Miyakogusa Predicted Gene

Lj6g3v2193660.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v2193660.1 Non Chatacterized Hit- tr|F6HLD3|F6HLD3_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,73.02,4.2039e-45,Pseudouridine synthase,Pseudouridine synthase,
catalytic domain; DKCLD,Dyskerin-like; CENTROMERE/MIC,CUFF.60886.1
         (581 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma08g18860.1                                                       735   0.0  
Glyma15g06160.1                                                       674   0.0  
Glyma07g17670.1                                                       204   3e-52
Glyma05g16100.1                                                       162   9e-40
Glyma18g15690.1                                                       155   1e-37
Glyma18g39600.1                                                       128   2e-29
Glyma18g41150.1                                                       110   4e-24
Glyma05g09150.1                                                       104   2e-22
Glyma15g38560.1                                                        58   3e-08

>Glyma08g18860.1 
          Length = 600

 Score =  735 bits (1898), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/428 (84%), Positives = 379/428 (88%), Gaps = 32/428 (7%)

Query: 1   MSLSETKKKKH--RSATKTHDGAATTEDDHHTKDEPQFMIKPEKLTPTIDTSQWPILLKN 58
           MS S+TKKKK   RS  K H+G            E   MIKP+  TP IDTSQWPILLKN
Sbjct: 38  MSESDTKKKKQQQRSGGK-HEG------------EEGLMIKPQSFTPPIDTSQWPILLKN 84

Query: 59  YDRLNVRTGHYTPLPSGYSPLKRPLPEYLKYGVLNLDKPANPSSHEVVAWIKRLLRVEKT 118
           Y+RLN                 RPL EYLKYGVLNLDKPANPSSHEVVAWIKRLLRVEKT
Sbjct: 85  YERLN-----------------RPLSEYLKYGVLNLDKPANPSSHEVVAWIKRLLRVEKT 127

Query: 119 GHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHSDVPDVSKVARALETLTG 178
           GHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHS VPD+SKV+RALETLTG
Sbjct: 128 GHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHSAVPDISKVSRALETLTG 187

Query: 179 AVFQRPPLISAVKRQLRIRTIYESKLLEYDPDRHLVVFWISCEAGTYVRTMCVHLGLVLG 238
           AVFQRPPLISAVKRQLRIRTIYESKLLEYDPDRHLVVFWISCEAGTYVRTMCVHLGL+LG
Sbjct: 188 AVFQRPPLISAVKRQLRIRTIYESKLLEYDPDRHLVVFWISCEAGTYVRTMCVHLGLLLG 247

Query: 239 VGAHMQELRRVRSGIMGEKDNMVTMHDVIDAQWVFDNYRDESYLRRVVMPLEVLLTSYKR 298
           VG+HMQELRRVRSGIMGEKDNMV+MHDV+DAQWV+DNYRDE+YLRRVVMPLE+LLTSYKR
Sbjct: 248 VGSHMQELRRVRSGIMGEKDNMVSMHDVMDAQWVYDNYRDETYLRRVVMPLEILLTSYKR 307

Query: 299 LVVKDSAVNAICYGAKLMIPGLLRFENDIEAGEEVVLMTTKGEAIALGIAEMTTAVMATC 358
           LVVKDSAVNAICYGAK MIPGLLRFENDI+ GEEVVLMTTKGEAIALGIAEMTTAVMATC
Sbjct: 308 LVVKDSAVNAICYGAKFMIPGLLRFENDIDVGEEVVLMTTKGEAIALGIAEMTTAVMATC 367

Query: 359 DHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIAAGKLDKHGKPNESTPQEWMRNLVL 418
           DHGVVAKIKRVVMDRDTYPRKWGLGPRASMKK+LI+ GKLDKHGKPNE TPQEW+RNLVL
Sbjct: 368 DHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKRLISEGKLDKHGKPNEKTPQEWLRNLVL 427

Query: 419 PAGGDSMI 426
           P GGDSMI
Sbjct: 428 PTGGDSMI 435


>Glyma15g06160.1 
          Length = 492

 Score =  674 bits (1738), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/383 (85%), Positives = 342/383 (89%), Gaps = 7/383 (1%)

