLGRWAHGFEYGALEVKGHLERLLLSEVVSTVMICFSPETRK--STHNC 739
Query: 329 GLVGHIHLDE 338
V H H+D+
Sbjct: 740 PWVCHFHIDK 749
>Q1L5X6_SOLLC (tr|Q1L5X6) DNA-directed RNA polymerase (Fragment) OS=Solanum
lycopersicum GN=RPD1 PE=2 SV=1
Length = 1138
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 88/310 (28%), Positives = 137/310 (44%), Gaps = 33/310 (10%)
Query: 52 LEKHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQL------FVRGRL 105
+K +DI+ + S + L M+ + SK L K+ Q LG Q F R
Sbjct: 382 FKKVFRDIQNLVYNYASNDNSLLAMLKAGSKGNLLKLVQHNMCLGLQQSLVPVSFRMPRQ 441
Query: 106 YSKGLLEDVASHFKLKCDYD-----GDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREI 160
S + SH ++ + G PSA +++ F GL+P E VHS++TR+
Sbjct: 442 LSCDAWNNHKSHLVIEKPHKVPECPGSYIPSA---VVKSSFLAGLNPLECFVHSLTTRDS 498
Query: 161 MVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFE-YGVKAGDKTRYLFP 219
+S GTL + LM +RD+ V YDGTVRN N I+QF Y + T+
Sbjct: 499 SFSGHADVS--GTLNRKLMFFMRDLYVGYDGTVRNAYGNQIVQFSYYEAEQIASTKVTGE 556
Query: 220 A---------GEPVGVLAATSMSNPAYKAVLDASPSSSCSWEL--MKEILLCKVNFRNEP 268
A G PVG LAA ++S AY A LD S+ S L +K+IL R
Sbjct: 557 ALESHNHAIGGHPVGSLAACAISEAAYCA-LDQPVSALESSPLLNLKKILESGAGSRTG- 614
Query: 269 IDRRVILYLNDCDCGRRYCRENAAYIVKNQLRKVSLKDTAVDFIVEYQQQRKREGSETDA 328
++ ++L+ + E A VK L ++ L + ++ + + ++ S +
Sbjct: 615 -EKTASMFLSKRLGRWAHGFEYGALEVKGHLERLLLSEVVSTVMICFSPETRK--STHNC 671
Query: 329 GLVGHIHLDE 338
V H H+D+
Sbjct: 672 PWVCHFHIDK 681
>B8BAW1_ORYSI (tr|B8BAW1) DNA-directed RNA polymerase OS=Oryza sativa subsp.
indica GN=OsI_27866 PE=2 SV=1
Length = 1449
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 97/221 (43%), Gaps = 25/221 (11%)
Query: 4 IFSNGFSVGLHDFSISGAVKRVTDRNIGK----VSPLLYQ-------------LRFIYNE 46
+ NGFS+G+ D A + I K V L+ Q + +
Sbjct: 645 LLQNGFSIGIGDTIADAATMVKINETISKAKDDVKELIKQAHDKQLEAEPGRTMMESFEN 704
Query: 47 LVAQQLEKHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLY 106
V Q L K D A K +S+S+ L M+ + SK + ++Q +GQQ V G+
Sbjct: 705 RVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQ-NVEGKRI 763
Query: 107 SKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSR 166
G ++ HF D Y G + + GL P E H++ RE ++ ++
Sbjct: 764 PFGFIDRTLPHFT------KDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 817
Query: 167 GLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 207
SE G + + L+ + D++V YDGTVRN + +IQF YG
Sbjct: 818 KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYG 857
>M0SAM7_MUSAM (tr|M0SAM7) DNA-directed RNA polymerase OS=Musa acuminata subsp.
malaccensis PE=3 SV=1
Length = 1408
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 95/221 (42%), Gaps = 25/221 (11%)
Query: 4 IFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIYNE----------------- 46
+ NGFS+G+ D A + I K + +L + E
Sbjct: 610 LLQNGFSMGIGDTIADAATMEKINETISKAKNDVKELIKLAQEKQFEAEPGRTMMESFEN 669
Query: 47 LVAQQLEKHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLY 106
V Q L + D K +S+S+ L M+ + SK + ++Q +GQQ V G+
Sbjct: 670 RVNQVLNRARDDAGSSGQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQ-NVEGKRI 728
Query: 107 SKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSR 166
G ++ HF D Y G + + GL P E H++ RE +V ++
Sbjct: 729 PFGFVDRTLPHFT------KDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLVDTAV 782
Query: 167 GLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 207
SE G + + L+ + D+VV YDGTVRN + +IQF YG
Sbjct: 783 KTSETGYIQRRLVKAMEDIVVTYDGTVRNSLGD-VIQFLYG 822
>J3MQH6_ORYBR (tr|J3MQH6) DNA-directed RNA polymerase OS=Oryza brachyantha
GN=OB08G13550 PE=3 SV=1
Length = 1855
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 97/221 (43%), Gaps = 25/221 (11%)
Query: 4 IFSNGFSVGLHDFSISGAVKRVTDRNI----GKVSPLLYQ-------------LRFIYNE 46
+ NGFS+G+ D A + I +V L+ Q + +
Sbjct: 675 LLQNGFSIGIGDTIADAATMEKINETISTAKNEVKELIKQAHDKHLEAEPGRTMMESFEN 734
Query: 47 LVAQQLEKHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLY 106
V Q L K D A K +S+S+ L M+ + SK + ++Q +GQQ V G+
Sbjct: 735 RVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQ-NVEGKRI 793
Query: 107 SKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSR 166
G ++ HF D Y G + + GL P E H++ RE ++ ++
Sbjct: 794 PFGFIDRTLPHFT------KDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 847
Query: 167 GLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 207
SE G + + L+ + D++V YDGTVRN + +IQF YG
Sbjct: 848 KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYG 887
>I1I1H0_BRADI (tr|I1I1H0) DNA-directed RNA polymerase OS=Brachypodium distachyon
GN=BRADI3G16660 PE=3 SV=1
Length = 1862
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 101/226 (44%), Gaps = 25/226 (11%)
Query: 4 IFSNGFSVGLHDFSISGAVKRVTDRNIGK----VSPLLYQ-------------LRFIYNE 46
+ NGFS+G+ D + + I K V+ L+ Q + +
Sbjct: 676 LLQNGFSIGIGDTIADASTMEKINETISKAKSEVTELIKQAQDKLLEPEPGRTMMESFEN 735
Query: 47 LVAQQLEKHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLY 106
V Q L K D A K +S+S+ L M+ + SK + ++Q +GQQ V G+
Sbjct: 736 RVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQ-NVEGKRI 794
Query: 107 SKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSR 166
G ++ HF K DY + G + + GL P E H++ RE ++ ++
Sbjct: 795 PFGFVDRTLPHFT-KNDYGPESR-----GFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 848
Query: 167 GLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGD 212
SE G + + L+ + D++V YDGTVRN + +IQF YG D
Sbjct: 849 KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDGMD 893
>B7SNW7_CERDE (tr|B7SNW7) DNA-directed RNA polymerase (Fragment) OS=Ceratophyllum
demersum GN=rpb1 PE=2 SV=1
Length = 1010
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 98/226 (43%), Gaps = 25/226 (11%)
Query: 4 IFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQL--------------RFI---YNE 46
+ NGFS+G+ D + + I K + +L R + +
Sbjct: 594 LLQNGFSIGIGDTIADASTMEKINETISKAKNEVKELIKAAQEKQLEAEPGRTMMESFEN 653
Query: 47 LVAQQLEKHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLY 106
V Q L K D A K +S+S+ L M+ + SK + ++Q +GQQ V G+
Sbjct: 654 RVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQ-NVEGKRI 712
Query: 107 SKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSR 166
G ++ HF D Y G + + GL P E H++ RE ++ ++
Sbjct: 713 PYGFIDRTLPHFT------KDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 766
Query: 167 GLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGD 212
SE G + + L+ + D++V YDGTVRN + +IQF YG D
Sbjct: 767 KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDGMD 811
>Q71ET6_MAGSO (tr|Q71ET6) DNA-directed RNA polymerase (Fragment) OS=Magnolia
soulangeana GN=RPB1 PE=2 SV=1
Length = 1010
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 98/226 (43%), Gaps = 25/226 (11%)
Query: 4 IFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQL--------------RFI---YNE 46
+ NGFS+G+ D + + I K + +L R + +
Sbjct: 594 LLQNGFSIGIGDTIADASTMEKINETISKAKNEVKELIKAAQEKQLEAEPGRTMMESFEN 653
Query: 47 LVAQQLEKHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLY 106
V Q L K D A K +S+S+ L M+ + SK + ++Q +GQQ V G+
Sbjct: 654 RVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQ-NVEGKRI 712
Query: 107 SKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSR 166
G ++ HF D Y G + + GL P E H++ RE ++ ++
Sbjct: 713 PYGFIDRTLPHFT------KDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 766
Query: 167 GLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGD 212
SE G + + L+ + D++V YDGTVRN + +IQF YG D
Sbjct: 767 KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDGMD 811
>B7SNW6_BETVU (tr|B7SNW6) DNA-directed RNA polymerase (Fragment) OS=Beta vulgaris
GN=rpb1 PE=2 SV=1
Length = 1012
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 98/226 (43%), Gaps = 25/226 (11%)
Query: 4 IFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQL--------------RFI---YNE 46
+ NGFS+G+ D + + I K + +L R + +
Sbjct: 596 LLQNGFSIGIGDTIADASTMEKINETISKAKNEVKELIKAAQEKQLEAEPGRTMMESFEN 655
Query: 47 LVAQQLEKHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLY 106
V Q L K D A K +S+S+ L M+ + SK + ++Q +GQQ V G+
Sbjct: 656 RVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQ-NVEGKRI 714
Query: 107 SKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSR 166
G ++ HF D Y G + + GL P E H++ RE ++ ++
Sbjct: 715 PYGFIDRTLPHFT------KDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 768
Query: 167 GLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGD 212
SE G + + L+ + D++V YDGTVRN + +IQF YG D
Sbjct: 769 KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDGMD 813
>B7SNX4_PEA (tr|B7SNX4) DNA-directed RNA polymerase (Fragment) OS=Pisum sativum
GN=rpb1 PE=2 SV=1
Length = 1010
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 98/226 (43%), Gaps = 25/226 (11%)
Query: 4 IFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQL--------------RFI---YNE 46
+ N FS+G+ D + ++ I + + QL R + +
Sbjct: 594 LLQNAFSIGIGDTIADASTMETINQTISQAKDKVKQLIREAQEKKLEAEPGRTMMDSFEN 653
Query: 47 LVAQQLEKHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLY 106
V Q L K D A K +S+S+ L M+ + SK + ++Q +GQQ V G+
Sbjct: 654 RVNQTLNKARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQ-NVEGKRI 712
Query: 107 SKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSR 166
G ++ HF D Y G + + GL P E H++ RE ++ ++
Sbjct: 713 PFGFIDRTLPHFT------KDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 766
Query: 167 GLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGD 212
SE G + + L+ + D++V YDGTVRN + +IQF YG D
Sbjct: 767 KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDGMD 811
>I1QFS2_ORYGL (tr|I1QFS2) DNA-directed RNA polymerase (Fragment) OS=Oryza
glaberrima PE=3 SV=1
Length = 1820
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 98/226 (43%), Gaps = 25/226 (11%)
Query: 4 IFSNGFSVGLHDFSISGAVKRVTDRNIGK----VSPLLYQ-------------LRFIYNE 46
+ NGFS+G+ D A + I K V L+ Q + +
Sbjct: 674 LLQNGFSIGIGDTIADAATMVKINETISKAKDDVKELIKQAHDKQLEAEPGRTMMESFEN 733
Query: 47 LVAQQLEKHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLY 106
V Q L K D A K +S+S+ L M+ + SK + ++Q +GQQ V G+
Sbjct: 734 RVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQ-NVEGKRI 792
Query: 107 SKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSR 166
G ++ HF D Y G + + GL P E H++ RE ++ ++
Sbjct: 793 PFGFIDRTLPHFT------KDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 846
Query: 167 GLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGD 212
SE G + + L+ + D++V YDGTVRN + +IQF YG D
Sbjct: 847 KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDGMD 891
>B9SXC0_RICCO (tr|B9SXC0) DNA-directed RNA polymerase OS=Ricinus communis
GN=RCOM_0782880 PE=3 SV=1
Length = 1855
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 95/227 (41%), Gaps = 27/227 (11%)
Query: 4 IFSNGFSVGLHDFSISGAVKRVTDRNIGKVS------------------PLLYQLRFIYN 45
+ NGFS+G+ D A + I P + N
Sbjct: 675 LLQNGFSIGIGDTIADAATMEKINETISNAKNAVKELIRKAQNKELEPKPGRTMMESFEN 734
Query: 46 ELVAQQLEKHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRL 105
E V Q L + D A K +S+S+ L M+ + SK + ++Q +GQQ V G+
Sbjct: 735 E-VNQVLNRARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQ-NVEGKR 792
Query: 106 YSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSS 165
G ++ HF D Y G + + GL P E H++ RE ++ ++
Sbjct: 793 IPYGFIDRTLPHFT------KDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTA 846
Query: 166 RGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGD 212
SE G + + L+ + D++V YDGTVRN + +IQF YG D
Sbjct: 847 VKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDGMD 892
>D8PLU0_SCHCM (tr|D8PLU0) DNA-directed RNA polymerase OS=Schizophyllum commune
(strain H4-8 / FGSC 9210) GN=SCHCODRAFT_81059 PE=3 SV=1
Length = 1750
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 98/222 (44%), Gaps = 27/222 (12%)
Query: 4 IFSNGFSVGLHDFSISGA-----VKRVTDRNIGKVSPLL-------------YQLRFIYN 45
+F NGFS+G+ D +I+G + + D+ KV L +R +
Sbjct: 660 LFHNGFSIGIGD-TIAGPDVMAKITKTIDQQKEKVKELTADAYWDLLKPMPGMTIRETFE 718
Query: 46 ELVAQQLEKHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRL 105
V +L K D A + + + M+ + SK + ++Q +GQQ V G+
Sbjct: 719 SKVNHELNKARDDAGKDAQDGLKDDNNVKQMVVAGSKGSFINISQMSVCVGQQ-SVEGKR 777
Query: 106 YSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSS 165
G HF D Y G + + GL P E H++S RE ++ ++
Sbjct: 778 IPFGFRHRTLPHFT------KDDYSPESRGFVENSYLRGLTPQEFFFHAMSGREGLIDTA 831
Query: 166 RGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 207
+E G + + L+ L DV+VCYDGTVRN + ++QF YG
Sbjct: 832 VKTAETGYIQRRLVKALEDVMVCYDGTVRNSLGD-LVQFIYG 872
>L0HG61_METFS (tr|L0HG61) DNA-directed RNA polymerase OS=Methanoregula formicica
(strain DSM 22288 / NBRC 105244 / SMSP) GN=Metfor_1029
PE=3 SV=1
Length = 879
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 80/151 (52%), Gaps = 10/151 (6%)
Query: 76 MIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYG 135
M S ++ ++ +TQ G +GQQ VRG +G + HFK K D D + G
Sbjct: 727 MAVSGARGSMLNLTQMAGCIGQQ-SVRGERIVRGYDDRTLPHFK-KGDRGSDAH-----G 779
Query: 136 LLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRN 195
++ + GL+P E H+I RE +V ++ S+ G L + ++ L+D+ V YDGTVR+
Sbjct: 780 FIQHSYKGGLNPTEFFFHAIGGREGLVDTAVRTSQSGYLQRRMINALQDLKVAYDGTVRS 839
Query: 196 VCSNSIIQFEYGVKAGDKTRYLFPAGEPVGV 226
IIQFEYG D T+ F G+PV V
Sbjct: 840 T-GGKIIQFEYGEDGTDPTKSAF--GDPVDV 867
>C5YGY9_SORBI (tr|C5YGY9) DNA-directed RNA polymerase OS=Sorghum bicolor
GN=Sb07g003680 PE=3 SV=1
Length = 1857
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 99/226 (43%), Gaps = 25/226 (11%)
Query: 4 IFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQL--------------RFI---YNE 46
+ NGFS+G+ D + + + I K + +L R + +
Sbjct: 674 LLQNGFSIGIGDTIADASTMQTINDTICKAKDEVKELIKKAHEKQLEAEPGRTMMESFEN 733
Query: 47 LVAQQLEKHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLY 106
V Q L K D A K +S+S+ L M+ + SK + ++Q +GQQ V G+
Sbjct: 734 RVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQ-NVEGKRI 792
Query: 107 SKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSR 166
G ++ HF D Y G + + GL P E H++ RE ++ ++
Sbjct: 793 PFGFIDRTLPHFT------KDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 846
Query: 167 GLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGD 212
SE G + + L+ + D++V YDGTVRN + +IQF YG D
Sbjct: 847 KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDGMD 891
>L9XT18_9EURY (tr|L9XT18) DNA-directed RNA polymerase OS=Natrinema versiforme JCM
10478 GN=C489_15961 PE=3 SV=1
Length = 975
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 109/224 (48%), Gaps = 25/224 (11%)
Query: 1 MESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIY--NELVAQQLEKHMQD 58
M +I GFS+G+ D +I G + D I + + +L Y NEL + +
Sbjct: 692 MRAIMHFGFSIGIDDETIPGEAQARIDETIADANDRVEELIEAYENNELESLPGRTIDET 751
Query: 59 IELPAIKFVSKS----SRLGD-----------MIDSKSKSALDKVTQQIGFLGQQLFVRG 103
+E+ ++ +S++ + D M +S ++ ++ +TQ G +GQQ VRG
Sbjct: 752 LEMKIMQSLSRARDNAGNIADEHFQDDNPAVVMANSGARGSMLNLTQMAGAVGQQA-VRG 810
Query: 104 RLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVR 163
++G + SH Y+ + + +G + + GL P E H++ RE +V
Sbjct: 811 ERINRGYEDRTLSH------YEPNDLSAEAHGFVENSYTSGLTPREFFFHAMGGREGLVD 864
Query: 164 SSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 207
++ S+ G L + L+ L ++ YDGTVR+ S++IIQFE+G
Sbjct: 865 TAVRTSKSGYLQRRLINALHELETQYDGTVRD-SSDTIIQFEFG 907
>K3YFU7_SETIT (tr|K3YFU7) DNA-directed RNA polymerase OS=Setaria italica
GN=Si013115m.g PE=3 SV=1
Length = 1852
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 98/226 (43%), Gaps = 25/226 (11%)
Query: 4 IFSNGFSVGLHDFSISGAVKRVTDRNIGK----VSPLLYQLRFIYNEL------------ 47
+ GFS+G+ D A + I K V L+ Q + + E
Sbjct: 675 LLQQGFSIGIGDTIADAATMEKINETISKAKNEVKELIKQAQDKHLEAEPGRTMMESFEN 734
Query: 48 -VAQQLEKHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLY 106
V Q L K D A K +S+S+ L M+ + SK + ++Q +GQQ V G+
Sbjct: 735 RVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQ-NVEGKRI 793
Query: 107 SKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSR 166
G ++ HF D Y G + + GL P E H++ RE ++ ++
Sbjct: 794 PFGFIDRTLPHFT------KDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 847
Query: 167 GLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGD 212
SE G + + L+ + D++V YDGTVRN + +IQF YG D
Sbjct: 848 KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDGMD 892
>L0JQ96_NATP1 (tr|L0JQ96) DNA-directed RNA polymerase OS=Natrinema pellirubrum
(strain DSM 15624 / JCM 10476 / NCIMB 786) GN=C488_17593
PE=3 SV=1
Length = 975
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 109/224 (48%), Gaps = 25/224 (11%)
Query: 1 MESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIY--NELVAQQLEKHMQD 58
M +I GFS+G+ D +I G + D I + + +L Y NEL + +
Sbjct: 692 MRAIMHFGFSIGIDDETIPGEAQSRIDETIADANDRVEELIEAYENNELESLPGRTIDET 751
Query: 59 IELPAIKFVSKS----SRLGD-----------MIDSKSKSALDKVTQQIGFLGQQLFVRG 103
+E+ ++ +S++ + D M +S ++ ++ +TQ G +GQQ VRG
Sbjct: 752 LEMKIMQTLSRARDNAGNIADEHFQDDNPAVVMANSGARGSMLNLTQMAGAVGQQA-VRG 810
Query: 104 RLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVR 163
++G + SH Y+ + + +G + + GL P E H++ RE +V
Sbjct: 811 ERINRGYEDRTLSH------YEPNDLSAEAHGFVENSYTSGLTPREFFFHAMGGREGLVD 864
Query: 164 SSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 207
++ S+ G L + L+ L ++ YDGTVR+ S++I+QFE+G
Sbjct: 865 TAVRTSKSGYLQRRLINALSELETQYDGTVRD-TSDTIVQFEFG 907
>L9ZBF6_9EURY (tr|L9ZBF6) DNA-directed RNA polymerase OS=Natrinema pallidum DSM
3751 GN=C487_02106 PE=3 SV=1
Length = 975
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 109/224 (48%), Gaps = 25/224 (11%)
Query: 1 MESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIY--NELVAQQLEKHMQD 58
M +I GFS+G+ D +I G + D I + + +L Y NEL + +
Sbjct: 692 MRAIMHFGFSIGIDDETIPGEAQSRIDETIADANDRVEELIEAYENNELESLPGRTIDET 751
Query: 59 IELPAIKFVSKS----SRLGD-----------MIDSKSKSALDKVTQQIGFLGQQLFVRG 103
+E+ ++ +S++ + D M +S ++ ++ +TQ G +GQQ VRG
Sbjct: 752 LEMKIMQTLSRARDNAGNIADEHFQDDNPAVVMANSGARGSMLNLTQMAGAVGQQA-VRG 810
Query: 104 RLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVR 163
++G + SH Y+ + + +G + + GL P E H++ RE +V
Sbjct: 811 ERINRGYEDRTLSH------YEPNDLSAEAHGFVENSYTSGLTPREFFFHAMGGREGLVD 864
Query: 164 SSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 207
++ S+ G L + L+ L ++ YDGTVR+ S++I+QFE+G
Sbjct: 865 TAVRTSKSGYLQRRLINALSELETQYDGTVRD-TSDTIVQFEFG 907
>B7SNX2_PAPOR (tr|B7SNX2) DNA-directed RNA polymerase (Fragment) OS=Papaver
orientale GN=rpb1 PE=2 SV=1
Length = 1010
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 96/226 (42%), Gaps = 25/226 (11%)
Query: 4 IFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIYNE----------------- 46
+ NGFS+G+ D + + I K + L + E
Sbjct: 594 LLQNGFSIGIGDTIADASTMEKINDTISKAKNEVKDLIRMAQEKSLEPEPGRTMMESFEN 653
Query: 47 LVAQQLEKHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLY 106
V Q L K D A K +S+S+ L M+ + SK + ++Q +GQQ V G+
Sbjct: 654 RVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQ-NVEGKRI 712
Query: 107 SKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSR 166
G ++ HF D Y G + + GL P E H++ RE ++ ++
Sbjct: 713 PYGFIDRTLPHFT------KDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 766
Query: 167 GLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGD 212
SE G + + L+ + D++V YDGTVRN + +IQF YG D
Sbjct: 767 KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDGMD 811
>I7AWA0_9ASCO (tr|I7AWA0) DNA-directed RNA polymerase (Fragment) OS=Dipodascus
albidus PE=3 SV=1
Length = 870
