Miyakogusa Predicted Gene
- Lj0g3v0092909.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0092909.1 tr|G7LG09|G7LG09_MEDTR DNA-directed RNA
polymerase OS=Medicago truncatula GN=MTR_8g038990 PE=3
SV=1,68.75,0,RNA_pol_Rpb1_2,RNA polymerase, alpha subunit;
RNA_pol_Rpb1_5,RNA polymerase Rpb1, domain 5; RNA_pol_,CUFF.5297.1
(1584 letters)
Database: trembl
41,451,118 sequences; 13,208,986,710 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
K7MDF5_SOYBN (tr|K7MDF5) DNA-directed RNA polymerase OS=Glycine ... 2262 0.0
K7MDF9_SOYBN (tr|K7MDF9) DNA-directed RNA polymerase OS=Glycine ... 2262 0.0
I1MIR6_SOYBN (tr|I1MIR6) DNA-directed RNA polymerase OS=Glycine ... 2256 0.0
K7MDF7_SOYBN (tr|K7MDF7) DNA-directed RNA polymerase OS=Glycine ... 2256 0.0
K7M0Q7_SOYBN (tr|K7M0Q7) DNA-directed RNA polymerase OS=Glycine ... 2256 0.0
G7LG09_MEDTR (tr|G7LG09) DNA-directed RNA polymerase OS=Medicago... 2192 0.0
M5XM01_PRUPE (tr|M5XM01) Uncharacterized protein OS=Prunus persi... 1746 0.0
K4B027_SOLLC (tr|K4B027) DNA-directed RNA polymerase OS=Solanum ... 1567 0.0
D7LEE8_ARALL (tr|D7LEE8) DNA-directed RNA polymerase OS=Arabidop... 1486 0.0
R0FV63_9BRAS (tr|R0FV63) Uncharacterized protein OS=Capsella rub... 1477 0.0
M4C7I4_BRARP (tr|M4C7I4) DNA-directed RNA polymerase OS=Brassica... 1445 0.0
Q5D868_SPIOL (tr|Q5D868) DNA-directed RNA polymerase (Fragment) ... 1382 0.0
K3YP74_SETIT (tr|K3YP74) DNA-directed RNA polymerase OS=Setaria ... 1316 0.0
I1IV91_BRADI (tr|I1IV91) DNA-directed RNA polymerase OS=Brachypo... 1312 0.0
J3L9M9_ORYBR (tr|J3L9M9) DNA-directed RNA polymerase OS=Oryza br... 1299 0.0
F6I5R3_VITVI (tr|F6I5R3) DNA-directed RNA polymerase OS=Vitis vi... 1276 0.0
B9RGA8_RICCO (tr|B9RGA8) DNA-directed RNA polymerase OS=Ricinus ... 1267 0.0
M8BMS2_AEGTA (tr|M8BMS2) DNA-directed RNA polymerase II subunit ... 1266 0.0
B9F2S6_ORYSJ (tr|B9F2S6) DNA-directed RNA polymerase OS=Oryza sa... 1249 0.0
I1NXC6_ORYGL (tr|I1NXC6) DNA-directed RNA polymerase OS=Oryza gl... 1239 0.0
B9GWX9_POPTR (tr|B9GWX9) DNA-directed RNA polymerase OS=Populus ... 1238 0.0
M0SC38_MUSAM (tr|M0SC38) DNA-directed RNA polymerase OS=Musa acu... 1190 0.0
M0WRB9_HORVD (tr|M0WRB9) DNA-directed RNA polymerase OS=Hordeum ... 1107 0.0
B9GM06_POPTR (tr|B9GM06) DNA-directed RNA polymerase OS=Populus ... 1063 0.0
B8AHU1_ORYSI (tr|B8AHU1) DNA-directed RNA polymerase OS=Oryza sa... 982 0.0
Q1L5X7_SOLLC (tr|Q1L5X7) DNA-directed RNA polymerase (Fragment) ... 960 0.0
K3Y4N1_SETIT (tr|K3Y4N1) DNA-directed RNA polymerase OS=Setaria ... 939 0.0
M8C0F8_AEGTA (tr|M8C0F8) DNA-directed RNA polymerase II subunit ... 933 0.0
J3L864_ORYBR (tr|J3L864) DNA-directed RNA polymerase OS=Oryza br... 920 0.0
M0WRB8_HORVD (tr|M0WRB8) DNA-directed RNA polymerase OS=Hordeum ... 918 0.0
C5XJ93_SORBI (tr|C5XJ93) DNA-directed RNA polymerase (Fragment) ... 889 0.0
Q5JJW0_ORYSJ (tr|Q5JJW0) DNA-directed RNA polymerase OS=Oryza sa... 875 0.0
B9EWM0_ORYSJ (tr|B9EWM0) DNA-directed RNA polymerase OS=Oryza sa... 871 0.0
M0XPZ5_HORVD (tr|M0XPZ5) DNA-directed RNA polymerase OS=Hordeum ... 751 0.0
B8A9M1_ORYSI (tr|B8A9M1) DNA-directed RNA polymerase OS=Oryza sa... 696 0.0
K7USA4_MAIZE (tr|K7USA4) DNA-directed RNA polymerase OS=Zea mays... 592 e-166
C5XUR7_SORBI (tr|C5XUR7) DNA-directed RNA polymerase OS=Sorghum ... 589 e-165
Q0E3V3_ORYSJ (tr|Q0E3V3) DNA-directed RNA polymerase (Fragment) ... 534 e-148
M8ASR8_AEGTA (tr|M8ASR8) DNA-directed RNA polymerase II subunit ... 494 e-136
B9GWY0_POPTR (tr|B9GWY0) Predicted protein (Fragment) OS=Populus... 459 e-126
A9SIX8_PHYPA (tr|A9SIX8) DNA-directed RNA polymerase OS=Physcomi... 416 e-113
A9SIR4_PHYPA (tr|A9SIR4) DNA-directed RNA polymerase OS=Physcomi... 407 e-110
M0XPZ2_HORVD (tr|M0XPZ2) DNA-directed RNA polymerase OS=Hordeum ... 389 e-105
M5XPM8_PRUPE (tr|M5XPM8) Uncharacterized protein OS=Prunus persi... 388 e-104
I1NVI7_ORYGL (tr|I1NVI7) DNA-directed RNA polymerase OS=Oryza gl... 376 e-101
Q1L5X8_9BRYO (tr|Q1L5X8) DNA-directed RNA polymerase (Fragment) ... 353 3e-94
D8RN79_SELML (tr|D8RN79) DNA-directed RNA polymerase OS=Selagine... 352 9e-94
D8RLP4_SELML (tr|D8RLP4) DNA-directed RNA polymerase OS=Selagine... 345 1e-91
M0XQ02_HORVD (tr|M0XQ02) DNA-directed RNA polymerase OS=Hordeum ... 343 4e-91
K7LMQ8_SOYBN (tr|K7LMQ8) DNA-directed RNA polymerase OS=Glycine ... 343 5e-91
K7K551_SOYBN (tr|K7K551) DNA-directed RNA polymerase OS=Glycine ... 339 6e-90
I1JA29_SOYBN (tr|I1JA29) DNA-directed RNA polymerase OS=Glycine ... 336 6e-89
M5WEG2_PRUPE (tr|M5WEG2) Uncharacterized protein OS=Prunus persi... 333 4e-88
J3MZZ4_ORYBR (tr|J3MZZ4) DNA-directed RNA polymerase OS=Oryza br... 332 7e-88
Q1L5Y1_9MONI (tr|Q1L5Y1) DNA-directed RNA polymerase (Fragment) ... 332 7e-88
D7KU36_ARALL (tr|D7KU36) DNA-directed RNA polymerase OS=Arabidop... 328 2e-86
F6HUI3_VITVI (tr|F6HUI3) DNA-directed RNA polymerase OS=Vitis vi... 327 2e-86
A5BGS4_VITVI (tr|A5BGS4) Putative uncharacterized protein OS=Vit... 327 3e-86
J3M0K5_ORYBR (tr|J3M0K5) DNA-directed RNA polymerase OS=Oryza br... 325 7e-86
B9RC12_RICCO (tr|B9RC12) DNA-directed RNA polymerase OS=Ricinus ... 325 1e-85
G7LG88_MEDTR (tr|G7LG88) DNA-directed RNA polymerase OS=Medicago... 325 1e-85
R0HUP7_9BRAS (tr|R0HUP7) Uncharacterized protein OS=Capsella rub... 310 3e-81
M0TPQ4_MUSAM (tr|M0TPQ4) DNA-directed RNA polymerase OS=Musa acu... 303 3e-79
Q1L5X9_MARPO (tr|Q1L5X9) DNA-directed RNA polymerase (Fragment) ... 303 5e-79
C0JR68_MAIZE (tr|C0JR68) DNA-directed RNA polymerase OS=Zea mays... 298 1e-77
C0JR65_MAIZE (tr|C0JR65) DNA-directed RNA polymerase OS=Zea mays... 298 1e-77
K4CP21_SOLLC (tr|K4CP21) DNA-directed RNA polymerase OS=Solanum ... 296 6e-77
Q1L5X6_SOLLC (tr|Q1L5X6) DNA-directed RNA polymerase (Fragment) ... 290 3e-75
M4EFP9_BRARP (tr|M4EFP9) DNA-directed RNA polymerase OS=Brassica... 285 1e-73
Q01JX0_ORYSA (tr|Q01JX0) DNA-directed RNA polymerase OS=Oryza sa... 283 5e-73
Q1L5X5_ANTMA (tr|Q1L5X5) DNA-directed RNA polymerase (Fragment) ... 282 8e-73
G7KER5_MEDTR (tr|G7KER5) DNA-directed RNA polymerase OS=Medicago... 278 1e-71
R7WAM9_AEGTA (tr|R7WAM9) DNA-directed RNA polymerase subunit A O... 270 3e-69
B9G500_ORYSJ (tr|B9G500) DNA-directed RNA polymerase OS=Oryza sa... 270 4e-69
B8BED0_ORYSI (tr|B8BED0) DNA-directed RNA polymerase OS=Oryza sa... 268 2e-68
N1R5E0_AEGTA (tr|N1R5E0) Uncharacterized protein OS=Aegilops tau... 265 2e-67
B8AT49_ORYSI (tr|B8AT49) DNA-directed RNA polymerase OS=Oryza sa... 245 1e-61
B9FC30_ORYSJ (tr|B9FC30) DNA-directed RNA polymerase OS=Oryza sa... 244 2e-61
A5BZZ3_VITVI (tr|A5BZZ3) DNA-directed RNA polymerase OS=Vitis vi... 230 3e-57
M8C5N9_AEGTA (tr|M8C5N9) DNA-directed RNA polymerase III subunit... 229 9e-57
M7ZUZ1_TRIUA (tr|M7ZUZ1) DNA-directed RNA polymerase D subunit 1... 223 4e-55
D8PLU0_SCHCM (tr|D8PLU0) DNA-directed RNA polymerase OS=Schizoph... 223 6e-55
M5ECE3_MALSM (tr|M5ECE3) Genomic scaffold, msy_sf_17 OS=Malassez... 211 2e-51
B9GM05_POPTR (tr|B9GM05) Predicted protein OS=Populus trichocarp... 211 2e-51
M0VV69_HORVD (tr|M0VV69) DNA-directed RNA polymerase OS=Hordeum ... 208 1e-50
M0VV71_HORVD (tr|M0VV71) DNA-directed RNA polymerase OS=Hordeum ... 208 2e-50
J9VSQ4_CRYNH (tr|J9VSQ4) DNA-directed RNA polymerase OS=Cryptoco... 206 8e-50
Q5KGG3_CRYNJ (tr|Q5KGG3) DNA-directed RNA polymerase OS=Cryptoco... 205 1e-49
F5HIN3_CRYNB (tr|F5HIN3) DNA-directed RNA polymerase OS=Cryptoco... 205 1e-49
E6R7B9_CRYGW (tr|E6R7B9) DNA-directed RNA polymerase OS=Cryptoco... 204 2e-49
M3B0A6_9PEZI (tr|M3B0A6) DNA-directed RNA polymerase OS=Pseudoce... 204 2e-49
N1PVU3_MYCPJ (tr|N1PVU3) Uncharacterized protein OS=Dothistroma ... 204 2e-49
M0VV74_HORVD (tr|M0VV74) DNA-directed RNA polymerase OS=Hordeum ... 204 3e-49
K1W5F5_TRIAC (tr|K1W5F5) DNA-directed RNA polymerase OS=Trichosp... 202 7e-49
J4U7H4_TRIAS (tr|J4U7H4) DNA-directed RNA polymerase OS=Trichosp... 202 7e-49
Q0PQ11_9PEZI (tr|Q0PQ11) DNA-directed RNA polymerase (Fragment) ... 198 1e-47
M5VSC7_PRUPE (tr|M5VSC7) Uncharacterized protein OS=Prunus persi... 194 2e-46
M0VV76_HORVD (tr|M0VV76) DNA-directed RNA polymerase OS=Hordeum ... 194 2e-46
F2QW17_PICP7 (tr|F2QW17) DNA-directed RNA polymerase OS=Komagata... 193 6e-46
C4R4Y0_PICPG (tr|C4R4Y0) DNA-directed RNA polymerase OS=Komagata... 193 6e-46
D8RCH5_SELML (tr|D8RCH5) DNA-directed RNA polymerase (Fragment) ... 192 1e-45
A1RWW5_THEPD (tr|A1RWW5) DNA-directed RNA polymerase OS=Thermofi... 191 2e-45
B6H9U6_PENCW (tr|B6H9U6) DNA-directed RNA polymerase OS=Penicill... 190 4e-45
B7PVV6_IXOSC (tr|B7PVV6) DNA-directed RNA polymerase OS=Ixodes s... 190 4e-45
B9GKP9_POPTR (tr|B9GKP9) DNA-directed RNA polymerase OS=Populus ... 190 5e-45
A1YIA8_9ASCO (tr|A1YIA8) DNA-directed RNA polymerase (Fragment) ... 190 5e-45
M5FQ84_DACSP (tr|M5FQ84) Subunit of DNA dependent RNA-polymerase... 189 7e-45
A5AJJ3_VITVI (tr|A5AJJ3) Putative uncharacterized protein OS=Vit... 189 1e-44
D9Q2P3_ACIS3 (tr|D9Q2P3) DNA-directed RNA polymerase OS=Acidilob... 189 1e-44
I2GVL8_TETBL (tr|I2GVL8) DNA-directed RNA polymerase OS=Tetrapis... 188 2e-44
K9G6H4_PEND2 (tr|K9G6H4) DNA-directed RNA polymerase OS=Penicill... 188 2e-44
K9FLF3_PEND1 (tr|K9FLF3) DNA-directed RNA polymerase OS=Penicill... 188 2e-44
K8ECL4_9CHLO (tr|K8ECL4) DNA-directed RNA polymerase OS=Bathycoc... 188 2e-44
K0KEX7_WICCF (tr|K0KEX7) DNA-directed RNA polymerase OS=Wickerha... 186 7e-44
H2U2N2_TAKRU (tr|H2U2N2) DNA-directed RNA polymerase OS=Takifugu... 186 8e-44
L0PB43_PNEJ8 (tr|L0PB43) DNA-directed RNA polymerase OS=Pneumocy... 186 9e-44
H3CXP9_TETNG (tr|H3CXP9) DNA-directed RNA polymerase OS=Tetraodo... 186 1e-43
B0DB45_LACBS (tr|B0DB45) DNA-directed RNA polymerase OS=Laccaria... 185 1e-43
D2RIB4_ARCPA (tr|D2RIB4) DNA-directed RNA polymerase OS=Archaeog... 185 1e-43
J9ISD7_9SPIT (tr|J9ISD7) DNA-directed RNA polymerase OS=Oxytrich... 185 2e-43
G8ZUZ8_TORDC (tr|G8ZUZ8) DNA-directed RNA polymerase OS=Torulasp... 184 2e-43
A8N128_COPC7 (tr|A8N128) DNA-directed RNA polymerase OS=Coprinop... 184 2e-43
Q5S1Y0_9HOMO (tr|Q5S1Y0) DNA-directed RNA polymerase (Fragment) ... 184 3e-43
H3AVP5_LATCH (tr|H3AVP5) DNA-directed RNA polymerase (Fragment) ... 184 3e-43
I3JRW6_ORENI (tr|I3JRW6) DNA-directed RNA polymerase OS=Oreochro... 183 6e-43
K0IC33_NITGG (tr|K0IC33) DNA-directed RNA polymerase OS=Nitrosos... 183 7e-43
D9ZB63_9ARCH (tr|D9ZB63) DNA-directed RNA polymerase (Fragment) ... 183 7e-43
Q2PYR1_9FUNG (tr|Q2PYR1) DNA-directed RNA polymerase (Fragment) ... 182 7e-43
Q6CBQ3_YARLI (tr|Q6CBQ3) DNA-directed RNA polymerase OS=Yarrowia... 182 9e-43
K9ICM6_AGABB (tr|K9ICM6) DNA-directed RNA polymerase (Fragment) ... 182 9e-43
A4I766_LEIIN (tr|A4I766) DNA-directed RNA polymerase OS=Leishman... 182 1e-42
E9BN38_LEIDB (tr|E9BN38) DNA-directed RNA polymerase OS=Leishman... 182 1e-42
K5XJ33_AGABU (tr|K5XJ33) DNA-directed RNA polymerase OS=Agaricus... 182 1e-42
H2Z9D9_CIOSA (tr|H2Z9D9) DNA-directed RNA polymerase (Fragment) ... 182 1e-42
A4RTE2_OSTLU (tr|A4RTE2) DNA-directed RNA polymerase OS=Ostreoco... 182 1e-42
A7J5B1_9LECA (tr|A7J5B1) DNA-directed RNA polymerase (Fragment) ... 181 2e-42
M4AMP3_XIPMA (tr|M4AMP3) DNA-directed RNA polymerase OS=Xiphopho... 181 2e-42
M0VV72_HORVD (tr|M0VV72) DNA-directed RNA polymerase OS=Hordeum ... 181 2e-42
M0VV73_HORVD (tr|M0VV73) DNA-directed RNA polymerase OS=Hordeum ... 181 2e-42
J8Q283_SACAR (tr|J8Q283) DNA-directed RNA polymerase OS=Saccharo... 181 2e-42
Q4Q600_LEIMA (tr|Q4Q600) DNA-directed RNA polymerase OS=Leishman... 181 2e-42
R7SV30_DICSQ (tr|R7SV30) Beta and beta-prime subunits of DNA dep... 181 2e-42
A8Q5I6_MALGO (tr|A8Q5I6) DNA-directed RNA polymerase OS=Malassez... 181 2e-42
G3Q6T9_GASAC (tr|G3Q6T9) DNA-directed RNA polymerase (Fragment) ... 181 2e-42
M0VV68_HORVD (tr|M0VV68) DNA-directed RNA polymerase OS=Hordeum ... 181 2e-42
Q2PYR5_9FUNG (tr|Q2PYR5) DNA-directed RNA polymerase (Fragment) ... 181 3e-42
Q9NJR9_LEIDO (tr|Q9NJR9) DNA-directed RNA polymerase OS=Leishman... 181 3e-42
A1YIB0_9HOMO (tr|A1YIB0) DNA-directed RNA polymerase (Fragment) ... 181 3e-42
Q584K3_TRYB2 (tr|Q584K3) DNA-directed RNA polymerase OS=Trypanos... 181 3e-42
Q57YU2_TRYB2 (tr|Q57YU2) DNA-directed RNA polymerase OS=Trypanos... 181 3e-42
Q26794_9TRYP (tr|Q26794) DNA-directed RNA polymerase OS=Trypanos... 181 3e-42
K2NKG9_TRYCR (tr|K2NKG9) DNA-directed RNA polymerase OS=Trypanos... 181 3e-42
Q26791_9TRYP (tr|Q26791) DNA-directed RNA polymerase OS=Trypanos... 181 3e-42
C9ZMF2_TRYB9 (tr|C9ZMF2) DNA-directed RNA polymerase OS=Trypanos... 181 3e-42
A7TNS6_VANPO (tr|A7TNS6) DNA-directed RNA polymerase OS=Vanderwa... 180 4e-42
M2N508_9PEZI (tr|M2N508) DNA-directed RNA polymerase OS=Baudoini... 180 4e-42
G8BX78_TETPH (tr|G8BX78) DNA-directed RNA polymerase OS=Tetrapis... 180 5e-42
M2QWM8_CERSU (tr|M2QWM8) DNA-directed RNA polymerase OS=Ceripori... 180 6e-42
F8QG95_SERL3 (tr|F8QG95) DNA-directed RNA polymerase OS=Serpula ... 179 6e-42
H8X2B4_CANO9 (tr|H8X2B4) DNA-directed RNA polymerase OS=Candida ... 179 6e-42
F8PAY6_SERL9 (tr|F8PAY6) DNA-directed RNA polymerase OS=Serpula ... 179 6e-42
C9ZWN4_TRYB9 (tr|C9ZWN4) DNA-directed RNA polymerase (Fragment) ... 179 8e-42
L7ML82_9ACAR (tr|L7ML82) DNA-directed RNA polymerase (Fragment) ... 179 8e-42
Q9C428_9FUNG (tr|Q9C428) DNA-directed RNA polymerase (Fragment) ... 179 8e-42
A1YIA9_9ASCO (tr|A1YIA9) DNA-directed RNA polymerase (Fragment) ... 179 8e-42
L7M992_9ACAR (tr|L7M992) DNA-directed RNA polymerase OS=Rhipicep... 179 8e-42
N1JNX2_ERYGR (tr|N1JNX2) DNA-directed RNA polymerase III subunit... 179 8e-42
Q5I2R7_9HOMO (tr|Q5I2R7) DNA-directed RNA polymerase (Fragment) ... 179 1e-41
H3G223_PRIPA (tr|H3G223) DNA-directed RNA polymerase OS=Pristion... 179 1e-41
A5H293_9LECA (tr|A5H293) DNA-directed RNA polymerase (Fragment) ... 179 1e-41
Q8ISB0_TRYCR (tr|Q8ISB0) DNA-directed RNA polymerase OS=Trypanos... 179 1e-41
G0ULQ7_TRYCI (tr|G0ULQ7) DNA-directed RNA polymerase OS=Trypanos... 179 1e-41
J9IL94_9SPIT (tr|J9IL94) DNA-directed RNA polymerase OS=Oxytrich... 179 1e-41
B9WF61_CANDC (tr|B9WF61) DNA-directed RNA polymerase OS=Candida ... 178 2e-41
A1YIB2_SMICU (tr|A1YIB2) DNA-directed RNA polymerase (Fragment) ... 178 2e-41
G8YLC5_PICSO (tr|G8YLC5) DNA-directed RNA polymerase OS=Pichia s... 178 2e-41
K4N3B4_9EUKA (tr|K4N3B4) DNA-directed RNA polymerase OS=Amoeboap... 178 2e-41
Q95W43_TRYCR (tr|Q95W43) DNA-directed RNA polymerase OS=Trypanos... 178 2e-41
Q2PYS5_HYACU (tr|Q2PYS5) DNA-directed RNA polymerase (Fragment) ... 178 2e-41
H2AUV0_KAZAF (tr|H2AUV0) DNA-directed RNA polymerase OS=Kazachst... 177 2e-41
Q5A0Z3_CANAL (tr|Q5A0Z3) DNA-directed RNA polymerase OS=Candida ... 177 2e-41
Q4DDX5_TRYCC (tr|Q4DDX5) DNA-directed RNA polymerase OS=Trypanos... 177 2e-41
C4YGE6_CANAW (tr|C4YGE6) DNA-directed RNA polymerase OS=Candida ... 177 2e-41
G0UT19_TRYCI (tr|G0UT19) DNA-directed RNA polymerase OS=Trypanos... 177 3e-41
H2KUH4_CLOSI (tr|H2KUH4) DNA-directed RNA polymerase OS=Clonorch... 177 3e-41
Q5A164_CANAL (tr|Q5A164) DNA-directed RNA polymerase OS=Candida ... 177 3e-41
H9GLG5_ANOCA (tr|H9GLG5) DNA-directed RNA polymerase OS=Anolis c... 177 4e-41
H2Z9D8_CIOSA (tr|H2Z9D8) DNA-directed RNA polymerase (Fragment) ... 177 4e-41
M0VV70_HORVD (tr|M0VV70) DNA-directed RNA polymerase OS=Hordeum ... 177 4e-41
M3WBR8_FELCA (tr|M3WBR8) DNA-directed RNA polymerase OS=Felis ca... 177 4e-41
K4E797_TRYCR (tr|K4E797) DNA-directed RNA polymerase (Fragment) ... 177 5e-41
H9F1K5_MACMU (tr|H9F1K5) DNA-directed RNA polymerase (Fragment) ... 177 5e-41
Q2PYS8_9FUNG (tr|Q2PYS8) DNA-directed RNA polymerase (Fragment) ... 177 5e-41
H2Z9E0_CIOSA (tr|H2Z9E0) DNA-directed RNA polymerase (Fragment) ... 177 5e-41
A1YIB5_9FUNG (tr|A1YIB5) DNA-directed RNA polymerase (Fragment) ... 176 5e-41
Q4P7Q0_USTMA (tr|Q4P7Q0) DNA-directed RNA polymerase OS=Ustilago... 176 5e-41
A1YIB3_9FUNG (tr|A1YIB3) DNA-directed RNA polymerase (Fragment) ... 176 5e-41
C1GX38_PARBA (tr|C1GX38) DNA-directed RNA polymerase OS=Paracocc... 176 5e-41
A1YIB1_9BASI (tr|A1YIB1) DNA-directed RNA polymerase (Fragment) ... 176 6e-41
G0TZQ4_TRYVY (tr|G0TZQ4) DNA-directed RNA polymerase (Fragment) ... 176 6e-41
J9NW09_CANFA (tr|J9NW09) DNA-directed RNA polymerase OS=Canis fa... 176 7e-41
H0VRW6_CAVPO (tr|H0VRW6) DNA-directed RNA polymerase OS=Cavia po... 176 7e-41
R9NXG0_9BASI (tr|R9NXG0) Uncharacterized protein OS=Pseudozyma h... 176 7e-41
H2Z9E3_CIOSA (tr|H2Z9E3) DNA-directed RNA polymerase OS=Ciona sa... 176 8e-41
Q7XTZ3_ORYSJ (tr|Q7XTZ3) DNA-directed RNA polymerase OS=Oryza sa... 176 8e-41
E9RHE1_9HEXA (tr|E9RHE1) DNA-directed RNA polymerase (Fragment) ... 176 8e-41
A1YIB9_ALLMA (tr|A1YIB9) DNA-directed RNA polymerase (Fragment) ... 176 8e-41
G8B659_CANPC (tr|G8B659) DNA-directed RNA polymerase OS=Candida ... 176 8e-41
M3J5V2_CANMA (tr|M3J5V2) DNA-directed RNA polymerase (Fragment) ... 176 8e-41
A7J588_9LECA (tr|A7J588) DNA-directed RNA polymerase (Fragment) ... 176 8e-41
H0GNN4_9SACH (tr|H0GNN4) DNA-directed RNA polymerase OS=Saccharo... 176 9e-41
M7NMZ7_9ASCO (tr|M7NMZ7) Uncharacterized protein OS=Pneumocystis... 176 1e-40
F7BLR6_XENTR (tr|F7BLR6) DNA-directed RNA polymerase (Fragment) ... 175 1e-40
Q2PYR4_9FUNG (tr|Q2PYR4) DNA-directed RNA polymerase (Fragment) ... 175 1e-40
J4IAY2_FIBRA (tr|J4IAY2) DNA-directed RNA polymerase OS=Fibropor... 175 1e-40
G1TES0_RABIT (tr|G1TES0) DNA-directed RNA polymerase OS=Oryctola... 175 1e-40
K5X834_PHACS (tr|K5X834) DNA-directed RNA polymerase OS=Phaneroc... 175 1e-40
E6ZML9_SPORE (tr|E6ZML9) DNA-directed RNA polymerase OS=Sporisor... 175 1e-40
G3RFS4_GORGO (tr|G3RFS4) DNA-directed RNA polymerase OS=Gorilla ... 175 1e-40
M7NS02_9ASCO (tr|M7NS02) Uncharacterized protein OS=Pneumocystis... 175 1e-40
E7QKQ6_YEASZ (tr|E7QKQ6) DNA-directed RNA polymerase OS=Saccharo... 175 1e-40
E7KII6_YEASA (tr|E7KII6) DNA-directed RNA polymerase OS=Saccharo... 175 1e-40
C8ZI78_YEAS8 (tr|C8ZI78) DNA-directed RNA polymerase OS=Saccharo... 175 1e-40
B5VS07_YEAS6 (tr|B5VS07) DNA-directed RNA polymerase OS=Saccharo... 175 1e-40
B3LJF9_YEAS1 (tr|B3LJF9) DNA-directed RNA polymerase OS=Saccharo... 175 1e-40
F6XTX6_MONDO (tr|F6XTX6) DNA-directed RNA polymerase OS=Monodelp... 175 1e-40
G3RTC9_GORGO (tr|G3RTC9) DNA-directed RNA polymerase OS=Gorilla ... 175 1e-40
M0XQ01_HORVD (tr|M0XQ01) Uncharacterized protein OS=Hordeum vulg... 175 1e-40
N1NYF1_YEASX (tr|N1NYF1) Rpo31p OS=Saccharomyces cerevisiae CEN.... 175 1e-40
F9X8Y2_MYCGM (tr|F9X8Y2) DNA-directed RNA polymerase OS=Mycospha... 175 1e-40
A6ZNW4_YEAS7 (tr|A6ZNW4) DNA-directed RNA polymerase OS=Saccharo... 175 1e-40
I2FUN2_USTH4 (tr|I2FUN2) DNA-directed RNA polymerase OS=Ustilago... 175 1e-40
G3VJ85_SARHA (tr|G3VJ85) DNA-directed RNA polymerase OS=Sarcophi... 175 1e-40
G2WMZ2_YEASK (tr|G2WMZ2) DNA-directed RNA polymerase OS=Saccharo... 175 2e-40
C7GMM0_YEAS2 (tr|C7GMM0) DNA-directed RNA polymerase OS=Saccharo... 175 2e-40
G9M7Z8_9FUNG (tr|G9M7Z8) DNA-directed RNA polymerase (Fragment) ... 175 2e-40
B9WN64_CANDC (tr|B9WN64) DNA-directed RNA polymerase OS=Candida ... 175 2e-40
G1PCY5_MYOLU (tr|G1PCY5) DNA-directed RNA polymerase OS=Myotis l... 175 2e-40
G8YNQ4_PICSO (tr|G8YNQ4) DNA-directed RNA polymerase OS=Pichia s... 175 2e-40
F1Q9K4_DANRE (tr|F1Q9K4) DNA-directed RNA polymerase OS=Danio re... 175 2e-40
J3PS24_PUCT1 (tr|J3PS24) DNA-directed RNA polymerase OS=Puccinia... 175 2e-40
F1KQ77_ASCSU (tr|F1KQ77) DNA-directed RNA polymerase OS=Ascaris ... 175 2e-40
D3ZGF8_RAT (tr|D3ZGF8) DNA-directed RNA polymerase OS=Rattus nor... 174 2e-40
I1L748_SOYBN (tr|I1L748) DNA-directed RNA polymerase OS=Glycine ... 174 2e-40
G7PTH8_MACFA (tr|G7PTH8) DNA-directed RNA polymerase OS=Macaca f... 174 2e-40
G7NIF8_MACMU (tr|G7NIF8) DNA-directed RNA polymerase OS=Macaca m... 174 2e-40
O35559_CRIGR (tr|O35559) DNA-directed RNA polymerase OS=Cricetul... 174 2e-40
D4A5A6_RAT (tr|D4A5A6) DNA-directed RNA polymerase OS=Rattus nor... 174 2e-40
E3L0Q1_PUCGT (tr|E3L0Q1) DNA-directed RNA polymerase OS=Puccinia... 174 2e-40
I3LYD0_SPETR (tr|I3LYD0) DNA-directed RNA polymerase OS=Spermoph... 174 2e-40
O08847_MOUSE (tr|O08847) DNA-directed RNA polymerase OS=Mus musc... 174 2e-40
A5H294_9LECA (tr|A5H294) DNA-directed RNA polymerase (Fragment) ... 174 2e-40
M3YE15_MUSPF (tr|M3YE15) DNA-directed RNA polymerase OS=Mustela ... 174 2e-40
G1TTQ1_RABIT (tr|G1TTQ1) DNA-directed RNA polymerase OS=Oryctola... 174 2e-40
A1YIC6_NEOFR (tr|A1YIC6) DNA-directed RNA polymerase (Fragment) ... 174 2e-40
H2NSK0_PONAB (tr|H2NSK0) DNA-directed RNA polymerase OS=Pongo ab... 174 3e-40
G3TV69_LOXAF (tr|G3TV69) DNA-directed RNA polymerase OS=Loxodont... 174 3e-40
G3T277_LOXAF (tr|G3T277) DNA-directed RNA polymerase OS=Loxodont... 174 3e-40
F1PGS0_CANFA (tr|F1PGS0) DNA-directed RNA polymerase OS=Canis fa... 174 3e-40
I3LJR4_PIG (tr|I3LJR4) DNA-directed RNA polymerase OS=Sus scrofa... 174 3e-40
C0SE75_PARBP (tr|C0SE75) DNA-directed RNA polymerase OS=Paracocc... 174 3e-40
G1MCZ1_AILME (tr|G1MCZ1) DNA-directed RNA polymerase OS=Ailuropo... 174 3e-40
H2R1J6_PANTR (tr|H2R1J6) DNA-directed RNA polymerase OS=Pan trog... 174 3e-40
L5LZE1_MYODS (tr|L5LZE1) DNA-directed RNA polymerase OS=Myotis d... 174 3e-40
Q76M93_CRIGR (tr|Q76M93) DNA-directed RNA polymerase OS=Cricetul... 174 3e-40
G3MZY8_BOVIN (tr|G3MZY8) DNA-directed RNA polymerase OS=Bos taur... 174 3e-40
G1REA5_NOMLE (tr|G1REA5) DNA-directed RNA polymerase OS=Nomascus... 174 3e-40
F7IJW5_CALJA (tr|F7IJW5) DNA-directed RNA polymerase OS=Callithr... 174 3e-40
I7A0C5_SCHPM (tr|I7A0C5) DNA-directed RNA polymerase (Fragment) ... 174 3e-40
G5B5C5_HETGA (tr|G5B5C5) DNA-directed RNA polymerase OS=Heteroce... 174 3e-40
K9J413_DESRO (tr|K9J413) DNA-directed RNA polymerase OS=Desmodus... 174 3e-40
H2Z9E6_CIOSA (tr|H2Z9E6) DNA-directed RNA polymerase (Fragment) ... 174 3e-40
M9MD47_9BASI (tr|M9MD47) Ngg1-interacting factor 3 protein NIF3L... 174 3e-40
A5H276_9LECA (tr|A5H276) DNA-directed RNA polymerase (Fragment) ... 174 3e-40
F2KNF4_ARCVS (tr|F2KNF4) DNA-directed RNA polymerase OS=Archaeog... 174 3e-40
B7PJA3_IXOSC (tr|B7PJA3) DNA-directed RNA polymerase (Fragment) ... 174 4e-40
F6Z7Q4_HORSE (tr|F6Z7Q4) DNA-directed RNA polymerase OS=Equus ca... 174 4e-40
I6NDX4_ERECY (tr|I6NDX4) DNA-directed RNA polymerase OS=Eremothe... 174 4e-40
B6JYP8_SCHJY (tr|B6JYP8) DNA-directed RNA polymerase OS=Schizosa... 174 4e-40
H0XW09_OTOGA (tr|H0XW09) DNA-directed RNA polymerase OS=Otolemur... 174 4e-40
Q2PYP9_9FUNG (tr|Q2PYP9) DNA-directed RNA polymerase (Fragment) ... 173 4e-40
H2Z9E2_CIOSA (tr|H2Z9E2) DNA-directed RNA polymerase (Fragment) ... 173 5e-40
A1YIC3_9FUNG (tr|A1YIC3) DNA-directed RNA polymerase (Fragment) ... 173 5e-40
L5JWI3_PTEAL (tr|L5JWI3) DNA-directed RNA polymerase OS=Pteropus... 173 5e-40
H2Z9E5_CIOSA (tr|H2Z9E5) DNA-directed RNA polymerase (Fragment) ... 173 5e-40
M3C1A1_9PEZI (tr|M3C1A1) DNA-directed RNA polymerase OS=Mycospha... 173 5e-40
C1H3Q4_PARBA (tr|C1H3Q4) DNA-directed RNA polymerase OS=Paracocc... 173 5e-40
A5H277_9LECA (tr|A5H277) DNA-directed RNA polymerase (Fragment) ... 173 5e-40
F7HB40_MACMU (tr|F7HB40) DNA-directed RNA polymerase OS=Macaca m... 173 5e-40
Q5QHU1_AMAPH (tr|Q5QHU1) DNA-directed RNA polymerase (Fragment) ... 173 5e-40
F4S9X8_MELLP (tr|F4S9X8) DNA-directed RNA polymerase OS=Melampso... 173 5e-40
Q55QA7_CRYNB (tr|Q55QA7) DNA-directed RNA polymerase OS=Cryptoco... 173 6e-40
R7SAL6_TREMS (tr|R7SAL6) Uncharacterized protein OS=Tremella mes... 173 6e-40
A1YIB8_9GLOM (tr|A1YIB8) DNA-directed RNA polymerase (Fragment) ... 173 6e-40
D2HPW2_AILME (tr|D2HPW2) DNA-directed RNA polymerase (Fragment) ... 173 6e-40
C1GHL1_PARBD (tr|C1GHL1) DNA-directed RNA polymerase OS=Paracocc... 173 7e-40
K7G6H8_PELSI (tr|K7G6H8) DNA-directed RNA polymerase OS=Pelodisc... 172 8e-40
A5H2F1_9LECA (tr|A5H2F1) DNA-directed RNA polymerase (Fragment) ... 172 8e-40
E9RHF6_9ORTH (tr|E9RHF6) DNA-directed RNA polymerase (Fragment) ... 172 8e-40
A3GID7_PICST (tr|A3GID7) DNA-directed RNA polymerase OS=Scheffer... 172 9e-40
F7B769_ORNAN (tr|F7B769) DNA-directed RNA polymerase OS=Ornithor... 172 1e-39
F6XI89_CALJA (tr|F6XI89) DNA-directed RNA polymerase OS=Callithr... 172 1e-39
A1YIC0_9FUNG (tr|A1YIC0) DNA-directed RNA polymerase (Fragment) ... 172 1e-39
E9RHF1_9NEOP (tr|E9RHF1) DNA-directed RNA polymerase (Fragment) ... 172 1e-39
F8TBT6_9EUKA (tr|F8TBT6) DNA-directed RNA polymerase (Fragment) ... 172 1e-39
E9RHG6_9NEOP (tr|E9RHG6) DNA-directed RNA polymerase (Fragment) ... 172 1e-39
L7LRQ3_9ACAR (tr|L7LRQ3) DNA-directed RNA polymerase OS=Rhipicep... 172 1e-39
M7NUD9_9ASCO (tr|M7NUD9) Uncharacterized protein OS=Pneumocystis... 172 2e-39
E9RHG5_9NEOP (tr|E9RHG5) DNA-directed RNA polymerase (Fragment) ... 171 2e-39
Q2PYS6_9FUNG (tr|Q2PYS6) DNA-directed RNA polymerase (Fragment) ... 171 2e-39
B4MT76_DROWI (tr|B4MT76) DNA-directed RNA polymerase OS=Drosophi... 171 2e-39
Q2PYS1_9FUNG (tr|Q2PYS1) DNA-directed RNA polymerase (Fragment) ... 171 2e-39
Q25312_LEIMA (tr|Q25312) DNA-directed RNA polymerase OS=Leishman... 171 2e-39
L0PB90_PNEJ8 (tr|L0PB90) DNA-directed RNA polymerase OS=Pneumocy... 171 2e-39
E9RHG1_9NEOP (tr|E9RHG1) DNA-directed RNA polymerase (Fragment) ... 171 2e-39
Q0CS43_ASPTN (tr|Q0CS43) DNA-directed RNA polymerase OS=Aspergil... 171 2e-39
A7EYX3_SCLS1 (tr|A7EYX3) DNA-directed RNA polymerase OS=Scleroti... 171 2e-39
Q01DV6_OSTTA (tr|Q01DV6) DNA-directed RNA polymerase OS=Ostreoco... 171 2e-39
A1YIC1_BLAEM (tr|A1YIC1) DNA-directed RNA polymerase (Fragment) ... 171 2e-39
M1WGG0_CLAPU (tr|M1WGG0) DNA-directed RNA polymerase OS=Clavicep... 171 2e-39
E9RHF3_9NEOP (tr|E9RHF3) DNA-directed RNA polymerase OS=Galloisi... 171 2e-39
Q0PQ04_9LECA (tr|Q0PQ04) DNA-directed RNA polymerase (Fragment) ... 171 3e-39
D8M7F6_BLAHO (tr|D8M7F6) DNA-directed RNA polymerase OS=Blastocy... 171 3e-39
E9F7H3_METAR (tr|E9F7H3) DNA-directed RNA polymerase OS=Metarhiz... 171 3e-39
C5PAJ4_COCP7 (tr|C5PAJ4) DNA-directed RNA polymerase OS=Coccidio... 171 3e-39
M7WX53_RHOTO (tr|M7WX53) DNA-directed RNA polymerase II subunit ... 171 3e-39
E9DRB7_METAQ (tr|E9DRB7) DNA-directed RNA polymerase OS=Metarhiz... 171 3e-39
E9CY52_COCPS (tr|E9CY52) DNA-directed RNA polymerase OS=Coccidio... 171 3e-39
E9B260_LEIMU (tr|E9B260) DNA-directed RNA polymerase OS=Leishman... 170 4e-39
F0UGB6_AJEC8 (tr|F0UGB6) DNA-directed RNA polymerase OS=Ajellomy... 170 4e-39
F7W681_SORMK (tr|F7W681) DNA-directed RNA polymerase OS=Sordaria... 170 4e-39
L2FKX2_COLGN (tr|L2FKX2) DNA-directed RNA polymerase OS=Colletot... 170 4e-39
J3KB55_COCIM (tr|J3KB55) DNA-directed RNA polymerase OS=Coccidio... 170 4e-39
E9RHG4_9NEOP (tr|E9RHG4) DNA-directed RNA polymerase (Fragment) ... 170 4e-39
Q2PYS4_SPIPN (tr|Q2PYS4) DNA-directed RNA polymerase (Fragment) ... 170 4e-39
H2Z9E7_CIOSA (tr|H2Z9E7) DNA-directed RNA polymerase (Fragment) ... 170 4e-39
E9RHF7_9ORTH (tr|E9RHF7) DNA-directed RNA polymerase OS=Teleogry... 170 4e-39
H8I866_METCZ (tr|H8I866) DNA-directed RNA polymerase OS=Methanoc... 170 5e-39
Q2PYR7_SMICU (tr|Q2PYR7) DNA-directed RNA polymerase (Fragment) ... 170 5e-39
E9RHF4_KARBI (tr|E9RHF4) DNA-directed RNA polymerase OS=Karoopha... 170 5e-39
A5H2E6_9LECA (tr|A5H2E6) DNA-directed RNA polymerase (Fragment) ... 170 6e-39
E9RHF2_9NEOP (tr|E9RHF2) DNA-directed RNA polymerase (Fragment) ... 170 6e-39
A6QYA7_AJECN (tr|A6QYA7) DNA-directed RNA polymerase OS=Ajellomy... 170 6e-39
K5W9B5_PHACS (tr|K5W9B5) DNA-directed RNA polymerase OS=Phaneroc... 169 6e-39
E9RHG3_9NEOP (tr|E9RHG3) DNA-directed RNA polymerase (Fragment) ... 169 7e-39
A7J586_9LECA (tr|A7J586) DNA-directed RNA polymerase (Fragment) ... 169 7e-39
L8G0N1_GEOD2 (tr|L8G0N1) DNA-directed RNA polymerase OS=Geomyces... 169 7e-39
Q0PQ02_9LECA (tr|Q0PQ02) DNA-directed RNA polymerase (Fragment) ... 169 7e-39
Q2PYR0_9FUNG (tr|Q2PYR0) DNA-directed RNA polymerase (Fragment) ... 169 7e-39
C4JY44_UNCRE (tr|C4JY44) DNA-directed RNA polymerase OS=Uncinoca... 169 8e-39
O28391_ARCFU (tr|O28391) DNA-directed RNA polymerase OS=Archaeog... 169 8e-39
I7AWA0_9ASCO (tr|I7AWA0) DNA-directed RNA polymerase (Fragment) ... 169 9e-39
A5H283_9LECA (tr|A5H283) DNA-directed RNA polymerase (Fragment) ... 169 9e-39
Q0PQ13_9LECA (tr|Q0PQ13) DNA-directed RNA polymerase (Fragment) ... 169 1e-38
K4MCM5_9EURY (tr|K4MCM5) DNA-directed RNA polymerase OS=Methanol... 169 1e-38
G0RFM5_HYPJQ (tr|G0RFM5) DNA-directed RNA polymerase OS=Hypocrea... 169 1e-38
A7J5B2_9LECA (tr|A7J5B2) DNA-directed RNA polymerase (Fragment) ... 169 1e-38
M7B9D5_CHEMY (tr|M7B9D5) DNA-directed RNA polymerase III subunit... 169 1e-38
K1QQG7_CRAGI (tr|K1QQG7) DNA-directed RNA polymerase OS=Crassost... 168 1e-38
A4HJP9_LEIBR (tr|A4HJP9) DNA-directed RNA polymerase OS=Leishman... 168 1e-38
H1UXB7_COLHI (tr|H1UXB7) DNA-directed RNA polymerase OS=Colletot... 168 2e-38
C1E5P6_MICSR (tr|C1E5P6) DNA-directed RNA polymerase OS=Micromon... 168 2e-38
Q0PQ01_9LECA (tr|Q0PQ01) DNA-directed RNA polymerase (Fragment) ... 168 2e-38
J4HY00_FIBRA (tr|J4HY00) DNA-directed RNA polymerase OS=Fibropor... 168 2e-38
G7E0H8_MIXOS (tr|G7E0H8) DNA-directed RNA polymerase OS=Mixia os... 168 2e-38
F8S1G5_9EUGL (tr|F8S1G5) DNA-directed RNA polymerase (Fragment) ... 168 2e-38
C4Y5N4_CLAL4 (tr|C4Y5N4) DNA-directed RNA polymerase OS=Clavispo... 168 2e-38
Q5CK97_CRYHO (tr|Q5CK97) DNA-directed RNA polymerase OS=Cryptosp... 168 2e-38
F4NYT6_BATDJ (tr|F4NYT6) DNA-directed RNA polymerase OS=Batracho... 168 2e-38
B6H2R1_PENCW (tr|B6H2R1) DNA-directed RNA polymerase OS=Penicill... 168 2e-38
R7QR74_CHOCR (tr|R7QR74) Stackhouse genomic scaffold, scaffold_5... 168 2e-38
C5DY31_ZYGRC (tr|C5DY31) DNA-directed RNA polymerase OS=Zygosacc... 168 2e-38
A5H295_9LECA (tr|A5H295) DNA-directed RNA polymerase (Fragment) ... 168 2e-38
C0JR66_MAIZE (tr|C0JR66) DNA-directed RNA polymerase OS=Zea mays... 167 2e-38
Q9BJ59_LEPSE (tr|Q9BJ59) DNA-directed RNA polymerase OS=Leptomon... 167 2e-38
Q2PYS7_BATDE (tr|Q2PYS7) DNA-directed RNA polymerase (Fragment) ... 167 3e-38
Q5CWY0_CRYPI (tr|Q5CWY0) DNA-directed RNA polymerase OS=Cryptosp... 167 3e-38
F6H0D9_VITVI (tr|F6H0D9) DNA-directed RNA polymerase OS=Vitis vi... 167 3e-38
G3AEV6_SPAPN (tr|G3AEV6) DNA-directed RNA polymerase OS=Spathasp... 167 3e-38
Q71EU0_CYCRE (tr|Q71EU0) DNA-directed RNA polymerase (Fragment) ... 167 3e-38
B7SNW9_ILLPA (tr|B7SNW9) DNA-directed RNA polymerase (Fragment) ... 167 3e-38
Q7YYV9_CRYPV (tr|Q7YYV9) DNA-directed RNA polymerase OS=Cryptosp... 167 3e-38
H0Z7T8_TAEGU (tr|H0Z7T8) DNA-directed RNA polymerase OS=Taeniopy... 167 3e-38
B7SNX0_LIRTU (tr|B7SNX0) DNA-directed RNA polymerase (Fragment) ... 167 4e-38
G4T8R1_PIRID (tr|G4T8R1) DNA-directed RNA polymerase OS=Piriform... 167 4e-38
M0VV75_HORVD (tr|M0VV75) DNA-directed RNA polymerase OS=Hordeum ... 167 4e-38
Q4N0F9_THEPA (tr|Q4N0F9) DNA-directed RNA polymerase OS=Theileri... 167 4e-38
A1YIB6_9FUNG (tr|A1YIB6) DNA-directed RNA polymerase (Fragment) ... 167 4e-38
D6WDY7_TRICA (tr|D6WDY7) DNA-directed RNA polymerase OS=Triboliu... 167 5e-38
A1CNZ4_ASPCL (tr|A1CNZ4) DNA-directed RNA polymerase OS=Aspergil... 167 5e-38
A5H2E2_9LECA (tr|A5H2E2) DNA-directed RNA polymerase (Fragment) ... 167 5e-38
F2SXT8_TRIRC (tr|F2SXT8) DNA-directed RNA polymerase OS=Trichoph... 167 5e-38
A1YIC2_9FUNG (tr|A1YIC2) DNA-directed RNA polymerase (Fragment) ... 167 5e-38
E5R1G4_ARTGP (tr|E5R1G4) DNA-directed RNA polymerase OS=Arthrode... 167 5e-38
A5H297_9LECA (tr|A5H297) DNA-directed RNA polymerase (Fragment) ... 167 5e-38
A7J5B0_9LECA (tr|A7J5B0) DNA-directed RNA polymerase (Fragment) ... 167 5e-38
E9GLF9_DAPPU (tr|E9GLF9) DNA-directed RNA polymerase OS=Daphnia ... 166 5e-38
A5H2F5_9LECA (tr|A5H2F5) DNA-directed RNA polymerase (Fragment) ... 166 5e-38
C5FCL2_ARTOC (tr|C5FCL2) DNA-directed RNA polymerase OS=Arthrode... 166 5e-38
A7J593_9LECA (tr|A7J593) DNA-directed RNA polymerase (Fragment) ... 166 6e-38
A1YIA6_TRIRU (tr|A1YIA6) DNA-directed RNA polymerase (Fragment) ... 166 6e-38
N6TMN4_9CUCU (tr|N6TMN4) Uncharacterized protein (Fragment) OS=D... 166 6e-38
F0ZE84_DICPU (tr|F0ZE84) DNA-directed RNA polymerase OS=Dictyost... 166 7e-38
E7R7W7_PICAD (tr|E7R7W7) DNA-directed RNA polymerase OS=Pichia a... 166 7e-38
I4Y971_WALSC (tr|I4Y971) DNA-directed RNA polymerase OS=Wallemia... 166 7e-38
F2PRD9_TRIEC (tr|F2PRD9) DNA-directed RNA polymerase OS=Trichoph... 166 8e-38
D4D6M6_TRIVH (tr|D4D6M6) DNA-directed RNA polymerase OS=Trichoph... 166 8e-38
H9KIU3_APIME (tr|H9KIU3) DNA-directed RNA polymerase OS=Apis mel... 166 8e-38
R7VH83_9ANNE (tr|R7VH83) Uncharacterized protein OS=Capitella te... 166 8e-38
M4N7H2_9ASCO (tr|M4N7H2) RNA polymerase I (Fragment) OS=Ascoidea... 166 8e-38
I7A0A9_9ASCO (tr|I7A0A9) DNA-directed RNA polymerase (Fragment) ... 166 9e-38
J3P867_GAGT3 (tr|J3P867) DNA-directed RNA polymerase OS=Gaeumann... 166 9e-38
K9HL91_AGABB (tr|K9HL91) DNA-directed RNA polymerase OS=Agaricus... 166 9e-38
A7J591_9LECA (tr|A7J591) DNA-directed RNA polymerase (Fragment) ... 166 9e-38
C5MI79_CANTT (tr|C5MI79) DNA-directed RNA polymerase (Fragment) ... 166 1e-37
F2QZM4_PICP7 (tr|F2QZM4) DNA-directed RNA polymerase OS=Komagata... 166 1e-37
K9GE05_PEND1 (tr|K9GE05) DNA-directed RNA polymerase OS=Penicill... 166 1e-37
K9G2F7_PEND2 (tr|K9G2F7) DNA-directed RNA polymerase OS=Penicill... 166 1e-37
A5H275_9LECA (tr|A5H275) DNA-directed RNA polymerase (Fragment) ... 166 1e-37
K5WYR5_AGABU (tr|K5WYR5) DNA-directed RNA polymerase OS=Agaricus... 166 1e-37
R9AD30_WALIC (tr|R9AD30) DNA-directed RNA polymerase II subunit ... 165 1e-37
G1T3C7_RABIT (tr|G1T3C7) DNA-directed RNA polymerase OS=Oryctola... 165 1e-37
D4AV18_ARTBC (tr|D4AV18) DNA-directed RNA polymerase OS=Arthrode... 165 1e-37
Q2PYR3_9FUNG (tr|Q2PYR3) DNA-directed RNA polymerase (Fragment) ... 165 1e-37
H8Z921_NEMS1 (tr|H8Z921) DNA-directed RNA polymerase OS=Nematoci... 165 1e-37
F8TBT7_9EUKA (tr|F8TBT7) DNA-directed RNA polymerase (Fragment) ... 165 2e-37
F6WHF1_CALJA (tr|F6WHF1) DNA-directed RNA polymerase OS=Callithr... 165 2e-37
G8BEH9_CANPC (tr|G8BEH9) DNA-directed RNA polymerase OS=Candida ... 165 2e-37
F6SUC2_CIOIN (tr|F6SUC2) DNA-directed RNA polymerase OS=Ciona in... 165 2e-37
C4R7G6_PICPG (tr|C4R7G6) DNA-directed RNA polymerase OS=Komagata... 165 2e-37
Q4UCP5_THEAN (tr|Q4UCP5) DNA-directed RNA polymerase OS=Theileri... 165 2e-37
A5H279_9LECA (tr|A5H279) DNA-directed RNA polymerase (Fragment) ... 165 2e-37
B6QAY2_PENMQ (tr|B6QAY2) DNA-directed RNA polymerase OS=Penicill... 165 2e-37
B7SNW7_CERDE (tr|B7SNW7) DNA-directed RNA polymerase (Fragment) ... 165 2e-37
D1JEK2_9ARCH (tr|D1JEK2) DNA-directed RNA polymerase OS=uncultur... 165 2e-37
F1S2E6_PIG (tr|F1S2E6) DNA-directed RNA polymerase OS=Sus scrofa... 165 2e-37
F7DXS0_HORSE (tr|F7DXS0) DNA-directed RNA polymerase OS=Equus ca... 164 2e-37
E9BZL9_CAPO3 (tr|E9BZL9) DNA-directed RNA polymerase OS=Capsaspo... 164 2e-37
Q71ET4_AMBTC (tr|Q71ET4) DNA-directed RNA polymerase (Fragment) ... 164 2e-37
Q71ET6_MAGSO (tr|Q71ET6) DNA-directed RNA polymerase (Fragment) ... 164 2e-37
Q71EU1_9SPER (tr|Q71EU1) DNA-directed RNA polymerase (Fragment) ... 164 2e-37
Q2PYQ8_9GLOM (tr|Q2PYQ8) DNA-directed RNA polymerase (Fragment) ... 164 2e-37
R0K3C4_ANAPL (tr|R0K3C4) DNA-directed RNA polymerase III subunit... 164 2e-37
A7J587_9LECA (tr|A7J587) DNA-directed RNA polymerase (Fragment) ... 164 2e-37
F6VYG1_CALJA (tr|F6VYG1) DNA-directed RNA polymerase OS=Callithr... 164 2e-37
K7TDS3_9HYPO (tr|K7TDS3) DNA-directed RNA polymerase OS=Neotypho... 164 2e-37
Q2U3T5_ASPOR (tr|Q2U3T5) DNA-directed RNA polymerase OS=Aspergil... 164 3e-37
I7ZWF4_ASPO3 (tr|I7ZWF4) DNA-directed RNA polymerase OS=Aspergil... 164 3e-37
G4VIM5_SCHMA (tr|G4VIM5) DNA-directed RNA polymerase OS=Schistos... 164 3e-37
J4WLL9_BEAB2 (tr|J4WLL9) DNA-directed RNA polymerase OS=Beauveri... 164 3e-37
G9MRU6_HYPVG (tr|G9MRU6) DNA-directed RNA polymerase OS=Hypocrea... 164 3e-37
A5H2E7_9LECA (tr|A5H2E7) DNA-directed RNA polymerase (Fragment) ... 164 3e-37
Q9HGZ5_ASPOZ (tr|Q9HGZ5) DNA-directed RNA polymerase OS=Aspergil... 164 3e-37
Q2ULA0_ASPOR (tr|Q2ULA0) DNA-directed RNA polymerase OS=Aspergil... 164 3e-37
I8TRP3_ASPO3 (tr|I8TRP3) DNA-directed RNA polymerase OS=Aspergil... 164 3e-37
K7TW01_9HYPO (tr|K7TW01) DNA-directed RNA polymerase OS=Epichloe... 164 3e-37
K7UAT3_EPITY (tr|K7UAT3) DNA-directed RNA polymerase OS=Epichloe... 164 3e-37
B6QI35_PENMQ (tr|B6QI35) DNA-directed RNA polymerase OS=Penicill... 164 3e-37
Q0PQ14_9LECA (tr|Q0PQ14) DNA-directed RNA polymerase (Fragment) ... 164 4e-37
K7TLD6_9HYPO (tr|K7TLD6) DNA-directed RNA polymerase OS=Epichloe... 164 4e-37
J4C8U6_THEOR (tr|J4C8U6) DNA-directed RNA polymerase OS=Theileri... 164 4e-37
L5KDU6_PTEAL (tr|L5KDU6) DNA-directed RNA polymerase OS=Pteropus... 164 4e-37
I7B533_9ASCO (tr|I7B533) DNA-directed RNA polymerase (Fragment) ... 164 4e-37
B9SXC0_RICCO (tr|B9SXC0) DNA-directed RNA polymerase OS=Ricinus ... 164 4e-37
A1D1U9_NEOFI (tr|A1D1U9) DNA-directed RNA polymerase OS=Neosarto... 164 4e-37
F1NIK7_CHICK (tr|F1NIK7) DNA-directed RNA polymerase OS=Gallus g... 164 4e-37
G1PII8_MYOLU (tr|G1PII8) DNA-directed RNA polymerase OS=Myotis l... 164 4e-37
K7TVY9_EPITY (tr|K7TVY9) DNA-directed RNA polymerase OS=Epichloe... 164 4e-37
K7XFL8_9EURO (tr|K7XFL8) DNA-directed RNA polymerase (Fragment) ... 164 4e-37
K7TLD1_EPIEL (tr|K7TLD1) DNA-directed RNA polymerase OS=Epichloe... 164 4e-37
G0VJ35_NAUCC (tr|G0VJ35) DNA-directed RNA polymerase OS=Naumovoz... 163 4e-37
Q0PPZ8_9LECA (tr|Q0PPZ8) DNA-directed RNA polymerase (Fragment) ... 163 5e-37
B8N404_ASPFN (tr|B8N404) DNA-directed RNA polymerase OS=Aspergil... 163 5e-37
E3GYR8_METFV (tr|E3GYR8) DNA-directed RNA polymerase OS=Methanot... 163 5e-37
K7THT1_9HYPO (tr|K7THT1) DNA-directed RNA polymerase OS=Epichloe... 163 5e-37
K7TDS0_9HYPO (tr|K7TDS0) DNA-directed RNA polymerase OS=Epichloe... 163 5e-37
F8S1G7_9EUKA (tr|F8S1G7) DNA-directed RNA polymerase (Fragment) ... 163 5e-37
Q4WRY3_ASPFU (tr|Q4WRY3) DNA-directed RNA polymerase OS=Neosarto... 163 5e-37
B0XMU6_ASPFC (tr|B0XMU6) DNA-directed RNA polymerase OS=Neosarto... 163 5e-37
K7TW30_NEOAO (tr|K7TW30) DNA-directed RNA polymerase OS=Neotypho... 163 5e-37
K7UAU5_9HYPO (tr|K7UAU5) DNA-directed RNA polymerase OS=Clavicep... 163 6e-37
H2DFX4_9LECA (tr|H2DFX4) DNA-directed RNA polymerase OS=Peltiger... 163 6e-37
B7SNX2_PAPOR (tr|B7SNX2) DNA-directed RNA polymerase (Fragment) ... 163 6e-37
D5U3G6_THEAM (tr|D5U3G6) DNA-directed RNA polymerase OS=Thermosp... 163 6e-37
M7ZU77_TRIUA (tr|M7ZU77) DNA-directed RNA polymerase II subunit ... 163 6e-37
I7A0B5_9ASCO (tr|I7A0B5) DNA-directed RNA polymerase (Fragment) ... 163 6e-37
F8SIL3_9EURO (tr|F8SIL3) DNA-directed RNA polymerase (Fragment) ... 163 7e-37
E1QRA0_VULDI (tr|E1QRA0) DNA-directed RNA polymerase OS=Vulcanis... 163 7e-37
B7SNW6_BETVU (tr|B7SNW6) DNA-directed RNA polymerase (Fragment) ... 163 7e-37
B7Z6H4_HUMAN (tr|B7Z6H4) DNA-directed RNA polymerase OS=Homo sap... 163 7e-37
Q2PYQ5_9FUNG (tr|Q2PYQ5) DNA-directed RNA polymerase (Fragment) ... 162 7e-37
A1YIB4_9FUNG (tr|A1YIB4) DNA-directed RNA polymerase (Fragment) ... 162 8e-37
K7THT8_9HYPO (tr|K7THT8) DNA-directed RNA polymerase OS=Periglan... 162 8e-37
K7D6W6_PANTR (tr|K7D6W6) DNA-directed RNA polymerase OS=Pan trog... 162 9e-37
K7TLE2_BALOB (tr|K7TLE2) DNA-directed RNA polymerase OS=Balansia... 162 9e-37
B7SNX3_PERAE (tr|B7SNX3) DNA-directed RNA polymerase (Fragment) ... 162 9e-37
Q0W8G9_UNCMA (tr|Q0W8G9) DNA-directed RNA polymerase OS=Uncultur... 162 9e-37
Q5BF71_EMENI (tr|Q5BF71) DNA-directed RNA polymerase OS=Emericel... 162 1e-36
Q71ET3_PSINU (tr|Q71ET3) DNA-directed RNA polymerase (Fragment) ... 162 1e-36
K7LNL8_SOYBN (tr|K7LNL8) DNA-directed RNA polymerase OS=Glycine ... 162 1e-36
>K7MDF5_SOYBN (tr|K7MDF5) DNA-directed RNA polymerase OS=Glycine max PE=3 SV=1
Length = 2082
Score = 2262 bits (5862), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1143/1652 (69%), Positives = 1295/1652 (78%), Gaps = 76/1652 (4%)
Query: 1 MEENPTLSFLDGNVVGIQFGMATRQEICTXXXXXXXXXXXXXXXNPFLGLPLEYGRCESC 60
ME+NP S LDG VVGI+FGMATRQEICT NPFLGLPLE+GRCESC
Sbjct: 1 MEDNPPSSVLDGTVVGIKFGMATRQEICTASISDSSISHASQLSNPFLGLPLEFGRCESC 60
Query: 61 GTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKMKKTKFPSSSSGLAQRL 120
GTSE GKCEGHFGYIELP+PIYHPSH+S+LK+MLS+VCLNCLK++KTK P+SSSGLAQRL
Sbjct: 61 GTSEVGKCEGHFGYIELPIPIYHPSHISDLKRMLSMVCLNCLKLRKTKLPASSSGLAQRL 120
Query: 121 LSPCCQEPNAAQVSIREVKTGDGACYLVLKVSKSKMQDGFWRFLDKYGYRYEVDHTRALL 180
+SPCCQE AA VSIREVKT DGACYL LKVSKSKMQ+GFW FL+KYGYRY DHTRALL
Sbjct: 121 ISPCCQEDKAALVSIREVKTSDGACYLALKVSKSKMQNGFWSFLEKYGYRYGGDHTRALL 180
Query: 181 PCEVMEMIKRFPLETKKKLAGKGYFPQDGYVIKYLPVPPNCLXXXXXXXXXXXXXXXXXX 240
PCE ME+IKR P+ETKKKLAGKGYFPQDGYV+KYLPVPPNCL
Sbjct: 181 PCEAMEIIKRIPIETKKKLAGKGYFPQDGYVLKYLPVPPNCLSVPEVSDGVSVMSSDPSI 240
Query: 241 TFLRKLLRKVEVIRSSRSGEPNFESHQVEANDLQSVVDQYLQIRGCAKPARDIETHFGVN 300
T LRKLLRKVE+I+SSRSGEPNFESH VEANDLQSVVDQY QIRG +KPARDIETHFGVN
Sbjct: 241 TILRKLLRKVEIIKSSRSGEPNFESHHVEANDLQSVVDQYFQIRGTSKPARDIETHFGVN 300
Query: 301 KELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVN 360
KEL+ +S KAWL+KM++LFI KGSGFSSR+VITGD YKRINEVGIP E+AQRITFEERVN
Sbjct: 301 KELTASSTKAWLEKMRTLFIRKGSGFSSRNVITGDCYKRINEVGIPVEVAQRITFEERVN 360
Query: 361 SHNMCYLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPP 420
HN+ YLQKLVDE+LCL YKEG STYSLREGSKGH YLKPGQIVHRRIMDGDIVFINRPP
Sbjct: 361 IHNIRYLQKLVDEHLCLTYKEGGSTYSLREGSKGHIYLKPGQIVHRRIMDGDIVFINRPP 420
Query: 421 TTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVE 480
TTHKHSLQAL VYIH+DHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVE
Sbjct: 421 TTHKHSLQALYVYIHEDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVE 480
Query: 481 KQLLSSHXXXXXXXXXXXXXXXXXXXVKKGFMDRAAANQMAMFLSLPLPQPALLKAGSGD 540
QLLSSH VK+ F DRAAANQ+AMF+ LPLP+PALLKA SGD
Sbjct: 481 NQLLSSHSGNLNLQLSTDSLLSLKMLVKRCFFDRAAANQLAMFILLPLPRPALLKASSGD 540
Query: 541 CYWTSTQILQCALPLSFDCTGGRYLIRESDILGFDLGRDVLPAVINEIAASVFFGKGPQE 600
WTS QILQCALPL FDCTGGRYLIR+S+IL F+ RDVLPA +NEIAASVFFGKGP+E
Sbjct: 541 ACWTSIQILQCALPLGFDCTGGRYLIRQSEILEFEFSRDVLPATVNEIAASVFFGKGPKE 600
Query: 601 ALNFFDVLQPFLMECIFSNGFSVGLHDFSISGAVKRITDRNIGKVSPLLYQLRFIYNELV 660
ALNFFDVLQPFLME +F+ GFSV L +FSIS A+KRI ++IGKVS LLYQLR +YNELV
Sbjct: 601 ALNFFDVLQPFLMESLFAEGFSVSLEEFSISRAIKRIIRKSIGKVSSLLYQLRSLYNELV 660
Query: 661 AQQLEKHMQDIELPAIKFASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSK 720
AQQLEKH++D+ELP I FA KS++LGD+IDSKSKSA+DKV QQIGFLGQQLF RGR YSK
Sbjct: 661 AQQLEKHIRDVELPIINFALKSTKLGDLIDSKSKSAIDKVVQQIGFLGQQLFDRGRFYSK 720
Query: 721 GLLEDVASHFKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGL 780
GL++DVASHF KC YDGDGYPSAEYGLLKGCFF+GLDP+EE+VHSISTREIMVRSSRGL
Sbjct: 721 GLVDDVASHFHAKCCYDGDGYPSAEYGLLKGCFFNGLDPYEEMVHSISTREIMVRSSRGL 780
Query: 781 SEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGLKAGDNASYLFPAGEHVGVLA 840
SEPGTLFKNLMAILRDVV+CYDGTVRN+CSNSIIQFEYG++AGD + +LFPAGE VGVLA
Sbjct: 781 SEPGTLFKNLMAILRDVVICYDGTVRNICSNSIIQFEYGIQAGDKSEHLFPAGEPVGVLA 840
Query: 841 ATAMSNPAYKAVLDASPSSNCSWELMKEILLCKVHFRNEPIDRRVILYLNDCDCGRSYCR 900
ATAMSNPAYKAVLDASPSSN SWELMKEILLCKV+FRNE +DRRVILYLNDCDCG SYCR
Sbjct: 841 ATAMSNPAYKAVLDASPSSNSSWELMKEILLCKVNFRNELVDRRVILYLNDCDCGGSYCR 900
Query: 901 ENAAYAVKNQLRKVSLKDTAVDFIVEYQQQRKRK-GSEIDAGLVGHIHLDEVKLEELKIN 959
ENAAY+VK+QLRKVSLKD AV+FI+EYQQQR +K SE D GLVGHI+LDE+ LEELKI+
Sbjct: 901 ENAAYSVKDQLRKVSLKDAAVEFIIEYQQQRTQKENSETDVGLVGHIYLDEMMLEELKIS 960
Query: 960 MAEVFQRCQEKLDSFNRKRKFNQIFKRTELFFSESCVSPNFSAPCLTFIWPAGDGNDLHE 1019
MA VF +C E+L SF++K+K NQ K EL FSESC S + +APCLTF W +DL
Sbjct: 961 MAYVFDKCHERLKSFSQKKKVNQSLKNIELSFSESCSSSHPAAPCLTF-WLKNYDSDLDN 1019
Query: 1020 TTKILADTICPALLDTIIQGDPRINSANIIWVNPDTNTWVRNPSKSSNGELALDIILEKE 1079
K+LA+ ICP L TIIQGDPRI+SA+IIWV+PDTNTWVRNP KSSNGELALDIILEKE
Sbjct: 1020 AVKVLAEKICPVLFKTIIQGDPRISSASIIWVSPDTNTWVRNPYKSSNGELALDIILEKE 1079
Query: 1080 SIKQNGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQIQELLGISCTFDQAIQRLAASVKMV 1139
++KQ+GDAWR+VLD+CLPVLHLIDTRRSIPYAIKQIQELLGISCTFDQAIQR+AASVKMV
Sbjct: 1080 AVKQSGDAWRVVLDACLPVLHLIDTRRSIPYAIKQIQELLGISCTFDQAIQRVAASVKMV 1139
Query: 1140 AKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDATLFTPKRCFERAAE 1199
AKGVLREHLILLASSMTCGGNLVGFN GGYKAL+RQLNIQVPFTDATLFTPK+CFERAAE
Sbjct: 1140 AKGVLREHLILLASSMTCGGNLVGFNIGGYKALSRQLNIQVPFTDATLFTPKKCFERAAE 1199
Query: 1200 KCHTDSLSSIVASCSWGKPVAVGTGSKFDVLWDAKEIKSNDLDGMDVYNFLHMVKSLTNG 1259
KCHTDSLSSIVASCSWGK VAVGTGSKFDV+WDA EIKSN+++GMDVY+FLHMVKS TNG
Sbjct: 1200 KCHTDSLSSIVASCSWGKHVAVGTGSKFDVVWDANEIKSNEIEGMDVYSFLHMVKSFTNG 1259
Query: 1260 EEENNACXXXXXXXXXXXXNADYSLSPQHTSGVDAVFEETFEAMNGPESNGWGSNTDRTE 1319
EEE +AC D +SPQH SG +AVFEE E +NG SNGW ++++ E
Sbjct: 1260 EEETDACLGEDIDDLLEEEYMDLGMSPQHNSGFEAVFEENPEVLNGSTSNGWDVSSNQGE 1319
Query: 1320 TNSTQWSAW-ESNKAETKDGGSQRVHEDSWTSRDVMKDDSQMTNAWDGNV--EQTKTISN 1376
+ + +WS W SNKAE KDG S+ ++SW + V ++DS +N W + +QTKT SN
Sbjct: 1320 SKTNEWSGWASSNKAEIKDGRSEIAPKNSW-GKTVNQEDSSKSNPWSTSTIADQTKTKSN 1378
Query: 1377 DWTAWGKNKSEI-----QDNVAEKAEG--ECGSSEKWKTAVIQEGSSKSNAWKSNI---- 1425
+W+AWG NKSEI N E +G E W V QE SSKSNAW ++
Sbjct: 1379 EWSAWGSNKSEIPVGWASSNKTEIKDGRSETAQENSWGKTVNQEDSSKSNAWNTSTTVDH 1438
Query: 1426 ----------------------EQRSDEDSWTSQKLKADVIQ-DSSKPSSWGA----KPK 1458
+ EDSW S K KADV Q D+S+ +W A + K
Sbjct: 1439 ANTKSNEWSAWGSNQSEIPAGGSKAVQEDSWGSSKWKADVAQEDNSRLGAWDANAADQTK 1498
Query: 1459 SNDSSNWGRNKDEIQDVVSRRAEDDS-------------WSSKKQLSSDATQEDSSKFSF 1505
S++ S WG+ KD Q+ SR D+ W KK D TQED+S+
Sbjct: 1499 SSEWSGWGKKKDVTQEDNSRLGAWDANAADQTKSRDWSGWGKKK----DITQEDNSRLGA 1554
Query: 1506 WGGNKDTTKPKSNDWSSWGGNRDGIQDGGSKRAQDDS-------------WSSQKDVTRE 1552
W N + KS++WS WG +D Q+ S+ D+ W +K+VT+E
Sbjct: 1555 WDANA-ADQTKSSEWSGWGKKKDVTQEDNSRLGAWDANTADQTKSNEWSGWGKKKEVTQE 1613
Query: 1553 SSSKVDAWGANNEASNPKSNDWSAWGKNKDGT 1584
+S++ AW AN A KSN+WS WGK K+ T
Sbjct: 1614 DNSRLGAWDANT-ADQTKSNEWSGWGKKKEVT 1644
Score = 107 bits (266), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 102/315 (32%), Positives = 154/315 (48%), Gaps = 57/315 (18%)
Query: 1309 NGWGSNTDRTETNSTQWSAWESNKAETKDGGSQRVHEDSWTS----RDVMKDDSQMTNAW 1364
+GWG D T+ ++++ AW++N A+ + W+ +DV ++D+ AW
Sbjct: 1536 SGWGKKKDITQEDNSRLGAWDANAAD-------QTKSSEWSGWGKKKDVTQEDNSRLGAW 1588
Query: 1365 DGNV-EQTKTISNDWTAWGKNKSEIQD----------NVAEKAEGECGSSEKWKTAVIQE 1413
D N +QTK SN+W+ WGK K Q+ N A++ + S K V QE
Sbjct: 1589 DANTADQTK--SNEWSGWGKKKEVTQEDNSRLGAWDANTADQTKSNEWSGWGKKKEVTQE 1646
Query: 1414 GSSKSNAWKSNIEQRSDEDSWTSQKLKADVIQ-DSSKPSSWGA----KPKSNDSSNWGRN 1468
+S+ AW +N E ++ + W+ K DV Q D+S+ +W A + KSN+ S+WG+
Sbjct: 1647 DNSRFGAWDANAEDQTKSNEWSGWGKKKDVTQEDNSRLGAWDANAADQTKSNEWSDWGKK 1706
Query: 1469 KDEIQDVVSRRAEDDSWSSKKQLSSDATQEDSSKFSFWGGNK-DTTKPKSNDWSSWGGNR 1527
K +V DSW S K+ TQED+S WG N+ D K KS++WSSWG N+
Sbjct: 1707 K----EVTQEDNVQDSWGSGKR-KDKVTQEDNSGSGGWGANRTDLAKSKSSEWSSWGKNK 1761
Query: 1528 DGIQDGGSKRAQDDSWSSQK---DVTRESSSKV------------------DAWGANNEA 1566
I GGS+ Q+DSW S K D +E+S DAW + N
Sbjct: 1762 SEIPAGGSENVQNDSWGSGKLEDDTQKENSGSAWVRNKAETIDGGSEKPQEDAWNSGNWK 1821
Query: 1567 SNPKSNDWSAWGKNK 1581
+ K + ++WGK K
Sbjct: 1822 AESKVGN-ASWGKPK 1835
Score = 70.1 bits (170), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 73/285 (25%), Positives = 119/285 (41%), Gaps = 77/285 (27%)
Query: 1307 ESNGWGSNTDRTETNSTQWSAWESNKAETKDGGSQRVHEDSWTS----RDVMKDDSQMTN 1362
E +GWG D T+ ++++ AW++N A+ + + W+ ++V ++D+
Sbjct: 1567 EWSGWGKKKDVTQEDNSRLGAWDANTAD-------QTKSNEWSGWGKKKEVTQEDNSRLG 1619
Query: 1363 AWDGNV-EQTKTISNDWTAWGKNKSEIQDNVAE------KAEGECGSSE--KW--KTAVI 1411
AWD N +QTK SN+W+ WGK K Q++ + AE + S+E W K V
Sbjct: 1620 AWDANTADQTK--SNEWSGWGKKKEVTQEDNSRFGAWDANAEDQTKSNEWSGWGKKKDVT 1677
Query: 1412 QEGSSKSNAWKSNIEQRSDEDSWTSQKLKADVIQDSSKPSSWGAKPKSND--------SS 1463
QE +S+ AW +N ++ + W+ K +V Q+ + SWG+ + + S
Sbjct: 1678 QEDNSRLGAWDANAADQTKSNEWSDWGKKKEVTQEDNVQDSWGSGKRKDKVTQEDNSGSG 1737
Query: 1464 NWG------------------RNKDEIQDVVSRRAEDDSWSSKK---------------- 1489
WG +NK EI S ++DSW S K
Sbjct: 1738 GWGANRTDLAKSKSSEWSSWGKNKSEIPAGGSENVQNDSWGSGKLEDDTQKENSGSAWVR 1797
Query: 1490 ------QLSSDATQEDSSKFSFWG-----GNKDTTKPKSNDWSSW 1523
S+ QED+ W GN KPKS++ +W
Sbjct: 1798 NKAETIDGGSEKPQEDAWNSGNWKAESKVGNASWGKPKSSESQAW 1842
>K7MDF9_SOYBN (tr|K7MDF9) DNA-directed RNA polymerase OS=Glycine max PE=3 SV=1
Length = 2049
Score = 2262 bits (5861), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1143/1652 (69%), Positives = 1295/1652 (78%), Gaps = 76/1652 (4%)
Query: 1 MEENPTLSFLDGNVVGIQFGMATRQEICTXXXXXXXXXXXXXXXNPFLGLPLEYGRCESC 60
ME+NP S LDG VVGI+FGMATRQEICT NPFLGLPLE+GRCESC
Sbjct: 1 MEDNPPSSVLDGTVVGIKFGMATRQEICTASISDSSISHASQLSNPFLGLPLEFGRCESC 60
Query: 61 GTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKMKKTKFPSSSSGLAQRL 120
GTSE GKCEGHFGYIELP+PIYHPSH+S+LK+MLS+VCLNCLK++KTK P+SSSGLAQRL
Sbjct: 61 GTSEVGKCEGHFGYIELPIPIYHPSHISDLKRMLSMVCLNCLKLRKTKLPASSSGLAQRL 120
Query: 121 LSPCCQEPNAAQVSIREVKTGDGACYLVLKVSKSKMQDGFWRFLDKYGYRYEVDHTRALL 180
+SPCCQE AA VSIREVKT DGACYL LKVSKSKMQ+GFW FL+KYGYRY DHTRALL
Sbjct: 121 ISPCCQEDKAALVSIREVKTSDGACYLALKVSKSKMQNGFWSFLEKYGYRYGGDHTRALL 180
Query: 181 PCEVMEMIKRFPLETKKKLAGKGYFPQDGYVIKYLPVPPNCLXXXXXXXXXXXXXXXXXX 240
PCE ME+IKR P+ETKKKLAGKGYFPQDGYV+KYLPVPPNCL
Sbjct: 181 PCEAMEIIKRIPIETKKKLAGKGYFPQDGYVLKYLPVPPNCLSVPEVSDGVSVMSSDPSI 240
Query: 241 TFLRKLLRKVEVIRSSRSGEPNFESHQVEANDLQSVVDQYLQIRGCAKPARDIETHFGVN 300
T LRKLLRKVE+I+SSRSGEPNFESH VEANDLQSVVDQY QIRG +KPARDIETHFGVN
Sbjct: 241 TILRKLLRKVEIIKSSRSGEPNFESHHVEANDLQSVVDQYFQIRGTSKPARDIETHFGVN 300
Query: 301 KELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVN 360
KEL+ +S KAWL+KM++LFI KGSGFSSR+VITGD YKRINEVGIP E+AQRITFEERVN
Sbjct: 301 KELTASSTKAWLEKMRTLFIRKGSGFSSRNVITGDCYKRINEVGIPVEVAQRITFEERVN 360
Query: 361 SHNMCYLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPP 420
HN+ YLQKLVDE+LCL YKEG STYSLREGSKGH YLKPGQIVHRRIMDGDIVFINRPP
Sbjct: 361 IHNIRYLQKLVDEHLCLTYKEGGSTYSLREGSKGHIYLKPGQIVHRRIMDGDIVFINRPP 420
Query: 421 TTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVE 480
TTHKHSLQAL VYIH+DHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVE
Sbjct: 421 TTHKHSLQALYVYIHEDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVE 480
Query: 481 KQLLSSHXXXXXXXXXXXXXXXXXXXVKKGFMDRAAANQMAMFLSLPLPQPALLKAGSGD 540
QLLSSH VK+ F DRAAANQ+AMF+ LPLP+PALLKA SGD
Sbjct: 481 NQLLSSHSGNLNLQLSTDSLLSLKMLVKRCFFDRAAANQLAMFILLPLPRPALLKASSGD 540
Query: 541 CYWTSTQILQCALPLSFDCTGGRYLIRESDILGFDLGRDVLPAVINEIAASVFFGKGPQE 600
WTS QILQCALPL FDCTGGRYLIR+S+IL F+ RDVLPA +NEIAASVFFGKGP+E
Sbjct: 541 ACWTSIQILQCALPLGFDCTGGRYLIRQSEILEFEFSRDVLPATVNEIAASVFFGKGPKE 600
Query: 601 ALNFFDVLQPFLMECIFSNGFSVGLHDFSISGAVKRITDRNIGKVSPLLYQLRFIYNELV 660
ALNFFDVLQPFLME +F+ GFSV L +FSIS A+KRI ++IGKVS LLYQLR +YNELV
Sbjct: 601 ALNFFDVLQPFLMESLFAEGFSVSLEEFSISRAIKRIIRKSIGKVSSLLYQLRSLYNELV 660
Query: 661 AQQLEKHMQDIELPAIKFASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSK 720
AQQLEKH++D+ELP I FA KS++LGD+IDSKSKSA+DKV QQIGFLGQQLF RGR YSK
Sbjct: 661 AQQLEKHIRDVELPIINFALKSTKLGDLIDSKSKSAIDKVVQQIGFLGQQLFDRGRFYSK 720
Query: 721 GLLEDVASHFKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGL 780
GL++DVASHF KC YDGDGYPSAEYGLLKGCFF+GLDP+EE+VHSISTREIMVRSSRGL
Sbjct: 721 GLVDDVASHFHAKCCYDGDGYPSAEYGLLKGCFFNGLDPYEEMVHSISTREIMVRSSRGL 780
Query: 781 SEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGLKAGDNASYLFPAGEHVGVLA 840
SEPGTLFKNLMAILRDVV+CYDGTVRN+CSNSIIQFEYG++AGD + +LFPAGE VGVLA
Sbjct: 781 SEPGTLFKNLMAILRDVVICYDGTVRNICSNSIIQFEYGIQAGDKSEHLFPAGEPVGVLA 840
Query: 841 ATAMSNPAYKAVLDASPSSNCSWELMKEILLCKVHFRNEPIDRRVILYLNDCDCGRSYCR 900
ATAMSNPAYKAVLDASPSSN SWELMKEILLCKV+FRNE +DRRVILYLNDCDCG SYCR
Sbjct: 841 ATAMSNPAYKAVLDASPSSNSSWELMKEILLCKVNFRNELVDRRVILYLNDCDCGGSYCR 900
Query: 901 ENAAYAVKNQLRKVSLKDTAVDFIVEYQQQRKRK-GSEIDAGLVGHIHLDEVKLEELKIN 959
ENAAY+VK+QLRKVSLKD AV+FI+EYQQQR +K SE D GLVGHI+LDE+ LEELKI+
Sbjct: 901 ENAAYSVKDQLRKVSLKDAAVEFIIEYQQQRTQKENSETDVGLVGHIYLDEMMLEELKIS 960
Query: 960 MAEVFQRCQEKLDSFNRKRKFNQIFKRTELFFSESCVSPNFSAPCLTFIWPAGDGNDLHE 1019
MA VF +C E+L SF++K+K NQ K EL FSESC S + +APCLTF W +DL
Sbjct: 961 MAYVFDKCHERLKSFSQKKKVNQSLKNIELSFSESCSSSHPAAPCLTF-WLKNYDSDLDN 1019
Query: 1020 TTKILADTICPALLDTIIQGDPRINSANIIWVNPDTNTWVRNPSKSSNGELALDIILEKE 1079
K+LA+ ICP L TIIQGDPRI+SA+IIWV+PDTNTWVRNP KSSNGELALDIILEKE
Sbjct: 1020 AVKVLAEKICPVLFKTIIQGDPRISSASIIWVSPDTNTWVRNPYKSSNGELALDIILEKE 1079
Query: 1080 SIKQNGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQIQELLGISCTFDQAIQRLAASVKMV 1139
++KQ+GDAWR+VLD+CLPVLHLIDTRRSIPYAIKQIQELLGISCTFDQAIQR+AASVKMV
Sbjct: 1080 AVKQSGDAWRVVLDACLPVLHLIDTRRSIPYAIKQIQELLGISCTFDQAIQRVAASVKMV 1139
Query: 1140 AKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDATLFTPKRCFERAAE 1199
AKGVLREHLILLASSMTCGGNLVGFN GGYKAL+RQLNIQVPFTDATLFTPK+CFERAAE
Sbjct: 1140 AKGVLREHLILLASSMTCGGNLVGFNIGGYKALSRQLNIQVPFTDATLFTPKKCFERAAE 1199
Query: 1200 KCHTDSLSSIVASCSWGKPVAVGTGSKFDVLWDAKEIKSNDLDGMDVYNFLHMVKSLTNG 1259
KCHTDSLSSIVASCSWGK VAVGTGSKFDV+WDA EIKSN+++GMDVY+FLHMVKS TNG
Sbjct: 1200 KCHTDSLSSIVASCSWGKHVAVGTGSKFDVVWDANEIKSNEIEGMDVYSFLHMVKSFTNG 1259
Query: 1260 EEENNACXXXXXXXXXXXXNADYSLSPQHTSGVDAVFEETFEAMNGPESNGWGSNTDRTE 1319
EEE +AC D +SPQH SG +AVFEE E +NG SNGW ++++ E
Sbjct: 1260 EEETDACLGEDIDDLLEEEYMDLGMSPQHNSGFEAVFEENPEVLNGSTSNGWDVSSNQGE 1319
Query: 1320 TNSTQWSAW-ESNKAETKDGGSQRVHEDSWTSRDVMKDDSQMTNAWDGNV--EQTKTISN 1376
+ + +WS W SNKAE KDG S+ ++SW + V ++DS +N W + +QTKT SN
Sbjct: 1320 SKTNEWSGWASSNKAEIKDGRSEIAPKNSW-GKTVNQEDSSKSNPWSTSTIADQTKTKSN 1378
Query: 1377 DWTAWGKNKSEI-----QDNVAEKAEG--ECGSSEKWKTAVIQEGSSKSNAWKSNI---- 1425
+W+AWG NKSEI N E +G E W V QE SSKSNAW ++
Sbjct: 1379 EWSAWGSNKSEIPVGWASSNKTEIKDGRSETAQENSWGKTVNQEDSSKSNAWNTSTTVDH 1438
Query: 1426 ----------------------EQRSDEDSWTSQKLKADVIQ-DSSKPSSWGA----KPK 1458
+ EDSW S K KADV Q D+S+ +W A + K
Sbjct: 1439 ANTKSNEWSAWGSNQSEIPAGGSKAVQEDSWGSSKWKADVAQEDNSRLGAWDANAADQTK 1498
Query: 1459 SNDSSNWGRNKDEIQDVVSRRAEDDS-------------WSSKKQLSSDATQEDSSKFSF 1505
S++ S WG+ KD Q+ SR D+ W KK D TQED+S+
Sbjct: 1499 SSEWSGWGKKKDVTQEDNSRLGAWDANAADQTKSRDWSGWGKKK----DITQEDNSRLGA 1554
Query: 1506 WGGNKDTTKPKSNDWSSWGGNRDGIQDGGSKRAQDDS-------------WSSQKDVTRE 1552
W N + KS++WS WG +D Q+ S+ D+ W +K+VT+E
Sbjct: 1555 WDANA-ADQTKSSEWSGWGKKKDVTQEDNSRLGAWDANTADQTKSNEWSGWGKKKEVTQE 1613
Query: 1553 SSSKVDAWGANNEASNPKSNDWSAWGKNKDGT 1584
+S++ AW AN A KSN+WS WGK K+ T
Sbjct: 1614 DNSRLGAWDANT-ADQTKSNEWSGWGKKKEVT 1644
Score = 101 bits (252), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 100/313 (31%), Positives = 152/313 (48%), Gaps = 49/313 (15%)
Query: 1307 ESNGWGSNTDRTETNSTQWSAWESNKAETKDGGSQRVHEDSWTSRDVMKDDSQMTNAWDG 1366
E +GWG D T+ ++++ AW++N A D R +D+ ++D+ AWD
Sbjct: 1501 EWSGWGKKKDVTQEDNSRLGAWDANAA---DQTKSRDWSGWGKKKDITQEDNSRLGAWDA 1557
Query: 1367 N-VEQTKTISNDWTAWGKNKSEIQD----------NVAEKAEGECGSSEKWKTAVIQEGS 1415
N +QTK S++W+ WGK K Q+ N A++ + S K V QE +
Sbjct: 1558 NAADQTK--SSEWSGWGKKKDVTQEDNSRLGAWDANTADQTKSNEWSGWGKKKEVTQEDN 1615
Query: 1416 SKSNAWKSNIEQRSDEDSWTSQKLKADVIQ-DSSKPSSWGA----KPKSNDSSNWGRNKD 1470
S+ AW +N ++ + W+ K +V Q D+S+ +W A + KSN+ S+WG+ K
Sbjct: 1616 SRLGAWDANTADQTKSNEWSGWGKKKEVTQEDNSRLGAWDANAADQTKSNEWSDWGKKK- 1674
Query: 1471 EIQDVVSRRAEDDSWSSKKQLSSDATQEDSSKFSFWGGNK-DTTKPKSNDWSSWGGNRDG 1529
+V DSW S K+ TQED+S WG N+ D K KS++WSSWG N+
Sbjct: 1675 ---EVTQEDNVQDSWGSGKR-KDKVTQEDNSGSGGWGANRTDLAKSKSSEWSSWGKNKSE 1730
Query: 1530 IQDGGSKRAQDDSWSSQK---DVTRESSSKV------------------DAWGANNEASN 1568
I GGS+ Q+DSW S K D +E+S DAW + N +
Sbjct: 1731 IPAGGSENVQNDSWGSGKLEDDTQKENSGSAWVRNKAETIDGGSEKPQEDAWNSGNWKAE 1790
Query: 1569 PKSNDWSAWGKNK 1581
K + ++WGK K
Sbjct: 1791 SKVGN-ASWGKPK 1802
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 71/283 (25%), Positives = 114/283 (40%), Gaps = 77/283 (27%)
Query: 1309 NGWGSNTDRTETNSTQWSAWESNKAETKDGGSQRVHEDSWTS----RDVMKDDSQMTNAW 1364
+GWG D T+ ++++ AW++N A+ + W+ +DV ++D+ AW
Sbjct: 1536 SGWGKKKDITQEDNSRLGAWDANAAD-------QTKSSEWSGWGKKKDVTQEDNSRLGAW 1588
Query: 1365 DGNV-EQTKTISNDWTAWGKNKSEIQD----------NVAEKAEGECGSSEKWKTAVIQE 1413
D N +QTK SN+W+ WGK K Q+ N A++ + S K V QE
Sbjct: 1589 DANTADQTK--SNEWSGWGKKKEVTQEDNSRLGAWDANTADQTKSNEWSGWGKKKEVTQE 1646
Query: 1414 GSSKSNAWKSNIEQRSDEDSWTSQKLKADVIQDSSKPSSWGAKPKSND--------SSNW 1465
+S+ AW +N ++ + W+ K +V Q+ + SWG+ + + S W
Sbjct: 1647 DNSRLGAWDANAADQTKSNEWSDWGKKKEVTQEDNVQDSWGSGKRKDKVTQEDNSGSGGW 1706
Query: 1466 G------------------RNKDEIQDVVSRRAEDDSWSSKK------------------ 1489
G +NK EI S ++DSW S K
Sbjct: 1707 GANRTDLAKSKSSEWSSWGKNKSEIPAGGSENVQNDSWGSGKLEDDTQKENSGSAWVRNK 1766
Query: 1490 ----QLSSDATQEDSSKFSFWG-----GNKDTTKPKSNDWSSW 1523
S+ QED+ W GN KPKS++ +W
Sbjct: 1767 AETIDGGSEKPQEDAWNSGNWKAESKVGNASWGKPKSSESQAW 1809
>I1MIR6_SOYBN (tr|I1MIR6) DNA-directed RNA polymerase OS=Glycine max PE=3 SV=2
Length = 2098
Score = 2256 bits (5846), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1140/1668 (68%), Positives = 1292/1668 (77%), Gaps = 92/1668 (5%)
Query: 1 MEENPTLSFLDGNVVGIQFGMATRQEICTXXXXXXXXXXXXXXXNPFLGLPLEYGRCESC 60
ME+NP S LDG VVGI+FGMATRQEICT NPFLGLPLE+GRCESC
Sbjct: 1 MEDNPPSSVLDGTVVGIKFGMATRQEICTASISDSSISHASQLSNPFLGLPLEFGRCESC 60
Query: 61 GTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKMKKTKFPSSSSGLAQRL 120
GTSE GKCEGHFGYIELP+PIYHPSH+S+LK+MLS+VCLNCLK++KTK P+SSSGLAQRL
Sbjct: 61 GTSEVGKCEGHFGYIELPIPIYHPSHISDLKRMLSMVCLNCLKLRKTKLPASSSGLAQRL 120
Query: 121 LSPCCQEPNAAQVSIREVKTGDGACYLVLKVSKSKMQDGFWRFLDKYGYRYEVDHTRALL 180
+SPCCQE AA VSIREVKT DGACYL LKVSKSKMQ+GFW FL+KYGYRY DHTRALL
Sbjct: 121 ISPCCQEDKAALVSIREVKTSDGACYLALKVSKSKMQNGFWSFLEKYGYRYGGDHTRALL 180
Query: 181 PCEVMEMIKRFPLETKKKLAGKGYFPQDGYVIKYLPVPPNCLXXXXXXXXXXXXXXXXXX 240
PCE ME+IKR P+ETKKKLAGKGYFPQDGYV+KYLPVPPNCL
Sbjct: 181 PCEAMEIIKRIPIETKKKLAGKGYFPQDGYVLKYLPVPPNCLSVPEVSDGVSVMSSDPSI 240
Query: 241 TFLRKLLRKVEVIRSSRSGEPNFESHQVEANDLQSVVDQYLQIRGCAKPARDIETHFGVN 300
T LRKLLRKVE+I+SSRSGEPNFESH VEANDLQSVVDQY QIRG +KPARDIETHFGVN
Sbjct: 241 TILRKLLRKVEIIKSSRSGEPNFESHHVEANDLQSVVDQYFQIRGTSKPARDIETHFGVN 300
Query: 301 KELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVN 360
KEL+ +S KAWL+KM++LFI KGSGFSSR+VITGD YKRINEVGIP E+AQRITFEERVN
Sbjct: 301 KELTASSTKAWLEKMRTLFIRKGSGFSSRNVITGDCYKRINEVGIPVEVAQRITFEERVN 360
Query: 361 SHNMCYLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPP 420
HN+ YLQKLVDE+LCL YKEG STYSLREGSKGH YLKPGQIVHRRIMDGDIVFINRPP
Sbjct: 361 IHNIRYLQKLVDEHLCLTYKEGGSTYSLREGSKGHIYLKPGQIVHRRIMDGDIVFINRPP 420
Query: 421 TTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVE 480
TTHKHSLQAL VYIH+DHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVE
Sbjct: 421 TTHKHSLQALYVYIHEDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVE 480
Query: 481 KQLLSSHXXXXXXXXXXXXXXXXXXXVKKGFMDRAAANQMAMFLSLPLPQPALLKAGSGD 540
QLLSSH VK+ F DRAAANQ+AMF+ LPLP+PALLKA SGD
Sbjct: 481 NQLLSSHSGNLNLQLSTDSLLSLKMLVKRCFFDRAAANQLAMFILLPLPRPALLKASSGD 540
Query: 541 CYWTSTQILQCALPLSFDCTGGRYLIRESDILGFDLGRDVLPAVINEIAASVFFGKGPQE 600
WTS QILQCALPL FDCTGGRYLIR+S+IL F+ RDVLPA +NEIAASVFFGKGP+E
Sbjct: 541 ACWTSIQILQCALPLGFDCTGGRYLIRQSEILEFEFSRDVLPATVNEIAASVFFGKGPKE 600
Query: 601 ALNFFDVLQPFLMECIFSNGFSVGLHDFSISGAVKRITDRNIGKVSPLLYQLRFIYNELV 660
ALNFFDVLQPFLME +F+ GFSV L +FSIS A+KRI ++IGKVS LLYQLR +YNELV
Sbjct: 601 ALNFFDVLQPFLMESLFAEGFSVSLEEFSISRAIKRIIRKSIGKVSSLLYQLRSLYNELV 660
Query: 661 AQQLEKHMQDIELPAIKFASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSK 720
AQQLEKH++D+ELP I FA KS++LGD+IDSKSKSA+DKV QQIGFLGQQLF RGR YSK
Sbjct: 661 AQQLEKHIRDVELPIINFALKSTKLGDLIDSKSKSAIDKVVQQIGFLGQQLFDRGRFYSK 720
Query: 721 GLLEDVASHFKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGL 780
GL++DVASHF KC YDGDGYPSAEYGLLKGCFF+GLDP+EE+VHSISTREIMVRSSRGL
Sbjct: 721 GLVDDVASHFHAKCCYDGDGYPSAEYGLLKGCFFNGLDPYEEMVHSISTREIMVRSSRGL 780
Query: 781 SEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGLKAGDNASYLFPAGEHVGVLA 840
SEPGTLFKNLMAILRDVV+CYDGTVRN+CSNSIIQFEYG++AGD + +LFPAGE VGVLA
Sbjct: 781 SEPGTLFKNLMAILRDVVICYDGTVRNICSNSIIQFEYGIQAGDKSEHLFPAGEPVGVLA 840
Query: 841 ATAMSNPAYKAVLDASPSSNCSWELMKEILLCKVHFRNEPIDRRVILYLNDCDCGRSYCR 900
ATAMSNPAYKAVLDASPSSN SWELMKEILLCKV+FRNE +DRRVILYLNDCDCG SYCR
Sbjct: 841 ATAMSNPAYKAVLDASPSSNSSWELMKEILLCKVNFRNELVDRRVILYLNDCDCGGSYCR 900
Query: 901 ENAAYAVKNQLRKVSLKDTAVDFIVEYQQQRKRK-GSEIDAGLVGHIHLDEVKLEELKIN 959
ENAAY+VK+QLRKVSLKD AV+FI+EYQQQR +K SE D GLVGHI+LDE+ LEELKI+
Sbjct: 901 ENAAYSVKDQLRKVSLKDAAVEFIIEYQQQRTQKENSETDVGLVGHIYLDEMMLEELKIS 960
Query: 960 MAEVFQRCQEKLDSFNRKRKFNQIFKRTELFFSESCVSPNF----------------SAP 1003
MA VF +C E+L SF++K+K NQ K EL FS +F +AP
Sbjct: 961 MAYVFDKCHERLKSFSQKKKVNQSLKNIELSFSLFVGLYHFLIMFHLSSESCSSSHPAAP 1020
Query: 1004 CLTFIWPAGDGNDLHETTKILADTICPALLDTIIQGDPRINSANIIWVNPDTNTWVRNPS 1063
CLTF W +DL K+LA+ ICP L TIIQGDPRI+SA+IIWV+PDTNTWVRNP
Sbjct: 1021 CLTF-WLKNYDSDLDNAVKVLAEKICPVLFKTIIQGDPRISSASIIWVSPDTNTWVRNPY 1079
Query: 1064 KSSNGELALDIILEKESIKQNGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQIQELLGISC 1123
KSSNGELALDIILEKE++KQ+GDAWR+VLD+CLPVLHLIDTRRSIPYAIKQIQELLGISC
Sbjct: 1080 KSSNGELALDIILEKEAVKQSGDAWRVVLDACLPVLHLIDTRRSIPYAIKQIQELLGISC 1139
Query: 1124 TFDQAIQRLAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFT 1183
TFDQAIQR+AASVKMVAKGVLREHLILLASSMTCGGNLVGFN GGYKAL+RQLNIQVPFT
Sbjct: 1140 TFDQAIQRVAASVKMVAKGVLREHLILLASSMTCGGNLVGFNIGGYKALSRQLNIQVPFT 1199
Query: 1184 DATLFTPKRCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSKFDVLWDAKEIKSNDLDG 1243
DATLFTPK+CFERAAEKCHTDSLSSIVASCSWGK VAVGTGSKFDV+WDA EIKSN+++G
Sbjct: 1200 DATLFTPKKCFERAAEKCHTDSLSSIVASCSWGKHVAVGTGSKFDVVWDANEIKSNEIEG 1259
Query: 1244 MDVYNFLHMVKSLTNGEEENNACXXXXXXXXXXXXNADYSLSPQHTSGVDAVFEETFEAM 1303
MDVY+FLHMVKS TNGEEE +AC D +SPQH SG +AVFEE E +
Sbjct: 1260 MDVYSFLHMVKSFTNGEEETDACLGEDIDDLLEEEYMDLGMSPQHNSGFEAVFEENPEVL 1319
Query: 1304 NGPESNGWGSNTDRTETNSTQWSAW-ESNKAETKDGGSQRVHEDSWTSRDVMKDDSQMTN 1362
NG SNGW ++++ E+ + +WS W SNKAE KDG S+ ++SW + V ++DS +N
Sbjct: 1320 NGSTSNGWDVSSNQGESKTNEWSGWASSNKAEIKDGRSEIAPKNSW-GKTVNQEDSSKSN 1378
Query: 1363 AWDGNV--EQTKTISNDWTAWGKNKSEI-----QDNVAEKAEG--ECGSSEKWKTAVIQE 1413
W + +QTKT SN+W+AWG NKSEI N E +G E W V QE
Sbjct: 1379 PWSTSTIADQTKTKSNEWSAWGSNKSEIPVGWASSNKTEIKDGRSETAQENSWGKTVNQE 1438
Query: 1414 GSSKSNAWKSNI--------------------------EQRSDEDSWTSQKLKADVIQ-D 1446
SSKSNAW ++ + EDSW S K KADV Q D
Sbjct: 1439 DSSKSNAWNTSTTVDHANTKSNEWSAWGSNQSEIPAGGSKAVQEDSWGSSKWKADVAQED 1498
Query: 1447 SSKPSSWGA----KPKSNDSSNWGRNKDEIQDVVSRRAEDDS-------------WSSKK 1489
+S+ +W A + KS++ S WG+ KD Q+ SR D+ W KK
Sbjct: 1499 NSRLGAWDANAADQTKSSEWSGWGKKKDVTQEDNSRLGAWDANAADQTKSRDWSGWGKKK 1558
Query: 1490 QLSSDATQEDSSKFSFWGGNKDTTKPKSNDWSSWGGNRDGIQDGGSKRAQDDS------- 1542
D TQED+S+ W N + KS++WS WG +D Q+ S+ D+
Sbjct: 1559 ----DITQEDNSRLGAWDANA-ADQTKSSEWSGWGKKKDVTQEDNSRLGAWDANTADQTK 1613
Query: 1543 ------WSSQKDVTRESSSKVDAWGANNEASNPKSNDWSAWGKNKDGT 1584
W +K+VT+E +S++ AW AN A KSN+WS WGK K+ T
Sbjct: 1614 SNEWSGWGKKKEVTQEDNSRLGAWDANT-ADQTKSNEWSGWGKKKEVT 1660
Score = 107 bits (267), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 102/315 (32%), Positives = 154/315 (48%), Gaps = 57/315 (18%)
Query: 1309 NGWGSNTDRTETNSTQWSAWESNKAETKDGGSQRVHEDSWTS----RDVMKDDSQMTNAW 1364
+GWG D T+ ++++ AW++N A+ + W+ +DV ++D+ AW
Sbjct: 1552 SGWGKKKDITQEDNSRLGAWDANAAD-------QTKSSEWSGWGKKKDVTQEDNSRLGAW 1604
Query: 1365 DGNV-EQTKTISNDWTAWGKNKSEIQD----------NVAEKAEGECGSSEKWKTAVIQE 1413
D N +QTK SN+W+ WGK K Q+ N A++ + S K V QE
Sbjct: 1605 DANTADQTK--SNEWSGWGKKKEVTQEDNSRLGAWDANTADQTKSNEWSGWGKKKEVTQE 1662
Query: 1414 GSSKSNAWKSNIEQRSDEDSWTSQKLKADVIQ-DSSKPSSWGA----KPKSNDSSNWGRN 1468
+S+ AW +N E ++ + W+ K DV Q D+S+ +W A + KSN+ S+WG+
Sbjct: 1663 DNSRFGAWDANAEDQTKSNEWSGWGKKKDVTQEDNSRLGAWDANAADQTKSNEWSDWGKK 1722
Query: 1469 KDEIQDVVSRRAEDDSWSSKKQLSSDATQEDSSKFSFWGGNK-DTTKPKSNDWSSWGGNR 1527
K +V DSW S K+ TQED+S WG N+ D K KS++WSSWG N+
Sbjct: 1723 K----EVTQEDNVQDSWGSGKR-KDKVTQEDNSGSGGWGANRTDLAKSKSSEWSSWGKNK 1777
Query: 1528 DGIQDGGSKRAQDDSWSSQK---DVTRESSSKV------------------DAWGANNEA 1566
I GGS+ Q+DSW S K D +E+S DAW + N
Sbjct: 1778 SEIPAGGSENVQNDSWGSGKLEDDTQKENSGSAWVRNKAETIDGGSEKPQEDAWNSGNWK 1837
Query: 1567 SNPKSNDWSAWGKNK 1581
+ K + ++WGK K
Sbjct: 1838 AESKVGN-ASWGKPK 1851
Score = 70.5 bits (171), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 73/285 (25%), Positives = 119/285 (41%), Gaps = 77/285 (27%)
Query: 1307 ESNGWGSNTDRTETNSTQWSAWESNKAETKDGGSQRVHEDSWTS----RDVMKDDSQMTN 1362
E +GWG D T+ ++++ AW++N A+ + + W+ ++V ++D+
Sbjct: 1583 EWSGWGKKKDVTQEDNSRLGAWDANTAD-------QTKSNEWSGWGKKKEVTQEDNSRLG 1635
Query: 1363 AWDGNV-EQTKTISNDWTAWGKNKSEIQDNVAE------KAEGECGSSE--KW--KTAVI 1411
AWD N +QTK SN+W+ WGK K Q++ + AE + S+E W K V
Sbjct: 1636 AWDANTADQTK--SNEWSGWGKKKEVTQEDNSRFGAWDANAEDQTKSNEWSGWGKKKDVT 1693
Query: 1412 QEGSSKSNAWKSNIEQRSDEDSWTSQKLKADVIQDSSKPSSWGAKPKSND--------SS 1463
QE +S+ AW +N ++ + W+ K +V Q+ + SWG+ + + S
Sbjct: 1694 QEDNSRLGAWDANAADQTKSNEWSDWGKKKEVTQEDNVQDSWGSGKRKDKVTQEDNSGSG 1753
Query: 1464 NWG------------------RNKDEIQDVVSRRAEDDSWSSKK---------------- 1489
WG +NK EI S ++DSW S K
Sbjct: 1754 GWGANRTDLAKSKSSEWSSWGKNKSEIPAGGSENVQNDSWGSGKLEDDTQKENSGSAWVR 1813
Query: 1490 ------QLSSDATQEDSSKFSFWG-----GNKDTTKPKSNDWSSW 1523
S+ QED+ W GN KPKS++ +W
Sbjct: 1814 NKAETIDGGSEKPQEDAWNSGNWKAESKVGNASWGKPKSSESQAW 1858
>K7MDF7_SOYBN (tr|K7MDF7) DNA-directed RNA polymerase OS=Glycine max PE=3 SV=1
Length = 2065
Score = 2256 bits (5845), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1140/1668 (68%), Positives = 1292/1668 (77%), Gaps = 92/1668 (5%)
Query: 1 MEENPTLSFLDGNVVGIQFGMATRQEICTXXXXXXXXXXXXXXXNPFLGLPLEYGRCESC 60
ME+NP S LDG VVGI+FGMATRQEICT NPFLGLPLE+GRCESC
Sbjct: 1 MEDNPPSSVLDGTVVGIKFGMATRQEICTASISDSSISHASQLSNPFLGLPLEFGRCESC 60
Query: 61 GTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKMKKTKFPSSSSGLAQRL 120
GTSE GKCEGHFGYIELP+PIYHPSH+S+LK+MLS+VCLNCLK++KTK P+SSSGLAQRL
Sbjct: 61 GTSEVGKCEGHFGYIELPIPIYHPSHISDLKRMLSMVCLNCLKLRKTKLPASSSGLAQRL 120
Query: 121 LSPCCQEPNAAQVSIREVKTGDGACYLVLKVSKSKMQDGFWRFLDKYGYRYEVDHTRALL 180
+SPCCQE AA VSIREVKT DGACYL LKVSKSKMQ+GFW FL+KYGYRY DHTRALL
Sbjct: 121 ISPCCQEDKAALVSIREVKTSDGACYLALKVSKSKMQNGFWSFLEKYGYRYGGDHTRALL 180
Query: 181 PCEVMEMIKRFPLETKKKLAGKGYFPQDGYVIKYLPVPPNCLXXXXXXXXXXXXXXXXXX 240
PCE ME+IKR P+ETKKKLAGKGYFPQDGYV+KYLPVPPNCL
Sbjct: 181 PCEAMEIIKRIPIETKKKLAGKGYFPQDGYVLKYLPVPPNCLSVPEVSDGVSVMSSDPSI 240
Query: 241 TFLRKLLRKVEVIRSSRSGEPNFESHQVEANDLQSVVDQYLQIRGCAKPARDIETHFGVN 300
T LRKLLRKVE+I+SSRSGEPNFESH VEANDLQSVVDQY QIRG +KPARDIETHFGVN
Sbjct: 241 TILRKLLRKVEIIKSSRSGEPNFESHHVEANDLQSVVDQYFQIRGTSKPARDIETHFGVN 300
Query: 301 KELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVN 360
KEL+ +S KAWL+KM++LFI KGSGFSSR+VITGD YKRINEVGIP E+AQRITFEERVN
Sbjct: 301 KELTASSTKAWLEKMRTLFIRKGSGFSSRNVITGDCYKRINEVGIPVEVAQRITFEERVN 360
Query: 361 SHNMCYLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPP 420
HN+ YLQKLVDE+LCL YKEG STYSLREGSKGH YLKPGQIVHRRIMDGDIVFINRPP
Sbjct: 361 IHNIRYLQKLVDEHLCLTYKEGGSTYSLREGSKGHIYLKPGQIVHRRIMDGDIVFINRPP 420
Query: 421 TTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVE 480
TTHKHSLQAL VYIH+DHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVE
Sbjct: 421 TTHKHSLQALYVYIHEDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVE 480
Query: 481 KQLLSSHXXXXXXXXXXXXXXXXXXXVKKGFMDRAAANQMAMFLSLPLPQPALLKAGSGD 540
QLLSSH VK+ F DRAAANQ+AMF+ LPLP+PALLKA SGD
Sbjct: 481 NQLLSSHSGNLNLQLSTDSLLSLKMLVKRCFFDRAAANQLAMFILLPLPRPALLKASSGD 540
Query: 541 CYWTSTQILQCALPLSFDCTGGRYLIRESDILGFDLGRDVLPAVINEIAASVFFGKGPQE 600
WTS QILQCALPL FDCTGGRYLIR+S+IL F+ RDVLPA +NEIAASVFFGKGP+E
Sbjct: 541 ACWTSIQILQCALPLGFDCTGGRYLIRQSEILEFEFSRDVLPATVNEIAASVFFGKGPKE 600
Query: 601 ALNFFDVLQPFLMECIFSNGFSVGLHDFSISGAVKRITDRNIGKVSPLLYQLRFIYNELV 660
ALNFFDVLQPFLME +F+ GFSV L +FSIS A+KRI ++IGKVS LLYQLR +YNELV
Sbjct: 601 ALNFFDVLQPFLMESLFAEGFSVSLEEFSISRAIKRIIRKSIGKVSSLLYQLRSLYNELV 660
Query: 661 AQQLEKHMQDIELPAIKFASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSK 720
AQQLEKH++D+ELP I FA KS++LGD+IDSKSKSA+DKV QQIGFLGQQLF RGR YSK
Sbjct: 661 AQQLEKHIRDVELPIINFALKSTKLGDLIDSKSKSAIDKVVQQIGFLGQQLFDRGRFYSK 720
Query: 721 GLLEDVASHFKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGL 780
GL++DVASHF KC YDGDGYPSAEYGLLKGCFF+GLDP+EE+VHSISTREIMVRSSRGL
Sbjct: 721 GLVDDVASHFHAKCCYDGDGYPSAEYGLLKGCFFNGLDPYEEMVHSISTREIMVRSSRGL 780
Query: 781 SEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGLKAGDNASYLFPAGEHVGVLA 840
SEPGTLFKNLMAILRDVV+CYDGTVRN+CSNSIIQFEYG++AGD + +LFPAGE VGVLA
Sbjct: 781 SEPGTLFKNLMAILRDVVICYDGTVRNICSNSIIQFEYGIQAGDKSEHLFPAGEPVGVLA 840
Query: 841 ATAMSNPAYKAVLDASPSSNCSWELMKEILLCKVHFRNEPIDRRVILYLNDCDCGRSYCR 900
ATAMSNPAYKAVLDASPSSN SWELMKEILLCKV+FRNE +DRRVILYLNDCDCG SYCR
Sbjct: 841 ATAMSNPAYKAVLDASPSSNSSWELMKEILLCKVNFRNELVDRRVILYLNDCDCGGSYCR 900
Query: 901 ENAAYAVKNQLRKVSLKDTAVDFIVEYQQQRKRK-GSEIDAGLVGHIHLDEVKLEELKIN 959
ENAAY+VK+QLRKVSLKD AV+FI+EYQQQR +K SE D GLVGHI+LDE+ LEELKI+
Sbjct: 901 ENAAYSVKDQLRKVSLKDAAVEFIIEYQQQRTQKENSETDVGLVGHIYLDEMMLEELKIS 960
Query: 960 MAEVFQRCQEKLDSFNRKRKFNQIFKRTELFFSESCVSPNF----------------SAP 1003
MA VF +C E+L SF++K+K NQ K EL FS +F +AP
Sbjct: 961 MAYVFDKCHERLKSFSQKKKVNQSLKNIELSFSLFVGLYHFLIMFHLSSESCSSSHPAAP 1020
Query: 1004 CLTFIWPAGDGNDLHETTKILADTICPALLDTIIQGDPRINSANIIWVNPDTNTWVRNPS 1063
CLTF W +DL K+LA+ ICP L TIIQGDPRI+SA+IIWV+PDTNTWVRNP
Sbjct: 1021 CLTF-WLKNYDSDLDNAVKVLAEKICPVLFKTIIQGDPRISSASIIWVSPDTNTWVRNPY 1079
Query: 1064 KSSNGELALDIILEKESIKQNGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQIQELLGISC 1123
KSSNGELALDIILEKE++KQ+GDAWR+VLD+CLPVLHLIDTRRSIPYAIKQIQELLGISC
Sbjct: 1080 KSSNGELALDIILEKEAVKQSGDAWRVVLDACLPVLHLIDTRRSIPYAIKQIQELLGISC 1139
Query: 1124 TFDQAIQRLAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFT 1183
TFDQAIQR+AASVKMVAKGVLREHLILLASSMTCGGNLVGFN GGYKAL+RQLNIQVPFT
Sbjct: 1140 TFDQAIQRVAASVKMVAKGVLREHLILLASSMTCGGNLVGFNIGGYKALSRQLNIQVPFT 1199
Query: 1184 DATLFTPKRCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSKFDVLWDAKEIKSNDLDG 1243
DATLFTPK+CFERAAEKCHTDSLSSIVASCSWGK VAVGTGSKFDV+WDA EIKSN+++G
Sbjct: 1200 DATLFTPKKCFERAAEKCHTDSLSSIVASCSWGKHVAVGTGSKFDVVWDANEIKSNEIEG 1259
Query: 1244 MDVYNFLHMVKSLTNGEEENNACXXXXXXXXXXXXNADYSLSPQHTSGVDAVFEETFEAM 1303
MDVY+FLHMVKS TNGEEE +AC D +SPQH SG +AVFEE E +
Sbjct: 1260 MDVYSFLHMVKSFTNGEEETDACLGEDIDDLLEEEYMDLGMSPQHNSGFEAVFEENPEVL 1319
Query: 1304 NGPESNGWGSNTDRTETNSTQWSAW-ESNKAETKDGGSQRVHEDSWTSRDVMKDDSQMTN 1362
NG SNGW ++++ E+ + +WS W SNKAE KDG S+ ++SW + V ++DS +N
Sbjct: 1320 NGSTSNGWDVSSNQGESKTNEWSGWASSNKAEIKDGRSEIAPKNSW-GKTVNQEDSSKSN 1378
Query: 1363 AWDGNV--EQTKTISNDWTAWGKNKSEI-----QDNVAEKAEG--ECGSSEKWKTAVIQE 1413
W + +QTKT SN+W+AWG NKSEI N E +G E W V QE
Sbjct: 1379 PWSTSTIADQTKTKSNEWSAWGSNKSEIPVGWASSNKTEIKDGRSETAQENSWGKTVNQE 1438
Query: 1414 GSSKSNAWKSNI--------------------------EQRSDEDSWTSQKLKADVIQ-D 1446
SSKSNAW ++ + EDSW S K KADV Q D
Sbjct: 1439 DSSKSNAWNTSTTVDHANTKSNEWSAWGSNQSEIPAGGSKAVQEDSWGSSKWKADVAQED 1498
Query: 1447 SSKPSSWGA----KPKSNDSSNWGRNKDEIQDVVSRRAEDDS-------------WSSKK 1489
+S+ +W A + KS++ S WG+ KD Q+ SR D+ W KK
Sbjct: 1499 NSRLGAWDANAADQTKSSEWSGWGKKKDVTQEDNSRLGAWDANAADQTKSRDWSGWGKKK 1558
Query: 1490 QLSSDATQEDSSKFSFWGGNKDTTKPKSNDWSSWGGNRDGIQDGGSKRAQDDS------- 1542
D TQED+S+ W N + KS++WS WG +D Q+ S+ D+
Sbjct: 1559 ----DITQEDNSRLGAWDANA-ADQTKSSEWSGWGKKKDVTQEDNSRLGAWDANTADQTK 1613
Query: 1543 ------WSSQKDVTRESSSKVDAWGANNEASNPKSNDWSAWGKNKDGT 1584
W +K+VT+E +S++ AW AN A KSN+WS WGK K+ T
Sbjct: 1614 SNEWSGWGKKKEVTQEDNSRLGAWDANT-ADQTKSNEWSGWGKKKEVT 1660
Score = 102 bits (253), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 100/313 (31%), Positives = 152/313 (48%), Gaps = 49/313 (15%)
Query: 1307 ESNGWGSNTDRTETNSTQWSAWESNKAETKDGGSQRVHEDSWTSRDVMKDDSQMTNAWDG 1366
E +GWG D T+ ++++ AW++N A D R +D+ ++D+ AWD
Sbjct: 1517 EWSGWGKKKDVTQEDNSRLGAWDANAA---DQTKSRDWSGWGKKKDITQEDNSRLGAWDA 1573
Query: 1367 N-VEQTKTISNDWTAWGKNKSEIQD----------NVAEKAEGECGSSEKWKTAVIQEGS 1415
N +QTK S++W+ WGK K Q+ N A++ + S K V QE +
Sbjct: 1574 NAADQTK--SSEWSGWGKKKDVTQEDNSRLGAWDANTADQTKSNEWSGWGKKKEVTQEDN 1631
Query: 1416 SKSNAWKSNIEQRSDEDSWTSQKLKADVIQ-DSSKPSSWGA----KPKSNDSSNWGRNKD 1470
S+ AW +N ++ + W+ K +V Q D+S+ +W A + KSN+ S+WG+ K
Sbjct: 1632 SRLGAWDANTADQTKSNEWSGWGKKKEVTQEDNSRLGAWDANAADQTKSNEWSDWGKKK- 1690
Query: 1471 EIQDVVSRRAEDDSWSSKKQLSSDATQEDSSKFSFWGGNK-DTTKPKSNDWSSWGGNRDG 1529
+V DSW S K+ TQED+S WG N+ D K KS++WSSWG N+
Sbjct: 1691 ---EVTQEDNVQDSWGSGKR-KDKVTQEDNSGSGGWGANRTDLAKSKSSEWSSWGKNKSE 1746
Query: 1530 IQDGGSKRAQDDSWSSQK---DVTRESSSKV------------------DAWGANNEASN 1568
I GGS+ Q+DSW S K D +E+S DAW + N +
Sbjct: 1747 IPAGGSENVQNDSWGSGKLEDDTQKENSGSAWVRNKAETIDGGSEKPQEDAWNSGNWKAE 1806
Query: 1569 PKSNDWSAWGKNK 1581
K + ++WGK K
Sbjct: 1807 SKVGN-ASWGKPK 1818
Score = 71.2 bits (173), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 71/283 (25%), Positives = 114/283 (40%), Gaps = 77/283 (27%)
Query: 1309 NGWGSNTDRTETNSTQWSAWESNKAETKDGGSQRVHEDSWTS----RDVMKDDSQMTNAW 1364
+GWG D T+ ++++ AW++N A+ + W+ +DV ++D+ AW
Sbjct: 1552 SGWGKKKDITQEDNSRLGAWDANAAD-------QTKSSEWSGWGKKKDVTQEDNSRLGAW 1604
Query: 1365 DGNV-EQTKTISNDWTAWGKNKSEIQD----------NVAEKAEGECGSSEKWKTAVIQE 1413
D N +QTK SN+W+ WGK K Q+ N A++ + S K V QE
Sbjct: 1605 DANTADQTK--SNEWSGWGKKKEVTQEDNSRLGAWDANTADQTKSNEWSGWGKKKEVTQE 1662
Query: 1414 GSSKSNAWKSNIEQRSDEDSWTSQKLKADVIQDSSKPSSWGAKPKSND--------SSNW 1465
+S+ AW +N ++ + W+ K +V Q+ + SWG+ + + S W
Sbjct: 1663 DNSRLGAWDANAADQTKSNEWSDWGKKKEVTQEDNVQDSWGSGKRKDKVTQEDNSGSGGW 1722
Query: 1466 G------------------RNKDEIQDVVSRRAEDDSWSSKK------------------ 1489
G +NK EI S ++DSW S K
Sbjct: 1723 GANRTDLAKSKSSEWSSWGKNKSEIPAGGSENVQNDSWGSGKLEDDTQKENSGSAWVRNK 1782
Query: 1490 ----QLSSDATQEDSSKFSFWG-----GNKDTTKPKSNDWSSW 1523
S+ QED+ W GN KPKS++ +W
Sbjct: 1783 AETIDGGSEKPQEDAWNSGNWKAESKVGNASWGKPKSSESQAW 1825
>K7M0Q7_SOYBN (tr|K7M0Q7) DNA-directed RNA polymerase OS=Glycine max PE=3 SV=1
Length = 2020
Score = 2256 bits (5845), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1136/1666 (68%), Positives = 1300/1666 (78%), Gaps = 88/1666 (5%)
Query: 1 MEENPTLSFLDGNVVGIQFGMATRQEICTXXXXXXXXXXXXXXXNPFLGLPLEYGRCESC 60
ME+NP S LDG VVGI+FGMATRQEICT NPFLGLPLE+GRCESC
Sbjct: 1 MEDNPPSSVLDGTVVGIKFGMATRQEICTASISESSISHASQLSNPFLGLPLEFGRCESC 60
Query: 61 GTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKMKKTKFPSSSSGLAQRL 120
GTSE GKCEGHFGY+ELPVPIYHPSH+SELK+MLS+VCLNCLKM+KTKFP+SSSGLAQRL
Sbjct: 61 GTSEVGKCEGHFGYVELPVPIYHPSHISELKRMLSVVCLNCLKMRKTKFPASSSGLAQRL 120
Query: 121 LSPCCQEPNAAQVSIREVKTGDGACYLVLKVSKSKMQDGFWRFLDKYGYRYEVDHTRALL 180
+SPCCQ+ NAA VSIREVKT DGACYL LKVSKSK+ DGFW FL+KYGYRYE D TRALL
Sbjct: 121 ISPCCQDVNAALVSIREVKTSDGACYLALKVSKSKIHDGFWSFLEKYGYRYEGDETRALL 180
Query: 181 PCEVMEMIKRFPLETKKKLAGKGYFPQDGYVIKYLPVPPNCLXXXXXXXXXXXXXXXXXX 240
PCE ME+IKR P+ETKKKLAGKG+FPQDGYV+KYLPVPPNCL
Sbjct: 181 PCEAMEIIKRIPIETKKKLAGKGFFPQDGYVLKYLPVPPNCLSVPEVSDGASVMSSDPSM 240
Query: 241 TFLRKLLRKVEVIRSSRSGEPNFESHQVEANDLQSVVDQYLQIRGCAKPARDIETHFGVN 300
T LRKLLRKVE+I+SSRSGEPNFESH VEANDLQSVVDQY QIRG +KPARDIETHFGVN
Sbjct: 241 TILRKLLRKVEIIKSSRSGEPNFESHHVEANDLQSVVDQYFQIRGTSKPARDIETHFGVN 300
Query: 301 KELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVN 360
KEL+ +S KAWL+KM++LFI KGSGFSSR+VITGD YKRINEVGIP E+AQRITFEERVN
Sbjct: 301 KELTASSTKAWLEKMRTLFIRKGSGFSSRNVITGDCYKRINEVGIPVEVAQRITFEERVN 360
Query: 361 SHNMCYLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPP 420
HN+ YLQKLVDE+LCL YKEGVSTYSLREGSKGH YLKPGQIVHRRIMDGDIVFINRPP
Sbjct: 361 IHNIRYLQKLVDEHLCLTYKEGVSTYSLREGSKGHIYLKPGQIVHRRIMDGDIVFINRPP 420
Query: 421 TTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVE 480
TTHKHSLQAL VYIH+DHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELF+VE
Sbjct: 421 TTHKHSLQALYVYIHEDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFAVE 480
Query: 481 KQLLSSHXXXXXXXXXXXXXXXXXXXVKKGFMDRAAANQMAMFLSLPLPQPALLKAGSGD 540
QLLSSH VK+ F+ RAAANQ+AMFL LPLP+PALLKA S D
Sbjct: 481 NQLLSSHSGNLNLQLSTDSLLALKMLVKRCFLGRAAANQLAMFLLLPLPRPALLKASSDD 540
Query: 541 CYWTSTQILQCALPLSFDCTGGRYLIRESDILGFDLGRDVLPAVINEIAASVFFGKGPQE 600
WTS QILQ ALP+ FDCTGGRYLIR+S+IL FD RD LPA INEIAAS+FFGKGP E
Sbjct: 541 ACWTSIQILQGALPMGFDCTGGRYLIRQSEILEFDFSRDALPATINEIAASIFFGKGPME 600
Query: 601 ALNFFDVLQPFLMECIFSNGFSVGLHDFSISGAVKRITDRNIGKVSPLLYQLRFIYNELV 660
AL FFDVLQPFLME +F+ GFSV L +FSIS A+KRI R+IGK S LLYQLR +YNELV
Sbjct: 601 ALKFFDVLQPFLMESLFAEGFSVSLEEFSISRAIKRIIRRSIGKASSLLYQLRSLYNELV 660
Query: 661 AQQLEKHMQDIELPAIKFASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSK 720
AQQLEKH+QD+ELP I FA KS++LGD+IDSKSKS +DKV QQ+GFLGQQLF RGR YSK
Sbjct: 661 AQQLEKHIQDVELPIINFALKSTKLGDLIDSKSKSTIDKVVQQVGFLGQQLFDRGRFYSK 720
Query: 721 GLLEDVASHFKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGL 780
GL++DVASHF KC YDGDGYPSAEYGLLKGCFF+GLDP+EE+VHSISTREIMVRSSRGL
Sbjct: 721 GLVDDVASHFHAKCCYDGDGYPSAEYGLLKGCFFNGLDPYEEMVHSISTREIMVRSSRGL 780
Query: 781 SEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGLKAGDNASYLFPAGEHVGVLA 840
SEPGTLFKNLMAILRDVV+CYDGTVRN+CSNSIIQFEYG++AGD +LFPAGE VGVLA
Sbjct: 781 SEPGTLFKNLMAILRDVVICYDGTVRNICSNSIIQFEYGIQAGDKTEHLFPAGEPVGVLA 840
Query: 841 ATAMSNPAYKAVLDASPSSNCSWELMKEILLCKVHFRNEPIDRRVILYLNDCDCGRSYCR 900
ATAMSNPAYKAVLDASP+SN SWELMKEILLCKV+FRNEP+DRRVILYLNDCDCG S CR
Sbjct: 841 ATAMSNPAYKAVLDASPNSNSSWELMKEILLCKVNFRNEPVDRRVILYLNDCDCGGSCCR 900
Query: 901 ENAAYAVKNQLRKVSLKDTAVDFIVEYQQQRKRK-GSEIDAGLVGHIHLDEVKLEELKIN 959
ENAAY+VKNQLRKVSLK+ AV+FI+EYQQQR +K SE DAGLVGHI+LDE+ LEELKI+
Sbjct: 901 ENAAYSVKNQLRKVSLKNAAVEFIIEYQQQRTQKENSETDAGLVGHIYLDEMMLEELKIS 960
Query: 960 MAEVFQRCQEKLDSFNRKRKFNQIFKRTELFFSESCVSPNFSAPCLTFIWPAGDGNDLHE 1019
MA VF++C E+L SF+RK+K NQ K EL FSESC S + +APCLTF W +DL
Sbjct: 961 MANVFEKCLERLKSFSRKKKVNQYLKNIELSFSESCSSSHPAAPCLTF-WLKNHDSDLDN 1019
Query: 1020 TTKILADTICPALLDTIIQGDPRINSANIIWVNPDTNTWVRNPSKSSNGELALDIILEKE 1079
K+L++ ICP L +TII+GDPRI+SA+IIWV+PDTNTWVRNP KSSNGELALDI+LE+E
Sbjct: 1020 AVKVLSENICPVLFETIIKGDPRISSASIIWVSPDTNTWVRNPYKSSNGELALDIVLEEE 1079
Query: 1080 SIKQNGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQIQELLGISCTFDQAIQRLAASVKMV 1139
++KQ+GDAWRIVLDSCLPVLHLIDTRRSIPYAIKQIQELLGISCTFDQAIQR+AASVKMV
Sbjct: 1080 AVKQSGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQIQELLGISCTFDQAIQRVAASVKMV 1139
Query: 1140 AKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDATLFTPKRCFERAAE 1199
AKGVLREHLILLASSMTCGGNLVGFNTGGYKAL+RQLNIQVPFTDATLFTPK+CFERAAE
Sbjct: 1140 AKGVLREHLILLASSMTCGGNLVGFNTGGYKALSRQLNIQVPFTDATLFTPKKCFERAAE 1199
Query: 1200 KCHTDSLSSIVASCSWGKPVAVGTGSKFDVLWDAKEIKSNDLDGMDVYNFLHMVKSLTNG 1259
KCHTDSLSSIVASCSWGK VAVGTGSKFD++WD+ EIKSN+++GMDVY+FLHMVKS+TNG
Sbjct: 1200 KCHTDSLSSIVASCSWGKHVAVGTGSKFDIVWDSSEIKSNEIEGMDVYSFLHMVKSVTNG 1259
Query: 1260 EEENNACXXXXXXXXXXXXNADYSLSPQHTSGVDAVFEETFEAMNGPESNGWGSNTDRTE 1319
EEE +AC D +SPQH SG +AVFEE E +NG SNGW ++++T+
Sbjct: 1260 EEETDACLGEDIDDLLEEEYMDLGMSPQHNSGFEAVFEENPEVLNGSTSNGWDVSSNQTQ 1319
Query: 1320 TNSTQWSAWESNKAETKDGGSQRVHEDSWTSRDVMKDDSQMTNAWDGNV--EQTKTISND 1377
+ + +WS W S+ KDG S+ E+SW + V ++DS +NAW+ + +QTKT SN+
Sbjct: 1320 SKTNEWSGWASS---NKDGRSETAQENSW-GKTVNQEDSSKSNAWNTSTTADQTKTKSNE 1375
Query: 1378 WTAWGKNKSEIQDNVAEKAEGECGSSEKWKTAV--------------------------- 1410
W+ WG NKSEI ++ + + S W T+
Sbjct: 1376 WSDWGSNKSEIPAGGSKAVQEDSSKSNAWNTSTTSNQTKTKSKEWSAWGSNKSEIPACGS 1435
Query: 1411 --IQEGSSKSNAWKSNI-----EQRSDE-DSWTSQKLK------ADVIQDSSKPSSWG-- 1454
+QE SSKSN W ++ + +S+E +W S K + V +DSSK ++W
Sbjct: 1436 KAVQEDSSKSNTWNTSTTADQTKTKSNEWSAWGSNKSEIPAGGSKAVQEDSSKSNAWNRS 1495
Query: 1455 -----AKPKSNDSSNWGRNKDEIQDVVSRRAEDDSWSSK---KQLSSDATQEDSSKFSFW 1506
K KSN+ S WG NK EI S+ ++DS S ++D T+ S+++S W
Sbjct: 1496 TTADQTKTKSNEWSAWGSNKSEIPAGGSKAVQEDSSKSNAWNTSTTADQTKTKSNEWSAW 1555
Query: 1507 GGNK-------------------------DTTKPKSNDWSSWGGNRDGIQDGGSKRAQDD 1541
G NK D TK KSN+WS+ N+ I GGSK Q+D
Sbjct: 1556 GSNKSEIPAGGSKAVQEDSSKAWNTSTTADQTKTKSNEWSARVSNKSEIPAGGSKAVQED 1615
Query: 1542 SWSSQK---DVTRESSSKVDAWGANNEASNPKSNDWSAWGKNKDGT 1584
SW S K DV +E +S++ AW AN A KSN+WS WGK KD T
Sbjct: 1616 SWGSSKWKADVAQEDNSRLGAWDAN-AADQTKSNEWSGWGKKKDVT 1660
Score = 130 bits (327), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 98/284 (34%), Positives = 141/284 (49%), Gaps = 61/284 (21%)
Query: 1307 ESNGWGSNT--DRTETNSTQWSAWESNKAETKDGGSQRVHEDSWTSRDVMKDDSQMTNAW 1364
+SN W ++T D+T+T S +WSAW SNK+E GGS+ V EDS + AW
Sbjct: 1532 KSNAWNTSTTADQTKTKSNEWSAWGSNKSEIPAGGSKAVQEDS-------------SKAW 1578
Query: 1365 DGNV--EQTKTISNDWTAWGKNKSEIQDNVAEKAEGECGSSEKWKTAVIQEGSSKSNAWK 1422
+ + +QTKT SN+W+A NKSEI ++ + + S KWK V QE +S+ AW
Sbjct: 1579 NTSTTADQTKTKSNEWSARVSNKSEIPAGGSKAVQEDSWGSSKWKADVAQEDNSRLGAWD 1638
Query: 1423 SNIEQRSDEDSWTSQKLKADVIQDSSKPSSWGAKPKSNDSSNWGRNKDEIQDVVSRRAED 1482
+N ++ + W+ K DV Q+ + SWG+ G+ KD++
Sbjct: 1639 ANAADQTKSNEWSGWGKKKDVTQEDNVQHSWGS----------GKRKDKV---------- 1678
Query: 1483 DSWSSKKQLSSDATQEDSSKFSFWGGNK-DTTKPKSNDWSSWGGNRDGIQDGGSKRAQDD 1541
TQED+S WG N+ D KS++WSSWG N+ I GGS Q+D
Sbjct: 1679 -------------TQEDNSGSGDWGANRTDLAITKSSEWSSWGKNKTEIPAGGSANVQND 1725
Query: 1542 SWSSQK-DVTRESSSKVDAWGANNEASNPKSNDWSAWGKNKDGT 1584
SW K + T++ +S AWG N+ SAW +NK T
Sbjct: 1726 SWGLGKLNDTQKDNSGCGAWGENSG---------SAWVRNKAET 1760
>G7LG09_MEDTR (tr|G7LG09) DNA-directed RNA polymerase OS=Medicago truncatula
GN=MTR_8g038990 PE=3 SV=1
Length = 2032
Score = 2192 bits (5679), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1136/1728 (65%), Positives = 1286/1728 (74%), Gaps = 169/1728 (9%)
Query: 1 MEENPTLSFLDGNVVGIQFGMATRQEICTXXXXXXXXXXXXXXXNPFLGLPLEYGRCESC 60
ME+N T S LDG VVGI+F MATR EI T NPFLGLPLE+GRCESC
Sbjct: 53 MEDNATTSLLDGKVVGIRFSMATRHEISTASISDSQISHASQLANPFLGLPLEFGRCESC 112
Query: 61 GTSEAGKCEG------------------------------HFGYIELPVPIYHPSHVSEL 90
GTSEAGKCEG HFGYIELPVPIYHPSHV+EL
Sbjct: 113 GTSEAGKCEGLLFDHFLYCHSDGKMLYFKRIGLNNYYFSGHFGYIELPVPIYHPSHVTEL 172
Query: 91 KKMLSLVCLNCLKMKKTKFPSSSSGLAQRLLSPCCQEPNAAQVSIREVKTGDGACYLVLK 150
KK+LSLVCL+CL++KKTK PSSSSGLAQRLLSPCC++ NAAQVSIREVKT DGACYL LK
Sbjct: 173 KKILSLVCLSCLRLKKTKVPSSSSGLAQRLLSPCCEDVNAAQVSIREVKTADGACYLALK 232
Query: 151 VSKSKMQDGFWRFLDKYGYRYEVDHTRALLPCEVMEMIKRFPLETKKKLAGKGYFPQDGY 210
VSKSKM DGFW FL+KYGYRY DHTRALLPCE ME+IKR P ETKKKLAGKGYFPQDGY
Sbjct: 233 VSKSKMHDGFWTFLEKYGYRYGGDHTRALLPCEAMEIIKRLPQETKKKLAGKGYFPQDGY 292
Query: 211 VIKYLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEVIRSSRSGEPNFESHQVEA 270
++KYLPVPPNCL T LRKLLRKVEVIRSSRSGEPNFESHQVEA
Sbjct: 293 ILKYLPVPPNCLSVPVVSDGVSIMSSDPALTILRKLLRKVEVIRSSRSGEPNFESHQVEA 352
Query: 271 NDLQSVVDQYLQIRGCAKPARDIETHFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRS 330
NDLQSVVDQYLQIRG +K ARDIETH+GVNKEL+D+S KAWL+KM++LFI KGSGFSSR+
Sbjct: 353 NDLQSVVDQYLQIRGTSKAARDIETHYGVNKELNDSSTKAWLEKMRTLFIRKGSGFSSRN 412
Query: 331 VITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLVDENLCLAYKEGVSTYSLRE 390
VITGDGYK+INEVGIP E+AQRITFEERV+ HN+ YLQKLVDENLCL YKEG+STYSLRE
Sbjct: 413 VITGDGYKKINEVGIPLEVAQRITFEERVSIHNIHYLQKLVDENLCLTYKEGMSTYSLRE 472
Query: 391 GSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPL 450
GSKGHTYLKPGQIVHRRIMDGD VFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPL
Sbjct: 473 GSKGHTYLKPGQIVHRRIMDGDTVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPL 532
Query: 451 GADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKKG 510
GADFDGDCVHLFYPQSLAAKAEV+ELFSVEKQLLSSH VK
Sbjct: 533 GADFDGDCVHLFYPQSLAAKAEVLELFSVEKQLLSSHSGNLNLQLSADSLLSLKMLVKSC 592
Query: 511 FMDRAAANQMAMFLSLPLPQPALLKAGSGDCYWTSTQILQCALPLSFDCTGGRYLIRESD 570
F+DR AANQMAMFL LPLP PALLKA +GD YWTS QILQCALP SFDCTGGRYLIR+ +
Sbjct: 593 FLDRVAANQMAMFLLLPLPMPALLKATTGDSYWTSIQILQCALPFSFDCTGGRYLIRQRE 652
Query: 571 ILGFDLGRDVLPAVINEIAASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHDFSI 630
IL FD RD+LP++INEIAAS+FF KGPQEALNFFDV+QPFLME IF++GFSVGL DFSI
Sbjct: 653 ILEFDFTRDILPSIINEIAASIFFSKGPQEALNFFDVIQPFLMENIFAHGFSVGLQDFSI 712
Query: 631 SGAVKRITDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQDIELPAIKFASKSSRLGDMID 690
S AVKR+ +R+IGKVSPLL QLR +Y ELVAQQLEK +QDIELP I FA KS++LGD+ID
Sbjct: 713 SRAVKRVINRSIGKVSPLLRQLRGMYKELVAQQLEKVIQDIELPVINFALKSTKLGDLID 772
Query: 691 SKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLK 750
SKSKSA+DKV QQIGFLGQQLF RG+ YSKGL+EDVASHF+LKC YD D YPSAE+GLLK
Sbjct: 773 SKSKSAVDKVIQQIGFLGQQLFERGKFYSKGLVEDVASHFQLKCFYDKDDYPSAEFGLLK 832
Query: 751 GCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCS 810
GCFFHGLDP+EELVHSI+TREI+ RSSRGLSEPGTLFKNLMAILRDVV+CYDGTVRNVCS
Sbjct: 833 GCFFHGLDPYEELVHSIATREIIDRSSRGLSEPGTLFKNLMAILRDVVICYDGTVRNVCS 892
Query: 811 NSIIQFEYGLKAGDNASYLFPAGEHVGVLAATAMSNPAYKAVLDASPSSNCSWELMKEIL 870
NSIIQFEYG+++GD A +LFPAGE VGVLAAT+MSNPAYKAVLDASPSSN SW MKEIL
Sbjct: 893 NSIIQFEYGIQSGDAAQHLFPAGEPVGVLAATSMSNPAYKAVLDASPSSNSSWGFMKEIL 952
Query: 871 LCKVHFRNEPIDRRVILYLNDCDCGRSYCRENAAYAVKNQLRKVSLKDTAVDFIVEYQQQ 930
LCKV+FRNEP DRRVILYLNDCDCGR+YCRENAAY V+NQLRKVSLKD A+DFIVEYQQQ
Sbjct: 953 LCKVNFRNEPNDRRVILYLNDCDCGRNYCRENAAYLVQNQLRKVSLKDAALDFIVEYQQQ 1012
Query: 931 RKRKGSEIDAGLVGHIHLDEVKLEELKINMAEVFQRCQEKLDSFNRKRKFNQIFKRTELF 990
R+R+ DAGLV HI L EVKLEELKINM EV+Q+CQEKL+SF+RK+K + FKRTEL
Sbjct: 1013 RRRRDGTEDAGLVCHIRLKEVKLEELKINMTEVYQKCQEKLNSFSRKKKLSPFFKRTELI 1072
Query: 991 FSESCVSPNFSAPCLTFIWPAGDGNDLHETTKILADTICPALLDTIIQGDPRINSANIIW 1050
FSE C SAPC+TF+WP DG DL +TTK+LAD ICP LL+TIIQGDPRI+SA+IIW
Sbjct: 1073 FSEFC-----SAPCVTFLWP--DGVDLDQTTKVLADMICPVLLETIIQGDPRISSASIIW 1125
Query: 1051 VNPDTNTWVRNPSKSSNGELALDIILEKESIKQNGDAWRIVLDSCLPVLHLIDTRRSIPY 1110
VNP TNTWVRNPSKSSNGELALD+ILEKE++KQ+GDAWRIVLDSCLPVLHLIDTRRSIPY
Sbjct: 1126 VNPGTNTWVRNPSKSSNGELALDVILEKEAVKQSGDAWRIVLDSCLPVLHLIDTRRSIPY 1185
Query: 1111 AIKQIQELLGISCTFDQAIQRLAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYK 1170
AIKQIQELLGI+CTFDQAIQRLAASV+MVAKGVLREHLILLASSMTCGGNLVGFNTGGYK
Sbjct: 1186 AIKQIQELLGIACTFDQAIQRLAASVRMVAKGVLREHLILLASSMTCGGNLVGFNTGGYK 1245
Query: 1171 ALARQLNIQVPFTDATLF--------------------------TPKRCFERAAEKCHTD 1204
LARQL+IQVPFTDATLF TP++CFERAAEK H+D
Sbjct: 1246 TLARQLDIQVPFTDATLFVSALVISKLQDVFCYYFSYFVNVIMQTPRKCFERAAEKHHSD 1305
Query: 1205 SLSSIVASCSWGKPVAVGTGSKFDVLWDAKEIKSNDLDGMDVYNFLHMVKSLTNGEEENN 1264
SLSSIVASCSWGK VAVGTGSKFD++WD KEIK+N+++GM+VY FL+MVK L NGEEE N
Sbjct: 1306 SLSSIVASCSWGKHVAVGTGSKFDIVWDPKEIKTNEIEGMNVYKFLNMVKGLANGEEETN 1365
Query: 1265 ACXXXXXXXXXXXXNADYSLSPQHTSGVDAVFEETFEAMNGPESNGWGSNTDRTE---TN 1321
AC N D+ +SPQH SG DAVF+ETFE NG SNGW SN D+ + TN
Sbjct: 1366 ACLGEDIDDLFDDENGDFDMSPQHASGFDAVFDETFELPNGSTSNGWDSNKDQIDQPNTN 1425
Query: 1322 STQWSAWESNKAETKDGGSQRVHEDSWTS-------------------RDVMKDDSQMTN 1362
S WS W NK++ + + EDS S + V+++DS +
Sbjct: 1426 SNDWSGWGPNKSDLQ---VDVIQEDSSKSSAWGAATNQKSDQSASAWGKAVVQEDSSKSG 1482
Query: 1363 AW----DGNVEQ----------------------TKTISNDWTAWGKNKSEIQDNVA--- 1393
AW + N EQ + S+ AWG KS +Q++ +
Sbjct: 1483 AWGTATNQNSEQPSWGAATNQKSDQSASAWGKAVVQEDSSKSGAWGNAKSVVQEDSSKSG 1542
Query: 1394 ---------------------EKAEGECGSSEKWKTAVIQEGSSKSNAWKS--------- 1423
E+A+GE G ++KWK V QE S+ S WK+
Sbjct: 1543 APANTNHSSDQSCWGQITGGEERAQGESGGTKKWKADVSQEDSTNSGGWKAWGSSKPEVH 1602
Query: 1424 NIEQRSDEDSWTSQKLKA--DVIQ-DSSKPSSWGA-KPKSNDS-SNWGRNKDEIQDVVSR 1478
E +DSW SQK KA DV Q DS K S+WGA KPKSND+ S+WG+ KDEI +
Sbjct: 1603 EGESTKVQDSWNSQKWKAGEDVSQKDSQKSSAWGATKPKSNDNRSSWGQKKDEIHVMPED 1662
Query: 1479 RAEDDSWSSKKQLSSDA-TQEDSSKFSFWGGNKDTTKPKSNDWSSWGGNRDGIQDGGSKR 1537
+ ++W K + D+ + S WG K P++ W S N G
Sbjct: 1663 SSRSNAWEQKPENVKDSWVAKVPVANSSWGKAK---SPENRPWDS--KNEPNNSFGKPNS 1717
Query: 1538 AQDDSWSSQKDVT----RESSSKVDAWGANNEASNPKSNDWSAWGKNK 1581
+++ W S+ + + S + W + NE++ S+WGK K
Sbjct: 1718 QENEPWDSKNESDSSWGKPKSQESQPWDSKNESN-------SSWGKPK 1758
>M5XM01_PRUPE (tr|M5XM01) Uncharacterized protein OS=Prunus persica
GN=PRUPE_ppa000088mg PE=4 SV=1
Length = 1855
Score = 1746 bits (4521), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 921/1626 (56%), Positives = 1123/1626 (69%), Gaps = 88/1626 (5%)
Query: 1 MEENPTLSFLDGNVVGIQFGMATRQEICTXXXXXXXXXXXXXXXNPFLGLPLEYGRCESC 60
MEE + + L+G + GI+FG+AT QEICT NPFLGLPLE+G+CESC
Sbjct: 1 MEEASSSTILEGEITGIKFGLATHQEICTASISNCAISHASQLSNPFLGLPLEFGKCESC 60
Query: 61 GTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKMKKTKFPSSSSGLAQRL 120
GTSEAGKCEGHFGYIELP+PI+HP+HVSELK+MLSL+CL CLKMKK KFP+ ++GLA+R+
Sbjct: 61 GTSEAGKCEGHFGYIELPIPIFHPNHVSELKRMLSLLCLKCLKMKKNKFPTKNAGLAERM 120
Query: 121 LSPCCQEPNAAQVSIREVKTGDGACYLVLK-VSKSKMQDGFWRFLDKYGYRYEVDHTRAL 179
LS CC++ A+QVSI E+K DG+C L LK SKS+ GFW FL++YG+RY H R L
Sbjct: 121 LSSCCED--ASQVSIGEIKPTDGSCSLQLKRPSKSRTPPGFWNFLERYGFRYGDGHIRTL 178
Query: 180 LPCEVMEMIKRFPLETKKKLAGKGYFPQDGYVIKYLPVPPNCLXXXXXXXXXXXXXXXXX 239
LPCEVMEM+KR P ET+KKLA KGYFPQDGY++ +PVPPNCL
Sbjct: 179 LPCEVMEMLKRIPQETRKKLAAKGYFPQDGYILSQIPVPPNCLSVPEISDGVSVMSADPS 238
Query: 240 XTFLRKLLRKVEVIRSSRSGEPNFESHQVEANDLQSVVDQYLQIRGCAKPARDIETHFGV 299
+ L+K+L++VE+IRSSRSG PNFES VEAN+LQ+++DQYLQ+RG KP+RDI+ FGV
Sbjct: 239 ISMLKKVLKQVEIIRSSRSGIPNFESQIVEANELQAIIDQYLQVRGTGKPSRDIDARFGV 298
Query: 300 NKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERV 359
NKEL+ +S KAWL+KM++LFI KGSGFSSRSVITGD ++R+NEVGIP+EIAQRITFEE+V
Sbjct: 299 NKELNASSTKAWLEKMRTLFIRKGSGFSSRSVITGDAFRRVNEVGIPYEIAQRITFEEKV 358
Query: 360 NSHNMCYLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRP 419
N HN+ YLQ+LVD LCL YK+G STYSLREGSKGHT+L+PGQ+VHRRIMDGD+VF+NRP
Sbjct: 359 NDHNIRYLQELVDSKLCLTYKDGSSTYSLREGSKGHTFLRPGQVVHRRIMDGDLVFVNRP 418
Query: 420 PTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSV 479
PTTHKHSLQAL VY+HDDH VKINPLICGPL ADFDGDC+HLFYPQSLAAKAEV+ELFSV
Sbjct: 419 PTTHKHSLQALQVYVHDDHVVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSV 478
Query: 480 EKQLLSSHXXXXXXXXXXXXXXXXXXXVKKGFMDRAAANQMAMFLSLPLPQPALLKAGSG 539
EKQLLSSH KK F+D+AAA Q+AMF S LP+PALLKA S
Sbjct: 479 EKQLLSSHSGKPNLQLAADALLSLKMMFKKYFLDKAAAQQLAMFASSSLPRPALLKANSA 538
Query: 540 DCYWTSTQILQCALPLSFDCTGGRYLIRESDILGFDLGRDVLPAVINEIAASVFFGKGPQ 599
YWT+ QILQ ALP FDC+G YL+ +S+IL D + AV+N+IA SVFF KG +
Sbjct: 539 HSYWTAFQILQTALPAHFDCSGDNYLVNKSEILNIDFSTSSVAAVMNDIATSVFFEKGGE 598
Query: 600 EALNFFDVLQPFLMECIFSNGFSVGLHDFSISGAVKRITDRNIGKVSPLLYQLRFIYNEL 659
+ L FFD LQP LME +FS GFSVGL DF +S + +NI S LLY LR YNE
Sbjct: 599 DVLKFFDSLQPLLMENLFSEGFSVGLEDFYMSRTSIQDIQKNIQDSSDLLYHLRSTYNEF 658
Query: 660 VAQQLEKHMQDIELPAIKFASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYS 719
V QL+ ++ +++P F +SS LGD+IDSKS SA++K+ QQIGFLG QL +GR YS
Sbjct: 659 VEFQLQNRIRSVKVPVSHFILESSALGDLIDSKSDSAINKIVQQIGFLGLQLSDKGRFYS 718
Query: 720 KGLLEDVAS--HFKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSS 777
K L+EDVAS H K D D YPSAEYGL++ CFFHGLDP+E +VHSI+TRE++VRSS
Sbjct: 719 KTLVEDVASLCHSKYPSDID---YPSAEYGLVQSCFFHGLDPYEAIVHSIATREVIVRSS 775
Query: 778 RGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGLKAGDNASYLFPAGEHVG 837
RGLSEPGTLFKNLMAILRDVV+CYDGTVRNVCSNSIIQFEYG+ G +LFPAGE VG
Sbjct: 776 RGLSEPGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQFEYGVNIGSRPQHLFPAGEPVG 835
Query: 838 VLAATAMSNPAYKAVLDASPSSNCSWELMKEILLCKVHFRNEPIDRRVILYLNDCDCGRS 897
VLAATAMSNPAYKAVLD++PSSN SWELMKEILLCKV+F+NE IDRRVILYLN+C CGR
Sbjct: 836 VLAATAMSNPAYKAVLDSTPSSNSSWELMKEILLCKVNFKNELIDRRVILYLNNCGCGRK 895
Query: 898 YCRENAAYAVKNQLRKVSLKDTAVDFIVEYQQQRKRKGSEI-DAGLVGHIHLDEVKLEEL 956
YCRE AA VKNQL+KVSLKDTAV+F++EY Q GS I DAGLVGHIHL+E L EL
Sbjct: 896 YCRERAACLVKNQLKKVSLKDTAVEFMIEYNNQLSGLGSLINDAGLVGHIHLNEDMLREL 955
Query: 957 KINMAEVFQRCQEKLDSFNR----KRKFN--QIFKRTELFFSE------SCVSPNFSAPC 1004
I + ++ Q+CQE ++SF R K+KFN FK T LF SE SC +PC
Sbjct: 956 NIGVHDILQKCQETINSFRRKKVGKKKFNIGYHFKNTVLFASEHCSFHHSCAEKRSDSPC 1015
Query: 1005 LTFIWPAGDGNDLHETTKILADTICPALLDTIIQGDPRINSANIIWVNPDTNTWVRNPSK 1064
L F A D + T + AD ICP LL+TII+GDPRI SANIIW++PDT TW+R+P+K
Sbjct: 1016 LMFFLQATDDLETTTTLQYYADLICPVLLETIIKGDPRIGSANIIWIDPDTTTWIRSPNK 1075
Query: 1065 SSNGELALDIILEKESIKQNGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQIQELLGISCT 1124
S GE ALDI+LEK IKQ+GDAWR VLDSCLPVLHLIDTRRSIPYAIKQIQELLG+SC
Sbjct: 1076 SQKGEWALDIVLEKSVIKQSGDAWRTVLDSCLPVLHLIDTRRSIPYAIKQIQELLGVSCA 1135
Query: 1125 FDQAIQRLAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTD 1184
FDQA+QRL+ +V MVAKGVL+EHLILLA+SMTC GN VGFN+ GYKAL+R LNIQVPFT+
Sbjct: 1136 FDQAVQRLSTAVTMVAKGVLKEHLILLANSMTCAGNFVGFNSSGYKALSRALNIQVPFTE 1195
Query: 1185 ATLFTPKRCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSKFDVLWDAKEIKSNDLDGM 1244
ATLFTP++CFERAAEKCH DSL+SIVASCSWGK VAVGTG +FDVLWD +E++ G+
Sbjct: 1196 ATLFTPRKCFERAAEKCHMDSLASIVASCSWGKHVAVGTGVRFDVLWDTREVELTQEGGL 1255
Query: 1245 DVYNFLHMVKSLTNGEEENNACXXXXXXXXXXXXNADYSLSPQHTSGVD-AVFEETFEAM 1303
DV+NFLHMV + E A AD S SP+ S D VFE+ E
Sbjct: 1256 DVFNFLHMVSTANVEEATTGALGAEVDDLMLVDEMADSSFSPELNSSFDRPVFEDLVEFD 1315
Query: 1304 NG----PESNGWGSNTD-RTETNSTQ-WSAWESNKAETKDGGSQRVHEDSWTSRDVMKDD 1357
+ PE + W ++ T++N + WS K+ G+ V D W+S K
Sbjct: 1316 DKLGDLPEKSNWEKDSSFHTDSNGGKDWSV-------DKNVGTVAV-PDVWSSWGTEKGK 1367
Query: 1358 SQMTNAWDGNVEQTK-TISNDWTAWGKNKSEIQDNVAEKAEGECGSSEKW-KTAVIQEGS 1415
+Q +N+ + ++ K ++ + +AWGKN + ++N S W V ++ S
Sbjct: 1368 TQDSNSAEAQLDSKKSSVLDTSSAWGKNPA--KENTTSTWGTTTASENDWCGRGVGEDDS 1425
Query: 1416 SKSNAWKSNIEQRSDEDSWTSQKLKADVIQDSSKPSSWGAKP-KSNDSSNWGRNKDEIQD 1474
+ + KS + S +W + + D S+WG P K N +S WG + D
Sbjct: 1426 ATLSGKKSGVLNTS--SAWATNTAREDA------ASAWGTNPAKENSTSTWGTTRANEND 1477
Query: 1475 VVSRR-AEDDSWSSKKQLSS----------DATQEDSSKFSFWGGN---------KDTTK 1514
R +DDS S + SS + +ED++ S WG + TT
Sbjct: 1478 WCGREVGQDDSASLSVKKSSVLDTSSAWATNTAREDAA--SAWGKHPAKENTTSTWGTTT 1535
Query: 1515 PKSNDWSSWGGNRDGIQDGGSKRAQDDSWSSQKDVTRESSSKVDAWGANNEASNPKSNDW 1574
NDW G D S S +K +SS W N + +
Sbjct: 1536 ASENDWCGRGVGHD----------DSASLSGKKSSVLNTSS---VWATN----TAREDAT 1578
Query: 1575 SAWGKN 1580
SAWGKN
Sbjct: 1579 SAWGKN 1584
>K4B027_SOLLC (tr|K4B027) DNA-directed RNA polymerase OS=Solanum lycopersicum
GN=Solyc01g096390.2 PE=3 SV=1
Length = 1678
Score = 1567 bits (4058), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 828/1556 (53%), Positives = 1042/1556 (66%), Gaps = 82/1556 (5%)
Query: 1 MEENPTLSFL-DGNVVGIQFGMATRQEICTXXXXXXXXXXXXXXXNPFLGLPLEYGRCES 59
MEE S + DG V I+FG+AT QEIC NPFLGLPLE GRCES
Sbjct: 45 MEEKSLSSKVSDGIVKRIKFGLATPQEICKSSISDCPITHPSLLLNPFLGLPLEAGRCES 104
Query: 60 CGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKMKKTKFPSSSSGLAQR 119
CGT+E G+CEGHFGYIELP+PIYHP HVSELKKMLSL+CL CLKMK KF ++G+ +R
Sbjct: 105 CGTAEPGQCEGHFGYIELPIPIYHPDHVSELKKMLSLLCLKCLKMKNRKFQVKNAGVLER 164
Query: 120 LLSPCCQEPNAAQVSIREVKTGDGACYLVLKVSKSKMQDGFWRFLDKYGYRYEVDHTRAL 179
+LS CC++ +QVS+ E KT DGA YL LKV K+ + W FL+KYGYRY ++R L
Sbjct: 165 MLSSCCED--VSQVSVYEGKTSDGASYLELKVPKNAAKLQEWNFLEKYGYRYGDGYSRPL 222
Query: 180 LPCEVMEMIKRFPLETKKKLAGKGYFPQDGYVIKYLPVPPNCLXXXXXXXXXXXXXXXXX 239
LP EV+ +++R +T+KKL+ KGYFPQ+GY+++YLPVPPNCL
Sbjct: 223 LPSEVLAILRRIREDTRKKLSAKGYFPQEGYILQYLPVPPNCLSVPDISDGNNIMSSDHS 282
Query: 240 XTFLRKLLRKVEVIRSSRSGEPNFESHQVEANDLQSVVDQYLQIRGCAKPARDIETHFGV 299
T LRK+LR++++I+SSRSG PNFE+H+VEANDLQ+ V QYLQ RG K +RD++ FG+
Sbjct: 283 ITMLRKVLRQIDIIKSSRSGTPNFEAHEVEANDLQAAVVQYLQFRGTGKASRDVDKRFGI 342
Query: 300 NKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERV 359
+KE +D + KAWL+KMK+LFI KGSGFSSRSVITGD YK + E+G+P EIAQ+ITFEERV
Sbjct: 343 HKEAADTTTKAWLEKMKTLFIRKGSGFSSRSVITGDPYKGVGEIGLPCEIAQKITFEERV 402
Query: 360 NSHNMCYLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRP 419
+ HNM YLQKLVDE LCL YK+G STYSLREGSKGHT+L+PGQIVHRRIMDGD VFINRP
Sbjct: 403 SQHNMAYLQKLVDEKLCLTYKDGSSTYSLREGSKGHTFLRPGQIVHRRIMDGDTVFINRP 462
Query: 420 PTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSV 479
PTTHKHSLQAL VY+HDDHTVKINPL+CGPL ADFDGDC+HLFYPQSL+AKAEV+ELF+V
Sbjct: 463 PTTHKHSLQALSVYVHDDHTVKINPLMCGPLSADFDGDCIHLFYPQSLSAKAEVLELFAV 522
Query: 480 EKQLLSSHXXXXXXXXXXXXXXXXXXXVKKGFMDRAAANQMAMFLSLPLPQPALLKAGSG 539
KQLLSSH F D+AAA Q+AMFL + LP A++
Sbjct: 523 GKQLLSSHTGNFNLQLATDSLLSLKLMFSHYFFDKAAAQQLAMFLPMALPDSAVVDVRKS 582
Query: 540 DCYWTSTQILQCALPLSFDCTGGRYLIRESDILGFDLGRDVLPAVINEIAASVFFGKGPQ 599
WT+ QIL ALP FD G + I +S LG D RD++ +++N++ S++F KGP
Sbjct: 583 GAMWTTLQILGAALPDGFDSCGETHTIGKSQFLGIDYHRDLISSILNDVITSIYFMKGPN 642
Query: 600 EALNFFDVLQPFLMECIFSNGFSVGLHDFSISGAVKRITDRNIGKVSPLLYQLRFIYNEL 659
+ L FF+ LQP LME + + GFS+ L DF ++ AV+ I +S LL+ LR YNE
Sbjct: 643 DVLKFFNSLQPLLMENLCTEGFSISLRDFYMTKAVRDGIQERIQCMSKLLHHLRSSYNES 702
Query: 660 VAQQLEKHMQDIELPAIKFASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYS 719
V QLE H+++ +LP I F KSS +G +IDSKS+SA +KV QQIGFLG Q+ RG+ Y+
Sbjct: 703 VEVQLEHHLRNEKLPVIDFVLKSSGMGVLIDSKSESAFNKVVQQIGFLGLQISDRGKFYT 762
Query: 720 KGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRG 779
K L+ D+A F+ K G PS E+GL++ C F+GLDP++ ++HSIS+RE++VRS+RG
Sbjct: 763 KTLVHDMAQLFQKKYPSVGTN-PSEEFGLVRSCLFYGLDPYQGMIHSISSREVIVRSTRG 821
Query: 780 LSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGLKAGDNASYLFPAGEHVGVL 839
L+EPGTLFKNLMAILRDVV+CYDGTVRNV SNSIIQFEYG G N F AG+ VGVL
Sbjct: 822 LTEPGTLFKNLMAILRDVVICYDGTVRNVSSNSIIQFEYGSSGGSNLPSEFCAGDPVGVL 881
Query: 840 AATAMSNPAYKAVLDASPSSNCSWELMKEILLCKVHFRNEPIDRRVILYLNDCDCGRSYC 899
AATAMSNPAYKAVLD+SPSSN SWE+MKEILLC V F+N+ DRRVILYLNDC C R YC
Sbjct: 882 AATAMSNPAYKAVLDSSPSSNSSWEMMKEILLCGVSFKNDVSDRRVILYLNDCGCRRGYC 941
Query: 900 RENAAYAVKNQLRKVSLKDTAVDFIVEYQ-QQRKRKGSEIDAGLVGHIHLDEVKLEELKI 958
RE AAY VKN L KV LKD A +F++EY +Q + SE GL+GHI L++ +LE L I
Sbjct: 942 REKAAYVVKNHLSKVCLKDAADEFLIEYAGRQAGYENSETGTGLIGHIRLNQGQLENLGI 1001
Query: 959 NMAEVFQRCQEKLDSFNRKRKFNQIFKRTELFFSESCV------SPNFSAPCLTFIWPAG 1012
++ EV +RCQE + SF +K+K +FKR L SE C S +APCL F WP
Sbjct: 1002 SVLEVHERCQENISSFQKKKKIGNLFKRIVLSVSEFCSFCHNSGSKCLNAPCLRFSWPDA 1061
Query: 1013 DGNDLHETTKILADTICPALLDTIIQGDPRINSANIIWVNPDTNTWVRNPSKSSNGELAL 1072
+ L + ILAD ICP LLDT+I+GDPR++SANI W++PDT +W+R+PSKS GELAL
Sbjct: 1062 SDDHLERVSHILADMICPILLDTVIKGDPRVSSANIAWISPDTMSWIRSPSKSQRGELAL 1121
Query: 1073 DIILEKESIKQNGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQIQELLGISCTFDQAIQRL 1132
DI+LEKE++KQ GDAWRI++DSCLPV+HLIDT RSIPYAIKQ+QEL+GISC F+QA++RL
Sbjct: 1122 DIVLEKEAVKQRGDAWRILMDSCLPVIHLIDTTRSIPYAIKQVQELIGISCAFEQAVKRL 1181
Query: 1133 AASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDATLFTPKR 1192
+ SV MV KGVL++HL+LLA+SMTC GNLVGFN GG KAL+R LN+Q+PFT+ATLFTP++
Sbjct: 1182 STSVTMVTKGVLKDHLVLLANSMTCAGNLVGFNAGGIKALSRSLNVQIPFTEATLFTPRK 1241
Query: 1193 CFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSKFDVLWDAKEIKSNDLDGMDVYNFLHM 1252
CFERAAEKCH DSLSSIVASCSWGK VAVGTGS+F+VL + + ++ N D DVY+FLH+
Sbjct: 1242 CFERAAEKCHVDSLSSIVASCSWGKHVAVGTGSRFEVLLNTRNVEWNIPDTRDVYSFLHL 1301
Query: 1253 VKSLTNGEEENNACXXXXXXXXXXXXNADYSLSPQHTSGVDAVFEETFEAMNGPESNGWG 1312
V++ + E E +C + LSP SG + TFE
Sbjct: 1302 VRNTSAQEVEGTSCLGAEIDELEEDEDMGLYLSPNRDSGSEM---PTFE----------- 1347
Query: 1313 SNTDRTETNSTQWSAWESNKAETKDGGSQRVHEDSWTSRDVMKDDSQMTNAWDGNVEQTK 1372
DR E + + N E K GS E + + M E+
Sbjct: 1348 ---DRAEFD------YNENLDEGKPSGS--AWEKASSGSVKSGGSWDMAGKTQNGAEEGV 1396
Query: 1373 TISNDWTAWGKNKSEIQDNVAEKAEGECGSSEKWKTAVIQEGSSKSNAWKSNIEQRSDED 1432
S+ W+AWGK E ++N + GE Q GS S W +E+ D
Sbjct: 1397 NQSDSWSAWGKKVDEPENNRQQSGSGE------------QSGSWSS--WGKKVEK--DGG 1440
Query: 1433 SWTSQKLKADVIQDSSKPSSWGAKPKSN--DSSNWGRNKDEIQDVVSRRAEDDSWSSK-- 1488
SW D + + SSWG P S+ NK Q V + WSS
Sbjct: 1441 SW-------DEPKQLNSESSWGKAPNGGGLGSATAEGNKRLDQSV-------NDWSSSVS 1486
Query: 1489 --KQLSSDATQEDSSKFSFWGGNKDTTKPKSNDWSSWGGNRDGIQDGGSKRAQDDS 1542
QL ++ T +DS+K W S++ W + G ++ R+ DDS
Sbjct: 1487 RDGQL-NEPTHDDSTKNGGW---------NSSNVGGWNSQKVGWKNNRPARSADDS 1532
>D7LEE8_ARALL (tr|D7LEE8) DNA-directed RNA polymerase OS=Arabidopsis lyrata subsp.