Query: 91  VLNLDKPANPSSHEVVAWIKRLLRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAG 150
           VLNLDKPANPSSHEVVAWIKRLLRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAG
Sbjct: 1   VLNLDKPANPSSHEVVAWIKRLLRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAG 60

Query: 151 KEYVCIARLHSDVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDPD 210
           KEYVCIARLHSDVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDPD
Sbjct: 61  KEYVCIARLHSDVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDPD 120

Query: 211 RHLVVFWISCEAGTYVRTMCVHLGLVLGVGAHMQELRRVRSGIMGEKDNMVTMHDVIDAQ 270
           RHLVVFWISCEAGTYVRTMCVHLGL+LGVG+HMQELRRVRSGIMGEKDNMV+MHDV+DAQ
Sbjct: 121 RHLVVFWISCEAGTYVRTMCVHLGLLLGVGSHMQELRRVRSGIMGEKDNMVSMHDVMDAQ 180

Query: 271 WVFDNYRDESYLRRVVMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEAG 330
           WV+DNYRDE+YLRRVVMPLE+LLTSYKRLVVKDSAVNAICYGAK MIPGLLRFENDI+ G
Sbjct: 181 WVYDNYRDETYLRRVVMPLEILLTSYKRLVVKDSAVNAICYGAKFMIPGLLRFENDIDVG 240

Query: 331 EEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKK 390
           EEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKK
Sbjct: 241 EEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKK 300

Query: 391 KLIAAGKLDKHGKPNESTPQEWMRNLVLPAGGDSMIXXXXXXXXXXXXXXXXIAVXXXXX 450
           +LI+ GKLDKHGKPNE TPQEW+RNLVLP GGDS+I                        
Sbjct: 301 RLISEGKLDKHGKPNEKTPQEWLRNLVLPTGGDSVIAGLAAAPEPEDD-------KIQKK 353

Query: 451 XXXXXXXXXXXHESTDSPASVPA 473
                      HESTDSP +VPA
Sbjct: 354 EGDGEGKKRKKHESTDSPVAVPA 376


>Glyma07g17670.1 
          Length = 148

 Score =  204 bits (518), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 101/151 (66%), Positives = 117/151 (77%), Gaps = 10/151 (6%)

Query: 169 VARALETLTGAVFQRPPLISAVKRQL------RIRTIYESKLLEYDPDRHLVVFWISCEA 222
           V RAL+ LTG VFQRPP       Q        +R +    +   +PDRHLVVFWISCEA
Sbjct: 1   VIRALKALTGVVFQRPPPPLDFCHQAPAPDSDHLRNL----IFHINPDRHLVVFWISCEA 56

Query: 223 GTYVRTMCVHLGLVLGVGAHMQELRRVRSGIMGEKDNMVTMHDVIDAQWVFDNYRDESYL 282
            TYV+TMCVHL L+LGVG+HMQELRRVRSGIMGEKDNMVT+HD   A+WV+DNYRD +YL
Sbjct: 57  STYVKTMCVHLCLLLGVGSHMQELRRVRSGIMGEKDNMVTIHDHGGAEWVYDNYRDGTYL 116

Query: 283 RRVVMPLEVLLTSYKRLVVKDSAVNAICYGA 313
           RRVVMPLE+LLT+YKR  VKDS+V+AICYGA
Sbjct: 117 RRVVMPLEILLTNYKRFFVKDSSVDAICYGA 147


>Glyma05g16100.1 
          Length = 112

 Score =  162 bits (410), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 72/93 (77%), Positives = 86/93 (92%)

Query: 208 DPDRHLVVFWISCEAGTYVRTMCVHLGLVLGVGAHMQELRRVRSGIMGEKDNMVTMHDVI 267
           +PD++LVVFWIS E GTYVRTMC+HLGL+LGVG+HMQELRRVRS IMGEKDNM TMHDV+
Sbjct: 6   NPDKNLVVFWISSEVGTYVRTMCMHLGLLLGVGSHMQELRRVRSRIMGEKDNMATMHDVM 65

Query: 268 DAQWVFDNYRDESYLRRVVMPLEVLLTSYKRLV 300
           DAQWV+DNYRDE+YLR+VVMPLE+LL + + L+
Sbjct: 66  DAQWVYDNYRDETYLRKVVMPLEILLLAIRGLL 98