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 101/229 (44%), Gaps = 25/229 (10%)
Query: 4 IFSNGFSVGLHDFSISGAVKRVTDRNIG----KVSPLL-------------YQLRFIYNE 46
+ NGFS+G+ D GA R I KV ++ LR + +
Sbjct: 468 LLHNGFSIGIGDTIADGATMRHITETISEAKSKVQEIINAAQLNKLEREQGMTLRESFEQ 527
Query: 47 LVAQQLEKHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLY 106
V++ L + + A K + + + + M+ S SK + ++Q +GQQ+ V G+
Sbjct: 528 NVSRTLNQARDNAGKSAEKSLKELNNVKQMVISGSKGSFINISQMSACVGQQI-VEGKRI 586
Query: 107 SKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSR 166
G + HF D Y G + + GL P E H+++ RE ++ ++
Sbjct: 587 PYGFADRTLPHFT------KDDYSPESKGFIENSYLRGLTPQEFFFHAMAGREGLIDTAV 640
Query: 167 GLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGDKTR 215
+E G + + L+ L DV+V YDGTVRN + I+QF YG D +
Sbjct: 641 KTAETGYIQRRLVKALEDVMVQYDGTVRNSLGD-ILQFVYGEDGLDSVK 688
>K7LNL8_SOYBN (tr|K7LNL8) DNA-directed RNA polymerase OS=Glycine max PE=3 SV=1
Length = 1827
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 97/226 (42%), Gaps = 25/226 (11%)
Query: 4 IFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQL--------------RFIYNEL-- 47
+ N FS+G+ D + ++ I + QL R + +
Sbjct: 675 LLQNAFSIGIGDTIADASTMETINQTISAAKEKVKQLIREAQEKKLEAEPGRTMMDSFEN 734
Query: 48 -VAQQLEKHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLY 106
V Q L + D A K +S+S+ L M+ + SK + ++Q +GQQ V G+
Sbjct: 735 RVNQTLNRARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQ-NVEGKRI 793
Query: 107 SKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSR 166
G ++ HF D Y G + + GL P E H++ RE ++ ++
Sbjct: 794 PYGFIDRTLPHFT------KDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 847
Query: 167 GLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGD 212
SE G + + L+ + D++V YDGTVRN + +IQF YG D
Sbjct: 848 KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDGMD 892
>K7TLU2_MAIZE (tr|K7TLU2) DNA-directed RNA polymerase OS=Zea mays
GN=ZEAMMB73_239003 PE=3 SV=1
Length = 1850
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 97/226 (42%), Gaps = 25/226 (11%)
Query: 4 IFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQL--------------RFI---YNE 46
+ NGFS+G+ D + + I K + +L R + +
Sbjct: 674 LLQNGFSIGIGDTIADASTMETINDTISKAKNAVKELIKKAHEKQLEAEPGRTMMESFEN 733
Query: 47 LVAQQLEKHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLY 106
V Q L K D A +S+S+ L M+ + SK + ++Q +GQQ V G+
Sbjct: 734 RVNQVLNKARDDAGSSAQNSLSESNNLKAMVTAGSKGSFINISQMTACVGQQ-NVEGKRI 792
Query: 107 SKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSR 166
G ++ HF D Y G + + GL P E H++ RE ++ ++
Sbjct: 793 PFGFIDRTLPHFT------KDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 846
Query: 167 GLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGD 212
SE G + + L+ + D++V YDGTVRN + +IQF YG D
Sbjct: 847 KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDGMD 891
>I1LI55_SOYBN (tr|I1LI55) DNA-directed RNA polymerase OS=Glycine max PE=3 SV=2
Length = 1803
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 97/226 (42%), Gaps = 25/226 (11%)
Query: 4 IFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQL--------------RFIYNEL-- 47
+ N FS+G+ D + ++ I + QL R + +
Sbjct: 675 LLQNAFSIGIGDTIADASTMETINQTISAAKEKVKQLIREAQEKKLEAEPGRTMMDSFEN 734
Query: 48 -VAQQLEKHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLY 106
V Q L + D A K +S+S+ L M+ + SK + ++Q +GQQ V G+
Sbjct: 735 RVNQTLNRARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQ-NVEGKRI 793
Query: 107 SKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSR 166
G ++ HF D Y G + + GL P E H++ RE ++ ++
Sbjct: 794 PYGFIDRTLPHFT------KDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 847
Query: 167 GLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGD 212
SE G + + L+ + D++V YDGTVRN + +IQF YG D
Sbjct: 848 KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDGMD 892
>Q71ET7_MAIZE (tr|Q71ET7) DNA-directed RNA polymerase (Fragment) OS=Zea mays
GN=RPB1 PE=2 SV=1
Length = 1009
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 97/226 (42%), Gaps = 25/226 (11%)
Query: 4 IFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQL--------------RFI---YNE 46
+ NGFS+G+ D + + I K + +L R + +
Sbjct: 593 LLQNGFSIGIGDTIADASTMETINDTISKAKNAVKELIKKAHEKQLEAEPGRTMMESFEN 652
Query: 47 LVAQQLEKHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLY 106
V Q L K D A +S+S+ L M+ + SK + ++Q +GQQ V G+
Sbjct: 653 RVNQVLNKARDDAGSSAQNSLSESNNLKAMVTAGSKGSFINISQMTACVGQQ-NVEGKRI 711
Query: 107 SKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSR 166
G ++ HF D Y G + + GL P E H++ RE ++ ++
Sbjct: 712 PFGFIDRTLPHFT------KDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 765
Query: 167 GLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGD 212
SE G + + L+ + D++V YDGTVRN + +IQF YG D
Sbjct: 766 KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDGMD 810
>M0B9L1_9EURY (tr|M0B9L1) DNA-directed RNA polymerase OS=Natrialba chahannaoensis
JCM 10990 GN=C482_00990 PE=3 SV=1
Length = 976
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 109/224 (48%), Gaps = 25/224 (11%)
Query: 1 MESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIY--NELVAQQLEKHMQD 58
M +I GFS+G+ D +I G + D I + + +L Y NEL + +
Sbjct: 692 MRAIMHFGFSIGIDDETIPGEAQSRIDETIEDANDRVEELIEAYENNELESLPGRTLDET 751
Query: 59 IELPAIKFVSKS----SRLGD-----------MIDSKSKSALDKVTQQIGFLGQQLFVRG 103
+E+ ++ +S++ + D M +S ++ ++ +TQ G +GQQ VRG
Sbjct: 752 LEMKIMQTLSRARDNAGNIADEHFDNENPAVVMANSGARGSMLNLTQMAGAVGQQA-VRG 810
Query: 104 RLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVR 163
++G + SH+K + + +G + + GL P E H++ RE +V
Sbjct: 811 ERINRGYEDRTLSHYK------PNDLSAEAHGFVENSYTSGLTPREFFFHAMGGREGLVD 864
Query: 164 SSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 207
++ S+ G L + L+ L ++ YDGTVR+ S++I+QFE+G
Sbjct: 865 TAVRTSKSGYLQRRLINALSELEAQYDGTVRD-TSDTIVQFEFG 907
>I7AW10_9ASCO (tr|I7AW10) DNA-directed RNA polymerase (Fragment)
OS=Saccharomycopsis capsularis PE=3 SV=1
Length = 871
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 112/244 (45%), Gaps = 28/244 (11%)
Query: 4 IFSNGFSVGLHD------------FSISGAVKRVT----DRNIGKVSPLL-YQLRFIYNE 46
+ NGFS+G+ D +I+ A ++V D + ++ P LR +
Sbjct: 470 LLHNGFSIGIGDTIADKTTMTRITTTINEAKQKVQEVILDAHANRLQPEPGMTLREAFEA 529
Query: 47 LVAQQLEKHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLY 106
VAQ L K D+ + K + S+ + M+ S SK + ++Q +GQQ+ V G+
Sbjct: 530 NVAQLLNKARDDVGKYSEKSLKDSNNVKQMVISGSKGSFINISQMSACVGQQM-VEGKRI 588
Query: 107 SKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSR 166
G + HF D + G + + GL P E H+++ RE ++ ++
Sbjct: 589 PFGFADRTLPHFT------KDDFSPESKGFIENSYLRGLTPQEFFFHAMAGREGLIDTAV 642
Query: 167 GLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGDKTRYLFPAGEPVGV 226
+E G + + L+ L D+ V YDGTVRN + +++QF YG D T+ +P+
Sbjct: 643 KTAETGYIQRRLVKALEDITVHYDGTVRN-STGTVLQFIYGEDGLDGTQV---ESQPLDS 698
Query: 227 LAAT 230
L A+
Sbjct: 699 LPAS 702
>L9ZV76_9EURY (tr|L9ZV76) DNA-directed RNA polymerase OS=Natrialba hulunbeirensis
JCM 10989 GN=C483_12068 PE=3 SV=1
Length = 976
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 109/224 (48%), Gaps = 25/224 (11%)
Query: 1 MESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIY--NELVAQQLEKHMQD 58
M +I GFS+G+ D +I G + D I + + +L Y NEL + +
Sbjct: 692 MRAIMHFGFSIGIDDETIPGEAQSRIDETIEDANDRVEELIEAYENNELESLPGRTLDET 751
Query: 59 IELPAIKFVSKS----SRLGD-----------MIDSKSKSALDKVTQQIGFLGQQLFVRG 103
+E+ ++ +S++ + D M +S ++ ++ +TQ G +GQQ VRG
Sbjct: 752 LEMKIMQTLSRARDNAGNIADEHFDDENPAVVMANSGARGSMLNLTQMAGAVGQQA-VRG 810
Query: 104 RLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVR 163
++G + SH+K + + +G + + GL P E H++ RE +V
Sbjct: 811 ERINRGYEDRTLSHYK------PNDLSAEAHGFVENSYTSGLTPREFFFHAMGGREGLVD 864
Query: 164 SSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 207
++ S+ G L + L+ L ++ YDGTVR+ S++I+QFE+G
Sbjct: 865 TAVRTSKSGYLQRRLINALSELEAQYDGTVRD-TSDTIVQFEFG 907
>D3SW60_NATMM (tr|D3SW60) DNA-directed RNA polymerase OS=Natrialba magadii
(strain ATCC 43099 / DSM 3394 / NCIMB 2190 / MS3)
GN=Nmag_2152 PE=3 SV=1
Length = 976
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 109/224 (48%), Gaps = 25/224 (11%)
Query: 1 MESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIY--NELVAQQLEKHMQD 58
M +I GFS+G+ D +I G + D I + + +L Y NEL + +
Sbjct: 692 MRAIMHFGFSIGIDDETIPGEAQSRIDETIEDANDRVEELIEAYENNELESLPGRTLDET 751
Query: 59 IELPAIKFVSKS----SRLGD-----------MIDSKSKSALDKVTQQIGFLGQQLFVRG 103
+E+ ++ +S++ + D M +S ++ ++ +TQ G +GQQ VRG
Sbjct: 752 LEMKIMQTLSRARDNAGNIADEHFDDENPAVVMANSGARGSMLNLTQMAGAVGQQA-VRG 810
Query: 104 RLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVR 163
++G + SH+K + + +G + + GL P E H++ RE +V
Sbjct: 811 ERINRGYEDRTLSHYK------PNDLSAEAHGFVENSYTSGLTPREFFFHAMGGREGLVD 864
Query: 164 SSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 207
++ S+ G L + L+ L ++ YDGTVR+ S++I+QFE+G
Sbjct: 865 TAVRTSKSGYLQRRLINALSELEAQYDGTVRD-TSDTIVQFEFG 907
>G4IAE7_9EURY (tr|G4IAE7) DNA-directed RNA polymerase OS=Halobacterium sp. DL1
GN=HalDL1DRAFT_0137 PE=3 SV=1
Length = 964
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 106/224 (47%), Gaps = 25/224 (11%)
Query: 1 MESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQD-- 58
M SI GFS+G+ D ++S + + D I + +L Y + L D
Sbjct: 686 MRSIMHFGFSIGIDDETVSESARERIDEAIESAYDRVQELIETYENGDLESLPGRTVDET 745
Query: 59 IELPAIKFVSKS-SRLGD--------------MIDSKSKSALDKVTQQIGFLGQQLFVRG 103
+E+ ++ + K+ GD M +S ++ ++ +TQ G +GQQ VRG
Sbjct: 746 LEMKIMQTLGKARDSAGDVAEENFAQDNPAVVMANSGARGSMLNLTQMAGCVGQQA-VRG 804
Query: 104 RLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVR 163
++G + SHF + SA +G + + GL P E H++ RE +V
Sbjct: 805 ERINRGYEDRTLSHFA------PNDLSSAAHGFVENSYTSGLTPREFFFHAMGGREGLVD 858
Query: 164 SSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 207
++ S+ G L + L+ L ++ YDGTVR+ S++I+QFE+G
Sbjct: 859 TAVRTSKSGYLQRRLINALSELETQYDGTVRD-TSDTIVQFEFG 901
>Q71EU0_CYCRE (tr|Q71EU0) DNA-directed RNA polymerase (Fragment) OS=Cycas
revoluta GN=RPB1 PE=2 SV=1
Length = 1013
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 94/226 (41%), Gaps = 25/226 (11%)
Query: 4 IFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFI-----------------YNE 46
+ GFS+G+ D A + I K + QL + +
Sbjct: 597 LLQQGFSIGIGDTIADAATMETINETISKAKAEVNQLIQLAHQKALEAEPGRTMMESFEN 656
Query: 47 LVAQQLEKHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLY 106
V Q L K D A K +S+S+ L M+ + SK + ++Q +GQQ V G+
Sbjct: 657 RVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQ-NVEGKRI 715
Query: 107 SKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSR 166
G HF D Y G + + GL P E H++ RE ++ ++
Sbjct: 716 PFGFFGRSLPHFTR------DDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 769
Query: 167 GLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGD 212
SE G + + L+ + D++V YDGTVRN + +IQF YG D
Sbjct: 770 KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDGMD 814
>M0CGM0_9EURY (tr|M0CGM0) DNA-directed RNA polymerase OS=Halosimplex carlsbadense
2-9-1 GN=C475_18023 PE=3 SV=1
Length = 1004
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 105/224 (46%), Gaps = 25/224 (11%)
Query: 1 MESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQD-- 58
M SI GFS+ + D SI G + D I + +L Y + L D
Sbjct: 723 MRSIMHFGFSISIDDESIPGEAEGQIDEAIDDAYSRVQKLIETYEAGELESLPGRSVDET 782
Query: 59 IELPAIKFVSKS---------SRLGD------MIDSKSKSALDKVTQQIGFLGQQLFVRG 103
+E+ + +SK+ GD M DS ++ ++ +TQ G +GQQ VRG
Sbjct: 783 LEMKIMSTLSKARDTAGDIAEDHFGDANPAVVMADSGARGSMLNLTQMAGCVGQQA-VRG 841
Query: 104 RLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVR 163
++G + SH+K + + +G + + GL+P E H++ RE +V
Sbjct: 842 ERINRGYEDRTLSHYK------PNDLSAEAHGFVEHSYRSGLEPREFFFHAMGGREGLVD 895
Query: 164 SSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 207
++ S+ G L + L+ L ++ YDGTVR+ S++I+QFE+G
Sbjct: 896 TAVRTSKSGYLQRRLINALSELETQYDGTVRDT-SDTIVQFEFG 938
>J4C946_THEOR (tr|J4C946) DNA-directed RNA polymerase OS=Theileria orientalis
strain Shintoku GN=TOT_040000937 PE=3 SV=1
Length = 1643
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 67/132 (50%), Gaps = 8/132 (6%)
Query: 76 MIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYG 135
M +S SK AL + Q + +GQQ V G+ G +E HF + C + G
Sbjct: 880 MFNSGSKGALINIAQMVACVGQQ-NVSGQRIQNGFIERTLPHFPMGCK------DAKSRG 932
Query: 136 LLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRN 195
+ FF GL+P E H++S RE ++ ++ SE G + + LM + D+ +CYD +VR
Sbjct: 933 FVANSFFTGLEPEEFFFHTMSGREGLIDTAVKTSETGYMQRRLMKFMEDLAICYDHSVR- 991
Query: 196 VCSNSIIQFEYG 207
++QF YG
Sbjct: 992 TGDGQVVQFLYG 1003
>L9WAW0_9EURY (tr|L9WAW0) DNA-directed RNA polymerase OS=Natronorubrum
sulfidifaciens JCM 14089 GN=C495_05943 PE=3 SV=1
Length = 973
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 103/225 (45%), Gaps = 27/225 (12%)
Query: 1 MESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQDIE 60
M +I GFS+G+ D +I G + D I + + +L Y + L D E
Sbjct: 690 MRAIMHFGFSIGIDDETIPGEAQARIDETIDDANDRVEELIEAYERGELESLPGRTLD-E 748
Query: 61 LPAIKFVSKSSRLGD------------------MIDSKSKSALDKVTQQIGFLGQQLFVR 102
+K + SR D M +S ++ ++ +TQ G +GQQ VR
Sbjct: 749 TLEMKIMQTLSRARDNAGNIADEHFEDDNPAVVMANSGARGSMLNLTQMAGAVGQQA-VR 807
Query: 103 GRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMV 162
G ++G + SH Y+ + + +G + + GL P E H++ RE +V
Sbjct: 808 GERINRGYEDRTLSH------YEPNDLSAEAHGFVENSYTSGLTPREFFFHAMGGREGLV 861
Query: 163 RSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 207
++ S+ G L + L+ L ++ YDGTVR+ S++I+QFE+G
Sbjct: 862 DTAVRTSKSGYLQRRLINALSELETQYDGTVRD-TSDTIVQFEFG 905
>C1GX38_PARBA (tr|C1GX38) DNA-directed RNA polymerase OS=Paracoccidioides
brasiliensis (strain ATCC MYA-826 / Pb01) GN=PAAG_03412
PE=3 SV=1
Length = 1425
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 70/132 (53%), Gaps = 8/132 (6%)
Query: 76 MIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYG 135
M S SK + V Q + +GQQ+ + G+ G + HF P A+ G
Sbjct: 762 MATSGSKGSNINVAQMVALVGQQI-IGGQRVQDGFQDRTLPHFPKHARQ-----PPAK-G 814
Query: 136 LLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRN 195
++ FF GL P E L H+IS RE +V ++ +E G + + LM L D+ YDGTVRN
Sbjct: 815 FVQNSFFSGLSPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSTRYDGTVRN 874
Query: 196 VCSNSIIQFEYG 207
S+SI+QF+YG
Sbjct: 875 -SSSSIVQFQYG 885
>R4W721_9EURY (tr|R4W721) DNA-directed RNA polymerase subunit A OS=Salinarchaeum
sp. Harcht-Bsk1 GN=L593_13540 PE=4 SV=1
Length = 974
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 105/224 (46%), Gaps = 25/224 (11%)
Query: 1 MESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQD-- 58
M +I GFS+G+ D +IS + D I + +L Y + L D
Sbjct: 697 MRTIMHFGFSIGIDDETISTEAQERIDETITDAYDRVDELIETYRAGELESLPGRTVDET 756
Query: 59 IELPAIKFVSKS-SRLGD--------------MIDSKSKSALDKVTQQIGFLGQQLFVRG 103
+E+ ++ + K+ GD M +S ++ ++ +TQ G +GQQ VRG
Sbjct: 757 LEMRIMQTLGKARDNAGDIAEENFDDENPAVVMAESGARGSMLNLTQMAGCVGQQA-VRG 815
Query: 104 RLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVR 163
++G SH YD D + +G + + GL+P E H++ RE +V
Sbjct: 816 ERINRGYEGRTLSH------YDADDLSADAHGFVEHSYTDGLEPREFFFHAMGGREGLVD 869
Query: 164 SSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 207
++ S+ G L + L+ L ++ YDGTVR+ S++I+QFE+G
Sbjct: 870 TAVRTSKSGYLQRRLINALSELETQYDGTVRD-TSDTIVQFEFG 912
>R7W504_AEGTA (tr|R7W504) DNA-directed RNA polymerase II subunit RPB1 OS=Aegilops
tauschii GN=F775_15248 PE=4 SV=1
Length = 1784
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 100/217 (46%), Gaps = 18/217 (8%)
Query: 4 IFSNGFSVGLHDF--------SISGAVKRVTDRNIGKVSPLLYQLRFIYNELVAQQLEKH 55
+ NGFS+G+ D +++ +K D+ + + P + N V Q L K
Sbjct: 716 LLQNGFSIGIGDTIADADAKKAVNELIKEARDKKL-EPEPGRTMMESFENR-VNQVLNKA 773
Query: 56 MQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVA 115
D A K +S+S+ L M+ + SK + ++Q +GQQ V G+ G
Sbjct: 774 RDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQ-NVEGKRIPFGFAGRTL 832
Query: 116 SHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLF 175
HF D P + G ++ + GL P E H++ RE ++ ++ SE G +
Sbjct: 833 PHFS-----QNDNGPESR-GFVQNSYLRGLTPEEFFFHAMGGREGLIDTAVKTSETGYIQ 886
Query: 176 KNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGD 212
+ L+ + D++V YDGTVRN + +IQF YG D
Sbjct: 887 RRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDGMD 922
>L0PB43_PNEJ8 (tr|L0PB43) DNA-directed RNA polymerase OS=Pneumocystis jiroveci
(strain SE8) GN=PNEJI1_002254 PE=3 SV=1
Length = 1390
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 73/139 (52%), Gaps = 7/139 (5%)
Query: 76 MIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYG 135
M SK + V+Q + +GQQ+ + G G + HF+ C + P A+ G
Sbjct: 756 MATCGSKGSKINVSQMVSCVGQQI-ISGSRVPNGFQDRSLPHFQKNCKFQ----PPAK-G 809
Query: 136 LLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRN 195
++ F+ GL P E L H+IS RE +V ++ +E G + + LM L D+ + YDGTVRN
Sbjct: 810 FVKNSFYSGLTPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSLQYDGTVRN 869
Query: 196 VCSNSIIQFEYGVKAGDKT 214
S+ I+QF YG D T
Sbjct: 870 -SSSGIVQFIYGDDGLDPT 887
>Q5S1Y0_9HOMO (tr|Q5S1Y0) DNA-directed RNA polymerase (Fragment) OS=Boletellus
projectellus GN=RPB1 PE=3 SV=2
Length = 997
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 103/222 (46%), Gaps = 27/222 (12%)
Query: 4 IFSNGFSVGLHDFSISGA------VKRVTDRNI-----------GKVSPLL-YQLRFIYN 45
+F NGFS+G+ D +I+G +R+ D+ ++ P+ +R +
Sbjct: 572 LFHNGFSIGIGD-TIAGPNVMEFITRRIKDKKQQVAEIIEDAYNDRLKPMPGMTIRESFE 630
Query: 46 ELVAQQLEKHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRL 105
V ++L + D A K + + + + M+ + SK + ++Q +GQQ V GR
Sbjct: 631 SKVERELNRARDDSGQYAQKNLKEDNNVKQMVTAGSKGSYINISQMSVCVGQQ-SVEGRR 689
Query: 106 YSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSS 165
G HF D + G + + GL P E H+++ RE ++ ++
Sbjct: 690 IPFGFRHRTLPHFT------KDDFSPEARGFVENSYLRGLTPQEFFFHAMAGREGLIDTA 743
Query: 166 RGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 207
+E G + + L+ L DV+VCYDGTVRN + ++QF YG
Sbjct: 744 VKTAETGYIQRRLVKALEDVMVCYDGTVRNSLGD-LVQFIYG 784
>C1GGI7_PARBD (tr|C1GGI7) DNA-directed RNA polymerase OS=Paracoccidioides
brasiliensis (strain Pb18) GN=PADG_06424 PE=3 SV=1
Length = 1458
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 70/132 (53%), Gaps = 8/132 (6%)
Query: 76 MIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYG 135
M S SK + V Q + +GQQ+ + G+ G + HF P A+ G
Sbjct: 794 MATSGSKGSNINVAQMVALVGQQI-IGGQRVQDGFQDRTLPHFPKHARQ-----PPAK-G 846
Query: 136 LLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRN 195
++ FF GL P E L H+IS RE +V ++ +E G + + LM L D+ YDGTVRN
Sbjct: 847 FVQNSFFSGLTPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSTRYDGTVRN 906
Query: 196 VCSNSIIQFEYG 207
S+SI+QF+YG
Sbjct: 907 -SSSSIVQFQYG 917
>C0SHD3_PARBP (tr|C0SHD3) DNA-directed RNA polymerase OS=Paracoccidioides
brasiliensis (strain Pb03) GN=PABG_07088 PE=3 SV=1
Length = 1449
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 70/132 (53%), Gaps = 8/132 (6%)
Query: 76 MIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYG 135
M S SK + V Q + +GQQ+ + G+ G + HF P A+ G
Sbjct: 785 MATSGSKGSNINVAQMVALVGQQI-IGGQRVQDGFQDRTLPHFPKHARQ-----PPAK-G 837
Query: 136 LLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRN 195
++ FF GL P E L H+IS RE +V ++ +E G + + LM L D+ YDGTVRN
Sbjct: 838 FVQNSFFSGLTPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSTRYDGTVRN 897
Query: 196 VCSNSIIQFEYG 207
S+SI+QF+YG
Sbjct: 898 -SSSSIVQFQYG 908
>M0RZZ8_MUSAM (tr|M0RZZ8) DNA-directed RNA polymerase OS=Musa acuminata subsp.