lyrata GN=ARALYDRAFT_483042 PE=3 SV=1
Length = 1947
Score = 1486 bits (3846), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 798/1603 (49%), Positives = 1064/1603 (66%), Gaps = 93/1603 (5%)
Query: 14 VVGIQFGMATRQEICTXXXXXXXXXXXXXXXNPFLGLPLEYGRCESCGTSEAGKCEGHFG 73
+VGI+F +AT EIC N FLGLPLE+G+CESCG +E KCEGHFG
Sbjct: 14 IVGIKFALATHHEICIASISGSAINHPSQLTNSFLGLPLEFGKCESCGATEPDKCEGHFG 73
Query: 74 YIELPVPIYHPSHVSELKKMLSLVCLNCLKMKKTKFPSSSSGLAQRLLSPCCQEPNAAQV 133
YI+LPVPIYHP+HV+ELK+MLSL+CL CLK+KK K S+S GLA RLL CC+E A+Q+
Sbjct: 74 YIQLPVPIYHPAHVNELKQMLSLLCLKCLKIKKAK--STSGGLADRLLGVCCEE--ASQI 129
Query: 134 SIREVKTGDGACYLVLKV-SKSKMQDGFWRFLDKYGYRYEVDHTRALLPCEVMEMIKRFP 192
SIR+ + DGA YL LK+ S+S++Q G W FL++YGYRY D+TR LL EV E+++R P
Sbjct: 130 SIRD-RASDGASYLELKLPSRSRLQAGCWNFLERYGYRYGSDYTRPLLAREVKEILRRIP 188
Query: 193 LETKKKLAGKGYFPQDGYVIKYLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEV 252
ET+KKL KG+ PQ+GY+++YLPVPPNCL L+ +L+KV
Sbjct: 189 EETRKKLTAKGHIPQEGYILEYLPVPPNCLSVPDVSDGYSSMSVDPSRIELKDVLKKVIA 248
Query: 253 IRSSRSGEPNFESHQVEANDLQSVVDQYLQIRGCAKPARDIETHFGVNKELSDASNKAWL 312
I+SSRSGE NFESH+ EAND+ VVD YLQ+RG AK AR+I+ +GV+K +S+KAW
Sbjct: 249 IKSSRSGETNFESHKAEANDMFRVVDTYLQVRGTAKAARNIDMRYGVSKISDSSSSKAWT 308
Query: 313 DKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLVD 372
KM++LFI KGSGFSSRSVITGD Y+ +NEVGIP EIAQRITFEERV+ HN+ YLQKLVD
Sbjct: 309 QKMRTLFIRKGSGFSSRSVITGDAYRHVNEVGIPIEIAQRITFEERVSVHNIGYLQKLVD 368
Query: 373 ENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALVV 432
+ LCL+Y +G +TYSLR+GSKGHT LKPGQ+VHRR++DGD+VFINRPPTTHKHSLQAL V
Sbjct: 369 DKLCLSYTQGSTTYSLRDGSKGHTVLKPGQVVHRRVIDGDVVFINRPPTTHKHSLQALRV 428
Query: 433 YIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHXXXXX 492
Y+H+D+TVKINPL+C PL ADFDGDCVHLFYPQSL+AKAEV+ELFSVEKQLLSSH
Sbjct: 429 YVHEDNTVKINPLMCSPLSADFDGDCVHLFYPQSLSAKAEVMELFSVEKQLLSSHTGQLI 488
Query: 493 XXXXXXXXXXXXXXVKKGFMDRAAANQMAMFLSLPLPQPALLKAGSGDCYWTSTQILQCA 552
++ F+D+A A Q+AM+ SL LP PAL K+ WT QILQ A
Sbjct: 489 LQMGCDSLLSLRVMLEGVFLDKATAQQLAMYGSLTLPPPALRKSSKSGPAWTVFQILQLA 548
Query: 553 LPLSFDCTGGRYLIRESDILGFDLGRDVLPAVINEIAASVFFGKGPQEALNFFDVLQPFL 612
P C G R+++ SD+L FD G D + ++INEI S+F KGP+E L FFD LQP L
Sbjct: 549 FPERLSCKGDRFMVDGSDLLKFDFGVDAMASIINEIVTSIFLEKGPKETLGFFDSLQPLL 608
Query: 613 MECIFSNGFSVGLHDFSISGA-VKRITDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQDI 671
ME +F+ GFSV L D S+S A + I + I ++SP++ +LR Y + + QLE + +
Sbjct: 609 MESLFAEGFSVSLEDLSMSRADMDVIHNLIIREISPMVSRLRLSYRDEL--QLENSLHKV 666
Query: 672 ELPAIKFASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFK 731
+ A F KS + ++ID KS SA+ K+ QQ GFLG QL + + Y+K L+ED+A K
Sbjct: 667 KEVAANFMLKSYSMRNLIDIKSNSAITKLVQQTGFLGLQLSDKKKFYTKTLVEDMALFCK 726
Query: 732 LKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLM 791
K G S ++G++KGCFFHGLDP+EE+ HSI+ RE++VRSSRGL+EPGTLFKNLM
Sbjct: 727 RKY---GRISSSGDFGIVKGCFFHGLDPYEEMAHSIAAREVIVRSSRGLAEPGTLFKNLM 783
Query: 792 AILRDVVVCYDGTVRNVCSNSIIQFEYGLKAGDNASYLFPAGEHVGVLAATAMSNPAYKA 851
A+LRD+V+ DGTVRN CSNS++QF YG+ + LF AGE VGVLAATAMSNPAYKA
Sbjct: 784 AVLRDIVITNDGTVRNTCSNSVVQFTYGVDSERGHQGLFEAGEPVGVLAATAMSNPAYKA 843
Query: 852 VLDASPSSNCSWELMKEILLCKVHFRNEPIDRRVILYLNDCDCGRSYCRENAAYAVKNQL 911
VLD++ +SN SWE MKE+LLCKV+F+N DRRVILYLN+C CG+ +C+ENAAY V+N+L
Sbjct: 844 VLDSTANSNSSWEQMKEVLLCKVNFQNTTNDRRVILYLNECHCGKRFCQENAAYTVRNKL 903
Query: 912 RKVSLKDTAVDFIVEY-QQQRKRKGSEIDAGLVGHIHLDEVKLEELKINMAEVFQRCQEK 970
+KVSLKDTAV+F+VEY +QQ + ID+ L GHIHLD+ L++ I+M ++ Q+C++
Sbjct: 904 KKVSLKDTAVEFLVEYRKQQTISEIFGIDSCLHGHIHLDKTLLQDWNISMQDILQKCEDV 963
Query: 971 LDSF--NRKRKFNQIFKRTELFFSESCV------SPNFSAPCLTFIWPAGDGNDLHETTK 1022
++S +K+K FKRT L SE C + PCL F + A D DL T
Sbjct: 964 INSLGQKKKKKATDDFKRTSLSVSECCSFQDPCGRKDSDMPCLMFSYSATD-PDLERTLD 1022
Query: 1023 ILADTICPALLDTIIQGDPRINSANIIWVNPDTNTWVRNPSKSSNGELALDIILEKESIK 1082
+L +TI P LL+T+I+GDPRI SANIIW + D TW+RN S GE LD+ +EK ++K
Sbjct: 1023 VLCNTIYPVLLETVIKGDPRICSANIIWNSSDMTTWIRNCHASRRGEWVLDVTVEKSAVK 1082
Query: 1083 QNGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQIQELLGISCTFDQAIQRLAASVKMVAKG 1142
Q+GDAWR+V+D+CL VLHLIDT+RSIPY+IKQ+QELLG+SC F+QA+QRL+ASV+MV+KG
Sbjct: 1083 QSGDAWRVVIDACLSVLHLIDTKRSIPYSIKQVQELLGLSCAFEQAVQRLSASVRMVSKG 1142
Query: 1143 VLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDATLFTPKRCFERAAEKCH 1202
VL+EH+ILLA++MTC GN++GFN+GGYKAL R LNI+ PFT+ATL TP+RCFE+AAEKCH
Sbjct: 1143 VLKEHIILLANNMTCSGNMLGFNSGGYKALTRSLNIKAPFTEATLITPRRCFEKAAEKCH 1202
Query: 1203 TDSLSSIVASCSWGKPVAVGTGSKFDVLWDAKEIKSNDLDGMDVYNFLHMVKSLTNGEEE 1262
TDSLS++V SCSWGK V VGTGS+F++LW+ KE +D + DVY+FL MV+S TN +
Sbjct: 1203 TDSLSTVVGSCSWGKRVDVGTGSQFELLWNQKETGLDDKEETDVYSFLQMVRSTTNAD-- 1260
Query: 1263 NNACXXXXXXXXXXXXNADYSLSPQHTSGV-DAVFEETFEAMN-----GPESNGW--GSN 1314
A A+++ SP+ S + + FE++ E N P + W S+
Sbjct: 1261 --AYVSSPGFDVTEEEMAEWAESPERDSALGEPKFEDSAEFQNLHDEGKPSESNWEKSSS 1318
Query: 1315 TDRTETNSTQW-----SAWESNKAETKDGGSQRVHEDSWTSRDVMKDDSQMTNAWDGNVE 1369
D + ++W + E+N + + ED+W+S + KD
Sbjct: 1319 WDNGCSGGSEWGVSKNTGGEANPESNWEKTTNVEKEDAWSSWNTKKD------------A 1366
Query: 1370 QTKTISNDWTAWG-KNKSEIQDNVAEKAEGECGSSEKWKTAVIQEGS--SKSNAWKSNI- 1425
Q + S+ AWG K K + D ++ W+T Q S ++N S++
Sbjct: 1367 QESSKSDSGVAWGLKTKDDDAD-----------TTPNWETRPAQTDSIVPENNEPTSDVW 1415
Query: 1426 -EQRSDEDSWTSQKLKADVIQDSSKPSSWGAKPKSNDSSNWGRNKDEIQDVVSRRAEDDS 1484
+ + SW + + S P++WG S D++ WG + + + S A +
Sbjct: 1416 GHKSGSDKSWDKKNGGTE-----SAPAAWG----STDAAVWGSSDKKNSETESDAA---A 1463
Query: 1485 WSSKKQLSSDATQEDSSKFSFWGGNKDTTKPKSNDWSSWGGNRDGIQDGGSKRAQDDSWS 1544
W S+ + +S+ + W NK ++K +S D ++WG + D + G + +WS
Sbjct: 1464 WGSRDKKNSEVGS-GAGVLGPW--NKKSSKTES-DGATWGSS-DKTKSGAA------AWS 1512
Query: 1545 SQKDVTRESSSKVDAWGA---NNEASNPKSNDWSAWGKNKDGT 1584
S E+ S+ AWG+ N + + W AW K T
Sbjct: 1513 SWDKKNMETDSEPAAWGSQSKNKPETESGPSTWGAWDTKKSET 1555
>R0FV63_9BRAS (tr|R0FV63) Uncharacterized protein OS=Capsella rubella
GN=CARUB_v10022497mg PE=4 SV=1
Length = 1959
Score = 1477 bits (3824), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 796/1628 (48%), Positives = 1070/1628 (65%), Gaps = 78/1628 (4%)
Query: 1 MEENPTLSFLDGNVVGIQFGMATRQEICTXXXXXXXXXXXXXXXNPFLGLPLEYGRCESC 60
MEE + +G +VGI F +A+ EIC NPFLGLPLE+G+CESC
Sbjct: 1 MEEASSSEVPEGEIVGITFALASHHEICIASISESSINHASQLSNPFLGLPLEFGKCESC 60
Query: 61 GTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKMKKTKFPSSSSGLAQRL 120
G +E KCEGHFGYI+LPVPIYHP+HV ELK+MLSL+CL CLK+KK K S+S GLA+RL
Sbjct: 61 GATEPDKCEGHFGYIQLPVPIYHPAHVIELKQMLSLLCLKCLKIKKAK--STSGGLAERL 118
Query: 121 LSPCCQEPNAAQVSIREVKTGDGACYLVLKV-SKSKMQDGFWRFLDKYGYRYEVDHTRAL 179
L CC+E A+ +SIR+ + DGA YL LK S+S++Q G W FL++YGYRY D+TR L
Sbjct: 119 LGVCCEE--ASHISIRD-RASDGASYLELKFPSRSRLQAGCWNFLERYGYRYGSDYTRPL 175
Query: 180 LPCEVMEMIKRFPLETKKKLAGKGYFPQDGYVIKYLPVPPNCLXXXXXXXXXXXXXXXXX 239
L EV E+++R P ET+KKLA KG+ PQ+GY+++YLPVPPNCL
Sbjct: 176 LAREVKEILRRIPEETRKKLAAKGHIPQEGYILEYLPVPPNCLSVPDISDGLSSMSVDPS 235
Query: 240 XTFLRKLLRKVEVIRSSRSGEPNFESHQVEANDLQSVVDQYLQIRGCAKPARDIETHFGV 299
L+ +L++V I++SRSGE NFESH+ EAND+ VVD YLQ+RG AK AR ++ + V
Sbjct: 236 RIELKDVLKRVVAIKTSRSGETNFESHKAEANDMYRVVDTYLQVRGTAKAARTMDMRYRV 295
Query: 300 NKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERV 359
+K +S+KAW +KM++LFI KGSGFSSRSVITGD Y+ +NEVGIP EIAQRITFE+RV
Sbjct: 296 SKISDSSSSKAWTEKMRTLFIRKGSGFSSRSVITGDAYRHVNEVGIPIEIAQRITFEDRV 355
Query: 360 NSHNMCYLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRP 419
+ HN+ YLQ+LVD+ LCL+Y +G +TYSLR+GSKGHT LKPGQ+VHRR+MDGD+VFINRP
Sbjct: 356 SVHNIRYLQELVDKKLCLSYTQGSTTYSLRDGSKGHTELKPGQVVHRRVMDGDVVFINRP 415
Query: 420 PTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSV 479
PTTHKHSLQAL VY+H+D+TVKINPL+C PL ADFDGDCVHLFYPQSL+AKAEV+ELFSV
Sbjct: 416 PTTHKHSLQALRVYVHEDNTVKINPLMCSPLSADFDGDCVHLFYPQSLSAKAEVMELFSV 475
Query: 480 EKQLLSSHXXXXXXXXXXXXXXXXXXXVKKGFMDRAAANQMAMFLSLPLPQPALLKAGSG 539
+KQLLSSH +++ F+D+A A Q+AM+ SL LP PAL K+
Sbjct: 476 DKQLLSSHTGQLILQMGCDSLLSLRVMLERVFLDKATAQQLAMYGSLSLPPPALRKSSKS 535
Query: 540 DCYWTSTQILQCALPLSFDCTGGRYLIRESDILGFDLGRDVLPAVINEIAASVFFGKGPQ 599
WT QILQ A P C G R+++ SD+L FD G DV+ ++I+EI S+F KGP+
Sbjct: 536 GPAWTVFQILQLAFPERLSCKGDRFMVDGSDLLRFDFGVDVMASIISEIVTSIFLEKGPK 595
Query: 600 EALNFFDVLQPFLMECIFSNGFSVGLHDFSISGA-VKRITDRNIGKVSPLLYQLRFIYNE 658
EAL FFD LQP LME +F+ GFS+ L D S+S A + I + I + SP++ +LR Y +
Sbjct: 596 EALGFFDSLQPLLMESLFAEGFSLSLEDLSMSRADMAVIHNLIIRETSPMVSRLRLSYED 655
Query: 659 LVAQQLEKHMQDIELPAIKFASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLY 718
+ QLE + ++ A F KS + ++ID KS SA++K+ QQ GFLG QL + + Y
Sbjct: 656 EL--QLENSIHKVKEVAANFMLKSYSMRNLIDMKSNSAINKLVQQTGFLGLQLSDKKKFY 713
Query: 719 SKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSR 778
+K L+ED+A K K G S ++G++KGCFFHGLDP+EE+ HSI+ RE++VRSSR
Sbjct: 714 TKTLVEDMALFCKRKY---GRISSSGDFGIVKGCFFHGLDPYEEMAHSIAAREVIVRSSR 770
Query: 779 GLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGLKAGDNASYLFPAGEHVGV 838
GL+EPGTLFKNLMA+LRD+V+ DGTVRN CSNS++QF+YG+ + LF AGE VGV
Sbjct: 771 GLAEPGTLFKNLMAVLRDIVITNDGTVRNTCSNSVVQFKYGVDSERGHQGLFEAGEPVGV 830
Query: 839 LAATAMSNPAYKAVLDASPSSNCSWELMKEILLCKVHFRNEPIDRRVILYLNDCDCGRSY 898
LAATAMSNPAYKAVLD++ +SN SWELMKE+LLCKV+F+N DRRVILYLN+C CG+ +
Sbjct: 831 LAATAMSNPAYKAVLDSTANSNSSWELMKEVLLCKVNFQNNTNDRRVILYLNECRCGKRF 890
Query: 899 CRENAAYAVKNQLRKVSLKDTAVDFIVEY-QQQRKRKGSEIDAGLVGHIHLDEVKLEELK 957
C+ENAA V+N+L KVSLK TAV+F+VEY +QQ + ID+ L GHIHL++ L++
Sbjct: 891 CQENAACTVRNKLNKVSLKATAVEFLVEYRKQQTISEIFGIDSCLHGHIHLNKTLLQDWN 950
Query: 958 INMAEVFQRCQEKLDSF--NRKRKFNQIFKRTEL------FFSESCVSPNFSAPCLTFIW 1009
I+M ++ Q+C++ ++S +K+K FKRT L F + C S + PCL F +
Sbjct: 951 ISMQDIHQKCEDVINSLGQKKKKKATDDFKRTSLSVSDCCSFRDPCGSKDSDMPCLMFSY 1010
Query: 1010 PAGDGNDLHETTKILADTICPALLDTIIQGDPRINSANIIWVNPDTNTWVRNPSKSSNGE 1069
A + DL T +L +TI P LL+T+I+GDPRI SANIIW + D TW+RN S GE
Sbjct: 1011 NATN-PDLERTLDVLCNTIYPVLLETVIKGDPRICSANIIWNSSDMTTWIRNRHASRRGE 1069
Query: 1070 LALDIILEKESIKQNGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQIQELLGISCTFDQAI 1129
LD+ +EK ++KQ+GDAWR+V+DSCL VLHLIDT+RSIPY+IKQ+QELLG+SC F+QA+
Sbjct: 1070 WVLDVTVEKSAVKQSGDAWRVVIDSCLSVLHLIDTKRSIPYSIKQVQELLGLSCAFEQAV 1129
Query: 1130 QRLAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDATLFT 1189
QRL+ASVKMV+KGVL+EH+ILLA++MTC GN++GFN+GGYKAL R LNI+ PFT+ATL T
Sbjct: 1130 QRLSASVKMVSKGVLKEHIILLANNMTCSGNMLGFNSGGYKALTRSLNIKAPFTEATLIT 1189
Query: 1190 PKRCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSKFDVLWDAKEIKSNDLDGMDVYNF 1249
P++CFE+AAEKCHTDSLS++V SCSWGK V VGTGS+F++LW+ KE +D + DVY+F
Sbjct: 1190 PRKCFEKAAEKCHTDSLSTVVGSCSWGKRVDVGTGSQFELLWNQKETGLDDKEETDVYSF 1249
Query: 1250 LHMVKSLTNGEEENNACXXXXXXXXXXXXNADYSLSPQHTSGV-DAVFEETFEAMN---- 1304
L MV+S T+ ++A A+++ SP+ S + + FE++ E N
Sbjct: 1250 LQMVRSTTS----SDAFVSSPGFDVTEEEMAEWAESPERDSALGEPKFEDSAEFQNLHDD 1305
Query: 1305 GPES-NGW--GSNTDRTETNSTQW-----SAWESNKAETKDGGSQRVHEDSWTSRDVMKD 1356
G +S + W S+ D + ++W + ESN + + ED+W+ + KD
Sbjct: 1306 GKQSESNWEKSSSWDNGCSGGSEWGVSKSTGGESNTESNWEKTTSVEKEDAWSGWNTKKD 1365
Query: 1357 DSQMTNAWDGNVEQTKTISNDWTA---WGKNKSEIQDNVAEKAEGECGSSEKWKTAVIQE 1413
+ + + G KT +D W +++ V E E +S+ W + E
Sbjct: 1366 AQESSKSDSGGAWGIKTKDDDANTTPNWETRPAQMDSIVPEINE---PTSDVWGLKSVSE 1422
Query: 1414 GSSKSNAWKSNIEQ----RSDEDSWTSQKLKADVIQDSSKPSSWGAKPKSNDSSNWGRNK 1469
W + +D D+W S K + S ++WG++ K N G
Sbjct: 1423 KPWNKKNWGTESAPAAWGSTDADAWGSSNKKNS--ETESDAAAWGSRDKRNSDIGSGAGV 1480
Query: 1470 DEIQDVVSRRAEDD--SWSSKKQLSSDAT---------QEDSSKFSFWG--GNKDTTKPK 1516
+ S E D +W S + SDA E S+ + WG GN +
Sbjct: 1481 LGPWNKKSSETESDAAAWGSSGKTKSDAATWSPWDKNNMEPDSEPAGWGSQGNMKSETET 1540
Query: 1517 SNDWSSWGGNRDGIQDGGSKRAQDDSWSSQKDVTRESSSKVDAWGANNEA-----SNPKS 1571
++ +SWG + G ++ +W S E++S+ AWG+ + S P S
Sbjct: 1541 ESNGASWGSS-------GKTKSGAAAWGSCDKNNMETNSEPSAWGSQGKKKAETESGPAS 1593
Query: 1572 NDWSAWGK 1579
W AW K
Sbjct: 1594 --WGAWDK 1599
>M4C7I4_BRARP (tr|M4C7I4) DNA-directed RNA polymerase OS=Brassica rapa subsp.
pekinensis GN=Bra000162 PE=3 SV=1
Length = 2059
Score = 1445 bits (3741), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 778/1603 (48%), Positives = 1055/1603 (65%), Gaps = 74/1603 (4%)
Query: 1 MEENPTLSFLDGNVVGIQFGMATRQEICTXXXXXXXXXXXXXXXNPFLGLPLEYGRCESC 60
MEE + L+ +VGI F +AT ++I N FLGLPLE+G+CE+C
Sbjct: 1 MEEASSSDILEAEIVGISFALATHRQIRLASISDAGINHASQLSNAFLGLPLEFGKCEAC 60
Query: 61 GTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKMKKTKFPSSSSGLAQRL 120
G +E KCEGHFGYI LPVPIYHP+HVSELK+MLSL+CL CLK+KK K S+SSGLA+RL
Sbjct: 61 GATEPDKCEGHFGYIHLPVPIYHPAHVSELKQMLSLLCLKCLKIKKIK--STSSGLAERL 118
Query: 121 LSPCCQEPNAAQVSIREVKTGDGACYLVLKV-SKSKMQDGFWRFLDKYGYRYEVDHTRAL 179
L CC+E A+ ++I++ K+ DGA YL LK+ S++++Q+GFW FL++YGYRY DHTR L
Sbjct: 119 LGVCCEE--ASNITIKD-KSSDGASYLQLKLPSRTRLQEGFWNFLERYGYRYGSDHTRPL 175
Query: 180 LPCEVMEMIKRFPLETKKKLAGKGYFPQDGYVIKYLPVPPNCLXXXXXXXXXXXXXXXXX 239
L EV E+++R P ET+KKL KG+ PQ+GY+++YLPVPPNCL
Sbjct: 176 LAREVKEILRRIPEETRKKLTAKGHIPQEGYILEYLPVPPNCLSVPEVSDGSNSMSVDPS 235
Query: 240 XTFLRKLLRKVEVIRSSRSGEPNFESHQVEANDLQSVVDQYLQIRGCAKPARDIETHFGV 299
L+ +LRKV I +SRSGE NFESH+ EAN++ VVD YLQ+RG AKP R+I+ FGV
Sbjct: 236 RIELKDVLRKVVAINNSRSGETNFESHRAEANEMFRVVDTYLQVRGTAKPTRNIDMRFGV 295
Query: 300 NKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERV 359
+K +S+KAW +KM++LFI KGSGFSSRSVITGD ++ +NEVGIP EIA RITFEERV
Sbjct: 296 SKISDSSSSKAWTEKMRTLFIRKGSGFSSRSVITGDAFRNVNEVGIPMEIAHRITFEERV 355
Query: 360 NSHNMCYLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRP 419
+ HN+ YLQ+LVD +CL+Y +G +TYSLR+GSKGHT LKPGQIVHRR+MDGD+VFINRP
Sbjct: 356 SVHNIGYLQELVDNKMCLSYTQGSTTYSLRDGSKGHTVLKPGQIVHRRVMDGDVVFINRP 415
Query: 420 PTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSV 479
PTTHKHSLQAL VY+H+D+TVKINPL+C PL ADFDGDCVHLFYPQSL AKAEV+ELFSV
Sbjct: 416 PTTHKHSLQALRVYVHEDNTVKINPLMCSPLSADFDGDCVHLFYPQSLTAKAEVLELFSV 475
Query: 480 EKQLLSSHXXXXXXXXXXXXXXXXXXXVKKGFMDRAAANQMAMFLSLPLPQPALLKAGSG 539
+KQL SSH +++ F+D+A+A Q+AM+ S LP PA++K+
Sbjct: 476 DKQLRSSHTGQLILQLGLDSLLSLRVMMEQVFLDKASAQQLAMYGSRSLPPPAVVKSSKS 535
Query: 540 DCYWTSTQILQCALPLSFDCTGGRYLIRESDILGFDLGRDVLPAVINEIAASVFFGKGPQ 599
WT QILQ A P C G +++ SD+L FD G D L ++IN I ++ KGP+
Sbjct: 536 GPAWTFFQILQLAFPERLSCRGDGFIVGGSDLLSFDFGVDALASIINGIVTAIMVEKGPK 595
Query: 600 EALNFFDVLQPFLMECIFSNGFSVGLHDFSIS----GAVKRITDRNIGKVSPLLYQLRFI 655
EAL FFD LQP LME + GFS+ L D S+S G + + R I SP++ +LR
Sbjct: 596 EALAFFDSLQPLLMEHLDPQGFSLSLEDLSMSREDMGVIHNLIVREI---SPMVSRLRLS 652
Query: 656 YNELVAQQLEKHMQDIELPAIKFASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRG 715
Y + + QLE +Q ++ A F KS + ++ID KS SA++K+ QQIGFLG QL +
Sbjct: 653 YEDEL--QLENSIQKVKEVAANFMLKSYSMRNLIDIKSNSAINKLVQQIGFLGLQLSDKK 710
Query: 716 RLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVR 775
+LY+K L+ED+A +K K S ++G++KGCFFHGLDP+EE+ HS++ RE++VR
Sbjct: 711 KLYTKTLVEDMAQFYKKKYVSTSS---SGDFGIVKGCFFHGLDPYEEMAHSVAAREVIVR 767
Query: 776 SSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGLKAGDNASYLFPAGEH 835
SSRGL+EPGTLFKNLMA+LRD+V+ DGTVRN CSNSI+QF+Y L + + LF AG+
Sbjct: 768 SSRGLAEPGTLFKNLMAVLRDIVITNDGTVRNTCSNSIVQFKYELSSDNENQGLFEAGDP 827
Query: 836 VGVLAATAMSNPAYKAVLDASPSSNCSWELMKEILLCKVHFRNEPIDRRVILYLNDCDCG 895
VGVLAATAMSNPAYKAVLD+SP+SN SWELMKE+LLCKV+F+N DRRVILYLN+C CG
Sbjct: 828 VGVLAATAMSNPAYKAVLDSSPNSNSSWELMKEVLLCKVNFQNTTNDRRVILYLNECRCG 887
Query: 896 RSYCRENAAYAVKNQLRKVSLKDTAVDFIVEYQQQRKRKGSEI---DAGLVGHIHLDEVK 952
+ YC+EN+AY V+N+L+KVSLKDTAV+F+VEY++Q+ SEI D L GHIHL++
Sbjct: 888 KKYCQENSAYTVRNKLKKVSLKDTAVEFLVEYRKQQAI--SEIFGMDICLHGHIHLNKTL 945
Query: 953 LEELKINMAEVFQRCQEKLDSF-NRKRKFNQIFKRTELFFSESC------VSPNFSAPCL 1005
LE I+M ++ QRC++ ++S +K+K + FK+ L SE C S + PCL
Sbjct: 946 LEGWNISMQDILQRCEDAINSLVQKKKKKAEDFKKMNLSVSECCSFRGPGSSKDSDMPCL 1005
Query: 1006 TFIWPAGDGNDLHETTKILADTICPALLDTIIQGDPRINSANIIWVNPDTNTWVRNPSKS 1065
F DL T +L +TI P LL+T+I+GDPRI SANIIW +P+T TW+R+ S
Sbjct: 1006 MFSSYNATDPDLERTLDVLCNTIYPVLLETVIKGDPRIASANIIWNSPETTTWIRSRHAS 1065
Query: 1066 SNGELALDIILEKESIKQNGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQIQELLGISCTF 1125
GE LD+ +EK +KQ+GDAWR+V+DSCL VLHLIDT+RSIPY+IKQ+QELLG+SC F
Sbjct: 1066 RRGEWVLDVTVEKSDVKQSGDAWRVVIDSCLSVLHLIDTKRSIPYSIKQVQELLGLSCAF 1125
Query: 1126 DQAIQRLAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDA 1185
+QA+QRL+ASV+ V+KGVL+EH+IL+A++MTC G+++GFN+GGYKAL R LNI+ PFT+A
Sbjct: 1126 EQAVQRLSASVRKVSKGVLKEHIILVANNMTCSGDMLGFNSGGYKALTRSLNIKAPFTEA 1185
Query: 1186 TLFTPKRCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSKFDVLWDAKEIKSNDLDGMD 1245
TL P++CFE+AAEKCH DSLS++V SCSWGK V VGTGS+F++LW+ KE + D D
Sbjct: 1186 TLIAPRKCFEKAAEKCHKDSLSTVVGSCSWGKRVDVGTGSQFELLWNKKETGLENDDETD 1245
Query: 1246 VYNFLHMVKSLTNGEEENNACXXXXXXXXXXXXNADYSLSPQHTSGV-DAVFEETFEAMN 1304
V++FL MV+S + A A+++ SP+ S + + F+++ E N
Sbjct: 1246 VFSFLQMVRSTKTAD----AYVSSPGFDVTEEEMAEWAESPERDSALGEPKFDDSAEFQN 1301
Query: 1305 ----GPESNGWGSNTDRTETNSTQWSAWESNKAETKDGGSQRVHEDSW-TSRDVMKDDSQ 1359
G S N E + S W +K+ G + + W + ++ K+D+
Sbjct: 1302 LLDEGKASESKWDNGSLWENGCSSGSEW----GVSKNAGGEENTQSGWGKAANIEKEDA- 1356
Query: 1360 MTNAWDGNVE-QTKTISNDWTAWGKNKSEIQDNVAEKAEGECGSSEKWK-TAVIQEGSSK 1417
++ W+ + Q T ++ W AWG S+ +D+ AE A G+ + VI+ G
Sbjct: 1357 -SSGWNSKKDAQEATNTDSWGAWG---SKTKDD-AENATPNWGTKPAQNDSVVIENGEPS 1411
Query: 1418 SNAWKSNIEQRSDEDSWTSQKLKADVIQDSSKPSSWGAKPKSNDS--SNWGRNKDEIQDV 1475
S+ W + + W + + + P++WG ++S + WG +
Sbjct: 1412 SDVWGP---KAVSDKPWGKKNSETE-----PAPAAWGKTNSESESAAAAWGSTNKKNTGT 1463
Query: 1476 VSRRAEDDSWSSKKQLSSDATQEDSSKFSFWGGNKDTTKPKSNDWSSWGGNRDGIQDGGS 1535
S A W S + + + T+ D+ + NK+ T+P W SWG GG+
Sbjct: 1464 ESDAA---GWGSTNKKNPE-TESDAGAWGSGAKNKE-TEPAPAAWGSWGKKSSEAVSGGA 1518
Query: 1536 KRAQDDSWSSQKDVTRESSSKVDAWGANNEASNPKSNDWSAWG 1578
W ++ E+ S W + N + +S + WG
Sbjct: 1519 ------DWGNRGKRVSETESGAGGWASRNPSLETQSGG-ATWG 1554
>Q5D868_SPIOL (tr|Q5D868) DNA-directed RNA polymerase (Fragment) OS=Spinacia
oleracea GN=NRPD1b PE=2 SV=1
Length = 1902
Score = 1382 bits (3576), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 722/1344 (53%), Positives = 915/1344 (68%), Gaps = 77/1344 (5%)
Query: 213 KYLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEVIRSSRSGEPNFESHQVEAND 272
+Y+PVPPNCL L+K+LR++EVIRSSRSGEPNFESH+VEAND
Sbjct: 1 RYVPVPPNCLSVPDISDGVSVMSSDLCSAMLKKVLRQIEVIRSSRSGEPNFESHEVEAND 60
Query: 273 LQSVVDQYLQIRGCAKPARDIETHFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVI 332
LQ V QYLQ+RG K AR + +GV+KE +++S KAW++KM++LFISKGSGFSSRSVI
Sbjct: 61 LQVAVSQYLQVRGTGKAARAADNRYGVSKEGNNSS-KAWVEKMRTLFISKGSGFSSRSVI 119
Query: 333 TGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLVDENLCLAYKEGVSTYSLREGS 392
TGD Y+ +NEVG+P EIAQ++TFEERVN HN+ YLQ LVD+NLCL +++G+STYSLREGS
Sbjct: 120 TGDAYRAVNEVGVPCEIAQKMTFEERVNVHNIQYLQGLVDKNLCLTFRDGLSTYSLREGS 179
Query: 393 KGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGA 452
KGHT+L+ GQ+VHRRIMDGDIVFINRPPTTHKHSLQAL VYIHDDH VKINPL+CGPL A
Sbjct: 180 KGHTFLRLGQMVHRRIMDGDIVFINRPPTTHKHSLQALRVYIHDDHVVKINPLMCGPLAA 239
Query: 453 DFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKKGFM 512
DFDGDCVHLFYPQSL+A+AEV+ELFSVEKQLLSSH + F+
Sbjct: 240 DFDGDCVHLFYPQSLSARAEVLELFSVEKQLLSSHSGNLNLQLSTDSLLSLKTMFEVYFL 299
Query: 513 DRAAANQMAMFLSLPLPQPALLKAGSGDC----------YWTSTQILQCALPLSFDCTGG 562
DRA+ANQ+AM+ S LP PAL KA S + WT+ Q+LQ ALP F+C G
Sbjct: 300 DRASANQLAMYASSLLPSPALWKACSSNAKKKKAHSSGPRWTAQQVLQTALPSHFECHGD 359
Query: 563 RYLIRESDILGFDLGRDVLPAVINEIAASVFFGKGPQEALNFFDVLQPFLMECIFSNGFS 622
R LI +S+IL D RD++ +VI+++ S+FF K P++AL+FFD LQP LME +FS GFS
Sbjct: 360 RLLIHDSEILKLDFNRDIVASVISDVLTSLFFNKSPKDALDFFDSLQPLLMENLFSEGFS 419
Query: 623 VGLHDFSISGAVKRITDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQDIELPAIKFASKS 682
V LHDF + + RNI +SPLL QLR +NELV Q E H+++ + P F S
Sbjct: 420 VSLHDFFFPKSELQNIQRNIQDLSPLLLQLRSSFNELVQVQFENHIREFKSPVGNFILIS 479
Query: 683 SRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYP 742
S LG MIDS+S SA+DK+ QQIGFLG QL R + YS+GL+EDVAS F K + D YP
Sbjct: 480 SALGSMIDSRSDSAIDKIVQQIGFLGLQLSDRRKFYSRGLVEDVASLFHQKYPF-ADVYP 538
Query: 743 SAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYD 802
S E+G + CFFHGLDP+EE+VHSI+TRE++VRSS+GL+EPGTLFKNLMA+LRDVV+CYD
Sbjct: 539 SEEFGFVSRCFFHGLDPYEEIVHSIATREVIVRSSKGLAEPGTLFKNLMAVLRDVVICYD 598
Query: 803 GTVRNVCSNSIIQFEYGLKAGDNASYLFPAGEHVGVLAATAMSNPAYKAVLDASPSSNCS 862
GTVRN+ SNS+IQFEYG+ G + LFPAG+ VGVLAATAMSNPAYKAVLD+SP+SN S
Sbjct: 599 GTVRNISSNSVIQFEYGV-GGMQSQNLFPAGDPVGVLAATAMSNPAYKAVLDSSPNSNSS 657
Query: 863 WELMKEILLCKVHFRNEPIDRRVILYLNDCDCGRSYCRENAAYAVKNQLRKVSLKDTAVD 922
W++MKEIL C+ +FRN+ DRRVILYLNDC CGR YC+ENA+ VKN L+KVSL+D A++
Sbjct: 658 WDMMKEILFCRANFRNDINDRRVILYLNDCCCGRKYCQENASCLVKNHLKKVSLRDAAIE 717
Query: 923 FIVEYQQQRKRKGS-EIDAGLVGHIHLDEVKLEELKINMAEVFQRCQEKLDSFNRKRKFN 981
+EY++ + S EIDAGLVGHIHL+ L+ I M ++ Q+C+E+++ +K+K+
Sbjct: 718 LAIEYKRPKLEPESCEIDAGLVGHIHLNSGLLKASGIGMHDILQKCEEQVNLLRKKKKYG 777
Query: 982 QIFKRTELFFSESCV-----SPNFSAPCLTFIWPAGDGNDLHETTKILADTICPALLDTI 1036
FKR L S+ C S PCL F W DL T I+AD ICP LLDTI
Sbjct: 778 YHFKRILLSVSDCCFFNHSDSKWTDMPCLKFFWQDMTDTDLERTKHIMADMICPVLLDTI 837
Query: 1037 IQGDPRINSANIIWVNPDTNTWVRNPSKSSNGELALDIILEKESIKQNGDAWRIVLDSCL 1096
I+GDPRI++ NIIW+NP T TWV++P S+ GELA+++ LEKE+++ GDAWRIVLD CL
Sbjct: 838 IKGDPRISTVNIIWINPGTTTWVQSPCSSTKGELAVEVALEKEAVRLTGDAWRIVLDCCL 897
Query: 1097 PVLHLIDTRRSIPYAIKQIQELLGISCTFDQAIQRLAASVKMVAKGVLREHLILLASSMT 1156
PV HLIDTRRSIPYAIKQIQ+L GISC FDQA+QRL+ SV MV KGVL+EHL+LLASSMT
Sbjct: 898 PVFHLIDTRRSIPYAIKQIQDLFGISCAFDQAVQRLSTSVTMVTKGVLKEHLLLLASSMT 957
Query: 1157 CGGNLVGFNTGGYKALARQLNIQVPFTDATLFTPKRCFERAAEKCHTDSLSSIVASCSWG 1216
C GNLVGFNT G KAL R LN+QVPFT+ATL+TP++CFERA+EKCH D+L+SIV SCSWG
Sbjct: 958 CAGNLVGFNTSGIKALCRALNVQVPFTEATLYTPRKCFERASEKCHVDTLASIVGSCSWG 1017
Query: 1217 KPVAVGTGSKFDVLWDAKEIKSNDLDGMDVYNFLHMVKSLTNGEEENNACXXXXXXXXXX 1276
K V++GTG+KFD+LW+ KEI+ D DVYNFLH+V S N EE ++
Sbjct: 1018 KRVSIGTGAKFDLLWETKEIEMAD-KPTDVYNFLHLVSS-ANEEEVDSGGLGEDIESFEK 1075
Query: 1277 XXNADYSLSPQHTSGVDAVFEETFEA-----MNGPESNGW--------GSNTDRTETNST 1323
+ +LSP+ + AVFEET E + G + + W G N ++ +T S
Sbjct: 1076 DVYMEPALSPEQEN--KAVFEETLEIGVDSDITGADESSWDAFPSSGTGWNANKIDTGSG 1133
Query: 1324 Q----WSAWESNKAETKDGGSQRVHEDSWTS----RDVMKDDSQMTNAWDGNVEQTKTIS 1375
WS+W S K + S + W+S + +DS + WD + +
Sbjct: 1134 SAEGGWSSWGSKKDQANPEDSSKT--GGWSSGGSKQKPQPEDSSKSGGWDASKSWGGSNQ 1191
Query: 1376 NDWT-AWGKNKSEIQDNVAEKAEGECGSSE--KWKTAVI------QEGSSKSNAWKSNIE 1426
D + WG+ D E G GS+E W + + QE SS + W ++
Sbjct: 1192 GDPSPVWGQPVKATNDISIENDHG-SGSAEGGGWANSGMKKDLSKQENSSTAGGWDAS-- 1248
Query: 1427 QRSDEDSWTSQKLKADVIQDSSKPSSWGAKPKSNDSSNWGRNKDEIQDVVSRRAED---D 1483
SW+ K K D S S+WGA K++D++ W + D +D+ S ED
Sbjct: 1249 -----KSWSGSKPK-----DPS--SAWGAGKKTDDNNGW-KKSDSKKDLASGSVEDGGCS 1295
Query: 1484 SWSSKKQLSSDATQEDSSKFSFWG 1507
W KK L EDS+ + WG
Sbjct: 1296 GWGPKKDL---LQPEDSAGENGWG 1316
>K3YP74_SETIT (tr|K3YP74) DNA-directed RNA polymerase OS=Setaria italica
GN=Si016066m.g PE=3 SV=1
Length = 2050
Score = 1316 bits (3405), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 714/1622 (44%), Positives = 979/1622 (60%), Gaps = 88/1622 (5%)
Query: 2 EENPTLSFLDGNVVGIQFGMATRQEICTXXXXXXXXXXXXXXXNPFLGLPLEYGRCESCG 61
E+ + F +G + I+ ++T +EICT NPFLGLPLE G+CE+CG
Sbjct: 3 EDQSAILFAEGAIKSIKLSLSTEEEICTYSINDCPVNHPSQLANPFLGLPLEAGKCEACG 62
Query: 62 TSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKMKKTKFPSSSSGLAQRLL 121
SE KCEGHFGYIELPVPIYHP H+SEL+++LSL+C CL++KK K +
Sbjct: 63 ASENDKCEGHFGYIELPVPIYHPCHISELRQLLSLICFKCLRIKKGKVNKQNGKETASAT 122
Query: 122 SPCCQEPNAAQVSIREVKTGDGACYLVLKVSKSK-MQDGFWRFLDKYGYRYEVD-HTRAL 179
C + +S++E KT DGA L L+ K M + W FLDKYG+ Y H+R L
Sbjct: 123 LSCYYCRDIPALSLKETKTTDGAIRLELRAPPRKHMTERSWNFLDKYGFHYGGSAHSRLL 182
Query: 180 LPCEVMEMIKRFPLETKKKLAGKGYFPQDGYVIKYLPVPPNCLXXXXXXXXXXXXXXXXX 239
LP E + ++K+ P +T++KLA +GY Q GYV+KYLPVPPNCL
Sbjct: 183 LPEEALNILKKVPDDTRRKLAARGYTVQSGYVMKYLPVPPNCLYIPEFTDGQSIMSYDIS 242
Query: 240 XTFLRKLLRKVEVIRSSRSGEPNFESHQVEANDLQSVVDQYLQIRGCAKPARDIETHFGV 299
L+K+L+K+E I+ SRSG PNFESH+ E+ D+Q V QY+ +RG + +D F V
Sbjct: 243 IALLKKVLQKIEQIKRSRSGSPNFESHEEESCDIQLAVGQYIHLRGTTRGPQDNSKRFAV 302
Query: 300 NKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERV 359
+ + S K WL+KM++LFISKGSGFSSRSV+TGD Y ++ +G+P E+A+RITFEE+V
Sbjct: 303 GTDTAALSTKQWLEKMRTLFISKGSGFSSRSVLTGDPYIGVDVIGLPSEVAKRITFEEQV 362
Query: 360 NSHNMCYLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRP 419
N+ LQ++VD+ LCL Y++G TY++ GSKGHT LK GQ + RRI+DGD+VF+NRP
Sbjct: 363 TDININRLQEVVDKGLCLTYRDGKDTYAITVGSKGHTTLKVGQTISRRIVDGDVVFLNRP 422
Query: 420 PTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSV 479
P+THKHSLQA Y+HDDHTVKINPL+C P ADFDGDCVH++YPQSLAAKAE +ELFSV
Sbjct: 423 PSTHKHSLQAFYAYVHDDHTVKINPLMCSPFSADFDGDCVHIYYPQSLAAKAEALELFSV 482
Query: 480 EKQLLSSHXXXXXXXXXXXXXXXXXXXVKKGFMDRAAANQMAMFLSLPLPQPALLKAGSG 539
EKQL+SSH + + + ANQ+AMF+ LP PA++K+
Sbjct: 483 EKQLISSHSGQVNLQLGNDSLVAMKAMSSRTMLSKELANQLAMFVPFSLPAPAVIKSIPA 542
Query: 540 DCYWTSTQILQCALPLSFDCTGGRYLIRESDILGFDLGRDVLPAVINEIAASVFFGKGPQ 599
WT TQI+Q ALP C G +L+R+ +I+ DL +D + N++ +SV KGP
Sbjct: 543 ---WTITQIVQGALPAKLTCQGKTHLVRDGNIIKLDLDKDHVQDSFNDLVSSVLSEKGPG 599
Query: 600 EALNFFDVLQPFLMECIFSNGFSVGLHDFSISGAVKRITDRNIGKVSPLLYQLRFIYNEL 659
EAL F +VLQP LME + +GFSV L DF++ A+ +NI K S +L Q RF +++
Sbjct: 600 EALQFLNVLQPLLMEFLLLDGFSVTLKDFNVPKAILEEVHKNIQKQSLILEQSRFSKSQI 659
Query: 660 VAQQLEKHMQDIELPAIKFASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYS 719
++E +++ ++ +F K S LG +ID K ++++ KV QQ+GF+G QL+ G+LYS
Sbjct: 660 AEMRVENNLKGVKQQISEFVIKCSDLGLLIDPKKEASMSKVVQQLGFVGLQLYHEGKLYS 719
Query: 720 KGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRG 779
L+ED S+F K GD +P YGL++ +FHGL+P+EELVHSISTRE +VRSSRG
Sbjct: 720 SRLVEDCFSNFVNKHSDIGDEHPPEAYGLVQSSYFHGLNPYEELVHSISTREAIVRSSRG 779
Query: 780 LSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGLKAGDNASYLFPAGEHVGVL 839
L+EPGTLFKNLMAILRDVV+CYDGTVRN CSNSIIQ +Y + P GE VGVL
Sbjct: 780 LTEPGTLFKNLMAILRDVVICYDGTVRNTCSNSIIQLKYKEDDETDFPSALPPGEPVGVL 839
Query: 840 AATAMSNPAYKAVLDASPSSNCSWELMKEILLCKVHFRNEPIDRRVILYLNDCDCGRSYC 899
AATA+S PAY+AVLD+S S+N SWE MKEIL KV ++N+ DR+VIL+LNDC C + +C
Sbjct: 840 AATAISTPAYRAVLDSSQSNNASWESMKEILQTKVGYKNDMKDRKVILFLNDCSCPKKFC 899
Query: 900 RENAAYAVKNQLRKVSLKDTAVDFIVEYQQQ-------RKRK------GSEIDAGLVGHI 946
+E AA V++ LR+V+L D A D +E ++Q R +K SE LVGHI
Sbjct: 900 KERAALTVQSCLRRVTLADCATDISIEGERQKYVVCIFRHQKQINLDETSEAAPTLVGHI 959
Query: 947 HLDEVKLEELKINMAEVFQRCQEKLDSFNRKRK-----FNQI-FKRTELFFSESCVSPNF 1000
HLD+ +LE + I+ ++ Q+C+E + +K+ F +I F + F+++ +
Sbjct: 960 HLDKAQLERINISTQDILQKCEEISGRYGKKKGHLCHLFKKITFSTCDCSFAQNTIDGYL 1019
Query: 1001 S-APCLTFIWPAGDGNDLHETTK----ILADTICPALLDTIIQGDPRINSANIIWVNPDT 1055
APC+ F + + D L E+ + ++AD++C LLDTII+GDPRI SA IIWV +
Sbjct: 1020 HVAPCVQFSF-SDDNTILSESVERAVNVIADSVCSVLLDTIIKGDPRIQSAKIIWVESEA 1078
Query: 1056 NTWVRNPSKSSNGELALDIILEKESIKQNGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQI 1115
+WV+N + GE L+II+EK+ +NG AWR V+D+C+PVL+LIDTRRSIPY I+Q+
Sbjct: 1079 TSWVKNTQNTLKGEPTLEIIVEKDEAVRNGYAWRTVMDACIPVLNLIDTRRSIPYGIQQV 1138
Query: 1116 QELLGISCTFDQAIQRLAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQ 1175
+ELLGISC FDQ +QRL+ +VKMVAKGVL++HLIL+A+SMTC GNL+GFNT GYKA R
Sbjct: 1139 KELLGISCAFDQVVQRLSTTVKMVAKGVLKDHLILVANSMTCTGNLIGFNTSGYKATFRS 1198
Query: 1176 LNIQVPFTDATLFTPKRCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSKFDVLWDAKE 1235
L +QVPFT++TLFTP +CFE+AAEKC +DSL +V+SCSWGK A+GTGS F +LW+ +
Sbjct: 1199 LKVQVPFTESTLFTPMKCFEKAAEKCDSDSLGCVVSSCSWGKHAAIGTGSSFQILWNENQ 1258
Query: 1236 IKSNDLDGMDVYNFLHMVKSLTNGEEENNACXXXXXXXXXXXXNADYSLSPQH--TSGVD 1293
+KSN G +Y+FL +V+ T+ E+ A D LSP+ T G
Sbjct: 1259 LKSNKEYGDGLYDFLALVR--TDQEKAGYAFLDDVDYLVEENAVDDVCLSPEPDGTHG-K 1315
Query: 1294 AVFEETFEAMNGPESNGWGSNTDRTETNSTQWSAWESNKAETKDGGSQRVHEDSWT--SR 1351
FE+ E + W E ++T S+WE N + D G W+ +
Sbjct: 1316 PTFEDNVEEQGIQNGSSW-------ENDTTMNSSWEQNASAGNDSGDW----GGWSNGAA 1364
Query: 1352 DVMKDDSQMTNAWDGNVEQTKTISNDWTAWGKNKSEIQDNVAEKAEGECGSSEKWK-TAV 1410
K Q + WD + T+ N+ T WG +E Q N GE W
Sbjct: 1365 AATKPLDQDNSCWDAHA----TVENNSTDWGGWGTEKQTN------GEQAEINTWADKGA 1414
Query: 1411 IQEGSSKSNAW--KSNIEQRS----DEDSWTSQKLKADVIQDSSKPSSWGAKPKSNDSSN 1464
E S+ + W KS+ ++S D D+W + A S+ ++WG +
Sbjct: 1415 GMESSAGDDNWEMKSSAPEKSKKNLDHDTWGNMPAPASA---SASENTWGEQKGDGGDGA 1471
Query: 1465 W----GRNKDEIQDVVSRRAEDDSWSSKKQLSSDATQEDSSKFSFWGGNKDTTKPKSN-- 1518
W G K++ DV + DSW KK + + D K GN + N
Sbjct: 1472 WEKQTGSCKEQGMDV-----DQDSW-GKKTMPPSSNMWDKKKSDGVHGNWEEQPSSWNEQ 1525
Query: 1519 ----DWSSWGGNRDGIQDGGSKRAQDDSWSSQKDVTRESSSKVDAWGANNEASNPKSNDW 1574
D SWG R + + A D W Q + + DA +N A P +N W
Sbjct: 1526 MLNVDQDSWGDAR----EKNNSHAGDSRWPEQASTYKRKRTNADAGSWDNMAMAPSNNAW 1581
Query: 1575 SA 1576
A
Sbjct: 1582 DA 1583
>I1IV91_BRADI (tr|I1IV91) DNA-directed RNA polymerase OS=Brachypodium distachyon
GN=BRADI4G45065 PE=3 SV=1
Length = 1954
Score = 1312 bits (3396), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 721/1665 (43%), Positives = 1005/1665 (60%), Gaps = 130/1665 (7%)
Query: 1 MEENPTLSFL-DGNVVGIQFGMATRQEICTXXXXXXXXXXXXXXXNPFLGLPLEYGRCES 59
MEE+ + + +G + I+ ++T EI T NPFLGLPLE G+CES
Sbjct: 1 MEEDQSAVLVAEGAIKSIKLSLSTEDEILTYSINDCPVTHPSQLGNPFLGLPLETGKCES 60
Query: 60 CGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKMKKTKFPSSSSGLAQR 119
CG SE GKCEGHFGYIELPVPIYHP HVSEL+++LSLVCL CL++KK K S+G
Sbjct: 61 CGASENGKCEGHFGYIELPVPIYHPCHVSELRQLLSLVCLKCLRIKKGK-AKQSNGKENV 119
Query: 120 LLSPCCQEPNAAQVSIREVKTGDGACYLVLKVSKSK-MQDGFWRFLDKYGYRYE-VDHTR 177
++ C + +S++EVKT DGA L L+ + M+D W FLDKYG+ + H R
Sbjct: 120 SVTACSYCRDVPALSLKEVKTADGAFRLELRAPPRRLMKDSSWNFLDKYGFHHGGASHFR 179
Query: 178 ALLPCEVMEMIKRFPLETKKKLAGKGYFPQDGYVIKYLPVPPNCLXXXXXXXXXXXXXXX 237
LLP E + ++K+ P +T+KKLA +GY Q GYV+KYLPVPPNCL
Sbjct: 180 TLLPEEALNILKKIPDDTRKKLAARGYIAQSGYVMKYLPVPPNCLYIPEFTDGQSIMSYD 239
Query: 238 XXXTFLRKLLRKVEVIRSSRSGEPNFESHQVEANDLQSVVDQYLQIRGCAKPARDIETHF 297
+ L+K+L ++E I+ SR+G PNFESH+ E++DLQ + QY+ +RG K +D + F
Sbjct: 240 ISISLLKKILHRIEQIKKSRAGTPNFESHEAESSDLQISIAQYIHLRGTTKGPQDTK-RF 298
Query: 298 GVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEE 357
++ + S S K WL+KM++LFISKGSGFSSRSV+TGD Y ++ VG+P E+A+RITFEE
Sbjct: 299 TISTDSSHLSTKQWLEKMRTLFISKGSGFSSRSVLTGDPYIGVDVVGLPSEVAKRITFEE 358
Query: 358 RVNSHNMCYLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFIN 417
+V N+ LQ++VD+ LCL Y++G +TY++ GSKG+T LK GQ + RRI+DGD+VF+N
Sbjct: 359 QVTDINIKRLQEVVDKGLCLTYRDGQTTYAITVGSKGYTTLKVGQTISRRIVDGDVVFLN 418
Query: 418 RPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELF 477
RPP+THKHSLQA VYIHDDHTVKINPLIC PL ADFDGDCVH++YPQSLAAKAE +ELF
Sbjct: 419 RPPSTHKHSLQAFYVYIHDDHTVKINPLICSPLAADFDGDCVHIYYPQSLAAKAEALELF 478
Query: 478 SVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKKGFMDRAAANQMAMFLSLPLPQPALLKAG 537
SVEKQL +SH + + + +ANQ+AM LS LP PA++K
Sbjct: 479 SVEKQLTNSHNGKVNLQLSNDSLLALKHMSSRTVLSKESANQLAMLLSFSLPDPAVVKLK 538
Query: 538 SGDCYWTSTQILQCALPLSFDCTGGRYLIRESDILGFDLGRDVLPAVINEIAASVFFGKG 597
C WT TQI+Q ALP + C GGR+L+++S ++ DL ++ + A +++ +S+ KG
Sbjct: 539 P--C-WTITQIIQGALPAALTCEGGRFLVKDSTVIKLDLAKESVQASFSDLVSSILCVKG 595
Query: 598 PQEALNFFDVLQPFLMECIFSNGFSVGLHDFSISGAVKRITDRNIGKVSPLLYQLRFIYN 657
P AL F + LQP LME + +GFSV L DF++ + ++I + S +L Q R +
Sbjct: 596 PGGALQFLNALQPLLMEYLLLDGFSVSLQDFNVPKVLLEEVHKSIQEQSLVLEQSRCSKS 655
Query: 658 ELVAQQLEKHMQDIELPAIKFASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRL 717
+ V +++ +++D++ F +SS LG +ID KS+ ++ KV QQ+GF+G QL+ G+
Sbjct: 656 QFVEMRVDNNLKDVKQQISDFVVESSHLGLLIDPKSEPSMSKVVQQLGFVGLQLYREGKF 715
Query: 718 YSKGLLEDVASHFKLK-CDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRS 776
YS L+ED S F K G+ +P YGL++ +FHGL+P+EELVHSISTRE +VRS
Sbjct: 716 YSSRLVEDCFSSFVDKHPPIVGNQHPPEAYGLVQNSYFHGLNPYEELVHSISTREAIVRS 775
Query: 777 SRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGLK-AGDNASYLFPAGEH 835
SRGL+EPGTLFKNLMAILRDVV+CYDGTVRN+CSNSI+Q +Y A D S L P GE
Sbjct: 776 SRGLTEPGTLFKNLMAILRDVVICYDGTVRNICSNSIMQLKYNEDDATDIPSALTP-GEP 834
Query: 836 VGVLAATAMSNPAYKAVLDASPSSNCSWELMKEILLCKVHFRNEPIDRRVILYLNDCDCG 895
VGVLAATA+SNPAYKAVLDAS S+N SW MKEIL KV ++N+ DR+VIL+LNDC C
Sbjct: 835 VGVLAATAISNPAYKAVLDASQSNNTSWASMKEILQTKVSYKNDTNDRKVILFLNDCSCP 894
Query: 896 RSYCRENAAYAVKNQLRKVSLKDTAVDFIVEYQQQRKRKGSEIDAGLVGHIHLDEVKLEE 955
+ +C+E AA AV+N+L++V+L+D A D +EY +Q SE LVGHIHL++ +L+
Sbjct: 895 KKFCKEKAAIAVQNRLKRVTLEDCATDICIEYHKQILDGSSEATPALVGHIHLEKARLDM 954
Query: 956 LKINMAEVFQRCQE-KLDSFNRKRKFNQIFKRTEL------FFSESCVSPNF-SAPCLTF 1007
+ ++ ++ Q+CQE L +K +FK+ F + + PCL F
Sbjct: 955 INVSTEDILQKCQEVSLKHGKKKGHLGHLFKKITFSTCDCSFTQKPMIDGKLPKVPCLQF 1014
Query: 1008 IWPAGDGNDLHETTK----ILADTICPALLDTIIQGDPRINSANIIWVNPDTNTWVRNPS 1063
+ + D L E+ + +LA+++C LLDTII+GDPRI A I+WV D +WV+N
Sbjct: 1015 SF-SEDIPMLSESVERAVSVLANSLCDVLLDTIIKGDPRIQEAKIMWVGSDAQSWVKNTR 1073
Query: 1064 KSSNGELALDIILEKESIKQNGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQIQELLGISC 1123
K S GE ++I++EK + GDAWRI +D+C+PV+ LIDTRRSIPY I+Q++ELLGISC
Sbjct: 1074 KVSKGEPTVEIVVEKNEASKQGDAWRIAMDACIPVIDLIDTRRSIPYGIQQVRELLGISC 1133
Query: 1124 TFDQAIQRLAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFT 1183
+FDQ +QRL+ ++K VAKG+L++HLIL+A+SMTC GNL GFNTGGY+A R L +QVPFT
Sbjct: 1134 SFDQIVQRLSTTMKTVAKGILKDHLILVANSMTCTGNLYGFNTGGYRATFRALKVQVPFT 1193
Query: 1184 DATLFTPKRCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSKFDVLWDAKEIKSNDLDG 1243
++TLFTP +CFE+AAEKCH+D+L +V+SCSWGK A+GTGS F +LW+ ++KSN G
Sbjct: 1194 ESTLFTPMKCFEKAAEKCHSDALGCVVSSCSWGKHAALGTGSSFQILWNENQLKSNKEYG 1253
Query: 1244 MDVYNFLHMVKSLTNGEEENNACXXXXXXXXXXXXNADYSLSPQ--HTSGVDAVFEETFE 1301
+Y+FL MV+ T+ E+ D LSP+ T GV FE+ FE
Sbjct: 1254 DGLYDFLAMVR--TDQEKARYTFLDDVDYLVEDNAMDDICLSPELNGTHGV-PTFEDNFE 1310
Query: 1302 AMNGPESNGW----------------GSNTDR---------------------------- 1317
+ N W G+++D
Sbjct: 1311 HQDTQNGNSWENGTKANASWEQNASAGNDSDNWGGWSNAAAAADTGAAKPADQGNSSWDV 1370
Query: 1318 ---TETNSTQWSAWESNKAETKDGGSQRVHE-DSWTSRDVMK-------DDSQMTNAWDG 1366
E +ST W W + KA+ S E D+W+ R K + TN +
Sbjct: 1371 PATAENDSTDWGGWGNEKAKDNRTVSTEPAELDTWSDRGAKKGTDGGGGSWGKQTNTCED 1430
Query: 1367 ---NVEQT----KTISNDWTAWGKNKSEIQDNVAEKAEGECGSS---EKWKTAVIQEGSS 1416
N+E+ + S + W K S+ D +K C + + WK + S
Sbjct: 1431 SGTNLERNSWAKRPSSPSLSTWAKKNSDGGDGTWDKQANSCKKNVEQDSWKNMPV---SP 1487
Query: 1417 KSNAWKSNIEQRSDEDSWTSQKLKADVIQD-SSKPSSWGAKPKSNDSSNWGRNKDEIQDV 1475
NAW R D +W +++A +++ + S+ G+ KSN
Sbjct: 1488 ARNAWNKKESSRGDA-TW---EMRASTLEEKKTSESNEGSWEKSN--------------- 1528
Query: 1476 VSRRAEDDSWSSKKQLSSD--ATQEDSSKFSFWGGNKDTTKPKSNDWSSWGGNRDGIQDG 1533
A+ DSW + + SSD A +++ + WG +D WG Q
Sbjct: 1529 ----AQKDSWGNTQHGSSDKMAVKDNDMQQDPWGHIATQNINAQDDL--WGSVAAKAQTS 1582
Query: 1534 GSKR--AQDDSWSSQKDVTRESSSKVDAWGANNEASNPKSNDWSA 1576
++ AQDDSW + ++S+ ++WG N A++P N W A
Sbjct: 1583 TAENTDAQDDSWGAVA-AKAQTSTAQESWG--NVAASPSDNAWKA 1624
>J3L9M9_ORYBR (tr|J3L9M9) DNA-directed RNA polymerase OS=Oryza brachyantha
GN=OB02G13460 PE=3 SV=1
Length = 2034
Score = 1299 bits (3362), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 698/1601 (43%), Positives = 966/1601 (60%), Gaps = 88/1601 (5%)
Query: 1 MEENPT-LSFLDGNVVGIQFGMATRQEICTXXXXXXXXXXXXXXXNPFLGLPLEYGRCES 59
MEE+ + + +G + I+ +AT EI NPFLGLPLE G+CES
Sbjct: 42 MEEDQSAIPVAEGAIKSIKLSLATEDEIRIYSINDCPVTHPSQLGNPFLGLPLETGKCES 101
Query: 60 CGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKMKKTKFPSSSSGLAQR 119
CG SE GKCEGHFGYIELPVPIYHP HV+EL+++L+LVC CL++KK K +
Sbjct: 102 CGASENGKCEGHFGYIELPVPIYHPCHVTELRQILNLVCFKCLRVKKGKVKHTEGKDNTS 161
Query: 120 LLSPCCQEPNAAQVSIREVKTGDGACYLVLKVSKSK-MQDGFWRFLDKYGYRYE-VDHTR 177
LS C + +S++E KT DGA L LK K M +G W FLDKYG+ + H R
Sbjct: 162 ALS-CYYCRDLPALSLKENKTADGAVRLELKAPPRKFMTEGSWNFLDKYGFHHGGTSHCR 220
Query: 178 ALLPCEVMEMIKRFPLETKKKLAGKGYFPQDGYVIKYLPVPPNCLXXXXXXXXXXXXXXX 237
LLP E + ++K+ P ETK+KLA +GY Q GYV+KYLPVPPNCL
Sbjct: 221 TLLPEEALNILKKIPDETKRKLAARGYIAQPGYVMKYLPVPPNCLYIPEFTDGQSIMSYD 280
Query: 238 XXXTFLRKLLRKVEVIRSSRSGEPNFESHQVEANDLQSVVDQYLQIRGCAKPARDIETHF 297
+ L+K+L+K+E I+ SR+G PNFESH+VE++DLQ + QY+ +RG + +D F
Sbjct: 281 ISISLLKKVLQKIEQIKKSRAGSPNFESHEVESSDLQLSIAQYIHLRGTTRGPQDNTKRF 340
Query: 298 GVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEE 357
++ + S S K WL+KM++LFISKGSGFSSRSV+TGD Y ++ VG+P E+A+RITFEE
Sbjct: 341 SISTDSSALSTKQWLEKMRTLFISKGSGFSSRSVLTGDPYIGVDMVGLPSEVAKRITFEE 400
Query: 358 RVNSHNMCYLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFIN 417
+V + N+ LQ++VD+ LCL Y++G +TY++ GSKGHT LK GQ + RRI+DGDIVF+N
Sbjct: 401 QVTNININKLQEIVDKGLCLTYRDGQATYAITVGSKGHTTLKVGQTISRRIVDGDIVFLN 460
Query: 418 RPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELF 477
RPP+THKHSLQA Y+H+DHTVKINPLIC P ADFDGDCVH++YPQSLAAKAE +ELF
Sbjct: 461 RPPSTHKHSLQAFRAYVHEDHTVKINPLICSPFAADFDGDCVHIYYPQSLAAKAEALELF 520
Query: 478 SVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKKGFMDRAAANQMAMFLSLPLPQPALLKAG 537
SVEKQL SSH + + + ANQ+AM ++ LP+PAL+K+
Sbjct: 521 SVEKQLTSSHSGKVNLQLANDSLLALKHMSFRTILSKEVANQLAMNVTYSLPKPALIKSR 580
Query: 538 SGDCYWTSTQILQCALPLSFDCTGGRYLIRESDILGFDLGRDVLPAVINEIAASVFFGKG 597
+WT QI+Q ALP G ++L+R+S I+ DL ++ + +++ S KG
Sbjct: 581 P---HWTIAQIVQGALPKDLTSQGDKHLVRDSTIIKLDLDKESVQTSFSDLLYSTLSVKG 637
Query: 598 PQEALNFFDVLQPFLMECIFSNGFSVGLHDFSISGAVKRITDRNIGKVSPLLYQLRFIYN 657
P EAL F +VLQP LME I +GFSV L DF++ + +NI K S +L Q R N
Sbjct: 638 PGEALQFLNVLQPLLMELILLDGFSVSLQDFNVPKVHLQEAQKNIEKQSIILEQSRCAEN 697
Query: 658 ELVAQQLEKHMQDIELPAIKFASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRL 717
+ V +++ +++DI+ F K S LG +ID KS ++ KV QQ+GF+G QL+ G+
Sbjct: 698 QFVEMRVDNNLKDIKQQISDFVVKRSHLGLLIDPKSDPSVSKVVQQLGFVGLQLYREGKF 757
Query: 718 YSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSS 777
YS+ L+ED S+F K + YGL++ +FHGL+P+EELVH+ISTRE +VRSS
Sbjct: 758 YSRRLVEDCFSNFVNKHPAVRKEHSPEAYGLVRSSYFHGLNPYEELVHAISTREAIVRSS 817
Query: 778 RGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGLK-AGDNASYLFPAGEHV 836
RGL+EPGTLFKNLMA+LRDVV+CYDGTVRNVCS SIIQ +Y + A D S + P GE V
Sbjct: 818 RGLTEPGTLFKNLMALLRDVVICYDGTVRNVCSKSIIQLKYKEEDALDFPSAIAP-GEPV 876
Query: 837 GVLAATAMSNPAYKAVLDASPSSNCSWELMKEILLCKVHFRNEPIDRRVILYLNDCDCGR 896
GVLAATA+SNPAYKAVLDAS S+N SWE MKEIL ++N+ DR++IL+LNDC C +
Sbjct: 877 GVLAATAISNPAYKAVLDASQSNNTSWERMKEILQTTTRYKNDTKDRKIILFLNDCSCAK 936
Query: 897 SYCRENAAYAVKNQLRKVSLKDTAVDFIVEYQQQRKRKG-SEIDAGLVGHIHLDEVKLEE 955
+C+E AA AV+ LR+++L+D A D +EYQ+Q G SE LVGHIH D LE
Sbjct: 937 KFCKEKAAIAVQGCLRRITLEDCATDICIEYQKQISLDGTSEASPALVGHIHFDRAHLER 996
Query: 956 LKINMAEVFQRCQEKLDSFNRKRKF------NQIFKRTELFFSESCVSPNFS-APCLTFI 1008
+ +++ ++FQ+CQE + +K+ N F + F++ + + PCL F
Sbjct: 997 INVSIEDIFQKCQEVSGKYGKKKGHLSHLFKNITFSICDCSFTQKLIDGKLAKVPCLQFF 1056
Query: 1009 WPAGD---GNDLHETTKILADTICPALLDTIIQGDPRINSANIIWVNPDTNTWVRNPSKS 1065
+P + + +LAD++C LL+TII+GDPRI A I+WV D +WV+N K
Sbjct: 1057 FPESNTMLSESVEGAVNLLADSVCGVLLNTIIKGDPRIQEAKIVWVGSDATSWVKNTKKE 1116
Query: 1066 SNGELALDIILEKESIKQNGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQIQELLGISCTF 1125
S GE A++II+E++ GD+WRI +D+C+PVL LIDTRRSIPY I+Q++ELLGISC F
Sbjct: 1117 SKGEPAVEIIVEEQEALHTGDSWRITMDACIPVLDLIDTRRSIPYGIQQLRELLGISCAF 1176
Query: 1126 DQAIQRLAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDA 1185
DQ +QRL+ +V+MVAK VL++HL+L+A+SMT GNL GFNT GYK R L +QVPFT++
Sbjct: 1177 DQVVQRLSTTVRMVAKDVLKDHLVLVANSMTFTGNLNGFNTAGYKTTFRSLKVQVPFTES 1236
Query: 1186 TLFTPKRCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSKFDVLWDAKEIKSNDLDGMD 1245
TL TP +CFE+AAEKCH+DSL +V+SCSWGK A GTGS F +LW+ ++KSN G
Sbjct: 1237 TLITPMKCFEKAAEKCHSDSLGCVVSSCSWGKYAASGTGSSFQILWNESQLKSNKEYGDG 1296
Query: 1246 VYNFLHMVKSLTNGEEENNACXXXXXXXXXXXXNADYSLSPQHTSGV-DAVFEETFEAMN 1304
+Y++L +V++ EE+ D LSP+ + F++ E +
Sbjct: 1297 LYDYLALVRT---DEEKARYTFFDDVDYLAEENETDVCLSPELEGTIGQPTFDDNLEEQD 1353
Query: 1305 GPESNGWGSNTDRTETNSTQWSAWESNKAETKD----GGSQRVHEDSWTSRDVMKDDSQM 1360
++N W E + +WE N + D GG + T+ V K Q
Sbjct: 1354 FQKNNSW-------ENGTAANGSWEQNGSAGDDSDKWGGWNAAAVGADTA--VTKQADQE 1404
Query: 1361 TNAWDGNVEQTKTISNDWTAWGKNKSEIQDNVAEKAEGECGSSEKWKTAVIQEGSSKSNA 1420
+ WD K+ S+DW WG K ++++N+ E+ ++ +A
Sbjct: 1405 KSCWDVPAAVEKS-SSDWGGWGTEKRKVKENLPEEP-------------------AEHDA 1444
Query: 1421 WKSNIEQRSDEDSWTSQKLKADVIQDSSKPSSWGAKPKSNDSSNWGRNKDEIQDVVSRRA 1480
W + + +W Q +D + + SWG +S A
Sbjct: 1445 WLAKRSMDGGDINWGKQPSISDEFKKNVDQGSWGN--------------------MSLSA 1484
Query: 1481 EDDSWSSKKQLSSDATQEDSSKFSFWGGNKDTTKPKSNDWSSWGGNRDGIQDGGS---KR 1537
E+ +W KK DAT S GG+ +P S+W N+ +GGS
Sbjct: 1485 ENRAWDKKKPDGGDATWNKQSSTQNDGGDTWEKQP-----SAWKENKGRGSNGGSWEKSN 1539
Query: 1538 AQDDSWSSQKDVTRESSSKVDAWGANNEASNPKSNDWSAWG 1578
+Q SW + + ++ K D WG+ +N N +WG
Sbjct: 1540 SQKGSWGND-EAHNNANMKQDTWGSVTAHNNDTQN--KSWG 1577
>F6I5R3_VITVI (tr|F6I5R3) DNA-directed RNA polymerase OS=Vitis vinifera
GN=VIT_13s0067g03120 PE=3 SV=1
Length = 996
Score = 1276 bits (3301), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 625/997 (62%), Positives = 776/997 (77%), Gaps = 9/997 (0%)
Query: 1 MEENPTLSFLDGNVVGIQFGMATRQEICTXXXXXXXXXXXXXXXNPFLGLPLEYGRCESC 60
MEE+ + + LDG + GI+FG+ATRQEIC NPFLGLPLE+G+CESC
Sbjct: 1 MEEDSS-TILDGEISGIRFGLATRQEICIASVSDCPISHASQLTNPFLGLPLEFGKCESC 59
Query: 61 GTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKMKKTKFPSSSSGLAQRL 120
GT+E G+CEGHFGYIELP+PIYHP HVSELK+MLSL+CL CLK++K+K +++G+ ++L
Sbjct: 60 GTAEPGQCEGHFGYIELPIPIYHPGHVSELKRMLSLLCLKCLKIRKSKV--TNNGITEQL 117
Query: 121 LSPCCQEPNAAQVSIREVKTGDGACYLVLKV-SKSKMQDGFWRFLDKYGYRYEVDHTRAL 179
L+PCCQ+ + QVS+RE + +GAC+L LK+ S+S+ +DGFW FL +YGYRY + +R L
Sbjct: 118 LAPCCQD--SPQVSVREFRPTEGACFLELKIPSRSRPKDGFWDFLARYGYRYGHNLSRIL 175
Query: 180 LPCEVMEMIKRFPLETKKKLAGKGYFPQDGYVIKYLPVPPNCLXXXXXXXXXXXXXXXXX 239
LP EVME+++R P +T+KKL KGYFPQDGY+++YLPVPPNCL
Sbjct: 176 LPSEVMEILRRIPEDTRKKLVRKGYFPQDGYILQYLPVPPNCLSVPDISDGVSIMSSDLS 235
Query: 240 XTFLRKLLRKVEVIRSSRSGEPNFESHQVEANDLQSVVDQYLQIRGCAKPARDIETHFGV 299
+ L+K+L+++EVI+ SRSGEPNFESH++EAN+LQS ++QYL++RG AK +R ++T FG
Sbjct: 236 VSMLKKVLKQIEVIKGSRSGEPNFESHKIEANNLQSSIEQYLEVRGTAKTSRSLDTRFGS 295
Query: 300 NKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERV 359
+KE +++S KAWL+KM++LFI KGSGFSSRSVITGD YKR+NE+G+P EIAQRITFEERV
Sbjct: 296 SKEPNESSTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGLPFEIAQRITFEERV 355
Query: 360 NSHNMCYLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRP 419
N HNM +LQ LVDE LCL Y++G+STYSLREGSKGHT+L+PGQ+VHRRIMDGDIVFINRP
Sbjct: 356 NVHNMKHLQNLVDEKLCLTYRDGLSTYSLREGSKGHTFLRPGQVVHRRIMDGDIVFINRP 415
Query: 420 PTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSV 479
PTTHKHSLQAL VY+HDDHTVKINPLICGPL ADFDGDCVHLFYPQSL AKAEV+ELFSV
Sbjct: 416 PTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCVHLFYPQSLGAKAEVLELFSV 475
Query: 480 EKQLLSSHXXXXXXXXXXXXXXXXXXXVKKGFMDRAAANQMAMFLSLPLPQPALLKAG-S 538
EKQLLSSH ++ F+++AAA Q+ MF+S+ LP+PALLK+ S
Sbjct: 476 EKQLLSSHSGNLNLQLATDSLLSLKVLFERYFLNKAAAQQLVMFVSMSLPRPALLKSPCS 535
Query: 539 GDCYWTSTQILQCALPLSFDCTGGRYLIRESDILGFDLGRDVLPAVINEIAASVFFGKGP 598
G C WT+ QILQ ALP FDC G R+ I +S IL D RDVL +++NEI S+F KGP
Sbjct: 536 GPC-WTALQILQTALPSYFDCIGERHWISKSAILKVDYNRDVLQSLVNEIVTSIFSEKGP 594
Query: 599 QEALNFFDVLQPFLMECIFSNGFSVGLHDFSISGAVKRITDRNIGKVSPLLYQLRFIYNE 658
E L FFD LQP LME +FS GFSV L DFSI V + +N+ +S LLY LR +YNE
Sbjct: 595 NEVLKFFDSLQPLLMENLFSEGFSVSLEDFSIPSEVTQNIQKNVEDISSLLYNLRSMYNE 654
Query: 659 LVAQQLEKHMQDIELPAIKFASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLY 718
L+ Q E H++ ++P F SS LG++IDSKS SA++KV QQIGFLGQQL +G+ Y
Sbjct: 655 LLQLQAENHLRLTKVPVANFILNSSALGNLIDSKSDSAINKVVQQIGFLGQQLSEKGKFY 714
Query: 719 SKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSR 778
S+ L+E +A FK K + G YPS E+GL++ CFFHGLDP+EE+VHSISTREI+VRSSR
Sbjct: 715 SRTLVEGMAYLFKSKYPFHGADYPSGEFGLIRSCFFHGLDPYEEMVHSISTREIIVRSSR 774
Query: 779 GLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGLKAGDNASYLFPAGEHVGV 838
GLSEPGTLFKNLMAILRDVV+CYDGTVRNVCSNSIIQFEYG+KA + FPAGE VGV
Sbjct: 775 GLSEPGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQFEYGVKARTKPQHFFPAGEPVGV 834
Query: 839 LAATAMSNPAYKAVLDASPSSNCSWELMKEILLCKVHFRNEPIDRRVILYLNDCDCGRSY 898
LAATAMSNPAYKAVLD+SPSSN SWELMKEILLC+V+F+N+ IDRRVILYLNDCDCGR Y
Sbjct: 835 LAATAMSNPAYKAVLDSSPSSNSSWELMKEILLCQVNFKNDLIDRRVILYLNDCDCGRKY 894
Query: 899 CRENAAYAVKNQLRKVSLKDTAVDFIVEYQQQRKRKG-SEIDAGLVGHIHLDEVKLEELK 957
CRENAAY VKNQL+K SLKDTAV+F++EY +Q G SE GLVGHIHL+++ L++L
Sbjct: 895 CRENAAYLVKNQLKKASLKDTAVEFMIEYVKQHAVSGSSEPGTGLVGHIHLNKLLLQDLN 954
Query: 958 INMAEVFQRCQEKLDSFNRKRKFNQIFKRTELFFSES 994
++M EV Q+C+E ++SF +K+ FK+ L F S
Sbjct: 955 VSMQEVCQKCEETINSFRKKKNVGPFFKKIILSFRTS 991
>B9RGA8_RICCO (tr|B9RGA8) DNA-directed RNA polymerase OS=Ricinus communis
GN=RCOM_1452510 PE=3 SV=1
Length = 991
Score = 1267 bits (3279), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 630/990 (63%), Positives = 755/990 (76%), Gaps = 12/990 (1%)
Query: 2 EENPTLSFLDGNVVGIQFGMATRQEICTXXXXXXXXXXXXXXXNPFLGLPLEYGRCESCG 61
+EN SFL+G VVGI+FG+AT +EI NPFLGLPLE+G+CESCG
Sbjct: 4 KENTQSSFLEGEVVGIKFGLATYKEISAASVSDCPISHSSQLTNPFLGLPLEFGKCESCG 63
Query: 62 TSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKMKKTKFPSSSSGLAQRLL 121
TSE GKCEGHFGYIELP+PIYHPSHVSELK+MLSL+CL CLK+K K SSG+A+RL
Sbjct: 64 TSEPGKCEGHFGYIELPIPIYHPSHVSELKRMLSLLCLKCLKLKTNKI--KSSGVAERLF 121
Query: 122 SPCCQEPNAAQVSIREVKTGDGACYLVLKV-SKSKMQDGFWRFLDKYGYRYEVDHTRALL 180
S CC+E AAQ+SI+EVKT DGA L LK+ S+ +++DGFW FL++YG+RY D TR LL
Sbjct: 122 S-CCEE--AAQISIKEVKTTDGAYILQLKLPSRMRLRDGFWNFLERYGFRYGDDITRTLL 178
Query: 181 PCEVMEMIKRFPLETKKKLAGKGYFPQDGYVIKYLPVPPNCLXXXXXXXXXXXXXXXXXX 240
PCEV+EM++R P +T+KKLA KGYFPQDGY+++Y+PVPPNCL
Sbjct: 179 PCEVLEMLRRIPQDTRKKLAKKGYFPQDGYIMRYVPVPPNCLSVPDISDGVSVMSSDLSI 238
Query: 241 TFLRKLLRKVEVIRSSRSGEPNFESHQVEANDLQSVVDQYLQIRGCAKPARDIETHFGVN 300
+ L+K+L++VE+I+SSRSGEPNFESH+VEA DLQS VDQYLQ+RG AK ARD+ FGV+
Sbjct: 239 SMLKKVLKQVEIIKSSRSGEPNFESHEVEAVDLQSAVDQYLQVRGTAKSARDVGERFGVH 298
Query: 301 KELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVN 360
KE +D+S KAWL+KM++LFI KGSGFSSRSVITGD YK +NE+GIP EIAQRITFEERVN
Sbjct: 299 KESNDSSTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKCVNEIGIPSEIAQRITFEERVN 358
Query: 361 SHNMCYLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPP 420
+HNM YLQ+LVD LCL Y++G STYSLREGSKGHT+L+ GQIVHRRIMDGD+VFINRPP
Sbjct: 359 AHNMQYLQELVDNKLCLTYRDGSSTYSLREGSKGHTFLRLGQIVHRRIMDGDMVFINRPP 418
Query: 421 TTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVE 480
TTHKHSLQAL VY+HD HTVKINPLICGPL ADFDGDC+HLFYPQSLAAKAEV+ELFSVE
Sbjct: 419 TTHKHSLQALSVYVHDGHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVE 478
Query: 481 KQLLSSHXXXXXXXXXXXXXXXXXXXVKKGFMDRAAANQMAMFL-SLPLPQPALLKAGSG 539
KQLLSSH F+DRAAA Q+AMF+ S LPQPAL KA
Sbjct: 479 KQLLSSHSGNLNLQLTSDSLLSLKTMFNTYFLDRAAAQQLAMFVSSSSLPQPALWKAHCS 538
Query: 540 DCYWTSTQILQCALPLSFDCTGGRYLIRESDILGFDLGRDVLPAVINEIAASVFFGKGPQ 599
WT+ QILQ ALP FDC+G RYLI +DI+ D RDV+ AVIN+I S+FF KGP
Sbjct: 539 VPIWTALQILQTALPSQFDCSGERYLISNTDIVKVDFSRDVVQAVINDIVISMFFEKGPD 598
Query: 600 EALNFFDVLQPFLMECIFSNGFSVGLHDFSISGAVKRITDRNIGKVSPLLYQLRFIYNEL 659
FF+ LQP LME +FS GFSVGL DF IS A T R+ +S LL QLR YNEL
Sbjct: 599 AVFKFFNSLQPLLMESLFSEGFSVGLEDFYISRAAIGGTRRDFKVISSLLSQLRSTYNEL 658
Query: 660 VAQQLEKHMQDIELPAIKFASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYS 719
+A QLE H++ +LP F + S +GD+ID KS SA+ KV QQIGFLG Q+ RG+ Y+
Sbjct: 659 MALQLENHIRRAKLPVADFIVRLSSIGDLIDYKSDSAMTKVVQQIGFLGLQISDRGKFYT 718
Query: 720 KGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRG 779
K L+ED+A HF+ K D D YPSA++GL++ CFFHGLDP+EE+VHSIS RE+MVRS+RG
Sbjct: 719 KTLVEDMALHFESKYPSDID-YPSAKHGLIQSCFFHGLDPYEEMVHSISAREVMVRSTRG 777
Query: 780 LSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGLKAGDNASYLFPAGEHVGVL 839
LSEPGTLFKNLMAILRDVV+CYDGTVRNVCSNSIIQFEYG+KAG A LFPAGE VGVL
Sbjct: 778 LSEPGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQFEYGMKAGIKAQSLFPAGEPVGVL 837
Query: 840 AATAMSNPAYKAVLDASPSSNCSWELMKEILLCKVHFRNEPIDRRVILYLNDCDCGRSYC 899
AATAMSNPAYKAVLD++PSSN SWELMKEIL C+V+F+N+ DRRVILY N C CG+ YC
Sbjct: 838 AATAMSNPAYKAVLDSTPSSNSSWELMKEILQCRVNFKNDITDRRVILYFNYCGCGKFYC 897
Query: 900 RENAAYAVKNQLRKVSLKDTAVDFIVEYQQQRKRKGSEIDAGLVGHIHLDEVKLEELKIN 959
+E AY+VKN L KV LKD A+ F+ EY+ Q + DAGLVGH+HL + KL+EL ++
Sbjct: 898 QERLAYSVKNHLEKVILKDIALCFMCEYKSQ----PTIADAGLVGHVHLKKTKLQELNVS 953
Query: 960 MAEVFQRCQEKLDSFNRKRKFNQIFKRTEL 989
M + ++C E + SF +K+K +FK+ E
Sbjct: 954 MEVIHRKCSETISSFGKKKKMGNLFKKIEF 983
>M8BMS2_AEGTA (tr|M8BMS2) DNA-directed RNA polymerase II subunit RPB1-B OS=Aegilops
tauschii GN=F775_02057 PE=4 SV=1
Length = 2017
Score = 1266 bits (3275), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 715/1728 (41%), Positives = 987/1728 (57%), Gaps = 170/1728 (9%)
Query: 1 MEENPTLSFL--DGNVVGIQFGMATRQEICTXXXXXXXXXXXXXXXNPFLGLPLEYGRCE 58
MEE + L +G + I+ ++T +EICT NPFLGLPLE G+CE
Sbjct: 45 MEEEDQSAVLVAEGAIKSIKLSLSTEEEICTYSINDCPVTHPSQLGNPFLGLPLETGKCE 104
Query: 59 SCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKMKKTKFPSSSSGLAQ 118
SCG +E GKCEGHFG+IELPVP+YHP HVSEL+++LS+VCL CL++KK K +G
Sbjct: 105 SCGATENGKCEGHFGFIELPVPVYHPCHVSELRQLLSMVCLMCLRIKKGKV-KQKNGKEN 163
Query: 119 RLLSPCCQEPNAAQVSIREVKTGDGACYLVLKVS-KSKMQDGFWRFLDKYGYRYE--VDH 175
++ C + ++E+KT DGA L L+ K M + W FL+KYG + H
Sbjct: 164 VSVTACHYCRGLPALYLKEIKTEDGAFRLELRAPPKKHMTERSWDFLNKYGEFHHGGASH 223
Query: 176 TRALLPCEVM-------------------------------------------------- 185
R LLP E++
Sbjct: 224 CRTLLPVELLWTVKIQIHPLSLGRTMLFETFRKISRIGDVCTRGVPYMAKAFGDMTLRAF 283
Query: 186 EMIKRFPLETKKKLAGKGYFPQDGYVIKYLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRK 245
++K+ P +TKKKLA +G+ Q GYV+KYLPVPPNCL + L+K
Sbjct: 284 NILKKIPDDTKKKLAARGFIAQPGYVMKYLPVPPNCLYIPEFTDGQSIMSYDISISLLKK 343
Query: 246 LLRKVEVIRSSRSGEPNFESHQVEANDLQSVVDQYLQIRGCAKPARDIETHFGVNKELSD 305
+L+K+E I+ SRSG PNFESH E+ DLQ + QY+Q+RG K +D + F V+ + S
Sbjct: 344 ILQKIEQIKKSRSGSPNFESHDSESADLQLSIGQYIQLRGTTKGPQDAK-RFAVSTDSSH 402
Query: 306 ASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMC 365
S K WL+KMK+LFISKGSGFSSRSV+TGD Y + VG+P E+A+RITFEE+V N+
Sbjct: 403 LSTKQWLEKMKTLFISKGSGFSSRSVLTGDPYIGADVVGLPSEVAKRITFEEQVTDININ 462
Query: 366 YLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKH 425
LQ++VD+ LCL Y++G +TY++ GSKG+T LK GQ + RRI+DGD+VF+NRPP+THKH
Sbjct: 463 RLQEVVDKGLCLTYRDGQTTYAITVGSKGYTTLKVGQTISRRIVDGDVVFLNRPPSTHKH 522
Query: 426 SLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLS 485
SLQA VYIHDDHTVKINPLIC PL ADFDGDCVH++YPQSLAAKAE +ELFSVEKQL +
Sbjct: 523 SLQAFTVYIHDDHTVKINPLICSPLAADFDGDCVHIYYPQSLAAKAEALELFSVEKQLTN 582
Query: 486 SHXXXXXXXXXXXXXXXXXXXVKKGFMDRAAANQMAMFLSLPLPQPALLKAGSGDCYWTS 545
SH + + + +ANQ+AM LSL LP PA++K S C WT
Sbjct: 583 SHNGKVNLQLANDSLLALKHMSSRTMLSKESANQLAMLLSLSLPPPAVVK--SKPC-WTI 639
Query: 546 TQILQCALPLSFDCTGGRYLIRESDILGFDLGRDVLPAVINEIAASVFFGKGPQEALNFF 605
QI+Q ALP C G R+L+R+S ++ D+ ++ + A +++ +S+ KGP +AL F
Sbjct: 640 AQIMQSALPAELTCEGDRFLVRDSTVIKLDIDKESVQASFSDLVSSILAVKGPGDALKFL 699
Query: 606 DVLQPFLMECIFSNGFSVGLHDFSISGAVKRITDRNIGKVSPLLYQLRFIYNELVAQQLE 665
+ LQP LME + +GFSV L DFS+ + I K S +L Q R ++ V +++
Sbjct: 700 NALQPLLMEFLLLDGFSVSLQDFSVPKPLLEEAQECIKKQSLVLEQSRCSSSQSVETRVD 759
Query: 666 KHMQDIELPAIKFASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLED 725
+++D++ F KSSRLG +ID KS S++ KV QQ+ F+G QL+ G+ YS+ L++D
Sbjct: 760 NNLKDVKQQIADFVVKSSRLGLLIDPKSDSSVSKVVQQLAFVGPQLYREGKFYSRRLVDD 819
Query: 726 VASHF--KLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEP 783
S F + DG +P YGL++ +FHGL+P+EELVHSI TRE +VRSSRGL+EP
Sbjct: 820 CFSSFVNRHPPIEDGVQHPPEAYGLVQSAYFHGLNPYEELVHSICTRETIVRSSRGLTEP 879
Query: 784 GTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGLKAGDNASYLFPAGEHVGVLAATA 843
GTLFK+LMAILRDVV+CYDGTVRN+CSNSI+Q +Y + + GE VGVLAATA
Sbjct: 880 GTLFKSLMAILRDVVICYDGTVRNICSNSIMQLKYKEEDDTDFPSAIAPGEPVGVLAATA 939
Query: 844 MSNPAYKAVLDASPSSNCSWELMKEILLCKVHFRNEPIDRRVILYLNDCDCGRSYCRENA 903
+SNPAYK VLD+S S+N SWELMKEIL KV ++N+ DR+VIL+LNDC C + +C+E A
Sbjct: 940 ISNPAYKTVLDSSQSNNTSWELMKEILKTKVSYKNDAKDRKVILFLNDCSCPKKFCKEKA 999
Query: 904 AYAVKNQLRKVSLKDTAVDFIVEYQQQRKRKG-SEIDAGLVGHIHLDEVKLEELKINMAE 962
A AV+ L++V+L+D A D +EY++Q SE VGHIHL++ LE++ ++ E
Sbjct: 1000 AIAVQGCLKRVTLEDCATDICIEYKKQVSLDAISEATPAFVGHIHLEKAHLEKINVSTDE 1059
Query: 963 VFQRCQEKLDSF-NRKRKFNQIFKRTELFFSESCVSP---NFSAPCLTFIWPAGD---GN 1015
+ Q+CQE N+K +FK+ + + + PCL F + +
Sbjct: 1060 ILQKCQEVSGKHANKKGTLGHLFKKITFSTCDCSFAQKPGDGKVPCLQFSFSEDIPMLSD 1119
Query: 1016 DLHETTKILADTICPALLDTIIQGDPRINSANIIWVNPDTNTWVRNPSKSSNGELALDII 1075
+ + +LAD++C LL+ II+GDPR+ A I WV D +WV++ K S GE A++II
Sbjct: 1120 SVEKAVNVLADSLCGVLLEIIIKGDPRVQEAKITWVGSDATSWVKHTKKISKGEPAVEII 1179
Query: 1076 LEKESIKQNGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQIQELLGISCTFDQAIQRLAAS 1135
+EK+ QNGDAWRI +D+C+PV++LIDT+RSIPY I+Q++ELLGISC+FDQ +QRL+ +
Sbjct: 1180 VEKKEAMQNGDAWRIAMDACIPVMNLIDTQRSIPYGIQQVRELLGISCSFDQVVQRLSKT 1239
Query: 1136 VKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDATLFTPKRCFE 1195
+K VAKG+L++HL+L+A+SMTC GNL GF+ GGY+A R L +QVPFT+ATL TP +CFE
Sbjct: 1240 MKTVAKGILKDHLVLVANSMTCTGNLNGFHNGGYRATFRSLKVQVPFTEATLLTPMKCFE 1299
Query: 1196 RAAEKCHTDSLSSIVASCSWGKPVAVGTGSKFDVLWDAKEIKSNDLDGMDVYNFLHMVKS 1255
+AAEKCH+DSL S+V+SCSWGK A+GTGS F +LW+ ++KSN G +Y+FL +V++
Sbjct: 1300 KAAEKCHSDSLGSVVSSCSWGKHAALGTGSSFQILWNENQLKSNKEYGDGLYDFLALVRT 1359
Query: 1256 LTNGEEENNACXXXXXXXXXXXXNA--DYSLSPQH--TSGVDAVFEETFEAMN------- 1304
++E A NA D LSP+ T G+ FE+ E N
Sbjct: 1360 ----DQEKAAYTFLDDVDYLVEDNAMDDICLSPEMDGTHGM-PTFEDDPEQQNTEKDSSW 1414
Query: 1305 ----------------GPESNGWGSNTDRTETNSTQWSAWESNKAETKDGGSQRVHE-DS 1347
G +S WG + E +ST W+ W + A K S E D+
Sbjct: 1415 ENGTTAGASWERNANAGNDSGNWGGGS-TVENDSTDWAGWGTGPANDKKIVSGEPAEPDT 1473
Query: 1348 WTSRDVMKDDSQMTNAWDGNVEQT-----KTISNDWTAWGKNKSEIQDNVAEKAEGECGS 1402
W + KD W+ K D + W + D+ G +
Sbjct: 1474 WADQGAKKD---TEGGWNNAAAAADTGAAKPAEQDKSCWNAPPAVENDSSGWGGWGTGNA 1530
Query: 1403 SEKWKTAVIQEGSSKSNAWKSNIEQRSDED---SWTSQKLKADVIQDSSKPSSWGAKPKS 1459
+K + EGS++ + W +R + +W K+K +Q WG P
Sbjct: 1531 KDK---NIASEGSAEVDTWADQSGKRDTDGGGANWDKMKVKDHNMQQDQ----WGHVPSQ 1583
Query: 1460 NDSSN---WGRNKDEIQDVVSRR--AEDDSWSS--KKQLSSDATQEDSSKFSF------- 1505
N + WG Q ++ A++DSW S K +S A D+ S+
Sbjct: 1584 NVDAQDDPWGSVAGVAQPSTAKHIDAQNDSWGSVAAKAQTSTAEPMDAGNGSWGSVAAKA 1643
Query: 1506 ---------------------WGG--------NKDTTKPKSNDWSSWGGNRDGIQDGGSK 1536
WG N D +P S W WG Q S
Sbjct: 1644 QTYTAQQESWGNVSASPSDNAWGAAPVSQGPDNSDAKQPDS--WDGWGSAAPVSQGDNSD 1701
Query: 1537 RAQDDSWSSQKDVTRESSSKVDAWGANNEASNP--KSNDWSAWGKNKD 1582
Q DSW + SS D W N +N KS+ W A +D
Sbjct: 1702 AKQPDSWDGWGSAQADDSS-TDKWKTNASGNNKGWKSDGWEAKENRRD 1748
>B9F2S6_ORYSJ (tr|B9F2S6) DNA-directed RNA polymerase OS=Oryza sativa subsp.
japonica GN=OsJ_05410 PE=2 SV=1
Length = 2017
Score = 1249 bits (3232), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 699/1652 (42%), Positives = 972/1652 (58%), Gaps = 121/1652 (7%)
Query: 1 MEENPT-LSFLDGNVVGIQFGMATRQEICTXXXXXXXXXXXXXXXNPFLGLPLEYGRCES 59
MEE+ + + +G + I+ ++T EI T NPFLGLPLE G+CES
Sbjct: 1 MEEDQSAIPVAEGAIKSIKLSLSTEDEIRTYSINDCPVTHPSQLGNPFLGLPLETGKCES 60
Query: 60 CGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKMKKTKFPSSSSGLAQR 119
CG SE GKCEGHFGYIELPVPIYHP HV+EL+++L++VCL CL++KK K +
Sbjct: 61 CGASENGKCEGHFGYIELPVPIYHPCHVTELRQILNVVCLKCLRVKKGKVKQTEGKDNTS 120
Query: 120 LLSPCCQEPNAAQVSIREVKTGDGACYLVLKVSKSK-MQDGFWRFLDKYGYRYE-VDHTR 177
LS C + +S++E+KT DGA L LK+ K M +G W FLDKYG+ + H R
Sbjct: 121 ALS-CYYCRDLPALSLKEIKTADGAFRLELKMPPRKFMTEGSWNFLDKYGFHHGGTSHCR 179
Query: 178 ALLPCEVMEMIKRFPLETKKKLAGKGYFPQDGYVIKYLPVPPNCLXXXXXXXXXXXXXXX 237
LLP E + ++K+ P ETK+KLA +GY Q GYV+KYLPVPPNCL
Sbjct: 180 TLLPEEALNILKKIPEETKRKLAARGYIAQSGYVMKYLPVPPNCLYIPEFTDGQSIMSYD 239
Query: 238 XXXTFLRKLLRKVEVIRSSRSGEPNFESHQVEANDLQSVVDQYLQIRGCAKPARDIETHF 297
+ L+K+L+K+E I+ SR+G PNFESH+VE+ DLQ + QY+ +RG + +D F
Sbjct: 240 ISISLLKKVLQKIEQIKKSRAGSPNFESHEVESCDLQLSIAQYIHLRGTTRGPQDNTKRF 299
Query: 298 GVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEE 357
++ + S S K WL+KM++LFISKGSGFSSRSV+TGD Y ++ +G+P E+A+RITFEE
Sbjct: 300 AISTDPSALSTKQWLEKMRTLFISKGSGFSSRSVLTGDPYIGVDVIGLPSEVAKRITFEE 359
Query: 358 RVNSHNMCYLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFIN 417
+V N+ LQ++VD+ LCL Y++G +TY++ GSKGHT LK GQ + RRI+DGD+VF+N
Sbjct: 360 QVTDINLNRLQEIVDKGLCLTYRDGQATYAITVGSKGHTTLKVGQTISRRIVDGDVVFLN 419
Query: 418 RPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELF 477
RPP+THKHSLQA VY+H+DHTVKINPLIC P ADFDGDCVH++YPQSLAAKAE +ELF
Sbjct: 420 RPPSTHKHSLQAFRVYVHEDHTVKINPLICAPFAADFDGDCVHIYYPQSLAAKAEALELF 479
Query: 478 SVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKKGFMDRAAANQMAMFLSLPLPQPALLKAG 537
SVEKQL SSH + + + AANQ+AM ++ LP PA++K+
Sbjct: 480 SVEKQLTSSHSGKVNLQLVSDSLLALKHMSSRTMLSKEAANQLAMLVTCSLPDPAVIKSK 539
Query: 538 SGDCYWTSTQILQCALPLSFDCTGGRYLIRESDILGFDLGRDVLPAVINEIAASVFFGKG 597
YWT +QI+Q ALP + G ++++R+S I+ DL ++ + +++ S KG
Sbjct: 540 P---YWTISQIVQGALPKALTSQGDKHVVRDSTIIKLDLDKESVQTSFSDLVYSTLSVKG 596
Query: 598 PQEALNFFDVLQPFLMECIFSNGFSVGLHDFSISGAVKRITDRNIGKVSPLLYQLRFIYN 657
P EAL F +VLQP LME I +GFSV L DF++ + +NI K S +L Q RF N
Sbjct: 597 PGEALQFLNVLQPLLMELILLDGFSVSLQDFNVPKVLLEEAQKNIEKQSLILEQSRFAEN 656
Query: 658 ELVAQQLEKHMQDIELPAIKFASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRL 717
++V +++ +++DI+ F K S LG +ID KS S++ KV QQ+GF+G QL+ G+
Sbjct: 657 QVVEMRVDNNLKDIKQQISDFVVKRSHLGLLIDPKSDSSVSKVVQQLGFVGLQLYREGKF 716
Query: 718 YSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSS 777
YS+ L+ED F K + + YGL++ +FHGL+P+EELVH+ISTRE +VRSS
Sbjct: 717 YSRRLVEDCYYTFVNKHPAVREEHSPEAYGLVRSSYFHGLNPYEELVHAISTREAIVRSS 776
Query: 778 RGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGLK-AGDNASYLFPAGEHV 836
RGL+EPGTLFKNLMA+LRDVV+CYDGTVRNVCS SIIQ Y A D S + P GE V
Sbjct: 777 RGLTEPGTLFKNLMALLRDVVICYDGTVRNVCSKSIIQLNYTEDDALDFPSAIGP-GEPV 835
Query: 837 GVLAATAMSNPAYKAVLDASPSSNCSWELMKEILLCKVHFRNEPIDRRVILYLNDC---- 892
GVLAATA+SNPAYKAVLDAS S+N SWE MKEIL ++N+ DR+VIL+LNDC
Sbjct: 836 GVLAATAISNPAYKAVLDASQSNNTSWERMKEILQTTSRYKNDMKDRKVILFLNDCSCAK 895
Query: 893 ---------------------DCGRSYCRENAAYAVKNQLRKV----------------- 914
DC C E+ +A +
Sbjct: 896 KFCKEKAAIAVQGCLRRITLEDCATDICIEDGNWAAPAGFQHPVPPPQCKILPVPIPIPA 955
Query: 915 --SLKDTAVDF-----------IVEYQQQRKRKG-SEIDAGLVGHIHLDEVKLEELKINM 960
S+K V +V YQ+Q G SE LVGHIHLD LE + I+
Sbjct: 956 HGSVKFPPVPIPAPEHLKYNIHVVRYQKQIGLDGTSEAAPALVGHIHLDRAHLERINIST 1015
Query: 961 AEVFQRCQEKLDSFNRKRKF------NQIFKRTELFFSESCVSPNFSA-PCLTFIWPAGD 1013
++ Q+CQE + +K+ N F + F++ V PCL F D
Sbjct: 1016 EDILQKCQEVSGKYGKKKGHLSNLFKNITFSTCDCLFTQKLVDGKLPKLPCLQFF--VSD 1073
Query: 1014 GNDLHETTK----ILADTICPALLDTIIQGDPRINSANIIWVNPDTNTWVRNPSKSSNGE 1069
+ E+ + +LAD++C LL+TII+GDPRI A I+WV D +WV+N K+S GE
Sbjct: 1074 NMIVSESVERAVSVLADSLCGVLLNTIIKGDPRIQEAKIVWVGSDATSWVKNTQKASKGE 1133
Query: 1070 LALDIILEKESIKQNGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQIQELLGISCTFDQAI 1129
A++II+E+E GDAWR +D+C+PVL+LID RRSIPY I+Q++ELLGISC FDQ +
Sbjct: 1134 PAVEIIVEEEEALHIGDAWRTTMDACIPVLNLIDIRRSIPYGIQQVRELLGISCAFDQVV 1193
Query: 1130 QRLAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDATLFT 1189
QRL+ +V+MVAK VL++HL+L+A+SMT GNL GFN GYKA R L +QVPFT++TL T
Sbjct: 1194 QRLSTTVRMVAKDVLKDHLVLVANSMTFTGNLNGFNNAGYKATFRSLKVQVPFTESTLIT 1253
Query: 1190 PKRCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSKFDVLWDAKEIKSNDLDGMDVYNF 1249
P +CFE+AAEKCH+DSL +V+SCSWGK A GTGS F +LW+ ++KSN G +Y++
Sbjct: 1254 PMKCFEKAAEKCHSDSLGCVVSSCSWGKHAASGTGSSFQILWNESQLKSNKEYGDGLYDY 1313
Query: 1250 LHMVKSLTNGEEENNACXXXXXXXXXXXXNADYSLSPQHTSGV-DAVFEETFEAMNGPES 1308
L +V++ EE+ AD LSP+ + +F++ E + +
Sbjct: 1314 LALVRT---DEEKARYTFFDDVDYLAEENEADVCLSPELDGTIGQPIFDDNLEEQDVQNN 1370
Query: 1309 NGWGSNTDRTETNSTQWSAWESNKAETKDGGSQRVHEDSWTSRD--VMKDDSQMTNAWD- 1365
+ W + T T ++WE N + D D+ D V K +Q + WD
Sbjct: 1371 SSWDNGT-------TTNASWEQNGSAGNDSDKWGGWNDAAAGADTGVTKPANQGNSCWDV 1423
Query: 1366 -GNVEQTKTISNDWTAWGKNKSEIQDNVAEKAEGECGSSEKWKTAVIQEGSSKSNAWKSN 1424
VE++ S+DW WG K++ ++ ++E E + W + + +WK
Sbjct: 1424 PATVEKS---SSDWGGWGTEKAKEKEKISE----EPAQHDAWSVQGPKRATDGGASWKKQ 1476
Query: 1425 IEQRSDEDSWTSQKLKADVIQDSSKPSSWGAKPKSNDSSNWGRNKDEIQDVVSRRAEDDS 1484
++D +SW K + S SW + + +WGR DE ++ + ++ S
Sbjct: 1477 SSTQNDGNSWKENKGRG------SNGGSW--EKDNAQKGSWGRGNDEAEN--NNDVQNKS 1526
Query: 1485 WSSKKQLSSDATQEDSSKFSFWGGNKDTTKPKSNDWSSWGGNRDGIQDGGSKRAQDDSWS 1544
W + +++DA +S WG T P N WS+ ++ +G S Q DSW
Sbjct: 1527 WET---VAADA---HASTEKSWGNV--TASPSDNAWSAAPVSQG---NGSSDTKQSDSWD 1575
Query: 1545 SQKDVTRESSSKVDAWGANNEASNPKSNDWSA 1576
K + + D N ++P + W+A
Sbjct: 1576 GWKSAGVDKAINKDKESLGNVPASPSFSAWNA 1607
>I1NXC6_ORYGL (tr|I1NXC6) DNA-directed RNA polymerase OS=Oryza glaberrima PE=3 SV=1
Length = 1630
Score = 1239 bits (3206), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 686/1596 (42%), Positives = 950/1596 (59%), Gaps = 117/1596 (7%)
Query: 2 EENPTLSFLDGNVVGIQFGMATRQEICTXXXXXXXXXXXXXXXNPFLGLPLEYGRCESCG 61
E+ + +G + I+ ++T EI T NPFLGLPLE G+CESCG
Sbjct: 3 EDQSAIPVAEGAIKSIKLSLSTEDEIRTYSINDCPVTHPSQLGNPFLGLPLETGKCESCG 62
Query: 62 TSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKMKKTKFPSSSSGLAQRLL 121
SE GKCEGHFGYIELPVPIYHP HV+EL+++L++VCL CL++KK K + L
Sbjct: 63 ASENGKCEGHFGYIELPVPIYHPCHVTELRQILNVVCLKCLRVKKGKVKQTEGKDNTSAL 122
Query: 122 SPCCQEPNAAQVSIREVKTGDGACYLVLKVSKSK-MQDGFWRFLDKYGYRYE-VDHTRAL 179
S C + +S++E+KT DGA L LK+ K M +G W FLDKYG+ + H R L
Sbjct: 123 S-CYYCRDLPALSLKEIKTADGAFRLELKMPPRKFMTEGSWNFLDKYGFHHGGTSHCRTL 181
Query: 180 LPCEVMEMIKRFPLETKKKLAGKGYFPQDGYVIKYLPVPPNCLXXXXXXXXXXXXXXXXX 239
LP E + ++K+ P ETK+KLA +GY Q GYV+KYLPVPPNCL
Sbjct: 182 LPEEALNILKKIPEETKRKLAARGYIAQSGYVMKYLPVPPNCLYIPEFTDGQSIMSYDIS 241
Query: 240 XTFLRKLLRKVEVIRSSRSGEPNFESHQVEANDLQSVVDQYLQIRGCAKPARDIETHFGV 299
+ L+K+L+K+E I+ SR+G PNFESH+VE+ DLQ + QY+ +RG + +D F +
Sbjct: 242 ISLLKKVLQKIEQIKKSRAGSPNFESHEVESCDLQLSIAQYIHLRGTTRGPQDNTKRFAI 301
Query: 300 NKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERV 359
+ + S S K WL+KM++LFISKGSGFSSRSV+TGD Y ++ +G+P E+A+RITFEE+V
Sbjct: 302 STDPSALSTKQWLEKMRTLFISKGSGFSSRSVLTGDPYIGVDVIGLPSEVAKRITFEEQV 361
Query: 360 NSHNMCYLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRP 419
N+ LQ++VD+ LCL Y++G +TY++ GSKGHT LK GQ + RRI+DGD+VF+NRP
Sbjct: 362 TDINLNRLQEIVDKGLCLTYRDGQATYAITVGSKGHTTLKVGQTISRRIVDGDVVFLNRP 421
Query: 420 PTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSV 479
P+THKHSLQA VY+H+DHTVKINPLIC P ADFDGDCVH++YPQSLAAKAE +ELFSV
Sbjct: 422 PSTHKHSLQAFRVYVHEDHTVKINPLICAPFAADFDGDCVHIYYPQSLAAKAEALELFSV 481
Query: 480 EKQLLSSHXXXXXXXXXXXXXXXXXXXVKKGFMDRAAANQMAMFLSLPLPQPALLKAGSG 539
EKQL SSH + + + AANQ+AM ++ LP PA++K+
Sbjct: 482 EKQLTSSHSGKVNLQLVSDSLLALKHMSSRTMLSKEAANQLAMLVTCSLPDPAVIKSKP- 540
Query: 540 DCYWTSTQILQCALPLSFDCTGGRYLIRESDILGFDLGRDVLPAVINEIAASVFFGKGPQ 599
YWT +QI+Q ALP + G ++++R+S I+ DL ++ + +++ S KGP
Sbjct: 541 --YWTISQIVQGALPKALTSQGDKHVVRDSTIIKLDLDKESVQTSFSDLVYSTLSVKGPG 598
Query: 600 EALNFFDVLQPFLMECIFSNGFSVGLHDFSISGAVKRITDRNIGKVSPLLYQLRFIYNEL 659
EAL F +VLQP LME I +GFSV L DF++ + +NI K S +L Q RF N++
Sbjct: 599 EALQFLNVLQPLLMELILLDGFSVSLQDFNVPKVLLEEAQKNIEKQSLILEQSRFAENQV 658
Query: 660 VAQQLEKHMQDIELPAIKFASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYS 719
V +++ +++DI+ F K S LG +ID KS S++ KV QQ+GF+G QL+ G+ YS
Sbjct: 659 VEMRVDNNLKDIKQQISDFVVKRSHLGLLIDPKSDSSVSKVVQQLGFVGLQLYREGKFYS 718
Query: 720 KGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRG 779
+ L+ED F K + + YGL++ +FHGL+P+EELVH+ISTRE +VRSSRG
Sbjct: 719 RRLVEDCYYTFVNKHPAVREEHSPEAYGLVRSSYFHGLNPYEELVHAISTREAIVRSSRG 778
Query: 780 LSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGLK-AGDNASYLFPAGEHVGV 838
L+EPGTLFKNLMA+LRDVV+CYDGTVRNVCS SIIQ Y A D S + P GE VGV
Sbjct: 779 LTEPGTLFKNLMALLRDVVICYDGTVRNVCSKSIIQLNYMEDDALDFPSAIGP-GEPVGV 837
Query: 839 LAATAMSNPAYKAVLDASPSSNCSWELMKEILLCKVHFRNEPIDRRVILYLNDC------ 892
LAATA+SNPAYKAVLDAS S+N SWE MKEIL ++N+ DR+VIL+LNDC
Sbjct: 838 LAATAISNPAYKAVLDASQSNNTSWERMKEILQTTSRYKNDMKDRKVILFLNDCSCAKKF 897
Query: 893 -------------------DCGRSYCRENAAYAV-----------KNQLRKVSLKDTA-- 920
DC C E+ +A + ++ V + A
Sbjct: 898 CKEKAAIAVQGCLRRITLEDCATDICIEDGNWAAPAGFQHPVPPPQCKILPVPIPIPAHG 957
Query: 921 -VDF----------------IVEYQQQRKRKG-SEIDAGLVGHIHLDEVKLEELKINMAE 962
V F +V YQ+Q G SE LVGHIHLD LE + I+ +
Sbjct: 958 SVKFPPVPIPAPEHLKYNIHVVRYQKQIGLDGTSEAAPALVGHIHLDRAHLERINISTED 1017
Query: 963 VFQRCQEKLDSFNRKRKF------NQIFKRTELFFSESCVSPNFSA-PCLTFIWPAGDGN 1015
+ Q+CQE + +K+ N F + F++ V PCL F D
Sbjct: 1018 ILQKCQEVSGKYGKKKGHLSNLFKNITFSTCDCSFTQKLVDGKLPKLPCLQFF--VSDNM 1075
Query: 1016 DLHETTK----ILADTICPALLDTIIQGDPRINSANIIWVNPDTNTWVRNPSKSSNGELA 1071
+ E+ + +LAD++C LL+TII+GDPRI A I+WV D +WV+N K+S GE A
Sbjct: 1076 IVSESVERAVSVLADSLCGVLLNTIIKGDPRIQEAKIVWVGSDATSWVKNTQKASKGEPA 1135
Query: 1072 LDIILEKESIKQNGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQIQELLGISCTFDQAIQR 1131
++II+E+E GDAWR +D+C+PVL+LID RRSIPY I+Q++ELLGISC FDQ +QR
Sbjct: 1136 VEIIVEEEEALHIGDAWRTTMDACIPVLNLIDIRRSIPYGIQQVRELLGISCAFDQVVQR 1195
Query: 1132 LAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDATLFTPK 1191
L+ +V+MVAK VL++HL+L+A+SMT GNL GFN GYKA R L +QVPFT++TL TP
Sbjct: 1196 LSTTVRMVAKDVLKDHLVLVANSMTFTGNLNGFNNAGYKATFRSLKVQVPFTESTLITPM 1255
Query: 1192 RCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSKFDVLWDAKEIKSNDLDGMDVYNFLH 1251
+CFE+AAEKCH+DSL +V+SCSWGK A GTGS F +LW+ ++KSN G +Y++L
Sbjct: 1256 KCFEKAAEKCHSDSLGCVVSSCSWGKHAASGTGSSFQILWNESQLKSNKEYGDGLYDYLA 1315
Query: 1252 MVKSLTNGEEENNACXXXXXXXXXXXXNADYSLSPQHTSGV-DAVFEETFEAMNGPESNG 1310
+V++ EE+ AD LSP+ + +F++ E + ++
Sbjct: 1316 LVRT---DEEKARYTFFDDVDYLAEENEADVCLSPELDGTIGQPIFDDNLEEQDVQNNSS 1372
Query: 1311 WGSNTDRTETNSTQWSAWESNKAETKDGGSQRVHEDSWTSRD--VMKDDSQMTNAWD--G 1366
W + T T ++WE N + D D+ D V K Q + WD
Sbjct: 1373 WDNGT-------TTNASWEQNGSAGNDSDKWGGWNDAAAGADTGVTKPADQGNSCWDVPA 1425
Query: 1367 NVEQTKTISNDWTAWGKNKSEIQDNVAEKAEGECGSSEKWKTAVIQEGSSKSNAWKSNIE 1426
VE++ S+DW WG K++ ++ ++E E + W + + +WK
Sbjct: 1426 TVEKS---SSDWGGWGTEKAKEKEKISE----EPAQHDAWSVQGPKRATDGGASWKKQSS 1478
Query: 1427 QRSDEDSWTSQKLKADVIQDSSKPSSWGAKPKSNDSSNWGRNKDEIQDVVSRRAEDDSWS 1486
++D +SW K + S SW + + +WGR DE ++ + ++ SW
Sbjct: 1479 TQNDGNSWKENKGRG------SNGGSW--EKDNAQKGSWGRGNDEAEN--NNDVQNKSWE 1528
Query: 1487 SKKQLSSDATQEDSSKFSFWGGNKDTTKPKSNDWSS 1522
+ +++DA +S WG T P N WS+
Sbjct: 1529 T---VAADA---HASTEKSWGNV--TASPSDNAWSA 1556
>B9GWX9_POPTR (tr|B9GWX9) DNA-directed RNA polymerase OS=Populus trichocarpa
GN=NRPD903 PE=3 SV=1
Length = 924
Score = 1238 bits (3202), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 595/927 (64%), Positives = 717/927 (77%), Gaps = 4/927 (0%)
Query: 1 MEENPTLSFLDGNVVGIQFGMATRQEICTXXXXXXXXXXXXXXXNPFLGLPLEYGRCESC 60
M+EN S DG + GI+FG+AT++EICT NPFLGLPLE+G+CESC
Sbjct: 1 MDENSQSSIFDGEITGIRFGLATQKEICTASISDCPISHSSQLTNPFLGLPLEFGKCESC 60
Query: 61 GTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKMKKTKFPSSSSGLAQRL 120
GTSE GKCEGHFG+I LP+PIYHPSH+SELK+MLSL+CL CLK+K+ K S+G+A+RL
Sbjct: 61 GTSEPGKCEGHFGFIHLPIPIYHPSHISELKRMLSLICLKCLKLKRNKIQIKSNGVAERL 120
Query: 121 LSPCCQEPNAAQVSIREVKTGDGACYLVLKV-SKSKMQDGFWRFLDKYGYRYEVDHTRAL 179
LS CC+E AQ+SIREVK DGAC+L LK+ S+S+++DG W FL++YG+RY D TR L
Sbjct: 121 LS-CCEE--CAQISIREVKNTDGACFLELKLPSRSRLRDGCWNFLERYGFRYGDDFTRPL 177
Query: 180 LPCEVMEMIKRFPLETKKKLAGKGYFPQDGYVIKYLPVPPNCLXXXXXXXXXXXXXXXXX 239
LPCEVM+++KR P ET+KKL+GKGYFPQDGY+++ LPVPPNCL
Sbjct: 178 LPCEVMQILKRIPAETRKKLSGKGYFPQDGYILQQLPVPPNCLSVPVVSDGITVMSSDLS 237
Query: 240 XTFLRKLLRKVEVIRSSRSGEPNFESHQVEANDLQSVVDQYLQIRGCAKPARDIETHFGV 299
+ L+K+L++ EVIRSSRSG PNF++H+ EA LQS+VDQYLQ+RG K +RD++T +GV
Sbjct: 238 ISMLKKVLKQAEVIRSSRSGAPNFDAHKDEATSLQSMVDQYLQVRGTTKTSRDVDTRYGV 297
Query: 300 NKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERV 359
KE S+++ KAWL+KM++LFI KGSGFSSRSVITGD Y +N+VGIP+EIAQRITFEERV
Sbjct: 298 KKESSESTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYTLVNQVGIPYEIAQRITFEERV 357
Query: 360 NSHNMCYLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRP 419
+ HNM YLQ+LVD LCL YK+G STYSLREGSKGHT+L+PGQ+VHRRIMDGDIVFINRP
Sbjct: 358 SVHNMRYLQELVDNKLCLTYKDGSSTYSLREGSKGHTFLRPGQVVHRRIMDGDIVFINRP 417
Query: 420 PTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSV 479
PTTHKHSLQAL VY+HDDH VKINPLICGPL ADFDGDCVHLFYPQSLAAKAEV+ELFSV
Sbjct: 418 PTTHKHSLQALSVYVHDDHAVKINPLICGPLSADFDGDCVHLFYPQSLAAKAEVLELFSV 477
Query: 480 EKQLLSSHXXXXXXXXXXXXXXXXXXXVKKGFMDRAAANQMAMFLSLPLPQPALLKAGSG 539
EKQLLSSH K F+ ++AA Q+AMF+S LPQPALLK
Sbjct: 478 EKQLLSSHSGNLNLQLTTDSLLSLKMMFKACFLGKSAAQQLAMFISPYLPQPALLKVNCF 537
Query: 540 DCYWTSTQILQCALPLSFDCTGGRYLIRESDILGFDLGRDVLPAVINEIAASVFFGKGPQ 599
+WT+ QILQ ALP F+C+G R+LI S+ L D RDV+ +VINEI S+FF KG
Sbjct: 538 FPHWTAHQILQMALPACFNCSGERFLIINSNFLKVDFNRDVVASVINEILISMFFEKGSG 597
Query: 600 EALNFFDVLQPFLMECIFSNGFSVGLHDFSISGAVKRITDRNIGKVSPLLYQLRFIYNEL 659
L FF+ LQP LME +FS GFSV L DFSIS AVK+ + +SPLL LR +NEL
Sbjct: 598 AVLKFFNSLQPMLMENLFSEGFSVSLEDFSISRAVKQRIPESFKAISPLLCNLRSTFNEL 657
Query: 660 VAQQLEKHMQDIELPAIKFASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYS 719
V Q+E H++D++ P +F SS LG +IDSKS +A+ KV QQIGFLG Q+ RG+LYS
Sbjct: 658 VELQVENHIRDVKQPVREFILTSSALGYLIDSKSDAAVTKVVQQIGFLGLQVSDRGKLYS 717
Query: 720 KGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRG 779
K L+ED+ASHF K + YPSA+YGL++ FFHGLD +EE+ HSISTRE++VRSSRG
Sbjct: 718 KTLVEDLASHFLSKYPANLFDYPSAQYGLIQNSFFHGLDAYEEMAHSISTREVIVRSSRG 777
Query: 780 LSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGLKAGDNASYLFPAGEHVGVL 839
LSEPGTLFKNLMAILRDVV+CYDGTVRNV SNSIIQFEYG+K G + LFPAGE VGVL
Sbjct: 778 LSEPGTLFKNLMAILRDVVICYDGTVRNVSSNSIIQFEYGVKVGTESQSLFPAGEPVGVL 837
Query: 840 AATAMSNPAYKAVLDASPSSNCSWELMKEILLCKVHFRNEPIDRRVILYLNDCDCGRSYC 899
AATAMSNPAYKAVLD++PSSNCSW++MKEILLCKV F+N+ DRRVILYLNDC CGR+YC
Sbjct: 838 AATAMSNPAYKAVLDSTPSSNCSWDMMKEILLCKVGFKNDLADRRVILYLNDCGCGRNYC 897
Query: 900 RENAAYAVKNQLRKVSLKDTAVDFIVE 926
+E AAY VKN L KVSLKD A F++E
Sbjct: 898 QERAAYLVKNHLEKVSLKDIAKCFMIE 924
>M0SC38_MUSAM (tr|M0SC38) DNA-directed RNA polymerase OS=Musa acuminata subsp.
malaccensis PE=3 SV=1
Length = 1433
Score = 1190 bits (3078), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 637/1419 (44%), Positives = 882/1419 (62%), Gaps = 100/1419 (7%)
Query: 212 IKYLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEVIRSSRSGEPNFESHQVEAN 271
++ LPVPPNCL + L+K+L K+E+I+ SRSG P+FES++VE N
Sbjct: 1 MERLPVPPNCLCVPEISDGKCVMSSDISKSLLKKILGKIELIKRSRSGSPSFESYEVETN 60
Query: 272 DLQSVVDQYLQIRGCAKPARDIETHFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSV 331
DLQS + Y+ +RG K RDI F E ++ K WLDK+++LFI KGSGFSSRSV
Sbjct: 61 DLQSSIALYMNLRGTTKAPRDITRRFAFGNETNEYLTKQWLDKIRTLFIRKGSGFSSRSV 120
Query: 332 ITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLVDENLCLAYKEGVSTYSLREG 391
I+GD Y IN VG+P EIA+RITFEERV HN+ LQ +VD LC+ YK+G STY++ G
Sbjct: 121 ISGDPYIGINVVGLPSEIAKRITFEERVTEHNITRLQNVVDSRLCITYKDGSSTYAISVG 180
Query: 392 SKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLG 451
SKGHT LK GQ+++R+I+DGDIVFINRPP+THKHSLQA VYIHDDHTVKINPLIC PLG
Sbjct: 181 SKGHTNLKIGQVINRQILDGDIVFINRPPSTHKHSLQAFYVYIHDDHTVKINPLICAPLG 240
Query: 452 ADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKKGF 511
ADFDGDCVH+FYPQSL+AKAEV+ELFSVEKQLLSSH K GF
Sbjct: 241 ADFDGDCVHIFYPQSLSAKAEVLELFSVEKQLLSSHSGSLNLQLVQDASLALKLIFKSGF 300
Query: 512 MDRAAANQMAMFLSLPLPQPALLKAGSGDCYWTSTQILQCALPLSFDCTGGRYLIRESDI 571
+ + A Q+ M++S LP PA++KA WT Q+LQ P DC+G RY IRES+I
Sbjct: 301 IKKEVAQQLGMYVSSMLPPPAIVKATKCGPCWTILQVLQNVFPAFLDCSGERYFIRESEI 360
Query: 572 LGFDLGRDVLPAVINEIAASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHDFSIS 631
L D +DV+ +++ +I ++ KGP E LNFF+ +QP LME +F GFS+ L DF +S
Sbjct: 361 LELDTDQDVVQSLLTDIMTHIYHMKGPMEVLNFFNYIQPLLMEMLFMEGFSICLKDFILS 420
Query: 632 GAVKRITDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQDIELPAIKFASKSSRLGDMIDS 691
AV +I K S +L QLR +E Q++ H++ ++ P +KF SS LG++IDS
Sbjct: 421 KAVVSEIQGSIQKNSCILNQLRSRRDERAELQVQNHLRSMKDPIVKFILNSSALGNLIDS 480
Query: 692 KSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKG 751
KS S++ KV +Q+GFLG QLF +G+ YS+ L++D +F K +PS YGL+K
Sbjct: 481 KSDSSMVKVVEQLGFLGLQLFDQGKYYSRALVDDCFLNFVSKHSAGEVDHPSEAYGLVKN 540
Query: 752 CFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSN 811
FFHGL+P+E LVH+IS+RE++VRSSRGL+EPGTLFKNLMAILRDVV+CYDG+VRNVC+
Sbjct: 541 SFFHGLNPYEMLVHAISSREVIVRSSRGLTEPGTLFKNLMAILRDVVICYDGSVRNVCTG 600
Query: 812 SIIQFEYGLKAGDNASYLFPAGEHVGVLAATAMSNPAYKAVLDASPSSNCSWELMKEILL 871
S++Q EY G N+ PAG+ VGVLAATA+SN AYKAVLD+S S+N SWELMKEILL
Sbjct: 601 SLVQLEYVDDEGVNSVNTPPAGDPVGVLAATAISNLAYKAVLDSSQSNNSSWELMKEILL 660
Query: 872 CKVHFRNEPIDRRVILYLNDCDCGRSYCRENAAYAVKNQLRKVSLKDTAVDFIVEYQQQR 931
CKV ++N+ DRRVILYLNDC C + +C+ENAA+ V N L++V+LKD A +F++EYQ+Q
Sbjct: 661 CKVSYKNDVSDRRVILYLNDCCCQKRFCKENAAFTVLNCLKRVTLKDCAHEFLIEYQKQI 720
Query: 932 KRKGSEI-DAGLVGHIHLDEVKLEELKINMAEVFQRCQEKLDSFNRKR-KFNQIFKRTEL 989
S + +GLVGHIHLD+++L+ L IN ++ +CQ + S+ +K+ + + F+R L
Sbjct: 721 GVCDSSVTTSGLVGHIHLDKMQLKLLNINPDDILHKCQAVIFSYGKKKGQLSHFFRRIFL 780
Query: 990 FFSESCVSPNFS------APCLTFIWPAGDGND----LHETTKILADTICPALLDTIIQG 1039
+ C S PCL F + + + L ++++TICP LLDTI++G
Sbjct: 781 STCKCCSIKQPSDGNLCHLPCLQFSYADANASQNNISLERAIHVMSETICPILLDTIVKG 840
Query: 1040 DPRINSANIIWVNPDTNTWVRNPSKSSNGELALDIILEKESIKQNGDAWRIVLDSCLPVL 1099
DPR++ I+W+ PD +WV + K+ G+L L+++L +++++Q+GDAWR VLD+CLPV+
Sbjct: 841 DPRVHEVKIVWIGPDATSWVGSSCKTLKGDLGLEVVLGQDAVRQSGDAWRTVLDACLPVM 900
Query: 1100 HLIDTRRSIPYAIKQIQELLGISCTFDQAIQRLAASVKMVAKGVLREHLILLASSMTCGG 1159
HLIDT RSIPY I+QIQE+LGISC FDQA+QRL+ S+KMV+KGV++EHL+L+A+SMTC G
Sbjct: 901 HLIDTGRSIPYGIQQIQEVLGISCAFDQAVQRLSKSIKMVSKGVMKEHLLLVANSMTCTG 960
Query: 1160 NLVGFNTGGYKALARQLNIQVPFTDATLFTPKRCFERAAEKCHTDSLSSIVASCSWGKPV 1219
L+GFNTGGYKAL R ++VPFT ATLFTP +CFERAAEKC DSL+S+V+SCSWGK V
Sbjct: 961 KLIGFNTGGYKALFRSFKVEVPFTAATLFTPMKCFERAAEKCQVDSLASVVSSCSWGKNV 1020
Query: 1220 AVGTGSKFDVLWDAKEIKSNDLDGMDVYNFLHMVKSLTNGE-------------EENNAC 1266
A+GTG+ F +LWD K++ N G VY+FL +++ ++GE EEN C
Sbjct: 1021 AIGTGAPFQILWDKKQMAMNKDIGKGVYDFLELLRETSSGEATGRYLADVDELAEENGIC 1080
Query: 1267 XXXXXXXXXXXXNADYSLSPQHTSGVDAVFEETFEAMNG----------PES------NG 1310
+ D ++ + V+ F++ +NG P S G
Sbjct: 1081 ---------LSPDLDGCMTFDDSDDVEYNFQKRIGVVNGKSGESSWEVDPVSVKSGNWEG 1131
Query: 1311 WG----SNTDRTETNSTQ---WSAWESNKAETKDGGSQRVHEDSWTSRDVMKDDSQMTNA 1363
WG ++ D E+ +T+ WS+W+S + + K S+ + D+ D+
Sbjct: 1132 WGDKESTHVDNCESPATKHNVWSSWDSIQVKQKTVESENLAGDTVPGEDM---------- 1181
Query: 1364 WDGNVEQTKTISNDWTAWGKNKSEIQDNVAEKAEGECGSSEKWKTAV-IQEGSSKSNAWK 1422
+ ++ +++ AWGK K++ +K +E KT V ++EGS N
Sbjct: 1182 ---DAQKHSGTADESVAWGKWKADGNSTARDKLSHRNCWNEASKTKVDLKEGSPVWNRTA 1238
Query: 1423 SNIEQRSDEDSWTSQKLKADVIQDSSKPSSWGAKPKSNDSSNWGRNKDEIQDVVSRRAED 1482
S+ + + ++DS S P +W ++ + WG++ + R
Sbjct: 1239 SSPKSKHNQDSLF------------STPGTWSSQ---SSGKPWGQDN---ANNTKRNIAQ 1280
Query: 1483 DSWSSKKQ-----LSSDATQEDSSKFSFWGGNKDTTKPKSNDWSSWGGNRDGIQDGGSKR 1537
D W + S +T+ + S W GN P N W GN D +D S+
Sbjct: 1281 DGWRCAESPVTNIWDSTSTRNANVSDSQWSGN-----PSKNLDIQWDGN-DSNKDLDSQW 1334
Query: 1538 AQDDSWSSQKDVTRESSSKVDAWGANNEASNPKSNDWSA 1576
+ + +S R S WG+ N +SA
Sbjct: 1335 CGNVTSTSNTSEGRNQSWNSRGWGSANPPGRKNQKTFSA 1373
>M0WRB9_HORVD (tr|M0WRB9) DNA-directed RNA polymerase OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 1139
Score = 1107 bits (2862), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 558/1144 (48%), Positives = 758/1144 (66%), Gaps = 19/1144 (1%)
Query: 1 MEENPTLSFL--DGNVVGIQFGMATRQEICTXXXXXXXXXXXXXXXNPFLGLPLEYGRCE 58
MEE S L +G + I+ ++T EICT NPFLGLPLE G+CE
Sbjct: 1 MEEEDQSSVLVAEGAIKSIKLSLSTENEICTYSINDCPVTHPSQLGNPFLGLPLETGKCE 60
Query: 59 SCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKMKKTKFPSSSSGLAQ 118
SCG +E GKCEGHFG+IELPVP+YHP HVSEL+++LS+VCL CL++KK K ++G
Sbjct: 61 SCGATENGKCEGHFGFIELPVPVYHPCHVSELRQLLSMVCLQCLRIKKGKV-KQTNGKEN 119
Query: 119 RLLSPCCQEPNAAQVSIREVKTGDGACYLVLKVS-KSKMQDGFWRFLDKYGYRYE-VDHT 176
++ C + ++E+KT DGA L L+ K M + W FL KYG+RY H+
Sbjct: 120 FSVTACHYCRGLPALYLKEIKTADGAFRLELRAPPKKHMTERSWDFLGKYGFRYGGASHS 179
Query: 177 RALLPCEVMEMIKRFPLETKKKLAGKGYFPQDGYVIKYLPVPPNCLXXXXXXXXXXXXXX 236
R LLP E + ++K+ P +TKKKLA +GY Q GYV+KYLPVPPNCL
Sbjct: 180 RTLLPEEALNILKKIPDDTKKKLAARGYIAQPGYVMKYLPVPPNCLYIPEFTDGQSIMSY 239
Query: 237 XXXXTFLRKLLRKVEVIRSSRSGEPNFESHQVEANDLQSVVDQYLQIRGCAKPARDIETH 296
+ L+K+L+K+E I+ SRSG PNFES+ E+ DLQ + QY+Q+RG K +D +
Sbjct: 240 DISISLLKKILQKIEQIKKSRSGSPNFESNDSESTDLQLSIGQYIQLRGTTKGPQDAK-R 298
Query: 297 FGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFE 356
F V+ + S S K WL+KM++LFISKGSGFSSRSV+TGD Y + VG+P E+A+RITFE
Sbjct: 299 FSVSTDSSHLSTKQWLEKMRTLFISKGSGFSSRSVLTGDPYIGADVVGLPSEVAKRITFE 358
Query: 357 ERVNSHNMCYLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFI 416
E+V N+ LQ++VD+ LCL Y++G +TY++ GSKG+T LK GQ + RRI+DGD+VF+
Sbjct: 359 EQVTDTNLNRLQEVVDKGLCLTYRDGQTTYAITVGSKGYTTLKVGQTISRRIVDGDVVFL 418
Query: 417 NRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVEL 476
NRPP+THKHSLQA VYIHDDHTVKINPLIC PL ADFDGDCVH++YPQSLAAKAE +EL
Sbjct: 419 NRPPSTHKHSLQAFTVYIHDDHTVKINPLICSPLAADFDGDCVHIYYPQSLAAKAEALEL 478
Query: 477 FSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKKGFMDRAAANQMAMFLSLPLPQPALLKA 536
FSVEKQL +SH + + + +ANQ+AM LSL LP PA++K
Sbjct: 479 FSVEKQLTNSHNGKVNLQLANDSLLALKHMSSRTMLSKESANQLAMLLSLSLPAPAVVK- 537
Query: 537 GSGDCYWTSTQILQCALPLSFDCTGGRYLIRESDILGFDLGRDVLPAVINEIAASVFFGK 596
S C WT TQI+Q ALP C G R+L+R+S ++ DL ++ + A +E+ +S+ K
Sbjct: 538 -SKPC-WTITQIMQSALPAELTCEGDRFLVRDSTVIKLDLDKESIQASFSELVSSILAVK 595
Query: 597 GPQEALNFFDVLQPFLMECIFSNGFSVGLHDFSISGAVKRITDRNIGKVSPLLYQLRFIY 656
GP +AL F + LQPFLME + +GFSV L DFS+ + I K S +L Q R
Sbjct: 596 GPGDALKFLNALQPFLMEFLLLDGFSVSLQDFSVPKPLLEEAQECIKKQSLVLEQSRCSN 655
Query: 657 NELVAQQLEKHMQDIELPAIKFASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGR 716
++ V +++ +++D++ F KSSRLG +ID KS ++ KV QQ+ F+G QL+ G+
Sbjct: 656 SQSVEVRVDNNLKDVKQQIADFVVKSSRLGLLIDPKSDPSVSKVVQQLAFVGPQLYREGK 715
Query: 717 LYSKGLLEDVASHF--KLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMV 774
YS+ L++D S F + DG +P YGL++ +FHGL+P+EELVHSI TRE +V
Sbjct: 716 FYSRRLVDDCFSSFVNRHPPIEDGVQHPPEAYGLVQSAYFHGLNPYEELVHSICTRETIV 775
Query: 775 RSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGLKAGDNASYLFPAGE 834
RSSRGL+EPGTLFK+LMAILRDVV+CYDGTVRN+CSNSI+Q +Y + + GE
Sbjct: 776 RSSRGLTEPGTLFKSLMAILRDVVICYDGTVRNICSNSIMQLKYKEEDDTDFPSAIAPGE 835
Query: 835 HVGVLAATAMSNPAYKAVLDASPSSNCSWELMKEILLCKVHFRNEPIDRRVILYLNDCDC 894
VGVLAATA+SNPAYKAVLDAS S+N SWELMKEIL KV ++N+ DR+VIL+LNDC C
Sbjct: 836 PVGVLAATAISNPAYKAVLDASQSNNTSWELMKEILKTKVSYKNDAKDRKVILFLNDCSC 895
Query: 895 GRSYCRENAAYAVKNQLRKVSLKDTAVDFIVEYQQQRKRKG-SEIDAGLVGHIHLDEVKL 953
+ +C+E AA AV+ L++V+L+D A D +EY +Q SE VGHIHL++ L
Sbjct: 896 PKKFCKEKAAIAVQGCLKRVTLEDCATDICIEYHKQVSLAATSEAIPAFVGHIHLEKAYL 955
Query: 954 EELKINMAEVFQRCQEKLDSF-NRKRKFNQIFKRTELFFSESCVSP---NFSAPCLTFIW 1009
E++ +++ E+ +CQE N+K +FK+ + + + PCL F +
Sbjct: 956 EKINVSIDEILHKCQEVSGKHANKKGTLGHLFKKITFSTCDCSFTQKPGDEKVPCLQFSF 1015
Query: 1010 PAGD---GNDLHETTKILADTICPALLDTIIQGDPRINSANIIWVNPDTNTWVRNPSKSS 1066
+ + + +LAD++C LL+ II+GDPR+ A I WV D +WV++ K S
Sbjct: 1016 SEDIPMLSDSVEKAVNVLADSLCSVLLEIIIKGDPRVQEAKITWVGSDATSWVKHTKKIS 1075
Query: 1067 NGELALDIILEKESIKQNGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQIQELLGISCTFD 1126
GE A++II+EK+ QNGDAWRI +D+C+PV++LIDT+RSIPY I+Q++ELLGISC+FD
Sbjct: 1076 KGEPAVEIIVEKKEAMQNGDAWRIAMDACIPVMNLIDTQRSIPYGIQQVRELLGISCSFD 1135
Query: 1127 QAIQ 1130
Q +Q
Sbjct: 1136 QVVQ 1139
>B9GM06_POPTR (tr|B9GM06) DNA-directed RNA polymerase OS=Populus trichocarpa
GN=NRPD902 PE=3 SV=1
Length = 842
Score = 1063 bits (2748), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 539/927 (58%), Positives = 661/927 (71%), Gaps = 86/927 (9%)
Query: 1 MEENPTLSFLDGNVVGIQFGMATRQEICTXXXXXXXXXXXXXXXNPFLGLPLEYGRCESC 60
M+E P S +G + GI+FG+A+++EI +
Sbjct: 1 MDEIPQSSIFEGEITGIRFGLASQKEIVS------------------------------- 29
Query: 61 GTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKMKKTKFPSSSSGLAQRL 120
HFGYI+LPVPIYHPSH+SELK+MLSL+CL CLK+K+ K S+G+A+RL
Sbjct: 30 ----------HFGYIDLPVPIYHPSHISELKRMLSLLCLKCLKLKRNKIQIKSNGVAERL 79
Query: 121 LSPCCQEPNAAQVSIREVKTGDGACYLVLKV-SKSKMQDGFWRFLDKYGYRYEVDHTRAL 179
LS CC+E AQ+SIREVK DGAC+L LK+ S+S+++DG
Sbjct: 80 LS-CCEE--CAQISIREVKNTDGACFLELKLPSRSRLRDG-------------------- 116
Query: 180 LPCEVMEMIKRFPLETKKKLAGKGYFPQDGYVIKYLPVPPNCLXXXXXXXXXXXXXXXXX 239
GKGYFPQDGY+++ LPVPPNCL
Sbjct: 117 ---------------------GKGYFPQDGYILQQLPVPPNCLSVPAVSDGISIMSSDLS 155
Query: 240 XTFLRKLLRKVEVIRSSRSGEPNFESHQVEANDLQSVVDQYLQIRGCAKPARDIETHFGV 299
+ L+K+L++VEVI+SSRSG PNF++H+ EAN LQS+VD+YLQ+RG K +RD++ +GV
Sbjct: 156 ISILKKVLKQVEVIKSSRSGAPNFDAHKDEANSLQSMVDRYLQVRGTTKTSRDVDVRYGV 215
Query: 300 NKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERV 359
K+ S++S KAWL+KM++LFI KGSGFSSRSVITGD Y ++N+VGIP+EIAQRITFEERV
Sbjct: 216 KKDSSESSTKAWLEKMRTLFIRKGSGFSSRSVITGDAYTKVNQVGIPYEIAQRITFEERV 275
Query: 360 NSHNMCYLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRP 419
+ HNM YLQ+LVD LCL Y++G STYSLREGSKGHT+L+PGQ+VHRRI+DGD+VFINRP
Sbjct: 276 SVHNMRYLQELVDNKLCLTYRDGSSTYSLREGSKGHTFLRPGQVVHRRIIDGDVVFINRP 335
Query: 420 PTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSV 479
PTTHKHSLQAL VY+HDDHTVKINPLICGPL ADFDGDCVHLFYPQSLAAKAEV+ELFSV
Sbjct: 336 PTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCVHLFYPQSLAAKAEVLELFSV 395
Query: 480 EKQLLSSHXXXXXXXXXXXXXXXXXXXVKKGFMDRAAANQMAMFLSLPLPQPALLKAGSG 539
EKQLLSSH K F+D++AA Q+AMF+S LPQPALLK
Sbjct: 396 EKQLLSSHSGNLNLQLTTDSLLSLKMIFKACFLDKSAAQQLAMFVSPDLPQPALLKVNCI 455
Query: 540 DCYWTSTQILQCALPLSFDCTGGRYLIRESDILGFDLGRDVLPAVINEIAASVFFGKGPQ 599
YWT+ QILQ ALP F+C+G R+LI S++L D RDV+ ++INEI S+FF KG
Sbjct: 456 RPYWTAHQILQMALPTCFNCSGERFLINNSNVLKVDFNRDVVASMINEILISIFFEKGSG 515
Query: 600 EALNFFDVLQPFLMECIFSNGFSVGLHDFSISGAVKRITDRNIGKVSPLLYQLRFIYNEL 659
L FF+ LQP LME +FS GFSV L DFSIS AVK+ + +SPLL LR YNEL
Sbjct: 516 AVLKFFNALQPLLMENLFSEGFSVSLKDFSISQAVKQSIQESFKVISPLLCNLRSTYNEL 575
Query: 660 VAQQLEKHMQDIELPAIKFASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYS 719
V Q+E H+QD++ P ++F SS LG +IDSKS A+ K+ QQIGFLG Q+ RG+LYS
Sbjct: 576 VELQVENHIQDVKTPVLEFILTSSALGYLIDSKSDGAVAKLVQQIGFLGLQVSDRGKLYS 635
Query: 720 KGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRG 779
K L+ED+ASHF+ K + YPSA+YGL++ FFHGLD +EE+ HSISTRE++VRSSRG
Sbjct: 636 KTLVEDLASHFQSKYPTNLLNYPSAQYGLIQSSFFHGLDAYEEMAHSISTREVIVRSSRG 695
Query: 780 LSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGLKAGDNASYLFPAGEHVGVL 839
LSEPGTLFKNLMAILRDVV+CYDGTVRNVCSNSIIQ EYG+K G + LFPAGE VGVL
Sbjct: 696 LSEPGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQSEYGVKVGAESQSLFPAGEPVGVL 755
Query: 840 AATAMSNPAYKAVLDASPSSNCSWELMKEILLCKVHFRNEPIDRRVILYLNDCDCGRSYC 899
AATAMSNPAYKAVLD++PSSN SW++MKEILLCKV F+N+ DRRVILY N C CGR +C
Sbjct: 756 AATAMSNPAYKAVLDSTPSSNSSWDMMKEILLCKVGFKNDQADRRVILYFNYCGCGREHC 815
Query: 900 RENAAYAVKNQLRKVSLKDTAVDFIVE 926
+E AA+ VKN L KVSLKD A F++E
Sbjct: 816 QEKAAFLVKNHLEKVSLKDVAKCFMIE 842
>B8AHU1_ORYSI (tr|B8AHU1) DNA-directed RNA polymerase OS=Oryza sativa subsp.
indica GN=OsI_05888 PE=3 SV=1
Length = 1867
Score = 982 bits (2539), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 488/983 (49%), Positives = 656/983 (66%), Gaps = 10/983 (1%)
Query: 1 MEENPT-LSFLDGNVVGIQFGMATRQEICTXXXXXXXXXXXXXXXNPFLGLPLEYGRCES 59
MEE+ + + +G + I+ ++T EI T NPFLGLPLE G+CES
Sbjct: 1 MEEDQSAIPVAEGAIKSIKLSLSTEDEIRTYSINDCPVTHPSQLGNPFLGLPLETGKCES 60
Query: 60 CGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKMKKTKFPSSSSGLAQR 119
CG SE GKCEGHFGYIELPVPIYHP HV+EL+++L++VCL CL++KK K +
Sbjct: 61 CGASENGKCEGHFGYIELPVPIYHPCHVTELRQILNVVCLKCLRVKKGKVKQTEGKDNTS 120
Query: 120 LLSPCCQEPNAAQVSIREVKTGDGACYLVLKVSKSK-MQDGFWRFLDKYGYRYE-VDHTR 177
LS C + +S++E+KT DGA L LK+ K M +G W FLDKYG+ + H R
Sbjct: 121 ALS-CYYCRDLPALSLKEIKTADGAFRLELKMPPRKFMTEGSWNFLDKYGFHHGGTSHCR 179
Query: 178 ALLPCEVMEMIKRFPLETKKKLAGKGYFPQDGYVIKYLPVPPNCLXXXXXXXXXXXXXXX 237
LLP E + ++K+ P ETK+KLA +GY Q GYV+KYLPVPPNCL
Sbjct: 180 TLLPEEALNILKKIPEETKRKLAARGYIAQSGYVMKYLPVPPNCLYIPEFTDGQSIMSYD 239
Query: 238 XXXTFLRKLLRKVEVIRSSRSGEPNFESHQVEANDLQSVVDQYLQIRGCAKPARDIETHF 297
+ L+K+L+K+E I+ SR+G PNFESH+VE+ DLQ + QY+ +RG + +D F
Sbjct: 240 ISISLLKKVLQKIEQIKKSRAGSPNFESHEVESCDLQLSIAQYIHLRGTTRGPQDNTKRF 299
Query: 298 GVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEE 357
++ + S S K WL+KM++LFISKGSGFSSRSV+TGD Y ++ +G+P E+A+RITFEE
Sbjct: 300 AISTDPSALSTKQWLEKMRTLFISKGSGFSSRSVLTGDPYIGVDVIGLPSEVAKRITFEE 359
Query: 358 RVNSHNMCYLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFIN 417
+V N+ LQ++VD+ LCL Y++G +TY++ GSKGHT LK GQ + RRI+DGD+VF+N
Sbjct: 360 QVTDINLNRLQEIVDKGLCLTYRDGQATYAITVGSKGHTTLKVGQTISRRIVDGDVVFLN 419
Query: 418 RPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELF 477
RPP+THKHSLQA VY+H+DHTVKINPLIC P ADFDGDCVH++YPQSLAAKAE +ELF
Sbjct: 420 RPPSTHKHSLQAFRVYVHEDHTVKINPLICAPFAADFDGDCVHIYYPQSLAAKAEALELF 479
Query: 478 SVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKKGFMDRAAANQMAMFLSLPLPQPALLKAG 537
SVEKQL SSH + + + AANQ+AM ++ LP PA++K+
Sbjct: 480 SVEKQLTSSHSGKVNLQLVSDSLLALKHMSSRTMLSKEAANQLAMLVTCSLPDPAVIKSK 539
Query: 538 SGDCYWTSTQILQCALPLSFDCTGGRYLIRESDILGFDLGRDVLPAVINEIAASVFFGKG 597
YWT +QI+Q ALP + G ++++R+S I+ DL ++ + +++ S KG
Sbjct: 540 P---YWTISQIVQGALPKALTSQGDKHVVRDSTIIKLDLDKESVQTSFSDLVYSTLSVKG 596
Query: 598 PQEALNFFDVLQPFLMECIFSNGFSVGLHDFSISGAVKRITDRNIGKVSPLLYQLRFIYN 657
P EAL F +VLQP LME I +GFSV L DF++ + +NI K S +L Q RF N
Sbjct: 597 PGEALQFLNVLQPLLMELILLDGFSVSLQDFNVPKVLLEEAQKNIEKQSLILEQSRFAEN 656
Query: 658 ELVAQQLEKHMQDIELPAIKFASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRL 717
++V +++ +++DI+ F K S LG +ID KS S++ KV QQ+GF+G QL+ G+
Sbjct: 657 QVVEMRVDNNLKDIKQQISDFVVKRSHLGLLIDPKSDSSVSKVVQQLGFVGLQLYREGKF 716
Query: 718 YSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSS 777
YS+ L+ED F K + + YGL++ +FHGL+P+EELVH+ISTRE +VRSS
Sbjct: 717 YSRRLVEDCYYTFVNKHPAVREEHSPEAYGLVRSSYFHGLNPYEELVHAISTREAIVRSS 776
Query: 778 RGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGL-KAGDNASYLFPAGEHV 836
RGL+EPGTLFKNLMA+LRDVV+CYDGTVRNVCS SIIQ Y A D S + P GE V
Sbjct: 777 RGLTEPGTLFKNLMALLRDVVICYDGTVRNVCSKSIIQLNYTEDDALDFPSAIGP-GEPV 835
Query: 837 GVLAATAMSNPAYKAVLDASPSSNCSWELMKEILLCKVHFRNEPIDRRVILYLNDCDCGR 896
GVLAATA+SNPAYKAVLDAS S+N SWE MKEIL ++N+ DR+VIL+LNDC C +
Sbjct: 836 GVLAATAISNPAYKAVLDASQSNNTSWERMKEILQTTSRYKNDMKDRKVILFLNDCSCAK 895
Query: 897 SYCRENAAYAVKNQLRKVSLKDTAVDFIVEYQQQRKRKG-SEIDAGLVGHIHLDEVKLEE 955
+C+E AA AV+ LR+++L+D A D +EYQ+Q G SE LVGHIHLD LE
Sbjct: 896 KFCKEKAAIAVQGCLRRITLEDCATDICIEYQKQIGLDGTSEAAPALVGHIHLDRAHLER 955
Query: 956 LKINMAEVFQRCQEKLDSFNRKR 978
+ I+ ++ Q+CQE + +K+
Sbjct: 956 INISTEDILQKCQEVSGKYGKKK 978
Score = 308 bits (788), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 196/542 (36%), Positives = 294/542 (54%), Gaps = 43/542 (7%)
Query: 1040 DPRINSANIIWVNPDTNTWVRNPSKSSNGELALDIILEKESIKQNGDAWRIVLDSCLPVL 1099
DPRI A I+WV D +WV+N K+S GE A++II+E+E GDAWR +D+C+PVL
Sbjct: 983 DPRIQEAKIVWVGSDATSWVKNTQKASKGEPAVEIIVEEEEALHIGDAWRTTMDACIPVL 1042
Query: 1100 HLIDTRRSIPYAIKQIQELLGISCTFDQAIQRLAASVKMVAKGVLREHLILLASSMTCGG 1159
+LID RRSIPY I+Q++ELLGISC FDQ +QRL+ +V+MVAK VL++HL+L+A+SMT G
Sbjct: 1043 NLIDIRRSIPYGIQQVRELLGISCAFDQVVQRLSTTVRMVAKDVLKDHLVLVANSMTFTG 1102
Query: 1160 NLVGFNTGGYKALARQLNIQVPFTDATLFTPKRCFERAAEKCHTDSLSSIVASCSWGKPV 1219
NL GFN GYKA R L +QVPFT++TL TP +CFE+AAEKCH+DSL +V+SCSWGK
Sbjct: 1103 NLNGFNNAGYKATFRSLKVQVPFTESTLITPMKCFEKAAEKCHSDSLGCVVSSCSWGKHA 1162
Query: 1220 AVGTGSKFDVLWDAKEIKSNDLDGMDVYNFLHMVKSLTNGEEENNACXXXXXXXXXXXXN 1279
A GTGS F +LW+ ++KSN G +Y++L +V++ EE+
Sbjct: 1163 ASGTGSSFQILWNESQLKSNKEYGDGLYDYLALVRT---DEEKARYTFFDDVDYLAEENE 1219
Query: 1280 ADYSLSPQHTSGV-DAVFEETFEAMNGPESNGWGSNTDRTETNSTQWSAWESNKAETKDG 1338
AD LSP+ + +F++ E + ++ W + T T ++WE N + D
Sbjct: 1220 ADVCLSPELDGTIGQPIFDDNLEEQDVQNNSSWDNGT-------TTNASWEQNGSAGNDS 1272
Query: 1339 GSQRVHEDSWTSRD--VMKDDSQMTNAWD--GNVEQTKTISNDWTAWGKNKSEIQDNVAE 1394
D+ D V K +Q + WD VE++ S+DW WG K++ ++ ++E
Sbjct: 1273 DKWGGWNDAAAGADTGVTKPANQGNSCWDVPATVEKS---SSDWGGWGTEKAKEKEKISE 1329
Query: 1395 KAEGECGSSEKWKTAVIQEGSSKSNAWKSNIEQRSDEDSWTSQKLKADVIQDSSKPSSWG 1454
E + W + + +WK ++D +SW K + S SW
Sbjct: 1330 ----EPAQHDAWSVQGPKRATDGGASWKKQSSTQNDGNSWKENKGRG------SNGGSW- 1378
Query: 1455 AKPKSNDSSNWGRNKDEIQDVVSRRAEDDSWSSKKQLSSDATQEDSSKFSFWGGNKDTTK 1514
+ + +WGR DE ++ + ++ SW + +++DA +S WG T
Sbjct: 1379 -EKDNAQKGSWGRGNDEAEN--NNDVQNKSWET---VAADA---HASTEKSWGNV--TAS 1427
Query: 1515 PKSNDWSSWGGNRDGIQDGGSKRAQDDSWSSQKDVTRESSSKVDAWGANNEASNPKSNDW 1574
P N WS+ ++ +G S Q DSW K + + D N ++P + W
Sbjct: 1428 PSDNAWSAAPVSQG---NGSSDTKQSDSWDGWKSAGVDKAINKDKESLGNVPASPSFSAW 1484
Query: 1575 SA 1576
+A
Sbjct: 1485 NA 1486
>Q1L5X7_SOLLC (tr|Q1L5X7) DNA-directed RNA polymerase (Fragment) OS=Solanum
lycopersicum GN=RPE1 PE=2 SV=1
Length = 1127
Score = 960 bits (2482), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 496/947 (52%), Positives = 637/947 (67%), Gaps = 25/947 (2%)
Query: 453 DFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKKGFM 512
DFDGDCVHLFYPQSL+AKAEV+ELF+V KQLLSSH F
Sbjct: 1 DFDGDCVHLFYPQSLSAKAEVLELFAVGKQLLSSHTGNFNSQLATDSLLSLKLMFSHYFF 60
Query: 513 DRAAANQMAMFLSLPLPQPALLKAGSGDCYWTSTQILQCALPLSFDCTGGRYLIRESDIL 572
D+AAA Q+AMFL + LP A++ WT+ QIL ALP FD G + I +S L
Sbjct: 61 DKAAAQQLAMFLPMALPDSAVVDVRKSGAMWTTLQILGAALPDGFDSCGETHTIGKSQFL 120
Query: 573 GFDLGRDVLPAVINEIAASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHDFSISG 632
G D RD++ +++N++ S++F KGP + L FF+ LQP LME + + GFS+ L DF ++
Sbjct: 121 GIDYHRDLISSILNDVITSIYFMKGPNDVLKFFNSLQPLLMENLCTEGFSISLRDFYMTK 180
Query: 633 AVKRITDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQDIELPAIKFASKSSRLGDMIDSK 692
AV+ I +S LL+ LR YNE V QLE H+++ +LP I F KSS +G +IDSK
Sbjct: 181 AVRDGIQERIQCMSKLLHHLRSSYNESVEVQLEHHLRNEKLPVIDFVLKSSGMGVLIDSK 240
Query: 693 SKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGC 752
S+SA +KV QQIGFLG Q+ RG+ Y L+ D+A F+ K G PS E+GL++ C
Sbjct: 241 SESAFNKVVQQIGFLGLQISDRGKFYXXTLVHDMAQLFQKKYPSVGTN-PSEEFGLVRSC 299
Query: 753 FFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNS 812
F+GLDP++ ++HSIS+RE++VRS+RGL+EPGTLF NLMAILRDVV+CYDGTVRNV SNS
Sbjct: 300 LFYGLDPYQGMIHSISSREVIVRSTRGLTEPGTLFXNLMAILRDVVICYDGTVRNVSSNS 359
Query: 813 IIQFEYGLKAGDNASYLFPAGEHVGVLAATAMSNPAYKAVLDASPSSNCSWELMKEILLC 872
IIQFEYG G N F AG+ VGVLAATAMSNPAYKA LD+SPSSN SWE+MKEILLC
Sbjct: 360 IIQFEYGSSGGSNLPSEFCAGDPVGVLAATAMSNPAYKAXLDSSPSSNSSWEMMKEILLC 419
Query: 873 KVHFRNEPIDRRVILYLNDCDCGRSYCRENAAYAVKNQLRKVSLKDTAVDFIVEYQ-QQR 931
V F+N+ DRRVILYLNDC C R YCRE AAY VKN L KV LKD A +F++EY +Q
Sbjct: 420 GVSFKNDVSDRRVILYLNDCGCRRGYCREKAAYVVKNHLSKVCLKDAADEFLIEYAGRQA 479
Query: 932 KRKGSEIDAGLVGHIHLDEVKLEELKINMAEVFQRCQEKLDSFNRKRKFNQIFKRTELFF 991
+ SE GL+GHI L++ +LE L I++ EV +RCQE + SF K+K +FKR L
Sbjct: 480 GYENSETGTGLIGHIRLNQGQLENLGISVLEVHERCQENISSFRXKKKIGNLFKRIVLSV 539
Query: 992 SESCV------SPNFSAPCLTFIWPAGDGNDLHETTKILADTICPALLDTIIQGDPRINS 1045
SE C S +APCL F WP + L + ILAD I P LLDT+I+GDPR++S
Sbjct: 540 SEFCSFCHNSGSKCLNAPCLRFSWPDASDDHLERVSHILADMIXPILLDTVIKGDPRVSS 599
Query: 1046 ANIIWVNPDTNTWVRNPSKSSNGELALDIILEKESIKQNGDAWRIVLDSCLPVLHLIDTR 1105
ANI W++PDT +W+R+PSKS GELALDI+LEKE++K GDAWR ++DSCLPV+HLIDT
Sbjct: 600 ANIAWISPDTMSWIRSPSKSQRGELALDIVLEKEAVKXRGDAWRXLMDSCLPVIHLIDTT 659
Query: 1106 RSIPYAIKQIQELLGISCTFDQAIQRLAASVKMVAKGVLREHLILLASSMTCGGNLVGFN 1165
RSIPYAIKQ+QEL+GISC F+QA+ RL+ SV MV KGVL++HL+LLA+SMTC GNLVGFN
Sbjct: 660 RSIPYAIKQVQELIGISCAFEQAVXRLSTSVTMVTKGVLKDHLVLLANSMTCAGNLVGFN 719
Query: 1166 TGGYKALARQLNIQVPFTDATLFTPKRCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGS 1225
GG KAL+R LN+Q+PFT+ATLFTP++CFERAAEKCH DSLSSIVASCSWGK VAVGTGS
Sbjct: 720 AGGIKALSRSLNVQIPFTEATLFTPRKCFERAAEKCHVDSLSSIVASCSWGKHVAVGTGS 779
Query: 1226 KFDVLWDAKEIKSNDLDGMDVYNFLHMVKSLTNGEEENNACXXXXXXXXXXXXNADYSLS 1285
+F+VL + + ++ N D DVY+FLH+V++ + E E +C + LS
Sbjct: 780 RFEVLLNTRNVEWNIPDTRDVYSFLHLVRNTSAQEVEGTSCLGAEIDELEEDEDMGLYLS 839
Query: 1286 PQHTSGVDA-VFEETFEA-------MNGPESNGWGSNTDRTETNSTQWSAWESNKAETKD 1337
P SG + FE+ E P + W + + + W +T++
Sbjct: 840 PNRDSGSEMPTFEDRAEFDYNENLDEGKPSGSAWEEASSGSVKSGGSWDM----AGKTQN 895
Query: 1338 GGSQRVHE-DSWTSRDVMKDDSQMTNAWDGNVEQTKTISNDWTAWGK 1383
G + V++ DSW+S D+ + G+ EQ S W+ WG+
Sbjct: 896 GAEEGVNQSDSWSSWGKKVDEPENNRQQSGSGEQ----SGSWSPWGR 938
>K3Y4N1_SETIT (tr|K3Y4N1) DNA-directed RNA polymerase OS=Setaria italica
GN=Si009169m.g PE=3 SV=1
Length = 1546
Score = 939 bits (2427), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 558/1458 (38%), Positives = 825/1458 (56%), Gaps = 136/1458 (9%)
Query: 45 NPFLGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKM 104
NP LGLPL+ G CESCG ++ +CEGHFG+IELP PIYHPSHV+EL K+L+++CL CL++
Sbjct: 56 NPSLGLPLQVGSCESCGATQLDRCEGHFGFIELPAPIYHPSHVAELGKILNIICLCCLRL 115
Query: 105 KKTKFPSSSSGLAQRLLSPCCQEPNAAQVSIREVKTGDGACYLVLKVS-KSKMQDGFWRF 163
KK P+ +R S C + + + +VK +GA L LK K ++ DGFW F
Sbjct: 116 KK---PNEKGTGKERKFSSCSYCQDIPPLCVTQVKKSNGARSLELKAPLKEEVGDGFWSF 172
Query: 164 LDKYGYRYEV-DHTRALLPCEVMEMIKRFPLETKKKLAGKGYFPQDGYVIKYLPVPPNCL 222
LD++G+ + H R L P EV ++++ +TK +LA +GY Q+G+V+ Y+ VPPNCL
Sbjct: 173 LDQFGFHTILTSHRRPLHPKEVQNIMEKISKQTKIRLAARGYNLQNGFVMSYMCVPPNCL 232
Query: 223 XXXXXXXXXXXXXXXXXXT-FLRKLLRKVEVIRSSRSGEPNFESHQVEANDLQSVVDQYL 281
L+K+LR +E I+SS PNFE+ +V +DLQ V Y+
Sbjct: 233 HISNLLDDNTDMYPPDTSKGLLQKVLRIIEQIKSSSISHPNFEACEVGEDDLQVAVADYI 292
Query: 282 QIRGCAKPARDIETHFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRIN 341
+ G AK + + + K W +MK+LFISK S F+ R+VITGD Y ++
Sbjct: 293 NMGGTAKGTQSVTFS-------RQPAPKQWQQRMKALFISKSSSFTCRAVITGDPYIGLD 345
Query: 342 EVGIPHEIAQRITFEERVNSHNMCYLQKLVDENLCLAYKE-GVSTYSL--REGSKGHTYL 398
VG+P+E+A R++ EE V +N+ LQ ++D+ LCL Y + +TY L +G K HT L
Sbjct: 346 VVGVPNEVASRMSVEEHVTDYNIARLQYMMDKGLCLTYTDVNSNTYDLSGEKGRKKHTML 405
Query: 399 KPGQIVHRRIMDGDIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDC 458
+ G+ V RR++DGD+VF+NR P+T HS+QAL V +HDDHT+KINPLICGPLGADFDGDC
Sbjct: 406 RVGETVDRRVLDGDLVFLNRSPSTDMHSVQALYVLLHDDHTIKINPLICGPLGADFDGDC 465
Query: 459 VHLFYPQSLAAKAEVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKKGFMDRAAAN 518
VH+F+P+S++A+ E ELF+VE QL++SH + + R AN
Sbjct: 466 VHIFFPRSVSARVEATELFTVENQLVNSHNAKLNFQIKEDYLLALKIMCDRRY-SREEAN 524
Query: 519 QMAMFLSLPLPQPALLKAGSGDCYWTSTQILQCALPLSFDCTGGRYLIRESDILGFDLGR 578
Q+AMF S +P GD YWT +QILQ T G + S +
Sbjct: 525 QIAMFSSGMIP--------PGDPYWTISQILQ---------TTGSLITLPSHP-----NK 562
Query: 579 DVLPAVINEIAASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHDFSISGAVKRIT 638
+ + A++ I +S GKGP+EA+ ++LQP LME + +GFS+ L DF+ A+++
Sbjct: 563 ESVGALVTAIISSTLKGKGPREAIKLLNLLQPLLMESLLMDGFSMSLRDFNGPSAMQK-- 620
Query: 639 DRNIGKVSPLLYQLRFIYNELVAQQLEKHMQDIELPAIKFASKSSRLGDMIDSKSKSALD 698
V Q + ++ + F + S LG ++D KS SAL
Sbjct: 621 ---------------------VIQSTSLELDELRESTVDFIAHYSALGLLVDPKSDSALR 659
Query: 699 KVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGY-PSAEYGLLKGCFFHGL 757
K+ +Q+GFLG+QL GRLYS L+ED F KC Y P + ++K F++GL
Sbjct: 660 KLVEQLGFLGRQLQNNGRLYSSNLVEDCYK-FMNKCSGSTKCYDPLKAHDVVKSSFYNGL 718
Query: 758 DPFEELVHSISTREIMVRSS-RGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQF 816
+P+EEL+HSIS RE + RSS +GL+EPG LFKN+MAILRDV+VCYDGT+R CSNSI+QF
Sbjct: 719 NPYEELLHSISVREKIERSSSKGLAEPGNLFKNMMAILRDVIVCYDGTIRTSCSNSIVQF 778
Query: 817 EYGLKAGDNASYLFPA-GEHVGVLAATAMSNPAYKAVLDASPSSNCSWELMKEILLCKVH 875
+ + D +S + P G+ VG+LAATA++N AYKAVLD + ++ SW+LMKE+LL K
Sbjct: 779 D----STDVSSSVTPGPGDPVGILAATAVANAAYKAVLDPNQNNMTSWDLMKEVLLTKAS 834
Query: 876 FRNEPIDRRVILYLNDCDCGRSYCRENAAYAVKNQLRKVSLKDTAVDFIVEYQQQRKRKG 935
++ ID++ ILYL+ C CG +C E AA V++ L+++ ++D A + ++Y +
Sbjct: 835 SISDTIDQKEILYLDKCFCGFEFCMERAALRVQSCLKRIKIEDCATEVSIKYHPE----A 890
Query: 936 SEIDAGLVGHIHLDEVKLEELKINMAEVFQRCQEKLDSFNRK-RKFNQIFKRTELFFSES 994
++ LVGHIHLD+ +L ++I + Q+CQE + +K R+ QI+K TE+ SE
Sbjct: 891 TQAAHCLVGHIHLDKEQLNRMEITTEHILQKCQEVISKHEKKSRQMRQIWKTTEMISSEY 950
Query: 995 CV-------SPNFSAPCLTFIWPAGDGNDLHET--TKILADTICPALLDTIIQGDPRINS 1045
C+ CL L E+ ++ +TI P LLDTII+GDPR+
Sbjct: 951 CLYDQDIGDEEALQVSCLEVFLDTSTTTGLSESNVAHLMTNTIFPILLDTIIKGDPRVQD 1010
Query: 1046 ANIIWVNPDTNTWVRNPSKSSNGELALDIILEKESIKQNGDAWRIVLDSCLPVLHLIDTR 1105
A +IW+ P++ WV+N S GELAL+I +EK ++ ++G W + +D+C+PV+ LIDT+
Sbjct: 1011 AKVIWIEPESTCWVQNSSAEQKGELALEITVEKVAVAESGGTWGVAMDACVPVMDLIDTK 1070
Query: 1106 RSIPYAIKQIQELLGISCTFDQAIQRLAASVKMVAKGVLREHLILLASSMTCGGNLVGFN 1165
RS+PY I+++ ++ GISC FD+ Q L+ +V MV K V+ +HL +ASSMTC G+L GFN
Sbjct: 1071 RSMPYNIQEVHKVFGISCVFDRVTQHLSKAVGMVTKSVITDHLTTVASSMTCTGSLHGFN 1130
Query: 1166 TGGYKALARQLNIQVPFTDATLFTPKRCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGS 1225
GYKA + L IQ PFT+ATL P +CF ++AEK +D L+S+V++CSWG A+GTGS
Sbjct: 1131 RSGYKATFQSLKIQAPFTEATLSRPMQCFRKSAEKVDSDQLASVVSTCSWGNHAAIGTGS 1190
Query: 1226 KFDVLWDAKEIKSND--LDGMDVYNFLHMVKSLTNGE----EENNACXXXXXXXXXXXXN 1279
F + W + S+D L G +Y+FL +V ++ E +++C
Sbjct: 1191 AFKIHWKDEIQSSSDEILGGYGLYDFLALVGTIGAAELKTVTPHSSCLY----------- 1239
Query: 1280 ADYSLSPQHTSGVDAVFEETFEAMNGPESNGWGSNTDRTETNST--QWSAWESNKAETKD 1337
D P+ D V E+ + G W TD+T+ +S + + T+
Sbjct: 1240 -DVDKIPE-----DEVQEDEVVCLGGNLPISW---TDKTKADSLLHDFKGRSTGIHRTRQ 1290
Query: 1338 GGSQRVHEDSWTSRDVMKDD---SQMTNAWDGNVEQTKTISNDWTAWGKNKSEIQDNVAE 1394
++ W S K+D + +A+ G+ T +N+W NK D+V E
Sbjct: 1291 ESQGTQNKSDWNSVANWKNDRPRGPLHSAFAGS-----TSTNEW-----NKRRFTDHVFE 1340
Query: 1395 KAEGECGSSEKWKTAVIQEG-----SSK--SNAWKSNIEQRSDEDSWTSQKLKADVIQDS 1447
+ + + W +AV + SSK + A K I S W +
Sbjct: 1341 RKQPK----HSWSSAVTHQDDKPSWSSKNVAGAQKHGITLSSSSGGWNKKNSGFGRGGSR 1396
Query: 1448 SKPSSWGAKPKSNDSSNW 1465
S G+ ++S NW
Sbjct: 1397 GMRKSEGSHSGGSNSRNW 1414
>M8C0F8_AEGTA (tr|M8C0F8) DNA-directed RNA polymerase II subunit RPB1 OS=Aegilops
tauschii GN=F775_23577 PE=4 SV=1
Length = 1600
Score = 933 bits (2412), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 570/1555 (36%), Positives = 836/1555 (53%), Gaps = 178/1555 (11%)
Query: 67 KCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKMKKTKFPSSSSGLAQRLLSPCCQ 126
K GHFG+I+LPV +YHPSH++EL K+L+++C +CL+ K K S + CQ
Sbjct: 63 KAAGHFGFIKLPVSVYHPSHIAELTKILNMICFSCLQFKNCKNQKSVEKESNFTSCSYCQ 122
Query: 127 EPNAAQVSIREVKTGDGACYLVLKV-SKSKMQDGFWRFLDKYGYRYE-VDHTRALLPCEV 184
+ + + +VK +GA L L+V S+ ++++GFW FLD++G+ + H R L EV
Sbjct: 123 D--LPPIHVAKVKKSNGALTLELRVPSRKELEEGFWSFLDQFGFHTKGSSHCRRLFAEEV 180
Query: 185 MEMIKRFPLETKKKLAGKGYFPQDGYVIKYLPVPPNCLXXXXXXXXXXXXXXXXXXTFLR 244
+++++ +T++++A KGY QDG+V+ LPVPPNCL LR
Sbjct: 181 QKIMEKISEKTRRQIAAKGYILQDGFVMSNLPVPPNCLRAYNVLDETLMCSPDASTNLLR 240
Query: 245 KLLRKVEVIRSSRSGEPNFESHQVEANDLQSVVDQYLQIRGCAKPARDIETHFGVNKELS 304
K++ V I +SR G P F+ H+VEA+DLQ + Y++ G A+ + I S
Sbjct: 241 KIVLNVHSINNSRVGPPTFKEHEVEADDLQVAIADYIKHAGTARGPQGITFK-------S 293
Query: 305 DASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNM 364
+ K W KMKSL ISK S FS R VITGD Y +N VG+P E+A+R++ +ERV +N+
Sbjct: 294 LPATKQWQQKMKSLCISKSSSFSCRGVITGDPYIPMNVVGVPDEVARRMSVQERVTDYNI 353
Query: 365 CYLQKLVDENLCLAYKEGVS-TYSLREG--SKGHTYLKPGQIVHRRIMDGDIVFINRPPT 421
LQ ++D LCL +++ S T+SL G +K T LK G+ V+RRI+DGD VF+NRPP+
Sbjct: 354 AQLQGMMDRGLCLTHEDANSITHSLDVGKANKKRTILKVGETVNRRILDGDAVFVNRPPS 413
Query: 422 THKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEK 481
T KHS+QA+ V +H DHT+KINPLICGPLGADFDGDCVH+F+P+S++A+AE +ELF+VEK
Sbjct: 414 TDKHSVQAMYVRVHTDHTIKINPLICGPLGADFDGDCVHIFFPRSVSARAEAIELFTVEK 473
Query: 482 QLLSSHXXXXXXXXXXXXXXXXXXXVKKGFMDRAAANQM--AMFLSLPLPQPALLKAGSG 539
QL+SSH + + R AN++ AMF + +P+ L SG
Sbjct: 474 QLVSSHNAKLNFQLKNDCLLALKKMSARKY-SRREANELLNAMFTAGLIPKKRL----SG 528
Query: 540 DCYWTSTQILQCALPLSFDCTGGRYLIRESDILGFDLGRDVLPAVINEIAASVFFGKGPQ 599
W+ QIL+ LP +E+ IL RD++ I +SV K P+
Sbjct: 529 RPEWSFAQILETVLP------------QENKILI----RDLVAGTIT--ISSVLSTKNPR 570
Query: 600 EALNFFDVLQPFLMECIFSNGFSVGLHDFSISGAVKRITDRNIGKVSPLLYQLRFIYNEL 659
EA+ F ++LQP LME +F++GFSV L DF++ + +
Sbjct: 571 EAIEFLNLLQPLLMESLFTDGFSVSLRDFNVQNPIPQ----------------------- 607
Query: 660 VAQQLEKHMQDIELPAIKFASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYS 719
Q + + P + F + SS + ++D K SA+ KV +QIGFLG QL GRLYS
Sbjct: 608 TIQHQTLDLDKLRKPIVDFIT-SSDIRFLVDQKRDSAMTKVVEQIGFLGHQLQRNGRLYS 666
Query: 720 KGLLEDVASHFKLKCDYDGDG-YPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSR 778
L+ED S KC +G +P +G ++ +GL+P+E+L+HSIS RE +R+S+
Sbjct: 667 GSLVEDCVSKSLSKCGSSTNGCHPLEAHGFVRNSLCNGLNPYEDLLHSISAREKTIRASK 726
Query: 779 GLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGLKAGDNASYLFPAGEHVGV 838
GL EPG LFKN+MA+LRDVV CYDGT+RN C NS+++F+ N+S G+ VG+
Sbjct: 727 GLVEPGVLFKNMMAMLRDVVACYDGTIRNSCGNSVVKFD-----SRNSSSSVTPGDPVGI 781
Query: 839 LAATAMSNPAYKAVLDASPSSNCSWELMKEILLCKVHFRNEPIDRRVILYLNDCDCGRSY 898
LAATA++N AYKAVLD + ++ SW+ MKE+LL + RNE D+++ILYLN C CG ++
Sbjct: 782 LAATAVTNAAYKAVLDPNQNNMASWDSMKEVLLTRASSRNEN-DQKIILYLNKCSCGDNF 840
Query: 899 CRENAAYAVKNQLRKVSLKDTAVDFIVEYQQQRKRKGSEIDAGLVGHIHLDEVKLEELKI 958
C E A+ AV+ L++ ++D A +F + YQQQ + LVGHIHLD+ +L+E+ I
Sbjct: 841 CMERASLAVQACLKRTKVEDCATEFSIHYQQQ----NIQATHCLVGHIHLDKKQLDEMNI 896
Query: 959 NMAEVFQRCQEKLDSFNRKR-KFNQIFKRTELFFSESC---VSPNFSAPCLTFIWPAGDG 1014
+M + Q+CQ+++ +K+ + NQ+ KR + C CL F
Sbjct: 897 SMQGILQKCQKEIYRCGKKKGQVNQLMKRVVISSEYMCYQDADDEEQVSCLQFFLTKSVT 956
Query: 1015 NDLHETTKI---LADTICPALLDTIIQGDPRINSANIIWVNPDTNTWVRNPSKSSNGELA 1071
+ ++ +A+TI P LLDTII+GDPR+ NIIW P WV+N GELA
Sbjct: 957 TQSESSARVVQLMANTISPILLDTIIKGDPRVQEVNIIWAEPQDTCWVQNSGTEQKGELA 1016
Query: 1072 LDIILEKESIKQNGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQIQELLGISCTFDQAIQR 1131
L I ++K+S ++GD W +D+C+PV+ LIDT RS+PY+I++++E GIS F + Q
Sbjct: 1017 LVITMDKDSTGESGDVWGTAMDACIPVMDLIDTTRSVPYSIQRVREGFGISSAFGRVTQH 1076
Query: 1132 LAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDATLFTPK 1191
L+ +V MV K VL EHL +ASSMTC GNL GFN+ GYKA + L IQ PF AT P
Sbjct: 1077 LSKAVGMVTKSVLEEHLTTVASSMTCTGNLHGFNSYGYKATFKALKIQAPFMKATRARPL 1136
Query: 1192 RCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSKFDVLWDAKEIKSN--DLDGMDVYNF 1249
+CFE AEK ++D L S+V++CSWG P +GTGS F + W+ + +L G +Y F
Sbjct: 1137 QCFEEGAEKVYSDQLDSVVSTCSWGNPAPIGTGSAFKIHWNDGNTSAGNENLGGYGLYEF 1196
Query: 1250 LHMVKSLTNGEEENNACXXXXXXXXXXXXNADYSLSPQHTSGVDAVFEETFEAMNGPESN 1309
L V++ T E+N + Y + D + E+ + G
Sbjct: 1197 LTEVET-TRATEDN---------MIVPYGSCLYDVDNLQE---DEIKEDEVLCLGGNSPI 1243
Query: 1310 GWGSNTDRTETNST--QWSAWESNKAETKDGGSQRVHEDSWTSRDVMKDDSQMTNAWDGN 1367
W TDR ++N W + + G Q+V +W + S T+ W+ +
Sbjct: 1244 SW---TDRPKSNLLLHDLQGWRAEQ------GHQKVPVANWQHGKHVATKSSGTSGWNQS 1294
Query: 1368 VEQTKTISNDWTAWGKNKSEIQDNVAEKAEGECGSSEKWKTAVIQEGSSKSNAWKSNIEQ 1427
TK V Q SN W S+ Q
Sbjct: 1295 SSTTK-------------------------------------VYQRRQRNSN-WGSDATQ 1316
Query: 1428 RSDEDSWTSQKLKADVIQDSSKPSSWGAKPKSNDSSNWGRNKDEIQDVVSRRAEDDSWSS 1487
+ W KA V + PS++ S+ +S W ++ + V RR D +W
Sbjct: 1317 QDGNPCWN----KAYV----AGPSNFAITGPSSGTSGWNQSSSTTK-VYQRRQLDSNW-- 1365
Query: 1488 KKQLSSDATQEDSS----KFSFWG-GNKDTTKPKSN-DWSSWGGNRDGI---------QD 1532
SSDATQ+D + K + G GN T P S+ WS N +
Sbjct: 1366 ----SSDATQQDGNASWKKANVAGQGNFAITGPSSSGGWSRKTNNLGRGRRGGRGAIWKS 1421
Query: 1533 GGSKRAQDDSWSSQKDVTRESSSKVDAWGANNEASNPKSNDWSAW---GKNKDGT 1584
GS R + W +Q+ T + + ++ +N N K+ AW G N+ G+
Sbjct: 1422 EGSHRGGNSRWKTQRANTTSAPNFHNSGPSNYGGRNIKTGRGPAWRSNGPNRGGS 1476
>J3L864_ORYBR (tr|J3L864) DNA-directed RNA polymerase OS=Oryza brachyantha
GN=OB01G54200 PE=3 SV=1
Length = 1576
Score = 920 bits (2379), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 520/1254 (41%), Positives = 748/1254 (59%), Gaps = 106/1254 (8%)
Query: 45 NPFLGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKM 104
NP LG+PL+ G C+SCG++ + +CEGHFG+IELPVPIYHPSHV+EL KML+ +CL+CL++
Sbjct: 74 NPHLGMPLQVGSCQSCGSASSEECEGHFGFIELPVPIYHPSHVTELSKMLNFICLSCLRI 133
Query: 105 KKTKFPSSSSGLAQRLLSPCCQEPNAAQVSIREVKTGDGACYLVLKVSKSK-MQDGFWRF 163
K +K +S++ ++ CQE + I EVK +GAC L L+ K +++GFW F
Sbjct: 134 KNSK--NSTTKGSKFTSCSHCQE--LQPLCIAEVKKSNGACGLELRAPVQKELEEGFWSF 189
Query: 164 LDKYG-YRYEVDHTRALLPCEVMEMIKRFPLETKKKLAGKGYFPQDGYVIKYLPVPPNCL 222
LD++G H R LLP EV +I + P+ET+ +LA +GY PQDG+V+ YL VPPNCL
Sbjct: 190 LDQFGGCTRGASHRRPLLPEEVENIIMKIPVETRTRLAVRGYIPQDGFVMNYLCVPPNCL 249
Query: 223 XXXXXXXXXXXXXXXXXXT-FLRKLLRKVEVIRSSRSGEPNFESHQVEANDLQSVVDQYL 281
T LRK+LRK++ I SSR G N + +QV+A+DLQ V Y+
Sbjct: 250 QAFNVLDGNTYMCPSGTSTNLLRKILRKIQQISSSRIGSSNIQVNQVDADDLQVAVANYI 309
Query: 282 QIRGCAKPARDIETHFGVNKELSDASNKA---WLDKMKSLFISKGSGFSSRSVITGDGYK 338
+RG K ++++ AS A W KMK+ FISK S FSSR VITGD Y
Sbjct: 310 NLRGTTK-----------GQDVTFASQPASIRWQQKMKTFFISKSSSFSSRGVITGDPYI 358
Query: 339 RINEVGIPHEIAQRITFEERVNSHNMCYLQKLVDENLCLAYKEGVS-TYSLREGS----K 393
+N VG+P EIA+R++ EERV HN+ LQ +++ LCL Y + S TYSL EG K
Sbjct: 359 GLNVVGVPEEIAKRMSVEERVTDHNIDQLQDMMNNGLCLTYIDANSITYSLDEGQDNQKK 418
Query: 394 GHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGAD 453
+ LK G+IV+RR++DGD+VF+NRPP+T KHS++A V IH+DHT+KINPLICGPLGAD
Sbjct: 419 KYITLKVGEIVNRRVLDGDVVFLNRPPSTDKHSVEAFYVQIHNDHTMKINPLICGPLGAD 478
Query: 454 FDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKKGFMD 513
FDGDCVH+FYP+SL+A+AEV ELF+V+KQL+SSH K + +
Sbjct: 479 FDGDCVHIFYPRSLSARAEVTELFTVDKQLVSSHNGKLNFQLKNDCSLALKIICDKEYSE 538
Query: 514 RAAANQM--AMFLSLPLPQPALLKAGSGDCYWTSTQILQCALPLSFDCTGGRYLIRESDI 571
R A NQ+ AMF S PQ L+ G WT QIL+ I ++
Sbjct: 539 REA-NQITNAMFSSGMFPQKPLM----GRPCWTFLQILE---------------ITDAIT 578
Query: 572 LGFDLGRDVLPAVINEIAASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHDFSIS 631
L L R+ + ++ +S+ KGP+EA+ F ++LQP LME + +GFS+ L DF++
Sbjct: 579 LADHLDRESVGSLATGAISSIVSMKGPREAIEFLNLLQPLLMESLLIDGFSISLRDFTVP 638
Query: 632 GAVKRITDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQDIELPAIKFASKSSRLGDMIDS 691
SP+L + Q + P + F + SS +G +ID
Sbjct: 639 --------------SPILEAI---------QNSPLELNKFREPIVDFITHSSAIGLLIDP 675
Query: 692 KSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASH-----FK-LKCDYDGDGYPSAE 745
S SA+ KV +Q+GFLG QL G+LYS L+ED S F+ ++C P
Sbjct: 676 NSDSAMKKVVEQLGFLGPQLQHNGKLYSSRLVEDCLSKSLHRSFRSIRCHN-----PLEA 730
Query: 746 YGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTV 805
+G ++ +HGLDP+E L+HSI RE ++ +S+GL EPG+LFKN+MA LRDV+ CYDGT+
Sbjct: 731 HGTVRSSIYHGLDPYEALLHSICERETIMYASKGLVEPGSLFKNMMARLRDVIACYDGTI 790
Query: 806 RNVCSNSIIQFEYGLKAGDNASYLFPAGEHVGVLAATAMSNPAYKAVLDASPSSNCSWEL 865
R N ++QF N S G+ VG+LAATA++N AYKAVL + ++ SW+
Sbjct: 791 RTSSGNLVLQF-----GSMNPSNCMTPGDPVGILAATAVANAAYKAVLAPNQNNITSWDS 845
Query: 866 MKEILLCKVHFRNEPIDRRVILYLNDCDCGRSYCRENAAYAVKNQLRKVSLKDTAVDFIV 925
MKE+LL + + + + R+VILYL+ C C A V+ LR+V ++D + +
Sbjct: 846 MKEVLLTRANSKTDTNCRKVILYLSQCSCENESMER--ALTVRTCLRRVKVEDCTTEIAI 903
Query: 926 EYQQQRKRKGSEIDAGLVGHIHLDEVKLEELKINMAEVFQRCQEKLDSFNRKRKFNQIFK 985
+YQQQ + LVGH+HLD+ +L +++ MA+V +CQE +KR +
Sbjct: 904 KYQQQTTQAADR----LVGHVHLDKKRLNQMQTTMADVLHKCQEVFRKNIKKRGQMRETL 959
Query: 986 RTELFFSESCVSPNFS-------APCLTFIWPAGDGNDLHETTKILADTICPALLDTIIQ 1038
RT F V + CL A ++ + I P +LDT+I+
Sbjct: 960 RTVTFVPSERVCDQHTYNDRELQVSCLQLFLTAKISESTERVVHLMTNAIFPVVLDTVIK 1019
Query: 1039 GDPRINSANIIWVNPDTNTWVRNPSKSSNGELALDIILEKESIKQNGDAWRIVLDSCLPV 1098
GDPR+ AN++ + P++ WV++ G++AL+I +EK + G+AW + +D+C+PV
Sbjct: 1020 GDPRVEEANLVRIEPESTCWVQSFGAEQKGKVALEITVEKAVAAKTGNAWGVAMDACIPV 1079
Query: 1099 LHLIDTRRSIPYAIKQIQELLGISCTFDQAIQRLAASVKMVAKGVLREHLILLASSMTCG 1158
+ LIDT RS+PY I+Q++++ GIS TF++ Q L+ +V MV K VL++HL +ASSMTC
Sbjct: 1080 IDLIDTTRSVPYDIQQVRQVFGISSTFEKVTQHLSKAVGMVTKSVLQDHLTTVASSMTCT 1139
Query: 1159 GNLVGFNTGGYKALARQLNIQVPFTDATLFTPKRCFERAAEKCHTDSLSSIVASCSWGKP 1218
G+L GFN+ GYKA ++ L +Q PF DATL T RCFE+AA K ++D L SIV+SCSWG
Sbjct: 1140 GDLHGFNSSGYKATSQSLKVQAPFMDATLSTSTRCFEKAAAKAYSDQLGSIVSSCSWGNN 1199
Query: 1219 VAVGTGSKFDVLWDAKEIKSND--LDGMDVYNFLHMVKSLTNGEEE----NNAC 1266
A+GTGS F++LW+ + + S+ L G +Y+FL V++ E++ +N+C
Sbjct: 1200 AAIGTGSAFEILWNNENMSSSKSILGGYGLYDFLEAVETTRATEDKAIVPHNSC 1253
>M0WRB8_HORVD (tr|M0WRB8) DNA-directed RNA polymerase OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 925
Score = 918 bits (2373), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 458/929 (49%), Positives = 625/929 (67%), Gaps = 14/929 (1%)
Query: 212 IKYLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEVIRSSRSGEPNFESHQVEAN 271
+KYLPVPPNCL + L+K+L+K+E I+ SRSG PNFES+ E+
Sbjct: 1 MKYLPVPPNCLYIPEFTDGQSIMSYDISISLLKKILQKIEQIKKSRSGSPNFESNDSEST 60
Query: 272 DLQSVVDQYLQIRGCAKPARDIETHFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSV 331
DLQ + QY+Q+RG K +D + F V+ + S S K WL+KM++LFISKGSGFSSRSV
Sbjct: 61 DLQLSIGQYIQLRGTTKGPQDAK-RFSVSTDSSHLSTKQWLEKMRTLFISKGSGFSSRSV 119
Query: 332 ITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLVDENLCLAYKEGVSTYSLREG 391
+TGD Y + VG+P E+A+RITFEE+V N+ LQ++VD+ LCL Y++G +TY++ G
Sbjct: 120 LTGDPYIGADVVGLPSEVAKRITFEEQVTDTNLNRLQEVVDKGLCLTYRDGQTTYAITVG 179
Query: 392 SKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLG 451
SKG+T LK GQ + RRI+DGD+VF+NRPP+THKHSLQA VYIHDDHTVKINPLIC PL
Sbjct: 180 SKGYTTLKVGQTISRRIVDGDVVFLNRPPSTHKHSLQAFTVYIHDDHTVKINPLICSPLA 239
Query: 452 ADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKKGF 511
ADFDGDCVH++YPQSLAAKAE +ELFSVEKQL +SH +
Sbjct: 240 ADFDGDCVHIYYPQSLAAKAEALELFSVEKQLTNSHNGKVNLQLANDSLLALKHMSSRTM 299
Query: 512 MDRAAANQMAMFLSLPLPQPALLKAGSGDCYWTSTQILQCALPLSFDCTGGRYLIRESDI 571
+ + +ANQ+AM LSL LP PA++K S C WT TQI+Q ALP C G R+L+R+S +
Sbjct: 300 LSKESANQLAMLLSLSLPAPAVVK--SKPC-WTITQIMQSALPAELTCEGDRFLVRDSTV 356
Query: 572 LGFDLGRDVLPAVINEIAASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHDFSIS 631
+ DL ++ + A +E+ +S+ KGP +AL F + LQPFLME + +GFSV L DFS+
Sbjct: 357 IKLDLDKESIQASFSELVSSILAVKGPGDALKFLNALQPFLMEFLLLDGFSVSLQDFSVP 416
Query: 632 GAVKRITDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQDIELPAIKFASKSSRLGDMIDS 691
+ I K S +L Q R ++ V +++ +++D++ F KSSRLG +ID
Sbjct: 417 KPLLEEAQECIKKQSLVLEQSRCSNSQSVEVRVDNNLKDVKQQIADFVVKSSRLGLLIDP 476
Query: 692 KSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHF--KLKCDYDGDGYPSAEYGLL 749
KS ++ KV QQ+ F+G QL+ G+ YS+ L++D S F + DG +P YGL+
Sbjct: 477 KSDPSVSKVVQQLAFVGPQLYREGKFYSRRLVDDCFSSFVNRHPPIEDGVQHPPEAYGLV 536
Query: 750 KGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVC 809
+ +FHGL+P+EELVHSI TRE +VRSSRGL+EPGTLFK+LMAILRDVV+CYDGTVRN+C
Sbjct: 537 QSAYFHGLNPYEELVHSICTRETIVRSSRGLTEPGTLFKSLMAILRDVVICYDGTVRNIC 596
Query: 810 SNSIIQFEYGLKAGDNASYLFPAGEHVGVLAATAMSNPAYKAVLDASPSSNCSWELMKEI 869
SNSI+Q +Y + + GE VGVLAATA+SNPAYKAVLDAS S+N SWELMKEI
Sbjct: 597 SNSIMQLKYKEEDDTDFPSAIAPGEPVGVLAATAISNPAYKAVLDASQSNNTSWELMKEI 656
Query: 870 LLCKVHFRNEPIDRRVILYLNDCDCGRSYCRENAAYAVKNQLRKVSLKDTAVDFIVEYQQ 929
L KV ++N+ DR+VIL+LNDC C + +C+E AA AV+ L++V+L+D A D +EY +
Sbjct: 657 LKTKVSYKNDAKDRKVILFLNDCSCPKKFCKEKAAIAVQGCLKRVTLEDCATDICIEYHK 716
Query: 930 QRKRKG-SEIDAGLVGHIHLDEVKLEELKINMAEVFQRCQEKLDSF-NRKRKFNQIFKRT 987
Q SE VGHIHL++ LE++ +++ E+ +CQE N+K +FK+
Sbjct: 717 QVSLAATSEAIPAFVGHIHLEKAYLEKINVSIDEILHKCQEVSGKHANKKGTLGHLFKKI 776
Query: 988 ELFFSESCVSP---NFSAPCLTFIWPAGD---GNDLHETTKILADTICPALLDTIIQGDP 1041
+ + + PCL F + + + + +LAD++C LL+ II+GDP
Sbjct: 777 TFSTCDCSFTQKPGDEKVPCLQFSFSEDIPMLSDSVEKAVNVLADSLCSVLLEIIIKGDP 836
Query: 1042 RINSANIIWVNPDTNTWVRNPSKSSNGELALDIILEKESIKQNGDAWRIVLDSCLPVLHL 1101
R+ A I WV D +WV++ K S GE A++II+EK+ QNGDAWRI +D+C+PV++L
Sbjct: 837 RVQEAKITWVGSDATSWVKHTKKISKGEPAVEIIVEKKEAMQNGDAWRIAMDACIPVMNL 896
Query: 1102 IDTRRSIPYAIKQIQELLGISCTFDQAIQ 1130
IDT+RSIPY I+Q++ELLGISC+FDQ +Q
Sbjct: 897 IDTQRSIPYGIQQVRELLGISCSFDQVVQ 925
>C5XJ93_SORBI (tr|C5XJ93) DNA-directed RNA polymerase (Fragment) OS=Sorghum bicolor
GN=Sb03g046922 PE=3 SV=1
Length = 1571
Score = 889 bits (2296), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 497/1257 (39%), Positives = 733/1257 (58%), Gaps = 103/1257 (8%)
Query: 45 NPFLGLPLEYGR-CESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLK 103
NP LGLPL+ G CESCG ++ KC+GHFG+I+LP PIYHPSH++EL K+L+LVCL CL+
Sbjct: 55 NPSLGLPLQDGSTCESCGATQLDKCDGHFGFIKLPEPIYHPSHIAELGKILNLVCLRCLR 114
Query: 104 MKKTKFPSSSSGLAQRLLS-PCCQEPNAAQVSIREVKTGDGACYLVLKVS-KSKMQDGFW 161
+KK P +G R S CQE + + + +VK +GA L LK+ K ++ DGFW
Sbjct: 115 LKK---PKKVTGKESRFTSCSYCQE--LSPLCVSQVKKSNGARSLELKLPLKQEVADGFW 169
Query: 162 RFLDKYGYRYE-VDHTRALLPCEVMEMIKRFPLETKKKLAGKGYFPQDGYVIKYLPVPPN 220
FLD++G+ H R L P EV +++K+ +T+ +LA +GY QDG+V+ + +PPN
Sbjct: 170 SFLDQFGFHTSGTSHRRPLHPKEVQDIMKKITEKTRARLAARGYNLQDGFVMDNMSIPPN 229
Query: 221 CLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEVIRSSRSGEPNFESHQVEANDLQSVVDQY 280
CL L K+LR +E I S PN E+ ++ A+DLQ V Y
Sbjct: 230 CLQISNMLDENTEMCPPTSKGLLHKVLRTIEQIESLNISHPNIEARELGADDLQVAVADY 289
Query: 281 LQIRGCAKPARDIETHFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRI 340
+ + G AK + H ++ + K W KMK+LF+SK S ++ R+VITGD Y +
Sbjct: 290 MNMGGAAK----VSQHVTFTRQ---PAPKQWHKKMKTLFLSKSSSYTCRAVITGDPYIGL 342
Query: 341 NEVGIPHEIAQRITFEERVNSHNMCYLQKLVDENLCLAYKE-GVSTYSL--REGSKGHTY 397
+ VG+P EIA+R++ +E V ++N+ LQ ++++ LCL Y + +TY L ++G+K
Sbjct: 343 DVVGVPDEIARRMSVQECVTNYNIARLQDMMNKGLCLTYTDLNTNTYDLDGKKGNKKCIM 402
Query: 398 LKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGD 457
L+ G+ V RR++DGD+VF+N+PP+T HS+QAL V++HDDHT+KINPLICGPL ADFDGD
Sbjct: 403 LRVGETVDRRVLDGDLVFLNKPPSTDMHSIQALYVHVHDDHTIKINPLICGPLEADFDGD 462
Query: 458 CVHLFYPQSLAAKAEVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKKGFMDRAAA 517
CVH+F+P+S+ A+ E ELF+VEKQLL+SH + + + A
Sbjct: 463 CVHIFFPRSVLARVEAAELFAVEKQLLNSHNAKLNFQIKNDYLLALRIMCDRSY-SKEKA 521
Query: 518 NQMAMFLS--LPLPQPALLKAGSGDC-YWTSTQILQCALPLSFDCTGGRYLIRESDILGF 574
NQ+AMF S +P P + C WT QILQ L R + + +G
Sbjct: 522 NQIAMFSSGMIPPCNPWTI------CDRWTIPQILQTTDAL-------RIVPSHPNTVG- 567
Query: 575 DLGRDVLPAVINEIAASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHDFSISGAV 634
A + I S KGP+EA+ ++LQP LME + +GFS+ L D A+
Sbjct: 568 --------ASVTAIITSTLSEKGPREAIKLINLLQPLLMESLLMDGFSISLKDLDGQSAM 619
Query: 635 KRITDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQDIELPAIKFASKSSRLGDMIDSKSK 694
++ N+ ++ +++K + I + F + SS LG ++D K+
Sbjct: 620 QKA-------------------NQSISLEIDKFSKSI----VDFIANSSALGLLVDPKND 656
Query: 695 SALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGCFF 754
SAL + +Q+GFLG QL RLYS L+ED + + + P + + F+
Sbjct: 657 SALMNLVEQVGFLGYQLQSTDRLYSNNLVEDCYNFLEKRSGSTKCYDPPKGHDFVTSSFY 716
Query: 755 HGLDPFEELVHSISTREIMVR-SSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSI 813
+GL+P+EEL+HSIS RE + R SS+GL+E G LFKN+MA+LRDV VCYDGT+R +NSI
Sbjct: 717 NGLNPYEELLHSISVREKIERSSSKGLAEAGNLFKNMMAMLRDVTVCYDGTMRTSYNNSI 776
Query: 814 IQFEYGLKAGDNASYLFPAGEHVGVLAATAMSNPAYKAVLDASPSSNCSWELMKEILLCK 873
+QF+ N S G+ +G+LAAT +N AYKAVL + + SW+ MKE+LL
Sbjct: 777 VQFD-----STNVSSSLTPGDSIGILAATVFANAAYKAVLVPNQKNMTSWDSMKEVLLTN 831
Query: 874 VHFRNEPIDRRVILYLNDCDCGRSYCRENAAYAVKNQLRKVSLKDTAVDFIVEYQQQRKR 933
+ ID++ ILYLN C CG +C E AA+ V++ L+++ L+ A++ ++YQQ+
Sbjct: 832 ACSKTGTIDQKAILYLNKCFCGLKFCSELAAHRVQSCLKRIKLEYCAIEVSIKYQQE--- 888
Query: 934 KGSEIDAGLVGHIHLDEVKLEELKINMAEVFQRCQEKLDSFNRK-RKFNQIFKRTELFFS 992
++ LVGHIHLD+ +L ++I M + Q CQ+ ++ K R+ QI K TE+ S
Sbjct: 889 -ATQAAQCLVGHIHLDKEQLNWMEITMGNILQTCQKNVNKHVMKNRQLMQILKTTEIISS 947
Query: 993 ESCVSPN-------FSAPCLTFIWPAGDGNDLHETT--KILADTICPALLDTIIQGDPRI 1043
E C+ CL A E+ +++ +TI P LLDT+I+GDP++
Sbjct: 948 EYCLCGQDIGDERALQVSCLQCFIHASTTTVQPESNVIQMMTNTIFPILLDTVIKGDPQV 1007
Query: 1044 NSANIIWVNPDTNTWVRNPSKSSNGELALDIILEKESIKQNGDAWRIVLDSCLPVLHLID 1103
A +IWV P WV+N S GELA++I +EK + +NG W +V+D+C+PV+ LID
Sbjct: 1008 QEAKLIWVEPKLTRWVKNSSAEQKGELAVEITVEKIAAAENGGTWGVVMDACVPVMDLID 1067
Query: 1104 TRRSIPYAIKQIQELLGISCTFDQAI-------------QRLAASVKMVAKGVLREHLIL 1150
T RS P I+++Q++ GIS FD+ + Q L+ +V MV K VL EHLI
Sbjct: 1068 TTRSAPCNIQEVQKVFGISSVFDRVVQFLMFCPPLGSFFQHLSKAVGMVTKSVLMEHLIT 1127
Query: 1151 LASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDATLFTPKRCFERAAEKCHTDSLSSIV 1210
+ASSMTC G+L GFN G KA + L +Q PFT+ATL P +CF ++AEK +D L S+V
Sbjct: 1128 VASSMTCTGSLHGFNRSGSKATFQSLKVQAPFTEATLSRPMQCFRKSAEKVDSDQLDSVV 1187
Query: 1211 ASCSWGKPVAVGTGSKFDVLW-DAKEIKSND-LDGMDVYNFLHMVKSLTNGEEENNA 1265
++CSWG A+GTGS F + W D + SN+ L ++Y+FL V + E++ +A
Sbjct: 1188 STCSWGNHAAIGTGSAFKIHWNDENQSASNEILREYNLYDFLEAVGRIGATEQKTDA 1244
>Q5JJW0_ORYSJ (tr|Q5JJW0) DNA-directed RNA polymerase OS=Oryza sativa subsp.
