Miyakogusa Predicted Gene

Lj6g3v2085690.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v2085690.1 tr|B9H210|B9H210_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_555484 PE=4
SV=1,56.99,8e-19,seg,NULL; DUF3774,Protein of unknown function
wound-induced,CUFF.60657.1
         (90 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g32070.1                                                        75   1e-14
Glyma13g37750.1                                                        47   4e-06

>Glyma13g32070.1 
          Length = 84

 Score = 75.5 bits (184), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/95 (51%), Positives = 57/95 (60%), Gaps = 16/95 (16%)

Query: 1  MSLRYMSRVFYQTGVKMLK----DTGSKCGDSTMKSLKDXXXXXXXXXXXXXKQTWRFLS 56
          MSLRYMSRV YQ G++ML+      GS   DST+KSL               KQ  RFLS
Sbjct: 1  MSLRYMSRVIYQGGMRMLQGMKEQLGSNKCDSTIKSLN--------LRDSSSKQN-RFLS 51

Query: 57 FFDSPAFKAPNTD-KAKQAEESLRLIMFLSCWGPN 90
               +FK PN D K KQAE+SLR +M+LSCWGPN
Sbjct: 52 --SGTSFKPPNNDNKLKQAEDSLRTVMYLSCWGPN 84


>Glyma13g37750.1 
          Length = 90

 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 38/77 (49%), Gaps = 6/77 (7%)

Query: 15 VKMLKDTGSKCGDSTMKSLKDXXXXXXXXXXXXXKQTWRFLSFFDSPAFKAPNTD-KAKQ 73
          V+ LKD G    +S M+S +              K      SF  S    A   D KAKQ
Sbjct: 19 VEALKDQGICRWNSVMRSAQQHAKHNMRSLSQTKK-----FSFQSSAMASAKLKDEKAKQ 73

Query: 74 AEESLRLIMFLSCWGPN 90
          +EESLR +M+LSCWGPN
Sbjct: 74 SEESLRTVMYLSCWGPN 90