malaccensis PE=3 SV=1
Length = 1122
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 94/221 (42%), Gaps = 25/221 (11%)
Query: 4 IFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIYNE----------------- 46
+ N FS+G+ D A + I K + L + E
Sbjct: 200 LLQNAFSIGIGDTIADAATMEKINETISKAKNDVKDLIKLAQEKQLEAEPGRTMMDSFEN 259
Query: 47 LVAQQLEKHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLY 106
V Q L K D A K +S+S+ L M+ + SK + ++Q +GQQ V G+
Sbjct: 260 RVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQ-NVEGKRI 318
Query: 107 SKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSR 166
G ++ HF D Y G + + GL P E H++ RE ++ ++
Sbjct: 319 PFGFIDRTLPHFT------KDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 372
Query: 167 GLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 207
SE G + + L+ + D++V YDGTVRN + +IQF YG
Sbjct: 373 KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYG 412
>M0BP74_9EURY (tr|M0BP74) DNA-directed RNA polymerase OS=Halovivax asiaticus JCM
14624 GN=C479_05723 PE=3 SV=1
Length = 986
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 102/225 (45%), Gaps = 27/225 (12%)
Query: 1 MESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQDIE 60
M +I GFS+G+ D +I + D I + +L Y+ + L D E
Sbjct: 703 MRTIMHFGFSIGIDDETIEPEAREQIDETIDDAYDRVQELIEAYDRGELESLPGRTLD-E 761
Query: 61 LPAIKFVSKSSRLGD------------------MIDSKSKSALDKVTQQIGFLGQQLFVR 102
+K + SR D M +S ++ ++ +TQ G +GQQ VR
Sbjct: 762 TLEMKIMQTLSRARDNAGTIAEEHFEGDNPAVVMAESGARGSMLNLTQMAGAVGQQA-VR 820
Query: 103 GRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMV 162
G ++G + SH+K D + +G + + GL P E H++ RE +V
Sbjct: 821 GERINRGYEDRTLSHYK------PDDLSAEAHGFVENSYTAGLTPREFFFHAMGGREGLV 874
Query: 163 RSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 207
++ S+ G L + L+ L ++ YDGTVR+ S++I+QFE+G
Sbjct: 875 DTAVRTSKSGYLQRRLINALSELEAQYDGTVRD-TSDTIVQFEFG 918
>M0CTU8_9EURY (tr|M0CTU8) DNA-directed RNA polymerase OS=Haloterrigena limicola
JCM 13563 GN=C476_00262 PE=3 SV=1
Length = 975
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 109/224 (48%), Gaps = 25/224 (11%)
Query: 1 MESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIY--NELVAQQLEKHMQD 58
M +I GFS+G+ D +I ++ D I + + +L Y NEL + +
Sbjct: 692 MRAIMHFGFSIGIDDETIPEEAEKRIDETIADANDRVEELIEAYENNELESLPGRTIDET 751
Query: 59 IELPAIKFVSKS----SRLGD-----------MIDSKSKSALDKVTQQIGFLGQQLFVRG 103
+E+ ++ +S++ + D M +S ++ ++ +TQ G +GQQ VRG
Sbjct: 752 LEMKIMQTLSRARDNAGNIADEHFDDENPAVVMANSGARGSMLNLTQMAGAVGQQA-VRG 810
Query: 104 RLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVR 163
++G + SH Y+ + + +G + + GL P E H++ RE +V
Sbjct: 811 ERINRGYEDRTLSH------YEPNDLSAEAHGFVENSYTSGLTPREFFFHAMGGREGLVD 864
Query: 164 SSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 207
++ S+ G L + L+ L ++ YDGTVR+ S++I+QFE+G
Sbjct: 865 TAVRTSKSGYLQRRLINALSELETQYDGTVRD-TSDTIVQFEFG 907
>E7QTQ8_9EURY (tr|E7QTQ8) DNA-directed RNA polymerase OS=Haladaptatus
paucihalophilus DX253 GN=ZOD2009_10930 PE=3 SV=1
Length = 976
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 107/243 (44%), Gaps = 25/243 (10%)
Query: 1 MESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQD-- 58
M +I GFS+G+ D +I + D I + L Y + L D
Sbjct: 698 MRAIMHFGFSIGIDDETIPVGAQEQIDEAIDNAYERVQDLIQTYENGDLESLPGRTVDET 757
Query: 59 IELPAIKFVSKS-SRLGD--------------MIDSKSKSALDKVTQQIGFLGQQLFVRG 103
+E+ ++ + K+ GD M DS ++ +L +TQ G +GQQ VRG
Sbjct: 758 LEMKIMQTLGKARDSAGDIAEDHFASDNPAVIMADSGARGSLLNLTQMAGCVGQQA-VRG 816
Query: 104 RLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVR 163
++G + SH Y D + +G + + GL P E H++ RE +V
Sbjct: 817 ERINRGYEDRTLSH------YQADDLSADAHGFVEHSYTGGLTPLEFFFHAMGGREGLVD 870
Query: 164 SSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGDKTRYLFPAGEP 223
++ S+ G L + L+ L ++ YDGTVR+ S++I+QFE+G T+ P
Sbjct: 871 TAVRTSKSGYLQRRLINALSELETQYDGTVRD-SSDTIVQFEFGEDGTSPTQVSSDEENP 929
Query: 224 VGV 226
+ V
Sbjct: 930 IDV 932
>C7NYI6_HALMD (tr|C7NYI6) DNA-directed RNA polymerase OS=Halomicrobium mukohataei
(strain ATCC 700874 / DSM 12286 / JCM 9738 / NCIMB
13541) GN=Hmuk_0513 PE=3 SV=1
Length = 972
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 105/224 (46%), Gaps = 25/224 (11%)
Query: 1 MESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQD-- 58
M SI GFS+G+ D S+ A + I + +L Y+ + L D
Sbjct: 693 MRSIMHFGFSIGIDDESVPEAAEAQITEAIDNAYDRVEELIETYDRGELESLPGRTVDET 752
Query: 59 IELPAIKFVSKS-SRLGD--------------MIDSKSKSALDKVTQQIGFLGQQLFVRG 103
+E+ ++ + K+ GD M +S ++ ++ +TQ G +GQQ VRG
Sbjct: 753 LEMKIMQTLGKARDSAGDIAGDHFDDDNPAVVMAESGARGSMLNLTQMAGCVGQQA-VRG 811
Query: 104 RLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVR 163
++G + SHFK + D D + G + + GL+P E H++ RE +V
Sbjct: 812 ERINRGYEDRTLSHFK-QNDLSSDAH-----GFVEASYRSGLNPKEFFFHAMGGREGLVD 865
Query: 164 SSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 207
++ S+ G L + L+ L ++ YDGTVR+ N I+QFE+G
Sbjct: 866 TAVRTSKSGYLQRRLINALSELEAQYDGTVRDTSDN-IVQFEFG 908
>I1PSI4_ORYGL (tr|I1PSI4) DNA-directed RNA polymerase OS=Oryza glaberrima PE=3
SV=1
Length = 1787
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 98/228 (42%), Gaps = 29/228 (12%)
Query: 4 IFSNGFSVGLHDFSISGAVKRVTDRNIGK----VSPLLYQLRFIYNELVAQQLEKHMQDI 59
+ NGFS+G+ D A + I K V L+ Q R N+L A+ M+
Sbjct: 676 LLQNGFSIGIGDTIADAATMENINETISKAKNDVKKLIKQFR--DNQLEAEAGRTTMESF 733
Query: 60 E---------------LPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGR 104
E A K +S+S+ L M + SK ++Q +GQQ V G+
Sbjct: 734 ENRVNEVLNKARDVAGSSAEKSLSESNNLKAMATAGSKGTFINISQMTACVGQQ-NVEGK 792
Query: 105 LYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRS 164
G HF K DY + G + + GL P E H++ RE ++ +
Sbjct: 793 RIPFGFTNRTLPHFT-KNDYGPESR-----GFVENSYLRGLTPQEFFFHAMGGREGLIDT 846
Query: 165 SRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGD 212
+ SE G + + L+ + D++V YDGTVRN + +IQF YG D
Sbjct: 847 AVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDGMD 893
>Q71EU1_9SPER (tr|Q71EU1) DNA-directed RNA polymerase (Fragment) OS=Zamia
muricata GN=RPB1 PE=2 SV=1
Length = 1013
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 94/226 (41%), Gaps = 25/226 (11%)
Query: 4 IFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFI-----------------YNE 46
+ GFS+G+ D A + I K + L + +
Sbjct: 597 LLQQGFSIGIGDTIADAATMETINETISKAKNEVNHLIQLAHQKALEAXPGRTMMESFEN 656
Query: 47 LVAQQLEKHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLY 106
V Q L K D A K +S+S+ L M+ + SK + ++Q +GQQ V G+
Sbjct: 657 RVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQ-NVEGKRI 715
Query: 107 SKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSR 166
GL HF D Y G + + GL P E H++ RE ++ ++
Sbjct: 716 PFGLFGRSLPHFTR------DDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 769
Query: 167 GLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGD 212
SE G + + L+ + D++V YDGTVRN + +IQF YG D
Sbjct: 770 KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDGMD 814
>M5VSC7_PRUPE (tr|M5VSC7) Uncharacterized protein OS=Prunus persica
GN=PRUPE_ppa000093mg PE=4 SV=1
Length = 1844
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 96/226 (42%), Gaps = 25/226 (11%)
Query: 4 IFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQL--------------RFIYNEL-- 47
+ N FS+G+ D A + I K + L R + +
Sbjct: 675 LLQNAFSIGIGDTIADAATMEKINETISKAKNEVKDLISKAQSKQLEAEPGRTMMDSFEN 734
Query: 48 -VAQQLEKHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLY 106
V Q L + D A K +S+S+ L M+ + SK + ++Q +GQQ V G+
Sbjct: 735 KVNQVLNRARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQ-NVEGKRI 793
Query: 107 SKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSR 166
G ++ HF D Y G + + GL P E H++ RE ++ ++
Sbjct: 794 PYGFIDRTLPHFT------KDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 847
Query: 167 GLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGD 212
SE G + + L+ + D++V YDGTVRN + +IQF YG D
Sbjct: 848 KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDGMD 892
>Q5WMZ9_ORYSJ (tr|Q5WMZ9) DNA-directed RNA polymerase OS=Oryza sativa subsp.
japonica GN=P0001A07.9 PE=3 SV=1
Length = 1741
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 97/223 (43%), Gaps = 29/223 (13%)
Query: 4 IFSNGFSVGLHDFSISGAVKRVTDRNIGK----VSPLLYQLRFIYNELVAQQLEKHMQDI 59
+ NGFS+G+ D A + I K V L+ Q R N+L A+ M+
Sbjct: 623 LLQNGFSIGIGDTIADAATMENINETISKAKNDVKKLIKQFR--DNQLEAEAGRTTMESF 680
Query: 60 E---------------LPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGR 104
E A K +S+S+ L M + SK ++Q +GQQ V G+
Sbjct: 681 ENRVNEVLNKARDVAGSSAEKSLSESNNLKAMATAGSKGTFINISQMTACVGQQ-NVEGK 739
Query: 105 LYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRS 164
G HF K DY + G + + GL P E H++ RE ++ +
Sbjct: 740 RIPFGFTNRTLPHFT-KNDYGPESR-----GFVENSYLRGLTPQEFFFHAMGGREGLIDT 793
Query: 165 SRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 207
+ SE G + + L+ + D++V YDGTVRN + +IQF YG
Sbjct: 794 AVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYG 835
>L0B0B3_BABEQ (tr|L0B0B3) DNA-directed RNA polymerase OS=Babesia equi
GN=BEWA_006690 PE=3 SV=1
Length = 1548
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 67/132 (50%), Gaps = 8/132 (6%)
Query: 76 MIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYG 135
M +S +K AL + Q + +GQQ V G+ G + HF + C + G
Sbjct: 839 MFNSGAKGALINIAQMVACVGQQ-NVSGQRIQNGFIGRTLPHFNIGC------RDAKSRG 891
Query: 136 LLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRN 195
+ FF GL+P E H++S RE ++ ++ SE G + + LM ++ D+ +CYD TVR
Sbjct: 892 FVANSFFSGLEPEEFFFHTMSGREGLIDTAVKTSETGYMQRKLMKVMEDLAICYDHTVR- 950
Query: 196 VCSNSIIQFEYG 207
++QF YG
Sbjct: 951 ASDGHVVQFLYG 962
>Q1L5Z5_RHOMC (tr|Q1L5Z5) DNA-directed RNA polymerase (Fragment) OS=Rhododendron
macrophyllum GN=RPB1 PE=3 SV=1
Length = 589
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 96/221 (43%), Gaps = 25/221 (11%)
Query: 4 IFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQL--------------RFI---YNE 46
+ +GFS+G+ D A + I K + L R + +
Sbjct: 184 LLQSGFSIGIGDTIADAATMEKINETISKAKNEVKDLIRAAQDKQLEAEPGRTMMESFEN 243
Query: 47 LVAQQLEKHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLY 106
V Q L K D A K +++S+ L M+ + SK + ++Q +GQQ V G+
Sbjct: 244 RVNQVLNKARDDAGSSAQKSLAESNNLKAMVTAGSKGSFINISQMTACVGQQ-NVEGKRI 302
Query: 107 SKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSR 166
G ++ HF D Y G + + GL P E H++ RE ++ ++
Sbjct: 303 PYGFIDRTLPHFT------KDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 356
Query: 167 GLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 207
SE G + + L+ + D++V YDGTVRN + +IQF YG
Sbjct: 357 KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYG 396
>Q0DKN9_ORYSJ (tr|Q0DKN9) DNA-directed RNA polymerase OS=Oryza sativa subsp.
japonica GN=Os05g0151000 PE=2 SV=2
Length = 1834
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 98/228 (42%), Gaps = 29/228 (12%)
Query: 4 IFSNGFSVGLHDFSISGAVKRVTDRNIGK----VSPLLYQLRFIYNELVAQQLEKHMQDI 59
+ NGFS+G+ D A + I K V L+ Q R N+L A+ M+
Sbjct: 676 LLQNGFSIGIGDTIADAATMENINETISKAKNDVKKLIKQFR--DNQLEAEAGRTTMESF 733
Query: 60 E---------------LPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGR 104
E A K +S+S+ L M + SK ++Q +GQQ V G+
Sbjct: 734 ENRVNEVLNKARDVAGSSAEKSLSESNNLKAMATAGSKGTFINISQMTACVGQQ-NVEGK 792
Query: 105 LYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRS 164
G HF K DY + G + + GL P E H++ RE ++ +
Sbjct: 793 RIPFGFTNRTLPHFT-KNDYGPESR-----GFVENSYLRGLTPQEFFFHAMGGREGLIDT 846
Query: 165 SRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGD 212
+ SE G + + L+ + D++V YDGTVRN + +IQF YG D
Sbjct: 847 AVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDGMD 893
>F0QWN9_VULM7 (tr|F0QWN9) DNA-directed RNA polymerase OS=Vulcanisaeta moutnovskia
(strain 768-28) GN=VMUT_2059 PE=3 SV=1
Length = 891
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 77/145 (53%), Gaps = 8/145 (5%)
Query: 63 AIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKC 122
A ++++K M + ++ ++ +TQ + LGQQ +RG + +G +HF+
Sbjct: 728 AERYINKDGEAYIMAKTGARGSIVNITQMVAMLGQQT-IRGERFKRGFAGRTTAHFE--- 783
Query: 123 DYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAIL 182
GD P A+ G +R F GL P E H+ R+ +V ++ ++ G + + L+ L
Sbjct: 784 --PGDLGPIAK-GFVRNNFKTGLTPLEFFFHAAGGRDGLVDTAVRTAQSGYMQRRLINAL 840
Query: 183 RDVVVCYDGTVRNVCSNSIIQFEYG 207
+D+ V YDGTVRN S SIIQ +Y
Sbjct: 841 QDIYVTYDGTVRN-ASGSIIQTKYA 864
>Q71ET3_PSINU (tr|Q71ET3) DNA-directed RNA polymerase (Fragment) OS=Psilotum
nudum GN=RPB1 PE=2 SV=1
Length = 1013
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 99/226 (43%), Gaps = 25/226 (11%)
Query: 4 IFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIYNE----------------- 46
+ +GFS+G+ D A + +I K + +L + E
Sbjct: 597 LLQHGFSIGIGDTIADAATMEKINESIAKAKNEVKELIKMAQEKQLEAEPGRTTMESFEN 656
Query: 47 LVAQQLEKHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLY 106
V Q L + D A + +S+S+ + M+ + SK + ++Q I +GQQ V G+
Sbjct: 657 RVNQVLNRARDDAGSSAQRSLSESNNVKAMVTAGSKGSFINISQMIACVGQQ-NVEGKRI 715
Query: 107 SKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSR 166
G ++ HF D Y G + + GL P E H++ RE ++ ++
Sbjct: 716 PFGFVDRTLPHFT------KDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 769
Query: 167 GLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGD 212
SE G + + L+ + DV+V YDGTVRN + +I+F YG D
Sbjct: 770 KTSETGYIQRRLVKAMEDVMVKYDGTVRNSLGD-VIEFLYGEDGMD 814
>L9WC12_9EURY (tr|L9WC12) DNA-directed RNA polymerase OS=Natronorubrum tibetense
GA33 GN=C496_00130 PE=3 SV=1
Length = 975
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 103/225 (45%), Gaps = 27/225 (12%)
Query: 1 MESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQDIE 60
M +I GFS+G+ D +I G + D I + + +L Y + L D E
Sbjct: 692 MRAIMHFGFSIGIDDETIPGEAQDRIDETITDANDRVEELIEAYENGELESLPGRTID-E 750
Query: 61 LPAIKFVSKSSRLGD------------------MIDSKSKSALDKVTQQIGFLGQQLFVR 102
+K + SR D M +S ++ ++ +TQ G +GQQ VR
Sbjct: 751 TLEMKIMQTLSRARDNAGTIADEHFQDDNPAVVMANSGARGSMLNLTQMAGAVGQQA-VR 809
Query: 103 GRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMV 162
G ++G + SH Y+ + + +G + + GL P E H++ RE +V
Sbjct: 810 GERINRGYEDRTLSH------YEPNDLSAEAHGFVENSYTSGLTPREFFFHAMGGREGLV 863
Query: 163 RSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 207
++ S+ G L + L+ L ++ YDGTVR+ S++I+QFE+G
Sbjct: 864 DTAVRTSKSGYLQRRLINALSELESQYDGTVRD-TSDTIVQFEFG 907
>M0ZVV4_SOLTU (tr|M0ZVV4) DNA-directed RNA polymerase OS=Solanum tuberosum
GN=PGSC0003DMG400003590 PE=3 SV=1
Length = 1839
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 79/164 (48%), Gaps = 8/164 (4%)
Query: 44 YNELVAQQLEKHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRG 103
+ V Q L K D A K +S+S+ L M+ + SK + ++Q +GQQ V G
Sbjct: 732 FENRVNQVLNKARDDAGSSAEKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQ-NVEG 790
Query: 104 RLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVR 163
+ G ++ HF D Y G + + GL P E H++ RE ++
Sbjct: 791 KRIPFGFIDRTLPHFT------KDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLID 844
Query: 164 SSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 207
++ SE G + + L+ + D++V YDGTVRN + +IQF YG
Sbjct: 845 TAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYG 887
>K4BAK3_SOLLC (tr|K4BAK3) DNA-directed RNA polymerase OS=Solanum lycopersicum
GN=Solyc02g083350.2 PE=3 SV=1
Length = 1846
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 79/164 (48%), Gaps = 8/164 (4%)
Query: 44 YNELVAQQLEKHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRG 103
+ V Q L K D A K +S+S+ L M+ + SK + ++Q +GQQ V G
Sbjct: 732 FENRVNQVLNKARDDAGSSAEKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQ-NVEG 790
Query: 104 RLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVR 163
+ G ++ HF D Y G + + GL P E H++ RE ++
Sbjct: 791 KRIPFGFIDRTLPHFT------KDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLID 844
Query: 164 SSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 207
++ SE G + + L+ + D++V YDGTVRN + +IQF YG
Sbjct: 845 TAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYG 887
>Q5I2R4_9HOMO (tr|Q5I2R4) DNA-directed RNA polymerase (Fragment) OS=Strobilomyces
floccopus GN=RPB1 PE=3 SV=1
Length = 597
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 101/221 (45%), Gaps = 25/221 (11%)
Query: 4 IFSNGFSVGLHDFSISGAVKRVTDRNIG----------------KVSPLL-YQLRFIYNE 46
+F NGFS+G+ D V + IG ++ P+ +R +
Sbjct: 180 LFHNGFSIGIGDTIAGPKVMTYITQRIGEKKQQVAEIIDDAYHDRLKPMPGMTIRESFES 239
Query: 47 LVAQQLEKHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLY 106
V ++L + D A K + + + + M+ + SK + ++Q +GQQ V GR
Sbjct: 240 KVERELNRARDDSGQYAQKNLKEDNNVKQMVTAGSKGSYINISQMSVCVGQQS-VEGRRI 298
Query: 107 SKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSR 166
G HF K D+ P A G + + GL P E H+++ RE ++ ++
Sbjct: 299 PFGFRHRTLPHFT-KDDFS----PEAR-GFVENSYLRGLTPQEYFFHAMAGREGLIDTAV 352
Query: 167 GLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 207
+E G + + L+ L DV+VCYDGTVRN + +IQF YG
Sbjct: 353 KTAETGYIQRRLVKALEDVMVCYDGTVRNSLGD-LIQFIYG 392
>L0IA28_HALRX (tr|L0IA28) DNA-directed RNA polymerase OS=Halovivax ruber (strain
DSM 18193 / JCM 13892 / XH-70) GN=Halru_0466 PE=3 SV=1
Length = 986
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 101/225 (44%), Gaps = 27/225 (12%)
Query: 1 MESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQDIE 60
M +I GFS+G+ D +I + D I + +L Y + L D E
Sbjct: 703 MRTIMHFGFSIGIDDETIEPEAREQIDETIDDAYDRVQELIEAYERGELESLPGRTLD-E 761
Query: 61 LPAIKFVSKSSRLGD------------------MIDSKSKSALDKVTQQIGFLGQQLFVR 102
+K + SR D M +S ++ ++ +TQ G +GQQ VR
Sbjct: 762 TLEMKIMQTLSRARDNAGTIAEEHFEGDNPAVVMAESGARGSMLNLTQMAGAVGQQA-VR 820
Query: 103 GRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMV 162
G ++G + SH+K D + +G + + GL P E H++ RE +V
Sbjct: 821 GERINRGYEDRTLSHYK------PDDLSAEAHGFVENSYTAGLTPREFFFHAMGGREGLV 874
Query: 163 RSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 207
++ S+ G L + L+ L ++ YDGTVR+ S++I+QFE+G
Sbjct: 875 DTAVRTSKSGYLQRRLINALSELEAQYDGTVRD-TSDTIVQFEFG 918
>M0N8V3_9EURY (tr|M0N8V3) DNA-directed RNA polymerase OS=Halococcus thailandensis
JCM 13552 GN=C451_08533 PE=3 SV=1
Length = 985
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 65/225 (28%), Positives = 106/225 (47%), Gaps = 27/225 (12%)
Query: 1 MESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQD-- 58
M +I GFS+G+ D SIS A + D ++ + +L Y + L D
Sbjct: 699 MRAIMHFGFSIGIDDESISDAAEAQIDESMENAYERVQELIDTYENDDLESLPGRTVDET 758
Query: 59 IELPAIKFVSKS-SRLGDMID--------------SKSKSALDKVTQQIGFLGQQLFVRG 103
+E+ ++ + K+ GD+ D S ++ ++ +TQ +GQQ VRG
Sbjct: 759 LEMKIMQTLGKARDSAGDIADEHFDDDNPAVIMAESGARGSMLNLTQMAACVGQQA-VRG 817
Query: 104 RLYSKGLLEDVASHFKLKCDYDGDGYPSAE-YGLLRGCFFHGLDPFEELVHSISTREIMV 162
++G + SHFK G SAE +G + + GL P E H++ RE +V
Sbjct: 818 ERINRGYEDRTLSHFKP-------GDLSAEAHGFVEDSYRSGLTPREFFFHAMGGREGLV 870
Query: 163 RSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 207
++ S+ G L + L+ L ++ YDGTVR+ N I+QFE+G
Sbjct: 871 DTAVRTSKSGYLQRRLINALSELETQYDGTVRDTSDN-IVQFEFG 914
>Q1L5Y6_SOLLC (tr|Q1L5Y6) DNA-directed RNA polymerase (Fragment) OS=Solanum
lycopersicum GN=RPB1 PE=2 SV=1
Length = 773
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 79/164 (48%), Gaps = 8/164 (4%)
Query: 44 YNELVAQQLEKHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRG 103
+ V Q L K D A K +S+S+ L M+ + SK + ++Q +GQQ V G
Sbjct: 409 FENRVNQVLNKARDDAGSSAEKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQ-NVEG 467
Query: 104 RLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVR 163
+ G ++ HF D Y G + + GL P E H++ RE ++
Sbjct: 468 KRIPFGFIDRTLPHFT------KDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLID 521
Query: 164 SSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 207
++ SE G + + L+ + D++V YDGTVRN + +IQF YG
Sbjct: 522 TAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYG 564
>B6K857_SCHJY (tr|B6K857) DNA-directed RNA polymerase OS=Schizosaccharomyces
japonicus (strain yFS275 / FY16936) GN=SJAG_04934 PE=3
SV=1
Length = 1406
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 77/150 (51%), Gaps = 9/150 (6%)
Query: 76 MIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYG 135
M SK + V+Q + +GQQ+ + G+ G + HF+ +P A+ G
Sbjct: 774 MATCGSKGSKINVSQMVACVGQQI-ISGKRVPDGFQDRSLPHFR-----KNSKHPLAK-G 826
Query: 136 LLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRN 195
+ F+ GL P E L H+IS RE +V ++ +E G + + LM L D+ YDGTVR+
Sbjct: 827 FVSNSFYTGLTPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLTSAYDGTVRS 886
Query: 196 VCSNSIIQFEYGVKAGDKTRYLFPAGEPVG 225
++SI+QF YG D T YL G PV
Sbjct: 887 -SNSSIVQFTYGDDGLDPT-YLEGDGTPVA 914
>B7SNX1_TOBAC (tr|B7SNX1) DNA-directed RNA polymerase (Fragment) OS=Nicotiana
tabacum GN=rpb1 PE=2 SV=1
Length = 1010
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 79/164 (48%), Gaps = 8/164 (4%)
Query: 44 YNELVAQQLEKHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRG 103
+ V Q L K D A K +S+S+ L M+ + SK + ++Q +GQQ V G
Sbjct: 651 FENRVNQVLNKARDDAGSSAEKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQ-NVEG 709
Query: 104 RLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVR 163
+ G ++ HF D Y G + + GL P E H++ RE ++
Sbjct: 710 KRIPFGFIDRTLPHFT------KDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLID 763
Query: 164 SSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 207
++ SE G + + L+ + D++V YDGTVRN + +IQF YG
Sbjct: 764 TAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYG 806
>O04144_9VIRI (tr|O04144) DNA-directed RNA polymerase (Fragment) OS=Spirogyra sp.