japonica GN=P0458E05.13 PE=3 SV=1
Length = 1568
Score = 875 bits (2261), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 503/1261 (39%), Positives = 729/1261 (57%), Gaps = 129/1261 (10%)
Query: 45 NPFLGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKM 104
NP+LGLPL+ G C+SCG++ +CEGHF +IELP+PI+HPSHV+EL ++L+L+CL CLK+
Sbjct: 57 NPYLGLPLQVGSCQSCGSNAIEECEGHFRFIELPMPIFHPSHVTELSQILNLICLRCLKI 116
Query: 105 KKTKFPSSSSGLAQRLLSPCCQEPNAAQVSIREVKTGDGACYLVLKVS-KSKMQDGFWRF 163
K K L P C + EVK +GA L L+ K ++++GFW F
Sbjct: 117 KNRK-----------ELPPLC---------VAEVKKSNGARGLELRAPIKKELEEGFWSF 156
Query: 164 LDKYGY-RYEVDHTRALLPCEVMEMIKRFPLETKKKLAGKGYFPQDGYVIKYLPVPPNCL 222
LD++G H R LLP EV +IK+ P ET++ L+ +GY PQDG+++ YL VPPNCL
Sbjct: 157 LDQFGSCTRGTSHCRPLLPEEVQNIIKKIPEETRRWLSVRGYIPQDGFILSYLCVPPNCL 216
Query: 223 XXXXXXXXXXXXXXXXXXTFLRKLLRKVEVIRSSRSGEPNFESHQVEANDLQSVVDQYLQ 282
LRK LRK++ IR SR G N + QV A+DLQ V Y+
Sbjct: 217 RVSNVLDGNTFSCSGTSTNLLRKALRKIQQIRGSRIGSSNIQVDQV-ADDLQVDVANYIN 275
Query: 283 IRGCAKPARDIETHFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINE 342
+ G K G + S + W KMK+LFISK S FSSR VITGD Y +N
Sbjct: 276 LGGTTK-------GHGDDTFTSQPTAMQWKQKMKTLFISKSSSFSSRGVITGDPYIGLNV 328
Query: 343 VGIPHEIAQRITFEERVNSHNMCYLQKLVDENLCLAYKEGVS-TYSLREG----SKGHTY 397
VG+P E+A+R++ EE+V HN+ LQ ++++ LCL Y + S TYSL G +K HT
Sbjct: 329 VGVPEEVAKRMSVEEKVTDHNIAQLQDMMNKGLCLTYTDANSITYSLDAGKDNPNKKHTI 388
Query: 398 LKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGD 457
LK G+IV+RR+ DGDIVF+NRPP+T KHS++A V +H+DHT+KINPLIC PLGADFDGD
Sbjct: 389 LKVGEIVNRRVFDGDIVFLNRPPSTDKHSVEAFYVQVHNDHTIKINPLICDPLGADFDGD 448
Query: 458 CVHLFYPQSLAAKAEVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKKGFMDRAAA 517
CV +FYP+SL+A+AE EL++V+KQL+SSH + + +R A
Sbjct: 449 CVQIFYPRSLSARAEAKELYTVDKQLVSSHNGKLNFQFKNDFSLALKIMCGREYSER-EA 507
Query: 518 NQM--AMFLSLPLPQPALLKAGSGDCYWTSTQILQCALPLSFDCTGGRYLIRESDILGFD 575
NQ+ AMF S PQ L+ G YWT QIL+ S T +L RES
Sbjct: 508 NQITNAMFSSGMYPQKPLI----GGPYWTFPQILETT--KSNAITLADHLDRES------ 555
Query: 576 LGRDVLPAVINEIAASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHDFSISGAVK 635
V +S+ KGP+EA F ++LQP LME + + FS+ L DF++ +
Sbjct: 556 ----VGALATGTTISSILSTKGPREATEFLNLLQPLLMESLLIDCFSINLGDFTVPSPIL 611
Query: 636 RITDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQDIELPAIKFASKSSRLGDMIDSKSKS 695
N PL +L K+ + P + F + SS +G ++D KS S
Sbjct: 612 EAIQNN-----PL--------------ELNKYRE----PIMDFITHSSAIGLLVDPKSDS 648
Query: 696 ALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGD-GYPSAEYGLLKGCFF 754
++KV +Q+GFLG QL GRLYS L+ED S +C + P EYG ++ +
Sbjct: 649 NMNKVVEQLGFLGPQLQHNGRLYSSRLVEDCLSKSLHRCCGSTNCCNPLEEYGTVRSSIY 708
Query: 755 HGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSII 814
HGL+P+E L+HSI RE ++R+S+GL EPG+LFKN+M+ LRDV CYDG++R N ++
Sbjct: 709 HGLNPYEALLHSICEREKIMRASKGLVEPGSLFKNMMSRLRDVTACYDGSIRTSSGNLVL 768
Query: 815 QFEYGLKAGDNASYLFPAGEHVGVLAATAMSNPAYKAVLDASPSSNCSWELMKEILLCKV 874
QF +AS G+ VG+LAATA++N AYKAVL + ++ SW+ MKE+LL +
Sbjct: 769 QF-----GSRDASNCVTPGDPVGILAATAVANAAYKAVLAPNQNNIISWDSMKEVLLTRA 823
Query: 875 HFRNEPIDRRVILYLNDCDCGRSYCRENAAYAVKNQLRKVSLKDTAVDFIVEYQQQRKRK 934
+ + R+VILYLN C C + C E A ++ LR++ L+D + ++YQQQ
Sbjct: 824 STKADANHRKVILYLNQCSC-ENECMER-ALTIRACLRRIKLEDCTTEISIKYQQQ---- 877
Query: 935 GSEIDAGLVGHIHLDEVKLEELKINMAEVFQRCQEKL-DSFNRKRKFNQIFKRTELFFSE 993
++ LVGHIHLD+ +L +++ M V +CQE ++ +K +I K S
Sbjct: 878 ATQAAHHLVGHIHLDKKQLNQIETIMDSVLHKCQETFRNNIKKKGSMREILKTVTFISST 937
Query: 994 SCVSPN------FSAPCLTFIWPAGDGNDLHETTK----ILADTICPALLDTIIQGDPRI 1043
S + F CL F P ++ E+T+ + + I P +LDT+I+GDPR+
Sbjct: 938 SLCDQHTDDDKKFQVSCLQFFLPGSITKNISESTERVIDFMTNAIFPIILDTVIKGDPRV 997
Query: 1044 NSANIIWVNPDTNTWVRNPSKSSNGELALDIILEKESIKQNGDAWRIVLDSCLPVLHLID 1103
AN++ + P++ WV++ GE AL+I +E+ + ++G+AW + +++C+PV+ LID
Sbjct: 998 EEANLVRIEPESTFWVQSSGAEQKGEAALEITVEEAAAAESGNAWGVAMNACIPVMDLID 1057
Query: 1104 TRRSIPYAIKQIQELLGISCTFDQ---------------------------AIQRLAASV 1136
T RS+PY I+Q++++ GIS F++ + Q L+ SV
Sbjct: 1058 TTRSMPYDIQQVRQVFGISSAFEKVTQVQLFPFLLLAEIQVTSAETLLVLCSFQYLSKSV 1117
Query: 1137 KMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDATLFTPKRCFER 1196
M+ K VL+EHL +ASSMTC G+L GFN GYKA + L +Q PF +ATL +CFE+
Sbjct: 1118 GMITKSVLQEHLTTVASSMTCTGDLHGFNNSGYKATCQSLKVQAPFMEATLSRSIQCFEK 1177
Query: 1197 AAEKCHTDSLSSIVASCSWGKPVAVGTGSKFDVLWDAKEIKSND--LDGMDVYNFLHMVK 1254
AA K ++D L ++V++CSWG +GTGS F++LW+ + + S+ L G +Y+FL V+
Sbjct: 1178 AAAKAYSDQLGNVVSACSWGNNAEIGTGSAFEILWNDENMSSSKSILGGYGLYDFLEAVE 1237
Query: 1255 S 1255
+
Sbjct: 1238 T 1238
>B9EWM0_ORYSJ (tr|B9EWM0) DNA-directed RNA polymerase OS=Oryza sativa subsp.
japonica GN=OsJ_04874 PE=3 SV=1
Length = 1528
Score = 871 bits (2250), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 499/1234 (40%), Positives = 720/1234 (58%), Gaps = 115/1234 (9%)
Query: 45 NPFLGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKM 104
NP+LGLPL+ G C+SCG++ +CEGHF +IELP+PI+HPSHV+EL ++L+L+CL CLK+
Sbjct: 57 NPYLGLPLQVGSCQSCGSNAIEECEGHFRFIELPMPIFHPSHVTELSQILNLICLRCLKI 116
Query: 105 KKTKFPSSSSGLAQRLLSPCCQEPNAAQVSIREVKTGDGACYLVLKVS-KSKMQDGFWRF 163
K K L P C + EVK +GA L L+ K ++++GFW F
Sbjct: 117 KNRK-----------ELPPLC---------VAEVKKSNGARGLELRAPIKKELEEGFWSF 156
Query: 164 LDKYGY-RYEVDHTRALLPCEVMEMIKRFPLETKKKLAGKGYFPQDGYVIKYLPVPPNCL 222
LD++G H R LLP EV +IK+ P ET++ L+ +GY PQDG+++ YL VPPNCL
Sbjct: 157 LDQFGSCTRGTSHCRPLLPEEVQNIIKKIPEETRRWLSVRGYIPQDGFILSYLCVPPNCL 216
Query: 223 XXXXXXXXXXXXXXXXXXTFLRKLLRKVEVIRSSRSGEPNFESHQVEANDLQSVVDQYLQ 282
LRK LRK++ IR SR G N + QV A+DLQ V Y+
Sbjct: 217 RVSNVLDGNTFSCSGTSTNLLRKALRKIQQIRGSRIGSSNIQVDQV-ADDLQVDVANYIN 275
Query: 283 IRGCAKPARDIETHFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINE 342
+ G K G + S + W KMK+LFISK S FSSR VITGD Y +N
Sbjct: 276 LGGTTK-------GHGDDTFTSQPTAMQWKQKMKTLFISKSSSFSSRGVITGDPYIGLNV 328
Query: 343 VGIPHEIAQRITFEERVNSHNMCYLQKLVDENLCLAYKEGVS-TYSLREG----SKGHTY 397
VG+P E+A+R++ EE+V HN+ LQ ++++ LCL Y + S TYSL G +K HT
Sbjct: 329 VGVPEEVAKRMSVEEKVTDHNIAQLQDMMNKGLCLTYTDANSITYSLDAGKDNPNKKHTI 388
Query: 398 LKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGD 457
LK G+IV+RR+ DGDIVF+NRPP+T KHS++A V +H+DHT+KINPLIC PLGADFDGD
Sbjct: 389 LKVGEIVNRRVFDGDIVFLNRPPSTDKHSVEAFYVQVHNDHTIKINPLICDPLGADFDGD 448
Query: 458 CVHLFYPQSLAAKAEVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKKGFMDRAAA 517
CV +FYP+SL+A+AE EL++V+KQL+SSH + + +R A
Sbjct: 449 CVQIFYPRSLSARAEAKELYTVDKQLVSSHNGKLNFQFKNDFSLALKIMCGREYSER-EA 507
Query: 518 NQM--AMFLSLPLPQPALLKAGSGDCYWTSTQILQCALPLSFDCTGGRYLIRESDILGFD 575
NQ+ AMF S PQ L+ G YWT QIL+ S T +L RES
Sbjct: 508 NQITNAMFSSGMYPQKPLI----GGPYWTFPQILETT--KSNAITLADHLDRES------ 555
Query: 576 LGRDVLPAVINEIAASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHDFSISGAVK 635
V +S+ KGP+EA F ++LQP LME + + FS+ L DF++ +
Sbjct: 556 ----VGALATGTTISSILSTKGPREATEFLNLLQPLLMESLLIDCFSINLGDFTVPSPIL 611
Query: 636 RITDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQDIELPAIKFASKSSRLGDMIDSKSKS 695
N PL +L K+ + P + F + SS +G ++D KS S
Sbjct: 612 EAIQNN-----PL--------------ELNKYRE----PIMDFITHSSAIGLLVDPKSDS 648
Query: 696 ALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGD-GYPSAEYGLLKGCFF 754
++KV +Q+GFLG QL GRLYS L+ED S +C + P EYG ++ +
Sbjct: 649 NMNKVVEQLGFLGPQLQHNGRLYSSRLVEDCLSKSLHRCCGSTNCCNPLEEYGTVRSSIY 708
Query: 755 HGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSII 814
HGL+P+E L+HSI RE ++R+S+GL EPG+LFKN+M+ LRDV CYDG++R N ++
Sbjct: 709 HGLNPYEALLHSICEREKIMRASKGLVEPGSLFKNMMSRLRDVTACYDGSIRTSSGNLVL 768
Query: 815 QFEYGLKAGDNASYLFPAGEHVGVLAATAMSNPAYKAVLDASPSSNCSWELMKEILLCKV 874
QF +AS G+ VG+LAATA++N AYKAVL + ++ SW+ MKE+LL +
Sbjct: 769 QF-----GSRDASNCVTPGDPVGILAATAVANAAYKAVLAPNQNNIISWDSMKEVLLTRA 823
Query: 875 HFRNEPIDRRVILYLNDCDCGRSYCRENAAYAVKNQLRKVSLKDTAVDFIVEYQQQRKRK 934
+ + R+VILYLN C C + C E A ++ LR++ L+D + ++YQQQ
Sbjct: 824 STKADANHRKVILYLNQCSC-ENECMER-ALTIRACLRRIKLEDCTTEISIKYQQQ---- 877
Query: 935 GSEIDAGLVGHIHLDEVKLEELKINMAEVFQRCQEKL-DSFNRKRKFNQIFKRTELFFSE 993
++ LVGHIHLD+ +L +++ M V +CQE ++ +K +I K S
Sbjct: 878 ATQAAHHLVGHIHLDKKQLNQIETIMDSVLHKCQETFRNNIKKKGSMREILKTVTFISST 937
Query: 994 SCVSPN------FSAPCLTFIWPAGDGNDLHETTK----ILADTICPALLDTIIQGDPRI 1043
S + F CL F P ++ E+T+ + + I P +LDT+I+GDPR+
Sbjct: 938 SLCDQHTDDDKKFQVSCLQFFLPGSITKNISESTERVIDFMTNAIFPIILDTVIKGDPRV 997
Query: 1044 NSANIIWVNPDTNTWVRNPSKSSNGELALDIILEKESIKQNGDAWRIVLDSCLPVLHLID 1103
AN++ + P++ WV++ GE AL+I +E+ + ++G+AW + +++C+PV+ LID
Sbjct: 998 EEANLVRIEPESTFWVQSSGAEQKGEAALEITVEEAAAAESGNAWGVAMNACIPVMDLID 1057
Query: 1104 TRRSIPYAIKQIQELLGISCTFDQAIQRLAASVKMVAKGVLREHLILLASSMTCGGNLVG 1163
T RS+PY I+Q++ Q L+ SV M+ K VL+EHL +ASSMTC G+L G
Sbjct: 1058 TTRSMPYDIQQVR-------------QYLSKSVGMITKSVLQEHLTTVASSMTCTGDLHG 1104
Query: 1164 FNTGGYKALARQLNIQVPFTDATLFTPKRCFERAAEKCHTDSLSSIVASCSWGKPVAVGT 1223
FN GYKA + L +Q PF +ATL +CFE+AA K ++D L ++V++CSWG +GT
Sbjct: 1105 FNNSGYKATCQSLKVQAPFMEATLSRSIQCFEKAAAKAYSDQLGNVVSACSWGNNAEIGT 1164
Query: 1224 GSKFDVLWDAKEIKSND--LDGMDVYNFLHMVKS 1255
GS F++LW+ + + S+ L G +Y+FL V++
Sbjct: 1165 GSAFEILWNDENMSSSKSILGGYGLYDFLEAVET 1198
>M0XPZ5_HORVD (tr|M0XPZ5) DNA-directed RNA polymerase OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 1281
Score = 751 bits (1940), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 472/1289 (36%), Positives = 692/1289 (53%), Gaps = 176/1289 (13%)
Query: 340 INEVGIPHEIAQRITFEERVNSHNMCYLQKLVDENLCLAYKEGVS-TYSLREG--SKGHT 396
+N VG+P E+A+R++ +E V +N+ LQ ++D LCL +K+ S T+SL G +K T
Sbjct: 1 MNVVGVPDEVARRMSVQEHVTDYNIAQLQDMMDRGLCLTHKDANSITHSLDVGKENKKRT 60
Query: 397 YLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDG 456
LK G+ V+RRI+DGD+VFINRPP+T KHS+QA+ V +H DHT+KINPLICGPLGADFDG
Sbjct: 61 ILKVGETVNRRILDGDVVFINRPPSTDKHSVQAMYVRVHTDHTIKINPLICGPLGADFDG 120
Query: 457 DCVHLFYPQSLAAKAEVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKKGFMDRAA 516
DCVH+F+P+S++A+AE +ELF VEKQL+SSH + + R
Sbjct: 121 DCVHIFFPRSVSARAEAMELFMVEKQLVSSHNEKLNFRLKNDCLLALKKISGRKY-SRRE 179
Query: 517 ANQM--AMFLSLPLPQPALLKAGSGDCYWTSTQILQCALPLSFDCTGGRYLIRESDILGF 574
ANQ+ AMF +P+ L SG W+ QIL+ LP E+ IL
Sbjct: 180 ANQLMNAMFTGGLIPKKRL----SGGPEWSFAQILETVLP------------EENKILIR 223
Query: 575 DLGRDVLPAVINEIAASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHDFSISGAV 634
DL + +SV K P+EA+ F ++LQP LME +F++GFSV L DF+ +
Sbjct: 224 DLAAGTV------TISSVLSTKNPKEAIEFLNLLQPLLMESLFTDGFSVSLRDFNFHNPI 277
Query: 635 KRITDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQDIELPAIKFASKSSRLGDMIDSKSK 694
+ T + L +L K + D+ SS + ++D KS
Sbjct: 278 PQTTQ----------------HQTLDLDKLRKPIVDL--------VTSSDIRFLVDQKSD 313
Query: 695 SALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDG-YPSAEYGLLKGCF 753
SA+ K+ +QIGFLG QL GRLYS L+ED S KC +G +P +G ++ F
Sbjct: 314 SAMTKIVEQIGFLGHQLQRNGRLYSSSLVEDCLSKSLSKCGSSTNGCHPLEAHGFVRNSF 373
Query: 754 FHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSI 813
++GL+P+E+L+HSIS RE +R+S+GL EPG LFKN+MA+LRDVV CYDG++RN C NSI
Sbjct: 374 WNGLNPYEDLLHSISAREKTIRASKGLVEPGDLFKNMMAMLRDVVACYDGSIRNSCGNSI 433
Query: 814 IQFEYGLKAGDNASYLFPAGEHVGVLAATAMSNPAYKAVLDASPSSNCSWELMKEILLCK 873
I+F+ N+S G+ VG+LAATA++N AYKAVLD + ++ SW+ MKE+LL +
Sbjct: 434 IKFDL-----TNSSSSVTPGDPVGILAATAVTNAAYKAVLDPNQNNMTSWDSMKEVLLTR 488
Query: 874 VHFRNEPIDRRVILYLNDCDCGRSYCRENAAYAVKNQLRKVSLKDTAVDFIVEYQQQRKR 933
RNE D+++ILYLN C CG ++C E A+ AV+ L++ ++D A +F ++YQQQ
Sbjct: 489 ASSRNEN-DKKIILYLNKCSCGNNFCMERASLAVQACLKRTKVEDCATEFSIQYQQQ--- 544
Query: 934 KGSEIDAGLVGHIHLDEVKLEELKINMAEVFQRCQEKLDSFNRKR-KFNQIFKRTELFFS 992
+ LVGHIHLD+ +L+E+ I+M ++ Q+CQE++ +K+ + NQ+ KR + S
Sbjct: 545 -NIQATHCLVGHIHLDKKQLDEMNISMEDILQKCQEEIYRCGKKKGQANQLMKRVAVISS 603
Query: 993 ESCVSPNFS----APCLTFIWPAGDGNDLHETT----KILADTICPALLDTIIQGDPRIN 1044
E + CL F + E++ +++A+TI P LLDT+I+GD R+
Sbjct: 604 ECMCYQDADDKERVSCLQFFLTESVTTKMSESSARVVQMMANTISPILLDTMIKGDKRVQ 663
Query: 1045 SANIIWVNPDTNTWVRNPSKSSNGELALDIILEKESIKQNGDAWRIVLDSCLPVLHLIDT 1104
NI+WV P WV+N K GELAL + ++K S ++GD W +D+C+PV+ LIDT
Sbjct: 664 EVNIVWVEPQETCWVQNSGKEQKGELALVVTMDKNSTGESGDVWGTAMDACIPVMDLIDT 723
Query: 1105 RRSIPYAIKQIQELLGISCTFDQAIQRLAASVKMVAKGVLREHLILLASSMTCGGNLVGF 1164
RS+PY+I+Q+Q++ GIS F + Q L+ +V MV K VL EH +ASSMTC GNL GF
Sbjct: 724 TRSVPYSIQQVQQVFGISSAFGRVTQHLSKAVGMVTKSVLEEHRTTVASSMTCTGNLHGF 783
Query: 1165 NTGGYKALARQLNIQVPFTDATLFTPKRCFERAAEKCHTDSLSSIVASCSWGKPVAVGTG 1224
N+ GYKA + L IQ PF ATL P +CFE AEK ++D L S+V++CSWG P +GTG
Sbjct: 784 NSYGYKATFKSLKIQAPFMKATLARPLQCFEEGAEKVYSDQLDSVVSTCSWGNPAPIGTG 843
Query: 1225 SKFDVLWDAKEIKSN--DLDGMDVYNFLHMVKSLTNGEEENNACXXXXXXXXXXXXNADY 1282
S F + W+ + +L G +Y FL V++ T E+N Y
Sbjct: 844 SAFKIHWNDGNTSAGNENLGGYGLYEFLAEVEA-TRATEDNII--------------VPY 888
Query: 1283 SLSPQHTSGV--DAVFEETFEAMNGPESNGWGSNTDRTETNSTQWSAWESNKAETKDGGS 1340
S + D + E+ + G W TDR ++N
Sbjct: 889 SSCLYDVDNLQDDEIEEDGILRLGGNSPIAW---TDRPQSN------------------- 926
Query: 1341 QRVHEDSWTSRDVMKDDSQMTNAWDGNVEQTKTISNDWTAWGKNKSEIQDNVAEKAEGEC 1400
++ D Q + A G+ QT ++N W K +VA K+ G
Sbjct: 927 ------------LLLQDLQGSRAEQGH--QTVPVAN----WRHGK-----HVATKSSGTS 963
Query: 1401 GSSEKWKTAVIQEGSSKSNAWKSNIEQRSDEDSWTSQKLKADVIQDSSKPSSWGAKPKSN 1460
G ++ T + + +++ S+ Q+ SW KA V + PSS+ S+
Sbjct: 964 GWNQSSCTMKVYQRRQRNSNPSSDATQQDGNPSWN----KAYV----AGPSSFAITGPSS 1015
Query: 1461 DSSNWGRNKDEIQDVVSRRAEDDSWSSKKQLSSDATQED---SSKFSFWGGNKD---TTK 1514
+S W ++ + V +R D +W SSD TQ+D S K + G + T
Sbjct: 1016 GTSGWNQSSSTTK-VYQKRQLDSNW------SSDETQQDGNPSCKKANVAGQSNFAITGA 1068
Query: 1515 PKSNDWSSWGGNRDGI---------QDGGSKRAQDDSWSSQKDVTRES-----SSKVDAW 1560
S+ WS N + GS R + W +Q+ T + S +
Sbjct: 1069 SSSDGWSRKNNNLGRGRGGGRGAVWKSEGSHRGGNSRWKAQRANTTSAPNFRISGPSNYG 1128
Query: 1561 GANNEASNP-----KSNDWSAWGKNKDGT 1584
G N + NP + W + G N+ G+
Sbjct: 1129 GRNIKTGNPGPYRGRGAAWRSNGPNRGGS 1157
>B8A9M1_ORYSI (tr|B8A9M1) DNA-directed RNA polymerase OS=Oryza sativa subsp. indica
GN=OsI_05331 PE=3 SV=1
Length = 1465
Score = 696 bits (1795), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/1087 (38%), Positives = 603/1087 (55%), Gaps = 142/1087 (13%)
Query: 183 EVMEMIKRFPLETKKKLAGKGYFPQDGYVIKYLPVPPNCLXXXXXXXXXXXXXXXXXXTF 242
+V +IK+ P ET++ L+ +GY PQDG+++ YL VPPNCL
Sbjct: 176 KVQNIIKKIPEETRRWLSVRGYIPQDGFILSYLCVPPNCLRVSNVLDGNTFSCSGTSTNL 235
Query: 243 LRKLLRKVEVIRSSRSGEPNFESHQVEANDLQSVVDQYLQIRGCAKPARDIETHFGVNKE 302
LRK LRK++ IR SR G N + QV A+DLQ V Y+ + G K G +
Sbjct: 236 LRKALRKIQQIRGSRIGSSNIQVDQV-ADDLQVDVANYINLGGTTK-------GHGDDTF 287
Query: 303 LSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSH 362
S + W KMK+LFISK S FSSR VITGD Y +N VG+P E+A+R++ EE+V H
Sbjct: 288 TSQPTAMQWKQKMKTLFISKSSSFSSRGVITGDPYIGLNVVGVPEEVAKRMSVEEKVTDH 347
Query: 363 NMCYLQKLVDENLCLAYKEGVS-TYSLREG----SKGHTYLKPGQIVHRRIMDGDIVFIN 417
N+ LQ ++++ LCL Y + S TYSL G +K HT LK G+IV+RR+ DGDIVF+N
Sbjct: 348 NIAQLQDMMNKGLCLTYTDANSITYSLDAGKDNPNKKHTILKVGEIVNRRVFDGDIVFLN 407
Query: 418 RPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELF 477
RPP+T KHS++A V +H+DHT+KINPLIC PLGADFD DCV +FYP+SL+A+AE EL+
Sbjct: 408 RPPSTDKHSVEAFYVQVHNDHTIKINPLICDPLGADFDDDCVQIFYPRSLSARAEAKELY 467
Query: 478 SVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKKGFMDRAAANQM--AMFLSLPLPQPALLK 535
+V+KQL+SSH + + +R A NQ+ AMF S PQ L+
Sbjct: 468 TVDKQLVSSHNGKLNFQFKNDFSLALKIMCGREYSEREA-NQITNAMFSSGMYPQKPLI- 525
Query: 536 AGSGDCYWTSTQILQCALPLSFDCTGGRYLIRESDILGFDLGRDVLPAVINEIAASVFFG 595
G YWT QIL+ S T +L RES V +S+
Sbjct: 526 ---GGPYWTFPQILETTK--SNAITLADHLDRES----------VGALATGTTISSILST 570
Query: 596 KGPQEALNFFDVLQPFLMECIFSNGFSVGLHDFSISGAVKRITDRNIGKVSPLLYQLRFI 655
KGP+EA F ++LQP LME + +GFS+ L DF++ + N PL
Sbjct: 571 KGPREATEFLNLLQPLLMESLLIDGFSINLGDFTVPSPILEAIQNN-----PL------- 618
Query: 656 YNELVAQQLEKHMQDIELPAIKFASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRG 715
+L K+ + P + F + SS +G ++D KS S ++KV +Q+GFLG QL G
Sbjct: 619 -------ELNKYRE----PIMDFITHSSAIGLLVDPKSDSNMNKVVEQLGFLGPQLQHNG 667
Query: 716 RLYSKGLLEDVASHFKLKCDYDGDG-YPSAEYGLLKGCFFHGLDPFEELVHSISTREIMV 774
RLYS L+ED S +C + P E+G ++ +HGL+P+E L+HSI RE ++
Sbjct: 668 RLYSSRLVEDCLSKSLHRCCGSTNCCNPLEEHGTVRSSIYHGLNPYEALLHSICEREKIM 727
Query: 775 RSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGLKAGDNASYLFPAGE 834
R+S+GL EPG+LFKN+M+ LRDV CYDG++R N ++QF +AS G+
Sbjct: 728 RASKGLVEPGSLFKNMMSRLRDVTACYDGSIRTSSGNLVLQF-----GSRDASNCVTPGD 782
Query: 835 HVGVLAATAMSNPAYKAVLDASPSSNCSWELMKEILLCKVHFRNEPIDRRVILYLNDCDC 894
VG+LAATA++N AYKAVL + ++ SW+ MKE+LL + + + R+VILYLN C C
Sbjct: 783 PVGILAATAVANAAYKAVLAPNQNNIISWDSMKEVLLTRASTKADANHRKVILYLNQCSC 842
Query: 895 GRSYCRENAAYAVKNQLRKVSLKDTAVDFIVEYQQQRKRKGSEIDAGLVGHIHLDEVKLE 954
+ C E A ++ LR+ +KLE
Sbjct: 843 -ENECMERA-LTIRACLRR-------------------------------------IKLE 863
Query: 955 ELKINMAEVFQRCQEKLDSFNRKRKFNQIFKRTELFFSESCVSPNFSAPCLTFIWPAGDG 1014
+ ++ C + D F CL F PA
Sbjct: 864 DCTTEISINTSLCDQHTDD-----------------------DQEFRVSCLQFFLPASIT 900
Query: 1015 NDLHETTK----ILADTICPALLDTIIQGDPRINSANIIWVNPDTNTWVRNPSKSSNGEL 1070
++ E+T+ + + I P +LDT+I+GDPR+ AN++ + P++ WV++ GE+
Sbjct: 901 KNISESTERVIDFMTNAIFPIILDTVIKGDPRVEEANLVRIEPESTFWVQSSGAEQKGEV 960
Query: 1071 ALDIILEKESIKQNGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQIQELLGISCTFDQAIQ 1130
AL+I +EK + ++G+AW + +D+C+PV+ LIDT RS+PY I+Q++ Q
Sbjct: 961 ALEITVEKAAAAESGNAWGVAMDACIPVMDLIDTTRSMPYDIQQVR-------------Q 1007
Query: 1131 RLAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDATLFTP 1190
L+ SV M+ K VL+EHL +ASSMTC G+L GFN GYKA + L +Q PF +ATL
Sbjct: 1008 YLSKSVGMITKSVLQEHLTTVASSMTCTGDLHGFNNSGYKATCQSLKVQAPFMEATLSRS 1067
Query: 1191 KRCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSKFDVLWDAKEIKSND--LDGMDVYN 1248
+CFE+AA K ++D L ++V++CSWG +GTGS F++LW+ + + S+ L G +Y+
Sbjct: 1068 IQCFEKAAAKAYSDQLGNVVSACSWGNNTEIGTGSAFEILWNDENMSSSKSILGGYGLYD 1127
Query: 1249 FLHMVKS 1255
FL V++
Sbjct: 1128 FLEAVET 1134
Score = 85.5 bits (210), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/64 (56%), Positives = 48/64 (75%), Gaps = 7/64 (10%)
Query: 45 NPFLGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKM 104
NP+LGLPL+ G +CEGHFG+IELP+PI+HPSHV+EL ++L+L+CL CLK+
Sbjct: 120 NPYLGLPLQVG-------DAIEECEGHFGFIELPMPIFHPSHVTELSQILNLICLRCLKI 172
Query: 105 KKTK 108
K K
Sbjct: 173 KNRK 176
>K7USA4_MAIZE (tr|K7USA4) DNA-directed RNA polymerase OS=Zea mays
GN=ZEAMMB73_731449 PE=3 SV=1
Length = 554
Score = 592 bits (1527), Expect = e-166, Method: Compositional matrix adjust.
Identities = 288/557 (51%), Positives = 392/557 (70%), Gaps = 3/557 (0%)
Query: 315 MKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLVDEN 374
M++LFISKGSGFSSRSV+TGD Y + VG+P E+A+R+TFEE+V N+ LQ +VD+
Sbjct: 1 MRTLFISKGSGFSSRSVLTGDPYIGLGVVGLPSEVAKRMTFEEQVTDININRLQDVVDKG 60
Query: 375 LCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALVVYI 434
LCL Y++G +TY++ GSKG+T LK GQ + RRI+DGD+VF+NRPP+THKHSLQA Y+
Sbjct: 61 LCLTYRDGQATYAITVGSKGYTTLKVGQTISRRIVDGDVVFLNRPPSTHKHSLQAFYAYV 120
Query: 435 HDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHXXXXXXX 494
HDDHTVKINPL+CGP ADFDGDCVH++YPQSLAAKAE +ELFSVE+QL+SSH
Sbjct: 121 HDDHTVKINPLMCGPFSADFDGDCVHIYYPQSLAAKAEALELFSVERQLISSHSGKVNLQ 180
Query: 495 XXXXXXXXXXXXVKKGFMDRAAANQMAMFLSLPLPQPALLKAGSGDCYWTSTQILQCALP 554
+ + ANQ+AMF+ L PA++K WT +QI+Q A P
Sbjct: 181 LGNDSLVAMKAMSHTTMLHKELANQLAMFVPFSLLAPAVIKPVPS---WTISQIVQGAFP 237
Query: 555 LSFDCTGGRYLIRESDILGFDLGRDVLPAVINEIAASVFFGKGPQEALNFFDVLQPFLME 614
+ C G +L+R+S I+ DLG++ + ++ +S+ KGP+EAL F +VL+P LME
Sbjct: 238 ANLTCQGDTHLVRDSTIIRLDLGKESVQDSFPDLVSSILREKGPKEALQFLNVLEPLLME 297
Query: 615 CIFSNGFSVGLHDFSISGAVKRITDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQDIELP 674
+ +G S+ L DF++ A+ ++I S +L Q R ++ V ++E ++++++
Sbjct: 298 FLLLDGLSISLRDFNVPKALLEEAQKDIRNQSLILEQSRCSTSQFVEFRVENNLKNVKQQ 357
Query: 675 AIKFASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKC 734
K S LG +ID K ++++ KV QQ+GF+G QL+ G+LYS+ L+ED ++F K
Sbjct: 358 ISDSVGKFSDLGLLIDPKKEASMSKVVQQVGFVGLQLYREGKLYSRRLVEDCFTNFVNKH 417
Query: 735 DYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAIL 794
GD YP YGL++ +FHGL+P+EEL+H+ISTRE M+RSSRGLSEPGTLFKNLMAIL
Sbjct: 418 LAIGDEYPPEAYGLVQSSYFHGLNPYEELIHAISTREAMIRSSRGLSEPGTLFKNLMAIL 477
Query: 795 RDVVVCYDGTVRNVCSNSIIQFEYGLKAGDNASYLFPAGEHVGVLAATAMSNPAYKAVLD 854
RDVV+CYDGTVRN+CSNSIIQ +YG ++S + P GE VGVLAATA+SNPAYKAVLD
Sbjct: 478 RDVVICYDGTVRNICSNSIIQLKYGEDDETDSSSVVPPGEPVGVLAATAISNPAYKAVLD 537
Query: 855 ASPSSNCSWELMKEILL 871
+S S+N SWE MK ++L
Sbjct: 538 SSQSNNASWESMKVVML 554
>C5XUR7_SORBI (tr|C5XUR7) DNA-directed RNA polymerase OS=Sorghum bicolor
GN=Sb04g003760 PE=3 SV=1
Length = 554
Score = 589 bits (1519), Expect = e-165, Method: Compositional matrix adjust.
Identities = 290/557 (52%), Positives = 387/557 (69%), Gaps = 3/557 (0%)
Query: 315 MKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLVDEN 374
M++LFISKGSGFSSRSV+TGD Y + VG+P E+A+R+TFEE+V N+ LQ++VD+
Sbjct: 1 MRTLFISKGSGFSSRSVLTGDPYIGLGVVGLPSEVAKRMTFEEQVTDININRLQEVVDKG 60
Query: 375 LCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALVVYI 434
LCL Y++G +TY++ GSKGHT LK GQ + RRI+DGD+VF+NRPP+THKHSLQA Y+
Sbjct: 61 LCLTYRDGQATYAITVGSKGHTTLKVGQTISRRIVDGDVVFLNRPPSTHKHSLQAFYAYV 120
Query: 435 HDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHXXXXXXX 494
HDDHTVKINPL+CGP ADFDGDCVH++YPQSLAAKAE +ELFSVE+QL+SSH
Sbjct: 121 HDDHTVKINPLMCGPFSADFDGDCVHIYYPQSLAAKAEALELFSVERQLISSHSGKVNLQ 180
Query: 495 XXXXXXXXXXXXVKKGFMDRAAANQMAMFLSLPLPQPALLKAGSGDCYWTSTQILQCALP 554
+ + + ANQ+AMF+ L PA++K WT TQI+Q ALP
Sbjct: 181 LGNDCLVAMKAMSDRTVLHKELANQLAMFVPFSLLAPAVMKPIPS---WTITQIVQGALP 237
Query: 555 LSFDCTGGRYLIRESDILGFDLGRDVLPAVINEIAASVFFGKGPQEALNFFDVLQPFLME 614
C G +L+R+S I+ DL ++ + ++ +S+ KGP+EAL F +VL+P LME
Sbjct: 238 AKLTCQGDTHLVRDSTIIKLDLDKESVQDSFPDLVSSILREKGPREALQFLNVLEPLLME 297
Query: 615 CIFSNGFSVGLHDFSISGAVKRITDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQDIELP 674
+ G S+ L DF++ A+ +NI S +L Q R ++ V ++E +++ ++
Sbjct: 298 FLVLGGLSISLRDFNVPKALLEEAQKNIQNQSLVLEQSRCSTSQFVELRVENNLKSVKQQ 357
Query: 675 AIKFASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKC 734
+ K S LG +ID K ++++ KV QQ+GF+G QL+ G+LYS+ L+ED S F K
Sbjct: 358 ISDYVGKFSGLGLLIDPKKEASMAKVVQQVGFVGLQLYREGKLYSRRLVEDCFSSFVNKH 417
Query: 735 DYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAIL 794
GD Y +GL++ +FHGL+P+EELVH+I TRE M+RSSRGLSEPGTLFKNLMAIL
Sbjct: 418 SAIGDEYSPEAFGLVQSSYFHGLNPYEELVHAICTRETMIRSSRGLSEPGTLFKNLMAIL 477
Query: 795 RDVVVCYDGTVRNVCSNSIIQFEYGLKAGDNASYLFPAGEHVGVLAATAMSNPAYKAVLD 854
RDVV+CYDGTVRN+CSNSIIQ +YG ++S P GE VGVLAATA+SNPAYKAVLD
Sbjct: 478 RDVVICYDGTVRNICSNSIIQLKYGEDDEADSSSAVPPGEPVGVLAATAISNPAYKAVLD 537
Query: 855 ASPSSNCSWELMKEILL 871
+S S+N SWE MK + L
Sbjct: 538 SSQSNNASWESMKVVKL 554
>Q0E3V3_ORYSJ (tr|Q0E3V3) DNA-directed RNA polymerase (Fragment) OS=Oryza sativa
subsp. japonica GN=Os02g0152800 PE=2 SV=1
Length = 488
Score = 534 bits (1376), Expect = e-148, Method: Compositional matrix adjust.
Identities = 258/487 (52%), Positives = 338/487 (69%), Gaps = 3/487 (0%)
Query: 2 EENPTLSFLDGNVVGIQFGMATRQEICTXXXXXXXXXXXXXXXNPFLGLPLEYGRCESCG 61
E+ + +G + I+ ++T EI T NPFLGLPLE G+CESCG
Sbjct: 3 EDQSAIPVAEGAIKSIKLSLSTEDEIRTYSINDCPVTHPSQLGNPFLGLPLETGKCESCG 62
Query: 62 TSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKMKKTKFPSSSSGLAQRLL 121
SE GKCEGHFGYIELPVPIYHP HV+EL+++L++VCL CL++KK K + L
Sbjct: 63 ASENGKCEGHFGYIELPVPIYHPCHVTELRQILNVVCLKCLRVKKGKVKQTEGKDNTSAL 122
Query: 122 SPCCQEPNAAQVSIREVKTGDGACYLVLKVSKSK-MQDGFWRFLDKYGYRYE-VDHTRAL 179
S C + +S++E+KT DGA L LK+ K M +G W FLDKYG+ + H R L
Sbjct: 123 S-CYYCRDLPALSLKEIKTADGAFRLELKMPPRKFMTEGSWNFLDKYGFHHGGTSHCRTL 181
Query: 180 LPCEVMEMIKRFPLETKKKLAGKGYFPQDGYVIKYLPVPPNCLXXXXXXXXXXXXXXXXX 239
LP E + ++K+ P ETK+KLA +GY Q GYV+KYLPVPPNCL
Sbjct: 182 LPEEALNILKKIPEETKRKLAARGYIAQSGYVMKYLPVPPNCLYIPEFTDGQSIMSYDIS 241
Query: 240 XTFLRKLLRKVEVIRSSRSGEPNFESHQVEANDLQSVVDQYLQIRGCAKPARDIETHFGV 299
+ L+K+L+K+E I+ SR+G PNFESH+VE+ DLQ + QY+ +RG + +D F +
Sbjct: 242 ISLLKKVLQKIEQIKKSRAGSPNFESHEVESCDLQLSIAQYIHLRGTTRGPQDNTKRFAI 301
Query: 300 NKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERV 359
+ + S S K WL+KM++LFISKGSGFSSRSV+TGD Y ++ +G+P E+A+RITFEE+V
Sbjct: 302 STDPSALSTKQWLEKMRTLFISKGSGFSSRSVLTGDPYIGVDVIGLPSEVAKRITFEEQV 361
Query: 360 NSHNMCYLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRP 419
N+ LQ++VD+ LCL Y++G +TY++ GSKGHT LK GQ + RRI+DGD+VF+NRP
Sbjct: 362 TDINLNRLQEIVDKGLCLTYRDGQATYAITVGSKGHTTLKVGQTISRRIVDGDVVFLNRP 421
Query: 420 PTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSV 479
P+THKHSLQA VY+H+DHTVKINPLIC P ADFDGDCVH++YPQSLAAKAE +ELFSV
Sbjct: 422 PSTHKHSLQAFRVYVHEDHTVKINPLICAPFAADFDGDCVHIYYPQSLAAKAEALELFSV 481
Query: 480 EKQLLSS 486
EKQL SS
Sbjct: 482 EKQLTSS 488
>M8ASR8_AEGTA (tr|M8ASR8) DNA-directed RNA polymerase II subunit RPB1 OS=Aegilops
tauschii GN=F775_23122 PE=4 SV=1
Length = 817
Score = 494 bits (1272), Expect = e-136, Method: Compositional matrix adjust.
Identities = 268/578 (46%), Positives = 371/578 (64%), Gaps = 22/578 (3%)
Query: 414 VFINR-PPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAE 472
+FI++ P+THKHSLQAL V IH HTVKINPL+C P GADFDGDCV +FYPQS +AK E
Sbjct: 251 LFISKVSPSTHKHSLQALNVCIHHGHTVKINPLLCYPYGADFDGDCVQIFYPQSQSAKIE 310
Query: 473 VVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKKGFMDRAAANQMAMFLSLPLPQPA 532
+ELFSVEKQL SSH + + + +ANQ+AM LSL L PA
Sbjct: 311 ALELFSVEKQLSSSHSGRLNLQLTNDSLLALKLMSSRTMLSKESANQLAMLLSLSLNAPA 370
Query: 533 LLKAGSGDCYWTSTQILQCALPLSFDCTGGRYLIRESDILGFDLGRDVLPAVINEIAASV 592
+++ C T T+I+Q ALP C G +S ++ DL ++ + A +++ +S+
Sbjct: 371 VIQPK--PC-CTITKIIQSALPAELTCEG------DSTVIKLDLEKESVQASFSDLVSSI 421
Query: 593 FFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHDFSISGAVKRITDRNIGKVSPLLYQL 652
KGP +AL F + LQP ME + +GFS+ L DFS+ + I + S + Q
Sbjct: 422 ICVKGPGDALKFLNALQPLFMEFLLLDGFSLTLQDFSVPKLLLEGAQECIKEQSSVFEQS 481
Query: 653 RFIYNELVAQQLEKHMQDIELPAIKFASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLF 712
R + + ++ ++++I+ F KSSRLG ++D KS ++ KV QQ+GF+G QL+
Sbjct: 482 RRCFK---SHSVDYNLKNIKEKISNFVVKSSRLGLLVDPKSDPSMSKVVQQLGFVGLQLY 538
Query: 713 VRGRLYSKGLLEDVASHFKLKCDYDGDGYPSA--EYGLLKGCFFHGLDPFEELVHSISTR 770
G+LYS L+E S+F + G+G A YGL++ +FHGL+P+EELVH+ISTR
Sbjct: 539 HEGKLYSGRLVESCFSNFVNRHPPIGEGIQHAPEAYGLVQSSYFHGLNPYEELVHAISTR 598
Query: 771 EIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGLKAGDNASYLF 830
E +VRSSRGL E GTLFK LMAILRDVVVCYDGTVRN+CSNSI+Q +Y ++ S +
Sbjct: 599 ETIVRSSRGLPEAGTLFKGLMAILRDVVVCYDGTVRNICSNSIMQLKYK----EDPSAIT 654
Query: 831 PAGEHVGVLAATAMSNPAYKAVLDASPSSNCSWELMKEILLCKVHFRNEPIDRRVILYLN 890
P GE VG LAATA+SNPAYK+VLDAS S+N SWELMKEIL KV ++N+ +R+VIL+LN
Sbjct: 655 P-GEPVGALAATAISNPAYKSVLDASQSNNTSWELMKEILQTKVSYKNDAKNRKVILFLN 713
Query: 891 DCDCGRSYCRENAAYAVKNQLRKVSLKDTAVDFIVEYQQQRKRKG-SEIDAGLVGHIHLD 949
DC C + +C+E AA AV+ L++V+L+D D +EYQ+Q KG SE VGHIHL+
Sbjct: 714 DCSCPKKFCKEKAAIAVQGCLKRVTLEDCTTDICIEYQKQVSLKGTSEATPAFVGHIHLE 773
Query: 950 EVKLEELKINMAEVFQRCQEKLDSF-NRKRKFNQIFKR 986
+ LE++ ++ ++ +CQE N+K +FK+
Sbjct: 774 KEHLEQINVSTDDILWKCQEVSGKHGNKKGTLGLLFKK 811
Score = 117 bits (294), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 58/142 (40%), Positives = 83/142 (58%), Gaps = 1/142 (0%)
Query: 183 EVMEMIKRFPLETKKKLAGKGYFPQDGYVIKYLPVPPNCLXXXXXXXXXXXXXXXXXXTF 242
+ ++K+ P +T++KLA +GY Q GYV+KYLPVPPNCL +
Sbjct: 117 QAFNILKKIPDDTRRKLAARGYIAQSGYVMKYLPVPPNCLYNPEFTDGQSLKSNAISISL 176
Query: 243 LRKLLRKVEVIRSSRSGEPNFESHQVEANDLQSVVDQYLQIRGCAKPARDIETHFGVNKE 302
K+L K+E + S SG PNFES+ E+ +LQ + QY+Q RG K + + F + +
Sbjct: 177 FGKILEKIEKTKESASGSPNFESYDTESTELQFSIGQYIQARGTTKVPQGAK-RFAASTD 235
Query: 303 LSDASNKAWLDKMKSLFISKGS 324
S +S K WL+KMK+LFISK S
Sbjct: 236 SSHSSTKEWLEKMKTLFISKVS 257
>B9GWY0_POPTR (tr|B9GWY0) Predicted protein (Fragment) OS=Populus trichocarpa
GN=POPTRDRAFT_758152 PE=4 SV=1
Length = 1020
Score = 459 bits (1180), Expect = e-126, Method: Compositional matrix adjust.
Identities = 252/529 (47%), Positives = 324/529 (61%), Gaps = 60/529 (11%)
Query: 927 YQQQRKRKGSEIDAGLVGHIHLDEVKLEELKINMAEVFQRCQEKLDSFNRKRKFNQIFKR 986
Y+ Q+ + DAGLVGH+HLD+ KL++L I + ++CQE +++F +K+K +FK+
Sbjct: 1 YKSQQIPESFGSDAGLVGHVHLDKRKLQDLNITAQVILEKCQETVNTFRKKKKVGNLFKK 60
Query: 987 TELFFSESCVSPNF--SAPCLTFIWPAGDGNDLHETTKILADTICPALLDTIIQ------ 1038
T L SESC +PCL F W D L T+ ILAD ICP LL+TII+
Sbjct: 61 TILLVSESCSFQQCIDESPCLMFFWQGADDVHLERTSNILADMICPVLLETIIKVYIGLT 120
Query: 1039 ----------------------GDPRINSANIIWVNPDTNTWVRNPSKSSNGELALDIIL 1076
GD RI+ ANIIW P+TNTW+RNPS++ GELALDI+L
Sbjct: 121 ISIRHSVQRGSKRTWCSSINACGDHRISCANIIWATPETNTWIRNPSRTQKGELALDIVL 180
Query: 1077 EKESIKQNGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQIQELLGISCTFDQAIQRLAASV 1136
EK +K++GDAWRIVLDSCLPVLHLI+T RSIPYAIKQ+QELLG+SC FD A+QRL+ SV
Sbjct: 181 EKSVVKKSGDAWRIVLDSCLPVLHLINTTRSIPYAIKQVQELLGVSCAFDTAVQRLSKSV 240
Query: 1137 KMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDATLFTPKRCFER 1196
MVAKGVL+EHLILL +SMTC G+L+GF TGGYK L+R L+IQVPFT+ATLFTP++CFE+
Sbjct: 241 TMVAKGVLKEHLILLGNSMTCAGSLIGFYTGGYKTLSRSLDIQVPFTEATLFTPRKCFEK 300
Query: 1197 AAEKCHTDSLSSIVASCSWGKPVAVGTGSKFDVLWDAKEIKSNDLDGMDVYNFLHMVKSL 1256
AAEKCHTDSLSSIVASC+WGK V VGTGS FDVLWD KE N MDVY+FL+MV+S
Sbjct: 301 AAEKCHTDSLSSIVASCAWGKHVTVGTGSHFDVLWDTKEACLNPEGSMDVYSFLNMVRST 360
Query: 1257 TNGEEENNACXXXXXXXXXXXXNADYSLSPQHTSGVD-AVFEETFEAM----NGPESNGW 1311
GEE AC + D++LSP+H S D FE++ E N P + W
Sbjct: 361 AGGEESVTAC-LGAEVDDLMLEDEDWNLSPEHNSSSDKPTFEDSAEFQDFLGNQPAESNW 419
Query: 1312 ---GSNTDRTETNSTQWSAWESNKAETKDGGSQRVHEDSWT-SRDVMKDDSQMTNAWDG- 1366
S DR+ ++ W+ +K DG V E W+ + + + ++ WD
Sbjct: 420 EKISSLKDRSRSSGN----WDVDK---NDGA---VKEKPWSLGMNTAEANDVASSGWDTA 469
Query: 1367 ---------NVEQTKTISNDWTAWGKNKSEIQDNVAEKAEGECGSSEKW 1406
N E SN ++ W K E + A K + E +S W
Sbjct: 470 AARTTNNSWNSENNVAQSNSFSGWATKKPEPHNGFATKVQEEPTTSNDW 518
>A9SIX8_PHYPA (tr|A9SIX8) DNA-directed RNA polymerase OS=Physcomitrella patens
subsp. patens GN=NRPDA1501 PE=3 SV=1
Length = 2458
Score = 416 bits (1070), Expect = e-113, Method: Compositional matrix adjust.
Identities = 332/1187 (27%), Positives = 528/1187 (44%), Gaps = 149/1187 (12%)
Query: 129 NAAQVSIREVKTGDGACYLVLKVSKSKMQDGFWRFLDKYGY--RYEVDHTRALLPCEVME 186
+ +Q+ + EV+ D K K + FW F+ Y EV + L P E +
Sbjct: 518 DVSQIILLEVQGSD-------KGEKFLLPHDFWSFIKGAAYPENEEVPKSHVLSPLEALS 570
Query: 187 MIKRFPLETKKKLAGKGYFPQ-DGYVIKYLPVPPNCLXXXXXXXXXXXXX----XXXXXT 241
++K+ KL G + +G ++K +P+PPNC
Sbjct: 571 ILKKISDTAIGKLGMNGLVARPEGLIMKCVPIPPNCTRTTDYKYVSNTTAVRFGTDRVTR 630
Query: 242 FLRKLLRKVEVIRSSRSGEPNFESHQVEANDLQSVVDQYLQIRGCAKPARDIET-HFGVN 300
L+ L+ ++ I+ +R+G+ + E LQ + +YL+ +G K E N
Sbjct: 631 TLQNLVNEIGRIQRTRTGKIMKRGQRDEVKVLQVLTAEYLREKGAPKAVPGKEPLKKDRN 690
Query: 301 KELSDASNKAWL-DKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERV 359
+ + W D + ++ KG +++R+V+ GD I +G+P EIAQ++T ER
Sbjct: 691 GRFTKQDDHRWTKDWISQNYLGKGGNYTARAVVAGDPSLAIETIGVPLEIAQKLTVPERA 750
Query: 360 NSHNMCYLQKLVDENLCLAYKEGV--STYSLRE-------GSKGHTYLKPGQIVHRRIMD 410
N LQ+ VD L G +T +R + HT ++ G ++HR I D
Sbjct: 751 TKWNRSKLQEYVDRTQMLQQGSGKPGATRIVRNEEAFQVWANSTHT-VQIGDVIHRNIQD 809
Query: 411 GDIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAK 470
GD V++NRPP+ HKHSL AL V +H + INPL+C P ADFDGD H+F PQSL A
Sbjct: 810 GDFVYVNRPPSVHKHSLMALKVQVHYGLVLTINPLVCPPFNADFDGDIFHVFIPQSLQAI 869
Query: 471 AEVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXV-KKGFMDRAAANQMAMFLSLPLP 529
AE+ L +V +Q++S H K +D+A +Q+ ++ P
Sbjct: 870 AELEHLMAVPQQIISDHGGQPLLGLTQDTLLAAYLLTSSKLLVDKAGMDQLCLWALKQPP 929
Query: 530 QPALLKAGSGDCYWTSTQILQCALP--LSFDCTGGRYLIRESDILGFDLGRDVLPAVINE 587
A++K+ G +WT QI LP L I +++ + G L
Sbjct: 930 DAAIVKSPKGGPFWTGEQIFGLTLPTDLQVGAPHEEVFIEGGEVIRWSNGAKSLRKDSEG 989
Query: 588 IAASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHDFSISGAVK------------ 635
IAA++ GP +N+ + L + +GFS GL DF ++
Sbjct: 990 IAAALCVQLGPVALVNYLNTATGLLHAWLQMHGFSTGLADFQVTSNSADRQKMLKSIFED 1049
Query: 636 -------------RITDRNIGKV------SPLLYQLRFIYNELVAQQLEKHMQ-DIELPA 675
RI D + + SP + E AQQ ++ + ++E
Sbjct: 1050 YYQKSIQESCDSVRILDAKVQAMGQEVISSPDHLTRNINFLEQAAQQTFRNRESEVESIV 1109
Query: 676 IKFASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCD 735
+K+A++ + L M+ S SK + K+ QQI +G QL+ L + + D
Sbjct: 1110 MKYAARDNGLLMMVRSGSKGSRGKLLQQIAGMGLQLYKGQHLLPFSGSRRSSMSNSSELD 1169
Query: 736 YDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILR 795
+ D GL++ GL+P E H I+ R +++R + +PGTLFK+LM LR
Sbjct: 1170 WWED------KGLVRSSLVDGLNPSELFNHVIADRTVILRKHVEVVQPGTLFKSLMLFLR 1223
Query: 796 DVVVCYDGTVRNVCSNSIIQFEYGLKAG-----------------------------DNA 826
D+ V YDG+VRN C +I+QF YG G ++
Sbjct: 1224 DLHVMYDGSVRNQCGKNIVQFCYGGAIGVLKRSIPKERLSRSQFEVVNPATPIVTWEEDD 1283
Query: 827 SYLFP----AGEHVGVLAATAMSNPAYKAVLDASPSSNCSWE------------------ 864
+P AGE VGVLAATA+S PAY+ +LDA P N ++
Sbjct: 1284 LKRWPLSILAGEPVGVLAATAISQPAYELMLDA-PCLNGPFKPRPLELVQPFKALLTFSN 1342
Query: 865 LMKEILLCKVHFRNEPIDRRVILYLNDCDCGRSYCRENAAYAVKNQLRKVSLKDTAVDFI 924
L +E L + +PIDR I+ L +C C + C E AV+ L+K+SLK A
Sbjct: 1343 LAQETLYPRAKSVLKPIDRTAIIRLVNCPCTQPLCLERRVLAVQAHLKKISLKAIAESCA 1402
Query: 925 VEYQQQRKRK-----GSEIDAG--LVGHIHLDEVKLEELKINMAEVFQRCQEKLDSFNRK 977
VE+ + G + G +GHI L +++L++++ + +R +++ +
Sbjct: 1403 VEFWNMENFEVAGPSGEALRMGSPWLGHIKLSLNLMKQLQVDVELMVERLRQRFSGIIKN 1462
Query: 978 RKFNQIFKRTELFFSESCVSPNF---SAPCLTFIWPAGDG-----NDLHETTKILA---- 1025
K + + ++FF CVS N + CL F + ND T +LA
Sbjct: 1463 PKKHPM---GQIFF---CVSYNCGISNGLCLHFSPKLPNKMQNQRNDEIYNTALLALLLK 1516
Query: 1026 --DTICPALLDTIIQGDPRINSANIIWVNPDTNTWVRNPSKSSNGELALDIILEKESIK- 1082
TI LLD ++GD RI S I+ +P TW R + + E L + + K
Sbjct: 1517 IRGTIISGLLDCTVKGDERIESVIIVSEDPSRTTWHRGLTCNQELEEELVLEVVVSPTKS 1576
Query: 1083 --QNGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQIQELLGISCTFDQAIQRLAASVKMVA 1140
+ GDAW V +CLP++H++D RS+PY+I++I+ LG+ ++ QRL + A
Sbjct: 1577 KSKRGDAWASVKQACLPLMHMVDWNRSMPYSIQEIRHALGVEASYQMISQRLGLVLDKTA 1636
Query: 1141 KGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDATL 1187
H+ L+A MT G+ GFN G++ + + I PFT+A+
Sbjct: 1637 PHTRSVHVKLVADMMTFSGDANGFNFSGFQDMNKSTGISAPFTEASF 1683
Score = 72.8 bits (177), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 61/113 (53%), Gaps = 4/113 (3%)
Query: 12 GNVVGIQFGMATRQEICTXXXXXXXXX-XXXXXXNPFLGLPLEYGRCESCGTSEAGKCEG 70
++VG+Q G+AT EI +P LGLP E RC +CG + +C G
Sbjct: 239 ADLVGLQIGLATTSEILGHSVIESRSKDTLISLVDPRLGLPAEDERCATCGGTNYDECTG 298
Query: 71 HFGYIELPVPIYHPSHVSELKKMLSLVCLNC--LKMKKTK-FPSSSSGLAQRL 120
HF +++L PI+HP+++ ++++L +CL C K+KK K F ++ L Q
Sbjct: 299 HFAHVKLTQPIFHPNYIRCVQRVLQKICLACGVPKVKKMKSFSEEAANLKQNF 351
>A9SIR4_PHYPA (tr|A9SIR4) DNA-directed RNA polymerase OS=Physcomitrella patens
subsp. patens GN=NRPDA1502 PE=3 SV=1
Length = 1795
Score = 407 bits (1047), Expect = e-110, Method: Compositional matrix adjust.
Identities = 310/1079 (28%), Positives = 507/1079 (46%), Gaps = 123/1079 (11%)
Query: 160 FWRFLD----KYGYRYEVDHTRALLPCEVMEMIKRFPLETKKKLAGKGYFPQ-DGYVIKY 214
+W FL ++ + Y+V LLP E + ++K+ P KL + +G ++K
Sbjct: 388 YWAFLQSAPARHQHYYKVPKQHYLLPSEALAILKKIPEGAIGKLGMNRLVARPEGLIMKC 447
Query: 215 LPVPPNCLXXXXXXXXXXXXXXX----XXXTFLRKLLRKVEVIRSSRSGEPNFESHQVEA 270
+ +PPNC L+KL+ ++ IR +R+G+ + + E+
Sbjct: 448 VLIPPNCTRTTDYKHVNNTTAVRFGTDNVTRTLQKLVAEIVHIRKTRAGKATNRTQRDES 507
Query: 271 NDLQSVVDQYLQIRGCAK--PARDI---ETHFGVNKELSDASNKAWLDKMKSLFISKGSG 325
LQ + +YL+ +G K P ++ + + V K+ K WL + + K
Sbjct: 508 TKLQILTAEYLREKGAPKAVPGKEPLKRDRNGRVTKQDYHRWTKEWLSQN---VLGKSGN 564
Query: 326 FSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLVD---------ENLC 376
F++++V+ GD + I ++GIP IAQ++T ER + N LQ+ V+ EN
Sbjct: 565 FTAKAVLAGDPFLGIEQIGIPWLIAQKLTLPERASQWNHTKLQEYVNVSQKLQQESENTA 624
Query: 377 LAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALVVYIHD 436
A + + + SK ++ G IVHR I DGD V++NRPP+ H+HSL AL V+IH
Sbjct: 625 HATRVERNEVVYQVLSKTSLKVQIGDIVHRHIQDGDYVYVNRPPSVHRHSLVALKVHIHH 684
Query: 437 DHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHXXXXXXXXX 496
T+ +NPLIC P ADFDGD H+F PQSL A AE+ +L +V++Q++S H
Sbjct: 685 QPTITVNPLICPPFSADFDGDIFHIFAPQSLQAIAELDQLMAVKQQVISEHGGQPLLELT 744
Query: 497 XXXXXXXXXXV-KKGFMDRAAANQMAMFLSLPLPQPALLKAGSGDCYWTSTQILQCALPL 555
KK F+D+A +Q+ ++ S P+ A+LK+ G +WT Q+ LP
Sbjct: 745 QDTLLAAHLLTSKKLFLDKATMDQLCLWASKKPPEAAILKSPKGGPFWTGEQVFALTLPE 804
Query: 556 SFDCTGGR--YLIRESDILGFDLGRDVLPAVINEIAASVFFGKGPQEALNFFDVLQPFLM 613
F+ + I+ +I+ + G +L + +AA++ GP +++ + L
Sbjct: 805 DFELGAPQEEVFIQGGEIIRWRNGTKLLRKGNDSVAAALCVQLGPVALVDYLNTATGVLH 864
Query: 614 ECIFSNGFSVGLHDFSI-------------------------SGAVKRITDRNIGKV--- 645
+ GFS GL DF + S RI D + +
Sbjct: 865 TWLQVQGFSTGLTDFQVTPNRTKRQEMLKSILEESFLKSIQESCDFVRILDAKVQALDSD 924
Query: 646 ---SP--LLYQLRFIYNELVAQQL-EKHMQDIELPAIKFASKSSRLGDMIDSKSKSALDK 699
SP L +RF+ E VA+++ +K + K+A + + L M++S SK +++K
Sbjct: 925 ENPSPESLTKNIRFL--EQVAREIFQKRRSEAGRIVAKYAEQRNSLLMMVESGSKGSMEK 982
Query: 700 VTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGCFFHGLDP 759
+ QQI +G QL+ L S A + + D+ D GL++ GL
Sbjct: 983 LLQQIAGMGLQLYKGQHLLSYSSSRRPAMTYSSQLDWWED------MGLVRSSLVDGLKA 1036
Query: 760 FEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 819
E H I+ R ++R + +PGTLFK LM LRD+ + YDG+VR+ CS ++IQF YG
Sbjct: 1037 NELFRHVIADRTGILRKHVEVVQPGTLFKALMFFLRDLHIMYDGSVRSQCSKNLIQFCYG 1096
Query: 820 LKAG---------------DNASYLFP----AGEHVGVLAATAMSNPAYKAVLDASPSSN 860
G ++ +P AGE VGVLAA A+S PAY+ +LDA PS N
Sbjct: 1097 GARGSLIPRKPTEETLAWEEDDHRRWPLSVLAGEPVGVLAAAAISQPAYELMLDA-PSLN 1155
Query: 861 CSWE-----LMKEILLCKVHFRNEPIDRRVILYLNDCDCGRSYCRENAAYAVKNQLRKVS 915
++ L++E L + +P DR V+L L C+C S C E V+ L++++
Sbjct: 1156 GPFKPRPLNLIQETLYPREKSSLKPTDRCVVLRLVHCECTESLCLERRVLEVQAHLKRIN 1215
Query: 916 LKDTAVDFIVEYQQQRKRKGSEIDAGLV-------GHIHLDEVKLEELKINMAEVFQRCQ 968
L+ A VEY + + LV GHI+L + +++ ++N+ ++ +R
Sbjct: 1216 LRMMAESVAVEYWNMEDSRAAGPSGDLVRLGSPWLGHINLSQDAMKQCEVNVEDIVKRLC 1275
Query: 969 EKLDSFN----RKRKFNQIFKRTELFFSESCVSPN----FSAPCLTFIWPAGDGNDLHET 1020
+K +K K QIF S +C N +P L D +
Sbjct: 1276 QKFSQTAGYVLKKNKMGQIF----FCHSYNCSFSNGYCLHFSPSLPIKMRHCSNEDRYNK 1331
Query: 1021 TKI-----LADTICPALLDTIIQGDPRINSANIIWVNPDTNTWVRNPSKSSNG---ELAL 1072
+ + +TI P LLD ++GD RI + ++ P + TW R + + EL L
Sbjct: 1332 ALLDLLLRIQETIIPGLLDCTMKGDERIETVRVVCEGPASTTWHRRFAHCTGNLDEELVL 1391
Query: 1073 DIILEKESIKQNGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQIQELLGISCTFDQAIQR 1131
++ + S K G AW V +C+ + L+D RS+PY+I++I+ LGI + +Q+
Sbjct: 1392 EVYVSPSSSKSRGMAWASVKQACVSLKDLVDWNRSMPYSIQEIRCSLGIEVAYQIVVQQ 1450
>M0XPZ2_HORVD (tr|M0XPZ2) DNA-directed RNA polymerase OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 511
Score = 389 bits (1000), Expect = e-105, Method: Compositional matrix adjust.
Identities = 220/513 (42%), Positives = 308/513 (60%), Gaps = 58/513 (11%)
Query: 340 INEVGIPHEIAQRITFEERVNSHNMCYLQKLVDENLCLAYKEGVS-TYSLREG--SKGHT 396
+N VG+P E+A+R++ +E V +N+ LQ ++D LCL +K+ S T+SL G +K T
Sbjct: 1 MNVVGVPDEVARRMSVQEHVTDYNIAQLQDMMDRGLCLTHKDANSITHSLDVGKENKKRT 60
Query: 397 YLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDG 456
LK G+ V+RRI+DGD+VFINRPP+T KHS+QA+ V +H DHT+KINPLICGPLGADFDG
Sbjct: 61 ILKVGETVNRRILDGDVVFINRPPSTDKHSVQAMYVRVHTDHTIKINPLICGPLGADFDG 120
Query: 457 DCVHLFYPQSLAAKAEVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKKGFMDRAA 516
DCVH+F+P+S++A+AE +ELF VEKQL+SSH + + R
Sbjct: 121 DCVHIFFPRSVSARAEAMELFMVEKQLVSSHNEKLNFRLKNDCLLALKKISGRKY-SRRE 179
Query: 517 ANQM--AMFLSLPLPQPALLKAGSGDCYWTSTQILQCALPLSFDCTGGRYLIRESDILGF 574
ANQ+ AMF +P+ L SG W+ QIL+ LP E+ IL
Sbjct: 180 ANQLMNAMFTGGLIPKKRL----SGGPEWSFAQILETVLP------------EENKILIR 223
Query: 575 DLGRDVLPAVINEIAASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHDFSISGAV 634
DL + +SV K P+EA+ F ++LQP LME +F++GFSV L DF+ +
Sbjct: 224 DLAAGTV------TISSVLSTKNPKEAIEFLNLLQPLLMESLFTDGFSVSLRDFNFHNPI 277
Query: 635 KRITDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQDIELPAIKFASKSSRLGDMIDSKSK 694
+ T + L +L K + D+ SS + ++D KS
Sbjct: 278 PQTTQ----------------HQTLDLDKLRKPIVDL--------VTSSDIRFLVDQKSD 313
Query: 695 SALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDG-YPSAEYGLLKGCF 753
SA+ K+ +QIGFLG QL GRLYS L+ED S KC +G +P +G ++ F
Sbjct: 314 SAMTKIVEQIGFLGHQLQRNGRLYSSSLVEDCLSKSLSKCGSSTNGCHPLEAHGFVRNSF 373
Query: 754 FHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSI 813
++GL+P+E+L+HSIS RE +R+S+GL EPG LFKN+MA+LRDVV CYDG++RN C NSI
Sbjct: 374 WNGLNPYEDLLHSISAREKTIRASKGLVEPGDLFKNMMAMLRDVVACYDGSIRNSCGNSI 433
Query: 814 IQFEYGLKAGDNASYLFPAGEHVGVLAATAMSN 846
I+F+ N+S G+ VG+LAATA++N
Sbjct: 434 IKFDL-----TNSSSSVTPGDPVGILAATAVTN 461
>M5XPM8_PRUPE (tr|M5XPM8) Uncharacterized protein OS=Prunus persica
GN=PRUPE_ppa024567mg PE=4 SV=1
Length = 792
Score = 388 bits (997), Expect = e-104, Method: Compositional matrix adjust.
Identities = 232/501 (46%), Positives = 296/501 (59%), Gaps = 52/501 (10%)
Query: 991 FSESCVSPNFSAPCLTFIWPAGDGNDLHETTKILADTICPALLDTIIQGDPRINSANIIW 1050
F SC +PCL F A D + T + AD ICP LL+TII+GDPRI SANIIW
Sbjct: 27 FYHSCAEKRSDSPCLMFFLQATDDLETTTTLQYYADLICPVLLETIIKGDPRIGSANIIW 86
Query: 1051 VNPDTNTWVRNPSKSSNGELALDIILEKESIKQNGDAWRIVLDSCLPVLHLIDTRRSIPY 1110
++PDT TW+R+P+KS + IKQ+GDAWR VLDSCLPVLHLIDTRRSIPY
Sbjct: 87 IDPDTTTWIRSPNKS------------HKVIKQSGDAWRTVLDSCLPVLHLIDTRRSIPY 134
Query: 1111 AIKQIQELLGISCTFDQAIQRLAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYK 1170
AIKQIQELLG+SC FDQA+QRL+ +V M+AKGVL+EHLILLA+SMTC GN VGFN+ GYK
Sbjct: 135 AIKQIQELLGVSCAFDQAVQRLSTAVTMMAKGVLKEHLILLANSMTCAGNFVGFNSNGYK 194
Query: 1171 ALARQLNIQVPFTDATLFTPKRCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSKFDVL 1230
AL+R LNIQVPFT+ATLFTP++CFERAAEKCH DSL+SIVASCSWGK VAVGTG++FDVL
Sbjct: 195 ALSRALNIQVPFTEATLFTPRKCFERAAEKCHMDSLASIVASCSWGKHVAVGTGARFDVL 254
Query: 1231 WDAKEIKSNDLDGMDVYNFLHMVKSLTNGEEENNACXXXXXXXXXXXXNADYSLSPQHTS 1290
WD +E++ G+DV+NFLHMV + E A AD S SP+ S
Sbjct: 255 WDTREVELTQEGGLDVFNFLHMVSTANVEEATTGALGAEVDDLMLVDEMADSSFSPELNS 314
Query: 1291 GVD-AVFEETFEAMNG----PESNGWGSNTD-RTETNSTQ----------------WSAW 1328
D VFE+ E + PE + W ++ T++N + WS+W
Sbjct: 315 SFDRPVFEDLVEFDDKLGDLPEKSNWEKDSSFHTDSNGGKDWSVDKNVGTVAVPDVWSSW 374
Query: 1329 ESNKAETKDGGSQRVHEDSWTSRDVMKDDS-QMTNAWDGNVEQTKTISNDWTAWGKNKSE 1387
++K E D + V ED + S K ++AW N + S AWG N +
Sbjct: 375 GTDKGE-NDWCGRGVGEDDFVSLSGKKSGVLNTSSAWATNTAREDAAS----AWGTNPA- 428
Query: 1388 IQDNVAEKAEGECGSSEKW-KTAVIQEGSSKSNAWKSNIEQRSDEDSWTSQKLKADVIQD 1446
++N S W V Q+ S+ + KS++ S +W + + D
Sbjct: 429 -KENTTSTWGTTTASENDWCGRWVGQDDSASLSVKKSSVLDTS--SAWATNTAREDAA-- 483
Query: 1447 SSKPSSWGAKP-KSNDSSNWG 1466
S+ G +P K N +S WG
Sbjct: 484 ----SACGKQPAKENATSTWG 500
>I1NVI7_ORYGL (tr|I1NVI7) DNA-directed RNA polymerase OS=Oryza glaberrima PE=3
SV=1
Length = 1567
Score = 376 bits (966), Expect = e-101, Method: Compositional matrix adjust.
Identities = 201/425 (47%), Positives = 270/425 (63%), Gaps = 19/425 (4%)
Query: 45 NPFLGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKM 104
NP+LGLPL+ G C+SCG++ +CEGHFG+IELP+PI+HPSHV+EL ++L+L+CL CLK+
Sbjct: 57 NPYLGLPLQVGSCQSCGSNAIEECEGHFGFIELPMPIFHPSHVTELSQILNLICLRCLKI 116
Query: 105 KKTKFPSSSSGLAQRLLSPCCQEPNAAQVSIREVKTGDGACYLVLKVS-KSKMQDGFWRF 163
K K S L + C + + EVK +GA L L+ K ++++GFW F
Sbjct: 117 KNRK----KSTLKGSKFTSCSHCQELPPLCVAEVKKSNGARGLELRAPIKKELEEGFWSF 172
Query: 164 LDKYGY-RYEVDHTRALLPCEVMEMIKRFPLETKKKLAGKGYFPQDGYVIKYLPVPPNCL 222
LD++G H R LLP EV +IK+ P ET++ L+ +GY PQDG+++ YL VPPNCL
Sbjct: 173 LDQFGSCTRGTSHCRPLLPEEVQNIIKKIPEETRRWLSVRGYIPQDGFILSYLCVPPNCL 232
Query: 223 XXXXXXXXXXXXXXXXXXTFLRKLLRKVEVIRSSRSGEPNFESHQVEANDLQSVVDQYLQ 282
LRK LRK++ IR SR G N + QV A+DLQ V Y+
Sbjct: 233 RVSNVLDGNTFSCSGTSTNLLRKALRKIQQIRGSRIGSSNIQVDQV-ADDLQVDVANYIN 291
Query: 283 IRGCAKPARDIETHFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINE 342
+ G K D + S + W KMK+LFISK S FSSR VITGD Y +N
Sbjct: 292 LGGTTKGHGD-------DTFTSQPTAMQWKQKMKTLFISKSSSFSSRGVITGDPYIGLNV 344
Query: 343 VGIPHEIAQRITFEERVNSHNMCYLQKLVDENLCLAYKEGVS-TYSLREG----SKGHTY 397
VG+P E+A+R++ EE+V HN+ LQ ++++ LCL Y + S TYSL G +K HT
Sbjct: 345 VGVPEEVAKRMSVEEKVTDHNIAQLQDMMNKGLCLTYTDANSITYSLDAGKDNPNKKHTI 404
Query: 398 LKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGD 457
LK G+IV+RR+ DGDIVF+NRPP+T KHS++A V +H+DHT+KINPLIC PLGADFDGD
Sbjct: 405 LKVGEIVNRRVFDGDIVFLNRPPSTDKHSVEAFYVQVHNDHTIKINPLICDPLGADFDGD 464
Query: 458 CVHLF 462
C +L
Sbjct: 465 CPNLL 469
Score = 123 bits (308), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 57/127 (44%), Positives = 85/127 (66%), Gaps = 2/127 (1%)
Query: 1131 RLAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDATLFTP 1190
+ + SV M+ K VL+EHL +ASSMTC +L GFN GYKA + L +Q PF +ATL
Sbjct: 1110 KFSKSVGMITKSVLQEHLTTVASSMTCTDDLHGFNNSGYKATCQSLKVQAPFMEATLSRS 1169
Query: 1191 KRCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSKFDVLWDAKEIKSND--LDGMDVYN 1248
+CFE+AA K ++D L ++V++CSWG +GTGS F++LW+ + + S+ L G +Y+
Sbjct: 1170 IQCFEKAAAKAYSDQLGNVVSACSWGNNTEIGTGSAFEILWNDENMSSSKSILGGYGLYD 1229
Query: 1249 FLHMVKS 1255
FL V++
Sbjct: 1230 FLEAVET 1236
>Q1L5X8_9BRYO (tr|Q1L5X8) DNA-directed RNA polymerase (Fragment) OS=Sphagnum sp.
JL-2005 GN=RPD1 PE=2 SV=1
Length = 969
Score = 353 bits (906), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 270/899 (30%), Positives = 427/899 (47%), Gaps = 124/899 (13%)
Query: 449 PLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHXXXXXX-XXXXXXXXXXXXXV 507
P ADFDGD H+F PQS+ A E+ EL +V++Q++ S
Sbjct: 1 PYNADFDGDIFHIFVPQSVEAMVELKELMTVQQQIICSQGGLPLLGLTQDTLLAAHLMTC 60
Query: 508 KKGFMDRAAANQMAMFLSLPL-PQPALLKAGSGDCYWTSTQILQCALP--LSFDCTGGRY 564
+K F+D+ + +Q+ M+ S + P+ A+LK+ G WT Q+ LP + F G
Sbjct: 61 QKVFLDKVSMDQLQMWSSAAVVPEAAILKSPKGGPLWTGEQLYSLTLPAGVDFHTLDGEV 120
Query: 565 LIRESDILGFDLGRDVLPAVINEIAASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVG 624
LIR +IL L N + ++ GP+ + + + + L + SNGFS G
Sbjct: 121 LIRNGEILKTGFSSKWLQKGRNSLIDAICDQSGPEAVVEYLNSAKGLLHAWLDSNGFSTG 180
Query: 625 LHDFSISGAVK---------------RITDRNIG--KVSPLLYQLR-----------FIY 656
L DF ++ K R +++I ++ +QL F
Sbjct: 181 LTDFLVTSNAKERRSMLQRVSVDCLQRAKEQSINTLQICDAKFQLSHLSVDLEVDGAFDR 240
Query: 657 NELVAQQLEKHMQDIELPAIK-FASKSSRLGDMIDSKS---------------KSALDKV 700
E+ L +Q +E AIK F + + +G+++ S K+++ K+
Sbjct: 241 LEVNPASLSNKVQMLESIAIKAFRASMAGMGNIVQESSVSQNSLFSMVKAGSTKASMSKL 300
Query: 701 TQQIGFLGQQLFVRGRL--YSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGCFFHGLD 758
QI +G QL+ + +S L +L+ ++ ++GL++ GL
Sbjct: 301 LDQIACMGLQLYKGEHMLPFSHVLNNSAPLESQLQEWWE-------DHGLVQNSLVDGLT 353
Query: 759 PFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEY 818
F+ H I+ R ++R + +PGTLFK LM LRD+ V YDGTVR+ C ++QF Y
Sbjct: 354 AFQLFNHVIANRTSILRKHVEVVQPGTLFKVLMLFLRDLHVGYDGTVRSQCGQKVVQFCY 413
Query: 819 GLKAGDN-------------ASYLFPAGEHVGVLAATAMSNPAYKAVLDASPSSNCSW-- 863
G + SYL AGE VGVLAATA+S PAY+++LDA S W
Sbjct: 414 GGARARHRRSRKEDPDLRWKVSYL--AGEPVGVLAATALSQPAYESMLDAPHHSG--WKI 469
Query: 864 ---ELMKEILLCKVHFRNEPIDRRVILYLNDCDCGRSYCRENAAYAVKNQLRKVSLKDTA 920
EL++E L + + +DRR IL L CDC +S C E V+NQLR++ LK A
Sbjct: 470 RPLELVQETLYPREKGDPKAVDRRAILRLTHCDCSKSSCLERRVLRVQNQLRRIILKTLA 529
Query: 921 VDFIVEY-QQQRKRKGSEIDAGL------VGHIHLDEVKLEELKINMAEVFQRCQEK--- 970
I+EY +RK A L +GHIH+ + L++ ++ M ++ + Q K
Sbjct: 530 QTSIIEYWDATNERKAGVNGAALRLGSPWLGHIHISKEVLQQHELTMTKIVGKLQRKFSI 589
Query: 971 LDSFNRKRKFNQIFKRTELFFSESC-----VSPNFSAPCLTFIWPAGDGND----LHETT 1021
L +K QIF SE C + +FS + D ++ L E
Sbjct: 590 LRPITKKNPLGQIF----FCHSEFCDVSRGLCIHFSPKLPKKMQNQYDDDEYSHSLLELM 645
Query: 1022 KILADTICPALLDTIIQGDPRINSANII--------WVNPDTNTWVRNPSKSSNGELALD 1073
K + D I PALL+ I+GD R+ S I+ W +P T VR P + EL L+
Sbjct: 646 KKMRDRILPALLECTIKGDERLESVKIVQEDCTWPSW-HPKTAGVVR-PGEE---ELVLE 700
Query: 1074 IILEKESIKQNGD---AWRIVLDSCLPVLHLIDTRRSIPYAIKQIQELLGISCTFDQAIQ 1130
++ S+ Q AW V+++C+PV+ +D +RS+PY+I++++ LGI + +Q
Sbjct: 701 VV-ATSSLHQKSKRNMAWNAVMEACVPVMEEVDWQRSMPYSIQEMKHALGIEVAYQMVVQ 759
Query: 1131 RLAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDATLFTP 1190
R+A +++ A REH+ L+ +MT G+ GF G++ + + +I PFT+A P
Sbjct: 760 RVALALEETAPHTYREHIKLIGDTMTYSGDANGFTFSGFRDMIKSAHISAPFTEAAYQKP 819
Query: 1191 KRCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSKFDVLW-----DAKEIKSNDLDGM 1244
R F AA K DSL S++ SC WG+ +GTG+K ++ W D +E++ DL +
Sbjct: 820 IRNFLDAAAKGAMDSLESVMTSCVWGREAPLGTGTKIELRWQPPHEDLQEVEEKDLHAI 878
>D8RN79_SELML (tr|D8RN79) DNA-directed RNA polymerase OS=Selaginella moellendorffii
GN=SELMODRAFT_413061 PE=3 SV=1
Length = 1444
Score = 352 bits (902), Expect = 9e-94, Method: Compositional matrix adjust.
Identities = 355/1320 (26%), Positives = 559/1320 (42%), Gaps = 188/1320 (14%)
Query: 12 GNVVGIQFGMATRQEICTXXXXXXXXXXXXXXXNPFLGLPLEYGRCESCGTSEA----GK 67
G ++ + F T +EI N GLP C SCG
Sbjct: 20 GTLIALDFRPLTSEEII--RASVYEVKTVRALQNNRFGLPNLSDCCTSCGAKRTDASNSA 77
Query: 68 CEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKMKK----------TKFPSSSSGL- 116
C GH G+IELPV +YH +S L+ +L+ VCL+C K + +SG+
Sbjct: 78 CPGHSGHIELPVLVYHWDRISALEAILNRVCLHCYSFKHKGRKKELRTLSSLEQVASGVD 137
Query: 117 -----------------AQRLLSPC--CQEPNAAQVSI-REVKTGDGACYLVL---KVSK 153
A+ C C P AA I ++V T + L+ KV +
Sbjct: 138 AHQADIGAVPNGARAPEAEEDPEKCAVCSGPAAAVKKIFKKVGTANVPALLLEIDGKVRR 197
Query: 154 SKMQDGFWRFL--DKYGYRYEVDHTRALLPCEVMEMIKRFPLETKKKLAGKGY--FPQDG 209
+ GF + D+ ++ ++ L P +V+ ++K P ET KL + P +
Sbjct: 198 EDIPPGFQSLILKDEMTPQW---RSKMLDPNQVLRILKCLPRETTDKLRDEKLPSIPAED 254
Query: 210 YVIKYLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEVIRSSRSGEPNFESHQVE 269
Y IK LPVPPN + L+ LL K++ I +R + + +
Sbjct: 255 YFIKSLPVPPNWMRYSTNEFYFQDKTTKN----LKHLLTKIKSIVYTRDEDKISLLTEQK 310
Query: 270 ANDLQSVVDQYLQIRGCAKPARDIETHFGVNKELSDASNK-AWLDKMKSLFISKGSGFSS 328
++Q+ Q ++ D + +G +SD S + L ++SL K G S+
Sbjct: 311 VMEIQAAATQCIRANPLYGNVSDEDPRYG---NVSDESKPLSGLQFLRSL-TGKYCGSSA 366
Query: 329 RSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLVDENLCLAYKEGVSTYSL 388
R+V+ GD ++ E+GI IA + E V S N+ LQ N L G +
Sbjct: 367 RAVVIGDPALKLEEIGISARIAAGLVVLETVTSSNIISLQSYAYNNPGLKVVRGGEVCTG 426
Query: 389 REGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICG 448
R K L+ G ++HR + DGD VF+NRPPT HKH+L L + ++ +NPLIC
Sbjct: 427 RSCKK----LRVGDVIHRSLKDGDQVFVNRPPTFHKHALIGLKSKVIRNNVFAVNPLICS 482
Query: 449 PLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVK 508
PL ADFDGD + L+ PQSL +AEV EL ++ KQL+SS +
Sbjct: 483 PLFADFDGDTLALYLPQSLQVRAEVAELVALPKQLVSSQGGQSIIGLTQDALLGAHLMTR 542
Query: 509 KG-FMDRAAANQMAMFL-SLPLPQPALLKAGSGDCYWTSTQILQCALPLSFDCTG--GRY 564
K F+D+ +Q+ M+ S +P PA++K+ WT Q+ Q LP +FD GR
Sbjct: 543 KNVFLDKLDMDQLRMWCPSAKVPVPAIVKSPRKSPLWTGKQLFQMTLPTTFDSESDDGRL 602
Query: 565 LIRESDILGFD------LGRDVLPAVINEIAASVFFGKGPQEALNFFDVLQPFLMECIFS 618
+IR+ +IL LG+D L I GP AL D Q ++ I
Sbjct: 603 IIRQGEILRTSDKSSAWLGKDGLMTTICR-------RYGPDRALEHLDTAQGIAVDWISE 655
Query: 619 NGFSVGLHDFSISG-AVKR-------ITDRNIGKVSPLLYQL----RFIYNEL------- 659
GFSVGL DF ++ AV R + K+S L +Q+ RF N +
Sbjct: 656 RGFSVGLCDFYMAADAVSRRKLEEETLCAVEEAKISSLAHQIVSDSRFQVNSVSRPRCSS 715
Query: 660 -------------VAQQ-----LEKHMQDIELPAIKFASKSSR---LGDMIDSKSKSALD 698
QQ + M+ E + ++SR L M+++KSK +L
Sbjct: 716 WNERVQPVTSANEATQQAAISAFQSTMKAFERTIEEHVRENSRENSLLRMVEAKSKGSLS 775
Query: 699 KVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSA-----EYGLLKGCF 753
K+ QQ G LG QL +Y + V S F + + GY ++ GL++ F
Sbjct: 776 KMMQQGGCLGLQLRQGEFVYHR-----VKSLFPRAVENESRGYLTSSELWKSMGLVESSF 830
Query: 754 FHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSI 813
GLDP E +HS+S+R+ S + + + F+ LM+ ++D+ V YD T+R+ I
Sbjct: 831 LDGLDPREFFIHSLSSRKGNDGSQQRCA---SFFRFLMSYMKDIRVEYDNTIRSTHGGHI 887
Query: 814 IQFEYGLKAGDNASYLFPAGEHVGVLAATAMSNPAYKAVLDASPSSNCSWELMKEILLCK 873
QF YG A GE VG+LA TA+ P Y V+ +SP ++ + ++ IL
Sbjct: 888 FQFSYGATA--------EPGEPVGLLAGTAVIEPVYDQVMSSSPQASTMLKTLQNILFSN 939
Query: 874 VHFRNEPIDRRVILYLNDCDCGRSYCRENAAYAVKNQLRKVSLKDTAVDFIVEYQQQRKR 933
F++ IDR V L L + A V++ L+ V++ A +EY +
Sbjct: 940 -SFKD--IDRCVTLKLQKLPVQPEWI----ALQVQDFLKPVTIGMLASKIWIEYSPCSEV 992
Query: 934 KGSEIDAGLVGHIHLDEVKLEELKINMAEVFQRCQEKL-DSFNRKRKFNQIFKRTELFFS 992
G + +G L +E +N+ + +++L S + F Q FFS
Sbjct: 993 GGQKKRVPWIGCFELRAEAMERCSLNIDTIVCHLRKQLPTSLDDPDAFIQGLH----FFS 1048
Query: 993 ESCVSPNFSAPCLTFIWPAGDGNDLHETTKILADTICPALLDTIIQGDPR-INSANIIWV 1051
+ C I + D + K + T+ LL +++G PR I N+ W
Sbjct: 1049 R-----DVEVLCFFPITSSVSNYDSKQIHKHMIGTMFRNLLQVVVKGCPRGIEFVNVKWE 1103
Query: 1052 NPDTNTWVRNPSKSSNGELALDIILEKESIKQNGDAWRIVLDSCLPVLHLIDTRRSIPYA 1111
+ EL +++ + G W L++C + HL+D ++S P +
Sbjct: 1104 D----------------ELCIEVAFLS---RTRGVPWTHALEACGSISHLVDWQKSTPLS 1144
Query: 1112 IKQIQELLGISCTFDQAIQRLAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKA 1171
I+++ GI + +++L K GVLR+ + N GY+A
Sbjct: 1145 IQEVHVAFGIEAAYQYLLEKLKEFTK--GSGVLRKPW-----------KNIDANESGYEA 1191
Query: 1172 LARQLNIQVPFTDATLFTPKRCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSKFDVLW 1231
+ L+ P A +P FE AA D L+ GK ++GTG+ ++ +
Sbjct: 1192 FVKNLSGCSPLAFAMGKSPGGVFEAAAMNREVDYLAGANELAFCGKSPSLGTGANIELFF 1251
>D8RLP4_SELML (tr|D8RLP4) DNA-directed RNA polymerase OS=Selaginella moellendorffii
GN=SELMODRAFT_441655 PE=3 SV=1
Length = 1438
Score = 345 bits (885), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 348/1317 (26%), Positives = 556/1317 (42%), Gaps = 185/1317 (14%)
Query: 12 GNVVGIQFGMATRQEICTXXXXXXXXXXXXXXXNPFLGLPLEYGRCESCGTSEA----GK 67
G ++ + F T +EI N GLP C SCG
Sbjct: 20 GTLIALDFRPLTSEEII--RASVYEVKTVRALQNNRFGLPNLSDCCTSCGAKRTDASNSA 77
Query: 68 CEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKMKK----------TKFPSSSSGL- 116
C GH G+IELPV +YH +S L+ +L+ VCL+C K + +SG+
Sbjct: 78 CPGHSGHIELPVLVYHWDRISALEAILNRVCLHCYSFKHKGRKKELRTLSSLEQVASGVD 137
Query: 117 -----------------AQRLLSPCCQEPNAAQVSIREVKTGDGACYLVL---KVSKSKM 156
A+ C A + ++V T + L+ KV + +
Sbjct: 138 AHQADIGAVPNGARAPEAEENPGKCTGPAAAVKKIFKKVGTANVPALLLEIDGKVRREDI 197
Query: 157 QDGFWRFL--DKYGYRYEVDHTRALLPCEVMEMIKRFPLETKKKLAGKGY--FPQDGYVI 212
GF + D+ ++ ++ L P +V+ ++K P ET KL + P + Y I
Sbjct: 198 PPGFQSLILKDEMTPQWR---SKMLDPNQVLRILKCLPQETIDKLRDEKLPSIPAEDYFI 254
Query: 213 KYLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEVIRSSRSGEPNFESHQVEAND 272
K LPVPPN + L+ LL K++ I +R + + + +
Sbjct: 255 KSLPVPPNWMRYSTNEFYFQDKTTKN----LKHLLTKIKSIVYTRDEDKISLLTEQKVME 310
Query: 273 LQSVVDQYLQIRGCAKPARDIETHFGVNKELSDASNK-AWLDKMKSLFISKGSGFSSRSV 331
+Q+ Q ++ D + +G +SD S + L ++SL K G S+R+V
Sbjct: 311 IQAAATQCIRANPLYGNVSDEDPRYG---NVSDESKPLSGLHFLRSL-TGKYCGSSARAV 366
Query: 332 ITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLVDENLCLAYKEGVSTYSLREG 391
+ GD ++ E+GI IA + E V S N+ +LQ N L G + R
Sbjct: 367 VIGDPALKLEEIGISARIAAGLVVLETVTSSNIIFLQSYAYNNPGLKVVRGGEVCTARSC 426
Query: 392 SKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLG 451
K L+ G ++HR + DGD VF+NRPPT HKH+L L + ++ +NPLIC PL
Sbjct: 427 KK----LQVGDVIHRSLKDGDQVFVNRPPTFHKHALIGLKSKVIRNNVFAVNPLICPPLF 482
Query: 452 ADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKKG- 510
ADFDGD + L+ PQSL +AEV EL ++ KQL+SS +K
Sbjct: 483 ADFDGDTLALYLPQSLQVRAEVAELVALPKQLVSSQGGQSIIGLTQDALLGAHLMTRKNV 542
Query: 511 FMDRAAANQMAMFL-SLPLPQPALLKAGSGDCYWTSTQILQCALPLSFD--CTGGRYLIR 567
F+D+ +Q+ M+ S +P PA++K+ WT Q+ Q LP +FD G +IR
Sbjct: 543 FLDKLDMDQLRMWCPSAEVPVPAIVKSPRKSPLWTGQQLFQMTLPTTFDWESDDGGLIIR 602
Query: 568 ESDILGFD------LGRDVLPAVINEIAASVFFGKGPQEALNFFDVLQPFLMECIFSNGF 621
+ +IL LG+D L I GP AL D+ Q ++ I GF
Sbjct: 603 QGEILRTSDKSSAWLGKDGLMTTICR-------RYGPDRALEHLDIAQGIAVDWISERGF 655
Query: 622 SVGLHDFSISG-AVKR--ITDRNI-----GKVSPLLYQL----RFIYNEL---------- 659
SVGL DF ++ AV R + + + K+S L +Q+ RF N +
Sbjct: 656 SVGLCDFYMAADAVSRRKLEEETLCAVEEAKISSLAHQIVSDPRFQVNSVSRPRCNSWNE 715
Query: 660 ----------VAQQ-----LEKHMQDIELPAIKFASKSSR---LGDMIDSKSKSALDKVT 701
QQ + M+ E + ++SR L M+++ SK + K+
Sbjct: 716 RVQPVTSVNEATQQAAISAFQSTMKAFERTIEEHVRENSRENSLLRMVEANSKGSFSKMM 775
Query: 702 QQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSA-----EYGLLKGCFFHG 756
QQ G LG QL +Y + V S F + + GY ++ GL++ F G
Sbjct: 776 QQGGCLGLQLRQGEFVYHR-----VKSLFPRAVENESRGYLTSSELWKSMGLVESSFLDG 830
Query: 757 LDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQF 816
LDP E +HS+S+R+ S + + + F+ LM+ ++D+ V YD T+R+ I QF
Sbjct: 831 LDPREFFIHSLSSRKGNDGSQQRCA---SFFRFLMSYMKDIRVEYDNTIRSTHGGHIFQF 887
Query: 817 EYGLKAGDNASYLFPAGEHVGVLAATAMSNPAYKAVLDASPSSNCSWELMKEILLCKVHF 876
YG A GE VG+LA TA+ P Y V+ +SP ++ + ++ IL F
Sbjct: 888 SYGATA--------EPGEPVGLLAGTAVIEPVYDQVMSSSPQASTMLKTLQNILFSN-SF 938
Query: 877 RNEPIDRRVILYLNDCDCGRSYCRENAAYAVKNQLRKVSLKDTAVDFIVEYQQQRKRKGS 936
++ IDR V L L + A V++ L+ V++ A +EY + G
Sbjct: 939 KD--IDRCVTLKLQKLPVQPEWI----ALQVQDFLKPVTIGMLASKIWIEYSPCSEVGGQ 992
Query: 937 EIDAGLVGHIHLDEVKLEELKINMAEVFQRCQEKL-DSFNRKRKFNQIFKRTELFFSESC 995
+ +G L +E +N+ + ++ L S + F Q FFS
Sbjct: 993 KKRVPWIGCFQLRAEAMERCSLNIDTIVCHLRKLLPTSLDDPDAFIQGLH----FFSR-- 1046
Query: 996 VSPNFSAPCLTFIWPAGDGNDLHETTKILADTICPALLDTIIQGDPR-INSANIIWVNPD 1054
+ C I + D + K + T+ LL +++G PR I N+ W +
Sbjct: 1047 ---DVEVLCFFPITSSVSNYDSKQIHKHMIGTMFGNLLQVVVKGCPRGIEFVNVKWED-- 1101
Query: 1055 TNTWVRNPSKSSNGELALDIILEKESIKQNGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQ 1114
EL +++ + G W L++C + HL+D ++S P +I++
Sbjct: 1102 --------------ELCIEVAFLS---RTRGVPWTHALEACGSISHLVDWQKSTPLSIQE 1144
Query: 1115 IQELLGISCTFDQAIQRLAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALAR 1174
+ GI + +++L K GVLR+ + N GY+A +
Sbjct: 1145 VHVAFGIEAAYQYLLEKLKEFTK--GSGVLRKPW-----------KNIDANESGYEAFVK 1191
Query: 1175 QLNIQVPFTDATLFTPKRCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSKFDVLW 1231
L+ P A +P FE AA D L+ GK ++GTG+ ++ +
Sbjct: 1192 NLSGCSPLAFAMGKSPGGVFEAAAMNREVDYLAGANELAFCGKSPSLGTGANIELFF 1248
>M0XQ02_HORVD (tr|M0XQ02) DNA-directed RNA polymerase OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 417
Score = 343 bits (880), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 196/464 (42%), Positives = 275/464 (59%), Gaps = 53/464 (11%)
Query: 340 INEVGIPHEIAQRITFEERVNSHNMCYLQKLVDENLCLAYKEGVS-TYSLREG--SKGHT 396
+N VG+P E+A+R++ +E V +N+ LQ ++D LCL +K+ S T+SL G +K T
Sbjct: 1 MNVVGVPDEVARRMSVQEHVTDYNIAQLQDMMDRGLCLTHKDANSITHSLDVGKENKKRT 60
Query: 397 YLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDG 456
LK G+ V+RRI+DGD+VFINRPP+T KHS+QA+ V +H DHT+KINPLICGPLGADFDG
Sbjct: 61 ILKVGETVNRRILDGDVVFINRPPSTDKHSVQAMYVRVHTDHTIKINPLICGPLGADFDG 120
Query: 457 DCVHLFYPQSLAAKAEVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKKGFMDRAA 516
DCVH+F+P+S++A+AE +ELF VEKQL+SSH + + R
Sbjct: 121 DCVHIFFPRSVSARAEAMELFMVEKQLVSSHNEKLNFRLKNDCLLALKKISGRKY-SRRE 179
Query: 517 ANQM--AMFLSLPLPQPALLKAGSGDCYWTSTQILQCALPLSFDCTGGRYLIRESDILGF 574
ANQ+ AMF +P+ L SG W+ QIL+ LP E+ IL
Sbjct: 180 ANQLMNAMFTGGLIPKKRL----SGGPEWSFAQILETVLP------------EENKILIR 223
Query: 575 DLGRDVLPAVINEIAASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHDFSISGAV 634
DL + +SV K P+EA+ F ++LQP LME +F++GFSV L DF+ +
Sbjct: 224 DLAAGTV------TISSVLSTKNPKEAIEFLNLLQPLLMESLFTDGFSVSLRDFNFHNPI 277
Query: 635 KRITDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQDIELPAIKFASKSSRLGDMIDSKSK 694
+ T + L +L K + D+ SS + ++D KS
Sbjct: 278 PQTTQ----------------HQTLDLDKLRKPIVDL--------VTSSDIRFLVDQKSD 313
Query: 695 SALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDG-YPSAEYGLLKGCF 753
SA+ K+ +QIGFLG QL GRLYS L+ED S KC +G +P +G ++ F
Sbjct: 314 SAMTKIVEQIGFLGHQLQRNGRLYSSSLVEDCLSKSLSKCGSSTNGCHPLEAHGFVRNSF 373
Query: 754 FHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDV 797
++GL+P+E+L+HSIS RE +R+S+GL EPG LFKN+MA+LRDV
Sbjct: 374 WNGLNPYEDLLHSISAREKTIRASKGLVEPGDLFKNMMAMLRDV 417
>K7LMQ8_SOYBN (tr|K7LMQ8) DNA-directed RNA polymerase OS=Glycine max PE=3 SV=1
Length = 1454
Score = 343 bits (879), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 345/1313 (26%), Positives = 545/1313 (41%), Gaps = 189/1313 (14%)
Query: 48 LGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKMK-K 106
LG P C +CG+ + CEGHFG I+ P PI HP +SE+ +L+ +C C ++ K
Sbjct: 48 LGFPNASDECATCGSKDKRFCEGHFGVIKFPTPILHPYFMSEIAHILNKICPVCKSIRHK 107
Query: 107 TKFPSSSSGLAQRLLSPCCQEPNAAQVSIREVKTGD--GACYLVLKVSKSKMQDG----- 159
+K G + S C +A V + D ++++V SK G
Sbjct: 108 SKGVRLIYGTKR---SNDCNYCSAYPSMKFRVSSNDLFRRTAIIVEVKASKKTLGTEIPA 164
Query: 160 -FWRFLDKYGYRYE-VDHTRALLPCEVMEMIKRFPLETKKKLAGKGYFPQDGYV-IKYLP 216
+W F+ + E + R L P +V+ ++ + +K Y P+ + + P
Sbjct: 165 DYWNFIPCDAQQEENYVNRRVLSPAQVLNLLNGVDPDFIEK-----YIPRKNLLYLNCFP 219
Query: 217 VPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEVIRSSRSGEPNFESHQVEANDLQSV 276
V PNC R + V+ G PN +L S
Sbjct: 220 VTPNCHRVTEVPYAISSGSRLSFDDRTRSCKKLVDF-----RGTPN---------ELSSR 265
Query: 277 VDQYLQIRGCA--KPARDIETHFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITG 334
V L+I K I K +A N + L +K + + K + S R+V+ G
Sbjct: 266 VLDCLRISKLNPDKTPNSIFADIQQRKIGENACNSSGLRWIKDVVLGKRNDSSLRTVVVG 325
Query: 335 DGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLVDENLCLAYKEGVSTYSLREGSKG 394
D ++EVGIP IA+ + E VN N L + L K V R GSK
Sbjct: 326 DPDLELSEVGIPCHIAESLQVSEYVNRQNREKLLYCCELRLLEKGKIDVC----RNGSKV 381
Query: 395 HTY----LKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALVVYIHD-DHTVKINPLICGP 449
H Y L+ G ++R + DGD V INRPP+ H+HS+ AL V + V INPL C P
Sbjct: 382 HLYKKEDLQIGDKIYRPLADGDKVLINRPPSIHQHSMIALTVRVLPISSVVCINPLCCSP 441
Query: 450 LGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKK 509
L DFDGDC+H + PQS+ A+ E+ EL ++++QL++ ++
Sbjct: 442 LRGDFDGDCLHGYIPQSVTARIELNELVALDRQLINGQSGRNLLSLSQDSLTAAYLLMED 501
Query: 510 GFMDRAAANQMAMFLSLP---LPQPALLKAGSGDC-YWTSTQILQCALPLSFD------- 558
G + Q LS+ L PA++KA S + W+ QI LP FD
Sbjct: 502 GVLLNVYQMQQLQMLSISDKRLIPPAVVKAPSSNSSLWSGKQIFSMLLPYDFDYSFPSDG 561
Query: 559 -CTGGRYLIRESDILGF--DLGRDVLPAVINEIAASVFFGKGPQEALNFFDVLQPFLMEC 615
L+ S+ G+ D +V +++ + GK LNF Q L E
Sbjct: 562 VVVSDGELVSSSEASGWLRDSDYNVFQSLVEH-----YQGK----TLNFLYTAQKVLCEW 612
Query: 616 IFSNGFSVGLHDFSIS---------------------------------------GAVKR 636
+ GFSV L D +S G+++
Sbjct: 613 LSMTGFSVSLSDLYLSSDSYARKNMIEEIFYGLQDAEQACNFKQLLLDCYCDFLSGSIQE 672
Query: 637 ITDRNIGKVSPLLY--QLRFIYNELVAQQLEKHMQDIELPAIKFASKSSRLGDMIDSKSK 694
+ L Y Q+ ++ + ++I+ A K+A K + M + SK
Sbjct: 673 SENAITVDADRLNYERQISAALSQASVDAFRQVFRNIQSLADKYACKDNAFLAMFKAGSK 732
Query: 695 SALDKVTQQIGFLGQQ---LFVRGRL-------------------YSKGLLEDVASHFKL 732
L K+ Q LG Q + + RL S G LE V S+
Sbjct: 733 GNLLKLVQHSMCLGMQNSLVRLSYRLPRHLSCAAWNSQKWLDSIQMSSGTLESVQSYI-- 790
Query: 733 KCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMA 792
Y +++ F GL+P E VHS++ R+ L PGTL + LM
Sbjct: 791 ------------PYAVVESSFLTGLNPLECFVHSVTNRDSSFSDHADL--PGTLTRRLMF 836
Query: 793 ILRDVVVCYDGTVRNVCSNSIIQFEYGLKAGDNASYLFP----AGEHVGVLAATAMSNPA 848
+RD+ YDGTVRN+ N +IQF Y ++ + F GE VG ++A A+S A
Sbjct: 837 FMRDLHDAYDGTVRNLYGNQLIQFSYDIEEDSSCDKGFQEYAIGGEPVGAISACAISEAA 896
Query: 849 YKAV------LDASPSSNCSWELMKEILLCKVHFRNEPIDRRVILYLNDCDCGRSYCREN 902
Y A+ L+ SP N +K +L C RN D+ V L+L++ + + E
Sbjct: 897 YSALGQPVSLLETSPLLN-----LKNVLECGSRKRNG--DQTVSLFLSEKLGKQRHGFEY 949
Query: 903 AAYAVKNQLRKVSLKDTAVDFIVEYQQQRKRKGSEIDAGLVGHIHLDE--VKLEELKIN- 959
AA VKN L ++ + ++ + E + V H HLD+ V +LK++
Sbjct: 950 AALEVKNYLERLLFSNIVSTVMIIFTPH-DGSSQEKYSPWVCHFHLDKEIVTRRKLKVHS 1008
Query: 960 -MAEVFQR----------CQEKLDSFNRKRKFNQIFKRTELFFSESCVSPNFSAPCLTFI 1008
+ ++QR C L ++K + + K E ++ + C+T
Sbjct: 1009 IIDSLYQRYYSQRKDSKVCFTNLKISSKKCSADSMAKEGE----DTSIDKKEGDDCITVT 1064
Query: 1009 WPAGDGNDLHETTKILADTICPALLDTIIQGDPRINSANIIWVNPDTNTWVRNPSKSSNG 1068
N + + + D + P LL T I+G + +++W N + V+N +G
Sbjct: 1065 IVENSKNPIQLDS--VRDLVIPFLLGTAIKGFLDVKKVDVLWNN---QSKVKNSCNGFSG 1119
Query: 1069 ELALDIILEKESIKQNGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQIQELLGISCTFDQA 1128
EL L + L E + G W ++L+ C ++H+ID RS P I GI +
Sbjct: 1120 ELYLRVTLSSEGSR--GRFWGVLLNLCHKIMHIIDWTRSHPDNINHFSSAYGIDAGWQYF 1177
Query: 1129 IQRLAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDATLF 1188
LA++ K +L +HL L+A+S++C G VG N G + ++ PF A
Sbjct: 1178 FNSLASATSDTGKSILPKHLCLVANSLSCSGEFVGLNAKGMALQRKHASVSSPFVQACFA 1237
Query: 1189 TPKRCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSKFDVLWDAKEIKSNDL 1241
P CF +AA+ TD+L + + +WG +++GT FD+++ K KS ++
Sbjct: 1238 NPGSCFIKAAKSGVTDNLQGSLDALAWGNCLSMGTSGMFDIIYSEKVAKSGNV 1290
>K7K551_SOYBN (tr|K7K551) DNA-directed RNA polymerase OS=Glycine max PE=3 SV=1
Length = 1454
Score = 339 bits (869), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 351/1319 (26%), Positives = 543/1319 (41%), Gaps = 188/1319 (14%)
Query: 48 LGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKMK-K 106
LGLP C +CGT + CEGHFG I+ P PI HP + E+ +L+ +C C ++ K
Sbjct: 48 LGLPNASDECATCGTKDKKFCEGHFGVIKFPTPILHPYFMLEIAHILNKICPVCKSIRHK 107
Query: 107 TKFPSSSSGLAQRLLSPCCQEPNAAQVSIREVKTGDGACYLV-LKVSK----SKMQDGFW 161
+K G + C + Q + +V +K SK +++ FW
Sbjct: 108 SKGARLIYGTKRSNDCNYCSVYPSMQFRVSSNDLFRRTAIIVEVKASKKTLGTEIPADFW 167
Query: 162 RFLDKYGYRYE-VDHTRALLPCEVMEMIKRFPLETKKKLAGKGYFPQDGYV-IKYLPVPP 219
F+ + E + R L P +V ++ + +K Y P+ + + PV P
Sbjct: 168 NFIPCDAQQEENYVNRRVLSPVQVNYLLNDVDPDFIEK-----YIPRKNLLCLNCFPVTP 222
Query: 220 NCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEVIRSSRSGEPNFESHQVEANDLQSVVDQ 279
NC R + V+ + AN+L S V
Sbjct: 223 NCHRVTEVPYAISSGSRLSFDDRTRSCKKLVDF--------------RGTANELSSRVLD 268
Query: 280 YLQIRGCA--KPARDIETHFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGY 337
L+I K I K +A N + L +K + + K + S R+V+ GD
Sbjct: 269 CLRISKLNPDKTPNSIFADIQQRKIGENAFNSSGLRWIKDVVLGKRNDSSFRTVVVGDPD 328
Query: 338 KRINEVGIPHEIAQRITFEERVNSHNMCYLQKLVDENLCLAYKEGVSTYSLREGSKGHTY 397
++E+GIP IA+ + E VN N L + +L K V R+GS H Y
Sbjct: 329 LELSEIGIPCHIAESLQVSEYVNRQNREKLLYCCELHLLEKGKINVC----RKGSIVHLY 384
Query: 398 ----LKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALVVYIHD-DHTVKINPLICGPLGA 452
L+ G +R + DGD V INRPP+ H+HS+ +L V + V INPL C PL
Sbjct: 385 KKEDLQIGDKFYRPLADGDKVLINRPPSIHQHSMISLTVRVLPISSVVCINPLCCSPLRG 444
Query: 453 DFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKKGFM 512
DFDGDC+H + PQS+ A+ E+ EL ++++QL++ ++ G +
Sbjct: 445 DFDGDCLHGYIPQSVTARIELNELVALDRQLINGQSGRNLLSLSQDSLTAAYLLMEDGVL 504
Query: 513 DRAAANQMAMFLSLP---LPQPALLKAGSGDC-YWTSTQILQCALPLSFD--------CT 560
Q LS+ L PA++KA S + W Q+ LP FD
Sbjct: 505 LNVYQMQQLQMLSISNKRLIPPAVVKAPSSNSSLWNGKQLFSMLLPYDFDYSFPSDGVVV 564
Query: 561 GGRYLIRESDILGF--DLGRDVLPAVINEIAASVFFGKGPQEALNFFDVLQPFLMECIFS 618
L+ S+ G+ D +V +++ + GK LNF Q L E +
Sbjct: 565 SDGELVSSSEASGWLRDSDYNVFQSLVEH-----YQGK----TLNFLYAAQKVLCEWLSM 615
Query: 619 NGFSVGLHDFSIS-------GAVKRI------TDRNIGKVSPLL-YQLRFI--------- 655
GFSV L D +S ++ I +R LL Y F+
Sbjct: 616 TGFSVSLSDLYLSSDSYARENMIEEIFYGLQDAERACNFKQLLLDYYCDFLSGSLQESEN 675
Query: 656 ----------YNELVAQQLEKH--------MQDIELPAIKFASKSSRLGDMIDSKSKSAL 697
Y ++ L + ++I+ A K+A K + M + SK L
Sbjct: 676 AITVNADRLNYERQISASLSQASVDAFRQVFRNIQSLADKYACKGNSFLAMFKAGSKGNL 735
Query: 698 DKVTQQIGFLGQQ---LFVRGRL-------------------YSKGLLEDVASHFKLKCD 735
K+ Q LG Q + + RL S G LE V S+
Sbjct: 736 LKLVQHSMCLGMQNSLVRLSYRLPRHLSCADWNSQKWVDSIQMSSGTLESVQSYI----- 790
Query: 736 YDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILR 795
Y +++ F GL+P E VHS++ R+ L PGTL + LM +R
Sbjct: 791 ---------PYAVVESSFLTGLNPLECFVHSVTNRDSSFSDHADL--PGTLTRRLMFFMR 839
Query: 796 DVVVCYDGTVRNVCSNSIIQFEYGLKAGDNASYLFP----AGEHVGVLAATAMSNPAYKA 851
D+ YDGTVRN+ N +IQF Y ++ + + F GE VG ++A A+S AY A
Sbjct: 840 DLYDAYDGTVRNLYGNQLIQFSYDIEEDSSCNKGFQQYALGGESVGAISACAISEAAYSA 899
Query: 852 V------LDASPSSNCSWELMKEILLCKVHFRNEPIDRRVILYLNDCDCGRSYCRENAAY 905
+ L+ SP N +K +L C RN D+ V L+L++ + + E AA
Sbjct: 900 LGQPVSLLETSPLLN-----LKNVLECGSRKRNG--DQTVSLFLSEKLGKQRHGFEYAAL 952
Query: 906 AVKNQLRKVSLKDTAVDFIVEYQQQRKRKGSEIDAGLVGHIHLDE--VKLEELKIN--MA 961
VKN L ++ + ++ + R E + V H HLD+ V +LK++ +
Sbjct: 953 EVKNYLERLLFSNIVSKVMIIFTPHDSR-SQEKYSPWVCHFHLDKEIVTRRKLKVHSIID 1011
Query: 962 EVFQR----------CQEKLDSFNRKRKFNQIFKRTELFFSESCVSPNFSAPCLTFIWPA 1011
++QR C L +RK + + K E ++ + C+
Sbjct: 1012 SLYQRYYSQRKDSKVCFTNLKISSRKCSADSMVKEGE----DTSIDKEEGDDCIMVTIVE 1067
Query: 1012 GDGNDLHETTKILADTICPALLDTIIQGDPRINSANIIWVNPDTNTWVRNPSKSSNGELA 1071
N + + + D + P LL T IQG + +I+W N T RN +GEL
Sbjct: 1068 NSKNPIQLDS--VRDLVIPFLLGTAIQGFLDVKKVDILWNNQSKVTNSRN---GFSGELY 1122
Query: 1072 LDIILEKESIKQNGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQIQELLGISCTFDQAIQR 1131
L + L E + G W ++L C ++H+ID RS I GI +
Sbjct: 1123 LRVTLSSEGSR--GRFWGVLLKLCHKIMHIIDWTRSHTDNINHFSSAYGIDAGWQYFFNS 1180
Query: 1132 LAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDATLFTPK 1191
LA + K +L +HL L+A+S++C G VG N G + ++ PF A P
Sbjct: 1181 LACATSDTGKSILPKHLCLVANSLSCSGEFVGLNAKGMALQRKHASVSSPFVQACFANPG 1240
Query: 1192 RCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSKFDVLWDAKEIKSNDLDGMDVYNFL 1250
CF +AA+ TD+L + +WG +++GT FDV++ K KS +DVY L
Sbjct: 1241 SCFIKAAKSGATDNLQGSLDGLAWGNCLSMGTSGMFDVIYSEKVAKS-----VDVYELL 1294
>I1JA29_SOYBN (tr|I1JA29) DNA-directed RNA polymerase OS=Glycine max PE=3 SV=2
Length = 1457
Score = 336 bits (861), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 349/1319 (26%), Positives = 542/1319 (41%), Gaps = 185/1319 (14%)
Query: 48 LGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKMK-K 106
LGLP C +CGT + CEGHFG I+ P PI HP + E+ +L+ +C C ++ K
Sbjct: 48 LGLPNASDECATCGTKDKKFCEGHFGVIKFPTPILHPYFMLEIAHILNKICPVCKSIRHK 107
Query: 107 TKFPSSSSGLAQRLLSPCCQEPNAAQVSIREVKTGDGACYLV-LKVSK----SKMQDGFW 161
+K G + C + Q + +V +K SK +++ FW
Sbjct: 108 SKGARLIYGTKRSNDCNYCSVYPSMQFRVSSNDLFRRTAIIVEVKASKKTLGTEIPADFW 167
Query: 162 RFLDKYGYRYE-VDHTRALLPCEVMEMIKRFPLETKKKLAGKGYFPQDGYV-IKYLPVPP 219
F+ + E + R L P +V ++ + +K Y P+ + + PV P
Sbjct: 168 NFIPCDAQQEENYVNRRVLSPVQVNYLLNDVDPDFIEK-----YIPRKNLLCLNCFPVTP 222
Query: 220 NCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEVIRSSRSGEPNFESHQVEANDLQSVVDQ 279
NC R + V+ + AN+L S V
Sbjct: 223 NCHRVTEVPYAISSGSRLSFDDRTRSCKKLVDF--------------RGTANELSSRVLD 268
Query: 280 YLQIRGCA--KPARDIETHFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGY 337
L+I K I K +A N + L +K + + K + S R+V+ GD
Sbjct: 269 CLRISKLNPDKTPNSIFADIQQRKIGENAFNSSGLRWIKDVVLGKRNDSSFRTVVVGDPD 328
Query: 338 KRINEVGIPHEIAQRITFEERVNSHNMCYLQKLVDENLCLAYKEGVSTYSLREGSKGHTY 397
++E+GIP IA+ + E VN N L + +L K V R+GS H Y
Sbjct: 329 LELSEIGIPCHIAESLQVSEYVNRQNREKLLYCCELHLLEKGKINVC----RKGSIVHLY 384
Query: 398 ----LKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALVVYIHD-DHTVKINPLICGPLGA 452
L+ G +R + DGD V INRPP+ H+HS+ +L V + V INPL C PL
Sbjct: 385 KKEDLQIGDKFYRPLADGDKVLINRPPSIHQHSMISLTVRVLPISSVVCINPLCCSPLRG 444
Query: 453 DFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKKGFM 512
DFDGDC+H + PQS+ A+ E+ EL ++++QL++ ++ G +
Sbjct: 445 DFDGDCLHGYIPQSVTARIELNELVALDRQLINGQSGRNLLSLSQDSLTAAYLLMEDGVL 504
Query: 513 DRAAANQMAMFLSLP---LPQPALLKAGSGDC-YWTSTQILQCALPLSFD--------CT 560
Q LS+ L PA++KA S + W Q+ LP FD
Sbjct: 505 LNVYQMQQLQMLSISNKRLIPPAVVKAPSSNSSLWNGKQLFSMLLPYDFDYSFPSDGVVV 564
Query: 561 GGRYLIRESDILGF--DLGRDVLPAVINEIAASVFFGKGPQEALNFFDVLQPFLMECIFS 618
L+ S+ G+ D +V +++ + GK LNF Q L E +
Sbjct: 565 SDGELVSSSEASGWLRDSDYNVFQSLVEH-----YQGK----TLNFLYAAQKVLCEWLSM 615
Query: 619 NGFSVGLHDFSISG-------AVKRI------TDRNIGKVSPLL-YQLRFI--------- 655
GFSV L D +S ++ I +R LL Y F+
Sbjct: 616 TGFSVSLSDLYLSSDSYARENMIEEIFYGLQDAERACNFKQLLLDYYCDFLSGSLQESEN 675
Query: 656 ----------YNELVAQQLEKH--------MQDIELPAIKFASKSSRLGDMIDSKSKSAL 697
Y ++ L + ++I+ A K+A K + M + SK L
Sbjct: 676 AITVNADRLNYERQISASLSQASVDAFRQVFRNIQSLADKYACKGNSFLAMFKAGSKGNL 735
Query: 698 DKVTQQIGFLGQQ---LFVRGRL-------------------YSKGLLEDVASHFKLKCD 735
K+ Q LG Q + + RL S G LE V S+
Sbjct: 736 LKLVQHSMCLGMQNSLVRLSYRLPRHLSCADWNSQKWVDSIQMSSGTLESVQSYI----- 790
Query: 736 YDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILR 795
Y +++ F GL+P E VHS++ R+ L PGTL + LM +R
Sbjct: 791 ---------PYAVVESSFLTGLNPLECFVHSVTNRDSSFSDHADL--PGTLTRRLMFFMR 839
Query: 796 DVVVCYDGTVRNVCSNSIIQFEYGLKAGDNASYLFP----AGEHVGVLAATAMSNPAYKA 851
D+ YDGTVRN+ N +IQF Y ++ + + F GE VG ++A A+S AY A
Sbjct: 840 DLYDAYDGTVRNLYGNQLIQFSYDIEEDSSCNKGFQQYALGGESVGAISACAISEAAYSA 899
Query: 852 V------LDASPSSNCSWELMKEILLCKVHFRNEPIDRRVILYLNDCDCGRSYCRENAAY 905
+ L+ SP N +K +L C RN D+ V L+L++ + + E AA
Sbjct: 900 LGQPVSLLETSPLLN-----LKNVLECGSRKRNG--DQTVSLFLSEKLGKQRHGFEYAAL 952
Query: 906 AVKNQLRKVSLKDTAVDFIVEYQQQRKRKGSEIDAGLVGHIHLDE--VKLEELKIN--MA 961
VKN L ++ + ++ + R E + V H HLD+ V +LK++ +
Sbjct: 953 EVKNYLERLLFSNIVSKVMIIFTPHDSR-SQEKYSPWVCHFHLDKEIVTRRKLKVHSIID 1011
Query: 962 EVFQR----------CQEKLDSFNRKRKFNQIFKRTELFFSESCVSPNFSAPCLTFIWPA 1011
++QR C L +RK + + K E ++ + C+
Sbjct: 1012 SLYQRYYSQRKDSKVCFTNLKISSRKCSADSMVKEGE----DTSIDKEEGDDCIMVTIVE 1067
Query: 1012 GDGNDLHETTKILADTICPALLDTIIQGDPRINSANIIWVNPDTNTWVRNPSKSSNGELA 1071
N + + + D + P LL T IQG + +I+W N T RN +GEL
Sbjct: 1068 NSKNPIQLDS--VRDLVIPFLLGTAIQGFLDVKKVDILWNNQSKVTNSRN---GFSGELY 1122
Query: 1072 LDIILEKESIKQNGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQIQELLGISCTFDQAIQR 1131
L + L E + G W ++L C ++H+ID RS I GI +
Sbjct: 1123 LRVTLSSEGSR--GRFWGVLLKLCHKIMHIIDWTRSHTDNINHFSSAYGIDAGWQYFFNS 1180
Query: 1132 LAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDATLFTPK 1191
LA + K +L +HL L+A+S++C G VG N G + ++ PF A P
Sbjct: 1181 LACATSDTGKSILPKHLCLVANSLSCSGEFVGLNAKGMALQRKHASVSSPFVQACFANPG 1240
Query: 1192 RCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSKFDVLWDAKEIKSNDLDGMDVYNFL 1250
CF +AA+ TD+L + +WG +++GT FDV++ K + +DVY L
Sbjct: 1241 SCFIKAAKSGATDNLQGSLDGLAWGNCLSMGTSGMFDVIYSEKGHQV--AKSVDVYELL 1297
>M5WEG2_PRUPE (tr|M5WEG2) Uncharacterized protein OS=Prunus persica
GN=PRUPE_ppa000278mg PE=4 SV=1
Length = 1356
Score = 333 bits (853), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 342/1304 (26%), Positives = 544/1304 (41%), Gaps = 220/1304 (16%)
Query: 12 GNVVGIQFGMATRQEICTXXXXXXXXXXXXXXXNPFLGLPLEYGRCESCGTSEAGKCEGH 71
G + GI ++T+++I +P LGLP +C +CG + CEGH
Sbjct: 14 GLITGIHLNVSTQEDI--ENISVKQIDAVTEVTDPKLGLPNPSFQCSTCGAEKLKCCEGH 71
Query: 72 FGYIELPVPIYHPSHVSELKKMLSLVCLNC--------LKMKKTKFPSSSSGLAQRLLSP 123
FG I+ P I HP ++SE+ ++L+ +C C K+ + S + R L
Sbjct: 72 FGDIKFPCTILHPYYLSEVTQILNKICPGCKSIRQNLRAKVSNRTLRGAGSVIGHRKLKG 131
Query: 124 C-------CQEPNAA-QVSIREVKTGDGACYLVLKVSKSKMQDGFWRFLDKYGYRYEV-- 173
C P +VS RE+ ++ + + +W F+ K + E
Sbjct: 132 CKYCIGSSINYPRMKFKVSTRELFKRSA----IIAEANGILPADYWDFIPKDAQQDESCM 187
Query: 174 -DHTRALLPCEVMEMIKRFPLETKKKLAGKGYFPQDGYVIKYLPVPPNCLXXXXXXXXXX 232
+ R L +V ++K + +K+ K G + V PNC
Sbjct: 188 KPNKRVLSHAQVHYLLKDVDTKFIEKIVPKTNSLSMGSFL----VTPNCH---------- 233
Query: 233 XXXXXXXXTFLRKLLRKVEVIRSSRSGEPNFESHQVEANDLQSVVDQYLQIRGCAKPARD 292
R EV+ S +G Q L + R
Sbjct: 234 ---------------RVTEVMHSFSNG-------------------QRLMFDERTRAYRK 259
Query: 293 IETHFGVNKELS--DASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIA 350
+ GV EL D S + L +K + + K S R+V+ GD +++E+GIP +IA
Sbjct: 260 LVDFKGVANELGSHDPSKTSGLRWIKDVVLGKRSDHCFRTVVVGDPNIKLSEIGIPCQIA 319
Query: 351 QRITFEERVNSHNMCYLQKLVDENLCLAYKEGVSTYSLREGS----KGHTYLKPGQIVHR 406
+R+ E +N N ++KL D + L + R+GS + L+ G ++R
Sbjct: 320 ERLQISENLNRWN---IEKL-DASCNLRLMVKGEMHVRRKGSLVWVRQTDELQMGDTIYR 375
Query: 407 RIMDGDIVFINRPPTTHKHSLQALVVYIHD-DHTVKINPLICGPLGADFDGDCVHLFYPQ 465
+ DGDIV INRPP+ H+HSL AL V I V INPL C P DFDGDC+H + PQ
Sbjct: 376 PLSDGDIVLINRPPSIHQHSLIALSVKILPITSVVSINPLCCSPFRGDFDGDCLHGYIPQ 435
Query: 466 SLAAKAEVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKKG-FMDRAAANQMAMFL 524
S A+ E+ EL +++KQL++ ++ G ++ Q+ MF
Sbjct: 436 SNDARVELRELVALDKQLINGQSGRNLLSLSQDSLTAAHLIMEDGTLLNLLEMQQLEMFC 495
Query: 525 SLPLPQPALLKAGSGDCYWTSTQILQCALP---LSFDCTGGRYLIRESDILGFDLGRDVL 581
LP PA++KA S + +W S + L +L L+ D +G R + E + G
Sbjct: 496 WDVLPSPAVIKAPSLNSHWLSMRGLSVSLADLYLASD-SGSRNNLMEEILCG-------- 546
Query: 582 PAVINEIAASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHDFSISGAVKRITDRN 641
+ E + F + D Q FLM C N
Sbjct: 547 ---LQEAEQACIFKQL------LVDNCQDFLMGCAEENR--------------------- 576
Query: 642 IGKVSPLLYQLRFIYNE--------LVAQQLEKHM-QDIELPAIKFASKSSRLGDMIDSK 692
SPL + + +E V KH+ +DI+ A K+A K + L M+ +
Sbjct: 577 ----SPLTFDAEYFCHEKQKSAALSQVVHDAFKHIFRDIQSLAHKYAGKDNSLLTMLKAG 632
Query: 693 SKSALDKVTQQIGFLGQQ---LFVRGRLYSK------------GLLEDVASHFKLKCDYD 737
SK L K+ Q LG Q + + R+ ++ L++ V ++ Y
Sbjct: 633 SKGNLQKLVQHSMCLGLQHSLIPLSFRIPNQLSCAAWNNQKACSLIQKVEGTYECVESY- 691
Query: 738 GDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDV 797
PSA ++K F GL+P E VHS+++R+ + L PGTL + LM ++RD+
Sbjct: 692 ---IPSA---VVKSSFLTGLNPLECFVHSVTSRDSSFSGNADL--PGTLTRKLMFLMRDL 743
Query: 798 VVCYDGTVRNVCSNSIIQFEYGL-----------KAGDNASYLFPAGEHVGVLAATAMSN 846
YDGTVRN N ++QF Y + A + G+ VG L+A A+S
Sbjct: 744 YTAYDGTVRNAYGNQLVQFSYDIDMDKSDSTSTSHAKSTTACDGIGGQPVGSLSACALSE 803
Query: 847 PAYKAV------LDASPSSNCSWELMKEILLCKVHFRNEPIDRRVILYLNDCDCGRSYCR 900
AY A+ L+ SP N +K IL C + + + L+L+ R +
Sbjct: 804 AAYSALDQPVSLLETSPLLN-----LKNILECGS--KKSSAKQTLSLFLSKKLGRRRHGF 856
Query: 901 ENAAYAVKNQLRKVSLKD--TAVDFIVEYQQQRKRKGSEIDAGLVGHIHL--DEVKLEEL 956
E A VKN L ++ D + V I Q +++ S V H H+ + V+ L
Sbjct: 857 EYGALEVKNHLVGLTFSDIVSTVMIIFSSQSNSQKRFSP----WVTHFHICKEIVRKRRL 912
Query: 957 KIN--MAEVFQRCQEKLDSFNRKRKFNQIFKRTELFFSESCVSPNF-----SAPCLTFIW 1009
K++ + ++ RC N R +I R+ L S+ C + C+T
Sbjct: 913 KVHSVVDSLYARC-------NSARPELKIVLRSLLITSKGCSAAQTCNGDDDTFCITVTM 965
Query: 1010 PAGDGNDLHETTKILADTICPALLDTIIQGDPRINSANIIWVNPDTNTWVRNPSK--SSN 1067
P N E I D + P LL T+++G + +I+W N R K S+
Sbjct: 966 PENSKNS-SEQLDIARDLVIPFLLGTVVKGFLEVKKVDILW-----NDHPRESKKIHGSS 1019
Query: 1068 GELALDIILEKESIKQNGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQIQELLGISCTFDQ 1127
GEL L + + ++ ++ W +++D+CL ++ LID RS P + GI +
Sbjct: 1020 GELYLRVSMSGKTGRRR--LWSMLMDNCLQIMDLIDWSRSHPDNVHDYCIAYGIDAGWKY 1077
Query: 1128 AIQRLAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDATL 1187
+ L + + K +L +HLIL+A ++ G VG N G ++ PF A
Sbjct: 1078 FLNNLETAANDIGKDILPQHLILVADCLSATGEFVGLNAKGIAQQKGHTSVSSPFVQACF 1137
Query: 1188 FTPKRCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSKFDVLW 1231
+P CF +AA+ D L V + +WG GTG +FD+L+
Sbjct: 1138 SSPGACFIKAAKGGVVDELHGSVEALAWGNTPPSGTGRQFDILY 1181
>J3MZZ4_ORYBR (tr|J3MZZ4) DNA-directed RNA polymerase OS=Oryza brachyantha
GN=OB09G25730 PE=3 SV=1
Length = 1779
Score = 332 bits (852), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 340/1318 (25%), Positives = 559/1318 (42%), Gaps = 172/1318 (13%)
Query: 45 NPFLGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKM 104
N LGLP +C +CG C+GHFG I+L +++P + E+ ++L+ +C CL +
Sbjct: 354 NAKLGLPNGAPQCATCGFRNIRDCDGHFGVIKLAATVHNPYFIEEVVQLLNQICPGCLTL 413
Query: 105 KK---TKFPSSSSGLAQRLLSPCCQEPNAAQVSI------------------REVKTGDG 143
K+ TK Q C ++ SI R D
Sbjct: 414 KQNGETKLKKGDGTTIQATCKYCSKDGAKLYPSIIFKMLTSPRVTLSRSKLHRNTSVMDK 473
Query: 144 ACYL------VLKVSKSK-----MQDGFWRFLDKYGYRYEVDHTRALL-PCEVMEMIKRF 191
+ V SK+K + FW FL + + T+ +L P +V M+K+
Sbjct: 474 MSIIAEVASRVTHKSKNKVPHEILPQDFWDFLPDDNQPPQSNVTKKILSPYQVFHMLKKI 533
Query: 192 PLETKKKLAGKGYFPQDGYVIKYLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVE 251
E ++ + ++ + LPV PNC + R V+
Sbjct: 534 DPELINQVTPR----RELLFLSCLPVTPNCHRVVEMPYGHSDGPRLAFDDRTKAYKRMVD 589
Query: 252 VIR--SSRSGEPNFESHQVEANDLQSVVDQYLQIRGCAKPARDIETHFGVNKELSDASNK 309
V R P F + A + S V + L+ D G + +D
Sbjct: 590 VSRRIDDYRQHPQFGVYASSA--VTSRVMECLKSSKLYSRKSD-----GESSTSTDTYGT 642
Query: 310 AWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNM----- 364
WL K + +SK S + RSV+ GD +NE+G+P ++A + E+V+S+N
Sbjct: 643 KWL---KDIILSKRSDNAFRSVMVGDPKINLNEIGMPMDLALNLVVSEQVSSYNFETINL 699
Query: 365 -CYLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTH 423
C L L E L L + G + +R+ +K L+ G I +R + DGD++ +NRPP+ H
Sbjct: 700 KCNLHLLTKEVL-LVRRNGRLIF-IRKANK----LEIGDIAYRPLQDGDLILVNRPPSVH 753
Query: 424 KHSLQALVVYIHDDHT-VKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQ 482
+HSL AL I H+ V INPL CGP DFDGDC+H + PQSL ++ E+ EL + Q
Sbjct: 754 QHSLIALSAKILSSHSAVSINPLCCGPFQGDFDGDCLHGYVPQSLQSRVELDELVGLSGQ 813
Query: 483 LLSSHXXXXXXXXXXXXXXXXXXXVKKG-FMDRAAANQMAMFLSL--PLPQPALLKAG-S 538
LL++ F+ +A Q+ M S P P++LK+ S
Sbjct: 814 LLNAQDGRSLVSLTHDSLTAAHQLTSSDVFLQKAEFQQLQMLCSSVSSTPMPSILKSSKS 873
Query: 539 GDCYWTSTQILQCALPLSFDCTGGRYL-IRESDILGFDLGRDVLPAVINEIAASVFFGKG 597
WT Q+ +P + L I++S++L F G L + + SV F +
Sbjct: 874 QGPLWTGKQLFGMLIPSGMNINFDEKLHIKDSEVLAFSSGSFWLQNNTSSLF-SVMFEEY 932
Query: 598 PQEALNFFDVLQPFLMECIFSNGFSVGLHDFSI-SGAVKRITDRNIGKVSPLL------Y 650
+AL F Q L E + G SV L DF + S R + I +V L +
Sbjct: 933 GCKALEFLSSSQDVLCEFLTMRGLSVSLSDFYLLSDHYSR--RKLIEEVHLALDEAEEAF 990
Query: 651 QLRFIY---------------NELVAQQLEKHMQDIELPAIK------------------ 677
Q++ I ++L+ + + LP I+
Sbjct: 991 QIKQILLNPVSIPYLKYYDGADDLLNSYEQSDYTQVSLPIIQSSITSFKSVFNDLLKMVH 1050
Query: 678 -FASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQL---FVRGRLYSKGLLEDVASHFKLK 733
ASK + + MI+S SK ++ K QQ +G QL R+ S+ H L
Sbjct: 1051 QHASKDNSMMAMINSGSKGSVLKFVQQTACVGLQLPASIFPFRIPSELSCVSWNRHKSLN 1110
Query: 734 CDY-DGDGYPSAE---YGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKN 789
C+ DG Y +++ F GL+P E L+H+IS R S PGTL +
Sbjct: 1111 CEMTDGTSERMGGQNIYAVIRNSFLDGLNPLECLLHAISGRANFF--SENADVPGTLTRK 1168
Query: 790 LMAILRDVVVCYDGTVRNVCSNSIIQFEYGLKAGDNASYLFPA--GEHVGVLAATAMSNP 847
LM LRD V YDGTVR+ I+QF Y G + G VG AA ++S
Sbjct: 1169 LMYHLRDTYVAYDGTVRSSYGQQIVQFSYNTADGMFRDHDLEGEPGAPVGSWAACSISEA 1228
Query: 848 AYKAV------LDASPSSNCSWELMKEILLCKVHFRNEPIDRRVILYLNDCDCGRSYCRE 901
AY A+ L+ SP N ++E+L C+ ++ +D +L+L+ Y E
Sbjct: 1229 AYGALDHPVNALEDSPLMN-----LQEVLKCRKSTKS--VDHTGLLFLSKHLRKYRYGFE 1281
Query: 902 NAAYAVKNQLRKVSLKDTAVDFIVEY--QQQRKRKGSEIDAGLVGHIHLDEVKLEELKIN 959
A+ VK+ L +V D ++ Y +K +G+ + H HL + E +KI
Sbjct: 1282 YASLQVKDHLERVDFSDLVDAVMILYGGSDMQKTQGNP----WITHFHLSQ---ETMKIK 1334
Query: 960 MAEVFQRCQEKLDSFNRKRKFNQIFKRTELFFSESCVSPNFSAP----CLTFIWPAGDGN 1015
+ +E ++ +N RK + + + +C N C+T + A +
Sbjct: 1335 RLRLGFIVRELIEQYNALRKQSNNTIPSVCISNSNCSVGNECVKNCTCCITMV--AQVES 1392
Query: 1016 DLHETTKILADTICPALLDTIIQGDPRINSANIIWVNPDTNTWVRNPSKSSNGELALDII 1075
+ I+ + + P++L+T+++G + + + + EL + +
Sbjct: 1393 NSTSQLNIIKERVIPSILETLLKGFLEFKNVKVEY--------------QQDSELVVKVG 1438
Query: 1076 LEKESIKQNGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQIQELLGISCTFDQAIQRLAAS 1135
+ + ++G W + ++C+P++ LID RS P + I GI + ++ L ++
Sbjct: 1439 MSEHC--KSGKFWAALQNACIPIMELIDWERSQPERVNDIFCSYGIDSAWKFFVESLRST 1496
Query: 1136 VKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDATLFTPKRCFE 1195
+ + + R+HL+++A ++ G G + G K L+I PF++A P F
Sbjct: 1497 TDAIGRNIRRQHLLVVADCLSVSGQFHGLTSQGLKHQRTSLSISSPFSEACFSRPAHSFI 1556
Query: 1196 RAAEKCHTDSLSSIVASCSWGKPVAVGTGSKFDVLWDAK--EIKSNDLDGMDVYNFLH 1251
AA++ D+LS + + +WGK VGT F +L+ K E K N+ ++Y+FLH
Sbjct: 1557 NAAKQDSVDNLSGTLDAIAWGKEPCVGTSGPFKILYSGKSLETKQNE----NIYDFLH 1610
>Q1L5Y1_9MONI (tr|Q1L5Y1) DNA-directed RNA polymerase (Fragment) OS=Ceratopteris
thalictroides GN=RPD1 PE=2 SV=1
Length = 836
Score = 332 bits (851), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 259/858 (30%), Positives = 397/858 (46%), Gaps = 97/858 (11%)
Query: 452 ADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKKG- 510
ADFDGDC+ +F PQSL +K EV EL VE Q+L+SH
Sbjct: 2 ADFDGDCLAVFVPQSLESKTEVKELMMVENQMLTSHGGQCTFTLTQDALLGACKLTSPHL 61
Query: 511 FMDRAAANQMAMFLSLPLPQPALLKAGSGDCYWTSTQILQCALP--LSFDCTGGRYLIRE 568
F+ R M S LP+PA++K+ G +WT Q Q +LP +++D G R I
Sbjct: 62 FLSRQTMEIACMNTSSTLPKPAVIKSPKGP-FWTGVQCFQLSLPSAVNYDMNGVR--ISC 118
Query: 569 SDILGFDLGRDVLPAVINEIAASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHDF 628
+IL + L N + + G ALN+ ++ L+E I GF+VGL+D
Sbjct: 119 GEILNITHDPEWLGGSRNSLLYQIIQQFGGNVALNYLGAVESLLVEWISRKGFTVGLYDV 178
Query: 629 SISG------AVKRITDRNIG--------KVSPLLYQ---------------------LR 653
+ +K+ NIG K+ L Q +
Sbjct: 179 YATADWTTRDKLKKAIQVNIGEEEKQVRRKLQDLSLQSDISLGEMKLSMGLSVESNAIIP 238
Query: 654 FIYNELVAQQLEKHMQ----DIELPAIKFASKSSRLGDMIDSKSKSALDKVTQQIGFLGQ 709
+Y+ + + K+MQ IE ++K A+ + + +M+ SK ++ K ++Q FLG
Sbjct: 239 SMYSRMAEKIALKYMQKLCSHIESDSVKNANADNSMLEMVRCGSKGSIKKFSEQFAFLGL 298
Query: 710 QLFVRGRLYSKGLLEDVASHFKLKCD--------YDGDGYPSAEYGLLKGCFFHGLDPFE 761
Q + KG + +L C YD DG+ E G++K F GL P E
Sbjct: 299 QPY-------KGKFMHPTKNMQLSCMHQDEQNVMYDQDGFLWGERGIVKSSFAEGLSPQE 351
Query: 762 ELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGLK 821
VH++S RE M+ + +SEPG L+KN++ RDV + YDGTVR+ IIQF+YG K
Sbjct: 352 FFVHTVSYRETMIHKALRVSEPGYLYKNMVLFARDVCMHYDGTVRSEHGKHIIQFDYGCK 411
Query: 822 AGDNASYLFPAGEHVGVLAATAMSNPAYKAVLDASPSSN----CSWELMKEILLCKVHFR 877
N P GE VG LAATA+S PAY+ +L++ N C EL++E + +
Sbjct: 412 E-SNMPGSTPPGEPVGFLAATAISQPAYQMLLESPNQLNDLAFCPLELLQETIYSRKASV 470
Query: 878 NEPIDRRVILYLNDCDCGRSYCRENAAYAVKNQLRKVSLKDTAVDFIVEY---QQQRKRK 934
++P D RV+LY+ + D + +E AA V L+ V+L+ V++ Q K
Sbjct: 471 SKPNDLRVVLYIKEVD---GFSKEAAAMEVSQSLQHVTLEMLLCSLSVKFVGNMQAGFWK 527
Query: 935 G--SEIDAGLVGHIHLDEVKLEELKINMAEVFQRCQEKLDSFNRKRKFNQIFKRTELFFS 992
G + + H+ LD+ L + AE + KL + N F +
Sbjct: 528 GLLPTKKSPWIVHMLLDQTALSAYNLE-AEAIAK---KLLNTNSVHSFGALHFVARGSCD 583
Query: 993 ESC-----VSPNFSAPCLTFIWPAGDGNDLHETTKILADTICPALLDTIIQGDPRINSAN 1047
SC +S N PCL+F + E + D I P ++ ++GD RI S +
Sbjct: 584 LSCPGCTRLSEN---PCLSFCLSTAQSPSIEEALSQIRDIIVPHIMKVSVRGDRRIKSVS 640
Query: 1048 IIWVNPDTNTWVRNPSKS-------SNGELALDIILEKE--SIKQNGDAWRIVLDSCLPV 1098
I+ P P S S+ E+AL++ + + S +Q +AW +VLD C V
Sbjct: 641 IL---PSGILSEAVPFGSQEHYRERSSTEIALEVTIHGKLKSTRQKTNAWNVVLDLCGSV 697
Query: 1099 LHLIDTRRSIPYAIKQIQELLGISCTFDQAIQRLAASVKMVAKGVLREHLILLASSMTCG 1158
LH I+ RS+P I+ I + GI + RL + + M K V H+I++ MT
Sbjct: 698 LHKINWLRSMPSGIQAIANVFGIEAAHNCIYHRLKSILSMFDKTVYDHHVIVITELMTHS 757
Query: 1159 GNLVGFNTGGYKALARQLNIQVPFTDATLFTPKRCFERAAEKCHTDSLSSIVASCSWGKP 1218
GN++G N G++ ++ L+I P T + + + + AA + D LS +A+ WGK
Sbjct: 758 GNVIGLNAAGFREISNSLHISAPITQSLFQSSIKHIQTAALRGKCDDLSGTLAAICWGKL 817
Query: 1219 VAVGTGSKFDVLWDAKEI 1236
VGTG+KFD+LW E+
Sbjct: 818 APVGTGAKFDILWRKVEL 835
>D7KU36_ARALL (tr|D7KU36) DNA-directed RNA polymerase OS=Arabidopsis lyrata subsp.
