Miyakogusa Predicted Gene
- Lj6g3v2257810.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v2257810.1 tr|B9GZQ9|B9GZQ9_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_712240 PE=4
SV=1,56.84,2e-18,SUBFAMILY NOT NAMED,NULL; PYM PROTEIN,NULL;
Mago-bind,Exon junction complex, Pym; Pym (Within the bg,CUFF.60934.1
(217 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma08g13520.1 210 1e-54
Glyma08g13520.2 206 2e-53
Glyma05g30400.1 186 2e-47
Glyma14g34370.1 140 1e-33
Glyma14g26940.1 54 2e-07
Glyma14g26940.3 50 2e-06
>Glyma08g13520.1
Length = 196
Score = 210 bits (534), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 119/206 (57%), Positives = 145/206 (70%), Gaps = 31/206 (15%)
Query: 13 QLSKTLKQGERILAPTRRPDGTLRKPIRIRAGYVPQEEVAIYHPKPALEFKKEMASHSGP 72
+LSK+LK+GER++ PTRRPDGTLRKPIRIRAGY PQ+EVAIY PK AL KKEM S +GP
Sbjct: 12 ELSKSLKEGERLVGPTRRPDGTLRKPIRIRAGYTPQDEVAIYQPKGAL-LKKEMGS-AGP 69
Query: 73 PGYDPELEPKPRTKAGKRNERKKEKRLQAALDKDSNVA--QDSGEQETLATVENSSHSSE 130
PGY+P+ + KP+TK+ KRNERKKEKR+QAAL+K+ NV+ +DSG+QE+L
Sbjct: 70 PGYEPDADSKPKTKSVKRNERKKEKRIQAALEKEKNVSEVEDSGKQESL----------- 118
Query: 131 PVHSLTTQMNELAVSGDSSIVTPAANSVDGSESGQDIEXXXXXXXXXXXXTEALQQKSAE 190
+LT+Q+N LAV S QDI+ TEAL+QKSAE
Sbjct: 119 --EALTSQVNRLAVQ--------------DSPQAQDIDKRIRALKKKIRLTEALEQKSAE 162
Query: 191 QDLKPEQLEKLAKLDDWRKELKQLED 216
QDLKPEQLEKLAKL+DWR+ELK LED
Sbjct: 163 QDLKPEQLEKLAKLEDWRRELKLLED 188
>Glyma08g13520.2
Length = 193
Score = 206 bits (523), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 115/206 (55%), Positives = 141/206 (68%), Gaps = 34/206 (16%)
Query: 13 QLSKTLKQGERILAPTRRPDGTLRKPIRIRAGYVPQEEVAIYHPKPALEFKKEMASHSGP 72
+LSK+LK+GER++ PTRRPDGTLRKPIRIRAGY PQ+EVAIY PK ALE +GP
Sbjct: 12 ELSKSLKEGERLVGPTRRPDGTLRKPIRIRAGYTPQDEVAIYQPKGALEM-----GSAGP 66
Query: 73 PGYDPELEPKPRTKAGKRNERKKEKRLQAALDKDSNVA--QDSGEQETLATVENSSHSSE 130
PGY+P+ + KP+TK+ KRNERKKEKR+QAAL+K+ NV+ +DSG+QE+L
Sbjct: 67 PGYEPDADSKPKTKSVKRNERKKEKRIQAALEKEKNVSEVEDSGKQESL----------- 115
Query: 131 PVHSLTTQMNELAVSGDSSIVTPAANSVDGSESGQDIEXXXXXXXXXXXXTEALQQKSAE 190
+LT+Q+N LAV S QDI+ TEAL+QKSAE
Sbjct: 116 --EALTSQVNRLAVQ--------------DSPQAQDIDKRIRALKKKIRLTEALEQKSAE 159
Query: 191 QDLKPEQLEKLAKLDDWRKELKQLED 216
QDLKPEQLEKLAKL+DWR+ELK LED
Sbjct: 160 QDLKPEQLEKLAKLEDWRRELKLLED 185
>Glyma05g30400.1
Length = 197