GN=rpb1 PE=3 SV=1
Length = 613
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 95/221 (42%), Gaps = 25/221 (11%)
Query: 4 IFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQL--------------RFI---YNE 46
+ GFS+G+ D + + I K + L R + +
Sbjct: 185 LLQQGFSIGIGDTIADASTMDTINETIAKAKTEVKDLIEAACEKQLEAQPGRTLMESFEN 244
Query: 47 LVAQQLEKHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLY 106
V Q L K D A +S+S+ + M+ + SK + ++Q I +GQQ V G+
Sbjct: 245 RVNQVLNKARDDAGRAAQSSLSESNNVKAMVTAGSKGSFINISQMIACVGQQ-NVEGKRI 303
Query: 107 SKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSR 166
G ++ HF D Y G + + GL P E H++ RE ++ ++
Sbjct: 304 PFGFVDRTLPHFT------KDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 357
Query: 167 GLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 207
SE G + + L+ + DV+V YDGTVRN + +IQF YG
Sbjct: 358 KTSETGYIQRRLVKAMEDVMVKYDGTVRNSLGD-VIQFLYG 397
>E1QRA0_VULDI (tr|E1QRA0) DNA-directed RNA polymerase OS=Vulcanisaeta distributa
(strain DSM 14429 / JCM 11212 / NBRC 100878 / IC-017)
GN=Vdis_1211 PE=3 SV=1
Length = 891
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 77/145 (53%), Gaps = 8/145 (5%)
Query: 63 AIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKC 122
A K+++K M + ++ ++ +TQ + +GQQ +RG + +G +HF+
Sbjct: 728 AEKYINKDGEAYIMAKTGARGSIVNITQMVAMIGQQT-IRGERFKRGFTGRTTAHFE--- 783
Query: 123 DYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAIL 182
GD P A+ G +R F GL P E H+ R+ +V ++ ++ G + + L+ L
Sbjct: 784 --PGDLGPMAK-GFVRNNFKVGLTPVEFFFHAAGGRDGLVDTAVRTAQSGYMQRRLINAL 840
Query: 183 RDVVVCYDGTVRNVCSNSIIQFEYG 207
+D+ V YDGTVRN S SIIQ +Y
Sbjct: 841 QDIYVAYDGTVRN-ASGSIIQTKYA 864
>L1K4K9_GUITH (tr|L1K4K9) DNA-directed RNA polymerase OS=Guillardia theta
CCMP2712 GN=GUITHDRAFT_156792 PE=3 SV=1
Length = 1281
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 108/237 (45%), Gaps = 25/237 (10%)
Query: 7 NGFSVGLHDFSISGAVKR----------------VTDRNIGKVSPLL-YQLRFIYNELVA 49
+GF+ G+ D + +K+ + D GK+ + L ++V
Sbjct: 678 HGFTFGIEDVMPTEPIKKAKAEAMQKVKDKCDKLIADYRAGKLQRVPGCDLELSLEQMVG 737
Query: 50 QQLEKHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKG 109
++L+ + A K + +++ M KSK + D ++Q IG LGQQ R+ G
Sbjct: 738 KELDDVRNLVASAAKKELHYDNKVLVMALCKSKGSNDNISQMIGCLGQQKLGGSRI-PNG 796
Query: 110 LLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLS 169
+ HF++ P+A+ G + FF GL+P E +H+++ RE +V ++ +
Sbjct: 797 FIGRTLPHFEMYAKE-----PAAK-GFVENSFFTGLNPTEFFMHTMTGREGLVDTAVKTA 850
Query: 170 EPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGDKTRYLFPAGEPVGV 226
E G + + LM L D+ + YD TVRN I+QF YG D G+P+ +
Sbjct: 851 ECGYMARRLMKSLEDLSIHYDSTVRN-SHGCIVQFRYGDDGLDPMLMEDDDGKPINM 906
>G8YNQ4_PICSO (tr|G8YNQ4) DNA-directed RNA polymerase OS=Pichia sorbitophila
(strain ATCC MYA-4447 / BCRC 22081 / CBS 7064 / NBRC
10061 / NRRL Y-12695) GN=Piso0_001648 PE=3 SV=1
Length = 1454
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 93/205 (45%), Gaps = 21/205 (10%)
Query: 76 MIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYG 135
M SK + V+Q + +GQQ+ + G G + HF P ++ G
Sbjct: 789 MATCGSKGSTLNVSQMVAVVGQQI-ISGNRVPDGFQDRSLPHFT-----KNSKTPQSK-G 841
Query: 136 LLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRN 195
+R FF GL P E L H+IS RE +V ++ +E G + + LM L D+ YD TVRN
Sbjct: 842 FVRNSFFSGLSPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSTQYDNTVRN 901
Query: 196 VCSNSIIQFEYGVKAGDKTRYLFPAGE--PVGVLAATSMSNPAYKAVLDASPSSSCSWEL 253
SN ++QF YG GD L G+ PV + A+ D +E
Sbjct: 902 -SSNGVVQFTYG---GDGLDPLDMEGDARPVNF---NRQWDHAFNVTFDVKDRGLKPYE- 953
Query: 254 MKEILLCKVNFRNEPIDRRVILYLN 278
+L VN+ P++++++ Y N
Sbjct: 954 ----ILNAVNYVLNPLEKKLVRYSN 974
>A7I9N6_METB6 (tr|A7I9N6) DNA-directed RNA polymerase OS=Methanoregula boonei
(strain 6A8) GN=Mboo_1932 PE=3 SV=1
Length = 879
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 79/151 (52%), Gaps = 10/151 (6%)
Query: 76 MIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYG 135
M S ++ ++ +TQ G +GQQ VRG +G + HFK + D D + G
Sbjct: 727 MAVSGARGSMLNLTQMAGCIGQQ-SVRGERIVRGYDDRTLPHFK-RGDRGADAH-----G 779
Query: 136 LLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRN 195
+ + GL+P E H+I RE +V ++ S+ G L + ++ L+D+ V YDGTVR
Sbjct: 780 FIAHSYKGGLNPTEFFFHAIGGREGLVDTAVRTSQSGYLQRRMINALQDLKVAYDGTVRT 839
Query: 196 VCSNSIIQFEYGVKAGDKTRYLFPAGEPVGV 226
IIQF+YG + D T+ F G+PV V
Sbjct: 840 T-GGRIIQFQYGEDSTDPTKSAF--GDPVDV 867
>A9CTM9_ENTBH (tr|A9CTM9) DNA-directed RNA polymerase OS=Enterocytozoon bieneusi
(strain H348) GN=EBI_22530 PE=3 SV=1
Length = 1174
Score = 73.6 bits (179), Expect = 9e-11, Method: Composition-based stats.
Identities = 89/342 (26%), Positives = 137/342 (40%), Gaps = 50/342 (14%)
Query: 4 IFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIYNEL----------VAQQLE 53
I GFS+GL D +S D N K +L + I E L
Sbjct: 627 IMEYGFSIGLDDIYLS------NDLNRSKNKLVLNIINTINKECNDGTNRSELKKTSLLN 680
Query: 54 KHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLED 113
K +D + ++K++ M + SK + ++Q I +GQQ+ V G G+ +
Sbjct: 681 KIREDCGTMCLNTLNKNNAAVVMAECGSKGSKINISQMITCVGQQI-VSGMRIQNGMYDK 739
Query: 114 VASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGT 173
H K + D G + FF GL +E H+IS RE +V ++ ++ G
Sbjct: 740 TIPHMKNIPNILDD---VIYRGFVYNSFFTGLKAYEFFFHAISGREGLVDTAVKTADTGY 796
Query: 174 LFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGD---------KTRYLFPAGEPV 224
+ + LM L ++ + YD TVRN +N IIQF YG D + G V
Sbjct: 797 MQRRLMKALENLSIKYDNTVRN-NNNEIIQFLYGEDGKDPLYDETIDATIKKFIEPGTAV 855
Query: 225 GVLAATSMSNPAYKAVLD-------ASPSSSCSWELMKEILLCKVNFRNEPIDRRVILYL 277
G +AA S+ P + L AS + + +KEI+ + PI + L
Sbjct: 856 GAIAAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINATSTI-STPIISVKNVNL 914
Query: 278 NDCDCGRRYCRENAAYIVKNQLRKVSLKDTAVDFIVEYQQQR 319
D AYI+K +L K LKD + Y ++
Sbjct: 915 QD------------AYIIKQKLEKNVLKDIIKRIDIMYTHEK 944
>B0DB45_LACBS (tr|B0DB45) DNA-directed RNA polymerase OS=Laccaria bicolor (strain
S238N-H82 / ATCC MYA-4686) GN=LACBIDRAFT_327452 PE=3
SV=1
Length = 1742
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 102/222 (45%), Gaps = 27/222 (12%)
Query: 4 IFSNGFSVGLHDF-----SISGAVKRVTDR--NIGKV-----------SPLLYQLRFIYN 45
+F NGFS+G+ D ++S + + D N+ K+ +P + +R +
Sbjct: 662 LFHNGFSIGIGDTIADRGTMSYITQTIADSKANVAKIINDATHDRLKAAPGM-TIRESFE 720
Query: 46 ELVAQQLEKHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRL 105
LV +QL A K + + + + M+ + SK + ++Q +GQQ V GR
Sbjct: 721 SLVERQLNLARDTSGQYAQKHLKEDNNVKQMVVAGSKGSFINISQMSVCVGQQ-SVEGRR 779
Query: 106 YSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSS 165
G HF D + G + + GL P E H+++ RE ++ ++
Sbjct: 780 IPFGFRHRTLPHFT------KDDFSPESRGFVENSYLRGLTPQEFFFHAMAGREGLIDTA 833
Query: 166 RGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 207
+E G + + L+ L DV+VCYDGTVRN + +IQF YG
Sbjct: 834 VKTAETGYIQRRLVKALEDVMVCYDGTVRNSLGD-LIQFVYG 874
>Q71ET5_NYMOD (tr|Q71ET5) DNA-directed RNA polymerase (Fragment) OS=Nymphaea
odorata GN=RPB1 PE=2 SV=1
Length = 1013
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 97/226 (42%), Gaps = 25/226 (11%)
Query: 4 IFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQL--------------RFI---YNE 46
+ N FS+G+ D + + I K + +L R + +
Sbjct: 597 LLQNAFSIGIGDTIADASTMEKINETISKAKNEVKELIKAAQEKQLEAEPGRTMMESFEN 656
Query: 47 LVAQQLEKHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLY 106
V Q L K D A + +S+S+ L M+ + SK + ++Q +GQQ V G+
Sbjct: 657 RVNQVLNKARDDAGSSAQRSLSESNNLKAMVTAGSKGSFINISQMTACVGQQ-NVEGKRI 715
Query: 107 SKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSR 166
G ++ HF D Y G + + GL P E H++ RE ++ ++
Sbjct: 716 PFGFIDRTLPHFT------KDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 769
Query: 167 GLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGD 212
SE G + + L+ + D++V YDGTVRN + +IQF YG D
Sbjct: 770 KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDGMD 814
>B9FZ51_ORYSJ (tr|B9FZ51) DNA-directed RNA polymerase OS=Oryza sativa subsp.