lyrata GN=ARALYDRAFT_893170 PE=3 SV=1
Length = 1456
Score = 328 bits (840), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 318/1289 (24%), Positives = 536/1289 (41%), Gaps = 167/1289 (12%)
Query: 48 LGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNC--LKMK 105
LGLP C++CG+ + CEGHFG I I +P + E+ +L+ +C C ++ K
Sbjct: 47 LGLPNPDSICKTCGSKDRKVCEGHFGVINFQYSIINPYFLKEIAALLNKICPGCKYIRKK 106
Query: 106 KTKFPSSSSGLAQRLLSPCCQEPNAAQVSIREVKTGDGACYLVLKVSKSKMQD------- 158
+ + + S +V+ +EV G V + S K++
Sbjct: 107 QFQITEDQPERCRYCTSNTGYPLMKFRVTTKEVFRRSGIVVEVNEESLMKLKKRGVLALP 166
Query: 159 -GFWRFLDKYGYRYE--VDHTRALLP-CEVMEMIKRFPLETKKKLAGKGYFPQDGYVIKY 214
+W F+ + E + TR +L +V ++ ++L K D +
Sbjct: 167 PDYWSFVPQDSNIDESCLKPTRRILTHAQVYALLSGI----DQRLIKKDIPMFDSLALTS 222
Query: 215 LPVPPNC--LXXXXXXXXXXXXXXXXXXTFLRKLL-----------RKVEVIRSSRSGEP 261
PV PN + RKL+ R +E ++ SR
Sbjct: 223 FPVTPNGYRVTEIVHQFNGARLVFDERTRIYRKLVGFEGNTLELSSRVIECMQYSRLFSE 282
Query: 262 NFESHQVEANDLQSVVDQYLQIRGCAKPARDIETHFGVNKELSDASNKAWLDKMKSLFIS 321
N S Q AN Q + SD L MK + +
Sbjct: 283 NVSSSQDSANPYQ---------------------------KKSDTPKLCGLRFMKDVLLG 315
Query: 322 KGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLVDENLC----L 377
K S + R+V+ GD +++E+GIP IA+R+ E +N+ N L NL +
Sbjct: 316 KRSDHTFRTVVVGDPSLKLHEIGIPERIAKRLQVSEHLNNWNNERLVTFCSPNLFDNKEV 375
Query: 378 AYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALVVYI-HD 436
+ G ++R L+ G + R +MDGD V +NRPP+ H+HSL A+ V +
Sbjct: 376 HVRRGDRLVAIRVSD-----LQTGDKIFRNLMDGDTVLMNRPPSIHQHSLIAMTVRVLPT 430
Query: 437 DHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSH--XXXXXXX 494
V +NP+ C P DFDGDC+H + PQS+ AK E+ EL +++KQL++
Sbjct: 431 TSVVSLNPICCLPFRGDFDGDCLHGYVPQSIQAKVELDELVALDKQLINRQNGRNLLSLG 490
Query: 495 XXXXXXXXXXXXVKKGFMDRAAANQMAMFLSLPLPQPALLKAG--SGDCYWTSTQILQCA 552
K +++RA Q+ M+ LP PA++KA S + WT Q+
Sbjct: 491 QDSLTAAYLVNVEKNCYLNRAQMQQLQMYCPFQLPPPAIIKASPSSTEPQWTGMQLFGML 550
Query: 553 LPLSFDCTG--GRYLIRESDILGFDLGRDVLPAVINEIAASVFFGKGPQEALNFFDVL-- 608
P FD T ++ ++L F G A + + + G + D++
Sbjct: 551 FPPGFDYTYPLNDVVVSNGELLSFSEGS----AWLRDGEGNFIQGLIKHDKRKVLDIIYS 606
Query: 609 -QPFLMECIFSNGFSVGLHDFSISG---AVKRITDR------------------------ 640
Q L + + G SV L D +S + K +T+
Sbjct: 607 AQEMLSQWLLMRGLSVSLADLYLSSDPQSRKNLTEEISYGLREAEQVCNKQQLMVESWRD 666
Query: 641 -------NIGKVSPLLYQLRFIYNELVAQQLEK--------HMQDIELPAIKFASKSSRL 685
+ G+ S RF Y + L K +D++ A ++ +S+
Sbjct: 667 FLAVNGEDEGEDSVARDLARFCYERQKSATLSKIAVSAFKDAYRDVQALAYRYGEQSNSF 726
Query: 686 GDMIDSKSKSALDKVTQQIGFLGQQ------LFVRGRLYSKGLLEDVASHFKLKCDYDGD 739
M + SK + K+ Q +G Q + R + D S + D
Sbjct: 727 LIMSKAGSKGNIGKLVQHSMCIGLQNSAVSLSYGFPRELTCASWNDPNSPLRGAKGEDST 786
Query: 740 GYPS-AEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVV 798
S YG+++ F GL+P E VHS+++R+ + L PGTL + LM +RD+
Sbjct: 787 ATESYVPYGVIENSFLTGLNPLESFVHSVTSRDSSFSGNADL--PGTLSRRLMFFMRDIY 844
Query: 799 VCYDGTVRNVCSNSIIQFEYGLKAGDNASYLFPAGEHVGVLAATAMSNPAYKAV------ 852
YDGTVRN N ++QF Y + GE +G L+A A+S AY A+
Sbjct: 845 AAYDGTVRNSFGNQLVQFTYE----TDGPVEDITGEALGSLSACALSEAAYSALDQPISL 900
Query: 853 LDASPSSNCSWELMKEILLCKVHFRNEPIDRRVILYLNDCDCGRSYCRENAAYAVKNQLR 912
L+ SP N +K +L C + ++ + LYL++ + + E + +KN L
Sbjct: 901 LETSPLLN-----LKNVLECGS--KKGQREQTMTLYLSETLSKKKHGFEYGSLEIKNHLE 953
Query: 913 KVSLKDTAVDFIVEYQQQRKRKGSEIDAGLVGHIHLDEVKLEELKINMAEVFQRCQEKLD 972
K+S + ++ + K + V H H+ E L+ ++N+ V E+
Sbjct: 954 KLSFSEIVSTSMIIFSPSTNTKVPL--SPWVCHFHISEKVLKRKQLNVESVVSSLNEQYK 1011
Query: 973 SFNRKRKFNQIFKRTELFFSESCVSPNFSAP----CLTFIWPAGDGNDLHETTKILADTI 1028
S NR+ K + + ++ + C S + + C+T + + E I +
Sbjct: 1012 SRNRELKLDIV--DLDIQSTNHCSSDDKAMKDDSFCITVTVIEASKHSVLELDAIRL-VL 1068
Query: 1029 CPALLDTIIQGDPRINSANIIWVNPDTNTWVRNPSKSSN---GELALDIILEKESIKQNG 1085
P LLD+ ++G I +I+W + + P ++ + GEL L + + + K+N
Sbjct: 1069 IPFLLDSPVKGSQEIKKVDILWTDRP-----KAPKRNGDHLAGELYLRVTMYGDRGKRN- 1122
Query: 1086 DAWRIVLDSCLPVLHLIDTRRSIPYAIKQIQELLGISCTFDQAIQRLAASVKMVAKGVLR 1145
W +L++CLP++ +ID RS P I+Q + GI + L ++V K +L+
Sbjct: 1123 -CWTALLETCLPIMDMIDWSRSHPDNIRQCCSVYGIDAGRSIFVANLESAVSDTGKTILK 1181
Query: 1146 EHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDATLFTPKRCFERAAEKCHTDS 1205
EHL+L+A S++ G V N G+ + + PFT A +P +CF +AA++ D
Sbjct: 1182 EHLLLVADSLSVTGEFVALNAKGWSKQRQVESTPAPFTQACFSSPSQCFLKAAKEGVRDD 1241
Query: 1206 LSSIVASCSWGKPVAVGTGSKFDVLWDAK 1234
L + + +WGK GTG +F+++ K
Sbjct: 1242 LQGSIDALAWGKVPGFGTGDQFEIIISPK 1270
>F6HUI3_VITVI (tr|F6HUI3) DNA-directed RNA polymerase OS=Vitis vinifera
GN=VIT_02s0025g04530 PE=3 SV=1
Length = 1433
Score = 327 bits (839), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 340/1315 (25%), Positives = 561/1315 (42%), Gaps = 179/1315 (13%)
Query: 12 GNVVGIQFGMATRQEICTXXXXXXXXXXXXXXXNPFLGLPLEYGRCESCGTSEAGKCEGH 71
G ++GI+F ++T +++ +P LG+P +C +CG + KCEGH
Sbjct: 14 GLLIGIKFDVSTEEDM--EKISVMKIDAVNEITDPKLGVPNPSCQCSTCGAKDTKKCEGH 71
Query: 72 FGYIELPVPIYHPSHVSELKKMLSLVCLNCLKMKKTKFPSSSSGLAQRLLSPCCQEPNAA 131
FG I+ P I HP ++E+ ++L+ +C C ++ ++ +RL S C+ A
Sbjct: 72 FGVIKFPFTILHPYFLTEVVQILNKICPGCKSTRQGQWVK-----VRRLRSKGCKYCAA- 125
Query: 132 QVSIREVKTGDGACYLVLKVSKSKMQDGFWRFLDKYGYRYEVDHTRALLPCEVMEMIKRF 191
+ D + KVS +D F + ++EM ++
Sbjct: 126 -------NSNDWYPTMKFKVSS---KDLFRK------------------TAIIVEMNEKL 157
Query: 192 PLETKKKLAGKGYFPQDGYVIKYLPVPP----NCLXXXXXXXXXXXXXXXXXXT---FLR 244
P + +KK + + P D + ++P P NCL F++
Sbjct: 158 PKKLQKK-SFRPVLPLDYW--DFIPKDPQQEENCLNPNRRVLSHAQVHYLLKDIDPGFIK 214
Query: 245 KLLRKVE-VIRSSRSGEPNFESHQVE------ANDLQSVVDQYLQIRGCAKPARDIETHF 297
+ + +++ + PN +H+V +N + DQ+ ++ + +
Sbjct: 215 EFVSRMDSFFLNCLPVTPN--NHRVTEITHALSNGQTLIFDQH------SRAYKKLVDFR 266
Query: 298 GVNKELS--DASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITF 355
G ELS AS + L +K + + K + S R ++ GD R++E+GIP IA+ +
Sbjct: 267 GTANELSCHSASKMSGLKWIKEVLLGKRTNHSFRMIVVGDPKLRLSEIGIPCHIAEELLI 326
Query: 356 EERVNSHNMCYLQKLVDENLCLAYKEGVSTYSLREGS----KGHTYLKPGQIVHRRIMDG 411
E +NS N + V L E TY R+G+ + + G I++R + DG
Sbjct: 327 SEHLNSWNW----EKVTNGCNLRLLEKGQTYVRRKGTLAPVRRMNDFQAGDIIYRPLTDG 382
Query: 412 DIVFINRPPTTHKHSLQALVVYIHD-DHTVKINPLICGPLGADFDGDCVHLFYPQSLAAK 470
DIV INRPP+ H+HS+ AL V + + V INPL C P DFDGDC+H + PQS+ ++
Sbjct: 383 DIVLINRPPSIHQHSVIALSVKVLPLNSVVSINPLCCSPFRGDFDGDCLHGYIPQSVDSR 442
Query: 471 AEVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKKG-FMDRAAANQMAMFLSLPLP 529
E+ EL ++ +QL++ ++ G ++ Q+ MF L
Sbjct: 443 VELSELVALNRQLINRQSGRNLLSLSQDSLSAAHLVMEDGVLLNLFQMQQLEMFCPYQLQ 502
Query: 530 QPALLKAGSGDC-YWTSTQILQCALPLSFDCTGGRYLIRESDILGFDLGRDVLPAVINEI 588
PA++KA D WT Q+ LP F+ +R SD G + A + +I
Sbjct: 503 SPAIIKAPLLDTQVWTGKQLFSMLLPPGFNYVFPLNGVRISD--GELISSSDGSAWLRDI 560
Query: 589 AASVF--FGKGPQ-EALNFFDVLQPFLMECIFSNGFSVGLHDFSI---SGAVKRITDR-- 640
++F K Q +AL+F Q L E + G SV L D + S + K + D
Sbjct: 561 DGNLFSSLVKDCQGKALDFLYAAQEVLCEWLSMRGLSVSLSDIYLSSDSISRKNMIDEVF 620
Query: 641 ------------------------------NIGKVSPLLYQLRFIYNELVAQ------QL 664
N V P + L + A
Sbjct: 621 CGLLVAEQTCHFKQLLVDSSQNFLIGSGENNQNGVVPDVQSLWYERQGSAALCQSSVCAF 680
Query: 665 EKHMQDIELPAIKFASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLE 724
++ +DI+ ++A+K + L M+ + SK L K+ QQ LG Q + +
Sbjct: 681 KQKFRDIQNLVYQYANKDNSLLAMLKAGSKGNLLKLVQQGLCLGLQHSLVPLSFKIPHQL 740
Query: 725 DVASHFKLKCD--YDGDGYPSAE----YGLLKGCFFHGLDPFEELVHSISTREIMVRSSR 778
A+ K K D AE Y +++ F GL+P E VHS+++R+ +
Sbjct: 741 SCAAWNKQKVPGLIQNDTSEYAESYIPYAVVENSFLMGLNPLECFVHSVTSRDSSFSDNA 800
Query: 779 GLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGLKAG---------DNASYL 829
L PGTL + LM +RD+ + YDGTVRN N ++QF Y ++ D +Y
Sbjct: 801 DL--PGTLTRRLMFFMRDLYIAYDGTVRNAYGNQLVQFSYNIEHTSTPSDGINEDTCAYD 858
Query: 830 FPAGEHVGVLAATAMSNPAYKAV------LDASPSSNCSWELMKEILLCKVHFRNEPIDR 883
G+ VG ++A A+S AY A+ L+ SP N +K +L C + R DR
Sbjct: 859 M-GGQPVGSISACAISEAAYSALDQPISLLEPSPLLN-----LKRVLECGL--RKSTADR 910
Query: 884 RVILYLNDCDCGRSYCRENAAYAVKNQLRKVSLKDTAVDFIVEYQQQRKRKGSEIDAGLV 943
V L+L+ R + E A VKN L K+ D ++ + Q K + V
Sbjct: 911 TVSLFLSKKLEKRKHGFEYGALEVKNHLEKLLFSDIVSTVMIVFSPQNGSKTHF--SPWV 968
Query: 944 GHIHLDEVKLEELKINMAEVFQRCQEKLDSFNRKRKFN----QIFKRTELFFSESCVSPN 999
H H+ E ++ + + K +S + K N QI + E S
Sbjct: 969 CHFHVCEEIAKKRSLKPHSIIDALYMKCNSARAESKINLPDLQITSKDCFVDMEKEDSDC 1028
Query: 1000 FSAPCLTFIWPAGDGNDLHETTKILADTICPALLDTIIQGDPRINSANIIWVNPDTNTWV 1059
F C+T + + T + D + P LL +++G NS +
Sbjct: 1029 F---CITVSIVNSKKSCIQLDT--VRDLVIPFLLGAVVKGCCIKNSDVL----------- 1072
Query: 1060 RNPSKSSNGELALDIILEKESIKQNGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQIQELL 1119
KSS+G L L + + + K+N W +++D+CL ++ +ID RS P I I +
Sbjct: 1073 ----KSSSGRLYLRVYVSGDCGKKN--FWGVLMDACLQIMDMIDWERSHPDNIHDIFVVY 1126
Query: 1120 GISCTFDQAIQRLAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQ 1179
GI + + L +++ + K VL EHL+L+AS ++ G VG N G +I
Sbjct: 1127 GIDAGWKYFLNSLKSAISDIGKTVLPEHLLLVASCLSATGEFVGLNAKGMARQKELTSIS 1186
Query: 1180 VPFTDATLFTPKRCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSKFDVLWDAK 1234
PF +P CF +A ++ D+L + + +WGK +VG+G FD+L+ AK
Sbjct: 1187 SPFMQGCFSSPGSCFIKAGKRAVADNLHGSLDALAWGKIPSVGSGGHFDILYSAK 1241
>A5BGS4_VITVI (tr|A5BGS4) Putative uncharacterized protein OS=Vitis vinifera
GN=VITISV_024603 PE=4 SV=1
Length = 1081
Score = 327 bits (837), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 221/580 (38%), Positives = 299/580 (51%), Gaps = 90/580 (15%)
Query: 1040 DPRINSANIIWVNPDTNTWVRNPSKSSNGELALDIILEKESIKQNGDAWRIVLDSCLPVL 1099
D R+ + NIIW++PDT TW+RNP KS GELALDI+LEK ++KQ GDAWRIVLD+CLPVL
Sbjct: 267 DSRVCTVNIIWISPDTTTWIRNPCKSRKGELALDIVLEKAAVKQRGDAWRIVLDACLPVL 326
Query: 1100 HLIDTRRSIPYAIKQIQELLGISCTFDQAIQRLAASVKMVAKGVLREHLILLASSMTCGG 1159
HLIDTRRSIPYAIKQ+QELLGISC FDQA+QRL+ SV MVAKGVL+EHLILLA+SMTC G
Sbjct: 327 HLIDTRRSIPYAIKQVQELLGISCAFDQAVQRLSKSVTMVAKGVLKEHLILLANSMTCAG 386
Query: 1160 NLVGFNTGGYKALARQLNIQVPFTDATLFTPKRCFERAAEKCHTDSLSSIVASCSWGKPV 1219
NL+GFN+GGYKAL+R LN+QVPFT+ATLF
Sbjct: 387 NLIGFNSGGYKALSRALNLQVPFTEATLF------------------------------- 415
Query: 1220 AVGTGSKFDVLWDAKEIKSNDLDGMDVYNFLHMVKSLTNGEEENNACXXXXXXXX-XXXX 1278
+ TGS+FDVLWD KEI G+D+Y+FLH+V+S + G+E + AC
Sbjct: 416 -LVTGSRFDVLWDTKEIGPAQDGGIDIYSFLHLVRSGSYGKEPDTACLGAEVEDLILEDE 474
Query: 1279 NADYSLSPQHTSGVD-AVFEETFEAMNG-----PESNG-WGSNTDRTETNST----QWSA 1327
N + +SP+H+S + VFE++ E N P+S G W N ++ T ST WS+
Sbjct: 475 NLELGMSPEHSSNFEKPVFEDSAEFQNTWENHVPDSGGDWAVNQNKETTASTLKPSAWSS 534
Query: 1328 WESNKAETKDGGSQRVHEDS-----WTSRDVMKDDSQMTNAWDGNVEQT-KTISNDWT-- 1379
W ++K KD S R E+S W + D A+ E + ++ D T
Sbjct: 535 WGTDKVTMKDTFSTREPEESSRSAGWDDKGTWGTDKAQNTAFRRTHEDSPRSSGRDETFR 594
Query: 1380 ---------AWGKNKSEIQDNVAEKAEG-----ECGSSEKWKTAVIQEGSSKSNAWKSNI 1425
AWGK E K +G + S W V QE +++S I
Sbjct: 595 DGRPQFASSAWGKKIDEADKTGWNKNDGKPQMDKLRESCDWDCKVAQEKTTQSTY--GGI 652
Query: 1426 EQRSDEDSWTSQKLKADVIQDSSKPSSWGAKPKSNDSSNWGRNKDEIQDVVSRRAEDDSW 1485
S W +L+ +V+Q P + +W N E D +++ W
Sbjct: 653 S--STTGDWKKNELQMEVVQHDESPV---------NEHSWDANLPE--DPLAQATTSVGW 699
Query: 1486 SS-------KKQLSSDATQEDSSKFSFWGGNKDTTKPKSNDWSSWGGNRDGIQDGGSKRA 1538
S K++L S + Q+ W + + K +SN +S G G +
Sbjct: 700 DSSTGKDWTKRKLQSPSEQQRDPAIKSWSSSHNVMKEQSNQPASTHGWDSPGAKGWNDVE 759
Query: 1539 QDDSWSSQKD-VTRESSSKVDAWGANNEASN-PKSNDWSA 1576
+ W+ + V + S WG +NE + P S W +
Sbjct: 760 EQSQWNQRGSAVKNDQSESSHGWGPSNEQNQLPSSQGWGS 799
>J3M0K5_ORYBR (tr|J3M0K5) DNA-directed RNA polymerase OS=Oryza brachyantha
GN=OB04G29300 PE=3 SV=1
Length = 1474
Score = 325 bits (834), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 327/1322 (24%), Positives = 560/1322 (42%), Gaps = 183/1322 (13%)
Query: 45 NPFLGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKM 104
N LGLP +C +CG+ C+GHFG I+L +++P + E+ +L+ +C CL +
Sbjct: 52 NAKLGLPNGAPQCATCGSQSVRDCDGHFGVIKLAATVHNPYFIEEVVHLLNQICPGCLTL 111
Query: 105 KKTKFPSSSSGLAQRLLSPCCQEPNA-------------AQVSIREVKTGDGACYL---- 147
K+ + G+ + C + A +V++ K +
Sbjct: 112 KQNGDMKRADGITIQATCKYCSKDGAKLYPSIIFKMLTSPRVTLSRSKLHRNTSVIDKMS 171
Query: 148 --------VLKVSKSK----MQDGFWRFLDKYGYRYEVDHTRALL-PCEVMEMIKRFPLE 194
V SK+K + FW F+ + + T+ +L P +V M+K+ E
Sbjct: 172 IIAEVASRVTHNSKNKAPETLPHDFWDFIPDENQPSQSNVTKKILSPYQVFHMLKKLDPE 231
Query: 195 TKKKLAGKGYFPQDGYVIKYLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEVIR 254
+ + ++ + LPV PNC + R V+V R
Sbjct: 232 LISHVTPR----RELLFLSCLPVTPNCHRVAEMPYGHSDGPRLAFDDRTKAYKRMVDVSR 287
Query: 255 SSRSGEPNFESHQVEANDLQSVVDQYLQIRGCAKPAR-DIETHFGVNKELSDASNKAWLD 313
++ H SVV ++ C K ++ + G + +D WL
Sbjct: 288 RID----DYRQHPQFGVFASSVVTS--RVMECMKSSKLYAKKSDGESSTSTDTYGTKWL- 340
Query: 314 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNM------CYL 367
K + +SK S + RS++ GD +NE+GIP ++A + E+V+ +N C L
Sbjct: 341 --KDIILSKRSDNAFRSIMVGDPKISLNEIGIPMDLALNLVVSEQVSYYNFETINLKCNL 398
Query: 368 QKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSL 427
L E L L + G + +R+ +K L+ G I +R + DGD+V +NRPP+ H+HSL
Sbjct: 399 HLLTKEVL-LVRRNGKLIF-VRKANK----LQIGDIAYRLLQDGDLVLVNRPPSVHQHSL 452
Query: 428 QALVVYIHDDHT-VKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSS 486
AL + H+ V INPL C P DFDGDC+H + PQS+ ++ E+ EL + +QLL++
Sbjct: 453 VALSAKLLPVHSAVSINPLCCDPFKGDFDGDCLHGYVPQSIQSRVELEELVGLNRQLLNA 512
Query: 487 HXXXXXXXXXXXXXXXXXXXVKKG-FMDRAAANQMAMFLSL--PLPQPALLK-AGSGDCY 542
+ +A Q+ M S P P+++K A S
Sbjct: 513 QDGRSLVSLTHDSLAAAHQLTSADILLQKAEFQQLQMLCSSISSTPMPSVIKSANSQGPL 572
Query: 543 WTSTQILQCALPLSFDCTGGRYL-IRESDILGFDLGRDVLPAVINEIAASVFFGKGPQEA 601
WT Q+ LP + + + L I++S++L G L + + SV F + ++A
Sbjct: 573 WTGKQLFGLLLPSGMNISFDQNLHIKDSEVLTCSSGSLWLQNNTSSLF-SVMFKEYGRKA 631
Query: 602 LNFFDVLQPFLMECIFSNGFSVGLHD---FSISGAVKRITDR------------------ 640
L F Q L E + G SV L D FS + +++++
Sbjct: 632 LQFLSSTQDVLCEFLTIRGLSVSLSDLYLFSDHYSRRKLSEEVHLALDEAEEAFQIKQIL 691
Query: 641 -------------------------NIGKVSPLLYQ-----LRFIYNELVAQQLEKHMQD 670
+ + SP + + + I+N+L+ + ++ H+
Sbjct: 692 LNPVSIPNLKYYDGADDLSNSYGQSDFTQASPSIIKSSITSFKSIFNDLL-KMVQHHV-- 748
Query: 671 IELPAIKFASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYS-KGLLEDVASH 729
SK + + MI+S SK ++ K QQ +G QL + +L V+ +
Sbjct: 749 ---------SKDNSMMAMINSGSKGSIPKFVQQTACVGLQLPASKFPFKIPSILSCVSWN 799
Query: 730 FKLKCDYDGDGYP------SAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEP 783
DY+ Y + Y +++ F GL+P E L+H+IS R S P
Sbjct: 800 RHKSLDYEITDYTIESMGGQSMYAVIRNSFLDGLNPLECLLHAISGRANFF--SENADVP 857
Query: 784 GTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGLKAGDNASYLFPA--GEHVGVLAA 841
GTL + LM LRD + YDGTVR+ I+QF Y G + G VG AA
Sbjct: 858 GTLTRKLMYHLRDTYIAYDGTVRSSYGQQIVQFSYDTSDGMYIEHDIEGEPGTPVGSWAA 917
Query: 842 TAMSNPAYKAV------LDASPSSNCSWELMKEILLCKVHFRNEPIDRRVILYLNDCDCG 895
++S AY A+ L+ SP N ++E+L C H +D +L+L+
Sbjct: 918 CSISEAAYGALDHPVNGLEDSPLMN-----LQEVLKC--HKGTNSVDHTGLLFLSKHLRK 970
Query: 896 RSYCRENAAYAVKNQLRKVSLKDTAVDFIVEY--QQQRKRKGSEIDAGLVGHIHLDEVKL 953
Y E A+ VK+ L +V D ++ Y +K KG+ V H HL++
Sbjct: 971 YRYGFEYASLEVKDHLERVDFSDLVDTVMILYGGSDIQKSKGNP----WVTHFHLNQ--- 1023
Query: 954 EELKINMAEVFQRCQEKLDSFNRKRK-FNQIFKRTELFFSESCVSPNF---SAPCLTFIW 1009
E +KI + +E +D +N RK N + S+ V A C+T +
Sbjct: 1024 EAMKIKRLGLGYVVRELIDQYNALRKQLNNTIPSVCILSSKCSVGNGCVKNQACCVTMVV 1083
Query: 1010 PAGDGNDLHETTKILADTICPALLDTIIQGDPRINSANIIWVNPDTNTWVRNPSKSSNGE 1069
+ N + T I+ + + P++L T+++G + + + E
Sbjct: 1084 QV-ESNSTSQLT-IIKERVIPSILATLLKGFLEFKNVKV--------------QCQQDSE 1127
Query: 1070 LALDIILEKESIKQNGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQIQELLGISCTFDQAI 1129
L + + + + ++G W + ++C+P++ LID RS P + + GI + +
Sbjct: 1128 LVVRVDMSEHC--KSGKFWATLQNACIPIMELIDWERSRPERLYDVFCSYGIDSAWKFFV 1185
Query: 1130 QRLAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDATLFT 1189
+ L ++ + + + R+HL+++A ++ G G ++ G K L+I PF++A
Sbjct: 1186 ESLRSTTDAIGRNIRRQHLLVVADCLSVSGQFHGLSSQGLKQQRTSLSISSPFSEACFSR 1245
Query: 1190 PKRCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSKFDVLWDAKEIKSNDLDGMDVYNF 1249
P F AA+K D LS + + +WGK GT F +L+ K ++ + ++YNF
Sbjct: 1246 PAHSFINAAKKDSVDKLSGTLDAIAWGKEPCTGTSGPFKILYSGKSHETKQKE--NIYNF 1303
Query: 1250 LH 1251
LH
Sbjct: 1304 LH 1305
>B9RC12_RICCO (tr|B9RC12) DNA-directed RNA polymerase OS=Ricinus communis
GN=RCOM_1683300 PE=3 SV=1
Length = 1475
Score = 325 bits (832), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 336/1300 (25%), Positives = 559/1300 (43%), Gaps = 192/1300 (14%)
Query: 48 LGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKMKKT 107
LGLP +C +CG+ + CEGHFG I+ P I HP ++SE+ ++L+ VC C ++K
Sbjct: 49 LGLPNPTNQCSTCGSKDLKSCEGHFGVIKFPFTILHPYYLSEVVRILNQVCPKCKSIRKE 108
Query: 108 KFPSSSSGLAQRL---LSPCCQEPNAA-QVSIREVKTGDGACYLVLKVS----------- 152
+ L +L L C P VS E+ + ++ K S
Sbjct: 109 SKVRCLNHLNPKLPVLLILLCWYPAMKFSVSSEEIFRKN---VIIAKFSERPTNKSQKRG 165
Query: 153 -KSKMQDGFWRFLDKYGYRYE---VDHTRALLPCEVMEMIKRFPLETKKKLAGKGYFPQD 208
K K+ +W + K + E + R L +V+ +++ +K K +D
Sbjct: 166 FKKKLAADYWDIIPKDEQQEENITRPNQRVLSHAQVIHLLENIDPNFIRKFVLK----RD 221
Query: 209 GYVIKYLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEVIRSSRSGEPNFESHQV 268
+ V PNC R EV + +G+ ++
Sbjct: 222 SIFLNCFSVTPNCH-------------------------RVTEVTHAFSNGQ------RL 250
Query: 269 EANDLQSVVDQYLQIRGCAK----------------PARDI--ETHFGVNKELSDASNKA 310
+D + + RG AK P + + + + + ++++D+S+ +
Sbjct: 251 VFDDRTRAYKKMVDFRGIAKELSFRVLDCLKTSKINPDKSVNNDDYMALQRKMNDSSSSS 310
Query: 311 W-LDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNS-----HNM 364
L +K + + K + S R V+ GD + +E+GIP IA+R+ E + + N
Sbjct: 311 SGLRWIKDVVLGKRNDNSFRMVVVGDPNIKFSEIGIPCPIAERLQISEHLTTWNWDKLNT 370
Query: 365 CYLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHK 424
C +L+++ +EG R L+ G I++R + DGD V INRPP+ H+
Sbjct: 371 CCEVRLLEKGDMHVRREGKLVRVRRTKE-----LRIGDIIYRPLNDGDTVLINRPPSIHQ 425
Query: 425 HSLQALVVYIHDDHTV-KINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQL 483
HSL AL V + +V INPLIC P DFDGDC+H + PQS+ + E+ EL +++KQL
Sbjct: 426 HSLIALSVKVLPATSVLAINPLICAPFRGDFDGDCLHGYVPQSVDTRVELRELVALDKQL 485
Query: 484 LSSHXXXXXXXXXXXXXXXXXXXVKKGFMDRAAANQMAM-FLSLPLPQPALLKAGSGD-C 541
++ ++ G + Q F L PA+ KA S + C
Sbjct: 486 INVQNGRNLLSFSQDSLVAAHLVMEDGVLLSLQQMQQLQMFCPHQLFSPAVRKAPSLNGC 545
Query: 542 YWTSTQILQCALPLSFD--CTGGRYLIRESDILGFDLGRDVLPAVINEIAASVFFGKGPQ 599
WT Q++ LP FD C IR+ +++ + G L + S+ +
Sbjct: 546 AWTGKQLISMLLPRGFDHECPSSDVYIRDGELISSE-GSFWLRDTDGNLFQSLI-KQCQD 603
Query: 600 EALNFFDVLQPFLMECIFSNGFSV-----------------------GLHDFSISGAVKR 636
+ L+F + Q L E + G SV GL D + +K+
Sbjct: 604 QVLDFLYIAQEVLCEWLSMRGLSVSLSDLYLCPDSDSRENMMDEVLFGLQDAKGTCNMKQ 663
Query: 637 ITDRNIGKVSPLL-----YQLRFIYNELVAQQLE------------KHM-QDIELPAIKF 678
+ + Y + F L ++ KH+ +DI+ K+
Sbjct: 664 FMVDSCRDFLASIDEDEQYSVNFDVEHLCHEKQRSAALSQASVDAFKHVFRDIQTLGYKY 723
Query: 679 ASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDG 738
ASK + L M S SK L KV Q LG Q + + L + K K +
Sbjct: 724 ASKDNALMAMFKSGSKGNLLKVVQHSMCLGLQHSLVPLSFRMPLQLSCDAWNKQKAENAV 783
Query: 739 DG----YPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAIL 794
+ PSA +++GCF GL+P E VHS+++RE + L PGTL + LM +
Sbjct: 784 ECARSYIPSA---VVEGCFLTGLNPLECFVHSVTSRESSFSDNADL--PGTLTRRLMFFM 838
Query: 795 RDVVVCYDGTVRNVCSNSIIQFEYGLKAGDNA----------SYLFPAGEHVGVLAATAM 844
RDV YDG+VR+ N +IQF Y + G +A +Y AG+ VG LAA ++
Sbjct: 839 RDVHAAYDGSVRSAYGNQLIQFSYNIDEGRSAETYGTAKIVDNYDGMAGKPVGSLAACSI 898
Query: 845 SNPAYKAV------LDASPSSNCSWELMKEILLCKVHFRNEPIDRRVILYLNDCDCGRSY 898
S AY A+ L+ SP N +K +L C + N + + L+L++ R +
Sbjct: 899 SEAAYSALDQPISLLEKSPLLN-----LKNVLECGLKKSNA--HKSMSLFLSEKLGRRRH 951
Query: 899 CRENAAYAVKNQLRKVSLKDTAVDFIVEYQQQRKRKGSEIDAGLVGHIHLDEVKLEELKI 958
E A V++ L ++ D + + Q + K + V H H+ + +++ +
Sbjct: 952 GFEYGALKVQDHLERLLFSDIVSVSRIIFSSQSESKTCF--SPWVCHFHVYKEIMKKRNL 1009
Query: 959 NMAEVFQRCQEKLDSFNRKRKFNQIFKRTELFFSESCVSPNF----SAPCLTFIWPAGDG 1014
N+ + ++ N + K N ++ ++ N C+T
Sbjct: 1010 NVDSI-------INILNGRCKSNTNLPNVQISCKSCSIADNHREKEETLCITVTIVERSK 1062
Query: 1015 NDLHETTKILADTICPALLDTIIQGDPRINSANIIWVNPDTNTWVRNPSKSSN---GELA 1071
N I D + P LL+T+++G IN +I+W + W R SK+ N GEL
Sbjct: 1063 NSSTRLATI-QDLMIPFLLETVLKGLMEINKVDILWKD-----WPR-ISKTHNQPYGELY 1115
Query: 1072 LDIILEKESIKQNGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQIQELLGISCTFDQAIQR 1131
L + + +S K W +++D CLP++ +ID S P ++ GI + +QR
Sbjct: 1116 LRVSMSADSEKTR--LWNLLMDYCLPIMDMIDWTCSRPDNVRDFSLAYGIDAGWKFFLQR 1173
Query: 1132 LAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDATLFTPK 1191
L +++ V K VL EH++L+A+ ++ G VG N G+K ++ PF A +P
Sbjct: 1174 LESAISDVGKSVLPEHMLLVANCLSVTGEFVGLNAKGWKRQREDASVSSPFVQACFSSPG 1233
Query: 1192 RCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSKFDVLW 1231
CF +AA+ D L + + +WGK +VGTG +FD+++
Sbjct: 1234 NCFIKAAKAGVKDDLQGSLDALAWGKVPSVGTG-QFDIVY 1272
>G7LG88_MEDTR (tr|G7LG88) DNA-directed RNA polymerase OS=Medicago truncatula
GN=MTR_8g066100 PE=3 SV=1
Length = 606
Score = 325 bits (832), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 168/245 (68%), Positives = 186/245 (75%), Gaps = 23/245 (9%)
Query: 313 DKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLVD 372
+KM++LFI KGSGFSSR+VITGDGYK+INEVGIP E+AQRITFEERV+ N+ YLQKLVD
Sbjct: 45 EKMRTLFIRKGSGFSSRTVITGDGYKKINEVGIPLEVAQRITFEERVSILNIHYLQKLVD 104
Query: 373 ENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALVV 432
ENLCL YKEG+STYSLREGSKGHTYLKPGQIVH + G I+F + + +
Sbjct: 105 ENLCLTYKEGMSTYSLREGSKGHTYLKPGQIVHGGLWTG-ILFSSTDCQLPTSTPCKRLW 163
Query: 433 YIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHXXXXX 492
YI VKINPLICGPLGADFDGDCVHLFYPQSLAAKAEV+ELFSVEKQLLSS+
Sbjct: 164 YISMTTRVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVLELFSVEKQLLSSY----- 218
Query: 493 XXXXXXXXXXXXXXVKKGFMDRAAANQMAMFLSLPLPQPALLKAGSGDCYWTSTQILQCA 552
+DRAAANQMAMFLSLPLP PALLKA +GD YWTS QILQCA
Sbjct: 219 -----------------SVLDRAAANQMAMFLSLPLPMPALLKASTGDSYWTSIQILQCA 261
Query: 553 LPLSF 557
LP SF
Sbjct: 262 LPFSF 266
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/77 (75%), Positives = 69/77 (89%), Gaps = 1/77 (1%)
Query: 265 SHQVEANDLQSVVDQYLQIRGCAKPARDIETHFGVNKELS-DASNKAWLDKMKSLFISKG 323
+H VEANDLQSVVDQYLQIRG +K ARDIETH+G NK+L+ D+S AWL+KM++LFI KG
Sbjct: 328 NHGVEANDLQSVVDQYLQIRGISKSARDIETHYGFNKDLNDDSSTNAWLEKMRTLFIRKG 387
Query: 324 SGFSSRSVITGDGYKRI 340
SGFSSR+VITGDGYK+I
Sbjct: 388 SGFSSRNVITGDGYKKI 404
>R0HUP7_9BRAS (tr|R0HUP7) Uncharacterized protein OS=Capsella rubella
GN=CARUB_v10019657mg PE=4 SV=1
Length = 1459
Score = 310 bits (794), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 326/1341 (24%), Positives = 541/1341 (40%), Gaps = 181/1341 (13%)
Query: 68 CEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNC--LKMKKTKFPSSSSGLAQRLLSPCC 125
C GHFG + I +P + E+ +L+ +C C +K K+ + + +
Sbjct: 70 CLGHFGVVNFQYAIINPYFLKEIAALLNKICPGCKYIKKKQFQINGEQPHRCRYCTTNTS 129
Query: 126 QEPNAAQVSIREVKTGDGACYLVLKVSKSKMQD--------GFWRFLDKYGYRYEV---D 174
P +V+ +EV G V + S K++ +W F+ K E +
Sbjct: 130 YPPVKFRVTTKEVFRRSGIVVEVNEESLIKLKKQGTKTLPLDYWSFVPKDSNIDESCLKE 189
Query: 175 HTRALLPCEVMEMIKRFPLETKKKLAGKGYFPQDGYVIKYLPVPPNC--LXXXXXXXXXX 232
R L +V ++ ++L K D + PV PN +
Sbjct: 190 TKRILTHAQVYALL----YGIDERLIKKDIPMFDSLSLASFPVTPNGYRVTEIVHQSNGA 245
Query: 233 XXXXXXXXTFLRKLL-----------RKVEVIRSSRSGEPNFESHQVEANDLQSVVDQYL 281
++L+ R VE ++ SR S Q AN Q
Sbjct: 246 RLVFDERTRIYKRLVGFEGNTLELSSRVVECMQYSRLFSETVSSSQDSANPYQK------ 299
Query: 282 QIRGCAKPARDIETHFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRIN 341
KP D L MK + + K S + R+++ GD +++
Sbjct: 300 ------KP---------------DTPKLCGLRFMKDVLLGKRSDHTFRAIVVGDPALKLH 338
Query: 342 EVGIPHEIAQRITFEERVNSHNMCYLQKLVDENLC------LAYKEGVSTYSLREGSKGH 395
E+GIP IA+RI E +N NM L V L + + G S ++R+
Sbjct: 339 EIGIPQTIAERIQVSEILNDWNMERLSAFVLHKLIALRKREVHVRRGDSLVAIRQIKD-- 396
Query: 396 TYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALVV-YIHDDHTVKINPLICGPLGADF 454
L+ G + R +MDGD V +NRPP+ H+HSL A+ V + V +NP+ C P DF
Sbjct: 397 --LQTGDKISRTLMDGDTVLMNRPPSIHQHSLIAMSVKLLPTTSVVSLNPICCNPFRGDF 454
Query: 455 DGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSH--XXXXXXXXXXXXXXXXXXXVKKGFM 512
DGDC+H + PQS+ AK E+ EL +++KQ ++ K ++
Sbjct: 455 DGDCLHGYIPQSVQAKVELDELVALDKQHINRQNGRNLLSLGQDSLTGAYLVNVEKNCYL 514
Query: 513 DRAAANQMAMFLSLPLPQPALLKAG--SGDCYWTSTQILQCALPLSFDCTG--------- 561
+RA Q+ M+ LP PA+++A S + WT Q+ P FD T
Sbjct: 515 NRAQIQQLQMYCPFQLPPPAIIQASPSSTEPQWTGMQLFGMLFPPGFDYTHPLNDVVVSN 574
Query: 562 --------GRYLIRESD------ILGFDLGRDVLPAV---------------INEIAASV 592
G +R+ + +L D G+ VL + ++ A +
Sbjct: 575 GELLASSEGSAWLRDGEGNFIQRLLKHDQGK-VLEIIHSAQEMLSQWLLMRGLSVSLADL 633
Query: 593 FFGKGPQEALNFFDVLQPFLME----CIFSNGFSVGLHDF-SISGAVKRITDRNIGKVSP 647
+ PQ N + + L+E C DF +++G K + + ++
Sbjct: 634 YLSSDPQSRENLTEEIAYGLLEAEQVCNKQQLMVESWRDFLAVNGEEKDEEEDSFSDLAR 693
Query: 648 LLY--QLRFIYNELVAQQLEKHMQDIELPAIKFASKSSRLGDMIDSKSKSALDKVTQQIG 705
Y Q + + + +DI+ A ++ +S+ M + SK + K+ Q
Sbjct: 694 FCYERQKSATLSRIAVSAFKDAYRDIQALAYRYGDQSNSFLIMSKAGSKGNIGKLVQHSM 753
Query: 706 FLGQQ------LFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPS-AEYGLLKGCFFHGLD 758
+G Q F R + D S + D S YG+++ F GL+
Sbjct: 754 CIGLQNSAVALSFGFPRKLTCAAWNDPNSPLRSAKGADKTATESYVPYGVIENSFLTGLN 813
Query: 759 PFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEY 818
P E VHS+++R+ + L PGTL + LM +RD+ YDGTVRN N ++QF Y
Sbjct: 814 PLESFVHSVTSRDSSFSGNADL--PGTLSRRLMFFMRDIYAAYDGTVRNSFGNQVVQFTY 871
Query: 819 GLKAGDNASYLFPAGEHVGVLAATAMSNPAYKAV------LDASPSSNCSWELMKEILLC 872
GE +G L+A A+S AY A+ L+ SP N +K IL C
Sbjct: 872 ETDGPVEEI----TGEALGSLSACALSEAAYSALDQPVSLLETSPLLN-----LKNILEC 922
Query: 873 KVHFRNEPIDRRVILYLNDCDCGRSYCRENAAYAVKNQLRKVSLKDTAVDFIVEYQQQRK 932
+ ++ + LYL++ + + E + +KN L K+S + ++ + +
Sbjct: 923 GS--KKGQREQTISLYLSETLSKKKHGFEYGSLEIKNYLEKLSFSEIVSTSMIIFSPRTN 980
Query: 933 RKGSEIDAGLVGHIHLDEVKLEELKINMAEVFQRCQEKLDSFNRKRKFNQIFKRTELFFS 992
K + V H H+ E L+ ++N V E S NR+ K + + ++ +
Sbjct: 981 SKAPL--SPWVCHFHISEKVLKRKQLNAESVVSSLNEHYSSRNRELKLDLV--DLDIQCT 1036
Query: 993 ESCVSPNFSAP----CLTF-IWPAGDGNDLHETTKILADTICPALLDTIIQGDPRINSAN 1047
C S + + C+T + A DL IL P LLD+ ++G I +
Sbjct: 1037 NHCPSDDKAMTDDSFCITVTVIEASKPLDLDAVRLIL----IPFLLDSPVKGYQEIKKVD 1092
Query: 1048 IIWVNPDTNTWVRNPSKSSN---GELALDIILEKESIKQNGDAWRIVLDSCLPVLHLIDT 1104
I+W + + P N GEL L + + + K+N W ++++CLP++ +ID
Sbjct: 1093 ILWTDRP-----KAPKMYGNHLAGELYLRVTMNGDRGKRN--CWSSLVETCLPIMDMIDW 1145
Query: 1105 RRSIPYAIKQIQELLGISCTFDQAIQRLAASVKMVAKGVLREHLILLASSMTCGGNLVGF 1164
RS P I+Q + GI + L ++V K +LREHL+L A S++ G V
Sbjct: 1146 SRSHPDNIRQCCSVYGIDAGRSIFVANLESAVSDTGKTILREHLLLAADSLSITGEFVAL 1205
Query: 1165 NTGGYKALARQLNIQVPFTDATLFTPKRCFERAAEKCHTDSLSSIVASCSWGKPVAVGTG 1224
N G+ + + PFT A +P +CF +AA++ D L + + +WGK GTG
Sbjct: 1206 NAKGWSKQRQVESTPAPFTQACFSSPSQCFLKAAKEGVVDQLQGSIDTLAWGKVPGFGTG 1265
Query: 1225 SKFDVLWDAKEIKSNDLDGMDVYNFLHMVKSLTNGEEENNACXXXXXXXXXXXXNADYSL 1284
+FD++ K +DVY L + T + ++
Sbjct: 1266 DQFDIIISPK--VHGFTTPVDVYELLSSIPPKTVTKRATSSAPKSD------------KF 1311
Query: 1285 SPQHTSGVDAVFEETFEAMNG 1305
Q +D F + F+A+NG
Sbjct: 1312 KVQPFDMLDTAFPKAFKALNG 1332
>M0TPQ4_MUSAM (tr|M0TPQ4) DNA-directed RNA polymerase OS=Musa acuminata subsp.
malaccensis PE=3 SV=1
Length = 1674
Score = 303 bits (777), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 271/1032 (26%), Positives = 456/1032 (44%), Gaps = 127/1032 (12%)
Query: 315 MKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKL-VDE 373
+K + +SK + R + GD ++ E+GIP +I++ + E+VNS+N L+KL +
Sbjct: 178 LKDVVLSKRTDNVFRMTMVGDPKIKLQEIGIPFDISESLIVAEQVNSYN---LEKLNMSC 234
Query: 374 NLCLAYKEGVSTYSLREGSKGH--TYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALV 431
NL L KEG++T S + + H L+ G IV R + +GDI+ +NRPP+ H+HSL AL
Sbjct: 235 NLHLLRKEGLNTRSKGQLTSLHKTNQLQVGDIVSRPLENGDIILVNRPPSVHQHSLIALS 294
Query: 432 VYIHDDHTV-KINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHXXX 490
V I +V INPL C PL DFDGDC+H + PQS+ + E+ EL S++ QL ++
Sbjct: 295 VMILPIQSVISINPLCCAPLLGDFDGDCLHGYVPQSIGCRVELQELLSLDHQLFNAQDGR 354
Query: 491 XXXXXXX-XXXXXXXXXVKKGFMDRAAANQMAMFLSLPLPQPALLKAGSGDC-YWTSTQI 548
+ F+++ Q+AM P+P PA++K WT Q+
Sbjct: 355 SLVSLTHDSLTAAYLLTANREFLNKVDMQQLAMLCPFPMPPPAVVKTPKFQIPLWTGEQL 414
Query: 549 LQCALPLSFDC-TGGRYLIRESDILGFDLGRDVLPAVINEIAASVFFGKGPQEALNFFDV 607
LP + D R +I + +++ G L + ++F G ++AL++
Sbjct: 415 FSMLLPPTMDFGVNSRNMISKGEVMASLGGSFWLQNTTTGLFTTMFKHYG-RKALDYLCC 473
Query: 608 LQPFLMECIFSNGFSVGLHDFSISG----AVKRITDRNIG--------KVSPLL------ 649
Q L E + G SV L D +S +K + + G +V L+
Sbjct: 474 SQELLCEYLTLRGLSVSLGDVYLSSDSYSRLKMMDEIYFGLEEAEDACQVMQLMLEPEME 533
Query: 650 -----------------YQL---RFIYNELVAQQLEKHMQDIELPAIKFASKSSRLGDMI 689
Y++ R +++ + D+ +F +K + + +MI
Sbjct: 534 ILRNQNKDEDTLDCISQYKIASERTCVSQVSIAAFKNVYHDLLSQIYQFINKDNSMLEMI 593
Query: 690 DSKSKSALDKVTQQIGFLGQQLFVRGRLYS-------------KGLLEDVASHFKLKCDY 736
D+ SK +L K+ QQ LG QLF ++ K L ++ K C
Sbjct: 594 DAGSKGSLVKLIQQGACLGLQLFAHPLPFTVPSKLNCCMWNNLKALDGGISDAAKSSCG- 652
Query: 737 DGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRD 796
+ Y ++ F GL+P E VH+I R + + L PGTL + LM +RD
Sbjct: 653 ------QSSYAVIGTSFLDGLNPLECFVHAICGRANLFTENAEL--PGTLTRKLMFYMRD 704
Query: 797 VVVCYDGTVRNVCSNSIIQFEYGLKA-------------GDNASYLFPAGEHVGVLAATA 843
+ + YDGTVR+ I++F Y + G +A Y GE VG AA +
Sbjct: 705 LYLAYDGTVRSAYGQQIVEFSYSILEDSTEGGESCVAYDGKDAEYTGLGGEPVGSWAACS 764
Query: 844 MSNPAYKAV------LDASPSSNCSWELMKEILLCKVHFRNEPIDRRVILYLNDCDCGRS 897
+S AY ++ L+ SP LMK ++ N + +L+L+ G
Sbjct: 765 ISEAAYGSLEFPMNSLEYSP-------LMKLKMVLDCCKSNASTNHTALLFLSKRLHGWR 817
Query: 898 YCRENAAYAVKNQLRKVSLKDTAVDFIVEYQQQRKRKGSEIDAGLVGHIHLDEVKLEELK 957
Y E A VKN L +V + + ++ Y +G+ ++ H H+ + K+ +
Sbjct: 818 YGCEYGALEVKNHLERVCFFNLIITVMILYDGH-DVQGTNFSPWIM-HFHVSKDKMLRRR 875
Query: 958 INMAEVFQRCQEKLDSFNRKR-KFNQIFKRTELFFSESCVSP-----NFSAPCLTFIWPA 1011
+N+ V E + +N R + N + R F S++C S + + C++ A
Sbjct: 876 LNVQLVKN---ELIKHYNCMRERMNPMLPRL-CFVSKNCSSAYKWKEHDDSFCMSV---A 928
Query: 1012 GDGNDLHETTKILADTICPALLDTIIQGDPRINSANIIWVNPDTNTWVRNPSKSSNGELA 1071
+ ++ + D + P LL+T I+G W + + S EL
Sbjct: 929 AETSESLIQLDTIRDMVIPLLLETPIKG---------FWASEKVEILCES-LPGSGSELF 978
Query: 1072 LDIILEKESIKQNGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQIQELLGISCTFDQAIQR 1131
L + + K+ + G W + D+C+P++ LID + S P + I GI + ++
Sbjct: 979 LRVTMSKKCLP--GSFWSDLQDACIPIMDLIDWQCSHPDNVYNISGTYGIDAAWKYFVKS 1036
Query: 1132 LAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDATLFTPK 1191
L + + + + + HL + A ++ G G +T G + ++I PF A L P
Sbjct: 1037 LKSVTADIGRDIHKRHLFMAADCLSVTGEFHGLSTKGLRQQRNDMSISSPFAQACLSNPV 1096
Query: 1192 RCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSKFDVLWDAKEIKSNDLDGMDVYNFLH 1251
CF AA++ D LS + + +WGK GTG F++++ K N G +Y LH
Sbjct: 1097 NCFVNAAKQGSMDHLSGTLDAVAWGKEAPSGTGGPFEIVYSGK--VHNLTRGEGIYKNLH 1154
Query: 1252 MVKS-LTNGEEE 1262
+K+ L G+ E
Sbjct: 1155 SIKAELQQGDGE 1166
>Q1L5X9_MARPO (tr|Q1L5X9) DNA-directed RNA polymerase (Fragment) OS=Marchantia
polymorpha GN=RPD1 PE=2 SV=1
Length = 1008
Score = 303 bits (776), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 242/882 (27%), Positives = 385/882 (43%), Gaps = 111/882 (12%)
Query: 449 PLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVK 508
P ADFDGDC+H+F PQ+ ++AE+ +L ++ Q+L S
Sbjct: 1 PYNADFDGDCLHVFVPQTEESRAELHQLMTIPAQILPSPDENTILGLSQDYVLATYLVTS 60
Query: 509 KG-FMDRAAANQMAMFLSLPLPQPALLKAGSGDCYWTSTQILQCALP--LSFDCTGGRYL 565
F+ + + +Q+AM+ LP P ++K+ WT Q++ A+P SF G
Sbjct: 61 SPLFLPKDSMHQLAMWTKKQLPVPTIVKSPKLGPLWTGKQVIDLAIPEGFSFQSNNGATR 120
Query: 566 IRESDILGFDLGRDVLPAVINEIAASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGL 625
I + +IL + L + + + K A+ D Q L E + S GFSV L
Sbjct: 121 IHDGEILSCGEKSNWLASTKGLV--RIIAQKNTDAAVEHIDCSQAVLREWLLSQGFSVSL 178
Query: 626 HDF--------------SISGAVKRIT-------DRNIGKVSPLLYQLRFIYNELVAQQL 664
DF I ++ D+ I ++ I + +
Sbjct: 179 EDFYAAPDQDMRRKLKYKIEDNLEHAQCMFVCRGDKKILNINTSSNASMSILDSAAPSER 238
Query: 665 EKHMQDIELPAIK-FASKSSRLGD--------------MIDSKSKSALDKVTQQIGFLGQ 709
+ +E AI F S++G+ M+ S SK + KV QQIG LG
Sbjct: 239 RRRRHGLEDAAISSFRQTQSQIGETFIESISDSNCLLTMVRSGSKGSNLKVMQQIGSLGF 298
Query: 710 QLFVRGRLYS---KGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHS 766
Q+ L S L +A+ + D GL+K GL+P E VH+
Sbjct: 299 QVIKGEELLSTHKNPKLVRLAASMGYSMENDLQDIWEIR-GLVKSSLLDGLEPHEFFVHA 357
Query: 767 ISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG-----LK 821
IS R+ + R S ++EPG LFK LM LRD+ + YDGTVRN+ IIQFEY +
Sbjct: 358 ISVRDGLFRQSLDIAEPGELFKRLMLFLRDIHIAYDGTVRNMGGLEIIQFEYDGGKCMTQ 417
Query: 822 AGDNASYL----FPAGEHVGVLAATAMSNPAYKAVLDASPSSNCS----WELMKEILLCK 873
+N + L G+ VG+LAATA+S PAY+ +L+A+ EL++E L +
Sbjct: 418 DSENKNTLSNKTVMPGDAVGILAATAISQPAYQVMLEATQCLASRKIRPLELLQESLFPR 477
Query: 874 VHFRNEPIDRRVILYLNDCDCGRSYCRENAAYAVKNQLRKVSLKDTAVDFIVEYQQQRKR 933
+ + DR IL L+ C YC E ++++L+ V+++ A + + Y
Sbjct: 478 STSKLKESDRVSILRLHRCKSDGKYCEERRVLKLQDELQPVTMEILATETAIAYSSDSSE 537
Query: 934 KGSEIDAGL-----------VGHIHLDEVKLEELKINMAEVFQRCQEKL---DSFNRKRK 979
+ +D VGH+ LD++ L E KI+ + R K+ S +RK +
Sbjct: 538 QWEGLDCAATELKQTEFFPWVGHVQLDKMVLTEKKISQEMILDRLHSKVKIHKSVSRKFR 597
Query: 980 FNQIFKRTELFFSESCV-------------SPNFSAPCLTFIWPAGD------------- 1013
I +SC PCL F+
Sbjct: 598 IGNIV----FCIRDSCTCDMNIYQETVKLRQKEVVGPCLHFLLTRSTRGKVRSIKTVKEV 653
Query: 1014 GNDLHETTKILADTICPALLDTIIQGDPRINSANIIWVNPDTNTWVR------NPSKSSN 1067
N+ E ++L + I P +L T+++G ++ S NI+W + + V+ N KS
Sbjct: 654 SNETVELLEVLQNFIIPEILKTVVKGSEKLQSVNILWEDATWSPPVKSEENDSNVMKSGR 713
Query: 1068 GELALDIILEKESIKQNGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQIQELLGISCTFDQ 1127
GEL L++ +++ + G WR V +SC+ + +D +RS PY+I++I+ +LG+ D
Sbjct: 714 GELVLEVTVKELYSQSRGMPWRTVQESCIQFVDYVDWQRSSPYSIQEIKSVLGVDAARDV 773
Query: 1128 AIQRLAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDATL 1187
+QRL + + +HL L+A M G + G + GY+ R L PFT
Sbjct: 774 LLQRLELA---AGNSIGNKHLKLVADFMVYSGEVQGLTSYGYRDWMRSLKFSSPFTAGAF 830
Query: 1188 FTPKRCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSKFDV 1229
P + F A K T+ S ++AS +GK V +GTG+ FD+
Sbjct: 831 RAPIKHFLEAGRKGATERFSGVLASSVFGKKVPLGTGAVFDL 872
>C0JR68_MAIZE (tr|C0JR68) DNA-directed RNA polymerase OS=Zea mays PE=2 SV=1
Length = 1444
Score = 298 bits (764), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 322/1332 (24%), Positives = 550/1332 (41%), Gaps = 218/1332 (16%)
Query: 45 NPFLGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCL-- 102
+P LGLP +CE+CG+ C+GHFG +L +++P + ++ L+ +C CL
Sbjct: 41 SPKLGLPNGSLQCETCGSQRGRDCDGHFGVTKLAATVHNPYFIDDVVHFLNRICPGCLSP 100
Query: 103 -------KMKKTK-------FPSSSSGLAQRLLSPCCQEPNA----------AQVSIREV 138
++++ K + S L ++ P A V R
Sbjct: 101 REGIDTKRLEREKVQATCKYYSKDGSKLYPSIVFKTLSSPRVLLFKSKLHRNASVMERIS 160
Query: 139 KTGDGACYLVLKVSKSKMQDG----FWRFLDKYGYRYEVDHTRALL-PCEVMEMIKRFPL 193
+ A + + +G FW F+ + + + T+ +L P +V M+K+
Sbjct: 161 IVAEAADRMPNRSKGKGSLEGLPLDFWDFVPSENKQVQSNMTKIILSPYQVFYMLKKSDP 220
Query: 194 ETKKKLAGKGYFPQDGYVIKYLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEVI 253
E K+ + ++ + LPV PNC R VE+
Sbjct: 221 ELIKQFVSR----RELLFLSCLPVTPNCH-------------------------RVVEIG 251
Query: 254 RSSRSGEPNFESHQVEAN---DLQSVVDQYLQ---------------IRGCAKPARDIET 295
G F+ D+ +D Y Q + C K ++ + +
Sbjct: 252 YGLPDGRLTFDDRTKAYKRMVDVSRRIDDYRQHPHFSVLASSLVSSRVSECLKSSK-LYS 310
Query: 296 HFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITF 355
+ +D WL K + +SK S RS++ GD ++ E+GIP +++ +
Sbjct: 311 KKADGETSTDTYGMKWL---KDVVLSKRSDNVFRSIMVGDPKIKLWEIGIPEDLSSSLVV 367
Query: 356 EERVNSHNM------CYLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIM 409
E V+S+N C L L + L + + LR+ + L+ G I +R +
Sbjct: 368 SEHVSSYNFQSTNLKCNLHLLAKQELFI--RRNGKLMFLRKADQ----LEIGDIAYRPLQ 421
Query: 410 DGDIVFINRPPTTHKHSLQALVVYIHDDHTV-KINPLICGPLGADFDGDCVHLFYPQSLA 468
DGDI+ INRPP+ H+HSL AL I H+V INPL C P DFDGDC+H + PQS+
Sbjct: 422 DGDIILINRPPSVHQHSLIALSAKILPIHSVVSINPLCCTPFAGDFDGDCLHGYIPQSIR 481
Query: 469 AKAEVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKKG-FMDRAAANQMAMF-LSL 526
++ E+ EL S+ QLL+ F+ ++ Q+ M LS+
Sbjct: 482 SRVELEELVSLHNQLLNMQDGRNLVSLTHDSLAAAHLLTSTDVFLKKSELQQLQMLCLSV 541
Query: 527 PLPQPALLKAGSGD-CYWTSTQILQCALP--LSFDCTGGRYLIRESDILGFDLGRDVLPA 583
P PA++K+ + WT Q+ LP ++F C + I +S++L LG L
Sbjct: 542 STPAPAVIKSMNFQGSLWTGKQLFSMLLPSGMNFSCDTELH-IMDSEVLTCSLGSSWLQN 600
Query: 584 VINEIAASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHDFSISGAVKRITDRNIG 643
+ + SV F + +AL+F Q L E + G SV L D + + R +
Sbjct: 601 NTSGLF-SVMFKQYGCKALDFLSSAQEVLCEFLTMRGLSVSLSDLYMFS--DHYSRRKLA 657
Query: 644 KVSPLLYQLRFIYNELVAQQLEKHMQD-IELPAIK------------------------- 677
+ L +Y A +++K + D I +P +K
Sbjct: 658 EGVKLA-----LYEAEEAFRVKKILLDPINIPVLKCHDETEDVTYRQSDCIQSNPSVIRS 712
Query: 678 ------------------FASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRG---R 716
S + + MI++ SK ++ K QQ +G QL R
Sbjct: 713 SIMAFKDVFRDLLKMVQQHVSNDNSMMVMINAGSKGSMLKYAQQTACIGLQLPASKFPFR 772
Query: 717 LYSKGLLEDVASHFKLKCDYDGDGYPSAE-----YGLLKGCFFHGLDPFEELVHSISTRE 771
+ S+ L ++ + + +Y+ + Y ++K F GL+P E L+H+IS R
Sbjct: 773 IPSQ--LSCISWNGQKSLNYEAESTSERVGGQNLYAVIKNSFIEGLNPLECLLHAISGRA 830
Query: 772 IMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGLKAGDNASYLF- 830
S PGTL + LM LRD+ V YDGTVR+ I+QF Y D+ L
Sbjct: 831 NFF--SENADVPGTLTRKLMYHLRDIHVAYDGTVRSSYGQQIVQFSY-----DSVDDLVD 883
Query: 831 PAGEHVGVLAATAMSNPAYKAV------LDASPSSNCSWELMKEILLCKVHFRNEPIDRR 884
G VG AA ++S AY A+ L+ SP N ++E+ C H D
Sbjct: 884 KLGAPVGCRAACSISEAAYGALEHPVNGLEDSPLMN-----LQEVFKC--HKATNSGDHI 936
Query: 885 VILYLNDCDCGRSYCRENAAYAVKNQLRKVSLKDTAVDFIVEYQQQRKRKGSEIDAGLVG 944
+L+L+ Y E A+ VKN L +V+ D ++ Y K + +
Sbjct: 937 GLLFLSRHLKKYRYGLEYASLEVKNHLERVNFSDLVETIMIIYDGHDKIRN---EGMWTT 993
Query: 945 HIHLDEVKLEELKINMAEVFQRCQEKLDSFNRKRKFNQI----FKRTELFFSESCVSPNF 1000
H H+++ +++ ++ + V ++ D+ R + N I R + + V
Sbjct: 994 HFHINKAMMKKKRLGLRFVVDELAKEYDT-TRDQLNNAIPSIRISRRKCLVGDEGVK--- 1049
Query: 1001 SAPCLTFIWPAGDGNDLHETTKILADTICPALLDTIIQGDPRINSANIIWVNPDTNTWVR 1060
S+ C + + N + + I I P++LDT+++G I
Sbjct: 1050 SSSCCIAVVAHAERNSISQLDTIKTRVI-PSILDTLLKGFLEFKDVEI------------ 1096
Query: 1061 NPSKSSNGELALDIILEKESIKQNGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQIQELLG 1120
+GEL + + + + + G W + ++C+PV+ LID S P + I G
Sbjct: 1097 --QCPHDGELLVKVCMSEHC--KGGRFWPTLQNACIPVMELIDWELSQPSNVSDIFCSYG 1152
Query: 1121 ISCTFDQAIQRLAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQV 1180
I + ++ L ++ + + REHL+++A S++ G ++ G K +L+I
Sbjct: 1153 IDSAWKYFVESLKSATTDTGRNIRREHLLVIADSLSVTGQFHALSSQGLKQQRTRLSISS 1212
Query: 1181 PFTDATLFTPKRCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSKFDVLWDAK--EIKS 1238
PF++A P + F AA++C D+L + + +WGK GT F+++ K E +
Sbjct: 1213 PFSEACFSRPAQSFINAAKQCSVDNLCGSLDAVAWGKEPFNGTSGPFEIMHSGKPHEPEQ 1272
Query: 1239 NDLDGMDVYNFL 1250
N+ +Y+FL
Sbjct: 1273 NE----SIYDFL 1280
>C0JR65_MAIZE (tr|C0JR65) DNA-directed RNA polymerase OS=Zea mays PE=2 SV=1
Length = 1444
Score = 298 bits (763), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 322/1332 (24%), Positives = 551/1332 (41%), Gaps = 218/1332 (16%)
Query: 45 NPFLGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCL-- 102
+P LGLP +CE+CG+ C+GHFG +L +++P + ++ L+ +C CL
Sbjct: 41 SPKLGLPNGSLQCETCGSQRGRDCDGHFGVTKLAATVHNPYFIDDVVHFLNRICPGCLSP 100
Query: 103 -------KMKKTKFPSS-------SSGLAQRLLSPCCQEPNA----------AQVSIREV 138
++++ K ++ S L ++ P A V R
Sbjct: 101 REGIDTKRLEREKVQATCKYCSKDGSKLYPSIVFKTLSSPRVLLFKSKLHRNASVMERIS 160
Query: 139 KTGDGACYLVLKVSKSKMQDG----FWRFLDKYGYRYEVDHTRALL-PCEVMEMIKRFPL 193
+ A + + +G FW F+ + + + T+ +L P +V M+K+
Sbjct: 161 IVAEAADRMPNRSKGKGSLEGLPLDFWDFVPSENKQVQSNMTKIILSPYQVFYMLKKSDP 220
Query: 194 ETKKKLAGKGYFPQDGYVIKYLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEVI 253
E K+ + ++ + LPV PNC R VE+
Sbjct: 221 ELIKQFVSR----RELLFLSCLPVTPNCH-------------------------RVVEIG 251
Query: 254 RSSRSGEPNFESHQVEAN---DLQSVVDQYLQ---------------IRGCAKPARDIET 295
G F+ D+ +D Y Q + C K ++ + +
Sbjct: 252 YGLPDGRLTFDDRTKAYKRMVDVSRRIDDYRQHPHFSVLASSLVSSRVSECLKSSK-LYS 310
Query: 296 HFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITF 355
+ +D WL K + +SK S RS++ GD ++ E+GIP +++ +
Sbjct: 311 KKADGETSTDTYGMKWL---KDVVLSKRSDNVFRSIMVGDPKIKLWEIGIPEDLSSSLVV 367
Query: 356 EERVNSHNM------CYLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIM 409
E V+S+N C L L + L + + LR+ + L+ G I +R +
Sbjct: 368 SEHVSSYNFQSTNLKCNLHLLAKQELFI--RRNGKLMFLRKADQ----LEIGDIAYRPLQ 421
Query: 410 DGDIVFINRPPTTHKHSLQALVVYIHDDHTV-KINPLICGPLGADFDGDCVHLFYPQSLA 468
DGDI+ INRPP+ H+HSL AL I H+V INPL C P DFDGDC+H + PQS+
Sbjct: 422 DGDIILINRPPSVHQHSLIALSAKILPIHSVVSINPLCCTPFAGDFDGDCLHGYIPQSIR 481
Query: 469 AKAEVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKKG-FMDRAAANQMAMF-LSL 526
++ E+ EL S+ QLL+ F+ ++ Q+ M LS+
Sbjct: 482 SRVELEELVSLHNQLLNMQDGRNLVSLTHDSLAAAHLLTSTDVFLKKSELQQLQMLCLSV 541
Query: 527 PLPQPALLKAGSGD-CYWTSTQILQCALP--LSFDCTGGRYLIRESDILGFDLGRDVLPA 583
P PA++K+ + WT Q+ LP ++F C + I +S++L LG L
Sbjct: 542 STPAPAVIKSMNFQGSLWTGKQLFSMLLPSGMNFSCDTELH-IMDSEVLTCSLGSSWLQN 600
Query: 584 VINEIAASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHDFSISGAVKRITDRNIG 643
+ + SV F + +AL+F Q L E + G SV L D + + R +
Sbjct: 601 NTSGLF-SVMFKQYGCKALDFLSSAQEVLCEFLTMRGLSVSLSDLYMFS--DHYSRRKLA 657
Query: 644 KVSPLLYQLRFIYNELVAQQLEKHMQD-IELPAIK------------------------- 677
+ L +Y A +++K + D I +P +K
Sbjct: 658 EGVKLA-----LYEAEEAFRVKKILLDPINIPVLKCHDETEDVTYRQSDCIQSNPSVIRS 712
Query: 678 ------------------FASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRG---R 716
S + + MI++ SK ++ K QQ +G QL R
Sbjct: 713 SIMAFKDVFRDLLKMVQQHVSNDNSMMVMINAGSKGSMLKYAQQTACIGLQLPASKFPFR 772
Query: 717 LYSKGLLEDVASHFKLKCDYDGDGYPSAE-----YGLLKGCFFHGLDPFEELVHSISTRE 771
+ S+ L ++ + + +Y+ + Y ++K F GL+P E L+H+IS R
Sbjct: 773 IPSQ--LSCISWNGQKSLNYEAESTSERVGGQNLYAVIKNSFIEGLNPLECLLHAISGRA 830
Query: 772 IMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGLKAGDNASYLF- 830
S PGTL + LM LRD+ V YDGTVR+ I+QF Y D+ L
Sbjct: 831 NFF--SENADVPGTLTRKLMYHLRDIHVAYDGTVRSSYGQQIVQFSY-----DSVDDLVD 883
Query: 831 PAGEHVGVLAATAMSNPAYKAV------LDASPSSNCSWELMKEILLCKVHFRNEPIDRR 884
G VG AA ++S AY A+ L+ SP N ++E+ C H D
Sbjct: 884 KLGAPVGCRAACSISEAAYGALEHPVNGLEDSPLMN-----LQEVFKC--HKATNSGDHI 936
Query: 885 VILYLNDCDCGRSYCRENAAYAVKNQLRKVSLKDTAVDFIVEYQQQRKRKGSEIDAGLVG 944
+L+L+ Y E A+ VKN L +V+ D ++ Y K + +
Sbjct: 937 GLLFLSRHLKKYRYGLEYASLEVKNHLERVNFSDLVETIMIIYDGHDKIRN---EGMWTT 993
Query: 945 HIHLDEVKLEELKINMAEVFQRCQEKLDSFNRKRKFNQI----FKRTELFFSESCVSPNF 1000
H H+++ +++ ++ + V ++ D+ R + N I R + + V
Sbjct: 994 HFHINKAMMKKKRLGLRFVVDELAKEYDT-TRDQLNNAIPSIRISRRKCLVGDEGVK--- 1049
Query: 1001 SAPCLTFIWPAGDGNDLHETTKILADTICPALLDTIIQGDPRINSANIIWVNPDTNTWVR 1060
S+ C + + N + + I I P++LDT+++G I
Sbjct: 1050 SSSCCIAVVAHAERNSISQLDTIKTRVI-PSILDTLLKGFLEFKDVEI------------ 1096
Query: 1061 NPSKSSNGELALDIILEKESIKQNGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQIQELLG 1120
+GEL + + + + + G W + ++C+PV+ LID S P + I G
Sbjct: 1097 --QCPHDGELLVKVCMSEHC--KGGRFWPTLQNACIPVMELIDWELSQPSNVSDIFCSYG 1152
Query: 1121 ISCTFDQAIQRLAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQV 1180
I + ++ L ++ + + REHL+++A S++ G ++ G K +L+I
Sbjct: 1153 IDSAWKYFVESLKSATTDTGRNIRREHLLVIADSLSVTGQFHALSSQGLKQQRTRLSISS 1212
Query: 1181 PFTDATLFTPKRCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSKFDVLWDAK--EIKS 1238
PF++A P + F AA++C D+L + + +WGK GT F+++ K E +
Sbjct: 1213 PFSEACFSRPAQSFINAAKQCSVDNLCGSLDAVAWGKEPFNGTSGPFEIMHSGKPHEPEQ 1272
Query: 1239 NDLDGMDVYNFL 1250
N+ +Y+FL
Sbjct: 1273 NE----SIYDFL 1280
>K4CP21_SOLLC (tr|K4CP21) DNA-directed RNA polymerase OS=Solanum lycopersicum
GN=Solyc08g080210.2 PE=3 SV=1
Length = 1206
Score = 296 bits (757), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 288/1022 (28%), Positives = 454/1022 (44%), Gaps = 145/1022 (14%)
Query: 312 LDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLV 371
L +K L ++K + + R V+ GD + E+GIP +A+ + E ++ N + L
Sbjct: 53 LKYVKELVLAKRTNHAFRMVVVGDPNIELGEIGIPCHVAENLHMAETLSLRNWERMTDLC 112
Query: 372 DENL-----CLAYKEGVST-YSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKH 425
D + L + GV S+ +G L+ G I+HR ++DGD+V INRPP+ H+H
Sbjct: 113 DLMILQRGGILVRRNGVLVRISVMDG------LQKGDIIHRPLVDGDVVMINRPPSIHQH 166
Query: 426 SLQALVVYIHDDHTV-KINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLL 484
SL AL V I ++V INPL+C P DFDGDC+H + PQS+ + E+ EL ++++QLL
Sbjct: 167 SLIALSVRILPINSVLSINPLVCSPFRGDFDGDCLHGYIPQSIDSTIELSELVALKQQLL 226
Query: 485 SSHXXXXXXXXXXXXXXXXXXXVKKG-FMDRAAANQMAMFLSLPLPQPALLKAGSGD-CY 542
++ G F+DR Q+ MF L A++KA G+ CY
Sbjct: 227 DGQNGQNLLSLSHDSLTAAHLILEPGVFLDRFQMQQLQMFCPRQLGMTAIVKAPPGNICY 286
Query: 543 WTSTQILQCALP--LSFDCTGGRYLIRESDILGFDLGRDVLPAVINEIAASVFFGKGPQE 600
WT Q+ LP L + I E +I+ G L + + S+ G +
Sbjct: 287 WTGKQLFSLLLPSDLEYVFPSNGVCISEGEIVTSSGGSSWLRDASDNLFYSLVKHNG-GD 345
Query: 601 ALNFFDVLQPFLMECIFSNGFSVGLHDFSISG---AVKRITDR---NIGKVSPLLY-QLR 653
L+ Q L E + G SV L D IS + + + D + + L Y QL
Sbjct: 346 TLDLLYAAQTVLCEWLSMRGLSVSLSDLYISADSYSRENMIDEVCSGLQEAERLSYIQLL 405
Query: 654 FI-YNE---------------------LVAQQ------------LEKHMQDIELPAIKFA 679
I YN+ + QQ +K +DI+ +A
Sbjct: 406 MIKYNKDFLSGNLEESKNSMGFDFEFMSIMQQKSASLSQASASAFKKVFRDIQNLVYNYA 465
Query: 680 SKSSRLGDMIDSKSKSALDKVTQQIGFLGQQL------FVRGRLYSKGLLEDVASHFKLK 733
S + L M+ + SK L K+ Q LG Q F R S + SH ++
Sbjct: 466 SNDNSLLAMLKAGSKGNLLKLVQHNMCLGLQQSLVPVSFRMPRQLSCDAWNNHKSHLVIE 525
Query: 734 CDYD-----GDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFK 788
+ G PSA ++K F GL+P E VHS++TR+ +S GTL +
Sbjct: 526 KPHKVPECPGSYIPSA---VVKSSFLAGLNPLECFVHSLTTRDSSFSGHADVS--GTLNR 580
Query: 789 NLMAILRDVVVCYDGTVRNVCSNSIIQFEY--------------GLKAGDNASYLFPAGE 834
LM +RD+ V YDGTVRN N I+QF Y L++ ++A G
Sbjct: 581 KLMFFMRDLYVGYDGTVRNAYGNQIVQFSYYEAEQIASTKVTGEALESHNHAI----GGH 636
Query: 835 HVGVLAATAMSNPAYKAV------LDASPSSNCSWELMKEILLCKVHFRNEPIDRRVILY 888
VG LAA A+S AY A+ L++SP N +K+IL R ++ ++
Sbjct: 637 PVGSLAACAISEAAYCALDQPVSALESSPLLN-----LKKILESGAGSRTG--EKTASMF 689
Query: 889 LNDCDCGR-SYCRENAAYAVKNQLRKVSLKDTAVDFIVEYQQQRKRKGSEIDAGLVGHIH 947
L+ GR ++ E A VK L ++ L + ++ + + ++ S + V H H
Sbjct: 690 LSK-RLGRWAHGFEYGALEVKGHLERLLLSEVVSTVMICFSPETRK--STHNCPWVCHFH 746
Query: 948 LDEVKLEELKINMAEVFQRCQEKLDSFNRKRKFNQIFKRTEL----FFSESC----VSPN 999
+D+ ++ ++ + V LD+ N + + +L + C V
Sbjct: 747 IDKENVKTRRLKLRSV-------LDALNMRYRAATTKAGNDLPNLHITCKDCSVAEVQKE 799
Query: 1000 FSAPCLTF--IWPAGDGNDLHETTKILADTICPALLDTIIQGDPRINSANIIWVNPDTNT 1057
S C+T + + D + L +T L D + P LL+T+I+G +I+W
Sbjct: 800 KSEICITVSVVETSKDPSSLLDT---LRDVVIPFLLETVIKGFSAFKKVDILWKE----- 851
Query: 1058 WVRNPSKSS---NGELALDIILEK--ESIKQNGDAWRIVLDSCLPVLHLIDTRRSIPYAI 1112
+ +PSKSS GEL L + + + + IK W ++DSCL + LID RS P +
Sbjct: 852 -LPSPSKSSRGPTGELYLQVFMSESCDRIK----FWNALVDSCLQIRDLIDWERSYPDDV 906
Query: 1113 KQIQELLGISCTFDQAIQRLAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKAL 1172
+ GI ++ + +L ++V K +L EHL+L A S+T G V + G
Sbjct: 907 HDLTVAYGIDVAWEYFLCKLHSAVSETGKKILPEHLVLAADSLTTTGEFVPLSAKGLTLQ 966
Query: 1173 ARQLNIQVPFTDATLFTPKRCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSKFDVLWD 1232
+ + PF A P F RAA+ +D L + S +WGK ++GTGS FD+++
Sbjct: 967 RKAAGVVSPFMQACFTNPGDSFVRAAKMGLSDDLQGSLESLAWGKTPSIGTGSSFDIMYS 1026
Query: 1233 AK 1234
K
Sbjct: 1027 GK 1028
>Q1L5X6_SOLLC (tr|Q1L5X6) DNA-directed RNA polymerase (Fragment) OS=Solanum
lycopersicum GN=RPD1 PE=2 SV=1
Length = 1138
Score = 290 bits (743), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 284/1005 (28%), Positives = 445/1005 (44%), Gaps = 145/1005 (14%)
Query: 329 RSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLVDENL-----CLAYKEGV 383
R+V+ GD + E+GIP A+ + E ++ N + L D + L + GV
Sbjct: 2 RTVVVGDPNIELGEIGIPCXXAENLHMAETLSLRNWERMTDLCDLMILQRGGILVRRNGV 61
Query: 384 ST-YSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALVVYIHDDHTV-K 441
S+ +G L+ G I+HR ++DGD+V INRPP+ H+HSL AL V I ++V
Sbjct: 62 LVRISVMDG------LQKGDIIHRPLVDGDVVMINRPPSIHQHSLIALSVRILPINSVLS 115
Query: 442 INPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHXXXXXXXXXXXXXX 501
INPL+C P DFDGDC+H + PQS+ + E+ EL ++++QLL
Sbjct: 116 INPLVCSPFRGDFDGDCLHGYIPQSIDSTIELSELVALKQQLLDGQNGQNLLSLSHDSLT 175
Query: 502 XXXXXVKKG-FMDRAAANQMAMFLSLPLPQPALLKAGSGD-CYWTSTQILQCALP--LSF 557
++ G F+DR Q+ MF L A++KA G+ CYWT Q+ LP L +
Sbjct: 176 AAHLILEPGVFLDRFQMQQLQMFCPRQLGMTAIVKAPPGNICYWTGKQLFSLLLPSDLEY 235
Query: 558 DCTGGRYLIRESDILGFDLGRDVLPAVINEIAASVFFGKGPQEALNFFDVLQPFLMECIF 617
I E +I+ G L + + S+ G + L+ Q L E +
Sbjct: 236 VFPSNGVCISEGEIVTSSGGSSWLRDASDNLFYSLVKHNG-GDTLDLLYAAQTVLCEWLS 294
Query: 618 SNGFSVGLHDFSISG---AVKRITDR---NIGKVSPLLY-QLRFI-YNE----------- 658
G SV L D IS + + + D + + L Y QL I YN+
Sbjct: 295 MRGLSVSLSDLYISADSYSRENMIDEVCSGLQEAERLSYIQLLMIKYNKDFLSGNLEESK 354
Query: 659 ----------LVAQQ------------LEKHMQDIELPAIKFASKSSRLGDMIDSKSKSA 696
+ QQ +K +DI+ +AS + L M+ + SK
Sbjct: 355 NSMGFDFEFMSIMQQKSASLSQASASAFKKVFRDIQNLVYNYASNDNSLLAMLKAGSKGN 414
Query: 697 LDKVTQQIGFLGQQL------FVRGRLYSKGLLEDVASHFKLKCDYD-----GDGYPSAE 745
L K+ Q LG Q F R S + SH ++ + G PSA
Sbjct: 415 LLKLVQHNMCLGLQQSLVPVSFRMPRQLSCDAWNNHKSHLVIEKPHKVPECPGSYIPSA- 473
Query: 746 YGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTV 805
++K F GL+P E VHS++TR+ +S GTL + LM +RD+ V YDGTV
Sbjct: 474 --VVKSSFLAGLNPLECFVHSLTTRDSSFSGHADVS--GTLNRKLMFFMRDLYVGYDGTV 529
Query: 806 RNVCSNSIIQFEY--------------GLKAGDNASYLFPAGEHVGVLAATAMSNPAYKA 851
RN N I+QF Y L++ ++A G VG LAA A+S AY A
Sbjct: 530 RNAYGNQIVQFSYYEAEQIASTKVTGEALESHNHAI----GGHPVGSLAACAISEAAYCA 585
Query: 852 V------LDASPSSNCSWELMKEILLCKVHFRNEPIDRRVILYLNDCDCGR-SYCRENAA 904
+ L++SP N +K+IL R ++ ++L+ GR ++ E A
Sbjct: 586 LDQPVSALESSPLLN-----LKKILESGAGSRTG--EKTASMFLSK-RLGRWAHGFEYGA 637
Query: 905 YAVKNQLRKVSLKDTAVDFIVEYQQQRKRKGSEIDAGLVGHIHLDEVKLEELKINMAEVF 964
VK L ++ L + ++ + + ++ S + V H H+D+ ++ ++ + V
Sbjct: 638 LEVKGHLERLLLSEVVSTVMICFSPETRK--STHNCPWVCHFHIDKENVKTRRLKLRSV- 694
Query: 965 QRCQEKLDSFNRKRKFNQIFKRTEL----FFSESC----VSPNFSAPCLTF--IWPAGDG 1014
LD+ N + + +L + C V S C+T + + D
Sbjct: 695 ------LDALNMRYRAATTKAGNDLPNLHITCKDCSVAEVQKEKSEICITVSVVETSKDP 748
Query: 1015 NDLHETTKILADTICPALLDTIIQGDPRINSANIIWVNPDTNTWVRNPSKSS---NGELA 1071
+ L +T L D + P LL+T+I+G +I+W + +PSKSS GEL
Sbjct: 749 SSLLDT---LRDVVIPFLLETVIKGFSAFKKVDILWKE------LPSPSKSSRGPTGELY 799
Query: 1072 LDIILEK--ESIKQNGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQIQELLGISCTFDQAI 1129
L + + + + IK W ++DSCL + LID RS P + + GI ++ +
Sbjct: 800 LQVFMSESCDRIK----FWNALVDSCLQIRDLIDWERSYPDDVHDLTVAYGIDVAWEYFL 855
Query: 1130 QRLAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDATLFT 1189
+L ++V K +L EHL+L A S+T G V + G + + PF A
Sbjct: 856 CKLHSAVSETGKKILPEHLVLAADSLTTTGEFVPLSAKGLTLQRKAAGVVSPFMQACFTN 915
Query: 1190 PKRCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSKFDVLWDAK 1234
P F RAA+ +D L + S +WGK ++GTGS FD+++ K
Sbjct: 916 PGDSFVRAAKMGLSDDLQGSLESLAWGKTPSIGTGSSFDIMYSGK 960
>M4EFP9_BRARP (tr|M4EFP9) DNA-directed RNA polymerase OS=Brassica rapa subsp.
pekinensis GN=Bra027611 PE=3 SV=1
Length = 1443
Score = 285 bits (729), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 262/1024 (25%), Positives = 441/1024 (43%), Gaps = 105/1024 (10%)
Query: 304 SDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHN 363
SD L MK + + K S + R+V+ GD ++NE+GIP IA+R+ E +N N
Sbjct: 287 SDTPELRGLRFMKDVLLGKRSDHTFRTVVVGDPSLKLNEIGIPRSIAERLQVSENLNDWN 346
Query: 364 MCYLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTH 423
L L + V G + L+ G R + DGD V +NRPP+ H
Sbjct: 347 RDRLVTSCFHKLLEKGETHVRRGGRLVGIRAIDDLQTGDSFLRTLKDGDTVLMNRPPSIH 406
Query: 424 KHSLQALVV-YIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQ 482
+HSL A+ V + V +NP+ C P DFDGDC+H + PQS+ AKAE+ EL +++KQ
Sbjct: 407 QHSLIAMSVKVLPTTSVVSLNPICCLPFRGDFDGDCLHGYVPQSIQAKAELEELVALDKQ 466
Query: 483 LLSSHXXXXXXX--XXXXXXXXXXXXVKKGFMDRAAANQMAMFLSLPLPQPALLKAGS-- 538
L++ F++RA Q+ M+ LP+PA+++ S
Sbjct: 467 LVNRQNGRNLLSLGQDSLTAAYLVNVETNCFLNRAEMQQLQMYCPFELPRPAIIRGSSTS 526
Query: 539 GDCYWTSTQIL--------QCALPLSFDCTGGRYLIRESDILGFDLGRDVLPAVINEIAA 590
+ WT Q+ + A PL+ L+ SD G+ RD I +
Sbjct: 527 SEPQWTGKQLFGMLFPPGFEYAYPLNNVVVTNGELLSSSDGSGW--LRDGEGNFIQGL-- 582
Query: 591 SVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHDFSISG---AVKRITDR------- 640
++ L+ Q L + + + G SV L D + + + +T+
Sbjct: 583 ---MKHDKEKVLDIIFSAQEMLSQWLLNRGLSVSLSDLYFASDKHSRRNLTEEISYGLQE 639
Query: 641 --NIGKVSPLLYQLR--------------------FIY--------NELVAQQLEKHMQD 670
+ L+ + R F Y ++L + +D
Sbjct: 640 AEQVCNKQQLMVESRRDFLAVNGEEDTVVADDLELFCYERQRSATLSKLAVSAFKDAYRD 699
Query: 671 IELPAIKFASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQ------LFVRGRLYSKGLLE 724
++ A ++ +S+ M + SK + K+ Q +G Q F R +
Sbjct: 700 VQALAYRYGDQSNAFLVMSKAGSKGNMGKLAQHSMCIGLQNSSVALSFGFPRKLTCASWN 759
Query: 725 DVASHFKLKCDYDGDGYPS-AEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEP 783
D S + D + S +G+++ F GL+P E VHS+++R+ + L P
Sbjct: 760 DPNSPLRGARGEDRTAHESFVPFGVVESSFLTGLNPLESFVHSVTSRDSSFSGNADL--P 817
Query: 784 GTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGLKAGDNASYLFPAGEHVGVLAATA 843
GTL + LM +RD+ YDGTVRN N ++QF Y ++ D+A GE VG L+A A
Sbjct: 818 GTLSRKLMFFMRDIYAAYDGTVRNSFGNHLVQFRY--ESSDDAEEDM-TGEAVGSLSACA 874
Query: 844 MSNPAYKAV------LDASPSSNCSWELMKEILLCKVHFRNEPIDRRVILYLNDCDCGRS 897
++ AY A+ L+ SP N +K +L C + ++ + LYL++ +
Sbjct: 875 ITEAAYSALDQPISLLETSPLLN-----LKNVLECGS--KKGLKEQTMSLYLSETLSKKK 927
Query: 898 YCRENAAYAVKNQLRKVSLKDTAVDFIVEYQQQRKRKGSEID-AGLVGHIHLDEVKLEEL 956
+ E A +K L K+ + F R + + + V H H+ + L++
Sbjct: 928 HGFEYGALDIKRHLEKLCFSEIVSTF-------SPRTNTRMPMSSWVCHFHISKKVLKQN 980
Query: 957 KINMAEVFQRCQEKLDSFNRKRKFNQIFKRTELFFSESCVSPNFSAP----CLTFIWPAG 1012
++++ V ++ NRK++ ++ C + + C+T
Sbjct: 981 QLDLESVVSSLNKQYA--NRKKELKLDVIDLDIQSKNHCSWDDKAMEDDRVCITVTVLEA 1038
Query: 1013 DGNDLHETTKILADTICPALLDTIIQGDPRINSANIIWVNPDTNTWVRNPSKSSNGELAL 1072
+D E I + P LLD+ ++G I +I+WV D + K GEL L
Sbjct: 1039 SRHDSLELDAIRL-VLIPFLLDSPVKGYREIKKVDILWV--DRPKAPQRNKKGLAGELFL 1095
Query: 1073 DIILEKESIKQNGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQIQELLGISCTFDQAIQRL 1132
+ + ++ W +L++CLP++ +ID RS P I+Q + GI + L
Sbjct: 1096 KVTMH--GVRGKRSFWSALLETCLPIMDMIDWTRSHPDNIRQCCSVYGIDAGRSIFLADL 1153
Query: 1133 AASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDATLFTPKR 1192
++V K +LREHL+L+A S++ G V N G+ + + PF A +P +
Sbjct: 1154 ESAVSDTGKAMLREHLLLVADSLSVTGEFVALNPKGWSRQRQAESTPAPFAQACFSSPSQ 1213
Query: 1193 CFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSKFDVLWDAKEIKSNDLDGMDVYNFLHM 1252
CF +AA++ TD L + + +WGK + GTG +F+++ K +DVY FL
Sbjct: 1214 CFLKAAKEGVTDELEGSIDALAWGKVPSFGTGDQFEIIISPKN-HGFSTPVVDVYGFLSR 1272
Query: 1253 VKSL 1256
+L
Sbjct: 1273 TATL 1276
>Q01JX0_ORYSA (tr|Q01JX0) DNA-directed RNA polymerase OS=Oryza sativa
GN=OSIGBa0147H17.3 PE=3 SV=1
Length = 1407
Score = 283 bits (724), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 317/1312 (24%), Positives = 537/1312 (40%), Gaps = 222/1312 (16%)
Query: 45 NPFLGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKM 104
N LGLP +C +CG+ C+GHFG I+L +++ + E+ ++L+ +C CL +
Sbjct: 44 NAKLGLPNGAPQCATCGSRSIRDCDGHFGVIKLAATVHNSYFIEEVVQLLNQICPGCLTL 103
Query: 105 KKTKFPSSSSGLA-QRLLSPCCQEPNAAQVSI------------------REVKTGDGAC 145
K+ + G Q C ++ + SI R D
Sbjct: 104 KQNGDTKKADGTTIQGTCKYCSKDGSKLYPSIIFKMLTSPRVTLSRSKLHRNTSVMDKMS 163
Query: 146 YL------VLKVSKSK-----MQDGFWRFLDKYGYRYEVDHTRALL-PCEVMEMIKRFPL 193
+ V SK+K + FW F+ + T+ +L P +V M+K+
Sbjct: 164 IIAEVAGGVAHKSKNKAPHETLPQDFWDFIPDDNQPPIFNVTKKILSPYQVFHMLKKLDP 223
Query: 194 ETKKKLAGKGYFPQDGYVIKYLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEVI 253
E ++ + ++ + LPV PNC +V +
Sbjct: 224 ELINQVTRR----RELLFLSCLPVTPNC--------------------------HRVAEM 253
Query: 254 RSSRSGEPNFESHQVEANDLQSVVDQYLQIRGCAKPARDIETHFGVNKELSDASNKAWLD 313
S P + + +VD Y +K + D E S +++ +
Sbjct: 254 PYGHSDGPRL-AFDDRTKAYKRMVDLY------SKKSDD---------ESSASTDTYGIK 297
Query: 314 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNM------CYL 367
+K + +SK S + RS++ GD +NE+GIP +A + E+V+S+N C L
Sbjct: 298 WLKDIILSKRSDNAFRSIMVGDPKINLNEIGIPMGLALNLVVSEQVSSYNFETINLKCNL 357
Query: 368 QKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSL 427
L E L L + G + +R+ ++ L+ G I +R + DGD+V +NRPP+ H+HSL
Sbjct: 358 HLLTKEVL-LVRRNGNLIF-VRKANQ----LEIGDIAYRLLQDGDLVLVNRPPSVHQHSL 411
Query: 428 QALVV-YIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSS 486
AL + V INPL C P DFDGDC+H + PQ L ++ E+ EL S+ QLL+
Sbjct: 412 IALSAKLLSTQSAVSINPLCCDPFKGDFDGDCLHGYIPQCLQSRIELEELVSLSGQLLNQ 471
Query: 487 HXXXXXXXXXXXXXXXXXXXVKKG-FMDRAAANQMAMF---LSLPLPQPALLKA-GSGDC 541
F+++A Q+ M +SL P P++ K+ S
Sbjct: 472 QDGRSLVSLTHDSLAAAHQLTNADVFLEKAEFQQLQMLSSSISLT-PMPSVFKSTNSQGP 530
Query: 542 YWTSTQILQCALPLSFDCTGGRYL-IRESDILGFDLGRDVLPAVINEIAASVFFGKGPQE 600
WT Q+ LP + + + L I++S++L G L + + SV F + +
Sbjct: 531 LWTGKQLFGMLLPYGMNISFDQKLHIKDSEVLTCSSGSFWLQNNTSSL-FSVMFKEYGCK 589
Query: 601 ALNFFDVLQPFLMECIFSNGFSVGLHD---FSISGAVKRITDR---NIGKVSPLLYQLRF 654
AL F Q L E + G SV L D FS + +++++ + + +
Sbjct: 590 ALEFLSSTQDVLCEFLTMWGLSVSLSDLYLFSDHYSRRKLSEEVHLALDEAEEAFQIKQI 649
Query: 655 IYNELVAQQLEKH--------------MQDIELPAIK-------------------FASK 681
+ N + L+ + + LP I+ + SK
Sbjct: 650 LLNSVSIPNLKYYDGGDDRSNTDEQSGFTQVSLPIIRSSMTSFKSVFNDLLKMVQQYVSK 709
Query: 682 SSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRG---RLYSKGLLEDVASHFKLKCDYDG 738
+ + MI+S SK ++ K QQ +G QL R+ S+ H L C+
Sbjct: 710 DNSMMTMINSGSKGSVLKFVQQTACVGLQLPASKFPFRIPSQLSCVSWNRHKSLNCEIT- 768
Query: 739 DGYPSA-----EYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAI 793
DG Y +++ F GL+P E L+H+IS R S PGTL + LM
Sbjct: 769 DGTSECVGGQDMYAVIRNSFLDGLNPLECLLHAISGRANFF--SENADVPGTLTRKLMYH 826
Query: 794 LRDVVVCYDGTVRNVCSNSIIQFEYGLKAGDNASYLFPAGE---HVGVLAATAMSNPAYK 850
LRD V YDGTVR+ I++F Y G + + GE VG AA ++S AY
Sbjct: 827 LRDTYVAYDGTVRSSYGQQIVRFSYDTADGMYSDHDL-EGEPVAPVGSWAACSISEAAYG 885
Query: 851 AV------LDASPSSNCSWELMKEILLCKVHFRNEPIDRRVILYLNDCDCGRSYCRENAA 904
A+ L+ SP N ++E+L C H +D +L+L+ Y E A+
Sbjct: 886 ALDHPVNSLEDSPLMN-----LQEVLKC--HKGTNSLDHTGLLFLSKHLRKYRYGFEYAS 938
Query: 905 YAVKNQLRKVSLKDTAVDFIVEYQQQRKRKGSEIDAGLVGHIHLDEVKLEELKINMAEVF 964
VK+ L +V D V E +KI +
Sbjct: 939 LEVKDHLERVDFSDM-------------------------------VDTETMKIKRLGLE 967
Query: 965 QRCQEKLDSFNRKRK-FNQIFKRTELFFSESCVSPNF--SAPCLTFIWPAGDGNDLHETT 1021
+E +D +N RK N + S+ V + C + + N + +
Sbjct: 968 FIVREIIDQYNTLRKQLNNAIPSVSISNSKCSVGNECVKNQTCCVSMVVQVEINSMSQ-L 1026
Query: 1022 KILADTICPALLDTIIQGDPRINSANIIWVNPDTNTWVRNPSKSSNGELALDIILEKESI 1081
++ + + P++L T+++G + + + EL L + + +
Sbjct: 1027 DVIKERVIPSILATLLKGFLEFKNVKV--------------QCQEDNELVLKVGMSEHC- 1071
Query: 1082 KQNGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQIQELLGISCTFDQAIQRLAASVKMVAK 1141
++G W + ++C+P++ LID RS P + GI + ++ L ++ + +
Sbjct: 1072 -KSGKFWATLQNACIPIMELIDWERSRPERVYDNFCSYGIDSAWKFFVESLRSTTDAIGR 1130
Query: 1142 GVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDATLFTPKRCFERAAEKC 1201
+ R+HL+++A ++ G G ++ G K L+I PF++A P F AA++
Sbjct: 1131 NIHRQHLLVVADCLSVSGQFHGLSSQGLKQQRTWLSISSPFSEACFSRPAHSFINAAKRD 1190
Query: 1202 HTDSLSSIVASCSWGKPVAVGTGSKFDVLWDAK--EIKSNDLDGMDVYNFLH 1251
D+LS + + +WGK G+ F +L+ K E K N+ +Y+FLH
Sbjct: 1191 SVDNLSGTLDAIAWGKEPCTGSSGPFKILYSGKSHETKQNE----HIYDFLH 1238
>Q1L5X5_ANTMA (tr|Q1L5X5) DNA-directed RNA polymerase (Fragment) OS=Antirrhinum
majus GN=RPD1 PE=2 SV=1
Length = 1112
Score = 282 bits (722), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 256/996 (25%), Positives = 433/996 (43%), Gaps = 99/996 (9%)
Query: 329 RSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLVDENLCLAYKEGVSTYSL 388
R+V+ GD R++E+G+P EIA+ + + + N L+ D L + V+
Sbjct: 2 RTVVVGDPRIRVDEIGLPIEIAKNMLVSDNIYLWNWDKLESCCDLMLRRNGQFSVTRDGQ 61
Query: 389 REGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALVVYIHD-DHTVKINPLIC 447
+ + L+ G ++R ++DGDIV INRPP+ H+HSL AL V I + V INPL C
Sbjct: 62 KTCVRSADMLRTGDSIYRPLIDGDIVLINRPPSIHQHSLIALSVKILPINSVVSINPLTC 121
Query: 448 GPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXV 507
PL DFDGDC+H + PQS+ + E+ EL ++ KQL++
Sbjct: 122 SPLRGDFDGDCLHGYVPQSVNTRVELKELVTLNKQLVNGQSGQNLLSLSQDSLTAAHLIS 181
Query: 508 KKG-FMDRAAANQMAMFLSLPLPQPALLKAGSGDC-YWTSTQILQCALPLSFDCTGGR-- 563
+ G F+++ Q+ MF + PA++++ S + +WT Q+ LPL F+ +
Sbjct: 182 QDGVFLNKPEMQQLQMFSAWIPMLPAIIQSTSRETSFWTGKQLFSQLLPLDFEFSNASNG 241
Query: 564 YLIRESDILGFDLGRDVLPAVINEIAASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSV 623
I+ +++ F G L E P++ L+ Q L E + G SV
Sbjct: 242 VGIKHGELVSFSDGSSWLRDS-GENLFQCLLRHCPEKTLDILHAAQEVLCEWLSRRGLSV 300
Query: 624 GLHDFSISG---AVKRITD---------RNIGKVSPLL--YQLRFIYNE----------- 658
L D +S + K + D + +S L+ + RF+
Sbjct: 301 SLSDLCLSSDPQSRKNLLDDIACGLEEAEKMSDISLLMVGHNQRFLIENSEEDEDMLKSK 360
Query: 659 ---LVAQQLEKHMQDIELPAIK------------FASKSSRLGDMIDSKSKSALDKVTQQ 703
VAQQ + L A K +A ++ L M+ + SK L K+ Q
Sbjct: 361 EHLYVAQQTSAELCQASLFASKSVFRDMQNLIYHYAGDTNSLLAMLKAGSKGNLQKLFQH 420
Query: 704 IGFLGQQLFVRGRLYSKGLLEDVAS------HFKLKCDYDGDGYPSAEY---GLLKGCFF 754
LG Q + +S AS H L DG Y ++ +
Sbjct: 421 SMCLGLQHSLTPVSFSMPHYLSCASWNNQKNHLSLY-RLDGTREILDSYIPCTVVSSSYL 479
Query: 755 HGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSII 814
GL+P E +HS++TR+ +S GTL + LM +RD++ YDGTVRN + I+
Sbjct: 480 MGLNPLESFLHSLTTRDSSFSGQADVS--GTLTRKLMFFMRDIITGYDGTVRNSYGSQIV 537
Query: 815 QFEYGLKAGDNASY---LFPAGEHVGVLAATAMSNPAYKAV------LDASPSSNCSWEL 865
QF+YG GD ++ + G VG LAA A+S AY A+ L+ SP
Sbjct: 538 QFDYG--TGDMSAVNSDVLMGGHPVGSLAACAISEAAYSALDQPVSALEPSP-----LIA 590
Query: 866 MKEILLCKVHFRNEPIDRRVILYLNDCDCGRSYCRENAAYAVKNQLRKVSLKDTAVDFIV 925
+K++L C V +N + L+L+ E A VK+ + + + + +
Sbjct: 591 LKKVLDCGV--KNNTGGKSASLFLSRRLGKWVNGFEFGALEVKDHMESLLFSEVVSEVTI 648
Query: 926 EYQQQRKRKGSEIDAGLVGHIHLDEVKLEELKINMAEVFQRCQEKLDSFNRKRKF---NQ 982
+ +R+ S V + +++ + + + V + ++ +K K N
Sbjct: 649 SFSTERRTNISP----WVCNFCINKEVFMKRNLKLESVVHTLRANCNATPKKMKLKLPNL 704
Query: 983 IFKRTELFFSESCVSPNFSAPCLTFIWPAGDGNDLH-------ETTKILADTICPALLDT 1035
+ + + SE+ + S C++ + ++LH E L + + P LL T
Sbjct: 705 LIENKDC--SEADFHEDSSRICISVAVSQNELSNLHFGSLKEYEILDYLRNMVIPVLLRT 762
Query: 1036 IIQGDPRINSANIIWVNPDTNTWVRNPSKSSNGELALDIILEKESIKQNGDAWRIVLDSC 1095
+++G P +I+W + + + SK S+GE + + + + + W I+++
Sbjct: 763 VVKGFPEFKKVDILWKDEQSRSRF---SKCSSGEPYVRVFMSENC--ERARFWNILVEKS 817
Query: 1096 LPVLHLIDTRRSIPYAIKQIQELLGISCTFDQAIQRLAASVKMVAKGVLREHLILLASSM 1155
L + LID RS P + E GI + + L +++ K +L EHLI A+ +
Sbjct: 818 LRIRSLIDWDRSHPDDVHDYGEAFGIDTAWMCFVNSLNSAISETGKTILPEHLIATANCL 877
Query: 1156 TCGGNLVGFNTGGYKALARQLNIQVPFTDATLFTPKRCFERAAEKCHTDSLSSIVASCSW 1215
+ G V N G ++ I PF A P CF +AA+ D+L V S +W
Sbjct: 878 SMTGEFVSLNAKGLAQQRKEATINSPFVQACFSNPSDCFIKAAKMGQMDNLQGSVDSLAW 937
Query: 1216 GKPVAVGTGSKFDVLWDAKEIKSNDLDGMDVYNFLH 1251
G+ +GTG +FD+++ K + + DVY+ L+
Sbjct: 938 GQTPPIGTGGQFDIIYSGKGHEPS--KPTDVYSLLN 971
>G7KER5_MEDTR (tr|G7KER5) DNA-directed RNA polymerase OS=Medicago truncatula
GN=MTR_5g011000 PE=3 SV=1
Length = 1687
Score = 278 bits (712), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 280/1068 (26%), Positives = 450/1068 (42%), Gaps = 151/1068 (14%)
Query: 292 DIETHFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQ 351
+I T K +A N + L MK + + K + + R+V+ GD ++E+GIP +IA+
Sbjct: 451 NIFTELQQRKVGENACNSSGLRWMKDVVLGKRNDCTFRTVVVGDPDLELSEIGIPCQIAE 510
Query: 352 RITFEERVNSHN-----MCYLQKLVDENLCLAYKEG--VSTYSLREGSKGHTYLKPGQIV 404
+ E VN N C +L+++ + G V Y + L+ G I
Sbjct: 511 ALQVSEYVNRQNRQNLLYCCELRLLEKGQINVRRNGNPVVLYKKED-------LQIGDIF 563
Query: 405 HRRIMDGDIVFINRPPTTHKHSLQALVVYIHD-DHTVKINPLICGPLGADFDGDCVHLFY 463
+R ++DGD V INRPP+ H+HS+ AL V + V INP+ C PL DFDGDC+H +
Sbjct: 564 YRPLVDGDKVLINRPPSIHQHSMIALTVRVLPISSVVSINPICCSPLRGDFDGDCLHGYI 623
Query: 464 PQSLAAKAEVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKKGF-MDRAAANQMAM 522
PQS+ A+ E+ EL ++++QL++ ++ G + Q+ M
Sbjct: 624 PQSVGARVELNELVALDRQLINGQSGGNLLSLSQDSLTAAHLLLEDGVGFNIYQVQQLEM 683
Query: 523 FLSLPLPQPALLKAGSGDC-YWTSTQILQCALPLSFDCT--GGRYLIRESDILGFDLGRD 579
+ L PA+ KA S + +W+ Q+ LP FD +++ +++
Sbjct: 684 LCNKELTSPAIFKAPSSNTPFWSGKQLFSMLLPSKFDYAFPSNDVFVKDGELISCSESSG 743
Query: 580 VLPAVINEIAASV---FFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHDFSISGAVKR 636
L N + S+ F GK L+ Q L E + GFSV L D +S
Sbjct: 744 WLRDSENNVFQSLVEHFQGK----ILDVLHGAQKALCEWLSMTGFSVSLSDLYLSS--DS 797
Query: 637 ITDRNIGKVSPLLYQLRFI-----YNELVAQQLE-------------------------- 665
+N+ + + Y LR +N+L+
Sbjct: 798 YARKNM--MEEISYGLRVAEQACDFNQLLVDHYSDFLSASPEENEKFVTVDVDRLNHERQ 855
Query: 666 -------------KHM-QDIELPAIKFASKSSRLGDMIDSKSKSALDKVTQQIGFLG-QQ 710
+H+ ++I+ A K A K + M + SK L K+ Q LG Q
Sbjct: 856 ISAAQSQASVDAFRHVFRNIQSLADKHACKDNSFLAMFKAGSKGNLLKLVQHSMCLGLQH 915
Query: 711 LFVR------------GRLYSKGL--LEDVASHFKLKCDYDGDGYPSAEYGLLKGCFFHG 756
VR G KGL +E + + K Y + +++ F G
Sbjct: 916 SLVRLSYRIPRELSCAGWNSQKGLHSMEMSSDTLEPKQSY-------IAHAVVESSFLTG 968
Query: 757 LDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQF 816
L+P E VHS++ R+ + L PGTL + LM +RD+ YDGTVRN+ N +IQF
Sbjct: 969 LNPLECFVHSVTNRDSSFSDNADL--PGTLTRRLMFFMRDMYDAYDGTVRNLYGNQLIQF 1026
Query: 817 EYGLKAGDNASYLFP----AGEHVGVLAATAMSNPAYKA------VLDASPSSNCSWELM 866
Y + + F GE VG L+A A+S AY A +L+ASP N +
Sbjct: 1027 SYDAEEDSSCDSYFREDIIGGEPVGALSACAVSEAAYSALSQPISLLEASPLLN-----L 1081
Query: 867 KEILLCKVHFRNEPIDRRVILYLNDCDCGRSYCRENAAYAVKNQLRKVSLKDTAVDFIVE 926
K +L C R + D+ V L+L++ + E AA VKN L + + ++
Sbjct: 1082 KNVLECGS--RKKGGDQTVSLFLSEKIGKQRNGFEYAALEVKNYLERYMFSNIVSTVMII 1139
Query: 927 YQQQRKRKGSEID-AGLVGHIHLDEVKLEELKINMAEVFQRCQEKLDSFNRKRKF----- 980
+ Q S++ + V H HLD+ + K+ + + ++ DSF R+ K
Sbjct: 1140 FTPQH---CSQVKYSPWVCHFHLDKENVTRRKLEVHSIIDSLYQQYDSFRRESKVILPSL 1196
Query: 981 ------NQIFKRTELFFSESCVSPNFSAPCLTFIWPAGDGNDLHETTKILAD-------- 1026
+ + E C + T + DG D T ++ D
Sbjct: 1197 KISSKSGREVENKEGQTCSKCQDYKANEGGETSVGNEKDGEDCI-TVAVVEDSKNSVQLD 1255
Query: 1027 ----TICPALLDTIIQGDPRINSANIIWVNPDTNTWVRNPSKSSNGELALDIILEKESIK 1082
++ P LL T I+G I +I+W + T N S GEL L + + S
Sbjct: 1256 SVRKSLIPFLLQTAIKGFLEIKKVDILWKDLPKVTKSYN---GSAGELYLRVTM--SSGN 1310
Query: 1083 QNGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQIQELLGISCTFDQAIQRLAASVKMVAKG 1142
NG W +++ C ++ LID RS P I GI + L+++ K
Sbjct: 1311 DNGTFWGRLINHCHRIMPLIDWTRSHPDNIHHFCSAFGIDAGWQHYFHNLSSATSDTGKS 1370
Query: 1143 VLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDATLFTPKRCFERAAEKCH 1202
+L +HL L+A+S++ G VG N G + ++ PF A P F +AA+
Sbjct: 1371 ILPKHLRLVANSLSASGEFVGLNAKGMARQRKHASVSSPFVQACFSNPGSSFLKAAKSGI 1430
Query: 1203 TDSLSSIVASCSWGKPVAVGTGSKFDVLWDAKEIKSNDLDGMDVYNFL 1250
D+L + + +WG + +GTG +FD+++ K + N +DVY L
Sbjct: 1431 VDNLQGNLDALAWGNCLPMGTGGQFDIIYSEKVEEIN--KSVDVYGLL 1476
>R7WAM9_AEGTA (tr|R7WAM9) DNA-directed RNA polymerase subunit A OS=Aegilops
tauschii GN=F775_23143 PE=4 SV=1
Length = 887
Score = 270 bits (691), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 147/392 (37%), Positives = 216/392 (55%), Gaps = 60/392 (15%)
Query: 867 KEILLCKVHFRNEPIDRRVILYLNDCDCGRSYCRENAAYAVKNQLRKVSLKDTAVDFIVE 926
KE+LL + RNE D+R+ILYL+ C CG ++C E A+ AV+ L++ ++D A +F V
Sbjct: 372 KEVLLTRASSRNEN-DQRIILYLSKCSCGNNFCTERASLAVQACLKRTKVEDCATEFSVH 430
Query: 927 YQQQRKRKGSEIDAGLVGHIHLDEVKLEELKINMAEVFQRCQEKLDSFNRKR-KFNQIFK 985
R R I L + +L+E+ I+M ++ Q+CQE + +K+ + Q+ K
Sbjct: 431 VYGARLRS-----------IVLFQKQLDEMNISMEDIIQKCQEAICECRKKKGQVYQVLK 479
Query: 986 RTELFFSESCVSPNFSAPCLTFIWPAGDGNDLHETTKILADTICPALLDTIIQGDPRINS 1045
R L SE DPR+
Sbjct: 480 RIVLSSSEC---------------------------------------------DPRVQE 494
Query: 1046 ANIIWVNPDTNTWVRNPSKSSNGELALDIILEKESIKQNGDAWRIVLDSCLPVLHLIDTR 1105
NIIWV P WV+N GELAL I ++K S ++GDAW +D+C+PV+ LIDT
Sbjct: 495 VNIIWVEPQATCWVQNSGTEQKGELALIITVDKASTGESGDAWGAAMDACIPVMDLIDTT 554
Query: 1106 RSIPYAIKQIQELLGISCTFDQAIQRLAASVKMVAKGVLREHLILLASSMTCGGNLVGFN 1165
RS+PY+I+Q+Q+++GIS F + Q+L+ +V MV K VL+EH+ +ASSMTC L GFN
Sbjct: 555 RSMPYSIQQVQQVIGISSAFGRVTQQLSKAVGMVTKSVLKEHMTTVASSMTCTCKLHGFN 614
Query: 1166 TGGYKALARQLNIQVPFTDATLFTPKRCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGS 1225
+ GY A + L IQ PF ATL P +CFE A+K ++D L+S+V++ SWG P +GTGS
Sbjct: 615 SYGYMATFQSLKIQAPFMKATLSRPMQCFEEGAKKVYSDQLNSVVSTYSWGIPAPIGTGS 674
Query: 1226 KFDVLWDAKEIK--SNDLDGMDVYNFLHMVKS 1255
F + W+ + + S DL G +Y FL V++
Sbjct: 675 AFKIHWNDENMSAGSGDLGGYGLYEFLTAVET 706
Score = 249 bits (636), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 161/456 (35%), Positives = 234/456 (51%), Gaps = 96/456 (21%)
Query: 253 IRSSRSGEPNFESHQVEANDLQSVVDQYLQIRGCAKPARDIETHFGVNKELSDASNKAWL 312
I SR G P F+ H+ EA+DLQ + Y+++ G A+ +D+ S + K W
Sbjct: 4 INGSRVGPPTFKEHEAEADDLQVAIADYIKLAGTARGPQDVTF-------TSQPATKQWQ 56
Query: 313 DKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLVD 372
KMKSL ISK S FS R VITGD Y +N VG+P E+A+R++ + RV +N+ LQ ++D
Sbjct: 57 QKMKSLCISKRSSFSCRGVITGDPYIPMNVVGVPDEVARRMSVQVRVTEYNIAQLQGMMD 116
Query: 373 ENLCLAYKEGVS-TYSLREGS--KGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQA 429
LCL +++ S T+SL G K LK G+ V+RRI+DGD VFINRPP+T KHS+Q
Sbjct: 117 RGLCLTHEDANSVTHSLDVGKAKKKRIMLKVGETVNRRILDGDTVFINRPPSTDKHSVQG 176
Query: 430 LVVYIHDDHTVKINPLICGPLGADFDGDCVHLF-YPQ---SLAAKAEVVELFSVEKQLLS 485
+ +H DHT+KINPLICGPLGADFDGDCVH++ P+ SLA K +S
Sbjct: 177 MYARVHSDHTIKINPLICGPLGADFDGDCVHIYILPKNDCSLALKRMSGREYS------- 229
Query: 486 SHXXXXXXXXXXXXXXXXXXXVKKGFMDRAAANQM--AMFLSLPLPQPALLKAGSGDCYW 543
R A Q+ AMF +P+ L SG W
Sbjct: 230 ----------------------------RREAYQLINAMFTGGLIPKKQL----SGGPKW 257
Query: 544 TSTQILQCALPLSFDCTGGRYLIRESDILGFDLGRDVLPAVINEIAASVFFGKGPQEALN 603
+ QIL+ LP E+ + L RD++ + +SV P+EA+
Sbjct: 258 SFAQILETLLP------------EENGM----LVRDLVTGTVT--ISSVLSTMSPKEAVE 299
Query: 604 FFDVLQPFLMECIFSNGFSVGLHDFSISGAVKRITDRNIGKVSPLLYQLRFIYNELVAQQ 663
F ++LQP LME + ++GFS+ L DF++ ++ P + Q + +
Sbjct: 300 FLNLLQPLLMESLSTDGFSINLRDFTVENSI------------PEMIQHKAL-------- 339
Query: 664 LEKHMQDIELPAIKFASKSSRLGDMIDSKSKSALDK 699
++ + P + F + SS ++D KS SA++K
Sbjct: 340 ---NLDKLRKPVVDFITSSSDTRLLVDQKSDSAMNK 372
>B9G500_ORYSJ (tr|B9G500) DNA-directed RNA polymerase OS=Oryza sativa subsp.
japonica GN=OsJ_30285 PE=3 SV=1
Length = 1384
Score = 270 bits (690), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 264/1021 (25%), Positives = 437/1021 (42%), Gaps = 148/1021 (14%)
Query: 305 DASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNM 364
D WL K + +SK S + RS++ GD +NE+GIP ++A + E+V+ +N
Sbjct: 269 DTYGTKWL---KDIILSKRSDNAFRSIMVGDPKINLNEIGIPTDLALNLVVSEQVSFYNF 325
Query: 365 ------CYLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINR 418
C L L E L L + G + +R+ +K L+ G I +R + DGD+V +NR
Sbjct: 326 ETINLKCNLHLLTKEVL-LVRRNGKLIF-VRKANK----LEIGDIAYRLLQDGDLVLVNR 379
Query: 419 PPTTHKHSLQALVV-YIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELF 477
PP+ H+HSL AL + V INPL C P DFDGDC+H + PQ+L ++ E+ L
Sbjct: 380 PPSVHQHSLIALSAKLLPIQSAVAINPLCCDPFKGDFDGDCLHGYVPQTLQSRVELDGLV 439
Query: 478 SVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKKG-FMDRAAANQMAMFLSL--PLPQPALL 534
S+ Q+L++ F+ +A Q+ + S P P+P+++
Sbjct: 440 SLSGQMLNAQDGRSLVSLTHDSLAAAHQLTSADVFLQKAEFQQLQLLCSSISPTPEPSVV 499
Query: 535 KAGSGD-CYWTSTQILQCALP----LSFDCTGGRYLIRESDILGFDLGRDVLPAVINEIA 589
K+ + WT Q+ LP +SFD + I++S++L G L + +
Sbjct: 500 KSANFQGSLWTGKQLFGMLLPSGMNISFD---QKLHIKDSEVLTCSSGSFWLQNNTSSVF 556
Query: 590 ASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHDFSISG---AVKRITDRNIGKV- 645
SV F + +AL F Q L E + G SV L DF + + K++++ +
Sbjct: 557 -SVMFKEYGSKALEFLSSTQDVLCEFLTMKGLSVSLSDFYLFSDHYSRKKLSEEIHLALD 615
Query: 646 -SPLLYQLRFIYNELVAQQLEKH---------------MQDIELPAIK------------ 677
+ +Q++ I V+ KH + LP IK
Sbjct: 616 EAEEAFQIKQILLNTVSIPNLKHYDGPDNLSNSHGQSDFTQVSLPIIKSSITGFKSVFND 675
Query: 678 -------FASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRG---RLYSKGLLEDVA 727
SK + + MI+S SK ++ K QQ +G QL R+ S+
Sbjct: 676 LLKMVLQHVSKDNSMMAMINSGSKGSVLKFVQQTACVGLQLPASTFPFRIPSELSCVSWN 735
Query: 728 SHFKLKCDYDGDGYPSAE----YGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEP 783
L C+ + Y +++ F GL+P E L+H+IS R S P
Sbjct: 736 RQKSLNCEITNNTSECMAGQNMYAVIRNSFLDGLNPLECLLHAISGRANFF--SENADVP 793
Query: 784 GTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGLKAGDNASYLFPA--GEHVGVLAA 841
GTL + LM LRD V YDGTVR+ I+QF Y G N + G VG AA
Sbjct: 794 GTLTRKLMYHLRDTYVAYDGTVRSSYGRQIVQFSYDTADGMNNDHDLEGEPGAPVGSWAA 853
Query: 842 TAMSNPAYKAV------LDASPSSNCSWELMKEILLCKVHFRNEPIDRRVILYLNDCDCG 895
++S AY A+ L+ SP N ++E+L C H + +L+L+
Sbjct: 854 CSISEAAYGALDHPVNALEDSPLMN-----LQEVLKC--HKGTKSAVHTGLLFLSKYLKK 906
Query: 896 RSYCRENAAYAVKNQLRKVSLKDTAVDFIVEYQQQRKRKGSEIDAGLVGHIHLDEVKLEE 955
Y E A+ VK+ L +V D V E
Sbjct: 907 YRYGFEYASLEVKDHLERVDFSDL-------------------------------VDTET 935
Query: 956 LKINMAEVFQRCQEKLDSFNR-KRKFNQIFKRTELFFSESCVS----PNFSAPCLTFIWP 1010
+KI + +E +D +N ++K N + + +S+ V N S C+T +
Sbjct: 936 MKIKRLRLGFIVRELIDQYNALRKKLNNMIPSVCISYSKCSVGNECVKNRSC-CVTMV-- 992
Query: 1011 AGDGNDLHETTKILADTICPALLDTIIQGDPRINSANIIWVNPDTNTWVRNPSKSSNGEL 1070
A ++ I+ + + P++L T+++G + + + EL
Sbjct: 993 AQVESNSTSQLDIIKERVIPSILATLLKGFLEFENVKV--------------ECQQDSEL 1038
Query: 1071 ALDIILEKESIKQNGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQIQELLGISCTFDQAIQ 1130
+ + + + + G W + ++C+P++ LID RS P + I GI + ++
Sbjct: 1039 VVKVGMSEHC--KTGKFWATLQNACIPIMELIDWERSRPERVYDIFCSYGIDSAWKYFVE 1096
Query: 1131 RLAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDATLFTP 1190
L ++ + + + R+HL+++A ++ G G ++ G K L+I PF++A P
Sbjct: 1097 SLRSTTDAIGRNIHRQHLLVVADCLSISGQFHGLSSQGLKQQRAWLSISSPFSEACFSRP 1156
Query: 1191 KRCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSKFDVLWDAKEIKSNDLDGMDVYNFL 1250
F AA++ D+LS + + +WGK GT F VL+ K K+ ++Y+FL
Sbjct: 1157 AYSFINAAKRDSVDNLSGALDAIAWGKEPCAGTSGPFKVLYSGKSQKTK--QNKNIYDFL 1214
Query: 1251 H 1251
H
Sbjct: 1215 H 1215
>B8BED0_ORYSI (tr|B8BED0) DNA-directed RNA polymerase OS=Oryza sativa subsp. indica
GN=OsI_32338 PE=3 SV=1
Length = 1384
Score = 268 bits (684), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 266/1021 (26%), Positives = 435/1021 (42%), Gaps = 148/1021 (14%)
Query: 305 DASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNM 364
D WL K + +SK S + RS++ GD +NE+GIP ++A + E+V+ +N
Sbjct: 269 DTYGTKWL---KDIILSKRSDNAFRSIMVGDPKINLNEIGIPTDLALNLVVSEQVSFYNF 325
Query: 365 ------CYLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINR 418
C L L E L L + G + +R+ +K L+ G I +R + DGD+V +NR
Sbjct: 326 ETINLKCNLHLLTKEVL-LVRRNGKLIF-VRKANK----LEIGDIAYRLLQDGDLVLVNR 379
Query: 419 PPTTHKHSLQALVV-YIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELF 477
PP+ H+HSL AL + V INPL C P DFDGDC+H + PQ+L ++ E+ L
Sbjct: 380 PPSVHQHSLIALSAKLLPIQSAVAINPLCCDPFKGDFDGDCLHGYVPQTLQSRVELDGLV 439
Query: 478 SVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKKG-FMDRAAANQMAMFLSL--PLPQPALL 534
S+ Q+L++ F+ +A Q+ + S P P+P+++
Sbjct: 440 SLSGQMLNAQDGRSLVSLTHDSLAAAHQLTSADVFLQKAEFQQLQLLCSSISPTPEPSVV 499
Query: 535 KAGSGD-CYWTSTQILQCALP----LSFDCTGGRYLIRESDILGFDLGRDVLPAVINEIA 589
K+ + WT Q+ LP +SFD + I++S++L G L + +
Sbjct: 500 KSANFQGSLWTGKQLFGMLLPSGMNISFD---QKLHIKDSEVLTCSSGSFWLQNNTSSVF 556
Query: 590 ASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHD---FSISGAVKRITDRNIGKV- 645
SV F + +AL F Q L E + G SV L D FS + K++++ +
Sbjct: 557 -SVMFKEYGSKALEFLSSTQDVLCEFLTMKGLSVSLSDLYLFSDHYSRKKLSEEIHLALD 615
Query: 646 -SPLLYQLRFIYNELVAQQLEKH---------------MQDIELPAIK------------ 677
+ +Q++ I V+ KH + LP IK
Sbjct: 616 EAEEAFQIKQILLNTVSIPNLKHYDGPDNLSNSHGQSDFTQVSLPIIKSSITGFKSVFND 675
Query: 678 -------FASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRG---RLYSKGLLEDVA 727
SK + + MI+S SK ++ K QQ +G QL R+ S+
Sbjct: 676 LLKMVLQHVSKDNSMMAMINSGSKGSVLKFVQQTACVGLQLPASTFPFRIPSELSCVSWN 735
Query: 728 SHFKLKCDYDGDGYPSAE----YGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEP 783
L C+ + Y +++ F GL+P E L+H+IS R S P
Sbjct: 736 RQKSLNCEITNNTSECMAGQNMYAVIRNSFLDGLNPLECLLHAISGRANFF--SENADVP 793
Query: 784 GTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGLKAGDNASYLFPA--GEHVGVLAA 841
GTL + LM LRD V YDGTVR+ I+QF Y G N + G VG AA
Sbjct: 794 GTLTRKLMYHLRDTYVAYDGTVRSSYGRQIVQFSYDTADGMNNDHDLEGEPGAPVGSWAA 853
Query: 842 TAMSNPAYKAV------LDASPSSNCSWELMKEILLCKVHFRNEPIDRRVILYLNDCDCG 895
++S AY A+ L+ SP N ++E+L C H + +L+L+
Sbjct: 854 CSISEAAYGALDHPVNALEDSPLMN-----LQEVLKC--HKGTKSAVHTGLLFLSKYLKK 906
Query: 896 RSYCRENAAYAVKNQLRKVSLKDTAVDFIVEYQQQRKRKGSEIDAGLVGHIHLDEVKLEE 955
Y E A+ VK+ L V D V E
Sbjct: 907 YRYGFEYASLEVKDHLELVDFSDL-------------------------------VDTET 935
Query: 956 LKINMAEVFQRCQEKLDSFNR-KRKFNQIFKRTELFFSESCVS----PNFSAPCLTFIWP 1010
+KI + +E +D +N ++K N + +S+ V N S C+T +
Sbjct: 936 MKIKRLRLGFIVRELIDQYNALRKKLNNTIPSVCISYSKCSVGNECVKNRSC-CITMV-- 992
Query: 1011 AGDGNDLHETTKILADTICPALLDTIIQGDPRINSANIIWVNPDTNTWVRNPSKSSNGEL 1070
A ++ I+ + + P++L T+++G + + + EL
Sbjct: 993 AQVESNSTSQLDIIKERVIPSILATLLKGFLEFENVKV--------------ECQQDSEL 1038
Query: 1071 ALDIILEKESIKQNGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQIQELLGISCTFDQAIQ 1130
+ + + + + G W + ++C+P++ LID RS P + I GI + ++
Sbjct: 1039 VVKVGMSEHC--KTGKFWATLQNACIPIMELIDWERSRPERVYDIFCSYGIDSAWKYFVE 1096
Query: 1131 RLAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDATLFTP 1190
L ++ + + V R+HL+++A ++ G G ++ G K L+I PF++A P
Sbjct: 1097 SLRSTTDAIGRNVHRQHLLVVADCLSISGQFHGLSSQGLKQQRAWLSISSPFSEACFSRP 1156
Query: 1191 KRCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSKFDVLWDAKEIKSNDLDGMDVYNFL 1250
F AA++ D+LS + + +WGK GT F VL+ K K+ ++Y+FL
Sbjct: 1157 AYSFINAAKRDSVDNLSGALDAIAWGKEPCAGTSGPFKVLYSGKSQKTK--QNKNIYDFL 1214
Query: 1251 H 1251
H
Sbjct: 1215 H 1215
>N1R5E0_AEGTA (tr|N1R5E0) Uncharacterized protein OS=Aegilops tauschii
GN=F775_00054 PE=4 SV=1
Length = 645
Score = 265 bits (676), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 171/459 (37%), Positives = 240/459 (52%), Gaps = 85/459 (18%)
Query: 1028 ICPALLDTIIQGDPRINSANIIWVNPDTNTWVRNPSKSSNGELALDIILEKESIKQNGDA 1087
+CP GDPRI A I+WV D WV++ K + ++NGDA
Sbjct: 17 LCPHACYLAEYGDPRIQDAKIMWVGSDATPWVKDTRKEA---------------RKNGDA 61
Query: 1088 WRIVLDSCLPVLHLIDTRRSIPYAIKQIQELLGISCTFDQAIQRLAASVKMVAKGVLREH 1147
WRI +D+C+PV++LIDTRRSIP+ I+Q+QELLGISC+FDQ +Q L+ ++K VAKG+L++H
Sbjct: 62 WRIAMDACIPVINLIDTRRSIPHGIQQVQELLGISCSFDQVVQCLSRTMKTVAKGILKDH 121
Query: 1148 LILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDATLFTPKRCFERAAEKCHTDSLS 1207
LIL+A+SMTC GNL GF+ GGY A R L +Q PFT++T FTP +C E+AAEKCHTDSL
Sbjct: 122 LILVANSMTCTGNLNGFHKGGYNATLRSLKVQAPFTEST-FTPVKCLEKAAEKCHTDSLG 180
Query: 1208 SIVASCSWGKPVAVGTGSKFDVLWDAKEIKSNDLDGMDVYNFLHMVKSLTNGEEENNACX 1267
+V+SCSWGK A+GTGS F +LW+ +++++ D Y FL V L ++ C
Sbjct: 181 CVVSSCSWGKNAALGTGSSFQILWNENQVRTDQE--KDAYTFLDDVDYLVEDNTMDDIC- 237
Query: 1268 XXXXXXXXXXXNADYSLSPQ--HTSGVDAVFEETFEAMNGPESNGWGSNTDRTETNSTQW 1325
LSP+ T G+ FE+ E E N W E ++T
Sbjct: 238 ----------------LSPEWDGTHGM-PTFEDNPEQQITEEGNSW-------ENDTTAN 273
Query: 1326 SAWESNKAETKDGGSQR---VHEDSWTSRDVMKDDSQ------MTNAWDGNVEQTKTISN 1376
++WE N D G+ + +D S +S ++W +T T N
Sbjct: 274 ASWEQNAIAGNDSGNAQNVDAQDDPLGSVAAKAQNSTAQHMDGTNDSWGCVAAKTCTAGN 333
Query: 1377 DWTAWGKNKSEIQDNVAEKAEGECGSSEKWKTAVIQEGSSKSNAWKSNIEQRSDEDSWTS 1436
D +WG +VA KA+ E W S NAW + + E+S
Sbjct: 334 D--SWG--------SVAAKAQTSTAQQESWGNVA---ASPSDNAWGAAPISQGHENS--- 377
Query: 1437 QKLKADVIQDSSKPSSWG--AKPKSNDSS--NW--GRNK 1469
DS +P+SW + +++DSS NW G NK
Sbjct: 378 ---------DSKQPASWDGWSSAQADDSSADNWKTGNNK 407
>B8AT49_ORYSI (tr|B8AT49) DNA-directed RNA polymerase OS=Oryza sativa subsp. indica
GN=OsI_17044 PE=3 SV=1
Length = 1598
Score = 245 bits (626), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 261/1042 (25%), Positives = 434/1042 (41%), Gaps = 178/1042 (17%)
Query: 304 SDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHN 363
+D WL K + +SK S + RS++ GD +NE+GIP +A + E+V+S+N
Sbjct: 264 TDTYGIKWL---KDIILSKRSDNAFRSIMVGDPKINLNEIGIPMGLALNLVVSEQVSSYN 320
Query: 364 M------CYLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFIN 417
C L L E L L + G + +R+ ++ L+ G I +R + DGD+V +N
Sbjct: 321 FETINLKCNLHLLTKEVL-LVRRNGNLIF-VRKANQ----LEIGDIAYRLLQDGDLVLVN 374
Query: 418 RPPTTHKHSLQALVV-YIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVEL 476
RPP+ H+HSL AL + V INPL C P DFDGDC+H + PQ L ++ E+ EL
Sbjct: 375 RPPSVHQHSLIALSAKLLSTQSAVSINPLCCDPFKGDFDGDCLHGYIPQCLQSRIELEEL 434
Query: 477 FSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKKG-FMDRAAANQMAMF---LSLPLPQPA 532
S+ QLL+ F+++A Q+ M +SL P P+
Sbjct: 435 VSLSGQLLNQQDGRSLVSLTHDSLAAAHQLTNADVFLEKAEFQQLQMLSSSISLT-PMPS 493
Query: 533 LLKA-GSGDCYWTSTQILQCALPLSFDCTGGRYL-IRESDILGFDLGRDVLPAVINEIAA 590
+ K+ S WT Q+ LP + + + L I++S++L G L + +
Sbjct: 494 VFKSTNSQGPLWTGKQLFGMLLPYGMNISFDQKLHIKDSEVLTCSSGSFWLQNNTSSL-F 552
Query: 591 SVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHD---FSISGAVKRITDR---NIGK 644
SV F + +AL F Q L E + G SV L D FS + +++++ + +
Sbjct: 553 SVMFKEYGCKALEFLSSTQDVLCEFLTMWGLSVSLSDLYLFSDHYSRRKLSEEVHLALDE 612
Query: 645 VSPLLYQLRFIYNELVAQQLEKH--------------MQDIELPAIK------------- 677
+ + N + L+ + + LP I+
Sbjct: 613 AEEAFQIKQILLNSVSIPNLKYYDGGDDRSNTDEQSGFTQVSLPIIRSSMTSFKSVFNDL 672
Query: 678 ------FASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRG---RLYSKGLLEDVAS 728
+ SK + + MI+S SK ++ K QQ +G QL R+ S+
Sbjct: 673 LKMVQQYVSKDNSMMTMINSGSKGSVLKFVQQTACVGLQLPASKFPFRIPSQLSCVSWNR 732
Query: 729 HFKLKCDYDGDGYPSA-----EYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEP 783
H L C+ DG Y +++ F GL+P E L+H+IS R S P
Sbjct: 733 HKSLNCEIT-DGTSECVGGQDMYAVIRNSFLDGLNPLECLLHAISGRANFF--SENADVP 789
Query: 784 GTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGLKAGDNASYLFPA--GEHVGVLAA 841
GTL + LM LRD V YDGTVR+ I++F Y G + + G VG AA
Sbjct: 790 GTLTRKLMYHLRDTYVAYDGTVRSSYGQQIVRFSYDTADGMYSDHDLEGEPGAPVGSWAA 849
Query: 842 TAMSNPAYKAV------LDASPSSNCSWELMKEILLCKVHFRNEPIDRRVILYLNDCDCG 895
++S AY A+ L+ SP N ++E+L C H +D +L+L+
Sbjct: 850 CSISEAAYGALDHPVNSLEDSPLMN-----LQEVLKC--HKGTNSLDHTGLLFLSKHLRK 902
Query: 896 RSYCRENAAYAVKNQLRKVSLKDTAVDFIVEY--QQQRKRKGSEIDAGLVGHIHLDEVKL 953
Y E A+ VK+ L +V D I+ Y +K KG+ + H HL +
Sbjct: 903 YRYGFEYASLEVKDHLERVDFSDMVDTVIILYGGSDMQKTKGNP----WITHFHLSQ--- 955
Query: 954 EELKINMAEVFQRCQEKLDSFNRKRK-FNQIFKRTELFFSES------------------ 994
E +KI + +E +D +N RK N + SE+
Sbjct: 956 ETMKIKRLGLEFIVREIIDQYNTLRKQLNNAIPSVSISNSETLHLKMENKSGKLGKNLGT 1015
Query: 995 ---CVSPNFSAPCLTFIWPAGDGNDLHETTKILADTICPALLDTIIQGDPRINSANIIWV 1051
CV + C + + N + + ++ + + P++L T+++G + +
Sbjct: 1016 GNECVK---NQTCCVSMVVQVEINSMSQ-LDVIKERVIPSILATLLKGFLEFKNVKV--- 1068
Query: 1052 NPDTNTWVRNPSKSSNGELALDIILEKESIKQNGDAWRIVLDSCLPVLHLIDTRRSIPYA 1111
+ EL L + + + ++G W + ++C+P++ LID RS P
Sbjct: 1069 -----------QCQEDNELVLKVGMSEHC--KSGKFWATLQNACIPIMELIDWERSRPER 1115
Query: 1112 IKQIQELLGISCTFDQAIQRLAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKA 1171
+ GI + ++ L ++ + + + R+HL+++A ++
Sbjct: 1116 VYDNFCSYGIDSAWKFFVESLRSTTDAIGRNIHRQHLLVVADCLS--------------- 1160
Query: 1172 LARQLNIQVPFTDATLFTPKRCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSKFDVLW 1231
P F AA++ D+LS + + +WGK G+ F +L+
Sbjct: 1161 -----------------RPAHSFINAAKRDSVDNLSGTLDAIAWGKEPCTGSSGPFKILY 1203
Query: 1232 DAK--EIKSNDLDGMDVYNFLH 1251
K E K N+ +Y+FLH
Sbjct: 1204 SGKSHETKQNE----HIYDFLH 1221
>B9FC30_ORYSJ (tr|B9FC30) DNA-directed RNA polymerase OS=Oryza sativa subsp.
japonica GN=OsJ_15844 PE=3 SV=1
Length = 1623
Score = 244 bits (624), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 261/1042 (25%), Positives = 435/1042 (41%), Gaps = 178/1042 (17%)
Query: 304 SDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHN 363
+D WL K + +SK S + RS++ GD +NE+GIP +A + E+V+S+N
Sbjct: 285 TDTYGTKWL---KDIILSKRSDNAFRSIMVGDPKINLNEIGIPMGLALNLVVSEQVSSYN 341
Query: 364 M------CYLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFIN 417
C L L E L L + G + +R+ ++ L+ G I +R + DGD+V +N
Sbjct: 342 FETINLKCNLHLLTKEVL-LVRRNGNLIF-VRKANQ----LEIGDIAYRLLQDGDLVLVN 395
Query: 418 RPPTTHKHSLQALVV-YIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVEL 476
RPP+ H+HSL AL + V INPL C P DFDGDC+H + PQ L ++ E+ EL
Sbjct: 396 RPPSVHQHSLIALSAKLLSTQSAVSINPLCCDPFKGDFDGDCLHGYIPQCLQSRIELEEL 455
Query: 477 FSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKKG-FMDRAAANQMAMF---LSLPLPQPA 532
+ QLL+ F+++A Q+ M +SL P P+
Sbjct: 456 VGLSGQLLNQQDGRSLVSLTHDSLAAAHQLTNADVFLEKAEFQQLQMLSSSISLT-PMPS 514
Query: 533 LLKA-GSGDCYWTSTQILQCALPLSFDCTGGRYL-IRESDILGFDLGRDVLPAVINEIAA 590
+ K+ S WT Q+ LP + + + L I++S++L G L + +
Sbjct: 515 VFKSTNSQGPLWTGKQLFGMLLPYGMNISFDQKLHIKDSEVLTCSSGSFWLQNNTSSL-F 573
Query: 591 SVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHD---FSISGAVKRITDR---NIGK 644
SV F + +AL F Q L E + G SV L D FS + +++++ + +
Sbjct: 574 SVMFKEYGCKALEFLSSTQDVLCEFLTMWGLSVSLSDLYLFSDHYSRRKLSEEVHLALDE 633
Query: 645 VSPLLYQLRFIYNELVAQQLEKH--------------MQDIELPAIK------------- 677
+ + N + L+ + + LP I+
Sbjct: 634 AEEAFQIKQILLNSVSIPNLKYYDGGDDRSNTDEQSGFTQVSLPIIRSSMTSFKSVFNDL 693
Query: 678 ------FASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRG---RLYSKGLLEDVAS 728
+ SK + + MI+S SK ++ K QQ +G QL R+ S+
Sbjct: 694 LKMVQQYVSKDNSMMTMINSGSKGSVLKFVQQTACVGLQLPASKFPFRIPSQLSCVSWNR 753
Query: 729 HFKLKCDYDGDGYPSA-----EYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEP 783
H L C+ DG Y +++ F GL+P E L+H+IS R S P
Sbjct: 754 HKSLNCEIT-DGTSECVGGQDMYAVVRNSFLDGLNPLECLLHAISGRANFF--SENADVP 810
Query: 784 GTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGLKAGDNASYLFPA--GEHVGVLAA 841
GTL + LM LRD V YDGTVR+ I++F Y G + + G VG AA
Sbjct: 811 GTLTRKLMYHLRDTYVAYDGTVRSSYGQQIVRFSYDTADGMYSDHDLEGEPGAPVGSWAA 870
Query: 842 TAMSNPAYKAV------LDASPSSNCSWELMKEILLCKVHFRNEPIDRRVILYLNDCDCG 895
++S AY A+ L+ SP N ++E+L C H +D +L+L+
Sbjct: 871 CSISEAAYGALDHPVNSLEDSPLMN-----LQEVLKC--HKGTNSLDHTGLLFLSKHLRK 923
Query: 896 RSYCRENAAYAVKNQLRKVSLKDTAVDFIVEY--QQQRKRKGSEIDAGLVGHIHLDEVKL 953
Y E A+ VK+ L +V D I+ Y +K KG+ + H HL++
Sbjct: 924 YRYGFEYASLEVKDHLERVDFSDMVDTVIILYGGSDMQKTKGNP----WITHFHLNQ--- 976
Query: 954 EELKINMAEVFQRCQEKLDSFNRKRK-FNQIFKRTELFFSES------------------ 994
E +KI + +E +D +N RK N + SE+
Sbjct: 977 ETMKIKRLGLEFIVREIIDQYNTLRKQLNNAIPSVSISNSETLHLKMENKSGKLGKNLGT 1036
Query: 995 ---CVSPNFSAPCLTFIWPAGDGNDLHETTKILADTICPALLDTIIQGDPRINSANIIWV 1051
CV C+T + + N + + ++ + + P++L T+++G + +
Sbjct: 1037 GNECVKNQ--TCCVTMVVQV-EINSMSQ-LDVIKERVIPSILATLLKGFLEFKNVKV--- 1089
Query: 1052 NPDTNTWVRNPSKSSNGELALDIILEKESIKQNGDAWRIVLDSCLPVLHLIDTRRSIPYA 1111
+ EL L + + + ++G W + ++C+P++ LID RS P
Sbjct: 1090 -----------QCQEDNELVLKVGMSEHC--KSGKFWATLQNACIPIMELIDWERSRPER 1136
Query: 1112 IKQIQELLGISCTFDQAIQRLAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKA 1171
+ GI + ++ L ++ + + + R+HL+++A ++
Sbjct: 1137 VYDNFCSYGIDSAWKFFVESLRSTTDAIGRNIHRQHLLVVADCLS--------------- 1181
Query: 1172 LARQLNIQVPFTDATLFTPKRCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSKFDVLW 1231
P F AA++ D+LS + + +WGK G+ F +L+
Sbjct: 1182 -----------------RPAHSFINAAKRDSVDNLSGTLDAIAWGKEPCAGSSGPFKILY 1224
Query: 1232 DAK--EIKSNDLDGMDVYNFLH 1251
K E K N+ +Y+FLH
Sbjct: 1225 SGKSHETKQNE----HIYDFLH 1242
>A5BZZ3_VITVI (tr|A5BZZ3) DNA-directed RNA polymerase OS=Vitis vinifera
GN=VITISV_011232 PE=3 SV=1
Length = 1393
Score = 230 bits (587), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 242/969 (24%), Positives = 403/969 (41%), Gaps = 139/969 (14%)
Query: 12 GNVVGIQFGMATRQEICTXXXXXXXXXXXXXXXNPFLGLPLEYGRCESCGTSEAGKCEGH 71
G ++GI+F ++T +++ +P LG+P +C +CG + KCEGH
Sbjct: 14 GLLIGIKFDVSTEEDM--EKISVMKIDAVNEITDPKLGVPNPSCQCSTCGAKDTKKCEGH 71
Query: 72 FGYIELPVPIYHPSHVSELKKMLSLVCLNCLKMKKTKFPSSSSGLAQRLLSPCCQEPNAA 131
FG I+ P I HP ++E+ ++L+ +C C ++ ++ + ++RL S C+ A
Sbjct: 72 FGVIKFPFTILHPYFLTEVVQILNKICPGCKSTRQGQWVKGADSGSRRLRSKGCKYCAAN 131
Query: 132 ----------QVSIREVKTGDGACYLVLKVSKSKMQD---------GFWRFLDKYGYRYE 172
+VS +++ + + K+Q +W F+ K + E
Sbjct: 132 SNDWYPTMKFKVSSKDLFRKTAIIVEMNEKLPKKLQKKSFRPVLPLDYWDFIPKDPQQEE 191
Query: 173 V---DHTRALLPCEVMEMIKRFPLETKKKLAGKGYFPQDGYVIKYLPVPPNCLXXXXXXX 229
+ R L +V ++K K+ + D + + LPV PN
Sbjct: 192 NCLNPNRRVLSHAQVHYLLKDIDPGFIKEFVSR----MDSFFLNCLPVTPNNH------- 240
Query: 230 XXXXXXXXXXXTFLRKLLRKVEVIRSSRSGEP-NFESHQVEAN---DLQSVVDQY-LQIR 284
R E+ + +G+ F+ H D + ++ ++
Sbjct: 241 ------------------RVTEITHALSNGQTLIFDQHSRAYKKLVDFRGTANELSCRVL 282
Query: 285 GCAKPARDIETHFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVG 344
C K ++ + AS + L +K + + K + S R ++ GD R++E+G
Sbjct: 283 DCLKTSKASNLRSEKSTSKDSASKMSGLKWIKEVLLGKRTNHSFRMIVVGDPKLRLSEIG 342
Query: 345 IPHEIAQRITFEERVNSHNMCYLQKLVDENLCLAYKEGVSTYSLREGS----KGHTYLKP 400
IP IA+ + E +NS N + V L E TY R+G+ + +
Sbjct: 343 IPCHIAEELLISEHLNSWNW----EKVTNGCNLRLLEKGQTYVRRKGTLAPVRRMNDFQA 398
Query: 401 GQIVHRRIMDGDIVFINRPPTTHKHSLQALVVYIHD-DHTVKINPLICGPLGADFDGDCV 459
G I++R + DGDIV INRPP+ H+HS+ AL V + + V INPL C P DFDGDC+
Sbjct: 399 GDIIYRPLTDGDIVLINRPPSIHQHSVIALSVKVLPLNSVVSINPLCCSPFRGDFDGDCL 458
Query: 460 HLFYPQSLAAKAEVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKKG-FMDRAAAN 518
H + PQS+ ++ E+ EL ++ +QL++ ++ G ++
Sbjct: 459 HGYIPQSVDSRVELSELVALNRQLINRQSGRNLLSLSQDSLSAAHLVMEDGVLLNLFQMQ 518
Query: 519 QMAMFLSLPLPQPALLKAGSGDC-YWTSTQILQCALPLSFDCTGGRYLIRESDILGFDLG 577
Q+ MF L PA++KA D WT Q+ LP F+ +R SD G +
Sbjct: 519 QLEMFCPYQLQSPAIIKAPLLDTQVWTGKQLFSMLLPPGFNYVFPLNGVRISD--GELIS 576
Query: 578 RDVLPAVINEIAASVF--FGKGPQ-EALNFFDVLQPFLMECIFSNGFSVGLHDFSI---S 631
A + +I ++F K Q +AL+F Q L E + G SV L D + S
Sbjct: 577 SSDGSAWLRDIDGNLFSSLVKDCQGKALDFLYAAQEVLCEWLSMRGLSVSLSDIYLSSDS 636
Query: 632 GAVKRITDR--------------------------------NIGKVSPLLYQLRFIYNEL 659
+ K + D N V P + L +
Sbjct: 637 ISRKNMIDEVFCGLLVAEQTCHFKQLLVDSSQNFLIGSGENNQNGVVPDVQSLWYERQGS 696
Query: 660 VAQ------QLEKHMQDIELPAIKFASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFV 713
A ++ +DI+ ++A+K + L M+ + SK L K+ QQ LG Q +
Sbjct: 697 AALCQSSVCAFKQKFRDIQNLVYQYANKDNSLLAMLKAGSKGNLLKLVQQGLCLGLQHSL 756
Query: 714 RGRLYSKGLLEDVASHFKLKCD--YDGDGYPSAE----YGLLKGCFFHGLDPFEELVHSI 767
+ A+ K K D AE Y +++ F GL+P E VHS+
Sbjct: 757 VPLSFKIPHQLSCAAWNKQKVPGLIQNDTSEYAESYIPYAVVENSFLMGLNPLECFVHSV 816
Query: 768 STREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGLKAG---- 823
++R+ + L PGTL + LM +RD+ + YDGTVRN N ++QF Y ++
Sbjct: 817 TSRDSSFSDNADL--PGTLTRRLMFFMRDLYIAYDGTVRNAYGNQLVQFSYNIEHTSTPS 874
Query: 824 -----DNASYLFPAGEHVGVLAATAMSNPAYKA------VLDASPSSNCSWELMKEILLC 872
D +Y G+ VG ++A A+S AY A +L+ SP N L + L+
Sbjct: 875 DGINEDTCAYDM-GGQPVGSISACAISEAAYSALDQPISLLEPSPLLNLKNHLSRLALML 933
Query: 873 KVHFRNEPI 881
+ PI
Sbjct: 934 DCKASDWPI 942
Score = 90.1 bits (222), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 84/323 (26%), Positives = 142/323 (43%), Gaps = 21/323 (6%)
Query: 865 LMKEILLCKVHFRNEPIDRRVILYLNDCDCGRSYCRENAAYAVKNQLRKVSLKDTAVDFI 924
+++ +L C + R DR V L+L+ R + E A VKN L K+ D +
Sbjct: 1066 ILQRVLECGL--RKSTADRTVSLFLSKKLEKRKHGFEYGALEVKNHLEKLLFSDIVSTVM 1123
Query: 925 VEYQQQRKRKGSEIDAGLVGHIHLDEVKLEELKINMAEVFQRCQEKLDSFNRKRKFN--- 981
+ + Q K + V H H+ E ++ + + K +S + K N
Sbjct: 1124 IVFSPQNGSKTHF--SPWVCHFHVCEEIAKKRSLKPHSIIDALYMKCNSARAESKINLPD 1181
Query: 982 -QIFKRTELFFSESCVSPNFSAPCLTFIWPAGDGNDLHETTKILADTICPALLDTIIQGD 1040
QI + E S F C+T + + T + D + P LL +++G
Sbjct: 1182 LQITSKDCFVDMEKEDSDCF---CITVSIVNSKKSCIQLDT--VRDLVIPFLLGAVVKGL 1236
Query: 1041 PRINSANIIWV-NPDTNTWVRNPSKSSNGELALDIILEKESIKQNGDAWRIVLDSCLPVL 1099
+ +I+W NPD++ KSS+G L L + + + K+N W +++D+CL ++
Sbjct: 1237 LDVKKVDILWNDNPDSDVL-----KSSSGRLYLRVYVSGDCGKKN--FWGVLMDACLQIM 1289
Query: 1100 HLIDTRRSIPYAIKQIQELLGISCTFDQAIQRLAASVKMVAKGVLREHLILLASSMTCGG 1159
+ID RS P I I + GI + + L +++ + K VL EHL+L+AS ++ G
Sbjct: 1290 DMIDWERSHPDNIHDIFVVYGIDAGWKYFLNSLKSAISDIGKTVLPEHLLLVASCLSATG 1349
Query: 1160 NLVGFNTGGYKALARQLNIQVPF 1182
VG N G +I PF
Sbjct: 1350 EFVGLNAKGMARQKELTSISSPF 1372
>M8C5N9_AEGTA (tr|M8C5N9) DNA-directed RNA polymerase III subunit RPC1 OS=Aegilops
tauschii GN=F775_07056 PE=4 SV=1
Length = 1334
Score = 229 bits (583), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 253/1016 (24%), Positives = 413/1016 (40%), Gaps = 167/1016 (16%)
Query: 304 SDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHN 363
+D WL K +SK S + R + GD R++E+GIP ++A + E VNS+N
Sbjct: 276 TDTHGMKWL---KDAILSKRSDNAFRGTMVGDPKIRLHEIGIPVDLASNLVVSEHVNSYN 332
Query: 364 M--------CYLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVF 415
CYL L +E L + K T +R+ ++ L G VHR + DGD++
Sbjct: 333 FDNINLKCNCYL--LANEKLVI--KRSGKTIIVRKPNQ----LVIGDTVHRLLQDGDLIL 384
Query: 416 INRPPTTHKHSLQALVVYIHDDHTV-KINPLICGPLGADFDGDCVHLFYPQSLAAKAEVV 474
INRPP+ H+HSL L + +V INPL C PL DFDGDC+H + PQS+ ++ E+
Sbjct: 385 INRPPSIHQHSLIGLSAKLLPVQSVLSINPLCCAPLAGDFDGDCLHGYVPQSIQSRVELG 444
Query: 475 ELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXV-KKGFMDRAAANQMAMFLSLPL---PQ 530
EL S+ QLL++ + + + Q M L PL P
Sbjct: 445 ELVSLSHQLLNAQDGRSLVSLTHDSLAAAYLLTSSEVLLKKTEVQQFQMLLCHPLSPTPG 504
Query: 531 PALLKA-GSGDCYWTSTQILQCALPLSFDCTGGRYLIRESDILGFDLGRDVLPAVINEIA 589
PA++K+ S WT Q+ LP D+ + P N I+
Sbjct: 505 PAIMKSIHSHGPLWTGKQLFSMLLP-------------------SDMSFSIEPK--NSIS 543
Query: 590 A--SVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHD---FSISGAVKRITD----- 639
SV F + +AL Q L E + G SV L D F + +++ D
Sbjct: 544 GLFSVMFKQYGDKALELLSSAQDVLCEFLTMRGLSVSLSDIYLFPDHDSRRKLADGVNLA 603
Query: 640 --------------------------RNIGKVSPLLYQLRFIYNEL-----VAQQLEKHM 668
+ +S Q FI + L +
Sbjct: 604 LDDAEEAFRIKQILLSPDSIPILKCYDDCADLSQSYEQSNFIQSNLPIIKSSIMAFKSVF 663
Query: 669 QDIELPAIKFASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVAS 728
D++ + +K++ + M ++ SK ++ K QQ +G QL + AS
Sbjct: 664 SDLQKMVQQHTAKNNSMMMMTNAGSKGSMLKFVQQTACVGLQLPASRFPFRIPSELSCAS 723
Query: 729 HFKLKCDYDGDGYPSAE-YGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLF 787
+ K + G+ Y +++ F GL+P E L+HSIS R S PGTL
Sbjct: 724 WNRHKSEGTGECLGGQNLYAVIRNSFAGGLNPLECLLHSISGRANFF--SENADVPGTLT 781
Query: 788 KNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGLKAGDNASYLFPAGE---HVGVLAATAM 844
+ LM LRD+ V YDGTVR+ I+QF Y A D S GE VG AA ++
Sbjct: 782 RKLMYHLRDLYVAYDGTVRSSYGQQIMQFTYD-TAEDMCSDRNVEGELGAPVGSWAACSI 840
Query: 845 SNPAYKAV------LDASPSSNCSWELMKEILLCKVHFRNEPIDRRVILYLNDCDCGRSY 898
S AY A+ L+ SP N ++++L C+ +D +L+L+ Y
Sbjct: 841 SEAAYGALDHPVNSLEESPLMN-----LQDVLKCQK--GGTSMDHVGLLFLSKNLKKYRY 893
Query: 899 CRENAAYAVKNQLRKVSLKDTAVDFIVEYQ--QQRKRKGSEIDAGLVGHIHLDEVKLEEL 956
E A+ VK+ L V+ D ++ Y KGS + H HL + + +
Sbjct: 894 GLEYASLEVKDHLEPVNFSDLVDTVMILYGGCGIESTKGSP----WITHFHLSQEMMTKK 949
Query: 957 KINMAEVFQRCQEKLDSFNRKRKFNQIF-KRTELFFSESCVSPNFSAPCLTFIWPAGDGN 1015
++ + V + E+ ++ K F +++ + + C N C+T + D N
Sbjct: 950 RLGLTLVVEELTEQYNAKRDKLNFPKVYISKGKCSADHEC--GNRQTCCITVV-TQDDSN 1006
Query: 1016 DLHETTKILADTICPALLDTIIQGDPRINSANIIWVNPDTNTWVRNPSKSSNGELALDII 1075
+ + I I P LL +++G I + EL + ++
Sbjct: 1007 SMSQLDTIKKRVI-PNLLALLVKGFLEFKKVEI--------------QCQEDSELVVKVV 1051
Query: 1076 LEKESIKQNGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQIQELLGISCTFDQAIQRLAAS 1135
+ +E K + W + SC+ ++ LID RS P ++ I GI + ++ L +
Sbjct: 1052 MSEEHCK-SVKFWATLQKSCIAIMELIDWERSRPGSVYDIFCSYGIDSAWKYFVESLRSK 1110
Query: 1136 VKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDATLFTPKRCFE 1195
+ + + REHL+++A+ ++ P F
Sbjct: 1111 TDDIGRNIRREHLLVVANCLS--------------------------------RPAHTFI 1138
Query: 1196 RAAEKCHTDSLSSIVASCSWGKPVAVGTGSKFDVLWDAKEIKSNDLDGMDVYNFLH 1251
AA++ D+L V + +WGK + GT F +++ K + ++Y+FL+
Sbjct: 1139 NAAKQSSVDNLCGTVDAMAWGKEPSTGTSGPFKIIYSGK--AHAPIPNENIYDFLN 1192
>M7ZUZ1_TRIUA (tr|M7ZUZ1) DNA-directed RNA polymerase D subunit 1 OS=Triticum
urartu GN=TRIUR3_10627 PE=4 SV=1
Length = 1402
Score = 223 bits (569), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 253/1037 (24%), Positives = 412/1037 (39%), Gaps = 185/1037 (17%)
Query: 304 SDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHN 363
+D WL K +SK S + R + GD R++E+GIP ++A + E VNS+N
Sbjct: 312 TDTHGMKWL---KDAILSKRSDNAFRGTMVGDPKIRLHEIGIPVDLASNLLVSEHVNSYN 368
Query: 364 M--------CYLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVF 415
CYL L +E L + K T +R+ ++ L G VHR + DGD++
Sbjct: 369 FDSINSKCNCYL--LANEKLVI--KRSGKTIIVRKPNQ----LVIGDTVHRLLQDGDLIL 420
Query: 416 INRPPTTHKHSLQALVVYIHDDHTV-KINPLICGPLGADFDGDCVHLFYPQSLAAKAEVV 474
INRPP+ H+HS+ L + +V INPL C PL DFDGDC+H + PQS+ ++ E+
Sbjct: 421 INRPPSIHQHSVIGLSAKLLPVQSVLSINPLCCAPLAGDFDGDCLHGYVPQSIQSRVELE 480
Query: 475 ELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXV-KKGFMDRAAANQMAMFLSLPL---PQ 530
EL S+ QLL++ + + + Q M L PL P
Sbjct: 481 ELVSLSHQLLNAQDGRSLVSLTHDSLAAAYLLTSSEVLLKKTEVQQFQMLLCHPLSPTPG 540
Query: 531 PALLKA-GSGDCYWTSTQILQCALPLSFDCTGGRYLIRESDILGFDLGRDVLPAVINEIA 589
PA++K+ S WT Q+ LP D+ + P N I+
Sbjct: 541 PAIMKSIHSHGPLWTGKQLFSMLLP-------------------SDMSFSIEPK--NSIS 579
Query: 590 A--SVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHD---FSISGAVKRITD----- 639
SV F + +AL Q L E + G SV L D F + +++ D
Sbjct: 580 GLFSVMFKQYGDKALELLSSAQDVLCEFLTMRGLSVSLSDIYLFPDHDSRRKLADGVNLA 639
Query: 640 --------------------------RNIGKVSPLLYQLRFIYNEL-----VAQQLEKHM 668
+ +S Q FI + L +
Sbjct: 640 LDDAEEAFRIKQILLSPDSISILKCYDDCADLSQSYEQSNFIQSNLPIIKSSIMAFKSVF 699
Query: 669 QDIELPAIKFASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVAS 728
D++ + +K++ + M ++ SK ++ K QQ +G QL + AS
Sbjct: 700 SDLQKMVQQHTAKNNSMMMMTNAGSKGSMLKFVQQTACVGLQLPASRFPFRIPSELSCAS 759
Query: 729 HFKLKCDYDGDGYPSAE-YGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLF 787
+ K + G+ Y +++ F GL+P E L+HSIS R S PGTL
Sbjct: 760 WNRHKSEGTGECLGGQNLYAVIRNSFAGGLNPLECLLHSISGRANFF--SENADVPGTLT 817
Query: 788 KNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGLKAGDNASYLFPAGE---HVGVLAATAM 844
+ LM LRD+ V YDGTVR+ I+QF Y A D S GE VG AA ++
Sbjct: 818 RKLMYHLRDLYVAYDGTVRSSYGQQIMQFTYD-TAEDMCSDRNVEGELGAPVGSWAACSI 876
Query: 845 SNPAYKAV------LDASPSSNCSWELMKEILLCKVHFRNEPIDRRVILYLNDCDCGRSY 898
S AY A+ L+ SP N ++++L C+ +D +L+L+ Y
Sbjct: 877 SEAAYGALDHPVNSLEESPLMN-----LQDVLKCQKG--GTSMDHVGLLFLSKNLKKYRY 929
Query: 899 CRENAAYAVKNQLRKVSLKDTAVDFIVEYQ--QQRKRKGSEIDAGLVGHIHLDEVKLEEL 956
E A+ VK+ L V+ D ++ Y KGS + H HL + + +
Sbjct: 930 GLEYASLEVKDHLEPVNFSDLVDTVMILYGGCGIESTKGS----AWITHFHLSQEMMTKK 985
Query: 957 KINMAEVFQRCQEKLDSFNRKRKFNQIF---------KRTELFFSES----------CVS 997
++ + V + E+ ++ K F +++ K F C +
Sbjct: 986 RLGLTLVVEELTEQYNAKRDKLNFPKVYISKGVNTAGKMVRRLFGRGIRLGIARMSKCSA 1045
Query: 998 PNFSA---PCLTFIWPAGDGNDLHETTKILADTICPALLDTIIQGDPRINSANIIWVNPD 1054
N C + D N + + I I P LL +++G I
Sbjct: 1046 DNECGNRQTCCITVVTQDDSNSMSQLDTIKKRVI-PNLLALLVKGFLEFKKVEI------ 1098
Query: 1055 TNTWVRNPSKSSNGELALDIILEKESIKQNGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQ 1114
+ EL + +++ +E K + W + SC+ ++ LID RS P ++
Sbjct: 1099 --------QCQEDSELVVKVVMSEEHCK-SVKFWATLQKSCIAIMELIDWERSRPGSVYD 1149
Query: 1115 IQELLGISCTFDQAIQRLAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALAR 1174
I GI + ++ L + + + + REHL+++A+ ++
Sbjct: 1150 IFCSYGIDSAWKYFVESLRSKTDDIGRNIRREHLLVVANCLS------------------ 1191
Query: 1175 QLNIQVPFTDATLFTPKRCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSKFDVLWDAK 1234
P F AA++ D+L V + +WGK + GT F +++ K
Sbjct: 1192 --------------RPAHTFINAAKQSSVDNLCGTVDAMAWGKEPSTGTSGPFKIIYSGK 1237
Query: 1235 EIKSNDLDGMDVYNFLH 1251
+ ++Y+FL+
Sbjct: 1238 --AHAPIPNENIYDFLN 1252
>D8PLU0_SCHCM (tr|D8PLU0) DNA-directed RNA polymerase OS=Schizophyllum commune
(strain H4-8 / FGSC 9210) GN=SCHCODRAFT_81059 PE=3 SV=1
Length = 1750
Score = 223 bits (568), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 213/861 (24%), Positives = 355/861 (41%), Gaps = 117/861 (13%)
Query: 45 NPFLGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKM 104
+P +G +C++CG + +C GHFG+IEL P++HP + ++KK+L +C+NC K+
Sbjct: 57 DPRMGTIDRNFKCQTCGEGMS-ECPGHFGHIELARPVFHPGFIVKVKKILECICVNCGKL 115
Query: 105 KKTKFPSSSSGLAQRLLSP---------------CCQ--EPNAAQVSIREVKTGDGACYL 147
K S + + + P C+ +P E K G G C
Sbjct: 116 KADISDPSFADRIRHVRDPKHRLAAVWAYCKGKMMCETDDPKEEGQEDHEEKKGHGGCGH 175
Query: 148 VLKVSKSKMQDGFWRFLDKYGYRYEVD-HTRALLPCEVMEMIKRFPLETKKKLAGKGYFP 206
+ V + ++G F+ + + D R ++P EV K+ + + L +
Sbjct: 176 IQPVIR---KEGLKMFVQYKKAKDDDDSEKRLIMPSEVYTTFKKMSEDDLRLLGLSEEYA 232
Query: 207 QDGYVIKYLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVE----VIRSSRSGEPN 262
+ ++I + P T+ KL+ ++ V R + G P
Sbjct: 233 RPEWMILTVLPVPPPPVRPSIAMDGGAQKSEDDLTY--KLIEIIKASGNVRRCEQEGAPA 290
Query: 263 FESHQVEANDLQSVVDQYLQ---------IRGCAKPARDIETHFGVNKELSDASNKAWLD 313
++ E LQ V Y+ ++ +P + I K
Sbjct: 291 HVVNEFE-QLLQFHVATYMDNDIAGIPQAMQKSGRPIKAIRARL-----------KGKEG 338
Query: 314 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLVDE 373
+++ + K FS+R+VITGD +++VG+P IA +TF ERV +N+ YLQ LV
Sbjct: 339 RLRGNLMGKRVDFSARTVITGDPNLELDQVGVPRSIAMNLTFPERVTPYNIDYLQTLV-- 396
Query: 374 NLCLAYKEGVSTYS--------------LREGSKGHTYLKPGQIVHRRIMDGDIVFINRP 419
+ G +TY LR + +L+ G IV R + DGD V NR
Sbjct: 397 ------RNGPTTYPGARYVVRDTGERIDLRYNKRADAFLQFGWIVERHLKDGDYVLFNRQ 450
Query: 420 PTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSV 479
P+ HK S+ + V + T ++N + P ADFDGD +++ PQS +AE+ ++ V
Sbjct: 451 PSLHKMSMMSHRVKLMPYSTFRLNLSVTPPYNADFDGDEMNMHIPQSEETRAELSQIAWV 510
Query: 480 EKQLLSSHXXXXXXXXXXXXX-XXXXXXVKKGFMDRAAANQMAMFLSL---PLPQPALLK 535
+Q+++ ++ FMD + +++ +P PA+LK
Sbjct: 511 PRQIVTPQSNKPVMGIVQDTLCGIRKFTLRDCFMDWNQVQNILLWVPSWDGSVPIPAILK 570
Query: 536 AGSGDCYWTSTQILQCALPLSFDCT-----GGR-------YLIRESDILGFDLGRDVLPA 583
WT QIL +P + GG I DI+ + + + A
Sbjct: 571 PKP---LWTGKQILSMVIPRGINIARKSEKGGSAPPADDGMFIENGDIMYGVVDKKTVGA 627
Query: 584 VINEIAASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHDFSISGA-----VKRIT 638
+ VF KGP+ F LQ + +F NGFS+G+ D +I+G + +
Sbjct: 628 SQGGLIHVVFREKGPEATRTLFTGLQQVVNYWLFHNGFSIGIGD-TIAGPDVMAKITKTI 686
Query: 639 DRNIGKVSPLL-------------YQLRFIYNELVAQQLEKHMQDIELPAIKFASKSSRL 685
D+ KV L +R + V +L K D A + +
Sbjct: 687 DQQKEKVKELTADAYWDLLKPMPGMTIRETFESKVNHELNKARDDAGKDAQDGLKDDNNV 746
Query: 686 GDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAE 745
M+ + SK + ++Q +GQQ V G+ G HF D Y
Sbjct: 747 KQMVVAGSKGSFINISQMSVCVGQQ-SVEGKRIPFGFRHRTLPHFT------KDDYSPES 799
Query: 746 YGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTV 805
G ++ + GL P E H++S RE ++ ++ +E G + + L+ L DV+VCYDGTV
Sbjct: 800 RGFVENSYLRGLTPQEFFFHAMSGREGLIDTAVKTAETGYIQRRLVKALEDVMVCYDGTV 859
Query: 806 RNVCSNSIIQFEYGLKAGDNA 826
RN + ++QF YG D A
Sbjct: 860 RNSLGD-LVQFIYGEDGMDGA 879
>M5ECE3_MALSM (tr|M5ECE3) Genomic scaffold, msy_sf_17 OS=Malassezia sympodialis
ATCC 42132 GN=MSY001_3022 PE=4 SV=1
Length = 1575
Score = 211 bits (538), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 210/860 (24%), Positives = 355/860 (41%), Gaps = 104/860 (12%)
Query: 45 NPFLGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKM 104
+P LG +C++CG +A +C GHFG+I+L P++H + ++KK+L VC++C K+
Sbjct: 58 DPRLGTIDRNYKCQTCGEGQA-ECPGHFGHIDLARPVFHVGFLGKVKKLLECVCVHCGKL 116
Query: 105 K---------KTKFPSSSSGLAQRL---------LSPCCQEPNAAQVSIREV---KTGDG 143
K K+ S+ + +R ++ C + + + + K G G
Sbjct: 117 KADPISDPVFKSLLQSTRANRKRRFQRVWEYCSKITICEADEGKDEDELGDTTQQKIGHG 176
Query: 144 ACYLVLKVSKSKMQDGF--WRFL---DKYGYRYEVDHTRALLPCEVMEMIKRFPLETKKK 198
C + + F W+ D+ R L EV ++K+ E
Sbjct: 177 GCGRFQPAIRKEALKLFSVWKQSKDEDEDSGGMAQSEKRPLPASEVHTILKKITPEDVVT 236
Query: 199 LAGKGYFPQ-DGYVIKYLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEVIRSSR 257
L F Q D V+ LPVPP + + + R +
Sbjct: 237 LGLSEDFAQPDWMVLTVLPVPPPQVRPGVTEFGSGMGQDDLTYKLADIIKASANLRRMEQ 296
Query: 258 SGEP-----------NFESHQVEANDLQSVVDQYLQIRGCAKPARDIETHFGVNKELSDA 306
G P + + ND+ + Q LQ G +P + I
Sbjct: 297 EGAPAHILNDFADLLQYHTATYMDNDIAGL-PQSLQSSG--RPVKAIRARL--------- 344
Query: 307 SNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCY 366
K +++ + K FS+R+VITGD +++VG+P IA+ +T+ ERV +N Y
Sbjct: 345 --KGKEGRLRGNLMGKRVDFSARTVITGDPNLELDQVGVPKSIARNLTYPERVTPYNRAY 402
Query: 367 LQKLV----DENLCLAY--KEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPP 420
L LV +E Y ++ L+ +G L+ G IV R + DGD V NR P
Sbjct: 403 LSDLVRNGPNEYPGARYVIRDTGERIDLKYNRRGDIALQAGWIVERHLKDGDYVLFNRQP 462
Query: 421 TTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVE 480
+ HK S+ A V + D T ++N + P ADFDGD ++L PQS A+AE+ ++ V
Sbjct: 463 SLHKMSMMAHRVKLMDYSTFRLNLSVTPPYNADFDGDEMNLHVPQSEEARAELAQIAWVP 522
Query: 481 KQLLSSHXXXXXXXXXXXXX-XXXXXXVKKGFMDRAAANQMAMFLS---LPLPQPALLKA 536
+Q++S ++ +D + M+L+ +PQP +LK
Sbjct: 523 RQIVSPQANKPVMGIVQDTLCGIRKFTLRDCLLDFDQVQNVLMWLTDWDGIVPQPCILKP 582
Query: 537 GSGDCYWTSTQILQCALPLSFDCTGG-------RYL------IRESDILGFDLGRDVLPA 583
YW+ Q+L +P + G +L I +I+ + + V+ +
Sbjct: 583 KP---YWSGKQLLSMCIPKGINVFLGDAKAAANNFLKDDGVHIENGEIMYGVINKKVVGS 639
Query: 584 VINEIAASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHDFSISGAVKRITDRNIG 643
+ +F +GP +FF +Q + + NGFS+G+ D A ++ I
Sbjct: 640 SAGGLIHIIFRERGPVVCRDFFSGVQRLVNFWLLHNGFSIGIGDTVADKATTANINQTIA 699
Query: 644 K----VSPLL-------------YQLRFIYNELVAQQLEKHMQDIELPAIKFASKSSRLG 686
K V L+ LR + V + L K D+ A + + +
Sbjct: 700 KAKADVMDLIQAARHDWLKADPGMTLRESFEANVNRILNKARDDVGSHAEQNLPDWNNVK 759
Query: 687 DMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEY 746
M+ + SK + ++Q +GQQ V G+ G HF D +
Sbjct: 760 QMVIAGSKGSFINISQMSACVGQQ-SVEGKRIPFGFRHRSLPHFT------KDDFTPESR 812
Query: 747 GLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVR 806
G ++ + GL E H+++ RE ++ ++ +E G + + L+ L DV +CYDGTVR
Sbjct: 813 GFVENSYLRGLTAHEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVTICYDGTVR 872
Query: 807 NVCSNSIIQFEYGLKAGDNA 826
N +N++I+F YG D A
Sbjct: 873 N-STNNVIEFAYGEDGIDGA 891
>B9GM05_POPTR (tr|B9GM05) Predicted protein OS=Populus trichocarpa
GN=POPTRDRAFT_547816 PE=4 SV=1
Length = 779
Score = 211 bits (537), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 130/282 (46%), Positives = 172/282 (60%), Gaps = 21/282 (7%)
Query: 1138 MVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDATLFTPKRCFERA 1197
MVAKGVL+EHLILL +SMTC G+L+GF TGGYK L+R L+IQVPFT+ATLFTP++CFE+A
Sbjct: 1 MVAKGVLKEHLILLGNSMTCAGSLIGFYTGGYKTLSRSLDIQVPFTEATLFTPRKCFEKA 60
Query: 1198 AEKCHTDSLSSIVASCSWGKPVAVGTGSKFDVLWDAKEIKSNDLDGMDVYNFLHMVKSLT 1257
AEKCHTD LSSIVASCSWGK V VGTGS+FDVLWD KE N G+D Y+FL+MV+S
Sbjct: 61 AEKCHTDYLSSIVASCSWGKHVTVGTGSRFDVLWDTKEACLNPEGGIDAYSFLNMVRSTA 120
Query: 1258 NGEEENNACXXXXXXXXXXXXNADYSLSPQHTSGVDA-VFEETFEAM----NGPESNGWG 1312
GEE AC + D++LSP+H S D FE++ E N P + WG
Sbjct: 121 GGEESVTAC-LGAEVDDLILEDEDWNLSPEHHSSSDKPTFEDSAEFQDFLGNQPAESNWG 179
Query: 1313 SNTDRTETNSTQWSA--WESNKAETKDGGSQR---VHEDSWTSRDVMKDDS---QMTNAW 1364
+ + + WSA W+ +K ++ G ++ + S + DV D + ++ ++W
Sbjct: 180 KASSLKDGS---WSAGNWDVDKNDS--AGKEKPWSLGMSSAETNDVGWDTAATRKINSSW 234
Query: 1365 DGNVEQTKTISNDWTAWGKNKSEIQDNVAEKAEGECGSSEKW 1406
N E T SN + W KSE + A K + + S W
Sbjct: 235 --NSENDVTQSNSLSGWATKKSETHNGFATKVQEKPARSNDW 274
>M0VV69_HORVD (tr|M0VV69) DNA-directed RNA polymerase OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 1056
Score = 208 bits (530), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 263/1037 (25%), Positives = 415/1037 (40%), Gaps = 140/1037 (13%)
Query: 48 LGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKMKKT 107
LGLP +CE+CG +C+GH G I+LP + +P E+ ++L+ C C K+
Sbjct: 47 LGLPNGAPQCETCGAQTVRECDGHSGVIKLPATVLNPHLFEEVVQLLNQTCPGCHTPKQN 106
Query: 108 KFPSSSSGLAQRLLSPCCQEPNAAQVSIREVKTGDGACYLVLKVSKSKMQDGFWRFLDKY 167
+ S+G + C + Q K + +SK+K+Q + F+DK
Sbjct: 107 RDSKRSNGATSQATCKYCSKDGTKQYPDVIFKALTSP---RITLSKAKVQHD-YNFMDKI 162
Query: 168 GYRYEV---------------------------------DHTRALL-PCEVMEMIKRFPL 193
EV + T+ LL P +V ++++
Sbjct: 163 SITAEVAGRVTDKSNNNGSCEVLPLDYWDFVPHHHPPQSNMTKILLSPYQVSHILEQLDP 222
Query: 194 ETKKKLAGKGYFPQDGYVIKYLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEVI 253
E + A + + + LPV PN + R ++V
Sbjct: 223 ELFSRFASR----LELIFLSCLPVTPNFHRVAELPYGFSDGPRLAYDDLTKAYKRTIDVG 278
Query: 254 RSSRSGEPNFESHQVEANDLQSVVDQYLQIRGCAKPARDIETHFGVNKELSDASNKAWLD 313
R + + ++ + S V + L++ D E+ +D WL
Sbjct: 279 RKLDDLRQHPQFSVFASSLVTSRVVECLKLSKLHSKKTDKESS-------TDTHGMKWL- 330
Query: 314 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNM------CYL 367
K +SK S + R + GD R++E+GIP ++A + E VNS+N C
Sbjct: 331 --KDAILSKRSDNAFRGTMVGDPKIRLHEIGIPVDLASNLVVSEHVNSYNFDSINSKCNH 388
Query: 368 QKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSL 427
L +E L K T +R+ ++ L G VHR + DGD++ INRPP+ H+HSL
Sbjct: 389 YLLANE--VLVIKRSGKTILVRKPNQ----LVIGDTVHRLLQDGDLILINRPPSVHQHSL 442
Query: 428 QALVVYIHDDHTV-KINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSS 486
L + +V INPL C PL DFDGDC+H + PQS+ ++ E+ EL S+ QLL++
Sbjct: 443 IGLSAKLLPIQSVLSINPLCCAPLAGDFDGDCLHGYVPQSIQSRVELGELVSLSHQLLNA 502
Query: 487 HXXXXXXXXXXXXXXXXXXXV-KKGFMDRAAANQMAMFLSL--PLPQPALLKA-GSGDCY 542
+ + + Q M L P P PA++K+ S
Sbjct: 503 QDGRSLVSLTHDSLAAAYLLTSSEVLLKKTEIQQFQMLLHPLSPTPGPAIMKSIHSHGPL 562
Query: 543 WTSTQILQCALP--LSFDCTGGRYLIRESDILGFDLGRDVLPAVINEIAASVFFGKGPQE 600
WT Q+ LP +SF ++I + ++L L I+ + + +F G
Sbjct: 563 WTGKQLFSMLLPSDMSFSIESKVHII-DGEVLACPSESFWLQNSISGLFSFMFKQYG-DT 620
Query: 601 ALNFFDVLQPFLMECIFSNGFSVGLHD---FSISGAVKRITD-RNIG------------- 643
AL Q L E + G SV L D F + +++ D N+
Sbjct: 621 ALELLSSAQDVLCEFLTMRGLSVSLSDIYLFPDHDSRRKLADGVNLALDDAEEAFRIKQI 680
Query: 644 KVSPLLYQLRFIYNELVAQQLEKHMQDI---ELPAIK-----FASKSSRLGDMI------ 689
+SP + Y++ D LP IK F S S L M+
Sbjct: 681 LLSPDSIPILKCYDDCADLSQSYEQSDFIQSNLPIIKSSIMAFKSVFSDLQKMVQQHTAR 740
Query: 690 --------DSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGY 741
++ SK ++ K QQ +G QL + AS + K + G+
Sbjct: 741 NNSMMIMTNAGSKGSMLKFVQQTACVGLQLPASRFPFRIPSELSCASWNRHKSEGRGECL 800
Query: 742 PSAE-YGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVC 800
Y +++ F GL+P E L+HSIS R S PGTL + LM LRD+ V
Sbjct: 801 GGQNLYAVIRNSFAGGLNPLECLLHSISGRANFF--SENADVPGTLTRKLMYHLRDLYVA 858
Query: 801 YDGTVRNVCSNSIIQFEYGLKAGDNASYLFPAGE---HVGVLAATAMSNPAYKAV----- 852
YDGTVR+ I+QF Y A D S GE VG AA ++S AY A+
Sbjct: 859 YDGTVRSSYGQQIMQFTYD-TAEDMCSDRNLEGELGAPVGSWAACSISEAAYGALDHPVN 917
Query: 853 -LDASPSSNCSWELMKEILLCKVHFRNEPIDRRVILYLNDCDCGRSYCRENAAYAVKNQL 911
L+ SP N ++++L C+ +D +L+L+ Y E A+ VK+ L
Sbjct: 918 SLEESPLMN-----LQDVLKCQK--GGTSMDHVGLLFLSKNLKKYRYGLEYASLEVKDYL 970
Query: 912 RKVSLKDTAVDFIVEYQQQRKRKGSEIDAGLVGHIHLDEVKLEELKINMAEVFQRCQEKL 971
V+ D +V + + KGS H HL + + ++ + V + E+
Sbjct: 971 EPVNFSDLVDTVMVLHGGCQSTKGSP----WTTHFHLSQEMMTRKRLGLRLVVEELTEQ- 1025
Query: 972 DSFNRKR-KFNQIFKRT 987
+N KR K N + +
Sbjct: 1026 --YNAKRDKLNDVIPKV 1040
>M0VV71_HORVD (tr|M0VV71) DNA-directed RNA polymerase OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 1045
Score = 208 bits (529), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 263/1037 (25%), Positives = 415/1037 (40%), Gaps = 140/1037 (13%)
Query: 48 LGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKMKKT 107
LGLP +CE+CG +C+GH G I+LP + +P E+ ++L+ C C K+
Sbjct: 47 LGLPNGAPQCETCGAQTVRECDGHSGVIKLPATVLNPHLFEEVVQLLNQTCPGCHTPKQN 106
Query: 108 KFPSSSSGLAQRLLSPCCQEPNAAQVSIREVKTGDGACYLVLKVSKSKMQDGFWRFLDKY 167
+ S+G + C + Q K + +SK+K+Q + F+DK
Sbjct: 107 RDSKRSNGATSQATCKYCSKDGTKQYPDVIFKALTSP---RITLSKAKVQHD-YNFMDKI 162
Query: 168 GYRYEV---------------------------------DHTRALL-PCEVMEMIKRFPL 193
EV + T+ LL P +V ++++
Sbjct: 163 SITAEVAGRVTDKSNNNGSCEVLPLDYWDFVPHHHPPQSNMTKILLSPYQVSHILEQLDP 222
Query: 194 ETKKKLAGKGYFPQDGYVIKYLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEVI 253
E + A + + + LPV PN + R ++V
Sbjct: 223 ELFSRFASR----LELIFLSCLPVTPNFHRVAELPYGFSDGPRLAYDDLTKAYKRTIDVG 278
Query: 254 RSSRSGEPNFESHQVEANDLQSVVDQYLQIRGCAKPARDIETHFGVNKELSDASNKAWLD 313
R + + ++ + S V + L++ D E+ +D WL
Sbjct: 279 RKLDDLRQHPQFSVFASSLVTSRVVECLKLSKLHSKKTDKESS-------TDTHGMKWL- 330
Query: 314 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNM------CYL 367
K +SK S + R + GD R++E+GIP ++A + E VNS+N C
Sbjct: 331 --KDAILSKRSDNAFRGTMVGDPKIRLHEIGIPVDLASNLVVSEHVNSYNFDSINSKCNH 388
Query: 368 QKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSL 427
L +E L K T +R+ ++ L G VHR + DGD++ INRPP+ H+HSL
Sbjct: 389 YLLANE--VLVIKRSGKTILVRKPNQ----LVIGDTVHRLLQDGDLILINRPPSVHQHSL 442
Query: 428 QALVVYIHDDHTV-KINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSS 486
L + +V INPL C PL DFDGDC+H + PQS+ ++ E+ EL S+ QLL++
Sbjct: 443 IGLSAKLLPIQSVLSINPLCCAPLAGDFDGDCLHGYVPQSIQSRVELGELVSLSHQLLNA 502
Query: 487 HXXXXXXXXXXXXXXXXXXXV-KKGFMDRAAANQMAMFLSL--PLPQPALLKA-GSGDCY 542
+ + + Q M L P P PA++K+ S
Sbjct: 503 QDGRSLVSLTHDSLAAAYLLTSSEVLLKKTEIQQFQMLLHPLSPTPGPAIMKSIHSHGPL 562
Query: 543 WTSTQILQCALP--LSFDCTGGRYLIRESDILGFDLGRDVLPAVINEIAASVFFGKGPQE 600
WT Q+ LP +SF ++I + ++L L I+ + + +F G
Sbjct: 563 WTGKQLFSMLLPSDMSFSIESKVHII-DGEVLACPSESFWLQNSISGLFSFMFKQYG-DT 620
Query: 601 ALNFFDVLQPFLMECIFSNGFSVGLHD---FSISGAVKRITD-RNIG------------- 643
AL Q L E + G SV L D F + +++ D N+
Sbjct: 621 ALELLSSAQDVLCEFLTMRGLSVSLSDIYLFPDHDSRRKLADGVNLALDDAEEAFRIKQI 680
Query: 644 KVSPLLYQLRFIYNELVAQQLEKHMQDI---ELPAIK-----FASKSSRLGDMI------ 689
+SP + Y++ D LP IK F S S L M+
Sbjct: 681 LLSPDSIPILKCYDDCADLSQSYEQSDFIQSNLPIIKSSIMAFKSVFSDLQKMVQQHTAR 740
Query: 690 --------DSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGY 741
++ SK ++ K QQ +G QL + AS + K + G+
Sbjct: 741 NNSMMIMTNAGSKGSMLKFVQQTACVGLQLPASRFPFRIPSELSCASWNRHKSEGRGECL 800
Query: 742 PSAE-YGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVC 800
Y +++ F GL+P E L+HSIS R S PGTL + LM LRD+ V
Sbjct: 801 GGQNLYAVIRNSFAGGLNPLECLLHSISGRANFF--SENADVPGTLTRKLMYHLRDLYVA 858
Query: 801 YDGTVRNVCSNSIIQFEYGLKAGDNASYLFPAGE---HVGVLAATAMSNPAYKAV----- 852
YDGTVR+ I+QF Y A D S GE VG AA ++S AY A+
Sbjct: 859 YDGTVRSSYGQQIMQFTYD-TAEDMCSDRNLEGELGAPVGSWAACSISEAAYGALDHPVN 917
Query: 853 -LDASPSSNCSWELMKEILLCKVHFRNEPIDRRVILYLNDCDCGRSYCRENAAYAVKNQL 911
L+ SP N ++++L C+ +D +L+L+ Y E A+ VK+ L
Sbjct: 918 SLEESPLMN-----LQDVLKCQK--GGTSMDHVGLLFLSKNLKKYRYGLEYASLEVKDYL 970
Query: 912 RKVSLKDTAVDFIVEYQQQRKRKGSEIDAGLVGHIHLDEVKLEELKINMAEVFQRCQEKL 971
V+ D +V + + KGS H HL + + ++ + V + E+
Sbjct: 971 EPVNFSDLVDTVMVLHGGCQSTKGSP----WTTHFHLSQEMMTRKRLGLRLVVEELTEQ- 1025
Query: 972 DSFNRKR-KFNQIFKRT 987
+N KR K N + +
Sbjct: 1026 --YNAKRDKLNDVIPKV 1040
>J9VSQ4_CRYNH (tr|J9VSQ4) DNA-directed RNA polymerase OS=Cryptococcus neoformans
var. grubii serotype A (strain H99 / ATCC 208821 / CBS
10515 / FGSC 9487) GN=CNAG_02166 PE=3 SV=1
Length = 1786
Score = 206 bits (523), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 225/897 (25%), Positives = 367/897 (40%), Gaps = 106/897 (11%)
Query: 17 IQFGMATRQEI---------CTXXXXXXXXXXXXXXXNPFLGLPLEYGRCESC--GTSEA 65
IQFG+ + +EI T +P +G +C++C G SE
Sbjct: 18 IQFGIMSPEEIKAFSVAKIESTEVLDENGKQKVGGLMDPKMGTIDRNFKCQTCLEGMSE- 76
Query: 66 GKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKMK-KTKFPSSSSGL----AQRL 120
C GHFG+IEL P++H + ++KK+L VC +C K+K + P ++ + AQ
Sbjct: 77 --CPGHFGHIELARPVFHQGFIVKVKKILECVCYSCGKLKVDMRDPMVANAVRRIKAQHR 134
Query: 121 LSPCCQ--------EPNAAQVS-----------IREVKT---GDGACYLVLKVSKSKMQD 158
L EP+ ++E K G G C V + K
Sbjct: 135 LKAIWALAKDKKICEPDELDEKDNGDATFEDEYLQEQKAALKGHGGCGHEQPVWRKKGLK 194
Query: 159 --GFWRFLDKYGYRYEVDHTRALLPCEVMEMIKRFPLETKKKLA-GKGYFPQDGYVIKYL 215
G W+ DK R + P EV ++K+ E + Y D ++ L
Sbjct: 195 LMGVWKPTDKGEDEAAEPEERNVSPGEVYNILKKITPEDLHIMGLNADYARPDWMILTVL 254
Query: 216 PVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEVIR--SSRSGEPNFESHQVEANDL 273
PVPP + L ++++ V+R + P+ + Q + L
Sbjct: 255 PVPPAAVRPSIAVDGGAMRSEDDLTYKLSQIIKFNGVVRRMEAEGVPPSVVNEQFDL--L 312
Query: 274 QSVVDQYLQIRGCAKPARDIETHFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVIT 333
Q V Y+ P RD + K + A K +M+ + K FS+R+VIT
Sbjct: 313 QYHVCTYMDNDIAGLP-RDQQKGGRAIKAIR-ARLKGKEGRMRGNLMGKRVDFSARTVIT 370
Query: 334 GDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLVDENLCLAYKEGVSTYSLREGSK 393
GD ++++VG+P IA +T+ ERV +N+ YLQ LV N A G Y G +
Sbjct: 371 GDPNLQLDQVGVPKSIAMTLTYPERVTPYNIVYLQTLV--NNGPATYPGARYYVKDTGER 428
Query: 394 -GHTYLKPGQ--------IVHRRIMDGDIVFINRPPTTHKHSLQALVVYIHDDHTVKINP 444
Y K G+ IV R + DGD V NR P+ HK S+ + V + + T ++N
Sbjct: 429 VDLKYRKSGEPISLQFGWIVERHLKDGDYVLFNRQPSLHKMSMMSHRVKLMNYSTFRLNL 488
Query: 445 LICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHXXXXXXXXXXXXX-XXX 503
+ P ADFDGD ++L PQS +AE+ ++ V +Q++S
Sbjct: 489 SVTSPYNADFDGDEMNLHVPQSEETRAELSQIAWVPRQIVSPQANKPVMGIVQDTLCGIR 548
Query: 504 XXXVKKGFMDRAAANQMAMFL---SLPLPQPALLKAGSGDCYWTSTQILQCALPLS---- 556
++ F+D + ++L + +P PA+ K WT Q+L +P
Sbjct: 549 KFTLRDNFLDWLQVQHILLWLPEWNGTIPPPAIFKP---KPMWTGKQLLSMTIPKGINIT 605
Query: 557 ---------FDCTGGRYLIRESDILGFDLGRDVLPAVINEIAASVFFGKGPQEALNFFDV 607
D T LI +++ + +++ + N + +F G A +FF
Sbjct: 606 YKNNEKPSPIDVTDENVLIENGELVHGTIVKNMAGSANNGLVHVIFRELGHIAARDFFSA 665
Query: 608 LQPFLMECIFSNGFSVGLHDFSISGA-VKRITDRNI---GKVSPLLYQ------------ 651
+Q + + GFSVG+ D + A + IT+R + V L+ +
Sbjct: 666 VQRVVNYWLLHYGFSVGIGDTIVDKATMAGITNRMVEAKEAVQKLIQEAEANRMKPKPGM 725
Query: 652 -LRFIYNELVAQQLEKHMQDIELPAIKFASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQ 710
+R +A +L K + + M+ S +K + ++Q G +GQQ
Sbjct: 726 TIRETLEASIAAELNKARDWTGKTTQDNLKADNNVKQMVVSGAKGSFINISQMSGVVGQQ 785
Query: 711 LFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTR 770
FV G+ S G HF D Y G ++ + GL P E H++ R
Sbjct: 786 -FVEGKRISFGFRHRSLPHFSR------DDYGPESRGFVENSYLRGLTPQEFWFHAMGGR 838
Query: 771 EIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGLKAGDNAS 827
E ++ ++ +E G + + L+ + D+ V YDGTVRN N ++QF YG D A+
Sbjct: 839 EGLIDTAVKTAETGYIQRRLVKAMEDLKVAYDGTVRNSV-NEVVQFLYGEDGMDGAA 894
>Q5KGG3_CRYNJ (tr|Q5KGG3) DNA-directed RNA polymerase OS=Cryptococcus neoformans
var. neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=CNE03720 PE=3 SV=1
Length = 1786
Score = 205 bits (522), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 225/897 (25%), Positives = 366/897 (40%), Gaps = 106/897 (11%)
Query: 17 IQFGMATRQEI---------CTXXXXXXXXXXXXXXXNPFLGLPLEYGRCESC--GTSEA 65
IQFG+ + +EI T +P +G +C++C G SE
Sbjct: 18 IQFGIMSPEEIKAFSVAKIESTEVLDENGKQKVGGLMDPKMGTIDRNFKCQTCLEGMSE- 76
Query: 66 GKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKMK-KTKFPSSSSGL----AQRL 120
C GHFG+IEL P++H + ++KK+L VC +C K+K + P ++ + AQ
Sbjct: 77 --CPGHFGHIELARPVFHQGFIVKVKKILECVCYSCGKLKVDMRDPMVANAVRRIKAQHR 134
Query: 121 LSPCCQ--------EPNAAQVS-----------IREVKT---GDGACYLVLKVSKSKMQD 158
L EP+ ++E K G G C V + K
Sbjct: 135 LKAIWALAKDKKHCEPDELDEKDNGDATFEDEYLQEQKAAMKGHGGCGHEQPVWRKKGLK 194
Query: 159 --GFWRFLDKYGYRYEVDHTRALLPCEVMEMIKRFPLETKKKLA-GKGYFPQDGYVIKYL 215
G W+ DK R + P EV ++K+ E + Y D ++ L
Sbjct: 195 LMGVWKPTDKGEDEAAEPEERNISPGEVYNILKKITPEDLHIMGLNADYARPDWMILTVL 254
Query: 216 PVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEVIR--SSRSGEPNFESHQVEANDL 273
PVPP + L ++++ V+R + P+ + Q + L
Sbjct: 255 PVPPAAVRPSIAVDGGAMRSEDDLTYKLSQIIKFNGVVRRMEAEGVPPSVVNEQFDL--L 312
Query: 274 QSVVDQYLQIRGCAKPARDIETHFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVIT 333
Q V Y+ P RD + K + A K +M+ + K FS+R+VIT
Sbjct: 313 QYHVCTYMDNDIAGLP-RDQQKGGRAIKAIR-ARLKGKEGRMRGNLMGKRVDFSARTVIT 370
Query: 334 GDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLVDENLCLAYKEGVSTYSLREGSK 393
GD ++++VG+P IA +T+ ERV +N+ YLQ LV N A G Y G +
Sbjct: 371 GDPNLQLDQVGVPKSIAMTLTYPERVTPYNIVYLQTLV--NNGPATYPGARYYVKDTGER 428
Query: 394 -GHTYLKPGQ--------IVHRRIMDGDIVFINRPPTTHKHSLQALVVYIHDDHTVKINP 444
Y K G+ IV R + DGD V NR P+ HK S+ + V + + T ++N
Sbjct: 429 VDLKYRKSGEPISLQFGWIVERHLKDGDYVLFNRQPSLHKMSMMSHRVKLMNYSTFRLNL 488
Query: 445 LICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHXXXXXXXXXXXXX-XXX 503
+ P ADFDGD ++L PQS +AE+ ++ V +Q++S
Sbjct: 489 SVTSPYNADFDGDEMNLHVPQSEETRAELSQIAWVPRQIVSPQANKPVMGIVQDTLCGIR 548
Query: 504 XXXVKKGFMDRAAANQMAMFLSL---PLPQPALLKAGSGDCYWTSTQILQCALPLS---- 556
++ F+D + ++L +P PA+ K WT Q+L +P
Sbjct: 549 KFTLRDNFLDWLQVQHILLWLPEWDGTIPPPAIFKP---KPMWTGKQLLSMTIPKGINIT 605
Query: 557 ---------FDCTGGRYLIRESDILGFDLGRDVLPAVINEIAASVFFGKGPQEALNFFDV 607
D T LI +++ + +++ + N + +F G A +FF
Sbjct: 606 YKNNEKPSPIDVTDENVLIENGELVHGTIVKNMAGSANNGLVHVIFRELGHIAARDFFSA 665
Query: 608 LQPFLMECIFSNGFSVGLHDFSISGA-VKRITDRNI---GKVSPLLYQ------------ 651
+Q + + GFSVG+ D + A + IT+R + V L+ +
Sbjct: 666 VQRVVNYWLLHFGFSVGIGDTIVDKATMAGITNRMVEAKEAVQKLIQEAEANRMKPKPGM 725
Query: 652 -LRFIYNELVAQQLEKHMQDIELPAIKFASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQ 710
+R +A +L K + + M+ S +K + ++Q G +GQQ
Sbjct: 726 TIRETLEASIAAELNKARDWTGKTTQDNLKADNNVKQMVVSGAKGSFINISQMSGVVGQQ 785
Query: 711 LFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTR 770
FV G+ S G HF D Y G ++ + GL P E H++ R
Sbjct: 786 -FVEGKRISFGFRHRSLPHFSR------DDYGPESRGFVENSYLRGLTPQEFWFHAMGGR 838
Query: 771 EIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGLKAGDNAS 827
E ++ ++ +E G + + L+ + D+ V YDGTVRN N ++QF YG D A+
Sbjct: 839 EGLIDTAVKTAETGYIQRRLVKAMEDLKVAYDGTVRNSV-NEVVQFLYGEDGMDGAA 894
>F5HIN3_CRYNB (tr|F5HIN3) DNA-directed RNA polymerase OS=Cryptococcus neoformans
var. neoformans serotype D (strain B-3501A) GN=CNBE3710
PE=3 SV=1
Length = 1786
Score = 205 bits (522), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 225/897 (25%), Positives = 366/897 (40%), Gaps = 106/897 (11%)
Query: 17 IQFGMATRQEI---------CTXXXXXXXXXXXXXXXNPFLGLPLEYGRCESC--GTSEA 65
IQFG+ + +EI T +P +G +C++C G SE
Sbjct: 18 IQFGIMSPEEIKAFSVAKIESTEVLDENGKQKVGGLMDPKMGTIDRNFKCQTCLEGMSE- 76
Query: 66 GKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKMK-KTKFPSSSSGL----AQRL 120
C GHFG+IEL P++H + ++KK+L VC +C K+K + P ++ + AQ
Sbjct: 77 --CPGHFGHIELARPVFHQGFIVKVKKILECVCYSCGKLKVDMRDPMVANAVRRIKAQHR 134
Query: 121 LSPCCQ--------EPNAAQVS-----------IREVKT---GDGACYLVLKVSKSKMQD 158
L EP+ ++E K G G C V + K
Sbjct: 135 LKAIWALAKDKKHCEPDELDEKDNGDATFEDEYLQEQKAAMKGHGGCGHEQPVWRKKGLK 194
Query: 159 --GFWRFLDKYGYRYEVDHTRALLPCEVMEMIKRFPLETKKKLA-GKGYFPQDGYVIKYL 215
G W+ DK R + P EV ++K+ E + Y D ++ L
Sbjct: 195 LMGVWKPTDKGEDEAAEPEERNISPGEVYNILKKITPEDLHIMGLNADYARPDWMILTVL 254
Query: 216 PVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEVIR--SSRSGEPNFESHQVEANDL 273
PVPP + L ++++ V+R + P+ + Q + L
Sbjct: 255 PVPPAAVRPSIAVDGGAMRSEDDLTYKLSQIIKFNGVVRRMEAEGVPPSVVNEQFDL--L 312
Query: 274 QSVVDQYLQIRGCAKPARDIETHFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVIT 333
Q V Y+ P RD + K + A K +M+ + K FS+R+VIT
Sbjct: 313 QYHVCTYMDNDIAGLP-RDQQKGGRAIKAIR-ARLKGKEGRMRGNLMGKRVDFSARTVIT 370
Query: 334 GDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLVDENLCLAYKEGVSTYSLREGSK 393
GD ++++VG+P IA +T+ ERV +N+ YLQ LV N A G Y G +
Sbjct: 371 GDPNLQLDQVGVPKSIAMTLTYPERVTPYNIVYLQTLV--NNGPATYPGARYYVKDTGER 428
Query: 394 -GHTYLKPGQ--------IVHRRIMDGDIVFINRPPTTHKHSLQALVVYIHDDHTVKINP 444
Y K G+ IV R + DGD V NR P+ HK S+ + V + + T ++N
Sbjct: 429 VDLKYRKSGEPISLQFGWIVERHLKDGDYVLFNRQPSLHKMSMMSHRVKLMNYSTFRLNL 488
Query: 445 LICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHXXXXXXXXXXXXX-XXX 503
+ P ADFDGD ++L PQS +AE+ ++ V +Q++S
Sbjct: 489 SVTSPYNADFDGDEMNLHVPQSEETRAELSQIAWVPRQIVSPQANKPVMGIVQDTLCGIR 548
Query: 504 XXXVKKGFMDRAAANQMAMFLSL---PLPQPALLKAGSGDCYWTSTQILQCALPLS---- 556
++ F+D + ++L +P PA+ K WT Q+L +P
Sbjct: 549 KFTLRDNFLDWLQVQHILLWLPEWDGTIPPPAIFKP---KPMWTGKQLLSMTIPKGINIT 605
Query: 557 ---------FDCTGGRYLIRESDILGFDLGRDVLPAVINEIAASVFFGKGPQEALNFFDV 607
D T LI +++ + +++ + N + +F G A +FF
Sbjct: 606 YKNNEKPSPIDVTDENVLIENGELVHGTIVKNMAGSANNGLVHVIFRELGHIAARDFFSA 665
Query: 608 LQPFLMECIFSNGFSVGLHDFSISGA-VKRITDRNI---GKVSPLLYQ------------ 651
+Q + + GFSVG+ D + A + IT+R + V L+ +
Sbjct: 666 VQRVVNYWLLHFGFSVGIGDTIVDKATMAGITNRMVEAKEAVQKLIQEAEANRMKPKPGM 725
Query: 652 -LRFIYNELVAQQLEKHMQDIELPAIKFASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQ 710
+R +A +L K + + M+ S +K + ++Q G +GQQ
Sbjct: 726 TIRETLEASIAAELNKARDWTGKTTQDNLKADNNVKQMVVSGAKGSFINISQMSGVVGQQ 785
Query: 711 LFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTR 770
FV G+ S G HF D Y G ++ + GL P E H++ R
Sbjct: 786 -FVEGKRISFGFRHRSLPHFSR------DDYGPESRGFVENSYLRGLTPQEFWFHAMGGR 838
Query: 771 EIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGLKAGDNAS 827
E ++ ++ +E G + + L+ + D+ V YDGTVRN N ++QF YG D A+
Sbjct: 839 EGLIDTAVKTAETGYIQRRLVKAMEDLKVAYDGTVRNSV-NEVVQFLYGEDGMDGAA 894
>E6R7B9_CRYGW (tr|E6R7B9) DNA-directed RNA polymerase OS=Cryptococcus gattii
serotype B (strain WM276 / ATCC MYA-4071) GN=CGB_E5020W
PE=3 SV=1
Length = 1786
Score = 204 bits (520), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 225/898 (25%), Positives = 365/898 (40%), Gaps = 108/898 (12%)
Query: 17 IQFGMATRQEI---------CTXXXXXXXXXXXXXXXNPFLGLPLEYGRCESC--GTSEA 65
IQFG+ + +EI T +P +G +C++C G SE
Sbjct: 18 IQFGIMSPEEIKAFSVAKIESTEVLDENGKQKVGGLMDPKMGTIDRNFKCQTCLEGMSE- 76
Query: 66 GKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKMK-KTKFPSSSSGL----AQRL 120
C GHFG+IEL P++H + ++KK+L VC +C K+K + P ++ + AQ
Sbjct: 77 --CPGHFGHIELARPVFHQGFIVKVKKILECVCYSCGKLKVDMRDPMVANAVRRIKAQHR 134
Query: 121 LSPCCQ--------EPNAAQVS-----------IREVKT---GDGACYLVLKVSKSKMQD 158
L EP+ ++E K G G C V + K
Sbjct: 135 LKAIWALAKDKKICEPDELDEKDNGDATFEDEYLQEKKATMKGHGGCGHEQPVWRKKGLK 194
Query: 159 --GFWRFLDKYGYRYEVDHTRALLPCEVMEMIKRFPLETKKKLA-GKGYFPQDGYVIKYL 215
G W+ DK R + P EV ++K+ E + Y D ++ L
Sbjct: 195 LLGVWKPTDKGEDEATEPEERNVSPGEVYNILKKITPEDLHIMGLNADYARPDWMILTVL 254
Query: 216 PVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEVIR--SSRSGEPNFESHQVEANDL 273
PVPP + L ++++ V+R + P+ + Q + L
Sbjct: 255 PVPPAAVRPSIAVDGGAMRSEDDLTYKLSQIIKFNGVVRRMEAEGVPPSVVNEQFDL--L 312
Query: 274 QSVVDQYLQIRGCAKPARDIETHFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVIT 333
Q V Y+ P RD + K + A K +M+ + K FS+R+VIT
Sbjct: 313 QYHVCTYMDNDIAGLP-RDQQKGGRAIKAIR-ARLKGKEGRMRGNLMGKRVDFSARTVIT 370
Query: 334 GDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLVDENLCLAYKEGVSTYSLREGSK 393
GD ++++VG+P IA +T+ ERV +N+ YLQ LV N A G Y G +
Sbjct: 371 GDPNLQLDQVGVPKSIAMTLTYPERVTPYNIVYLQTLV--NNGPATYPGARYYVKDTGER 428
Query: 394 -GHTYLKPGQ--------IVHRRIMDGDIVFINRPPTTHKHSLQALVVYIHDDHTVKINP 444
Y K G+ IV R + DGD V NR P+ HK S+ + V + + T ++N
Sbjct: 429 VDLKYRKSGEPISLQFGWIVERHLKDGDYVLFNRQPSLHKMSMMSHRVKLMNYSTFRLNL 488
Query: 445 LICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHXXXXXXXXXXXXX-XXX 503
+ P ADFDGD ++L PQS +AE+ ++ V +Q++S
Sbjct: 489 SVTSPYNADFDGDEMNLHVPQSEETRAELSQIAWVPRQIVSPQANKPVMGIVQDTLCGIR 548
Query: 504 XXXVKKGFMDRAAANQMAMFLSL---PLPQPALLKAGSGDCYWTSTQILQCALPLS---- 556
++ F+D + ++L +P PA+ K WT Q+L +P
Sbjct: 549 KFTLRDNFLDWLQVQHILLWLPEWDGSIPPPAIFKP---KPMWTGKQLLSMTIPKGINIT 605
Query: 557 ---------FDCTGGRYLIRESDILGFDLGRDVLPAVINEIAASVFFGKGPQEALNFFDV 607
D T LI +++ + +++ + N + +F G A +FF
Sbjct: 606 YKNNEKPSPIDVTDENVLIENGELVHGTIVKNMAGSANNGLVHVIFRELGHVAARDFFSA 665
Query: 608 LQPFLMECIFSNGFSVGLHDFSISGA-VKRITDR-----------------NIGKVSPLL 649
+Q + + GFSVG+ D + A + IT+R N K P +
Sbjct: 666 VQRVVNYWLLHYGFSVGIGDTIVDKATMAGITNRMVEAKEAVQKLVQEAEANRMKPKPGM 725
Query: 650 YQLRFIYNELVAQQLEKHMQDIELPAIKFASKSSRLGDMIDSKSKSALDKVTQQIGFLGQ 709
+R +A +L K + + M+ S +K + ++Q G +GQ
Sbjct: 726 -TIRETLEASIAAELNKARDWTGKTTQDNLKADNNVKQMVVSGAKGSFINISQMSGVVGQ 784
Query: 710 QLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSIST 769
Q FV G+ + G HF D Y G ++ + GL P E H++
Sbjct: 785 Q-FVEGKRIAFGFRHRSLPHFS------KDDYGPESRGFVENSYLRGLTPQEFWFHAMGG 837
Query: 770 REIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGLKAGDNAS 827
RE ++ ++ +E G + + L+ + D+ V YDGTVRN N ++QF YG D A+
Sbjct: 838 REGLIDTAVKTAETGYIQRRLVKAMEDLKVAYDGTVRNSV-NEVVQFLYGEDGMDGAA 894
>M3B0A6_9PEZI (tr|M3B0A6) DNA-directed RNA polymerase OS=Pseudocercospora
fijiensis CIRAD86 GN=MYCFIDRAFT_58269 PE=3 SV=1
Length = 1753
Score = 204 bits (520), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 214/869 (24%), Positives = 364/869 (41%), Gaps = 115/869 (13%)
Query: 45 NPFLGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKM 104
+P LG C +CG S+ +C GHFG+IEL VP++H ++++KK+L VC NC K+
Sbjct: 55 DPKLGTIDRSQMCATCGESQQ-ECPGHFGHIELAVPVFHVGFITKIKKILESVCHNCGKL 113
Query: 105 KK------------TKFPSSSSGLAQRLLSP--CC--------QEPNAAQVSIREVKTGD 142
+ + P RL P C ++ + +E + G
Sbjct: 114 LEDESNPLFKRAVGLRDPKRRFEAVTRLCKPKMTCDLDAKNDDEQEDFGSNPKKEKRPGH 173
Query: 143 GAC-YLVLKVSKSKMQ-DGFWRFLDKYGYRYEVDHTRALLPCEVMEMIKRFPLETKKKLA 200
G C + + K +++ +G W+ + + P EV+ + F L ++ L
Sbjct: 174 GGCGNIQPTIRKEQLKLNGTWKLGKNEDGEDNGVEKKIITPQEVLRV---FGLISEDDLL 230
Query: 201 GKG----YFPQDGYVIKYLPVPPNCLXXXXXXXXXXX-XXXXXXXTF-LRKLLR-KVEVI 253
G Y + V+ LPVPP + T+ L ++R V
Sbjct: 231 RLGLNVDYARPEWMVLTVLPVPPPAVRPSISVDGTSQGMRSEDDLTYKLSDIIRANSNVR 290
Query: 254 RSSRSGEPNFESHQVEANDLQSVVDQYL---------QIRGCAKPARDIETHFGVNKELS 304
R+ + G P + + + LQ V Y+ I+ +P + I
Sbjct: 291 RAEQEGSPQHITDEF-TSLLQYHVATYMDNDIAGMPKSIQKSGRPLKAIRARL------- 342
Query: 305 DASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNM 364
K+ +++ + K FS+R+VITGD +++VG P A+ +TF ERV +N+
Sbjct: 343 ----KSKEGRLRGNLMGKRVDFSARTVITGDPNLDLDQVGCPRSTARILTFPERVTLYNI 398
Query: 365 CYLQKLV----DENLCLAY--KEGVSTYSLREGSK-GHTYLKPGQIVHRRIMDGDIVFIN 417
LQ+LV +E+ + +E S LR + G L+ G IV R I+DGD + N
Sbjct: 399 HKLQELVRNGPNEHPGAKHIIREDGSRIDLRYHKRAGEIQLQLGWIVERHIVDGDYIIFN 458
Query: 418 RPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELF 477
R P+ HK S+ V + T ++N + P ADFDGD +++ PQ +AEV L
Sbjct: 459 RQPSLHKESMMGHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQGHETRAEVANLC 518
Query: 478 SVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKKG-FMDRAAANQMAMFLSLP-----LPQP 531
+V ++S ++ MD M + + +P +P P
Sbjct: 519 AVPHNIVSPQKNGPLMGIVQDTMAGIWMMTRRDTMMDYEQV--MNILMWVPGWDGVIPTP 576
Query: 532 ALLKAGSGDCYWTSTQILQCALPLSFDC-------------TGGRYLIRESDILGFDLGR 578
A+LK WT QI+ LPL + LI+ +++ +
Sbjct: 577 AILKPSP---RWTGKQIISLGLPLGLNIFRKSEEGDIPLLEKEEPVLIQNGELVWGRFTK 633
Query: 579 DVLPAVINEIAASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHD-FSISGAVKRI 637
++ A + +F KGP + FF+ Q + +GFSVG+ D + V +I
Sbjct: 634 KLVGASGGGVVHYIFNDKGPDATVEFFNAAQRICCYWLLHHGFSVGIGDTVPDADLVAKI 693
Query: 638 TDRNIG-----------------KVSPLLYQLRFIYNELVAQQLEKHMQDIELPAIKFAS 680
++ + + SP + +R + L+ A K +
Sbjct: 694 EEQVVKYKTQVEEYMSEVQIDNMEASPGM-TVRETFENKTKTALDNARNGAGDVAYKGMN 752
Query: 681 KSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDG 740
+ +G M+ S SK + V+Q +GQQ + G+ G + V HF D
Sbjct: 753 ACNNVGTMVKSGSKGSTTNVSQMTAAVGQQ-SLEGKRLPFGFKDRVLPHFP------KDD 805
Query: 741 YPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVC 800
Y A G ++ + GL P E H++ RE ++ ++ +E G + + L+ L ++++
Sbjct: 806 YSPASRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEEIMIK 865
Query: 801 YDGTVRNVCSNSIIQFEYGLKAGDNASYL 829
YDGTVRN + I+QF YG + G +A+Y+
Sbjct: 866 YDGTVRNSLGD-ILQFTYG-EDGLDATYI 892
>N1PVU3_MYCPJ (tr|N1PVU3) Uncharacterized protein OS=Dothistroma septosporum
NZE10 GN=DOTSEDRAFT_70470 PE=4 SV=1
Length = 1773
Score = 204 bits (520), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 222/877 (25%), Positives = 371/877 (42%), Gaps = 107/877 (12%)
Query: 45 NPFLGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKM 104
+P LG RC +CG E +C GHFG+IEL +P++H ++++KK+L VC NC K+
Sbjct: 55 DPKLGTIDRNSRCGTCG-EEQLECPGHFGHIELAIPVFHVGFITKIKKILESVCHNCGKL 113
Query: 105 KKTKFPSSSSGLAQRLLSP-----------------CCQEP-----NAAQVSIREVKTGD 142
+ + S++ +A +L P EP N + + + G
Sbjct: 114 LEDER-STAFAMALKLRDPKRRFEQITRLCKGKTDCAADEPEKDDGNFGEDPKKPKQAGH 172
Query: 143 GACYLVLK-VSKSKMQ-DGFWRFL--DKYGYRYEVDHTRALLPCEVMEMIKRFPLETKKK 198
G C V + K +++ G W+ ++ G ++ R + P + + + E +
Sbjct: 173 GGCGNVQPTIRKEQLKLIGTWKMAKNEETGDDAGIEK-RPITPQMALNIFRNISEEDLAR 231
Query: 199 LA-GKGYFPQDGYVIKYLPVPPNCLXXXXXXXXXXX-XXXXXXXTF-LRKLLR-KVEVIR 254
L Y + V+ LPVPP + T+ L ++R V R
Sbjct: 232 LGLNVDYARPEWMVLTVLPVPPPAVRPSISVDGTSQGMRSEDDLTYKLSDIIRANSNVRR 291
Query: 255 SSRSGEPNFESHQVE--ANDLQSVVDQYLQIRGCAKPARDIETHFGVNKELSDASNKAWL 312
+ G P H +E LQ V Y+ P +T G + A K+
Sbjct: 292 CEQEGSPQ---HILEEFTTLLQYHVATYMDNDIAGLPRAQQKT--GRPLKAIRARLKSKE 346
Query: 313 DKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLVD 372
+++ + K FS+R+VITGD +++VG+P IA+ +TF ERV +N L +LV
Sbjct: 347 GRLRGNLMGKRVDFSARTVITGDPNLDLDQVGVPRSIARVLTFPERVTPYNKHKLTELV- 405
Query: 373 ENLCLAY-------KEGVSTYSLREGSK-GHTYLKPGQIVHRRIMDGDIVFINRPPTTHK 424
N L + ++ S LR + G L G IV R ++D D + NR P+ HK
Sbjct: 406 RNGPLEHPGAKFIIRDDGSRIDLRYHKRAGEINLMVGWIVERHVVDNDYIIFNRQPSLHK 465
Query: 425 HSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLL 484
S+ V + T ++N + P ADFDGD ++L PQS +AEV L +V ++
Sbjct: 466 ESMMGHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSHETRAEVANLCAVPHNIV 525
Query: 485 SSHXXXXXXXXXXXXXXXXXXXVKKG-FMDRAAANQMAMFLSLP-----LPQPALLKAGS 538
S ++ F+D M + L +P +P PA++K
Sbjct: 526 SPQKNGPLMGIVQDTMAGIYMMTRRDVFLDYEQV--MNILLWVPGWDGVVPPPAIIKPLP 583
Query: 539 GDCYWTSTQILQCALPLSFDCTGGR-------------YLIRESDILGFDLGRDVLPAVI 585
WT QI ALP + + +I+ +I+ + + ++ A
Sbjct: 584 ---RWTGKQIASLALPAGLNILRPKKDHMPLREEKDDGLVIQNGEIIWGRMVKGIVGASG 640
Query: 586 NEIAASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHD-FSISGAVKRITDRNIGK 644
+ +F +GP A+ FF+ Q + + NGFSVG+ D V +I D I +
Sbjct: 641 GGVVHCIFNDRGPDAAVEFFNAAQRIVCYWLLHNGFSVGIGDTIPDDFMVGKIEDEIISQ 700
Query: 645 VSPLL-YQLRFIYNEL-------VAQQLEKHMQ-----------DIELPAIKFASKSSRL 685
+ ++ NEL + + E + D+ A K + + +
Sbjct: 701 KEAVQGFETEVQANELEPAPGMTIRETFESKTKAALDNARNKSGDV---AYKHMNACNNV 757
Query: 686 GDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAE 745
G M+ S SK + V+Q +GQQ + G+ G V HF D Y A
Sbjct: 758 GIMVKSGSKGSTTNVSQMTAAVGQQ-SLEGKRLPFGFKYRVLPHFP------KDDYSPAS 810
Query: 746 YGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTV 805
G ++ + GL P E H++ RE ++ ++ +E G + + L+ L +V++ YD TV
Sbjct: 811 RGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEEVMIKYDSTV 870
Query: 806 RNVCSNSIIQFEYGLKAGDNASYLFPAGEHVGVLAAT 842
RN + I+QF YG D +F + + ++AA+
Sbjct: 871 RNSLGD-ILQFAYG---EDGLDAMFIEEQPLSIIAAS 903
>M0VV74_HORVD (tr|M0VV74) DNA-directed RNA polymerase OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 1025
Score = 204 bits (519), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 257/1000 (25%), Positives = 400/1000 (40%), Gaps = 136/1000 (13%)
Query: 48 LGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKMKKT 107
LGLP +CE+CG +C+GH G I+LP + +P E+ ++L+ C C K+
Sbjct: 47 LGLPNGAPQCETCGAQTVRECDGHSGVIKLPATVLNPHLFEEVVQLLNQTCPGCHTPKQN 106
Query: 108 KFPSSSSGLAQRLLSPCCQEPNAAQVSIREVKTGDGACYLVLKVSKSKMQDGFWRFLDKY 167
+ S+G + C + Q K + +SK+K+Q + F+DK
Sbjct: 107 RDSKRSNGATSQATCKYCSKDGTKQYPDVIFKALTSP---RITLSKAKVQHD-YNFMDKI 162
Query: 168 GYRYEV---------------------------------DHTRALL-PCEVMEMIKRFPL 193
EV + T+ LL P +V ++++
Sbjct: 163 SITAEVAGRVTDKSNNNGSCEVLPLDYWDFVPHHHPPQSNMTKILLSPYQVSHILEQLDP 222
Query: 194 ETKKKLAGKGYFPQDGYVIKYLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEVI 253
E + A + + + LPV PN + R ++V
Sbjct: 223 ELFSRFASR----LELIFLSCLPVTPNFHRVAELPYGFSDGPRLAYDDLTKAYKRTIDVG 278
Query: 254 RSSRSGEPNFESHQVEANDLQSVVDQYLQIRGCAKPARDIETHFGVNKELSDASNKAWLD 313
R + + ++ + S V + L++ D E+ +D WL
Sbjct: 279 RKLDDLRQHPQFSVFASSLVTSRVVECLKLSKLHSKKTDKESS-------TDTHGMKWL- 330
Query: 314 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNM------CYL 367
K +SK S + R + GD R++E+GIP ++A + E VNS+N C
Sbjct: 331 --KDAILSKRSDNAFRGTMVGDPKIRLHEIGIPVDLASNLVVSEHVNSYNFDSINSKCNH 388
Query: 368 QKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSL 427
L +E L K T +R+ ++ L G VHR + DGD++ INRPP+ H+HSL
Sbjct: 389 YLLANE--VLVIKRSGKTILVRKPNQ----LVIGDTVHRLLQDGDLILINRPPSVHQHSL 442
Query: 428 QALVVYIHDDHTV-KINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSS 486
L + +V INPL C PL DFDGDC+H + PQS+ ++ E+ EL S+ QLL++
Sbjct: 443 IGLSAKLLPIQSVLSINPLCCAPLAGDFDGDCLHGYVPQSIQSRVELGELVSLSHQLLNA 502
Query: 487 HXXXXXXXXXXXXXXXXXXXV-KKGFMDRAAANQMAMFLSL--PLPQPALLKA-GSGDCY 542
+ + + Q M L P P PA++K+ S
Sbjct: 503 QDGRSLVSLTHDSLAAAYLLTSSEVLLKKTEIQQFQMLLHPLSPTPGPAIMKSIHSHGPL 562
Query: 543 WTSTQILQCALP--LSFDCTGGRYLIRESDILGFDLGRDVLPAVINEIAASVFFGKGPQE 600
WT Q+ LP +SF ++I + ++L L I+ + + +F G
Sbjct: 563 WTGKQLFSMLLPSDMSFSIESKVHII-DGEVLACPSESFWLQNSISGLFSFMFKQYG-DT 620
Query: 601 ALNFFDVLQPFLMECIFSNGFSVGLHD---FSISGAVKRITD-RNIG------------- 643
AL Q L E + G SV L D F + +++ D N+
Sbjct: 621 ALELLSSAQDVLCEFLTMRGLSVSLSDIYLFPDHDSRRKLADGVNLALDDAEEAFRIKQI 680
Query: 644 KVSPLLYQLRFIYNELVAQQLEKHMQDI---ELPAIK-----FASKSSRLGDMI------ 689
+SP + Y++ D LP IK F S S L M+
Sbjct: 681 LLSPDSIPILKCYDDCADLSQSYEQSDFIQSNLPIIKSSIMAFKSVFSDLQKMVQQHTAR 740
Query: 690 --------DSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGY 741
++ SK ++ K QQ +G QL + AS + K + G+
Sbjct: 741 NNSMMIMTNAGSKGSMLKFVQQTACVGLQLPASRFPFRIPSELSCASWNRHKSEGRGECL 800
Query: 742 PSAE-YGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVC 800
Y +++ F GL+P E L+HSIS R S PGTL + LM LRD+ V
Sbjct: 801 GGQNLYAVIRNSFAGGLNPLECLLHSISGRANFF--SENADVPGTLTRKLMYHLRDLYVA 858
Query: 801 YDGTVRNVCSNSIIQFEYGLKAGDNASYLFPAGE---HVGVLAATAMSNPAYKAV----- 852
YDGTVR+ I+QF Y A D S GE VG AA ++S AY A+
Sbjct: 859 YDGTVRSSYGQQIMQFTYD-TAEDMCSDRNLEGELGAPVGSWAACSISEAAYGALDHPVN 917
Query: 853 -LDASPSSNCSWELMKEILLCKVHFRNEPIDRRVILYLNDCDCGRSYCRENAAYAVKNQL 911
L+ SP N ++++L C+ +D +L+L+ Y E A+ VK+ L
Sbjct: 918 SLEESPLMN-----LQDVLKCQK--GGTSMDHVGLLFLSKNLKKYRYGLEYASLEVKDYL 970
Query: 912 RKVSLKDTAVDFIVEYQQQRKRKGSEIDAGLVGHIHLDEV 951
V+ D +V + + KGS H HL +V
Sbjct: 971 EPVNFSDLVDTVMVLHGGCQSTKGSP----WTTHFHLSQV 1006
>K1W5F5_TRIAC (tr|K1W5F5) DNA-directed RNA polymerase OS=Trichosporon asahii var.