>Glyma18g15690.1 
          Length = 93

 Score =  155 bits (392), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 82/129 (63%), Positives = 90/129 (69%), Gaps = 37/129 (28%)

Query: 183 RPPLISAVKRQLRIRTIYESKLLEYDPDRHLVVFWISCEAGTYVRTMCVHLGLVLGVGAH 242
           RPPLISA+KRQLRIRTIYES LL                                GVG+H
Sbjct: 1   RPPLISAIKRQLRIRTIYESWLL--------------------------------GVGSH 28

Query: 243 MQELRRVRSGIMGEKDNMVTMHDVIDAQWVFDNYRDESYLRRVVMPLEVLLTSYKRLVVK 302
           MQELRRV+ GIMGEKDNMVTMHDV+DAQWV+DNYRDE+YLRRVVMP+E+LLTSYKRLV  
Sbjct: 29  MQELRRVKFGIMGEKDNMVTMHDVMDAQWVYDNYRDETYLRRVVMPMEILLTSYKRLV-- 86

Query: 303 DSAVNAICY 311
              VNAICY
Sbjct: 87  ---VNAICY 92


>Glyma18g39600.1 
          Length = 103

 Score =  128 bits (321), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 73/114 (64%), Positives = 77/114 (67%), Gaps = 29/114 (25%)

Query: 212 HLVVFWISCEAGTYVRTMCVHLGLVLGVGAHMQELRRVR----SGIMGEKDNMVTMHDVI 267
           HLVVF ISCE  TYVRTMCVHLGL          LRRV      GIMGEKDNMVTMHD  
Sbjct: 1   HLVVFSISCEVDTYVRTMCVHLGL----------LRRVGLASWFGIMGEKDNMVTMHD-- 48

Query: 268 DAQWVFDNYRDESYLRRVVMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLL 321
                         LRRVVMPLE+LLTSYKR+VV DSA+NAICYGAK MIPGL+
Sbjct: 49  -------------GLRRVVMPLEILLTSYKRVVVNDSAINAICYGAKFMIPGLI 89


>Glyma18g41150.1 
          Length = 59

 Score =  110 bits (275), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 50/59 (84%), Positives = 55/59 (93%)

Query: 263 MHDVIDAQWVFDNYRDESYLRRVVMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLL 321
           M DV+DAQWV+DNYRDESYLRRVVMPLE+LLTSYKRLVV DSAV+AICYGAK MIP L+
Sbjct: 1   MDDVMDAQWVYDNYRDESYLRRVVMPLEILLTSYKRLVVNDSAVSAICYGAKFMIPRLI 59


>Glyma05g09150.1 
          Length = 485

 Score =  104 bits (260), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 66/202 (32%), Positives = 102/202 (50%), Gaps = 34/202 (16%)

Query: 91  VLNLDKPANPSSHEVVAWIKRLLRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAG 150
           VL ++KP   +S  V   ++RL++V+K GH+GTLDP  TG LIVC+ +AT+LV   QG  
Sbjct: 268 VLLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 327

Query: 151 KEYVCIARL-------HSDVPDVSK----------VARALETLTGAVFQRPPLISAVK-- 191
           K Y  + RL        +D P + +          + R   + +G ++Q PP+ SA+K  
Sbjct: 328 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIKRNALSFSGEIWQVPPMFSAIKVG 387

Query: 192 ------RQLRIRTIYES----KLLEYD-----PDRHLVVFWISCEAGTYVRTMCVHLGLV 236
                 +  R  +I  S     + ++D      DR  ++F ++C  GTY+R++C   G  
Sbjct: 388 GEKMYEKARRGESIELSPRRISIFQFDIERSLDDRQNLIFRVTCSKGTYIRSLCADFGKA 447

Query: 237 LGVGAHMQELRRVRSGIMGEKD 258
           LG  AH+  LRR   G     D
Sbjct: 448 LGSCAHLTALRRDSIGQYSADD 469


>Glyma15g38560.1 
          Length = 162

 Score = 58.2 bits (139), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/29 (82%), Positives = 27/29 (93%)

Query: 208 DPDRHLVVFWISCEAGTYVRTMCVHLGLV 236
           +P+RHLVVFWIS EA TYVRTMCVHLGL+
Sbjct: 87  NPNRHLVVFWISSEARTYVRTMCVHLGLL 115