Miyakogusa Predicted Gene

Lj6g3v2217030.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v2217030.1 tr|B9H725|B9H725_POPTR Methyl binding domain
protein OS=Populus trichocarpa GN=MBD909 PE=4
SV=1,40.37,2e-17,seg,NULL; ZINC_FINGER_C2H2_1,Zinc finger, C2H2;
ZINC_FINGER_C2H2_2,Zinc finger, C2H2,CUFF.60833.1
         (312 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma08g19030.2                                                       173   2e-43
Glyma08g19030.1                                                       173   2e-43
Glyma15g05970.1                                                       172   3e-43

>Glyma08g19030.2 
          Length = 365

 Score =  173 bits (439), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 113/232 (48%), Positives = 136/232 (58%), Gaps = 19/232 (8%)

Query: 99  MDALIEIAQNSIMEDSVMEPHNSAKMNVIPDSEIAVGDFDQDMDFEYPTD---VVDDLNL 155
           MDALIEIAQNSIMEDSV EPH+SAK+N IP S+IAVG  DQD + E P     + D +  
Sbjct: 1   MDALIEIAQNSIMEDSVTEPHSSAKLNRIPASDIAVGYIDQDRNSESPISEQKMEDSMTG 60

Query: 156 QCSTHLLMNGKGDEIDDYNQVIDAEGVTLLDSMDLSYVNEQNVHVSGTSKGKEDVALTAA 215
               H L     +EIDD N VI+ + VT LD++ L  VN+Q+V+V  TSK K+DV LT  
Sbjct: 61  NNVDHDLDEELVEEIDDDNHVINVKMVTFLDNVGLLSVNKQDVNVPETSKVKDDVPLTIE 120

Query: 216 GFGQSGIDLEVVSQSPLFPL--------------SGCTNSKGQFKLDEDNSKNSELKFSL 261
              QSG+DL+  S + L PL              SGC N+KG F LDED S  +EL+F L
Sbjct: 121 ELDQSGMDLDEDSHNCLLPLSEHHIIPESEKSENSGCANTKGLFILDEDISNKTELEFGL 180

Query: 262 DGCKDVP--VRADFQXXXXXXXXXXXXXXXXXNRSISTEQPLDCFPAFSSDK 311
           +G KDVP  V  + Q                 N SISTEQ LDC PAFSSDK
Sbjct: 181 NGLKDVPVTVSTNVQEMVRPASQENVAHSRVFNSSISTEQSLDCLPAFSSDK 232


>Glyma08g19030.1 
          Length = 365

 Score =  173 bits (439), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 113/232 (48%), Positives = 136/232 (58%), Gaps = 19/232 (8%)

Query: 99  MDALIEIAQNSIMEDSVMEPHNSAKMNVIPDSEIAVGDFDQDMDFEYPTD---VVDDLNL 155
           MDALIEIAQNSIMEDSV EPH+SAK+N IP S+IAVG  DQD + E P     + D +  
Sbjct: 1   MDALIEIAQNSIMEDSVTEPHSSAKLNRIPASDIAVGYIDQDRNSESPISEQKMEDSMTG 60

Query: 156 QCSTHLLMNGKGDEIDDYNQVIDAEGVTLLDSMDLSYVNEQNVHVSGTSKGKEDVALTAA 215
               H L     +EIDD N VI+ + VT LD++ L  VN+Q+V+V  TSK K+DV LT  
Sbjct: 61  NNVDHDLDEELVEEIDDDNHVINVKMVTFLDNVGLLSVNKQDVNVPETSKVKDDVPLTIE 120

Query: 216 GFGQSGIDLEVVSQSPLFPL--------------SGCTNSKGQFKLDEDNSKNSELKFSL 261
              QSG+DL+  S + L PL              SGC N+KG F LDED S  +EL+F L
Sbjct: 121 ELDQSGMDLDEDSHNCLLPLSEHHIIPESEKSENSGCANTKGLFILDEDISNKTELEFGL 180

Query: 262 DGCKDVP--VRADFQXXXXXXXXXXXXXXXXXNRSISTEQPLDCFPAFSSDK 311
           +G KDVP  V  + Q                 N SISTEQ LDC PAFSSDK
Sbjct: 181 NGLKDVPVTVSTNVQEMVRPASQENVAHSRVFNSSISTEQSLDCLPAFSSDK 232


>Glyma15g05970.1 
          Length = 443

 Score =  172 bits (437), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 81/94 (86%), Positives = 85/94 (90%), Gaps = 1/94 (1%)

Query: 1   MTFGEKDSYLQHLLSVHQRTTRRYRLGSTVGDGVIIKDGKFECQFCHKVFLERRRYNGHV 60
           M+F EKD YLQHLLS HQRTTRRYRLGS+VGDGVIIKDGKFECQFCHKVFLERRRYNGHV
Sbjct: 346 MSFNEKDLYLQHLLSFHQRTTRRYRLGSSVGDGVIIKDGKFECQFCHKVFLERRRYNGHV 405

Query: 61  GIHVRNYVRRVEDSPGQTNVQRA-DKSPVLEEVP 93
           GIHVRNYVR+VEDSPGQ NVQ   DKSPV E+ P
Sbjct: 406 GIHVRNYVRKVEDSPGQPNVQGTDDKSPVREDFP 439