asahii (strain CBS 8904) GN=A1Q2_01613 PE=3 SV=1
Length = 1771
Score = 202 bits (515), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 219/907 (24%), Positives = 357/907 (39%), Gaps = 138/907 (15%)
Query: 17 IQFGMATRQEIC--TXXXXXXXXXXXXXXXNPFLGLPLEYGRCESCGTSEAGKCEGHFGY 74
IQFG+ + +EI +P +G +C++C A +C GHFG+
Sbjct: 18 IQFGVMSPEEIIEHPEVMDENGKQKVGGLMDPKMGTIDRNFKCQTCSEGMA-ECPGHFGH 76
Query: 75 IELPVPIYHPSHVSELKKMLSLVCLNCLKMKKTKFPSSSSGLAQRLL------------- 121
IEL P++H + ++KK+L VC +C K+K + +R+
Sbjct: 77 IELARPVFHAGFIVKVKKILECVCYSCGKLKVDMRDPMVQNIVRRIKPQHRLKAIWDLAK 136
Query: 122 ------SPCCQEPNAAQVSIRE-----VKTGDGAC--------------YLVLKVSKSKM 156
+ +E +A Q E KTG G C V K SK K
Sbjct: 137 AKNVCEADSLEENDAEQDEYGENSGPKPKTGHGGCGHHQPAYRKEGLKLIAVFKPSKDKQ 196
Query: 157 QDGFWRFLDKYGYRYEVDHTRALLPCEVMEMIKRFPLETKKKLA-GKGYFPQDGYVIKYL 215
++G R + E ++K+ P E + Y D ++ L
Sbjct: 197 EEG------------SEPERRNISAAECHNILKKIPDEDLLIMGLNAEYARPDWMILTVL 244
Query: 216 PVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEVIRSSRS-GEP-----------NF 263
PVPP + L ++L+ +R + G P F
Sbjct: 245 PVPPAAVRPSISVDGGAMRSEDDLTYKLGEILKASAQVRKLEAEGVPPSVVNEHFDLLQF 304
Query: 264 ESHQVEANDLQSVVDQYLQIRGCAKPARDIETHFGVNKELSDASNKAWLDKMKSLFISKG 323
ND+ + Q LQ G +P + I K +++ + K
Sbjct: 305 HVATYMDNDIAGI-PQALQKSG--RPVKAIRARL-----------KGKEGRLRGNLMGKR 350
Query: 324 SGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLVDENLCLAYKEGV 383
FS+R+VITGD ++++VG+P IA +T+ ERV +N+ YLQ+L+ N A G
Sbjct: 351 VDFSARTVITGDPNLQLDQVGVPRSIAMTLTYPERVTPYNINYLQQLI--NNGPATYPGA 408
Query: 384 STYSLREGSK-GHTYLKPGQ--------IVHRRIMDGDIVFINRPPTTHKHSLQALVVYI 434
Y G + Y K G+ IV R + DGD V NR P+ HK S+ + V +
Sbjct: 409 RYYVKDTGERIDLKYRKSGEPIPLQFGWIVERHLKDGDYVLFNRQPSLHKMSMMSHRVKV 468
Query: 435 HDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHXXXXXXX 494
+ T ++N + P ADFDGD ++L PQS +AE+ ++ V +Q++S
Sbjct: 469 MNYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQIAWVPRQIISPQANKPVMG 528
Query: 495 XXXXXX-XXXXXXVKKGFMDRAAANQMAMFLS---LPLPQPALLKAGSGDCYWTSTQILQ 550
++ F D A + ++L +P PA+LK WT Q++
Sbjct: 529 IVQDTLCGVRKFTLRDNFCDWAFVQNLLLWLPDWDGTIPPPAILKP---RPMWTGKQLVS 585
Query: 551 CALPLS-------------FDCTGGRYLIRESDILGFDLGRDVLPAVINEIAASVFFGKG 597
+P D T L+ +++ + + + A N + +F G
Sbjct: 586 MCIPKGINIAAHDNERPSPIDVTDQNVLVDNGELVYGTITKSMAGAASNGLIHVIFRELG 645
Query: 598 PQEALNFFDVLQPFLMECIFSNGFSVGLHD-FSISGAVKRITDR---------------- 640
+A +FF +Q + + NGFSVG+ D + S + + +R
Sbjct: 646 HIKARDFFSAMQRVINFWLLHNGFSVGIGDTIADSATMAAVNNRLVEAKDTVQAFISEAE 705
Query: 641 -NIGKVSPLLYQLRFIYNELVAQQLEKHMQDIELPAIKFASKSSRLGDMIDSKSKSALDK 699
N K P + +R V+ +L K A + + M+ S +K +
Sbjct: 706 NNKMKPRPGM-TIRETLEAAVSGELNKARDWAGKTAQDNLKADNNVKQMVVSGAKGSFIN 764
Query: 700 VTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGCFFHGLDP 759
++Q G +GQQ+ V G+ G HF D Y G ++ + GL P
Sbjct: 765 ISQMSGCVGQQI-VEGKRIPFGFRHRTLPHFS------KDDYGPESRGFVENSYLRGLTP 817
Query: 760 FEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 819
E H++ RE ++ ++ +E G + + L+ + D+ V YDGTVRN IIQF YG
Sbjct: 818 QEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKAMEDLKVGYDGTVRN-SGGDIIQFLYG 876
Query: 820 LKAGDNA 826
D A
Sbjct: 877 EDGMDGA 883
>J4U7H4_TRIAS (tr|J4U7H4) DNA-directed RNA polymerase OS=Trichosporon asahii var.
asahii (strain ATCC 90039 / CBS 2479 / JCM 2466 / KCTC
7840 / NCYC 2677 / UAMH 7654) GN=A1Q1_05094 PE=3 SV=1
Length = 1787
Score = 202 bits (515), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 219/907 (24%), Positives = 357/907 (39%), Gaps = 138/907 (15%)
Query: 17 IQFGMATRQEIC--TXXXXXXXXXXXXXXXNPFLGLPLEYGRCESCGTSEAGKCEGHFGY 74
IQFG+ + +EI +P +G +C++C A +C GHFG+
Sbjct: 18 IQFGVMSPEEIIEHPEVMDENGKQKVGGLMDPKMGTIDRNFKCQTCSEGMA-ECPGHFGH 76
Query: 75 IELPVPIYHPSHVSELKKMLSLVCLNCLKMKKTKFPSSSSGLAQRLL------------- 121
IEL P++H + ++KK+L VC +C K+K + +R+
Sbjct: 77 IELARPVFHAGFIVKVKKILECVCYSCGKLKVDMRDPMVQNIVRRIKPQHRLKAIWDLAK 136
Query: 122 ------SPCCQEPNAAQVSIRE-----VKTGDGAC--------------YLVLKVSKSKM 156
+ +E +A Q E KTG G C V K SK K
Sbjct: 137 AKNVCEADSLEENDAEQDEYGENSGPKPKTGHGGCGHHQPAYRKEGLKLIAVFKPSKDKQ 196
Query: 157 QDGFWRFLDKYGYRYEVDHTRALLPCEVMEMIKRFPLETKKKLA-GKGYFPQDGYVIKYL 215
++G R + E ++K+ P E + Y D ++ L
Sbjct: 197 EEG------------SEPERRNISAAECHNILKKIPDEDLLIMGLNAEYARPDWMILTVL 244
Query: 216 PVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEVIRSSRS-GEP-----------NF 263
PVPP + L ++L+ +R + G P F
Sbjct: 245 PVPPAAVRPSISVDGGAMRSEDDLTYKLGEILKASAQVRKLEAEGVPPSVVNEHFDLLQF 304
Query: 264 ESHQVEANDLQSVVDQYLQIRGCAKPARDIETHFGVNKELSDASNKAWLDKMKSLFISKG 323
ND+ + Q LQ G +P + I K +++ + K
Sbjct: 305 HVATYMDNDIAGI-PQALQKSG--RPVKAIRARL-----------KGKEGRLRGNLMGKR 350
Query: 324 SGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLVDENLCLAYKEGV 383
FS+R+VITGD ++++VG+P IA +T+ ERV +N+ YLQ+L+ N A G
Sbjct: 351 VDFSARTVITGDPNLQLDQVGVPRSIAMTLTYPERVTPYNINYLQQLI--NNGPATYPGA 408
Query: 384 STYSLREGSK-GHTYLKPGQ--------IVHRRIMDGDIVFINRPPTTHKHSLQALVVYI 434
Y G + Y K G+ IV R + DGD V NR P+ HK S+ + V +
Sbjct: 409 RYYVKDTGERIDLKYRKSGEPIPLQFGWIVERHLKDGDYVLFNRQPSLHKMSMMSHRVKV 468
Query: 435 HDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHXXXXXXX 494
+ T ++N + P ADFDGD ++L PQS +AE+ ++ V +Q++S
Sbjct: 469 MNYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQIAWVPRQIISPQANKPVMG 528
Query: 495 XXXXXX-XXXXXXVKKGFMDRAAANQMAMFLS---LPLPQPALLKAGSGDCYWTSTQILQ 550
++ F D A + ++L +P PA+LK WT Q++
Sbjct: 529 IVQDTLCGVRKFTLRDNFCDWAFVQNLLLWLPDWDGTIPPPAILKP---RPMWTGKQLVS 585
Query: 551 CALPLS-------------FDCTGGRYLIRESDILGFDLGRDVLPAVINEIAASVFFGKG 597
+P D T L+ +++ + + + A N + +F G
Sbjct: 586 MCIPKGINIAAHDNERPSPIDVTDQNVLVDNGELVYGTITKSMAGAASNGLIHVIFRELG 645
Query: 598 PQEALNFFDVLQPFLMECIFSNGFSVGLHD-FSISGAVKRITDR---------------- 640
+A +FF +Q + + NGFSVG+ D + S + + +R
Sbjct: 646 HIKARDFFSAMQRVINFWLLHNGFSVGIGDTIADSATMAAVNNRLVEAKDTVQAFISEAE 705
Query: 641 -NIGKVSPLLYQLRFIYNELVAQQLEKHMQDIELPAIKFASKSSRLGDMIDSKSKSALDK 699
N K P + +R V+ +L K A + + M+ S +K +
Sbjct: 706 NNKMKPRPGM-TIRETLEAAVSGELNKARDWAGKTAQDNLKADNNVKQMVVSGAKGSFIN 764
Query: 700 VTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGCFFHGLDP 759
++Q G +GQQ+ V G+ G HF D Y G ++ + GL P
Sbjct: 765 ISQMSGCVGQQI-VEGKRIPFGFRHRTLPHFS------KDDYGPESRGFVENSYLRGLTP 817
Query: 760 FEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 819
E H++ RE ++ ++ +E G + + L+ + D+ V YDGTVRN IIQF YG
Sbjct: 818 QEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKAMEDLKVGYDGTVRN-SGGDIIQFLYG 876
Query: 820 LKAGDNA 826
D A
Sbjct: 877 EDGMDGA 883
>Q0PQ11_9PEZI (tr|Q0PQ11) DNA-directed RNA polymerase (Fragment) OS=Simonyella
variegata GN=RPB1 PE=3 SV=1
Length = 1013
Score = 198 bits (504), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 228/880 (25%), Positives = 364/880 (41%), Gaps = 105/880 (11%)
Query: 67 KCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKMK------------KTKFPSSSS 114
+C GHFG+IEL P++H +++ KK+L VC NC K+ + + P
Sbjct: 1 ECPGHFGHIELAAPVFHIGFINKTKKLLETVCHNCSKVLLDESNQAFAAALRIRDPKRRF 60
Query: 115 GLAQRLLS--PCC---QEPNAAQVSIRE-VKTGDGAC---YLVLKVSKSKMQDGFWRFL- 164
+L P C P + +E +K G C + ++ K+Q G W+
Sbjct: 61 DTVHKLCKSRPICVPDPSPEEKEADPKEAMKPTHGGCGNRHPQIRKEGLKIQ-GTWKVPK 119
Query: 165 -DKYGYRYEVDHTRALLPCEVMEMIKRFPLETKKKLA-GKGYFPQDGYVIKYLPVPP-NC 221
+ R + R + P +++ + E +KL Y + +I LPVPP
Sbjct: 120 GEDEEERGATEEKRMITPQMALDIFRNISQEDIRKLGLSNDYARPEWMIITVLPVPPPQV 179
Query: 222 LXXXXXXXXXXXXXXXXXXTF-LRKLLR-KVEVIRSSRSGEPNFESHQVEANDLQSVVDQ 279
T+ L ++R + V R G P + E+ LQ V
Sbjct: 180 RPSVVVSNSGAGPRGEDDLTYKLGDIVRANMNVRRCESEGSPQHVKTEFESL-LQFHVAT 238
Query: 280 YL------QIRGCAKPARDIETHFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVIT 333
Y+ Q + K R +++ A K +++ + K FS+R+VIT
Sbjct: 239 YMDNNIAGQPQALQKSGRPVKS--------IRARLKGKEGRLRGNLMGKRVDFSARTVIT 290
Query: 334 GDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLVDENLCL-------AYKEGVSTY 386
GD ++EVG+P I + +T+ E VN N+ YL +LV+ L + T+
Sbjct: 291 GDPNLSLDEVGVPVTICKTLTYVETVNPRNIAYLSRLVETGPNLHPGANYVINMDRTKTW 350
Query: 387 SLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLI 446
LR K L+ G V R I DGD + NR P+ HK S+ V + T ++N +
Sbjct: 351 DLRR-VKNPPRLEYGWQVERHIDDGDYIIFNRQPSLHKESMMGHRVKVMPWSTFRLNLSV 409
Query: 447 CGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXX 506
GP ADFDGD ++L PQ+ A +AEV EL V ++S
Sbjct: 410 TGPYNADFDGDEMNLHVPQTEATRAEVKELCMVPHNIVSPQRNGPLMGIVQDTLCGIYKI 469
Query: 507 VKKG-FMDRAAANQMAMFLSLP-----LPQPALLKAGSGDCYWTSTQILQCALPLSFDCT 560
++ F+ + A M + + +P +PQPALLK WT QI+ ALP +
Sbjct: 470 CRRDVFLTQEQA--MNVLMWVPEWDGIMPQPALLKPKP---MWTGKQIISLALPAGLNLL 524
Query: 561 GGR-----------YLIRESDILGFDLGRDVLPAVINEIAASVFFGKGPQEALNFFDVLQ 609
G + +++ + + A I +F KGP A+ FF+ Q
Sbjct: 525 RGSEEGMSPVNDDGLFVNNGELMFGLFSKKSVGASGGGIIHVIFNEKGPDAAVRFFNGAQ 584
Query: 610 PFLMECIFSNGFSVGLHDFS--------ISGAVKR--------ITDRNIGKVSPLL-YQL 652
+ + NGFS+G+ D + I GA+ T+ ++ PL +
Sbjct: 585 QIVNYWLLQNGFSIGIGDTTPDPTTVQQIQGAIDEQKAEVEAITTEATNNELEPLPGMNI 644
Query: 653 RFIYNELVAQQLEKHMQDIELPAIKFASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLF 712
R + V++ L + K + M + SK + ++Q +GQQ
Sbjct: 645 RETFESKVSKALNSARDNAGSKTEKSLKDINNAVQMARAGSKGSTINISQMTAVVGQQ-S 703
Query: 713 VRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGCFF-HGLDPFEELVHSISTRE 771
V G+ G HF K DY S E L G F GL P E H+++ RE
Sbjct: 704 VEGKRIPFGFKYRTLPHFT-KDDY------SPEAPWLCGKFLSXGLTPTEFFFHAMAGRE 756
Query: 772 IMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGLKAGDNASYLFP 831
++ ++ +E G + + L+ L DV+ YD TVRN + I+QF YG + G +A Y+
Sbjct: 757 GLIDTAVKTAETGYIQRRLVKALEDVMAKYDTTVRNSLGD-IVQFVYG-EDGLDAVYI-- 812
Query: 832 AGEHVGVLA-ATAMSNPAYKA-VLDASPSSNCSWELMKEI 869
+ + +A + A + +K V+D S S EL EI
Sbjct: 813 EQQRLDFIACSNAQFDKKFKVDVMDTSAPLAESLELSSEI 852
>M5VSC7_PRUPE (tr|M5VSC7) Uncharacterized protein OS=Prunus persica
GN=PRUPE_ppa000093mg PE=4 SV=1
Length = 1844
Score = 194 bits (494), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 201/857 (23%), Positives = 345/857 (40%), Gaps = 105/857 (12%)
Query: 45 NPFLGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKM 104
+P LG +CE+C T+ +C GHFG++EL P++H + + ++ VC NC K+
Sbjct: 54 DPRLGTIDRKMKCETC-TANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKI 112
Query: 105 ---------KKTKFPSSSSGLAQRLLSPC-----CQ-------EPNAAQVSIREVKTGDG 143
K+ S +++L C C + ++ +++ + G G
Sbjct: 113 LVDEDDHKFKQALRIKSPKNRLKKILDACKNKTKCDGGDEIDVQGQESEEPVKKSRGGCG 172
Query: 144 ACYLVLKVSKSKMQDGFW----RFLDKYGYRYEVDHTRALLPCEVMEMIKRFPLETKKKL 199
A L + KM + + D+ V+ + L V+ ++KR E + L
Sbjct: 173 AQQPKLSIEGMKMNAEYKAQRKKSDDQEQLPEPVERKQTLTAERVLSVLKRISDEDSQLL 232
Query: 200 A-GKGYFPQDGYVIKYLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEVIRSSRS 258
Y D +++ LP+PP + + + R R+
Sbjct: 233 GLNPKYARPDWMILQVLPIPPQPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERN 292
Query: 259 GEPNFESHQVE--ANDLQSVVDQYLQ------IRGCAKPARDIETHFGVNKELSDASNKA 310
G P +H + A LQ + Y R + R I++ + L KA
Sbjct: 293 GSP---AHIISEFAQLLQFHIATYFDNELPGLPRATQRSGRPIKS---ICSRL-----KA 341
Query: 311 WLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKL 370
+++ + K FS+R+VIT D I+++G+P IA +T+ E V +N+ L++L
Sbjct: 342 KEGRIRGNLMGKRVDFSARTVITPDPNINIDQLGVPWSIALNLTYPETVTPYNIERLKEL 401
Query: 371 VDENLCLAYKEGVSTYSLREGSK----------GHTYLKPGQIVHRRIMDGDIVFINRPP 420
V+ + + Y +R+ + +L+ G V R + DGD V NR P
Sbjct: 402 VENGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQP 461
Query: 421 TTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVE 480
+ HK S+ + I T ++N + P ADFDGD +++ PQS +AEV+EL V
Sbjct: 462 SLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVP 521
Query: 481 KQLLSSHXXXXXXXXXXXXXXXXXXXVKK-GFMDRAAANQMAMF---LSLPLPQPALLKA 536
K ++S K+ F+++ + M+ +P PA+LK
Sbjct: 522 KCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKP 581
Query: 537 GSGDCYWTSTQILQCALPL---------------SFDCTGGRYLIR--ESDILGFDLGRD 579
WT Q+ +P S + T G +R + ++L L +
Sbjct: 582 RP---LWTGKQVFNLIIPKQINLQRTSAWHSEAESGNITPGDTFVRIEKGELLAGTLCKK 638
Query: 580 VLPAVINEIAASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHDFSISGAVKRITD 639
L + ++ GP A F Q + + N FS+G+ D A +
Sbjct: 639 ALGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKIN 698
Query: 640 RNIGKVSPLLYQL--------------RFIYNEL---VAQQLEKHMQDIELPAIKFASKS 682
I K + L R + + V Q L + D A K S+S
Sbjct: 699 ETISKAKNEVKDLISKAQSKQLEAEPGRTMMDSFENKVNQVLNRARDDAGSSAQKSLSES 758
Query: 683 SRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYP 742
+ L M+ + SK + ++Q +GQQ V G+ G ++ HF D Y
Sbjct: 759 NNLKAMVTAGSKGSFINISQMTACVGQQ-NVEGKRIPYGFIDRTLPHFT------KDDYG 811
Query: 743 SAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYD 802
G ++ + GL P E H++ RE ++ ++ SE G + + L+ + D++V YD
Sbjct: 812 PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 871
Query: 803 GTVRNVCSNSIIQFEYG 819
GTVRN + +IQF YG
Sbjct: 872 GTVRNSLGD-VIQFLYG 887
>M0VV76_HORVD (tr|M0VV76) DNA-directed RNA polymerase OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 927
Score = 194 bits (493), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 236/909 (25%), Positives = 363/909 (39%), Gaps = 125/909 (13%)
Query: 48 LGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKMKKT 107
LGLP +CE+CG +C+GH G I+LP + +P E+ ++L+ C C K+
Sbjct: 47 LGLPNGAPQCETCGAQTVRECDGHSGVIKLPATVLNPHLFEEVVQLLNQTCPGCHTPKQN 106
Query: 108 KFPSSSSGLAQRLLSPCCQEPNAAQVSIREVKTGDGACYLVLKVSKSKMQDGFWRFLDKY 167
+ S+G + C + Q K + +SK+K+Q + F+DK
Sbjct: 107 RDSKRSNGATSQATCKYCSKDGTKQYPDVIFKALTSP---RITLSKAKVQHD-YNFMDKI 162
Query: 168 GYRYEV---------------------------------DHTRALL-PCEVMEMIKRFPL 193
EV + T+ LL P +V ++++
Sbjct: 163 SITAEVAGRVTDKSNNNGSCEVLPLDYWDFVPHHHPPQSNMTKILLSPYQVSHILEQLDP 222
Query: 194 ETKKKLAGKGYFPQDGYVIKYLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEVI 253
E + A + + + LPV PN + R ++V
Sbjct: 223 ELFSRFASR----LELIFLSCLPVTPNFHRVAELPYGFSDGPRLAYDDLTKAYKRTIDVG 278
Query: 254 RSSRSGEPNFESHQVEANDLQSVVDQYLQIRGCAKPARDIETHFGVNKELSDASNKAWLD 313
R + + ++ + S V + L++ D E+ +D WL
Sbjct: 279 RKLDDLRQHPQFSVFASSLVTSRVVECLKLSKLHSKKTDKESS-------TDTHGMKWL- 330
Query: 314 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNM------CYL 367
K +SK S + R + GD R++E+GIP ++A + E VNS+N C
Sbjct: 331 --KDAILSKRSDNAFRGTMVGDPKIRLHEIGIPVDLASNLVVSEHVNSYNFDSINSKCNH 388
Query: 368 QKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSL 427
L +E L K T +R+ ++ L G VHR + DGD++ INRPP+ H+HSL
Sbjct: 389 YLLANE--VLVIKRSGKTILVRKPNQ----LVIGDTVHRLLQDGDLILINRPPSVHQHSL 442
Query: 428 QALVVYIHDDHTV-KINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSS 486
L + +V INPL C PL DFDGDC+H + PQS+ ++ E+ EL S+ QLL++
Sbjct: 443 IGLSAKLLPIQSVLSINPLCCAPLAGDFDGDCLHGYVPQSIQSRVELGELVSLSHQLLNA 502
Query: 487 HXXXXXXXXXXXXXXXXXXXV-KKGFMDRAAANQMAMFLSL--PLPQPALLKA-GSGDCY 542
+ + + Q M L P P PA++K+ S
Sbjct: 503 QDGRSLVSLTHDSLAAAYLLTSSEVLLKKTEIQQFQMLLHPLSPTPGPAIMKSIHSHGPL 562
Query: 543 WTSTQILQCALP--LSFDCTGGRYLIRESDILGFDLGRDVLPAVINEIAASVFFGKGPQE 600
WT Q+ LP +SF ++I + ++L L I+ + + +F G
Sbjct: 563 WTGKQLFSMLLPSDMSFSIESKVHII-DGEVLACPSESFWLQNSISGLFSFMFKQYG-DT 620
Query: 601 ALNFFDVLQPFLMECIFSNGFSVGLHD---FSISGAVKRITD-RNIG------------- 643
AL Q L E + G SV L D F + +++ D N+
Sbjct: 621 ALELLSSAQDVLCEFLTMRGLSVSLSDIYLFPDHDSRRKLADGVNLALDDAEEAFRIKQI 680
Query: 644 KVSPLLYQLRFIYNELVAQQLEKHMQDI---ELPAIK-----FASKSSRLGDMI------ 689
+SP + Y++ D LP IK F S S L M+
Sbjct: 681 LLSPDSIPILKCYDDCADLSQSYEQSDFIQSNLPIIKSSIMAFKSVFSDLQKMVQQHTAR 740
Query: 690 --------DSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGY 741
++ SK ++ K QQ +G QL + AS + K + G+
Sbjct: 741 NNSMMIMTNAGSKGSMLKFVQQTACVGLQLPASRFPFRIPSELSCASWNRHKSEGRGECL 800
Query: 742 PSAE-YGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVC 800
Y +++ F GL+P E L+HSIS R S PGTL + LM LRD+ V
Sbjct: 801 GGQNLYAVIRNSFAGGLNPLECLLHSISGRANFF--SENADVPGTLTRKLMYHLRDLYVA 858
Query: 801 YDGTVRNVCSNSIIQFEYGLKAGDNASYLFPAGE---HVGVLAATAMSNPAYKAV----- 852
YDGTVR+ I+QF Y A D S GE VG AA ++S AY A+
Sbjct: 859 YDGTVRSSYGQQIMQFTYD-TAEDMCSDRNLEGELGAPVGSWAACSISEAAYGALDHPVN 917
Query: 853 -LDASPSSN 860
L+ SP N
Sbjct: 918 SLEESPLMN 926
>F2QW17_PICP7 (tr|F2QW17) DNA-directed RNA polymerase OS=Komagataella pastoris
(strain ATCC 76273 / CBS 7435 / CECT 11047 / NRRL
Y-11430 / Wegner 21-1) GN=PP7435_Chr3-0638 PE=3 SV=1
Length = 1743
Score = 193 bits (490), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 205/835 (24%), Positives = 352/835 (42%), Gaps = 101/835 (12%)
Query: 56 RCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKMKKTKFPSSSSG 115
+C++CG A +C GHFG++EL P++H + ++KK+ +C+NC K+ ++
Sbjct: 66 KCQTCGEGMA-ECPGHFGHMELAKPVFHIGFIPKIKKVCECICMNCGKLL---LDETNPT 121
Query: 116 LAQ--RLLSP----------------CCQEPNAAQVSIREVKTGDGACYLVLKVSKSKMQ 157
+AQ R+ P C + + S ++V + G V K M+
Sbjct: 122 MAQAIRIRDPKKRFNAVWQLCKTKMVCEADAPVDEYSEQKVVSRGGCGNTQPVVRKDGMK 181
Query: 158 DGFWRFLDKYGY--RYEVDHTRALLPCEVMEMIKRFPLETKKKLA-GKGYFPQDGYVIKY 214
W K G+ R + L P E++ + K E +L + Y + +I
Sbjct: 182 --LWGTWKKSGFSDRDAQPERKLLTPGEILNVFKHISPEDCFRLGFNEDYARPEWMIITV 239
Query: 215 LPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEVIRSSRSGEPNFESHQVEANDLQ 274
LPVPP + L + V + G P ++VE LQ
Sbjct: 240 LPVPPPQVRPSIAMDETTQGQDDLTHKLSDILKANINVQKLEMDGSPQHIINEVE-QLLQ 298
Query: 275 SVVDQYL------QIRGCAKPARDIETHFGVNKELSDASNKAWLDKMKSLFISKGSGFSS 328
V Y+ Q + K R ++ A K +++ + K FS+
Sbjct: 299 FHVATYMDNDIAGQPQALQKSGRPVKA--------IRARLKGKEGRLRGNLMGKRVDFSA 350
Query: 329 RSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLV----DENLCLAY--KEG 382
R+VI+GD +++VG+P IA+ +++ E V +N+ L + V +E+ Y ++
Sbjct: 351 RTVISGDPNLELDQVGVPISIAKTLSYPETVTQYNIHRLTEYVRNGPNEHPGAKYVIRDN 410
Query: 383 VSTYSLREGSK-GHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALVVYIHDDHTVK 441
LR + G L+ G V R +MD D V NR P+ HK S+ A V + T +
Sbjct: 411 GDRIDLRYHKRAGDIVLQYGWKVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFR 470
Query: 442 INPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHXXXXXXXXXXXXX- 500
+N + P ADFDGD ++L PQS +AE+ +L +V Q++S
Sbjct: 471 LNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPVMGIVQDTLC 530
Query: 501 XXXXXXVKKGFMDRAAANQMAMFLSLP-----LPQPALLKAGSGDCYWTSTQILQCALPL 555
++ F++ M M +P +PQPA+LK WT Q+L A+P
Sbjct: 531 GVRKMTLRDTFIEYEQV--MNMLFWVPSWDGVVPQPAILKPKP---LWTGKQLLSIAIPS 585
Query: 556 SFDCT---GGRYLIRESDILGFDLGRDVLPAVINE---------IAASVFFGKGPQEALN 603
GG L+ D + V+ V+++ + +V KGP+
Sbjct: 586 GIHLQRTDGGNSLLSPKDNGMLIVDGKVMFGVVDKKTVGSGGGGLIHTVMREKGPKICAE 645
Query: 604 FFDVLQPFLMECIFSNGFSVGLHD-FSISGAVKRIT---DRNIGKVSPLLYQLRFIYNEL 659
F +Q + + NGFS+G+ D + + +K IT +V ++Y+ + +NEL
Sbjct: 646 LFGNIQKVVNYWLLHNGFSIGIGDAIADASTMKEITHAISSAKEQVQEIIYKAQ--HNEL 703
Query: 660 -------VAQQLEKHMQDIELPAIKFASKSSRLG--------DMIDSKSKSALDKVTQQI 704
+ + E + A A +S+ + M+ + SK + + Q
Sbjct: 704 ELKPGMTLRESFEGEVSRTLNDARDSAGRSAEMNLKDLNNVKQMVSAGSKGSFINIAQMS 763
Query: 705 GFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELV 764
+GQQ+ V G+ + G + HF D + G ++ + GL P E
Sbjct: 764 ACVGQQM-VEGKRIAFGFADRSLPHFT------KDDFSPESKGFVENSYLRGLTPQEFFF 816
Query: 765 HSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 819
H+++ RE ++ ++ +E G + + L+ L D++V YDGT RN + IIQF YG
Sbjct: 817 HAMAGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGD-IIQFLYG 870
>C4R4Y0_PICPG (tr|C4R4Y0) DNA-directed RNA polymerase OS=Komagataella pastoris
(strain GS115 / ATCC 20864) GN=PAS_chr3_0568 PE=3 SV=1
Length = 1743
Score = 193 bits (490), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 205/835 (24%), Positives = 352/835 (42%), Gaps = 101/835 (12%)
Query: 56 RCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKMKKTKFPSSSSG 115
+C++CG A +C GHFG++EL P++H + ++KK+ +C+NC K+ ++
Sbjct: 66 KCQTCGEGMA-ECPGHFGHMELAKPVFHIGFIPKIKKVCECICMNCGKLL---LDETNPT 121
Query: 116 LAQ--RLLSP----------------CCQEPNAAQVSIREVKTGDGACYLVLKVSKSKMQ 157
+AQ R+ P C + + S ++V + G V K M+
Sbjct: 122 MAQAIRIRDPKKRFNAVWQLCKTKMVCEADAPVDEYSEQKVVSRGGCGNTQPVVRKDGMK 181
Query: 158 DGFWRFLDKYGY--RYEVDHTRALLPCEVMEMIKRFPLETKKKLA-GKGYFPQDGYVIKY 214
W K G+ R + L P E++ + K E +L + Y + +I
Sbjct: 182 --LWGTWKKSGFSDRDAQPERKLLTPGEILNVFKHISPEDCFRLGFNEDYARPEWMIITV 239
Query: 215 LPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEVIRSSRSGEPNFESHQVEANDLQ 274
LPVPP + L + V + G P ++VE LQ
Sbjct: 240 LPVPPPQVRPSIAMDETTQGQDDLTHKLSDILKANINVQKLEMDGSPQHIINEVE-QLLQ 298
Query: 275 SVVDQYL------QIRGCAKPARDIETHFGVNKELSDASNKAWLDKMKSLFISKGSGFSS 328
V Y+ Q + K R ++ A K +++ + K FS+
Sbjct: 299 FHVATYMDNDIAGQPQALQKSGRPVKA--------IRARLKGKEGRLRGNLMGKRVDFSA 350
Query: 329 RSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLV----DENLCLAY--KEG 382
R+VI+GD +++VG+P IA+ +++ E V +N+ L + V +E+ Y ++
Sbjct: 351 RTVISGDPNLELDQVGVPISIAKTLSYPETVTQYNIHRLTEYVRNGPNEHPGAKYVIRDN 410
Query: 383 VSTYSLREGSK-GHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALVVYIHDDHTVK 441
LR + G L+ G V R +MD D V NR P+ HK S+ A V + T +
Sbjct: 411 GDRIDLRYHKRAGDIVLQYGWKVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFR 470
Query: 442 INPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHXXXXXXXXXXXXX- 500
+N + P ADFDGD ++L PQS +AE+ +L +V Q++S
Sbjct: 471 LNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPVMGIVQDTLC 530
Query: 501 XXXXXXVKKGFMDRAAANQMAMFLSLP-----LPQPALLKAGSGDCYWTSTQILQCALPL 555
++ F++ M M +P +PQPA+LK WT Q+L A+P
Sbjct: 531 GVRKMTLRDTFIEYEQV--MNMLFWVPSWDGVVPQPAILKPKP---LWTGKQLLSIAIPS 585
Query: 556 SFDCT---GGRYLIRESDILGFDLGRDVLPAVINE---------IAASVFFGKGPQEALN 603
GG L+ D + V+ V+++ + +V KGP+
Sbjct: 586 GIHLQRTDGGNSLLSPKDNGMLIVDGKVMFGVVDKKTVGSGGGGLIHTVMREKGPKICAE 645
Query: 604 FFDVLQPFLMECIFSNGFSVGLHD-FSISGAVKRIT---DRNIGKVSPLLYQLRFIYNEL 659
F +Q + + NGFS+G+ D + + +K IT +V ++Y+ + +NEL
Sbjct: 646 LFGNIQKVVNYWLLHNGFSIGIGDAIADASTMKEITHAISSAKEQVQEIIYKAQ--HNEL 703
Query: 660 -------VAQQLEKHMQDIELPAIKFASKSSRLG--------DMIDSKSKSALDKVTQQI 704
+ + E + A A +S+ + M+ + SK + + Q
Sbjct: 704 ELKPGMTLRESFEGEVSRTLNDARDSAGRSAEMNLKDLNNVKQMVSAGSKGSFINIAQMS 763
Query: 705 GFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELV 764
+GQQ+ V G+ + G + HF D + G ++ + GL P E
Sbjct: 764 ACVGQQM-VEGKRIAFGFADRSLPHFT------KDDFSPESKGFVENSYLRGLTPQEFFF 816
Query: 765 HSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 819
H+++ RE ++ ++ +E G + + L+ L D++V YDGT RN + IIQF YG
Sbjct: 817 HAMAGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGD-IIQFLYG 870
>D8RCH5_SELML (tr|D8RCH5) DNA-directed RNA polymerase (Fragment) OS=Selaginella
moellendorffii GN=SELMODRAFT_90820 PE=3 SV=1
Length = 510
Score = 192 bits (487), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 164/556 (29%), Positives = 255/556 (45%), Gaps = 80/556 (14%)
Query: 319 FISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLV-DENLCL 377
+SK + + + +++TGD Y + E+ IP EI++++T ERV N LQ +V D +CL
Sbjct: 1 ILSKMTQYCAIALLTGDAYLGVEEILIPDEISRQVTLPERVTGFNADKLQAIVNDLQVCL 60
Query: 378 A-----------YKEGV-----STYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPT 421
A Y+ G T LR S L+ G +VHR + DGD+VF++R P
Sbjct: 61 ACLYCFGFDFRKYQVGFIEQNGVTCDLRGQSAERRQLEIGAVVHRPVRDGDLVFVSRHPA 120
Query: 422 THKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEK 481
+KHS+ AL+ IH + +INPL+C PL DFDGD +H+++PQ+ A+ E EL +++
Sbjct: 121 VYKHSVIALIARIHPGKSFRINPLVCSPLKGDFDGDRLHVYFPQAEDARVETKELMGLKQ 180
Query: 482 QLLSSHXXXXXXXXXXXXXXXXXXXVKKG-FMDRAAANQMAMFLSL-PLPQPALLKAGSG 539
Q + V + F Q+A+ LP PA++K +
Sbjct: 181 QFQALSSGNPVISLTQDMLVAAYILVSRHIFFTAPQMQQLALHADRWSLPDPAIVKPLA- 239
Query: 540 DCYWTSTQILQCALP--LSFDCTGGRYLIRESDILGFDLGRDVLPAVINEIAASVFFGKG 597
WT Q LP L+F G LI + +++ L + + ++ G
Sbjct: 240 --LWTGFQAFGLLLPSELAFSTRTG-VLISDGELVTAGDDGSWLGGGTDSLLRAIHEKFG 296
Query: 598 PQEALNFFDVLQPFLMECIFSNGFSVGLHDFSISGAVKRITDRNIGKVSPLLYQLRFIYN 657
EA+ + D L E + GFS+GL DF++S DR +S LL + Y
Sbjct: 297 VAEAIGYLDSCCSMLKEFLHIEGFSIGLGDFNVS-------DRQREAISELLAYAKENYV 349
Query: 658 ELVAQQLEKHMQDIE-LPAIKFASKS---SRLGDMIDSKSKSALDKVTQQIGFLGQQLFV 713
E E+ +D+E +K +++ +RL M+ + SK + + LG Q+ V
Sbjct: 350 E------EQDFRDVERCLEVKIKNQTRRGNRLHMMMKAGSKGSASSARIHVACLGVQV-V 402
Query: 714 RGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIM 773
GR S F + F+ GLDP E HS+ TR +
Sbjct: 403 HGR-----------SEF------------------IDKSFWSGLDPSEFWQHSVCTRATL 433
Query: 774 VRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGLKAGDNASYLFPAG 833
++S + + GTL LM L DV + YDGTVR+ S ++Q YG ++ G
Sbjct: 434 LKSLT-MHDAGTLASTLMNHLEDVYLAYDGTVRHRQSEQVVQLVYGNESAQ-------PG 485
Query: 834 EHVGVLAATAMSNPAY 849
E VG LAA+ ++ AY
Sbjct: 486 EAVGALAASFITEQAY 501
>A1RWW5_THEPD (tr|A1RWW5) DNA-directed RNA polymerase OS=Thermofilum pendens
(strain Hrk 5) GN=Tpen_0285 PE=3 SV=1
Length = 888
Score = 191 bits (486), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 225/860 (26%), Positives = 350/860 (40%), Gaps = 149/860 (17%)
Query: 57 CESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKMK----------- 105
C++CG + C GHFGYIEL P+ HPS + +L C C ++K
Sbjct: 62 CQTCG-NRFTNCPGHFGYIELARPVIHPSFAPYIAILLKATCNRCGRLKLPEEKINKAKK 120
Query: 106 -----KTKFPSSSSGLAQRLL-----SPCCQEPNAAQVSIREVKTGDGACYLVLKVSKSK 155
K+PS + A LL + C A Q IR
Sbjct: 121 RMEVYSAKWPSLKTKYANTLLKEAAKATVCPHCGAPQYKIR------------------- 161
Query: 156 MQDGFWRFLDKYGYRYEV--DHTRALLPCEVMEMIKRFPLETKKKLAGKGYFPQDG---- 209
LDK YE + L P E+ E + R P + L G P++
Sbjct: 162 --------LDKPYTFYEEREEGLVKLTPLEIWERLSRIP---EGDLRVVGIDPKEARPEW 210
Query: 210 YVIKYLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEVIRSSRSGEPNFESHQVE 269
V++ +PV P + V++IR ++ + N ++
Sbjct: 211 MVLRVIPVVPPSVRPSITLESGDRSEDDLTHKL-------VDIIRVNQRLKENIDAGSPS 263
Query: 270 A------NDLQSVVDQYL--QIRGCAKPARDIETHFGVNKELSDASNKAWLDKMKSLFIS 321
N LQ V Y ++ G PAR G K + +
Sbjct: 264 LVIEDLWNLLQFHVATYFDNELPGIP-PARH---RSGRPLRTLAQRLKGKEGRFRGSLAG 319
Query: 322 KGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLV--------DE 373
K FSSR+VI+ D INEVG+P ++A+ +T E+V N+ L+KLV
Sbjct: 320 KRVDFSSRTVISPDPNLSINEVGVPIDVAKVLTVPEKVTPWNIEKLRKLVINGPDVWPGA 379
Query: 374 NLCLAYKEGVSTYSLR---EGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQAL 430
N + K S LR + LKPG IV R +MDGD+V NR P+ H+ S+ A
Sbjct: 380 NYII--KPDGSRIDLRYVKHREEISQTLKPGYIVERHLMDGDVVLFNRQPSLHRISIMAH 437
Query: 431 VVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHXXX 490
+V + T ++N L+ P ADFDGD ++L PQS A+AE EL V++ +++
Sbjct: 438 IVKVLPYKTFRLNLLVTIPYNADFDGDEMNLHVPQSEEARAEARELMLVQEHIMTPRYGA 497
Query: 491 XXXXXXXXXXXXXXXXVKK-GFMDRAAANQMAMFLSL--PLPQPALLKAGSGDCYWTSTQ 547
+K +D+ +A ++ + PL +PA++K G YWT Q
Sbjct: 498 PIIGGLHDYISGSYLLTRKDALLDKKSALRLLYIGNNCDPLVEPAIIKPGP---YWTGKQ 554
Query: 548 ILQCALPLSFDCTG-------------------GRYLIRESDIL--GFD---LGRDVLPA 583
I+ LP + G G LI++ +L FD +G +
Sbjct: 555 IVSMFLPKGLNYVGRASVAPASGKCDEEYCENDGYVLIKDGKLLLGVFDKQAIGAEKHGT 614
Query: 584 VINEIAASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHDFSISGA----VKRITD 639
V++EI G ++A D + + + +GF++G+ I ++ I
Sbjct: 615 VLHEIVREF----GVEKAKELMDGMFKVFIAYLDMHGFTMGVDSVEIPREAEDDIREILQ 670
Query: 640 RNIGKVSPLLYQ-----LRFIYNELVAQQLEKHMQDIELPAIKFASK--SSRLG------ 686
KV L+ Q L+ + + + LE + ++ A A + S LG
Sbjct: 671 EAEKKVEDLIRQYESGELQPMPGKTRKETLEDLIMNVLAEARTRAGEVTSKHLGLLNHAV 730
Query: 687 DMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEY 746
M + ++ ++ +TQ +GQQ VRG+ +G HF GD P A+
Sbjct: 731 IMAKTGARGSMLNLTQMAAVVGQQ-SVRGKRIERGYTGRALPHF-----VKGDLSPLAK- 783
Query: 747 GLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVR 806
G + F GL P E H+IS RE +V ++ ++ G +++ L + ++D V YDGTVR
Sbjct: 784 GFVYSSFRRGLSPVEFFFHAISGREGLVDTAVRTAQSGYMYRRLQSAMQDFYVSYDGTVR 843
Query: 807 NVCSNSIIQFEYGLKAGDNA 826
N IIQF YG + D A
Sbjct: 844 N-SEGMIIQFRYGEDSVDPA 862
>B6H9U6_PENCW (tr|B6H9U6) DNA-directed RNA polymerase OS=Penicillium chrysogenum
(strain ATCC 28089 / DSM 1075 / Wisconsin 54-1255)
GN=Pc16g13990 PE=3 SV=1
Length = 1733
Score = 190 bits (483), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 219/881 (24%), Positives = 353/881 (40%), Gaps = 144/881 (16%)
Query: 45 NPFLGLPLEYGRCESCGTSEAG--KCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCL 102
+P LG CE+C E G +C GHFG+IEL P++H ++++KK+L VC NC
Sbjct: 57 DPRLGTIDRQYNCETC---EEGPKECPGHFGHIELASPVFHIGFLTKIKKLLETVCHNCG 113
Query: 103 KMKKTKFPSSSSGLAQRLLSP----------------CCQEPNA---------------- 130
K+K S + A R P C + A
Sbjct: 114 KIKANTADSKFTE-ALRFRDPKRRFDAIWRLSKDVLVCEADAPADDEEFSKESQKGRSHG 172
Query: 131 ----AQVSIREVKTGDGACYL-VLKVSKSKMQDGFWRFLDKYGYRYEVDHTRALLPCEVM 185
AQ ++R+ +G C + K SK+ M+D + + + P +
Sbjct: 173 GCGNAQPTVRK----EGICLVGTWKPSKAMMEDEMAQ-----------PEKKVITPTMAL 217
Query: 186 EMIKRFPLETKKKLA-GKGYFPQDGYVIKYLPVPPNCLXXXXXXXXXXXXXXXXXXTF-L 243
+ + +E + + Y + ++ LPVPP + T+ L
Sbjct: 218 NIFRNISVEDVRIMGLSNDYARPEWMILTVLPVPPPTVRPSVVMGTTSGARGEDDLTYKL 277
Query: 244 RKLLRKVE-VIRSSRSGEPNFESHQVEANDLQSVVDQYLQIRGCAKPARDIETHFGVNKE 302
+++R + V R + G P + E+ LQ + Y+ +P + + V
Sbjct: 278 AEIVRANQNVQRCEQEGAPEHVIREFESL-LQYHIATYMDNDIAGQPTAMQKGNRPVKAL 336
Query: 303 LSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSH 362
S K +++ + K FS+R+VITGD R++EVG+P+ A+ +T+ E V +
Sbjct: 337 RSRLKGKE--GRLRQNLMGKRVDFSARTVITGDPNLRLDEVGVPYSTARILTYPEVVTPY 394
Query: 363 NMCYLQKLVDENLCL------AYKEGVSTYSLREGSK-GHTYLKPGQIVHRRIMDGDIVF 415
N+ LQ+LV L ++ LR + G L G V R + DGD +
Sbjct: 395 NIEKLQRLVANGPNLHPGARYIVRDNGERIDLRHAKRAGAQQLLYGWKVERHLDDGDYIL 454
Query: 416 INRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVE 475
NR P+ HK S+ V + T ++N + P ADFDGD ++L PQ ++AE+ E
Sbjct: 455 FNRQPSLHKESMMGHRVRVMPFSTFRMNLSVTSPYNADFDGDEMNLHVPQGEESRAELAE 514
Query: 476 LFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKK-GFMDRAAANQMAMFLSLP-----LP 529
L V K ++S ++ F+ + M + L +P +P
Sbjct: 515 LTLVPKNIVSPQRNGPLMGIVQDTLCGIYKICRRDTFLTKDQV--MNLMLWVPDWDGAIP 572
Query: 530 QPALLKAGSGDCYWTSTQILQCALP-----LSFDCTG------------GRYLIRESDIL 572
PA++K WT Q++ A P L D G G LI ++
Sbjct: 573 PPAIIKP---RPRWTGKQMISMAFPSGLNLLRVDKDGSPLSEKFSPLNDGGLLIHGGQLM 629
Query: 573 GFDLGRDVLPAVINEIAASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHDFSISG 632
L + + A + ++F GP + FF Q + + NGFS+G+ D
Sbjct: 630 YGMLSKKTVGASGGGVIHTIFNEYGPDTCVKFFTGAQTIVGYWLLHNGFSIGIGD----- 684
Query: 633 AVKRITDR-NIGKVSPLLYQLRFIYNELVAQQLEKHMQDIELPAIK----FASKSSR--- 684
I D+ I K+ + + E+ A E ++ LP + F SK SR
Sbjct: 685 ---TIPDQLTINKIEEAVRNRKQEVEEITASATENTLE--ALPGMNVRETFESKVSRALN 739
Query: 685 -----LGD--------------MIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLED 725
GD M S SK + ++Q +GQQ V G+ G
Sbjct: 740 NARDEAGDATEKSLKDLNNAIQMARSGSKGSAINISQMTALVGQQ-SVEGKRIPFGFKYR 798
Query: 726 VASHFKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGT 785
HF D Y G ++ + GL P E H+++ RE ++ ++ +E G
Sbjct: 799 TLPHFT------KDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGY 852
Query: 786 LFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGLKAGDNA 826
+ + L+ L +V+V YDGTVRN + IIQF YG D A
Sbjct: 853 IQRKLVKALEEVMVKYDGTVRNSLGD-IIQFIYGEDGLDGA 892
>B7PVV6_IXOSC (tr|B7PVV6) DNA-directed RNA polymerase OS=Ixodes scapularis
GN=IscW_ISCW008476 PE=3 SV=1
Length = 1394
Score = 190 bits (483), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 214/876 (24%), Positives = 353/876 (40%), Gaps = 137/876 (15%)
Query: 48 LGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKMKKT 107
LG + +CE+CG A C GH+G ++L +P++H + + +L VC C ++
Sbjct: 60 LGTSQKDKKCETCGKGLA-DCIGHYGLVDLELPVFHVGYFRATQNILHCVCKTCARVLVP 118
Query: 108 KFPSSSSGLAQRLLSPCCQ--EPNAAQVSIREVKTGDGACYL------------VLKV-- 151
P G L P + A I E AC+ +LK+
Sbjct: 119 --PQERQGFLDALQRPTLSYLQKKALHKKIIERCRKQSACHFCGARNGQVKKCGLLKLVH 176
Query: 152 ---SKSKMQDGFW-RFLDKY----GYRYEVDHTRA------LLPCEVMEMIKRF-----P 192
+K D FL+ + GY E+D L P V+ + +R P
Sbjct: 177 ERFKATKKNDAMLAEFLEDFDEARGYNPELDSVMGKVTSDILNPLVVLHLFRRILDEDVP 236
Query: 193 LETKKKLAGKGYFPQDGYVIKYLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEV 252
L G+ P+D ++ +PVPP C+ L +++ +V
Sbjct: 237 LLVMNPKCGR---PED-LILTRIPVPPLCIRPSVVSELKAGTNEDDVTVKLTEIIFLNDV 292
Query: 253 IRSSRSGEPNFESHQVEANDLQSVVDQ--YLQIRGCAKPARDIETHFGVNKELSDASNKA 310
I + H+ +Q +++ +LQ++ CA + +N + +
Sbjct: 293 I----------QRHRASGAKMQMIMEDWDFLQLQ-CALYVNSETSGIPLNMQ-PKKPTRG 340
Query: 311 WLDKMKS---LFISKGSG----FSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHN 363
++ ++K F SG FS R+VI+ D RI++VG+P +A+ +T+ ERV HN
Sbjct: 341 FVQRLKGKHGRFRGNLSGKRVDFSGRTVISPDPNLRIDQVGVPVHVAKILTYPERVTQHN 400
Query: 364 MCYLQKLVDE--------NLCLAYKEGVSTYSLREGSKG--HTYLKPGQIVHRRIMDGDI 413
+ ++ LV N + G Y LR G++ L+PG +V R + DGD+
Sbjct: 401 LALMRTLVRNGPDVHPGANFLESRDSGFKRY-LRYGNRDLLAQQLRPGDVVERHLRDGDV 459
Query: 414 VFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEV 473
V NR P+ HK S+ A + + T + N +C P ADFDGD ++L PQ+ A+AE
Sbjct: 460 VLFNRQPSLHKLSIMAHLAKVLPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEARAEA 519
Query: 474 VELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKKG-FMDRAAANQMAMFL-------- 524
+ L L++ ++ F DRA A Q+A ++
Sbjct: 520 LVLMGTRANLVTPRNGEPLIAAIQDFITGGYLLTQRDVFFDRAKAAQLAAYMLAGKDVSI 579
Query: 525 SLPLPQPALLKAGSGDCYWTSTQIL--------QCALPLSFDCTGGRY------------ 564
S+ LP PA+ K C WT QI C + S G Y
Sbjct: 580 SVELPPPAIRKP---VCLWTGKQIFSLIIRPSRSCPVLASLRAKGKSYTSGEEMCANDAY 636
Query: 565 -LIRESDILGFDLGRDVL-PAVINEIAASVFFGKGPQEALNFFDVLQPFLMECIFSNGFS 622
LIR S++L + + + N I + G Q A + L + + GFS
Sbjct: 637 VLIRNSELLSGTMDKGTMGSGSKNNIFYILLRDYGDQYAADAMWRLARIASFYMQNRGFS 696
Query: 623 VGLHDFSISGAVKR----ITDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQDIELPAIKF 678
+G+ D + + + + + + QL+ +L AQ + +E ++K
Sbjct: 697 IGIGDVTPGAGLLKAKHDLVSEGYARCEEYIQQLKC--GKLQAQPGCNEEETLEAVSLKE 754
Query: 679 AS---------------KSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLL 723
S K++ M SK + ++Q I +GQQ + G G
Sbjct: 755 LSVVRDHAGKACLRELHKTNSPLIMAVCGSKGSFINISQMIACVGQQA-ISGHRVPNGFE 813
Query: 724 EDVASHFKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEP 783
+ HF+ D P A G ++ F+ GL P E H++ RE +V ++ +E
Sbjct: 814 DRSLPHFE-----RNDRTPQAR-GFVEDSFYSGLTPTEFFFHTMGGREGLVDTAVKTAET 867
Query: 784 GTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 819
G + + L+ L D+ YD TVRN C + I+QF YG
Sbjct: 868 GYMQRRLVKSLEDLCSHYDMTVRNSCGD-IVQFCYG 902
>B9GKP9_POPTR (tr|B9GKP9) DNA-directed RNA polymerase OS=Populus trichocarpa
GN=NRPD901 PE=3 SV=1
Length = 1517
Score = 190 bits (482), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 174/622 (27%), Positives = 283/622 (45%), Gaps = 65/622 (10%)
Query: 668 MQDIELPAIKFASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVA 727
+DI+ K+AS+ + M + SK L K+ Q LG Q + + A
Sbjct: 762 FRDIQSLVYKYASQDNSFLAMFKAGSKGNLLKLVQHSMCLGLQHALASLSFRIPHQLSCA 821
Query: 728 SHFKLKCDYDGDGYPSAE----YGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEP 783
K K D D SA+ + +++G F GL+P E VHS+++R+ + L P
Sbjct: 822 GWNKQKAD---DATESAKRYIPHAVVEGSFLSGLNPIECFVHSVTSRDSSFSDNADL--P 876
Query: 784 GTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGLKAGDNASYLFP-------AGEHV 836
GTLF+ +M +RD+ YDGTVRN N ++QF Y + D + + AG V
Sbjct: 877 GTLFRRMMFFMRDLHGAYDGTVRNAYGNQLVQFSYNIDDMDPSGSVDEINNSDGIAGRPV 936
Query: 837 GVLAATAMSNPAYKAV------LDASPSSNCSWELMKEILLCKVHFRNEPIDRRVILYLN 890
G LAA A+S AY A+ L+ SP N +K +L C + + + + L+L+
Sbjct: 937 GPLAACAISEAAYSALDQPISLLEKSPLLN-----LKNVLECGL--KRNSAHQTMSLFLS 989
Query: 891 DCDCGRSYCRENAAYAVKNQLRKVSLKDTAVDFIVEYQQQRKRKGSEIDAGLVGHIHL-- 948
+ + + E AA V+N L ++ D + + Q G + V H H+
Sbjct: 990 EKLGRQRHGFEYAALEVQNHLERLLFSDIVSFVRIIFSPQSD--GRMHFSPWVCHFHVYK 1047
Query: 949 DEVKLEELKINMAEVFQRCQEKLDSFNRKRKFNQIFKRTELFFSESCVSPNFSAP----C 1004
+ VK LK++ +D+ ++ K F + ++ V+ + C
Sbjct: 1048 EIVKKRSLKVHYI---------IDALEKQCKSKTRFPKVQITSRYCTVADTWKEKKETFC 1098
Query: 1005 LTFIWPAGDGNDLHETTKILADTICPALLDTIIQGDPRINSANIIWVN----PDTNTWVR 1060
+T N+ E I D + P LL+T+I+G I +I+W + P ++ +R
Sbjct: 1099 ITVTIVETSKNEFIELETI-QDLMIPFLLETVIKGFMEIQKVDILWNDKPKIPKSHNRLR 1157
Query: 1061 NPSKSSNGELALDIILEKESIKQNGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQIQELLG 1120
GEL L + + + S K W ++D CL ++ LID RS P I + G
Sbjct: 1158 -------GELFLRVHMSRGSDKTR--LWNQLMDDCLSIMDLIDWARSHPDNIHECCLAYG 1208
Query: 1121 ISCTFDQAIQRLAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQV 1180
I + + L +++ V K VL EHL+L+A+ ++ G VG N G K ++
Sbjct: 1209 IDAGWKFFLNNLQSAMSDVGKTVLPEHLLLVANCLSVTGEFVGLNAKGLKRQREHASVST 1268
Query: 1181 PFTDATLFTPKRCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSKFDVLWDAKEIKSND 1240
PF A P CF RAA+ D L + + +WGK A+GTG +FD+++ K ++ +
Sbjct: 1269 PFVQACFSNPGDCFIRAAKAGVVDDLQGSIDALAWGKVPAIGTG-QFDIVYSGKGLEFS- 1326
Query: 1241 LDGMDVYNFL--HMVKSLTNGE 1260
+DVYN L M+ + N E
Sbjct: 1327 -KPVDVYNLLGSQMISTEQNTE 1347
Score = 132 bits (333), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 99/346 (28%), Positives = 161/346 (46%), Gaps = 31/346 (8%)
Query: 300 NKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERV 359
N +++AS W+ K + + K + S R VI GD + +++E+GIP IA+R+ E +
Sbjct: 337 NDYVNNASGLRWI---KDVVLGKRNDHSFRMVIVGDPHLQLHEIGIPCHIAERLQISESL 393
Query: 360 NSHNMCYLQKLVDENLCLAYKEGVSTYSLREGS----KGHTYLKPGQIVHRRIMDGDIVF 415
+ N L +++ +++G + REG+ + L+ G I++R + DGD V
Sbjct: 394 TAWNWEKLNACFEKS---RFEKG-DMHVRREGNLVRVRHMKELRLGDIIYRPLNDGDTVL 449
Query: 416 INRPPTTHKHSLQALVVYIHDDHTV-KINPLICGPLGADFDGDCVHLFYPQSLAAKAEVV 474
INRPP+ H+HSL AL V + +V INPL C P ADFDGDC+H + PQS+ + E+
Sbjct: 450 INRPPSIHQHSLIALSVKVLPVPSVLAINPLCCPPFRADFDGDCLHGYVPQSVDTRVELT 509
Query: 475 ELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKKG-FMDRAAANQMAMFLSLPLPQPAL 533
EL S++KQL + ++ F+ Q+ MF PA+
Sbjct: 510 ELVSLDKQLTNWQSGRNLLSLSQDSLTAAHLVLEDDVFLSSFELQQLQMFRPERFLLPAV 569
Query: 534 LKAGSGDCYWTSTQILQCALPLSF--DCTGGRYLIRESDILG-------FDLGRDVLPAV 584
+ WT Q++ LP+ F D IR+ D++ +D ++ ++
Sbjct: 570 KAPSANALVWTGKQLISMLLPVGFDHDFPSCNVCIRDGDLVSSEGSFWLWDTDGNLFQSL 629
Query: 585 INEIAASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHDFSI 630
+ V L+F Q L E + G SV L D +
Sbjct: 630 VKHCHGQV---------LDFLYAAQRVLCEWLSMRGLSVSLSDLYL 666
>A1YIA8_9ASCO (tr|A1YIA8) DNA-directed RNA polymerase (Fragment) OS=Taphrina
deformans GN=RPB1 PE=3 SV=1
Length = 1001
Score = 190 bits (482), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 219/862 (25%), Positives = 353/862 (40%), Gaps = 130/862 (15%)
Query: 74 YIELPVPIYHPSHVSELKKMLSLVCLNCLKMK----KTKFPSSSSGLAQRLLSPCCQEPN 129
+IEL P++H ++++KKML +C NC K+K KF + QR P +
Sbjct: 1 HIELAKPVFHIGFITKVKKMLECICWNCGKLKIDANDPKFAET-----QRFRDPKVKMNA 55
Query: 130 AAQVS---------------------IREVKTGDGAC---YLVLKVSKSKMQDGFWRFLD 165
Q++ I K+ G C V++ K+ + + D
Sbjct: 56 VWQLAKMKMICESDVKGEGSIDTETGIDMSKSNHGGCGNAQPVIRKEGLKLWGTWKKSKD 115
Query: 166 KYGYRYEVDHTRALLPCEVMEMIKRFP-LETKKKLAGKGYFPQDGYVIKYLPVPPNCLXX 224
G E R L P EV + + P ++ + + Y D +I LPVPP +
Sbjct: 116 VEGGEPE---RRLLTPMEVHSVFRHIPSVDLVRMGLSENYARPDWMIITVLPVPPPTVRP 172
Query: 225 XXXXXXXXXXXXXXXXTFLRKLLR-KVEVIRSSRSGEPNFESHQVEANDLQSVVDQYL-- 281
L +++ V + G P + E + LQ V Y+
Sbjct: 173 SVEQGGMKSHDDLTYK--LADIIKANANVKKGEVEGAPAHVIKEFE-DLLQYHVATYMDN 229
Query: 282 ----QIRGCAKPARDIETHFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGY 337
Q + K R I++ A K +++ + K FS+R+VITGD
Sbjct: 230 DIAGQPKALQKSGRAIKS--------IRARLKGKEGRLRGNLMGKRVDFSARTVITGDPN 281
Query: 338 KRINEVGIPHEIAQRITFEERVNSHNMCYLQKLV----DENLCLAY--KEGVSTYSLR-E 390
++EVG+P IA+ +T+ ERV N+ LQ+LV DE+ Y ++ LR
Sbjct: 282 LSLDEVGVPRSIARTLTYPERVTPFNIHKLQQLVRNGPDEHPGAKYILRDTGERIDLRYN 341
Query: 391 GSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPL 450
+ G T L+ G V R + +GD+V NR P+ HK S+ V + T ++N + P
Sbjct: 342 KNAGDTPLQYGWTVERHLQNGDVVIFNRQPSLHKMSMMGHRVRVMPYSTFRLNLSVTSPY 401
Query: 451 GADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHXXXX-XXXXXXXXXXXXXXXVKK 509
ADFDGD ++L PQS +AE+ E+ V +Q+L+ ++
Sbjct: 402 NADFDGDEMNLHVPQSEETRAEITEICMVPRQILAPQANKPCMGIVQDALCGIRKFTIRD 461
Query: 510 GFMDRAAANQMAMFLSLP-----LPQPALLKAGSGDCYWTSTQILQCALPLSFDCTGGRY 564
FM A ++ M + + +P +P PA+LK WT QIL +P + +
Sbjct: 462 TFM--AKSHVMNILMWVPGWNGIVPPPAILKPQQ---LWTGKQILSMVIPKGINHS---- 512
Query: 565 LIRESDILGFDLGRDV---------LPAVINE---------IAASVFFGKGPQEALNFFD 606
R D G D DV L V+N+ + + KG + +FF
Sbjct: 513 --RNDDKQGLDNPNDVGMMIEDGEILYGVVNKKTVGSSQGGLIHIIMKEKGWEACRDFFT 570
Query: 607 VLQPFLMECIFSNGFSVGLHDF--------SISGAVKR--------ITDRNIGKV--SPL 648
Q + NGFS+G+ D I+ + + ++D + K+ P
Sbjct: 571 ATQMVVNYWFLHNGFSIGIGDTIADRQTMEEITNEIAKAKLKVQGIVSDAQLNKLKQEPG 630
Query: 649 LYQLRFIYNELVAQQLEKHMQDIELPAIKFASKSSRLGDMIDSKSKSALDKVTQQIGFLG 708
+ LR + V+Q L + A SK + + M+ + SK + ++Q +G
Sbjct: 631 M-TLRESFEAGVSQVLNGARDTVGKNAESSLSKQNAVKQMVIAGSKGSFINISQMSACVG 689
Query: 709 QQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSIS 768
QQ+ V G+ G HF D Y G ++ + GL P E H+++
Sbjct: 690 QQM-VEGKRIPYGFKFRTLPHFT------KDDYSPESRGFVENSYLRGLTPQEFFFHAMA 742
Query: 769 TREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGLKAGDNASY 828
RE ++ ++ +E G + + L+ L DV V YDGTVRN + II F YG D AS
Sbjct: 743 GREGLIDTAVKTAETGYIQRRLVKALEDVGVKYDGTVRNSLGD-IINFVYGEDGLDAASV 801
Query: 829 LFPAGEHVGVLAATAMSNPAYK 850
+ VL +SN A++
Sbjct: 802 EYQ------VLDTMRLSNAAFE 817
>M5FQ84_DACSP (tr|M5FQ84) Subunit of DNA dependent RNA-polymerase OS=Dacryopinax
sp. (strain DJM 731) GN=DACRYDRAFT_118311 PE=4 SV=1
Length = 1770
Score = 189 bits (481), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 193/849 (22%), Positives = 345/849 (40%), Gaps = 110/849 (12%)
Query: 56 RCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKMKKTKFPSSSSG 115
+C++CG G C GHFG+IEL P+YH + ++KK+L +C+NC K+K +
Sbjct: 70 KCQTCGEG-PGDCPGHFGHIELARPVYHAGFLVKVKKILECICVNCGKLKADIGDDTFRV 128
Query: 116 LAQRLLSP---------------CCQEPNAAQVSIREV---KTGDGACYLVLKVSKSKMQ 157
L +R +P C+ + + K G C + + + +
Sbjct: 129 LVKRADNPKRRLQIVWEYCKGKMLCESDDMKEEEEDPEKPQKPSHGGCGHIQPLIR---K 185
Query: 158 DGFWRFL---------DKYGYRYEVDHTRALLPCEVMEMIKRFPLETKKKLA-GKGYFPQ 207
DG FL D + R L E ++++ P + + + Y
Sbjct: 186 DGLKLFLVYKKRKGDDDDEDVKLAQPEKRLLTAAEAHSILRKIPTSDLRLMGLSERYARP 245
Query: 208 DGYVIKYLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEVIRSSRS-GEPNFESH 266
+ ++ +PVPP + L +L+ +R + G P
Sbjct: 246 EWMILSVIPVPPPQVRPSIMSDSLRSEDDLTYK--LADILKTSATLRKHDAEGAPAHVVS 303
Query: 267 QVEANDLQSVVDQYL------QIRGCAKPARDIETHFGVNKELSDASNKAWLDKMKSLFI 320
++E LQ V Y+ Q R K R ++ + L K +++ +
Sbjct: 304 EIE-QLLQFHVATYMDNEIAGQPRAMQKSGRPVK---AIRSRL-----KGKEGRLRGNLM 354
Query: 321 SKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLVDENLCLAYK 380
K FS+R+VITGD ++EVG+P IA +T+ ERV +N+ L +LV N + Y
Sbjct: 355 GKRVDFSARTVITGDPNIALDEVGVPRSIAMTLTYPERVTKYNLERLTELV-RNGPVEYP 413
Query: 381 EGVSTYSLREGS--------KGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALVV 432
+ Y +R+ +G L+ G +V R + DGD V NR P+ HK S+ + V
Sbjct: 414 G--ARYIIRDTGERIDLRYKRGDVSLQIGWVVERHLRDGDYVLFNRQPSLHKMSMMSHRV 471
Query: 433 YIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHXXXXX 492
+ T ++N + P ADFDGD ++L PQS +AE+ E+ V +Q++S
Sbjct: 472 RVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELKEIAWVPRQIVSPQANKPV 531
Query: 493 XXXXXXXXXXXXXXVKKG-FMDRAAANQMAMFLS---LPLPQPALLKAGSGDCYWTSTQI 548
++ F+D + +++ +P P ++K W+ QI
Sbjct: 532 MGIVQDTLCGIYKMTQRDIFLDWPLVQNILLWVPDWDGTIPHPCIIKP---KPMWSGKQI 588
Query: 549 LQCALPLSFDCTGGR-----------YLIRESDILGFDLGRDVLPAVINEIAASVFFGKG 597
+ +P + G +I +I+ + ++ + + VF +G
Sbjct: 589 IALVIPQGINLANGNLSIGNPINDDALIIENGEIMMGIFNKGIVGSSAGGLIHVVFRERG 648
Query: 598 PQEALNFFDVLQPFLMECIFSNGFSVGLHDFSISGAVKRITDRNIGKVSPLLYQLRFIYN 657
P+ + +Q + +F NGFS+G+ D ++ NI +R +
Sbjct: 649 PEVTRDMIGGIQTVVNYWLFHNGFSIGIGDTVPDKPTEKSIMTNIETAK---EDVRKVVE 705
Query: 658 ELVAQQLEKH----------------MQDIELPAIKFASKSSR----LGDMIDSKSKSAL 697
E V L+ + + + K A +S + + M+ + SK +
Sbjct: 706 EAVKGLLKPRPGMTIRESFEASVNGILNQVRDKSGKSAQQSLKRDNNVKTMVTAGSKGSF 765
Query: 698 DKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGCFFHGL 757
++Q +GQQ V G+ G HF D + G ++ + GL
Sbjct: 766 INISQMSAMVGQQ-NVEGQRIPFGFKHRTLPHFT------KDDFSPESRGFVENSYLRGL 818
Query: 758 DPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFE 817
P E H+++ RE ++ ++ +E G + + L+ + DV+V YDGT+RN + ++Q+
Sbjct: 819 TPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKAMEDVMVAYDGTIRNSLGD-VLQWT 877
Query: 818 YGLKAGDNA 826
YG D A
Sbjct: 878 YGEDGMDAA 886
>A5AJJ3_VITVI (tr|A5AJJ3) Putative uncharacterized protein OS=Vitis vinifera
GN=VITISV_018848 PE=4 SV=1
Length = 438
Score = 189 bits (479), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 96/149 (64%), Positives = 115/149 (77%), Gaps = 6/149 (4%)
Query: 722 LLEDVASHFKLKCDYDGDG--YPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRG 779
+L DV + + D +G + A+ ++ F+ P+EE+VHSISTREI+VRSSRG
Sbjct: 274 VLLDVYKEIEEEMDKEGKANCFHYAKEAIMPMYFY----PYEEMVHSISTREIIVRSSRG 329
Query: 780 LSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGLKAGDNASYLFPAGEHVGVL 839
LSEP TL KNLMAILRDVV+CYDGTVRNVCSNSIIQFEYG+K N FPAGE VGVL
Sbjct: 330 LSEPRTLSKNLMAILRDVVICYDGTVRNVCSNSIIQFEYGVKTRINPQRFFPAGELVGVL 389
Query: 840 AATAMSNPAYKAVLDASPSSNCSWELMKE 868
AATAMSNPAYKAVLD+SPS+N SWEL+++
Sbjct: 390 AATAMSNPAYKAVLDSSPSNNSSWELIRK 418
>D9Q2P3_ACIS3 (tr|D9Q2P3) DNA-directed RNA polymerase OS=Acidilobus
saccharovorans (strain DSM 16705 / VKM B-2471 / 345-15)
GN=ASAC_1176 PE=3 SV=1
Length = 889
Score = 189 bits (479), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 222/834 (26%), Positives = 348/834 (41%), Gaps = 108/834 (12%)
Query: 56 RCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKMKKTKFPSSSS- 114
RC CG + C GHFG I+L P+ P ++ ++L C +C + P +
Sbjct: 65 RCPVCGNTRQ-DCPGHFGKIDLARPVVLPHLGDKIYQLLQSTCRSC---GRILIPPQKAA 120
Query: 115 ---GLAQRLLS--PCCQEPNAAQVSIREVKTGDGACYLVLKVSKSKMQDGFWRFLDKYGY 169
G+ +RL P + +V I+E + + K K K F+ Y +
Sbjct: 121 YMLGIYRRLREKWPLLADIFVEEV-IKEASSATECPHCGAKQYKIK-------FIKPYNF 172
Query: 170 RYEV--DHTRALLPCEVMEMIKRFPLETKKKLAGKGYFPQDGY----VIKYLPVPPNCLX 223
YEV + L P +V E +++ P + + L G+ P+ V+ LPVPP +
Sbjct: 173 -YEVRPEGEVRLTPSDVRERLEKIPDDDVELL---GWDPKSARPEWAVLTVLPVPPLSVR 228
Query: 224 XXXXXXXXXXXXXXXXXTFLRKLLRKVEVIRSSRSGEPNFESHQVEA-NDLQSVVDQYLQ 282
L +++R+ E +++ S ES EA LQ+V+ Y+
Sbjct: 229 PSITMESGSRAEDDLTHA-LAEIVRQNERLKNFISSSAP-ESMIEEAWQALQNVIAAYID 286
Query: 283 IRGCAKPARDIETHFGVNKELSDASN--KAWLDKMKSLFISKGSGFSSRSVITGDGYKRI 340
P +H G K+L + K +++ K FSSR+VI+ D I
Sbjct: 287 ---NELPNIYQLSHRG-RKQLKTLAQRLKGKEGRLRGNLNGKRVNFSSRTVISPDPLISI 342
Query: 341 NEVGIPHEIAQRITFEERVNSHNMCYLQKLVDENLCLAYKEGVSTYSLREGSKGHTY--- 397
NEVG+P E+A+ +T V N+ +K V N + Y REG K
Sbjct: 343 NEVGVPIEVAKILTVPMVVTKFNIEEARKYV-LNGPYQWPGATIVYKKREGVKLDLRYQR 401
Query: 398 --------LKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGP 449
L+ G IV R ++DGDIV NR P+ H+ S+ V + T ++N L+C P
Sbjct: 402 NLRQLAESLEVGDIVERHLIDGDIVLFNRQPSLHRMSIMGHKVRVMPGRTFRLNLLVCAP 461
Query: 450 LGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSS-HXXXXXXXXXXXXXXXXXXXVK 508
ADFDGD ++L P+ A+AE + L VE +L+ + VK
Sbjct: 462 YNADFDGDEMNLHVPRLEEARAEALNLLLVENHILTPRYGGPIIGGRQDYISGAYLLTVK 521
Query: 509 KGFMDRAAANQM--AMFLSLPLPQPALLKAGSGDCYWTSTQILQCALPLSFDCTG----- 561
DR A ++ A S LP+PA+LK WT Q++ LP F+ +G
Sbjct: 522 TTLFDREAVGRLLAAASYSGELPEPAILKPRP---LWTGKQLVSLFLPSDFNFSGRAKIN 578
Query: 562 --------------GRYLIRESDILG--FD---LGRDVLPAVINEIAASVFFGKGPQEAL 602
+IR +L FD +G + +V++ IA G A
Sbjct: 579 AGDLKCDGEDCFFDSYVVIRRGRLLEGVFDKNTIGAEQPESVLHYIALEY----GNAAAR 634
Query: 603 NFFDVLQPFLMECIFSNGFSVGLHDFSIS----GAVKRITDRNIGKVSPLLYQLRFIYNE 658
D + + + GFS+ + D I + ++T+ V L+ Q R E
Sbjct: 635 QLLDTMYRMFIRMLELRGFSISISDIEIPKEARDKIAKMTEEAKEDVMKLIEQYRNGTLE 694
Query: 659 LVA-------------QQLEKHMQDIELPAIKFASKSSRLGDMIDSKSKSALDKVTQQIG 705
++ Q+L+K D AI + + + M + ++ + +TQ
Sbjct: 695 IIPGRTLEESLELKIIQRLQKLRDDAGKTAIGYMNPFNNAFIMARTGARGSDINITQMAA 754
Query: 706 FLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVH 765
LGQQ VRGR +G HF+ GD P A G + F GL P E H
Sbjct: 755 MLGQQT-VRGRRIVRGFRTRTLPHFR-----PGDLSPEAR-GFVVSNFRDGLKPHEVFFH 807
Query: 766 SISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 819
+ RE +V ++ S+ G + + L+ L+D+ V YDGTVR+ ++IIQF YG
Sbjct: 808 AAGGREGLVDTALKTSQSGYMQRRLINALQDLHVAYDGTVRD-SQDNIIQFRYG 860
>I2GVL8_TETBL (tr|I2GVL8) DNA-directed RNA polymerase OS=Tetrapisispora blattae
(strain ATCC 34711 / CBS 6284 / DSM 70876 / NBRC 10599 /
NRRL Y-10934 / UCD 77-7) GN=TBLA0A03720 PE=3 SV=1
Length = 1458
Score = 188 bits (478), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 212/869 (24%), Positives = 346/869 (39%), Gaps = 125/869 (14%)
Query: 57 CESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKM-----KKTKFPS 111
CE+C + A C GHFG+I+L +P++H + ++L +C +C + K F S
Sbjct: 67 CETCHGNLAS-CHGHFGHIKLALPVFHVGYFKATIQILQAICKSCAAVLLSDEDKRNFLS 125
Query: 112 S----------SSGLAQRLLSPC-----CQEPNAAQVSIREVKTGDGACYLVLK------ 150
G+ +++L C C +++ G G+ L +
Sbjct: 126 ELRRPGIDNLKRMGILKKILDQCKKQRRCLHCGGLNGVVKKAAAGGGSASLKIIHDTFRW 185
Query: 151 VSKSKMQD-----GFWRFLDKYGYRYEVDHTRA---LLPCEVMEMIKRFPLETKKKLA-- 200
V K + + G W+ + + E RA L P + + + K+ E + L
Sbjct: 186 VGKKQTPEKDSWVGDWQEVLSHNPELERFVKRAMDDLNPLKTLNLFKQIKPEDCELLGID 245
Query: 201 --GKGYFPQDGYVIKYLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEVIRSSRS 258
K P+ Y+ +YLP PP C+ L +++ +I++
Sbjct: 246 STSKSGRPET-YIWRYLPAPPVCIRPSVMMQDSPASNEDDLTVKLTEVVWTSSLIKAGLE 304
Query: 259 GEPNFESHQVEANDLQSVVDQYLQ-------IRGCAKPARDIETHFGVNKELSDASNKAW 311
+ + + LQ V Y+ + A ++ G + L K
Sbjct: 305 KGISINNMMEHWDYLQLSVAMYINSDSVNPLLMPGASTGNKVKPIRGFCQRL-----KGK 359
Query: 312 LDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLV 371
+ + K FS R+VI+ D I+EV +P +A+ +TF ERV +N LQ LV
Sbjct: 360 QGRFRGNLSGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTFPERVTRYNKRKLQALV 419
Query: 372 --DENL-----CLAYKEGVSTYSLREGSKGHTY--LKPGQIVHRRIMDGDIVFINRPPTT 422
N+ L K+ + +LR G K L+ G +V R + DGD+V NR P+
Sbjct: 420 LNGPNVHPGANYLLKKDEEARRNLRYGDKVKLAKNLQIGDVVERHLEDGDVVLFNRQPSL 479
Query: 423 HKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQ 482
H+ S+ + I T ++N +C P ADFDGD ++L PQ+ A+AE + L V+
Sbjct: 480 HRLSILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNN 539
Query: 483 LLSSHXXXXXXXXXXXXXXXXXXXVKK-GFMDRAAANQMAMF-----LSLPLPQPALLKA 536
LL+ K F DRA Q+ L +P PA++K
Sbjct: 540 LLTPKSGEPIIAATQDFITGSYLISHKDSFFDRATFTQLLSMMCDGNLQFDIPPPAIMKP 599
Query: 537 GSGDCY-WTSTQILQC---------------------------ALPLSFDCTGGRYLIRE 568
CY WT Q+ +LP G +IR
Sbjct: 600 ----CYLWTGKQLFSLLIKPNSNSPVVINVDAKNKVFKPPKDKSLPSEMSPNDGFVVIRG 655
Query: 569 SDILGFDLGRDVL-PAVINEIAASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHD 627
S IL + + VL + + ++ GPQEA + + + + GFS+G++D
Sbjct: 656 SQILSGVMDKSVLGDGKKHSVFYTILRDYGPQEAATAMNRMAKLCARFLGNRGFSIGIND 715
Query: 628 FSISGAVKRITDRNIGKVSPLLYQLRFIYNE--LVAQQLEKHMQDIELPAIKFASK-SSR 684
+ +K + + + +L +YN+ L Q Q +E SK
Sbjct: 716 VTPDDKLKNLKENLVEIAYAKCDELIGLYNQGKLETQPGCNEEQTLEAKISGILSKVREE 775
Query: 685 LGD--------------MIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHF 730
+GD M SK + V+Q + +GQQ+ + G G + HF
Sbjct: 776 VGDICINELDNWNAPLIMATCGSKGSNLNVSQMVAVVGQQI-ISGNRVPDGFQDRSLPHF 834
Query: 731 KLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNL 790
+ P ++ G ++ F+ GL P E L H+IS RE +V ++ +E G + + L
Sbjct: 835 Q-----KNSKTPQSK-GFVRNSFYSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRL 888
Query: 791 MAILRDVVVCYDGTVRNVCSNSIIQFEYG 819
M L D+ YD TVR SN I+QF YG
Sbjct: 889 MKSLEDLSCQYDNTVR-TSSNGIVQFTYG 916
>K9G6H4_PEND2 (tr|K9G6H4) DNA-directed RNA polymerase OS=Penicillium digitatum
(strain PHI26 / CECT 20796) GN=PDIG_56720 PE=3 SV=1
Length = 1733
Score = 188 bits (478), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 220/880 (25%), Positives = 355/880 (40%), Gaps = 142/880 (16%)
Query: 45 NPFLGLPLEYGRCESCGTSEAG--KCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCL 102
+P LG CE+C E G +C GHFG+IEL P++H ++++KK+L VC NC
Sbjct: 57 DPRLGTIDRQYNCETC---EEGPKECPGHFGHIELASPVFHIGFLTKIKKLLETVCHNCG 113
Query: 103 KMK-----------------KTKFPS----SSSGLAQRLLSPCCQEPNA----------- 130
K+K K +F S S L +P E +
Sbjct: 114 KIKANTADSKFTEALRFRDPKRRFDSIWRLSKDVLICEADAPVDDEEFSKDSQKGRSHGG 173
Query: 131 ---AQVSIREVKTGDGACYL-VLKVSKSKMQDGFWRFLDKYGYRYEVDHTRALLPCEVME 186
AQ ++R+ +G C + K SK+ M+D + + + P +
Sbjct: 174 CGNAQPTVRK----EGICLVGTWKPSKAMMEDEMAQ-----------PEKKVITPTMALN 218
Query: 187 MIKRFPLETKKKLA-GKGYFPQDGYVIKYLPVPPNCLXXXXXXXXXXXXXXXXXXTF-LR 244
+ + +E + + Y + ++ LPVPP + T+ L
Sbjct: 219 IFRNISVEDVRIMGLSNDYARPEWMILTVLPVPPPTVRPSVVMGATSGARGEDDLTYKLA 278
Query: 245 KLLRKVE-VIRSSRSGEPNFESHQVEANDLQSVVDQYLQIRGCAKPARDIETHFGVNKEL 303
+++R + V R + G P + E+ LQ + Y+ +P + + V
Sbjct: 279 EIVRANQNVQRCEQEGAPEHVIREFESL-LQYHIATYMDNDIAGQPTAMQKGNRPVKALR 337
Query: 304 SDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHN 363
S K +++ + K FS+R+VITGD R++EVG+P+ A+ +T+ E V N
Sbjct: 338 SRLKGKE--GRLRQNLMGKRVDFSARTVITGDPNLRLDEVGVPYSTARILTYPEVVTPWN 395
Query: 364 MCYLQKLVDENLCL------AYKEGVSTYSLREGSK-GHTYLKPGQIVHRRIMDGDIVFI 416
+ LQKL+ + ++ LR + G L G V R + +GD +
Sbjct: 396 IEKLQKLIANGPNIHPGARYIVRDNGERIDLRHAKRAGAQQLLYGWKVERHLDNGDYILF 455
Query: 417 NRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVEL 476
NR P+ HK S+ V + T ++N + P ADFDGD ++L PQ A+AE+ EL
Sbjct: 456 NRQPSLHKESMMGHRVRVMPFSTFRMNLSVTSPYNADFDGDEMNLHVPQGEEARAELAEL 515
Query: 477 FSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKK-GFMDRAAANQMAMFLSLP-----LPQ 530
V K ++S ++ F+ + M + L +P +P
Sbjct: 516 TLVPKNIVSPQRNGPLMGIVQDTLCGIYKICRRDTFLTKDQV--MNLMLWVPDWDGAIPP 573
Query: 531 PALLKAGSGDCYWTSTQILQCALP-----LSFDCTG------------GRYLIRESDILG 573
PA+LK WT Q++ A P L D G G LI ++
Sbjct: 574 PAILKPRP---RWTGKQMISMAFPSGLNLLRVDKDGSPLAEKFSPLSDGGLLIHGGQLMY 630
Query: 574 FDLGRDVLPAVINEIAASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHDFSISGA 633
L + + A + ++F GP + FF Q + + NGFS+G+ D
Sbjct: 631 GMLSKKTVGASGGGVIHTIFNEYGPDTCVKFFSGAQTIVGYWLLHNGFSIGIGD------ 684
Query: 634 VKRITDRN-IGKVSPLLYQLRFIYNELVAQQLEKHMQDIELPAIK----FASKSSR---- 684
I D++ I K+ + + E+ A E ++ LP + F SK SR
Sbjct: 685 --TIPDQHTINKIEEAVRNRKQEVEEITASATENTLE--ALPGMNVRETFESKVSRALNN 740
Query: 685 ----LGD--------------MIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDV 726
GD M S SK + ++Q +GQQ V G+ G
Sbjct: 741 ARDEAGDATEKSLKDLNNAIQMARSGSKGSAINISQMTALVGQQ-SVEGKRIPFGFKYRT 799
Query: 727 ASHFKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTL 786
HF D Y G ++ + GL P E H+++ RE ++ ++ +E G +
Sbjct: 800 LPHFT------KDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYI 853
Query: 787 FKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGLKAGDNA 826
+ L+ L +V+V YDGTVRN + IIQF YG D A
Sbjct: 854 QRKLVKALEEVMVKYDGTVRNSLGD-IIQFIYGEDGLDGA 892
>K9FLF3_PEND1 (tr|K9FLF3) DNA-directed RNA polymerase OS=Penicillium digitatum
(strain Pd1 / CECT 20795) GN=PDIP_66280 PE=3 SV=1
Length = 1733
Score = 188 bits (478), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 220/880 (25%), Positives = 355/880 (40%), Gaps = 142/880 (16%)
Query: 45 NPFLGLPLEYGRCESCGTSEAG--KCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCL 102
+P LG CE+C E G +C GHFG+IEL P++H ++++KK+L VC NC
Sbjct: 57 DPRLGTIDRQYNCETC---EEGPKECPGHFGHIELASPVFHIGFLTKIKKLLETVCHNCG 113
Query: 103 KMK-----------------KTKFPS----SSSGLAQRLLSPCCQEPNA----------- 130
K+K K +F S S L +P E +
Sbjct: 114 KIKANTADSKFTEALRFRDPKRRFDSIWRLSKDVLICEADAPVDDEEFSKDSQKGRSHGG 173
Query: 131 ---AQVSIREVKTGDGACYL-VLKVSKSKMQDGFWRFLDKYGYRYEVDHTRALLPCEVME 186
AQ ++R+ +G C + K SK+ M+D + + + P +
Sbjct: 174 CGNAQPTVRK----EGICLVGTWKPSKAMMEDEMAQ-----------PEKKVITPTMALN 218
Query: 187 MIKRFPLETKKKLA-GKGYFPQDGYVIKYLPVPPNCLXXXXXXXXXXXXXXXXXXTF-LR 244
+ + +E + + Y + ++ LPVPP + T+ L
Sbjct: 219 IFRNISVEDVRIMGLSNDYARPEWMILTVLPVPPPTVRPSVVMGATSGARGEDDLTYKLA 278
Query: 245 KLLRKVE-VIRSSRSGEPNFESHQVEANDLQSVVDQYLQIRGCAKPARDIETHFGVNKEL 303
+++R + V R + G P + E+ LQ + Y+ +P + + V
Sbjct: 279 EIVRANQNVQRCEQEGAPEHVIREFESL-LQYHIATYMDNDIAGQPTAMQKGNRPVKALR 337
Query: 304 SDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHN 363
S K +++ + K FS+R+VITGD R++EVG+P+ A+ +T+ E V N
Sbjct: 338 SRLKGKE--GRLRQNLMGKRVDFSARTVITGDPNLRLDEVGVPYSTARILTYPEVVTPWN 395
Query: 364 MCYLQKLVDENLCL------AYKEGVSTYSLREGSK-GHTYLKPGQIVHRRIMDGDIVFI 416
+ LQKL+ + ++ LR + G L G V R + +GD +
Sbjct: 396 IEKLQKLIANGPNIHPGARYIVRDNGERIDLRHAKRAGAQQLLYGWKVERHLDNGDYILF 455
Query: 417 NRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVEL 476
NR P+ HK S+ V + T ++N + P ADFDGD ++L PQ A+AE+ EL
Sbjct: 456 NRQPSLHKESMMGHRVRVMPFSTFRMNLSVTSPYNADFDGDEMNLHVPQGEEARAELAEL 515
Query: 477 FSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKK-GFMDRAAANQMAMFLSLP-----LPQ 530
V K ++S ++ F+ + M + L +P +P
Sbjct: 516 TLVPKNIVSPQRNGPLMGIVQDTLCGIYKICRRDTFLTKDQV--MNLMLWVPDWDGAIPP 573
Query: 531 PALLKAGSGDCYWTSTQILQCALP-----LSFDCTG------------GRYLIRESDILG 573
PA+LK WT Q++ A P L D G G LI ++
Sbjct: 574 PAILKPRP---RWTGKQMISMAFPSGLNLLRVDKDGSPLAEKFSPLSDGGLLIHGGQLMY 630
Query: 574 FDLGRDVLPAVINEIAASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHDFSISGA 633
L + + A + ++F GP + FF Q + + NGFS+G+ D
Sbjct: 631 GMLSKKTVGASGGGVIHTIFNEYGPDTCVKFFSGAQTIVGYWLLHNGFSIGIGD------ 684
Query: 634 VKRITDRN-IGKVSPLLYQLRFIYNELVAQQLEKHMQDIELPAIK----FASKSSR---- 684
I D++ I K+ + + E+ A E ++ LP + F SK SR
Sbjct: 685 --TIPDQHTINKIEEAVRNRKQEVEEITASATENTLE--ALPGMNVRETFESKVSRALNN 740
Query: 685 ----LGD--------------MIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDV 726
GD M S SK + ++Q +GQQ V G+ G
Sbjct: 741 ARDEAGDATEKSLKDLNNAIQMARSGSKGSAINISQMTALVGQQ-SVEGKRIPFGFKYRT 799
Query: 727 ASHFKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTL 786
HF D Y G ++ + GL P E H+++ RE ++ ++ +E G +
Sbjct: 800 LPHFT------KDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYI 853
Query: 787 FKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGLKAGDNA 826
+ L+ L +V+V YDGTVRN + IIQF YG D A
Sbjct: 854 QRKLVKALEEVMVKYDGTVRNSLGD-IIQFIYGEDGLDGA 892
>K8ECL4_9CHLO (tr|K8ECL4) DNA-directed RNA polymerase OS=Bathycoccus prasinos
GN=Bathy03g01930 PE=3 SV=1
Length = 1499
Score = 188 bits (477), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 226/878 (25%), Positives = 360/878 (41%), Gaps = 159/878 (18%)
Query: 57 CESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVC--LNCLKMKK-------T 107
C++C + C GHFGY++L +P++H + + L VC +CL MK+ T
Sbjct: 90 CQTC-KGKIMDCSGHFGYLKLELPVFHVGYFKAIVHCLQCVCKECSCLLMKEEEQEEMLT 148
Query: 108 KFPSSSSGLA-----------QRLLSPC-----CQEPNAAQVSIREVKTGDGAC---YLV 148
K S + ++LL C C + A ++ Y
Sbjct: 149 KLRSREKKIGGVDHAYRRVMFKKLLEKCKRTKVCFQCEAVNGPVKRAGQNLKIIHEKYTS 208
Query: 149 LKVSKSKMQDGFWRFLDKYGYRYEVDHTRA---LLPCEVMEMIKRFPLETKKKLAGKGYF 205
K + K + F + K+ + +RA L P V+++ KR E L
Sbjct: 209 NKAEQEKRERAFEEAM-KHNDQLRQHISRAQDDLNPIRVLQIFKRIA-EKDLSLLDLAQR 266
Query: 206 PQDGYVIKYLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEVIRSSRSGEPNFES 265
P++ VI +L VPP C+ VE+ + S E +
Sbjct: 267 PEN-MVITHLSVPPCCIRPS------------------------VELDGQAGSTEDDISM 301
Query: 266 HQVEANDLQSVVDQYLQIRGCAKPAR-------DIETHFGVNKELSDASN---------K 309
V+ ++ +V+ Q L+ RG A I+ +N EL S+ +
Sbjct: 302 KLVQIIEINNVLRQGLE-RGLAVTNMMENWEFLQIQFAMYINSELPGISSQYQSPGKPLR 360
Query: 310 AWLDKMKS---LFISKGSG----FSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSH 362
++ ++K F SG F++R+VI+ D RI+EVG+P IA ++T+ E VN++
Sbjct: 361 GFVQRLKGKQGRFRGNLSGKRVDFTARTVISPDPNLRIDEVGLPQHIAMQLTYPETVNNN 420
Query: 363 NMCYLQKLV--------DENLCLAYKEG-VSTYSLREGSKGHTY--LKPGQIVHRRIMDG 411
N+ L++L+ N + + G S L+ G + LKPG IV R + DG
Sbjct: 421 NIAELRQLIINGEGKWPGANFVKSKQSGHFSAQYLKYGDRNRVAKKLKPGDIVERHVRDG 480
Query: 412 DIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKA 471
DIV NR P+ HK S+ A + T++ N +C P ADFDGD +++ PQ+ A+A
Sbjct: 481 DIVLFNRQPSLHKMSIMAHRAKVMPWRTLRFNECVCAPYNADFDGDEMNIHLPQTEEARA 540
Query: 472 EVVELFSVEKQLLS-SHXXXXXXXXXXXXXXXXXXXVKKGFMDRAAANQMAMFL-----S 525
E + L V + L + + K+ F DR+ Q+A ++ S
Sbjct: 541 EAISLMGVTQNLCTPKNGEILIAATQDFLTASFLLTSKEVFFDRSQFGQLAAYMSDALES 600
Query: 526 LPLPQPALLKAGSGDCYWTSTQILQCAL-PLSFD--------------------CTGGRY 564
+ LP PA++K WT QI + P D C+ Y
Sbjct: 601 IDLPSPAIVKPIE---MWTGKQIFSVLIRPRMRDQIFVNLEVSEKAYTKVNQQMCSNDGY 657
Query: 565 L-IRESDILGFDLGRDVLPAVINEIAASVFFGK--GPQEALNFFDVLQPFLMECIFSNGF 621
+ I+ S+I+ LG+ L N+ G A N + L I GF
Sbjct: 658 VCIQNSEIISGQLGKATLGGG-NKTGLFYVLNSDYGADVAANAMNRLAKLAARWIGIRGF 716
Query: 622 SVGLHDFSISGAVKR-----------ITDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQD 670
S+G+ D S ++R D I L+ N Q LE +
Sbjct: 717 SIGIDDVKPSPELEREKQNRVDSGYAKCDERIASFEKGTLDLQPGCN--AEQTLEAEVLG 774
Query: 671 IELPAIKFASKSSRLGD---------MIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKG 721
+ L A++ A+ ++ L M SK + ++Q + +GQQ V G G
Sbjct: 775 V-LSAVREAAGNACLDALPKLNSPLVMALCGSKGSTINISQMMACVGQQA-VGGTRPPDG 832
Query: 722 LLEDVASHFKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLS 781
E HFK G+ P+A+ G + F+ GL P E H+++ RE +V ++ +
Sbjct: 833 FFERSLPHFK-----RGEKTPAAK-GFVANSFYSGLLPTEFFFHTMAGREGLVDTAVKTA 886
Query: 782 EPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 819
E G + + LM L D+ + YDGTVRN S I+Q EYG
Sbjct: 887 ETGYMSRRLMKALEDLSLGYDGTVRN-SSGDIVQLEYG 923
>K0KEX7_WICCF (tr|K0KEX7) DNA-directed RNA polymerase OS=Wickerhamomyces ciferrii
(strain F-60-10 / ATCC 14091 / CBS 111 / JCM 3599 / NBRC
0793 / NRRL Y-1031) GN=RPC1 PE=3 SV=1
Length = 1457
Score = 186 bits (472), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 210/881 (23%), Positives = 354/881 (40%), Gaps = 132/881 (14%)
Query: 48 LGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKM--- 104
+G+ C C + A C GHFG+++LP+P++H + ++L +C +C M
Sbjct: 58 MGISSNSSECSVCKGNLA-TCHGHFGHLKLPLPVFHVGYFKATIQVLQSICKSCGSMLLD 116
Query: 105 --KKTKF------PSSSS----GLAQRLLSPC-----CQEPNAAQVSIREVKTGDGACYL 147
K +F P + G+ +++L C C + A +++ G G L
Sbjct: 117 EEAKRQFRLELRRPGIDNLRRMGILKKILDQCKKQRRCLDCGAVNGVVKKAAAGSGTASL 176
Query: 148 VLKV-------SKSKMQDGFWRF-----------LDKYGYRYEVDHTRALLPCEVMEMIK 189
+ K ++ G W ++++ R D L P +V+ + K
Sbjct: 177 KIVHDTFRWIGKKPTIEKGEWDKDIETAVHNNPDIERFAKRCMDD----LNPLKVLNLFK 232
Query: 190 RFPLETKKKL---AGKGYFPQDGYVIKYLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKL 246
+ E + + +G+G P+ Y+ +YLP PP C+ L ++
Sbjct: 233 QVKPEDCELMGIDSGRGGRPET-YIWRYLPAPPVCIRPSVMMSDSPTSNEDDLTVKLTEI 291
Query: 247 LRKVEVIRSSRSGEPNFESHQVEANDLQSVVDQYLQ--------IRGCAKPARDIETHFG 298
+ +IR+ + + + + LQ V Y+ + G + A+ + G
Sbjct: 292 VWTSSLIRAGIEKGISINNLMEQWDYLQLSVAMYINSDAASPAMLPGASAAAKSAKPIRG 351
Query: 299 VNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEER 358
+ + L K + + K FS R+VI+ D RI+EV +P +A+ +T+ E
Sbjct: 352 LCQRL-----KGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPDRVAKVLTYPET 406
Query: 359 VNSHNMCYLQKLV--------DENLCLAYKEGVSTYSLREGSKGHTY--LKPGQIVHRRI 408
+N LQ+L+ N L E + +LR G + L+ G +V R +
Sbjct: 407 CTRYNKEKLQRLILNGPTEHPGANYLLKKNED-ARRNLRYGDRNKLAKNLQYGDVVERHL 465
Query: 409 MDGDIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLA 468
DGD+V NR P+ H+ S+ + I T ++N +C P ADFDGD ++L PQ+
Sbjct: 466 EDGDVVLFNRQPSLHRLSILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEE 525
Query: 469 AKAEVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKK-GFMDRAAANQMAMFLS-- 525
A+AE + L V+ LL+ K F DRA Q+ +S
Sbjct: 526 ARAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFFDRATFTQLLSMMSDG 585
Query: 526 ---LPLPQPALLKAGSGDCYWTSTQILQC--------------------------ALPLS 556
LP PA+ K WT Q+ LP+
Sbjct: 586 DLQFDLPPPAIHKPVY---MWTGKQVFSLLIKPNKKSPVVINLDAKNKAFTPPAKGLPME 642
Query: 557 FDCTGGRYLIRESDILGFDLGRDVL-PAVINEIAASVFFGKGPQEALNFFDVLQPFLMEC 615
G +IR S IL + + L + + ++ GP+EA + +
Sbjct: 643 MSPNDGFVIIRGSQILSGVMDKSTLGDGKKHSVFYTILRDYGPKEAATAMNRMAKLCARF 702
Query: 616 IFSNGFSVGLHDFSISGAVKRITDRNIGKVSPLLYQLRFIYNE--LVAQQLEKHMQDIEL 673
+ + GFS+G+ D + A+K + + +L +Y+E L Q Q +E
Sbjct: 703 LGNRGFSIGISDVTPGVALKNTKEEMVEAAYAKCDELIKLYSEGKLETQPGCNEEQTLEA 762
Query: 674 PAIKFASK-SSRLGDM----IDSK----------SKSALDKVTQQIGFLGQQLFVRGRLY 718
SK +G++ +DS SK + V+Q + +GQQ+ + G
Sbjct: 763 KIGGLLSKVREEVGEVCINELDSSNAPLIMATCGSKGSTLNVSQMVAVVGQQI-ISGNRV 821
Query: 719 SKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSR 778
G + HF P ++ G ++ FF GL P E L H+IS RE +V ++
Sbjct: 822 PDGFQDRSLPHFP-----KNSKTPQSK-GFVRNSFFSGLSPPEFLFHAISGREGLVDTAV 875
Query: 779 GLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 819
+E G + + LM L D+ YD TVR SN I+QF YG
Sbjct: 876 KTAETGYMSRRLMKSLEDLSCQYDNTVRT-SSNGIVQFTYG 915
>H2U2N2_TAKRU (tr|H2U2N2) DNA-directed RNA polymerase OS=Takifugu rubripes
GN=LOC101067103 PE=3 SV=1
Length = 1628
Score = 186 bits (472), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 214/873 (24%), Positives = 347/873 (39%), Gaps = 117/873 (13%)
Query: 45 NPFLGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKM 104
+P G+ GRC++C +C GHFG+IEL P++H V+++ K+L VC C K+
Sbjct: 57 DPRQGVIERTGRCQTCA-GNMTECPGHFGHIELAKPVFHVGFVTKIMKVLRCVCFFCSKL 115
Query: 105 KKTKFPSSSSGLAQRLLSPCCQEPNAAQVSIREVKTGDGACY---------------LVL 149
+++ + +L +P + E+ G C
Sbjct: 116 ----LVDANNPKIKDILVKSKGQPRKRLTHVYELCKGKNICEGGEEMDNKFGMEQQETEE 171
Query: 150 KVSKSKMQDGFWRF--------LDKYGYRYEVDH----TRALL-PCEVMEMIKRFPLETK 196
++K K G R+ L+ Y V+ + LL P V E+ KR E
Sbjct: 172 DITKEKGHGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEED 231
Query: 197 KKLAGKGYFPQDGY-VIKYLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEVIRS 255
L F + + ++ LPVPP + KL V++
Sbjct: 232 IILGMDSKFARPEWMIVTVLPVPPLAVRPAVVMQGSARNQDD----LTHKLADIVKINNQ 287
Query: 256 SRSGEPNFESHQVEANDLQ-------SVVDQYLQ--IRGCAKPARDIETHFGVNKELSDA 306
R E + + V A D++ ++VD L R K R +++ + + L
Sbjct: 288 LRRNEQSGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKS---IKQRL--- 341
Query: 307 SNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCY 366
K +++ + K FS+R+VIT D +I++VG+P IA +TF E V N+
Sbjct: 342 --KGKEGRVRGNLMGKRVDFSARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDR 399
Query: 367 LQKLVDEN------LCLAYKEGVSTYSLREGSK-GHTYLKPGQIVHRRIMDGDIVFINRP 419
LQ+LV ++ LR K +L+ G V R + DGDIV NR
Sbjct: 400 LQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQ 459
Query: 420 PTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSV 479
PT HK S+ V I T ++N + P ADFDGD ++L PQSL +AE+ EL V
Sbjct: 460 PTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMV 519
Query: 480 EKQLLSSHXXXXXXXXXXXXXXXXXXXVKKG-FMDRAAANQMAMFLSL---PLPQPALLK 535
+ +++ K+ F+DR + MFLS +PQPA+LK
Sbjct: 520 PRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLDRGEVMNLLMFLSTWDGKMPQPAILK 579
Query: 536 AGSGDCYWTSTQILQCALPLSF-----------DCTGGRY----------LIRESDILGF 574
WT QI +P D G Y ++ +++
Sbjct: 580 P---RALWTGKQIFSLIIPGHINVIRTHSTHPDDEDSGPYKHISPGDTKVIVENGELIMG 636
Query: 575 DLGRDVLPAVINEIAASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHD------- 627
L + L + + G F+ +Q + + G S+G+ D
Sbjct: 637 ILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVVNNWLLIEGHSIGIGDSIADAKT 696
Query: 628 -FSISGAVKR--------ITDRNIGKVSPLL-YQLRFIYNELVAQQLEKHMQDIELPAIK 677
I +K+ I + ++ P LR + V + L A K
Sbjct: 697 YLDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQK 756
Query: 678 FASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYD 737
S+ + M+ + SK + ++Q I +GQQ V G+ G HF +K DY
Sbjct: 757 SLSEYNNFKSMVVAGSKGSKINISQVIAVVGQQ-NVEGKRIPFGFKHRTLPHF-IKDDYG 814
Query: 738 GDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDV 797
+ G ++ + GL P E H++ RE ++ ++ +E G + + L+ + V
Sbjct: 815 PE-----SRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESV 869
Query: 798 VVCYDGTVRNVCSNSIIQFEYGLK--AGDNASY 828
+V YDGTVRN N ++Q YG AG+N +
Sbjct: 870 MVKYDGTVRNSI-NQVVQLRYGEDGLAGENVEF 901
>L0PB43_PNEJ8 (tr|L0PB43) DNA-directed RNA polymerase OS=Pneumocystis jiroveci
(strain SE8) GN=PNEJI1_002254 PE=3 SV=1
Length = 1390
Score = 186 bits (471), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 218/852 (25%), Positives = 359/852 (42%), Gaps = 122/852 (14%)
Query: 57 CESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNC----LKMKKT-KFPS 111
CE+CG + C GHFGY++L +P++H + + +L +C +C LK+K T F
Sbjct: 81 CETCG-EKIVTCVGHFGYVKLILPVFHIGYFKTIITILQNICKDCSKILLKLKDTYSFLK 139
Query: 112 ----------SSSGLAQRLLSPC-----CQEPNAAQVSIREVKTGDGACYLVLKVSKSKM 156
S + +R+ C C + Q +++V GA ++ + K K
Sbjct: 140 ELRKAETDNLKKSQIYKRINDTCKKVRICPNCQSTQGVVKKV----GALKIIHEKFKYKF 195
Query: 157 QDGFWRFLDKYGYRYEVDHTRA---LLPCEVMEMIKRFPLETKKKLAGKGYFPQDG---- 209
Q F L K + ++A L P +V+ + K+ P + L G P G
Sbjct: 196 QKTFETIL-KSTPDMKTHLSKAHDDLNPLKVLNLFKQIPPMDCELL---GINPLKGRPEM 251
Query: 210 YVIKYLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEVIRSS-RSGEPNFESHQV 268
++ + +P PP C+ L +++ +I+S+ G P
Sbjct: 252 FIWQCIPAPPVCIRPSISQDGASTEDDLTVK--LTEIIWTNSLIKSALEKGTP------- 302
Query: 269 EANDLQSVVDQYLQIRGCAKPARDIETHFGVNKELSDASNKAWLDKMKSL---------- 318
+Q++++Q+ ++ C +N EL S++A M+
Sbjct: 303 ----IQNLMEQWDYLQLCVA--------MYINSELPGISSQANTKPMRGFCQRLKGKQGR 350
Query: 319 FISKGSG----FSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLV--- 371
F SG FS+R+VI D I+++ IP IA+ +T+ E+V +N+ L+K +
Sbjct: 351 FRGNLSGKRVDFSARTVIGPDPNLSIDQIAIPERIAKILTYPEKVTYYNIEQLKKAIING 410
Query: 372 -----DENLCLAYKEGVSTY-SLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKH 425
N + + G + + K LK G +V R I D DIV NR P+ HK
Sbjct: 411 PDIHPGANYIMNQENGFKKFLKFGDRQKMALELKIGDVVERHIRDDDIVLFNRQPSLHKL 470
Query: 426 SLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLS 485
S+ L + T ++N +C P ADFDGD ++L PQ+ A+AE +EL SV+ L++
Sbjct: 471 SI--LCHKVRPWKTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAIELMSVKNNLVT 528
Query: 486 SHXXXXXXXXXXXXXXXXXXXVKK-GFMDRAAANQMAMF-----LSLPLPQPALLKA--- 536
+K F DR + F + + LP P ++K
Sbjct: 529 PRNGDPIIAAIQDFVTASYLISQKDNFYDRKTFTHICSFMVDANMHIDLPSPVIIKPVPY 588
Query: 537 GSGDCYWTSTQILQCALPLSFDCTGGRYLIRESDIL-GFDLGRDVLPAVINEIAASVFFG 595
G Y S + L + G LIR S+I+ G V N I +
Sbjct: 589 GQESKYLMSFSSPKGIPDLCIN--DGYLLIRGSEIMCGVMDKSTVGDGKKNSIFYVILKN 646
Query: 596 KGPQEALNFFDVLQPFLMECIFSNGFSVGLHDFSISGAVKRITDRNIGKVS-----PLLY 650
GP EA + L I ++GFS+G++D G + + ++ K + L+Y
Sbjct: 647 YGPTEAAEAMNRLAKLCARWIGNHGFSIGINDVQ-PGVLLKKKKESLVKAAYQSCDDLIY 705
Query: 651 QL-------------RFIYNELVAQQLEKHMQDIELPAIKFASKSSRLGDMIDSKSKSAL 697
L V+ L K D+ + ++++ M SK +
Sbjct: 706 ALSSGKLENQPGCDAEQTLEAKVSGILSKVRDDVGQICMSELARTNASLIMATCGSKGSK 765
Query: 698 DKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGCFFHGL 757
V+Q + +GQQ+ + G G + HF+ C + P A+ G +K F+ GL
Sbjct: 766 INVSQMVSCVGQQI-ISGSRVPNGFQDRSLPHFQKNCKFQ----PPAK-GFVKNSFYSGL 819
Query: 758 DPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFE 817
P E L H+IS RE +V ++ +E G + + LM L D+ + YDGTVRN S+ I+QF
Sbjct: 820 TPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSLQYDGTVRN-SSSGIVQFI 878
Query: 818 YGLKAGDNASYL 829
YG G + +YL
Sbjct: 879 YG-DDGLDPTYL 889
>H3CXP9_TETNG (tr|H3CXP9) DNA-directed RNA polymerase OS=Tetraodon nigroviridis
GN=POLR2A PE=3 SV=1
Length = 1714
Score = 186 bits (471), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 211/861 (24%), Positives = 346/861 (40%), Gaps = 113/861 (13%)
Query: 45 NPFLGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKM 104
+P G+ GRC++C +C GHFG+IEL P++H V+++ K+L VC C K+
Sbjct: 57 DPRQGVIERTGRCQTCA-GNMTECPGHFGHIELAKPVFHVGFVTKIMKVLRCVCFFCSKL 115
Query: 105 ----KKTKFPSSSSGL---AQRLLSPCCQEPNAAQVSIREVKTGDGACYLVLKVSKSKMQ 157
K + + + + E + I + K G ++ +S ++
Sbjct: 116 LVDANNPKIMCKGKNICEGGEEMDNKFGMEQQETEEDITKEKGHGGCGRYQPRIRRSGLE 175
Query: 158 -DGFWRFLDKYGYRYEVDHTRALLPCEVMEMIKRFPLETKKKLAGKGYFPQDGY-VIKYL 215
W+ +++ ++ L P V E+ KR E L F + + ++ L
Sbjct: 176 LYAEWKHVNEDSQEKKI----LLSPERVHEIFKRISDEEDMILGMDPKFARPEWMIVTVL 231
Query: 216 PVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEVIRSSRSGEPNFESHQVEANDLQ- 274
PVPP + KL V++ R E + + V A D++
Sbjct: 232 PVPPLAVRPAVVMQGSARNQDD----LTHKLADIVKINNQLRRNEQSGAAAHVIAEDVKL 287
Query: 275 ------SVVDQYLQ--IRGCAKPARDIETHFGVNKELSDASNKAWLDKMKSLFISKGSGF 326
++VD L R K R +++ + + L K +++ + K F
Sbjct: 288 LQFHVATMVDNELPGLPRAMQKSGRPLKS---IKQRL-----KGKEGRVRGNLMGKRVDF 339
Query: 327 SSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLVDENLCLAYKEGVSTY 386
S+R+VIT D +I++VG+P IA +TF E V N+ LQ+LV + G S Y
Sbjct: 340 SARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELV--------RRGNSQY 391
Query: 387 S--------------LREGSK-GHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALV 431
LR K +L+ G V R + DGDIV NR PT HK S+
Sbjct: 392 PGAKYIIRDNGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHR 451
Query: 432 VYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHXXXX 491
V I T ++N + P ADFDGD ++L PQSL +AE+ EL V + +++
Sbjct: 452 VRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRP 511
Query: 492 XXXXXXXXXXXXXXXVKKG-FMDRAAANQMAMFLSL---PLPQPALLKAGSGDCYWTSTQ 547
K+ F+DR + MFLS +PQPA+LK WT Q
Sbjct: 512 VMGIVQDTLTAVRKFTKRDVFLDRGEVMNLLMFLSTWDGKMPQPAILKP---RALWTGKQ 568
Query: 548 ILQCALPLSF-----------DCTGGRY----------LIRESDILGFDLGRDVLPAVIN 586
I +P D G Y ++ +++ L + L
Sbjct: 569 IFSLIIPGHINVIRTHSTHPDDEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAG 628
Query: 587 EIAASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHD--------FSISGAVKR-- 636
+ + G F+ +Q + + G S+G+ D I +K+
Sbjct: 629 SLVHISYLEMGHDITRLFYSNIQTVVNNWLLIEGHSIGIGDSIADAKTYLDIQNTIKKAK 688
Query: 637 ------ITDRNIGKVSPLL-YQLRFIYNELVAQQLEKHMQDIELPAIKFASKSSRLGDMI 689
I + ++ P LR + V + L A K S+ + M+
Sbjct: 689 QDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMV 748
Query: 690 DSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLL 749
+ SK + ++Q I +GQQ V G+ G HF +K DY + G +
Sbjct: 749 VAGSKGSKINISQVIAVVGQQ-NVEGKRIPFGFKHRTLPHF-IKDDYGPE-----SRGFV 801
Query: 750 KGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVC 809
+ + GL P E H++ RE ++ ++ +E G + + L+ + V+V YDGTVRN
Sbjct: 802 ENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDGTVRNSI 861
Query: 810 SNSIIQFEYGLK--AGDNASY 828
N ++Q YG AG+N +
Sbjct: 862 -NQVVQLRYGEDGLAGENVEF 881
>B0DB45_LACBS (tr|B0DB45) DNA-directed RNA polymerase OS=Laccaria bicolor (strain
S238N-H82 / ATCC MYA-4686) GN=LACBIDRAFT_327452 PE=3
SV=1
Length = 1742
Score = 185 bits (470), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 152/554 (27%), Positives = 249/554 (44%), Gaps = 54/554 (9%)
Query: 314 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLVDE 373
+++ + K FS+R+VITGD ++EVG+P IA +T+ ERV +N+ YLQ+LV
Sbjct: 341 RLRGNLMGKRVDFSARTVITGDPNLELDEVGVPRSIAMNLTYPERVTPYNIAYLQELV-R 399
Query: 374 NLCLAY-------KEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHS 426
N AY ++ LR + +L+ G IV R + DGD V NR P+ HK S
Sbjct: 400 NGPTAYPGARYVVRDTGERIDLRYNKRADAFLQYGWIVERHLKDGDFVLFNRQPSLHKMS 459
Query: 427 LQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSS 486
+ + V + T ++N + P ADFDGD +++ PQS +AE+ ++ V +Q++S
Sbjct: 460 MMSHRVKLMYYSTFRLNLSVTPPYNADFDGDEMNMHVPQSEETRAELSQIAWVPRQIISP 519
Query: 487 HXXXXXXXXXXXXX-XXXXXXVKKGFMDRAAANQMAMFLSL---PLPQPALLKAGSGDCY 542
++ F+D + +++ +P PA+LK
Sbjct: 520 QANKPVMGIVQDTLCGIRKFTLRDTFLDWNQVQNILLWVPEWDGSVPIPAILKPKP---L 576
Query: 543 WTSTQILQCALPLSFDCTGGR------------YLIRESDILGFDLGRDVLPAVINEIAA 590
WT QIL A+P + LI +++ + + + A +
Sbjct: 577 WTGKQILSLAIPRGINIHRSPDPKSSNPVFDDGVLIENGELIFGIVEKKTVGASQGGLVH 636
Query: 591 SVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHDF-----SISGAVKRITDR--NIG 643
VF KGP+ F LQ + +F NGFS+G+ D ++S + I D N+
Sbjct: 637 VVFREKGPEATRQLFTGLQMVVNYWLFHNGFSIGIGDTIADRGTMSYITQTIADSKANVA 696
Query: 644 KV-----------SPLLYQLRFIYNELVAQQLEKHMQDIELPAIKFASKSSRLGDMIDSK 692
K+ +P + +R + LV +QL A K + + + M+ +
Sbjct: 697 KIINDATHDRLKAAPGM-TIRESFESLVERQLNLARDTSGQYAQKHLKEDNNVKQMVVAG 755
Query: 693 SKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGC 752
SK + ++Q +GQQ V GR G HF D + G ++
Sbjct: 756 SKGSFINISQMSVCVGQQ-SVEGRRIPFGFRHRTLPHFT------KDDFSPESRGFVENS 808
Query: 753 FFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNS 812
+ GL P E H+++ RE ++ ++ +E G + + L+ L DV+VCYDGTVRN +
Sbjct: 809 YLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMVCYDGTVRNSLGD- 867
Query: 813 IIQFEYGLKAGDNA 826
+IQF YG D A
Sbjct: 868 LIQFVYGEDGMDGA 881
>D2RIB4_ARCPA (tr|D2RIB4) DNA-directed RNA polymerase OS=Archaeoglobus profundus
(strain DSM 5631 / JCM 9629 / NBRC 100127 / Av18)
GN=Arcpr_0978 PE=3 SV=1
Length = 871
Score = 185 bits (469), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 213/834 (25%), Positives = 346/834 (41%), Gaps = 94/834 (11%)
Query: 45 NPFLGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKM 104
+P LG+ RC +CG +AG+C GHFG+IEL P+ H + + K+L+ C C ++
Sbjct: 46 DPRLGVIDPGLRCRTCG-GKAGECPGHFGHIELAAPVIHVGYAKLIAKLLNATCRECGRL 104
Query: 105 KKTKFPSSSSGLAQRLLSPCCQEPNAAQVSIREVKTGDGACYLVLKVSKSKMQDGFWRFL 164
+ P + + L + Q +K V K + +F
Sbjct: 105 R---LPDK---VRDKFLDEIERRKELGQDYDEIIKDVYRRAKAVKKCPHCGAEAVEVKF- 157
Query: 165 DKYGYRYEVDHTRALLPCEVMEMIKRFPLETKKKLAGKGYFPQ----DGYVIKYLPVPPN 220
+K + Y +H L P +V E +++ P L G P+ + VI LPVPP
Sbjct: 158 EKPTFYYIDEHK--LTPLDVREWLEKIP---DDDLPVLGIDPKACRPEWLVITVLPVPPV 212
Query: 221 CLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEVIRSSRSGEPNFESHQVEANDLQSVVDQY 280
+ + + + + +G P+ + LQ V Y
Sbjct: 213 TVRPSIILETGQRSEDDLTHKLVDIIRINQRFLENKEAGAPHLILEDL-WELLQYHVTTY 271
Query: 281 L--QIRGCAKPARDIETHFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYK 338
+ ++ G PAR G + K + + K FS+R+VI+ D
Sbjct: 272 INNEVSGIP-PARH---RSGRPLKTLAQRLKGKEGRFRGSLSGKRVNFSARTVISPDPCI 327
Query: 339 RINEVGIPHEIAQRITFEERVNSHNMCYLQKLVDENLCLAYKEGVSTYSLR-EGSKGHTY 397
INEVG+P EIA+ +T V N+ ++ + L + + Y +R +G +
Sbjct: 328 SINEVGVPKEIAEELTVPIYVTERNIEEAREYI-----LRTEHPKANYVIRPDGRRIRVM 382
Query: 398 ----------LKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLIC 447
L+PG IV R++ DGDIV NR P+ H+ S+ A V + T ++NP +C
Sbjct: 383 DTNREELAEKLEPGWIVERQLKDGDIVLFNRQPSLHRMSIMAHYVRVLPGKTFRLNPAVC 442
Query: 448 GPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXV 507
P ADFDGD ++L PQS+ A+AE L +V++ +LS
Sbjct: 443 PPYNADFDGDEMNLHVPQSIEAQAEAKILMAVQQHILSPRFGGPIIGGIHDHISGLYLLT 502
Query: 508 KKGFMDRAAANQMAMFLSLP-----LPQPALLKAGSGDCYWTSTQILQCALP---LSFD- 558
+ ++ + + M+L P LP+P ++K G YWT QI LP L F
Sbjct: 503 RG---EKLFSKEEVMYLLGPFDLKELPEPKVVK--DGKPYWTGKQIFSAILPDVTLEFKA 557
Query: 559 --CTGGRYLIRES---DILGFDLGRDVLPAVINEIAASVFFG---------KGPQEALNF 604
C G +ES D +++ I+E A F G G A F
Sbjct: 558 EICKGCNECKKESCEYDAYVIIKNGELIRGTIDEKAVGAFKGIIIDEIVRKYGNDVAKKF 617
Query: 605 FDVLQPFLMECIFSNGFSVGLHDFS------------ISGAVKRITD----RNIGKVSPL 648
D + + I GF++G+ D I+ A K++ D G + P+
Sbjct: 618 IDDMTHLAIRAIMLTGFTIGIDDEDLPEEAIAQVKEIIAEAEKKVIDLIKAYREGNLEPM 677
Query: 649 LYQ-LRFIYNELVAQQLEKHMQDIELPAIKFASKSSRLGDMIDSKSKSALDKVTQQIGFL 707
+ L ++ ++L + A KF ++ M S ++ ++ +TQ +
Sbjct: 678 PGRSLEETLEMMIMRELGRARDMAGRVAEKFLGYNNPAVIMAVSGARGSMLNLTQMSACI 737
Query: 708 GQQLFVRGRLYSKG--LLEDVASHFKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVH 765
GQQ VRG ++G HFK GD A G ++ + GL+P E H
Sbjct: 738 GQQ-SVRGERINRGYTYTNRTLPHFK-----PGDLSARAR-GFVESSYKRGLNPIEFFFH 790
Query: 766 SISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 819
++ RE +V ++ S G L + ++ L+D+ V YDGTVR S +++QF YG
Sbjct: 791 AMGGREGLVDTACRTSISGYLQRRMINALQDIKVEYDGTVREQTSETVVQFRYG 844
>J9ISD7_9SPIT (tr|J9ISD7) DNA-directed RNA polymerase OS=Oxytricha trifallax
GN=OXYTRI_19848 PE=3 SV=1
Length = 1782
Score = 185 bits (469), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 214/867 (24%), Positives = 354/867 (40%), Gaps = 131/867 (15%)
Query: 45 NPFLGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKM 104
+P +G + RC +C S+A C GHFG+IEL P+YH + ++K+L VC C K+
Sbjct: 59 DPRMGTMDKELRCFTCKGSQA-DCPGHFGHIELAKPVYHAGLLEFIRKVLRCVCFYCSKL 117
Query: 105 KKTK--------FPSSSSGLAQRLLSPC-----CQEPNAAQVSIREVKTGDGACYLVLKV 151
K +SS+ LA R L C C+E Q KTG LK+
Sbjct: 118 LAEKEKLEELRRIKTSSARLA-RALKLCDGIRLCKECGHKQPKFS--KTG-------LKI 167
Query: 152 SKSKMQDGFWRFLDKYGYRYEVDHTRALLPCEVMEMIKRFPLETKKKLAGKGYFPQ---- 207
M D D+ + L P E ++ +R E+ + G+ P+
Sbjct: 168 QVDYMDDQIDAGRDRKQF---------LQPDEAHKVFERIDEESCTLM---GFQPKISRP 215
Query: 208 DGYVIKYLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEVIRSSRSGEPNFESHQ 267
+ +IK L V P + +++ L + + + G N +
Sbjct: 216 ENMIIKNLAVAPPPVRPSVSMGNTMRSEDDLTYCYIKILQTNIALQTQIQKGA-NLTTIN 274
Query: 268 VEANDLQ----SVVD-----QYLQIRGCAKPARDIETHFGVNKELSDASNKAWLDKMKSL 318
V + LQ +V+D Q Q KP + I + + +++
Sbjct: 275 VLRDSLQYYVATVMDNEIQGQPTQKHKSGKPLKAIRSRL-----------RGKEGRLRGN 323
Query: 319 FISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLVDEN---- 374
+ K FS+R+VIT D R++++G+P +IA +T E V + N+ ++ LV
Sbjct: 324 LMGKRVDFSARTVITPDPILRLDQLGVPQQIALNLTVPETVTAENIDEMRYLVQNGPTQW 383
Query: 375 -----LCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQA 429
+ + + L+ S H ++PG V R + + D V NR P+ HK SL
Sbjct: 384 PGAKYIIRHDERQIDLSQLKNRSDLH--IEPGFKVERHLRNDDYVIFNRQPSLHKMSLMG 441
Query: 430 LVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHXX 489
V + T ++N + P ADFDGD +++ PQS AEV E+ +V Q++S
Sbjct: 442 HRVKVLPFSTFRLNLSVTTPYNADFDGDEMNMHVPQSYETMAEVKEIMAVPNQIVSPQSN 501
Query: 490 XXXXXXXXXXXXXXXX-XVKKGFMDRAAANQMAMFLSL---PLPQPALLKAGSGDCYWTS 545
+K F+++ Q+ M+++ LP PA+LK WT
Sbjct: 502 KPVMGIVQDSLLGVMLFTLKDTFIEKELVMQLLMWINYEDDKLPPPAILKPKP---LWTG 558
Query: 546 TQILQCALP------------------LSFDCTG-GRYLIRESDILGFDLGRDVLPAVIN 586
QI +P L +D G L+R+ ++L +L + + +
Sbjct: 559 KQIFSLIIPDINIQKVGERQKKGEPKNLIWDSAGDNNILMRKGELLCGNLTKSTIGSSSG 618
Query: 587 EIAASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHDF---------------SIS 631
+ ++ KGP +F Q + + +GF+VG+ D
Sbjct: 619 GMIHVIWKEKGPYVTRDFMSNTQLVINNWLHQHGFTVGVQDIIAKKEIVQKIRESMVIFK 678
Query: 632 GAVKRITDR-NIGKVSPLLYQ-LRFIYNELVAQQLEKHMQDIELPAIKFASKSSRLGDMI 689
V++IT + +GK+ + + + V Q L K D A+ +RL M+
Sbjct: 679 KKVQQITQKAQMGKLKTQPGKGMMDSFEASVNQCLNKARDDCGNMALADLQSWNRLKAMV 738
Query: 690 DSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLL 749
+ SK + ++Q + +GQQ V G+ G HF D Y G +
Sbjct: 739 YAGSKGSNLNISQIMACVGQQ-NVEGKRIPFGFHRRSLPHF------SKDDYGPESKGFV 791
Query: 750 KGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVC 809
+ C+ +GL P E H++ RE ++ ++ +E G + + L+ L DV+V YDGTVR
Sbjct: 792 ENCYLNGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKALEDVMVKYDGTVR-TS 850
Query: 810 SNSIIQFEYGLKAGDNASYLFPAGEHV 836
IIQF YG AGEH+
Sbjct: 851 KEQIIQFLYGEDGM--------AGEHI 869
>G8ZUZ8_TORDC (tr|G8ZUZ8) DNA-directed RNA polymerase OS=Torulaspora delbrueckii
(strain ATCC 10662 / CBS 1146 / NBRC 0425 / NCYC 2629 /
NRRL Y-866) GN=TDEL0E01990 PE=3 SV=1
Length = 1460
Score = 184 bits (468), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 210/883 (23%), Positives = 350/883 (39%), Gaps = 128/883 (14%)
Query: 45 NPFLGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLK- 103
+P +G+ C +C + A C GHFG+I+L +P++H + ++L +C NC
Sbjct: 55 DPKMGVSSSSLECTTCHGNLAS-CHGHFGHIKLALPVFHVGYFKATIQILQGICKNCSAV 113
Query: 104 ----------MKKTKFPSSSS----GLAQRLLSPC-----CQEPNAAQVSIREVKTGDGA 144
+ + + P + G+ ++L C C + A +++ G G+
Sbjct: 114 LLDDHDRRHFLSELRRPGVDNLRRMGILSKVLDQCKKQRRCLQCGALNGVVKKAAAGSGS 173
Query: 145 CYLVL-----------KVSKSKMQDGFWRFLDKYGYRYEVDHTRA---LLPCEVMEMIKR 190
L + V + G W + + E R L P + + + K+
Sbjct: 174 ASLKIIHDTFRWAGKKSVPEKDKWVGDWDEVLSHNPELERYVKRCMDDLNPLKTLNLFKQ 233
Query: 191 FPLETKKKL----AGKGYFPQDGYVIKYLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKL 246
E + L + K P+ Y+ +YLP PP C+ L ++
Sbjct: 234 LKPEDCELLGIDSSNKSGRPET-YIWRYLPAPPVCIRPSVMMQDSPASNEDDLTVKLTEI 292
Query: 247 LRKVEVIRSSRSGEPNFESHQVEANDLQSVVDQYLQ--------IRGCAKPARDIETHFG 298
+ +I+S + + + LQ V Y+ + G + ++ G
Sbjct: 293 VWTSSLIKSGLEKGISINNMMEHWDYLQLSVAMYINSDSVNPAMMPGASSGGGKVKPIRG 352
Query: 299 VNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEER 358
+ L K + + K FS R+VI+ D I+EV +P +A+ +T+ E+
Sbjct: 353 FCQRL-----KGKQGRFRGNLSGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTYPEK 407
Query: 359 VNSHNMCYLQKLV--------DENLCLAYKEGVSTYSLREGS--KGHTYLKPGQIVHRRI 408
V +N LQ+L+ N L E + +LR G K L+ G +V R +
Sbjct: 408 VTRYNRQKLQQLLINGPNVHPGANYLLKKDED-ARRNLRYGDRVKLAKNLRVGDVVERHL 466
Query: 409 MDGDIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLA 468
DGD+V NR P+ H+ S+ + I T ++N +C P ADFDGD ++L PQ+
Sbjct: 467 EDGDVVLFNRQPSLHRLSILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEE 526
Query: 469 AKAEVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKK-GFMDRAAANQMAMFLS-- 525
A+AE + L V+ LL+ K F DR + Q+ +S
Sbjct: 527 ARAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFFDRGSLTQLLSMMSDG 586
Query: 526 ---LPLPQPALLKAGSGDCY-WTSTQILQC---------------------------ALP 554
+P PA++K CY WT Q+ +LP
Sbjct: 587 NLQFDIPAPAIMKP----CYLWTGKQVFSLLIKPNKKSPVVINLDAKNKVFIPPKSKSLP 642
Query: 555 LSFDCTGGRYLIRESDILGFDLGRDVL-PAVINEIAASVFFGKGPQEALNFFDVLQPFLM 613
G +IR S+IL + + VL + + ++ GPQEA N + +
Sbjct: 643 SEMSQNDGYVIIRGSEILSGVMDKSVLGDGKKHSVFYTILRDYGPQEAANAMNRMAKLCA 702
Query: 614 ECIFSNGFSVGLHDFSISGAVKRITDRNIGKVSPLLYQLRFIYN--ELVAQQLEKHMQDI 671
+ + GFS+G+ D + + +K+ + + +L YN +L Q Q +
Sbjct: 703 RYLGNRGFSIGISDVTPADDLKKKKEDMVEFAYAKCDELIDSYNKGKLETQPGCNEEQTL 762
Query: 672 ELPAIKFASK-SSRLGD--------------MIDSKSKSALDKVTQQIGFLGQQLFVRGR 716
E SK +GD M SK + V+Q + +GQQ+ + G
Sbjct: 763 EAKIGGLLSKVREEVGDVCINELDNLNAPLIMATCGSKGSTLNVSQMVAVVGQQI-ISGN 821
Query: 717 LYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRS 776
G + HF P ++ G ++ FF GL P E L H+IS RE +V +
Sbjct: 822 RVPDGFQDRSLPHFP-----KNSKTPQSK-GFVRNSFFSGLTPPEFLFHAISGREGLVDT 875
Query: 777 SRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 819
+ +E G + + LM L D+ YD TVR SN I+QF YG
Sbjct: 876 AVKTAETGYMSRRLMKSLEDLSCQYDNTVRT-SSNGIVQFTYG 917
>A8N128_COPC7 (tr|A8N128) DNA-directed RNA polymerase OS=Coprinopsis cinerea
(strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003)
GN=CC1G_11229 PE=3 SV=2
Length = 1745
Score = 184 bits (468), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 148/560 (26%), Positives = 239/560 (42%), Gaps = 66/560 (11%)
Query: 314 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLVDE 373
+++ + K FS+R+VITGD ++EVG+P IA +T+ ERV +N+ YLQ+LV
Sbjct: 350 RLRGNLMGKRVDFSARTVITGDPNLELDEVGVPKSIAMNLTYPERVTPYNIAYLQELV-- 407
Query: 374 NLCLAYKEGVSTYS--------------LREGSKGHTYLKPGQIVHRRIMDGDIVFINRP 419
+ G +TY LR + +L+ G IV R + DGD V NR
Sbjct: 408 ------RNGPTTYPGARYVVRDTGERIDLRYNKRADAFLQLGWIVERHLKDGDYVLFNRQ 461
Query: 420 PTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSV 479
P+ HK S+ + V + T ++N + P ADFDGD +++ PQS +AE+ ++ V
Sbjct: 462 PSLHKMSMMSHRVRLMPYSTFRLNLSVTPPYNADFDGDEMNMHVPQSEETRAELSQIAWV 521
Query: 480 EKQLLSSHXXXXXXXXXXXXX-XXXXXXVKKGFMDRAAANQMAMFLSL---PLPQPALLK 535
+Q++S ++ F+D + +++ +P PA+LK
Sbjct: 522 PRQIVSPQANKPVMGIVQDTLCGIRKFTLRDTFLDWNHVQNILLWVPEWDGVVPTPAILK 581
Query: 536 AGSGDCYWTSTQILQCALPLSFDCTGGR------------YLIRESDILGFDLGRDVLPA 583
WT QIL +P + LI + + + + ++ A
Sbjct: 582 PKP---LWTGKQILSLTIPRGINIQRASENKSSNPVFDDGMLIENGEFIYGIVDKKIVGA 638
Query: 584 VINEIAASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHDFSISGAVKRITDRNIG 643
+ VF KGP+ F LQ + +F NGFS+G+ D +NI
Sbjct: 639 SAGGLVHVVFREKGPEATKQLFTGLQMIVNFWLFHNGFSIGIGDTIADARTMEFITKNIA 698
Query: 644 KVSPLLYQ-----------------LRFIYNELVAQQLEKHMQDIELPAIKFASKSSRLG 686
+ + Q LR + V L K A K + + +
Sbjct: 699 ESKAKVAQVIEDANMDRLKTKPGMTLRESFESEVEGILNKARDSSGQYAQKHLKEDNNVK 758
Query: 687 DMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEY 746
M+ + SK + ++Q +GQQ V GR G HF D +
Sbjct: 759 QMVVAGSKGSFINISQMSVCVGQQ-SVEGRRIPFGFRHRTLPHFT------KDDFSPEAR 811
Query: 747 GLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVR 806
G ++ + GL P E H+++ RE ++ ++ +E G + + L+ L DV+VCYDGTVR
Sbjct: 812 GFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMVCYDGTVR 871
Query: 807 NVCSNSIIQFEYGLKAGDNA 826
N + +IQF YG D A
Sbjct: 872 NSLGD-LIQFVYGEDGMDAA 890
>Q5S1Y0_9HOMO (tr|Q5S1Y0) DNA-directed RNA polymerase (Fragment) OS=Boletellus
projectellus GN=RPB1 PE=3 SV=2
Length = 997
Score = 184 bits (466), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 147/561 (26%), Positives = 250/561 (44%), Gaps = 68/561 (12%)
Query: 314 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLVDE 373
+++ + K FS+R+VITGD ++EVG+P IA +T+ ERV +N+ YLQ+LV
Sbjct: 251 RLRGNLMGKRVDFSARTVITGDPNLELDEVGVPRSIAMNLTYPERVTPYNIAYLQELV-- 308
Query: 374 NLCLAYKEGVSTY--------------SLREGSKGHTYLKPGQIVHRRIMDGDIVFINRP 419
+ G STY LR + +L+ G IV R + DGD V NR
Sbjct: 309 ------RNGPSTYPGARYVVRDTGERIDLRYNKRADAFLQYGWIVERHLKDGDFVLFNRQ 362
Query: 420 PTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSV 479
P+ HK S+ + V + T ++N + P ADFDGD +++ PQS +AE+ ++ V
Sbjct: 363 PSLHKMSMMSHRVKLMPYSTFRLNLSVTPPYNADFDGDEMNMHIPQSEETRAELSQIAWV 422
Query: 480 EKQLLSSHXXXXXXXXXXXXX-XXXXXXVKKGFMDRAAANQMAMFLSL---PLPQPALLK 535
+Q++S ++ F+D + +++ +P PA++K
Sbjct: 423 PRQIISPQANKPVMGIVQDTLCGIRKFTLRDTFLDWQQVQNILLWVPEWDGNVPTPAIIK 482
Query: 536 AGSGDCYWTSTQILQCALPLSFDCTGGR------------YLIRESDILGFDLGRDVLPA 583
WT QI+ +P + ++ +IL + + + A
Sbjct: 483 PKP---LWTGKQIISMVIPRGINIHRAPEPKSSNPLFDDGMMVDNGEILFGIVDKKTVGA 539
Query: 584 VINEIAASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHDFSISGA------VKRI 637
+ VF KGP+ + F +Q + +F NGFS+G+ D +I+G +RI
Sbjct: 540 TQGGLIHVVFREKGPEATRSVFTGIQMVVNFWLFHNGFSIGIGD-TIAGPNVMEFITRRI 598
Query: 638 TDR--NIGKVSPLLYQ----------LRFIYNELVAQQLEKHMQDIELPAIKFASKSSRL 685
D+ + ++ Y +R + V ++L + D A K + + +
Sbjct: 599 KDKKQQVAEIIEDAYNDRLKPMPGMTIRESFESKVERELNRARDDSGQYAQKNLKEDNNV 658
Query: 686 GDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAE 745
M+ + SK + ++Q +GQQ V GR G HF D +
Sbjct: 659 KQMVTAGSKGSYINISQMSVCVGQQ-SVEGRRIPFGFRHRTLPHFT------KDDFSPEA 711
Query: 746 YGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTV 805
G ++ + GL P E H+++ RE ++ ++ +E G + + L+ L DV+VCYDGTV
Sbjct: 712 RGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMVCYDGTV 771
Query: 806 RNVCSNSIIQFEYGLKAGDNA 826
RN + ++QF YG D A
Sbjct: 772 RNSLGD-LVQFIYGEDGMDGA 791
>H3AVP5_LATCH (tr|H3AVP5) DNA-directed RNA polymerase (Fragment) OS=Latimeria
chalumnae PE=3 SV=1
Length = 1920
Score = 184 bits (466), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 214/863 (24%), Positives = 348/863 (40%), Gaps = 117/863 (13%)
Query: 45 NPFLGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKM 104
+P G+ GRC++C +C GHFG+IEL P+YH +++ K+L VC C K+
Sbjct: 28 DPRQGVIERTGRCQTCA-GNMTECPGHFGHIELAKPVYHVGFLTKTMKVLRCVCFFCSKL 86
Query: 105 KKTKFPSSSSGLAQRLLSPCCQEPNAAQVSIREVKTGDGAC---------YLVLK----- 150
S++ + +L+ +P + ++ G C + V +
Sbjct: 87 ----LVDSNNPKIKDILTKSKGQPRKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPDGDE 142
Query: 151 -VSKSKMQDGFWRF--------LDKYGYRYEVDH----TRALL-PCEVMEMIKRFPLETK 196
++K K G R+ L+ Y V+ + LL P V E+ KR E
Sbjct: 143 DLTKEKGHGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLNPERVHEIFKRISDEEC 202
Query: 197 KKLAGKGYFPQDGY-VIKYLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEVIRS 255
L F + + ++ LPVPP + KL V++
Sbjct: 203 IILGMDPKFARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDD----LTHKLADIVKINNQ 258
Query: 256 SRSGEPNFESHQVEANDLQ-------SVVDQYLQ--IRGCAKPARDIETHFGVNKELSDA 306
R E N + V A D++ ++VD L R K R +++ + + L
Sbjct: 259 LRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKS---LKQRL--- 312
Query: 307 SNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCY 366
K +++ + K FS+R+VIT D I++VG+P IA +TF E V N+
Sbjct: 313 --KGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFPEIVTPFNIDR 370
Query: 367 LQKLVDE--NLCLAYKEGVSTYSLREGSKGHT-----YLKPGQIVHRRIMDGDIVFINRP 419
LQ+LV N K V R + H +L+ G V R + DGDIV NR
Sbjct: 371 LQELVRRGNNQYPGAKYIVRDNGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQ 430
Query: 420 PTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSV 479
PT HK S+ V I T ++N + P ADFDGD ++L PQSL +AE+ EL V
Sbjct: 431 PTLHKMSMMGHKVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMV 490
Query: 480 EKQLLSSHXXXXXXXXXXXXXXXXXXXVKKG-FMDRAAANQMAMFLSL---PLPQPALLK 535
+ +++ K+ FMDR + MFLS +PQPA+LK
Sbjct: 491 PRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFMDRGEVMNLLMFLSTWDGKVPQPAILK 550
Query: 536 AGSGDCYWTSTQILQCALPLSFDCT-----------GGRY----------LIRESDILGF 574
+WT QI +P +C G Y ++ +++
Sbjct: 551 PRP---FWTGKQIFSLIIPGHINCIRTHSTHPDDEDNGPYKHISPGDTKVVVENGELIMG 607
Query: 575 DLGRDVLPAVINEIAASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHDFSISGA- 633
L + L + + G F+ +Q + + G ++G+ D SI+ A
Sbjct: 608 ILCKKSLGTSAGSLVHISYLEMGHDVTRLFYSNIQTVINNWLLIEGHTIGIGD-SIADAK 666
Query: 634 ----------------VKRITDRNIGKVSPLL-YQLRFIYNELVAQQLEKHMQDIELPAI 676
++ I + ++ P LR + V + L A
Sbjct: 667 TYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQ 726
Query: 677 KFASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDY 736
K S+ + M+ S +K + ++Q I +GQQ V G+ G HF +K DY
Sbjct: 727 KSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQ-NVEGKRIPFGFKHRTLPHF-IKDDY 784
Query: 737 DGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRD 796
+ G ++ + GL P E H++ RE ++ ++ +E G + + L+ +
Sbjct: 785 GPE-----SRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMES 839
Query: 797 VVVCYDGTVRNVCSNSIIQFEYG 819
V+V YD T+RN N ++Q YG
Sbjct: 840 VMVKYDATIRNSI-NQVVQLRYG 861
>I3JRW6_ORENI (tr|I3JRW6) DNA-directed RNA polymerase OS=Oreochromis niloticus
GN=LOC100709712 PE=3 SV=1
Length = 1966
Score = 183 bits (464), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 216/881 (24%), Positives = 348/881 (39%), Gaps = 133/881 (15%)
Query: 45 NPFLGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKM 104
+P G+ GRC++C +C GHFG+IEL P++H +S++ K+L VC C K+
Sbjct: 57 DPRQGVIERTGRCQTCA-GNMTECPGHFGHIELAKPVFHVGFISKIMKVLRCVCFFCSKL 115
Query: 105 KKTKFPSSSSGLAQRLLSPCCQEPNAAQVSIREVKTGDGACY---------------LVL 149
S++ + +L+ +P + E+ G C
Sbjct: 116 ----LVDSNNPKIKDILAKSKGQPRKRLTHVYELCKGKNICEGGEEMDNKFGMEQQETEE 171
Query: 150 KVSKSKMQDGFWRF--------LDKYGYRYEVDHTRA-----LLPCEVMEMIKRFPLETK 196
++K K G R+ L+ Y V+ L P V E+ KR E
Sbjct: 172 DLTKEKGHGGCGRYQPRIKRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEED 231
Query: 197 KKLAGKGYFPQDGY-VIKYLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEVIRS 255
L F + + ++ LPVPP + KL V++
Sbjct: 232 IILGMDPKFARPEWMIVTVLPVPPLAVRPAVVMQGSARNQDD----LTHKLADIVKINNQ 287
Query: 256 SRSGEPNFESHQVEANDLQ-------SVVDQYLQ--IRGCAKPARDIETHFGVNKELSDA 306
R E + + V A D++ ++VD L R K R +++ + + L
Sbjct: 288 LRRNEQSGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKS---IKQRL--- 341
Query: 307 SNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCY 366
K +++ + K FS+R+VIT D +I++VG+P IA +TF E V N+
Sbjct: 342 --KGKEGRVRGNLMGKRVDFSARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDR 399
Query: 367 LQKLVDENLCLAYKEGVSTYS--------------LREGSK-GHTYLKPGQIVHRRIMDG 411
LQ+LV + G S Y LR K +L+ G V R + DG
Sbjct: 400 LQELV--------RRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQIGYKVERHMCDG 451
Query: 412 DIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKA 471
DIV NR PT HK S+ V I T ++N + P ADFDGD ++L PQSL +A
Sbjct: 452 DIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRA 511
Query: 472 EVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKKG-FMDRAAANQMAMFLSL---P 527
E+ EL V + +++ K+ F++R + MFLS
Sbjct: 512 EIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGK 571
Query: 528 LPQPALLKAGSGDCYWTSTQILQCALPLSF-----------DCTGGRY----------LI 566
+PQPA+LK WT QI +P D G Y ++
Sbjct: 572 MPQPAILKPRP---LWTGKQIFSLIIPGHINVIRTHSTHPDDEDSGPYKHISPGDTKVIV 628
Query: 567 RESDILGFDLGRDVLPAVINEIAASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLH 626
+++ L + L + + G F+ +Q + + G S+G+
Sbjct: 629 ENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVVNNWLLIEGHSIGIG 688
Query: 627 D--------FSISGAVKR--------ITDRNIGKVSPLL-YQLRFIYNELVAQQLEKHMQ 669
D I +K+ I + ++ P LR + V + L
Sbjct: 689 DSIADAKTYLDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARD 748
Query: 670 DIELPAIKFASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASH 729
A K S+ + M+ + SK + ++Q I +GQQ V G+ G H
Sbjct: 749 KTGSSAQKSLSEYNNFKSMVVAGSKGSKINISQVIAVVGQQ-NVEGKRIPFGFKHRTLPH 807
Query: 730 FKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKN 789
F +K DY + G ++ + GL P E H++ RE ++ ++ +E G + +
Sbjct: 808 F-IKDDYGPES-----RGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRR 861
Query: 790 LMAILRDVVVCYDGTVRNVCSNSIIQFEYGLK--AGDNASY 828
L+ + V+V YDGTVRN N ++Q YG AG+N +
Sbjct: 862 LIKSMESVMVKYDGTVRNSI-NQVVQLRYGEDGLAGENVEF 901
>K0IC33_NITGG (tr|K0IC33) DNA-directed RNA polymerase OS=Nitrososphaera gargensis
(strain Ga9.2) GN=rpoA PE=3 SV=1
Length = 1273
Score = 183 bits (464), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 218/854 (25%), Positives = 346/854 (40%), Gaps = 132/854 (15%)
Query: 52 LEYG-RCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKMKKTKFP 110
LE G +C +CG + A KC GHFG+IEL P+ H + V ++ K+L + C +C ++K
Sbjct: 54 LEPGQKCATCGNTSA-KCPGHFGHIELAEPVLHIAFVDDIHKLLLISCRSCNRIK----- 107
Query: 111 SSSSGLAQRLLSPCCQEPNAAQVSIREVKTGDGACYLVLKVSKSKMQDGFWRFLDKYGY- 169
L P E SIR+ K A Y V+ + ++D K
Sbjct: 108 ----------LEP---EELTHYKSIRDTK----AAYAVITLEN--IKDEIIERAKKVKVC 148
Query: 170 ------RYEVDHTRA-------------LLPCEVMEMIKRFPLETKKKLAGKGYFPQDG- 209
+Y++ T+ LLP + E + P L GY P+
Sbjct: 149 PHCGKEQYDLIFTKPTIFVEKTDAGENRLLPITIRERLSHIP---DDDLTLLGYDPRTAR 205
Query: 210 ---YVIKYLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEVIRSSRSGEPNFESH 266
+V++ LPVPP + + + + S +G P
Sbjct: 206 PEWFVLQVLPVPPVTVRPSIILETGIRSEDDLTHKLVDIIRVNQRLKESKEAGTPPLIVQ 265
Query: 267 QVEANDLQSVVDQYLQIRGCAKPARDIETHFGVNKELSDASN--KAWLDKMKSLFISKGS 324
+ + LQ V Y P + H + L + K + + K
Sbjct: 266 DL-VDLLQYHVTTYFDNEVSGIP----QAHHRSGRPLKTLTQRLKGKEGRFRGSLSGKRV 320
Query: 325 GFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLVDENLCLAYKEGVS 384
FSSR+VI+ D I +VG+P ++A+++T E V+ N+ L++LV N Y +
Sbjct: 321 DFSSRTVISPDPNLTIADVGVPTDVAKKLTIPETVSQWNVERLKELV-MNGPNTYPG--A 377
Query: 385 TYSLR-EGSKGHT-----------YLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALVV 432
Y +R +G K L PG IV R + DGDIV NR P+ H+ S+ A V
Sbjct: 378 NYIIRPDGVKIRLDYVTDRKAIADSLAPGYIVERHLADGDIVIFNRQPSLHRMSIMAHSV 437
Query: 433 YIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHXXXXX 492
+ T +++P +C P ADFDGD ++L PQS A+AE L V+ QL+S
Sbjct: 438 KVLPYRTFRLHPAVCPPYNADFDGDEMNLHVPQSEEARAEATLLMRVQDQLISPRYGGPI 497
Query: 493 XXXXXXXXXXXXXXVKKGFM---DRAAANQMAMFLSLPLPQPALLKAGSGDCYWTSTQIL 549
+ G D A M PLP+PA+ K G ++ Q+
Sbjct: 498 IGGIRDFITGAFMLTRDGTTLTKDEFANLAMIGGYEGPLPEPAITK--DGQRLYSGRQLF 555
Query: 550 QCALPLSFDCT------------GGRYLIRESDILG-----FDLGRDVLPAVINEIAASV 592
LP F+ G +I+ +++ +G + +V++ IA
Sbjct: 556 SLFLPKDFNFIITSKWNKAAKGEGKDVVIKNGELISGVIDKASIGAEEPDSVLHRIAKDY 615
Query: 593 FFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHDFSISGAVKRITDRNIGKVSPLLYQL 652
G A F D + L I GF+ G D +S ++ + I K +Y+L
Sbjct: 616 ----GTNAARKFLDSILTMLKTYITHRGFTYGYSDLWLSPETRQEINDIIQKTYEKVYEL 671
Query: 653 RFIYNE--------LVAQQ-LEKHMQDIELPAIKFASKSSRLGD-----------MIDSK 692
YN+ L A++ LE ++ + EL + ++ R D M +
Sbjct: 672 IQQYNDGTLPLTRGLAAEEALELYVVN-ELSRAR--DRAGRTADRAFPDENSGVIMASTG 728
Query: 693 SKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGC 752
++ + + Q LGQQ +RG+ KG SHFK D P A+ G +K
Sbjct: 729 ARGSTLNIGQMTAALGQQ-SIRGKRIQKGYHNRALSHFK-----PNDANPDAK-GFVKSN 781
Query: 753 FFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNS 812
+ GL P E H++ RE +V ++ + G + + L+ L + + YD TVR+ N
Sbjct: 782 YRDGLSPLEFFFHAMGGREGLVDTAVRTQQSGYMQRRLINALEHLKIEYDQTVRDPHGN- 840
Query: 813 IIQFEYGLKAGDNA 826
I+Q+ YG D A
Sbjct: 841 IVQYLYGEDGIDPA 854
>D9ZB63_9ARCH (tr|D9ZB63) DNA-directed RNA polymerase (Fragment) OS=Candidatus
Nitrososphaera gargensis PE=3 SV=1
Length = 1273
Score = 183 bits (464), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 218/854 (25%), Positives = 346/854 (40%), Gaps = 132/854 (15%)
Query: 52 LEYG-RCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKMKKTKFP 110
LE G +C +CG + A KC GHFG+IEL P+ H + V ++ K+L + C +C ++K
Sbjct: 54 LEPGQKCATCGNTSA-KCPGHFGHIELAEPVLHIAFVDDIHKLLLISCRSCNRIK----- 107
Query: 111 SSSSGLAQRLLSPCCQEPNAAQVSIREVKTGDGACYLVLKVSKSKMQDGFWRFLDKYGY- 169
L P E SIR+ K A Y V+ + ++D K
Sbjct: 108 ----------LEP---EELTHYKSIRDTK----AAYAVITLEN--IKDEIIERAKKVKVC 148
Query: 170 ------RYEVDHTRA-------------LLPCEVMEMIKRFPLETKKKLAGKGYFPQDG- 209
+Y++ T+ LLP + E + P L GY P+
Sbjct: 149 PHCGKEQYDLIFTKPTIFVEKTDAGENRLLPITIRERLSHIP---DDDLTLLGYDPRTAR 205
Query: 210 ---YVIKYLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEVIRSSRSGEPNFESH 266
+V++ LPVPP + + + + S +G P
Sbjct: 206 PEWFVLQVLPVPPVTVRPSIILETGIRSEDDLTHKLVDIIRVNQRLKESKEAGTPPLIVQ 265
Query: 267 QVEANDLQSVVDQYLQIRGCAKPARDIETHFGVNKELSDASN--KAWLDKMKSLFISKGS 324
+ + LQ V Y P + H + L + K + + K
Sbjct: 266 DL-VDLLQYHVTTYFDNEVSGIP----QAHHRSGRPLKTLTQRLKGKEGRFRGSLSGKRV 320
Query: 325 GFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLVDENLCLAYKEGVS 384
FSSR+VI+ D I +VG+P ++A+++T E V+ N+ L++LV N Y +
Sbjct: 321 DFSSRTVISPDPNLTIADVGVPTDVAKKLTIPETVSQWNVERLKELV-MNGPNTYPG--A 377
Query: 385 TYSLR-EGSKGHT-----------YLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALVV 432
Y +R +G K L PG IV R + DGDIV NR P+ H+ S+ A V
Sbjct: 378 NYIIRPDGVKIRLDYVTDRKAIADSLAPGYIVERHLADGDIVIFNRQPSLHRMSIMAHSV 437
Query: 433 YIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHXXXXX 492
+ T +++P +C P ADFDGD ++L PQS A+AE L V+ QL+S
Sbjct: 438 KVLPYRTFRLHPAVCPPYNADFDGDEMNLHVPQSEEARAEATLLMRVQDQLISPRYGGPI 497
Query: 493 XXXXXXXXXXXXXXVKKGFM---DRAAANQMAMFLSLPLPQPALLKAGSGDCYWTSTQIL 549
+ G D A M PLP+PA+ K G ++ Q+
Sbjct: 498 IGGIRDFITGAFMLTRDGTTLTKDEFANLAMIGGYEGPLPEPAITK--DGQRLYSGRQLF 555
Query: 550 QCALPLSFDCT------------GGRYLIRESDILG-----FDLGRDVLPAVINEIAASV 592
LP F+ G +I+ +++ +G + +V++ IA
Sbjct: 556 SLFLPKDFNFIITSKWNKAAKGEGKDVVIKNGELISGVIDKASIGAEEPDSVLHRIAKDY 615
Query: 593 FFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHDFSISGAVKRITDRNIGKVSPLLYQL 652
G A F D + L I GF+ G D +S ++ + I K +Y+L
Sbjct: 616 ----GTNAARKFLDSILTMLKTYITHRGFTYGYSDLWLSPETRQEINDIIQKTYEKVYEL 671
Query: 653 RFIYNE--------LVAQQ-LEKHMQDIELPAIKFASKSSRLGD-----------MIDSK 692
YN+ L A++ LE ++ + EL + ++ R D M +
Sbjct: 672 IQQYNDGTLPLTRGLAAEEALELYVVN-ELSRAR--DRAGRTADRAFPDENSGVIMASTG 728
Query: 693 SKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGC 752
++ + + Q LGQQ +RG+ KG SHFK D P A+ G +K
Sbjct: 729 ARGSTLNIGQMTAALGQQ-SIRGKRIQKGYHNRALSHFK-----PNDANPDAK-GFVKSN 781
Query: 753 FFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNS 812
+ GL P E H++ RE +V ++ + G + + L+ L + + YD TVR+ N
Sbjct: 782 YRDGLSPLEFFFHAMGGREGLVDTAVRTQQSGYMQRRLINALEHLKIEYDQTVRDPHGN- 840
Query: 813 IIQFEYGLKAGDNA 826
I+Q+ YG D A
Sbjct: 841 IVQYLYGEDGIDPA 854
>Q2PYR1_9FUNG (tr|Q2PYR1) DNA-directed RNA polymerase (Fragment) OS=Spiromyces
aspiralis GN=RPB1 PE=3 SV=1
Length = 1022
Score = 182 bits (463), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 222/908 (24%), Positives = 369/908 (40%), Gaps = 152/908 (16%)
Query: 74 YIELPVPIYHPSHVSELKKMLSLVCLNCLKMKK------------TKFPSSSSGLAQRL- 120
+IEL P+YH + +K++L VC C K+K K P+ S + L
Sbjct: 1 HIELARPVYHAGFSTRVKRVLECVCWYCSKLKADESDPEFVLAQAQKNPNLRSQMIWNLC 60
Query: 121 -------LSPCCQEPNA-------------AQVSIREV-----KTGDGAC---YLVLKVS 152
+S E NA Q ++RE+ K G C S
Sbjct: 61 KSRTVCGVSNAEAEENAMKKAFGDSDPDRRTQNAVREMMGENKKRSHGGCGHRQPQFYKS 120
Query: 153 KSKMQDGFWRFLDKYGYRYEVDHTRALLPCEVMEMIKRFPLETKKKLAGKGYFPQ----D 208
+ K++ F R G + L +V++++KR E + G PQ +
Sbjct: 121 ELKLKADFKR---ATGEEGGAGGRQTLTVTQVLQVLKRISDEDAYAM---GLDPQYARPE 174
Query: 209 GYVIKYLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEVIRSSR-SGEP-----N 262
++ +PVPP + L +L+ +RS G P +
Sbjct: 175 WMIMTVMPVPPMAVRPSIQMDAVRQSEDDLTYK-LNDILKANARVRSCEVDGAPMHIIED 233
Query: 263 FES----HQVE-ANDLQSVVDQYLQIRGCAKPARDIETHFGVNKELSDASNKAWLDKMKS 317
FES H V N+ S + Q LQ G +P R I K +++
Sbjct: 234 FESLLQFHVVTFMNNEISGLPQALQKSG--RPIRSIRARL-----------KGKEGRLRG 280
Query: 318 LFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLV----DE 373
+ K FS+R+VITGD I+EVG+P IA+ +T+ E V +N+ LQ+LV E
Sbjct: 281 NLMGKRVDFSARTVITGDPNISIDEVGVPRSIARNLTYPEVVTPYNIEKLQELVRNGPTE 340
Query: 374 NLCLAY--KEGVSTYSLREGSKG-HTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQAL 430
+ Y ++ LR +G L G V R IMDGD+V NR P+ HK S+
Sbjct: 341 HPGAKYVIRDTGERIDLRYNKRGGDIPLAIGYRVERHIMDGDVVIFNRQPSLHKMSMMGH 400
Query: 431 VVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHXXX 490
V + T ++N + P ADFDGD +++ PQS ++AE+ E+ V +Q++S
Sbjct: 401 RVRVLPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSEESRAEIKEICMVPRQIISPQANS 460
Query: 491 XXXXXXXXXXXXXXXXVKK-GFMDRAAANQMAMFLSLP-----LPQPALLKAGSGDCYWT 544
++ FM + M + + +P +P PA++K WT
Sbjct: 461 PVMGIVQDTLCAIRKFTRRDNFMAKDLV--MNILMHIPDWDGTVPTPAIIKPKP---LWT 515
Query: 545 STQILQCALPLSFDCT-----------------GGRYLIRESDILGFDLGRDVLPAVINE 587
QI A+P +C R +I + ++L + + + A
Sbjct: 516 GKQIYSLAIPKGINCLRFHSTHPDNETTFVSPGDTRVIIEDGELLAGIICKKTVDASEGS 575
Query: 588 IAASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHD--------FSISGAVKRITD 639
+ V +GP+ A FF+ Q + NGFS+G+ D ++S +K D
Sbjct: 576 LVHVVMAERGPEVAKKFFNTTQRIVDYWFLQNGFSIGIGDTIADDDTMLNVSNIIKEAYD 635
Query: 640 RNIGKVSPLLYQLR---------FIYNELVAQQLEKHMQDIELPAIKFASK----SSRLG 686
R V ++ + Y E ++ K + A K + S+ +
Sbjct: 636 R----VDQIIIDAQEDRMEAMPGMTYRESFENRVNKELNRARDQAGKLVQQRLKESNNVR 691
Query: 687 DMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEY 746
M+ + SK + V+Q +GQQ V G+ G HF D Y A
Sbjct: 692 QMVVAGSKGSYINVSQMTAAVGQQ-NVEGKRIPFGFRYRTLPHFA------KDDYSPASK 744
Query: 747 GLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVR 806
G ++ + GL P E H++ RE ++ ++ +E G + + L+ L D++V YDG+VR
Sbjct: 745 GFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKALEDLMVQYDGSVR 804
Query: 807 NVCSNSIIQFEYGLKAGDNASYLFPAGEHVGVLAAT--AMSNPAYKAVLDAS---PSSNC 861
N I+QF YG + G ++++L G+ V ++ + + + V+D+ PS
Sbjct: 805 NSLG-QIVQFTYG-EDGMDSTHL--EGQSVNLVRYSDKKFESTYFVDVMDSEKSFPSGTL 860
Query: 862 SWELMKEI 869
+ ++K +
Sbjct: 861 EFSVLKNV 868
>Q6CBQ3_YARLI (tr|Q6CBQ3) DNA-directed RNA polymerase OS=Yarrowia lipolytica
(strain CLIB 122 / E 150) GN=YALI0C16566g PE=3 SV=2
Length = 1750
Score = 182 bits (463), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 210/859 (24%), Positives = 346/859 (40%), Gaps = 111/859 (12%)
Query: 45 NPFLGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKM 104
+P LG +C++CG A +C GHFG+IEL P++H ++++KK+ VC +C
Sbjct: 57 DPRLGTIDRNFKCQTCGEGMA-ECPGHFGHIELAKPVFHIGFIAKIKKICESVCFHC--- 112
Query: 105 KKTKFPSSSSGLAQ--RLLSP---------CCQEPNAAQVSIRE-------VKTGDGACY 146
K ++ AQ R+ P C+ + + VK G C
Sbjct: 113 GKVLLDENNKQFAQAIRIRDPKRRFNAVWSLCKTKMVCETDVPTEDDGSGVVKHSHGGCG 172
Query: 147 LVLKVSKSKMQDGF-----WRFLDKYGYRYEVDHTRALLPCEVMEMIKRFPLETKKKLA- 200
+ + +DG W+ + R L P E++ + K E ++L
Sbjct: 173 ---NIQPTVRRDGLKLWGTWKRGKNGDDMGDSPEKRLLTPAEILNVFKHISSEDCQRLGL 229
Query: 201 GKGYFPQDGYVIKYLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEVIRSSRSGE 260
+ Y + +I LPVPP + L V R + G
Sbjct: 230 NEDYARPEWLIITTLPVPPPPVRPSIAINDTARGEDDLTYKLADILKANANVQRCEQEGA 289
Query: 261 P-----NFES---HQVEANDLQSVVDQYLQIRGCAKPARDIETHFGVNKELSDASNKAWL 312
P FES + V + Q ++ +P + I K
Sbjct: 290 PAHVVNEFESLLQYHVATYMDNDIAGQPQALQKSGRPVKSIRARL-----------KGKE 338
Query: 313 DKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLV- 371
+++ + K FS+R+VITGD +++VG+P IA+ +T+ E V N+ L + V
Sbjct: 339 GRLRGNLMGKRVDFSARTVITGDPNLELDQVGVPRSIARTLTYPEIVTPFNIHKLTEYVR 398
Query: 372 ---DENLCLAY--KEGVSTYSLREGSK-GHTYLKPGQIVHRRIMDGDIVFINRPPTTHKH 425
+E+ Y ++ LR + G L+ G V R +MD D V NR P+ HK
Sbjct: 399 NGPNEHPGAKYVIRDTGERIDLRYHKRAGDIALQYGWKVERHLMDNDPVLFNRQPSLHKM 458
Query: 426 SLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLS 485
S+ A V + T ++N + P ADFDGD ++L PQS +AE+ +L V Q++S
Sbjct: 459 SMMAHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCMVPLQIVS 518
Query: 486 SHXXXXXXXXXXXXX-XXXXXXVKKGFMDRAAANQMAMFLSLP-----LPQPALLKAGSG 539
++ F+D M + +P +P PA+LK
Sbjct: 519 PQSNKPVMGIVQDTLCGVRKMTIRDSFIDYDMV--MNILFWIPNWDGVVPTPAILKPKP- 575
Query: 540 DCYWTSTQILQCALPLS-----FD------CT--GGRYLIRESDILGFDLGRDVLPAVIN 586
WT Q++ +P FD C G Y+I + I+ + + + A
Sbjct: 576 --LWTGKQMVSMCIPKGIHLQRFDDQNPITCPKDNGMYII-DGQIMWGVVDKKTIGATGG 632
Query: 587 EIAASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHDFSISGAVKRITDRNI---- 642
+ ++ KG NFF +Q + + GFS+G+ D A R I
Sbjct: 633 GLVHTIMREKGSAVCCNFFGTIQKVVNFWLLHYGFSIGIGDTIADSATMRDVTETIEEAK 692
Query: 643 GKVSPLLYQLRFIYNELVA-------QQLEKHMQDIELPAIKFASKSSRLG--------D 687
KV ++ + N L A + E ++ + A A +S+ +
Sbjct: 693 KKVKEIILEAH--ANTLTAEAGMTMRESFEHNVSRVLNQARDTAGRSAEMSLKDLNNVKQ 750
Query: 688 MIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYG 747
M+ + SK + ++Q +GQQ+ V G+ G + HF C D Y G
Sbjct: 751 MVVAGSKGSFINISQMSACVGQQM-VEGKRVPFGFADRTLPHF---CK---DDYSPESKG 803
Query: 748 LLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRN 807
++ + GL P E H+++ RE ++ ++ +E G + + L+ L DV+V YDGTVRN
Sbjct: 804 FIENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMVQYDGTVRN 863
Query: 808 VCSNSIIQFEYGLKAGDNA 826
+ +IQF YG D A
Sbjct: 864 SLGD-VIQFVYGEDGLDGA 881
>K9ICM6_AGABB (tr|K9ICM6) DNA-directed RNA polymerase (Fragment) OS=Agaricus
bisporus var. bisporus (strain H97 / ATCC MYA-4626 /
FGSC 10389) GN=AGABI2DRAFT_215454 PE=3 SV=1
Length = 1800
Score = 182 bits (463), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 149/561 (26%), Positives = 247/561 (44%), Gaps = 68/561 (12%)
Query: 314 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLVDE 373
+++ + K FS+R+VITGD ++EVG+P IA +TF ERV +N+ YLQ+LV
Sbjct: 341 RLRGNLMGKRVDFSARTVITGDPNLELDEVGVPKSIAMNLTFPERVTPYNITYLQELV-- 398
Query: 374 NLCLAYKEGVSTYS--------------LREGSKGHTYLKPGQIVHRRIMDGDIVFINRP 419
+ G +TY LR + +L+ G IV R + DGD V NR
Sbjct: 399 ------RNGPTTYPGARYVVRDTGERIDLRYNKRADAFLQYGWIVERHLKDGDFVLFNRQ 452
Query: 420 PTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSV 479
P+ HK S+ + V + T ++N + P ADFDGD +++ PQS +AE+ ++ V
Sbjct: 453 PSLHKMSMMSHRVRLMPYSTFRLNLSVTPPYNADFDGDEMNMHVPQSEETRAELSQVAWV 512
Query: 480 EKQLLSSHXXXXXXXXXXXXX-XXXXXXVKKGFMDRAAANQMAMFLS---LPLPQPALLK 535
+Q++S ++ F+D + +++ +P PA+LK
Sbjct: 513 PRQIISPQANKPVMGIVQDTLCGVRKFTLRDCFLDWNHVQNILLWVPDWDGTIPTPAILK 572
Query: 536 AGSGDCYWTSTQILQCALPLSFDCTGGR------------YLIRESDILGFDLGRDVLPA 583
WT QIL +P + LI +++ + + + A
Sbjct: 573 PKP---LWTGKQILSMTIPRGINIHRSPDPKSSNPVFDDGMLIENGELIFGIVDKKTVGA 629
Query: 584 VINEIAASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHDF-----SISGAVKRIT 638
+ VF KGP+ F LQ + +F NGFS+G+ D ++S + I
Sbjct: 630 TQGGLVHVVFREKGPEVTRQLFTGLQRVVNFWLFHNGFSIGIGDTIADMKTMSYITQTII 689
Query: 639 DRNIGKVSPLL-------------YQLRFIYNELVAQQLEKHMQDIELPAIKFASKSSRL 685
+R +V+ ++ +R + +V +QL A K + + +
Sbjct: 690 ERK-AEVTKIIEDATHDRLKPKPGMTIRESFESMVERQLNLARDTSGQYAQKHLKEDNNV 748
Query: 686 GDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAE 745
M+ + SK + ++Q +GQQ V GR G HF D +
Sbjct: 749 KQMVVAGSKGSFINISQMSVCVGQQ-SVEGRRIPFGFRHRTLPHFT------KDDFTPES 801
Query: 746 YGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTV 805
G ++ + GL P E H+++ RE ++ ++ +E G + + L+ L DV+VCYDGTV
Sbjct: 802 RGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMVCYDGTV 861
Query: 806 RNVCSNSIIQFEYGLKAGDNA 826
RN + +IQF YG D A
Sbjct: 862 RNSLGD-LIQFVYGEDGMDGA 881
Score = 60.1 bits (144), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 56 RCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKMK 105
+C++CG + +C GHFG+IEL P++HP + ++KK+L +C+NC K+K
Sbjct: 68 KCQTCGEGMS-ECPGHFGHIELARPVFHPGFIVKVKKILECICVNCGKLK 116
>A4I766_LEIIN (tr|A4I766) DNA-directed RNA polymerase OS=Leishmania infantum
GN=RPOIILS PE=3 SV=1
Length = 1662
Score = 182 bits (462), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 207/832 (24%), Positives = 338/832 (40%), Gaps = 97/832 (11%)
Query: 52 LEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNC-LKMKKTKFP 110
EY CE+CG +C GHFGY+EL PI++ + + L VC C + T P
Sbjct: 64 FEYS-CETCGLKHP-ECPGHFGYVELAEPIFNINVFDVVLIALKCVCKYCGALLMDTNDP 121
Query: 111 SSSSGLAQ-------RLLSPCC-------QEPNAAQVSIREVKTGDGACY---LVLKVSK 153
S +A R+++ C ++ + R+ + G A L +KV++
Sbjct: 122 SEMKKIAHLQGLNRLRMVAKLCGSVCKRSKDIQGCEGKGRQPRIGRFAGIYPGLQIKVTQ 181
Query: 154 SKMQDGFWRFLDKYGYRYEVDHTRALLPCEVMEMIKRFPLETKKKLAGKGYFPQDGYVIK 213
+ QD W + V + AL +M RF P+D ++
Sbjct: 182 EE-QDYVWHAENARQVLDRVSDSDAL----IMGFDPRF------------CHPRD-LILT 223
Query: 214 YLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEVIRSSRSGEPNFESHQVEANDL 273
LP+PP + + + R +++ + SG + A
Sbjct: 224 VLPIPPPQVRPAVAFGSAKSDDELTHQ-IMSIVKRNIQLRKDKESGV-KAAVDRSRALLQ 281
Query: 274 QSVVDQYLQIRGCAKPARDIETHFGVNKELSDASN--KAWLDKMKSLFISKGSGFSSRSV 331
+ V + KPA+ G K+L + K +++ + K FS+R+V
Sbjct: 282 EHVATFFNNASTYYKPAK-----VGDTKKLKSLTERLKGKYGRLRGNLMGKRVDFSARTV 336
Query: 332 ITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLVDE------NLCLAYKEGVST 385
ITGD ++EVG+P +A +TF ERVN N L + V N + V+
Sbjct: 337 ITGDPNIDVDEVGVPFSVAMTLTFPERVNVINKKRLTEFVQRTTYPSANYIIRPNGNVTK 396
Query: 386 YSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALVVYIHDDHTVKINPL 445
+L + + +L G +V R ++DGD+V NR PT H+ S+ V + + +T ++N
Sbjct: 397 LALVK-DRNAVHLDVGDVVERHVIDGDVVLFNRQPTLHRMSMMGHRVRVLNYNTFRLNLS 455
Query: 446 ICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXX 505
P ADFDGD ++L PQSL KAE++E+ V K +S +
Sbjct: 456 CTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSYR 515
Query: 506 XV-KKGFMDRAAANQMAMFLSL-PLPQPALLKAGSGDCYWTSTQILQCALP--------- 554
K F+D+ +A++L L LP PA+LK WT QI LP
Sbjct: 516 LTDKDTFVDKYFIQSVALWLDLWELPIPAILKPRP---LWTGKQIFSLILPEVNHPASPY 572
Query: 555 --LSFDCTGGRYLIRESDILGFDLGRDVLPAVINEIAASVFFGKGPQEALNFFDVLQPFL 612
F + +I+ +L + + V+ A + +F +G E F + +Q
Sbjct: 573 DKPPFPHNDKKIMIQRGQLLVGAITKGVVGAAPGSLIHVIFNERGSDEVAKFINGVQRIT 632
Query: 613 MECIFSNGFSVGLHDFSISGA--------VKRITDRNIGKVSPLLYQLRFI--------- 655
+ FSVG+ D +++ A V T +++ K+ +
Sbjct: 633 TYFNYCFAFSVGVQD-TVADATTLKEMNNVLHKTRQSVEKIGAAANNGKLTRKAGMSLLQ 691
Query: 656 -YNELVAQQLEKHMQDIELPAIKFASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVR 714
+ V L K ++ A+ +++ MI++ SK + + Q F+GQQ V
Sbjct: 692 SFEADVNSALNKCREEAAKKALSNVRRTNSFKVMIEAGSKGSDLNICQIAVFVGQQ-NVA 750
Query: 715 GRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMV 774
G G HF L D Y G+ + GL P E H+++ RE ++
Sbjct: 751 GSRIPFGFRRRTLPHFML------DDYGETSRGMATRGYVEGLQPHEFYFHTMAGREGLI 804
Query: 775 RSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGLKAGDNA 826
++ S+ G L + L+ L DV YDGTVRN + +IQ YG D A
Sbjct: 805 DTAVKTSDTGYLQRKLVKALEDVHASYDGTVRN-ANQELIQLAYGEDGLDGA 855
>E9BN38_LEIDB (tr|E9BN38) DNA-directed RNA polymerase OS=Leishmania donovani
(strain BPK282A1) GN=LDBPK_312680 PE=3 SV=1
Length = 1662
Score = 182 bits (462), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 207/832 (24%), Positives = 338/832 (40%), Gaps = 97/832 (11%)
Query: 52 LEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNC-LKMKKTKFP 110
EY CE+CG +C GHFGY+EL PI++ + + L VC C + T P
Sbjct: 64 FEYS-CETCGLKHP-ECPGHFGYVELAEPIFNINVFDVVLIALKCVCKYCGALLMDTNDP 121
Query: 111 SSSSGLAQ-------RLLSPCC-------QEPNAAQVSIREVKTGDGACY---LVLKVSK 153
S +A R+++ C ++ + R+ + G A L +KV++
Sbjct: 122 SEMKKIAHLQGLNRLRMVAKLCGSVCKRSKDIQGCEGKGRQPRIGRFAGIYPGLQIKVTQ 181
Query: 154 SKMQDGFWRFLDKYGYRYEVDHTRALLPCEVMEMIKRFPLETKKKLAGKGYFPQDGYVIK 213
+ QD W + V + AL +M RF P+D ++
Sbjct: 182 EE-QDYVWHAENARQVLDRVSDSDAL----IMGFDPRF------------CHPRD-LILT 223
Query: 214 YLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEVIRSSRSGEPNFESHQVEANDL 273
LP+PP + + + R +++ + SG + A
Sbjct: 224 VLPIPPPQVRPAVAFGPAKSDDELTHQ-IMSIVKRNIQLRKDKESGV-KAAVDRSRALLQ 281
Query: 274 QSVVDQYLQIRGCAKPARDIETHFGVNKELSDASN--KAWLDKMKSLFISKGSGFSSRSV 331
+ V + KPA+ G K+L + K +++ + K FS+R+V
Sbjct: 282 EHVATFFNNASTYYKPAK-----VGDTKKLKSLTERLKGKYGRLRGNLMGKRVDFSARTV 336
Query: 332 ITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLVDE------NLCLAYKEGVST 385
ITGD ++EVG+P +A +TF ERVN N L + V N + V+
Sbjct: 337 ITGDPNIDVDEVGVPFSVAMTLTFPERVNVINKKRLTEFVQRTTYPSANYIIRPNGNVTK 396
Query: 386 YSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALVVYIHDDHTVKINPL 445
+L + + +L G +V R ++DGD+V NR PT H+ S+ V + + +T ++N
Sbjct: 397 LALVK-DRNAVHLDVGDVVERHVIDGDVVLFNRQPTLHRMSMMGHRVRVLNYNTFRLNLS 455
Query: 446 ICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXX 505
P ADFDGD ++L PQSL KAE++E+ V K +S +
Sbjct: 456 CTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSYR 515
Query: 506 XV-KKGFMDRAAANQMAMFLSL-PLPQPALLKAGSGDCYWTSTQILQCALP--------- 554
K F+D+ +A++L L LP PA+LK WT QI LP
Sbjct: 516 LTDKDTFVDKYFIQSVALWLDLWELPIPAILKPRP---LWTGKQIFSLILPEVNHPASPY 572
Query: 555 --LSFDCTGGRYLIRESDILGFDLGRDVLPAVINEIAASVFFGKGPQEALNFFDVLQPFL 612
F + +I+ +L + + V+ A + +F +G E F + +Q
Sbjct: 573 DKPPFPHNDKKIMIQRGQLLVGAITKGVVGAAPGSLIHVIFNERGSDEVAKFINGVQRIT 632
Query: 613 MECIFSNGFSVGLHDFSISGA--------VKRITDRNIGKVSPLLYQLRFI--------- 655
+ FSVG+ D +++ A V T +++ K+ +
Sbjct: 633 TYFNYCFAFSVGVQD-TVADATTLKEMNNVLHKTRQSVEKIGAAANNGKLTRKAGMSLLQ 691
Query: 656 -YNELVAQQLEKHMQDIELPAIKFASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVR 714
+ V L K ++ A+ +++ MI++ SK + + Q F+GQQ V
Sbjct: 692 SFEADVNSALNKCREEAAKKALSNVRRTNSFKVMIEAGSKGSDLNICQIAVFVGQQ-NVA 750
Query: 715 GRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMV 774
G G HF L D Y G+ + GL P E H+++ RE ++
Sbjct: 751 GSRIPFGFRRRTLPHFML------DDYGETSRGMATRGYVEGLQPHEFYFHTMAGREGLI 804
Query: 775 RSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGLKAGDNA 826
++ S+ G L + L+ L DV YDGTVRN + +IQ YG D A
Sbjct: 805 DTAVKTSDTGYLQRKLVKALEDVHASYDGTVRN-ANQELIQLAYGEDGLDGA 855
>K5XJ33_AGABU (tr|K5XJ33) DNA-directed RNA polymerase OS=Agaricus bisporus var.