japonica GN=OsJ_26081 PE=3 SV=1
Length = 1526
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 79/162 (48%), Gaps = 8/162 (4%)
Query: 46 ELVAQQLEKHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRL 105
EL + L K D A K +S+S+ L M+ + SK + ++Q +GQQ V G+
Sbjct: 405 ELGYKVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQ-NVEGKR 463
Query: 106 YSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSS 165
G ++ HF D Y G + + GL P E H++ RE ++ ++
Sbjct: 464 IPFGFIDRTLPHFT------KDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRESLIDTA 517
Query: 166 RGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 207
SE G + + L+ + D++V YDGTVRN + +IQF YG
Sbjct: 518 VKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYG 558
>D9Q2P3_ACIS3 (tr|D9Q2P3) DNA-directed RNA polymerase OS=Acidilobus
saccharovorans (strain DSM 16705 / VKM B-2471 / 345-15)
GN=ASAC_1176 PE=3 SV=1
Length = 889
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 98/217 (45%), Gaps = 25/217 (11%)
Query: 8 GFSVGLHDFSIS----GAVKRVTDRNIGKVSPLLYQLRFIYNELVA-------------Q 50
GFS+ + D I + ++T+ V L+ Q R E++ Q
Sbjct: 652 GFSISISDIEIPKEARDKIAKMTEEAKEDVMKLIEQYRNGTLEIIPGRTLEESLELKIIQ 711
Query: 51 QLEKHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGL 110
+L+K D AI +++ + M + ++ + +TQ LGQQ VRGR +G
Sbjct: 712 RLQKLRDDAGKTAIGYMNPFNNAFIMARTGARGSDINITQMAAMLGQQT-VRGRRIVRGF 770
Query: 111 LEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSE 170
HF+ GD P A G + F GL P E H+ RE +V ++ S+
Sbjct: 771 RTRTLPHFR-----PGDLSPEAR-GFVVSNFRDGLKPHEVFFHAAGGREGLVDTALKTSQ 824
Query: 171 PGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 207
G + + L+ L+D+ V YDGTVR+ N IIQF YG
Sbjct: 825 SGYMQRRLINALQDLHVAYDGTVRDSQDN-IIQFRYG 860
>M0AIR1_NATA1 (tr|M0AIR1) DNA-directed RNA polymerase OS=Natrialba asiatica
(strain ATCC 700177 / DSM 12278 / JCM 9576 / FERM
P-10747 / NBRC 102637 / 172P1) GN=C481_17382 PE=3 SV=1
Length = 975
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 102/225 (45%), Gaps = 27/225 (12%)
Query: 1 MESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQDIE 60
M +I GFS+G+ D +I A + D I + + +L Y + L D E
Sbjct: 692 MRAIMHFGFSIGIDDETIPEAAQERIDETIEDANDRVEELIEAYERGELESLPGRTLD-E 750
Query: 61 LPAIKFVSKSSRLGD------------------MIDSKSKSALDKVTQQIGFLGQQLFVR 102
+K + SR D M +S ++ ++ +TQ G +GQQ VR
Sbjct: 751 TLEMKIMQTLSRARDNAGNIADEHFSDENPAVVMANSGARGSMLNLTQMAGAVGQQA-VR 809
Query: 103 GRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMV 162
G ++G + SH Y + + +G + + GL P E H++ RE +V
Sbjct: 810 GERINRGYEDRTLSH------YQPNDLSAEAHGFVENSYTSGLTPREFFFHAMGGREGLV 863
Query: 163 RSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 207
++ S+ G L + L+ L ++ YDGTVR+ S++I+QFE+G
Sbjct: 864 DTAVRTSKSGYLQRRLINALSELEAQYDGTVRD-TSDTIVQFEFG 907
>G7JYR7_MEDTR (tr|G7JYR7) DNA-directed RNA polymerase OS=Medicago truncatula
GN=MTR_5g023020 PE=3 SV=1
Length = 1864
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 80/169 (47%), Gaps = 8/169 (4%)
Query: 44 YNELVAQQLEKHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRG 103
+ V Q L + D A K +S+S+ L M+ + SK + ++Q +GQQ V G
Sbjct: 750 FENRVNQTLNRARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQ-NVEG 808
Query: 104 RLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVR 163
+ G ++ HF D Y G + + GL P E H++ RE ++
Sbjct: 809 KRIPFGFIDRTLPHFT------KDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLID 862
Query: 164 SSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGD 212
++ SE G + + L+ + D++V YDGTVRN + +IQF YG D
Sbjct: 863 TAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDGMD 910
>H8X2B4_CANO9 (tr|H8X2B4) DNA-directed RNA polymerase OS=Candida orthopsilosis
(strain 90-125) GN=CORT_0B11370 PE=3 SV=1
Length = 1443
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 99/217 (45%), Gaps = 25/217 (11%)
Query: 8 GFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIYN--ELVAQQLEKHMQDIELPAIK 65
GFS+G++D + + +K+ + + + QL +YN +L Q Q +E
Sbjct: 707 GFSIGINDVTPAHELKQKKELMVEQAYLKCDQLIDLYNRGKLETQPGCNEEQTLEAKIGG 766
Query: 66 FVSK-SSRLGD--------------MIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGL 110
+SK +GD M SK + V+Q + +GQQ+ + G G
Sbjct: 767 LLSKVREEVGDVCIRELDSLNAPLIMATCGSKGSTLNVSQMVAVVGQQI-ISGHRVPDGF 825
Query: 111 LEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSE 170
+ HF P ++ G +R FF GL P E L H+IS RE +V ++ +E
Sbjct: 826 QDRSLPHFT-----KNSKTPQSK-GFVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAE 879
Query: 171 PGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 207
G + + LM L D+ YD TVRN SN I+QF YG
Sbjct: 880 TGYMSRRLMKSLEDLSSQYDNTVRN-SSNGIVQFTYG 915
>Q5A164_CANAL (tr|Q5A164) DNA-directed RNA polymerase OS=Candida albicans (strain
SC5314 / ATCC MYA-2876) GN=RPO3 PE=3 SV=1
Length = 1448
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 99/217 (45%), Gaps = 25/217 (11%)
Query: 8 GFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIYN--ELVAQQLEKHMQDIELPAIK 65
GFS+G++D + + +K+ + + + QL +YN +L Q Q +E
Sbjct: 704 GFSIGINDVTPADELKQKKELMVEQAYLKCDQLIDLYNRGKLETQPGCNEEQTLEAKIGG 763
Query: 66 FVSK-SSRLGD--------------MIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGL 110
+SK +GD M SK + V+Q + +GQQ+ + G G
Sbjct: 764 LLSKVREEVGDVCIRELDSLNAPLIMATCGSKGSTLNVSQMVAVVGQQI-ISGHRVPDGF 822
Query: 111 LEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSE 170
+ HF P ++ G +R FF GL P E L H+IS RE +V ++ +E
Sbjct: 823 QDRSLPHFT-----KNSKTPQSK-GFVRNSFFSGLTPPEFLFHAISGREGLVDTAVKTAE 876
Query: 171 PGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 207
G + + LM L D+ YD TVRN SN I+QF YG
Sbjct: 877 TGYMSRRLMKSLEDLSSQYDNTVRN-SSNGIVQFTYG 912
>C4YGE6_CANAW (tr|C4YGE6) DNA-directed RNA polymerase OS=Candida albicans (strain
WO-1) GN=CAWG_03122 PE=3 SV=1
Length = 1448
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 99/217 (45%), Gaps = 25/217 (11%)
Query: 8 GFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIYN--ELVAQQLEKHMQDIELPAIK 65
GFS+G++D + + +K+ + + + QL +YN +L Q Q +E
Sbjct: 704 GFSIGINDVTPADELKQKKELMVEQAYLKCDQLIDLYNRGKLETQPGCNEEQTLEAKIGG 763
Query: 66 FVSK-SSRLGD--------------MIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGL 110
+SK +GD M SK + V+Q + +GQQ+ + G G
Sbjct: 764 LLSKVREEVGDVCIRELDSLNAPLIMATCGSKGSTLNVSQMVAVVGQQI-ISGHRVPDGF 822
Query: 111 LEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSE 170
+ HF P ++ G +R FF GL P E L H+IS RE +V ++ +E
Sbjct: 823 QDRSLPHFT-----KNSKTPQSK-GFVRNSFFSGLTPPEFLFHAISGREGLVDTAVKTAE 876
Query: 171 PGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 207
G + + LM L D+ YD TVRN SN I+QF YG
Sbjct: 877 TGYMSRRLMKSLEDLSSQYDNTVRN-SSNGIVQFTYG 912
>M0BB21_9EURY (tr|M0BB21) DNA-directed RNA polymerase OS=Natrialba aegyptia DSM
13077 GN=C480_07532 PE=3 SV=1
Length = 975
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 102/225 (45%), Gaps = 27/225 (12%)
Query: 1 MESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQDIE 60
M +I GFS+G+ D +I A + D I + + +L Y + L D E
Sbjct: 692 MRAIMHFGFSIGIDDETIPEAAQERIDETIEDANDRVEELIEAYERGELESLPGRTLD-E 750
Query: 61 LPAIKFVSKSSRLGD------------------MIDSKSKSALDKVTQQIGFLGQQLFVR 102
+K + SR D M +S ++ ++ +TQ G +GQQ VR
Sbjct: 751 TLEMKIMQTLSRARDNAGNIADEHFEDENPAVVMANSGARGSMLNLTQMAGAVGQQA-VR 809
Query: 103 GRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMV 162
G ++G + SH Y + + +G + + GL P E H++ RE +V
Sbjct: 810 GERINRGYEDRTLSH------YQPNDLSAEAHGFVENSYTSGLTPREFFFHAMGGREGLV 863
Query: 163 RSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 207
++ S+ G L + L+ L ++ YDGTVR+ S++I+QFE+G
Sbjct: 864 DTAVRTSKSGYLQRRLINALSELEAQYDGTVRD-TSDTIVQFEFG 907
>M0BMM5_9EURY (tr|M0BMM5) DNA-directed RNA polymerase OS=Haloterrigena
thermotolerans DSM 11522 GN=C478_11230 PE=3 SV=1
Length = 975
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 108/224 (48%), Gaps = 25/224 (11%)
Query: 1 MESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIY--NELVAQQLEKHMQD 58
M +I GFS+G+ D +I + D I + + +L Y NEL + +
Sbjct: 692 MRAIMHFGFSIGIDDETIPDEAESRIDETIADANDRVEELIEAYENNELESLPGRTIDET 751
Query: 59 IELPAIKFVSKS----SRLGD-----------MIDSKSKSALDKVTQQIGFLGQQLFVRG 103
+E+ ++ +S++ + D M +S ++ ++ +TQ G +GQQ VRG
Sbjct: 752 LEMKIMQTLSRARDNAGNIADEHFQDDNPAVVMANSGARGSMLNLTQMAGAVGQQA-VRG 810
Query: 104 RLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVR 163
++G + SH Y+ + + +G + + GL P E H++ RE +V
Sbjct: 811 ERINRGYEDRTLSH------YEPNDLSAEAHGFVENSYTSGLTPREFFFHAMGGREGLVD 864
Query: 164 SSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 207
++ S+ G L + L+ L ++ YDGTVR+ S++I+QFE+G
Sbjct: 865 TAVRTSKSGYLQRRLINALSELETQYDGTVRD-TSDTIVQFEFG 907
>Q5A0Z3_CANAL (tr|Q5A0Z3) DNA-directed RNA polymerase OS=Candida albicans (strain
SC5314 / ATCC MYA-2876) GN=RPO3 PE=3 SV=1
Length = 1448
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 99/217 (45%), Gaps = 25/217 (11%)
Query: 8 GFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIYN--ELVAQQLEKHMQDIELPAIK 65
GFS+G++D + + +K+ + + + QL +YN +L Q Q +E
Sbjct: 704 GFSIGINDVTPADELKQKKELMVEQAYLKCDQLIDLYNRGKLETQPGCNEEQTLEAKIGG 763
Query: 66 FVSK-SSRLGD--------------MIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGL 110
+SK +GD M SK + V+Q + +GQQ+ + G G
Sbjct: 764 LLSKVREEVGDVCIRELDSLNAPLIMATCGSKGSTLNVSQMVAVVGQQI-ISGHRVPDGF 822
Query: 111 LEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSE 170
+ HF P ++ G +R FF GL P E L H+IS RE +V ++ +E
Sbjct: 823 QDRSLPHFT-----KNSKTPQSK-GFVRNSFFSGLTPPEFLFHAISGREGLVDTAVKTAE 876
Query: 171 PGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 207
G + + LM L D+ YD TVRN SN I+QF YG
Sbjct: 877 TGYMSRRLMKSLEDLSSQYDNTVRN-SSNGIVQFTYG 912
>B9WF61_CANDC (tr|B9WF61) DNA-directed RNA polymerase OS=Candida dubliniensis
(strain CD36 / ATCC MYA-646 / CBS 7987 / NCPF 3949 /
NRRL Y-17841) GN=CD36_46530 PE=3 SV=1
Length = 1448
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 99/217 (45%), Gaps = 25/217 (11%)
Query: 8 GFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIYN--ELVAQQLEKHMQDIELPAIK 65
GFS+G++D + + +K+ + + + QL +YN +L Q Q +E
Sbjct: 704 GFSIGINDVTPADELKQKKELMVEQAYLKCDQLIDLYNRGKLETQPGCNEEQTLEAKIGG 763
Query: 66 FVSK-SSRLGD--------------MIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGL 110
+SK +GD M SK + V+Q + +GQQ+ + G G
Sbjct: 764 LLSKVREEVGDVCIRELDSLNAPLIMATCGSKGSTLNVSQMVAVVGQQI-ISGHRVPDGF 822
Query: 111 LEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSE 170
+ HF P ++ G +R FF GL P E L H+IS RE +V ++ +E
Sbjct: 823 QDRSLPHFT-----KNSKTPQSK-GFVRNSFFSGLTPPEFLFHAISGREGLVDTAVKTAE 876
Query: 171 PGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 207
G + + LM L D+ YD TVRN SN I+QF YG
Sbjct: 877 TGYMSRRLMKSLEDLSSQYDNTVRN-SSNGIVQFTYG 912
>Q2TUN9_THUOC (tr|Q2TUN9) DNA-directed RNA polymerase (Fragment) OS=Thuja
occidentalis GN=rpb1 PE=2 SV=1
Length = 1013
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 97/226 (42%), Gaps = 25/226 (11%)
Query: 4 IFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQL--------------RFI---YNE 46
+ GFS+G+ D A V + I K + QL R + +
Sbjct: 597 LLQQGFSIGIGDTIADAATMEVINETISKAKNEVKQLIKAAQDKQLEAEPGRTMMESFEN 656
Query: 47 LVAQQLEKHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLY 106
V Q L K D A K +S+S+ L M+ + SK + ++Q +GQQ V G+
Sbjct: 657 RVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQ-NVEGKRI 715
Query: 107 SKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSR 166
G HF D P + G + + GL P E H++ RE ++ ++
Sbjct: 716 PYGFDGRTLPHFT-----KDDKGPESR-GFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 769
Query: 167 GLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGD 212
SE G + + L+ + D++V YDGTVRN + +IQF YG D
Sbjct: 770 KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDGMD 814
>F0XVN3_AURAN (tr|F0XVN3) DNA-directed RNA polymerase OS=Aureococcus
anophagefferens GN=AURANDRAFT_35850 PE=3 SV=1
Length = 1398
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 105/227 (46%), Gaps = 38/227 (16%)
Query: 5 FSNGFSVGLHDFSISGAV----------------KRVTDRNIGKVS--PLLYQLRFIYNE 46
+ GFS+G+ D + S AV +++ G ++ P L+ + E
Sbjct: 688 YHKGFSIGIDDVTPSDAVLALKAQLLEEGHAEARRKIEAYESGSLALQPGCDALQSLEAE 747
Query: 47 L------VAQQLEKHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLF 100
L V +Q K++ +LP S S R+ M + SK + V+Q I LGQQ
Sbjct: 748 LTGLLGKVREQAGKNLMTRDLPR----SNSPRI--MAECGSKGSAINVSQMIACLGQQA- 800
Query: 101 VRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREI 160
V G+ G ++ HF++ G+ P A G + F+ GL E H++ RE
Sbjct: 801 VDGKRIQNGFVQRTLPHFEV-----GELSPGAR-GFVANSFYSGLTATEFFFHTMGGREG 854
Query: 161 MVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 207
+V ++ ++ G + + LM L D+ V YDGTVRN N I+QF YG
Sbjct: 855 LVDTAVKTAQTGYMARRLMKALEDLSVGYDGTVRNSEKN-IVQFTYG 900
>M7ZGC7_TRIUA (tr|M7ZGC7) DNA-directed RNA polymerase II subunit RPB1 OS=Triticum
urartu GN=TRIUR3_20757 PE=4 SV=1
Length = 1846
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 99/217 (45%), Gaps = 18/217 (8%)
Query: 4 IFSNGFSVGLHDF--------SISGAVKRVTDRNIGKVSPLLYQLRFIYNELVAQQLEKH 55
+ NGFS+G+ D +++ +K D+ + + P + N V L K
Sbjct: 771 LLQNGFSIGIGDTIADADAKKAVNELIKEARDKKL-EPEPGRTMMESFENR-VNHVLNKA 828
Query: 56 MQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVA 115
D A K +S+S+ L M+ + SK + ++Q +GQQ V G+ G
Sbjct: 829 RDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQ-NVEGKRIPFGFAGRTL 887
Query: 116 SHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLF 175
HF D P + G ++ + GL P E H++ RE ++ ++ SE G +
Sbjct: 888 PHFS-----QNDNGPESR-GFVQNSYLRGLTPEEFFFHAMGGREGLIDTAVKTSETGYIQ 941
Query: 176 KNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGD 212
+ L+ + D++V YDGTVRN + +IQF YG D
Sbjct: 942 RRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDGMD 977
>G8B659_CANPC (tr|G8B659) DNA-directed RNA polymerase OS=Candida parapsilosis
(strain CDC 317 / ATCC MYA-4646) GN=CPAR2_110260 PE=3
SV=1
Length = 1446
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 99/217 (45%), Gaps = 25/217 (11%)
Query: 8 GFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIYN--ELVAQQLEKHMQDIELPAIK 65
GFS+G++D + + +K+ + + + QL +YN +L Q Q +E
Sbjct: 710 GFSIGINDVTPAHELKQKKELMVEQAYLKCDQLIDLYNRGKLETQPGCNEEQTLEAKIGG 769
Query: 66 FVSK-SSRLGD--------------MIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGL 110
+SK +GD M SK + V+Q + +GQQ+ + G G
Sbjct: 770 LLSKVREEVGDVCIRELDSLNAPLIMATCGSKGSTLNVSQMVAVVGQQI-ISGHRVPDGF 828
Query: 111 LEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSE 170
+ HF P ++ G +R FF GL P E L H+IS RE +V ++ +E
Sbjct: 829 QDRSLPHFT-----KNSKTPQSK-GFVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAE 882
Query: 171 PGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 207
G + + LM L D+ YD TVRN SN I+QF YG
Sbjct: 883 TGYMSRRLMKSLEDLSSQYDNTVRN-SSNGIVQFTYG 918
>M8C8K4_AEGTA (tr|M8C8K4) Uncharacterized protein OS=Aegilops tauschii
GN=F775_52270 PE=4 SV=1
Length = 1915
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 100/221 (45%), Gaps = 25/221 (11%)
Query: 4 IFSNGFSVGLHD-FSISGAVKRVTD---RNIGKVSPLLYQ-------------LRFIYNE 46
+ +GFS+G+ D + +G +K+++D + V L+ Q + +
Sbjct: 761 LLQHGFSIGIGDTIADAGTMKKISDTISKAKNDVDELIKQAHDKKLEPEPGRTMMESFEN 820
Query: 47 LVAQQLEKHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLY 106
V Q L K D A K + +S+ L M+ + SK + ++Q +GQQ V G+
Sbjct: 821 RVNQVLNKARDDAGSSAQKSLPESNNLKAMVTAGSKGSFINISQMTACVGQQ-NVEGKRI 879
Query: 107 SKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSR 166
G HF + Y G + + GL P E H++ RE ++ ++
Sbjct: 880 PFGFAGRTLPHFT------QNNYSPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 933
Query: 167 GLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 207
SE G + + L+ + D++V YDGTVRN + +IQF YG
Sbjct: 934 KTSETGYIQRRLVKAMEDIMVKYDGTVRNSVGD-VIQFLYG 973
>N0BKJ3_9EURY (tr|N0BKJ3) DNA-directed RNA polymerase, subunit A OS=Archaeoglobus
sulfaticallidus PM70-1 GN=Asulf_00702 PE=4 SV=1
Length = 876
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 106/226 (46%), Gaps = 26/226 (11%)
Query: 1 MESIFSNGFSVGLHDFSIS----GAVKRVTDRNIGKVSPLLYQ-----LRFIYNELVAQQ 51
+ +I + GFS G+ D I ++ V D KV L+ Q L + + +
Sbjct: 623 IRAIMNAGFSFGISDEEIPEEAVAQIREVLDEAEKKVDELIEQYKQGNLEPMPGRSIEET 682
Query: 52 LE-KHMQDIELP-------AIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRG 103
LE K MQ++ A K++ + M S ++ ++ +TQ +GQQ VRG
Sbjct: 683 LEMKIMQELGRARDKAGNIASKYLGMDNSAVIMAVSGARGSMLNLTQMAACIGQQ-SVRG 741
Query: 104 RLYSKGLL--EDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIM 161
+G SHFK GD S G +R + GL+P E H++ RE +
Sbjct: 742 ERIKRGYTYTNRTLSHFK-----PGD-LGSRARGFVRSSYKEGLNPIEFFFHAVGGREGL 795
Query: 162 VRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 207
V ++ S+ G L + L+ L+D+ V YDGTV+ SN I+QF+YG
Sbjct: 796 VDTAVRTSQSGYLQRRLINALQDLKVDYDGTVKEQTSNVIVQFKYG 841
>Q2TUN8_TAXCA (tr|Q2TUN8) DNA-directed RNA polymerase (Fragment) OS=Taxus
canadensis GN=rpb1 PE=2 SV=1
Length = 1013
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 96/221 (43%), Gaps = 25/221 (11%)
Query: 4 IFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQL--------------RFI---YNE 46
+ GFS+G+ D A V + I K + QL R + +
Sbjct: 597 LLQQGFSIGIGDTIADAATMEVINETISKAKHEVKQLIKAAQDKQLEAEPGRTMMESFEN 656
Query: 47 LVAQQLEKHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLY 106
V Q L K D A K +S+S+ L M+ + SK + ++Q +GQQ V G+
Sbjct: 657 RVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQ-NVEGKRI 715
Query: 107 SKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSR 166
G HF D P + G + + GL P E H++ RE ++ ++
Sbjct: 716 PYGFDGRTLPHFT-----KDDKGPESR-GFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 769
Query: 167 GLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 207
SE G + + L+ + D++V YDGTVRN + +IQF YG
Sbjct: 770 KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYG 809
>D2RUW1_HALTV (tr|D2RUW1) DNA-directed RNA polymerase OS=Haloterrigena turkmenica
(strain ATCC 51198 / DSM 5511 / NCIMB 13204 / VKM
B-1734) GN=Htur_0353 PE=3 SV=1
Length = 974
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 108/224 (48%), Gaps = 25/224 (11%)
Query: 1 MESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIY--NELVAQQLEKHMQD 58
M +I GFS+G+ D +I + D I + + +L Y NEL + +
Sbjct: 691 MRAIMHFGFSIGIDDETIPEEAQSRIDETIEDANDRVEELIEAYENNELESLPGRTIDET 750
Query: 59 IELPAIKFVSKS----SRLGD-----------MIDSKSKSALDKVTQQIGFLGQQLFVRG 103
+E+ ++ +S++ + D M +S ++ ++ +TQ G +GQQ VRG
Sbjct: 751 LEMKIMQTLSRARDNAGNIADEHFDDENPAVVMANSGARGSMLNLTQMAGAVGQQA-VRG 809
Query: 104 RLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVR 163
++G + SH Y+ + + +G + + GL P E H++ RE +V
Sbjct: 810 ERINRGYEDRTLSH------YEQNDLSAEAHGFVENSYTSGLTPREFFFHAMGGREGLVD 863
Query: 164 SSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 207
++ S+ G L + L+ L ++ YDGTVR+ S++IIQFE+G
