Miyakogusa Predicted Gene

Lj0g3v0060339.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0060339.1 Non Chatacterized Hit- tr|C0JP14|C0JP14_LOTJA
Putative basic helix-loop-helix protein BHLH9
OS=Lotus,97.92,2e-18,seg,NULL,CUFF.2674.1
         (94 letters)

Database: trembl 
           41,451,118 sequences; 13,208,986,710 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

C0JP14_LOTJA (tr|C0JP14) Putative basic helix-loop-helix protein...    80   2e-13

>C0JP14_LOTJA (tr|C0JP14) Putative basic helix-loop-helix protein BHLH9
          OS=Lotus japonicus PE=4 SV=1
          Length = 165

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/40 (97%), Positives = 39/40 (97%)

Query: 45 LHSTAGAFLSAPPHPLPAANVSSSSLGISENEADEYDCES 84
          LHSTAGAFLSAPPHPL AANVSSSSLGISENEADEYDCES
Sbjct: 9  LHSTAGAFLSAPPHPLLAANVSSSSLGISENEADEYDCES 48