burnettii (strain JB137-S8 / ATCC MYA-4627 / FGSC 10392)
GN=AGABI1DRAFT_65857 PE=3 SV=1
Length = 1785
Score = 182 bits (462), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 149/561 (26%), Positives = 247/561 (44%), Gaps = 68/561 (12%)
Query: 314 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLVDE 373
+++ + K FS+R+VITGD ++EVG+P IA +TF ERV +N+ YLQ+LV
Sbjct: 341 RLRGNLMGKRVDFSARTVITGDPNLELDEVGVPKSIAMNLTFPERVTPYNITYLQELV-- 398
Query: 374 NLCLAYKEGVSTYS--------------LREGSKGHTYLKPGQIVHRRIMDGDIVFINRP 419
+ G +TY LR + +L+ G IV R + DGD V NR
Sbjct: 399 ------RNGPTTYPGARYVVRDTGERIDLRYNKRADAFLQYGWIVERHLKDGDFVLFNRQ 452
Query: 420 PTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSV 479
P+ HK S+ + V + T ++N + P ADFDGD +++ PQS +AE+ ++ V
Sbjct: 453 PSLHKMSMMSHRVRLMPYSTFRLNLSVTPPYNADFDGDEMNMHVPQSEETRAELSQVAWV 512
Query: 480 EKQLLSSHXXXXXXXXXXXXX-XXXXXXVKKGFMDRAAANQMAMFLS---LPLPQPALLK 535
+Q++S ++ F+D + +++ +P PA+LK
Sbjct: 513 PRQIISPQANKPVMGIVQDTLCGVRKFTLRDCFLDWNHVQNILLWVPDWDGTIPTPAILK 572
Query: 536 AGSGDCYWTSTQILQCALPLSFDCTGGR------------YLIRESDILGFDLGRDVLPA 583
WT QIL +P + LI +++ + + + A
Sbjct: 573 PKP---LWTGKQILSMTIPRGINIHRSPDPKSSNPVFDDGMLIENGELIFGIVDKKTVGA 629
Query: 584 VINEIAASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHDF-----SISGAVKRIT 638
+ VF KGP+ F LQ + +F NGFS+G+ D ++S + I
Sbjct: 630 TQGGLVHVVFREKGPEVTRQLFTGLQRVVNFWLFHNGFSIGIGDTIADMKTMSYITQTII 689
Query: 639 DRNIGKVSPLL-------------YQLRFIYNELVAQQLEKHMQDIELPAIKFASKSSRL 685
+R +V+ ++ +R + +V +QL A K + + +
Sbjct: 690 ERK-AEVTKIIEDATHDRLKPKPGMTIRESFESMVERQLNLARDTSGQYAQKHLKEDNNV 748
Query: 686 GDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAE 745
M+ + SK + ++Q +GQQ V GR G HF D +
Sbjct: 749 KQMVVAGSKGSFINISQMSVCVGQQ-SVEGRRIPFGFRHRTLPHFT------KDDFTPES 801
Query: 746 YGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTV 805
G ++ + GL P E H+++ RE ++ ++ +E G + + L+ L DV+VCYDGTV
Sbjct: 802 RGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMVCYDGTV 861
Query: 806 RNVCSNSIIQFEYGLKAGDNA 826
RN + +IQF YG D A
Sbjct: 862 RNSLGD-LIQFVYGEDGMDGA 881
Score = 60.1 bits (144), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 56 RCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKMK 105
+C++CG + +C GHFG+IEL P++HP + ++KK+L +C+NC K+K
Sbjct: 68 KCQTCGEGMS-ECPGHFGHIELARPVFHPGFIVKVKKILECICVNCGKLK 116
>H2Z9D9_CIOSA (tr|H2Z9D9) DNA-directed RNA polymerase (Fragment) OS=Ciona
savignyi PE=3 SV=1
Length = 1852
Score = 182 bits (461), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 201/844 (23%), Positives = 348/844 (41%), Gaps = 102/844 (12%)
Query: 45 NPFLGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKM 104
+P G+ RC++C S C GHFG+IEL P++H +++ K+L VC C ++
Sbjct: 57 DPRQGVVDRMSRCQTCA-SNMTDCPGHFGHIELARPVFHVGFLTKTIKILRCVCYYCSRL 115
Query: 105 KKTKFPSSSSGLAQRLLSPCCQEPNAAQVSIREVKTGDGACYLVL----------KVSKS 154
K + +++++ +P + E++ GDG +L L K+ ++
Sbjct: 116 LVEK----GNPKIRQIMAKSKGQPRKRLAHVYELRGGDGQ-HLRLGHGGCGRYQPKIRRN 170
Query: 155 KMQ-DGFWRFLDKYGYRYEVDHTRALLPCE-VMEMIKRFPLETKKKLAGKGYFPQDGYVI 212
M+ W+ +++ + + ++ E V E+ KR E L F + ++I
Sbjct: 171 GMELVAEWKHVNE-----DSQEKKIVVSAERVHEIFKRISDEESDILGMDPRFARPEWMI 225
Query: 213 K-YLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEVIRSSRSGEPNFESHQVEAN 271
+PVPP C+ KL ++ + + E N + +
Sbjct: 226 NTVIPVPPLCVRPSVTMGGTSARSQDD---LTHKLADIIKANQQLKRNEQNGTASHIILE 282
Query: 272 DLQSVVDQYLQIRGCAKPARDIETHFGVNKELSDASN---------KAWLDKMKSLFISK 322
D++ + QY C D+ GV K L + KA +++ + K
Sbjct: 283 DVKLL--QYHVATLCDN---DMP---GVPKALQKSGRPLKSIKQRLKAKEGRIRGNLMGK 334
Query: 323 GSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLVDEN------LC 376
FS+R+VIT D +I+EVG+P IA +T+ E V N+ +Q+LV
Sbjct: 335 RVDFSARTVITPDPNLKIDEVGVPRSIACNLTYPEIVTPFNIDRMQELVRRGNNQYPGAK 394
Query: 377 LAYKEGVSTYSLREGSK-GHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALVVYIH 435
++G LR K +L+ G V R I DGD++ NR PT HK S+ V +
Sbjct: 395 YIIRDGGDRIDLRYHPKPSDLHLQVGYKVERHIKDGDVIVFNRQPTLHKMSMMGHKVRVL 454
Query: 436 DDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHXXXXXXXX 495
T ++N + P ADFDGD +++ PQ++ +AE+++L V + +++
Sbjct: 455 PWSTFRMNLSVTTPYNADFDGDEMNMHVPQTMETRAEILQLAMVNRMIITPQSNRPVMGI 514
Query: 496 XXXXXXXXXXXVKK-GFMDRAAANQMAMFLS---LPLPQPALLKAGSGDCYWTSTQILQC 551
K+ F+++A + M+L LPQPA+LK WT QI
Sbjct: 515 VQDTLTAVRKMTKRDSFIEKADFMNLLMYLGDWDGYLPQPAILKPKP---LWTGKQIFSL 571
Query: 552 ALPLSFDC------------TG---------GRYLIRESDILGFDLGRDVLPAVINEIAA 590
+P +C TG R L+ +L + + L +
Sbjct: 572 IIPPGINCIRNHSTHPDGEDTGPYKHISPGDTRVLVENGILLSGIICKKSLGTSAGSLCH 631
Query: 591 SVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHDFSISGAVKRITDRNIGKVSPLLY 650
V K F+ +Q + + G S+G+ D + I K +
Sbjct: 632 VVALEKSADVCREFYSNIQTVVNNWLMIEGHSIGIGDTIADAQTYQDIQNQIRKAKQEVI 691
Query: 651 QLRF---IYN--------ELVAQQLEKHMQDIELPAIKFASKS----SRLGDMIDSKSKS 695
+ + IYN + Q+ + + D A KS + M+ + SK
Sbjct: 692 ERKLTKKIYNPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSDFNNFKAMVVAGSKG 751
Query: 696 ALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGCFFH 755
+ ++Q I +GQQ V G+ G HF +K DY P A G ++ +
Sbjct: 752 SKINISQVIAVVGQQ-NVEGKRIPFGFRHRTLPHF-IKDDYG----PEAR-GFVENSYLA 804
Query: 756 GLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQ 815
GL P E H++ RE ++ ++ +E G + + L+ + V+V YDGT+R C++ +IQ
Sbjct: 805 GLTPTEFYFHAMGGREGLIDTAVKTAETGYIQRRLVKAMEAVMVRYDGTIRQ-CNDYMIQ 863
Query: 816 FEYG 819
YG
Sbjct: 864 LCYG 867
>A4RTE2_OSTLU (tr|A4RTE2) DNA-directed RNA polymerase OS=Ostreococcus lucimarinus
(strain CCE9901) GN=OSTLU_24022 PE=3 SV=1
Length = 1395
Score = 182 bits (461), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 220/860 (25%), Positives = 354/860 (41%), Gaps = 127/860 (14%)
Query: 55 GRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLK----------- 103
G C +C + C GHFGYI+L +P++H + + +L VC NC +
Sbjct: 86 GECATCRGNMV-DCAGHFGYIKLELPVFHIGYFKNIISVLQCVCKNCSRILLNEDDQDMF 144
Query: 104 MKKTKFP----SSSSGLAQRLLSPC--CQE-PNAAQVSIREVKTGDGACYLVLKVSKS-K 155
+K+ + P + L ++L C C+ P+ + + G + K SK+
Sbjct: 145 LKRYRNPRLEITQRRLLYKKLTEKCKRCRTCPHCGDYNGVTKRAGQTLKIVHEKYSKNPA 204
Query: 156 MQDGFWRFLD---KYGYRYEVDHTRA---LLPCEVMEMIKRFPLETKKKLAGKGYFPQDG 209
+ + F + + KY + + L P V+ +++R +L P+
Sbjct: 205 LLEEFMKEFETALKYNEQLRASLPKVQDDLNPIRVLGILQRVT-SADCELLDIADRPEH- 262
Query: 210 YVIKYLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEVIRSSRSG-EPNFESHQV 268
++ +LPVPP C+ KL++ +EV R G E + +
Sbjct: 263 LLLTHLPVPPCCIRPSVEMDGVSGSNEDDITM---KLIQIIEVNNVLRQGLEKGLAVNNM 319
Query: 269 EAN--DLQSVVDQY---------LQIRGCAKPARDIETHFGVNKELSDASNKAWLDKMKS 317
N LQ Y LQ +G KP R G + L K + +
Sbjct: 320 MENWDFLQIQCAMYINSELPGLSLQYQGPGKPLR------GFVQRL-----KGKQGRFRG 368
Query: 318 LFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLVDENLC- 376
K FS+R+VI+ D RI+EVG+P IA+ +T+ E VN HNM L++ V +
Sbjct: 369 NLSGKRVDFSARTVISPDPNLRIDEVGVPIHIAKTMTYPEVVNKHNMVMLRERVRNGMAK 428
Query: 377 ------LAYKEGVSTYSLREGS--KGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQ 428
+ + G Y L+ G K + LK G IV R + DGDI+ NR P+ HK S+
Sbjct: 429 HPGANFVKFASGGMQY-LKYGDRRKIASELKFGDIVERHLHDGDILLFNRQPSLHKMSIM 487
Query: 429 ALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLS-SH 487
A I + T++ N +C P ADFDGD +++ PQ+ A+AE ++L V+ L + +
Sbjct: 488 AHKARIMECRTLRFNECVCTPYNADFDGDEMNIHCPQTEEARAEAMQLMGVQHNLCTPKN 547
Query: 488 XXXXXXXXXXXXXXXXXXXVKKGFMDRAAANQMAMF-----LSLPLPQPALLKAGSGDCY 542
+K F DR+ + + LS+ LP PA+LK
Sbjct: 548 GEILIAATQDFLTAAFLLTIKDAFFDRSQFGSLVAYMGDALLSVDLPTPAILKPIE---L 604
Query: 543 WTSTQILQCAL-PLSFD--------------------CTGGRYL-IRESDILGFDLGRDV 580
WT Q+ + P + D C Y+ I+ S+I+ LG+
Sbjct: 605 WTGKQVFSVLIRPKASDHIYVNLEVAEKLYNKKDKTMCPDDGYVCIQNSEIISGQLGKAT 664
Query: 581 LPAVINEIAASVF-FGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHDFSISGAVK---- 635
L + V G + A N + L + + GFS+G+ D S + +
Sbjct: 665 LGSGNKSGLFYVLNIEYGAEAAANAMNRLAKLSARWLGTRGFSIGIDDVSPAAELSAEKG 724
Query: 636 -------RITDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQDIELPAIKFASKSSRLGD- 687
R D I L+ N + LE + + L A++ A+ ++ L
Sbjct: 725 RRIEDGYRTCDERIASYEKGTLPLQAGCN--AEETLEAEVLGV-LSAVREAAGNACLKAL 781
Query: 688 --------MIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGD 739
M SK + ++Q I +GQQ V G G E HF+ G+
Sbjct: 782 PRRNAPLIMALCGSKGSTINISQMIACVGQQA-VGGSRPPDGFAERSLPHFR-----RGE 835
Query: 740 GYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVV 799
P+A+ G + FF G+ P E H+++ RE +V ++ +E G + + LM L D+ +
Sbjct: 836 KTPAAK-GFVANSFFSGMRPTEFFFHTMAGREGLVDTAVKTAETGYMSRRLMKALEDLSL 894
Query: 800 CYDGTVRNVCSNSIIQFEYG 819
YDGTVRN I+Q YG
Sbjct: 895 QYDGTVRN-SMGGIVQLRYG 913
>A7J5B1_9LECA (tr|A7J5B1) DNA-directed RNA polymerase (Fragment) OS=Teloschistes
exilis GN=RPB1 PE=3 SV=1
Length = 1003
Score = 181 bits (460), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 150/594 (25%), Positives = 261/594 (43%), Gaps = 53/594 (8%)
Query: 314 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLV-- 371
+++ + K FS+R+VITGD ++EVG+P IA+ +T+ E V +N+ L +LV
Sbjct: 259 RLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIAKTLTYPETVTPYNIQKLHQLVKN 318
Query: 372 --DENLCLAY--KEGVSTYSLREGSK-GHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHS 426
+E+ Y ++ LR + G L+ G V R I+DGD + NR P+ HK S
Sbjct: 319 GPNEHPGAKYVIRDSGERIDLRHHKRAGEISLQYGWKVERHIVDGDFIIFNRQPSXHKES 378
Query: 427 LQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSS 486
+ V + T ++N + P ADFDGD ++L PQS +AEV +L V ++S
Sbjct: 379 MMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVNQLCMVPLNIVSP 438
Query: 487 HXXXXXXXXXXXXXXXXXXXVKKG-FMDRAAANQMAMFLSLP-----LPQPALLKAGSGD 540
++ F+++ M + L +P +PQPA+LK
Sbjct: 439 QRNSPLMGIVQDTLCGIYKICRRDVFLNQEQV--MNILLWVPEWDGIIPQPAVLKPTP-- 494
Query: 541 CYWTSTQILQCALPLSFDCTGGR---------YLIRESDILGFDLGRDVLPAVINEIAAS 591
WT QI+ +P + G + +++ L + V+ A + I
Sbjct: 495 -LWTGKQIVSLVIPAGLNLVKGSDYAPLKDDGIFVSSGELMFGLLNKKVVGAAMGGIIHI 553
Query: 592 VFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHDFSISGAVKRITD-------RNIGK 644
V+ KGP+ A+NFF+ Q + + NGFS+G+ D R+ + R + +
Sbjct: 554 VYNEKGPEAAMNFFNGAQAVVNYWLLHNGFSIGIGDTIPDRETIRLIEEAVNAQKREVAE 613
Query: 645 VSPLLYQLRF----------IYNELVAQQLEKHMQDIELPAIKFASKSSRLGDMIDSKSK 694
++ + + R + V++ L K D + M S SK
Sbjct: 614 ITQMATESRLDTLPGMNVRETFESRVSKALNKARDDAGTVTEDSLKDLNNATQMARSGSK 673
Query: 695 SALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGCFF 754
+ ++Q +GQQ V G+ G HF D Y G ++ +
Sbjct: 674 GSTINISQMTAVVGQQ-SVEGKRIPFGFKYRTLPHFT------KDDYSPESRGFVENSYL 726
Query: 755 HGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSII 814
GL P E H+++ RE ++ ++ +E G + + L+ L DV+ YDGT+RN + I+
Sbjct: 727 RGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMAKYDGTIRNSLGD-IV 785
Query: 815 QFEYGLKAGDNASYLFPAGEHVGVLAATAMSNPAYKAVLDASPSSNCSWELMKE 868
QF YG + G + +++ P + V + ++D +P + S E +++
Sbjct: 786 QFVYG-EDGLDGAHIEPQRLDIIVCSDAKFEKDFRIDLMDDNPRTTVSAEFLEQ 838
>M4AMP3_XIPMA (tr|M4AMP3) DNA-directed RNA polymerase OS=Xiphophorus maculatus
GN=POLR2A PE=3 SV=1
Length = 1836
Score = 181 bits (460), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 210/881 (23%), Positives = 350/881 (39%), Gaps = 133/881 (15%)
Query: 45 NPFLGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKM 104
+P G+ GRC++C +C GHFG+IEL P++H +S++ K+L VC C K+
Sbjct: 57 DPRQGVIERSGRCQTCA-GNMTECPGHFGHIELAKPVFHVGFISKIMKILRCVCFFCSKL 115
Query: 105 -------KKTKFPSSSSGLAQRLLSPC---------CQ-----------EPNAAQVSIRE 137
K + S G ++ L+ C+ EP + I +
Sbjct: 116 LVDSNNPKIKEILGKSKGQPRKRLTHVYELCKGKNICEGGEEMDNKFGMEPQETEEDITK 175
Query: 138 VKTGDGACYLVLKVSKSKMQ-DGFWRFLDKYGYRYEVDHTRALLPCEVMEMIKRFPLETK 196
K G ++ +S ++ W+ +++ ++ L P V E+ KR E
Sbjct: 176 EKGHGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKI----LLSPERVHEIFKRISDEED 231
Query: 197 KKLAGKGYFPQDGY-VIKYLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEVIRS 255
L F + + ++ LPVPP + KL V++
Sbjct: 232 IILGMDPKFARPEWMIVTVLPVPPLAVRPAVVMQGSARNQDD----LTHKLADIVKINNQ 287
Query: 256 SRSGEPNFESHQVEANDLQ-------SVVDQYLQ--IRGCAKPARDIETHFGVNKELSDA 306
R E + + V A D++ ++VD L R K R +++ + + L
Sbjct: 288 LRRNEQSGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKS---IKQRL--- 341
Query: 307 SNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCY 366
K +++ + K FS+R+VIT D +I++VG+P IA +TF E V N+
Sbjct: 342 --KGKEGRVRGNLMGKRVDFSARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDR 399
Query: 367 LQKLVDENLCLAYKEGVSTYS--------------LREGSK-GHTYLKPGQIVHRRIMDG 411
LQ+LV + G S Y LR K +L+ G V R + DG
Sbjct: 400 LQELV--------RRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQIGYKVERHMCDG 451
Query: 412 DIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKA 471
DI+ NR PT HK S+ V I T ++N + P ADFDGD ++L PQSL +A
Sbjct: 452 DIIIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRA 511
Query: 472 EVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKKG-FMDRAAANQMAMFLSL---P 527
E+ EL V + +++ K+ F++R + MFLS
Sbjct: 512 EIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGK 571
Query: 528 LPQPALLKAGSGDCYWTSTQILQCALPLSFDCT---------------------GGRYLI 566
+PQPA+LK WT QI +P + + ++
Sbjct: 572 MPQPAILKPRP---LWTGKQIFSLIIPGHINVIRTHSTHPDDEDSGPFKHISPGDTKVIV 628
Query: 567 RESDILGFDLGRDVLPAVINEIAASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLH 626
+++ L + L + + G F+ +Q + + G S+G+
Sbjct: 629 ENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVVNNWLLIEGHSIGIG 688
Query: 627 D--------FSISGAVKR--------ITDRNIGKVSPLL-YQLRFIYNELVAQQLEKHMQ 669
D I +K+ I + ++ P LR + V + L
Sbjct: 689 DSIADAKTYLDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARD 748
Query: 670 DIELPAIKFASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASH 729
A K S+ + M+ + SK + ++Q I +GQQ V G+ G H
Sbjct: 749 KTGSSAQKSLSEYNNFKSMVVAGSKGSKINISQVIAVVGQQ-NVEGKRIPFGFKHRTLPH 807
Query: 730 FKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKN 789
F +K DY + G ++ + GL P E H++ RE ++ ++ +E G + +
Sbjct: 808 F-IKDDYGPES-----RGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRR 861
Query: 790 LMAILRDVVVCYDGTVRNVCSNSIIQFEYGLK--AGDNASY 828
L+ + V+V YD TVRN N ++Q YG AG+N +
Sbjct: 862 LIKSMESVMVKYDATVRNSI-NQVVQLRYGEDGLAGENVEF 901
>M0VV72_HORVD (tr|M0VV72) DNA-directed RNA polymerase OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 854
Score = 181 bits (460), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 208/747 (27%), Positives = 315/747 (42%), Gaps = 91/747 (12%)
Query: 304 SDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHN 363
+D WL K +SK S + R + GD R++E+GIP ++A + E VNS+N
Sbjct: 131 TDTHGMKWL---KDAILSKRSDNAFRGTMVGDPKIRLHEIGIPVDLASNLVVSEHVNSYN 187
Query: 364 M------CYLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFIN 417
C L +E L K T +R+ ++ L G VHR + DGD++ IN
Sbjct: 188 FDSINSKCNHYLLANE--VLVIKRSGKTILVRKPNQ----LVIGDTVHRLLQDGDLILIN 241
Query: 418 RPPTTHKHSLQALVVYIHDDHTV-KINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVEL 476
RPP+ H+HSL L + +V INPL C PL DFDGDC+H + PQS+ ++ E+ EL
Sbjct: 242 RPPSVHQHSLIGLSAKLLPIQSVLSINPLCCAPLAGDFDGDCLHGYVPQSIQSRVELGEL 301
Query: 477 FSVEKQLLSSHXXXXXXXXXXXXXXXXXXXV-KKGFMDRAAANQMAMFLS--LPLPQPAL 533
S+ QLL++ + + + Q M L P P PA+
Sbjct: 302 VSLSHQLLNAQDGRSLVSLTHDSLAAAYLLTSSEVLLKKTEIQQFQMLLHPLSPTPGPAI 361
Query: 534 LKA-GSGDCYWTSTQILQCALP--LSFDCTGGRYLIRESDILGFDLGRDVLPAVINEIAA 590
+K+ S WT Q+ LP +SF ++I + ++L L I+ + +
Sbjct: 362 MKSIHSHGPLWTGKQLFSMLLPSDMSFSIESKVHII-DGEVLACPSESFWLQNSISGLFS 420
Query: 591 SVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHD---FSISGAVKRITD-RNIG--- 643
+F G AL Q L E + G SV L D F + +++ D N+
Sbjct: 421 FMFKQYG-DTALELLSSAQDVLCEFLTMRGLSVSLSDIYLFPDHDSRRKLADGVNLALDD 479
Query: 644 ----------KVSPLLYQLRFIYNELVAQQLEKHMQDI---ELPAIK-----FASKSSRL 685
+SP + Y++ D LP IK F S S L
Sbjct: 480 AEEAFRIKQILLSPDSIPILKCYDDCADLSQSYEQSDFIQSNLPIIKSSIMAFKSVFSDL 539
Query: 686 GDMI--------------DSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFK 731
M+ ++ SK ++ K QQ +G QL + AS +
Sbjct: 540 QKMVQQHTARNNSMMIMTNAGSKGSMLKFVQQTACVGLQLPASRFPFRIPSELSCASWNR 599
Query: 732 LKCDYDGDGYPSAE-YGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNL 790
K + G+ Y +++ F GL+P E L+HSIS R S PGTL + L
Sbjct: 600 HKSEGRGECLGGQNLYAVIRNSFAGGLNPLECLLHSISGRANFF--SENADVPGTLTRKL 657
Query: 791 MAILRDVVVCYDGTVRNVCSNSIIQFEYGLKAGDNASYLFPAGE---HVGVLAATAMSNP 847
M LRD+ V YDGTVR+ I+QF Y A D S GE VG AA ++S
Sbjct: 658 MYHLRDLYVAYDGTVRSSYGQQIMQFTYD-TAEDMCSDRNLEGELGAPVGSWAACSISEA 716
Query: 848 AYKAV------LDASPSSNCSWELMKEILLCKVHFRNEPIDRRVILYLNDCDCGRSYCRE 901
AY A+ L+ SP N ++++L C+ +D +L+L+ Y E
Sbjct: 717 AYGALDHPVNSLEESPLMN-----LQDVLKCQK--GGTSMDHVGLLFLSKNLKKYRYGLE 769
Query: 902 NAAYAVKNQLRKVSLKDTAVDFIVEYQQQRKRKGSEIDAGLVGHIHLDEVKLEELKINMA 961
A+ VK+ L V+ D +V + + KGS H HL + + ++ +
Sbjct: 770 YASLEVKDYLEPVNFSDLVDTVMVLHGGCQSTKGSP----WTTHFHLSQEMMTRKRLGLR 825
Query: 962 EVFQRCQEKLDSFNRKR-KFNQIFKRT 987
V + E+ +N KR K N + +
Sbjct: 826 LVVEELTEQ---YNAKRDKLNDVIPKV 849
>M0VV73_HORVD (tr|M0VV73) DNA-directed RNA polymerase OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 858
Score = 181 bits (460), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 208/747 (27%), Positives = 315/747 (42%), Gaps = 91/747 (12%)
Query: 304 SDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHN 363
+D WL K +SK S + R + GD R++E+GIP ++A + E VNS+N
Sbjct: 135 TDTHGMKWL---KDAILSKRSDNAFRGTMVGDPKIRLHEIGIPVDLASNLVVSEHVNSYN 191
Query: 364 M------CYLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFIN 417
C L +E L K T +R+ ++ L G VHR + DGD++ IN
Sbjct: 192 FDSINSKCNHYLLANE--VLVIKRSGKTILVRKPNQ----LVIGDTVHRLLQDGDLILIN 245
Query: 418 RPPTTHKHSLQALVVYIHDDHTV-KINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVEL 476
RPP+ H+HSL L + +V INPL C PL DFDGDC+H + PQS+ ++ E+ EL
Sbjct: 246 RPPSVHQHSLIGLSAKLLPIQSVLSINPLCCAPLAGDFDGDCLHGYVPQSIQSRVELGEL 305
Query: 477 FSVEKQLLSSHXXXXXXXXXXXXXXXXXXXV-KKGFMDRAAANQMAMFLSL--PLPQPAL 533
S+ QLL++ + + + Q M L P P PA+
Sbjct: 306 VSLSHQLLNAQDGRSLVSLTHDSLAAAYLLTSSEVLLKKTEIQQFQMLLHPLSPTPGPAI 365
Query: 534 LKA-GSGDCYWTSTQILQCALP--LSFDCTGGRYLIRESDILGFDLGRDVLPAVINEIAA 590
+K+ S WT Q+ LP +SF ++I + ++L L I+ + +
Sbjct: 366 MKSIHSHGPLWTGKQLFSMLLPSDMSFSIESKVHII-DGEVLACPSESFWLQNSISGLFS 424
Query: 591 SVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHD---FSISGAVKRITD-RNIG--- 643
+F G AL Q L E + G SV L D F + +++ D N+
Sbjct: 425 FMFKQYG-DTALELLSSAQDVLCEFLTMRGLSVSLSDIYLFPDHDSRRKLADGVNLALDD 483
Query: 644 ----------KVSPLLYQLRFIYNELVAQQLEKHMQDI---ELPAIK-----FASKSSRL 685
+SP + Y++ D LP IK F S S L
Sbjct: 484 AEEAFRIKQILLSPDSIPILKCYDDCADLSQSYEQSDFIQSNLPIIKSSIMAFKSVFSDL 543
Query: 686 GDMI--------------DSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFK 731
M+ ++ SK ++ K QQ +G QL + AS +
Sbjct: 544 QKMVQQHTARNNSMMIMTNAGSKGSMLKFVQQTACVGLQLPASRFPFRIPSELSCASWNR 603
Query: 732 LKCDYDGDGYPSAE-YGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNL 790
K + G+ Y +++ F GL+P E L+HSIS R S PGTL + L
Sbjct: 604 HKSEGRGECLGGQNLYAVIRNSFAGGLNPLECLLHSISGRANFF--SENADVPGTLTRKL 661
Query: 791 MAILRDVVVCYDGTVRNVCSNSIIQFEYGLKAGDNASYLFPAGE---HVGVLAATAMSNP 847
M LRD+ V YDGTVR+ I+QF Y A D S GE VG AA ++S
Sbjct: 662 MYHLRDLYVAYDGTVRSSYGQQIMQFTYD-TAEDMCSDRNLEGELGAPVGSWAACSISEA 720
Query: 848 AYKAV------LDASPSSNCSWELMKEILLCKVHFRNEPIDRRVILYLNDCDCGRSYCRE 901
AY A+ L+ SP N ++++L C+ +D +L+L+ Y E
Sbjct: 721 AYGALDHPVNSLEESPLMN-----LQDVLKCQK--GGTSMDHVGLLFLSKNLKKYRYGLE 773
Query: 902 NAAYAVKNQLRKVSLKDTAVDFIVEYQQQRKRKGSEIDAGLVGHIHLDEVKLEELKINMA 961
A+ VK+ L V+ D +V + + KGS H HL + + ++ +
Sbjct: 774 YASLEVKDYLEPVNFSDLVDTVMVLHGGCQSTKGSP----WTTHFHLSQEMMTRKRLGLR 829
Query: 962 EVFQRCQEKLDSFNRKR-KFNQIFKRT 987
V + E+ +N KR K N + +
Sbjct: 830 LVVEELTEQ---YNAKRDKLNDVIPKV 853
>J8Q283_SACAR (tr|J8Q283) DNA-directed RNA polymerase OS=Saccharomyces arboricola
(strain H-6 / AS 2.3317 / CBS 10644) GN=SU7_3260 PE=3
SV=1
Length = 1460
Score = 181 bits (460), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 245/1055 (23%), Positives = 422/1055 (40%), Gaps = 164/1055 (15%)
Query: 45 NPFLGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKM 104
+P +G+ C +C + A C GHFG+++L +P++H + ++L +C NC +
Sbjct: 55 DPKMGVSSSSLECTTCHGNLAS-CHGHFGHLKLALPVFHIGYFKATIQILQGICKNCSSI 113
Query: 105 -----KKTKF------PSSSS----GLAQRLLSPC-----CQEPNAAQVSIREVKTGDGA 144
K +F P + G+ +++L C C A ++ K GA
Sbjct: 114 LLSETDKRQFLHELRRPGVDNLRRMGILKKILDQCKKQRRCLHCGALNGVVK--KAAAGA 171
Query: 145 CYLVLKV---------SKSKMQDGFW--RFLDKYGYRYEVDH-----TRALLPCEVMEMI 188
LK+ KS + W + + G+ E++ L P + + +
Sbjct: 172 GSAALKIIHDTFRWVGKKSAPEKDIWVGEWKEVLGHNPELERYVKRCMDDLNPLKTLNLF 231
Query: 189 KRFPLETKKKLAGKGYFPQ---DGYVIKYLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRK 245
K+ + L P + Y+ +YLP PP C+ L +
Sbjct: 232 KQVKSADCELLGIDTTVPSGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTVKLTE 291
Query: 246 LLRKVEVIRSSRSGEPNFESHQVEANDLQSVVDQYLQ--------IRGCAKPARDIETHF 297
++ +I++ + + + LQ V Y+ + G + ++
Sbjct: 292 IVWTSSLIKAGLEKGISINNMMEHWDYLQLTVAMYINSDSVNPAMLPGSSNGGGKVKPIR 351
Query: 298 GVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEE 357
G + L K + + K FS R+VI+ D I+EV +P +A+ +T+ E
Sbjct: 352 GFCQRL-----KGKQGRFRGNLSGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTYPE 406
Query: 358 RVNSHNMCYLQKLV--------DENLCLAYKEGVSTYSLREGS--KGHTYLKPGQIVHRR 407
+V +N LQ+LV N L E + +LR G K L+ G +V R
Sbjct: 407 KVTRYNRHKLQELVVNGPNVHPGANYLLKKNED-ARRNLRYGDRMKLAKNLQIGDVVERH 465
Query: 408 IMDGDIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSL 467
+ DGD+V NR P+ H+ S+ + I T ++N +C P ADFDGD ++L PQ+
Sbjct: 466 LEDGDVVLFNRQPSLHRLSILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTE 525
Query: 468 AAKAEVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKK-GFMDRAAANQMAMFLS- 525
A+AE + L V+ LL+ K F DRA Q+ +S
Sbjct: 526 EARAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFYDRATLTQLLSMMSD 585
Query: 526 ----LPLPQPALLKAGSGDCYWTSTQILQC---------------------------ALP 554
+P PA++K WT Q+ +LP
Sbjct: 586 GVEQFDIPPPAIMKPYY---LWTGKQVFSLLIKPNHNSPVVINLDAKNKVFVPPKSKSLP 642
Query: 555 LSFDCTGGRYLIRESDILGFDLGRDVL-PAVINEIAASVFFGKGPQEALNFFDVLQPFLM 613
G +IR S+IL + + VL + + ++ GPQEA N + +
Sbjct: 643 SEMSQNDGFVIIRGSNILSGVMDKSVLGDGKKHSVFYTILRDYGPQEAANAMNRMSKLCA 702
Query: 614 ECIFSNGFSVGLHDFSISGAVKR----ITDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQ 669
+ + GFS+G++D + + +K+ + + K L+ + F EL Q Q
Sbjct: 703 RFLGNRGFSIGINDVTPADDLKQKKEELVEIAYRKCDELITE--FNRGELETQPGCNEEQ 760
Query: 670 DIELPAIKFASK-SSRLGD--------------MIDSKSKSALDKVTQQIGFLGQQLFVR 714
+E F SK +GD M SK + V+Q + +GQQ+ +
Sbjct: 761 TLEAKIGGFLSKVREEVGDVCINELDNWNAPLIMATCGSKGSTLNVSQMVAVVGQQI-IS 819
Query: 715 GRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMV 774
G G + HF P ++ G ++ FF GL P E L H+IS RE +V
Sbjct: 820 GNRVPDGFQDRSLPHFP-----KNSKTPQSK-GFVRNSFFSGLSPPEFLFHAISGREGLV 873
Query: 775 RSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGLKAGDNASYLFPAGE 834
++ +E G + + LM L D+ YD TVR +N I+QF YG GD L G
Sbjct: 874 DTAVKTAETGYMSRRLMKSLEDLSCQYDNTVR-TSANGIVQFTYG---GDGLDPLEMEGN 929
Query: 835 HVGVLAATAMSNPAYKAVLDASPSSNCSWELMK---EILLCKVHFRNEPIDRRVILYLND 891
V + + AY D + +MK E+L P++ R+I Y N
Sbjct: 930 AQPVNFNRSWDH-AYNITFDNKDEGLLPYAIMKTANEVL--------RPLEERLIRYDNS 980
Query: 892 CDCGRSYCRENAAYAVK--------NQLRK-VSLKDTAVDFIVEYQQQRKRKGSEI---D 939
++ ++ A Y + LR+ ++LK TA+ + +R R SE+
Sbjct: 981 GCLVKAEDKDKAEYVDQYDAERDFYRSLREYINLKATALANL-----RRSRGMSELLEAP 1035
Query: 940 AGLVGHIHLDEVKLEELKINMAEVFQRCQEKLDSF 974
++ ++ DE + +KI+++++++ ++ + F
Sbjct: 1036 EKILEGVNPDENVPDNIKISVSQLYRISEKSVKKF 1070
>Q4Q600_LEIMA (tr|Q4Q600) DNA-directed RNA polymerase OS=Leishmania major
GN=RPOIILS PE=3 SV=1
Length = 1662
Score = 181 bits (460), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 206/832 (24%), Positives = 338/832 (40%), Gaps = 97/832 (11%)
Query: 52 LEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNC-LKMKKTKFP 110
EY CE+CG +C GHFGY+EL PI++ + + L VC C + T P
Sbjct: 64 FEYS-CETCGLRHP-ECPGHFGYVELAEPIFNINVFDVVLIALKCVCKYCGALLMDTNDP 121
Query: 111 SSSSGLAQ-------RLLSPCC-------QEPNAAQVSIREVKTGDGACY---LVLKVSK 153
S +A R+++ C ++ + R+ + G L +KV++
Sbjct: 122 SEMKKIAHLQGLNRLRMVAKLCGSVCKRSKDIQGCEGKGRQPRIGRFVGIYPGLQIKVTQ 181
Query: 154 SKMQDGFWRFLDKYGYRYEVDHTRALLPCEVMEMIKRFPLETKKKLAGKGYFPQDGYVIK 213
+ QD W + V + AL +M +RF P+D ++
Sbjct: 182 EE-QDYVWHAENARQVLDRVSDSDAL----IMGFDRRF------------CHPRD-LILT 223
Query: 214 YLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEVIRSSRSGEPNFESHQVEANDL 273
LP+PP + + + R +++ + SG + A
Sbjct: 224 VLPIPPPQVRPAVTFGSAKSDDELTHQ-IMSIVKRNIQLRKDKESGV-KAAVDRSRALLQ 281
Query: 274 QSVVDQYLQIRGCAKPARDIETHFGVNKELSDASN--KAWLDKMKSLFISKGSGFSSRSV 331
+ V + KPA+ G K+L + K +++ + K FS+R+V
Sbjct: 282 EHVATFFNNASTYYKPAK-----VGDTKKLKSLTERLKGKYGRLRGNLMGKRVDFSARTV 336
Query: 332 ITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLVDE------NLCLAYKEGVST 385
ITGD ++EVG+P +A +TF ERVN N L + V N + V+
Sbjct: 337 ITGDPNIDVDEVGVPFSVAMTLTFPERVNVINKKRLTEFVQRTTYPSANYIIRPNGNVTK 396
Query: 386 YSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALVVYIHDDHTVKINPL 445
+L + + +L G +V R ++DGD+V NR PT H+ S+ V + + +T ++N
Sbjct: 397 LALVK-DRSAVHLDVGDVVERHVIDGDVVLFNRQPTLHRMSMMGHRVRVLNYNTFRLNLS 455
Query: 446 ICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXX 505
P ADFDGD ++L PQSL KAE++E+ V K +S +
Sbjct: 456 CTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSYR 515
Query: 506 XV-KKGFMDRAAANQMAMFLSL-PLPQPALLKAGSGDCYWTSTQILQCALP--------- 554
K F+D+ +A++L L LP PA+LK WT QI LP
Sbjct: 516 LTDKDTFVDKYFIQSVALWLDLWELPIPAILKPRP---LWTGKQIFSLILPEVNHPASPY 572
Query: 555 --LSFDCTGGRYLIRESDILGFDLGRDVLPAVINEIAASVFFGKGPQEALNFFDVLQPFL 612
F + +I+ +L + + V+ A + +F +G E F + +Q
Sbjct: 573 DKPPFPHNDKKIMIQRGQLLVGAITKGVVGAAPGSLIHVIFNERGSDEVAKFINGVQRIT 632
Query: 613 MECIFSNGFSVGLHDFSISGA--------VKRITDRNIGKVSPLLYQLRFI--------- 655
+ FSVG+ D +++ A V T +++ K+ +
Sbjct: 633 TYFNYCFAFSVGVQD-TVADATTLKEMNNVLHKTRQSVEKIGAAANNGKLTRKAGMSLLQ 691
Query: 656 -YNELVAQQLEKHMQDIELPAIKFASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVR 714
+ V L K ++ A+ +++ MI++ SK + + Q F+GQQ V
Sbjct: 692 SFEADVNSALNKCREEAAKKALSNVRRTNSFKVMIEAGSKGSDLNICQIAVFVGQQ-NVA 750
Query: 715 GRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMV 774
G G HF L D Y G+ + GL P E H+++ RE ++
Sbjct: 751 GSRIPFGFRRRTLPHFML------DDYGETSRGMATRGYVEGLQPHEFYFHTMAGREGLI 804
Query: 775 RSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGLKAGDNA 826
++ S+ G L + L+ L DV YDGTVRN + +IQ YG D A
Sbjct: 805 DTAVKTSDTGYLQRKLVKALEDVHASYDGTVRN-ANQELIQLAYGEDGLDGA 855
>R7SV30_DICSQ (tr|R7SV30) Beta and beta-prime subunits of DNA dependent
RNA-polymerase OS=Dichomitus squalens (strain LYAD-421)
GN=DICSQDRAFT_66181 PE=4 SV=1
Length = 1749
Score = 181 bits (460), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 150/555 (27%), Positives = 251/555 (45%), Gaps = 56/555 (10%)
Query: 314 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLVDE 373
+++ + K FS+R+VITGD ++EVG+P IA +TF ERV +N+ YLQ+LV
Sbjct: 344 RLRGNLMGKRVDFSARTVITGDPNLELDEVGVPRSIAMNLTFPERVTPYNIAYLQELVRN 403
Query: 374 NLCL------AYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSL 427
+ ++ LR + +L+ G IV R + DGD V NR P+ HK S+
Sbjct: 404 GPTVYPGARYVVRDTGERIDLRYNKRADAFLQYGWIVERHLKDGDFVLFNRQPSLHKMSM 463
Query: 428 QALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSH 487
+ V + T ++N + P ADFDGD +++ PQS +AE+ ++ V +Q++S
Sbjct: 464 MSHRVRLMPYSTFRLNLSVTPPYNADFDGDEMNMHVPQSEETRAELSQIAWVPRQIISPQ 523
Query: 488 XXXXXXXXXXXXX-XXXXXXVKKGFMDRAAANQMA-MFLSLP-----LPQPALLKAGSGD 540
++ F+D NQ+ + L +P +P PA++K
Sbjct: 524 ANKPVMGIVQDTLCGIRKFTLRDTFLD---WNQVQNILLWVPDWDGTVPTPAIIKPKP-- 578
Query: 541 CYWTSTQILQCALPLSFDCTGGR------------YLIRESDILGFDLGRDVLPAVINEI 588
WT Q+L +P + +I DI+ + + + A +
Sbjct: 579 -MWTGKQLLSMCIPRGINIFRAPDPKSNNPVFDDGMMIENGDIVFGVVEKKTVGASQGGL 637
Query: 589 AASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHDF-----SISGAVKRITDR--N 641
VF KGP+ F LQ + +F NGFS+G+ D ++ K+I +R N
Sbjct: 638 VHVVFREKGPEATRTLFTGLQQVVNYWLFHNGFSIGIGDTIADRGTMDYIQKQIAERKQN 697
Query: 642 IGKVSPLLY--QLRFIYNELVAQQLEKHMQ-DIELP-------AIKFASKSSRLGDMIDS 691
+ ++ Y +LR + + EK ++ ++ L A K + + + M+ +
Sbjct: 698 VLQIMDDAYHDRLRPSPGMTIRESFEKKVERELNLARDHSGQYAQKHLKEDNNVKQMVVA 757
Query: 692 KSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKG 751
SK + ++Q +GQQ V G+ G HF D + G ++
Sbjct: 758 GSKGSFINISQMSVCVGQQ-SVEGKRIPFGFRHRTLPHFT------KDDFSPEARGFVEN 810
Query: 752 CFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSN 811
+ GL P E H+++ RE ++ ++ +E G + + L+ L DV VCYDGTVRN +
Sbjct: 811 SYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVQVCYDGTVRNSLGD 870
Query: 812 SIIQFEYGLKAGDNA 826
+IQF YG D A
Sbjct: 871 -LIQFIYGEDGMDGA 884
>A8Q5I6_MALGO (tr|A8Q5I6) DNA-directed RNA polymerase OS=Malassezia globosa
(strain ATCC MYA-4612 / CBS 7966) GN=MGL_2782 PE=3 SV=1
Length = 1607
Score = 181 bits (459), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 149/555 (26%), Positives = 244/555 (43%), Gaps = 55/555 (9%)
Query: 314 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLV-- 371
+++ + K FS+R+VITGD +++VG+P IA+ +T+ ERV +N YL LV
Sbjct: 142 RLRGNLMGKRVDFSARTVITGDPNLELDQVGVPKSIARNLTYPERVTPYNRAYLSDLVRN 201
Query: 372 --DENLCLAY--KEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSL 427
+E Y ++ L+ +G L+ G IV R + DGD V NR P+ HK S+
Sbjct: 202 GPNEYPGARYVIRDTGERIDLKYNRRGDIALQAGWIVERHLRDGDYVLFNRQPSLHKMSM 261
Query: 428 QALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSH 487
A V + D T ++N + P ADFDGD ++L PQS A+AE+ ++ V +Q++S
Sbjct: 262 MAHRVKLMDYSTFRLNLSVTPPYNADFDGDEMNLHVPQSEEARAELAQIAWVPRQIVSPQ 321
Query: 488 XXXXXXXXXXXXX-XXXXXXVKKGFMDRAAANQMAMFLSLP-----LPQPALLKAGSGDC 541
++ MD + M+ LP +PQP +LK
Sbjct: 322 ANKPVMGIVQDTLCGVRKFTLRDCLMDYDQVQNILMW--LPGWDGIVPQPCILKP---KP 376
Query: 542 YWTSTQILQCALPLSFDCTGGR-------------YLIRESDILGFDLGRDVLPAVINEI 588
YW+ Q+L +P + G I +I+ + + V+ + +
Sbjct: 377 YWSGKQLLSLCIPKGINVFLGDAKAASNNFVKDDGVHIENGEIMYGVINKKVVGSTAGGL 436
Query: 589 AASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHDFSISGAVKRITDRNIGK---- 644
+F +GP +FF +Q + + NGFS+G+ D A + I K
Sbjct: 437 IHIIFRERGPVVCRDFFSGVQRVVNYWLLHNGFSIGIGDTVPDKATTVNINETIAKAKSD 496
Query: 645 VSPLL-------------YQLRFIYNELVAQQLEKHMQDIELPAIKFASKSSRLGDMIDS 691
V L+ LR + V + L K D+ A + + + M+ +
Sbjct: 497 VMNLIQAARHDWLKADPGMTLRESFEANVNRILNKARDDVGSHAEQNLPDWNNVKQMVIA 556
Query: 692 KSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKG 751
SK + ++Q +GQQ V G+ G HF D Y G ++
Sbjct: 557 GSKGSFINISQMSACVGQQ-SVEGKRIPFGFRHRSLPHFT------KDDYTPESRGFVEN 609
Query: 752 CFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSN 811
+ GL E H+++ RE ++ ++ +E G + + L+ L DV +CYDGTVRN +N
Sbjct: 610 SYLRGLTAHEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVTICYDGTVRN-STN 668
Query: 812 SIIQFEYGLKAGDNA 826
++I+F YG D A
Sbjct: 669 NVIEFAYGEDGIDGA 683
>G3Q6T9_GASAC (tr|G3Q6T9) DNA-directed RNA polymerase (Fragment) OS=Gasterosteus
aculeatus GN=POLR2A PE=3 SV=1
Length = 1653
Score = 181 bits (459), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 212/884 (23%), Positives = 347/884 (39%), Gaps = 139/884 (15%)
Query: 45 NPFLGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKM 104
+P G+ GRC++C +C GHFG+IEL P++H V+++ K+L VC C K+
Sbjct: 54 DPRQGVIERTGRCQTCA-GNMTECPGHFGHIELAKPVFHVGFVNKIMKVLRCVCFFCSKL 112
Query: 105 KKTKFPSSSSGLAQRLLSPCCQEPNAAQVSIREVKTGDGACY---------------LVL 149
S++ + +L +P + E+ G C
Sbjct: 113 ----LVDSNNPKIKDILIKSKGQPRKRLTHVYELCKGKNICEGGEEMDNKFGMEQQETEE 168
Query: 150 KVSKSKMQDGFWRF--------LDKYGYRYEVDH----TRALL-PCEVMEMIKRFPLETK 196
+SK K G R+ L+ Y V+ + LL P V E+ KR E
Sbjct: 169 DISKEKGHGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRIADEED 228
Query: 197 KKLAGKGYFPQDGY-VIKYLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEVIRS 255
L F + + ++ LPVPP + KL V++
Sbjct: 229 VILGMDPKFARPEWMIVTVLPVPPLAVRPAVVMQGSARNQDD----LTHKLADIVKINNQ 284
Query: 256 SRSGEPNFESHQVEANDLQ-------SVVDQYLQ-----IRGCAKPARDIETHFGVNKEL 303
R E + + V A D++ +++D L ++ +P + ++
Sbjct: 285 LRRNEQSGAAAHVIAEDVKLLQFHVATMIDNELPGLPRVMQKSGRPLKSLKQRL------ 338
Query: 304 SDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHN 363
K +++ + K FS+R+VIT D +I++VG+P IA +TF E V N
Sbjct: 339 -----KGKEGRVRGNLMGKRVDFSARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFN 393
Query: 364 MCYLQKLVDENLCLAYKEGVSTYS--------------LREGSK-GHTYLKPGQIVHRRI 408
+ LQ+LV + G S Y LR K +L+ G V R +
Sbjct: 394 IDRLQELV--------RRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQIGYKVERHM 445
Query: 409 MDGDIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLA 468
DGDI+ NR PT HK S+ V I T ++N + P ADFDGD ++L PQSL
Sbjct: 446 CDGDIIIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLE 505
Query: 469 AKAEVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKKG-FMDRAAANQMAMFLSL- 526
+AE+ EL V + +++ K+ F++R + MFLS
Sbjct: 506 TRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTW 565
Query: 527 --PLPQPALLKAGSGDCYWTSTQILQCALPLSFDCT-----------GGRY--------- 564
+PQPA+LK WT QI +P + G Y
Sbjct: 566 DGKVPQPAILKPRP---LWTGKQIFSLIIPGHINVIRTHSTHPDEEDSGPYKHISPGDTK 622
Query: 565 -LIRESDILGFDLGRDVLPAVINEIAASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSV 623
++ +++ L + L + + G F+ +Q + + G S+
Sbjct: 623 VIVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVVNNWLLIEGHSI 682
Query: 624 GLHD--------FSISGAVKR--------ITDRNIGKVSPLL-YQLRFIYNELVAQQLEK 666
G+ D I +K+ I + ++ P LR + V + L
Sbjct: 683 GIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILND 742
Query: 667 HMQDIELPAIKFASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDV 726
A K S+ + M+ + SK + ++Q I +GQQ V G+ G
Sbjct: 743 ARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINISQVIAVVGQQ-NVEGKRIPFGFKHRT 801
Query: 727 ASHFKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTL 786
HF +K DY + G ++ + GL P E H++ RE ++ ++ +E G +
Sbjct: 802 LPHF-IKDDYGPES-----RGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYI 855
Query: 787 FKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGLK--AGDNASY 828
+ L+ + V+V YDGTVRN N ++Q YG AG+N +
Sbjct: 856 QRRLIKSMESVMVKYDGTVRNSI-NQVVQLRYGEDGLAGENVEF 898
>M0VV68_HORVD (tr|M0VV68) DNA-directed RNA polymerase OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 869
Score = 181 bits (459), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 208/747 (27%), Positives = 315/747 (42%), Gaps = 91/747 (12%)
Query: 304 SDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHN 363
+D WL K +SK S + R + GD R++E+GIP ++A + E VNS+N
Sbjct: 135 TDTHGMKWL---KDAILSKRSDNAFRGTMVGDPKIRLHEIGIPVDLASNLVVSEHVNSYN 191
Query: 364 M------CYLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFIN 417
C L +E L K T +R+ ++ L G VHR + DGD++ IN
Sbjct: 192 FDSINSKCNHYLLANE--VLVIKRSGKTILVRKPNQ----LVIGDTVHRLLQDGDLILIN 245
Query: 418 RPPTTHKHSLQALVVYIHDDHTV-KINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVEL 476
RPP+ H+HSL L + +V INPL C PL DFDGDC+H + PQS+ ++ E+ EL
Sbjct: 246 RPPSVHQHSLIGLSAKLLPIQSVLSINPLCCAPLAGDFDGDCLHGYVPQSIQSRVELGEL 305
Query: 477 FSVEKQLLSSHXXXXXXXXXXXXXXXXXXXV-KKGFMDRAAANQMAMFLSL--PLPQPAL 533
S+ QLL++ + + + Q M L P P PA+
Sbjct: 306 VSLSHQLLNAQDGRSLVSLTHDSLAAAYLLTSSEVLLKKTEIQQFQMLLHPLSPTPGPAI 365
Query: 534 LKA-GSGDCYWTSTQILQCALP--LSFDCTGGRYLIRESDILGFDLGRDVLPAVINEIAA 590
+K+ S WT Q+ LP +SF ++I + ++L L I+ + +
Sbjct: 366 MKSIHSHGPLWTGKQLFSMLLPSDMSFSIESKVHII-DGEVLACPSESFWLQNSISGLFS 424
Query: 591 SVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHD---FSISGAVKRITD-RNIG--- 643
+F G AL Q L E + G SV L D F + +++ D N+
Sbjct: 425 FMFKQYG-DTALELLSSAQDVLCEFLTMRGLSVSLSDIYLFPDHDSRRKLADGVNLALDD 483
Query: 644 ----------KVSPLLYQLRFIYNELVAQQLEKHMQDI---ELPAIK-----FASKSSRL 685
+SP + Y++ D LP IK F S S L
Sbjct: 484 AEEAFRIKQILLSPDSIPILKCYDDCADLSQSYEQSDFIQSNLPIIKSSIMAFKSVFSDL 543
Query: 686 GDMI--------------DSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFK 731
M+ ++ SK ++ K QQ +G QL + AS +
Sbjct: 544 QKMVQQHTARNNSMMIMTNAGSKGSMLKFVQQTACVGLQLPASRFPFRIPSELSCASWNR 603
Query: 732 LKCDYDGDGYPSAE-YGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNL 790
K + G+ Y +++ F GL+P E L+HSIS R S PGTL + L
Sbjct: 604 HKSEGRGECLGGQNLYAVIRNSFAGGLNPLECLLHSISGRANFF--SENADVPGTLTRKL 661
Query: 791 MAILRDVVVCYDGTVRNVCSNSIIQFEYGLKAGDNASYLFPAGE---HVGVLAATAMSNP 847
M LRD+ V YDGTVR+ I+QF Y A D S GE VG AA ++S
Sbjct: 662 MYHLRDLYVAYDGTVRSSYGQQIMQFTYD-TAEDMCSDRNLEGELGAPVGSWAACSISEA 720
Query: 848 AYKAV------LDASPSSNCSWELMKEILLCKVHFRNEPIDRRVILYLNDCDCGRSYCRE 901
AY A+ L+ SP N ++++L C+ +D +L+L+ Y E
Sbjct: 721 AYGALDHPVNSLEESPLMN-----LQDVLKCQK--GGTSMDHVGLLFLSKNLKKYRYGLE 773
Query: 902 NAAYAVKNQLRKVSLKDTAVDFIVEYQQQRKRKGSEIDAGLVGHIHLDEVKLEELKINMA 961
A+ VK+ L V+ D +V + + KGS H HL + + ++ +
Sbjct: 774 YASLEVKDYLEPVNFSDLVDTVMVLHGGCQSTKGSP----WTTHFHLSQEMMTRKRLGLR 829
Query: 962 EVFQRCQEKLDSFNRKR-KFNQIFKRT 987
V + E+ +N KR K N + +
Sbjct: 830 LVVEELTEQ---YNAKRDKLNDVIPKV 853
>Q2PYR5_9FUNG (tr|Q2PYR5) DNA-directed RNA polymerase (Fragment) OS=Mortierella
verticillata GN=RPB1 PE=3 SV=1
Length = 1016
Score = 181 bits (459), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 193/827 (23%), Positives = 333/827 (40%), Gaps = 107/827 (12%)
Query: 74 YIELPVPIYHPSHVSELKKMLSLVCLNCLKMK----KTKFPSSSSGLAQRLLSP------ 123
+IEL P+Y ++++KK+L VC +C K+K +KF A+R+ P
Sbjct: 1 HIELAKPVYLNGFLTKVKKILECVCYSCSKLKIDDNNSKFVR-----ARRIRDPKVRLKA 55
Query: 124 ---------CCQEPNAAQVSIREVKTGDGACYLVLKVSKS---KMQDGFWR--------F 163
C+ + ++E + + K+S Q F + F
Sbjct: 56 VWELAKSKMVCEGGDDIDAEMQEEEVDENGMPRPKKISHGGCGHRQPIFRKEGLGLSVNF 115
Query: 164 LDKYGYRYEVDHTRALLPCEVMEMIKRFPLETKKKLAGKGYFPQDGYVI-KYLPVPPNCL 222
+ + R L P + ++KR E + + F + ++I LP+PP +
Sbjct: 116 KANASDDSQPEGKRTLTPSDAYHILKRISDEDIEAMGLSPEFARPEWMIMTVLPIPPLAV 175
Query: 223 XXXXXXXXXXXXXXXXXXTFLRKLLRKVEVIRSSRSGEPNFESHQVEAND--LQSVVDQY 280
+ +V R ++ G P +H ++ ++ LQ V Y
Sbjct: 176 RPSIQMDGSSTGEDDLTHKLFAIIKTNADVYRCAQDGTP---AHLIQQHEQLLQYHVATY 232
Query: 281 LQIRGCAKPARDIETHFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRI 340
+ +P + G + A K +++ + K FS+R+VITGD I
Sbjct: 233 MDNDIAGQPPAAHKN--GRPLKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSI 290
Query: 341 NEVGIPHEIAQRITFEERVNSHNMCYLQKLVDENLCLAYKEGVSTYSLREG--------S 392
+EVG+P IA+ +T+ E V +N+ LQKLV + + Y +R+ +
Sbjct: 291 DEVGVPRSIARTLTYPELVTPYNIDKLQKLVRNG---PTEHPGAVYVIRDDGQRIDLRWN 347
Query: 393 KGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGA 452
K L+ G V R I DGD+V NR P+ HK S+ + + T ++N + P A
Sbjct: 348 KREVPLQLGWKVERHINDGDVVIFNRQPSLHKMSMMGHKIRVMPYSTFRLNLSVTSPYNA 407
Query: 453 DFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKKG-F 511
DFDGD ++L PQS+ +AE+ E+ V +Q++S K+ F
Sbjct: 408 DFDGDEMNLHVPQSVETRAEITEICMVPRQIVSPQSNKPVMGIVQDTLCGVRKFTKRDCF 467
Query: 512 MDRAAANQMAMFLSLP-----LPQPALLKAGSGDCYWTSTQILQCALPLSFDCT------ 560
+ + + M+ +P LP PA+LK WT Q+L +P +C
Sbjct: 468 LTKEMVMNLVMW--VPGWEGFLPTPAILKPKP---LWTGRQMLSMIIPKGINCICYHSTH 522
Query: 561 -----------GGRYLIRESDILGFDLGRDVLPAVINEIAASVFFGKGPQEALNFFDVLQ 609
+ ++ +++ + + + + + GP+ A FF+ Q
Sbjct: 523 PDNEESDISPGDTKVIVENGELICGIVCKKTVGTSGGGLIHVIMNQHGPEVAKTFFNGCQ 582
Query: 610 PFLMECIFSNGFSVGLHDF----SISGAVKRITDRNIGKVSPLLYQ-------------L 652
+ + +GFS+G+ D S + I V+ L+ Q L
Sbjct: 583 TVVNYWLLQHGFSIGIGDTVADRSTVMTITSIISNATNNVNDLIIQAQQDKLECKPGMTL 642
Query: 653 RFIYNELVAQQLEKHMQDIELPAIKFASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLF 712
R + LV + L D A + + + + M+ S SK + V+Q +GQQ
Sbjct: 643 RETFESLVNRALNTARDDAGKMAQQSLREDNNVKQMVISGSKGSFINVSQMTACVGQQ-N 701
Query: 713 VRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREI 772
V G+ G HF D + G ++ + GL P E H++ RE
Sbjct: 702 VEGKRIPFGFKYRTLPHFT------KDDHSPESRGFVENSYLRGLTPQEFFFHAMGGREG 755
Query: 773 MVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 819
++ ++ +E G + + L+ L DV+V YDGTVRN + +IQF YG
Sbjct: 756 LIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGH-VIQFCYG 801
>Q9NJR9_LEIDO (tr|Q9NJR9) DNA-directed RNA polymerase OS=Leishmania donovani
GN=RNPIILS PE=3 SV=2
Length = 1665
Score = 181 bits (458), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 207/832 (24%), Positives = 337/832 (40%), Gaps = 97/832 (11%)
Query: 52 LEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNC-LKMKKTKFP 110
EY CE+CG +C GHFGY+EL PI++ + + L VC C + T P
Sbjct: 64 FEYS-CETCGLKHP-ECPGHFGYVELAEPIFNINVFDVVLIALKCVCKYCGALLMDTNDP 121
Query: 111 SSSSGLAQ-------RLLSPCC-------QEPNAAQVSIREVKTGDGACY---LVLKVSK 153
S +A R+++ C ++ + R+ + G A L +KV++
Sbjct: 122 SEMKKIAHLQGLNRLRMVAKLCGSVCKRSKDIQGCEGKGRQPRIGRFAGIYPGLQIKVTQ 181
Query: 154 SKMQDGFWRFLDKYGYRYEVDHTRALLPCEVMEMIKRFPLETKKKLAGKGYFPQDGYVIK 213
+ QD W + V + AL +M RF P+D ++
Sbjct: 182 EE-QDYVWHAENARQVLDRVSDSDAL----IMGFDPRF------------CHPRD-LILT 223
Query: 214 YLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEVIRSSRSGEPNFESHQVEANDL 273
LP+PP + + + R +++ + SG + A
Sbjct: 224 VLPIPPPQVRPAVAFASAKSDDELTHQ-IMSIVKRNIQLRKDKESGV-KAAVDRSRALLQ 281
Query: 274 QSVVDQYLQIRGCAKPARDIETHFGVNKELSDASN--KAWLDKMKSLFISKGSGFSSRSV 331
+ V + KPA+ G K+L + K +++ + FS+R+V
Sbjct: 282 EHVATFFNNASTYYKPAK-----VGDTKKLKSLTERLKGKYGRLRGNLMGSRVDFSARTV 336
Query: 332 ITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLVDE------NLCLAYKEGVST 385
ITGD ++EVG+P +A +TF ERVN N L + V N + V+
Sbjct: 337 ITGDPNIDVDEVGVPFSVAMTLTFPERVNVINKKRLTEFVQRTTYPSANYIIRPNGNVTK 396
Query: 386 YSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALVVYIHDDHTVKINPL 445
+L + + +L G +V R ++DGD+V NR PT H+ S+ V + + +T ++N
Sbjct: 397 LALVK-DRNAVHLDVGDVVERHVIDGDVVLFNRQPTLHRMSMMGHRVRVLNYNTFRLNLS 455
Query: 446 ICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXX 505
P ADFDGD ++L PQSL KAE++E+ V K +S +
Sbjct: 456 CTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSYR 515
Query: 506 XV-KKGFMDRAAANQMAMFLSL-PLPQPALLKAGSGDCYWTSTQILQCALP--------- 554
K F+D+ +A++L L LP PA+LK WT QI LP
Sbjct: 516 LTDKDTFVDKYFIQSVALWLDLWELPIPAILKPRP---LWTGKQIFSLILPEVNHPASPY 572
Query: 555 --LSFDCTGGRYLIRESDILGFDLGRDVLPAVINEIAASVFFGKGPQEALNFFDVLQPFL 612
F + +I+ +L + + V+ A + +F +G E F + +Q
Sbjct: 573 DKPPFPHNDKKIMIQRGQLLVGAITKGVVGAAPGSLIHVIFNERGSDEVAKFINGVQRIT 632
Query: 613 MECIFSNGFSVGLHDFSISGA--------VKRITDRNIGKVSPLL----------YQLRF 654
+ FSVG+ D +++ A V T +++ K+ L
Sbjct: 633 TYFNYCFAFSVGVQD-TVADATTLKEMNNVLHKTRQSVEKIGAAANNGQLTRKAGMSLLQ 691
Query: 655 IYNELVAQQLEKHMQDIELPAIKFASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVR 714
+ V L K ++ A+ +++ MI++ SK + + Q F+GQQ V
Sbjct: 692 SFEADVNSALNKCREEAAKKALSNVRRTNSFKVMIEAGSKGSDLNICQIAVFVGQQ-NVA 750
Query: 715 GRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMV 774
G G HF L D Y G+ + GL P E H+++ RE ++
Sbjct: 751 GSRIPFGFRRRTLPHFML------DDYGETSRGMATRGYVEGLQPHEFYFHTMAGREGLI 804
Query: 775 RSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGLKAGDNA 826
++ S+ G L + L+ L DV YDGTVRN + +IQ YG D A
Sbjct: 805 DTAVKTSDTGYLQRKLVKALEDVHASYDGTVRN-ANQELIQLAYGEDGLDGA 855
>A1YIB0_9HOMO (tr|A1YIB0) DNA-directed RNA polymerase (Fragment) OS=Hydnum
repandum GN=RPB1 PE=3 SV=1
Length = 1010
Score = 181 bits (458), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 148/553 (26%), Positives = 241/553 (43%), Gaps = 52/553 (9%)
Query: 314 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLVDE 373
+++ + K FSSR+VITGD ++EVG+P IA +T+ ERV +N+ LQ+LV
Sbjct: 265 RLRGNLMGKRVDFSSRTVITGDPNIMLDEVGVPKSIAMTLTYPERVTPYNIAQLQELVRN 324
Query: 374 N------LCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSL 427
++ LR + +L+ G IV R + DGD V NR P+ HK S+
Sbjct: 325 GPREYPGARYVVRDTGERIDLRYNKRADAFLQYGWIVERHLRDGDYVLFNRQPSLHKMSM 384
Query: 428 QALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSH 487
+ V + T ++N + P ADFDGD +++ PQS +AE+ ++ V +Q++S
Sbjct: 385 MSHRVKLMPYSTFRLNLSVTPPYNADFDGDEMNMHVPQSEETRAELSQIAWVPRQIISPQ 444
Query: 488 XXXXXXXXXXXXX-XXXXXXVKKGFMDRAAANQMAMFL---SLPLPQPALLKAGSGDCYW 543
++ F+D +A + M++ +P PA+L + W
Sbjct: 445 ANKPVMGIVQDTLCGIRKFTLRDTFLDWSAVQNILMWVPDWDGNVPIPAVL---APKPLW 501
Query: 544 TSTQILQCALPLSFDCTGGR------------YLIRESDILGFDLGRDVLPAVINEIAAS 591
T QIL +P+ + LI +I+ + + + A +
Sbjct: 502 TGKQILSMTIPVGINIVRAPEVSSPNPVEDDGMLIENGEIIYGIVDKKTVGAAQGGLVHV 561
Query: 592 VFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHD-FSISGAVKRITDRNIGKVSPLLY 650
VF KGP+ F LQ + +F NGFS+G+ D + + IT+R I +Y
Sbjct: 562 VFREKGPEACRGLFSGLQMVVNYWLFHNGFSIGIGDTIADEKTMDHITNR-IAMAKAKVY 620
Query: 651 Q-----------------LRFIYNELVAQQLEKHMQDIELPAIKFASKSSRLGDMIDSKS 693
+ +R + V +L D A K + + M+ + S
Sbjct: 621 KYIEQGQRDEIKAKPGMTIRESFESEVNAELNICRDDTGRHAEKSLKNDNNVKQMVVAGS 680
Query: 694 KSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGCF 753
K + ++Q +GQQ V G+ G HF D Y G ++ +
Sbjct: 681 KGSFINISQMSACVGQQ-SVEGKRIPFGFKHRTLPHFA------KDDYSPEARGFVENSY 733
Query: 754 FHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSI 813
GL P E H+++ RE ++ ++ +E G + + L+ L DV VCYDGTVRN + I
Sbjct: 734 LRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVAVCYDGTVRNSLGD-I 792
Query: 814 IQFEYGLKAGDNA 826
+QF YG D A
Sbjct: 793 LQFIYGEDGMDGA 805
>Q584K3_TRYB2 (tr|Q584K3) DNA-directed RNA polymerase OS=Trypanosoma brucei
brucei (strain 927/4 GUTat10.1) GN=Tb927.4.5020 PE=3
SV=1
Length = 1765
Score = 181 bits (458), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 156/564 (27%), Positives = 245/564 (43%), Gaps = 54/564 (9%)
Query: 309 KAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQ 368
K +++ + K FS+R+VITGD ++EVG+P +A +TF ERVN+ N L
Sbjct: 337 KGKYGRLRGNLMGKRVDFSARTVITGDPNIDVDEVGVPFSVAMTLTFPERVNTVNKKRLT 396
Query: 369 KLVDENLC-----LAYKEGVST--YSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPT 421
+ + + + G T LR+ SK L G +V R +++GD+V NR PT
Sbjct: 397 EFARRTVYPSANYIHHPNGTITKLALLRDRSK--VTLNIGDVVERHVINGDVVLFNRQPT 454
Query: 422 THKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEK 481
H+ S+ V + + +T ++N P ADFDGD ++L PQSL KAE++E+ V K
Sbjct: 455 LHRMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPK 514
Query: 482 QLLSSHXXXXXXXXXXXXXXXXXXXV-KKGFMDRAAANQMAMFLSL-PLPQPALLKAGSG 539
+S + K F+D+ +A++L L LP PA+LK
Sbjct: 515 NFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFLDKYFVQSVALWLDLWQLPIPAILKPRP- 573
Query: 540 DCYWTSTQILQCALP-----------LSFDCTGGRYLIRESDILGFDLGRDVLPAVINEI 588
WT Q+ LP F +IR +L + + ++ A +
Sbjct: 574 --LWTGKQVFSLILPEVNHPATPQDRPPFPHNDSVVMIRRGQLLCGPITKSIVGAAPGSL 631
Query: 589 AASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHD-FSISGAVKRITD------RN 641
+F G E F + +Q + + GFSVG+ D + S ++++ D RN
Sbjct: 632 IHVIFNEHGSDEVARFINGVQRVTTFFLLNFGFSVGVQDTVADSDTLRQMNDVLVKTRRN 691
Query: 642 IGKVSPLL----------YQLRFIYNELVAQQLEKHMQDIELPAIKFASKSSRLGDMIDS 691
+ K+ L + V L K ++ A+ +++ MI++
Sbjct: 692 VEKIGAAANNRTLNRKAGMTLLQSFEADVNSALNKCREEAAKKALSNVRRTNSFKVMIEA 751
Query: 692 KSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKG 751
SK + Q F+GQQ V G G HF L D Y G+
Sbjct: 752 GSKGTDLNICQIAVFVGQQ-NVAGSRIPFGFRRRTLPHFML------DDYGETSRGMANR 804
Query: 752 CFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSN 811
+ GL P E H+++ RE ++ ++ S+ G L + L+ L DV YDGTVRN ++
Sbjct: 805 GYVEGLKPHEFFFHTMAGREGLIDTAVKTSDTGYLQRKLIKALEDVHAAYDGTVRN-AND 863
Query: 812 SIIQFEYGLKAGDNASY----LFP 831
+IQF YG D A LFP
Sbjct: 864 ELIQFMYGEDGLDGARIEGGQLFP 887
>Q57YU2_TRYB2 (tr|Q57YU2) DNA-directed RNA polymerase OS=Trypanosoma brucei
brucei (strain 927/4 GUTat10.1) GN=Tb927.8.7400 PE=3
SV=1
Length = 1765
Score = 181 bits (458), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 156/564 (27%), Positives = 245/564 (43%), Gaps = 54/564 (9%)
Query: 309 KAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQ 368
K +++ + K FS+R+VITGD ++EVG+P +A +TF ERVN+ N L
Sbjct: 337 KGKYGRLRGNLMGKRVDFSARTVITGDPNIDVDEVGVPFSVAMTLTFPERVNTVNKKRLT 396
Query: 369 KLVDENLC-----LAYKEGVST--YSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPT 421
+ + + + G T LR+ SK L G +V R +++GD+V NR PT
Sbjct: 397 EFARRTVYPSANYIHHPNGTITKLALLRDRSK--VTLNIGDVVERHVINGDVVLFNRQPT 454
Query: 422 THKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEK 481
H+ S+ V + + +T ++N P ADFDGD ++L PQSL KAE++E+ V K
Sbjct: 455 LHRMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPK 514
Query: 482 QLLSSHXXXXXXXXXXXXXXXXXXXV-KKGFMDRAAANQMAMFLSL-PLPQPALLKAGSG 539
+S + K F+D+ +A++L L LP PA+LK
Sbjct: 515 NFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFLDKYFVQSVALWLDLWQLPIPAILKPRP- 573
Query: 540 DCYWTSTQILQCALP-----------LSFDCTGGRYLIRESDILGFDLGRDVLPAVINEI 588
WT Q+ LP F +IR +L + + ++ A +
Sbjct: 574 --LWTGKQVFSLILPEVNHPATPQDRPPFPHNDSVVMIRRGQLLCGPITKSIVGAAPGSL 631
Query: 589 AASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHD-FSISGAVKRITD------RN 641
+F G E F + +Q + + GFSVG+ D + S ++++ D RN
Sbjct: 632 IHVIFNEHGSDEVARFINGVQRVTTFFLLNFGFSVGVQDTVADSDTLRQMNDVLVKTRRN 691
Query: 642 IGKVSPLL----------YQLRFIYNELVAQQLEKHMQDIELPAIKFASKSSRLGDMIDS 691
+ K+ L + V L K ++ A+ +++ MI++
Sbjct: 692 VEKIGAAANNRTLNRKAGMTLLQSFEADVNSALNKCREEAAKKALSNVRRTNSFKVMIEA 751
Query: 692 KSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKG 751
SK + Q F+GQQ V G G HF L D Y G+
Sbjct: 752 GSKGTDLNICQIAVFVGQQ-NVAGSRIPFGFRRRTLPHFML------DDYGETSRGMANR 804
Query: 752 CFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSN 811
+ GL P E H+++ RE ++ ++ S+ G L + L+ L DV YDGTVRN ++
Sbjct: 805 GYVEGLKPHEFFFHTMAGREGLIDTAVKTSDTGYLQRKLIKALEDVHAAYDGTVRN-AND 863
Query: 812 SIIQFEYGLKAGDNASY----LFP 831
+IQF YG D A LFP
Sbjct: 864 ELIQFMYGEDGLDGARIEGGQLFP 887
>Q26794_9TRYP (tr|Q26794) DNA-directed RNA polymerase OS=Trypanosoma brucei PE=3
SV=1
Length = 1765
Score = 181 bits (458), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 156/564 (27%), Positives = 245/564 (43%), Gaps = 54/564 (9%)
Query: 309 KAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQ 368
K +++ + K FS+R+VITGD ++EVG+P +A +TF ERVN+ N L
Sbjct: 337 KGKYGRLRGNLMGKRVDFSARTVITGDPNIDVDEVGVPFSVAMTLTFPERVNTINKKRLT 396
Query: 369 KLVDENLC-----LAYKEGVST--YSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPT 421
+ + + + G T LR+ SK L G +V R +++GD+V NR PT
Sbjct: 397 EFARRTVYPSANYIHHPNGTITKLALLRDRSK--VTLNIGDVVERHVINGDVVLFNRQPT 454
Query: 422 THKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEK 481
H+ S+ V + + +T ++N P ADFDGD ++L PQSL KAE++E+ V K
Sbjct: 455 LHRMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPK 514
Query: 482 QLLSSHXXXXXXXXXXXXXXXXXXXV-KKGFMDRAAANQMAMFLSL-PLPQPALLKAGSG 539
+S + K F+D+ +A++L L LP PA+LK
Sbjct: 515 NFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFLDKYFVQSVALWLDLWQLPIPAILKPRP- 573
Query: 540 DCYWTSTQILQCALP-----------LSFDCTGGRYLIRESDILGFDLGRDVLPAVINEI 588
WT Q+ LP F +IR +L + + ++ A +
Sbjct: 574 --LWTGKQVFSLILPEVNHPATPQDRPPFPHNDSVVMIRRGQLLCGPITKSIVGAAPGSL 631
Query: 589 AASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHD-FSISGAVKRITD------RN 641
+F G E F + +Q + + GFSVG+ D + S ++++ D RN
Sbjct: 632 IHVIFNEHGSDEVARFINGVQRVTTFFLLNFGFSVGVQDTVADSDTLRQMNDVLVKTRRN 691
Query: 642 IGKVSPLL----------YQLRFIYNELVAQQLEKHMQDIELPAIKFASKSSRLGDMIDS 691
+ K+ L + V L K ++ A+ +++ MI++
Sbjct: 692 VEKIGAAANNRTLNRKAGMTLLQSFEADVNSALNKCREEAAKKALSNVRRTNSFKVMIEA 751
Query: 692 KSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKG 751
SK + Q F+GQQ V G G HF L D Y G+
Sbjct: 752 GSKGTDLNICQIAVFVGQQ-NVAGSRIPFGFRRRTLPHFML------DDYGETSRGMANR 804
Query: 752 CFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSN 811
+ GL P E H+++ RE ++ ++ S+ G L + L+ L DV YDGTVRN ++
Sbjct: 805 GYVEGLKPHEFFFHTMAGREGLIDTAVKTSDTGYLQRKLIKALEDVHAAYDGTVRN-AND 863
Query: 812 SIIQFEYGLKAGDNASY----LFP 831
+IQF YG D A LFP
Sbjct: 864 ELIQFMYGEDGLDGARIEGGQLFP 887
>K2NKG9_TRYCR (tr|K2NKG9) DNA-directed RNA polymerase OS=Trypanosoma cruzi
marinkellei GN=MOQ_001563 PE=3 SV=1
Length = 1733
Score = 181 bits (458), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 153/562 (27%), Positives = 237/562 (42%), Gaps = 50/562 (8%)
Query: 309 KAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQ 368
K +++ + K FS+R+VITGD ++EVG+P IA +TF ERVN+ N L
Sbjct: 321 KGKYGRLRGNLMGKRVDFSARTVITGDPNIDVDEVGVPFSIAMTLTFPERVNAINKKRLT 380
Query: 369 KLVDENLC-----LAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTH 423
+ V + + + G +T + L G +V R +++GD+V NR PT H
Sbjct: 381 EFVRRPVYPSANYIHHPNGTTTKLALRRDRSKVTLNIGDVVERHVINGDVVLFNRQPTLH 440
Query: 424 KHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQL 483
+ S+ V + + +T ++N P ADFDGD ++L PQSL KAE++E+ V K
Sbjct: 441 RMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNF 500
Query: 484 LSSHXXXXXXXXXXXXXXXXXXXV-KKGFMDRAAANQMAMFLSL-PLPQPALLKAGSGDC 541
+S + K F+D+ +A++L L LP PA+LK
Sbjct: 501 VSPNKSAPCMGIVQDSLLGSYRLTDKDTFLDKYFVQSVALWLDLWQLPVPAVLKPRP--- 557
Query: 542 YWTSTQILQCALP-----------LSFDCTGGRYLIRESDILGFDLGRDVLPAVINEIAA 590
WT Q+ LP F +IR +L + + ++ A +
Sbjct: 558 LWTGKQVFSLILPEVNHPATPQERPPFPHNDSSIMIRRGQLLCGPITKGIVGAAPGSLIH 617
Query: 591 SVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHDFSISGAVKR-------ITDRNIG 643
+F +G E F + +Q + + GFSVG+ D R T N+
Sbjct: 618 VIFNERGSDEVARFINGVQRITTFFLINFGFSVGVQDTVADADTLRQMNEVLVKTRENVE 677
Query: 644 KVSPLL----------YQLRFIYNELVAQQLEKHMQDIELPAIKFASKSSRLGDMIDSKS 693
K+ L + V L K ++ A+ +++ MI++ S
Sbjct: 678 KIGAAANNRTLNRKAGMTLLQSFEADVNSALNKCREEAAKKALSNVRRTNSFKVMIEAGS 737
Query: 694 KSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGCF 753
K + Q F+GQQ V G G HF L D Y G+ +
Sbjct: 738 KGTDLNICQIAVFVGQQ-NVAGSRIPFGFRRRTLPHFML------DDYGETSRGMANRGY 790
Query: 754 FHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSI 813
GL P E H+++ RE ++ ++ S+ G L + L+ L DV YDGTVRN + +
Sbjct: 791 VEGLKPHEFFFHTMAGREGLIDTAVKTSDTGYLQRKLIKALEDVHAAYDGTVRN-ANQEL 849
Query: 814 IQFEYGLKAGDNASY----LFP 831
IQF YG D A LFP
Sbjct: 850 IQFMYGEDGLDGARIEGGQLFP 871
>Q26791_9TRYP (tr|Q26791) DNA-directed RNA polymerase OS=Trypanosoma brucei PE=3
SV=1
Length = 1765
Score = 181 bits (458), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 156/564 (27%), Positives = 245/564 (43%), Gaps = 54/564 (9%)
Query: 309 KAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQ 368
K +++ + K FS+R+VITGD ++EVG+P +A +TF ERVN+ N L
Sbjct: 337 KGKYGRLRGNLMGKRVDFSARTVITGDPNIDVDEVGVPFSVAMTLTFPERVNTVNKKRLT 396
Query: 369 KLVDENLC-----LAYKEGVST--YSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPT 421
+ + + + G T LR+ SK L G +V R +++GD+V NR PT
Sbjct: 397 EFARRTVYPSANYIHHPNGTITKLALLRDRSK--VTLNIGDVVERHVINGDVVLFNRQPT 454
Query: 422 THKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEK 481
H+ S+ V + + +T ++N P ADFDGD ++L PQSL KAE++E+ V K
Sbjct: 455 LHRMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPK 514
Query: 482 QLLSSHXXXXXXXXXXXXXXXXXXXV-KKGFMDRAAANQMAMFLSL-PLPQPALLKAGSG 539
+S + K F+D+ +A++L L LP PA+LK
Sbjct: 515 NFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFLDKYFVQSVALWLDLWQLPIPAILKPRP- 573
Query: 540 DCYWTSTQILQCALP-----------LSFDCTGGRYLIRESDILGFDLGRDVLPAVINEI 588
WT Q+ LP F +IR +L + + ++ A +
Sbjct: 574 --LWTGKQVFSLILPEVNHPATPQDRPPFPHNDSVVMIRRGQLLCGPITKSIVGAAPGSL 631
Query: 589 AASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHD-FSISGAVKRITD------RN 641
+F G E F + +Q + + GFSVG+ D + S ++++ D RN
Sbjct: 632 IHVIFNEHGSDEVARFINGVQRVTTFFLLNFGFSVGVQDTVADSDTLRQMNDVLVKTRRN 691
Query: 642 IGKVSPLL----------YQLRFIYNELVAQQLEKHMQDIELPAIKFASKSSRLGDMIDS 691
+ K+ L + V L K ++ A+ +++ MI++
Sbjct: 692 VEKIGAAANNRTLNRKAGMTLLQSFEADVNSALNKCREEAAKKALSNVRRTNSFKVMIEA 751
Query: 692 KSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKG 751
SK + Q F+GQQ V G G HF L D Y G+
Sbjct: 752 GSKGTDLNICQIAVFVGQQ-NVAGSRIPFGFRRRTLPHFML------DDYGETSRGMANR 804
Query: 752 CFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSN 811
+ GL P E H+++ RE ++ ++ S+ G L + L+ L DV YDGTVRN ++
Sbjct: 805 GYVEGLKPHEFFFHTMAGREGLIDTAVKTSDTGYLQRKLIKALEDVHAAYDGTVRN-AND 863
Query: 812 SIIQFEYGLKAGDNASY----LFP 831
+IQF YG D A LFP
Sbjct: 864 ELIQFMYGEDGLDGARIEGGQLFP 887
>C9ZMF2_TRYB9 (tr|C9ZMF2) DNA-directed RNA polymerase OS=Trypanosoma brucei
gambiense (strain MHOM/CI/86/DAL972) GN=TbgDal_IV5210
PE=3 SV=1
Length = 1765
Score = 181 bits (458), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 156/564 (27%), Positives = 245/564 (43%), Gaps = 54/564 (9%)
Query: 309 KAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQ 368
K +++ + K FS+R+VITGD ++EVG+P +A +TF ERVN+ N L
Sbjct: 337 KGKYGRLRGNLMGKRVDFSARTVITGDPNIDVDEVGVPFSVAMTLTFPERVNTVNKKRLT 396
Query: 369 KLVDENLC-----LAYKEGVST--YSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPT 421
+ + + + G T LR+ SK L G +V R +++GD+V NR PT
Sbjct: 397 EFARRTVYPSANYIHHPNGTITKLALLRDRSK--VTLNIGDVVERHVINGDVVLFNRQPT 454
Query: 422 THKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEK 481
H+ S+ V + + +T ++N P ADFDGD ++L PQSL KAE++E+ V K
Sbjct: 455 LHRMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPK 514
Query: 482 QLLSSHXXXXXXXXXXXXXXXXXXXV-KKGFMDRAAANQMAMFLSL-PLPQPALLKAGSG 539
+S + K F+D+ +A++L L LP PA+LK
Sbjct: 515 NFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFLDKYFVQSVALWLDLWQLPIPAILKPRP- 573
Query: 540 DCYWTSTQILQCALP-----------LSFDCTGGRYLIRESDILGFDLGRDVLPAVINEI 588
WT Q+ LP F +IR +L + + ++ A +
Sbjct: 574 --LWTGKQVFSLILPEVNHPATPQDRPPFPHNDSVVMIRRGQLLCGPITKSIVGAAPGSL 631
Query: 589 AASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHD-FSISGAVKRITD------RN 641
+F G E F + +Q + + GFSVG+ D + S ++++ D RN
Sbjct: 632 IHVIFNEHGSDEVARFINGVQRVTTFFLLNFGFSVGVQDTVADSDTLRQMNDVLVKTRRN 691
Query: 642 IGKVSPLL----------YQLRFIYNELVAQQLEKHMQDIELPAIKFASKSSRLGDMIDS 691
+ K+ L + V L K ++ A+ +++ MI++
Sbjct: 692 VEKIGAAANNRTLNRKAGMTLLQSFEADVNSALNKCREEAAKKALSNVRRTNSFKVMIEA 751
Query: 692 KSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKG 751
SK + Q F+GQQ V G G HF L D Y G+
Sbjct: 752 GSKGTDLNICQIAVFVGQQ-NVAGSRIPFGFRRRTLPHFML------DDYGETSRGMANR 804
Query: 752 CFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSN 811
+ GL P E H+++ RE ++ ++ S+ G L + L+ L DV YDGTVRN ++
Sbjct: 805 GYVEGLKPHEFFFHTMAGREGLIDTAVKTSDTGYLQRKLIKALEDVHAAYDGTVRN-AND 863
Query: 812 SIIQFEYGLKAGDNASY----LFP 831
+IQF YG D A LFP
Sbjct: 864 ELIQFMYGEDGLDGARIEGGQLFP 887
>A7TNS6_VANPO (tr|A7TNS6) DNA-directed RNA polymerase OS=Vanderwaltozyma
polyspora (strain ATCC 22028 / DSM 70294) GN=Kpol_1016p9
PE=3 SV=1
Length = 1460
Score = 180 bits (457), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 214/891 (24%), Positives = 349/891 (39%), Gaps = 144/891 (16%)
Query: 45 NPFLGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLK- 103
+P +G+ C +C + A C GHFG+I+L +P++H + ++L +C NC
Sbjct: 55 DPKMGVSSSSMECTTCHGNLAS-CHGHFGHIKLALPVFHVGYFKATIQILQGICKNCSSI 113
Query: 104 ----------MKKTKFPSSSS----GLAQRLLSPC-----CQEPNAAQVSIREVKTGDGA 144
+ + + P + + +++L C C A ++ G G+
Sbjct: 114 LLNDTDRRDFLHELRRPGIDNLKRMAIIKKILDQCKKQRRCLTCGALNGVVKRAAAGSGS 173
Query: 145 CYL---------VLKVSKSKMQD--GFWRF-------LDKYGYRYEVDHTRALLPCEVME 186
L V K S + + G W L+++ R D L P + +
Sbjct: 174 ASLKIIHDTFRWVGKKSSPEKDEWVGDWEKVLANNPELERFAKRSMDD----LNPLKTLN 229
Query: 187 MIKRFPLETKKKL-------AGKGYFPQDGYVIKYLPVPPNCLXXXXXXXXXXXXXXXXX 239
+ K+ E + L AG+ + Y+ +YLP PP C+
Sbjct: 230 LFKQIRPEDCELLGIDSTVKAGR----PETYIWRYLPAPPVCIRPSVMMQDSPASNEDDL 285
Query: 240 XTFLRKLLRKVEVIRSSRSGEPNFESHQVEANDLQSVVDQYL--------QIRGCAKPAR 291
L +++ +I++ + + + LQ V Y+ + G +
Sbjct: 286 TVKLTEIVWTSSLIKAGLEKGISINNMMEHWDYLQLSVAMYINSDSVNPSMMPGASSGGA 345
Query: 292 DIETHFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQ 351
+ G + L K + + K FS R+VI+ D I+EV +P +A+
Sbjct: 346 KAKPIRGFCQRL-----KGKQGRFRGNLSGKRVDFSGRTVISPDPNLSIDEVAVPDRVAK 400
Query: 352 RITFEERVNSHNMCYLQKLV--------DENLCLAYKEGVSTYSLREGS--KGHTYLKPG 401
+T+ E+V +N LQ LV N L E + +LR G K L+ G
Sbjct: 401 VLTYPEKVTRYNREKLQALVINGPNVHPGANYILKANEE-ARRNLRYGDRLKIAKQLRVG 459
Query: 402 QIVHRRIMDGDIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHL 461
IV R + DGDIV NR P+ H+ S+ + I T ++N +C P ADFDGD ++L
Sbjct: 460 DIVERHLEDGDIVLFNRQPSLHRLSILSHFAKIRPWRTFRLNECVCTPYNADFDGDEMNL 519
Query: 462 FYPQSLAAKAEVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKK-GFMDRAAANQM 520
PQ+ A+AE + L V+ LL+ K F+DRA Q+
Sbjct: 520 HVPQTEEARAEAMNLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDTFLDRATFTQL 579
Query: 521 AMFLS-----LPLPQPALLKAGSGDCYWTSTQILQC------------------------ 551
+S +P P ++K C WT Q+
Sbjct: 580 LSMMSDSNLQFDIPPPTIIKPY---CLWTGKQLFSLLIKPNKDSPVVINLDAKNKVFIPP 636
Query: 552 ---ALPLSFDCTGGRYLIRESDILGFDLGRDVL-PAVINEIAASVFFGKGPQEALNFFDV 607
+LP G +IR S IL + + VL + + ++ GPQEA N +
Sbjct: 637 KSKSLPNEMSQNDGFVVIRGSQILSGVMDKSVLGDGKKHSVFYTILRDYGPQEAANAMNR 696
Query: 608 LQPFLMECIFSNGFSVGLHDFSISGAVKR----ITDRNIGKVSPLLYQLRFIYNELVAQQ 663
+ + + GFS+G+ D + A+K+ + + K L+ F +L Q
Sbjct: 697 MAKLCARYLGNRGFSIGISDVTPDNALKQKKEELVEIAYAKCDELIDL--FTKGKLETQP 754
Query: 664 LEKHMQDIELPAIKFASK-SSRLGD--------------MIDSKSKSALDKVTQQIGFLG 708
Q +E SK +GD M SK + V+Q + +G
Sbjct: 755 GCNEEQTLEAKIGGLLSKVREEVGDICINELDNLNAPLIMATCGSKGSNLNVSQMVAVVG 814
Query: 709 QQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSIS 768
QQ+ + G G + HF+ P ++ G ++ FF GL P E L H+IS
Sbjct: 815 QQI-ISGNRVPDGFQDRSLPHFR-----KNSKTPQSK-GFVRNSFFSGLSPPEFLFHAIS 867
Query: 769 TREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 819
RE +V ++ +E G + + LM L D+ YD TVR SN I+QF YG
Sbjct: 868 GREGLVDTAVKTAETGYMSRRLMKSLEDLSCQYDNTVRT-SSNGIVQFTYG 917
>M2N508_9PEZI (tr|M2N508) DNA-directed RNA polymerase OS=Baudoinia compniacensis
UAMH 10762 GN=BAUCODRAFT_85149 PE=3 SV=1
Length = 1789
Score = 180 bits (457), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 157/552 (28%), Positives = 244/552 (44%), Gaps = 60/552 (10%)
Query: 314 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLV-- 371
+++ + K FS+R+VITGD +++VG+P IA+ +TF E VN++N+ LQ+LV
Sbjct: 353 RLRGNLMGKRVDFSARTVITGDPNLDLDQVGVPRSIAKTLTFPETVNAYNIQKLQELVRN 412
Query: 372 --DENLCLAY---KEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHS 426
+E+ Y EG LR +K L+ G V R I+DGD + NR P+ HK S
Sbjct: 413 GPNEHPGARYVIRGEG-ERIDLRR-AKNDVQLQYGWKVERHIVDGDYIIFNRQPSLHKES 470
Query: 427 LQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSS 486
+ V + T ++N + P ADFDGD ++L PQS +AEV EL +V K ++S
Sbjct: 471 MMGHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSHETRAEVSELCAVPKNIVSP 530
Query: 487 HXXXXXXXXXXXXXXXXXXXVKKGFMDRAAANQMAMFLSLP-----LPQPALLKAGSGDC 541
++ M N M + L LP +PQPA+L+
Sbjct: 531 QKNGPLMGIVQDTMAGIYMMTRRDVM-IDYENVMNILLWLPNWDGVVPQPAILRPKP--- 586
Query: 542 YWTSTQILQCALPLSF------DCTGGRYLIRESDILGFDLGRDVLPAVINEIAASVFFG 595
WT QI+ ALP D ++E L G VL + +I + G
Sbjct: 587 MWTGKQIISLALPAGLNLQRMDDENTPHIPLKEKKGLLVQNGDLVLGRFVKKIVGASQGG 646
Query: 596 -----------KGPQEALNFFDVLQPFLMECIFSNGFSVGLHDF--------SISGAVKR 636
+GP+ A+ FF+ Q + + NGFSVG+ D I AV++
Sbjct: 647 VVHYIFNDNGSEGPKAAVEFFNAAQRVVCYWLLHNGFSVGIGDTVPNQDMANKIEAAVQK 706
Query: 637 ITDRNIGKVSPLL---------YQLRFIYNELVAQQLEKHMQDIELPAIKFASKSSRLGD 687
D+ + V + +R + L+ + A + +G
Sbjct: 707 EKDQLLELVKTVENNELETLPGMTIRETFESKAKSFLDNARNNAGDIAFNGMRACNNVGT 766
Query: 688 MIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYG 747
M+ S SK + V+Q +GQQ + G+ G HF D Y A G
Sbjct: 767 MVQSGSKGSSTNVSQMTAAVGQQ-SLEGKRLPFGFKYRTLPHFP------KDDYSPASRG 819
Query: 748 LLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRN 807
++ + GL P E H++ RE ++ ++ +E G + + L+ L +V+V YDGTVRN
Sbjct: 820 FVENSYLRGLTPHEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEEVMVKYDGTVRN 879
Query: 808 VCSNSIIQFEYG 819
+ I+QF YG
Sbjct: 880 SMGD-IVQFIYG 890
>G8BX78_TETPH (tr|G8BX78) DNA-directed RNA polymerase OS=Tetrapisispora phaffii
(strain ATCC 24235 / CBS 4417 / NBRC 1672 / NRRL Y-8282
/ UCD 70-5) GN=TPHA0H01760 PE=3 SV=1
Length = 1459
Score = 180 bits (456), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 215/891 (24%), Positives = 346/891 (38%), Gaps = 144/891 (16%)
Query: 45 NPFLGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLK- 103
+P +G+ C +C + A C GHFG+I+L +P++H + ++L VC +C
Sbjct: 55 DPKMGVSSSTLECSTCHGNLAS-CHGHFGHIKLSLPVFHVGYFKATIQILQGVCKSCSAI 113
Query: 104 ----------MKKTKFPSSSS----GLAQRLLSPC-----CQEPNAAQVSIREVKTGDGA 144
+ + + P + + +++L C C E ++ TG G+
Sbjct: 114 LLNDTDKRHFLHELRKPDIDNLKRMSILKKILDQCKKQRRCLECGDLNGVVKRAATGSGS 173
Query: 145 CYLVLK------VSKSKMQD-----GFWRF-------LDKYGYRYEVDHTRALLPCEVME 186
L + V K + + G W L+K+ R D L P + +
Sbjct: 174 ASLKIIHDTFRWVGKKNVPEKDKWIGDWNQVLTNNPELEKFIKRCTDD----LNPLKTLN 229
Query: 187 MIKRFPLETKKKLAGKGYFPQ---DGYVIKYLPVPPNCLXXXXXXXXXXXXXXXXXXTFL 243
+ K+ E + L + Y+ +YLP PP C+ L
Sbjct: 230 LFKQIKNEDCELLGIDSTVASGRPETYIWRYLPAPPVCIRPSVMMQDSSASNEDDLTVKL 289
Query: 244 RKLLRKVEVIRSSRSGEPNFESHQVEANDLQSVVDQYLQIRGC-------------AKPA 290
+++ +I++ + + + LQ V Y+ AKP
Sbjct: 290 TEIVWTSSLIKAGLEKGISINNMMEHWDYLQLSVAMYINSDSVNLLVMPGSNGGTKAKPI 349
Query: 291 RDIETHFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIA 350
R G + L K + + K FS R+VI+ D I+EV +P +A
Sbjct: 350 R------GFCQRL-----KGKQGRFRGNLSGKRVDFSGRTVISPDPNLSIDEVAVPELVA 398
Query: 351 QRITFEERVNSHNMCYLQKLV--------DENLCLAYKEGVSTYSLREGSKGH--TYLKP 400
+ +T+ E+V +N LQKLV N L E + +LR G++ L+
Sbjct: 399 KVLTYPEKVTRYNKTKLQKLVMNGPNVHPGANYLLKSNEE-ARRNLRYGNRDKLAKQLRI 457
Query: 401 GQIVHRRIMDGDIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVH 460
G IV R + DGDIV NR P+ H+ S+ + I T ++N +C P ADFDGD ++
Sbjct: 458 GDIVERHLEDGDIVLFNRQPSLHRLSILSHFAKIRPWRTFRLNECVCTPYNADFDGDEMN 517
Query: 461 LF-YPQSLAAKAEVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKK-GFMDRAAAN 518
L Y Q+ A+AE + L V+ LL+ K F DRA
Sbjct: 518 LLCYQQTEEARAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFFDRATLT 577
Query: 519 QMAMFLS-----LPLPQPALLKAGSGDCYWTSTQILQCAL-------------------- 553
Q+ +S +P PA+ K C WT QI +
Sbjct: 578 QLLSMMSDANLKFDIPPPAIFKP---QCLWTGKQIFSLLIKPNKESPVVINLDAKNKVYI 634
Query: 554 -------PLSFDCTGGRYLIRESDILGFDLGRDVL-PAVINEIAASVFFGKGPQEALNFF 605
P G +IR S+IL + + VL + + ++ GPQE+ N
Sbjct: 635 PPQNKSWPSEMSPNDGYVIIRGSEILSGVMDKSVLGDGKKHSVFYTILRDYGPQESANAM 694
Query: 606 DVLQPFLMECIFSNGFSVGLHDFSISGAVKRITDRNIGKVSPLLYQLRFIYN--ELVAQQ 663
+ + + + GFS+G+ D + +K + + +L YN EL Q
Sbjct: 695 NRMAKLCARYLGNRGFSIGISDVTPGEELKLKKEDLVEIAYKKCDELIIQYNKGELETQP 754
Query: 664 LEKHMQDIELPAIKFASK-SSRLGD--------------MIDSKSKSALDKVTQQIGFLG 708
Q +E SK +GD M SK + V+Q + +G
Sbjct: 755 GCNEEQTLEAKIGGLLSKVREEVGDVCINELDNLNAPLIMATCGSKGSNLNVSQMVAVVG 814
Query: 709 QQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSIS 768
QQ+ + G G + HF+ P ++ G ++ FF GL P E L H+IS
Sbjct: 815 QQI-ISGNRVPDGFQDRSLPHFE-----KNSKTPQSK-GFVRNSFFTGLTPPEFLFHAIS 867
Query: 769 TREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 819
RE +V ++ +E G + + LM L D+ YD T+R SN I+QF YG
Sbjct: 868 GREGLVDTAVKTAETGYMSRRLMKSLEDLSCQYDNTIR-TSSNGIVQFTYG 917
>M2QWM8_CERSU (tr|M2QWM8) DNA-directed RNA polymerase OS=Ceriporiopsis
subvermispora B GN=CERSUDRAFT_110068 PE=3 SV=1
Length = 1749
Score = 180 bits (456), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 146/560 (26%), Positives = 248/560 (44%), Gaps = 66/560 (11%)
Query: 314 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLVDE 373
+++ + K FS+R+VITGD ++EVG+P IA +TF ERV +N+ YLQ+LV
Sbjct: 347 RLRGNLMGKRVDFSARTVITGDPNLDLDEVGVPRSIAMNLTFPERVTPYNIAYLQELV-- 404
Query: 374 NLCLAYKEGVSTYS--------------LREGSKGHTYLKPGQIVHRRIMDGDIVFINRP 419
+ G +TY LR + +L+ G IV R + DGD V NR
Sbjct: 405 ------RNGPTTYPGARYVVRDTGERIDLRYNKRADAFLQYGWIVERHLKDGDFVLFNRQ 458
Query: 420 PTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSV 479
P+ HK S+ + V + T ++N + P ADFDGD +++ PQS +AE+ ++ V
Sbjct: 459 PSLHKMSMMSHRVKLMPYSTFRLNLSVTPPYNADFDGDEMNMHVPQSEETRAELSQIAWV 518
Query: 480 EKQLLSSHXXXXXXXXXXXXX-XXXXXXVKKGFMDRAAANQMAMFLS---LPLPQPALLK 535
+Q++S ++ F+D + + +++ +P PA++K
Sbjct: 519 PRQIISPQANKPVMGIVQDTLCGIRKFTLRDTFLDWSQVQNILLWVPDWDGSVPTPAVIK 578
Query: 536 AGSGDCYWTSTQILQCALPLSFDCTGGR------------YLIRESDILGFDLGRDVLPA 583
WT QIL +P + +I +I+ + + + A
Sbjct: 579 PKP---LWTGKQILSMVIPRGINIHRSPDPKSPNPVFDDGMMIENGEIIFGIVEKKTVGA 635
Query: 584 VINEIAASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHDF-----SISGAVKRIT 638
+ VF KGP+ F +Q + +F NGFS+G+ D ++ ++I
Sbjct: 636 SQGGLIHVVFREKGPEACRTLFGGIQTVVNYWLFHNGFSIGIGDTIADRPTMDHIKEQIQ 695
Query: 639 DR--NIGKVSPLLYQLRF------IYNELVAQQLEKHMQDIELPAIKFASKS----SRLG 686
R N+ + R E ++E+ + + ++A KS + +
Sbjct: 696 TRKQNVAQTIDDATHDRLKAAPGMTIRESFESKVERELNLARDQSGQYAQKSLKEDNNVK 755
Query: 687 DMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEY 746
M+ + SK + ++Q +GQQ+ V GR G HF D +
Sbjct: 756 QMVVAGSKGSFINISQMSVCVGQQI-VEGRRIPFGFRHRSLPHFT------KDDFSPESR 808
Query: 747 GLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVR 806
G ++ + GL P E H+++ RE ++ ++ +E G + + L+ L DV+VCYDGTVR
Sbjct: 809 GFVENSYLRGLTPHEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMVCYDGTVR 868
Query: 807 NVCSNSIIQFEYGLKAGDNA 826
N + +IQF YG D A
Sbjct: 869 NSLGD-LIQFVYGEDGMDGA 887
>F8QG95_SERL3 (tr|F8QG95) DNA-directed RNA polymerase OS=Serpula lacrymans var.
lacrymans (strain S7.3) GN=SERLA73DRAFT_98944 PE=3 SV=1
Length = 1741
Score = 179 bits (455), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 149/557 (26%), Positives = 251/557 (45%), Gaps = 60/557 (10%)
Query: 314 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLVDE 373
+++ + K FS+R+VITGD ++EVG+P IA +T+ ERV +N+ YLQ+LV
Sbjct: 344 RLRGNLMGKRVDFSARTVITGDPNLELDEVGVPRSIAMNLTYPERVTPYNIAYLQELV-R 402
Query: 374 NLCLAY-------KEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHS 426
N AY ++ LR + +L+ G IV R + DGD V NR P+ HK S
Sbjct: 403 NGPTAYPGARYVVRDTGERIDLRYNKRADAFLQYGWIVERHLKDGDFVLFNRQPSLHKMS 462
Query: 427 LQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSS 486
+ + V + T ++N + P ADFDGD +++ PQS +AE+ ++ V +Q++S
Sbjct: 463 MMSHRVKLMPYSTFRLNLSVTPPYNADFDGDEMNMHVPQSEETRAELSQIAWVPRQIISP 522
Query: 487 HXXXXXXXXXXXXX-XXXXXXVKKGFMDRAAANQMA-MFLSLP-----LPQPALLKAGSG 539
++ F+D NQ+ + L +P +P P+++K
Sbjct: 523 QANKPVMGIVQDTLCGIRKFTLRDTFLD---WNQVQNILLWVPDWDGNVPIPSIIKPKP- 578
Query: 540 DCYWTSTQILQCALPLSFDCTGGR------------YLIRESDILGFDLGRDVLPAVINE 587
WT QIL +P + LI +I+ + + + A
Sbjct: 579 --LWTGKQILSMVIPRGINIHRAPEPKSSNPVFDDGMLIENGEIVFGIVEKKTVGASQGG 636
Query: 588 IAASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHDF-----SISGAVKRITDRNI 642
+ VF KGP F +Q + +F NGFS+G+ D ++S ++I+ + +
Sbjct: 637 LVHVVFREKGPDATRQIFTGIQMVVNFWLFHNGFSIGIGDTIADTKTMSYITQQISSQKV 696
Query: 643 GKVSPLL-------------YQLRFIYNELVAQQLEKHMQDIELPAIKFASKSSRLGDMI 689
KV+ ++ +R + V ++L D A K + + + M+
Sbjct: 697 -KVAGIIDDATHDRLKAAPGMTIRESFESKVQRELNLARDDCGQYAQKSLKEDNNVKQMV 755
Query: 690 DSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLL 749
+ SK + ++Q +GQQ V GR G HF D + G +
Sbjct: 756 VAGSKGSFINISQMSVCVGQQS-VEGRRIPFGFRHRTLPHFT------KDDFSPEARGFV 808
Query: 750 KGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVC 809
+ + GL P E H+++ RE ++ ++ +E G + + L+ L DV+VCYDGTVRN
Sbjct: 809 ENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMVCYDGTVRNSL 868
Query: 810 SNSIIQFEYGLKAGDNA 826
+ ++QF YG D A
Sbjct: 869 GD-LVQFVYGEDGMDGA 884
>H8X2B4_CANO9 (tr|H8X2B4) DNA-directed RNA polymerase OS=Candida orthopsilosis
(strain 90-125) GN=CORT_0B11370 PE=3 SV=1
Length = 1443
Score = 179 bits (455), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 215/880 (24%), Positives = 351/880 (39%), Gaps = 131/880 (14%)
Query: 48 LGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKM--- 104
+G+ C +C + A C GHFG+I L +P++H + + +L VC NC +
Sbjct: 59 MGISSNSSECATCHGNLAS-CNGHFGHIRLALPVFHVGYFKAVISVLQCVCKNCGAILLE 117
Query: 105 --KKTKFPSS----------SSGLAQRLLSPC-----CQEPNAAQVSIREVKTGDGACYL 147
K +F S + +++ C C + N +++ +G G L
Sbjct: 118 PQAKRQFLSELRRPNIDNLKRMKILKKINDQCKKQRRCLKCNHVNGVVKKAASGAGPASL 177
Query: 148 VL----------------KVSKSKMQDGFWRF--LDKYGYRYEVDHTRALLPCEVMEMIK 189
+ V + F R L+K+ R + D P + + + K
Sbjct: 178 KIVHDTFRWIGKKDTPEKTVWDEDLDLVFKRNPDLEKFAKRIQEDFN----PLKTLNLFK 233
Query: 190 RFPLETKKKL---AGKGYFPQDGYVIKYLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKL 246
+ E + L A KG P+ Y+ +YLP PP C+ L ++
Sbjct: 234 QIIPEDCELLGMDASKGGRPE-MYIWRYLPAPPVCIRPSVMMDAQSNEDDLTVK--LTEI 290
Query: 247 LRKVEVIRSSRSGEPNFESHQVEANDLQSVVDQYLQIRGCAKPARDIETHFGVNKELSDA 306
+ +I++ + + + + + LQ V Y+ A PA + + G S
Sbjct: 291 VWTSSMIKAGIAKGISINNLMEQWDYLQLSVAMYIN-SDAANPA--LMSGGGGGGSKSAK 347
Query: 307 SNKAWLDKMKS---LFISKGSG----FSSRSVITGDGYKRINEVGIPHEIAQRITFEERV 359
+ + ++K F SG FS R+VI+ D +I+EV +P +A+ +T+ E+
Sbjct: 348 PIRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKC 407
Query: 360 NSHNMCYLQKLV--------DENLCLAYKEGVSTYSLREGS--KGHTYLKPGQIVHRRIM 409
+N LQ L+ N + E +LR G K L+ G +V R I
Sbjct: 408 TRYNKKKLQCLIINGPDVHPGANYVMKQNEA-GKRNLRFGDRVKLAKSLQIGDVVERHIE 466
Query: 410 DGDIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAA 469
DGD+V NR P+ H+ S+ A + T ++N +C P ADFDGD ++L PQ+ A
Sbjct: 467 DGDVVLFNRQPSLHRLSILAHYAKVRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEA 526
Query: 470 KAEVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKK-GFMDRAAANQMAMFLS--- 525
+AE + L V+ LL+ K F DRA+ Q+ +S
Sbjct: 527 RAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFFDRASLVQLLSMMSDAD 586
Query: 526 --LPLPQPALLKAGSGDCYWTSTQILQC--------------------------ALPLSF 557
+P PA++K WT Q+ LP
Sbjct: 587 IQFDIPPPAIMKPV---MLWTGKQVFSLLIKPNRQSKVVINLNAKNKTFHPPAKGLPSEM 643
Query: 558 DCTGGRYLIRESDILGFDLGRDVL-PAVINEIAASVFFGKGPQEALNFFDVLQPFLMECI 616
G LIR S IL + + L + + ++ GPQEA + + +
Sbjct: 644 SPNDGFVLIRGSQILSGLMDKSTLGDGKKHSVFYTILRDYGPQEAAAAMNRMAKLCARFL 703
Query: 617 FSNGFSVGLHDFSISGAVKRITDRNIGKVSPLLYQLRFIYN--ELVAQQLEKHMQDIELP 674
+ GFS+G++D + + +K+ + + + QL +YN +L Q Q +E
Sbjct: 704 GNRGFSIGINDVTPAHELKQKKELMVEQAYLKCDQLIDLYNRGKLETQPGCNEEQTLEAK 763
Query: 675 AIKFASK-SSRLGD--------------MIDSKSKSALDKVTQQIGFLGQQLFVRGRLYS 719
SK +GD M SK + V+Q + +GQQ+ + G
Sbjct: 764 IGGLLSKVREEVGDVCIRELDSLNAPLIMATCGSKGSTLNVSQMVAVVGQQI-ISGHRVP 822
Query: 720 KGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRG 779
G + HF P ++ G ++ FF GL P E L H+IS RE +V ++
Sbjct: 823 DGFQDRSLPHFT-----KNSKTPQSK-GFVRNSFFSGLSPPEFLFHAISGREGLVDTAVK 876
Query: 780 LSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 819
+E G + + LM L D+ YD TVRN SN I+QF YG
Sbjct: 877 TAETGYMSRRLMKSLEDLSSQYDNTVRN-SSNGIVQFTYG 915
>F8PAY6_SERL9 (tr|F8PAY6) DNA-directed RNA polymerase OS=Serpula lacrymans var.