Sbjct: 864 TAVRTSKSGYLQRRLINALHELETQYDGTVRD-SSDTIIQFEFG 906
>M0CJD0_9EURY (tr|M0CJD0) DNA-directed RNA polymerase OS=Haloterrigena salina JCM
13891 GN=C477_02579 PE=3 SV=1
Length = 974
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 108/224 (48%), Gaps = 25/224 (11%)
Query: 1 MESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIY--NELVAQQLEKHMQD 58
M +I GFS+G+ D +I + D I + + +L Y NEL + +
Sbjct: 691 MRAIMHFGFSIGIDDETIPEEAQSRIDETIEDANDRVEELIEAYENNELESLPGRTIDET 750
Query: 59 IELPAIKFVSKS----SRLGD-----------MIDSKSKSALDKVTQQIGFLGQQLFVRG 103
+E+ ++ +S++ + D M +S ++ ++ +TQ G +GQQ VRG
Sbjct: 751 LEMKIMQTLSRARDNAGNIADEHFDDENPAVVMANSGARGSMLNLTQMAGAVGQQA-VRG 809
Query: 104 RLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVR 163
++G + SH Y+ + + +G + + GL P E H++ RE +V
Sbjct: 810 ERINRGYEDRTLSH------YEQNDLSAEAHGFVENSYTSGLTPREFFFHAMGGREGLVD 863
Query: 164 SSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 207
++ S+ G L + L+ L ++ YDGTVR+ S++IIQFE+G
Sbjct: 864 TAVRTSKSGYLQRRLINALHELETQYDGTVRD-SSDTIIQFEFG 906
>K8ECL4_9CHLO (tr|K8ECL4) DNA-directed RNA polymerase OS=Bathycoccus prasinos
GN=Bathy03g01930 PE=3 SV=1
Length = 1499
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 73/144 (50%), Gaps = 8/144 (5%)
Query: 81 SKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGC 140
SK + ++Q + +GQQ V G G E HFK G+ P+A+ G +
Sbjct: 805 SKGSTINISQMMACVGQQA-VGGTRPPDGFFERSLPHFK-----RGEKTPAAK-GFVANS 857
Query: 141 FFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNS 200
F+ GL P E H+++ RE +V ++ +E G + + LM L D+ + YDGTVRN S
Sbjct: 858 FYSGLLPTEFFFHTMAGREGLVDTAVKTAETGYMSRRLMKALEDLSLGYDGTVRN-SSGD 916
Query: 201 IIQFEYGVKAGDKTRYLFPAGEPV 224
I+Q EYG + T GEPV
Sbjct: 917 IVQLEYGDDGMEPTLMEGSEGEPV 940
>N1R5D7_AEGTA (tr|N1R5D7) DNA-directed RNA polymerase II subunit RPB1 OS=Aegilops
tauschii GN=F775_15342 PE=4 SV=1
Length = 1905
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 100/228 (43%), Gaps = 29/228 (12%)
Query: 4 IFSNGFSVGLHD-------------------FSISGAVKRVTDRNIGKVSPLLYQLRFIY 44
+ NGFS+G+ D ++G +++ + + + P +
Sbjct: 727 LLQNGFSIGIGDTIADADTMEKINETIANAKIEVNGLIRQAQGKEL-EPEPGRTMMESFE 785
Query: 45 NELVAQQLEKHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGR 104
N V Q L K + A K +S+S+ L M+ + SK + ++Q +GQQ V G+
Sbjct: 786 NR-VNQVLNKARDESGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQ-NVEGK 843
Query: 105 LYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRS 164
G ++ HF D Y G + + GL P E H++ RE ++ +
Sbjct: 844 RIPFGFVDRTLPHFT------KDNYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDT 897
Query: 165 SRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGD 212
+ SE G + + L+ + D++V YDGTVRN + +IQF YG D
Sbjct: 898 AVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDGMD 944
>C5JRK1_AJEDS (tr|C5JRK1) DNA-directed RNA polymerase OS=Ajellomyces dermatitidis
(strain SLH14081) GN=BDBG_05195 PE=3 SV=1
Length = 1456
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 68/132 (51%), Gaps = 8/132 (6%)
Query: 76 MIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYG 135
M S SK + V Q + +GQQ+ + G+ G + HF P A+ G
Sbjct: 794 MATSGSKGSDINVAQMVALVGQQI-IGGQRVQDGFQDRTLPHFPKHARQ-----PPAK-G 846
Query: 136 LLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRN 195
+R FF GL P E L H+IS RE +V ++ +E G + + LM L D+ YD TVRN
Sbjct: 847 FVRNSFFSGLTPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSSRYDDTVRN 906
Query: 196 VCSNSIIQFEYG 207
SN I+QF+YG
Sbjct: 907 SSSN-IVQFQYG 917
>C5GRI8_AJEDR (tr|C5GRI8) DNA-directed RNA polymerase OS=Ajellomyces dermatitidis
(strain ER-3 / ATCC MYA-2586) GN=BDCG_06617 PE=3 SV=1
Length = 1456
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 68/132 (51%), Gaps = 8/132 (6%)
Query: 76 MIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYG 135
M S SK + V Q + +GQQ+ + G+ G + HF P A+ G
Sbjct: 794 MATSGSKGSDINVAQMVALVGQQI-IGGQRVQDGFQDRTLPHFPKHARQ-----PPAK-G 846
Query: 136 LLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRN 195
+R FF GL P E L H+IS RE +V ++ +E G + + LM L D+ YD TVRN
Sbjct: 847 FVRNSFFSGLTPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSSRYDDTVRN 906
Query: 196 VCSNSIIQFEYG 207
SN I+QF+YG
Sbjct: 907 SSSN-IVQFQYG 917
>B7SNX3_PERAE (tr|B7SNX3) DNA-directed RNA polymerase (Fragment) OS=Persea
americana GN=rpb1 PE=2 SV=1
Length = 1009
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 95/226 (42%), Gaps = 25/226 (11%)
Query: 4 IFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQL--------------RFI---YNE 46
+ NGFS+G+ D A + I K + L R + +
Sbjct: 593 LLQNGFSIGIGDTIADAATMEKINETILKAKSEVKDLIKAAQEKSLEAEPGRTMMESFEN 652
Query: 47 LVAQQLEKHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLY 106
V Q L K D A K +S+S+ L M+ + SK + ++Q +GQQ V G+
Sbjct: 653 RVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQ-NVEGKRI 711
Query: 107 SKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSR 166
G HF D Y G + + GL P E H++ RE ++ ++
Sbjct: 712 PYGFNGRTLPHFT------KDDYGPEXRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 765
Query: 167 GLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGD 212
SE G + + L+ + D++V YDGTVRN + +IQF YG D
Sbjct: 766 KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDGMD 810
>C7NTX8_HALUD (tr|C7NTX8) DNA-directed RNA polymerase OS=Halorhabdus utahensis
(strain DSM 12940 / JCM 11049 / AX-2) GN=Huta_0782 PE=3
SV=1
Length = 1013
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 108/223 (48%), Gaps = 27/223 (12%)
Query: 3 SIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQD--IE 60
+I GFS+G+ D SI A + + IG + +L Y + + L D +E
Sbjct: 736 TIMHFGFSIGIDDESIPPAAQEQVEEAIGSAYDRVQELIETYEQGDLESLPGRTVDETLE 795
Query: 61 LPAIKFVSKS-SRLGD--------------MIDSKSKSALDKVTQQIGFLGQQLFVRGRL 105
+ ++ + ++ GD M DS ++ ++ +TQ G +GQQ VRG
Sbjct: 796 MKIMQTLGQARDSAGDIAEDHFAEDNPAVVMADSGARGSMLNLTQMAGCVGQQA-VRGER 854
Query: 106 YSKGLLEDVASHFKLKCDYDGDGYPSAE-YGLLRGCFFHGLDPFEELVHSISTREIMVRS 164
++G + SHF+ + SAE +G + + GL P E H++ RE +V +
Sbjct: 855 INRGYEDRTLSHFE-------ENDLSAEAHGFVEHSYREGLGPKEFFFHAMGGREGLVDT 907
Query: 165 SRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 207
+ S+ G L + L+ L ++ YDGTVR+ S++++QFE+G
Sbjct: 908 AVRTSKSGYLQRRLINALSELETQYDGTVRD-TSDTVVQFEFG 949
>C5Y387_SORBI (tr|C5Y387) DNA-directed RNA polymerase OS=Sorghum bicolor
GN=Sb05g019520 PE=3 SV=1
Length = 1874
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 101/228 (44%), Gaps = 29/228 (12%)
Query: 4 IFSNGFSVGLHDF------------SISGA-------VKRVTDRNIGKVSPLLYQLRFIY 44
+ NGFS+G+ D +ISGA +K+ D + K P +
Sbjct: 675 LLQNGFSIGIGDMIADAATMADINKAISGAKDCVKKLIKQARDEQL-KAEPGHTMMESFE 733
Query: 45 NELVAQQLEKHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGR 104
N+ V + L K ++ +S+S+ L M+ + SK + ++Q +GQQ + G+
Sbjct: 734 NK-VNEALNKARDNVGSNVQNNLSESNNLKAMVSAGSKGSFINISQMAACVGQQ-NIEGK 791
Query: 105 LYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRS 164
G + HF D Y G + + GL P E H++ RE ++ +
Sbjct: 792 RIPFGFSDRTLPHFT------KDDYGPESRGFVENSYLQGLTPQEFFFHAMGGREGLIDT 845
Query: 165 SRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGD 212
+ SE G + + L+ + D++V YDGTVRN + ++QF YG D
Sbjct: 846 AVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VVQFIYGEDGMD 892
>M0VV76_HORVD (tr|M0VV76) DNA-directed RNA polymerase OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 927
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 89/187 (47%), Gaps = 7/187 (3%)
Query: 58 DIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASH 117
D++ + ++++ + M ++ SK ++ K QQ +G QL + AS
Sbjct: 729 DLQKMVQQHTARNNSMMIMTNAGSKGSMLKFVQQTACVGLQLPASRFPFRIPSELSCASW 788
Query: 118 FKLKCDYDGDGYPSAE-YGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFK 176
+ K + G+ Y ++R F GL+P E L+HSIS R S PGTL +
Sbjct: 789 NRHKSEGRGECLGGQNLYAVIRNSFAGGLNPLECLLHSISGRANFF--SENADVPGTLTR 846
Query: 177 NLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGDKTRYLFPAGE---PVGVLAATSMS 233
LM LRD+ V YDGTVR+ I+QF Y A D GE PVG AA S+S
Sbjct: 847 KLMYHLRDLYVAYDGTVRSSYGQQIMQFTYDT-AEDMCSDRNLEGELGAPVGSWAACSIS 905
Query: 234 NPAYKAV 240
AY A+
Sbjct: 906 EAAYGAL 912
>C5MI79_CANTT (tr|C5MI79) DNA-directed RNA polymerase (Fragment) OS=Candida
tropicalis (strain ATCC MYA-3404 / T1) GN=CTRG_05772
PE=3 SV=1
Length = 1159
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 99/217 (45%), Gaps = 25/217 (11%)
Query: 8 GFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIYN--ELVAQQLEKHMQDIELPAIK 65
GFS+G++D + + +K+ + + + QL +YN +L Q Q +E
Sbjct: 704 GFSIGINDVTPADELKQKKELMVEQAYLKCDQLIDLYNRGKLETQPGCNEEQTLEAKIGG 763
Query: 66 FVSK-SSRLGD--------------MIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGL 110
+SK +G+ M SK + V+Q + +GQQ+ + G G
Sbjct: 764 LLSKVREEVGEVCIRELDSLNAPLIMATCGSKGSTLNVSQMVAVVGQQI-ISGHRVPDGF 822
Query: 111 LEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSE 170
+ HF P ++ G +R FF GL P E L H+IS RE +V ++ +E
Sbjct: 823 QDRSLPHFT-----KNSKTPQSK-GFVRNSFFSGLTPPEFLFHAISGREGLVDTAVKTAE 876
Query: 171 PGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 207
G + + LM L D+ YD TVRN SN I+QF YG
Sbjct: 877 TGYMSRRLMKSLEDLSTQYDNTVRN-SSNGIVQFTYG 912
>A1YIA7_ISSOR (tr|A1YIA7) DNA-directed RNA polymerase (Fragment) OS=Issatchenkia
orientalis GN=RPB1 PE=3 SV=1
Length = 1647
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 104/229 (45%), Gaps = 27/229 (11%)
Query: 4 IFSNGFSVGLHDF--------SISGAVKRVTDR----------NIGKVSPLLYQLRFIYN 45
+ NGFS+G+ D +I+ +K D+ N+ + P + LR +
Sbjct: 580 LLHNGFSIGIGDAIADPETMKTITETIKEAKDKVQTVIREAQKNLLEAEPGM-TLRESFE 638
Query: 46 ELVAQQLEKHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRL 105
+ V++ L + A + S+ + M+ + SK + ++Q +GQQ+ V G+
Sbjct: 639 QKVSKILNEARDAAGKSAETSLKDSNNVKQMVTAGSKGSYINISQMSACVGQQI-VEGKR 697
Query: 106 YSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSS 165
+ G + HF D Y + G + + GL P E H+++ RE ++ ++
Sbjct: 698 INFGFADRSLPHFTT------DDYSAESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTA 751
Query: 166 RGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGDKT 214
+E G + + L+ L D++V YDGT RN + +IQF YG D T
Sbjct: 752 VKTAETGYIQRRLLKALEDIMVHYDGTTRNSLGD-VIQFIYGEDGLDAT 799
>M0MVU3_HALMO (tr|M0MVU3) DNA-directed RNA polymerase OS=Halococcus morrhuae DSM
1307 GN=C448_02311 PE=3 SV=1
Length = 985
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/225 (28%), Positives = 105/225 (46%), Gaps = 27/225 (12%)
Query: 1 MESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQD-- 58
M +I GFS+G+ D SIS A + D ++ + +L Y + L D
Sbjct: 699 MRAIMHFGFSIGIDDESISDAAEAQIDESMDNAYERVQELIDTYENDDLESLPGRTVDET 758
Query: 59 IELPAIKFVSKS-SRLGD--------------MIDSKSKSALDKVTQQIGFLGQQLFVRG 103
+E+ ++ + K+ GD M +S ++ ++ +TQ +GQQ VRG
Sbjct: 759 LEMKIMQTLGKARDSAGDIADEHFDDDNPAVIMAESGARGSMLNLTQMAACVGQQA-VRG 817
Query: 104 RLYSKGLLEDVASHFKLKCDYDGDGYPSAE-YGLLRGCFFHGLDPFEELVHSISTREIMV 162
++G SHFK G SAE +G + + GL P E H++ RE +V
Sbjct: 818 ERINRGYEGRTLSHFKP-------GDLSAEAHGFVEDSYRSGLTPREFFFHAMGGREGLV 870
Query: 163 RSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 207
++ S+ G L + L+ L ++ YDGTVR+ N I+QFE+G
Sbjct: 871 DTAVRTSKSGYLQRRLINALSELETQYDGTVRDTSDN-IVQFEFG 914
>M0MG30_9EURY (tr|M0MG30) DNA-directed RNA polymerase OS=Halococcus
saccharolyticus DSM 5350 GN=C449_15417 PE=3 SV=1
Length = 984
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 103/224 (45%), Gaps = 25/224 (11%)
Query: 1 MESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQD-- 58
M +I GFS+G+ D SI A + D +I + +L Y + L D
Sbjct: 698 MRAIMHFGFSIGIDDESIPAAAETQIDESIDNAYERIDELITTYENDELESLPGRTVDET 757
Query: 59 IELPAIKFVSKS-SRLGD--------------MIDSKSKSALDKVTQQIGFLGQQLFVRG 103
+E+ ++ + K+ GD M +S ++ ++ +TQ +GQQ VRG
Sbjct: 758 LEMKIMQTLGKARDSAGDIAEDHFAEDNPAVVMAESGARGSMLNLTQMAACVGQQA-VRG 816
Query: 104 RLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVR 163
++G + SH+K D + +G + + GL P E H++ RE +V
Sbjct: 817 ERINRGYEDRTLSHYK------PDDLSAEAHGFVEHSYRGGLTPREFFFHAMGGREGLVD 870
Query: 164 SSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 207
++ S+ G L + L+ L ++ YDGTVR+ N I+QFE+G
Sbjct: 871 TAVRTSKSGYLQRRLINALSELETQYDGTVRDTNDN-IVQFEFG 913
>B7SNW8_DRIWI (tr|B7SNW8) DNA-directed RNA polymerase (Fragment) OS=Drimys
winteri GN=rpb1 PE=2 SV=1
Length = 1010
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 95/226 (42%), Gaps = 25/226 (11%)
Query: 4 IFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFI-----------------YNE 46
+ NGFS+G+ D A I K + +L +
Sbjct: 594 LLQNGFSIGIGDTIADAATMDTISETISKAKNDVKELIMAAQDKALEAEPGRTMTESFEN 653
Query: 47 LVAQQLEKHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLY 106
V Q L K D A +S+S+ L M+ + SK + ++Q +GQQ V G+
Sbjct: 654 RVNQVLNKARDDAGSSAQNSLSESNNLKAMVTAGSKGSFINISQMTACVGQQ-NVEGKRI 712
Query: 107 SKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSR 166
G + HF D +G S G + + GL P E H++ RE ++ ++
Sbjct: 713 PYGFIGRTLPHFT----KDDNGPES--RGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 766
Query: 167 GLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGD 212
SE G + + L+ + D++V YDGTVRN + +IQF YG D
Sbjct: 767 KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDGMD 811
>C0NZL8_AJECG (tr|C0NZL8) DNA-directed RNA polymerase OS=Ajellomyces capsulata
(strain G186AR / H82 / ATCC MYA-2454 / RMSCC 2432)
GN=HCBG_08598 PE=3 SV=1
Length = 1456
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 67/132 (50%), Gaps = 8/132 (6%)
Query: 76 MIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYG 135
M S SK + V Q + +GQQ+ R+ G + HF P A+ G
Sbjct: 794 MATSGSKGSDINVAQMVALVGQQIIGNQRVQD-GFQDRTLPHFPKHARQ-----PPAK-G 846
Query: 136 LLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRN 195
+R FF GL P E L H+IS RE +V ++ +E G + + LM L D+ YD TVRN
Sbjct: 847 FVRNSFFSGLTPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSTRYDDTVRN 906
Query: 196 VCSNSIIQFEYG 207
SN I+QF+YG
Sbjct: 907 SSSN-IVQFQYG 917
>F0UGW8_AJEC8 (tr|F0UGW8) DNA-directed RNA polymerase OS=Ajellomyces capsulata
(strain H88) GN=HCEG_04422 PE=3 SV=1
Length = 1456
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 67/132 (50%), Gaps = 8/132 (6%)
Query: 76 MIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYG 135
M S SK + V Q + +GQQ+ R+ G + HF P A+ G
Sbjct: 794 MATSGSKGSDINVAQMVALVGQQIIGNQRV-QDGFQDRTLPHFPKHARQ-----PPAK-G 846
Query: 136 LLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRN 195
+R FF GL P E L H+IS RE +V ++ +E G + + LM L D+ YD TVRN
Sbjct: 847 FVRNSFFSGLTPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSTRYDDTVRN 906
Query: 196 VCSNSIIQFEYG 207
SN I+QF+YG
Sbjct: 907 SSSN-IVQFQYG 917
>Q4N1T2_THEPA (tr|Q4N1T2) DNA-directed RNA polymerase OS=Theileria parva
GN=TP04_0648 PE=3 SV=1
Length = 1617
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 67/132 (50%), Gaps = 8/132 (6%)
Query: 76 MIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYG 135
M +S +K AL + Q + +GQQ V G+ G + HF + C + G
Sbjct: 859 MFNSGAKGALINIAQMVACVGQQ-NVSGQRIQNGFIGRTLPHFTMGCK------DAKSRG 911
Query: 136 LLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRN 195
+ FF GL+P E H++S RE ++ ++ SE G + + LM ++ D+ VCYD +VR
Sbjct: 912 FVANSFFTGLEPEEFFFHTMSGREGLIDTAVKTSETGYMQRRLMKVMEDLSVCYDYSVR- 970
Query: 196 VCSNSIIQFEYG 207
I+QF YG
Sbjct: 971 TSDGQIVQFLYG 982
>D8J909_HALJB (tr|D8J909) DNA-directed RNA polymerase OS=Halalkalicoccus jeotgali
(strain DSM 18796 / CECT 7217 / JCM 14584 / KCTC 4019 /
B3) GN=HacjB3_14485 PE=3 SV=1
Length = 986
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 110/249 (44%), Gaps = 27/249 (10%)
Query: 1 MESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQD-- 58
M +I GFS+G+ D SI A D I + +L Y + L D
Sbjct: 701 MRAIMHFGFSIGIDDESIPDAAGEQIDEAIQNAYDRVQELIETYENGDLESLPGRTVDET 760
Query: 59 IELPAIKFVSKS-SRLGD--------------MIDSKSKSALDKVTQQIGFLGQQLFVRG 103
+E+ ++ + K+ GD M +S ++ +L +TQ G +GQQ VRG
Sbjct: 761 LEMKIMQTLGKARDSAGDIAEDHFADDNPAVIMAESGARGSLLNLTQMAGCVGQQA-VRG 819
Query: 104 RLYSKGLLEDVASHFKLKCDYDGDGYPSAE-YGLLRGCFFHGLDPFEELVHSISTREIMV 162
++G SH++ +G SAE +G + + GL P E H++ RE +V
Sbjct: 820 ERINRGYEGRTLSHYQ-------EGDLSAEAHGFVENSYRAGLTPREFFFHAMGGREGLV 872
Query: 163 RSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGDKTRYLFPAGE 222
++ S+ G L + L+ L ++ YDGTVR+ S+ I+QFE+G R
Sbjct: 873 DTAVRTSKSGYLQRRLINALSELETQYDGTVRD-TSDKIVQFEFGEDGTSPVRVSSDEDN 931
Query: 223 PVGVLAATS 231
P+ V S
Sbjct: 932 PIDVEGIAS 940
>I7CNF2_NATSJ (tr|I7CNF2) DNA-directed RNA polymerase OS=Natrinema sp. (strain
J7-2) GN=NJ7G_0208 PE=3 SV=1
Length = 975
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 102/225 (45%), Gaps = 27/225 (12%)
Query: 1 MESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQDIE 60
M +I GFS+G+ D +I + D I + + +L Y + L D E
Sbjct: 692 MRAIMHFGFSIGIDDETIPEEAQSRIDETIADANDRVEELIEAYERGELESLPGRTID-E 750
Query: 61 LPAIKFVSKSSRLGD------------------MIDSKSKSALDKVTQQIGFLGQQLFVR 102
+K + SR D M +S ++ ++ +TQ G +GQQ VR
Sbjct: 751 TLEMKIMQTLSRARDNAGNIADEHFQDDNPAVVMANSGARGSMLNLTQMAGAVGQQA-VR 809
Query: 103 GRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMV 162
G ++G + SH Y+ + + +G + + GL P E H++ RE +V
Sbjct: 810 GERINRGYEDRTLSH------YEPNDLSAEAHGFVENSYTSGLTPREFFFHAMGGREGLV 863
Query: 163 RSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 207
++ S+ G L + L+ L ++ YDGTVR+ S++I+QFE+G
Sbjct: 864 DTAVRTSKSGYLQRRLINALSELETQYDGTVRD-TSDTIVQFEFG 907
>A5DM42_PICGU (tr|A5DM42) DNA-directed RNA polymerase OS=Meyerozyma
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 /
JCM 1539 / NBRC 10279 / NRRL Y-324) GN=PGUG_04343 PE=3
SV=2
Length = 1379
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 102/217 (47%), Gaps = 25/217 (11%)
Query: 8 GFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIYN--ELVAQQLEKHMQDIELPAIK 65
GFS+G++D + +KR + + + +L +YN +L Q Q +E
Sbjct: 635 GFSIGINDVTPGTDLKRKKELMVEQAYLKCDELIDLYNRGKLETQPGCNEEQTLEAKIGG 694
Query: 66 FVSK-SSRLGDM----IDSK----------SKSALDKVTQQIGFLGQQLFVRGRLYSKGL 110
+SK ++G++ +DS SK + V+Q + +GQQ+ + G G
Sbjct: 695 LLSKVREQVGEVCINELDSANAPLIMATCGSKGSTLNVSQMVAVVGQQI-ISGNRVPDGF 753
Query: 111 LEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSE 170
+ HF P ++ G +R FF GL P E L H+IS RE +V ++ +E
Sbjct: 754 QDRSLPHFT-----KNSKTPQSK-GFVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAE 807
Query: 171 PGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 207
G + + LM L D+ YD TVRN SN I+QF YG
Sbjct: 808 TGYMSRRLMKSLEDLSAQYDNTVRN-SSNGIVQFTYG 843
>L0ABG6_CALLD (tr|L0ABG6) DNA-directed RNA polymerase OS=Caldisphaera lagunensis
(strain DSM 15908 / JCM 11604 / IC-154) GN=Calag_1500
PE=3 SV=1
Length = 888
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 80/160 (50%), Gaps = 8/160 (5%)
Query: 48 VAQQLEKHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYS 107
+ Q+L+K D AI ++ + M + ++ + +TQ LGQQ VRG+ S