Score = 186 bits (472), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 117/210 (55%), Positives = 142/210 (67%), Gaps = 38/210 (18%)
Query: 13 QLSKTLKQGERILAPTRRPDGTLRKPIRIRAGYVPQEEVAIYHPKPALEFKKEMASHSGP 72
+LSK+LK+GERI+ PTRRPDGTLRKPIRIRAGY PQ+EVAIY PK KKEM S +GP
Sbjct: 12 ELSKSLKEGERIVGPTRRPDGTLRKPIRIRAGYTPQDEVAIYQPKG---LKKEMGS-AGP 67
Query: 73 PGYDPELEP----KPRTKAGKRNERKKEKRLQAALDKDSNVA--QDSGEQETLATVENSS 126
PGYDP+ + KP+TK+ KRNERKKEKR+QAAL+K+ NV+ ++SG+QE
Sbjct: 68 PGYDPDADSKPKPKPKTKSVKRNERKKEKRIQAALEKEKNVSEVEESGKQEF-------- 119
Query: 127 HSSEPVHSLTTQMNELAVSGDSSIVTPAANSVDGSESGQDIEXXXXXXXXXXXXTEALQQ 186
V +LT+Q+NELAV DS QDI+ TEAL+Q
Sbjct: 120 -----VEALTSQVNELAVQ-DS--------------QAQDIDKRIRALRKKIRLTEALEQ 159
Query: 187 KSAEQDLKPEQLEKLAKLDDWRKELKQLED 216
KS EQ+LKPEQLEKLAKL+DW +ELK LED
Sbjct: 160 KSTEQNLKPEQLEKLAKLEDWHRELKLLED 189
>Glyma14g34370.1
Length = 140
Score = 140 bits (353), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 79/147 (53%), Positives = 102/147 (69%), Gaps = 22/147 (14%)
Query: 15 SKTLKQGERILAPTRRPDGTLRKPIRIRAGYVPQEEVAIYHPKPALEFKKEMASHSGPPG 74
SK+LK+GER++ P RRPD TL KPIRIRAGY PQ+EV IY PK AL KKEM S GPPG
Sbjct: 5 SKSLKEGERLVGPMRRPDETLCKPIRIRAGYTPQDEVTIYQPKGAL-LKKEMGS-VGPPG 62
Query: 75 YDPELEPKPRTKAGKRNERKKEKRLQAALDKDSNVA--QDSGEQETLATVENSSHSSEPV 132
Y+P+ + KP+TK+ KRNERKKEKR+QAAL+K+ NV+ +DSG+QE+L
Sbjct: 63 YEPDADSKPKTKSVKRNERKKEKRIQAALEKEKNVSEVEDSGKQESL------------- 109
Query: 133 HSLTTQMNELAVSGDSSIVTPAANSVD 159
+LT+Q+N L + +P A +D
Sbjct: 110 EALTSQVNRLTLQD-----SPQAQDID 131
>Glyma14g26940.1
Length = 407
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 48/71 (67%), Gaps = 15/71 (21%)
Query: 76 DPELEPKPRTKAGKRNERKKEKRLQAALDKDSNVA--QDSGEQETLATVENSSHSSEPVH 133
+P+ + KP+TK+ KRNE KKEK +QAAL+K+ NV+ +DSG+QE+L
Sbjct: 139 EPDADSKPKTKSVKRNEIKKEKCIQAALEKEKNVSEVEDSGKQESL-------------E 185
Query: 134 SLTTQMNELAV 144
+LT+Q+N LA+
Sbjct: 186 ALTSQVNRLAL 196
>Glyma14g26940.3
Length = 142
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 49/80 (61%), Gaps = 20/80 (25%)
Query: 82 KPRTKAGKRNERKKEKRLQAALDKDSNVA--QDSGEQETLATVENSSHSSEPVHSLTTQM 139
KP+TK+ KRNE KKEK +QAAL+K+ NV+ +DSG+QE+L +LT+Q+
Sbjct: 50 KPKTKSVKRNEIKKEKCIQAALEKEKNVSEVEDSGKQESL-------------EALTSQV 96
Query: 140 NELAVSGDSSIVTPAANSVD 159
N LA+ +P A +D
Sbjct: 97 NRLALQD-----SPQAQDID 111