lacrymans (strain S7.9) GN=SERLADRAFT_453400 PE=3 SV=1
Length = 1744
Score = 179 bits (455), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 149/557 (26%), Positives = 251/557 (45%), Gaps = 60/557 (10%)
Query: 314 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLVDE 373
+++ + K FS+R+VITGD ++EVG+P IA +T+ ERV +N+ YLQ+LV
Sbjct: 347 RLRGNLMGKRVDFSARTVITGDPNLELDEVGVPRSIAMNLTYPERVTPYNIAYLQELV-R 405
Query: 374 NLCLAY-------KEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHS 426
N AY ++ LR + +L+ G IV R + DGD V NR P+ HK S
Sbjct: 406 NGPTAYPGARYVVRDTGERIDLRYNKRADAFLQYGWIVERHLKDGDFVLFNRQPSLHKMS 465
Query: 427 LQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSS 486
+ + V + T ++N + P ADFDGD +++ PQS +AE+ ++ V +Q++S
Sbjct: 466 MMSHRVKLMPYSTFRLNLSVTPPYNADFDGDEMNMHVPQSEETRAELSQIAWVPRQIISP 525
Query: 487 HXXXXXXXXXXXXX-XXXXXXVKKGFMDRAAANQMA-MFLSLP-----LPQPALLKAGSG 539
++ F+D NQ+ + L +P +P P+++K
Sbjct: 526 QANKPVMGIVQDTLCGIRKFTLRDTFLD---WNQVQNILLWVPDWDGNVPIPSIIKPKP- 581
Query: 540 DCYWTSTQILQCALPLSFDCTGGR------------YLIRESDILGFDLGRDVLPAVINE 587
WT QIL +P + LI +I+ + + + A
Sbjct: 582 --LWTGKQILSMVIPRGINIHRAPEPKSSNPVFDDGMLIENGEIVFGIVEKKTVGASQGG 639
Query: 588 IAASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHDF-----SISGAVKRITDRNI 642
+ VF KGP F +Q + +F NGFS+G+ D ++S ++I+ + +
Sbjct: 640 LVHVVFREKGPDATRQIFTGIQMVVNFWLFHNGFSIGIGDTIADTKTMSYITQQISSQKV 699
Query: 643 GKVSPLL-------------YQLRFIYNELVAQQLEKHMQDIELPAIKFASKSSRLGDMI 689
KV+ ++ +R + V ++L D A K + + + M+
Sbjct: 700 -KVAGIIDDATHDRLKAAPGMTIRESFESKVQRELNLARDDCGQYAQKSLKEDNNVKQMV 758
Query: 690 DSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLL 749
+ SK + ++Q +GQQ V GR G HF D + G +
Sbjct: 759 VAGSKGSFINISQMSVCVGQQS-VEGRRIPFGFRHRTLPHFT------KDDFSPEARGFV 811
Query: 750 KGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVC 809
+ + GL P E H+++ RE ++ ++ +E G + + L+ L DV+VCYDGTVRN
Sbjct: 812 ENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMVCYDGTVRNSL 871
Query: 810 SNSIIQFEYGLKAGDNA 826
+ ++QF YG D A
Sbjct: 872 GD-LVQFVYGEDGMDGA 887
>C9ZWN4_TRYB9 (tr|C9ZWN4) DNA-directed RNA polymerase (Fragment) OS=Trypanosoma
brucei gambiense (strain MHOM/CI/86/DAL972)
GN=TbgDal_VIII7660 PE=3 SV=1
Length = 948
Score = 179 bits (455), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 156/564 (27%), Positives = 245/564 (43%), Gaps = 54/564 (9%)
Query: 309 KAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQ 368
K +++ + K FS+R+VITGD ++EVG+P +A +TF ERVN+ N L
Sbjct: 337 KGKYGRLRGNLMGKRVDFSARTVITGDPNIDVDEVGVPFSVAMTLTFPERVNTVNKKRLT 396
Query: 369 KLVDENLC-----LAYKEGVST--YSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPT 421
+ + + + G T LR+ SK L G +V R +++GD+V NR PT
Sbjct: 397 EFARRTVYPSANYIHHPNGTITKLALLRDRSK--VTLNIGDVVERHVINGDVVLFNRQPT 454
Query: 422 THKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEK 481
H+ S+ V + + +T ++N P ADFDGD ++L PQSL KAE++E+ V K
Sbjct: 455 LHRMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPK 514
Query: 482 QLLSSHXXXXXXXXXXXXXXXXXXXV-KKGFMDRAAANQMAMFLSL-PLPQPALLKAGSG 539
+S + K F+D+ +A++L L LP PA+LK
Sbjct: 515 NFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFLDKYFVQSVALWLDLWQLPIPAILKPRP- 573
Query: 540 DCYWTSTQILQCALP-----------LSFDCTGGRYLIRESDILGFDLGRDVLPAVINEI 588
WT Q+ LP F +IR +L + + ++ A +
Sbjct: 574 --LWTGKQVFSLILPEVNHPATPQDRPPFPHNDSVVMIRRGQLLCGPITKSIVGAAPGSL 631
Query: 589 AASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHD-FSISGAVKRITD------RN 641
+F G E F + +Q + + GFSVG+ D + S ++++ D RN
Sbjct: 632 IHVIFNEHGSDEVARFINGVQRVTTFFLLNFGFSVGVQDTVADSDTLRQMNDVLVKTRRN 691
Query: 642 IGKVSPLL----------YQLRFIYNELVAQQLEKHMQDIELPAIKFASKSSRLGDMIDS 691
+ K+ L + V L K ++ A+ +++ MI++
Sbjct: 692 VEKIGAAANNRTLNRKAGMTLLQSFEADVNSALNKCREEAAKKALSNVRRTNSFKVMIEA 751
Query: 692 KSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKG 751
SK + Q F+GQQ V G G HF L D Y G+
Sbjct: 752 GSKGTDLNICQIAVFVGQQ-NVAGSRIPFGFRRRTLPHFML------DDYGETSRGMANR 804
Query: 752 CFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSN 811
+ GL P E H+++ RE ++ ++ S+ G L + L+ L DV YDGTVRN ++
Sbjct: 805 GYVEGLKPHEFFFHTMAGREGLIDTAVKTSDTGYLQRKLIKALEDVHAAYDGTVRN-AND 863
Query: 812 SIIQFEYGLKAGDNASY----LFP 831
+IQF YG D A LFP
Sbjct: 864 ELIQFMYGEDGLDGARIEGGQLFP 887
>L7ML82_9ACAR (tr|L7ML82) DNA-directed RNA polymerase (Fragment) OS=Rhipicephalus
pulchellus PE=2 SV=1
Length = 1429
Score = 179 bits (454), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 213/879 (24%), Positives = 362/879 (41%), Gaps = 127/879 (14%)
Query: 48 LGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKM--- 104
LG + +CE+CG C GHFG + L +P++H + + +L VC C ++
Sbjct: 60 LGTSQKDKKCETCGKGLT-DCVGHFGQVSLGMPVFHVGYFKAVYNILHTVCKMCARVMLP 118
Query: 105 --KKTKF------PSSS----SGLAQRLLSPCCQEPNAAQVSIR--EVKTGDGACYLVLK 150
++ +F PS+S L ++++ C ++ + + +VK ++ +
Sbjct: 119 PPERARFLDMVQRPSTSFLTKKSLHKKIVEICRKQASCPFCGVVNGQVKKCGLLKFVYER 178
Query: 151 VSKSKMQDGFWRFL-DKY----GYRYEVDH------TRALLPCEVMEMIKRFPLETKKKL 199
K +G + L D Y Y E+D + L P V ++++R P E L
Sbjct: 179 YKAHKKNEGVIKDLQDDYQEARSYNNEIDSVINKVTSDILNPLVVRDLLRRIPDEDVPLL 238
Query: 200 A--GKGYFPQDGYVIKYLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEVIRSSR 257
+ P+D V+ ++PVPP C+ L +++ +V+
Sbjct: 239 LMNTRCGRPED-LVLTHIPVPPLCIRPSVVSALKAGTNEDDVTVKLTEIIFLNDVL---- 293
Query: 258 SGEPNFESHQVEANDLQSVVDQ--YLQIRGCAKPARDIETHFGVNKELSDASNKAWLDKM 315
+ H+ + +++ +LQ++ CA + +N + + ++ ++
Sbjct: 294 ------QKHRTNGGKMSMIMEDWDFLQLQ-CALYVNSETSGIPLNMQ-PKKPTRGFVQRL 345
Query: 316 KS---LFISKGSG----FSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQ 368
K F SG FS R+VI+ D RI+EVG+P +A+ +T+ ERV HN+ ++
Sbjct: 346 KGKHGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVGVPEHVAKILTYPERVTQHNIELMR 405
Query: 369 KLVDE--------NLCLAYKEGVSTYSLREGSKGHT--YLKPGQIVHRRIMDGDIVFINR 418
+L+ N G+ Y LR G++ L+ G +V R + DGD+V NR
Sbjct: 406 QLIRNGCDVHPGANFLECRGTGIKRY-LRYGNREQLAQQLRLGDMVERHLKDGDVVLFNR 464
Query: 419 PPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFS 478
P+ HK S+ A V + T + N +C P ADFDGD ++L PQ+ A+AE + L
Sbjct: 465 QPSLHKLSIMAHVAKVLPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEARAEALILMG 524
Query: 479 VEKQLLSSHXXXXXXXXXXXXXXXXXXXVKKG-FMDRAAANQMA--MF------LSLPLP 529
L++ +K F+DR A Q+A M + + LP
Sbjct: 525 TRANLVTPRNGEPLIAAIQDFITGGYLITQKDVFLDRIKACQLASCMLAGKDTNMKVELP 584
Query: 530 QPALLKAGSGDCYWTSTQILQCALPLSFD--------------------CTGGRY-LIRE 568
PA+LK C WT QI + S C Y LIR
Sbjct: 585 PPAILKP---VCLWTGKQIFSLIMRPSRSSPVMACLRAKGKSYTSGEEMCVNDAYVLIRN 641
Query: 569 SDILGFDLGRDVL-PAVINEIAASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHD 627
S++L + + + N I + G Q A + L I + GFS+G+ D
Sbjct: 642 SELLSGTMDKGTMGSGSKNNIFYILLRDYGDQYAADAMWRLVRLTAYYIQNRGFSIGIGD 701
Query: 628 FS----ISGAVKRITDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQDIELPAIKFAS--- 680
+ + A + + + + QL+ +L AQ + +E +K S
Sbjct: 702 VTPGAGLIKAKQDLVSAGYARCEEYIQQLKC--GKLQAQPGCNEEETLEAVCLKELSVVR 759
Query: 681 ------------KSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVAS 728
K++ M SK + ++Q I +GQQ + G G +
Sbjct: 760 DHAGKACLRELHKTNSPLIMAVCGSKGSFINISQMIACVGQQA-ISGHRVPNGFEDRSLP 818
Query: 729 HFKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFK 788
HF+ D P A G ++ F+ GL P E H++ RE +V ++ +E G + +
Sbjct: 819 HFE-----KHDRSPQAR-GFVEDSFYSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQR 872
Query: 789 NLMAILRDVVVCYDGTVRNVCSNSIIQFEYGLKAGDNAS 827
L+ L D+ YD +VRN C ++QF YG D AS
Sbjct: 873 RLVKSLEDLCCHYDRSVRNSC-GEVVQFCYGADGLDPAS 910
>Q9C428_9FUNG (tr|Q9C428) DNA-directed RNA polymerase (Fragment) OS=Monoblepharis
macrandra GN=RPB1 PE=3 SV=1
Length = 1603
Score = 179 bits (454), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 146/551 (26%), Positives = 241/551 (43%), Gaps = 57/551 (10%)
Query: 314 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLV-- 371
+++ + K FS+R+VITGD I+EVG+P I + +TF E VN +N +LQKLV
Sbjct: 271 RLRGNLMGKRVDFSARTVITGDPNISIDEVGVPRSICRNLTFPEIVNDYNRDHLQKLVAN 330
Query: 372 ------DENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKH 425
N + + + GS G T L G V R ++DGD + NR P+ HK
Sbjct: 331 GTNEYPGANRVIRANGDIVSLKHTAGS-GETLLNIGDRVERHLVDGDYIIFNRQPSLHKM 389
Query: 426 SLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLS 485
S+ V + T ++N + P ADFDGD ++L PQS +AE++E+ V +Q++S
Sbjct: 390 SMMGHKVRVMPFSTFRLNLSVTSPYNADFDGDEMNLHAPQSYETRAEIMEIMRVPRQIIS 449
Query: 486 -SHXXXXXXXXXXXXXXXXXXXVKKGFMDRAAANQMAMFLS---LPLPQPALLKAGSGDC 541
H ++ F+ R + M++ +P PA++K
Sbjct: 450 PKHNQPVMGIVQDTLCGIRKFTIRDNFLSRDMVMNILMWVEDWDGVIPLPAIVKPVP--- 506
Query: 542 YWTSTQILQCALP----LSFDCT------------GGRYLIRESDILGFDLGRDVLPAVI 585
WT Q++ A+P + F T + +I IL + + + +
Sbjct: 507 LWTGKQMMSLAIPDINLVGFSATHPDDEKGDMSVGDTKVIIEGGTILSGTMCKKTVGSSA 566
Query: 586 NEIAASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHDFSISGA-VKRITD---RN 641
+ ++ GP A FF+ Q + + NGFSVG+ D G ++ ITD +
Sbjct: 567 GGVIHTIMNEHGPDAAKKFFNGTQKIVNYWLLHNGFSVGIGDTIADGVTMQSITDTIKKA 626
Query: 642 IGKVSPLL-------------YQLRFIYNELVAQQLEKHMQDIELPAIKFASKSSRLGDM 688
V+ ++ +R + V + L K D A K + + M
Sbjct: 627 KADVAEIIKNAQANKLDAEPGMTVRETFESKVNKVLNKARDDAGKKAEKSLKIYNNVKQM 686
Query: 689 IDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGL 748
+ + SK + ++Q +GQQ V G+ G HF D + G
Sbjct: 687 VIAGSKGSFINISQMTACVGQQ-NVEGKRIPYGFRYRTLPHFT------KDDHSPESRGF 739
Query: 749 LKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNV 808
++ + GL P E H++ RE ++ ++ +E G + + L+ L DV+V YDGTVRN
Sbjct: 740 VENSYLRGLSPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNS 799
Query: 809 CSNSIIQFEYG 819
+ ++QF YG
Sbjct: 800 LGH-VVQFVYG 809
>A1YIA9_9ASCO (tr|A1YIA9) DNA-directed RNA polymerase (Fragment) OS=Neolecta
vitellina GN=RPB1 PE=3 SV=1
Length = 997
Score = 179 bits (454), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 202/832 (24%), Positives = 332/832 (39%), Gaps = 115/832 (13%)
Query: 74 YIELPVPIYHPSHVSELKKMLSLVCLNCLKMKKTKF-PSSSSGLAQR--------LLSPC 124
+IEL P++H ++++ K+L VC NC K+K + P + R + + C
Sbjct: 1 HIELAKPVFHSGFLTKVIKILQSVCFNCGKLKADQNDPKFIEAMRYRDPKARMNAMWNAC 60
Query: 125 -----CQE-------PNAAQVSIREVKTGDGACYLVLKVSKSKMQDGF--WRFLDKYGYR 170
C P A + I G C + +DGF W K
Sbjct: 61 KGKSVCDSGPSTEDAPEGADLGISH-----GGCG---NPQPTIRKDGFKLWGTWKKSKTD 112
Query: 171 YEVD-HTRALLPCEVMEMIKRFPLETKKKLAGKGYFPQDGY-VIKYLPVPPNCLXXXXXX 228
+ RA+ EV+ + + E +KL G + + + +I L VPP +
Sbjct: 113 QDSQPEKRAITASEVLRIFQLISDEDLQKLGLSGEYARPEWMIITVLGVPPPPVRPSISV 172
Query: 229 XXXXXXXXXXXXTFLRKLLRKVEVIRSSRSGEP-----NFES----HQVEANDLQSVVDQ 279
+ V R+ G P FES H D ++ Q
Sbjct: 173 DGSARSEDDLTYKLAEIIKANSNVRRTESEGAPAHIVTEFESLLQFHVATYMD-NNIPGQ 231
Query: 280 YLQIRGCAKPARDIETHFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKR 339
I+ +P + I K +++ + K FS+R+VITGD
Sbjct: 232 PQAIQKSGRPVKAIRARL-----------KGKEGRLRGNLMGKRVDFSARTVITGDPNLS 280
Query: 340 INEVGIPHEIAQRITFEERVNSHNMCYLQKLV----DENLCLAY--KEGVSTYSLREGSK 393
++EVG+P IA+ +T+ E V S+N+ LQ+LV +E+ Y ++ LR +
Sbjct: 281 LDEVGVPRSIAKTLTYPETVTSYNIHKLQELVRNGPNEHPGAKYIIRDTGERIDLRYHKR 340
Query: 394 -GHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGA 452
G L+ G V R I+DGD++ NR P+ HK S+ + + T ++N + P A
Sbjct: 341 AGEIPLQYGWRVERHIVDGDVIIFNRQPSLHKMSMMGHRIRVMPYSTFRLNLSVTSPYNA 400
Query: 453 DFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKKGFM 512
DFDGD ++L PQS +AE+ E+ V +Q++S K+
Sbjct: 401 DFDGDEMNLHVPQSEETRAEISEICMVPRQIVSPQGNKPVMGIVQDTLCAIRKFTKR--- 457
Query: 513 DRAAANQMAMFLSL-------PLPQPALLKAGSGDCYWTSTQILQCALPLSFDCTGGR-- 563
D A M M + + +P PA++K W+ QIL +P + T
Sbjct: 458 DSFLAQDMVMNILMWVPEWDGTVPMPAIIKPKP---LWSGKQILSMVIPRGINITRNDED 514
Query: 564 ----------YLIRESDILGFDLGRDVLPAVINEIAASVFFGKGPQEALNFFDVLQPFLM 613
I +I+ + + + + + + KGP+ FF+ +Q +
Sbjct: 515 QTHNPPDDRGMKIENGEIIYGVVDKKTVGSTPGGLIHIIMQEKGPEVCKGFFNGVQLVVN 574
Query: 614 ECIFSNGFSVGLHDFSISGA-------------------VKRITDRNIGKVSPLLYQLRF 654
NGFS+G+ D +I+ A V R N + SP + LR
Sbjct: 575 YWFLHNGFSIGIGD-TIADAHIMDIIQEKITEARAKVIEVTRKAQNNTLEPSPGM-TLRE 632
Query: 655 IYNELVAQQLEKHMQDIELPAIKFASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVR 714
+ V Q L + A K +S+ + M+ + SK + ++Q +GQQ V
Sbjct: 633 TFESQVRQALNNARDEAGRSAEKGLKESNNVKQMVSAGSKGSFINISQMSACVGQQA-VE 691
Query: 715 GRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMV 774
G+ + G HF D Y G ++ + GL P E H+++ RE ++
Sbjct: 692 GQRIAFGFKFRTLPHFVR------DDYSPESRGFVENSYLRGLTPQEFFFHAMAGREGLI 745
Query: 775 RSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGLKAGDNA 826
++ +E G + + L+ L DV+V YDGTVRN + I+Q YG D A
Sbjct: 746 DTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGD-IVQLAYGEDGLDGA 796
>L7M992_9ACAR (tr|L7M992) DNA-directed RNA polymerase OS=Rhipicephalus pulchellus
PE=2 SV=1
Length = 1390
Score = 179 bits (454), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 213/879 (24%), Positives = 362/879 (41%), Gaps = 127/879 (14%)
Query: 48 LGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKM--- 104
LG + +CE+CG C GHFG + L +P++H + + +L VC C ++
Sbjct: 60 LGTSQKDKKCETCGKGLT-DCVGHFGQVSLGMPVFHVGYFKAVYNILHTVCKMCARVMLP 118
Query: 105 --KKTKF------PSSS----SGLAQRLLSPCCQEPNAAQVSIR--EVKTGDGACYLVLK 150
++ +F PS+S L ++++ C ++ + + +VK ++ +
Sbjct: 119 PPERARFLDMVQRPSTSFLTKKSLHKKIVEICRKQASCPFCGVVNGQVKKCGLLKFVYER 178
Query: 151 VSKSKMQDGFWRFL-DKY----GYRYEVDH------TRALLPCEVMEMIKRFPLETKKKL 199
K +G + L D Y Y E+D + L P V ++++R P E L
Sbjct: 179 YKAHKKNEGVIKDLQDDYQEARSYNNEIDSVINKVTSDILNPLVVRDLLRRIPDEDVPLL 238
Query: 200 A--GKGYFPQDGYVIKYLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEVIRSSR 257
+ P+D V+ ++PVPP C+ L +++ +V+
Sbjct: 239 LMNTRCGRPED-LVLTHIPVPPLCIRPSVVSALKAGTNEDDVTVKLTEIIFLNDVL---- 293
Query: 258 SGEPNFESHQVEANDLQSVVDQ--YLQIRGCAKPARDIETHFGVNKELSDASNKAWLDKM 315
+ H+ + +++ +LQ++ CA + +N + + ++ ++
Sbjct: 294 ------QKHRTNGGKMSMIMEDWDFLQLQ-CALYVNSETSGIPLNMQ-PKKPTRGFVQRL 345
Query: 316 KS---LFISKGSG----FSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQ 368
K F SG FS R+VI+ D RI+EVG+P +A+ +T+ ERV HN+ ++
Sbjct: 346 KGKHGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVGVPEHVAKILTYPERVTQHNIELMR 405
Query: 369 KLVDE--------NLCLAYKEGVSTYSLREGSKGHT--YLKPGQIVHRRIMDGDIVFINR 418
+L+ N G+ Y LR G++ L+ G +V R + DGD+V NR
Sbjct: 406 QLIRNGCDVHPGANFLECRGTGIKRY-LRYGNREQLAQQLRLGDMVERHLKDGDVVLFNR 464
Query: 419 PPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFS 478
P+ HK S+ A V + T + N +C P ADFDGD ++L PQ+ A+AE + L
Sbjct: 465 QPSLHKLSIMAHVAKVLPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEARAEALILMG 524
Query: 479 VEKQLLSSHXXXXXXXXXXXXXXXXXXXVKKG-FMDRAAANQMA--MF------LSLPLP 529
L++ +K F+DR A Q+A M + + LP
Sbjct: 525 TRANLVTPRNGEPLIAAIQDFITGGYLITQKDVFLDRIKACQLASCMLAGKDTNMKVELP 584
Query: 530 QPALLKAGSGDCYWTSTQILQCALPLSFD--------------------CTGGRY-LIRE 568
PA+LK C WT QI + S C Y LIR
Sbjct: 585 PPAILKP---VCLWTGKQIFSLIMRPSRSSPVMACLRAKGKSYTSGEEMCVNDAYVLIRN 641
Query: 569 SDILGFDLGRDVL-PAVINEIAASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHD 627
S++L + + + N I + G Q A + L I + GFS+G+ D
Sbjct: 642 SELLSGTMDKGTMGSGSKNNIFYILLRDYGDQYAADAMWRLVRLTAYYIQNRGFSIGIGD 701
Query: 628 FS----ISGAVKRITDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQDIELPAIKFAS--- 680
+ + A + + + + QL+ +L AQ + +E +K S
Sbjct: 702 VTPGAGLIKAKQDLVSAGYARCEEYIQQLKC--GKLQAQPGCNEEETLEAVCLKELSVVR 759
Query: 681 ------------KSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVAS 728
K++ M SK + ++Q I +GQQ + G G +
Sbjct: 760 DHAGKACLRELHKTNSPLIMAVCGSKGSFINISQMIACVGQQA-ISGHRVPNGFEDRSLP 818
Query: 729 HFKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFK 788
HF+ D P A G ++ F+ GL P E H++ RE +V ++ +E G + +
Sbjct: 819 HFE-----KHDRSPQAR-GFVEDSFYSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQR 872
Query: 789 NLMAILRDVVVCYDGTVRNVCSNSIIQFEYGLKAGDNAS 827
L+ L D+ YD +VRN C ++QF YG D AS
Sbjct: 873 RLVKSLEDLCCHYDRSVRNSCG-EVVQFCYGADGLDPAS 910
>N1JNX2_ERYGR (tr|N1JNX2) DNA-directed RNA polymerase III subunit RPC1
OS=Blumeria graminis f. sp. hordei DH14
GN=BGHDH14_bgh01892 PE=4 SV=1
Length = 1464
Score = 179 bits (454), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 210/884 (23%), Positives = 358/884 (40%), Gaps = 143/884 (16%)
Query: 45 NPFLGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLK- 103
+P +G + G C++CG C GHFG+ L +P +H ++ ++ ML +C +C +
Sbjct: 63 DPLMGTSSKTGTCDTCGEG-LQTCNGHFGHCRLALPCFHIGYLKLIQMMLQNICKDCARV 121
Query: 104 ----------MKKTKFPS----SSSGLAQRLLSPCCQE---PNAAQVSIREVKTGDGACY 146
+K+ + P + + +++ C + P+ +V+ + K G
Sbjct: 122 LLNDTERRSFLKELRRPGIDNLKRTQICKKINLQCRKAKHCPSCGEVNGQIRKIG----- 176
Query: 147 LVLKVSKSKMQ-------------DGFWRFLDKYGY----RYEVDH--TRALLPCEVMEM 187
VLK+ K Q G F + E+D +A+ + +
Sbjct: 177 -VLKLVHDKYQAFNKSTAAKKVPPPGLINFQKSFDEAKKNNNELDKHVKKAMEDLNPLRV 235
Query: 188 IKRFPLETKKKLAGKGYFPQDG----YVIKYLPVPPNCLXXXXXXXXXXXXXXXXXXTFL 243
+ F + T P +G ++ +Y+P PP C+ T L
Sbjct: 236 LNLFKMITPPDCELLNINPAEGRPEMFLWQYVPAPPICIRPSVAQENASTEDDLT--TKL 293
Query: 244 RKLLRKVEVIRSS-RSGEPNFESHQVEANDLQSVVDQ--YLQIRGCAKPARDI----ETH 296
++ +IR++ + G+P +Q++V+Q YLQ++ D+ +
Sbjct: 294 ADIVHISSLIRAALQKGQP-----------IQTIVEQWDYLQLQIAMYVNSDVPGLQQPG 342
Query: 297 FGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFE 356
FG K + + K FS R+VI+ D I++V +P +A+ +T+
Sbjct: 343 FGKPIRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLGIDQVAVPILVAKNLTYP 402
Query: 357 ERVNSHNMCYLQKLV--DENLC-----LAYKEGVSTYSLREGSKGH--TYLKPGQIVHRR 407
ERV N+ L+K V N+ + K+ SL+ + + +LK G +V R
Sbjct: 403 ERVQRQNIEKLRKCVINGPNIHPGAQQIIKKDSDHKISLKFARRENEAKFLKIGDVVERH 462
Query: 408 IMDGDIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSL 467
+ DGDIV NR P+ HK S+ + V + T ++N +C P ADFDGD ++L PQ+
Sbjct: 463 LEDGDIVLFNRQPSLHKLSIMSHYVKVRPWRTFRLNECVCNPYNADFDGDEMNLHVPQTE 522
Query: 468 AAKAEVVELFSVEKQLLS-SHXXXXXXXXXXXXXXXXXXXVKKGFMDRAAANQMAMFL-- 524
A+AE + L V+ L + + K+ F DR + M++
Sbjct: 523 EARAEAINLMGVKNNLSTPKNGEPIISATQDFITAAYLLSSKENFFDRKTFTNLCMYMVD 582
Query: 525 ---SLPLPQPALLKAGSGDCYWTSTQILQCAL------PLS------------------- 556
L LP PA++K + WT Q+ + P+
Sbjct: 583 ANVHLDLPYPAIIKP---EALWTGKQVFSVLMRPNKDSPVKVNLDAKCRDYKAKAGQCPD 639
Query: 557 FDCTGGRYLIRESDILGFDLGRDVLPAVINEIAASVFF----GKGPQEALNFFDVLQPFL 612
D G ++R S+++ GR V + S+F+ GP EA+ + L
Sbjct: 640 MDPNDGWLVVRNSEVM---CGRMDKTTVGSGKKDSIFYIILRDFGPDEAVTAMNRLAKIS 696
Query: 613 MECIFSNGFSVGLHDFSISGAVKRITDRNIGKVSPLLYQLRFIYNE-------------- 658
+ + GFS+G+ D S +K + K +L + E
Sbjct: 697 ARYLTNQGFSIGISDVYPSQKLKAKKQALVTKAYEECEKLIMTFKEGKLEKATGCNMEET 756
Query: 659 ---LVAQQLEKHMQDIELPAIKFASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRG 715
++ L K Q I+ SK + M S SK + V Q + +GQQ+ + G
Sbjct: 757 LENAISGILSKVRQQAGEYCIETLSKWNAPLIMAKSGSKGSNINVAQMVAVVGQQI-IGG 815
Query: 716 RLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVR 775
+ G + HF + PS G ++ FF GL P E L H+IS RE +V
Sbjct: 816 QRVPDGFQDRSLPHFP----KNARQPPSK--GFVRNSFFSGLTPTEFLFHAISGREGLVD 869
Query: 776 SSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 819
++ +E G + + LM L D+ YD TVRN S I+QF++G
Sbjct: 870 TAVKTAETGYMSRRLMKSLEDLSTQYDDTVRN-SSGIIVQFQFG 912
>Q5I2R7_9HOMO (tr|Q5I2R7) DNA-directed RNA polymerase (Fragment)
OS=Hygrophoropsis aurantiaca GN=RPB1 PE=3 SV=2
Length = 991
Score = 179 bits (454), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 145/554 (26%), Positives = 250/554 (45%), Gaps = 54/554 (9%)
Query: 314 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLVDE 373
+++ + K FS+R+VITGD +++EVG+P IA +T+ ERV +N+ YLQ+LV
Sbjct: 253 RLRGNLMGKRVDFSARTVITGDPNLQLDEVGVPRSIAMNLTYPERVTPYNIAYLQELV-R 311
Query: 374 NLCLAY-------KEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHS 426
N AY ++ LR + +L+ G IV R + DGD V NR P+ HK S
Sbjct: 312 NGPTAYPGARYVVRDTGERIDLRYNKRADAFLQYGWIVERHLKDGDFVLFNRQPSLHKMS 371
Query: 427 LQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSS 486
+ + V + T ++N + P ADFDGD +++ PQS +AE+ ++ V +Q++S
Sbjct: 372 MMSHRVKLMPYSTFRLNLSVTPPYNADFDGDEMNMHIPQSEETRAELSQIAWVPRQIISP 431
Query: 487 HXXXXXXXXXXXXX-XXXXXXVKKGFMDRAAANQMAMFL---SLPLPQPALLKAGSGDCY 542
H ++ F+D + +++ +P PA++K
Sbjct: 432 HANKPVMGIVQDTLCGIRKFTLRDTFLDWNQVQNILLWVPDWDGAVPTPAIIKPKP---L 488
Query: 543 WTSTQILQCALPLSFDCTGGR------------YLIRESDILGFDLGRDVLPAVINEIAA 590
WT QIL +P + +I +I+ + + + A +
Sbjct: 489 WTGKQILSLVIPRGINIHRAPDPKSSNPVFDDGMMIENGEIVFGIVEKKTVGASQGGLIH 548
Query: 591 SVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHDFSISGA------VKRITDR--NI 642
VF KGP+ + F +Q + +F NGFS+G+ D +I+G + I DR +
Sbjct: 549 VVFREKGPEATRDLFTGIQMVVNFWLFHNGFSIGIGD-AIAGPNVMSFITQEINDRKQQV 607
Query: 643 GKVSPLLYQLRF------IYNELVAQQLEKHMQDIELPAIKFASKSSR----LGDMIDSK 692
+ Y R E ++E+ + + ++A ++ + + M+ +
Sbjct: 608 TTIIEDAYHDRLKAMPGMTIRESFESKVERELNRARDTSGRYAQENLKEDNNVKQMVVAG 667
Query: 693 SKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGC 752
SK + ++Q +GQQ V GR G HF D + G ++
Sbjct: 668 SKGSYINISQMSVCVGQQ-SVEGRRIPFGFRHRTLPHFT------KDDFSPEARGFVENS 720
Query: 753 FFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNS 812
+ GL P E H+++ RE ++ ++ +E G + + L+ L DV+VCYDGTVRN +
Sbjct: 721 YLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMVCYDGTVRNSLGD- 779
Query: 813 IIQFEYGLKAGDNA 826
++QF G D A
Sbjct: 780 LLQFVCGEDGMDGA 793
>H3G223_PRIPA (tr|H3G223) DNA-directed RNA polymerase OS=Pristionchus pacificus
GN=WBGene00118187 PE=3 SV=1
Length = 1699
Score = 179 bits (453), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 209/889 (23%), Positives = 340/889 (38%), Gaps = 108/889 (12%)
Query: 17 IQFGMATRQEICTXXXXXXXXXXXXXXXNPFLGLPLE--------YGRCESCGTSEAGKC 68
+QFG+ + EI P LG ++ GRC +C + A C
Sbjct: 18 VQFGILSPDEIKRMSVASIEYAEVYENGKPKLGGLMDPRQGVIDRKGRCMTCAGNLA-DC 76
Query: 69 EGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKMKKTKFPSSSSGLAQRLLSPCCQEP 128
GHF ++EL P++H +++ K+L VC C K+ K +G + +L P
Sbjct: 77 PGHFAHMELAKPVFHIGFLTKSLKLLRCVCFYCSKLMLDK----DNGRVKEILKKTTTNP 132
Query: 129 NAAQVSIREVKTGDGAC-----------YLVLKVSKSKMQDGFWRFLDKYGYRYEVDHT- 176
I ++ G C G R+ Y R ++ T
Sbjct: 133 RKRLTMIYDICKGKSVCEGGKEASGENGEEGEGGENEHKSGGCGRYQPTY-RRVGIEMTA 191
Query: 177 -------------RALLPCE-VMEMIKRFPLETKKKLAGKGYFPQDGYVI-KYLPVPPNC 221
+ +L E +E+ ++ E K L F + ++I LPVPP
Sbjct: 192 EWKKNVNEDTQERKIMLTAERALEIFRQVSDEDCKILGLDPRFARPDWMICTVLPVPPLA 251
Query: 222 LXXXXXXXXXXXXXXXXXXTFLRKLLRKVEVIRSSRSGEPNFESHQVEANDLQSVVDQYL 281
+ KL V+ + E N + V A+D++ +
Sbjct: 252 VRPAVVTFGSAKNQDD----LTHKLSDIVKTNIQLKRNEANGAAAHVIADDVKLLQYHVA 307
Query: 282 QIRGCAKPARDIETHFGVNKELSDASN--KAWLDKMKSLFISKGSGFSSRSVITGDGYKR 339
+ P T G + L K +++ + K FS+R+VIT D
Sbjct: 308 TLVDNCIPGIPTATQKG-GRPLKSVKQRLKGKEGRIRGNLMGKRVDFSARTVITPDPNLP 366
Query: 340 INEVGIPHEIAQRITFEERVNSHNMCYLQKLVDEN------LCLAYKEGVSTYSLREGSK 393
++ VG+P IAQ +TF E V N+ LQ+LV+ +E + LR +
Sbjct: 367 LDTVGVPRTIAQNLTFPEIVTPFNIDKLQELVNRGDSQYPGAKYIVRENGARVDLRYHPR 426
Query: 394 G-HTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGA 452
+L+PG V R + DGDI+ NR PT HK S+ V + T ++N + P A
Sbjct: 427 AADLHLQPGYRVERHMRDGDIIVFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSVTTPYNA 486
Query: 453 DFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKKG-F 511
DFDGD ++L PQSL +AE+ E+ V +QL++ K+ F
Sbjct: 487 DFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDVF 546
Query: 512 MDRAAANQMAMFLSL---PLPQPALLKAGSGDCYWTSTQILQCALPLSFDCT-------- 560
+D + M+L +PQPA+LK WT Q+ +P S +
Sbjct: 547 IDFHRMMDLLMYLPSWDGKIPQPAILKPKP---LWTGKQVFSLIIPGSVNVLRTHSTHPD 603
Query: 561 ---GGRY----------LIRESDILGFDLGRDVLPAVINEIAASVFFGKGPQEALNFFDV 607
G Y +I ++L + + + V G + A +F+
Sbjct: 604 EEDSGPYKWISPGDTKVIIEHGELLSGIICAKTVGKSAGNLIHVVVMELGHEVAAHFYSH 663
Query: 608 LQPFLMECIFSNGFSVGLHDFSISGAVKRITDRNIGKVSPLLY----------------- 650
+Q + + G ++G+ D + R I K +
Sbjct: 664 IQTVVNAWLLQEGHTIGIGDTIADQSTYRDIQETIKKAKQDVVDVIEKAHNDELEPTPGN 723
Query: 651 QLRFIYNELVAQQLEKHMQDIELPAIKFASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQ 710
LR + V + L A K S+ + M+ S SK + ++Q I +GQQ
Sbjct: 724 SLRQTFENRVNRILNDARDRTGSSAQKSLSEFNNFKAMVVSGSKGSKINISQVIACVGQQ 783
Query: 711 LFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTR 770
V G+ G HF +K DY P ++ G ++ + GL P E H++ R
Sbjct: 784 -NVEGKRIPFGFRHRTLPHF-IKDDYG----PESK-GFVENSYLAGLTPAEFFFHAMGGR 836
Query: 771 EIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 819
E ++ ++ +E G + + L+ + V+VCYDGTVRN +IQ YG
Sbjct: 837 EGLIDTAVKTAETGYIQRRLIKAMESVMVCYDGTVRNSL-QQMIQLRYG 884
>A5H293_9LECA (tr|A5H293) DNA-directed RNA polymerase (Fragment) OS=Degelia
plumbea GN=RPB1 PE=3 SV=1
Length = 1002
Score = 179 bits (453), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 160/602 (26%), Positives = 267/602 (44%), Gaps = 65/602 (10%)
Query: 314 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLV-- 371
+++ + K FS+R+VITGD ++EVG+P IA+ +T+ E V +N+ L +LV
Sbjct: 270 RLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKN 329
Query: 372 --DENLCLAY--KEGVSTYSLREGSK-GHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHS 426
+E+ Y +E LR + G L+ G V R I+DGD + NR P+ HK S
Sbjct: 330 GPNEHPGAKYVIRESGERIDLRHHKRAGEISLQYGWKVERHIIDGDFIIFNRQPSLHKES 389
Query: 427 LQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSS 486
+ V + T ++N + P ADFDGD ++L PQS +AE+ +L V ++S
Sbjct: 390 MMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCMVPLNIVSP 449
Query: 487 HXXXXXXXXXXXXXXXXXXXVKKG-FMDRAAANQMAMFLSLP-----LPQPALLKAGSGD 540
++ F+ + M + L +P LPQPA+LK
Sbjct: 450 QRNGPLMGIVQDTLCGIYKLCRRDVFLSKEQV--MNILLWIPDWDGILPQPAILKPRP-- 505
Query: 541 CYWTSTQILQCALPLSFDCT--GGR---------YLIRESDILGFDLGRDVLPAVINEIA 589
WT QI+ +P + T GG L+ ++ L + + A + I
Sbjct: 506 -KWTGKQIISLVIPSGLNLTRAGGEGFSPLNDDGLLVSGGKLMYGLLSKKSVGATSSGII 564
Query: 590 ASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHD-FSISGAVKRITD--------- 639
+F KGP+ A+ FF+ Q + + NGFS+G+ D G +K+I D
Sbjct: 565 HIIFNEKGPEVAMKFFNGAQTVVNYWLLHNGFSIGIGDTIPDRGTIKQIKDAVNKQKEDV 624
Query: 640 ------RNIGKVSPLL-YQLRFIYNELVAQQLEKHMQDIELPAIKFASKSSRLGDMIDSK 692
++ PL +R + V++ L K D K + M S
Sbjct: 625 AVITQSATANELEPLPGMNVRETFESKVSKALNKARDDAGTVTEKSLKDLNNATQMALSG 684
Query: 693 SKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGC 752
SK + ++Q +GQQ V G+ G HF D Y G ++
Sbjct: 685 SKGSTINISQMTAVVGQQ-SVEGKRIPFGFKYRTLPHFT------KDDYSPESRGFVENS 737
Query: 753 FFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNS 812
+ GL P E H+++ RE ++ ++ +E G + + L+ L DV+ YDGTVRN +
Sbjct: 738 YLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMAKYDGTVRNSLGD- 796
Query: 813 IIQFEYGLKAGDNASYLFPAGEHVGVLAATAMSNPAYKA-----VLDASPSSNCSWELMK 867
I+QF YG + G +A ++ + V ++ S+ +K ++D P ++ S E ++
Sbjct: 797 IVQFVYG-EDGLDAVHI--ESQRVDIITC---SDEQFKKKFRVDLMDPRPETSISSEFLE 850
Query: 868 EI 869
++
Sbjct: 851 QV 852
>Q8ISB0_TRYCR (tr|Q8ISB0) DNA-directed RNA polymerase OS=Trypanosoma cruzi
GN=RPIIls PE=3 SV=1
Length = 1731
Score = 179 bits (453), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 153/562 (27%), Positives = 237/562 (42%), Gaps = 50/562 (8%)
Query: 309 KAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQ 368
K +++ + K FS+R+VITGD ++EVG+P IA +TF ERV++ N L
Sbjct: 321 KGKYGRLRGNLMGKRVDFSARTVITGDPNIDVDEVGVPFSIAMTLTFPERVSAVNKKRLT 380
Query: 369 KLVDENLC-----LAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTH 423
+ V + + + G ST + L G +V R +++GD+V NR PT H
Sbjct: 381 EFVRRPVYPSAFYIHHPNGTSTKLALRRDRSKVTLNIGDVVERHVINGDVVLFNRQPTLH 440
Query: 424 KHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQL 483
+ S+ V + + +T ++N P ADFDGD ++L PQSL KAE++E+ V K
Sbjct: 441 RMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNF 500
Query: 484 LSSHXXXXXXXXXXXXXXXXXXXV-KKGFMDRAAANQMAMFLSL-PLPQPALLKAGSGDC 541
+S + K F+D+ +A++L L LP PA+LK
Sbjct: 501 VSPNKSAPCMGIVQDSLLGSYRLTDKDTFLDKYFVQSVALWLDLWQLPVPAVLKPRP--- 557
Query: 542 YWTSTQILQCALP-----------LSFDCTGGRYLIRESDILGFDLGRDVLPAVINEIAA 590
WT Q+ LP F +IR +L + + ++ A +
Sbjct: 558 LWTGKQVFSLILPEVNHPATPQERPPFPHNDSSIMIRRGQLLCGPITKGIVGAAPGSLIH 617
Query: 591 SVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHDFSISGAVKR-------ITDRNIG 643
+F +G E F + +Q + + GFSVG+ D R T N+
Sbjct: 618 VIFNERGSDEVARFINGVQRITTFFLINFGFSVGVQDTVADADTLRQMNEVLVKTRENVE 677
Query: 644 KVSPLL----------YQLRFIYNELVAQQLEKHMQDIELPAIKFASKSSRLGDMIDSKS 693
K+ L + V L K ++ A+ +++ MI++ S
Sbjct: 678 KIGAAANNRTLNRKAGMTLLQSFEADVNSALNKCREEAAKKALSNVRRTNSFKVMIEAGS 737
Query: 694 KSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGCF 753
K + Q F+GQQ V G G HF L D Y G+ +
Sbjct: 738 KGTDLNICQIAVFVGQQ-NVAGSRIPFGFRRRTLPHFML------DDYGETSRGMANRGY 790
Query: 754 FHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSI 813
GL P E H+++ RE ++ ++ S+ G L + L+ L DV YDGTVRN + +
Sbjct: 791 VEGLKPHEFFFHTMAGREGLIDTAVKTSDTGYLQRKLIKALEDVHAAYDGTVRN-ANQEL 849
Query: 814 IQFEYGLKAGDNASY----LFP 831
IQF YG D A LFP
Sbjct: 850 IQFMYGEDGLDGARIEGGQLFP 871
>G0ULQ7_TRYCI (tr|G0ULQ7) DNA-directed RNA polymerase OS=Trypanosoma congolense
(strain IL3000) GN=TCIL3000_4_4270 PE=3 SV=1
Length = 1756
Score = 179 bits (453), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 156/564 (27%), Positives = 246/564 (43%), Gaps = 54/564 (9%)
Query: 309 KAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQ 368
K +++ + K FS+R+VITGD ++EVG+P +A +TF ERVN+ N L
Sbjct: 338 KGKYGRLRGNLMGKRVDFSARTVITGDPNIDVDEVGVPFSVAMTLTFPERVNTVNKKRLT 397
Query: 369 KLVDENLC-----LAYKEGVST--YSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPT 421
+ V + + + G T LR+ SK L G IV R +++GD+V NR PT
Sbjct: 398 EFVRREVYPSANYIHHPNGTITKLALLRDRSK--VTLNIGDIVERHVINGDVVLFNRQPT 455
Query: 422 THKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEK 481
H+ S+ V + + +T ++N P ADFDGD ++L PQSL KAE++E+ V K
Sbjct: 456 LHRMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPK 515
Query: 482 QLLSSHXXXXXXXXXXXXXXXXXXXVKK-GFMDRAAANQMAMFLSL-PLPQPALLKAGSG 539
+S + K F+D+ +A++L L LP PA+LK
Sbjct: 516 NFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFLDKYFVQSVALWLDLWQLPIPAVLKPRP- 574
Query: 540 DCYWTSTQILQCALP-----------LSFDCTGGRYLIRESDILGFDLGRDVLPAVINEI 588
WT Q+ LP F +IR ++L + + ++ A +
Sbjct: 575 --LWTGKQVFSLILPEVNHPTTPHDKPPFPHNDSSVMIRRGELLCGPITKGIVGAAPGSL 632
Query: 589 AASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHD-FSISGAVKRI------TDRN 641
+F +G E F + +Q + + GFSVG+ D + + ++++ T N
Sbjct: 633 IHVIFNEQGSDEVARFINGVQRVTTFFLLNFGFSVGVQDTVADTDTLRQMNEVLVKTREN 692
Query: 642 IGKVSPLL----------YQLRFIYNELVAQQLEKHMQDIELPAIKFASKSSRLGDMIDS 691
+ K+ L + V L K ++ A+ +++ MI++
Sbjct: 693 VEKIGAAANNRTLNRKAGMTLLQSFEADVNSALNKCREEAAKKALSNVRRTNSFKVMIEA 752
Query: 692 KSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKG 751
SK + Q F+GQQ V G G HF L D Y G+
Sbjct: 753 GSKGTDLNICQIAVFVGQQ-NVAGSRIPFGFRRRTLPHFML------DDYGETSRGMANR 805
Query: 752 CFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSN 811
+ GL P E H+++ RE ++ ++ S+ G L + L+ L DV YDGTVRN +
Sbjct: 806 GYVEGLKPHEFFFHTMAGREGLIDTAVKTSDTGYLQRKLIKALEDVHAAYDGTVRN-ANE 864
Query: 812 SIIQFEYGLKAGDNASY----LFP 831
+IQF YG D A LFP
Sbjct: 865 ELIQFMYGEDGLDGARIEGGQLFP 888
>J9IL94_9SPIT (tr|J9IL94) DNA-directed RNA polymerase OS=Oxytricha trifallax
GN=OXYTRI_06457 PE=3 SV=1
Length = 1886
Score = 179 bits (453), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 208/850 (24%), Positives = 350/850 (41%), Gaps = 110/850 (12%)
Query: 57 CESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKMKKTKFPSSSSGL 116
C +C S+ C GHFG+IEL P+YH + +KK+L +C +C K+ +P +
Sbjct: 70 CFTCKGSQV-DCPGHFGHIELAKPVYHRGCLEYIKKILKCLCFSCGKLL---YPREKDHV 125
Query: 117 AQ--RLLSPCCQ----EPNAAQVSIREVKTGDGACYL----VLKVSKSKMQDGF---WRF 163
Q R+ SP + + + R ++ +G C + VLK S + + F +
Sbjct: 126 DQIMRIKSPKHRFMQIMKHHEKYVFRYCESQNGGCGMKQPKVLKKSLALEVEYFSDNQHY 185
Query: 164 LDKYGYRYEVDHTRALLPCEVMEMIKRFPLETKKKLAGKGYFPQDGYVIKYLPVPPNCLX 223
+ GY V+ + P EV + + E + L K PQ+ +IK L V P +
Sbjct: 186 MQNLGYN-SVEQKAFIWPEEVQRIFSKMTTEEQNLLGIKK--PQN-MIIKRLIVCPPPVR 241
Query: 224 XXXXXXXXXXXXXXXXXTFLRKLLRKVEVIRSSRSGEPNFESHQVEANDLQSVVDQYLQI 283
++ + L+ + R G ++ N L+ + Y+ +
Sbjct: 242 PSVSMGGPFKCEDDLTYSYQKILVTNNVLARDMDKG-----ANLTTLNKLREQLQFYVAV 296
Query: 284 RGCAKPARDIETH---FGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRI 340
I TH G + A + +++ + K FS+RSVIT D +
Sbjct: 297 L-MDNECPGIPTHKHKSGKPLKAIRARLRGKEGRVRGNLMGKRVDFSARSVITPDPNLEL 355
Query: 341 NEVGIPHEIAQRITFEERVNSHNMCYLQKLVDENLCLAYKEGVSTYSLRE---------- 390
+++G+P IAQ +T E V N+ L++LV+ ++ + Y +R
Sbjct: 356 DQLGVPMAIAQNVTIPEVVTPQNIDELRRLVENG---PHRYPGAKYIIRHDERQIDIGIL 412
Query: 391 GSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPL 450
+ +L+ G V R + + D V NR P+ HK S+ I T ++N + P
Sbjct: 413 NERSDVHLEYGYKVERHLRNDDYVLFNRQPSLHKMSIMGHRAKILPFSTFRLNLSVTSPY 472
Query: 451 GADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKK- 509
ADFDGD +++F PQS + AEV E+ +V Q++S +K
Sbjct: 473 NADFDGDEMNMFVPQSYESMAEVKEIMAVPNQIISPQSNKPVMGIVQDSLLGIMLFTRKD 532
Query: 510 GFMDRAAANQMAMFLS----LPLPQPALLKAGSGDCYWTSTQILQCALPLSFDCTGGRY- 564
F+DR A + M+L LP PA+LK WT QIL +P D ++
Sbjct: 533 NFIDRNTAMNLMMWLGKYSDKVLPTPAVLKPKP---LWTGKQILSLVIP---DVNLTKFF 586
Query: 565 --------------------LIRESDILGFDLGRDVLPAVINEIAASVFFGKGPQEALNF 604
LI+ ++ L + + + ++ GP A F
Sbjct: 587 EAPPKPPQRRNWCPTQETIVLIQRGQLITGHLNKATAGSSSQGLIHIIWKECGPDGAKQF 646
Query: 605 FDVLQPFLMECIFSNGFSVGLHDF-----SISGAVKRITDRNIGKVSPLLYQ-------- 651
Q + + + +GF+VG+ D ++ G +++ N KV+ L+ +
Sbjct: 647 LSNAQNVVNQWLIEHGFTVGVQDTIASKKTMDGIHQKLQHYN-NKVARLIQKAEQGKLTT 705
Query: 652 -----LRFIYNELVAQQLEKHMQDIELPAIKFASKSSRLGDMIDSKSKSALDKVTQQIGF 706
+ + LV L + + A K +++ +M+ + SK ++Q +G
Sbjct: 706 QPGKNMMESFEYLVNNNLNQARDEAGQLAFKDLDPWNKIQNMVGAGSKGTNINISQIMGC 765
Query: 707 LGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHS 766
+GQQ V G+ G HF K DY A G + + GLDP E H+
Sbjct: 766 VGQQ-NVEGKRVQFGFKSRTLPHFP-KHDYG-----PASKGFVINNYISGLDPPEFFFHA 818
Query: 767 ISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGLKAGDNA 826
+ RE ++ ++ SE G + + L+ L D++V YDGTVRN +IQF YG
Sbjct: 819 MGGREGLIDTAVKTSETGYIQRRLVKALEDIMVKYDGTVRN-SGEQVIQFLYGEDG---- 873
Query: 827 SYLFPAGEHV 836
AGEH+
Sbjct: 874 ----IAGEHI 879
>B9WF61_CANDC (tr|B9WF61) DNA-directed RNA polymerase OS=Candida dubliniensis
(strain CD36 / ATCC MYA-646 / CBS 7987 / NCPF 3949 /
NRRL Y-17841) GN=CD36_46530 PE=3 SV=1
Length = 1448
Score = 178 bits (452), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 215/878 (24%), Positives = 347/878 (39%), Gaps = 129/878 (14%)
Query: 48 LGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLK---- 103
+G+ C +C + A C GHFG+I L +P++H + + +L +C NC
Sbjct: 58 MGISSNAQECSTCHGNLAS-CHGHFGHIRLALPVFHVGYFKSIISVLQCICKNCAAVLLD 116
Query: 104 -------MKKTKFPSSSS----GLAQRLLSPC-----CQEPNAAQVSIREVKTGDGACYL 147
+ + P + + ++++ C C + N +++ +G G L
Sbjct: 117 EQSKRQYLNDLRKPHIDNLRRMKIIKKIIEQCKKQRRCLKCNHINGVVKKAASGAGPAAL 176
Query: 148 VLKVSKSKMQDGFWRFLDKYGYRYEVDHTRALLPCEVMEMIKRF-----PLETKKKLAGK 202
+ V + G L+K + E+D P E+ + KR PL+T K
Sbjct: 177 KI-VHDTFRWIGKKETLEKTIWDEELDQVFIRNP-ELEKFAKRIHDDLNPLKTLNLF--K 232
Query: 203 GYFPQD---------------GYVIKYLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLL 247
PQD Y+ +YLP PP C+ L +++
Sbjct: 233 QITPQDCELFGLDPAKGGRPEMYIWRYLPAPPVCIRPSVMMDAQSNEDDLTVK--LTEIV 290
Query: 248 RKVEVIRSSRSGEPNFESHQVEANDLQSVVDQYLQIRGCAKPARDIETHFGVNKELSDAS 307
+IR+ + + + + LQ V Y+ A PA + T G K S
Sbjct: 291 WTSSMIRAGIVKGISINNLMEQWDYLQLSVAMYIN-SDSANPA--LSTGGGGAK--SSKP 345
Query: 308 NKAWLDKMKS---LFISKGSG----FSSRSVITGDGYKRINEVGIPHEIAQRITFEERVN 360
+A+ ++K F SG FS R+VI+ D +I+EV +P +A+ +T+ E+
Sbjct: 346 IRAFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCT 405
Query: 361 SHNMCYLQKLV--------DENLCLAYKE-GVSTYSLREGSKGHTYLKPGQIVHRRIMDG 411
+N LQKL+ N + E G + K L+ G IV R I DG
Sbjct: 406 RYNKKKLQKLIVNGPDIHPGANYVMKQNEPGKRNLRFGDRVKLAKTLQIGDIVERHIEDG 465
Query: 412 DIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKA 471
D+V NR P+ H+ S+ + I T ++N +C P ADFDGD ++L PQ+ A+A
Sbjct: 466 DVVLFNRQPSLHRLSILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARA 525
Query: 472 EVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKK-GFMDRAAANQMAMFLS----- 525
E + L V+ LL+ K F DRA Q+ +S
Sbjct: 526 EAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFFDRATLVQLLSMMSDADIQ 585
Query: 526 LPLPQPALLKAGSGDCYWTSTQILQC--------------------------ALPLSFDC 559
+P P + K WT Q+ LP
Sbjct: 586 FDIPPPTIFKPV---MLWTGKQVFSLLIKPNKKSNVVINLDAKNKTFHPPKKGLPNEMSP 642
Query: 560 TGGRYLIRESDILGFDLGRDVL-PAVINEIAASVFFGKGPQEALNFFDVLQPFLMECIFS 618
G +IR S IL + + L + + ++ GP+EA + + + +
Sbjct: 643 NDGFVVIRGSKILSGLMDKSTLGDGKKHSVFYTILRDYGPEEAAAAMNRMAKLCARFLGN 702
Query: 619 NGFSVGLHDFSISGAVKRITDRNIGKVSPLLYQLRFIYN--ELVAQQLEKHMQDIELPAI 676
GFS+G++D + + +K+ + + + QL +YN +L Q Q +E
Sbjct: 703 RGFSIGINDVTPADELKQKKELMVEQAYLKCDQLIDLYNRGKLETQPGCNEEQTLEAKIG 762
Query: 677 KFASK-SSRLGD--------------MIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKG 721
SK +GD M SK + V+Q + +GQQ+ + G G
Sbjct: 763 GLLSKVREEVGDVCIRELDSLNAPLIMATCGSKGSTLNVSQMVAVVGQQI-ISGHRVPDG 821
Query: 722 LLEDVASHFKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLS 781
+ HF P ++ G ++ FF GL P E L H+IS RE +V ++ +
Sbjct: 822 FQDRSLPHFT-----KNSKTPQSK-GFVRNSFFSGLTPPEFLFHAISGREGLVDTAVKTA 875
Query: 782 EPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 819
E G + + LM L D+ YD TVRN SN I+QF YG
Sbjct: 876 ETGYMSRRLMKSLEDLSSQYDNTVRN-SSNGIVQFTYG 912
>A1YIB2_SMICU (tr|A1YIB2) DNA-directed RNA polymerase (Fragment) OS=Smittium
culisetae GN=RPB1 PE=3 SV=1
Length = 1025
Score = 178 bits (451), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 210/867 (24%), Positives = 349/867 (40%), Gaps = 155/867 (17%)
Query: 74 YIELPVPIYHPSHVSELKKMLSLVCLNC--LKMKKTKFP------SSSSGLAQRLLSPCC 125
+IEL P++HP V+++KK+L VC C LK+ +T+ +S +L+ C
Sbjct: 1 HIELARPVFHPGFVTKIKKILECVCWYCSKLKIDETEVAYQMAQKVKNSNRRLKLVWDVC 60
Query: 126 QEPNAAQVSI----REVKT-----------------------GDGAC---YLVLKVSKSK 155
+ + S+ RE+ G G C + K
Sbjct: 61 KSRMVCEASVEADEREINISRADEDLRREEVEGMLGTKRKALGHGGCGHKQPTFRKDGLK 120
Query: 156 MQDGFWRFLDKYGYRYEVDHTRALLPCEVMEMIKRFPLETKKKLAGKG--YFPQDGYVIK 213
+ F G E +L +V++++K+ +T + G Y + +I
Sbjct: 121 LTATFKGVALSGGEDTEGKQVLTVL--QVLQVLKKIS-DTDVRAIGMNPEYARPEWLIIS 177
Query: 214 YLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEVIRSSR-SGEPNFESHQVEA-- 270
+PVPP C+ L +L+ +RS G P + E
Sbjct: 178 VMPVPPMCVRPSIQMDATRHSEDDLTYK-LNDILKANARVRSCEVEGAPQHIIDEFETLL 236
Query: 271 ---------NDLQSVVDQYLQIRGCAKPARDIETHFGVNKELSDASNKAWLDKMKSLFIS 321
ND+ S + Q LQ G +P + I K +++ +
Sbjct: 237 QFHVATFINNDI-SGIPQALQKSG--RPIKSIRARL-----------KGKEGRLRGNLMG 282
Query: 322 KGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLVDENLCLAYKE 381
K FS+R+VI+GD I++VG+P IA+ +T+ E V +N+ LQ+LV +
Sbjct: 283 KRVDFSARTVISGDPNLEIDQVGVPKAIAKNLTYPEVVTPYNIDRLQELVQNG---PTEH 339
Query: 382 GVSTYSLREGSK----------GHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALV 431
+ Y +R+ + G L+ G V R +MD D+V NR P+ HK S+
Sbjct: 340 PGAKYVIRDSGERIDLKYSKRGGDIPLQIGYKVERSLMDNDVVIFNRQPSLHKMSMMGHR 399
Query: 432 VYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHXXXX 491
V + D T ++N + P ADFDGD ++L PQS +AEV EL V KQ++S
Sbjct: 400 VKVMDYSTFRLNLSVTSPYNADFDGDEMNLHLPQSEETRAEVRELCMVPKQIVSPQGNRP 459
Query: 492 XXXXXXXXXXXXXXXVKKGFMDRAAANQMAMFLSLP-----LPQPALLKAGSGDCYWTST 546
K+ + + M + L +P +P P +LK W+
Sbjct: 460 IMGIVQDTLCAMIMFTKRDNLMKQDL-VMDLLLKVPGWDGMIPPPCILKPQP---LWSGK 515
Query: 547 QILQCALPLSFDCT-----------------GGRYLIRESDILGFDLGRDVLPAVINEIA 589
Q+ +P +C R ++ +L + + + AV +
Sbjct: 516 QLYSLLIPDGINCYTFLKEHPDLETSWSSPGDTRVVVENGVLLSGIVCKQTVGAVRGGLV 575
Query: 590 ASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHDFSISGAVKRITD-RNIGKVSPL 648
++F GP+ F Q + + + +NGFS+G+ D ITD + VS +
Sbjct: 576 HTIFNELGPEATKVFLGGTQRVINQWLVTNGFSIGIGD--------TITDASTMDSVSKI 627
Query: 649 LYQLRFIYNELVAQQLEKHMQDIELPAIKF------------------ASKS--SRLGD- 687
+ + I ++++ +E M+ LP + + A KS ++L D
Sbjct: 628 ISEAHRIVDQIIKDCIEDKMKG--LPGMTYKETFENNINFELNKARENAGKSVQAQLKDC 685
Query: 688 -----MIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYP 742
M+ S SK + V+Q +GQQ V G+ G + HF D Y
Sbjct: 686 NNVRKMVVSGSKGSYINVSQMTAAVGQQ-NVEGKRIPFGFRDRTLPHFT------KDDYT 738
Query: 743 SAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYD 802
G ++ + GL P E H++ RE ++ ++ +E G + + L+ L DV+V YD
Sbjct: 739 PHSRGFVENSYLSGLTPQEFYFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMVHYD 798
Query: 803 GTVRNVCSNSIIQFEYGLKAGDNASYL 829
GTVRN +II+F YG G +AS L
Sbjct: 799 GTVRNSLG-AIIEFAYG-HDGADASLL 823
>G8YLC5_PICSO (tr|G8YLC5) DNA-directed RNA polymerase OS=Pichia sorbitophila
(strain ATCC MYA-4447 / BCRC 22081 / CBS 7064 / NBRC
10061 / NRRL Y-12695) GN=Piso0_001648 PE=3 SV=1
Length = 1454
Score = 178 bits (451), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 213/885 (24%), Positives = 350/885 (39%), Gaps = 143/885 (16%)
Query: 48 LGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLK---- 103
+G+ C +C + A C GHFG+I L +P++H + + +L +C NC
Sbjct: 58 MGISSNSSECSTCHGNLAS-CHGHFGHIRLALPVFHVGYFKNIMSVLQSICKNCGAILLD 116
Query: 104 -------MKKTKFPSSSS----GLAQRLLSPC-----CQEPNAAQVSIREVKTGDGACYL 147
+ + + P+ + + +R+L C C + N +++ +G G
Sbjct: 117 ETTRRSFLNELRRPNLDNLKRMKILKRILEQCKKQRRCVKCNHINGVVKKAASGSGPA-- 174
Query: 148 VLKV---------SKSKMQDGFWRF-----------LDKYGYRYEVDHTRALLPCEVMEM 187
LK+ K + W L+K+ R D L P +V+ +
Sbjct: 175 ALKIVHDTFRWIGKKPTPEKALWNEEFDEVFARNPELEKFSKRVYDD----LNPLKVLNL 230
Query: 188 IKRFPLETKKKLA---GKGYFPQDGYVIKYLPVPPNCLXXXXXXXXXXXXXXXXXXTFLR 244
K+ + L +G P+ Y+ +YLP PP C+ L
Sbjct: 231 FKQIEPADCELLGIDPARGGRPE-MYIWRYLPAPPVCIRPSVMMDTQSNEDDLTVK--LT 287
Query: 245 KLLRKVEVIRSSRSGEPNFESHQVEANDLQSVVDQY----------LQIRGCAKPARDIE 294
+++ +IR+ + + + LQ V Y L G +K A+ I
Sbjct: 288 EIVWTSSLIRAGIEKGITINNLMEQWDYLQLSVAMYINSDAANSAFLPSSGGSKSAKPIR 347
Query: 295 THFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRIT 354
G + L K + + K FS R+V++ D RI+EV +P +A+ +T
Sbjct: 348 ---GFCQRL-----KGKQGRFRGNLSGKRVDFSGRTVVSPDPNLRIDEVAVPDRVAKVLT 399
Query: 355 FEERVNSHNMCYLQKLV--------DENLCLAYKEGVSTYSLREGS--KGHTYLKPGQIV 404
+ E +N LQ+L+ N + E + +LR G K L G +V
Sbjct: 400 YPEMCTRYNRKKLQRLILNGPNTYPGANYLMKQNEA-AKRNLRFGDRVKLAKNLHIGDVV 458
Query: 405 HRRIMDGDIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYP 464
R I DGD+V NR P+ H+ S+ + + T ++N +C P ADFDGD ++L P
Sbjct: 459 ERHIEDGDVVLFNRQPSLHRLSILSHFAKVRPWRTFRLNECVCTPYNADFDGDEMNLHVP 518
Query: 465 QSLAAKAEVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKK-GFMDRAAANQMAMF 523
Q+ A+AE + L V+ LL+ K F DRAA QM
Sbjct: 519 QTEEARAEAMNLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFYDRAALVQMLSM 578
Query: 524 LS-----LPLPQPALLKAGSGDCYWTSTQILQCAL------------------------- 553
+S +P PA+ K WT QI +
Sbjct: 579 MSDANVQYDIPPPAIFKPV---MLWTGKQIFSLLIRPNKNSKVLINLDAKNKTFIPPLKG 635
Query: 554 -PLSFDCTGGRYLIRESDILGFDLGRDVL-PAVINEIAASVFFGKGPQEALNFFDVLQPF 611
P G +IR S IL + + +L + + ++ GP EA N + +
Sbjct: 636 FPNEMSQNDGFVVIRGSQILSGVMDKSLLGDGKKHSVFYTILRDYGPDEAANAMNRMAKL 695
Query: 612 LMECIFSNGFSVGLHDFSISGAVKRITDRNIGKVSPLLYQLRFIYN--ELVAQQLEKHMQ 669
+ + GFS+G++D +K+ + + + +L +YN +L Q Q
Sbjct: 696 CARFMGNRGFSIGINDVIPGSELKQKKELMVEQAYLKCDELIDLYNRGKLETQPGCNEEQ 755
Query: 670 DIELPAIKFASK-SSRLGDM----IDSK----------SKSALDKVTQQIGFLGQQLFVR 714
+E SK ++G++ +DS SK + V+Q + +GQQ+ +
Sbjct: 756 TLEAKIGGLLSKVREQVGEICIKELDSANAPLIMATCGSKGSTLNVSQMVAVVGQQI-IS 814
Query: 715 GRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMV 774
G G + HF P ++ G ++ FF GL P E L H+IS RE +V
Sbjct: 815 GNRVPDGFQDRSLPHFT-----KNSKTPQSK-GFVRNSFFSGLSPTEFLFHAISGREGLV 868
Query: 775 RSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 819
++ +E G + + LM L D+ YD TVRN SN I+QF YG
Sbjct: 869 DTAVKTAETGYMSRRLMKSLEDLSTQYDNTVRN-SSNGIVQFTYG 912
>K4N3B4_9EUKA (tr|K4N3B4) DNA-directed RNA polymerase OS=Amoeboaphelidium
protococcarum GN=RPB1 PE=3 SV=1
Length = 1767
Score = 178 bits (451), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 151/562 (26%), Positives = 243/562 (43%), Gaps = 63/562 (11%)
Query: 314 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLVD- 372
+++ + K FS+R+VITGD ++EVG+P IA+ +TF E V N LQ+ VD
Sbjct: 341 RLRGNLMGKRVDFSARTVITGDPNISLDEVGVPRTIAKTLTFPEIVTPFNFQQLQEAVDN 400
Query: 373 ---ENLCLAY--KEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSL 427
E+ Y ++ L L G V R I DGDIV NR P+ HK S+
Sbjct: 401 GPNEHPGARYVIRQNGDRIDLSRAGAIELQLNVGDKVERHIRDGDIVLFNRQPSLHKMSM 460
Query: 428 QALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSH 487
V + T ++N + P ADFDGD ++L PQS KAE+ E+ V +Q++S
Sbjct: 461 MGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSYETKAELSEICMVPRQIVSPQ 520
Query: 488 XXXXXXXXXXXXXXXXXXXVKKGFMDRAAANQMAMFLSL-------PLPQPALLKAGSGD 540
K+ D +M M L + LPQPA++K
Sbjct: 521 ANRPVMGIVQDTLCGVRKFTKR---DSFLTKEMVMSLCMWVRDWDGQLPQPAIIKPVP-- 575
Query: 541 CYWTSTQILQCALPLSFDCTG-----------------GRYLIRESDILGFDLGRDVLPA 583
WT QI +P + G + +I + +++ + + +
Sbjct: 576 -LWTGKQIFSLIIPPGTNMIGYHSQHPDNESSDISPGDTKVVIYDGELVCGIICKKTVGT 634
Query: 584 VINEIAASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHD------------FSIS 631
N + ++ GP++ NFFD Q + +FS GFS+G+ D +IS
Sbjct: 635 SQNSLIHVIWKEHGPEKTRNFFDGCQAVVNNWLFSYGFSIGIGDTIADAQTMQVVATTIS 694
Query: 632 GAVKRITD------RNIGKVSPLLYQLRFIYNELVAQQLEKHMQDIELPAIKFASKSSRL 685
A ++T+ RN+ + SP + ++ + V Q+L + A K + ++ +
Sbjct: 695 NAKNKVTEYISQAHRNVLQPSPGM-TIQESFESRVNQELNRARDIAGASAQKSLNDANNV 753
Query: 686 GDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAE 745
M+ + SK + ++Q +GQQ V GR G HF D P +
Sbjct: 754 KQMVVAGSKGSFINISQMTACVGQQ-NVEGRRIPFGFKYRTLPHFT-----KDDQSPESR 807
Query: 746 YGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTV 805
G ++ + GL P E H++ RE ++ ++ +E G + + L+ L DV V YD +V
Sbjct: 808 -GFVENSYLRGLTPSELFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVSVGYDCSV 866
Query: 806 RNVCSNSIIQFEYGLKAGDNAS 827
RN ++QF YG D S
Sbjct: 867 RNALGQ-VLQFAYGEDGMDGTS 887
>Q95W43_TRYCR (tr|Q95W43) DNA-directed RNA polymerase OS=Trypanosoma cruzi
GN=RPIIls PE=3 SV=2
Length = 1731
Score = 178 bits (451), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 152/562 (27%), Positives = 237/562 (42%), Gaps = 50/562 (8%)
Query: 309 KAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQ 368
K +++ + K FS+R+VITGD ++EVG+P IA +TF ERV++ N L
Sbjct: 321 KGKYGRLRGNLMGKRVDFSARTVITGDPNIDVDEVGVPFSIAMTLTFPERVSAVNKKRLT 380
Query: 369 KLVDENLC-----LAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTH 423
+ V + + + G +T + L G +V R +++GD+V NR PT H
Sbjct: 381 EFVRRPVYPSANYIHHPNGTTTKLALRRDRSKVTLNIGDVVERHVINGDVVLFNRQPTLH 440
Query: 424 KHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQL 483
+ S+ V + + +T ++N P ADFDGD ++L PQSL KAE++E+ V K
Sbjct: 441 RMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNF 500
Query: 484 LSSHXXXXXXXXXXXXXXXXXXXV-KKGFMDRAAANQMAMFLSL-PLPQPALLKAGSGDC 541
+S + K F+D+ +A++L L LP PA+LK
Sbjct: 501 VSPNKSAPCMGIVQDSLLGSYRLTDKDTFLDKYFVQSVALWLDLWQLPVPAVLKPRP--- 557
Query: 542 YWTSTQILQCALP-----------LSFDCTGGRYLIRESDILGFDLGRDVLPAVINEIAA 590
WT Q+ LP F +IR +L + + ++ A +
Sbjct: 558 LWTGKQVFSLILPEVNHPATPQERPPFPHNDSSIMIRRGQLLCGPITKGIVGAAPGSLIH 617
Query: 591 SVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHDFSISGAVKR-------ITDRNIG 643
+F +G E F + +Q + + GFSVG+ D R T N+
Sbjct: 618 VIFNERGSDEVARFINGVQRITTFFLINFGFSVGVQDTVADADTLRQMNEVLVKTRENVE 677
Query: 644 KVSPLL----------YQLRFIYNELVAQQLEKHMQDIELPAIKFASKSSRLGDMIDSKS 693
K+ L + V L K ++ A+ +++ MI++ S
Sbjct: 678 KIGAAANNRTLNRKAGMTLLQSFEADVNSALNKCREEAAKKALSNVRRTNSFKVMIEAGS 737
Query: 694 KSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGCF 753
K + Q F+GQQ V G G HF L D Y G+ +
Sbjct: 738 KGTDLNICQIAVFVGQQ-NVAGSRIPFGFRRRTLPHFML------DDYGETSRGMANRGY 790
Query: 754 FHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSI 813
GL P E H+++ RE ++ ++ S+ G L + L+ L DV YDGTVRN + +
Sbjct: 791 VEGLKPHEFFFHTMAGREGLIDTAVKTSDTGYLQRKLIKALEDVHAAYDGTVRN-ANQEL 849
Query: 814 IQFEYGLKAGDNASY----LFP 831
IQF YG D A LFP
Sbjct: 850 IQFMYGEDGLDGARIEGGQLFP 871
>Q2PYS5_HYACU (tr|Q2PYS5) DNA-directed RNA polymerase (Fragment)
OS=Hyaloraphidium curvatum GN=RPB1 PE=3 SV=1
Length = 1002
Score = 178 bits (451), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 151/556 (27%), Positives = 241/556 (43%), Gaps = 66/556 (11%)
Query: 314 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLVDE 373
+++ + K FSSR+VITGD I+EVG+P IA+ +TF E V HN+ LQ+LV
Sbjct: 258 RIRGNLMGKRVDFSSRTVITGDPNISIDEVGVPRSIARTLTFPEIVTPHNVARLQELVRN 317
Query: 374 NLCLAYKEGVSTYSLREG----------SKGHTYLKPGQIVHRRIMDGDIVFINRPPTTH 423
A + + Y +R+ G L+ G V R + DGD V NR P+ H
Sbjct: 318 G---ALEHPGANYIVRQSGDRISLKFVPQAGDQPLQIGDTVERHLQDGDYVIFNRQPSLH 374
Query: 424 KHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQL 483
K S+ V I T ++N + P ADFDGD ++L PQS +AE+ E+ V +Q+
Sbjct: 375 KMSMMGHRVKIMPFSTFRLNLSVTTPYNADFDGDEMNLHAPQSYETRAEIKEIMMVPRQI 434
Query: 484 LSSHXXXXXXXXXXXXX-XXXXXXVKKGFMDRAAANQMAMFL----SLPLPQPALLKAGS 538
+S ++ M R + M++ P P PA+LK
Sbjct: 435 ISPQANKPVMGIVQDTFCGIRKFTLRDNMMTRDMVMNICMWIPDWDGQP-PPPAILKP-- 491
Query: 539 GDCYWTSTQILQCALPLSFDCTG-----------------GRYLIRESDILGFDLGRDVL 581
WT Q++ +P + TG + +I + +L L + +
Sbjct: 492 -QPLWTGKQLMSMVIPSRINVTGKHSTHPDDERDNISPGDTQVVIEDGVVLAGILSKRTV 550
Query: 582 PAVINEIAASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHD--------FSISGA 633
I + GP+ A FF+ Q + + NGFS+G+ D I+
Sbjct: 551 GNSAGGIIHVIMNEYGPEMAKKFFNGTQRVVNYWLLQNGFSIGIGDTVADKATMHQINQI 610
Query: 634 VKRITDRNIGKVSPLLYQ----------LRFIYNELVAQQLEKHMQDIELPAIKFASKSS 683
+KR + ++G+ Q +R + +V + L K +D A K + +
Sbjct: 611 LKRAKE-DVGETIARAQQNQLEPQPGMTIRETFESVVNKILNKAREDAGKAATKSLAPFN 669
Query: 684 RLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPS 743
M+D+ SK + ++Q +GQQ V G+ G HF D P
Sbjct: 670 NAKQMVDAGSKGSEINISQMAACVGQQ-NVEGKRIPFGFRLRTLPHFT-----KDDQSPE 723
Query: 744 AEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDG 803
+ G ++ + GL P E H++ RE ++ ++ +E G + + L+ L DV+V YDG
Sbjct: 724 SR-GFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDG 782
Query: 804 TVRNVCSNSIIQFEYG 819
TVRN + +IQF YG
Sbjct: 783 TVRNSLGH-VIQFAYG 797
>H2AUV0_KAZAF (tr|H2AUV0) DNA-directed RNA polymerase OS=Kazachstania africana
(strain ATCC 22294 / BCRC 22015 / CBS 2517 / CECT 1963 /
NBRC 1671 / NRRL Y-8276) GN=KAFR0D05030 PE=3 SV=1
Length = 1462
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 210/897 (23%), Positives = 347/897 (38%), Gaps = 155/897 (17%)
Query: 45 NPFLGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKM 104
+P +G+ CE+C + A C GHFG+I+L +P++H + ++L +C NC +
Sbjct: 55 DPRMGVSSSSLTCETCHGNLAS-CHGHFGHIKLALPVFHVGYFKATIQILQAICKNCSSV 113
Query: 105 -------KKTKFPSSSSG---------LAQRLLSPC-----CQEPNAAQVSIREVKTGDG 143
KK +SG + ++++ C C A +++ G G
Sbjct: 114 LLSDEDKKKYLHELRTSGRIDNLKKMGILKKVMDQCKKQRRCLHCGALNGVVKKAAAGSG 173
Query: 144 ACYL---------VLKVSKSKMQDGFWRFLDKYGYRYEVDH-----TRALLPCEVMEMIK 189
L V K S + + + + + E++ T L P + + + K
Sbjct: 174 TASLKIIHDTFRWVGKKSTPEKDNWIGDWNEVLSHHPELERFVKRCTDDLNPLKTLNLFK 233
Query: 190 RFPLETKKKLAGKGYFPQ---DGYVIKYLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKL 246
+ E + L + Y+ +YLP PP C+ L ++
Sbjct: 234 QVRPEDCELLGIDSTVKSGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTIKLTEI 293
Query: 247 LRKVEVIRSSRSGEPNFESHQVEANDLQSVVDQYLQ--------IRGCAKPARDIETHFG 298
+ +I++ + + + LQ V Y+ + G + ++ G
Sbjct: 294 VWTSSLIKAGLEKGISINNMMEHWDYLQLTVAMYINADSVNPAMLPGASSGGGKVKPIRG 353
Query: 299 VNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEER 358
+ L K + + K FS R+VI+ D I+EV +P +A+ +T+ E+
Sbjct: 354 FCQRL-----KGKQGRFRGNLSGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTYPEK 408
Query: 359 VNSHNMCYLQKLV--------DENLCLAYKEGVSTYSLREGS--KGHTYLKPGQIVHRRI 408
V +N LQ+LV N L E + +LR G K L+ G IV R +
Sbjct: 409 VTRYNRKKLQELVMNGPNIHPGANYLLKKNEE-ARRNLRYGDRLKLAKNLQYGDIVERHL 467
Query: 409 MDGDIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLA 468
DGD+V NR P+ H+ S+ + I T ++N +C P ADFDGD ++L PQ+
Sbjct: 468 EDGDVVLFNRQPSLHRLSILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEE 527
Query: 469 AKAEVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKK-GFMDRAAANQMAMFLS-- 525
A+AE + L V+ LL+ K F DRA Q+ +S
Sbjct: 528 ARAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFFDRATFTQLLSMMSDG 587
Query: 526 ---LPLPQPALLKAGSGDCYWTSTQILQC---------------------------ALPL 555
+P PA++K WT Q+ +LP
Sbjct: 588 NLQFDIPPPAIMKPY---YLWTGKQLFSLLIKPNHKSPVVINLDAKNKVYIPPKSKSLPN 644
Query: 556 SFDCTGGRYLIRESDILGFDLGRDVL-PAVINEIAASVFFGKGPQEALNFFDVLQPFLME 614
G +IR S+IL + + VL + + ++ GPQEA N + +
Sbjct: 645 EMSRNDGFVIIRGSNILSGVMDKSVLGDGKKHSVFYTILRDYGPQEAANAMNRMSKLCAR 704
Query: 615 CIFSNGFSVGLHDFSISGAVK----------------RITDRNIG--------------- 643
+ + GFS+G+ D + + +K I N G
Sbjct: 705 FLGNRGFSIGISDVTPADDLKIKKEELVEIAYAKCDDLIDSYNKGKLETQPGCNEEETLE 764
Query: 644 -KVSPLLYQLRFIYNELVAQQLEKHMQDIELPAIKFASKSSRLGDMIDSKSKSALDKVTQ 702
K+ LL ++R E V + ++ P I M SK + V+Q
Sbjct: 765 AKIGGLLSKVR----EEVGDVCINELDNLNAPLI-----------MATCGSKGSTLNVSQ 809
Query: 703 QIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEE 762
+ +GQQ+ + G G + HF P ++ G ++ FF GL P E
Sbjct: 810 MVAVVGQQI-ISGNRVPDGFQDRSLPHFP-----KNSKTPQSK-GFVRNSFFSGLTPPEF 862
Query: 763 LVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 819
L H+IS RE +V ++ +E G + + LM L D+ YD TVR SN I+QF YG
Sbjct: 863 LFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSCQYDNTVR-TSSNGIVQFTYG 918
>Q5A0Z3_CANAL (tr|Q5A0Z3) DNA-directed RNA polymerase OS=Candida albicans (strain
SC5314 / ATCC MYA-2876) GN=RPO3 PE=3 SV=1
Length = 1448
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 215/878 (24%), Positives = 347/878 (39%), Gaps = 129/878 (14%)
Query: 48 LGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLK---- 103
+G+ C +C + A C GHFG+I L +P++H + + +L +C +C
Sbjct: 58 MGISSNAQECSTCHGNLAS-CHGHFGHIRLALPVFHVGYFKSIISVLQCICKSCAAVLLD 116
Query: 104 -------MKKTKFPSSSS----GLAQRLLSPC-----CQEPNAAQVSIREVKTGDGACYL 147
+ + P + + ++++ C C + N +++ +G G L
Sbjct: 117 EQSKRQYLNDLRKPHIDNLRRMKIIKKIIEQCKKQRRCLKCNHINGVVKKAASGAGPAAL 176
Query: 148 VLKVSKSKMQDGFWRFLDKYGYRYEVDHTRALLPCEVMEMIKRF-----PLETKKKLAGK 202
+ V + G L+K + E+D P E+ + KR PL+T K
Sbjct: 177 KI-VHDTFRWIGKKETLEKTIWDEELDQVFIRNP-ELEKFAKRIHDDLNPLKTLNLF--K 232
Query: 203 GYFPQD---------------GYVIKYLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLL 247
PQD Y+ +YLP PP C+ L +++
Sbjct: 233 QITPQDCELFGLDPAKGGRPEMYIWRYLPAPPVCIRPSVMMDSQSNEDDLTVK--LTEIV 290
Query: 248 RKVEVIRSSRSGEPNFESHQVEANDLQSVVDQYLQIRGCAKPARDIETHFGVNKELSDAS 307
+IR+ + + + + LQ V Y+ A PA + T G K S
Sbjct: 291 WTSSMIRAGIVKGISINNLMEQWDYLQLSVAMYIN-SDSANPA--LSTGGGGAK--SSKP 345
Query: 308 NKAWLDKMKS---LFISKGSG----FSSRSVITGDGYKRINEVGIPHEIAQRITFEERVN 360
+A+ ++K F SG FS R+VI+ D +I+EV +P +A+ +T+ E+
Sbjct: 346 IRAFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCT 405
Query: 361 SHNMCYLQKLV--------DENLCLAYKE-GVSTYSLREGSKGHTYLKPGQIVHRRIMDG 411
+N LQKLV N + E G + K L+ G +V R I DG
Sbjct: 406 RYNKKKLQKLVVNGPDIHPGANYVMKQNEPGKRNLRFGDRVKLAKTLQIGDVVERHIEDG 465
Query: 412 DIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKA 471
D+V NR P+ H+ S+ + I T ++N +C P ADFDGD ++L PQ+ A+A
Sbjct: 466 DVVLFNRQPSLHRLSILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARA 525
Query: 472 EVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKK-GFMDRAAANQMAMFLS----- 525
E + L V+ LL+ K F DRA Q+ +S
Sbjct: 526 EAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFFDRATLVQLLSMMSDADIQ 585
Query: 526 LPLPQPALLKAGSGDCYWTSTQILQC--------------------------ALPLSFDC 559
+P P + K WT Q+ LP
Sbjct: 586 FDIPPPTIFKPV---MLWTGKQVFSLLIKPNKKSNVVINLDAKNKTFHPPKKGLPNEMSP 642
Query: 560 TGGRYLIRESDILGFDLGRDVL-PAVINEIAASVFFGKGPQEALNFFDVLQPFLMECIFS 618
G +IR S IL + + L + + ++ GPQEA + + + +
Sbjct: 643 NDGFVVIRGSKILSGLMDKSTLGDGKKHSVFYTILRDYGPQEAAAAMNRMAKLCARFLGN 702
Query: 619 NGFSVGLHDFSISGAVKRITDRNIGKVSPLLYQLRFIYN--ELVAQQLEKHMQDIELPAI 676
GFS+G++D + + +K+ + + + QL +YN +L Q Q +E
Sbjct: 703 RGFSIGINDVTPADELKQKKELMVEQAYLKCDQLIDLYNRGKLETQPGCNEEQTLEAKIG 762
Query: 677 KFASK-SSRLGD--------------MIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKG 721
SK +GD M SK + V+Q + +GQQ+ + G G
Sbjct: 763 GLLSKVREEVGDVCIRELDSLNAPLIMATCGSKGSTLNVSQMVAVVGQQI-ISGHRVPDG 821
Query: 722 LLEDVASHFKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLS 781
+ HF P ++ G ++ FF GL P E L H+IS RE +V ++ +
Sbjct: 822 FQDRSLPHFT-----KNSKTPQSK-GFVRNSFFSGLTPPEFLFHAISGREGLVDTAVKTA 875
Query: 782 EPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 819
E G + + LM L D+ YD TVRN SN I+QF YG
Sbjct: 876 ETGYMSRRLMKSLEDLSSQYDNTVRN-SSNGIVQFTYG 912
>Q4DDX5_TRYCC (tr|Q4DDX5) DNA-directed RNA polymerase OS=Trypanosoma cruzi
(strain CL Brener) GN=Tc00.1047053509011.20 PE=3 SV=1
Length = 1731
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 152/562 (27%), Positives = 237/562 (42%), Gaps = 50/562 (8%)
Query: 309 KAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQ 368
K +++ + K FS+R+VITGD ++EVG+P IA +TF ERV++ N L
Sbjct: 321 KGKYGRLRGNLMGKRVDFSARTVITGDPNIDVDEVGVPFSIAMTLTFPERVSAVNKKRLT 380
Query: 369 KLVDENLC-----LAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTH 423
+ V + + + G +T + L G +V R +++GD+V NR PT H
Sbjct: 381 EFVRRPVYPSANYIHHPNGTTTKLALRRDRSKVTLNIGDVVERHVINGDVVLFNRQPTLH 440
Query: 424 KHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQL 483
+ S+ V + + +T ++N P ADFDGD ++L PQSL KAE++E+ V K
Sbjct: 441 RMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNF 500
Query: 484 LSSHXXXXXXXXXXXXXXXXXXXV-KKGFMDRAAANQMAMFLSL-PLPQPALLKAGSGDC 541
+S + K F+D+ +A++L L LP PA+LK
Sbjct: 501 VSPNKSAPCMGIVQDSLLGSYRLTDKDTFLDKYFVQSVALWLDLWQLPVPAVLKPRP--- 557
Query: 542 YWTSTQILQCALP-----------LSFDCTGGRYLIRESDILGFDLGRDVLPAVINEIAA 590
WT Q+ LP F +IR +L + + ++ A +
Sbjct: 558 LWTGKQVFSLILPEVNHPATPQERPPFPHNDSSIMIRRGQLLCGPITKGIVGAAPGSLIH 617
Query: 591 SVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHDFSISGAVKR-------ITDRNIG 643
+F +G E F + +Q + + GFSVG+ D R T N+
Sbjct: 618 VIFNERGSDEVARFINGVQRITTFFLINFGFSVGVQDTVADADTLRQMNEVLVKTRENVE 677
Query: 644 KVSPLL----------YQLRFIYNELVAQQLEKHMQDIELPAIKFASKSSRLGDMIDSKS 693
K+ L + V L K ++ A+ +++ MI++ S
Sbjct: 678 KIGAAANNRTLNRKAGMTLLQSFEADVNSALNKCREEAAKKALSNVRRTNSFKVMIEAGS 737
Query: 694 KSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGCF 753
K + Q F+GQQ V G G HF L D Y G+ +
Sbjct: 738 KGTDLNICQIAVFVGQQ-NVAGSRIPFGFRRRTLPHFML------DDYGETSRGMANRGY 790
Query: 754 FHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSI 813
GL P E H+++ RE ++ ++ S+ G L + L+ L DV YDGTVRN + +
Sbjct: 791 VEGLKPHEFFFHTMAGREGLIDTAVKTSDTGYLQRKLIKALEDVHAAYDGTVRN-ANQEL 849
Query: 814 IQFEYGLKAGDNASY----LFP 831
IQF YG D A LFP
Sbjct: 850 IQFMYGEDGLDGARIEGGQLFP 871
>C4YGE6_CANAW (tr|C4YGE6) DNA-directed RNA polymerase OS=Candida albicans (strain
WO-1) GN=CAWG_03122 PE=3 SV=1
Length = 1448
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 215/878 (24%), Positives = 347/878 (39%), Gaps = 129/878 (14%)
Query: 48 LGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLK---- 103
+G+ C +C + A C GHFG+I L +P++H + + +L +C +C
Sbjct: 58 MGISSNAQECSTCHGNLAS-CHGHFGHIRLALPVFHVGYFKSIISVLQCICKSCAAVLLD 116
Query: 104 -------MKKTKFPSSSS----GLAQRLLSPC-----CQEPNAAQVSIREVKTGDGACYL 147
+ + P + + ++++ C C + N +++ +G G L
Sbjct: 117 EQSKRQYLNDLRKPHIDNLRRMKIIKKIIEQCKKQRRCLKCNHINGVVKKAASGAGPAAL 176
Query: 148 VLKVSKSKMQDGFWRFLDKYGYRYEVDHTRALLPCEVMEMIKRF-----PLETKKKLAGK 202
+ V + G L+K + E+D P E+ + KR PL+T K
Sbjct: 177 KI-VHDTFRWIGKKETLEKTIWDEELDQVFIRNP-ELEKFAKRIHDDLNPLKTLNLF--K 232
Query: 203 GYFPQD---------------GYVIKYLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLL 247
PQD Y+ +YLP PP C+ L +++
Sbjct: 233 QITPQDCELFGLDPAKGGRPEMYIWRYLPAPPVCIRPSVMMDAQSNEDDLTVK--LTEIV 290
Query: 248 RKVEVIRSSRSGEPNFESHQVEANDLQSVVDQYLQIRGCAKPARDIETHFGVNKELSDAS 307
+IR+ + + + + LQ V Y+ A PA + T G K S
Sbjct: 291 WTSSMIRAGIVKGISINNLMEQWDYLQLSVAMYIN-SDSANPA--LSTGGGGAK--SSKP 345
Query: 308 NKAWLDKMKS---LFISKGSG----FSSRSVITGDGYKRINEVGIPHEIAQRITFEERVN 360
+A+ ++K F SG FS R+VI+ D +I+EV +P +A+ +T+ E+
Sbjct: 346 IRAFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCT 405
Query: 361 SHNMCYLQKLV--------DENLCLAYKE-GVSTYSLREGSKGHTYLKPGQIVHRRIMDG 411
+N LQKLV N + E G + K L+ G +V R I DG
Sbjct: 406 RYNKKKLQKLVVNGPDIHPGANYVMKQNEPGKRNLRFGDRVKLAKTLQIGDVVERHIEDG 465
Query: 412 DIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKA 471
D+V NR P+ H+ S+ + I T ++N +C P ADFDGD ++L PQ+ A+A
Sbjct: 466 DVVLFNRQPSLHRLSILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARA 525
Query: 472 EVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKK-GFMDRAAANQMAMFLS----- 525
E + L V+ LL+ K F DRA Q+ +S
Sbjct: 526 EAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFFDRATLVQLLSMMSDADIQ 585
Query: 526 LPLPQPALLKAGSGDCYWTSTQILQC--------------------------ALPLSFDC 559
+P P + K WT Q+ LP
Sbjct: 586 FDIPPPTIFKPV---MLWTGKQVFSLLIKPNKKSNVVINLDAKNKTFHPPKKGLPNEMSP 642
Query: 560 TGGRYLIRESDILGFDLGRDVL-PAVINEIAASVFFGKGPQEALNFFDVLQPFLMECIFS 618
G +IR S IL + + L + + ++ GPQEA + + + +
Sbjct: 643 NDGFVVIRGSKILSGLMDKSTLGDGKKHSVFYTILRDYGPQEAAAAMNRMAKLCARFLGN 702
Query: 619 NGFSVGLHDFSISGAVKRITDRNIGKVSPLLYQLRFIYN--ELVAQQLEKHMQDIELPAI 676
GFS+G++D + + +K+ + + + QL +YN +L Q Q +E
Sbjct: 703 RGFSIGINDVTPADELKQKKELMVEQAYLKCDQLIDLYNRGKLETQPGCNEEQTLEAKIG 762
Query: 677 KFASK-SSRLGD--------------MIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKG 721
SK +GD M SK + V+Q + +GQQ+ + G G
Sbjct: 763 GLLSKVREEVGDVCIRELDSLNAPLIMATCGSKGSTLNVSQMVAVVGQQI-ISGHRVPDG 821
Query: 722 LLEDVASHFKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLS 781
+ HF P ++ G ++ FF GL P E L H+IS RE +V ++ +
Sbjct: 822 FQDRSLPHFT-----KNSKTPQSK-GFVRNSFFSGLTPPEFLFHAISGREGLVDTAVKTA 875
Query: 782 EPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 819
E G + + LM L D+ YD TVRN SN I+QF YG
Sbjct: 876 ETGYMSRRLMKSLEDLSSQYDNTVRN-SSNGIVQFTYG 912
>G0UT19_TRYCI (tr|G0UT19) DNA-directed RNA polymerase OS=Trypanosoma congolense
(strain IL3000) GN=TCIL3000_8_7610 PE=3 SV=1
Length = 1754
Score = 177 bits (450), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 156/563 (27%), Positives = 245/563 (43%), Gaps = 54/563 (9%)
Query: 309 KAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQ 368
K +++ + K FS+R+VITGD ++EVG+P +A +TF ERVN+ N L
Sbjct: 338 KGKYGRLRGNLMGKRVDFSARTVITGDPNIDVDEVGVPFSVAMTLTFPERVNTVNKKRLT 397
Query: 369 KLVDENLC-----LAYKEGVST--YSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPT 421
+ V + + + G T LR+ SK L G IV R +++GD+V NR PT
Sbjct: 398 EFVRREVYPSANYIHHPNGTITKLALLRDRSK--VTLNIGDIVERHVINGDVVLFNRQPT 455
Query: 422 THKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEK 481
H+ S+ V + + +T ++N P ADFDGD ++L PQSL KAE++E+ V K
Sbjct: 456 LHRMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPK 515
Query: 482 QLLSSHXXXXXXXXXXXXXXXXXXXVKKGFMDRAAANQMAMFLSL-PLPQPALLKAGSGD 540
+S K F+D+ +A++L L LP PA+LK
Sbjct: 516 NFVSPTSQRRAWELCRTVCSEATGD-KDTFLDKYFVQSVALWLDLWQLPIPAVLKPRP-- 572
Query: 541 CYWTSTQILQCALP-----------LSFDCTGGRYLIRESDILGFDLGRDVLPAVINEIA 589
WT Q+ LP F +IR ++L + + ++ A +
Sbjct: 573 -LWTGKQVFSLILPEVNHPTTPHDKPPFPHNDSSVMIRRGELLCGPITKGIVGAAPGSLI 631
Query: 590 ASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHD-FSISGAVKRI------TDRNI 642
+F +G E F + +Q + + GFSVG+ D + + ++++ T N+
Sbjct: 632 HVIFNEQGSDEVARFINGVQRVTTFFLLNFGFSVGVQDTVADTDTLRQMNEVLVKTRENV 691
Query: 643 GKVSPLL----------YQLRFIYNELVAQQLEKHMQDIELPAIKFASKSSRLGDMIDSK 692
K+ L + V L K ++ A+ +++ MI++
Sbjct: 692 EKIGAAANNRTLNRKAGMTLLQSFEADVNSALNKCREEAAKKALSNVRRTNSFKVMIEAG 751
Query: 693 SKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGC 752
SK + Q F+GQQ V G G HF L D Y G+
Sbjct: 752 SKGTDLNICQIAVFVGQQ-NVAGSRIPFGFRRRTLPHFML------DDYGETSRGMANRG 804
Query: 753 FFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNS 812
+ GL P E H+++ RE ++ ++ S+ G L + L+ L DV YDGTVRN +
Sbjct: 805 YVEGLKPHEFFFHTMAGREGLIDTAVKTSDTGYLQRKLIKALEDVHAAYDGTVRN-ANEE 863
Query: 813 IIQFEYGLKAGDNASY----LFP 831
+IQF YG D A LFP
Sbjct: 864 LIQFMYGEDGLDGARIEGGQLFP 886
>H2KUH4_CLOSI (tr|H2KUH4) DNA-directed RNA polymerase OS=Clonorchis sinensis
GN=CLF_109014 PE=3 SV=1
Length = 1877
Score = 177 bits (450), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 196/852 (23%), Positives = 332/852 (38%), Gaps = 127/852 (14%)
Query: 57 CESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLK------------- 103
C++C + C GHFG++EL P++H + + K+L VC +C K
Sbjct: 39 CQTC-SGNVSNCPGHFGHVELAKPVFHIGFMKKTLKLLRCVCFHCSKILVDVQSPQIQEI 97
Query: 104 MKKTKFPSSSSGLAQ----RLLSPCCQEPN--AAQVSIREVKTGDGACYLVLKVSKSKMQ 157
++KTK + + + + C + + E KT C + Q
Sbjct: 98 LRKTKNDNRRRMMFMYEECKSRTECLSNEDQIGGENDTLENKTKRAGC--------GRYQ 149
Query: 158 DGFWRFLDKYGYRY-----EVDHTRALLPCE-VMEMIKRFPLETKKKLAGKGYFPQ---- 207
F R + + E + L E V+E+ KR E L G+ P+
Sbjct: 150 PRFRRIGLELTAEWKKINEESQERKITLTAERVLEVFKRISDEDCLSL---GFDPRYARP 206
Query: 208 DGYVIKYLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEVIRSSRSGEPNFESHQ 267
D +I LPVPP + KL ++ R E N +
Sbjct: 207 DWMIITVLPVPPLAVRPAVVMYGATRNQDD----LTHKLADIIKANNQLRRDEQNGAASH 262
Query: 268 VEANDLQ-------SVVDQYL-----QIRGCAKPARDIETHFGVNKELSDASNKAWLDKM 315
+ A D++ ++ D + I+ +P + I+T K ++
Sbjct: 263 ILAEDIRMLQFHVTTMTDNDVPGLPKAIQKSGRPLKSIKTRL-----------KGKAGRI 311
Query: 316 KSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLVDENL 375
+ + K FS+R+VIT D +++VG+P IAQ +T+ E V N+ +LQKLV
Sbjct: 312 RGNLMGKRVDFSARTVITADPNLNLDQVGVPRTIAQNLTYPENVTQFNIDHLQKLVQNGT 371
Query: 376 C-----LAYKEGVSTYSLREGSK-GHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQA 429
+E LR K L+ G +V R +++ D V NR PT HK S+
Sbjct: 372 LYPGAKFIVRENGDRIDLRYHPKVADLTLQVGYVVERHMLNDDYVIFNRQPTLHKMSMMC 431
Query: 430 LVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHXX 489
V + T ++N + P ADFDGD ++L PQS+ KAE+ +L V + +++
Sbjct: 432 HRVKVLPWSTFRLNLSVTSPYNADFDGDEMNLHLPQSVETKAEISQLARVSRLVITPQAN 491
Query: 490 XXXXXXXXXXXXXXXXXVKKG-FMDRAAANQMAMFLSL---PLPQPALLKAGSGDCYWTS 545
++ F++RA + M+L +P+PA+ K WT
Sbjct: 492 KPVMSIVQDTLTAVNKMTQRDVFLNRAEMMNLLMYLPTWNGRMPKPAIYKPQR---LWTG 548
Query: 546 TQILQCALPLSFDCT-----------GGRY----------LIRESDILGFDLGRDVLPAV 584
Q+ +P +C GG Y ++ + D++ L + L +
Sbjct: 549 KQLFTLIIPGRVNCIRTHSTHPEDEDGGPYRWISPGDTKVIVDDGDLIAGILCKKTLGSG 608
Query: 585 INEIAASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHDFSISGAVKRITDRNIGK 644
+ V ++ FF+ +Q + + G ++G+ D A +R I K
Sbjct: 609 SGSLIHIVALEHHHEQVSMFFNNIQTVVNNWLLIEGHTIGIADTLYDQATRRQIGETITK 668
Query: 645 VSPLLYQ-----------------LRFIYNELVAQQLEKHMQDIELPAIKFASKSSRLGD 687
+++ LR + V + L A + SK +
Sbjct: 669 AKDAVFEIIDQAHNYDLQPTPGNTLRQTFENSVNKILNDARDKTGSCAQRSLSKYNNFNI 728
Query: 688 MIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYG 747
M+ + SK + ++Q I +GQQ V G+ G HF D Y G
Sbjct: 729 MVVAGSKGSRINISQVIACVGQQ-NVEGKRIPFGFRHRTLPHFI------QDDYGPESRG 781
Query: 748 LLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRN 807
++ + GL P E H++ RE ++ ++ +E G + + L+ + V+V YDGTVRN
Sbjct: 782 FVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVKYDGTVRN 841
Query: 808 VCSNSIIQFEYG 819
N +IQ YG
Sbjct: 842 QI-NQLIQLRYG 852
>Q5A164_CANAL (tr|Q5A164) DNA-directed RNA polymerase OS=Candida albicans (strain
SC5314 / ATCC MYA-2876) GN=RPO3 PE=3 SV=1
Length = 1448
Score = 177 bits (450), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 215/878 (24%), Positives = 347/878 (39%), Gaps = 129/878 (14%)
Query: 48 LGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLK---- 103
+G+ C +C + A C GHFG+I L +P++H + + +L +C +C
Sbjct: 58 MGISSNAQECSTCHGNLAS-CHGHFGHIRLALPVFHVGYFKSIISVLQCICKSCAAVLLD 116
Query: 104 -------MKKTKFPSSSS----GLAQRLLSPC-----CQEPNAAQVSIREVKTGDGACYL 147
+ + P + + ++++ C C + N +++ +G G L
Sbjct: 117 EQSKRQYLNDLRKPHIDNLRRMKIIKKIIEQCKKQRRCLKCNHINGVVKKAASGAGPAAL 176
Query: 148 VLKVSKSKMQDGFWRFLDKYGYRYEVDHTRALLPCEVMEMIKRF-----PLETKKKLAGK 202
+ V + G L+K + E+D P E+ + KR PL+T K
Sbjct: 177 KI-VHDTFRWIGKKETLEKTIWDEELDQVFIRNP-ELEKFAKRIHDDLNPLKTLNLF--K 232
Query: 203 GYFPQD---------------GYVIKYLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLL 247
PQD Y+ +YLP PP C+ L +++
Sbjct: 233 QITPQDCELFGLDPAKGGRPEMYIWRYLPAPPVCIRPSVMMDSQSNEDDLTVK--LTEIV 290
Query: 248 RKVEVIRSSRSGEPNFESHQVEANDLQSVVDQYLQIRGCAKPARDIETHFGVNKELSDAS 307
+IR+ + + + + LQ V Y+ A PA + T G K S
Sbjct: 291 WTSSMIRAGIVKGISINNLMEQWDYLQLSVAMYIN-SDSANPA--LSTGGGGAK--SSKP 345
Query: 308 NKAWLDKMKS---LFISKGSG----FSSRSVITGDGYKRINEVGIPHEIAQRITFEERVN 360
+A+ ++K F SG FS R+VI+ D +I+EV +P +A+ +T+ E+
Sbjct: 346 IRAFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCT 405
Query: 361 SHNMCYLQKLV--------DENLCLAYKE-GVSTYSLREGSKGHTYLKPGQIVHRRIMDG 411
+N LQKLV N + E G + K L+ G +V R I DG
Sbjct: 406 RYNKKKLQKLVVNGPDIHPGANYVMKQNEPGKRNLRFGDRVKLAKTLQIGDVVERHIEDG 465
Query: 412 DIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKA 471
D+V NR P+ H+ S+ + I T ++N +C P ADFDGD ++L PQ+ A+A
Sbjct: 466 DVVLFNRQPSLHRLSILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARA 525
Query: 472 EVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKK-GFMDRAAANQMAMFLS----- 525
E + L V+ LL+ K F DRA Q+ +S
Sbjct: 526 EAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFFDRATLVQLLSMMSDADIQ 585
Query: 526 LPLPQPALLKAGSGDCYWTSTQILQC--------------------------ALPLSFDC 559
+P P + K WT Q+ LP
Sbjct: 586 FDIPPPTIFKPV---MLWTGKQVFSLLIKPNKKSNVVINLDAKNKTFHPPKKGLPNEMSP 642
Query: 560 TGGRYLIRESDILGFDLGRDVL-PAVINEIAASVFFGKGPQEALNFFDVLQPFLMECIFS 618
G +IR S IL + + L + + ++ GPQEA + + + +
Sbjct: 643 NDGFVVIRGSKILSGLMDKSTLGDGKKHSVFYTILRDYGPQEAAAAMNRMAKLCARFLGN 702
Query: 619 NGFSVGLHDFSISGAVKRITDRNIGKVSPLLYQLRFIYN--ELVAQQLEKHMQDIELPAI 676
GFS+G++D + + +K+ + + + QL +YN +L Q Q +E
Sbjct: 703 RGFSIGINDVTPADELKQKKELMVEQAYLKCDQLIDLYNRGKLETQPGCNEEQTLEAKIG 762
Query: 677 KFASK-SSRLGD--------------MIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKG 721
SK +GD M SK + V+Q + +GQQ+ + G G
Sbjct: 763 GLLSKVREEVGDVCIRELDSLNAPLIMATCGSKGSTLNVSQMVAVVGQQI-ISGHRVPDG 821
Query: 722 LLEDVASHFKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLS 781
+ HF P ++ G ++ FF GL P E L H+IS RE +V ++ +
Sbjct: 822 FQDRSLPHFT-----KNSKTPQSK-GFVRNSFFSGLTPPEFLFHAISGREGLVDTAVKTA 875
Query: 782 EPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 819
E G + + LM L D+ YD TVRN SN I+QF YG
Sbjct: 876 ETGYMSRRLMKSLEDLSSQYDNTVRN-SSNGIVQFTYG 912
>H9GLG5_ANOCA (tr|H9GLG5) DNA-directed RNA polymerase OS=Anolis carolinensis
GN=polr2a PE=3 SV=1
Length = 1969
Score = 177 bits (449), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 230/938 (24%), Positives = 368/938 (39%), Gaps = 148/938 (15%)
Query: 45 NPFLGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKM 104
+P G+ GRC++C +C GHFG+IEL P++H + + K+L VC C K+
Sbjct: 58 DPRQGVIERTGRCQTCA-GNMTECPGHFGHIELAKPVFHVGFLGKTMKVLRCVCFFCSKL 116
Query: 105 KKTKFPSSSSGLAQRLLSPCCQEPNAAQVSIREVKTGDGAC---------YLVLK----- 150
S++ + +L+ +P + ++ G C + V +
Sbjct: 117 ----LVDSNNPKIKDILAKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDE 172
Query: 151 -VSKSKMQDGFWRF--------LDKYGYRYEVDHTRA-----LLPCEVMEMIKRFPLETK 196
++K K G R+ L+ Y V+ L P V E+ KR E
Sbjct: 173 DITKEKGHGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEC 232
Query: 197 KKLAGKGYFPQDGYVI-KYLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEVIRS 255
L F + ++I LPVPP + KL V++
Sbjct: 233 FILGMDPKFARPEWMICTVLPVPPLSVRPAVVMQGSARNQDD----LTHKLADIVKINNQ 288
Query: 256 SRSGEPNFESHQVEANDLQ-------SVVDQYLQ--IRGCAKPARDIETHFGVNKELSDA 306
R E N + V A D++ ++VD L R K R +++ + + L
Sbjct: 289 LRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKS---LKQRL--- 342
Query: 307 SNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCY 366
K +++ + K FS+R+VIT D I++VG+P IA +TF E V N+
Sbjct: 343 --KGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDR 400
Query: 367 LQKLVDENLCLAYKEGVSTYS--------------LREGSK-GHTYLKPGQIVHRRIMDG 411
LQ+LV + G S Y LR K +L+ G V R + DG
Sbjct: 401 LQELV--------RRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQIGYKVERHMCDG 452
Query: 412 DIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKA 471
DIV NR PT HK S+ V I T ++N + P ADFDGD ++L PQSL +A
Sbjct: 453 DIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRA 512
Query: 472 EVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKKG-FMDRAAANQMAMFLSL---P 527
E+ EL V + +++ K+ F++R + MFLS
Sbjct: 513 EIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGK 572
Query: 528 LPQPALLKAGSGDCYWTSTQILQCALPLSFDCT-----------GGRY----------LI 566
+PQPA+LK WT QI +P +C G Y ++
Sbjct: 573 VPQPAILKPRP---LWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVIV 629
Query: 567 RESDILGFDLGRDVLPAVINEIAASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLH 626
+++ L + L + + G F+ +Q + + G ++G+
Sbjct: 630 ENGELIMGILCKKSLGTSAGSLVHISYLEMGHDVTRLFYSNIQTVINNWLLIEGHTIGIG 689
Query: 627 DFSISGA-----------------VKRITDRNIGKVSPLL-YQLRFIYNELVAQQLEKHM 668
D SI+ A ++ I + ++ P LR + V + L
Sbjct: 690 D-SIADAKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDAR 748
Query: 669 QDIELPAIKFASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVAS 728
A K S+ + M+ S +K + ++Q I +GQQ V G+ G
Sbjct: 749 DKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQ-NVEGKRIPFGFKHRTLP 807
Query: 729 HFKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFK 788
HF +K DY + G ++ + GL P E H++ RE ++ ++ +E G + +
Sbjct: 808 HF-IKDDYGPES-----RGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQR 861
Query: 789 NLMAILRDVVVCYDGTVRNVCSNSIIQFEYGLKAGDNASYLFPAGEHVGV--LAATAMSN 846
L+ + V+V YD TVRN N ++Q YG AGE V LA SN
Sbjct: 862 RLIKSMESVMVKYDATVRNSI-NQVVQLRYGEDGL--------AGESVEFQNLATLKPSN 912
Query: 847 PAY--KAVLDASPSSNCSWELMKEI---LLCKVHFRNE 879
A+ K D + L +E+ +L H +NE
Sbjct: 913 KAFEKKFKFDYTNERALRRTLQEEMVKDILSNAHIQNE 950
>H2Z9D8_CIOSA (tr|H2Z9D8) DNA-directed RNA polymerase (Fragment) OS=Ciona
savignyi PE=3 SV=1
Length = 1706
Score = 177 bits (448), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 202/857 (23%), Positives = 346/857 (40%), Gaps = 110/857 (12%)
Query: 45 NPFLGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKM 104
+P G+ RC++C S C GHFG+IEL P++H +++ K+L VC C ++
Sbjct: 64 DPRQGVVDRMSRCQTCA-SNMTDCPGHFGHIELARPVFHVGFLTKTIKILRCVCYYCSRL 122
Query: 105 -------KKTKFPSSSSGLAQRLLSPC---------CQEPNAAQVSIREVKTGDGAC-YL 147
K + + S G ++ L+ C+ + + G G C
Sbjct: 123 LVEKGNPKIRQIMAKSKGQPRKRLAHVYELCKGKNICEGGEEMDNTFDVQQLGHGGCGRY 182
Query: 148 VLKVSKSKMQ-DGFWRFLDKYGYRYEVDHTRALLPCE-VMEMIKRFPLETKKKLAGKGYF 205
K+ ++ M+ W+ +++ + + ++ E V E+ KR E L F
Sbjct: 183 QPKIRRNGMELVAEWKHVNE-----DSQEKKIVVSAERVHEIFKRISDEESDILGMDPRF 237
Query: 206 PQDGYVIK-YLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEVIRSSRSGEPNFE 264
+ ++I +PVPP C+ KL ++ + + E N
Sbjct: 238 ARPEWMINTVIPVPPLCVRPSVTMGGTSARSQDD---LTHKLADIIKANQQLKRNEQNGT 294
Query: 265 SHQVEANDLQSVVDQYLQIRGCAKPARDIETHFGVNKELSDASN---------KAWLDKM 315
+ + D++ + QY C D+ GV K L + KA ++
Sbjct: 295 ASHIILEDVKLL--QYHVATLCDN---DMP---GVPKALQKSGRPLKSIKQRLKAKEGRI 346
Query: 316 KSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLVDEN- 374
+ + K FS+R+VIT D +I+EVG+P IA +T+ E V N+ +Q+LV
Sbjct: 347 RGNLMGKRVDFSARTVITPDPNLKIDEVGVPRSIACNLTYPEIVTPFNIDRMQELVRRGN 406
Query: 375 -----LCLAYKEGVSTYSLREGSK-GHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQ 428
++G LR K +L+ G V R I DGD++ NR PT HK S+
Sbjct: 407 NQYPGAKYIIRDGGDRIDLRYHPKPSDLHLQVGYKVERHIKDGDVIVFNRQPTLHKMSMM 466
Query: 429 ALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHX 488
V + T ++N + P ADFDGD +++ PQ++ +AE+++L V + +++
Sbjct: 467 GHKVRVLPWSTFRMNLSVTTPYNADFDGDEMNMHVPQTMETRAEILQLAMVNRMIITPQS 526
Query: 489 XXXXXXXXXXXXXXXXXXVKK-GFMDRAAANQMAMFLS---LPLPQPALLKAGSGDCYWT 544
K+ F+++A + M+L LPQPA+LK WT
Sbjct: 527 NRPVMGIVQDTLTAVRKMTKRDSFIEKADFMNLLMYLGDWDGYLPQPAILKPKP---LWT 583
Query: 545 STQILQCALPLSFDC------------TG---------GRYLIRESDILGFDLGRDVLPA 583
QI +P +C TG R L+ +L + + L
Sbjct: 584 GKQIFSLIIPPGINCIRNHSTHPDGEDTGPYKHISPGDTRVLVENGILLSGIICKKSLGT 643
Query: 584 VINEIAASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHDFSISGAVKRITDRNIG 643
+ V K F+ +Q + + G S+G+ D + I
Sbjct: 644 SAGSLCHVVALEKSADVCREFYSNIQTVVNNWLMIEGHSIGIGDTIADAQTYQDIQNQIR 703
Query: 644 KVSP---------LLYQLRFIYN--------ELVAQQLEKHMQDIELPAIKFASKS---- 682
K L +++ IYN + Q+ + + D A KS
Sbjct: 704 KAKQEVIEVSRFGLDFRMSKIYNPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSDF 763
Query: 683 SRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYP 742
+ M+ + SK + ++Q I +GQQ V G+ G HF +K DY P
Sbjct: 764 NNFKAMVVAGSKGSKINISQVIAVVGQQ-NVEGKRIPFGFRHRTLPHF-IKDDYG----P 817
Query: 743 SAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYD 802
A G ++ + GL P E H++ RE ++ ++ +E G + + L+ + V+V YD
Sbjct: 818 EAR-GFVENSYLAGLTPTEFYFHAMGGREGLIDTAVKTAETGYIQRRLVKAMEAVMVRYD 876
Query: 803 GTVRNVCSNSIIQFEYG 819
GT+R C++ +IQ YG
Sbjct: 877 GTIRQ-CNDYMIQLCYG 892
>M0VV70_HORVD (tr|M0VV70) DNA-directed RNA polymerase OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 682
Score = 177 bits (448), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 198/700 (28%), Positives = 297/700 (42%), Gaps = 84/700 (12%)
Query: 315 MKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNM------CYLQ 368
+K +SK S + R + GD R++E+GIP ++A + E VNS+N C
Sbjct: 4 LKDAILSKRSDNAFRGTMVGDPKIRLHEIGIPVDLASNLVVSEHVNSYNFDSINSKCNHY 63
Query: 369 KLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQ 428
L +E L K T +R+ ++ L G VHR + DGD++ INRPP+ H+HSL
Sbjct: 64 LLANE--VLVIKRSGKTILVRKPNQ----LVIGDTVHRLLQDGDLILINRPPSVHQHSLI 117
Query: 429 ALVVYIHDDHTV-KINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSH 487
L + +V INPL C PL DFDGDC+H + PQS+ ++ E+ EL S+ QLL++
Sbjct: 118 GLSAKLLPIQSVLSINPLCCAPLAGDFDGDCLHGYVPQSIQSRVELGELVSLSHQLLNAQ 177
Query: 488 XXXXXXXXXXXXXXXXXXXV-KKGFMDRAAANQMAMFLS--LPLPQPALLKA-GSGDCYW 543
+ + + Q M L P P PA++K+ S W
Sbjct: 178 DGRSLVSLTHDSLAAAYLLTSSEVLLKKTEIQQFQMLLHPLSPTPGPAIMKSIHSHGPLW 237
Query: 544 TSTQILQCALP--LSFDCTGGRYLIRESDILGFDLGRDVLPAVINEIAASVFFGKGPQEA 601
T Q+ LP +SF ++I + ++L L I+ + + +F G A
Sbjct: 238 TGKQLFSMLLPSDMSFSIESKVHII-DGEVLACPSESFWLQNSISGLFSFMFKQYG-DTA 295
Query: 602 LNFFDVLQPFLMECIFSNGFSVGLHD---FSISGAVKRITD-RNIG-------------K 644
L Q L E + G SV L D F + +++ D N+
Sbjct: 296 LELLSSAQDVLCEFLTMRGLSVSLSDIYLFPDHDSRRKLADGVNLALDDAEEAFRIKQIL 355
Query: 645 VSPLLYQLRFIYNELVAQQLEKHMQDI---ELPAIK-----FASKSSRLGDMI------- 689
+SP + Y++ D LP IK F S S L M+
Sbjct: 356 LSPDSIPILKCYDDCADLSQSYEQSDFIQSNLPIIKSSIMAFKSVFSDLQKMVQQHTARN 415
Query: 690 -------DSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYP 742
++ SK ++ K QQ +G QL + AS + K + G+
Sbjct: 416 NSMMIMTNAGSKGSMLKFVQQTACVGLQLPASRFPFRIPSELSCASWNRHKSEGRGECLG 475
Query: 743 SAE-YGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCY 801
Y +++ F GL+P E L+HSIS R S PGTL + LM LRD+ V Y
Sbjct: 476 GQNLYAVIRNSFAGGLNPLECLLHSISGRANFF--SENADVPGTLTRKLMYHLRDLYVAY 533
Query: 802 DGTVRNVCSNSIIQFEYGLKAGDNASYLFPAGE---HVGVLAATAMSNPAYKAV------ 852
DGTVR+ I+QF Y A D S GE VG AA ++S AY A+
Sbjct: 534 DGTVRSSYGQQIMQFTYD-TAEDMCSDRNLEGELGAPVGSWAACSISEAAYGALDHPVNS 592
Query: 853 LDASPSSNCSWELMKEILLCKVHFRNEPIDRRVILYLNDCDCGRSYCRENAAYAVKNQLR 912
L+ SP N ++++L C+ +D +L+L+ Y E A+ VK+ L
Sbjct: 593 LEESPLMN-----LQDVLKCQK--GGTSMDHVGLLFLSKNLKKYRYGLEYASLEVKDYLE 645
Query: 913 KVSLKDTAVDFIVEYQQQRKRKGSEIDAGLVGHIHLDEVK 952
V+ D +V + + KGS H HL + +
Sbjct: 646 PVNFSDLVDTVMVLHGGCQSTKGSP----WTTHFHLSQCR 681
>M3WBR8_FELCA (tr|M3WBR8) DNA-directed RNA polymerase OS=Felis catus GN=POLR2A
PE=3 SV=1
Length = 1789
Score = 177 bits (448), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 212/870 (24%), Positives = 346/870 (39%), Gaps = 131/870 (15%)
Query: 45 NPFLGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKM 104
+P G+ GRC++C +C GHFG+IEL P++H + + K+L VC C K+
Sbjct: 59 DPRQGVIERTGRCQTCA-GNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKL 117
Query: 105 KKTKFPSSSSGLAQRLLSPCCQEPNAAQVSIREVKTGDGAC---------YLVLK----- 150
S++ + +L+ +P + ++ G C + V +
Sbjct: 118 ----LVDSNNPKIKDILAKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDE 173
Query: 151 -VSKSKMQDGFWRF--------LDKYGYRYEVDH----TRALL-PCEVMEMIKRFPLETK 196
++K K G R+ L+ Y V+ + LL P V E+ KR E
Sbjct: 174 DLAKEKGHGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEC 233
Query: 197 KKLAGKGYFPQDGY-VIKYLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEVIRS 255
L + F + + ++ LPVPP + KL V++
Sbjct: 234 FVLGMEPRFARPEWMIVTVLPVPPLSVRPAVVMQGSVPPQDD----LTHKLADIVKINNQ 289
Query: 256 SRSGEPNFESHQVEANDLQ-------SVVDQYLQ--IRGCAKPARDIETHFGVNKELSDA 306
R E N + V A D++ ++VD L R K R +++ + + L
Sbjct: 290 LRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKS---LKQRL--- 343
Query: 307 SNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCY 366
K +++ + K FS+R+VIT D I++VG+P IA +TF E V N+
Sbjct: 344 --KGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDR 401
Query: 367 LQKLVDENLCLAYKEGVSTYS--------------LREGSK-GHTYLKPGQIVHRRIMDG 411
LQ+LV + G S Y LR K +L+ G V R + DG
Sbjct: 402 LQELV--------RRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDG 453
Query: 412 DIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKA 471
DIV NR PT HK S+ V I T ++N + P ADFDGD ++L PQSL +A
Sbjct: 454 DIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRA 513
Query: 472 EVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKKG-FMDRAAANQMAMFLSL---P 527
E+ EL V + +++ K+ F++R + MFLS
Sbjct: 514 EIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGK 573
Query: 528 LPQPALLKAGSGDCYWTSTQILQCALPLSFDCT-----------GGRY----------LI 566
+PQPA+LK WT QI +P +C G Y ++
Sbjct: 574 VPQPAILKPRP---LWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVV 630
Query: 567 RESDILGFDLGRDVLPAVINEIAASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLH 626
+++ L + L + + G F+ +Q + + G ++G+
Sbjct: 631 ENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIG 690
Query: 627 DF--------SISGAVKR--------ITDRNIGKVSPLL-YQLRFIYNELVAQQLEKHMQ 669
D I +K+ I + ++ P LR + V + L
Sbjct: 691 DSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARD 750
Query: 670 DIELPAIKFASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASH 729
A K S+ + M+ S +K + ++Q I +GQQ V G+ G H
Sbjct: 751 KTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQ-NVEGKRIPFGFKHRTLPH 809
Query: 730 FKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKN 789
F +K DY + G ++ + GL P E H++ RE ++ ++ +E G + +
Sbjct: 810 F-IKDDYGPES-----RGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRR 863
Query: 790 LMAILRDVVVCYDGTVRNVCSNSIIQFEYG 819
L+ + V+V YD TVRN N ++Q YG
Sbjct: 864 LIKSMESVMVKYDATVRNSI-NQVVQLRYG 892
>K4E797_TRYCR (tr|K4E797) DNA-directed RNA polymerase (Fragment) OS=Trypanosoma
cruzi GN=TCSYLVIO_002864 PE=3 SV=1
Length = 1588
Score = 177 bits (448), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 151/562 (26%), Positives = 237/562 (42%), Gaps = 50/562 (8%)
Query: 309 KAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQ 368
K +++ + K FS+R+VITGD ++EVG+P IA +TF ERV++ N L
Sbjct: 176 KGKYGRLRGNLMGKRVDFSARTVITGDPNIDVDEVGVPFSIAMTLTFPERVSAVNKKRLT 235
Query: 369 KLVDENLC-----LAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTH 423
+ V + + + G +T + L G +V R +++GD+V NR PT H
Sbjct: 236 EFVRRPVYPSANYIHHPNGTTTKLALRRDRSKVTLNIGDVVERHLINGDVVLFNRQPTLH 295
Query: 424 KHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQL 483
+ S+ V + + +T ++N P ADFDGD ++L PQSL KAE++E+ V K
Sbjct: 296 RMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNF 355
Query: 484 LSSHXXXXXXXXXXXXXXXXXXXV-KKGFMDRAAANQMAMFLSL-PLPQPALLKAGSGDC 541
+S + K F+D+ +A++L L LP PA+L+
Sbjct: 356 VSPNKSAPCMGIVQDSLLGSYRLTDKDTFLDKYFVQSVALWLDLWQLPVPAVLRPRP--- 412
Query: 542 YWTSTQILQCALP-----------LSFDCTGGRYLIRESDILGFDLGRDVLPAVINEIAA 590
WT Q+ LP F +IR +L + + ++ A +
Sbjct: 413 LWTGKQVFSLILPEVNHPATPQERPPFPHNDSSIMIRRGQLLCGPITKSIVGAAPGSLIH 472
Query: 591 SVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHDFSISGAVKR-------ITDRNIG 643
+F +G E F + +Q + + GFSVG+ D R T N+
Sbjct: 473 VIFNERGSDEVARFINGVQRITTFYLINFGFSVGVQDTVADADTLRQMNEVLVKTRENVE 532
Query: 644 KVSPLL----------YQLRFIYNELVAQQLEKHMQDIELPAIKFASKSSRLGDMIDSKS 693
K+ L + V L K ++ A+ +++ MI++ S
Sbjct: 533 KIGAAANNRTLNRKAGMTLLQSFEADVNSALNKCREEAAKKALSNVRRTNSFKVMIEAGS 592
Query: 694 KSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGCF 753
K + Q F+GQQ V G G HF L D Y G+ +
Sbjct: 593 KGTDLNICQIAVFVGQQ-NVAGSRIPFGFRRRTLPHFML------DDYGETSRGMANRGY 645
Query: 754 FHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSI 813
GL P E H+++ RE ++ ++ S+ G L + L+ L DV YDGTVRN + +
Sbjct: 646 VEGLKPHEFFFHTMAGREGLIDTAVKTSDTGYLQRKLIKALEDVHAAYDGTVRN-ANQEL 704
Query: 814 IQFEYGLKAGDNASY----LFP 831
IQF YG D A LFP
Sbjct: 705 IQFMYGEDGLDGARIEGGQLFP 726
>H9F1K5_MACMU (tr|H9F1K5) DNA-directed RNA polymerase (Fragment) OS=Macaca
mulatta GN=POLR2A PE=2 SV=1
Length = 1658
Score = 177 bits (448), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 212/870 (24%), Positives = 346/870 (39%), Gaps = 131/870 (15%)
Query: 45 NPFLGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKM 104
+P G+ GRC++C +C GHFG+IEL P++H + + K+L VC C K+
Sbjct: 59 DPRQGVIERTGRCQTCA-GNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKL 117
Query: 105 KKTKFPSSSSGLAQRLLSPCCQEPNAAQVSIREVKTGDGAC---------YLVLK----- 150
S++ + +LS +P + ++ G C + V +
Sbjct: 118 ----LVDSNNPKIKDILSKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDE 173
Query: 151 -VSKSKMQDGFWRF--------LDKYGYRYEVDH----TRALL-PCEVMEMIKRFPLETK 196
++K K G R+ L+ Y V+ + LL P V E+ KR E
Sbjct: 174 DLTKEKGHGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEC 233
Query: 197 KKLAGKGYFPQDGY-VIKYLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEVIRS 255
L + + + + ++ LPVPP + KL V++
Sbjct: 234 FVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDD----LTHKLADIVKINNQ 289
Query: 256 SRSGEPNFESHQVEANDLQ-------SVVDQYLQ--IRGCAKPARDIETHFGVNKELSDA 306
R E N + V A D++ ++VD L R K R +++ + + L
Sbjct: 290 LRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKS---LKQRL--- 343
Query: 307 SNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCY 366
K +++ + K FS+R+VIT D I++VG+P IA +TF E V N+
Sbjct: 344 --KGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDR 401
Query: 367 LQKLVDENLCLAYKEGVSTYS--------------LREGSK-GHTYLKPGQIVHRRIMDG 411
LQ+LV + G S Y LR K +L+ G V R + DG
Sbjct: 402 LQELV--------RRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDG 453
Query: 412 DIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKA 471
DIV NR PT HK S+ V I T ++N + P ADFDGD ++L PQSL +A
Sbjct: 454 DIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRA 513
Query: 472 EVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKKG-FMDRAAANQMAMFLSL---P 527
E+ EL V + +++ K+ F++R + MFLS
Sbjct: 514 EIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGK 573
Query: 528 LPQPALLKAGSGDCYWTSTQILQCALPLSFDCT-----------GGRY----------LI 566
+PQPA+LK WT QI +P +C G Y ++
Sbjct: 574 VPQPAILKPRP---LWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVV 630
Query: 567 RESDILGFDLGRDVLPAVINEIAASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLH 626
+++ L + L + + G F+ +Q + + G ++G+
Sbjct: 631 ENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIG 690
Query: 627 DF--------SISGAVKR--------ITDRNIGKVSPLL-YQLRFIYNELVAQQLEKHMQ 669
D I +K+ I + ++ P LR + V + L
Sbjct: 691 DSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARD 750
Query: 670 DIELPAIKFASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASH 729
A K S+ + M+ S +K + ++Q I +GQQ V G+ G H
Sbjct: 751 KTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQ-NVEGKRIPFGFKHRTLPH 809
Query: 730 FKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKN 789
F +K DY + G ++ + GL P E H++ RE ++ ++ +E G + +
Sbjct: 810 F-IKDDYGPES-----RGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRR 863
Query: 790 LMAILRDVVVCYDGTVRNVCSNSIIQFEYG 819
L+ + V+V YD TVRN N ++Q YG
Sbjct: 864 LIKSMESVMVKYDATVRNSI-NQVVQLRYG 892
>Q2PYS8_9FUNG (tr|Q2PYS8) DNA-directed RNA polymerase (Fragment) OS=Rozella
allomycis GN=RPB1 PE=3 SV=1
Length = 809
Score = 177 bits (448), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 149/556 (26%), Positives = 245/556 (44%), Gaps = 69/556 (12%)
Query: 314 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLVDE 373
+++ + K FS+R+VIT D +++VG+P IA+ +T+ E V +N+ YLQKLV+
Sbjct: 69 RLRGNLMGKRVDFSARTVITPDPNLSLDQVGVPRTIAKTLTYPEIVTPYNIEYLQKLVNN 128
Query: 374 NLCLAYKEGVSTYSLREGS-------KGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHS 426
+ + Y +R+ K L+PG +V R I DGD+V NR P+ HK S
Sbjct: 129 G---PTEHPGARYVVRDDGNRIDLRFKTDVVLQPGYLVERHINDGDVVLFNRQPSLHKMS 185
Query: 427 LQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSS 486
+ + + T ++N + P ADFDGD ++L PQS+ AKAE+VEL V Q++S
Sbjct: 186 MMGHRIKVMPYSTFRLNLSVTTPYNADFDGDEMNLHIPQSVEAKAELVELALVPTQIVSP 245
Query: 487 HXXXXXXXXXXXXXXXXXXXVKK-GFMDRAAANQMAMFLSL---PLPQPALLKAGSGDCY 542
++ F+++A + M+L LP+P +LK
Sbjct: 246 QSNKPCMGIVQDTLCGVRKFTRRESFLNKAMVMNIVMWLPSWEGKLPRPCILKPVP---L 302
Query: 543 WTSTQILQCALPLSFDCTG-----------------GRYLIRESDIL-GFDLGRDVLPAV 584
W+ QI +P +C + LI + +++ G + V PA
Sbjct: 303 WSGKQIFSMIIPKGVNCVTFHSTHPDNEYSDISPGDTKVLIEDGELISGIVCKKTVGPAA 362
Query: 585 INEIAASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHDFSISGAVKRITDRNIGK 644
I ++ G + A FF+ +Q + + NGFS+G+ D R T +NI +
Sbjct: 363 GGLIHV-IYNEHGSEVAKQFFNGVQTVVNNWLLINGFSIGIGD----TIADRQTMKNINE 417
Query: 645 VSPLLYQ---------------------LRFIYNELVAQQLEKHMQDIELPAIKFASKSS 683
+ + LR + V + L K A + +
Sbjct: 418 TIAIAKEEVKATIQQAQKGLLSCEPGMTLRETFESKVNKSLNKARDSAGKSAQTSLKEQN 477
Query: 684 RLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPS 743
+ M+ + SK + ++Q +GQQ V G+ G HF GD P
Sbjct: 478 NVKQMVVAGSKGSYINISQMTACVGQQ-NVEGKRIPFGFRYRTLPHFT-----KGDYGPE 531
Query: 744 AEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDG 803
+ G ++ + GL P E H++ RE ++ ++ +E G + + L+ L DV++ YDG
Sbjct: 532 SR-GFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRKLVKALEDVMIKYDG 590
Query: 804 TVRNVCSNSIIQFEYG 819
TVRN IIQF+YG
Sbjct: 591 TVRNALG-EIIQFKYG 605
>H2Z9E0_CIOSA (tr|H2Z9E0) DNA-directed RNA polymerase (Fragment) OS=Ciona
savignyi PE=3 SV=1
Length = 1748
Score = 177 bits (448), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 205/859 (23%), Positives = 349/859 (40%), Gaps = 112/859 (13%)
Query: 45 NPFLGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKM 104
+P G+ RC++C S C GHFG+IEL P++H +++ K+L VC C ++
Sbjct: 57 DPRQGVVDRMSRCQTCA-SNMTDCPGHFGHIELARPVFHVGFLTKTIKILRCVCYYCSRL 115
Query: 105 -------KKTKFPSSSSGLAQRLLS---PCCQEPNAAQ----------VSIRE----VKT 140
K + + S G ++ L+ C+ N + V R+ K
Sbjct: 116 LVEKGNPKIRQIMAKSKGQPRKRLAHVYELCKGKNICEGGEEMDNTFDVQQRDEDEPRKV 175
Query: 141 GDGAC-YLVLKVSKSKMQ-DGFWRFLDKYGYRYEVDHTRALLPCE-VMEMIKRFPLETKK 197
G G C K+ ++ M+ W+ +++ + + ++ E V E+ KR E
Sbjct: 176 GHGGCGRYQPKIRRNGMELVAEWKHVNE-----DSQEKKIVVSAERVHEIFKRISDEESD 230
Query: 198 KLAGKGYFPQDGYVIK-YLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEVIRSS 256
L F + ++I +PVPP C+ KL ++ +
Sbjct: 231 ILGMDPRFARPEWMINTVIPVPPLCVRPSVTMGGTSARSQDD---LTHKLADIIKANQQL 287
Query: 257 RSGEPNFESHQVEANDLQSVVDQYLQIRGCAKPARDIETHFGVNKELSDASN-------- 308
+ E N + + D++ + QY C D+ GV K L +
Sbjct: 288 KRNEQNGTASHIILEDVKLL--QYHVATLCDN---DMP---GVPKALQKSGRPLKSIKQR 339
Query: 309 -KAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYL 367
KA +++ + K FS+R+VIT D +I+EVG+P IA +T+ E V N+ +
Sbjct: 340 LKAKEGRIRGNLMGKRVDFSARTVITPDPNLKIDEVGVPRSIACNLTYPEIVTPFNIDRM 399
Query: 368 QKLVDEN------LCLAYKEGVSTYSLREGSK-GHTYLKPGQIVHRRIMDGDIVFINRPP 420
Q+LV ++G LR K +L+ G V R I DGD++ NR P
Sbjct: 400 QELVRRGNNQYPGAKYIIRDGGDRIDLRYHPKPSDLHLQVGYKVERHIKDGDVIVFNRQP 459
Query: 421 TTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVE 480
T HK S+ V + T ++N + P ADFDGD +++ PQ++ +AE+++L V
Sbjct: 460 TLHKMSMMGHKVRVLPWSTFRMNLSVTTPYNADFDGDEMNMHVPQTMETRAEILQLAMVN 519
Query: 481 KQLLSSHXXXXXXXXXXXXXXXXXXXVKK-GFMDRAAANQMAMFLS---LPLPQPALLKA 536
+ +++ K+ F+++A + M+L LPQPA+LK
Sbjct: 520 RMIITPQSNRPVMGIVQDTLTAVRKMTKRDSFIEKADFMNLLMYLGDWDGYLPQPAILKP 579
Query: 537 GSGDCYWTSTQILQCALPLSFDC------------TG---------GRYLIRESDILGFD 575
WT QI +P +C TG R L+ +L
Sbjct: 580 KP---LWTGKQIFSLIIPPGINCIRNHSTHPDGEDTGPYKHISPGDTRVLVENGILLSGI 636
Query: 576 LGRDVLPAVINEIAASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHDFSISGAVK 635
+ + L + V K F+ +Q + + G S+G+ D
Sbjct: 637 ICKKSLGTSAGSLCHVVALEKSADVCREFYSNIQTVVNNWLMIEGHSIGIGDTIADAQTY 696
Query: 636 RITDRNIGKVSPLLYQLRF---IYN--------ELVAQQLEKHMQDIELPAIKFASKS-- 682
+ I K + + + IYN + Q+ + + D A KS
Sbjct: 697 QDIQNQIRKAKQEVIERKLTKKIYNPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLS 756
Query: 683 --SRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDG 740
+ M+ + SK + ++Q I +GQQ V G+ G HF +K DY
Sbjct: 757 DFNNFKAMVVAGSKGSKINISQVIAVVGQQ-NVEGKRIPFGFRHRTLPHF-IKDDYG--- 811
Query: 741 YPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVC 800
P A G ++ + GL P E H++ RE ++ ++ +E G + + L+ + V+V
Sbjct: 812 -PEAR-GFVENSYLAGLTPTEFYFHAMGGREGLIDTAVKTAETGYIQRRLVKAMEAVMVR 869
Query: 801 YDGTVRNVCSNSIIQFEYG 819
YDGT+R C++ +IQ YG
Sbjct: 870 YDGTIRQ-CNDYMIQLCYG 887
>A1YIB5_9FUNG (tr|A1YIB5) DNA-directed RNA polymerase (Fragment) OS=Mucor
hiemalis GN=RPB1 PE=3 SV=1
Length = 1009
Score = 176 bits (447), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 201/835 (24%), Positives = 336/835 (40%), Gaps = 108/835 (12%)
Query: 74 YIELPVPIYHPSHVSELKKMLSLVCLNCLKMK-----------------KTKFPSSSSGL 116
+IEL P+YH ++++KK+L VC +C K+K KTK + L
Sbjct: 1 HIELAKPVYHIGFLTKVKKILECVCFHCSKLKVDETNPRFIRAKKITDAKTKL-RAVWDL 59
Query: 117 AQRLLSPCCQEPNAAQVSIREV--------KTGDGACYLVLKVSKSKMQDGFWRFLDKYG 168
A+ ++ C+ + A+ + E K+ G C + + + +F G
Sbjct: 60 AKTKMT--CEGSDEAEDGLEEKEEFDNGKRKSTHGGCGYKQPLIRKDGLKLYAQFRANAG 117
Query: 169 YRYEVDHTRALLPCEVMEMIKRFPLETKKKLAGKGYFPQDGYVIK-YLPVPPNCLXXXXX 227
+ + L +V++++K + + + F + ++I LPVPP +
Sbjct: 118 DDNGGEGRQQLTAAKVLQILKNISDQDIRDMGLSEEFARPEWMITTVLPVPPPQVRPSIQ 177
Query: 228 XXXXXXXXXXXXXTFLRKLLRKVEVIRSSRSGEPNFESHQVEANDLQSVVDQYL------ 281
L V R G P + E LQ + Y+
Sbjct: 178 MDGTSRGEDDLTHKLSDVLKANANVRRCESEGAPVHVVQEFE-QLLQFHIATYMDNDIAG 236
Query: 282 QIRGCAKPARDIETHFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRIN 341
Q + K R +++ A K +++ + K FS+R+VITGD ++
Sbjct: 237 QPQALQKSGRPLKS--------IRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLNLD 288
Query: 342 EVGIPHEIAQRITFEERVNSHNMCYLQKLVDENLCLAYKEGVSTYSLREGSK-------- 393
+VG+P IA+ +T+ E V +N+ LQ LV N L + + Y +R+ +
Sbjct: 289 QVGVPRSIARNLTYPEIVTPYNIDKLQALV-RNGPLEHPG--AKYVIRDNGERIDLRYRK 345
Query: 394 --GHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLG 451
G L+ G V R I D D+V NR P+ HK S+ V + T ++N + P
Sbjct: 346 RAGEIPLQYGYRVERHINDDDVVIFNRQPSLHKMSMMGHRVKVMPYSTFRLNLSVTSPYN 405
Query: 452 ADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHXXXXXXXXXXXXX-XXXXXXVKKG 510
ADFDGD ++L PQSL +AEV E+ V KQ++S ++
Sbjct: 406 ADFDGDEMNLHVPQSLETRAEVTEICMVPKQIVSPQSNKPVMGIVQDTLCGIRKFTLRDC 465
Query: 511 FMDRAAANQMAMFLSL---PLPQPALLKAGSGDCYWTSTQILQCALPLSFDCT------- 560
FM + + M++ +P PA+LK WT QI+ +P +C
Sbjct: 466 FMTKDLVMNIVMWVPSWDGYIPPPAILKPKP---MWTGKQIVSMVIPKGINCQTFHSTHP 522
Query: 561 ----------GGRYLIRESDILGFDLGRDVLPAVINEIAASVFFGKGPQEALNFFDVLQP 610
R +I +++ + + + + ++ GP+ A NF Q
Sbjct: 523 DGESTLISPGDTRVIIENGELICGIVCKKTVGTAGGGLIHTIMNELGPEAAKNFLGGTQQ 582
Query: 611 FLMECIFSNGFSVGLHDF------------SISGAVKRITDRNIG------KVSPLLYQL 652
+ + NGFS+G+ D IS A +R+ + I +V P + L
Sbjct: 583 VVNYWLLQNGFSIGIGDTIADKVSMATITNIISQAKQRVQEVIITAQQDKLEVQPGM-TL 641
Query: 653 RFIYNELVAQQLEKHMQDIELPAIKFASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLF 712
R + V Q L K D A + + + M+ S SK + ++Q +GQQ
Sbjct: 642 RESFEAKVNQTLNKARDDAGKMAQNSLKEDNNVKQMVISGSKGSFINISQMSACVGQQ-N 700
Query: 713 VRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREI 772
V G+ G HF D + G ++ + GL P E H++ RE
Sbjct: 701 VEGKRIPYGFKFRTLPHF------SKDDHSPESRGFVENSYLRGLTPTEFFFHAMGGREG 754
Query: 773 MVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGLKAGDNAS 827
++ ++ +E G + + L+ L DV+V YDGTVRN + II+F YG D S
Sbjct: 755 LIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGD-IIEFCYGEDGMDALS 808
>Q4P7Q0_USTMA (tr|Q4P7Q0) DNA-directed RNA polymerase OS=Ustilago maydis (strain
521 / FGSC 9021) GN=UM03863.1 PE=3 SV=1
Length = 1774
Score = 176 bits (447), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 143/554 (25%), Positives = 242/554 (43%), Gaps = 53/554 (9%)
Query: 314 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLVDE 373
+++ + K FS+R+VITGD ++EVG+P IA+ +T+ ERV +N +L +LV
Sbjct: 349 RLRGNLMGKRVNFSARTVITGDPLLELDEVGVPKSIARNLTYPERVTPYNRAWLSELVRN 408
Query: 374 N------LCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSL 427
++ L+ + L+PG IV R + DGD + NR P+ HK S+
Sbjct: 409 GPNDYPGAKYVIRDTGERIDLKYNRRSDMALQPGWIVERHLKDGDYILFNRQPSLHKMSM 468
Query: 428 QALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSH 487
+ + + D T ++N + P ADFDGD ++L PQS +AE+ ++ V +Q++S
Sbjct: 469 MSHRIKLMDYSTFRLNLSVTPPYNADFDGDEMNLHVPQSEETRAELSQIAWVPRQIVSPQ 528
Query: 488 XXXXXXXXXXXXX-XXXXXXVKKGFMDRAAANQMAMFLS---LPLPQPALLKAGSGDCYW 543
++ +D Q+ ++++ +P P +LK YW
Sbjct: 529 ANKPVMGIVQDTLCGIRKFSLRDCLLDYQQVQQVLLWVADWDGVVPMPCILKPKP---YW 585
Query: 544 TSTQILQCALPLSFDC--------------TGGRYLIRESDILGFDLGRDVLPAVINEIA 589
+ QIL +P + G Y I +I+ + + V+ A +
Sbjct: 586 SGKQILSMCIPKGINVFLDKDKGLKNNFLKDDGVY-IENGEIMYGVINKKVVGASAGGLI 644
Query: 590 ASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHDFSISGAVKRITDRNI--GKVSP 647
+F KGP FF +Q + + NGFS+G+ D A ++ I K +
Sbjct: 645 HIIFREKGPVVCKRFFSGVQRVVNFWLLHNGFSIGIGDTVADKATTDSINQTIAAAKAAV 704
Query: 648 LLY---------------QLRFIYNELVAQQLEKHMQDIELPAIKFASKSSRLGDMIDSK 692
+ Y LR + V + L + D+ A + + M+ S
Sbjct: 705 MDYIKYARHDWLKVEAGMTLRESFEANVNRVLNQARDDVGNHAETSLPDFNNVKQMVVSG 764
Query: 693 SKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGC 752
SK + ++Q +GQQ V G+ G HF D + G ++
Sbjct: 765 SKGSFINISQMSACVGQQ-SVEGKRIPFGFRHRSLPHFT------KDDFTPESRGFVENS 817
Query: 753 FFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNS 812
+ GL E H+++ RE ++ ++ +E G + + L+ L DV+VCYDGTVRN +N+
Sbjct: 818 YLRGLTAQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMVCYDGTVRN-STNN 876
Query: 813 IIQFEYGLKAGDNA 826
+IQF YG D A
Sbjct: 877 VIQFAYGEDGIDGA 890
>A1YIB3_9FUNG (tr|A1YIB3) DNA-directed RNA polymerase (Fragment) OS=Capniomyces
stellatus GN=RPB1 PE=3 SV=1
Length = 1024
Score = 176 bits (447), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 218/861 (25%), Positives = 351/861 (40%), Gaps = 144/861 (16%)
Query: 74 YIELPVPIYHPSHVSELKKMLSLVCLNC--LKMKKTKFPS-------SSSGLAQRLLSPC 124
+IEL P+YHP + ++KK+L VC C LK +T+ P +S +++
Sbjct: 1 HIELARPVYHPGFIIKVKKILESVCWYCSRLKSDETE-PGFQIAQKVKNSNRRMKMIWEI 59
Query: 125 CQEPN----AAQVSIREVKTG-----------------------DGAC---YLVLKVSKS 154
C+ +A+V REV G G C V +
Sbjct: 60 CKTRTMCEASAEVDEREVNIGVGEEERNRETVDGMVGGGKRVRGHGGCGHRQPVFRKEGL 119
Query: 155 KMQDGFWRFLDKYGYRYEVDHTRALLPCEVMEMIKRFPLETKKKLAGKGYFPQ-DGYVIK 213
K+ F + + G + + L +V++++K+ E + F + D VI
Sbjct: 120 KLSAVFKGVVGEEGV---TEGKQGLSVTQVLQVLKKISREDAVAMGLNVEFARPDWLVIT 176
Query: 214 YLPVPPNCLXXXXXXXXXXXXXXXXXXTF-LRKLLRKVEVIRSSR-SGEP-----NFES- 265
+PV P + T+ L +L+ +RS G P FES
Sbjct: 177 VMPVAP--MSVRPSIQVDATRQSEDDLTYKLNDILKANARVRSCELEGAPLHIIEEFESL 234
Query: 266 ---HQVE-ANDLQSVVDQYLQIRGCAKPARDIETHFGVNKELSDASNKAWLDKMKSLFIS 321
H N+ S + Q LQ G +P + I K +++ +
Sbjct: 235 LQFHVATFMNNELSGLPQALQKSG--RPIKSIRARL-----------KGKEGRLRGNLMG 281
Query: 322 KGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLV----DENLCL 377
K FS+R+VI GD I++VG+P IA+ +T+ E V +N+ LQ++V +E+
Sbjct: 282 KRVDFSARTVIAGDPNIEIDQVGVPRSIAKNLTYPEVVTPYNIDKLQEMVQNGPNEHPGA 341
Query: 378 AY--KEGVSTYSLREGSKGHTY-LKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALVVYI 434
Y ++ LR +G L+ G V R +MD D+V NR P+ HK S+ V +
Sbjct: 342 KYVIRDSGERIDLRYSKRGGDIPLQIGYRVERNLMDDDVVIFNRQPSLHKMSMMGHRVKV 401
Query: 435 HDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHXXXXXXX 494
T ++N + P ADFDGD ++L PQS +AE+ EL V KQ++S
Sbjct: 402 MPYSTFRLNLSVTSPYNADFDGDEMNLHLPQSEETRAEIRELCMVPKQIVSPQANKPVMG 461
Query: 495 XXXXXXXXXXXXVKKGFMDRAAANQMAMFLSLP-----LPQPALLKAGSGDCYWTSTQIL 549
K+ + R M++ L +P +P P +LK W+ QI
Sbjct: 462 IVQDTLCALLMFTKRDTLMRLDM-VMSLLLKVPGWDGLIPTPCILKP---QPLWSGKQIF 517
Query: 550 QCALPLSFDCTG-----------------GRYLIRESDILGFDLGRDVLPAVINEIAASV 592
+P +C R +I ++L + + + AV I +
Sbjct: 518 SLIIPKGINCYTFFKDHPDNETAWCSPGDSRVVIENGELLSGIICKQTVGAVRGGIVHVI 577
Query: 593 FFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHDFSISGAVKRITDRNIGKVSPLLYQL 652
F G + A FF Q + + SNGFS+G+ D +I+ D + V ++ +
Sbjct: 578 FNELGSEAAKIFFGGTQRVVNLWMLSNGFSIGIGD-TIA------DDSAMESVGNIITES 630
Query: 653 RFIYNELVAQQLEKHMQ---------------DIEL-PAIKFASKS--SRLGD------M 688
+E++ +E + ++EL A A KS +RL + M
Sbjct: 631 YMRVDEMIKDTIEDRLDCLPGMTLKETFESGTNLELNRARDLAGKSVQTRLKECNNVRKM 690
Query: 689 IDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGL 748
+ S SK + V+Q +GQQ V GR G HF D Y G
Sbjct: 691 VVSGSKGSYINVSQMTAAVGQQ-NVEGRRIPFGFRNRTLPHFT------KDDYSPQSRGF 743
Query: 749 LKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNV 808
++ + GL P E H++ RE ++ ++ +E G + + L+ L D++V YDGTVRN
Sbjct: 744 VENSYLRGLTPQEFYFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTVRNS 803
Query: 809 CSNSIIQFEYGLKAGDNASYL 829
SII+F YG G +A YL
Sbjct: 804 LG-SIIEFAYG-HDGMDAGYL 822
>C1GX38_PARBA (tr|C1GX38) DNA-directed RNA polymerase OS=Paracoccidioides
brasiliensis (strain ATCC MYA-826 / Pb01) GN=PAAG_03412
PE=3 SV=1
Length = 1425
Score = 176 bits (447), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 210/860 (24%), Positives = 350/860 (40%), Gaps = 131/860 (15%)
Query: 48 LGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKMKKT 107
+G+ + G C++CG C GHFG++ L +P +H + + +L +C +C +
Sbjct: 69 MGISSKSGTCDTCGGG-LQICSGHFGHVRLVLPAFHVGYFKLVISILQEICKDCSHILLP 127
Query: 108 KFPSSSSGLAQRLLSPCCQEPNAAQV--SIREVKTGDGACY-------LVLKVSKSKMQD 158
+ P S L + L P Q+ I E CY +V K S ++
Sbjct: 128 E-PERRSFLKE-LRRPGIDNLRRMQIVKKINERCRKTRTCYNCNAINGVVKKAGTSALKI 185
Query: 159 GFWRFLDKYGYRYEVDHTRALLPCEVMEMIKRFPLETKKKLAGKGYFPQDG----YVIKY 214
+F + ++ D L P V+++ +R E + L G P + ++ +Y
Sbjct: 186 SHEKFRIEKHFKKAHDD---LHPLRVLKLFRRISNEDCELL---GLNPAEARPEVFLWQY 239
Query: 215 LPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRKV-EVIRSSRSGEPNFESHQVEANDL 273
+P PP C+ L K+ ++I+S+ N ++ + +
Sbjct: 240 IPAPPVCIRPSVGQEAASTED---------DLTAKLGDIIQSNM----NLKNALNKGAPV 286
Query: 274 QSVVD--QYLQIRGCAKPARDIETHFGVNKELSDASNKAWLDKMKS---LFISKGSG--- 325
Q++++ ++Q++ D+ G+ K + + ++K F SG
Sbjct: 287 QTIIECWDHMQLQLAVYINSDVP---GLQKADFGKPIRGFCQRLKGKQGRFRGNLSGKRV 343
Query: 326 -FSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLVDE--------NLC 376
FSSR+VI+ D RI+EV +P +A +T+ E+V +N L++ V N
Sbjct: 344 DFSSRTVISPDPNLRIDEVAVPILVAMNMTYPEQVTRYNKDKLRQCVRNGTKTWPGANYV 403
Query: 377 LAYKEGVSTYSLREGSKG--HTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALVVYI 434
L + +L+ G+ L+ G IV R I DGDIV NR P+ HK S+ + V +
Sbjct: 404 LKKSQNFK-MNLKFGNPNLIANELEEGDIVERHIEDGDIVLFNRQPSLHKLSILSHFVKV 462
Query: 435 HDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHXXXXXXX 494
T ++N +C P ADFDGD ++L PQ+ A+AE +EL V+ L++
Sbjct: 463 RPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKNNLVTPKNGEPIIS 522
Query: 495 XXXXXXXXXXXXVKKG-FMDRAAANQMAMFLSLP-----LPQPALLKAGSGDCYWTSTQI 548
K F DR Q+ +++ LP LP P++LK WT Q+
Sbjct: 523 AIQDFITAAYMLSSKNVFYDRKTFTQVCLYMLLPGTRFDLPPPSILKP---QMLWTGKQV 579
Query: 549 LQCAL-------------------------PLSFDCTGGRYLIRESDILGFDLGRDVLPA 583
+ P D IR S+++ + + + +
Sbjct: 580 FNILMRPNKDSPVLVNLDAACREFKAPKGTPRDLDANDRWLCIRNSEVMCGVMDKYTIGS 639
Query: 584 VINEIAASVFF----GKGPQEALNFFDVLQPFLMECIFSNGFSVGLHDFSISGAVKRITD 639
+ SVF+ GP A + L I GFS+G+ D R+ +
Sbjct: 640 GKKD---SVFYVMLRDYGPAIAAEGMNRLSRLCARWITDLGFSIGITDVYPG---DRLLE 693
Query: 640 RNIGKVSPLLYQLRFIYNELVAQQLEK------HMQDIELPAIKFASKSSRLGD------ 687
V Q + + + LEK M + + + + GD
Sbjct: 694 EKKELVEHAYVQCDEVIQKFKSGNLEKAPGCDEQMTMENIISGILSKVRQQAGDLCISEL 753
Query: 688 --------MIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGD 739
M S SK + V Q + +GQQ+ + G+ G + HF
Sbjct: 754 SRWNTPLIMATSGSKGSNINVAQMVALVGQQI-IGGQRVQDGFQDRTLPHFPKHAR---- 808
Query: 740 GYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVV 799
P A+ G ++ FF GL P E L H+IS RE +V ++ +E G + + LM L D+
Sbjct: 809 -QPPAK-GFVQNSFFSGLSPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLST 866
Query: 800 CYDGTVRNVCSNSIIQFEYG 819
YDGTVRN S+SI+QF+YG
Sbjct: 867 RYDGTVRN-SSSSIVQFQYG 885
>A1YIB1_9BASI (tr|A1YIB1) DNA-directed RNA polymerase (Fragment) OS=Phragmidium
sp. MB GN=RPB1 PE=3 SV=1
Length = 1013
Score = 176 bits (447), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 145/554 (26%), Positives = 248/554 (44%), Gaps = 52/554 (9%)
Query: 314 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLVDE 373
+++ + K FS+R+VITGD ++++VG+P+ IA+ +T+ ERV +N+ YLQ+LV +
Sbjct: 272 RLRGNLMGKRVDFSARTVITGDPNLQLDQVGVPYSIARNLTYPERVTPYNISYLQELV-Q 330
Query: 374 NLCLAY-------KEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHS 426
N Y ++ L+ + T+L+ G IV R + DGD V NR P+ HK S
Sbjct: 331 NGPTEYPGARYVIRDTGDRIDLKYNKRADTFLQYGWIVERHLKDGDYVLFNRQPSLHKMS 390
Query: 427 LQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSS 486
+ A + + T ++N + P ADFDGD ++L PQS +AE+ ++ V + ++S
Sbjct: 391 MMAHRIKLMPYSTFRLNLSVTPPYNADFDGDEMNLHVPQSEETRAELAQIAWVPRNIVSP 450
Query: 487 HXXXXXXXXXXXXX-XXXXXXVKKGFMDRAAANQMAMFLS---LPLPQPALLKAGSGDCY 542
++ FMDR + +++ +P PA+LK
Sbjct: 451 QANKPVMGIVQDTLCGVRKFTLRDCFMDRDFVQNILLWVPGWDGVVPPPAILKPKP---L 507
Query: 543 WTSTQILQCALP------------LSFDCTGGRYLIRESDILGFDLGRDVLPAVINEIAA 590
WT QIL +P S I + +I+ + + + A I
Sbjct: 508 WTGKQILSMCIPKGINLFRDDENQTSIPVADKGMWIEDGEIIYGVVDKKTVGASQGGIIH 567
Query: 591 SVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHDFS------------ISGAVKRIT 638
+F KGP+ F +Q + + +GFS+G+ D IS A + ++
Sbjct: 568 VIFREKGPEVTRGLFSGIQMVVNYWLLHHGFSIGIGDTVPDKATMEAITNFISDAKREVS 627
Query: 639 DRNI-GKVSPLLYQLRFIYNELVAQQLEKHMQDIELPAIKFASKSSR----LGDMIDSKS 693
D I + LL + E ++ + + A + A +S + + M+ + S
Sbjct: 628 DVIIAAQEDKLLPEPGMTIRESFEAKVNRALNMARDNAGRSAEQSLKDDNNVKQMVTAGS 687
Query: 694 KSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGCF 753
K + ++Q +GQQ V G+ G HF D Y G ++ +
Sbjct: 688 KGSFINISQMSACVGQQ-SVEGKRIPYGFKYRTLPHFT------KDDYSPESRGFVENSY 740
Query: 754 FHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSI 813
GL P E H+++ RE ++ ++ +E G + + L+ L DV+V YDGTVRN + I
Sbjct: 741 LRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLLKALEDVMVTYDGTVRNSLGD-I 799
Query: 814 IQFEYGLKAGDNAS 827
+QF YG D +
Sbjct: 800 VQFVYGEDGVDGGT 813
>G0TZQ4_TRYVY (tr|G0TZQ4) DNA-directed RNA polymerase (Fragment) OS=Trypanosoma
vivax (strain Y486) GN=TVY486_0806890 PE=3 SV=1
Length = 1068
Score = 176 bits (447), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 152/575 (26%), Positives = 249/575 (43%), Gaps = 56/575 (9%)
Query: 300 NKELSDASN--KAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEE 357
NK+L + K +++ + K FS+R+VITGD ++EVG+P +A +TF E
Sbjct: 323 NKKLKSLTERLKGKYGRLRGNLMGKRVDFSARTVITGDPNIDVDEVGVPFSVAMTLTFPE 382
Query: 358 RVNSHNMCYLQKLVDENLC-----LAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGD 412
RV++ N L + V + + + G +T + L G +V R +++GD
Sbjct: 383 RVSAVNRKRLTEFVRRTVYPSANYVHHPNGTTTKLALLRDRTKVTLNVGDVVERHVINGD 442
Query: 413 IVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAE 472
+V NR PT H+ S+ V + + +T ++N P ADFDGD ++L PQSL KAE
Sbjct: 443 VVLFNRQPTLHRMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAE 502
Query: 473 VVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXV-KKGFMDRAAANQMAMFLSL-PLPQ 530
++E+ V K +S + K F+D+ +A++L L LP
Sbjct: 503 LIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFLDKYFVQSVALWLDLWQLPI 562
Query: 531 PALLKAGSGDCYWTSTQILQCALP-----------LSFDCTGGRYLIRESDILGFDLGRD 579
PA+LK WT Q+ LP F +IR +L + +
Sbjct: 563 PAILKPYP---LWTGKQVFSLILPEVNHPAVQQVKPPFPHNDSSVVIRRGQLLCGPITKG 619
Query: 580 VLPAVINEIAASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHD-FSISGAVKRIT 638
++ A + +F G E F + +Q + + GFSVG+ D + +G ++++
Sbjct: 620 IVGAAPGSLIHVIFNEHGSDEVARFINGVQRVTTYFLLNFGFSVGVQDTVADAGTLRQMN 679
Query: 639 D------------------RNIGKVSPLLYQLRFIYNELVAQQLEKHMQDIELPAIKFAS 680
+ R + + + + F + V L K ++ A+
Sbjct: 680 EVLVRTRESVEKIGAAANNRTLNRKAGMTLLQSFEAD--VNSALNKCREEAAKKALSNVR 737
Query: 681 KSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDG 740
+++ MI++ SK + Q F+GQQ V G G HF L D
Sbjct: 738 RTNSFKVMIEAGSKGTDLNICQIAVFVGQQ-NVAGSRIPFGFRRRTLPHFML------DD 790
Query: 741 YPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVC 800
Y G+ + GL P E H+++ RE ++ ++ S+ G L + L+ L DV
Sbjct: 791 YGETSRGMANRGYVEGLKPHEFFFHTMAGREGLIDTAVKTSDTGYLQRKLIKALEDVHAA 850
Query: 801 YDGTVRNVCSNSIIQFEYGLKAGDNASY----LFP 831
YDGTVRN ++ +IQF YG D A LFP
Sbjct: 851 YDGTVRN-ANDELIQFMYGEDGLDGARIEGGQLFP 884
>J9NW09_CANFA (tr|J9NW09) DNA-directed RNA polymerase OS=Canis familiaris
GN=POLR2A PE=3 SV=1
Length = 1789
Score = 176 bits (446), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 211/870 (24%), Positives = 346/870 (39%), Gaps = 131/870 (15%)
Query: 45 NPFLGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKM 104
+P G+ GRC++C +C GHFG+IEL P++H + + K+L VC C K+
Sbjct: 59 DPRQGVIERTGRCQTCA-GNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKL 117
Query: 105 KKTKFPSSSSGLAQRLLSPCCQEPNAAQVSIREVKTGDGAC---------YLVLK----- 150
S++ + +L+ +P + ++ G C + V +
Sbjct: 118 ----LVDSNNPKIKDILAKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDE 173
Query: 151 -VSKSKMQDGFWRF--------LDKYGYRYEVDH----TRALL-PCEVMEMIKRFPLETK 196
++K K G R+ L+ Y V+ + LL P V E+ KR E
Sbjct: 174 DLTKEKGHGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEC 233
Query: 197 KKLAGKGYFPQDGY-VIKYLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEVIRS 255
L + + + + ++ LPVPP + KL V++
Sbjct: 234 FVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDD----LTHKLADIVKINNQ 289
Query: 256 SRSGEPNFESHQVEANDLQ-------SVVDQYLQ--IRGCAKPARDIETHFGVNKELSDA 306
R E N + V A D++ ++VD L R K R +++ + + L
Sbjct: 290 LRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKS---LKQRL--- 343
Query: 307 SNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCY 366
K +++ + K FS+R+VIT D I++VG+P IA +TF E V N+
Sbjct: 344 --KGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDR 401
Query: 367 LQKLVDENLCLAYKEGVSTYS--------------LREGSK-GHTYLKPGQIVHRRIMDG 411
LQ+LV + G S Y LR K +L+ G V R + DG
Sbjct: 402 LQELV--------RRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDG 453
Query: 412 DIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKA 471
DIV NR PT HK S+ V I T ++N + P ADFDGD ++L PQSL +A
Sbjct: 454 DIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRA 513
Query: 472 EVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKKG-FMDRAAANQMAMFLSL---P 527
E+ EL V + +++ K+ F++R + MFLS
Sbjct: 514 EIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGK 573
Query: 528 LPQPALLKAGSGDCYWTSTQILQCALPLSFDCT-----------GGRY----------LI 566
+PQPA+LK WT QI +P +C G Y ++
Sbjct: 574 VPQPAILKPRP---LWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVV 630
Query: 567 RESDILGFDLGRDVLPAVINEIAASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLH 626
+++ L + L + + G F+ +Q + + G ++G+
Sbjct: 631 ENGELIMGILCKKSLGTSAGSLVHISYLEMGHDVTRLFYSNIQTVINNWLLIEGHTIGIG 690
Query: 627 DF--------SISGAVKR--------ITDRNIGKVSPLL-YQLRFIYNELVAQQLEKHMQ 669
D I +K+ I + ++ P LR + V + L
Sbjct: 691 DSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARD 750
Query: 670 DIELPAIKFASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASH 729
A K S+ + M+ S +K + ++Q I +GQQ V G+ G H
Sbjct: 751 KTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQ-NVEGKRIPFGFKHRTLPH 809
Query: 730 FKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKN 789
F +K DY + G ++ + GL P E H++ RE ++ ++ +E G + +
Sbjct: 810 F-IKDDYGPES-----RGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRR 863
Query: 790 LMAILRDVVVCYDGTVRNVCSNSIIQFEYG 819
L+ + V+V YD TVRN N ++Q YG
Sbjct: 864 LIKSMESVMVKYDATVRNSI-NQVVQLRYG 892
>H0VRW6_CAVPO (tr|H0VRW6) DNA-directed RNA polymerase OS=Cavia porcellus PE=3
SV=1
Length = 1641
Score = 176 bits (446), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 211/870 (24%), Positives = 346/870 (39%), Gaps = 131/870 (15%)
Query: 45 NPFLGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKM 104
+P G+ GRC++C +C GHFG+IEL P++H + + K+L VC C K+
Sbjct: 59 DPRQGVIERTGRCQTCA-GNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKL 117
Query: 105 KKTKFPSSSSGLAQRLLSPCCQEPNAAQVSIREVKTGDGAC---------YLVLK----- 150
S++ + +L+ +P + ++ G C + V +
Sbjct: 118 ----LVDSNNPKIKDILAKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDE 173
Query: 151 -VSKSKMQDGFWRF--------LDKYGYRYEVDH----TRALL-PCEVMEMIKRFPLETK 196
++K K G R+ L+ Y V+ + LL P V E+ KR E
Sbjct: 174 DLTKEKGHGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEC 233
Query: 197 KKLAGKGYFPQDGY-VIKYLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEVIRS 255
L + + + + ++ LPVPP + KL V++
Sbjct: 234 FVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDD----LTHKLADIVKINNQ 289
Query: 256 SRSGEPNFESHQVEANDLQ-------SVVDQYLQ--IRGCAKPARDIETHFGVNKELSDA 306
R E N + V A D++ ++VD L R K R +++ + + L
Sbjct: 290 LRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKS---LKQRL--- 343
Query: 307 SNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCY 366
K +++ + K FS+R+VIT D I++VG+P IA +TF E V N+
Sbjct: 344 --KGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDR 401
Query: 367 LQKLVDENLCLAYKEGVSTYS--------------LREGSK-GHTYLKPGQIVHRRIMDG 411
LQ+LV + G S Y LR K +L+ G V R + DG
Sbjct: 402 LQELV--------RRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDG 453
Query: 412 DIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKA 471
DIV NR PT HK S+ V I T ++N + P ADFDGD ++L PQSL +A
Sbjct: 454 DIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRA 513
Query: 472 EVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKKG-FMDRAAANQMAMFLSL---P 527
E+ EL V + +++ K+ F++R + MFLS
Sbjct: 514 EIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGK 573
Query: 528 LPQPALLKAGSGDCYWTSTQILQCALPLSFDCT-----------GGRY----------LI 566
+PQPA+LK WT QI +P +C G Y ++
Sbjct: 574 VPQPAILKPRP---LWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVV 630
Query: 567 RESDILGFDLGRDVLPAVINEIAASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLH 626
+++ L + L + + G F+ +Q + + G ++G+
Sbjct: 631 ENGELIMGILCKKSLGTSAGSLVHISYLEMGHDVTRLFYSNIQTVINNWLLIEGHTIGIG 690
Query: 627 DF--------SISGAVKR--------ITDRNIGKVSPLL-YQLRFIYNELVAQQLEKHMQ 669
D I +K+ I + ++ P LR + V + L
Sbjct: 691 DSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARD 750
Query: 670 DIELPAIKFASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASH 729
A K S+ + M+ S +K + ++Q I +GQQ V G+ G H
Sbjct: 751 KTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQ-NVEGKRIPFGFKHRTLPH 809
Query: 730 FKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKN 789
F +K DY + G ++ + GL P E H++ RE ++ ++ +E G + +
Sbjct: 810 F-IKDDYGPES-----RGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRR 863
Query: 790 LMAILRDVVVCYDGTVRNVCSNSIIQFEYG 819
L+ + V+V YD TVRN N ++Q YG
Sbjct: 864 LIKSMESVMVKYDATVRNSI-NQVVQLRYG 892
>R9NXG0_9BASI (tr|R9NXG0) Uncharacterized protein OS=Pseudozyma hubeiensis SY62
GN=PHSY_000806 PE=4 SV=1
Length = 1783
Score = 176 bits (446), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 143/554 (25%), Positives = 242/554 (43%), Gaps = 53/554 (9%)
Query: 314 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLVDE 373
+++ + K FS+R+VITGD ++EVG+P IA+ +T+ ERV +N +L +LV
Sbjct: 349 RLRGNLMGKRVNFSARTVITGDPLLELDEVGVPKSIARNLTYPERVTPYNRAWLSELVRN 408
Query: 374 N------LCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSL 427
++ L+ + L+PG IV R + DGD + NR P+ HK S+
Sbjct: 409 GPNDYPGAKYVIRDTGERIDLKYNRRSDMALQPGWIVERHLKDGDYILFNRQPSLHKMSM 468
Query: 428 QALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSH 487
+ + + D T ++N + P ADFDGD ++L PQS +AE+ ++ V +Q++S
Sbjct: 469 MSHRIKLMDYSTFRLNLSVTPPYNADFDGDEMNLHVPQSEETRAELSQIAWVPRQIVSPQ 528
Query: 488 XXXXXXXXXXXXX-XXXXXXVKKGFMDRAAANQMAMFLS---LPLPQPALLKAGSGDCYW 543
++ +D Q+ ++++ +P P +LK YW
Sbjct: 529 ANKPVMGIVQDTLCGIRKFSLRDCLLDYHQVQQVLLWVADWDGVVPMPCILKPKP---YW 585
Query: 544 TSTQILQCALPLSFDC--------------TGGRYLIRESDILGFDLGRDVLPAVINEIA 589
+ QIL +P + G Y I +I+ + + V+ A +
Sbjct: 586 SGKQILSMCIPKGINVFLDKDKGLKNNFLKDDGVY-IENGEIMYGVINKKVVGASAGGLI 644
Query: 590 ASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHDFSISGAVKRITDRNI--GKVSP 647
+F KGP FF +Q + + NGFS+G+ D A ++ I K +
Sbjct: 645 HIIFREKGPVVCKRFFSGVQRVVNFWLLHNGFSIGIGDTVADKATTDSINQTIAAAKAAV 704
Query: 648 LLY---------------QLRFIYNELVAQQLEKHMQDIELPAIKFASKSSRLGDMIDSK 692
+ Y LR + V + L + D+ A + + M+ S
Sbjct: 705 MDYIKYARHDWLKVEAGMTLRESFEANVNRVLNQARDDVGNHAEASLPDFNAVKQMVVSG 764
Query: 693 SKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGC 752
SK + ++Q +GQQ V G+ G HF D + G ++
Sbjct: 765 SKGSFINISQMSACVGQQ-SVEGKRIPFGFRHRSLPHFT------KDDFTPESRGFVENS 817
Query: 753 FFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNS 812
+ GL E H+++ RE ++ ++ +E G + + L+ L DV+VCYDGTVRN +N+
Sbjct: 818 YLRGLTAQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMVCYDGTVRN-STNN 876
Query: 813 IIQFEYGLKAGDNA 826
+IQF YG D A
Sbjct: 877 VIQFAYGEDGIDGA 890
>H2Z9E3_CIOSA (tr|H2Z9E3) DNA-directed RNA polymerase OS=Ciona savignyi PE=3 SV=1
Length = 1806
Score = 176 bits (446), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 206/865 (23%), Positives = 350/865 (40%), Gaps = 118/865 (13%)
Query: 45 NPFLGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKM 104
+P G+ RC++C S C GHFG+IEL P++H +++ K+L VC C ++
Sbjct: 54 DPRQGVVDRMSRCQTCA-SNMTDCPGHFGHIELARPVFHVGFLTKTIKILRCVCYYCSRL 112
Query: 105 -------KKTKFPSSSSGLAQRLLS---PCCQEPNAAQ----------VSIRE----VKT 140
K + + S G ++ L+ C+ N + V R+ K
Sbjct: 113 LVEKGNPKIRQIMAKSKGQPRKRLAHVYELCKGKNICEGGEEMDNTFDVQQRDEDEPRKV 172
Query: 141 GDGAC-YLVLKVSKSKMQ-DGFWRFLDKYGYRYEVDHTRALLPCE-VMEMIKRFPLETKK 197
G G C K+ ++ M+ W+ +++ + + ++ E V E+ KR E
Sbjct: 173 GHGGCGRYQPKIRRNGMELVAEWKHVNE-----DSQEKKIVVSAERVHEIFKRISDEESD 227
Query: 198 KLAGKGYFPQDGYVIK-YLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEVIRSS 256
L F + ++I +PVPP C+ KL ++ +
Sbjct: 228 ILGMDPRFARPEWMINTVIPVPPLCVRPSVTMGGTSARSQDD---LTHKLADIIKANQQL 284
Query: 257 RSGEPNFESHQVEANDLQSVVDQYLQIRGCAKPARDIETHFGVNKELSDASN-------- 308
+ E N + + D++ + QY C D+ GV K L +
Sbjct: 285 KRNEQNGTASHIILEDVKLL--QYHVATLCDN---DMP---GVPKALQKSGRPLKSIKQR 336
Query: 309 -KAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYL 367
KA +++ + K FS+R+VIT D +I+EVG+P IA +T+ E V N+ +
Sbjct: 337 LKAKEGRIRGNLMGKRVDFSARTVITPDPNLKIDEVGVPRSIACNLTYPEIVTPFNIDRM 396
Query: 368 QKLVDEN------LCLAYKEGVSTYSLREGSK-GHTYLKPGQIVHRRIMDGDIVFINRPP 420
Q+LV ++G LR K +L+ G V R I DGD++ NR P
Sbjct: 397 QELVRRGNNQYPGAKYIIRDGGDRIDLRYHPKPSDLHLQVGYKVERHIKDGDVIVFNRQP 456
Query: 421 TTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVE 480
T HK S+ V + T ++N + P ADFDGD +++ PQ++ +AE+++L V
Sbjct: 457 TLHKMSMMGHKVRVLPWSTFRMNLSVTTPYNADFDGDEMNMHVPQTMETRAEILQLAMVN 516
Query: 481 KQLLSSHXXXXXXXXXXXXXXXXXXXVKK-GFMDRAAANQMAMFLS---LPLPQPALLKA 536
+ +++ K+ F+++A + M+L LPQPA+LK
Sbjct: 517 RMIITPQSNRPVMGIVQDTLTAVRKMTKRDSFIEKADFMNLLMYLGDWDGYLPQPAILKP 576
Query: 537 GSGDCYWTSTQILQCALPLSFDC------------TG---------GRYLIRESDILGFD 575
WT QI +P +C TG R L+ +L
Sbjct: 577 KP---LWTGKQIFSLIIPPGINCIRNHSTHPDGEDTGPYKHISPGDTRVLVENGILLSGI 633
Query: 576 LGRDVLPAVINEIAASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHDFSISGAVK 635
+ + L + V K F+ +Q + + G S+G+ D
Sbjct: 634 ICKKSLGTSAGSLCHVVALEKSADVCREFYSNIQTVVNNWLMIEGHSIGIGDTIADAQTY 693
Query: 636 RITDRNIGKVSP---------LLYQLRFIYN--------ELVAQQLEKHMQDIELPAIKF 678
+ I K L +++ IYN + Q+ + + D
Sbjct: 694 QDIQNQIRKAKQEVIEVSRFGLDFRMSKIYNPTPGNTLRQTFENQVNRILNDARDKTGSS 753
Query: 679 ASKS----SRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKC 734
A KS + M+ + SK + ++Q I +GQQ V G+ G HF +K
Sbjct: 754 AQKSLSDFNNFKAMVVAGSKGSKINISQVIAVVGQQ-NVEGKRIPFGFRHRTLPHF-IKD 811
Query: 735 DYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAIL 794
DY P A G ++ + GL P E H++ RE ++ ++ +E G + + L+ +
Sbjct: 812 DYG----PEAR-GFVENSYLAGLTPTEFYFHAMGGREGLIDTAVKTAETGYIQRRLVKAM 866
Query: 795 RDVVVCYDGTVRNVCSNSIIQFEYG 819
V+V YDGT+R C++ +IQ YG
Sbjct: 867 EAVMVRYDGTIRQ-CNDYMIQLCYG 890
>Q7XTZ3_ORYSJ (tr|Q7XTZ3) DNA-directed RNA polymerase OS=Oryza sativa subsp.