Sbjct: 710 IIQRLQKLRDDAGKLAISYMDPFNNAFIMARTGARGSDINITQMAAMLGQQT-VRGKRIS 768
Query: 108 KGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSRG 167
+G FK GD P A G + F GL P+E H+ RE +V ++
Sbjct: 769 RGFRTRTLPQFK-----PGDLSPEAR-GFIISNFRLGLKPYEVFFHAAGGREGLVDTAVK 822
Query: 168 LSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 207
S+ G + + L+ L+D+ V YDGTVR+ N I+QF+YG
Sbjct: 823 TSQSGYMQRRLINALQDLYVSYDGTVRDSVGN-IVQFKYG 861
>Q4U940_THEAN (tr|Q4U940) DNA-directed RNA polymerase OS=Theileria annulata
GN=TA10710 PE=3 SV=1
Length = 1648
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 67/132 (50%), Gaps = 8/132 (6%)
Query: 76 MIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYG 135
M +S +K AL + Q + +GQQ V G+ G + HF + C + G
Sbjct: 868 MFNSGAKGALINIAQMVACVGQQ-NVSGQRIQNGFIGRTLPHFTMGCK------DAKSRG 920
Query: 136 LLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRN 195
+ FF GL+P E H++S RE ++ ++ SE G + + LM ++ D+ VCYD +VR
Sbjct: 921 FVANSFFTGLEPEEFFFHTMSGREGLIDTAVKTSETGYMQRRLMKVMEDLSVCYDYSVR- 979
Query: 196 VCSNSIIQFEYG 207
I+QF YG
Sbjct: 980 TSDGQIVQFLYG 991
>B7SNX5_SARHE (tr|B7SNX5) DNA-directed RNA polymerase (Fragment) OS=Saruma henryi
GN=rpb1 PE=2 SV=1
Length = 1009
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 98/226 (43%), Gaps = 25/226 (11%)
Query: 4 IFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQL--------------RFI---YNE 46
+ N FS+G+ D A + I K + +L R + +
Sbjct: 593 LLQNAFSIGIGDTIADAATMEKINDTITKAKNEVKELIKAAHEKQLEAEPGRTMMESFEN 652
Query: 47 LVAQQLEKHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLY 106
V Q L K D A K +S+S+ L M+ + SK + ++Q +GQQ V G+
Sbjct: 653 RVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQ-NVEGKRI 711
Query: 107 SKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSR 166
G + HF D +G S G + + GL P E H++ RE ++ ++
Sbjct: 712 PYGFINRTLPHFT----QDDNGPESR--GFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 765
Query: 167 GLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGD 212
SE G + + L+ + D++V YDGTVRN + +IQF YG D
Sbjct: 766 KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDGMD 810
>K7K465_SOYBN (tr|K7K465) DNA-directed RNA polymerase OS=Glycine max PE=3 SV=1
Length = 1827
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 96/226 (42%), Gaps = 25/226 (11%)
Query: 4 IFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQL--------------RFIYNEL-- 47
+ N FS+G+ D + ++ I + QL R + +
Sbjct: 675 LLQNAFSIGIGDTIADASTMETINQTISAAKEKVKQLIREAHEKKLEAEPGRSMMDSFEN 734
Query: 48 -VAQQLEKHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLY 106
V Q L + D A K +S+S+ L M+ + SK + ++Q +GQQ V G+
Sbjct: 735 RVNQTLNRARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQ-NVEGKRI 793
Query: 107 SKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSR 166
G ++ HF D G + + GL P E H++ RE ++ ++
Sbjct: 794 PYGFIDRTLPHFT------KDDLGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 847
Query: 167 GLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGD 212
SE G + + L+ + D++V YDGTVRN + +IQF YG D
Sbjct: 848 KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDGMD 892
>L9YYH0_9EURY (tr|L9YYH0) DNA-directed RNA polymerase OS=Natrinema gari JCM 14663
GN=C486_12952 PE=3 SV=1
Length = 975
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 102/225 (45%), Gaps = 27/225 (12%)
Query: 1 MESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQDIE 60
M +I GFS+G+ D +I + D I + + +L Y + L D E
Sbjct: 692 MRAIMHFGFSIGIDDETIPEEAQSRIDETIADANDRVEELIEAYERGELESLPGRTID-E 750
Query: 61 LPAIKFVSKSSRLGD------------------MIDSKSKSALDKVTQQIGFLGQQLFVR 102
+K + SR D M +S ++ ++ +TQ G +GQQ VR
Sbjct: 751 TLEMKIMQTLSRARDNAGNIADEHFQDDNPAVVMANSGARGSMLNLTQMAGAVGQQA-VR 809
Query: 103 GRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMV 162
G ++G + SH Y+ + + +G + + GL P E H++ RE +V
Sbjct: 810 GERINRGYEDRTLSH------YEPNDLSAEAHGFVENSYTSGLTPREFFFHAMGGREGLV 863
Query: 163 RSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 207
++ S+ G L + L+ L ++ YDGTVR+ S++I+QFE+G
Sbjct: 864 DTAVRTSKSGYLQRRLINALSELETQYDGTVRD-TSDTIVQFEFG 907
>Q1L5Y7_ANTMA (tr|Q1L5Y7) DNA-directed RNA polymerase (Fragment) OS=Antirrhinum
majus GN=RPB1 PE=2 SV=1
Length = 780
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 78/164 (47%), Gaps = 8/164 (4%)
Query: 44 YNELVAQQLEKHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRG 103
+ V Q L K D A K +S+ + L M+ + SK + ++Q +GQQ V G
Sbjct: 409 FENRVNQVLNKARDDAGSSAQKSLSEHNNLKAMVTAGSKGSFINISQMTACVGQQ-NVEG 467
Query: 104 RLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVR 163
+ G ++ HF D Y G + + GL P E H++ RE ++
Sbjct: 468 KRIPFGFIDRTLPHFT------KDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLID 521
Query: 164 SSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 207
++ SE G + + L+ + D++V YDGTVRN + +IQF YG
Sbjct: 522 TAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYG 564
>R4XCU7_9ASCO (tr|R4XCU7) Uncharacterized protein OS=Taphrina deformans PYCC 5710
GN=TAPDE_004012 PE=4 SV=1
Length = 1405
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 74/149 (49%), Gaps = 9/149 (6%)
Query: 76 MIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYG 135
M SK + V+Q + +GQQ+ + G G + HF + PS G
Sbjct: 777 MATCGSKGSKINVSQMVSCVGQQI-ISGSRVPNGFQDRSLPHFP----KNSKNPPS--RG 829
Query: 136 LLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRN 195
+R F+ GL P E L H+IS RE +V ++ +E G + + LM L D+ YDGTVRN
Sbjct: 830 FVRNSFYTGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSAQYDGTVRN 889
Query: 196 VCSNSIIQFEYGVKAGDKTRYLFPAGEPV 224
S+ I+QF YG D T YL G PV
Sbjct: 890 -SSSGIVQFTYGDDGLDPT-YLEGDGYPV 916
>M0VV75_HORVD (tr|M0VV75) DNA-directed RNA polymerase OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 741
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 89/187 (47%), Gaps = 7/187 (3%)
Query: 58 DIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASH 117
D++ + ++++ + M ++ SK ++ K QQ +G QL + AS
Sbjct: 543 DLQKMVQQHTARNNSMMIMTNAGSKGSMLKFVQQTACVGLQLPASRFPFRIPSELSCASW 602
Query: 118 FKLKCDYDGDGYPSAE-YGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFK 176
+ K + G+ Y ++R F GL+P E L+HSIS R S PGTL +
Sbjct: 603 NRHKSEGRGECLGGQNLYAVIRNSFAGGLNPLECLLHSISGRANFF--SENADVPGTLTR 660
Query: 177 NLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGDKTRYLFPAGE---PVGVLAATSMS 233
LM LRD+ V YDGTVR+ I+QF Y A D GE PVG AA S+S
Sbjct: 661 KLMYHLRDLYVAYDGTVRSSYGQQIMQFTYDT-AEDMCSDRNLEGELGAPVGSWAACSIS 719
Query: 234 NPAYKAV 240
AY A+
Sbjct: 720 EAAYGAL 726
>F8D4N2_HALXS (tr|F8D4N2) DNA-directed RNA polymerase OS=Halopiger xanaduensis
(strain DSM 18323 / JCM 14033 / SH-6) GN=Halxa_1734 PE=3
SV=1
Length = 975
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 107/224 (47%), Gaps = 25/224 (11%)
Query: 1 MESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIY--NELVAQQLEKHMQD 58
M +I GFS+G+ D +I + D I + +L Y NEL + +
Sbjct: 690 MRAIMHFGFSIGIDDETIPTEAQERIDETIDDAYDRVQELIEAYENNELESLPGRTIDET 749
Query: 59 IELPAIKFVSKS----SRLGD-----------MIDSKSKSALDKVTQQIGFLGQQLFVRG 103
+E+ ++ +S++ + D M +S ++ ++ +TQ G +GQQ VRG
Sbjct: 750 LEMKIMQTLSRARDNAGNIADEHFDDENPAVVMANSGARGSMLNLTQMAGAVGQQA-VRG 808
Query: 104 RLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVR 163
++G + SH Y+ + + +G + + GL P E H++ RE +V
Sbjct: 809 ERINRGYEDRTLSH------YEPNDLSAEAHGFVENSYTSGLTPREFFFHAMGGREGLVD 862
Query: 164 SSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 207
++ S+ G L + L+ L ++ YDGTVR+ S++I+QFE+G
Sbjct: 863 TAVRTSKSGYLQRRLINALSELETQYDGTVRD-TSDTIVQFEFG 905
>K9GE05_PEND1 (tr|K9GE05) DNA-directed RNA polymerase OS=Penicillium digitatum
(strain Pd1 / CECT 20795) GN=PDIP_23920 PE=3 SV=1
Length = 2075
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 76/144 (52%), Gaps = 8/144 (5%)
Query: 64 IKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCD 123
IK +SK + M S SK + V+Q + +GQQ+ + G+ G + HF
Sbjct: 1410 IKQLSKYNSPLIMATSGSKGSSINVSQMVALVGQQI-IGGQRVQDGFQDRTLPHFP---- 1464
Query: 124 YDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILR 183
+ PS G +R FF GL+P E + H++S RE +V ++ +E G + + LM L
Sbjct: 1465 KNARQPPSK--GFVRNSFFSGLEPPEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLE 1522
Query: 184 DVVVCYDGTVRNVCSNSIIQFEYG 207
D+ YD TVRN S +I+QF+YG
Sbjct: 1523 DLSSMYDDTVRN-SSAAIVQFQYG 1545
>K9G2F7_PEND2 (tr|K9G2F7) DNA-directed RNA polymerase OS=Penicillium digitatum
(strain PHI26 / CECT 20796) GN=PDIG_21640 PE=3 SV=1
Length = 2075
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 76/144 (52%), Gaps = 8/144 (5%)
Query: 64 IKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCD 123
IK +SK + M S SK + V+Q + +GQQ+ + G+ G + HF
Sbjct: 1410 IKQLSKYNSPLIMATSGSKGSSINVSQMVALVGQQI-IGGQRVQDGFQDRTLPHFP---- 1464
Query: 124 YDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILR 183
+ PS G +R FF GL+P E + H++S RE +V ++ +E G + + LM L
Sbjct: 1465 KNARQPPSK--GFVRNSFFSGLEPPEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLE 1522
Query: 184 DVVVCYDGTVRNVCSNSIIQFEYG 207
D+ YD TVRN S +I+QF+YG
Sbjct: 1523 DLSSMYDDTVRN-SSAAIVQFQYG 1545
>D8SYZ7_SELML (tr|D8SYZ7) DNA-directed RNA polymerase OS=Selaginella
moellendorffii GN=SELMODRAFT_128226 PE=3 SV=1
Length = 1797
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 97/226 (42%), Gaps = 25/226 (11%)
Query: 4 IFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIYNE----------------- 46
+ +GFS+G+ D A + I K + L I E
Sbjct: 686 LLQHGFSIGIGDTIADSATMEKINDTIFKAKNEVKDLIKIAQEKQLESQPGRTMMESFEN 745
Query: 47 LVAQQLEKHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLY 106
V Q L + + A K +S+S+ + M+ + SK + ++Q I +GQQ V G+
Sbjct: 746 RVNQVLNRARDEAGSSAQKSLSESNNVKAMVTAGSKGSFINISQMIACVGQQ-NVEGKRI 804
Query: 107 SKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSR 166
G ++ HF D Y G + + GL P E H++ RE ++ ++
Sbjct: 805 PFGFIDRTLPHFT------KDDYGPESRGFVENSYLRGLTPQEFYFHAMGGREGLIDTAV 858
Query: 167 GLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGD 212
SE G + + L+ + DV+V YDGTVRN + +IQF YG D
Sbjct: 859 KTSETGYIQRRLVKAMEDVMVKYDGTVRNSLGD-VIQFLYGEDGMD 903
>Q0CS43_ASPTN (tr|Q0CS43) DNA-directed RNA polymerase OS=Aspergillus terreus
(strain NIH 2624 / FGSC A1156) GN=ATEG_03491 PE=3 SV=1
Length = 1450
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 70/132 (53%), Gaps = 8/132 (6%)
Query: 76 MIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYG 135
M S SK + V+Q + +GQQ+ + G+ G + HF + PS G
Sbjct: 795 MATSGSKGSSINVSQMVALVGQQI-IGGQRVQDGFQDRTLPHFP----KNARQPPSK--G 847
Query: 136 LLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRN 195
+R FF GL+P E + H++S RE +V ++ +E G + + LM L D+ YD TVRN
Sbjct: 848 FVRNSFFSGLEPTEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSSKYDDTVRN 907
Query: 196 VCSNSIIQFEYG 207
S SI+QF+YG
Sbjct: 908 -SSGSIVQFQYG 918
>B8NTG3_ASPFN (tr|B8NTG3) DNA-directed RNA polymerase OS=Aspergillus flavus
(strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722
/ SRRC 167) GN=AFLA_098030 PE=3 SV=1
Length = 1436
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 70/132 (53%), Gaps = 8/132 (6%)
Query: 76 MIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYG 135
M S SK + V+Q + +GQQ+ + G+ G + HF + PS G
Sbjct: 795 MATSGSKGSSINVSQMVALVGQQI-IGGQRVQDGFQDRTLPHFP----KNARQPPSK--G 847
Query: 136 LLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRN 195
+R FF GL+P+E + H++S RE +V ++ +E G + + LM L D+ YD TVRN
Sbjct: 848 FVRNSFFSGLEPYEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSSRYDDTVRN 907
Query: 196 VCSNSIIQFEYG 207
S I+QF+YG
Sbjct: 908 -SSGHIVQFQYG 918
>A9U396_PHYPA (tr|A9U396) DNA-directed RNA polymerase OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_101222 PE=3 SV=1
Length = 1742
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 96/226 (42%), Gaps = 25/226 (11%)
Query: 4 IFSNGFSVGLHDFSISGAVKRVTDRNIGK----VSPLLYQ-------------LRFIYNE 46
+ GFS+G+ D A + I K V L+ + ++ +
Sbjct: 678 LLQQGFSIGIGDTIADAATMEKINETITKAKHDVKDLIKKAQDKQLEAQPGRTMKESFEN 737
Query: 47 LVAQQLEKHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLY 106
V L K D A K +++S+ L M+ + SK ++Q +GQQ V G+
Sbjct: 738 RVNGILNKARDDAGASAQKSLAESNNLKAMVTAGSKGTFINISQMTACVGQQ-NVEGKRI 796
Query: 107 SKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSR 166
G ++ HF D Y G + + GL P E H++ RE ++ ++
Sbjct: 797 PYGFVDRTLPHFT------KDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 850
Query: 167 GLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGD 212
SE G + + L+ + DV+V YDGTVRN + +IQF YG D
Sbjct: 851 KTSETGYIQRRLVKAMEDVMVKYDGTVRNSLGD-VIQFLYGEDGMD 895
>M0EZI3_9EURY (tr|M0EZI3) DNA-directed RNA polymerase OS=Halorubrum coriense DSM
10284 GN=C464_00449 PE=3 SV=1
Length = 970
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 103/224 (45%), Gaps = 25/224 (11%)
Query: 1 MESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQD-- 58
M +I + GFS+G+ D SI A + D I + +L Y + L D
Sbjct: 685 MRAIMNFGFSIGIDDESIPPAAEEQVDEAIESAYDRVQELIETYEAGELESLPGRGVDET 744
Query: 59 IELPAIKFVSKS---------SRLGD------MIDSKSKSALDKVTQQIGFLGQQLFVRG 103
+E+ ++ + K+ GD M S ++ ++ +TQ G +GQQ VRG
Sbjct: 745 LEMKIMQTLGKARDSAGEIADQHFGDDNPAVVMARSGARGSMLNLTQMAGSVGQQA-VRG 803
Query: 104 RLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVR 163
++G + SH++ D S +G + + GL P E H++ RE +V
Sbjct: 804 ERINRGYEDRTLSHYRP------DDLSSEAHGFVENSYRGGLTPQEFFFHAMGGREGLVD 857
Query: 164 SSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 207
++ S+ G L + L+ L ++ YDGTVR+ S I+QFE+G
Sbjct: 858 TAVRTSKSGYLQRRLINALSELEAQYDGTVRD-TSGRIVQFEFG 900
>I7I9Q3_BABMI (tr|I7I9Q3) DNA-directed RNA polymerase OS=Babesia microti strain
RI GN=BBM_III06210 PE=3 SV=1
Length = 1459
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 66/132 (50%), Gaps = 8/132 (6%)
Query: 76 MIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYG 135
M +S +K +L + Q I +GQQ V G+ G + HF++ D G
Sbjct: 760 MFNSGAKGSLINIAQMIACVGQQ-NVSGQRIQNGFVNRSLPHFEM------DSLEPKSRG 812
Query: 136 LLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRN 195
+ FF GLDP E H++S RE ++ ++ +E G + + LM L D+ VCYD TVR
Sbjct: 813 FVANSFFTGLDPQEFFFHTMSGREGLIDTAVKTAETGYMQRRLMKALEDLSVCYDHTVR- 871
Query: 196 VCSNSIIQFEYG 207
++QF YG
Sbjct: 872 TSDGQVVQFLYG 883
>Q2U3T5_ASPOR (tr|Q2U3T5) DNA-directed RNA polymerase OS=Aspergillus oryzae
(strain ATCC 42149 / RIB 40) GN=AO090020000625 PE=3 SV=1
Length = 1447
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 70/132 (53%), Gaps = 8/132 (6%)
Query: 76 MIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYG 135
M S SK + V+Q + +GQQ+ + G+ G + HF + PS G
Sbjct: 795 MATSGSKGSSINVSQMVALVGQQI-IGGQRVQDGFQDRTLPHFP----KNARQPPSK--G 847
Query: 136 LLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRN 195
+R FF GL+P+E + H++S RE +V ++ +E G + + LM L D+ YD TVRN
Sbjct: 848 FVRNSFFSGLEPYEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSSRYDDTVRN 907
Query: 196 VCSNSIIQFEYG 207
S I+QF+YG
Sbjct: 908 -SSGHIVQFQYG 918
>I7ZWF4_ASPO3 (tr|I7ZWF4) DNA-directed RNA polymerase OS=Aspergillus oryzae
(strain 3.042) GN=Ao3042_07380 PE=3 SV=1
Length = 1447
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 70/132 (53%), Gaps = 8/132 (6%)
Query: 76 MIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYG 135
M S SK + V+Q + +GQQ+ + G+ G + HF + PS G
Sbjct: 795 MATSGSKGSSINVSQMVALVGQQI-IGGQRVQDGFQDRTLPHFP----KNARQPPSK--G 847
Query: 136 LLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRN 195
+R FF GL+P+E + H++S RE +V ++ +E G + + LM L D+ YD TVRN
Sbjct: 848 FVRNSFFSGLEPYEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSSRYDDTVRN 907
Query: 196 VCSNSIIQFEYG 207
S I+QF+YG
Sbjct: 908 -SSGHIVQFQYG 918
>G1X896_ARTOA (tr|G1X896) DNA-directed RNA polymerase OS=Arthrobotrys oligospora
(strain ATCC 24927 / CBS 115.81 / DSM 1491)
GN=AOL_s00075g95 PE=3 SV=1
Length = 1442
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 70/132 (53%), Gaps = 8/132 (6%)
Query: 76 MIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYG 135
M +S SK + V+Q + +GQQ+ + G+ G + HF+ + PS G
Sbjct: 791 MANSGSKGSKINVSQMVACVGQQI-ISGKRVPNGFQDRSLPHFQ----KNSKEPPSK--G 843
Query: 136 LLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRN 195
+R FF GL P E L H+IS RE +V ++ +E G + + LM L D+ YD TVRN
Sbjct: 844 FVRNSFFSGLTPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSAQYDHTVRN 903
Query: 196 VCSNSIIQFEYG 207
S ++QF+YG
Sbjct: 904 -SSAGVVQFQYG 914
>M8C8M0_AEGTA (tr|M8C8M0) DNA-directed RNA polymerase II subunit RPB1 OS=Aegilops
tauschii GN=F775_20293 PE=4 SV=1
Length = 1847
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 105/227 (46%), Gaps = 27/227 (11%)
Query: 4 IFSNGFSVGLHD-FSISGAVKRVTDRNIGK----VSPLLYQLR-------------FIYN 45
+ +GFS+G+ D + +G +K+++D I K V+ L+ + R +
Sbjct: 679 LLQHGFSIGIGDTIADAGTMKKISD-TISKAQDDVNELIKEARDNKLEPEPGRTMMESFE 737
Query: 46 ELVAQQLEKHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRL 105
V Q L K D A + +S+S+ L M+ + SK + ++Q +GQQ V G+
Sbjct: 738 NKVNQVLNKARDDSGSSAQQSLSESNNLKAMVTAGSKGSFINISQMTACVGQQ-NVEGKR 796
Query: 106 YSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSS 165
G HF D P + G + + GL P E H++ RE ++ ++
Sbjct: 797 IPFGFAGRTLPHFT-----QNDDSPESR-GFVENSYLRGLTPQEFFFHAMGGREGLIDTA 850
Query: 166 RGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGD 212
SE G + + L+ + D++V YDGTVRN + +IQF YG D
Sbjct: 851 VKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDGMD 896
>A5E7R0_LODEL (tr|A5E7R0) DNA-directed RNA polymerase OS=Lodderomyces
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 /
NBRC 1676 / NRRL YB-4239) GN=LELG_05649 PE=3 SV=1
Length = 1450
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 67/132 (50%), Gaps = 8/132 (6%)
Query: 76 MIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYG 135
M SK ++ V+Q + +GQQ+ + G G + HF P ++ G
Sbjct: 795 MATCGSKGSIVNVSQMVAVVGQQI-ISGHRVPDGFQDRSLPHFT-----KNSKTPQSK-G 847
Query: 136 LLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRN 195
+R FF GL P E L H+IS RE +V ++ +E G + + LM L D+ YD TVRN
Sbjct: 848 FVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSAQYDDTVRN 907
Query: 196 VCSNSIIQFEYG 207
SN I+QF YG
Sbjct: 908 -SSNGIVQFTYG 918
>J8Q283_SACAR (tr|J8Q283) DNA-directed RNA polymerase OS=Saccharomyces arboricola
(strain H-6 / AS 2.3317 / CBS 10644) GN=SU7_3260 PE=3
SV=1
Length = 1460
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 83/306 (27%), Positives = 127/306 (41%), Gaps = 38/306 (12%)
Query: 8 GFSVGLHDFSISGAVKRVTDRNIG----KVSPLLYQLRFIYNELVAQQLEKHMQDIELPA 63
GFS+G++D + + +K+ + + K L+ + F EL Q Q +E
Sbjct: 709 GFSIGINDVTPADDLKQKKEELVEIAYRKCDELITE--FNRGELETQPGCNEEQTLEAKI 766
Query: 64 IKFVSK-SSRLGD--------------MIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSK 108
F+SK +GD M SK + V+Q + +GQQ+ + G
Sbjct: 767 GGFLSKVREEVGDVCINELDNWNAPLIMATCGSKGSTLNVSQMVAVVGQQI-ISGNRVPD 825
