Miyakogusa Predicted Gene

Lj6g3v2204780.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v2204780.1 tr|G7IPK2|G7IPK2_MEDTR Splicing factor 3B subunit
OS=Medicago truncatula GN=MTR_2g009110 PE=4 SV=1,92.95,0,no
description,Armadillo-like helical; ARM repeat,Armadillo-type fold;
SPLICING FACTOR 3B, SUBUNIT 1,CUFF.60807.1
         (1187 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g30200.1                                                      1352   0.0  
Glyma15g08940.1                                                       439   e-123
Glyma02g03600.1                                                        65   3e-10

>Glyma13g30200.1 
          Length = 684

 Score = 1352 bits (3500), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 664/697 (95%), Positives = 670/697 (96%), Gaps = 13/697 (1%)

Query: 491  MIAAMRPDIDNIDEYVRNTTARAFSVVASALGIPALLPFLKAVCQSKKSWQARHTGIKIV 550
            MIAAMRPDIDNIDEYVRNTTARAFSVVASALGIPALLPFLKAVCQSKKSWQARHTGIKIV
Sbjct: 1    MIAAMRPDIDNIDEYVRNTTARAFSVVASALGIPALLPFLKAVCQSKKSWQARHTGIKIV 60

Query: 551  QQIAILIGCAVLPHLRSLVEIIEHGLNDENQKVRTITXXXXXXXXXXXXPYGIESFDSVL 610
            QQIAILIGCAVLPHLRSLVEIIEHGLNDENQKVRTI+            PYGIESFDSVL
Sbjct: 61   QQIAILIGCAVLPHLRSLVEIIEHGLNDENQKVRTISALSLAALAEAAAPYGIESFDSVL 120

Query: 611  KPLWKGIRQHRGKVLAAFLKAIGFIIPLMEALYASYYTKEVMLILIREFQSPDEEMKKIV 670
            KPLWKGIRQHRGKVLAAFLKAIGFIIPLMEALYASYYTKEVMLILIREFQSPDEEMKKIV
Sbjct: 121  KPLWKGIRQHRGKVLAAFLKAIGFIIPLMEALYASYYTKEVMLILIREFQSPDEEMKKIV 180

Query: 671  LKVVKQCVSTEGVEADYIRTDILPEFFRNFWVRRMALDRRNYKQLVETTVEIANKVGVAD 730
            LKVVKQCVSTEGVEA+YIR DILPEFF+NFWVRRMALDRRNYKQLVETTVEIANKVGVAD
Sbjct: 181  LKVVKQCVSTEGVEAEYIRNDILPEFFKNFWVRRMALDRRNYKQLVETTVEIANKVGVAD 240

Query: 731  IVGRIVEDLKDESEPYRRMVMETIEKVVTNLGSSDIDARLEELLIDGILYAFQEQTSDDA 790
            IVGRIVEDLKDESEPYRRMVMETIEKVVTNLG+SDIDARLEELLIDGILYAFQEQTSDDA
Sbjct: 241  IVGRIVEDLKDESEPYRRMVMETIEKVVTNLGASDIDARLEELLIDGILYAFQEQTSDDA 300

Query: 791  NVMLNGFGAVVNSLGQRVKPYLPQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHE 850
            NVMLNGFGAVVNSLGQR             WRLNNKSAKVRQQAADLISRIAVVMKQCHE
Sbjct: 301  NVMLNGFGAVVNSLGQR-------------WRLNNKSAKVRQQAADLISRIAVVMKQCHE 347

Query: 851  EQLMGHLGVVLYEYLGEEYPEVLGSILGALKSIVNVIGMTKMTPPIKDLLPRLTPILKNR 910
            EQLMGHLGVVLYEYLGEEYPEVLGSILGALKSIVNVIGMTKMTPPIKDLLPRLTPILKNR
Sbjct: 348  EQLMGHLGVVLYEYLGEEYPEVLGSILGALKSIVNVIGMTKMTPPIKDLLPRLTPILKNR 407

Query: 911  HEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIAKA 970
            HEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIAKA
Sbjct: 408  HEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIAKA 467

Query: 971  IGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGV 1030
            IGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGV
Sbjct: 468  IGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGV 527

Query: 1031 LKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTAASAVKHMALGVAGLGCEDA 1090
            LKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTAASAVKHMALGVAGLGCEDA
Sbjct: 528  LKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTAASAVKHMALGVAGLGCEDA 587

Query: 1091 LVHLLNYVWPNIFETSPHVINAVMEAIEGMRVALGAAVVLNYCLQGLFHPARKVREVYWK 1150
            LVHLLNYVWPNIFETSPHVINAVMEAIEGMRVALGAAVVLNYCLQGLFHPARKVREVYWK
Sbjct: 588  LVHLLNYVWPNIFETSPHVINAVMEAIEGMRVALGAAVVLNYCLQGLFHPARKVREVYWK 647

Query: 1151 IYNSLYIGAQDALVAAYPALEDEHSNVYSRPELMMFI 1187
            IYNSLYIGAQDALVA+YPALEDE +NVYSRPELMMFI
Sbjct: 648  IYNSLYIGAQDALVASYPALEDEQNNVYSRPELMMFI 684


>Glyma15g08940.1 
          Length = 214

 Score =  439 bits (1129), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 213/213 (100%), Positives = 213/213 (100%)

Query: 793  MLNGFGAVVNSLGQRVKPYLPQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEEQ 852
            MLNGFGAVVNSLGQRVKPYLPQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEEQ
Sbjct: 1    MLNGFGAVVNSLGQRVKPYLPQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEEQ 60

Query: 853  LMGHLGVVLYEYLGEEYPEVLGSILGALKSIVNVIGMTKMTPPIKDLLPRLTPILKNRHE 912
            LMGHLGVVLYEYLGEEYPEVLGSILGALKSIVNVIGMTKMTPPIKDLLPRLTPILKNRHE
Sbjct: 61   LMGHLGVVLYEYLGEEYPEVLGSILGALKSIVNVIGMTKMTPPIKDLLPRLTPILKNRHE 120

Query: 913  KVQENCIDLVGRIADRGAEFVPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIAKAIG 972
            KVQENCIDLVGRIADRGAEFVPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIAKAIG
Sbjct: 121  KVQENCIDLVGRIADRGAEFVPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIAKAIG 180

Query: 973  PQDVLATLLNNLKVQERQNRVCTTVAIAIVAET 1005
            PQDVLATLLNNLKVQERQNRVCTTVAIAIVAET
Sbjct: 181  PQDVLATLLNNLKVQERQNRVCTTVAIAIVAET 213


>Glyma02g03600.1 
          Length = 56

 Score = 65.5 bits (158), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/54 (64%), Positives = 37/54 (68%), Gaps = 5/54 (9%)

Query: 927 DRGAEFV----PAREWMRICFELL-EMLKAHKKGIRRATVNTFGYIAKAIGPQD 975
           DRG E +     AREWMRICFELL EMLKA KKGIRRA VNT  YI  +  P D
Sbjct: 1   DRGTELIYIYQQAREWMRICFELLLEMLKARKKGIRRANVNTLRYIISSPKPLD 54