japonica GN=OSJNBa0019K04.4 PE=3 SV=2
Length = 1664
Score = 176 bits (446), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 188/696 (27%), Positives = 293/696 (42%), Gaps = 109/696 (15%)
Query: 304 SDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHN 363
+D WL K + +SK S + RS++ GD +NE+GIP +A + E+V+S+N
Sbjct: 296 TDTYGTKWL---KDIILSKRSDNAFRSIMVGDPKINLNEIGIPMGLALNLVVSEQVSSYN 352
Query: 364 M------CYLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFIN 417
C L L E L L + G + +R+ ++ L+ G I +R + DGD+V +N
Sbjct: 353 FETINLKCNLHLLTKEVL-LVRRNGNLIF-VRKANQ----LEIGDIAYRLLQDGDLVLVN 406
Query: 418 RPPTTHKHSLQALVVYIHDDHT-VKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVEL 476
PP+ H+HSL AL + + V INPL C P DFDGDC+H + PQ L ++ E+ EL
Sbjct: 407 SPPSVHQHSLIALSAKLLSTQSAVSINPLCCDPFKGDFDGDCLHGYIPQCLQSRIELEEL 466
Query: 477 FSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKKG-FMDRAAANQMAMF---LSLPLPQPA 532
+ QLL+ F+++A Q+ M +SL P P+
Sbjct: 467 VGLSGQLLNQQDGRSLVSLTHDSLAAAHQLTNADVFLEKAEFQQLQMLSSSISLT-PMPS 525
Query: 533 LLKA-GSGDCYWTSTQILQCALPLSFDCTGGRYLIRESDILGFDLGRDVLPAVINEIAAS 591
+ K+ S WT + F R + E L D
Sbjct: 526 VFKSTNSQGPLWTDLYL--------FSDHYSRRKLSEEVHLALD---------------- 561
Query: 592 VFFGKGPQEALNFFDVLQPFLMECIFSN-GFSVGLHDFSISGAVKRITDRNIGKVSPLLY 650
EA F + Q L N + G D S + T ++ + +
Sbjct: 562 --------EAEEAFQIKQILLNSVSIPNLKYYDGGDDRSNTDEQSGFTQVSLPIIRSSMT 613
Query: 651 QLRFIYNELVAQQLEKHMQDIELPAIKFASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQ 710
+ ++N+L+ K +Q ++ SK + + MI+S SK ++ K QQ +G Q
Sbjct: 614 SFKSVFNDLL-----KMVQ-------QYVSKDNSMMTMINSGSKGSVLKFVQQTACVGLQ 661
Query: 711 LFVRG---RLYSKGLLEDVASHFKLKCDYDGDGYPSA-----EYGLLKGCFFHGLDPFEE 762
L R+ S+ H C+ DG Y +++ F GL+P E
Sbjct: 662 LPASKFPFRIPSQLSCVSWNRHKSRNCEIT-DGTSECVGGQDMYAVVRNSFLDGLNPLEC 720
Query: 763 LVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGLKA 822
L+H+IS R S PGTL + LM LRD V YDGTVR+ I++F Y
Sbjct: 721 LLHAISGRANFF--SENADVPGTLTRKLMYHLRDTYVAYDGTVRSSYGQQIVRFSYDTAD 778
Query: 823 GDNASYLFPA--GEHVGVLAATAMSNPAYKAV------LDASPSSNCSWELMKEILLCKV 874
G + + G VG AA ++S AY A+ L+ SP N ++E+L C
Sbjct: 779 GMYSDHDLEGEPGAPVGSWAACSISEAAYGALDHPVNSLEDSPLMN-----LQEVLKC-- 831
Query: 875 HFRNEPIDRRVILYLNDCDCGRSYCRENAAYAVKNQLRKVSLKDTA-----------VDF 923
H +D +L+L+ Y E A+ VK+ L +V D ++F
Sbjct: 832 HKGTNSLDHTGLLFLSKHLRKYRYGFEYASLEVKDHLERVDFSDMVDTETMKIKRLRLEF 891
Query: 924 IV-----EYQQQRKRKGSEIDAGLVGHIHLDEVKLE 954
IV +Y RK+ + I + + + +K+E
Sbjct: 892 IVREIIDQYNTLRKQLNNAIPSVSISNSETLHLKME 927
>E9RHE1_9HEXA (tr|E9RHE1) DNA-directed RNA polymerase (Fragment) OS=Lepidocampa
weberi GN=RPB1 PE=2 SV=1
Length = 1558
Score = 176 bits (446), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 210/936 (22%), Positives = 364/936 (38%), Gaps = 164/936 (17%)
Query: 45 NPFLGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKM 104
+P G+ RC++C +C GHFG+I+L P+YH ++++ K L VC C K+
Sbjct: 55 DPRQGVVDRLSRCQTCA-GNMTECPGHFGHIDLAKPVYHSGFLTKIVKTLRCVCFYCSKL 113
Query: 105 -------KKTKFPSSSSGLAQRLLS-------------------------PCCQEPNAAQ 132
+ + S G ++ L+ P Q+P A
Sbjct: 114 LVSPTTPRIKEILQKSKGQPRKRLAAVYDLCKGKTICEGGDEMDLQREDDPSVQQPKRA- 172
Query: 133 VSIREVKTGDGAC-YLVLKVSKSKMQ-DGFWRFLDKYGYRYEVDHTRALLPCEVMEMIKR 190
G G C K+ ++ ++ W+ L++ ++ AL V E+ +
Sbjct: 173 --------GHGGCGRYQPKIRRAALELTAEWKHLNEDSQEKKI----ALTAERVHEIFRH 220
Query: 191 FPLETKKKLAGKGYFPQ-DGYVIKYLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRK 249
E L F + D ++ LPVPP C+ +
Sbjct: 221 ISDEECYILGMDPKFARPDWMIVTVLPVPPLCVRPAVVMFGSARNQDDLTHKLSDIIKAN 280
Query: 250 VEVIRSSRSGEPNF---ESHQVEANDLQSVVDQYL-----QIRGCAKPARDIETHFGVNK 301
E+ R+ +G E+ ++ + ++VD + ++ +P + I+
Sbjct: 281 NELKRNEETGAATHILSENVKMLQFHVATLVDNDMPGLPRAMQKSGRPLKAIKARL---- 336
Query: 302 ELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNS 361
K +++ + K FS+R+VIT D RI++VG+P IAQ +TF E V
Sbjct: 337 -------KGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTP 389
Query: 362 HNMCYLQKLV-----------------DENLCLAYKEGVSTYSLREGSKGHTYLKPGQIV 404
N+ +Q+LV DE + L + S L+ G K V
Sbjct: 390 FNIDKMQELVRRGNSQYPGAKYIIRDNDERIDLRFHPKSSDLHLQCGYK----------V 439
Query: 405 HRRIMDGDIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYP 464
R I DGD++ NR PT HK S+ V + T ++N + P ADFDGD ++L P
Sbjct: 440 ERHIRDGDLIIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSVTSPYNADFDGDEMNLHVP 499
Query: 465 QSLAAKAEVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKKG-FMDRAAANQMAMF 523
QS+ +AEV + +Q+++ K+ F+++ + M
Sbjct: 500 QSMETRAEVENIHITTRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEKEQMFNVLMH 559
Query: 524 LSL---PLPQPALLKAGSGDCYWTSTQILQCALPLSFDCT-----------GGRY----- 564
L + +PQPA+LK WT Q+ +P + + G Y
Sbjct: 560 LPIWDGKMPQPAILKPKP---LWTGKQVFSLIIPGNVNMIRTHSAHPDEEDDGPYKWISP 616
Query: 565 -----LIRESDILGFDLGRDVLPAVINEIAASVFFGKGPQEALNFFDVLQPFLMECIFSN 619
++ +++ L + L + F G + F+ +Q + +
Sbjct: 617 GDTKVMVEHGELVMGILCKKTLGTSAGSLLHICFVELGHEVCGQFYGNIQTVINNWLLLE 676
Query: 620 GFSVGLHD--------FSISGAVKRITD---RNIGKVSPLLYQ------LRFIYNELVAQ 662
G S+G+ D I +K+ + I K + + LR + V +
Sbjct: 677 GHSIGIGDSIADPQTYLEIQKTIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNR 736
Query: 663 QLEKHMQDIELPAIKFASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGL 722
L A K ++ + L M+ S SK + ++Q I +GQQ V G+ G
Sbjct: 737 ILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ-NVEGKRIPFGF 795
Query: 723 LEDVASHFKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSE 782
+ HF +K DY + G ++ + GL P E H++ RE ++ ++ +E
Sbjct: 796 RKRTLPHF-IKDDYGPES-----RGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAE 849
Query: 783 PGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGLKAGDNASYLFPAGEHVGV--LA 840
G + + L+ + V+V YDGT+RN +IQ YG AGEHV L
Sbjct: 850 TGYIQRRLIKAMESVMVHYDGTIRNSVGQ-LIQLRYGEDG--------LAGEHVEFQSLP 900
Query: 841 ATAMSNPAYKAVLDASPSSN------CSWELMKEIL 870
+SN A++ PS+ + ++MKE++
Sbjct: 901 TVKLSNRAFEKKFKFDPSNERYLRRVFTEDIMKEVM 936
>A1YIB9_ALLMA (tr|A1YIB9) DNA-directed RNA polymerase (Fragment) OS=Allomyces
macrogynus GN=RPB1 PE=3 SV=1
Length = 1008
Score = 176 bits (446), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 147/555 (26%), Positives = 242/555 (43%), Gaps = 65/555 (11%)
Query: 314 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLVDE 373
+++ + K FS+R+VITGD I++VG+P IA+ +T+ E V +N+ LQ+LV
Sbjct: 259 RLRGNLMGKRVDFSARTVITGDPNLSIDQVGVPRSIARNLTYPEIVTPYNINKLQELVHN 318
Query: 374 NLCLAYKEGVSTYSLRE----------GSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTH 423
+ + Y +R+ G+KG+ L+ G IV R + DGD++ NR P+ H
Sbjct: 319 G---PTQHPGAKYVIRDNGDRVDLRFIGAKGNLGLQYGWIVERHLDDGDVIIFNRQPSLH 375
Query: 424 KHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQL 483
K S+ V + T ++N + P ADFDGD +++ PQSL AKAE+ +L V Q+
Sbjct: 376 KMSMMGHKVKVMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSLEAKAEIQQLCMVPLQI 435
Query: 484 LSSHXXXXXXXXXXXXXXXXXXXVKK-GFMDRAAANQMAMFLSLP-----LPQPALLKAG 537
+S ++ FMD+ M + + +P +P PA++K
Sbjct: 436 ISPQSNKPVMGIVQDTLCGITKFTRRDTFMDKNMV--MNLLMWVPNWDGNVPPPAIMKPK 493
Query: 538 SGDCYWTSTQILQCALPL--------------SFDCTGG--RYLIRESDILGFDLGRDVL 581
WT QIL +P S D + G R ++ + ++L + + +
Sbjct: 494 P---LWTGKQILSLVIPKVNCITHHSTHPDDESTDISPGDTRVIVEDGELLAGIVCKKTV 550
Query: 582 PAVINEIAASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHDFSISGAVKRITDRN 641
A + + GP+ A + Q + + NGFS+G+ D A ++
Sbjct: 551 GAAAGGLVHVSWMEHGPEAAKALLNGCQTIVNYWLLHNGFSIGIGDTIADDATMAQINKI 610
Query: 642 IGKVSPLLYQ-----------------LRFIYNELVAQQLEKHMQDIELPAIKFASKSSR 684
I + Q LR + V + L + + A K S+
Sbjct: 611 IASARDTVKQTIHTAQRGQLKAMTGMTLRETFEAQVNRALNEAVNKAGSAAAKSFKVSNN 670
Query: 685 LGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSA 744
+ M+ S SK + ++Q +GQQ V G+ G HF D Y
Sbjct: 671 VKQMVVSGSKGSNINISQMSACVGQQ-NVEGKRIPFGFQYRSLPHFV------KDDYSPE 723
Query: 745 EYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGT 804
G ++ + GL P E H++ RE ++ ++ +E G + + L+ L D++V YDGT
Sbjct: 724 SRGFVENSYLRGLSPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKALEDIMVKYDGT 783
Query: 805 VRNVCSNSIIQFEYG 819
VRN IIQF YG
Sbjct: 784 VRN-AQGHIIQFAYG 797
>G8B659_CANPC (tr|G8B659) DNA-directed RNA polymerase OS=Candida parapsilosis
(strain CDC 317 / ATCC MYA-4646) GN=CPAR2_110260 PE=3
SV=1
Length = 1446
Score = 176 bits (446), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 212/881 (24%), Positives = 347/881 (39%), Gaps = 130/881 (14%)
Query: 48 LGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKM--- 104
+G+ C +C + A C GHFG+I L +P++H + + +L VC NC +
Sbjct: 59 MGISSNSSECATCHGNLAS-CNGHFGHIRLALPVFHVGYFKAVISVLQCVCKNCGAILLD 117
Query: 105 --KKTKFPSS----------SSGLAQRLLSPC-----CQEPNAAQVSIREVKTGDGACYL 147
K +F S + +R+ C C + N +++ +G G L
Sbjct: 118 PQAKRQFLSELRRPNIDNLKRMKILKRINDQCKKQRRCLKCNHVNGVVKKAASGAGPASL 177
Query: 148 VLKV-------SKSKMQDGFWRF-----------LDKYGYRYEVDHTRALLPCEVMEMIK 189
+ K + W L+K+ R + D P + + + K
Sbjct: 178 KIVHDTFRWIGKKDTPEKTLWDEDLDLVFQRNPDLEKFAKRIQEDFN----PLKTLNLFK 233
Query: 190 RFPLETKKKL---AGKGYFPQDGYVIKYLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKL 246
+ E + L + KG P+ Y+ +YLP PP C+ L ++
Sbjct: 234 QIIPEDCELLGMDSSKGGRPET-YIWRYLPAPPVCIRPSVMMDAQSNEDDLTVK--LTEI 290
Query: 247 LRKVEVIRSSRSGEPNFESHQVEANDLQSVVDQYLQIRGCAKPARDIETHFGVNKELSDA 306
+ +I++ + + + + + LQ V Y+ A PA G A
Sbjct: 291 VWTSSMIKAGITKGISINNLMEQWDYLQLSVAMYIN-SDAANPALMSGGGGGGGSGSKSA 349
Query: 307 SN-KAWLDKMKS---LFISKGSG----FSSRSVITGDGYKRINEVGIPHEIAQRITFEER 358
+ + ++K F SG FS R+VI+ D +I+EV +P +A+ +T+ E+
Sbjct: 350 KPIRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEK 409
Query: 359 VNSHNMCYLQKLV--------DENLCLAYKEGVSTYSLREGS--KGHTYLKPGQIVHRRI 408
+N LQ L+ N + E +LR G K L+ G +V R I
Sbjct: 410 CTRYNKKKLQGLIINGPDVHPGANYVMKQNEA-GKRNLRFGDRIKLAKSLQVGDVVERHI 468
Query: 409 MDGDIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLA 468
DGD+V NR P+ H+ S+ A + T ++N +C P ADFDGD ++L PQ+
Sbjct: 469 EDGDVVLFNRQPSLHRLSILAHYAKVRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEE 528
Query: 469 AKAEVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKK-GFMDRAAANQMAMFLS-- 525
A+AE + L V+ LL+ K F DRA+ Q+ +S
Sbjct: 529 ARAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFFDRASLVQLLSMMSDA 588
Query: 526 ---LPLPQPALLKAGSGDCYWTSTQILQC--------------------------ALPLS 556
+P P ++K WT Q+ LP
Sbjct: 589 DIQFDIPPPTIVKP---IMLWTGKQVFSLLIKPNRHSKVVINLNAKNKTFHPPAKGLPSE 645
Query: 557 FDCTGGRYLIRESDILGFDLGRDVL-PAVINEIAASVFFGKGPQEALNFFDVLQPFLMEC 615
G +IR S IL + + L + + ++ GPQEA + +
Sbjct: 646 MSPNDGFVIIRGSQILSGLMDKSTLGDGKKHSVFYTILRDYGPQEAAAAMNRMAKLCARF 705
Query: 616 IFSNGFSVGLHDFSISGAVKRITDRNIGKVSPLLYQLRFIYN--ELVAQQLEKHMQDIEL 673
+ + GFS+G++D + + +K+ + + + QL +YN +L Q Q +E
Sbjct: 706 LGNRGFSIGINDVTPAHELKQKKELMVEQAYLKCDQLIDLYNRGKLETQPGCNEEQTLEA 765
Query: 674 PAIKFASK-SSRLGD--------------MIDSKSKSALDKVTQQIGFLGQQLFVRGRLY 718
SK +GD M SK + V+Q + +GQQ+ + G
Sbjct: 766 KIGGLLSKVREEVGDVCIRELDSLNAPLIMATCGSKGSTLNVSQMVAVVGQQI-ISGHRV 824
Query: 719 SKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSR 778
G + HF P ++ G ++ FF GL P E L H+IS RE +V ++
Sbjct: 825 PDGFQDRSLPHFT-----KNSKTPQSK-GFVRNSFFSGLSPPEFLFHAISGREGLVDTAV 878
Query: 779 GLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 819
+E G + + LM L D+ YD TVRN SN I+QF YG
Sbjct: 879 KTAETGYMSRRLMKSLEDLSSQYDNTVRN-SSNGIVQFTYG 918
>M3J5V2_CANMA (tr|M3J5V2) DNA-directed RNA polymerase (Fragment) OS=Candida
maltosa Xu316 GN=G210_2216 PE=3 SV=1
Length = 1447
Score = 176 bits (446), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 211/882 (23%), Positives = 353/882 (40%), Gaps = 137/882 (15%)
Query: 48 LGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKM--- 104
+G+ C +C + A C GHFG+I L +P++H + + +L VC NC +
Sbjct: 58 MGISSNSQECSTCHGNLAS-CHGHFGHIRLALPVFHVGYFKNIISILQCVCKNCASILLD 116
Query: 105 --KKTKF------PSSSS----GLAQRLLSPC-----CQEPNAAQVSIREVKTGDGACYL 147
K +F P+ + + ++++ C C + N +++ +G G L
Sbjct: 117 EPSKRQFLNDLRRPNIDNLRRMKILKKIIEQCKKQRRCLKCNHINGVVKKAASGAGPAAL 176
Query: 148 VL----------KVSKSKMQ------DGFWRF--LDKYGYRYEVDHTRALLPCEVMEMIK 189
+ K + K Q F R L+K+ R + D L P + + + K
Sbjct: 177 KIVHDTFRWIGKKETPEKNQWDEDLDQVFNRNPELEKFAKRIQDD----LNPLKTLNLFK 232
Query: 190 RFPLETKKKLA---GKGYFPQDGYVIKYLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKL 246
+ E + KG P+ Y+ +YLP PP C+ L ++
Sbjct: 233 QITPEDCELFGLNPAKGGRPE-MYIWRYLPAPPVCIRPSVMMDAQSNEDDLTVK--LTEI 289
Query: 247 LRKVEVIRSSRSGEPNFESHQVEANDLQSVVDQYLQIRGCAKPARDIETHFGVNKELSDA 306
+ +I++ + + + + +Q V Y+ A PA G +
Sbjct: 290 VWTSSMIKAGILKGISINNLMEQWDYMQLSVAMYIN-SDSANPA----LSAGGGGAKASK 344
Query: 307 SNKAWLDKMKS---LFISKGSG----FSSRSVITGDGYKRINEVGIPHEIAQRITFEERV 359
+A+ ++K F SG FS R+VI+ D +I+EV +P +A+ +T+ E+
Sbjct: 345 PIRAFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLKIDEVAVPVLVAKVLTYPEKC 404
Query: 360 NSHNMCYLQKLVDENLCLAYKEGVSTYSLREGSKGH------------TYLKPGQIVHRR 407
+N LQ+L+ + G + Y +++G G YL+ G +V R
Sbjct: 405 TRYNRKKLQQLIVNGP--DFHPG-ANYVMKQGEAGKRNLRFGDRFKLAKYLQIGDVVERH 461
Query: 408 IMDGDIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSL 467
I DGD+V NR P+ H+ S+ + I T ++N +C P ADFDGD ++L PQ+
Sbjct: 462 IEDGDVVLFNRQPSLHRLSILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTE 521
Query: 468 AAKAEVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKK-GFMDRAAANQMAMFLS- 525
A+AE + L V+ LL+ K F DRA+ Q+ +S
Sbjct: 522 EARAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFFDRASLVQLLSMMSD 581
Query: 526 ----LPLPQPALLKAGSGDCYWTSTQILQC--------------------------ALPL 555
+P PA+ K WT Q+ LP
Sbjct: 582 ADIQFDIPPPAIFKPV---MLWTGKQVFSLLIKPNKKSNVVINLDAKNKTFHPPAKGLPS 638
Query: 556 SFDCTGGRYLIRESDILGFDLGRDVL-PAVINEIAASVFFGKGPQEALNFFDVLQPFLME 614
G +IR S IL + + L + + ++ GP EA + +
Sbjct: 639 EMSPNDGFVIIRGSQILSGLMDKSTLGDGKKHSVFYTILRDYGPHEAAAAMNRMAKLCAR 698
Query: 615 CIFSNGFSVGLHDFSISGAVKRITDRNIGKVSPLLYQLRFIYN--ELVAQQLEKHMQDIE 672
+ + GFS+G++D + + +K+ + + + QL +YN +L Q Q +E
Sbjct: 699 YLGNRGFSIGINDVTPADQLKQKKELMVEQAYLKCDQLIDLYNRGKLETQPGCNEEQTLE 758
Query: 673 LPAIKFASK-SSRLGD--------------MIDSKSKSALDKVTQQIGFLGQQLFVRGRL 717
SK G+ M SK + V+Q + +GQQ+ + G
Sbjct: 759 AKIGGLLSKVREEAGEVCIRELDSLNAPLIMATCGSKGSTLNVSQMVAVVGQQI-ISGHR 817
Query: 718 YSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSS 777
G + HF P ++ G ++ FF GL P E L H+IS RE +V ++
Sbjct: 818 VPDGFQDRSLPHFT-----KNSKTPQSK-GFVRNSFFSGLTPPEFLFHAISGREGLVDTA 871
Query: 778 RGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 819
+E G + + LM L D+ YD TVRN SN I+QF YG
Sbjct: 872 VKTAETGYMSRRLMKSLEDLSAQYDNTVRN-SSNGIVQFTYG 912
>A7J588_9LECA (tr|A7J588) DNA-directed RNA polymerase (Fragment) OS=Heterodermia
vulgaris GN=RPB1 PE=3 SV=1
Length = 996
Score = 176 bits (446), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 150/594 (25%), Positives = 259/594 (43%), Gaps = 53/594 (8%)
Query: 314 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLV-- 371
+++ + K FS+R+VITGD ++EVG+P IA+ +T+ E V +N+ L +LV
Sbjct: 252 RVRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKN 311
Query: 372 --DENLCLAY--KEGVSTYSLREGSK-GHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHS 426
+E+ Y ++ LR + G L+ G V R I+DGD + NR P HK S
Sbjct: 312 GPNEHPGARYVIRDTGERIDLRFHRRAGDLVLQYGWKVERHIVDGDXIIFNRQPYXHKES 371
Query: 427 LQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSS 486
+ V + T ++N + P ADFDGD ++L PQS +AEV +L V ++S
Sbjct: 372 MMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVNQLCMVPLNIVSP 431
Query: 487 HXXXXXXXXXXXXXXXXXXXVKKG-FMDRAAANQMAMFLSLP-----LPQPALLKAGSGD 540
++ F+++ M + L +P +PQPA+LK
Sbjct: 432 QRNSPLMGIVQDTLCGIYKICRRDVFLNQEQV--MNILLWVPEWDGIIPQPAVLKPTP-- 487
Query: 541 CYWTSTQILQCALPLSFDCTGGR---------YLIRESDILGFDLGRDVLPAVINEIAAS 591
WT QI+ +P + G + +++ L + V+ A + I
Sbjct: 488 -LWTGKQIVSLVIPAGLNLVKGSDYAPLKDDGIFVSSGELMFGLLNKKVVGAAMGGIIHI 546
Query: 592 VFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHDFSISGAVKRITD-------RNIGK 644
V+ KGP+ A+NFF+ Q + + NGFS+G+ D R+ + R + +
Sbjct: 547 VYNEKGPEAAMNFFNGAQAVVNYWLLHNGFSIGIGDTIPDRETIRLIEEAVNAQKREVAE 606
Query: 645 VSPLLYQLRF----------IYNELVAQQLEKHMQDIELPAIKFASKSSRLGDMIDSKSK 694
++ + + R + V++ L K D + M S SK
Sbjct: 607 ITQMATESRLDTLPGMNVRETFESRVSKALNKARDDAGTVTEDSLKDLNNATQMARSGSK 666
Query: 695 SALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGCFF 754
+ ++Q +GQQ V G+ G HF D Y G ++ +
Sbjct: 667 GSTINISQMTAVVGQQ-SVEGKRIPFGFKYRTLPHFT------KDDYSPESRGFVENSYL 719
Query: 755 HGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSII 814
GL P E H+++ RE + ++ +E G + + L+ L DV+ YDGT+RN + I+
Sbjct: 720 RGLTPTEFFFHAMAGREGPIDTAVKTAETGYIQRRLVKALEDVMAKYDGTIRNSLGD-IV 778
Query: 815 QFEYGLKAGDNASYLFPAGEHVGVLAATAMSNPAYKAVLDASPSSNCSWELMKE 868
QF YG + G + +++ P + V + ++D +P + S E +++
Sbjct: 779 QFVYG-EDGLDGAHIEPQRLDIIVCSDAKFEKDFRIDLMDDNPRTTVSAEFLEQ 831
>H0GNN4_9SACH (tr|H0GNN4) DNA-directed RNA polymerase OS=Saccharomyces cerevisiae
x Saccharomyces kudriavzevii VIN7 GN=VIN7_4542 PE=3 SV=1
Length = 1460
Score = 176 bits (445), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 210/887 (23%), Positives = 350/887 (39%), Gaps = 136/887 (15%)
Query: 45 NPFLGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCL-- 102
+P +G+ C +C + A C GHFG+++L +P++H + ++L +C NC
Sbjct: 55 DPKMGVSSSSLECATCHGNLAS-CHGHFGHLKLALPVFHIGYFKATIQILQGICKNCSAI 113
Query: 103 ---KMKKTKF------PSSSS----GLAQRLLSPC-----CQEPNAAQVSIREVKTGDGA 144
++ K +F P + G+ +++L C C A ++ K GA
Sbjct: 114 LLSEIDKRQFLHELRRPGVDNLRRMGILKKILDQCKKQRRCLHCGALNGVVK--KAAAGA 171
Query: 145 CYLVLKV---------SKSKMQDGFWRF-----------LDKYGYRYEVDHTRALLPCEV 184
LK+ KS + W L++Y R D L P +
Sbjct: 172 GSAALKIIHDTFRWVGKKSAPEKDIWVGEWKEVLAHNPELERYVKRCMDD----LNPLKT 227
Query: 185 MEMIKRFPLETKKKLAGKGYFPQ---DGYVIKYLPVPPNCLXXXXXXXXXXXXXXXXXXT 241
+ + K+ + L P + Y+ +YLP PP C+
Sbjct: 228 LNLFKQIKSADCELLGIDATVPSGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTV 287
Query: 242 FLRKLLRKVEVIRSSRSGEPNFESHQVEANDLQSVVDQYL--------QIRGCAKPARDI 293
L +++ +I++ + + + LQ V Y+ + G + +
Sbjct: 288 KLTEIVWTSSLIKAGLDKGISINNMMEHWDYLQLTVAMYINSDSVNPAMLPGSSNGGGKV 347
Query: 294 ETHFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRI 353
+ G + L K + + K FS R+VI+ D I+EV +P +A+ +
Sbjct: 348 KPIRGFCQRL-----KGKQGRFRGNLSGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVL 402
Query: 354 TFEERVNSHNMCYLQKLV--------DENLCLAYKEGVSTYSLREGS--KGHTYLKPGQI 403
T+ E+V +N LQ+L+ N L E + +LR G K L+ G +
Sbjct: 403 TYPEKVTRYNRHKLQELIVNGPNVHPGANYLLKRNED-ARRNLRYGDRMKLAKNLQIGDV 461
Query: 404 VHRRIMDGDIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFY 463
V R + DGD+V NR P+ H+ S+ + I T ++N +C P ADFDGD ++L
Sbjct: 462 VERHLEDGDVVLFNRQPSLHRLSILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHV 521
Query: 464 PQSLAAKAEVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKK-GFMDRAAANQMAM 522
PQ+ A+AE + L V+ LL+ K F DRA Q+
Sbjct: 522 PQTEEARAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFYDRATLTQLLS 581
Query: 523 FLS-----LPLPQPALLKAGSGDCYWTSTQILQC-------------------------- 551
+S +P PA++K WT Q+
Sbjct: 582 MMSDGIEHFDIPPPAIMKPYY---LWTGKQVFSLLIKPNHNSPVVINLDAKNKVFVPPKS 638
Query: 552 -ALPLSFDCTGGRYLIRESDILGFDLGRDVL-PAVINEIAASVFFGKGPQEALNFFDVLQ 609
+LP G +IR S IL + + VL + + ++ GPQEA N + +
Sbjct: 639 KSLPNEMSQNDGFVIIRGSQILSGVMDKSVLGDGKKHSVFYTILRDYGPQEAANAMNRMA 698
Query: 610 PFLMECIFSNGFSVGLHDFSISGAVKRITDRNIGKVSPLLYQLRFIYN--ELVAQQLEKH 667
+ + GFS+G++D + + +K+ + + +L ++N EL Q
Sbjct: 699 KLCARFLGNRGFSIGINDVTPADDLKQKKEELVEIAYRKCDELITLFNKGELETQPGCNE 758
Query: 668 MQDIELPAIKFASK-SSRLGD--------------MIDSKSKSALDKVTQQIGFLGQQLF 712
Q +E SK +GD M SK + V+Q + +GQQ+
Sbjct: 759 EQTLEAKIGGLLSKVREEVGDVCINELDNWNAPLIMATCGSKGSTLNVSQMVAVVGQQI- 817
Query: 713 VRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREI 772
+ G G + HF P ++ G ++ FF GL P E L H+IS RE
Sbjct: 818 ISGNRVPDGFQDRSLPHFP-----KNSKTPZSK-GFVRNSFFSGLSPPEFLFHAISGREG 871
Query: 773 MVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 819
+V ++ +E G + + LM L D+ YD TVR +N I+QF YG
Sbjct: 872 LVDTAVKTAETGYMSRRLMKSLEDLSCQYDNTVR-TSANGIVQFTYG 917
>M7NMZ7_9ASCO (tr|M7NMZ7) Uncharacterized protein OS=Pneumocystis murina B123
GN=PNEG_01810 PE=4 SV=1
Length = 1347
Score = 176 bits (445), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 214/877 (24%), Positives = 362/877 (41%), Gaps = 142/877 (16%)
Query: 57 CESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNC----LKMK------K 106
CE+CG + C GHFGY++L +P++H + + +L +C +C L++K K
Sbjct: 10 CETCG-EKMVTCVGHFGYVKLVLPVFHIGYFKTIITILQNICKDCSKILLELKDIHSFLK 68
Query: 107 TKFPSSSSGLAQRLLSPCCQEPNAAQVSIREVKTGDGACYLVLKVSKSKMQDGFWRFLDK 166
+ + L + S C+ N IR ++ KV K+ +++ +K
Sbjct: 69 ELRKAEADNLKK---SQICKRINDTCKKIRICPNCQSTQGVIKKVGALKIIHEKFKY-NK 124
Query: 167 YGYRYEVDHTRA---------------------LLPCEVMEMIKRFP-----LETKKKLA 200
+ E++ + L P +V+ + K+ P L L
Sbjct: 125 KNSQEEIEFRKTFETVLNSTPDMKTHLSKAHDDLNPLKVLNLFKQIPPMDCELLGINSLK 184
Query: 201 GKGYFPQDGYVIKYLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEVIRSS-RSG 259
G+ + ++ + +P PP C+ L +++ +I+S+ G
Sbjct: 185 GR----PEMFIWQCIPAPPVCVRPSISQDGASTEDDLTVK--LTEIIWTNSLIKSALEKG 238
Query: 260 EPNFESHQVEANDLQSVVDQYLQIRGCAKPARDIETHF-GVNKELSDASNKAWLDKMKS- 317
P +Q++++Q+ ++ C A I + G+ + + + + ++K
Sbjct: 239 TP-----------IQNLMEQWDYLQLCV--AMYINSELPGIYSQTNTKPMRGFCQRLKGK 285
Query: 318 --LFISKGSG----FSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLV 371
F SG FS+R+VI D I++V IP +IA+ +T+ ERV HN+ L+K +
Sbjct: 286 QGRFRGNLSGKRVDFSARTVIGPDPNLSIDQVAIPEQIAKILTYPERVTHHNIEQLKKAI 345
Query: 372 --------DENLCLAYKEGVSTYSLREGSKGHTYL--KPGQIVHRRIMDGDIVFINRPPT 421
N + + L+ G++ L K G IV R I D DIV NR P+
Sbjct: 346 INGPNIHPGANYIINQDNRFKKF-LKFGNRQKISLELKIGDIVERHIRDNDIVLFNRQPS 404
Query: 422 THKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEK 481
HK S+ V + T + N +C P ADFDGD ++L PQ+ A+AE +EL +V+
Sbjct: 405 LHKLSILCHRVKVRPWKTFRFNECVCNPYNADFDGDEMNLHVPQTEEARAEAIELMNVKN 464
Query: 482 QLLSSHXXXXXXXXXXXXXXXXXXXVKK-GFMDRAAANQMAMFL-----SLPLPQPALLK 535
L++ +K F DR M F+ ++ LP P ++K
Sbjct: 465 NLVTPRNGEPIIAAIQDFITASYLISQKDNFYDRKTFTHMCSFMVDACKNIDLPHPVIIK 524
Query: 536 AGSGDCYWTSTQILQCAL------PLSFD-----------------CTG-GRYLIRESDI 571
+ WT QI + P+ + C G LIR S+I
Sbjct: 525 PVT---LWTGKQIFNVLMRPNKSSPVMVNLDAKTRSFSSPKGVPDLCVNDGYLLIRSSEI 581
Query: 572 L-GFDLGRDVLPAVINEIAASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHDFSI 630
+ G V N I + GP EA + L + + GFS+G++D
Sbjct: 582 MCGVMDKSTVGDGKKNSIFYVILKNYGPDEAAEAMNRLSKLCSRWLGNQGFSIGINDVQ- 640
Query: 631 SGAVKRITDRNIGKVS-----PLLYQL-------------RFIYNELVAQQLEKHMQDIE 672
G + R ++ K + L++ L V+ L K +D+
Sbjct: 641 PGVLLREKKESLVKAAYQSCDDLIHALSSGKLENQPGCDAEQTLEAKVSGILSKVREDVG 700
Query: 673 LPAIKFASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKL 732
+ +K++ M SK + V+Q + +GQQ+ + G G + HF+
Sbjct: 701 QICMSELAKTNASLIMATCGSKGSKINVSQMVSCVGQQI-ISGSRVPNGFQDRSLPHFQ- 758
Query: 733 KCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMA 792
P A+ G +K F+ GL P E L H+IS RE +V ++ +E G + + LM
Sbjct: 759 ----KNAKQPPAK-GFVKNSFYSGLTPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMK 813
Query: 793 ILRDVVVCYDGTVRNVCSNSIIQFEYGLKAGDNASYL 829
L D+ + YDGTVRN S+ I+QF YG G + +YL
Sbjct: 814 SLEDLSLQYDGTVRN-SSSGIVQFIYG-DDGLDPTYL 848
>F7BLR6_XENTR (tr|F7BLR6) DNA-directed RNA polymerase (Fragment) OS=Xenopus
tropicalis GN=polr2a PE=3 SV=1
Length = 1946
Score = 175 bits (444), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 212/871 (24%), Positives = 343/871 (39%), Gaps = 133/871 (15%)
Query: 45 NPFLGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKM 104
+P G+ GRC++C +C GHFG+IEL P++H + + K+L VC C K+
Sbjct: 35 DPRQGVIERTGRCQTCA-GNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKL 93
Query: 105 KKTKFPSSSSGLAQRLLSPCCQEPNAAQVSIREVKTGDGAC---------YLVLK----- 150
+++ + +L +P + E+ G C + V +
Sbjct: 94 ----LVDANNPKIKDILIKSKGQPKKRLTHVYELCKGKNICEGGEEMDNKFGVEQTEGDE 149
Query: 151 -VSKSKMQDGFWRF--------LDKYGYRYEVDHTRA-----LLPCEVMEMIKRFPLETK 196
+ K K G R+ L+ Y V+ L P V E+ KR E
Sbjct: 150 DIQKEKGHGGCGRYQPRIRRTGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRITDEEC 209
Query: 197 KKLAGKGYFPQDGY-VIKYLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEVIRS 255
L F + + ++ LPVPP + KL V++
Sbjct: 210 FILGMDPRFARPEWLIVTVLPVPPLSVRPAVVMQGSARNQDD----LTHKLADIVKINNQ 265
Query: 256 SRSGEPNFESHQVEANDLQ-------SVVDQYLQ--IRGCAKPARDIETHFGVNKELSDA 306
R E N + V A D++ ++VD L R K R +++ + + L
Sbjct: 266 LRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKS---LKQRL--- 319
Query: 307 SNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCY 366
K +++ + K FS+R+VIT D I++VG+P IA +TF E V N+
Sbjct: 320 --KGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFPEIVTPFNIDR 377
Query: 367 LQKLVDENLCLAYKEGVSTYS--------------LREGSK-GHTYLKPGQIVHRRIMDG 411
LQ+LV + G S Y LR K +L+ G V R + DG
Sbjct: 378 LQELV--------RRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQIGYKVERHMCDG 429
Query: 412 DIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKA 471
DIV NR PT HK S+ V I T ++N + P ADFDGD ++L PQSL +A
Sbjct: 430 DIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRA 489
Query: 472 EVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKKG-FMDRAAANQMAMFLSL---P 527
E+ EL V + +++ K+ F++R + MFLS
Sbjct: 490 EIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGK 549
Query: 528 LPQPALLKAGSGDCYWTSTQILQCALPLSFDCT-----------GGRY----------LI 566
+PQPA+LK WT QI +P +C G Y ++
Sbjct: 550 VPQPAILKPRP---LWTGKQIFSLIVPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVIV 606
Query: 567 RESDILGFDLGRDVLPAVINEIAASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLH 626
+++ L + L + + G F+ +Q + + G ++G+
Sbjct: 607 ENGELIMGILCKKSLGTSAGSLVHISYLEMGHDTTRLFYSNIQTVINNWLLIEGHTIGIG 666
Query: 627 DFSISGA-----------------VKRITDRNIGKVSPLL-YQLRFIYNELVAQQLEKHM 668
D SI+ A ++ I + ++ P LR + V + L
Sbjct: 667 D-SIADAKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDAR 725
Query: 669 QDIELPAIKFASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVAS 728
A K S+ + M+ S +K + ++Q I +GQQ V G+ G
Sbjct: 726 DKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQ-NVEGKRIPFGFKHRTLP 784
Query: 729 HFKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFK 788
HF +K DY + G ++ + GL P E H++ RE ++ ++ +E G + +
Sbjct: 785 HF-IKDDYGPES-----RGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQR 838
Query: 789 NLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 819
L+ + V+V YD TVRN N ++Q YG
Sbjct: 839 RLIKSMESVMVKYDATVRNSI-NQVVQLRYG 868
>Q2PYR4_9FUNG (tr|Q2PYR4) DNA-directed RNA polymerase (Fragment) OS=Rhopalomyces
elegans GN=RPB1 PE=3 SV=1
Length = 792
Score = 175 bits (444), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 194/821 (23%), Positives = 333/821 (40%), Gaps = 117/821 (14%)
Query: 74 YIELPVPIYHPSHVSELKKMLSLVCLNCLKMKKTKFPSSSSGLAQRLLSPCCQEPNAAQV 133
++EL P+YH ++++KK+L VC C K+K + + GLA R+ +P A
Sbjct: 1 HVELAKPVYHVGFLTKVKKILECVCFYCSKLKVDE-SNPRFGLAMRI-----HDPKARLK 54
Query: 134 SIREVKTGDGAC------------------YLVLKVSKSKMQDGFWR---FLDKYGYRY- 171
++ E+ C +L K G R L K G +
Sbjct: 55 AVWELCKVKTMCDQDDEDADKRDDEDGEDEDTLLGKPKKHRHGGCGRRQPTLRKEGLKLY 114
Query: 172 -----------EVDHTRALLPCEVMEMIKRFPLETKKKLAGKGYFPQ-DGYVIKYLPVPP 219
++ + + P + ++++KR + + + F + + +I LPVPP
Sbjct: 115 ATQRSSSKEQNPLEGKQLVKPDQALQILKRISDDDLESMGLSVEFARPENLIIMVLPVPP 174
Query: 220 NCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEVIRSSRSGEPNFESHQVEANDLQSVVDQ 279
+ L V R R G P+ + + E LQ V
Sbjct: 175 PQVRPSIQMDGTSKGEDDLTHKLSDVLKANAXVARRERDGAPHHVTEEFETL-LQFHVAT 233
Query: 280 YL------QIRGCAKPARDIETHFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVIT 333
Y+ Q + K R +++ A K +++ + K FS+R+VIT
Sbjct: 234 YMDNDIAGQPQALQKSGRPLKS--------IRARLKGKEGRLRGNLMGKRVDFSARTVIT 285
Query: 334 GDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLV------DENLCLAYKEGVSTYS 387
GD I+EVG+P IA+ +TF E V +N+ LQ+LV Y++
Sbjct: 286 GDPNLSIDEVGVPLLIAKNLTFPEIVTPYNVGKLQELVANGPNAHPGARYVYRDNGERID 345
Query: 388 LREGSKGHTY-LKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLI 446
LR +G L+ G V R ++DGD+V NR P+ HK S+ V + HT ++N +
Sbjct: 346 LRFNRRGGDIPLQYGWRVERHLVDGDLVIFNRQPSLHKMSMMGHRVRVMPHHTFRLNLSV 405
Query: 447 CGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXX 506
P ADFDGD +++ PQSL +KAE+ E+ V +Q++S
Sbjct: 406 TTPYNADFDGDEMNMHVPQSLESKAEIQEICMVPRQIVSPQKNAPVMGIVQDTLCGVNIF 465
Query: 507 VKK-GFMDRAAANQMAMFLSLP-----LPQPALLKAGSGDCYWTSTQILQCALPLSFDCT 560
++ F+ R M + + +P +P PA+LK WT Q+L +P T
Sbjct: 466 TRRDTFLSRQQT--MNILMWVPNWDGRIPAPAILKPKP---LWTGKQMLTLIIPKGVSYT 520
Query: 561 GG-----------------RYLIRESDILGFDLGRDVLPAVINEIAASVFFGKGPQEALN 603
G + LI ++L + + + V + + + GP+
Sbjct: 521 GAHSGNPDGEHPHLTPNDTKVLIENGELLTGIVCKKTV-GVGSALIQVIMREHGPEVTKY 579
Query: 604 FFDVLQPFLMECIFSNGFSVGLHD-----FSISGAVKRITDRNIGKVSPLLYQ------- 651
FF+ +Q + +GFS+G+ D ++ IT+ V+ ++Y+
Sbjct: 580 FFNGIQHITNYWLLQHGFSIGIGDAVADRHTMETITNTITNAKTA-VNEVIYEAQQDRLD 638
Query: 652 ------LRFIYNELVAQQLEKHMQDIELPAIKFASKSSRLGDMIDSKSKSALDKVTQQIG 705
LR + V ++L + ++ A +++ + M+ + SK + Q
Sbjct: 639 CEPGMTLRETFEYKVNRELNRARENAGKSAQSSLRRNNNVKLMVTAGSKGNYLNICQMTA 698
Query: 706 FLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVH 765
+GQQ V G+ G HF D + A G + + GL P E H
Sbjct: 699 CVGQQ-NVEGKRIPFGFQYRTLPHFT------KDDHTPASRGFVDNSYLRGLTPTEFFFH 751
Query: 766 SISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVR 806
++S RE ++ ++ +E G + + L+ L DV+V YDGTVR
Sbjct: 752 AMSGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVR 792
>J4IAY2_FIBRA (tr|J4IAY2) DNA-directed RNA polymerase OS=Fibroporia radiculosa
(strain TFFH 294) GN=FIBRA_05852 PE=3 SV=1
Length = 1621
Score = 175 bits (444), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 156/569 (27%), Positives = 254/569 (44%), Gaps = 84/569 (14%)
Query: 314 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLVDE 373
+++ + K FS+R+VITGD ++EVG+P IA +TF ERV +N+ YLQ+LV
Sbjct: 199 RLRGNLMGKRVDFSARTVITGDPNLDLDEVGVPKSIAMNLTFPERVTPYNIAYLQELV-- 256
Query: 374 NLCLAYKEGVSTYS--------------LREGSKGHTYLKPGQIVHRRIMDGDIVFINRP 419
+ G +TY LR + +L+ G IV R + DGD V NR
Sbjct: 257 ------RNGPTTYPGARYVVRDTGERIDLRYNKRADAFLQYGWIVERHLRDGDFVLFNRQ 310
Query: 420 PTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSV 479
P+ HK S+ + V + T ++N + P ADFDGD +++ PQS +AE+ ++ V
Sbjct: 311 PSLHKMSMMSHRVKLMPYSTFRLNLSVTPPYNADFDGDEMNMHVPQSEETRAELSQIAWV 370
Query: 480 EKQLLSSHXXXXXXXXXXXXX-XXXXXXVKKGFMDRAAANQMAMFL-----SLPLPQPAL 533
+Q++S ++ F+D + +++ S+PL P +
Sbjct: 371 PRQIISPQANKPVMAIVQDTLCGIRKFTLRDTFLDWNQVQNILLWVPDWDGSVPL--PTV 428
Query: 534 LKAGSGDCYWTSTQILQCALPLSFDCTGGRYLIRESDILGFDLGRD---------VLPAV 584
+K WT QIL +P + + R D F+ D +L V
Sbjct: 429 IKP---KPLWTGKQILSMCIPRGIN------IYRSPDPKSFNPVFDDGMNIENGEILFGV 479
Query: 585 INE--IAAS-------VFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHD-FSISGAV 634
+ + + AS F KGP+ F LQ + +F NGFS+G+ D + G +
Sbjct: 480 VEKKTVGASQGGLIHITFREKGPEVTRALFSGLQQVVNYWLFHNGFSIGIGDTIADRGTM 539
Query: 635 KRITD------RNIG-----------KVSPLLYQLRFIYNELVAQQLEKHMQDIELPAIK 677
I + +N+ K +P + +R + V ++L A K
Sbjct: 540 AHIQEQIAIRKQNVTQAIDDATHDRLKAAPGM-TIRESFESRVERELNLARDQNGQYAQK 598
Query: 678 FASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYD 737
+ + + M+ + SK + ++Q +GQQ+ V GR G HF K D+
Sbjct: 599 NLKEDNNVKQMVVAGSKGSFINISQMSVCVGQQI-VEGRRIPYGFRHRTLPHFT-KDDFG 656
Query: 738 GDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDV 797
P A G ++ + GL P E H+++ RE ++ ++ +E G + + L+ L DV
Sbjct: 657 ----PEAR-GFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDV 711
Query: 798 VVCYDGTVRNVCSNSIIQFEYGLKAGDNA 826
+VCYDGTVRN + +IQF YG D A
Sbjct: 712 MVCYDGTVRNSLGD-LIQFVYGEDGMDGA 739
>G1TES0_RABIT (tr|G1TES0) DNA-directed RNA polymerase OS=Oryctolagus cuniculus
PE=3 SV=1
Length = 1739
Score = 175 bits (444), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 210/870 (24%), Positives = 344/870 (39%), Gaps = 131/870 (15%)
Query: 45 NPFLGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKM 104
+P G+ GRC++C +C GHFG+IEL P++H + + K+L VC C K+
Sbjct: 59 DPRQGVIERTGRCQTCA-GNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKL 117
Query: 105 KKTKFPSSSSGLAQRLLSPCCQEPNAAQVSIREVKTGDGAC---------YLVLK----- 150
S++ + +L+ +P + ++ G C + V +
Sbjct: 118 ----LVDSNNPKIKDILAKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDE 173
Query: 151 -VSKSKMQDGFWRF--------LDKYGYRYEVDHTRA-----LLPCEVMEMIKRFPLETK 196
++K K G R+ L+ Y V+ L P V E+ KR E
Sbjct: 174 DLTKEKGHGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEC 233
Query: 197 KKLAGKGYFPQDGY-VIKYLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEVIRS 255
L + + + + ++ LPVPP + KL V++
Sbjct: 234 FVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDD----LTHKLADIVKINNQ 289
Query: 256 SRSGEPNFESHQVEANDLQ-------SVVDQYLQ--IRGCAKPARDIETHFGVNKELSDA 306
R E N + V A D++ ++VD L R K R +++ + + L
Sbjct: 290 LRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKS---LKQRL--- 343
Query: 307 SNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCY 366
K +++ + K FS+R+VIT D I++VG+P IA +TF E V N+
Sbjct: 344 --KGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDR 401
Query: 367 LQKLVDENLCLAYKEGVSTYS--------------LREGSK-GHTYLKPGQIVHRRIMDG 411
LQ+LV + G S Y LR K +L+ G V R + DG
Sbjct: 402 LQELV--------RRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDG 453
Query: 412 DIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKA 471
DIV NR PT HK S+ V I T ++N + P ADFDGD ++L PQSL +A
Sbjct: 454 DIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRA 513
Query: 472 EVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKKG-FMDRAAANQMAMFLSL---P 527
E+ EL V + +++ K+ F++R + MFLS
Sbjct: 514 EIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGK 573
Query: 528 LPQPALLKAGSGDCYWTSTQILQCALPLSFDCT-----------GGRY----------LI 566
+PQPA+LK WT QI +P +C G Y ++
Sbjct: 574 VPQPAILKPRP---LWTGKQIFSLIIPGHINCVRTHSTHPDDEDSGPYKHISPGDTKVVV 630
Query: 567 RESDILGFDLGRDVLPAVINEIAASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLH 626
+++ L + L + + G F+ +Q + + G ++G+
Sbjct: 631 ENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIG 690
Query: 627 DF--------SISGAVKR--------ITDRNIGKVSPLL-YQLRFIYNELVAQQLEKHMQ 669
D I +K+ I + ++ P LR + V + L
Sbjct: 691 DSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARD 750
Query: 670 DIELPAIKFASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASH 729
A K S+ + M+ S +K + ++Q I +GQQ V G+ G H
Sbjct: 751 KTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQ-NVEGKRIPFGFKHRTLPH 809
Query: 730 FKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKN 789
F +K DY + G ++ + GL P E H++ RE ++ ++ +E G + +
Sbjct: 810 F-IKDDYGPES-----RGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRR 863
Query: 790 LMAILRDVVVCYDGTVRNVCSNSIIQFEYG 819
L+ + V+V YD TVRN N ++Q YG
Sbjct: 864 LIKSMESVMVKYDATVRNSI-NQVVQLRYG 892
>K5X834_PHACS (tr|K5X834) DNA-directed RNA polymerase OS=Phanerochaete carnosa
(strain HHB-10118-sp) GN=PHACADRAFT_169499 PE=3 SV=1
Length = 1403
Score = 175 bits (444), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 210/898 (23%), Positives = 346/898 (38%), Gaps = 177/898 (19%)
Query: 48 LGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLK---- 103
LG + CE+CG + C GH+ YI+L VP++H + +L +C +C +
Sbjct: 57 LGTTEKNAFCETCGLNSV-DCVGHYAYIKLAVPVFHIGYFKHCITILQCICKSCARVLLE 115
Query: 104 -------MKKTKFPS-----------SSSGLAQR-LLSPCCQEPNAAQVSIREVKTGDGA 144
+K+ + PS + + LA++ + P C N A VK
Sbjct: 116 EPDRRSYLKRFRRPSLENIQRQALIKAVNALARKTVYCPYCASTNGA------VKKASAL 169
Query: 145 CYLVLKVSKSKMQDGFWRFLDKYGYRYEVDHTRALL----------PCEVMEMIKRFPLE 194
+ K K D ++ + E A+ P +V+++ KR E
Sbjct: 170 KIIHDKFRAKKTVDEMEKWKKTFSSAIEAQKDLAMYVNRAVHEELNPLKVLDLFKRISDE 229
Query: 195 TKKKLAGKGYFPQ-DGYVIKYLPVPPNCLXXXXXXXXXX----XXXXXXXXTFLRKLLRK 249
+ L + F + + Y+ +Y+ VPP + F L+++
Sbjct: 230 DCELLGLRPEFARPEEYIWQYISVPPVAIRPSVAQDGASNEDDLTVKLTEIVFTNALIKQ 289
Query: 250 VEVIRSSRSGEPNFESHQVEANDLQSVVDQYLQIRGCAKPARDIETHFGVNKELSDASNK 309
G P + + + + LQ + Y+ GV ++ +
Sbjct: 290 -----GLAKGAPTAQFME-QWDFLQLSIAMYIN-----------SELPGVPSQMGQKPIR 332
Query: 310 AWLDKMKS---LFISKGSG----FSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSH 362
+ ++K F SG FS R+VI+ D RI+EV +P +A+ +T+ ERV H
Sbjct: 333 GFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPERVAKILTYPERVTQH 392
Query: 363 NMCYLQKLVDE--------NLCLAYKEGVSTYSLREGSKGHTY--LKPGQIVHRRIMDGD 412
N+ L+K + N A G + L+ G++ L+ G IV R I+DGD
Sbjct: 393 NLEILKKAIRNGCDVHPGANYVTAGSSGFKKF-LKFGNRNAIADGLRVGDIVERHIVDGD 451
Query: 413 IVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAE 472
IV NR P+ HK S+ V + + ++N +CGP ADFDGD ++L PQ+ A+ E
Sbjct: 452 IVLFNRQPSLHKLSIMCHRVKVRPWRSFRLNECVCGPYNADFDGDEMNLHVPQTEEARTE 511
Query: 473 VVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKKG-FMDRAAANQMAMFLS-----L 526
+EL SV+ L++ ++ F DR Q+ +L+ +
Sbjct: 512 ALELMSVKHNLVTPRNGEPVIAAIQDFITASFLLSRRDRFFDRCQFTQICSYLADADLQI 571
Query: 527 PLPQPALLKAGSGDCYWTSTQILQCAL-----------------------PLSF------ 557
+P P +LK WT QI + P ++
Sbjct: 572 DIPPPTILKPQR---LWTGKQIFNVLMRPNRHSRVRVNVESRCNKVEKPDPKAYPRMTPV 628
Query: 558 ---DCTGGRYLIRESDIL-GFDLGRDVLPAVINEIAASVFFGKGPQEALNFFDVLQPFLM 613
G +I S+I+ G V I + GP EA L
Sbjct: 629 DDMSPNDGWLVIVNSEIMCGVMDKATVGSGKKKSIFGVILRDYGPHEAATAMGRLAKLCA 688
Query: 614 ECIFSNGFSVGLHDFS-----------------------ISGAVKRITDRNIG------- 643
+ + GFS+G++D I+ A K + + G
Sbjct: 689 RYLANYGFSLGINDVIPGPILAAQKESMVQKAYAECDDLIARAKKGLLENKPGCDQEQTL 748
Query: 644 --KVSPLLYQLRFIYNELVAQQLEKHMQDIELPAIKFASKSSRLGDMIDSKSKSALDKVT 701
+S +L +R E+ ++L +H P I M S SK ++ V+
Sbjct: 749 EAMISSVLSNVREKVGEICMKELSRH----NAPLI-----------MATSGSKGSVINVS 793
Query: 702 QQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFE 761
Q + +GQQ+ + G G + HF K PS G ++ F+ GL P E
Sbjct: 794 QMVACVGQQI-IAGHRVPDGFQDRSLPHFPKKSREP----PSK--GFVRNSFYTGLTPTE 846
Query: 762 ELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 819
L H+IS RE +V ++ +E G + + LM L D+V YD +VRN ++QF YG
Sbjct: 847 FLFHAISGREGLVDTAVKTAETGYMQRRLMKALEDLVTHYDSSVRNAV-GGVVQFRYG 903
>E6ZML9_SPORE (tr|E6ZML9) DNA-directed RNA polymerase OS=Sporisorium reilianum
(strain SRZ2) GN=sr14765 PE=3 SV=1
Length = 1785
Score = 175 bits (444), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 144/554 (25%), Positives = 242/554 (43%), Gaps = 53/554 (9%)
Query: 314 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLVDE 373
+++ + K FS+R+VITGD ++EVG+P IA+ +T+ ERV +N +L +LV
Sbjct: 349 RLRGNLMGKRVNFSARTVITGDPLLELDEVGVPKSIARNLTYPERVTPYNRAWLSELVRN 408
Query: 374 N------LCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSL 427
++ L+ + L+PG IV R + DGD V NR P+ HK S+
Sbjct: 409 GPNDYPGAKYVIRDTGERIDLKYNRRSDMALQPGWIVERHLKDGDYVLFNRQPSLHKMSM 468
Query: 428 QALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSH 487
+ + + D T ++N + P ADFDGD ++L PQS +AE+ ++ V +Q++S
Sbjct: 469 MSHRIKLMDYSTFRLNLSVTPPYNADFDGDEMNLHVPQSEETRAELSQIAWVPRQIVSPQ 528
Query: 488 XXXXXXXXXXXXX-XXXXXXVKKGFMDRAAANQMAMFLS---LPLPQPALLKAGSGDCYW 543
++ +D Q+ ++++ +P P +LK YW
Sbjct: 529 ANKPVMGIVQDTLCGIRKFSLRDCLLDYHQVQQVLLWVADWDGVVPMPCILKPKP---YW 585
Query: 544 TSTQILQCALPLSFDC--------------TGGRYLIRESDILGFDLGRDVLPAVINEIA 589
+ QIL +P + G Y I +I+ + + V+ A +
Sbjct: 586 SGKQILSMCIPKGINVFLDKDKGLKNNFLKDDGVY-IENGEIMYGVINKKVVGASAGGLI 644
Query: 590 ASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHDFSISGAVKRITDRNI--GKVSP 647
+F KGP FF +Q + + NGFS+G+ D A ++ I K +
Sbjct: 645 HIIFREKGPVICKRFFSGVQRVVNFWLLHNGFSIGIGDTVADKATTDSINQTISAAKSAV 704
Query: 648 LLY---------------QLRFIYNELVAQQLEKHMQDIELPAIKFASKSSRLGDMIDSK 692
+ Y LR + V + L + D+ A + + M+ S
Sbjct: 705 MDYIKYARHDWLKVEAGMTLRESFEANVNRVLNQARDDVGNHAEGSLPDFNNVKQMVVSG 764
Query: 693 SKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGC 752
SK + ++Q +GQQ V G+ G HF D + G ++
Sbjct: 765 SKGSFINISQMSACVGQQ-SVEGKRIPFGFRHRSLPHFT------KDDFTPESRGFVENS 817
Query: 753 FFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNS 812
+ GL E H+++ RE ++ ++ +E G + + L+ L DV+VCYDGTVRN +N+
Sbjct: 818 YLRGLTAQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMVCYDGTVRN-STNN 876
Query: 813 IIQFEYGLKAGDNA 826
+IQF YG D A
Sbjct: 877 VIQFAYGEDGIDGA 890
>G3RFS4_GORGO (tr|G3RFS4) DNA-directed RNA polymerase OS=Gorilla gorilla gorilla
GN=POLR2A PE=3 SV=1
Length = 1914
Score = 175 bits (444), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 211/870 (24%), Positives = 346/870 (39%), Gaps = 131/870 (15%)
Query: 45 NPFLGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKM 104
+P G+ GRC++C +C GHFG+IEL P++H + + K+L VC C K+
Sbjct: 59 DPRQGVIERTGRCQTCA-GNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKL 117
Query: 105 KKTKFPSSSSGLAQRLLSPCCQEPNAAQVSIREVKTGDGAC---------YLVLK----- 150
S++ + +L+ +P + ++ G C + V +
Sbjct: 118 ----LVDSNNPKIKDILAKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDE 173
Query: 151 -VSKSKMQDGFWRF--------LDKYGYRYEVDH----TRALL-PCEVMEMIKRFPLETK 196
++K K G R+ L+ Y V+ + LL P V E+ KR E
Sbjct: 174 DLTKEKGHGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEC 233
Query: 197 KKLAGKGYFPQDGY-VIKYLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEVIRS 255
L + + + + ++ LPVPP + KL V++
Sbjct: 234 FVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDD----LTHKLADIVKINNQ 289
Query: 256 SRSGEPNFESHQVEANDLQ-------SVVDQYLQ--IRGCAKPARDIETHFGVNKELSDA 306
R E N + V A D++ ++VD L R K R +++ + + L
Sbjct: 290 LRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKS---LKQRL--- 343
Query: 307 SNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCY 366
K +++ + K FS+R+VIT D I++VG+P IA +TF E V N+
Sbjct: 344 --KGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDR 401
Query: 367 LQKLVDENLCLAYKEGVSTYS--------------LREGSK-GHTYLKPGQIVHRRIMDG 411
LQ+LV + G S Y LR K +L+ G V R + DG
Sbjct: 402 LQELV--------RRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDG 453
Query: 412 DIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKA 471
DIV NR PT HK S+ V I T ++N + P ADFDGD ++L PQSL +A
Sbjct: 454 DIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRA 513
Query: 472 EVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKKG-FMDRAAANQMAMFLSL---P 527
E+ EL V + +++ K+ F++R + MFLS
Sbjct: 514 EIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGK 573
Query: 528 LPQPALLKAGSGDCYWTSTQILQCALPLSFDCT-----------GGRY----------LI 566
+PQPA+LK WT QI +P +C G Y ++
Sbjct: 574 VPQPAILKPRP---LWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVV 630
Query: 567 RESDILGFDLGRDVLPAVINEIAASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLH 626
+++ L + L + + G F+ +Q + + G ++G+
Sbjct: 631 ENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIG 690
Query: 627 DF--------SISGAVKR--------ITDRNIGKVSPLL-YQLRFIYNELVAQQLEKHMQ 669
D I +K+ I + ++ P LR + V + L
Sbjct: 691 DSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARD 750
Query: 670 DIELPAIKFASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASH 729
A K S+ + M+ S +K + ++Q I +GQQ V G+ G H
Sbjct: 751 KTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQ-NVEGKRIPFGFKHRTLPH 809
Query: 730 FKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKN 789
F +K DY + G ++ + GL P E H++ RE ++ ++ +E G + +
Sbjct: 810 F-IKDDYGPES-----RGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRR 863
Query: 790 LMAILRDVVVCYDGTVRNVCSNSIIQFEYG 819
L+ + V+V YD TVRN N ++Q YG
Sbjct: 864 LIKSMESVMVKYDATVRNSI-NQVVQLRYG 892
>M7NS02_9ASCO (tr|M7NS02) Uncharacterized protein OS=Pneumocystis murina B123
GN=PNEG_01810 PE=4 SV=1
Length = 1403
Score = 175 bits (444), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 214/877 (24%), Positives = 362/877 (41%), Gaps = 142/877 (16%)
Query: 57 CESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNC----LKMK------K 106
CE+CG + C GHFGY++L +P++H + + +L +C +C L++K K
Sbjct: 66 CETCG-EKMVTCVGHFGYVKLVLPVFHIGYFKTIITILQNICKDCSKILLELKDIHSFLK 124
Query: 107 TKFPSSSSGLAQRLLSPCCQEPNAAQVSIREVKTGDGACYLVLKVSKSKMQDGFWRFLDK 166
+ + L + S C+ N IR ++ KV K+ +++ +K
Sbjct: 125 ELRKAEADNLKK---SQICKRINDTCKKIRICPNCQSTQGVIKKVGALKIIHEKFKY-NK 180
Query: 167 YGYRYEVDHTRA---------------------LLPCEVMEMIKRFP-----LETKKKLA 200
+ E++ + L P +V+ + K+ P L L
Sbjct: 181 KNSQEEIEFRKTFETVLNSTPDMKTHLSKAHDDLNPLKVLNLFKQIPPMDCELLGINSLK 240
Query: 201 GKGYFPQDGYVIKYLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEVIRSS-RSG 259
G+ + ++ + +P PP C+ L +++ +I+S+ G
Sbjct: 241 GR----PEMFIWQCIPAPPVCVRPSISQDGASTEDDLTVK--LTEIIWTNSLIKSALEKG 294
Query: 260 EPNFESHQVEANDLQSVVDQYLQIRGCAKPARDIETHF-GVNKELSDASNKAWLDKMKS- 317
P +Q++++Q+ ++ C A I + G+ + + + + ++K
Sbjct: 295 TP-----------IQNLMEQWDYLQLCV--AMYINSELPGIYSQTNTKPMRGFCQRLKGK 341
Query: 318 --LFISKGSG----FSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLV 371
F SG FS+R+VI D I++V IP +IA+ +T+ ERV HN+ L+K +
Sbjct: 342 QGRFRGNLSGKRVDFSARTVIGPDPNLSIDQVAIPEQIAKILTYPERVTHHNIEQLKKAI 401
Query: 372 --------DENLCLAYKEGVSTYSLREGSKGHTYL--KPGQIVHRRIMDGDIVFINRPPT 421
N + + L+ G++ L K G IV R I D DIV NR P+
Sbjct: 402 INGPNIHPGANYIINQDNRFKKF-LKFGNRQKISLELKIGDIVERHIRDNDIVLFNRQPS 460
Query: 422 THKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEK 481
HK S+ V + T + N +C P ADFDGD ++L PQ+ A+AE +EL +V+
Sbjct: 461 LHKLSILCHRVKVRPWKTFRFNECVCNPYNADFDGDEMNLHVPQTEEARAEAIELMNVKN 520
Query: 482 QLLSSHXXXXXXXXXXXXXXXXXXXVKK-GFMDRAAANQMAMFL-----SLPLPQPALLK 535
L++ +K F DR M F+ ++ LP P ++K
Sbjct: 521 NLVTPRNGEPIIAAIQDFITASYLISQKDNFYDRKTFTHMCSFMVDACKNIDLPHPVIIK 580
Query: 536 AGSGDCYWTSTQILQCAL------PLSFD-----------------CTG-GRYLIRESDI 571
+ WT QI + P+ + C G LIR S+I
Sbjct: 581 PVT---LWTGKQIFNVLMRPNKSSPVMVNLDAKTRSFSSPKGVPDLCVNDGYLLIRSSEI 637
Query: 572 L-GFDLGRDVLPAVINEIAASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHDFSI 630
+ G V N I + GP EA + L + + GFS+G++D
Sbjct: 638 MCGVMDKSTVGDGKKNSIFYVILKNYGPDEAAEAMNRLSKLCSRWLGNQGFSIGINDVQ- 696
Query: 631 SGAVKRITDRNIGKVS-----PLLYQL-------------RFIYNELVAQQLEKHMQDIE 672
G + R ++ K + L++ L V+ L K +D+
Sbjct: 697 PGVLLREKKESLVKAAYQSCDDLIHALSSGKLENQPGCDAEQTLEAKVSGILSKVREDVG 756
Query: 673 LPAIKFASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKL 732
+ +K++ M SK + V+Q + +GQQ+ + G G + HF+
Sbjct: 757 QICMSELAKTNASLIMATCGSKGSKINVSQMVSCVGQQI-ISGSRVPNGFQDRSLPHFQ- 814
Query: 733 KCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMA 792
P A+ G +K F+ GL P E L H+IS RE +V ++ +E G + + LM
Sbjct: 815 ----KNAKQPPAK-GFVKNSFYSGLTPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMK 869
Query: 793 ILRDVVVCYDGTVRNVCSNSIIQFEYGLKAGDNASYL 829
L D+ + YDGTVRN S+ I+QF YG G + +YL
Sbjct: 870 SLEDLSLQYDGTVRN-SSSGIVQFIYG-DDGLDPTYL 904
>E7QKQ6_YEASZ (tr|E7QKQ6) DNA-directed RNA polymerase OS=Saccharomyces cerevisiae
(strain Zymaflore VL3) GN=VL3_4483 PE=3 SV=1
Length = 1460
Score = 175 bits (444), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 208/887 (23%), Positives = 348/887 (39%), Gaps = 136/887 (15%)
Query: 45 NPFLGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLK- 103
+P +G+ C +C + A C GHFG+++L +P++H + ++L +C NC
Sbjct: 55 DPKMGVSSSSLECATCHGNLAS-CHGHFGHLKLALPVFHIGYFKATIQILQGICKNCSAI 113
Query: 104 ----------MKKTKFPSSSS----GLAQRLLSPC-----CQEPNAAQVSIREVKTGDGA 144
+ + + P + G+ +++L C C A ++ K GA
Sbjct: 114 LLSETDKRQFLHELRRPGVDNLRRMGILKKILDQCKKQRRCLHCGALNGVVK--KAAAGA 171
Query: 145 CYLVLKV---------SKSKMQDGFWRF-----------LDKYGYRYEVDHTRALLPCEV 184
LK+ KS + W L++Y R D L P +
Sbjct: 172 GSAALKIIHDTFRWVGKKSAPEKDIWVGEWKEVLAHNPELERYVKRCMDD----LNPLKT 227
Query: 185 MEMIKRFPLETKKKLAGKGYFPQ---DGYVIKYLPVPPNCLXXXXXXXXXXXXXXXXXXT 241
+ + K+ + L P + Y+ +YLP PP C+
Sbjct: 228 LNLFKQIKSADCELLGIDATVPSGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTV 287
Query: 242 FLRKLLRKVEVIRSSRSGEPNFESHQVEANDLQSVVDQYLQ--------IRGCAKPARDI 293
L +++ +I++ + + + LQ V Y+ + G + +
Sbjct: 288 KLTEIVWTSSLIKAGLDKGISINNMMEHWDYLQLTVAMYINSDSVNPAMLPGSSNGGGKV 347
Query: 294 ETHFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRI 353
+ G + L K + + K FS R+VI+ D I+EV +P +A+ +
Sbjct: 348 KPIRGFCQRL-----KGKQGRFRGNLSGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVL 402
Query: 354 TFEERVNSHNMCYLQKLV--------DENLCLAYKEGVSTYSLREGS--KGHTYLKPGQI 403
T+ E+V +N LQ+L+ N L E + +LR G K L+ G +
Sbjct: 403 TYPEKVTRYNRHKLQELIVNGPNVHPGANYLLKRNED-ARRNLRYGDRMKLAKNLQIGDV 461
Query: 404 VHRRIMDGDIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFY 463
V R + DGD+V NR P+ H+ S+ + I T ++N +C P ADFDGD ++L
Sbjct: 462 VERHLEDGDVVLFNRQPSLHRLSILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHV 521
Query: 464 PQSLAAKAEVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKK-GFMDRAAANQMAM 522
PQ+ A+AE + L V+ LL+ K F DRA Q+
Sbjct: 522 PQTEEARAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFYDRATLTQLLS 581
Query: 523 FLS-----LPLPQPALLKAGSGDCYWTSTQILQC-------------------------- 551
+S +P PA++K WT Q+
Sbjct: 582 MMSDGIEHFDIPPPAIMKPYY---LWTGKQVFSLLIKPNHNSPVVINLDAKNKVFVPPKS 638
Query: 552 -ALPLSFDCTGGRYLIRESDILGFDLGRDVL-PAVINEIAASVFFGKGPQEALNFFDVLQ 609
+LP G +IR S IL + + VL + + ++ GPQEA N + +
Sbjct: 639 KSLPNEMSQNDGFVIIRGSQILSGVMDKSVLGDGKKHSVFYTILRDYGPQEAANAMNRMA 698
Query: 610 PFLMECIFSNGFSVGLHDFSISGAVKRITDRNIGKVSPLLYQLRFIYN--ELVAQQLEKH 667
+ + GFS+G++D + + +K+ + + +L ++N EL Q
Sbjct: 699 KLCARFLGNRGFSIGINDVTPADDLKQKKEELVEIAYRKCDELITLFNKGELETQPGCNE 758
Query: 668 MQDIELPAIKFASK-SSRLGD--------------MIDSKSKSALDKVTQQIGFLGQQLF 712
Q +E SK +GD M SK + V+Q + +GQQ+
Sbjct: 759 EQTLEAKIGGLLSKVREEVGDVCINELDNWNAPLIMATCGSKGSTLNVSQMVAVVGQQI- 817
Query: 713 VRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREI 772
+ G G + HF P ++ G ++ FF GL P E L H+IS RE
Sbjct: 818 ISGNRVPDGFQDRSLPHFP-----KNSKTPQSK-GFVRNSFFSGLSPPEFLFHAISGREG 871
Query: 773 MVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 819
+V ++ +E G + + LM L D+ YD TVR +N I+QF YG
Sbjct: 872 LVDTAVKTAETGYMSRRLMKSLEDLSCQYDNTVR-TSANGIVQFTYG 917
>E7KII6_YEASA (tr|E7KII6) DNA-directed RNA polymerase OS=Saccharomyces cerevisiae
(strain AWRI796) GN=AWRI796_4511 PE=3 SV=1
Length = 1460
Score = 175 bits (444), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 208/887 (23%), Positives = 348/887 (39%), Gaps = 136/887 (15%)
Query: 45 NPFLGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLK- 103
+P +G+ C +C + A C GHFG+++L +P++H + ++L +C NC
Sbjct: 55 DPKMGVSSSSLECATCHGNLAS-CHGHFGHLKLALPVFHIGYFKATIQILQGICKNCSAI 113
Query: 104 ----------MKKTKFPSSSS----GLAQRLLSPC-----CQEPNAAQVSIREVKTGDGA 144
+ + + P + G+ +++L C C A ++ K GA
Sbjct: 114 LLSETDKRQFLHELRRPGVDNLRRMGILKKILDQCKKQRRCLHCGALNGVVK--KAAAGA 171
Query: 145 CYLVLKV---------SKSKMQDGFWRF-----------LDKYGYRYEVDHTRALLPCEV 184
LK+ KS + W L++Y R D L P +
Sbjct: 172 GSAALKIIHDTFRWVGKKSAPEKDIWVGEWKEVLAHNPELERYVKRCMDD----LNPLKT 227
Query: 185 MEMIKRFPLETKKKLAGKGYFPQ---DGYVIKYLPVPPNCLXXXXXXXXXXXXXXXXXXT 241
+ + K+ + L P + Y+ +YLP PP C+
Sbjct: 228 LNLFKQIKSADCELLGIDATVPSGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTV 287
Query: 242 FLRKLLRKVEVIRSSRSGEPNFESHQVEANDLQSVVDQYLQ--------IRGCAKPARDI 293
L +++ +I++ + + + LQ V Y+ + G + +
Sbjct: 288 KLTEIVWTSSLIKAGLDKGISINNMMEHWDYLQLTVAMYINSDSVNPAMLPGSSNGGGKV 347
Query: 294 ETHFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRI 353
+ G + L K + + K FS R+VI+ D I+EV +P +A+ +
Sbjct: 348 KPIRGFCQRL-----KGKQGRFRGNLSGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVL 402
Query: 354 TFEERVNSHNMCYLQKLV--------DENLCLAYKEGVSTYSLREGS--KGHTYLKPGQI 403
T+ E+V +N LQ+L+ N L E + +LR G K L+ G +
Sbjct: 403 TYPEKVTRYNRHKLQELIVNGPNVHPGANYLLKRNED-ARRNLRYGDRMKLAKNLQIGDV 461
Query: 404 VHRRIMDGDIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFY 463
V R + DGD+V NR P+ H+ S+ + I T ++N +C P ADFDGD ++L
Sbjct: 462 VERHLEDGDVVLFNRQPSLHRLSILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHV 521
Query: 464 PQSLAAKAEVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKK-GFMDRAAANQMAM 522
PQ+ A+AE + L V+ LL+ K F DRA Q+
Sbjct: 522 PQTEEARAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFYDRATLTQLLS 581
Query: 523 FLS-----LPLPQPALLKAGSGDCYWTSTQILQC-------------------------- 551
+S +P PA++K WT Q+
Sbjct: 582 MMSDGIEHFDIPPPAIMKPYY---LWTGKQVFSLLIKPNHNSPVVINLDAKNKVFVPPKS 638
Query: 552 -ALPLSFDCTGGRYLIRESDILGFDLGRDVL-PAVINEIAASVFFGKGPQEALNFFDVLQ 609
+LP G +IR S IL + + VL + + ++ GPQEA N + +
Sbjct: 639 KSLPNEMSQNDGFVIIRGSQILSGVMDKSVLGDGKKHSVFYTILRDYGPQEAANAMNRMA 698
Query: 610 PFLMECIFSNGFSVGLHDFSISGAVKRITDRNIGKVSPLLYQLRFIYN--ELVAQQLEKH 667
+ + GFS+G++D + + +K+ + + +L ++N EL Q
Sbjct: 699 KLCARFLGNRGFSIGINDVTPADDLKQKKEELVEIAYRKCDELITLFNKGELETQPGCNE 758
Query: 668 MQDIELPAIKFASK-SSRLGD--------------MIDSKSKSALDKVTQQIGFLGQQLF 712
Q +E SK +GD M SK + V+Q + +GQQ+
Sbjct: 759 EQTLEAKIGGLLSKVREEVGDVCINELDNWNAPLIMATCGSKGSTLNVSQMVAVVGQQI- 817
Query: 713 VRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREI 772
+ G G + HF P ++ G ++ FF GL P E L H+IS RE
Sbjct: 818 ISGNRVPDGFQDRSLPHFP-----KNSKTPQSK-GFVRNSFFSGLSPPEFLFHAISGREG 871
Query: 773 MVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 819
+V ++ +E G + + LM L D+ YD TVR +N I+QF YG
Sbjct: 872 LVDTAVKTAETGYMSRRLMKSLEDLSCQYDNTVR-TSANGIVQFTYG 917
>C8ZI78_YEAS8 (tr|C8ZI78) DNA-directed RNA polymerase OS=Saccharomyces cerevisiae
(strain Lalvin EC1118 / Prise de mousse)
GN=EC1118_1O4_3257g PE=3 SV=1
Length = 1460
Score = 175 bits (444), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 208/887 (23%), Positives = 348/887 (39%), Gaps = 136/887 (15%)
Query: 45 NPFLGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLK- 103
+P +G+ C +C + A C GHFG+++L +P++H + ++L +C NC
Sbjct: 55 DPKMGVSSSSLECATCHGNLAS-CHGHFGHLKLALPVFHIGYFKATIQILQGICKNCSAI 113
Query: 104 ----------MKKTKFPSSSS----GLAQRLLSPC-----CQEPNAAQVSIREVKTGDGA 144
+ + + P + G+ +++L C C A ++ K GA
Sbjct: 114 LLSETDKRQFLHELRRPGVDNLRRMGILKKILDQCKKQRRCLHCGALNGVVK--KAAAGA 171
Query: 145 CYLVLKV---------SKSKMQDGFWRF-----------LDKYGYRYEVDHTRALLPCEV 184
LK+ KS + W L++Y R D L P +
Sbjct: 172 GSAALKIIHDTFRWVGKKSAPEKDIWVGEWKEVLAHNPELERYVKRCMDD----LNPLKT 227
Query: 185 MEMIKRFPLETKKKLAGKGYFPQ---DGYVIKYLPVPPNCLXXXXXXXXXXXXXXXXXXT 241
+ + K+ + L P + Y+ +YLP PP C+
Sbjct: 228 LNLFKQIKSADCELLGIDATVPSGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTV 287
Query: 242 FLRKLLRKVEVIRSSRSGEPNFESHQVEANDLQSVVDQYLQ--------IRGCAKPARDI 293
L +++ +I++ + + + LQ V Y+ + G + +
Sbjct: 288 KLTEIVWTSSLIKAGLDKGISINNMMEHWDYLQLTVAMYINSDSVNPAMLPGSSNGGGKV 347
Query: 294 ETHFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRI 353
+ G + L K + + K FS R+VI+ D I+EV +P +A+ +
Sbjct: 348 KPIRGFCQRL-----KGKQGRFRGNLSGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVL 402
Query: 354 TFEERVNSHNMCYLQKLV--------DENLCLAYKEGVSTYSLREGS--KGHTYLKPGQI 403
T+ E+V +N LQ+L+ N L E + +LR G K L+ G +
Sbjct: 403 TYPEKVTRYNRHKLQELIVNGPNVHPGANYLLKRNED-ARRNLRYGDRMKLAKNLQIGDV 461
Query: 404 VHRRIMDGDIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFY 463
V R + DGD+V NR P+ H+ S+ + I T ++N +C P ADFDGD ++L
Sbjct: 462 VERHLEDGDVVLFNRQPSLHRLSILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHV 521
Query: 464 PQSLAAKAEVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKK-GFMDRAAANQMAM 522
PQ+ A+AE + L V+ LL+ K F DRA Q+
Sbjct: 522 PQTEEARAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFYDRATLTQLLS 581
Query: 523 FLS-----LPLPQPALLKAGSGDCYWTSTQILQC-------------------------- 551
+S +P PA++K WT Q+
Sbjct: 582 MMSDGIEHFDIPPPAIMKPYY---LWTGKQVFSLLIKPNHNSPVVINLDAKNKVFVPPKS 638
Query: 552 -ALPLSFDCTGGRYLIRESDILGFDLGRDVL-PAVINEIAASVFFGKGPQEALNFFDVLQ 609
+LP G +IR S IL + + VL + + ++ GPQEA N + +
Sbjct: 639 KSLPNEMSQNDGFVIIRGSQILSGVMDKSVLGDGKKHSVFYTILRDYGPQEAANAMNRMA 698
Query: 610 PFLMECIFSNGFSVGLHDFSISGAVKRITDRNIGKVSPLLYQLRFIYN--ELVAQQLEKH 667
+ + GFS+G++D + + +K+ + + +L ++N EL Q
Sbjct: 699 KLCARFLGNRGFSIGINDVTPADDLKQKKEELVEIAYRKCDELITLFNKGELETQPGCNE 758
Query: 668 MQDIELPAIKFASK-SSRLGD--------------MIDSKSKSALDKVTQQIGFLGQQLF 712
Q +E SK +GD M SK + V+Q + +GQQ+
Sbjct: 759 EQTLEAKIGGLLSKVREEVGDVCINELDNWNAPLIMATCGSKGSTLNVSQMVAVVGQQI- 817
Query: 713 VRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREI 772
+ G G + HF P ++ G ++ FF GL P E L H+IS RE
Sbjct: 818 ISGNRVPDGFQDRSLPHFP-----KNSKTPQSK-GFVRNSFFSGLSPPEFLFHAISGREG 871
Query: 773 MVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 819
+V ++ +E G + + LM L D+ YD TVR +N I+QF YG
Sbjct: 872 LVDTAVKTAETGYMSRRLMKSLEDLSCQYDNTVR-TSANGIVQFTYG 917
>B5VS07_YEAS6 (tr|B5VS07) DNA-directed RNA polymerase OS=Saccharomyces cerevisiae
(strain AWRI1631) GN=AWRI1631_152730 PE=3 SV=1
Length = 1460
Score = 175 bits (444), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 208/887 (23%), Positives = 348/887 (39%), Gaps = 136/887 (15%)
Query: 45 NPFLGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLK- 103
+P +G+ C +C + A C GHFG+++L +P++H + ++L +C NC
Sbjct: 55 DPKMGVSSSSLECATCHGNLAS-CHGHFGHLKLALPVFHIGYFKATIQILQGICKNCSAI 113
Query: 104 ----------MKKTKFPSSSS----GLAQRLLSPC-----CQEPNAAQVSIREVKTGDGA 144
+ + + P + G+ +++L C C A ++ K GA
Sbjct: 114 LLSETDKRQFLHELRRPGVDNLRRMGILKKILDQCKKQRRCLHCGALNGVVK--KAAAGA 171
Query: 145 CYLVLKV---------SKSKMQDGFWRF-----------LDKYGYRYEVDHTRALLPCEV 184
LK+ KS + W L++Y R D L P +
Sbjct: 172 GSAALKIIHDTFRWVGKKSAPEKDIWVGEWKEVLAHNPELERYVKRCMDD----LNPLKT 227
Query: 185 MEMIKRFPLETKKKLAGKGYFPQ---DGYVIKYLPVPPNCLXXXXXXXXXXXXXXXXXXT 241
+ + K+ + L P + Y+ +YLP PP C+
Sbjct: 228 LNLFKQIKSADCELLGIDATVPSGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTV 287
Query: 242 FLRKLLRKVEVIRSSRSGEPNFESHQVEANDLQSVVDQYLQ--------IRGCAKPARDI 293
L +++ +I++ + + + LQ V Y+ + G + +
Sbjct: 288 KLTEIVWTSSLIKAGLDKGISINNMMEHWDYLQLTVAMYINSDSVNPAMLPGSSNGGGKV 347
Query: 294 ETHFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRI 353
+ G + L K + + K FS R+VI+ D I+EV +P +A+ +
Sbjct: 348 KPIRGFCQRL-----KGKQGRFRGNLSGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVL 402
Query: 354 TFEERVNSHNMCYLQKLV--------DENLCLAYKEGVSTYSLREGS--KGHTYLKPGQI 403
T+ E+V +N LQ+L+ N L E + +LR G K L+ G +
Sbjct: 403 TYPEKVTRYNRHKLQELIVNGPNVHPGANYLLKRNED-ARRNLRYGDRMKLAKNLQIGDV 461
Query: 404 VHRRIMDGDIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFY 463
V R + DGD+V NR P+ H+ S+ + I T ++N +C P ADFDGD ++L
Sbjct: 462 VERHLEDGDVVLFNRQPSLHRLSILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHV 521
Query: 464 PQSLAAKAEVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKK-GFMDRAAANQMAM 522
PQ+ A+AE + L V+ LL+ K F DRA Q+
Sbjct: 522 PQTEEARAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFYDRATLTQLLS 581
Query: 523 FLS-----LPLPQPALLKAGSGDCYWTSTQILQC-------------------------- 551
+S +P PA++K WT Q+
Sbjct: 582 MMSDGIEHFDIPPPAIMKPYY---LWTGKQVFSLLIKPNHNSPVVINLDAKNKVFVPPKS 638
Query: 552 -ALPLSFDCTGGRYLIRESDILGFDLGRDVL-PAVINEIAASVFFGKGPQEALNFFDVLQ 609
+LP G +IR S IL + + VL + + ++ GPQEA N + +
Sbjct: 639 KSLPNEMSQNDGFVIIRGSQILSGVMDKSVLGDGKKHSVFYTILRDYGPQEAANAMNRMA 698
Query: 610 PFLMECIFSNGFSVGLHDFSISGAVKRITDRNIGKVSPLLYQLRFIYN--ELVAQQLEKH 667
+ + GFS+G++D + + +K+ + + +L ++N EL Q
Sbjct: 699 KLCARFLGNRGFSIGINDVTPADDLKQKKEELVEIAYRKCDELITLFNKGELETQPGCNE 758
Query: 668 MQDIELPAIKFASK-SSRLGD--------------MIDSKSKSALDKVTQQIGFLGQQLF 712
Q +E SK +GD M SK + V+Q + +GQQ+
Sbjct: 759 EQTLEAKIGGLLSKVREEVGDVCINELDNWNAPLIMATCGSKGSTLNVSQMVAVVGQQI- 817
Query: 713 VRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREI 772
+ G G + HF P ++ G ++ FF GL P E L H+IS RE
Sbjct: 818 ISGNRVPDGFQDRSLPHFP-----KNSKTPQSK-GFVRNSFFSGLSPPEFLFHAISGREG 871
Query: 773 MVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 819
+V ++ +E G + + LM L D+ YD TVR +N I+QF YG
Sbjct: 872 LVDTAVKTAETGYMSRRLMKSLEDLSCQYDNTVR-TSANGIVQFTYG 917
>B3LJF9_YEAS1 (tr|B3LJF9) DNA-directed RNA polymerase OS=Saccharomyces cerevisiae
(strain RM11-1a) GN=SCRG_01512 PE=3 SV=1
Length = 1460
Score = 175 bits (444), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 208/887 (23%), Positives = 348/887 (39%), Gaps = 136/887 (15%)
Query: 45 NPFLGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLK- 103
+P +G+ C +C + A C GHFG+++L +P++H + ++L +C NC
Sbjct: 55 DPKMGVSSSSLECATCHGNLAS-CHGHFGHLKLALPVFHIGYFKATIQILQGICKNCSAI 113
Query: 104 ----------MKKTKFPSSSS----GLAQRLLSPC-----CQEPNAAQVSIREVKTGDGA 144
+ + + P + G+ +++L C C A ++ K GA
Sbjct: 114 LLSETDKRQFLHELRRPGVDNLRRMGILKKILDQCKKQRRCLHCGALNGVVK--KAAAGA 171
Query: 145 CYLVLKV---------SKSKMQDGFWRF-----------LDKYGYRYEVDHTRALLPCEV 184
LK+ KS + W L++Y R D L P +
Sbjct: 172 GSAALKIIHDTFRWVGKKSAPEKDIWVGEWKEVLAHNPELERYVKRCMDD----LNPLKT 227
Query: 185 MEMIKRFPLETKKKLAGKGYFPQ---DGYVIKYLPVPPNCLXXXXXXXXXXXXXXXXXXT 241
+ + K+ + L P + Y+ +YLP PP C+
Sbjct: 228 LNLFKQIKSADCELLGIDATVPSGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTV 287
Query: 242 FLRKLLRKVEVIRSSRSGEPNFESHQVEANDLQSVVDQYLQ--------IRGCAKPARDI 293
L +++ +I++ + + + LQ V Y+ + G + +
Sbjct: 288 KLTEIVWTSSLIKAGLDKGISINNMMEHWDYLQLTVAMYINSDSVNPAMLPGSSNGGGKV 347
Query: 294 ETHFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRI 353
+ G + L K + + K FS R+VI+ D I+EV +P +A+ +
Sbjct: 348 KPIRGFCQRL-----KGKQGRFRGNLSGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVL 402
Query: 354 TFEERVNSHNMCYLQKLV--------DENLCLAYKEGVSTYSLREGS--KGHTYLKPGQI 403
T+ E+V +N LQ+L+ N L E + +LR G K L+ G +
Sbjct: 403 TYPEKVTRYNRHKLQELIVNGPNVHPGANYLLKRNED-ARRNLRYGDRMKLAKNLQIGDV 461
Query: 404 VHRRIMDGDIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFY 463
V R + DGD+V NR P+ H+ S+ + I T ++N +C P ADFDGD ++L
Sbjct: 462 VERHLEDGDVVLFNRQPSLHRLSILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHV 521
Query: 464 PQSLAAKAEVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKK-GFMDRAAANQMAM 522
PQ+ A+AE + L V+ LL+ K F DRA Q+
Sbjct: 522 PQTEEARAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFYDRATLTQLLS 581
Query: 523 FLS-----LPLPQPALLKAGSGDCYWTSTQILQC-------------------------- 551
+S +P PA++K WT Q+
Sbjct: 582 MMSDGIEHFDIPPPAIMKPYY---LWTGKQVFSLLIKPNHNSPVVINLDAKNKVFVPPKS 638
Query: 552 -ALPLSFDCTGGRYLIRESDILGFDLGRDVL-PAVINEIAASVFFGKGPQEALNFFDVLQ 609
+LP G +IR S IL + + VL + + ++ GPQEA N + +
Sbjct: 639 KSLPNEMSQNDGFVIIRGSQILSGVMDKSVLGDGKKHSVFYTILRDYGPQEAANAMNRMA 698
Query: 610 PFLMECIFSNGFSVGLHDFSISGAVKRITDRNIGKVSPLLYQLRFIYN--ELVAQQLEKH 667
+ + GFS+G++D + + +K+ + + +L ++N EL Q
Sbjct: 699 KLCARFLGNRGFSIGINDVTPADDLKQKKEELVEIAYRKCDELITLFNKGELETQPGCNE 758
Query: 668 MQDIELPAIKFASK-SSRLGD--------------MIDSKSKSALDKVTQQIGFLGQQLF 712
Q +E SK +GD M SK + V+Q + +GQQ+
Sbjct: 759 EQTLEAKIGGLLSKVREEVGDVCINELDNWNAPLIMATCGSKGSTLNVSQMVAVVGQQI- 817
Query: 713 VRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREI 772
+ G G + HF P ++ G ++ FF GL P E L H+IS RE
Sbjct: 818 ISGNRVPDGFQDRSLPHFP-----KNSKTPQSK-GFVRNSFFSGLSPPEFLFHAISGREG 871
Query: 773 MVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 819
+V ++ +E G + + LM L D+ YD TVR +N I+QF YG
Sbjct: 872 LVDTAVKTAETGYMSRRLMKSLEDLSCQYDNTVR-TSANGIVQFTYG 917
>F6XTX6_MONDO (tr|F6XTX6) DNA-directed RNA polymerase OS=Monodelphis domestica
GN=POLR2A PE=3 SV=2
Length = 1970
Score = 175 bits (444), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 228/938 (24%), Positives = 368/938 (39%), Gaps = 148/938 (15%)
Query: 45 NPFLGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKM 104
+P G+ GRC++C +C GHFG+IEL P++H + + K+L VC C K+
Sbjct: 59 DPRQGVIERTGRCQTCA-GNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKL 117
Query: 105 KKTKFPSSSSGLAQRLLSPCCQEPNAAQVSIREVKTGDGAC---------YLVLK----- 150
S++ + +L +P + ++ G C + V +
Sbjct: 118 ----LVDSNNPKIKDILGKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDE 173
Query: 151 -VSKSKMQDGFWRF--------LDKYGYRYEVDHTRA-----LLPCEVMEMIKRFPLETK 196
++K K G R+ L+ Y V+ L P V E+ KR E
Sbjct: 174 DLTKEKGHGGCGRYQPRIRRTGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEC 233
Query: 197 KKLAGKGYFPQDGY-VIKYLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEVIRS 255
L + + + + ++ LPVPP + KL V++
Sbjct: 234 FVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDD----LTHKLADIVKINNQ 289
Query: 256 SRSGEPNFESHQVEANDLQ-------SVVDQYLQ--IRGCAKPARDIETHFGVNKELSDA 306
R E N + V A D++ ++VD L R K R +++ + + L
Sbjct: 290 LRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKS---LKQRL--- 343
Query: 307 SNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCY 366
K +++ + K FS+R+VIT D I++VG+P IA +TF E V N+
Sbjct: 344 --KGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDR 401
Query: 367 LQKLVDENLCLAYKEGVSTYS--------------LREGSK-GHTYLKPGQIVHRRIMDG 411
LQ+LV + G S Y LR K +L+ G V R + DG
Sbjct: 402 LQELV--------RRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDG 453
Query: 412 DIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKA 471
DIV NR PT HK S+ V I T ++N + P ADFDGD ++L PQSL +A
Sbjct: 454 DIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRA 513
Query: 472 EVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKKG-FMDRAAANQMAMFLSL---P 527
E+ EL V + +++ K+ F++R + MFLS
Sbjct: 514 EIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGK 573
Query: 528 LPQPALLKAGSGDCYWTSTQILQCALPLSFDCT-----------GGRY----------LI 566
+PQPA+LK WT QI +P +C G Y ++
Sbjct: 574 VPQPAILKPRP---LWTGKQIFSLIVPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVV 630
Query: 567 RESDILGFDLGRDVLPAVINEIAASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLH 626
+++ L + L + + G F+ +Q + + G ++G+
Sbjct: 631 ENGELIMGILCKKSLGTSAGSLVHISYLEMGHDTTRLFYSNIQTVINNWLLIEGHTIGIG 690
Query: 627 DFSISGA-----------------VKRITDRNIGKVSPLL-YQLRFIYNELVAQQLEKHM 668
D SI+ A ++ I + ++ P LR + V + L
Sbjct: 691 D-SIADAKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDAR 749
Query: 669 QDIELPAIKFASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVAS 728
A K S+ + M+ S +K + ++Q I +GQQ V G+ G
Sbjct: 750 DKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQ-NVEGKRIPFGFKHRTLP 808
Query: 729 HFKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFK 788
HF +K DY + G ++ + GL P E H++ RE ++ ++ +E G + +
Sbjct: 809 HF-IKDDYGPES-----RGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQR 862
Query: 789 NLMAILRDVVVCYDGTVRNVCSNSIIQFEYGLKAGDNASYLFPAGEHVGV--LAATAMSN 846
L+ + V+V YD TVRN N ++Q YG AGE V LA SN
Sbjct: 863 RLIKSMESVMVKYDATVRNSI-NQVVQLRYGEDGL--------AGESVEFQNLATLKPSN 913
Query: 847 PAY--KAVLDASPSSNCSWELMKEI---LLCKVHFRNE 879
A+ K D + L +E+ +L H +NE
Sbjct: 914 KAFEKKFRFDYTNERALRRTLQEELVKDVLSNAHIQNE 951
>G3RTC9_GORGO (tr|G3RTC9) DNA-directed RNA polymerase OS=Gorilla gorilla gorilla
GN=POLR2A PE=3 SV=1
Length = 1807
Score = 175 bits (444), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 211/870 (24%), Positives = 346/870 (39%), Gaps = 131/870 (15%)
Query: 45 NPFLGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKM 104
+P G+ GRC++C +C GHFG+IEL P++H + + K+L VC C K+
Sbjct: 59 DPRQGVIERTGRCQTCA-GNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKL 117
Query: 105 KKTKFPSSSSGLAQRLLSPCCQEPNAAQVSIREVKTGDGAC---------YLVLK----- 150
S++ + +L+ +P + ++ G C + V +
Sbjct: 118 ----LVDSNNPKIKDILAKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDE 173
Query: 151 -VSKSKMQDGFWRF--------LDKYGYRYEVDH----TRALL-PCEVMEMIKRFPLETK 196
++K K G R+ L+ Y V+ + LL P V E+ KR E
Sbjct: 174 DLTKEKGHGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEC 233
Query: 197 KKLAGKGYFPQDGY-VIKYLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEVIRS 255
L + + + + ++ LPVPP + KL V++
Sbjct: 234 FVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDD----LTHKLADIVKINNQ 289
Query: 256 SRSGEPNFESHQVEANDLQ-------SVVDQYLQ--IRGCAKPARDIETHFGVNKELSDA 306
R E N + V A D++ ++VD L R K R +++ + + L
Sbjct: 290 LRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKS---LKQRL--- 343
Query: 307 SNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCY 366
K +++ + K FS+R+VIT D I++VG+P IA +TF E V N+
Sbjct: 344 --KGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDR 401
Query: 367 LQKLVDENLCLAYKEGVSTYS--------------LREGSK-GHTYLKPGQIVHRRIMDG 411
LQ+LV + G S Y LR K +L+ G V R + DG
Sbjct: 402 LQELV--------RRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDG 453
Query: 412 DIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKA 471
DIV NR PT HK S+ V I T ++N + P ADFDGD ++L PQSL +A
Sbjct: 454 DIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRA 513
Query: 472 EVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKKG-FMDRAAANQMAMFLSL---P 527
E+ EL V + +++ K+ F++R + MFLS
Sbjct: 514 EIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGK 573
Query: 528 LPQPALLKAGSGDCYWTSTQILQCALPLSFDCT-----------GGRY----------LI 566
+PQPA+LK WT QI +P +C G Y ++
Sbjct: 574 VPQPAILKPRP---LWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVV 630
Query: 567 RESDILGFDLGRDVLPAVINEIAASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLH 626
+++ L + L + + G F+ +Q + + G ++G+
Sbjct: 631 ENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIG 690
Query: 627 DF--------SISGAVKR--------ITDRNIGKVSPLL-YQLRFIYNELVAQQLEKHMQ 669
D I +K+ I + ++ P LR + V + L
Sbjct: 691 DSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARD 750
Query: 670 DIELPAIKFASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASH 729
A K S+ + M+ S +K + ++Q I +GQQ V G+ G H
Sbjct: 751 KTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQ-NVEGKRIPFGFKHRTLPH 809
Query: 730 FKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKN 789
F +K DY + G ++ + GL P E H++ RE ++ ++ +E G + +
Sbjct: 810 F-IKDDYGPES-----RGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRR 863
Query: 790 LMAILRDVVVCYDGTVRNVCSNSIIQFEYG 819
L+ + V+V YD TVRN N ++Q YG
Sbjct: 864 LIKSMESVMVKYDATVRNSI-NQVVQLRYG 892
>M0XQ01_HORVD (tr|M0XQ01) Uncharacterized protein OS=Hordeum vulgare var.
distichum PE=4 SV=1
Length = 171
Score = 175 bits (444), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 88/176 (50%), Positives = 122/176 (69%), Gaps = 6/176 (3%)
Query: 697 LDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDG-YPSAEYGLLKGCFFH 755
+ K+ +QIGFLG QL GRLYS L+ED S KC +G +P +G ++ F++
Sbjct: 1 MTKIVEQIGFLGHQLQRNGRLYSSSLVEDCLSKSLSKCGSSTNGCHPLEAHGFVRNSFWN 60
Query: 756 GLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQ 815
GL+P+E+L+HSIS RE +R+S+GL EPG LFKN+MA+LRDVV CYDG++RN C NSII+
Sbjct: 61 GLNPYEDLLHSISAREKTIRASKGLVEPGDLFKNMMAMLRDVVACYDGSIRNSCGNSIIK 120
Query: 816 FEYGLKAGDNASYLFPAGEHVGVLAATAMSNPAYKAVLDASPSSNCSWELMKEILL 871
F+ N+S G+ VG+LAATA++N AYKAVLD + ++ SW+ MK L+
Sbjct: 121 FDL-----TNSSSSVTPGDPVGILAATAVTNAAYKAVLDPNQNNMTSWDSMKVRLI 171
>N1NYF1_YEASX (tr|N1NYF1) Rpo31p OS=Saccharomyces cerevisiae CEN.PK113-7D
GN=CENPK1137D_2134 PE=4 SV=1
Length = 1460
Score = 175 bits (444), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 210/887 (23%), Positives = 349/887 (39%), Gaps = 136/887 (15%)
Query: 45 NPFLGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKM 104
+P +G+ C +C + A C GHFG+++L +P++H + ++L +C NC +
Sbjct: 55 DPKMGVSSSSLECATCHGNLAS-CHGHFGHLKLALPVFHIGYFKATIQILQGICKNCSAI 113
Query: 105 -----KKTKF------PSSSS----GLAQRLLSPC-----CQEPNAAQVSIREVKTGDGA 144
K +F P + G+ +++L C C A ++ K GA
Sbjct: 114 LLSETDKRQFLHELRRPGVDNLRRMGILKKILDQCKKQRRCLHCGALNGVVK--KAAAGA 171
Query: 145 CYLVLKV---------SKSKMQDGFWRF-----------LDKYGYRYEVDHTRALLPCEV 184
LK+ KS + W L++Y R D L P +
Sbjct: 172 GSAALKIIHDTFRWVGKKSAPEKDIWVGEWKEVLAHNPELERYVKRCMDD----LNPLKT 227
Query: 185 MEMIKRFPLETKKKLAGKGYFPQ---DGYVIKYLPVPPNCLXXXXXXXXXXXXXXXXXXT 241
+ + K+ + L P + Y+ +YLP PP C+
Sbjct: 228 LNLFKQIKSADCELLGIDATVPSGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTV 287
Query: 242 FLRKLLRKVEVIRSSRSGEPNFESHQVEANDLQSVVDQYLQ--------IRGCAKPARDI 293
L +++ +I++ + + + LQ V Y+ + G + +
Sbjct: 288 KLTEIVWTSSLIKAGLDKGISINNMMEHWDYLQLTVAMYINSDSVNPAMLPGSSNGGGKV 347
Query: 294 ETHFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRI 353
+ G + L K + + K FS R+VI+ D I+EV +P +A+ +
Sbjct: 348 KPIRGFCQRL-----KGKQGRFRGNLSGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVL 402
Query: 354 TFEERVNSHNMCYLQKLV--------DENLCLAYKEGVSTYSLREGS--KGHTYLKPGQI 403
T+ E+V +N LQ+L+ N L E + +LR G K L+ G +
Sbjct: 403 TYPEKVTRYNRHKLQELIVNGPNVHPGANYLLKRNED-ARRNLRYGDRMKLAKNLQIGDV 461
Query: 404 VHRRIMDGDIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFY 463
V R + DGD+V NR P+ H+ S+ + I T ++N +C P ADFDGD ++L
Sbjct: 462 VERHLEDGDVVLFNRQPSLHRLSILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHV 521
Query: 464 PQSLAAKAEVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKK-GFMDRAAANQMAM 522
PQ+ A+AE + L V+ LL+ K F DRA Q+
Sbjct: 522 PQTEEARAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFYDRATLTQLLS 581
Query: 523 FLS-----LPLPQPALLKAGSGDCYWTSTQILQC-------------------------- 551
+S +P PA++K WT Q+
Sbjct: 582 MMSDGIEHFDIPPPAIMKPYY---LWTGKQVFSLLIKPNHNSPVVINLDAKNKVFVPPKS 638
Query: 552 -ALPLSFDCTGGRYLIRESDILGFDLGRDVL-PAVINEIAASVFFGKGPQEALNFFDVLQ 609
+LP G +IR S IL + + VL + + ++ GPQEA N + +
Sbjct: 639 KSLPNEMSQNDGFVIIRGSQILSGVMDKSVLGDGKKHSVFYTILRDYGPQEAANAMNRMA 698
Query: 610 PFLMECIFSNGFSVGLHDFSISGAVKRITDRNIGKVSPLLYQLRFIYN--ELVAQQLEKH 667
+ + GFS+G++D + + +K+ + + +L ++N EL Q
Sbjct: 699 KLCARFLGNRGFSIGINDVTPADDLKQKKEELVEIAYHKCDELITLFNKGELETQPGCNE 758
Query: 668 MQDIELPAIKFASK-SSRLGD--------------MIDSKSKSALDKVTQQIGFLGQQLF 712
Q +E SK +GD M SK + V+Q + +GQQ+
Sbjct: 759 EQTLEAKIGGLLSKVREEVGDVCINELDNWNAPLIMATCGSKGSTLNVSQMVAVVGQQI- 817
Query: 713 VRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREI 772
+ G G + HF P ++ G ++ FF GL P E L H+IS RE
Sbjct: 818 ISGNRVPDGFQDRSLPHFP-----KNSKTPQSK-GFVRNSFFSGLSPPEFLFHAISGREG 871
Query: 773 MVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 819
+V ++ +E G + + LM L D+ YD TVR +N I+QF YG
Sbjct: 872 LVDTAVKTAETGYMSRRLMKSLEDLSCQYDNTVR-TSANGIVQFTYG 917
>F9X8Y2_MYCGM (tr|F9X8Y2) DNA-directed RNA polymerase OS=Mycosphaerella
graminicola (strain CBS 115943 / IPO323)
GN=MYCGRDRAFT_99873 PE=3 SV=1
Length = 1773
Score = 175 bits (444), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 150/571 (26%), Positives = 257/571 (45%), Gaps = 57/571 (9%)
Query: 314 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLV-- 371
+++ + K FS+R+VITGD +++VG+P A+ +TF ERV +N+ +Q+LV
Sbjct: 348 RLRGNLMGKRVDFSARTVITGDPNLDLDQVGVPRSTARVLTFPERVTVYNIHKMQELVRN 407
Query: 372 --DENLCLAY--KEGVSTYSLREGSK-GHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHS 426
D++ + +E S LR + G L+ G IV R I+DGD + NR P+ HK S
Sbjct: 408 GPDQHPGAKHVIREDGSRIDLRYHKRAGEIQLQLGWIVERHIVDGDYIIFNRQPSLHKES 467
Query: 427 LQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSS 486
+ V + T ++N + P ADFDGD ++L PQ +AEV L +V ++S
Sbjct: 468 MMGHRVKVMPYSTFRMNLSVTSPYNADFDGDEMNLHVPQGHETRAEVANLCAVPHNIVSP 527
Query: 487 HXXXXXXXXXXXXXXXXXXXVKKGFMDRAAANQMAMFLSLP-----LPQPALLKAGSGDC 541
KK M M + L +P +P PA++K
Sbjct: 528 QKNGPLMGIVQDTMAGCWMMTKKDVM-IDYQELMNILLWVPSWDGVVPPPAIIKP---QP 583
Query: 542 YWTSTQILQCALP--LSFDCTGGR-----------YLIRESDILGFDLGRDVLPAVINEI 588
WT Q+ P L++ + L++ +I+ + + V+ A + +
Sbjct: 584 RWTGKQVASLFFPPGLNYFMPASKNDDNPHEEKKEILVQNGEIMWGRIWKQVVGASQSGV 643
Query: 589 AASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHDF--------SISGAV---KRI 637
+F +GP+ A+ FF Q + + +GFSVG+ D I GA+ K
Sbjct: 644 VHYIFNDRGPEAAVEFFSGCQRIVCHWMLHHGFSVGIGDTIPDDHMVGEIEGAIVEEKLQ 703
Query: 638 TDRNIGKVSPLLYQ------LRFIYNELVAQQLEKHMQDIELPAIKFASKSSRLGDMIDS 691
D+ + +V + +R + L+ A + +G M++S
Sbjct: 704 VDKYVEQVQSDAMETLPGMTIRETFESQTKAALDNARNKAGDAAFALMKSCNNVGVMVNS 763
Query: 692 KSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKG 751
SK + V+Q +GQQ + G+ G V HF D Y A G ++
Sbjct: 764 GSKGSSTNVSQMTAAVGQQ-SLEGKRLPFGFKYRVLPHFP------KDDYSPASRGFVEN 816
Query: 752 CFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSN 811
+ GL P E H++ RE ++ ++ +E G + + L+ L ++++ YDGTVRN +
Sbjct: 817 SYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEEIMIKYDGTVRNSLGD 876
Query: 812 SIIQFEYGLKAGDNASYLFPAGEHVGVLAAT 842
I+QF YG + G +A+Y+ +H+ +A++
Sbjct: 877 -ILQFTYG-EDGLDATYI--ESQHINTIASS 903
>A6ZNW4_YEAS7 (tr|A6ZNW4) DNA-directed RNA polymerase OS=Saccharomyces cerevisiae
(strain YJM789) GN=RPO31 PE=3 SV=1
Length = 1460
Score = 175 bits (444), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 210/887 (23%), Positives = 349/887 (39%), Gaps = 136/887 (15%)
Query: 45 NPFLGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKM 104
+P +G+ C +C + A C GHFG+++L +P++H + ++L +C NC +
Sbjct: 55 DPKMGVSSSSLECATCHGNLAS-CHGHFGHLKLALPVFHIGYFKATIQILQGICKNCSAI 113
Query: 105 -----KKTKF------PSSSS----GLAQRLLSPC-----CQEPNAAQVSIREVKTGDGA 144
K +F P + G+ +++L C C A ++ K GA
Sbjct: 114 LLSETDKRQFLHELRRPGVDNLRRMGILKKILDQCKKQRRCLHCGALNGVVK--KAAAGA 171
Query: 145 CYLVLKV---------SKSKMQDGFWRF-----------LDKYGYRYEVDHTRALLPCEV 184
LK+ KS + W L++Y R D L P +
Sbjct: 172 GSAALKIIHDTFRWVGKKSAPEKDIWVGEWKEVLAHNPELERYVKRCMDD----LNPLKT 227
Query: 185 MEMIKRFPLETKKKLAGKGYFPQ---DGYVIKYLPVPPNCLXXXXXXXXXXXXXXXXXXT 241
+ + K+ + L P + Y+ +YLP PP C+
Sbjct: 228 LNLFKQIKSADCELLGIDATVPSGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTV 287
Query: 242 FLRKLLRKVEVIRSSRSGEPNFESHQVEANDLQSVVDQYLQ--------IRGCAKPARDI 293
L +++ +I++ + + + LQ V Y+ + G + +
Sbjct: 288 KLTEIVWTSSLIKAGLDKGISINNMMEHWDYLQLTVAMYINSDSVNPAMLPGSSNGGGKV 347
Query: 294 ETHFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRI 353
+ G + L K + + K FS R+VI+ D I+EV +P +A+ +
Sbjct: 348 KPIRGFCQRL-----KGKQGRFRGNLSGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVL 402
Query: 354 TFEERVNSHNMCYLQKLV--------DENLCLAYKEGVSTYSLREGS--KGHTYLKPGQI 403
T+ E+V +N LQ+L+ N L E + +LR G K L+ G +
Sbjct: 403 TYPEKVTRYNRHKLQELIVNGPNVHPGANYLLKRNED-ARRNLRYGDRMKLAKNLQIGDV 461
Query: 404 VHRRIMDGDIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFY 463
V R + DGD+V NR P+ H+ S+ + I T ++N +C P ADFDGD ++L
Sbjct: 462 VERHLEDGDVVLFNRQPSLHRLSILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHV 521
Query: 464 PQSLAAKAEVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKK-GFMDRAAANQMAM 522
PQ+ A+AE + L V+ LL+ K F DRA Q+
Sbjct: 522 PQTEEARAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFYDRATLTQLLS 581
Query: 523 FLS-----LPLPQPALLKAGSGDCYWTSTQILQC-------------------------- 551
+S +P PA++K WT Q+
Sbjct: 582 MMSDGIEHFDIPPPAIMKPYY---LWTGKQVFSLLIKPNHNSPVVINLDAKNKVFVPPKS 638
Query: 552 -ALPLSFDCTGGRYLIRESDILGFDLGRDVL-PAVINEIAASVFFGKGPQEALNFFDVLQ 609
+LP G +IR S IL + + VL + + ++ GPQEA N + +
Sbjct: 639 KSLPNEMSQNDGFVIIRGSQILSGVMDKSVLGDGKKHSVFYTILRDYGPQEAANAMNRMA 698
Query: 610 PFLMECIFSNGFSVGLHDFSISGAVKRITDRNIGKVSPLLYQLRFIYN--ELVAQQLEKH 667
+ + GFS+G++D + + +K+ + + +L ++N EL Q
Sbjct: 699 KLCARFLGNRGFSIGINDVTPADDLKQKKEELVEIAYHKCDELITLFNKGELETQPGCNE 758
Query: 668 MQDIELPAIKFASK-SSRLGD--------------MIDSKSKSALDKVTQQIGFLGQQLF 712
Q +E SK +GD M SK + V+Q + +GQQ+
Sbjct: 759 EQTLEAKIGGLLSKVREEVGDVCINELDNWNAPLIMATCGSKGSTLNVSQMVAVVGQQI- 817
Query: 713 VRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREI 772
+ G G + HF P ++ G ++ FF GL P E L H+IS RE
Sbjct: 818 ISGNRVPDGFQDRSLPHFP-----KNSKTPQSK-GFVRNSFFSGLSPPEFLFHAISGREG 871
Query: 773 MVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 819
+V ++ +E G + + LM L D+ YD TVR +N I+QF YG
Sbjct: 872 LVDTAVKTAETGYMSRRLMKSLEDLSCQYDNTVR-TSANGIVQFTYG 917
>I2FUN2_USTH4 (tr|I2FUN2) DNA-directed RNA polymerase OS=Ustilago hordei (strain
Uh4875-4) GN=UHOR_05868 PE=3 SV=1
Length = 1784
Score = 175 bits (443), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 142/554 (25%), Positives = 242/554 (43%), Gaps = 53/554 (9%)
Query: 314 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLVDE 373
+++ + K FS+R+VITGD ++EVG+P IA+ +T+ ERV +N +L +LV
Sbjct: 350 RLRGNLMGKRVNFSARTVITGDPLLELDEVGVPKSIARNLTYPERVTPYNRAWLSELVRN 409
Query: 374 N------LCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSL 427
++ L+ + L+PG IV R + DGD + NR P+ HK S+
Sbjct: 410 GPNDYPGAKYVIRDTGERIDLKYNRRSDMALQPGWIVERHLKDGDYILFNRQPSLHKMSM 469
Query: 428 QALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSH 487
+ + + D T ++N + P ADFDGD ++L PQS +AE+ ++ V +Q++S
Sbjct: 470 MSHRIKLMDYSTFRLNLSVTPPYNADFDGDEMNLHVPQSEETRAELSQIAWVPRQIVSPQ 529
Query: 488 XXXXXXXXXXXXX-XXXXXXVKKGFMDRAAANQMAMFLS---LPLPQPALLKAGSGDCYW 543
++ +D Q+ ++++ +P P +LK YW
Sbjct: 530 ANKPVMGIVQDTLCGIRKFSLRDCLLDYQQVQQVLLWVADWDGVVPMPCILKPKP---YW 586
Query: 544 TSTQILQCALPLSFDC--------------TGGRYLIRESDILGFDLGRDVLPAVINEIA 589
+ QIL +P + G Y I +I+ + + V+ A +
Sbjct: 587 SGKQILSMCIPKGINVFLDKDKGLKNNFLKDDGVY-IENGEIMYGVINKKVVGASAGGLI 645
Query: 590 ASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHDFSISGAVKRITDRNI--GKVSP 647
+F KGP FF +Q + + NGFS+G+ D A ++ I K +
Sbjct: 646 HIIFREKGPVVCKRFFSGVQRVVNFWLLHNGFSIGIGDTVADKATTDSINQTITAAKAAV 705
Query: 648 LLY---------------QLRFIYNELVAQQLEKHMQDIELPAIKFASKSSRLGDMIDSK 692
+ Y LR + V + L + D+ A + + M+ +
Sbjct: 706 MDYIKYARHDWLKVEAGMTLRESFEANVNRVLNQARDDVGNHAEASLPDFNAVKQMVVAG 765
Query: 693 SKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGC 752
SK + ++Q +GQQ V G+ G HF D + G ++
Sbjct: 766 SKGSFINISQMSACVGQQ-SVEGKRIPFGFRHRSLPHFT------KDDFTPESRGFVENS 818
Query: 753 FFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNS 812
+ GL E H+++ RE ++ ++ +E G + + L+ L DV+VCYDGTVRN +N+
Sbjct: 819 YLRGLTAQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMVCYDGTVRN-STNN 877
Query: 813 IIQFEYGLKAGDNA 826
+IQF YG D A
Sbjct: 878 VIQFAYGEDGIDGA 891
>G3VJ85_SARHA (tr|G3VJ85) DNA-directed RNA polymerase OS=Sarcophilus harrisii
GN=POLR2A PE=3 SV=1
Length = 1921
Score = 175 bits (443), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 228/938 (24%), Positives = 368/938 (39%), Gaps = 148/938 (15%)
Query: 45 NPFLGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKM 104
+P G+ GRC++C +C GHFG+IEL P++H + + K+L VC C K+
Sbjct: 59 DPRQGVIERTGRCQTCA-GNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKL 117
Query: 105 KKTKFPSSSSGLAQRLLSPCCQEPNAAQVSIREVKTGDGAC---------YLVLK----- 150
S++ + +L +P + ++ G C + V +
Sbjct: 118 ----LVDSNNPKIKDILGKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDE 173
Query: 151 -VSKSKMQDGFWRF--------LDKYGYRYEVDHTRA-----LLPCEVMEMIKRFPLETK 196
++K K G R+ L+ Y V+ L P V E+ KR E
Sbjct: 174 DLTKEKGHGGCGRYQPRIRRTGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEC 233
Query: 197 KKLAGKGYFPQDGY-VIKYLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEVIRS 255
L + + + + ++ LPVPP + KL V++
Sbjct: 234 FVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDD----LTHKLADIVKINNQ 289
Query: 256 SRSGEPNFESHQVEANDLQ-------SVVDQYLQ--IRGCAKPARDIETHFGVNKELSDA 306
R E N + V A D++ ++VD L R K R +++ + + L
Sbjct: 290 LRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKS---LKQRL--- 343
Query: 307 SNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCY 366
K +++ + K FS+R+VIT D I++VG+P IA +TF E V N+
Sbjct: 344 --KGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDR 401
Query: 367 LQKLVDENLCLAYKEGVSTYS--------------LREGSK-GHTYLKPGQIVHRRIMDG 411
LQ+LV + G S Y LR K +L+ G V R + DG
Sbjct: 402 LQELV--------RRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDG 453
Query: 412 DIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKA 471
DIV NR PT HK S+ V I T ++N + P ADFDGD ++L PQSL +A
Sbjct: 454 DIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRA 513
Query: 472 EVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKKG-FMDRAAANQMAMFLSL---P 527
E+ EL V + +++ K+ F++R + MFLS
Sbjct: 514 EIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGK 573
Query: 528 LPQPALLKAGSGDCYWTSTQILQCALPLSFDCT-----------GGRY----------LI 566
+PQPA+LK WT QI +P +C G Y ++
Sbjct: 574 VPQPAILKPRP---LWTGKQIFSLIVPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVV 630
Query: 567 RESDILGFDLGRDVLPAVINEIAASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLH 626
+++ L + L + + G F+ +Q + + G ++G+
Sbjct: 631 ENGELIMGILCKKSLGTSAGSLVHISYLEMGHDTTRLFYSNIQTVINNWLLIEGHTIGIG 690
Query: 627 DFSISGA-----------------VKRITDRNIGKVSPLL-YQLRFIYNELVAQQLEKHM 668
D SI+ A ++ I + ++ P LR + V + L
Sbjct: 691 D-SIADAKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDAR 749
Query: 669 QDIELPAIKFASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVAS 728
A K S+ + M+ S +K + ++Q I +GQQ V G+ G
Sbjct: 750 DKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQ-NVEGKRIPFGFKHRTLP 808
Query: 729 HFKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFK 788
HF +K DY + G ++ + GL P E H++ RE ++ ++ +E G + +
Sbjct: 809 HF-IKDDYGPES-----RGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQR 862
Query: 789 NLMAILRDVVVCYDGTVRNVCSNSIIQFEYGLKAGDNASYLFPAGEHVGV--LAATAMSN 846
L+ + V+V YD TVRN N ++Q YG AGE V LA SN
Sbjct: 863 RLIKSMESVMVKYDATVRNSI-NQVVQLRYGEDGL--------AGESVEFQNLATLKPSN 913
Query: 847 PAY--KAVLDASPSSNCSWELMKEI---LLCKVHFRNE 879
A+ K D + L +E+ +L H +NE
Sbjct: 914 KAFEKKFRFDYTNERALRRTLQEELVKDVLSNAHIQNE 951
>G2WMZ2_YEASK (tr|G2WMZ2) DNA-directed RNA polymerase OS=Saccharomyces cerevisiae
(strain Kyokai no. 7 / NBRC 101557) GN=K7_RPO31 PE=3
SV=1
Length = 1460
Score = 175 bits (443), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 208/887 (23%), Positives = 348/887 (39%), Gaps = 136/887 (15%)
Query: 45 NPFLGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLK- 103
+P +G+ C +C + A C GHFG+++L +P++H + ++L +C NC
Sbjct: 55 DPKMGVSSSSLECATCHGNLAS-CHGHFGHLKLALPVFHIGYFKATIQILQGICKNCSAI 113
Query: 104 ----------MKKTKFPSSSS----GLAQRLLSPC-----CQEPNAAQVSIREVKTGDGA 144
+ + + P + G+ +++L C C A ++ K GA
Sbjct: 114 LLSETDKRQFLHELRRPGVDNLRRMGILKKILDQCKKQRRCLHCGALNGVVK--KAAAGA 171
Query: 145 CYLVLKV---------SKSKMQDGFWRF-----------LDKYGYRYEVDHTRALLPCEV 184
LK+ KS + W L++Y R D L P +
Sbjct: 172 GSAALKIIHDTFRWVGKKSAPEKDIWVGEWKEVLAHNPELERYVKRCMDD----LNPLKT 227
Query: 185 MEMIKRFPLETKKKLAGKGYFPQ---DGYVIKYLPVPPNCLXXXXXXXXXXXXXXXXXXT 241
+ + K+ + L P + Y+ +YLP PP C+
Sbjct: 228 LNLFKQIKSADCELLGIDATVPSGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTV 287
Query: 242 FLRKLLRKVEVIRSSRSGEPNFESHQVEANDLQSVVDQYL--------QIRGCAKPARDI 293
L +++ +I++ + + + LQ V Y+ + G + +
Sbjct: 288 KLTEIVWTSSLIKAGLDKGISINNMMEHWDYLQLTVAMYINSDSVNPAMLPGSSNGGGKV 347
Query: 294 ETHFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRI 353
+ G + L K + + K FS R+VI+ D I+EV +P +A+ +
Sbjct: 348 KPIRGFCQRL-----KGKQGRFRGNLSGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVL 402
Query: 354 TFEERVNSHNMCYLQKLV--------DENLCLAYKEGVSTYSLREGS--KGHTYLKPGQI 403
T+ E+V +N LQ+L+ N L E + +LR G K L+ G +
Sbjct: 403 TYPEKVTRYNRHKLQELIVNGPNVHPGANYLLKRNED-ARRNLRYGDRMKLAKNLQIGDV 461
Query: 404 VHRRIMDGDIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFY 463
V R + DGD+V NR P+ H+ S+ + I T ++N +C P ADFDGD ++L
Sbjct: 462 VERHLEDGDVVLFNRQPSLHRLSILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHV 521
Query: 464 PQSLAAKAEVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKK-GFMDRAAANQMAM 522
PQ+ A+AE + L V+ LL+ K F DRA Q+
Sbjct: 522 PQTEEARAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFYDRATLTQLLS 581
Query: 523 FLS-----LPLPQPALLKAGSGDCYWTSTQILQC-------------------------- 551
+S +P PA++K WT Q+
Sbjct: 582 MMSDGIEHFDIPPPAIMKPYY---LWTGKQVFSLLIKPNHNSPVVINLDAKNKVFVPPKS 638
Query: 552 -ALPLSFDCTGGRYLIRESDILGFDLGRDVL-PAVINEIAASVFFGKGPQEALNFFDVLQ 609
+LP G +IR S IL + + VL + + ++ GPQEA N + +
Sbjct: 639 KSLPNEMSQNDGFVIIRGSQILSGVMDKSVLGDGKKHSVFYTILRDYGPQEAANAMNRMA 698
Query: 610 PFLMECIFSNGFSVGLHDFSISGAVKRITDRNIGKVSPLLYQLRFIYN--ELVAQQLEKH 667
+ + GFS+G++D + + +K+ + + +L ++N EL Q
Sbjct: 699 KLCARFLGNRGFSIGINDVTPADDLKQKKEELVEIAYRKCDELITLFNKGELETQPGCNE 758
Query: 668 MQDIELPAIKFASK-SSRLGD--------------MIDSKSKSALDKVTQQIGFLGQQLF 712
Q +E SK +GD M SK + V+Q + +GQQ+
Sbjct: 759 EQTLEAKIGGLLSKVREEVGDVCINELDNWNAPLIMATCGSKGSTLNVSQMVAVVGQQI- 817
Query: 713 VRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREI 772
+ G G + HF P ++ G ++ FF GL P E L H+IS RE
Sbjct: 818 ISGNRVPDGFQDRSLPHFP-----KNSKTPQSK-GFVRNSFFSGLSPPEFLFHAISGREG 871
Query: 773 MVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 819
+V ++ +E G + + LM L D+ YD TVR +N I+QF YG
Sbjct: 872 LVDTAVKTAETGYMSRRLMKSLEDLSCQYDNTVR-TSANGIVQFTYG 917
>C7GMM0_YEAS2 (tr|C7GMM0) DNA-directed RNA polymerase OS=Saccharomyces cerevisiae
(strain JAY291) GN=RPO31 PE=3 SV=1
Length = 1460
Score = 175 bits (443), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 208/887 (23%), Positives = 348/887 (39%), Gaps = 136/887 (15%)
Query: 45 NPFLGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLK- 103
+P +G+ C +C + A C GHFG+++L +P++H + ++L +C NC
Sbjct: 55 DPKMGVSSSSLECATCHGNLAS-CHGHFGHLKLALPVFHIGYFKATIQILQGICKNCSAI 113
Query: 104 ----------MKKTKFPSSSS----GLAQRLLSPC-----CQEPNAAQVSIREVKTGDGA 144
+ + + P + G+ +++L C C A ++ K GA
Sbjct: 114 LLSETDKRQFLHELRRPGVDNLRRMGILKKILDQCKKQRRCLHCGALNGVVK--KAAAGA 171
Query: 145 CYLVLKV---------SKSKMQDGFWRF-----------LDKYGYRYEVDHTRALLPCEV 184
LK+ KS + W L++Y R D L P +
Sbjct: 172 GSAALKIIHDTFRWVGKKSAPEKDIWVGEWKEVLAHNPELERYVKRCMDD----LNPLKT 227
Query: 185 MEMIKRFPLETKKKLAGKGYFPQ---DGYVIKYLPVPPNCLXXXXXXXXXXXXXXXXXXT 241
+ + K+ + L P + Y+ +YLP PP C+
Sbjct: 228 LNLFKQIKSADCELLGIDATVPSGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTV 287
Query: 242 FLRKLLRKVEVIRSSRSGEPNFESHQVEANDLQSVVDQYL--------QIRGCAKPARDI 293
L +++ +I++ + + + LQ V Y+ + G + +
Sbjct: 288 KLTEIVWTSSLIKAGLDKGISINNMMEHWDYLQLTVAMYINSDSVNPAMLPGSSNGGGKV 347
Query: 294 ETHFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRI 353
+ G + L K + + K FS R+VI+ D I+EV +P +A+ +
Sbjct: 348 KPIRGFCQRL-----KGKQGRFRGNLSGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVL 402
Query: 354 TFEERVNSHNMCYLQKLV--------DENLCLAYKEGVSTYSLREGS--KGHTYLKPGQI 403
T+ E+V +N LQ+L+ N L E + +LR G K L+ G +
Sbjct: 403 TYPEKVTRYNRHKLQELIVNGPNVHPGANYLLKRNED-ARRNLRYGDRMKLAKNLQIGDV 461
Query: 404 VHRRIMDGDIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFY 463
V R + DGD+V NR P+ H+ S+ + I T ++N +C P ADFDGD ++L
Sbjct: 462 VERHLEDGDVVLFNRQPSLHRLSILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHV 521
Query: 464 PQSLAAKAEVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKK-GFMDRAAANQMAM 522
PQ+ A+AE + L V+ LL+ K F DRA Q+
Sbjct: 522 PQTEEARAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFYDRATLTQLLS 581
Query: 523 FLS-----LPLPQPALLKAGSGDCYWTSTQILQC-------------------------- 551
+S +P PA++K WT Q+
Sbjct: 582 MMSDGIEHFDIPPPAIMKPYY---LWTGKQVFSLLIKPNHNSPVVINLDAKNKVFVPPKS 638
Query: 552 -ALPLSFDCTGGRYLIRESDILGFDLGRDVL-PAVINEIAASVFFGKGPQEALNFFDVLQ 609
+LP G +IR S IL + + VL + + ++ GPQEA N + +
Sbjct: 639 KSLPNEMSQNDGFVIIRGSQILSGVMDKSVLGDGKKHSVFYTILRDYGPQEAANAMNRMA 698
Query: 610 PFLMECIFSNGFSVGLHDFSISGAVKRITDRNIGKVSPLLYQLRFIYN--ELVAQQLEKH 667
+ + GFS+G++D + + +K+ + + +L ++N EL Q
Sbjct: 699 KLCARFLGNRGFSIGINDVTPADDLKQKKEELVEIAYRKCDELITLFNKGELETQPGCNE 758
Query: 668 MQDIELPAIKFASK-SSRLGD--------------MIDSKSKSALDKVTQQIGFLGQQLF 712
Q +E SK +GD M SK + V+Q + +GQQ+
Sbjct: 759 EQTLEAKIGGLLSKVREEVGDVCINELDNWNAPLIMATCGSKGSTLNVSQMVAVVGQQI- 817
Query: 713 VRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREI 772
+ G G + HF P ++ G ++ FF GL P E L H+IS RE
Sbjct: 818 ISGNRVPDGFQDRSLPHFP-----KNSKTPQSK-GFVRNSFFSGLSPPEFLFHAISGREG 871
Query: 773 MVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 819
+V ++ +E G + + LM L D+ YD TVR +N I+QF YG
Sbjct: 872 LVDTAVKTAETGYMSRRLMKSLEDLSCQYDNTVR-TSANGIVQFTYG 917
>G9M7Z8_9FUNG (tr|G9M7Z8) DNA-directed RNA polymerase (Fragment) OS=Olpidium
bornovanus GN=RPB1 PE=3 SV=1
Length = 838
Score = 175 bits (443), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 156/563 (27%), Positives = 258/563 (45%), Gaps = 62/563 (11%)
Query: 314 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLV-- 371
+++ + K FS+R+VITGD I+EVGIP IA+ +TF E V +N+ +Q+LV
Sbjct: 81 RLRGNLMGKRVDFSARTVITGDPNLSIDEVGIPRSIARNLTFPEIVTPYNIDAMQQLVRN 140
Query: 372 --DENLCLAY--KEGVSTYSLREGSK-GHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHS 426
+E+ Y ++ LR + G L+ G V R ++DGD + NR P+ HK S
Sbjct: 141 GPNEHPGAKYVIRDTGERIDLRYHRRSGDIPLQIGWRVERHLVDGDTIVFNRQPSLHKMS 200
Query: 427 LQALVVYIHDDHTVKINPLICGPL----GADFDGDCVHLFYPQSLAAKAEVVELFSVEKQ 482
+ V I T ++N +CGP+ ADFDGD +++ PQSL AKAE+ E+ V KQ
Sbjct: 201 MMGHKVRIMPYSTFRLNLSVCGPISHPYNADFDGDEMNMHVPQSLEAKAEINEICMVPKQ 260
Query: 483 LLSSHXXXXXXXXXXXXXXXXXXXVKKG-FMDRAAANQMAMFL---SLPLPQPALLKAGS 538
+++ K+ F+D+A MAM++ LP PA+LK
Sbjct: 261 IVAPASSKPCMGIVQDTLCGIRKMTKRDVFLDKAFVMNMAMWVPDWDGVLPIPAILKPKP 320
Query: 539 GDCYWTSTQILQCALPLSF---------------DCTGG--RYLIRESDILGFDLGRDVL 581
WT Q+L +P D + G + +I ++L + + +
Sbjct: 321 ---LWTGKQMLSMLIPKGVNVQTFHSEHPDNELTDISPGDTKVIIENGELLAGIVCKKTV 377
Query: 582 PAVINEIAASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHDF--------SISGA 633
A + ++ KGP+ +F+ Q + +F GFS+G+ D +++ A
Sbjct: 378 GASAGGLVHVIWQEKGPEVCKTWFNGTQRLVNYWLFQYGFSIGIGDTVADTKTMQNVTSA 437
Query: 634 VKRITDRNIGKVSPLLYQLR------FIYNELVAQQLEKHMQDIELPAIKFASKS----S 683
+++ +R + ++ +Q R E Q+ + A K A +S +
Sbjct: 438 IQQAKER-VAELILEAHQDRMKPMPGMTIRETFEAQVNSALNTARDQAGKSAQQSLNPEN 496
Query: 684 RLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPS 743
+ M+ + SK + ++Q +GQQ V G+ G + L C D P
Sbjct: 497 NVKQMVVAGSKGSYINISQMTACVGQQ-NVEGKRIPFGF-----KYRTLPCFTKDDHTPE 550
Query: 744 AEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDG 803
+ G ++ + GL P E H++ RE ++ ++ +E G + + L+ L DV+V YDG
Sbjct: 551 SR-GFVENSYLRGLTPQEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKALEDVMVKYDG 609
Query: 804 TVRNVCSNSIIQFEYGLKAGDNA 826
TVRN N +IQF YG D A
Sbjct: 610 TVRN-SMNEVIQFSYGEDGLDGA 631
>B9WN64_CANDC (tr|B9WN64) DNA-directed RNA polymerase OS=Candida dubliniensis
(strain CD36 / ATCC MYA-646 / CBS 7987 / NCPF 3949 /
NRRL Y-17841) GN=CD36_35480 PE=3 SV=1
Length = 1735
Score = 175 bits (443), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 197/838 (23%), Positives = 347/838 (41%), Gaps = 87/838 (10%)
Query: 45 NPFLGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKM 104
+P LG RC++CG A +C GHFG+IEL P++H ++++KK VC++C K+
Sbjct: 56 DPRLGSIDRNFRCQTCGEDMA-ECPGHFGHIELAKPVFHIGFIAKIKKACESVCMHCGKL 114
Query: 105 -----------------KKTKFPSSSSGLAQRLLSPCCQEPNAAQVSIREVKTGDGACYL 147
K +F + S +++ C + N +++ + + G G
Sbjct: 115 LLDETNPAMAQAIKIRDPKKRFNAVWSLCKSKMV--CETDNNEDEMTDQPSRGGCGHPQP 172
Query: 148 VLKVSKSKMQDGFWRFLDKYGYRYEVDHTRALLPCEVMEMIKRFPLETKKKLAGKGYFPQ 207
++ K+ G W+ Y E R L P E++ + K E K+ + +
Sbjct: 173 TIRRDGLKLW-GTWKQNKNYDDN-EQPERRLLTPSEILNVFKHISPEDCHKMGFNEDYAR 230
Query: 208 DGYVIKYLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLR-KVEVIRSSRSGEPNFESH 266
+++ + P L +++ + V R G P
Sbjct: 231 PEWMLITVLPVPPPPVRPSIAFNETARGEDDLTFKLADIIKANINVQRLETDGSPQHVIS 290
Query: 267 QVEANDLQSVVDQYL------QIRGCAKPARDIETHFGVNKELSDASNKAWLDKMKSLFI 320
+ EA LQ V Y+ Q + K R I++ A K +++ +
Sbjct: 291 EFEAL-LQFHVATYMDNDIAGQPQALQKTGRPIKS--------IRARLKGKEGRLRGNLM 341
Query: 321 SKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLV----DENLC 376
K FS+R+VI+GD +++VG+P IA+ +T+ E V +N+ L +LV +E+
Sbjct: 342 GKRVDFSARTVISGDPNLDLDQVGVPISIAKTLTYPEIVTPYNIHKLTELVRNGPNEHPG 401
Query: 377 LAY--KEGVSTYSLREGSK-GHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALVVY 433
Y ++ LR + G L+ G V R +MD D V NR P+ HK S+ A V
Sbjct: 402 AKYVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNRQPSLHKMSMMAHRVR 461
Query: 434 IHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHXXXXXX 493
+ T ++N + P ADFDGD ++L PQS +AE+ ++ +V Q++S
Sbjct: 462 VMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSPETRAELSQICAVPLQIVSPQSNKPVM 521
Query: 494 XXXXXXX-XXXXXXVKKGFMDRAAANQMAMFLSLPLPQPALLKAGSGDCYWTSTQILQCA 552
++ F++ M ++ WT Q+L A
Sbjct: 522 GIVQDTLCGIRKMTLRDIFIEYDQVMNMCYWIPNWDGVIPPPAVVKPKPLWTGKQLLSLA 581
Query: 553 LPLSFDCT---GGRYLIRESDILGFDLGRDVLPAVINE---------IAASVFFGKGPQE 600
+P GGR L+ D + +++ V+++ + +V KGP+
Sbjct: 582 IPKGIHLQRFDGGRDLLSPKDTGMLIVDGEIMFGVVDKKTVGATGGGLIHTVMREKGPKV 641
Query: 601 ALNFFDVLQPFLMECIFSNGFSVGLHDFSISGAVKRITDRNI----GKVSPLLYQLRFIY 656
F +Q + + NGFS+G+ D R + I KV ++ + +
Sbjct: 642 CAELFSSIQKVVNYWLLHNGFSIGIGDTIADAQTMRDVTKTIQEAKQKVQEIIIDAQ--H 699
Query: 657 NEL-------VAQQLEKHMQDIELPAIKFASKSSRLG--------DMIDSKSKSALDKVT 701
N+L + + E ++ + A A +S+ + M+ S SK + ++
Sbjct: 700 NKLEPEPGMTLRESFEHNVSRVLNQARDTAGRSAEMSLKDLNNVKQMVTSGSKGSFINIS 759
Query: 702 QQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFE 761
Q +GQQ+ V G+ G + HF D Y G ++ + GL P E
Sbjct: 760 QMSACVGQQI-VEGKRIPFGFGDRSLPHFT------KDDYSPESKGFVENSYLRGLTPQE 812
Query: 762 ELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 819
H+++ RE ++ ++ +E G + + L+ L D++V YDGT RN + IIQF YG
Sbjct: 813 FFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGD-IIQFIYG 869
>G1PCY5_MYOLU (tr|G1PCY5) DNA-directed RNA polymerase OS=Myotis lucifugus PE=3
SV=1
Length = 1972
Score = 175 bits (443), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 209/873 (23%), Positives = 346/873 (39%), Gaps = 135/873 (15%)
Query: 45 NPFLGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKM 104
+P G+ GRC++C +C GHFG+IEL P++H + + K+L VC C K+
Sbjct: 59 DPRQGVIERTGRCQTCA-GNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKL 117
Query: 105 -------KKTKFPSSSSGLAQRLLSPC----------------------CQEPNAAQVSI 135
K + S G ++ L+ ++P +
Sbjct: 118 LVDSNNPKIKDILAKSKGQPKKRLTHVYDLCKSFAHLPSAGEEMDNKFGVEQPEGDEDLT 177
Query: 136 REVKTGDGAC-YLVLKVSKSKMQ-DGFWRFLDKYGYRYEVDHTRALLPCEVMEMIKRFPL 193
+E K G G C ++ +S ++ W+ +++ ++ L P V E+ KR
Sbjct: 178 KE-KKGHGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKI----LLSPERVHEIFKRISD 232
Query: 194 ETKKKLAGKGYFPQDGY-VIKYLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEV 252
E L + + + + ++ LPVPP + KL V++
Sbjct: 233 EECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDD----LTHKLADIVKI 288
Query: 253 IRSSRSGEPNFESHQVEANDLQ-------SVVDQYLQ--IRGCAKPARDIETHFGVNKEL 303
R E N + V A D++ ++VD L R K R +++ + + L
Sbjct: 289 NNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKS---LKQRL 345
Query: 304 SDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHN 363
K +++ + K FS+R+VIT D I++VG+P IA +TF E V N
Sbjct: 346 -----KGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFN 400
Query: 364 MCYLQKLVDENLCLAYKEGVSTYS--------------LREGSK-GHTYLKPGQIVHRRI 408
+ LQ+LV + G S Y LR K +L+ G V R +
Sbjct: 401 IDRLQELV--------RRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHM 452
Query: 409 MDGDIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLA 468
DGDIV NR PT HK S+ V I T ++N + P ADFDGD ++L PQSL
Sbjct: 453 CDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLE 512
Query: 469 AKAEVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKKG-FMDRAAANQMAMFLSL- 526
+AE+ EL V + +++ K+ F++R + MFLS
Sbjct: 513 TRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTW 572
Query: 527 --PLPQPALLKAGSGDCYWTSTQILQCALPLSFDCT-----------GGRY--------- 564
+PQPA+LK WT QI +P +C G Y
Sbjct: 573 DGKVPQPAILKPRP---LWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHISPGDTK 629
Query: 565 -LIRESDILGFDLGRDVLPAVINEIAASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSV 623
++ +++ L + L + + G F+ +Q + + G ++
Sbjct: 630 VVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTI 689
Query: 624 GLHDF--------SISGAVKR--------ITDRNIGKVSPLL-YQLRFIYNELVAQQLEK 666
G+ D I +K+ I + ++ P LR + V + L
Sbjct: 690 GIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILND 749
Query: 667 HMQDIELPAIKFASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDV 726
A K S+ + M+ S +K + ++Q I +GQQ V G+ G
Sbjct: 750 ARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQ-NVEGKRIPFGFKHRT 808
Query: 727 ASHFKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTL 786
HF +K DY + G ++ + GL P E H++ RE ++ ++ +E G +
Sbjct: 809 LPHF-IKDDYGPES-----RGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYI 862
Query: 787 FKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 819
+ L+ + V+V YD TVRN N ++Q YG
Sbjct: 863 QRRLIKSMESVMVKYDATVRNSI-NQVVQLRYG 894
>G8YNQ4_PICSO (tr|G8YNQ4) DNA-directed RNA polymerase OS=Pichia sorbitophila
(strain ATCC MYA-4447 / BCRC 22081 / CBS 7064 / NBRC
10061 / NRRL Y-12695) GN=Piso0_001648 PE=3 SV=1
Length = 1454
Score = 175 bits (443), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 211/885 (23%), Positives = 349/885 (39%), Gaps = 143/885 (16%)
Query: 48 LGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLK---- 103
+G+ C +C + A C GHFG+I L +P++H + + +L +C NC
Sbjct: 58 MGISSNSSECSTCHGNLAS-CHGHFGHIRLALPVFHVGYFKNIMSVLQSICKNCGAILLD 116
Query: 104 -------MKKTKFPSSSS----GLAQRLLSPC-----CQEPNAAQVSIREVKTGDGACYL 147
+ + + P+ + + +R+L C C + N +++ +G G
Sbjct: 117 ETTRRSFLNELRRPNLDNLKRMKILKRILEQCKKQRRCVKCNHINGVVKKAASGSGPA-- 174
Query: 148 VLKV---------SKSKMQDGFWRF-----------LDKYGYRYEVDHTRALLPCEVMEM 187
LK+ K + W L+K+ R D L P +V+ +
Sbjct: 175 ALKIVHDTFRWIGKKPTPEKALWNEEFDEVFARNPELEKFSKRVYDD----LNPLKVLNL 230
Query: 188 IKRFPLETKKKLA---GKGYFPQDGYVIKYLPVPPNCLXXXXXXXXXXXXXXXXXXTFLR 244
K+ + L +G P+ Y+ +YLP PP C+ L
Sbjct: 231 FKQIEPADCELLGIDPARGGRPE-MYIWRYLPAPPVCIRPSVMMDTQSNEDDLTVK--LT 287
Query: 245 KLLRKVEVIRSSRSGEPNFESHQVEANDLQSVVDQY----------LQIRGCAKPARDIE 294
+++ +IR+ + + + LQ V Y L G +K A+ I
Sbjct: 288 EIVWTSSLIRAGIEKGITINNLMEQWDYLQLSVAMYINSDAANSAFLPSSGGSKSAKPIR 347
Query: 295 THFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRIT 354
G + L K + + K FS R+V++ D RI+EV +P +A+ +T
Sbjct: 348 ---GFCQRL-----KGKQGRFRGNLSGKRVDFSGRTVVSPDPNLRIDEVAVPDRVAKVLT 399
Query: 355 FEERVNSHNMCYLQKLV--------DENLCLAYKEGVSTYSLREGS--KGHTYLKPGQIV 404
+ E +N LQ+L+ N + E + +LR G K L G +V
Sbjct: 400 YPEMCTRYNRKKLQRLILNGPNTYPGANYLMKQNEA-AKRNLRFGDRVKLAKNLHIGDVV 458
Query: 405 HRRIMDGDIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYP 464
R I DGD+V NR P+ H+ S+ + + T ++N +C P ADFDGD ++L P
Sbjct: 459 ERHIEDGDVVLFNRQPSLHRLSILSHFAKVRPWRTFRLNECVCTPYNADFDGDEMNLHVP 518
Query: 465 QSLAAKAEVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKK-GFMDRAAANQMAMF 523
Q+ A+AE + L V+ LL+ K F DRAA QM
Sbjct: 519 QTEEARAEAMNLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFYDRAALVQMLSM 578
Query: 524 LS-----LPLPQPALLKAGSGDCYWTSTQILQCAL------------------------- 553
+S +P PA+ K WT Q+ +
Sbjct: 579 MSDANVQYDIPPPAIFKPV---MLWTGKQLFSLLIRPNKKSKVLINLDAKNKTFIPPLKG 635
Query: 554 -PLSFDCTGGRYLIRESDILGFDLGRDVL-PAVINEIAASVFFGKGPQEALNFFDVLQPF 611
P G +IR S IL + + +L + + ++ GP EA N + +
Sbjct: 636 FPNEMSQNDGFVVIRGSQILSGVMDKSLLGDGKKHSVFYTILRDYGPDEAANAMNRMAKL 695
Query: 612 LMECIFSNGFSVGLHDFSISGAVKRITDRNIGKVSPLLYQLRFIYN--ELVAQQLEKHMQ 669
+ + GFS+G++D +K+ + + + +L YN +L Q Q
Sbjct: 696 CARFMGNRGFSIGINDVIPRSELKQKKELMVEQAYLKCDELIDSYNRGKLETQPGCNEEQ 755
Query: 670 DIELPAIKFASK-SSRLGDM----IDSK----------SKSALDKVTQQIGFLGQQLFVR 714
+E SK ++G++ +DS SK + V+Q + +GQQ+ +
Sbjct: 756 TLEAKIGGLLSKVREQVGEICIKELDSANAPLIMATCGSKGSTLNVSQMVAVVGQQI-IS 814
Query: 715 GRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMV 774
G G + HF P ++ G ++ FF GL P E L H+IS RE +V
Sbjct: 815 GNRVPDGFQDRSLPHFT-----KNSKTPQSK-GFVRNSFFSGLSPTEFLFHAISGREGLV 868
Query: 775 RSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 819
++ +E G + + LM L D+ YD TVRN SN ++QF YG
Sbjct: 869 DTAVKTAETGYMSRRLMKSLEDLSTQYDNTVRN-SSNGVVQFTYG 912
>F1Q9K4_DANRE (tr|F1Q9K4) DNA-directed RNA polymerase OS=Danio rerio GN=polr2a
PE=3 SV=1
Length = 1965
Score = 175 bits (443), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 206/869 (23%), Positives = 341/869 (39%), Gaps = 130/869 (14%)
Query: 45 NPFLGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKM 104
+P G+ GRC++C +C GHFG+IEL P++H ++++ K+L VC C K+
Sbjct: 57 DPRQGVIERSGRCQTCA-GNMTECPGHFGHIELAKPVFHVGFITKIMKVLRCVCFFCSKL 115
Query: 105 KKTKFPSSSSGLAQRLLSPCCQEPNAAQVSIREVKTGDGAC---------YLVLK----- 150
+++ + +L+ +P + ++ G C + V +
Sbjct: 116 ----LVDANNPKIKDILTKSKGQPRKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPESED 171
Query: 151 VSKSKMQDGFWRF--------LDKYGYRYEVDHTRA-----LLPCEVMEMIKRFPLETKK 197
++K K G R+ L+ Y V+ L P V E+ KR E
Sbjct: 172 ITKEKGHGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRIADEEDI 231
Query: 198 KLA-GKGYFPQDGYVIKYLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEVIRSS 256
L Y + ++ LPVPP + KL V++
Sbjct: 232 ILGMDPKYARPEWMIVTVLPVPPLAVRPAVVMQGSARNQDD----LTHKLADIVKINNQL 287
Query: 257 RSGEPNFESHQVEANDLQ-------SVVDQYLQ--IRGCAKPARDIETHFGVNKELSDAS 307
+ E + + V A D++ ++VD L R K R +++ + + L
Sbjct: 288 KRNEQSGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKS---IKQRL---- 340
Query: 308 NKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYL 367
K +++ + K FS+R+VIT D +I++VG+P IA +TF E V N+ L
Sbjct: 341 -KGKEGRVRGNLMGKRVDFSARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRL 399
Query: 368 QKLVDENLCLAYKEGVSTYS--------------LREGSK-GHTYLKPGQIVHRRIMDGD 412
Q+LV + G S Y LR K +L+ G V R + DGD
Sbjct: 400 QELV--------RRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQIGYKVERHMCDGD 451
Query: 413 IVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAE 472
I+ NR PT HK S+ V I T ++N + P ADFDGD ++L PQSL +AE
Sbjct: 452 IIVFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAE 511
Query: 473 VVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKKG-FMDRAAANQMAMFLSL---PL 528
+ EL V + +++ K+ F++R + MFLS +
Sbjct: 512 IQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKV 571
Query: 529 PQPALLKAGSGDCYWTSTQILQCALPLSFDCT-----------GGRY----------LIR 567
PQPA+LK WT QI +P + G Y ++
Sbjct: 572 PQPAILKPRP---LWTGKQIFSLIIPGHINAIRTHSTHPDEEDSGPYKNISPGDTKVIVE 628
Query: 568 ESDILGFDLGRDVLPAVINEIAASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHD 627
+++ L + L + + G F+ +Q + + G S+G+ D
Sbjct: 629 NGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVVNNWLLIEGHSIGIGD 688
Query: 628 FSISGAVKRITDRNIGKVSPLLYQ-----------------LRFIYNELVAQQLEKHMQD 670
A + I K + + LR + V + L
Sbjct: 689 SIADKATYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDK 748
Query: 671 IELPAIKFASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHF 730
A K S+ + M+ + SK + ++Q I +GQQ V G+ G HF
Sbjct: 749 TGSSAQKSLSEYNNFKSMVVAGSKGSKINISQVIAVVGQQ-NVEGKRIPFGFKHRTLPHF 807
Query: 731 KLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNL 790
+K DY + G ++ + GL P E H++ RE ++ ++ +E G + + L
Sbjct: 808 -IKDDYGPES-----RGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRL 861
Query: 791 MAILRDVVVCYDGTVRNVCSNSIIQFEYG 819
+ + V+V YD TVRN N ++Q YG
Sbjct: 862 IKSMESVMVKYDATVRNSI-NQVVQLRYG 889
>J3PS24_PUCT1 (tr|J3PS24) DNA-directed RNA polymerase OS=Puccinia triticina
(isolate 1-1 / race 1 (BBBD)) GN=PTTG_01940 PE=3 SV=1
Length = 1794
Score = 175 bits (443), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 139/553 (25%), Positives = 245/553 (44%), Gaps = 50/553 (9%)
Query: 314 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLVDE 373
+++ + K FS+R+VITGD ++++VG+P+ IA+ +T+ ERV +N+ YLQ+LV
Sbjct: 355 RLRGNLMGKRVDFSARTVITGDPNLQLDQVGVPYSIARNLTYPERVTPYNISYLQELVQN 414
Query: 374 NLC------LAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSL 427
++ LR + T+L+ G IV R + DGD V NR P+ HK S+
Sbjct: 415 GPTEYPGARYVVRDTGDRIDLRYNKRADTFLQYGWIVERHLKDGDYVLFNRQPSLHKMSM 474
Query: 428 QALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSH 487
+ + + T ++N + P ADFDGD ++L PQS +AE+ ++ V + ++S
Sbjct: 475 MSHRIKLMPYSTFRLNLSVTPPYNADFDGDEMNLHVPQSEETRAELAQIAWVPRNIVSPQ 534
Query: 488 XXXXXXXXXXXXX-XXXXXXVKKGFMDRAAANQMAMFLS---LPLPQPALLKAGSGDCYW 543
++ FMDR + +++ +P PA+LK W
Sbjct: 535 ANKPVMGIVQDTLCGVRKFTLRDCFMDRDFVQNILLWVPGWDGVVPPPAILKPKP---LW 591
Query: 544 TSTQILQCALP------------LSFDCTGGRYLIRESDILGFDLGRDVLPAVINEIAAS 591
T QIL +P S I + +I+ + + + A +
Sbjct: 592 TGKQILSMCIPKGINLLRDDENQTSLPIADKGLWIEDGEIIYGVVDKKCVGASQGGLIHV 651
Query: 592 VFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHDFS------------ISGAVKRITD 639
+F KGP+ F +Q + + +GFS+G+ D IS A + +++
Sbjct: 652 IFREKGPEVTRGLFSGIQMVVNYWLLHHGFSIGIGDTVPDKATMEAITNFISEAKREVSE 711
Query: 640 R-NIGKVSPLLYQLRFIYNELVAQQLEKHMQDIELPAIKFASKS----SRLGDMIDSKSK 694
++ + L + E ++ + + A + A +S + + M+ + SK
Sbjct: 712 TISLAQEDKLQAEPGMTIRESFEAKVNRALNTARDNAGRSAEQSLKDDNNVKQMVTAGSK 771
Query: 695 SALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGCFF 754
+ ++Q +GQQ V G+ G HF D Y G ++ +
Sbjct: 772 GSFINISQMSACVGQQ-SVEGKRIPYGFKYRTLPHFT------KDDYSPESRGFVENSYL 824
Query: 755 HGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSII 814
GL P E H+++ RE ++ ++ +E G + + L+ L DV+V YDGTVRN + I+
Sbjct: 825 RGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLLKALEDVMVTYDGTVRNSLGD-IV 883
Query: 815 QFEYGLKAGDNAS 827
QF YG D +
Sbjct: 884 QFVYGEDGVDGGT 896
>F1KQ77_ASCSU (tr|F1KQ77) DNA-directed RNA polymerase OS=Ascaris suum PE=2 SV=1
Length = 1840
Score = 175 bits (443), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 208/851 (24%), Positives = 332/851 (39%), Gaps = 104/851 (12%)
Query: 45 NPFLGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKM 104
+P G+ GRC +C +A C GHF +I L P++H VS+ K+L VC C ++
Sbjct: 83 DPRQGVVDRRGRCTTCCGGQA-DCPGHFAHITLAKPVFHVGLVSKTLKVLRCVCFYCSRV 141
Query: 105 -------KKTKFPSSSSGLAQR---LLSPCCQEPNAAQVSIREV----KTGDGACYLVLK 150
+ + S ++G +R L+ C+ A + EV + AC +
Sbjct: 142 LVSKNNERVRRILSKTTGNPRRRFELIYALCKTKTACDDADEEVDIIEEYAKSACG---R 198
Query: 151 VSKSKMQDGF-----WRFLDKYGYRYEVDHTRALLPCEVMEMIKRFPLETKKKLAGKGYF 205
S + G W+ + + +H L V+E+ KR E L F
Sbjct: 199 YQPSYRRTGIEITAEWK---RRANDEQQEHKLVLSAERVLEIFKRIADEDCIVLGMDPRF 255
Query: 206 PQ-DGYVIKYLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEVIRSSRSGEPNFE 264
+ D +I+ LPVPP + KL V + E N
Sbjct: 256 ARPDWMIIQELPVPPLAVRPAVATFGSARNQDD----LTHKLSDIVNANNQLKRNERNGA 311
Query: 265 SHQVEANDLQSVVDQYLQIRGCAKPARDIETHFGVNKELSDASN--KAWLDKMKSLFISK 322
+ V A+DL+ + + P T G + L K +++ + K
Sbjct: 312 AAHVIADDLKLLQYHVATFIDNSVPGLPTATQKG-GRPLKSLKQRLKGKEGRIRGNLMGK 370
Query: 323 GSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLVDENLCLAYKEG 382
FS+R+VIT D I+ VG+P IAQ +TF E V N+ LQ+LV N A G
Sbjct: 371 RVDFSARTVITPDPNLPIDTVGVPRTIAQNMTFPEIVTPFNIDELQELV--NRGDAQYPG 428
Query: 383 VSTYSLREGSK----------GHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALVV 432
+ Y +R + ++PG V R + DGDI+ NR PT HK S+ V
Sbjct: 429 -AKYVIRSNGERVDLRYHPRASDLVIQPGYKVERHMRDGDIIVFNRQPTLHKMSMMGHKV 487
Query: 433 YIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHXXXXX 492
I T ++N + P ADFDGD ++L PQSL KAE+ E+ V +QL++
Sbjct: 488 KILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETKAEIAEIAMVPRQLITPQANKPV 547
Query: 493 XXXXXXXXXXXXXXVKK-GFMDRAAANQMAMFLSLP-----LPQPALLKAGSGDCYWTST 546
K+ F++ AA M + + +P +PQPA+LK WT
Sbjct: 548 MGIVQDALTAVYMLTKRDTFIE--AARLMDLLMHMPDWNAKIPQPAILKPKR---LWTGK 602
Query: 547 QILQCALPLSF-----------DCTGGRY----------LIRESDILGFDLGRDVLPAVI 585
Q+ +P D G Y L+ +L + +
Sbjct: 603 QLFSLIIPGEVNVELNHSTHPDDENAGEYKWISPGDTKVLVERGVLLSGIICSRTVGRSA 662
Query: 586 NEIAASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHDFSISGAVKRITDRNIGKV 645
+ V G A F+ +Q + + G ++G+ D A I K
Sbjct: 663 GSLLHVVTLELGFDVAAQFYSQIQTTANAWLLAEGQTIGIADAIADRATYSHIQETIKKA 722
Query: 646 SPLLYQ---------LRFIYNELVAQQLEKHMQDI--------ELPAIKFASKSSRLGDM 688
+ + ++ + Q E + +I A + S + M
Sbjct: 723 KMDVVEVIERARKDSIKVTRGNTLLQTFESKINNILNNARDRTGSSAQRSLSADNNFKAM 782
Query: 689 IDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGL 748
+ + SK + ++Q I +GQQ V G+ G HF D P A+ G
Sbjct: 783 VVAGSKGSKINISQVIACVGQQ-NVEGKRIPFGFRHRTLPHF-----IRDDCGPEAK-GF 835
Query: 749 LKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNV 808
++ + GL P E H++ RE ++ ++ +E G + + LM + ++V YDGTVRN
Sbjct: 836 VENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLMKAMESIMVNYDGTVRNA 895
Query: 809 CSNSIIQFEYG 819
++Q YG
Sbjct: 896 LGE-VVQLSYG 905
>D3ZGF8_RAT (tr|D3ZGF8) DNA-directed RNA polymerase OS=Rattus norvegicus
GN=Polr2a PE=2 SV=1
Length = 1932
Score = 174 bits (442), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 210/870 (24%), Positives = 344/870 (39%), Gaps = 131/870 (15%)
Query: 45 NPFLGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKM 104
+P G+ GRC++C +C GHFG+IEL P++H + + K+L VC C K+
Sbjct: 59 DPRQGVIERTGRCQTCA-GNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKL 117
Query: 105 KKTKFPSSSSGLAQRLLSPCCQEPNAAQVSIREVKTGDGAC---------YLVLK----- 150
S++ + +L+ +P + ++ G C + V +
Sbjct: 118 ----LVDSNNPKIKDILAKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDE 173
Query: 151 -VSKSKMQDGFWRF--------LDKYGYRYEVDHTRA-----LLPCEVMEMIKRFPLETK 196
++K K G R+ L+ Y V+ L P V E+ KR E
Sbjct: 174 DLTKEKGHGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEC 233
Query: 197 KKLAGKGYFPQDGY-VIKYLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEVIRS 255
L + + + + ++ LPVPP + KL V++
Sbjct: 234 FVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDD----LTHKLADIVKINNQ 289
Query: 256 SRSGEPNFESHQVEANDLQ-------SVVDQYLQ--IRGCAKPARDIETHFGVNKELSDA 306
R E N + V A D++ ++VD L R K R +++ + + L
Sbjct: 290 LRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKS---LKQRL--- 343
Query: 307 SNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCY 366
K +++ + K FS+R+VIT D I++VG+P IA +TF E V N+
Sbjct: 344 --KGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDR 401
Query: 367 LQKLVDENLCLAYKEGVSTYS--------------LREGSK-GHTYLKPGQIVHRRIMDG 411
LQ+LV + G S Y LR K +L+ G V R + DG
Sbjct: 402 LQELV--------RRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDG 453
Query: 412 DIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKA 471
DIV NR PT HK S+ V I T ++N + P ADFDGD ++L PQSL +A
Sbjct: 454 DIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRA 513
Query: 472 EVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKKG-FMDRAAANQMAMFLSL---P 527
E+ EL V + +++ K+ F++R + MFLS
Sbjct: 514 EIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGK 573
Query: 528 LPQPALLKAGSGDCYWTSTQILQCALPLSFDCT-----------GGRY----------LI 566
+PQPA+LK WT QI +P +C G Y ++
Sbjct: 574 VPQPAILKPRP---LWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVV 630
Query: 567 RESDILGFDLGRDVLPAVINEIAASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLH 626
+++ L + L + + G F+ +Q + + G ++G+
Sbjct: 631 ENGELIMGILCKKSLGTSAGSLVHISYLEMGHDVTRLFYSNIQTVINNWLLIEGHTIGIG 690
Query: 627 DF--------SISGAVKR--------ITDRNIGKVSPLL-YQLRFIYNELVAQQLEKHMQ 669
D I +K+ I + ++ P LR + V + L
Sbjct: 691 DSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARD 750
Query: 670 DIELPAIKFASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASH 729
A K S+ + M+ S +K + ++Q I +GQQ V G+ G H
Sbjct: 751 KTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQ-NVEGKRIPFGFKHRTLPH 809
Query: 730 FKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKN 789
F +K DY + G ++ + GL P E H++ RE ++ ++ +E G + +
Sbjct: 810 F-IKDDYGPES-----RGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRR 863
Query: 790 LMAILRDVVVCYDGTVRNVCSNSIIQFEYG 819
L+ + V+V YD TVRN N ++Q YG
Sbjct: 864 LIKSMESVMVKYDATVRNSI-NQVVQLRYG 892
>I1L748_SOYBN (tr|I1L748) DNA-directed RNA polymerase OS=Glycine max PE=3 SV=2
Length = 1772
Score = 174 bits (442), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 195/856 (22%), Positives = 344/856 (40%), Gaps = 103/856 (12%)
Query: 45 NPFLGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKM 104
+P LG +C++C T +C GHFG++EL P++H + + ++ VC NC K+
Sbjct: 54 DPRLGTIDRKLKCDTC-TGSMAECPGHFGHLELAKPMFHIGFLKTVLAIMRCVCFNCSKI 112
Query: 105 KKTKFPSSSSGLAQRLLSP---------CCQEPNAAQ-------------VSIREVKTGD 142
+ LA R+ +P C+ + + +++ + G
Sbjct: 113 LANE-DDHKFKLALRIRNPKNRLRKILDACKNKSKCEGGDDIDIHGKDTGEPVKKSRGGC 171
Query: 143 GACYLVLKVSKSKMQDGFW----RFLDKYGYRYEVDHTRALLPCEVMEMIKRFPLETKKK 198
GA + + K+ + + D+ V+ + L V+ ++KR E +
Sbjct: 172 GAQQPKITIEGMKINAEYKAQRKKSDDQEQLPEPVERKQTLSAERVLSVLKRISDEDCQL 231
Query: 199 LA-GKGYFPQDGYVIKYLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEVIRSSR 257
L Y D +++ LP+PP + + + R +
Sbjct: 232 LGLNPQYARPDWMILQVLPIPPQPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQEK 291
Query: 258 SGEPNF---ESHQVEANDLQSVVDQYLQ--IRGCAKPARDIETHFGVNKELSDASNKAWL 312
+G P E Q+ + + D L R + R I++ + L KA
Sbjct: 292 NGSPAHIISEFVQLLQFHVATYFDNELPGLPRATQRSGRPIKS---ICSRL-----KAKE 343
Query: 313 DKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLVD 372
+++ + K FS+R+VIT D I+++G+P IA +T+ E V +N+ L++LV+
Sbjct: 344 GRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVE 403
Query: 373 ENLCLAYKEGVSTYSLREG-----------SKGHTYLKPGQIVHRRIMDGDIVFINRPPT 421
+ + Y +R+ S H +L+ G V R + DGD V NR P+
Sbjct: 404 YGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDH-HLELGYKVERHLNDGDFVLFNRQPS 462
Query: 422 THKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEK 481
HK S+ + I T ++N + P ADFDGD +++ PQSL +AEV+EL V K
Sbjct: 463 LHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSLETRAEVLELMMVPK 522
Query: 482 QLLSSHXXXXXXXXXXXXXXXXXXXVKK-GFMDRAAANQMAMF---LSLPLPQPALLKAG 537
++S K+ F+ + + M+ +P P +LK
Sbjct: 523 CIVSPQSNKPVMGIVQDTLLGCRKITKRDTFITKDVFMNILMWWEDFDGKVPAPTILKP- 581
Query: 538 SGDCYWTSTQILQCALPLSFD---------------CTGGRYLIR--ESDILGFDLGRDV 580
+ WT Q+ +P + T G ++R + ++L L +
Sbjct: 582 --EPLWTGKQVFNLIIPKQINLIRFSSWHSDDERGPITPGDTMVRIEKGELLTGTLCKKT 639
Query: 581 LPAVINEIAASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHDFSISGAVKRITDR 640
L A + ++ GP A F Q + + N FS+G+ D + ++
Sbjct: 640 LGASAGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSMGIGDTIADASTMEAINQ 699
Query: 641 NIGKVSPLLYQL--------------RFIYNEL---VAQQLEKHMQDIELPAIKFASKSS 683
I + QL R + + V Q L K D A S+S+
Sbjct: 700 TISLAKEKVKQLIRDAQEKKLEAEPGRTMMDSFENRVNQTLNKARDDAGNSAGNSLSESN 759
Query: 684 RLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPS 743
L M+ + SK + ++Q +GQQ V G+ G ++ HF D +
Sbjct: 760 NLKAMVTAGSKGSNINISQMTACVGQQ-NVEGKRIPYGFVDRTLPHFT------KDDHGP 812
Query: 744 AEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDG 803
G ++ + GL P E H++ RE ++ ++ SE G + + L+ + D+++ YDG
Sbjct: 813 ESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMLKYDG 872
Query: 804 TVRNVCSNSIIQFEYG 819
TVRN + +IQF YG
Sbjct: 873 TVRNSLGD-VIQFLYG 887
>G7PTH8_MACFA (tr|G7PTH8) DNA-directed RNA polymerase OS=Macaca fascicularis
GN=EGM_07365 PE=3 SV=1
Length = 1629
Score = 174 bits (442), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 211/877 (24%), Positives = 346/877 (39%), Gaps = 135/877 (15%)
Query: 45 NPFLGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKM 104
+P G+ GRC++C +C GHFG+IEL P++H + + K+L VC C K+
Sbjct: 59 DPRQGVIERTGRCQTCA-GNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKL 117
Query: 105 KKTKFPSSSSGLAQRLLSPCCQEPNAAQVSIREVKTGDGAC---------YLVLK----- 150
S++ + +LS +P + ++ G C + V +
Sbjct: 118 ----LVDSNNPKIKDILSKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDE 173
Query: 151 -VSKSKMQDGFWRF--------LDKYGYRYEVDH----TRALL-PCEVMEMIKRFPLETK 196
++K K G R+ L+ Y V+ + LL P V E+ KR E
Sbjct: 174 DLTKEKGHGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEC 233
Query: 197 KKLAGKGYFPQDGY-VIKYLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEVIRS 255
L + + + + ++ LPVPP + KL V++
Sbjct: 234 FVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDD----LTHKLADIVKINNQ 289
Query: 256 SRSGEPNFESHQVEANDLQ-------SVVDQYLQ--IRGCAKPARDIETHFGVNKELSDA 306
R E N + V A D++ ++VD L R K R +++ + + L
Sbjct: 290 LRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKS---LKQRL--- 343
Query: 307 SNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCY 366
K +++ + K FS+R+VIT D I++VG+P IA +TF E V N+
Sbjct: 344 --KGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDR 401
Query: 367 LQKLV-----------------DENLCLAYKEGVSTYSLREGSKGHTYLKPGQI-----V 404
LQ+LV + + L + S L+ G Y P Q V
Sbjct: 402 LQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTG-----YKAPSQSAWIIGV 456
Query: 405 HRRIMDGDIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYP 464
R + DGDIV NR PT HK S+ V I T ++N + P ADFDGD ++L P
Sbjct: 457 ERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLP 516
Query: 465 QSLAAKAEVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKKG-FMDRAAANQMAMF 523
QSL +AE+ EL V + +++ K+ F++R + MF
Sbjct: 517 QSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMF 576
Query: 524 LSL---PLPQPALLKAGSGDCYWTSTQILQCALPLSFDCT-----------GGRY----- 564
LS +PQPA+LK WT QI +P +C G Y
Sbjct: 577 LSTWDGKVPQPAILKPRP---LWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHISP 633
Query: 565 -----LIRESDILGFDLGRDVLPAVINEIAASVFFGKGPQEALNFFDVLQPFLMECIFSN 619
++ +++ L + L + + G F+ +Q + +
Sbjct: 634 GDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIE 693
Query: 620 GFSVGLHDF--------SISGAVKR--------ITDRNIGKVSPLL-YQLRFIYNELVAQ 662
G ++G+ D I +K+ I + ++ P LR + V +
Sbjct: 694 GHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNR 753
Query: 663 QLEKHMQDIELPAIKFASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGL 722
L A K S+ + M+ S +K + ++Q I +GQQ V G+ G
Sbjct: 754 ILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQ-NVEGKRIPFGF 812
Query: 723 LEDVASHFKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSE 782
HF +K DY + G ++ + GL P E H++ RE ++ ++ +E
Sbjct: 813 KHRTLPHF-IKDDYGPES-----RGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAE 866
Query: 783 PGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 819
G + + L+ + V+V YD TVRN N ++Q YG
Sbjct: 867 TGYIQRRLIKSMESVMVKYDATVRNSI-NQVVQLRYG 902
>G7NIF8_MACMU (tr|G7NIF8) DNA-directed RNA polymerase OS=Macaca mulatta
GN=EGK_08131 PE=3 SV=1
Length = 1629
Score = 174 bits (442), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 211/877 (24%), Positives = 346/877 (39%), Gaps = 135/877 (15%)
Query: 45 NPFLGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKM 104
+P G+ GRC++C +C GHFG+IEL P++H + + K+L VC C K+
Sbjct: 59 DPRQGVIERTGRCQTCA-GNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKL 117
Query: 105 KKTKFPSSSSGLAQRLLSPCCQEPNAAQVSIREVKTGDGAC---------YLVLK----- 150
S++ + +LS +P + ++ G C + V +
Sbjct: 118 ----LVDSNNPKIKDILSKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDE 173
Query: 151 -VSKSKMQDGFWRF--------LDKYGYRYEVDH----TRALL-PCEVMEMIKRFPLETK 196
++K K G R+ L+ Y V+ + LL P V E+ KR E
Sbjct: 174 DLTKEKGHGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEC 233
Query: 197 KKLAGKGYFPQDGY-VIKYLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEVIRS 255
L + + + + ++ LPVPP + KL V++
Sbjct: 234 FVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDD----LTHKLADIVKINNQ 289
Query: 256 SRSGEPNFESHQVEANDLQ-------SVVDQYLQ--IRGCAKPARDIETHFGVNKELSDA 306
R E N + V A D++ ++VD L R K R +++ + + L
Sbjct: 290 LRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKS---LKQRL--- 343
Query: 307 SNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCY 366
K +++ + K FS+R+VIT D I++VG+P IA +TF E V N+
Sbjct: 344 --KGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDR 401
Query: 367 LQKLV-----------------DENLCLAYKEGVSTYSLREGSKGHTYLKPGQI-----V 404
LQ+LV + + L + S L+ G Y P Q V
Sbjct: 402 LQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTG-----YKAPSQSAWIIGV 456
Query: 405 HRRIMDGDIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYP 464
R + DGDIV NR PT HK S+ V I T ++N + P ADFDGD ++L P
Sbjct: 457 ERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLP 516
Query: 465 QSLAAKAEVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKKG-FMDRAAANQMAMF 523
QSL +AE+ EL V + +++ K+ F++R + MF
Sbjct: 517 QSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMF 576
Query: 524 LSL---PLPQPALLKAGSGDCYWTSTQILQCALPLSFDCT-----------GGRY----- 564
LS +PQPA+LK WT QI +P +C G Y
Sbjct: 577 LSTWDGKVPQPAILKPRP---LWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHISP 633
Query: 565 -----LIRESDILGFDLGRDVLPAVINEIAASVFFGKGPQEALNFFDVLQPFLMECIFSN 619
++ +++ L + L + + G F+ +Q + +
Sbjct: 634 GDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIE 693
Query: 620 GFSVGLHDF--------SISGAVKR--------ITDRNIGKVSPLL-YQLRFIYNELVAQ 662
G ++G+ D I +K+ I + ++ P LR + V +
Sbjct: 694 GHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNR 753
Query: 663 QLEKHMQDIELPAIKFASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGL 722
L A K S+ + M+ S +K + ++Q I +GQQ V G+ G
Sbjct: 754 ILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQ-NVEGKRIPFGF 812
Query: 723 LEDVASHFKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSE 782
HF +K DY + G ++ + GL P E H++ RE ++ ++ +E
Sbjct: 813 KHRTLPHF-IKDDYGPES-----RGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAE 866
Query: 783 PGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYG 819
G + + L+ + V+V YD TVRN N ++Q YG
Sbjct: 867 TGYIQRRLIKSMESVMVKYDATVRNSI-NQVVQLRYG 902
>O35559_CRIGR (tr|O35559) DNA-directed RNA polymerase OS=Cricetulus griseus PE=2
SV=1
Length = 1970
Score = 174 bits (442), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 210/870 (24%), Positives = 344/870 (39%), Gaps = 131/870 (15%)
Query: 45 NPFLGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKM 104
+P G+ GRC++C +C GHFG+IEL P++H + + K+L VC C K+
Sbjct: 59 DPRQGVIERTGRCQTCA-GNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKL 117
Query: 105 KKTKFPSSSSGLAQRLLSPCCQEPNAAQVSIREVKTGDGAC---------YLVLK----- 150
S++ + +L+ +P + ++ G C + V +
Sbjct: 118 ----LVDSNNPKIKDILAKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDE 173
Query: 151 -VSKSKMQDGFWRF--------LDKYGYRYEVDHTRA-----LLPCEVMEMIKRFPLETK 196
++K K G R+ L+ Y V+ L P V E+ KR E
Sbjct: 174 DLTKEKGHGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEC 233
Query: 197 KKLAGKGYFPQDGY-VIKYLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEVIRS 255
L + + + + ++ LPVPP + KL V++
Sbjct: 234 FVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDD----LTHKLADIVKINNQ 289
Query: 256 SRSGEPNFESHQVEANDLQ-------SVVDQYLQ--IRGCAKPARDIETHFGVNKELSDA 306
R E N + V A D++ ++VD L R K R +++ + + L
Sbjct: 290 LRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKS---LKQRL--- 343
Query: 307 SNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCY 366
K +++ + K FS+R+VIT D I++VG+P IA +TF E V N+
Sbjct: 344 --KGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDR 401
Query: 367 LQKLVDENLCLAYKEGVSTYS--------------LREGSK-GHTYLKPGQIVHRRIMDG 411
LQ+LV + G S Y LR K +L+ G V R + DG
Sbjct: 402 LQELV--------RRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDG 453
Query: 412 DIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKA 471
DIV NR PT HK S+ V I T ++N + P ADFDGD ++L PQSL +A
Sbjct: 454 DIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRA 513
Query: 472 EVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKKG-FMDRAAANQMAMFLSL---P 527
E+ EL V + +++ K+ F++R + MFLS
Sbjct: 514 EIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGK 573
Query: 528 LPQPALLKAGSGDCYWTSTQILQCALPLSFDCT-----------GGRY----------LI 566
+PQPA+LK WT QI +P +C G Y ++
Sbjct: 574 VPQPAILKPRP---LWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVV 630
Query: 567 RESDILGFDLGRDVLPAVINEIAASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLH 626
+++ L + L + + G F+ +Q + + G ++G+
Sbjct: 631 ENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIG 690
Query: 627 DF--------SISGAVKR--------ITDRNIGKVSPLL-YQLRFIYNELVAQQLEKHMQ 669
D I +K+ I + ++ P LR + V + L
Sbjct: 691 DSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARD 750
Query: 670 DIELPAIKFASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASH 729
A K S+ + M+ S +K + ++Q I +GQQ V G+ G H
Sbjct: 751 KTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQ-NVEGKRIPFGFKHRTLPH 809
Query: 730 FKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKN 789
F +K DY + G ++ + GL P E H++ RE ++ ++ +E G + +
Sbjct: 810 F-IKDDYGPES-----RGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRR 863
Query: 790 LMAILRDVVVCYDGTVRNVCSNSIIQFEYG 819
L+ + V+V YD TVRN N ++Q YG
Sbjct: 864 LIKSMESVMVKYDATVRNSI-NQVVQLRYG 892
>D4A5A6_RAT (tr|D4A5A6) DNA-directed RNA polymerase OS=Rattus norvegicus
GN=Polr2a PE=2 SV=1
Length = 1970
Score = 174 bits (442), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 210/870 (24%), Positives = 344/870 (39%), Gaps = 131/870 (15%)
Query: 45 NPFLGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKM 104
+P G+ GRC++C +C GHFG+IEL P++H + + K+L VC C K+
Sbjct: 59 DPRQGVIERTGRCQTCA-GNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKL 117
Query: 105 KKTKFPSSSSGLAQRLLSPCCQEPNAAQVSIREVKTGDGAC---------YLVLK----- 150
S++ + +L+ +P + ++ G C + V +
Sbjct: 118 ----LVDSNNPKIKDILAKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDE 173
Query: 151 -VSKSKMQDGFWRF--------LDKYGYRYEVDHTRA-----LLPCEVMEMIKRFPLETK 196
++K K G R+ L+ Y V+ L P V E+ KR E
Sbjct: 174 DLTKEKGHGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEC 233
Query: 197 KKLAGKGYFPQDGY-VIKYLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEVIRS 255
L + + + + ++ LPVPP + KL V++
Sbjct: 234 FVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDD----LTHKLADIVKINNQ 289
Query: 256 SRSGEPNFESHQVEANDLQ-------SVVDQYLQ--IRGCAKPARDIETHFGVNKELSDA 306
R E N + V A D++ ++VD L R K R +++ + + L
Sbjct: 290 LRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKS---LKQRL--- 343
Query: 307 SNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCY 366
K +++ + K FS+R+VIT D I++VG+P IA +TF E V N+
Sbjct: 344 --KGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDR 401
Query: 367 LQKLVDENLCLAYKEGVSTYS--------------LREGSK-GHTYLKPGQIVHRRIMDG 411
LQ+LV + G S Y LR K +L+ G V R + DG
Sbjct: 402 LQELV--------RRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDG 453
Query: 412 DIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKA 471
DIV NR PT HK S+ V I T ++N + P ADFDGD ++L PQSL +A
Sbjct: 454 DIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRA 513
Query: 472 EVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKKG-FMDRAAANQMAMFLSL---P 527
E+ EL V + +++ K+ F++R + MFLS
Sbjct: 514 EIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGK 573
Query: 528 LPQPALLKAGSGDCYWTSTQILQCALPLSFDCT-----------GGRY----------LI 566
+PQPA+LK WT QI +P +C G Y ++
Sbjct: 574 VPQPAILKPRP---LWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVV 630
Query: 567 RESDILGFDLGRDVLPAVINEIAASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLH 626
+++ L + L + + G F+ +Q + + G ++G+
Sbjct: 631 ENGELIMGILCKKSLGTSAGSLVHISYLEMGHDVTRLFYSNIQTVINNWLLIEGHTIGIG 690
Query: 627 DF--------SISGAVKR--------ITDRNIGKVSPLL-YQLRFIYNELVAQQLEKHMQ 669
D I +K+ I + ++ P LR + V + L
Sbjct: 691 DSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARD 750
Query: 670 DIELPAIKFASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASH 729
A K S+ + M+ S +K + ++Q I +GQQ V G+ G H
Sbjct: 751 KTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQ-NVEGKRIPFGFKHRTLPH 809
Query: 730 FKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKN 789
F +K DY + G ++ + GL P E H++ RE ++ ++ +E G + +
Sbjct: 810 F-IKDDYGPES-----RGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRR 863
Query: 790 LMAILRDVVVCYDGTVRNVCSNSIIQFEYG 819
L+ + V+V YD TVRN N ++Q YG
Sbjct: 864 LIKSMESVMVKYDATVRNSI-NQVVQLRYG 892
>E3L0Q1_PUCGT (tr|E3L0Q1) DNA-directed RNA polymerase OS=Puccinia graminis f. sp.
tritici (strain CRL 75-36-700-3 / race SCCL)
GN=PGTG_15953 PE=3 SV=2
Length = 1703
Score = 174 bits (442), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 143/554 (25%), Positives = 246/554 (44%), Gaps = 52/554 (9%)
Query: 314 KMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLVDE 373
+++ + K FS+R+VITGD ++++VG+P+ IA+ +T+ ERV +N+ YLQ+LV +
Sbjct: 354 RLRGNLMGKRVDFSARTVITGDPNLQLDQVGVPYSIARNLTYPERVTPYNISYLQELV-Q 412
Query: 374 NLCLAY-------KEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHS 426
N Y ++ LR + T+L+ G IV R + DGD V NR P+ HK S
Sbjct: 413 NGPTEYPGARYVVRDTGDRIDLRYNKRADTFLQYGWIVERHLKDGDYVLFNRQPSLHKMS 472
Query: 427 LQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSS 486
+ + + + T ++N + P ADFDGD ++L PQS +AE+ ++ V + ++S
Sbjct: 473 MMSHRIKLMPYSTFRLNLSVTPPYNADFDGDEMNLHVPQSEETRAELAQIAWVPRNIVSP 532
Query: 487 HXXXXXXXXXXXXX-XXXXXXVKKGFMDRAAANQMAMFLS---LPLPQPALLKAGSGDCY 542
++ FMDR + +++ +P PA+LK
Sbjct: 533 QANKPVMGIVQDTLCGVRKFTLRDCFMDRDFVQNILLWVPGWDGVVPPPAILKPKP---L 589
Query: 543 WTSTQILQCALP------------LSFDCTGGRYLIRESDILGFDLGRDVLPAVINEIAA 590
WT QIL +P S I + +I+ + + + A +
Sbjct: 590 WTGKQILSMCIPKGINLLRDDENQTSIPIADKGLWIEDGEIVYGVVDKKCVGASQGGLIH 649
Query: 591 SVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHDFSISGA-VKRITD------RNIG 643
+F KGPQ F +Q + + +GFS+G+ D A ++ IT+ R +
Sbjct: 650 VIFREKGPQVTRGLFSGIQMVVNYWLLHHGFSIGIGDTVPDKATMEAITNFISEAKREVS 709
Query: 644 KVSPLLYQ----------LRFIYNELVAQQLEKHMQDIELPAIKFASKSSRLGDMIDSKS 693
+ L + +R + V + L + A + + + M+ + S
Sbjct: 710 ETISLAQEDKLQPEPGMTIRESFEAKVNRALNTARDNAGRSAEQSLKDDNNVKQMVTAGS 769
Query: 694 KSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLKGCF 753
K + ++Q +GQQ V G+ G HF D Y G ++ +
Sbjct: 770 KGSFINISQMSACVGQQ-SVEGKRIPYGFKYRTLPHFT------KDDYSPESRGFVENSY 822
Query: 754 FHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSI 813
GL P E H+++ RE ++ ++ +E G + + L+ L DV+V YDGTVRN + I
Sbjct: 823 LRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLLKALEDVMVTYDGTVRNSLGD-I 881
Query: 814 IQFEYGLKAGDNAS 827
+QF YG D +
Sbjct: 882 VQFVYGEDGVDGGT 895
>I3LYD0_SPETR (tr|I3LYD0) DNA-directed RNA polymerase OS=Spermophilus
tridecemlineatus GN=POLR2A PE=3 SV=1
Length = 1970
Score = 174 bits (442), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 210/870 (24%), Positives = 344/870 (39%), Gaps = 131/870 (15%)
Query: 45 NPFLGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKM 104
+P G+ GRC++C +C GHFG+IEL P++H + + K+L VC C K+
Sbjct: 59 DPRQGVIERTGRCQTCA-GNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKL 117
Query: 105 KKTKFPSSSSGLAQRLLSPCCQEPNAAQVSIREVKTGDGAC---------YLVLK----- 150
S++ + +L+ +P + ++ G C + V +
Sbjct: 118 ----LVDSNNPKIKDILAKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDE 173
Query: 151 -VSKSKMQDGFWRF--------LDKYGYRYEVDHTRA-----LLPCEVMEMIKRFPLETK 196
++K K G R+ L+ Y V+ L P V E+ KR E
Sbjct: 174 DLTKEKGHGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEC 233
Query: 197 KKLAGKGYFPQDGY-VIKYLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEVIRS 255
L + + + + ++ LPVPP + KL V++
Sbjct: 234 FVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDD----LTHKLADIVKINNQ 289
Query: 256 SRSGEPNFESHQVEANDLQ-------SVVDQYLQ--IRGCAKPARDIETHFGVNKELSDA 306
R E N + V A D++ ++VD L R K R +++ + + L
Sbjct: 290 LRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKS---LKQRL--- 343
Query: 307 SNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCY 366
K +++ + K FS+R+VIT D I++VG+P IA +TF E V N+
Sbjct: 344 --KGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDR 401
Query: 367 LQKLVDENLCLAYKEGVSTYS--------------LREGSK-GHTYLKPGQIVHRRIMDG 411
LQ+LV + G S Y LR K +L+ G V R + DG
Sbjct: 402 LQELV--------RRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDG 453
Query: 412 DIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKA 471
DIV NR PT HK S+ V I T ++N + P ADFDGD ++L PQSL +A
Sbjct: 454 DIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRA 513
Query: 472 EVVELFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKKG-FMDRAAANQMAMFLSL---P 527
E+ EL V + +++ K+ F++R + MFLS
Sbjct: 514 EIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGK 573
Query: 528 LPQPALLKAGSGDCYWTSTQILQCALPLSFDCT-----------GGRY----------LI 566
+PQPA+LK WT QI +P +C G Y ++
Sbjct: 574 VPQPAILKPRP---LWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVV 630
Query: 567 RESDILGFDLGRDVLPAVINEIAASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLH 626
+++ L + L + + G F+ +Q + + G ++G+
Sbjct: 631 ENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIG 690
Query: 627 DF--------SISGAVKR--------ITDRNIGKVSPLL-YQLRFIYNELVAQQLEKHMQ 669
D I +K+ I + ++ P LR + V + L
Sbjct: 691 DSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARD 750
Query: 670 DIELPAIKFASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASH 729
A K S+ + M+ S +K + ++Q I +GQQ V G+ G H
Sbjct: 751 KTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQ-NVEGKRIPFGFKHRTLPH 809
Query: 730 FKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKN 789
F +K DY + G ++ + GL P E H++ RE ++ ++ +E G + +
Sbjct: 810 F-IKDDYGPES-----RGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRR 863
Query: 790 LMAILRDVVVCYDGTVRNVCSNSIIQFEYG 819
L+ + V+V YD TVRN N ++Q YG
Sbjct: 864 LIKSMESVMVKYDATVRNSI-NQVVQLRYG 892