Query: 109 GLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGL 168
G + HF P ++ G +R FF GL P E L H+IS RE +V ++
Sbjct: 826 GFQDRSLPHFP-----KNSKTPQSK-GFVRNSFFSGLSPPEFLFHAISGREGLVDTAVKT 879
Query: 169 SEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGDKTRYLFPAGEPVGVLA 228
+E G + + LM L D+ YD TVR +N I+QF YG GD L G V
Sbjct: 880 AETGYMSRRLMKSLEDLSCQYDNTVR-TSANGIVQFTYG---GDGLDPLEMEGNAQPVNF 935
Query: 229 ATSMSNPAYKAVLDASPSSSCSWELMKEILLCKVNFRNEPIDRRVILYLNDCDCGRRYCR 288
S + AY D + +MK N P++ R+I Y N + +
Sbjct: 936 NRSWDH-AYNITFDNKDEGLLPYAIMK-----TANEVLRPLEERLIRYDNSGCLVKAEDK 989
Query: 289 ENAAYI 294
+ A Y+
Sbjct: 990 DKAEYV 995
>M3B0A6_9PEZI (tr|M3B0A6) DNA-directed RNA polymerase OS=Pseudocercospora
fijiensis CIRAD86 GN=MYCFIDRAFT_58269 PE=3 SV=1
Length = 1753
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 75/152 (49%), Gaps = 8/152 (5%)
Query: 63 AIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKC 122
A K ++ + +G M+ S SK + V+Q +GQQ + G+ G + V HF
Sbjct: 747 AYKGMNACNNVGTMVKSGSKGSTTNVSQMTAAVGQQ-SLEGKRLPFGFKDRVLPHFP--- 802
Query: 123 DYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAIL 182
D Y A G + + GL P E H++ RE ++ ++ +E G + + L+ L
Sbjct: 803 ---KDDYSPASRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKAL 859
Query: 183 RDVVVCYDGTVRNVCSNSIIQFEYGVKAGDKT 214
++++ YDGTVRN + I+QF YG D T
Sbjct: 860 EEIMIKYDGTVRNSLGD-ILQFTYGEDGLDAT 890
>Q71ET4_AMBTC (tr|Q71ET4) DNA-directed RNA polymerase (Fragment) OS=Amborella
trichopoda GN=RPB1 PE=2 SV=1
Length = 1013
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 79/169 (46%), Gaps = 8/169 (4%)
Query: 44 YNELVAQQLEKHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRG 103
+ V Q L K D A K +S+S+ L M+ + SK + ++Q +GQQ V G
Sbjct: 654 FENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQ-NVEG 712
Query: 104 RLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVR 163
+ G + HF D Y G + + GL P E H++ RE ++
Sbjct: 713 KRIPFGFNDRTLPHFT------KDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLID 766
Query: 164 SSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGD 212
++ SE G + + L+ + D++V YDGTVRN + +IQF YG D
Sbjct: 767 TAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDGMD 814
>M0XMW2_HORVD (tr|M0XMW2) DNA-directed RNA polymerase OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 1830
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 80/169 (47%), Gaps = 8/169 (4%)
Query: 44 YNELVAQQLEKHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRG 103
+ V Q L K + A K +S+S+ L M+ + SK + ++Q +GQQ V G
Sbjct: 702 FENRVNQVLNKARDESGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQ-NVEG 760
Query: 104 RLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVR 163
+ G ++ HF D Y G + + GL P E H++ RE ++
Sbjct: 761 KRIPFGFVDRTLPHFT------KDNYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLID 814
Query: 164 SSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGD 212
++ SE G + + L+ + D++V YDGTVRN + +IQF YG D
Sbjct: 815 TAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDGMD 862
>I7B533_9ASCO (tr|I7B533) DNA-directed RNA polymerase (Fragment) OS=Kuraishia
capsulata PE=3 SV=1
Length = 870
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 101/229 (44%), Gaps = 25/229 (10%)
Query: 4 IFSNGFSVGLHDFSISGAVKRVTDRNIG----KVSPLLY--QLRFIYNE---LVAQQLEK 54
+ NGFS+G+ D RV IG KV ++ Q + E V + E+
Sbjct: 468 LLHNGFSIGIGDAIADRETMRVITETIGEAKEKVQNIILDAQRNLLEPEPGMTVRESFEQ 527
Query: 55 HMQDIELPAIKFVSKSSRLG--------DMIDSKSKSALDKVTQQIGFLGQQLFVRGRLY 106
+ + A KS+ L M+ + SK + ++Q +GQQ+ V G+
Sbjct: 528 KVSKVLNEARDSAGKSAELSLKDSNNVKQMVTAGSKGSYINISQMSACVGQQI-VEGKRI 586
Query: 107 SKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSR 166
S G + HF D Y + G + + GL P E H+++ RE ++ ++
Sbjct: 587 SFGFADRSLPHFT------KDDYSAESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAV 640
Query: 167 GLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGDKTR 215
+E G + + L+ L D++V YDGT RN + +IQF YG D T+
Sbjct: 641 KTAETGYIQRRLLKALEDIMVHYDGTARNSLGD-VIQFLYGEDGIDGTQ 688
>A6RGX8_AJECN (tr|A6RGX8) DNA-directed RNA polymerase OS=Ajellomyces capsulata
(strain NAm1 / WU24) GN=HCAG_08895 PE=3 SV=1
Length = 1439
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 67/132 (50%), Gaps = 8/132 (6%)
Query: 76 MIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYG 135
M S SK + V Q + +GQQ+ R+ G + HF P A+ G
Sbjct: 794 MATSGSKGSDINVAQMVALVGQQIIGNQRV-QDGFQDRTLPHFPKYARQ-----PPAK-G 846
Query: 136 LLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRN 195
+R FF GL P E L H+IS RE +V ++ +E G + + LM L D+ YD TVRN
Sbjct: 847 FVRNSFFSGLTPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSTRYDDTVRN 906
Query: 196 VCSNSIIQFEYG 207
SN I+QF+YG
Sbjct: 907 SSSN-IVQFQYG 917
>I7AW82_9ASCO (tr|I7AW82) DNA-directed RNA polymerase (Fragment) OS=Zygoascus
hellenicus PE=3 SV=1
Length = 871
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 104/229 (45%), Gaps = 25/229 (10%)
Query: 4 IFSNGFSVGLHDF------------SISGAVKRVTDRNI----GKVSPLL-YQLRFIYNE 46
+ +GFSVG+ D +IS A ++V++ + K++P LR +
Sbjct: 470 LLHHGFSVGIGDTIADSATMTGIAATISEAKQKVSEYIMEAQENKLAPEPGMTLRESFEH 529
Query: 47 LVAQQLEKHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLY 106
V++ L + A + S+ + M+ S SK + ++Q +GQQ+ V G+
Sbjct: 530 NVSRVLNQARDTAGRSAETSLKDSNNVKQMVTSGSKGSFINISQMSACVGQQI-VEGKRI 588
Query: 107 SKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSR 166
G + HF D Y G + + GL P E H+++ RE ++ ++
Sbjct: 589 PFGFADRSLPHFT------KDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAV 642
Query: 167 GLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGDKTR 215
+E G + + L+ L DV+V YDGT RN N IIQF YG D T+
Sbjct: 643 KTAETGYIQRRLVKALEDVMVQYDGTTRNSLGN-IIQFVYGEDGLDATQ 690
>A8MAA2_CALMQ (tr|A8MAA2) DNA-directed RNA polymerase OS=Caldivirga
maquilingensis (strain ATCC 700844 / DSM 13496 / JCM
10307 / IC-167) GN=Cmaq_0185 PE=3 SV=1
Length = 889
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 80/160 (50%), Gaps = 8/160 (5%)
Query: 48 VAQQLEKHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYS 107
+A+ L K ++ +++K S + M + ++ +L Q LGQQ +RG Y
Sbjct: 711 LAETLSKIREEASKIVDDYMNKESEVYIMAKTGARGSLLNAAQMTAALGQQT-IRGERYR 769
Query: 108 KGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSRG 167
+G + HF GD P A G ++ F GL P E H+ R+ +V ++
Sbjct: 770 RGFTDRTLPHF-----LPGDKGPEAR-GFVKSNFRDGLSPIEYFFHAGGGRDGLVETAVR 823
Query: 168 LSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 207
S+ G + L+ ++D+ V YDGTVR+ ++IIQF+YG
Sbjct: 824 TSQSGYAQRRLINAMQDIYVAYDGTVRD-SQDAIIQFKYG 862
>G8YLC5_PICSO (tr|G8YLC5) DNA-directed RNA polymerase OS=Pichia sorbitophila
(strain ATCC MYA-4447 / BCRC 22081 / CBS 7064 / NBRC
10061 / NRRL Y-12695) GN=Piso0_001648 PE=3 SV=1
Length = 1454
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 66/132 (50%), Gaps = 8/132 (6%)
Query: 76 MIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYG 135
M SK + V+Q + +GQQ+ + G G + HF P ++ G
Sbjct: 789 MATCGSKGSTLNVSQMVAVVGQQI-ISGNRVPDGFQDRSLPHFT-----KNSKTPQSK-G 841
Query: 136 LLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRN 195
+R FF GL P E L H+IS RE +V ++ +E G + + LM L D+ YD TVRN
Sbjct: 842 FVRNSFFSGLSPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSTQYDNTVRN 901
Query: 196 VCSNSIIQFEYG 207
SN I+QF YG
Sbjct: 902 -SSNGIVQFTYG 912
>M0MYH8_9EURY (tr|M0MYH8) DNA-directed RNA polymerase OS=Halococcus salifodinae
DSM 8989 GN=C450_16590 PE=3 SV=1
Length = 984
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 103/224 (45%), Gaps = 25/224 (11%)
Query: 1 MESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQD-- 58
M +I GFS+G+ D SI A + D +I + +L Y + L D
Sbjct: 698 MRAIMHFGFSIGIDDESIPEAAETQIDESIDNAYERIDELITTYENDELESLPGRTVDET 757
Query: 59 IELPAIKFVSKS-SRLGD--------------MIDSKSKSALDKVTQQIGFLGQQLFVRG 103
+E+ ++ + K+ GD M +S ++ ++ +TQ +GQQ VRG
Sbjct: 758 LEMKIMQTLGKARDSAGDIAEDHFAEDNPAVIMAESGARGSMLNLTQMAACVGQQA-VRG 816
Query: 104 RLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVR 163
++G + SH+K D + +G + + GL P E H++ RE +V
Sbjct: 817 ERINRGYEDRTLSHYK------PDDLSAEAHGFVEHSYRGGLTPREFFFHAMGGREGLVD 870
Query: 164 SSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 207
++ S+ G L + L+ L ++ YDGTVR+ N I+QFE+G
Sbjct: 871 TAVRTSKSGYLQRRLINALSELETQYDGTVRDTNDN-IVQFEFG 913
>F7PP16_9EURY (tr|F7PP16) DNA-directed RNA polymerase OS=Halorhabdus tiamatea
SARL4B GN=HLRTI_16195 PE=3 SV=1
Length = 996
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 107/223 (47%), Gaps = 27/223 (12%)
Query: 3 SIFSNGFSVGLHDFSISGAVKRVTDRNI----GKVSPLLY-----QLRFIYNELVAQQLE 53
+I GFS+G+ D SI A D I +V L+ +L + V + LE
Sbjct: 719 TIMHFGFSIGIDDESIPPAAVEQVDEAIESAYDRVQELIETYEAGELESLPGRTVDETLE 778
Query: 54 -KHMQDI--------ELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGR 104
K MQ + ++ F S + + M DS ++ ++ +TQ G +GQQ VRG
Sbjct: 779 MKIMQTLGQARDSAGDIAEDHFASDNPAVV-MADSGARGSMLNLTQMAGAVGQQA-VRGE 836
Query: 105 LYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRS 164
++G + SHF+ + + +G + + GL P E H++ RE +V +
Sbjct: 837 RINRGYEDRTLSHFE------ANDLSAEAHGFVEHSYREGLGPKEFFFHAMGGREGLVDT 890
Query: 165 SRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 207
+ S+ G L + L+ L ++ YDGTVR+ S+++IQFE+G
Sbjct: 891 AVRTSKSGYLQRRLINALHELETQYDGTVRD-SSDTVIQFEFG 932
>L9WMT4_9EURY (tr|L9WMT4) DNA-directed RNA polymerase OS=Natronorubrum bangense
JCM 10635 GN=C494_04990 PE=3 SV=1
Length = 973
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 102/225 (45%), Gaps = 27/225 (12%)
Query: 1 MESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQDIE 60
M +I GFS+G+ D +I + D I + + +L Y + L D
Sbjct: 690 MRAIMHFGFSIGIDDETIPKEAQDRIDETIDDANDRVEELIEAYERGELESLPGRTIDET 749
Query: 61 LPAIKFVSKSSRLGD------------------MIDSKSKSALDKVTQQIGFLGQQLFVR 102
L +K + SR D M +S ++ ++ +TQ G +GQQ VR
Sbjct: 750 L-EMKIMQTLSRARDNAGNIADEHFEDDNPAVVMANSGARGSMLNLTQMAGAVGQQA-VR 807
Query: 103 GRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMV 162
G ++G + SH Y+ + + +G + + GL P E H++ RE +V
Sbjct: 808 GERINRGYEDRTLSH------YEPNDLSAEAHGFVENSYTSGLTPREFFFHAMGGREGLV 861
Query: 163 RSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 207
++ S+ G L + L+ L ++ YDGTVR+ S++I+QFE+G
Sbjct: 862 DTAVRTSKSGYLQRRLINALSELETQYDGTVRD-TSDTIVQFEFG 905
>D8S773_SELML (tr|D8S773) DNA-directed RNA polymerase OS=Selaginella
moellendorffii GN=SELMODRAFT_110201 PE=3 SV=1
Length = 1764
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 97/226 (42%), Gaps = 25/226 (11%)
Query: 4 IFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIYNE----------------- 46
+ +GFS+G+ D A + I K + L + E
Sbjct: 694 LLQHGFSIGIGDTIADSATMEKINETIFKAKNEVKDLIKMAQEKQLESQPGRTMMESFEN 753
Query: 47 LVAQQLEKHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLY 106
V Q L + + A K +S+S+ + M+ + SK + ++Q I +GQQ V G+
Sbjct: 754 RVNQVLNRARDEAGSSAQKSLSESNNVKAMVTAGSKGSFINISQMIACVGQQ-NVEGKRI 812
Query: 107 SKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSR 166
G ++ HF D Y G + + GL P E H++ RE ++ ++
Sbjct: 813 PFGFIDRTLPHFT------KDDYGPESRGFVENSYLRGLTPQEFYFHAMGGREGLIDTAV 866
Query: 167 GLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGD 212
SE G + + L+ + DV+V YDGTVRN + +IQF YG D
Sbjct: 867 KTSETGYIQRRLVKAMEDVMVKYDGTVRNSLGD-VIQFLYGEDGMD 911
>B8GDV8_METPE (tr|B8GDV8) DNA-directed RNA polymerase OS=Methanosphaerula
palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c)
GN=Mpal_2161 PE=3 SV=1
Length = 880
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 72/247 (29%), Positives = 114/247 (46%), Gaps = 35/247 (14%)
Query: 1 MESIFSNGFSVGLHDFSIS----GAVKRVTDRNIGKVSPLLYQLRFIYNELVAQQLEKHM 56
++ I +GFS G+ D +S G + V D V+ ++R IY + + +
Sbjct: 636 IKGIMIDGFSFGIDDEDLSKTEYGQIDEVLDNATTDVN---RRIR-IYEDGQLEPMPGRT 691
Query: 57 --QDIELPAIKFVSKS-SRLGD--------------MIDSKSKSALDKVTQQIGFLGQQL 99
+ +E+ ++ + KS R G+ M S ++ ++ +TQ G +GQQ
Sbjct: 692 PEETLEMQIMQVLGKSRDRTGEIAGAHLGLGNSAVLMAVSGARGSMLNLTQMAGCIGQQ- 750
Query: 100 FVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTRE 159
VRG +G HFK + D D + G ++ + GL+P E H+I RE
Sbjct: 751 SVRGERIVRGYFGRTLPHFK-RGDRGADAH-----GFVKHSYKSGLNPTEFFFHAIGGRE 804
Query: 160 IMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGDKTRYLFP 219
+V ++ S+ G L + L+ L+D+ V YDGTVR IIQF YG D R F
Sbjct: 805 GLVDTAVRTSQSGYLQRRLINALQDLKVEYDGTVRTT-GRRIIQFRYGEDGTDPMRGSF- 862
Query: 220 AGEPVGV 226
G+PV V
Sbjct: 863 -GDPVDV 868
>A1CLD8_ASPCL (tr|A1CLD8) DNA-directed RNA polymerase OS=Aspergillus clavatus
(strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 /
NRRL 1) GN=ACLA_041840 PE=3 SV=1
Length = 1449
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 71/132 (53%), Gaps = 8/132 (6%)
Query: 76 MIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYG 135
M S SK + V+Q + +GQQ+ + G+ G + HF + PS G
Sbjct: 795 MATSGSKGSSINVSQMVALVGQQI-IGGQRVQDGFQDRTLPHFP----KNARQPPSK--G 847
Query: 136 LLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRN 195
+R FF GL+P E + H++S RE +V ++ +E G + + LM L D+ YD TVRN
Sbjct: 848 FVRNSFFSGLEPTEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSSRYDDTVRN 907
Query: 196 VCSNSIIQFEYG 207
S++I+QF+YG
Sbjct: 908 -SSDAIVQFQYG 918
>E1RHV0_METP4 (tr|E1RHV0) DNA-directed RNA polymerase OS=Methanoplanus
petrolearius (strain DSM 11571 / OCM 486 / SEBR 4847)
GN=Mpet_1735 PE=3 SV=1
Length = 880
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 113/247 (45%), Gaps = 35/247 (14%)
Query: 1 MESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIYNE-----LVAQQLEKH 55
+ I +GFS G+ D +S D + + + + IY E + + LE
Sbjct: 636 IRGIMYDGFSFGIDDEDLSKIEYGQIDEVLNEAEDDVERRIRIYEEGQLEPMPGRTLE-- 693
Query: 56 MQDIELPAIKFVSKS-SRLGD--------------MIDSKSKSALDKVTQQIGFLGQQLF 100
+ +E+ ++ + K+ R GD M S ++ ++ +TQ G +GQQ
Sbjct: 694 -ETLEMQIMQVLGKARDRTGDIAGRHLGLSNSAVVMAVSGARGSMLNLTQMAGCIGQQA- 751
Query: 101 VRGRLYSKGLLEDVASHFKLKCDYDGD-GYPSAEYGLLRGCFFHGLDPFEELVHSISTRE 159
VRG ++G HFK GD G P+ +G +R + GL P E H+I RE
Sbjct: 752 VRGERITRGYEGRTLPHFK-----KGDRGAPA--HGFVRNSYKSGLTPTEFFFHAIGGRE 804
Query: 160 IMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGDKTRYLFP 219
+V ++ S+ G L + ++ L+D+ V YDGTVR IIQF YG + D +
Sbjct: 805 GLVDTAVRTSQSGYLQRRMINALQDLKVGYDGTVR-TSGGRIIQFRYGEDSTDPAKSSM- 862
Query: 220 AGEPVGV 226
G+PV V
Sbjct: 863 -GDPVDV 868
>A8N128_COPC7 (tr|A8N128) DNA-directed RNA polymerase OS=Coprinopsis cinerea
(strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003)
GN=CC1G_11229 PE=3 SV=2
Length = 1745
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 93/221 (42%), Gaps = 25/221 (11%)
Query: 4 IFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQ-----------------LRFIYNE 46
+F NGFS+G+ D +NI + + Q LR +
Sbjct: 671 LFHNGFSIGIGDTIADARTMEFITKNIAESKAKVAQVIEDANMDRLKTKPGMTLRESFES 730
Query: 47 LVAQQLEKHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLY 106
V L K A K + + + + M+ + SK + ++Q +GQQ V GR
Sbjct: 731 EVEGILNKARDSSGQYAQKHLKEDNNVKQMVVAGSKGSFINISQMSVCVGQQS-VEGRRI 789
Query: 107 SKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSR 166
G HF D + G + + GL P E H+++ RE ++ ++
Sbjct: 790 PFGFRHRTLPHFT------KDDFSPEARGFVENSYLRGLTPQEFFFHAMAGREGLIDTAV 843
Query: 167 GLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 207
+E G + + L+ L DV+VCYDGTVRN + +IQF YG
Sbjct: 844 KTAETGYIQRRLVKALEDVMVCYDGTVRNSLGD-LIQFVYG 883
>M1Y5V8_9EURY (tr|M1Y5V8) DNA-directed RNA polymerase OS=Natronomonas moolapensis
8.8.11 GN=rpoA1 PE=3 SV=1
Length = 1059
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 103/224 (45%), Gaps = 25/224 (11%)
Query: 1 MESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQD-- 58
M SI GFS+G+ D SI + I + + L Y + L D
Sbjct: 775 MRSIMHFGFSIGIDDESIEREAEEQIAEAIDNANERVETLIETYRNGELESLPGRTVDET 834
Query: 59 IELPAIKFVSKS---------SRLGD------MIDSKSKSALDKVTQQIGFLGQQLFVRG 103
+E+ ++ + K+ GD M S ++ ++ +TQ G +GQQ VRG
Sbjct: 835 LEMKIMQTLGKARDSAGDIADDHFGDDNPAVVMAQSGARGSMLNLTQMAGCVGQQA-VRG 893
Query: 104 RLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVR 163
++G + SHFK + S +G + + +GL P E H++ RE +V
Sbjct: 894 ERINRGYEDRTLSHFKP------NDLSSEAHGFVENSYRNGLTPREFFFHAMGGREGLVD 947
Query: 164 SSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 207
++ S+ G L + L+ L ++ YDGTVR+ S++++QFE+G
Sbjct: 948 TAVRTSKSGYLQRRLINALSELEAQYDGTVRD-TSDTVVQFEFG 990
>I7AAU4_9ASCO (tr|I7AAU4) DNA-directed RNA polymerase (Fragment) OS=Ogataea
minuta PE=3 SV=1
Length = 870
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 105/230 (45%), Gaps = 27/230 (11%)
Query: 4 IFSNGFSVGLHD-FSISGAVKRVTD-----------------RNIGKVSPLLYQLRFIYN 45
+ NGFS+G+ D + S +K +T+ N+ + P + +R +
Sbjct: 468 LLHNGFSIGIGDAIADSATMKTITETIAIAKEKVQEVIMDAQNNLLEAEPGM-TVRESFE 526
Query: 46 ELVAQQLEKHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRL 105
+ V++ L + A + S+ + M+ + SK + ++Q +GQQ+ V G+
Sbjct: 527 QKVSKLLNEARDSAGKSAETSLKDSNNVKQMVTAGSKGSYINISQMSACVGQQI-VEGKR 585
Query: 106 YSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSS 165
+ G + HF D Y + G + + GL P E H+++ RE ++ ++
Sbjct: 586 INFGFADRSLPHFT------KDDYSAESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTA 639
Query: 166 RGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGDKTR 215
+E G + + L+ L D++V YDGT RN + IIQF YG D T+
Sbjct: 640 VKTAETGYIQRRLLKALEDIMVHYDGTTRNSLGD-IIQFVYGEDGLDGTQ 688
>A2QU24_ASPNC (tr|A2QU24) DNA-directed RNA polymerase OS=Aspergillus niger
(strain CBS 513.88 / FGSC A1513) GN=An09g04100 PE=3 SV=1
Length = 1450
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 70/132 (53%), Gaps = 8/132 (6%)
Query: 76 MIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYG 135
M S SK + V+Q + +GQQ+ + G+ G + HF + PS G
Sbjct: 795 MATSGSKGSSINVSQMVALVGQQI-IGGQRVQDGFQDRTLPHFP----KNARQPPSK--G 847
Query: 136 LLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRN 195
+R FF GL+P E + H++S RE +V ++ +E G + + LM L D+ YD TVRN
Sbjct: 848 FVRNSFFSGLEPTEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSTRYDDTVRN 907
Query: 196 VCSNSIIQFEYG 207
S +I+QF+YG
Sbjct: 908 -SSAAIVQFQYG 918
>G7XMM9_ASPKW (tr|G7XMM9) DNA-directed RNA polymerase III largest subunit
OS=Aspergillus kawachii (strain NBRC 4308) GN=AKAW_06427
PE=3 SV=1
Length = 2146
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 70/132 (53%), Gaps = 8/132 (6%)
Query: 76 MIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYG 135
M S SK + V+Q + +GQQ+ + G+ G + HF + PS G
Sbjct: 1491 MATSGSKGSSINVSQMVALVGQQI-IGGQRVQDGFQDRTLPHFP----KNARQPPSK--G 1543
Query: 136 LLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRN 195
+R FF GL+P E + H++S RE +V ++ +E G + + LM L D+ YD TVRN
Sbjct: 1544 FVRNSFFSGLEPTEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSTRYDDTVRN 1603
Query: 196 VCSNSIIQFEYG 207
S +I+QF+YG
Sbjct: 1604 -SSAAIVQFQYG 1614