Miyakogusa Predicted Gene

Lj6g3v2274990.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v2274990.1 Non Chatacterized Hit- tr|B6SZH9|B6SZH9_MAIZE
Putative uncharacterized protein OS=Zea mays PE=2
SV=1,32.29,1e-18,coiled-coil,NULL; seg,NULL,CUFF.61009.1
         (276 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma12g28890.1                                                       152   5e-37

>Glyma12g28890.1 
          Length = 211

 Score =  152 bits (383), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 119/271 (43%), Positives = 143/271 (52%), Gaps = 66/271 (24%)

Query: 12  LDHTSTVDTSRPFTSVKEAVAIFGERLLVGEIYSPKPFSDTPYSPIIKREPSWRFSSPSP 71
           +D +STVDTSRPFTSVKEAVAIFGERLL+GEI          YSPI +       S    
Sbjct: 1   MDFSSTVDTSRPFTSVKEAVAIFGERLLLGEI----------YSPIKRESSWRLSSPSPS 50

Query: 72  NYPIKPKEENNVNALSDTAFSPPVKREPSWRFSSPSPIKPKEENNENALFDTXXXXXXXX 131
                 K +   N  ++   +  +K+  +    +   +K                     
Sbjct: 51  PSSRPMKTDEENNNNNNGQLADIIKKLEAELEQTKVELK--------------------- 89

Query: 132 XXXXXXXXMLKERGSETEVALATLNAELHKNMSKLXXXXXXXXXXXXXXXTKTVRFEI-- 189
                   +LKERGSETEVALATLNAELHKNMSKL               TKTVRFEI  
Sbjct: 90  --------LLKERGSETEVALATLNAELHKNMSKLAQAEATAAGKAAT--TKTVRFEISE 139

Query: 190 ERENGEKELNMIXXXXXXXXXXXXXXXXXXXTETLAKILSLGENDHLFGGKKVRKQK--- 246
           +R++G  E                       +++L+ +LSLGE DHLFGGKK +KQK   
Sbjct: 140 DRKDGTVE-------------------KKKESQSLSHMLSLGEKDHLFGGKKGKKQKQKQ 180

Query: 247 -PIIPLVGDFFFKRKSSSTTNHHNPLYASPF 276
            PIIPLVGD FFKRKSSSTT+HHNPLYASPF
Sbjct: 181 KPIIPLVGDLFFKRKSSSTTSHHNPLYASPF 211